BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781101|ref|YP_003065514.1|
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus Liberibacter
asiaticus str. psy62]
         (472 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254781101|ref|YP_003065514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040778|gb|ACT57574.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 472

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 472/472 (100%), Positives = 472/472 (100%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA
Sbjct: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT
Sbjct: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH
Sbjct: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH
Sbjct: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL
Sbjct: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL
Sbjct: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR
Sbjct: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ
Sbjct: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472


>gi|325293469|ref|YP_004279333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
 gi|325061322|gb|ADY65013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Agrobacterium sp. H13-3]
          Length = 477

 Score =  314 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 236/471 (50%), Positives = 314/471 (66%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D++    G  +G +P   + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MNWLWTVADMIAITAGRPVGNLP-TGITGISIDSRTVKAGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAGL+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGAGLLVVAEGKLPALGRLTVPMIVVEDVLAALGKLAIAARERTTARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIASAKAEIFEGLE  G + LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIASAKAEIFEGLEDGGFVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  S  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 DQGIEHILTFGQHAKADFRLADFESTSTGSTIWAILNGETSELHLNIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A + L      +GRG+R+R  +  G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRAFEVLGTLEAVKGRGQRHRLTIESGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGYGRRVAVLGDMLEMGEFSAQLHEELAGPLLAGGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA 
Sbjct: 420 SVTVIWFPTTAELADFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPAF 470


>gi|116253052|ref|YP_768890.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257700|emb|CAK08798.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 477

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 242/471 (51%), Positives = 328/471 (69%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++  + G   G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAVMAGRPFGTLPEG-ITGISIDSRSITPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L++V+   + ++G L++P+  V+DVL AL +L +A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLIVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSRARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R  +  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLRPEKGRGKRHRLVIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGEYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP  
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470


>gi|241205561|ref|YP_002976657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859451|gb|ACS57118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 477

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 240/471 (50%), Positives = 328/471 (69%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRS  P  AFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSTTPGAAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GE+R L  
Sbjct: 120 TTKEMLRHVLAPSGKVHASVASFNNHWGVPLTLARMPEDTDYGVFEVGMNHPGEVRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVALGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD+  AI+AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMQKAIEALATLKPEKGRGKRHRLSIGGGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P G GRRIAVLGDM EMG+ +Q  H DLA  L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTGRGRRIAVLGDMLEMGDYAQKVHTDLAVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP  
Sbjct: 420 SVHVEYRENTSELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470


>gi|209550178|ref|YP_002282095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535934|gb|ACI55869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 477

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 245/471 (52%), Positives = 330/471 (70%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIAP EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSIAPGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGLASRQRSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVE 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RPH+A+ITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPHVAIITTIAPAHLGNFKNIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIEHIHSFGQHAKAEFRLAEFNGADENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+V I+ AD++ AI AL+   P++GRGKR+R ++  G FTLIDESYNANPASM+AAI++L
Sbjct: 300 GVVRIVGADMEKAIAALATLKPEKGRGKRHRLSIGSGSFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P   GRRIAVLGDM EMGE +Q  H DL   L    I HVWL+G  + ALK++LP 
Sbjct: 360 AASEPTSRGRRIAVLGDMLEMGEYAQKVHTDLVVPLLAAGIEHVWLAGAEMAALKESLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S+HV Y E    L  ++ +S+  GDV++VKSS   GF +++  LL++FP  
Sbjct: 420 SVHVEYRENTGELTDYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKFPPF 470


>gi|327194626|gb|EGE61476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 479

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 244/473 (51%), Positives = 328/473 (69%), Gaps = 3/473 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSIA  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAMAGRPFGALPEG-ITGISIDSRSIASGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +LGI+ I+SFG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  L
Sbjct: 240 SLGIENIHSFGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAIS 358
           G+V I+ AD++ AI AL+   P++GRGKR+R       G FTLIDESYNANPASM+AAI+
Sbjct: 300 GVVRIVGADLEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIA 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+   P G GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++L
Sbjct: 360 LLAAAEPSGRGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           P S+HV Y E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA 
Sbjct: 420 PESVHVEYREKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPAF 472


>gi|222086448|ref|YP_002544982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
 gi|221723896|gb|ACM27052.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L- lysyl- D
           -alanyl-D-alanine synthetase protein [Agrobacterium
           radiobacter K84]
          Length = 486

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 240/476 (50%), Positives = 327/476 (68%), Gaps = 6/476 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ AI G S G +P+G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTEDMIAAIVGRSFGAMPEG-ITGISIDSRSIKPGEAFFAIKGDRVDGHDYANLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA ++V++   + ++G L++P   VDDVL AL +L VAAR R++A IIA+TGSVGKT
Sbjct: 60  MANGAAMIVISEARLPAMGRLTVPKIVVDDVLAALGRLGVAARQRTQAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H  EIR L  
Sbjct: 120 TTKEMLRRTLSPSGKVHASVASFNNHWGVPLTLARMPEDTDFGVFEIGMNHPEEIRPLAK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V PH+A+ITTIAPAHL NF  I EIA+AKAEIF+G+   G + LN D+  FE L+  + 
Sbjct: 180 MVEPHVAIITTIAPAHLGNFKSITEIAAAKAEIFDGVAPGGHVILNRDNDQFEFLERAAL 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ ++SFG+   AD +L ++    E S + + + G++MEV     G H+A+N L  L
Sbjct: 240 AAGVEHVHSFGQHAKADVRLAEFNASEENSTLWLTIGGETMEVAIGAPGRHIAENALAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V ++ AD+D AI AL+    ++GRG+R++  +  G+FTLIDESYNANPASM+AAI++L
Sbjct: 300 GTVMLVDADLDKAIDALATLQAEKGRGQRHKRVVGNGYFTLIDESYNANPASMRAAIALL 359

Query: 361 SQISPHGE-----GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +  SP        GRRIAVLGDM EMG+ +Q  H +LA  L    I +VWL+G  + AL+
Sbjct: 360 ATSSPDANVGSRAGRRIAVLGDMLEMGDYAQRVHANLAGPLLAAGIEYVWLAGPEMAALR 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           DALP S++V Y E  + L  F+ +S+  GDV++VKSS   GF +++  LL++FPA 
Sbjct: 420 DALPESVYVEYRENTEELAEFVLNSVAPGDVLMVKSSLGTGFGKIVTALLDKFPAF 475


>gi|315122415|ref|YP_004062904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495817|gb|ADR52416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 472

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 355/472 (75%), Positives = 408/472 (86%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWTFHDLL AIQG ++G VP+ FV GISIDSRSIAP+EAFFAIKG HYDGHDF+LHA
Sbjct: 1   MSNLWTFHDLLHAIQGKALGEVPEDFVQGISIDSRSIAPKEAFFAIKGDHYDGHDFVLHA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQK A LVV+N +M+ASIG LS+PVF V+DVL ALNKLA AARLRS+A IIAITGSVGKT
Sbjct: 61  VQKSACLVVINAEMMASIGPLSVPVFVVEDVLSALNKLASAARLRSQAKIIAITGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML +ALSS  K +  I SYNNHIGVPLTLA+MP D +FGIFELGMSHLGEIRFLTH
Sbjct: 121 TAKEMLKLALSSAGKIHVSIASYNNHIGVPLTLAQMPADAEFGIFELGMSHLGEIRFLTH 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPHIA+ITTIAPAHL NFSGIEEIASAK+EIFEGLEKTGT+ LN DDSFFE LK KSH
Sbjct: 181 LVRPHIAMITTIAPAHLGNFSGIEEIASAKSEIFEGLEKTGTVLLNRDDSFFEFLKEKSH 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LGI  +Y+FG+S +ADF+L   +QCSE+S M VQLQGKS EVVHH +G HMAQN+L TL
Sbjct: 241 LLGIYNVYTFGESIDADFRLLTLEQCSEESRMRVQLQGKSAEVVHHAVGRHMAQNILATL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GIVS+L A ++ AI+ +S+F+P++GRGKRYRCAL +GFFTLIDESYNANP SM+AAISVL
Sbjct: 301 GIVSLLDASIEKAIQDISLFYPQKGRGKRYRCALKEGFFTLIDESYNANPTSMRAAISVL 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQISPHG+GRRIAVLGDM EMGE ++SFHIDLAE+L  YNISHVWLSG HVLALK+ALP+
Sbjct: 361 SQISPHGKGRRIAVLGDMSEMGERAESFHIDLAEILCSYNISHVWLSGVHVLALKNALPK 420

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            +HVHY E +D   LFIQSSL+DGDV+V+KSS+SCGF+ L+ LLLEEF  IQ
Sbjct: 421 DMHVHYRERIDDFLLFIQSSLIDGDVIVIKSSHSCGFHSLVELLLEEFTLIQ 472


>gi|15889382|ref|NP_355063.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
 gi|15157232|gb|AAK87848.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium tumefaciens str.
           C58]
          Length = 477

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 232/471 (49%), Positives = 317/471 (67%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++    G  +G +P   + GISIDSR++   EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTVADMIAITAGRPVGNLP-TGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VV    + ++G L++P+  V+DVL AL KLA+AAR R+ A IIA+TGSVGKT
Sbjct: 60  VANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+   + +A + S+NNH GVPLTLARMP D +FG+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIAPAHL NF  IEEIA+AKAEIFEG+E+ G++ LN D++ FE L+  + 
Sbjct: 180 MVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ I +FG+   ADF+L  ++  +  S +   L G++ E+  +  G H+A N +  L
Sbjct: 240 EAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V++  A++D A++AL      +GRG+R+   +N G F LIDESYNANPASM+AAI+VL
Sbjct: 300 GAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++    G GRR+AVLGDM EMGE S   H +LA  L    I HVWL+G  + AL+DALP 
Sbjct: 360 AETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPD 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S+ V +  T   L  F    +  GD ++VKSS   GF +++  LL+++PA 
Sbjct: 420 SVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPAF 470


>gi|254470256|ref|ZP_05083660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
 gi|211960567|gb|EEA95763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
            protein [Pseudovibrio sp. JE062]
          Length = 1257

 Score =  301 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/467 (43%), Positives = 272/467 (58%), Gaps = 2/467 (0%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            PLW   D L+A+ G   G +    + GISIDSR+I P EAFFAIKG ++DGH F   AV+
Sbjct: 785  PLWLLSDFLEAVDGDVHGDLAD-DITGISIDSRTIQPGEAFFAIKGENFDGHAFAGTAVE 843

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             GA + VV+ + +  +         VDDVL AL +L VAAR RSKA IIA+TGSVGKT T
Sbjct: 844  AGASVAVVSREKLGELPEGG-RYVAVDDVLKALERLGVAARARSKARIIAVTGSVGKTGT 902

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            KE L + LS    T+A + S+NNH GVPLTLARM  D +FGIFE+GM+H GEI  L  +V
Sbjct: 903  KEALRLCLSKSGITHAPVASFNNHWGVPLTLARMHADTEFGIFEIGMNHRGEITPLVKMV 962

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RPH+A++TT+ P HL  F+ +E+IA AKAEIF G+E  G   LN D+  ++LL+  +   
Sbjct: 963  RPHVAIVTTVEPVHLEAFNSVEDIARAKAEIFTGIEPGGVAILNRDNRQYDLLRYLAAVA 1022

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            G+K I SFG    A    +K     + S +   + G+ +       G H   N L  L  
Sbjct: 1023 GVKNIVSFGMQPGAQSIAKKVAVNPDCSCLNANILGQEISYKIGAPGAHHVINSLGVLTG 1082

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            V  L A++  A  AL+     +GRG +    +N G   L+DESYNANPASM+AAI++++ 
Sbjct: 1083 VMELGANLAFAGLALAEMSAPKGRGAQTVLDVNGGTALLVDESYNANPASMRAAINLVAG 1142

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +     GRRIAVLGDM E+G  S   H DLA  L    I  V+  G H+  L + LP   
Sbjct: 1143 LPVEKNGRRIAVLGDMLELGADSDKLHADLARELERAKIDIVYCVGTHMKVLWERLPAQT 1202

Query: 423  HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               YSET D L   + S +   D+V+VK S       L++ L + FP
Sbjct: 1203 RGAYSETSDKLEKDLLSEVRPNDIVMVKGSLGTRMGPLVDALKKRFP 1249



 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 156/472 (33%), Gaps = 37/472 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  A  G          ++G++ DSR++ P   F A+KG   DG  FI  AV  G
Sbjct: 6   LTKQEIDSA-AGDGPDGAGALTISGLTADSRAVEPGFVFAALKGAKVDGAQFIEQAVDAG 64

Query: 65  AGL---VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A          D      +  +P+   +D    L  +A A   R    ++A+TG+ GKT+
Sbjct: 65  AAAILIDADRIDDDIRKKAKQVPLIAANDARRELALMAAAFAGRQPEKMVAVTGTAGKTS 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------L 167
               +           A +G+         +   +       + E              +
Sbjct: 125 VAVFVRQIFEYAGLVSASLGTIGTVTSTGQSYGGLTTPDPVSLHEDLKRLAEDGITHAAM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +     VR   A  T +   H+     +E+   AK  +F  L     + +  
Sbjct: 185 EASSHGLDQHRLDGVRIVAAGFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLPDDGVVVID 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++ F     +         ++ G     D ++R  +       +E++       V    
Sbjct: 245 PEAQFADRVLEVAKERGLKTFTTG-FFGEDLKVRSVQPEGFSQVLELETAEGVFSVALPL 303

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L+  G+       + TA++AL+V     GR +      N      +D ++ 
Sbjct: 304 AGDFQVSNALIAAGLAIAAGVPLQTALEALTVLRGAPGRIEHVGTRENGA-LVFVDYAHK 362

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                     +VL+ + P   GR I+V G     G    +    L   +S        ++
Sbjct: 363 PEALE-----NVLAALRPFAPGRLISVFG----CGGDRDAGKRPLMGEISARLADVSIVT 413

Query: 408 GFHVL-----ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +       ++++ +  +                    L +GDV+ V  K 
Sbjct: 414 DDNPRTENPDSIREEIVAACPAALEIGDRALAIRQAVKMLQEGDVLCVAGKG 465


>gi|222149140|ref|YP_002550097.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
 gi|221736125|gb|ACM37088.1| UDP-MurNAc-pentapeptide synthetase [Agrobacterium vitis S4]
          Length = 477

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 241/471 (51%), Positives = 318/471 (67%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G  +G +P G + GISIDSRSI P EAFFAIKG   DGHD+   A
Sbjct: 1   MTLLWTIEDLVAAMTGRPVGTMPPG-ITGISIDSRSIQPGEAFFAIKGDRVDGHDYASIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA L+VVN   + ++G L++P+  VDDVL AL +LA+AAR RS+A I+A+TGSVGKT
Sbjct: 60  VANGAALMVVNEAKLPALGRLTVPMIVVDDVLQALGRLAIAARARSRAKIVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   + +A + S+NNH GVPLTLARMP    +G+FE+GM+H GEI  L  
Sbjct: 120 TTKEMLRQVLAPSGEVHAAVASFNNHWGVPLTLARMPATAQYGVFEIGMNHSGEITPLVQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AVITTIAPAHL NF+ ++EIA AKAEIF G+   G + LN+D+ +FE L+ K+ 
Sbjct: 180 MVRPHLAVITTIAPAHLGNFTSVDEIADAKAEIFSGVAANGGVLLNHDNPYFEYLEHKAQ 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI  I+SFG+   A+F+L ++   +E S     + G++ EVV    G H+A+N +  L
Sbjct: 240 EAGITHIHSFGQHAKAEFRLAEFDGAAESSTAWAIIDGETREVVIAAPGRHIAENAMAAL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +L AD+D A+ ALS   P +GRG+R+R     G FTLIDESYNANPASM+AAI+VL
Sbjct: 300 GAARLLGADLDGAVDALSRLSPVKGRGERHRLRCASGLFTLIDESYNANPASMRAAIAVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   P GEG RIAVLGDM EMGE S+  H DLA  L    I HVWL+G  + AL+  LP 
Sbjct: 360 AAAQPRGEGHRIAVLGDMLEMGEFSEELHADLAGPLLAAGIEHVWLAGPAMAALRAQLPE 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           ++ V    T + L  F  +S+  GDVV+VKSS   GF +++  LL+ +P +
Sbjct: 420 TVSVASFNTAEDLAAFAVASVHGGDVVMVKSSLGIGFGKIVAALLDNYPPL 470


>gi|295402559|ref|ZP_06812508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975407|gb|EFG51036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 458

 Score =  299 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G           V+G+S D+R+I     +  +KG  +DGH F+  A+ KG
Sbjct: 5   TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +           +PV  VDD L AL +LA   R +  A +I ITGS GKTTTK+
Sbjct: 65  ASAVLWSE--TEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L++  K     G+ NNHIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P
Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL      E IA AK EI  GL+K G    N D+       A  H    
Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVA--HLPLP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+    D+        +    M    Q  +       +G H   N L  L +  
Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANG-MMFTIRQAANRSFFLPILGKHHVYNALAALAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +ALS     +    R      +  +T+I+++YNANP SMKAA+ +L +++
Sbjct: 300 FFDVSWENVQEALSR---LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            + +    AVLGDM E+G+    FH ++  +L    + +V+  G     +  A       
Sbjct: 357 GYKKKM--AVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V+  E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458


>gi|312112529|ref|YP_003990845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
 gi|311217630|gb|ADP76234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y4.1MC1]
          Length = 458

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 140/464 (30%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G           V+G+S D+R+I     +  +KG  +DGH F+  A+ KG
Sbjct: 5   TLRDIQAMVDGRGLADKFLDIMVHGVSTDTRTIQKGNLYVPLKGAKFDGHTFVQDALDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ +           +PV  VDD L AL +LA   R +  A +I ITGS GKTTTK+
Sbjct: 65  ASAVLWSE--TEGSPPADVPVIVVDDTLRALQRLAHRYRKQLSAKVIGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L++  K     G+ NNHIGVPLTL R+  DV+  + E+GMS+ GEI  L+++  P
Sbjct: 123 IVAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDVEMAVVEMGMSNFGEIELLSNIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL      E IA AK EI  GL+K G    N D+       A  H    
Sbjct: 183 DAAIITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYNGDEPLLASRVA--HLPLP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+    D+        +    M    Q  +       +G H   N L  L +  
Sbjct: 241 EHVLTFGQGNKNDYYPESVHLQANG-MMFTIRQAANRSFFLPILGKHHVYNALAALAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +ALS     +    R      +  +T+I+++YNANP SMKAA+ +L +++
Sbjct: 300 FFGVSWENVQEALSR---LQVTRMRMEVIETEKGWTVINDAYNANPTSMKAALQLLQELT 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            + +    AVLGDM E+G+    FH ++  +L    + +V+  G     +  A       
Sbjct: 357 GYKKKM--AVLGDMLELGDREVEFHQEIGAMLRPEIVDYVFTYGKLARHIALAAQPFFPD 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V+  E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 415 GRVNAYEDKRALAKDLLAVVSPGDVILLKASRGMKLEELLPDLQ 458


>gi|239832313|ref|ZP_04680642.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
 gi|239824580|gb|EEQ96148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ochrobactrum intermedium LMG 3301]
          Length = 476

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 221/474 (46%), Positives = 308/474 (64%), Gaps = 3/474 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+  LW   D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  
Sbjct: 1   MSEWLWKSDDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGK
Sbjct: 60  AMAAGAGLIVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L 
Sbjct: 120 TTTKEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLV 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +
Sbjct: 180 KMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELA 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G++ I +FG++  +D++LR+ K     S M V+       V     G H+ QNML  
Sbjct: 240 EKAGVEHIVTFGENARSDYRLREVKLHPTCSCMTVKAGTHEAAVKVGMPGRHIVQNMLAV 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG   ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+
Sbjct: 300 LGAADLVGADIAKVMMAMATLTAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSL 359

Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           L   +P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+AL
Sbjct: 360 LHSTAPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNALFIGGPDMSALKNAL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           P  IH  Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 420 PVEIHTEYRQSTDELLPLVVKTVRPGDVIMVKSSKGIGFSKIVKALISQFPPVE 473


>gi|153009070|ref|YP_001370285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560958|gb|ABS14456.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 476

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 221/474 (46%), Positives = 310/474 (65%), Gaps = 3/474 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+  LWT +D+++A++G   G +P G + GISIDSRS+ P EAFFAIKG  +DGHDF+  
Sbjct: 1   MSDWLWTSNDMVEAMEGRPFGNLPGG-ITGISIDSRSLKPGEAFFAIKGEQFDGHDFVTS 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GAGL+VV    + + G+  +P+  V+DVL AL KL +A+R RSKA IIA+TGSVGK
Sbjct: 60  AMAAGAGLLVVAEHRLPAFGNSKVPMIVVEDVLEALTKLGIASRARSKAQIIAVTGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE L   LS + K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H  EIR L 
Sbjct: 120 TTTKEALRHVLSEVGKVHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHHDEIRPLV 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F+ L+  +
Sbjct: 180 KMVRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFKQLEELA 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G++ I +FG++  +D++LR+ K     S M V++      V     G H+ QNML  
Sbjct: 240 EKAGVEHIATFGENARSDYRLREVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAV 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG   ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+
Sbjct: 300 LGAADLVGADIAKVMMAMATLSAEGGRGARHVLQHPEGTFTLIDESYNANPTSMRAALSL 359

Query: 360 LSQISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           L   +P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  + ALK+AL
Sbjct: 360 LHSTTPEGSRGRRIAVLGDMLELGRQSGKLHADLARPIVDAEVNTLFIGGPDMSALKNAL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           P  I   Y ++ D L   +  ++  GDV++VKSS   GF +++  L+ +FP ++
Sbjct: 420 PVEIQTEYRQSTDELLPLVIKAVRPGDVIMVKSSKGIGFSKIVKTLISQFPPVE 473


>gi|307266533|ref|ZP_07548066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918452|gb|EFN48693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 225/472 (47%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  K 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLKY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+ K  D      K+  +     ++ +    E+     G H   N L  
Sbjct: 240 SSKYYRYGIKSGEIKACD-----IKKGEKDIKYTLKYKDLEKEIKLSVPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P    GK     + +G   +ID+ YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDMKIIDDVYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +    +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD ++VK S      +++  L E 
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459


>gi|240850896|ref|YP_002972296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
 gi|240268019|gb|ACS51607.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           grahamii as4aup]
          Length = 473

 Score =  294 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 206/472 (43%), Positives = 294/472 (62%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  +G +P+   +G+SIDSR++A  + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKKALVAAINGVVMGSMPET-FSGVSIDSRTLAEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GAG+++V    +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YERGAGVLIVAEHRLRDMKKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL+     +A + S NN  GVPLTLARMP++ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALAMTGNVHANLASLNNCWGVPLTLARMPIESDYGIFEIGMNHRDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D  FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKNLEEIAKAKAEIFEGLDEKGIAILNADSDFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+SKNAD+Q R  +  +++S M V+++ +  EV     G H+ QN L  +
Sbjct: 240 KCGVKNILSFGESKNADYQARDIRLLTDRSSMIVRIRERDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                +  +++  + +   F  ++GRG RYR +L+ G    + + SYNANPASM+AA+ +
Sbjct: 300 AACDAMGVELEPVLLSFRHFSSQKGRGVRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EGRRIA+LGDM E+GE S+  H DL + + L   + V+L G  + +L   L 
Sbjct: 360 LATGPVGEEGRRIAILGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   + + +  GD+++VKSSNS     ++  LL+ + A+
Sbjct: 420 AGVKVHYAENIEKILSLLLAEISSGDLLMVKSSNSLCSSNIVTALLDRYKAV 471


>gi|239825777|ref|YP_002948401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
 gi|239806070|gb|ACS23135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. WCH70]
          Length = 463

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 213/464 (45%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D+   + G           V G+S D+R+I     +  +KG  ++GH F+  A+ KG
Sbjct: 10  TLRDIQSMVDGRGLANEFFDITVYGVSTDTRTIQQGNLYVPLKGAKFNGHAFVQDAIDKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             +PV  VDD L AL +LA   R +    +I ITGS GKTTTK+
Sbjct: 70  ASAVLWAE--TEGTPPKDVPVIIVDDTLRALQRLAHRYRKQLSVKVIGITGSNGKTTTKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  K     G+ NNHIGVPLTL R+  D +  + E+GMS+ GEI  L+++  P
Sbjct: 128 MIAALLATTYKVQKTEGNLNNHIGVPLTLLRLEEDTEMAVVEMGMSNFGEIELLSNIAEP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +HL      E IA AK EI  GL+K G    + D+     +         
Sbjct: 188 DAAVITNIGESHLQELGSREGIAQAKLEILSGLKKNGLFVYHGDEPLL--VNRVPDLPLP 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG+  + D+  +     +  +      Q  +       +G H   N L  + +  
Sbjct: 246 EHVLRFGQGSDNDYYPKAVHVQANGTT-FTVHQAPNRSFFLPILGKHHVYNALAAIAVAR 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   +A S     +    R      +  +T+I+++YNANP SMKAA+ +L +++
Sbjct: 305 FFHVSWEKIQEAFSQ---LQVTRMRMELIETKKGWTIINDAYNANPTSMKAALQLLHELT 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            + +   IAVLGDM E+G+    FH ++  +L    + +V+  G     +  A       
Sbjct: 362 GYEKK--IAVLGDMLELGDQEVEFHREIGAMLRPEMVDYVFTYGALARHIALAAQPFFPD 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   E    L   + + +  GDV+++K+S       L+  L 
Sbjct: 420 GRVKAYEDKQSLAKDLLAVVSSGDVILLKASRGMKLEELLPDLQ 463


>gi|163868717|ref|YP_001609929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
 gi|161018376|emb|CAK01934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           tribocorum CIP 105476]
          Length = 472

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 210/472 (44%), Positives = 297/472 (62%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW   +L+ AI G  IG +P+   +G+SIDSR++A  + FF IKG H DGHDF L A
Sbjct: 1   MTALWNKQELITAIDGVVIGNIPET-FHGVSIDSRALAEGDIFFCIKGHHLDGHDFALQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V    +  +  +S P+  V DVL AL KL  AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAEHRLRDMEKISAPLIVVPDVLQALEKLGKAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L++    +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATAGNVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT I   H+  F  +EEIA AKAEIFEGL++ G   LN D +FF  L  K+ 
Sbjct: 180 LVCPHVALITHICAGHMGFFKDLEEIAEAKAEIFEGLDEEGIAILNADSAFFSYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++NAD+Q R  +  +  S M V++ G+  EV     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGETENADYQARDIRLLTNHSSMIVRIGGQDREVQIGAPGRHIVQNSLGVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                +  D+D+ + +LS F P++GRG RYR +L+ G    + + SYNANPASM+AA+ +
Sbjct: 300 AACDAVGVDLDSIVFSLSHFSPQKGRGIRYRLSLSNGGEFYLIDESYNANPASMRAALEL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      +GRRIAVLGDM E+GE S+  H DL + + L   + V+L G  + +L   L 
Sbjct: 360 LATGPVGEKGRRIAVLGDMLELGEYSEKLHRDLIKPIRLSGANPVFLFGEAMKSLVSDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   + + +  GD++++KSSNS     ++  LL+ + A+
Sbjct: 420 ADVKVHYAENIEKILPLLLTEISPGDLLMIKSSNSLCSSNIVTALLDRYKAV 471


>gi|190892587|ref|YP_001979129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase [Rhizobium etli CIAT 652]
 gi|190697866|gb|ACE91951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 470

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 237/464 (51%), Positives = 321/464 (69%), Gaps = 3/464 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGALPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  V+DVL AL +L  A+R RS+A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVEDVLAALGRLGQASRERSRAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP +AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVTMIRPDVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEAGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R       G FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 LEKAIAALATLKPEKGRGKRHRLSIGSGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           E    L  ++ +++  GDV++VKSS   GF +++  LL++FPA 
Sbjct: 420 EKTSELTDYVLNAVAPGDVLMVKSSLGIGFGKIVAALLDKFPAF 463


>gi|13471553|ref|NP_103119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mesorhizobium loti MAFF303099]
 gi|14022295|dbj|BAB48905.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Mesorhizobium
           loti MAFF303099]
          Length = 477

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 222/470 (47%), Positives = 306/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSDALVAAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMP + D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPDNCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD  F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDGRFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   ++ AD++    AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAQLVGADLNKVALALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NATPVTGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMRALAEALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I + Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL ++PA
Sbjct: 420 DIKMEYRAGVEQLKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKYPA 469


>gi|326391688|ref|ZP_08213213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992266|gb|EGD50733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 219/472 (46%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    + V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGAIAVITARLENVECLKDFSVDVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+ K  D      ++  +     ++ +    E+     G H   N L  
Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P + R         +         YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKRRLNIIEIGDIKIIDD----VYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +    +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD ++VK S      +++  L E 
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459


>gi|260462086|ref|ZP_05810330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
 gi|259031946|gb|EEW33213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium opportunistum WSM2075]
          Length = 477

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 226/470 (48%), Positives = 307/470 (65%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT   L+ A+ G  +G +P+G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MNLLWTSEALVTAMDGRPLGPMPEG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VAAR RS+A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIVVVEDVLVALEKLGVAARARSQAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   LS++ K +A   S+NNH GVPLTLARMPVD D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLSAVGKVHASAQSFNNHWGVPLTLARMPVDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEG+E  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGIEPDGAAILNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  M       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDIAARIGGHDMIARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +++AD+D  + AL+    + GRGKR+      G  TLIDESYNANPASM AA+++L
Sbjct: 300 GAAHLVSADLDKVVLALADLSAERGRGKRHVLRHPGGPITLIDESYNANPASMAAAMALL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + AL +ALP 
Sbjct: 360 NTTPVAGEGRRIAVLGDMLELGDHSAKLHAALADLIVGTGTQTVFLGGPEMKALAEALPA 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            I   Y      L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 EIQTEYRAGAAELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 469


>gi|254500989|ref|ZP_05113140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
 gi|222437060|gb|EEE43739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Labrenzia alexandrii DFL-11]
          Length = 476

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 195/471 (41%), Positives = 274/471 (58%), Gaps = 3/471 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ PLWT    + A  G + G V    + GISIDSR++ P +AF AIKG   DGHD++  
Sbjct: 1   MSDPLWTSEVFIDACGGTAKGDVG-AHITGISIDSRTLEPGDAFIAIKGDRLDGHDYVAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA L +V  D +  +         VDD L A+  L VAAR R+ A I+A+TGSVGK
Sbjct: 60  ALEAGASLALVAEDSLGDLPDDG-RYVVVDDPLEAMRALGVAARARTNARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L +AL+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  L 
Sbjct: 119 TGTKEALRLALAPSGKVHASVASFNNHWGVPLTLARMPADTDFGVFEIGMNHAGEITPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A+ITT+   H+  F  +E+IA AKAEIF GLE  G   LN D+  ++LL+  +
Sbjct: 179 QMVRPHVAIITTVEAVHIEFFESVEKIAQAKAEIFNGLEPDGVAILNRDNKQYDLLRFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               ++ + +FG+  + D  L+      + + +E  + G+ +       G H+ QN L  
Sbjct: 239 ATAAVRNVQTFGQIGSEDSHLKMAVATDDGTSVEASILGQDVSYGIGAPGAHLVQNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V+ L AD+     AL      +GRG++ R ++  G   LIDESYNANPASM+AA SV
Sbjct: 299 LTAVADLGADLQEGAAALGGMTAPKGRGEQCRLSVGGGEVQLIDESYNANPASMRAAFSV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q +  G GRRIAV+GDM E+G  +   H +L   +    I  V+ +G H+ AL D LP
Sbjct: 359 LAQATLGGSGRRIAVIGDMRELGTDADQLHAELEGPIREAAIDRVFCAGPHMAALWDKLP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +  H+ E    L   +   +  GDVV++K S       L+  L +E+P 
Sbjct: 419 DDVKAHHREEAKDLIELLLKDVQPGDVVMIKGSLGTRMGPLVEALKKEYPP 469


>gi|86358454|ref|YP_470346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
 gi|86282556|gb|ABC91619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli CFN
           42]
          Length = 470

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 237/461 (51%), Positives = 319/461 (69%), Gaps = 3/461 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A+ G   G +P+G + GISIDSRSI   EAFFAIKG   DGHD+   A+  GA L+V
Sbjct: 1   MIAAMAGRPFGTLPEG-ITGISIDSRSITSGEAFFAIKGDRVDGHDYASMAMANGASLLV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+   + ++G L++P+  VDDVL AL +L  A+R RS A IIA+TGSVGKTTTKEML   
Sbjct: 60  VSEARLPAMGRLTVPMIVVDDVLAALGRLGQASRERSGAKIIAVTGSVGKTTTKEMLRHV 119

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  ++RP++AVI
Sbjct: 120 LSPSGKVHASVASFNNHWGVPLTLARMPDDTDYGVFEVGMNHPGEIRPLVAMIRPYVAVI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + +LG++ I+S
Sbjct: 180 TTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQSLGVEHIHS 239

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+   A+F+L ++    E S + + + G+++EV     G H+A+N L  LG+V I+ AD
Sbjct: 240 FGQHAKAEFRLAEFNGSDENSTLWLTIGGETLEVAIGAPGRHIAENALAALGVVRIVGAD 299

Query: 310 VDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           ++ AI AL+   P++GRGKR+R       G FTLIDESYNANPASM+AAI++L+   P G
Sbjct: 300 MEKAIAALATLKPEKGRGKRHRLSMGGGNGSFTLIDESYNANPASMRAAIALLAAAEPTG 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLGDM EMGE ++  H DLA  L    I HVWL+G  + ALK++LP S+HV Y 
Sbjct: 360 RGRRIAVLGDMLEMGEYAEKVHTDLAGPLLAAGIEHVWLAGADMAALKESLPESVHVEYR 419

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           E    L  ++ +S+  GDV++VKSS   GF +++  LL++F
Sbjct: 420 EKTSELTEYVLNSVAPGDVLMVKSSLGIGFGKIVAALLDKF 460


>gi|256752931|ref|ZP_05493762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748186|gb|EEU61259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 461

 Score =  290 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 226/472 (47%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D V  +   S+ V  V++ L AL+K+A     +     IA+TGS GK
Sbjct: 60  IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYIKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+ K  D      ++  +     ++ +    E+     G H   N L  
Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKDIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P    GK     + +G   +ID+ YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQP----GKMRLNIIEKGDIKIIDDVYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +    +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD ++VK S      +++  L E 
Sbjct: 408 VCGMKGNNIFVCNTNEEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459


>gi|319408828|emb|CBI82485.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           schoenbuchensis R1]
          Length = 473

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 213/472 (45%), Positives = 293/472 (62%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL  + G S+G +P+   +GISIDSRS+   + FF IKG   DGHDF   A
Sbjct: 1   MTVLWDKQTLLSVMNGLSVGCLPET-FSGISIDSRSLIEGDIFFCIKGNSLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGAG++VV  + +A +  L+ P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YAKGAGVLVVAQNRLAEMKMLAAPLIVVPDVLKALEKLAQAARERSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ + YA +GS+NN  GVPLTLARMP D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALGTVGRVYANLGSFNNCWGVPLTLARMPADSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 180 LVRPHVALITHIAAGHIGFFKNLEEIADAKAEIFEGLDDEGVALLNADSHFFSRLVQKAE 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S+ A++Q ++    ++ S M +    + + V     G H+ QN+L  L
Sbjct: 240 QCGVKKILSFGESQGANYQAKEIHLLTDCSCMTMHFSNQDITVKIGAPGRHIVQNILGVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
            +  ++ AD+     AL+ F   +GRG RYR +L  G    + + SYNANPASM+AA+ +
Sbjct: 300 AVCDVVGADLTRVSLALNCFSLPKGRGNRYRLSLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GR+IA+LGDM E+G  S+  H DL + + +   + V+L G  +  L D L 
Sbjct: 360 LAAGPVGTRGRKIAILGDMLELGVYSEKLHRDLVKPICISGANPVFLVGKAMKFLADELS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V+YSE ++ L   I   + +GD++++KSS+S G  R++  LL+ +  I
Sbjct: 420 TYIKVYYSEYIEELLPLILQEISEGDLIMIKSSHSVGLSRIVVALLDRYKKI 471


>gi|319782844|ref|YP_004142320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168732|gb|ADV12270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 485

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 217/478 (45%), Positives = 297/478 (62%), Gaps = 9/478 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   L+ A+ G  +G +P G ++GISIDSRS+ P +AFFAIKG   DGHDF   A
Sbjct: 1   MSLLWTSEALVAAMDGRPLGPMPDG-ISGISIDSRSLQPGDAFFAIKGEAMDGHDFATAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG++VV    + S+G L+ P+  V+DVL AL KL VA+R RS A IIA+TGS GKT
Sbjct: 60  IKAGAGVLVVAEGKLPSLGRLTAPIIVVEDVLVALEKLGVASRARSSAKIIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A   S+NNH GVPLTLARMP D D+ +FE+GM+H  EIR L  
Sbjct: 120 TTKEALRHVLQAVGKVHASAQSFNNHWGVPLTLARMPDDCDYAVFEIGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A++T IA AHL  F  ++EIA AKAEIFEGLE  G   LN DD+ F+LL   +H
Sbjct: 180 MVRPHVAIVTMIAAAHLGFFRNLDEIAKAKAEIFEGLEPEGAAVLNRDDARFKLLDKMAH 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G++ +Y FG++  + F+L K +  ++ S +  ++ G  +       G HM QN+L  L
Sbjct: 240 AAGVEHVYGFGENARSTFKLTKCELHADHSDITARIGGHEVTARIGAPGRHMVQNVLAVL 299

Query: 301 GIVSILTADVDTAIKALSV--------FHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           G   ++ AD+D    AL+                      +   G  TLIDESYNANPAS
Sbjct: 300 GAAHLVGADLDKVASALADLSAERGRGKRHVLRHPGGSTSSHPGGLITLIDESYNANPAS 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+++L+     GEGRRIAVLGDM E+G+ S   H  LA+++       V+L G  + 
Sbjct: 360 MAAAMALLNATPVTGEGRRIAVLGDMLELGDHSTKLHAALADLIVGTGTQTVFLGGPEMR 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           AL +ALP  I   Y   ++ L   + ++L  GDVV++KSS   GF +L++ LL +FPA
Sbjct: 420 ALAEALPADIKTEYRAGVEELKPVLLAALKPGDVVMIKSSKGIGFAKLVDALLGKFPA 477


>gi|167037224|ref|YP_001664802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300914677|ref|ZP_07131993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307724089|ref|YP_003903840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|320115643|ref|YP_004185802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856058|gb|ABY94466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300889612|gb|EFK84758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X561]
 gi|307581150|gb|ADN54549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X513]
 gi|319928734|gb|ADV79419.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 461

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 220/472 (46%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GK
Sbjct: 60  IDKGASAVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIAEPQVAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+ K  D      ++  +     ++ +  + E+     G H   N L  
Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      +V+   +AL  F P + R    +    +         YNANP SMKAA+SV
Sbjct: 295 ICVGLEFGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD----VYNANPDSMKAALSV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +    +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDLPAKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T   +   ++  + +GD ++VK S      +++  L E 
Sbjct: 408 VCGMKENNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 459


>gi|118590896|ref|ZP_01548296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
 gi|118436418|gb|EAV43059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Stappia
           aggregata IAM 12614]
          Length = 476

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 202/471 (42%), Positives = 277/471 (58%), Gaps = 3/471 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ PLWT    ++A  G   G      + GISIDSR++ P +AF AI G   DGHD+++ 
Sbjct: 1   MSDPLWTLDAFVEAAGGRLQGDAG-AEITGISIDSRTLEPGDAFVAITGDRLDGHDYVVS 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA + +V  D +  +         VDD L AL K+ VAAR RS A I+A+TGSVGK
Sbjct: 60  AMEAGASVALVGEDRLPDL-PADGRYVVVDDPLEALRKIGVAARDRSNARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L + L+   K +A + S+NNH GVPLTLARMP D DFG+FE+GM+H GEI  L 
Sbjct: 119 TGTKEALRLTLAESGKVHASVASFNNHWGVPLTLARMPADADFGVFEIGMNHAGEISPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+ +ITT+ P HL  F  +E+IA AKAEIF+GLE  G   LN D+  F+LLK  +
Sbjct: 179 KMVRPHVVIITTVQPVHLQFFDSVEQIAKAKAEIFDGLEPGGIAILNKDNLQFDLLKFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G+  I++FG+  +AD  L+K       S ++  + G+ +       G H  +N L  
Sbjct: 239 AAAGVSKIHTFGEDLSADSHLQKAVSYPAGSSVDACILGQEITYKIGASGKHHVKNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L AD+  A  AL      +GRG+  R  + +G F LIDESYNANPASMKAA++V
Sbjct: 299 LTAVVDLGADLAKAGLALDAMRAPKGRGEVTRLPMQKGEFNLIDESYNANPASMKAALAV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +      GRRIAV+GDM E+G  +   H +L + ++  NI  V+ +G H+ AL   LP
Sbjct: 359 LGEAPVTRPGRRIAVIGDMRELGSDADRLHAELLQPITDANIDAVYCAGPHMHALWKLLP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +  HY E    L   + S +  GDVV++K S       L+  L +E+P 
Sbjct: 419 HDLRGHYCEEAKDLEDVLLSDVRSGDVVMIKGSLGTRMGPLVEALKKEYPP 469


>gi|160933544|ref|ZP_02080932.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
 gi|156867421|gb|EDO60793.1| hypothetical protein CLOLEP_02395 [Clostridium leptum DSM 753]
          Length = 461

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 208/472 (44%), Gaps = 14/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+    +++ A+ G      P   V  +S +SR + P   F  I G   D H FI  A
Sbjct: 1   MEPI-RICEIVTAVGGALWKGNPNAEVTSVSTNSRELEPGALFVPIVGEKVDAHRFIPMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA       +       L   V  V D   AL + A   R R    ++ +TGSVGK+
Sbjct: 60  LDTGAAACFTQQEPEEGFKYLDGAVIRVGDTQKALQEFAAWYRKRFTLPVVGVTGSVGKS 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEM+  ALS  K+ +   G+YN+ IG+PLT+  +    +  + E+GMS+ GE+  L+ 
Sbjct: 120 STKEMIAAALSQGKRVHKTAGNYNSQIGLPLTVFGLDHTHEIAVIEMGMSNFGEMERLSA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P  AV+T I  +H+      E I + K  I + + + G ++LN DD   + L+    
Sbjct: 180 IASPTSAVVTNIGISHIEQLKTQENIRAEKLHIADTIGEQGALYLNGDDPMLQQLRESYT 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +     +G   + D++        + +  E+     + +++   +G H   N L  +
Sbjct: 240 GKIVW----YGMESDCDYRAVNIDTVKDCTRFELHAPFGAHKIMIPALGLHNVSNALAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       +D     L  +          +        T+ID+SYNA+P S+K+ I VL
Sbjct: 296 AVAYDQGLTLDDIRCGLLTYEGL----AMRQQIHELDKITVIDDSYNASPDSIKSGIGVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             ++    G++IAVL DM E+GE S   H++L    +   +  V   G     + +    
Sbjct: 352 --MAVKSTGKKIAVLADMLELGERSAQAHLELGAYAAASGVDAVLTVGREAEKIAEGAAE 409

Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                 V    T D  F  ++  L DGD V+VK S       ++  LL ++ 
Sbjct: 410 ESRKILVKACGTNDEAFAELEKILNDGDCVLVKGSRGMHTDEIVQKLLTKYQ 461


>gi|114704926|ref|ZP_01437834.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
 gi|114539711|gb|EAU42831.1| UDP-MurNAc-pentapeptide synthetase [Fulvimarina pelagi HTCC2506]
          Length = 505

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 202/470 (42%), Positives = 287/470 (61%), Gaps = 2/470 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    L++A++   +G+   G + GISIDSRS+   +AFFAI G  +DGHDF+ +A + 
Sbjct: 5   LWETGVLIEAMRARPVGMDLPGGITGISIDSRSLKEGDAFFAIAGDRFDGHDFLTNARRA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV+   + ++G +  P+  VDDVL AL +LA AAR RSKA IIA+TGSVGKTTTK
Sbjct: 65  GAALHVVSEKRLPALGRMQAPMLVVDDVLAALGRLAEAARARSKAKIIAVTGSVGKTTTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS+    +A + S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L  LVR
Sbjct: 125 EALRQGLSACGSVHASVASFNNHWGVPLSLARLPADSRFAIFEIGMNHPGEIRPLVKLVR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH A++T IA AHL +F  ++EIA AKAEIFEG+   G+  +N DD+    L A + A G
Sbjct: 185 PHAAIVTLIAAAHLGHFRDLDEIADAKAEIFEGIVPGGSAIINADDAKCMRLAAAAKAAG 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  + +FG+++ ADF++ ++   +E + +   + G+ + V     G H AQN L  LG  
Sbjct: 245 VTNVLTFGEAEGADFRMTEYDPDAEGAALIADIAGQEVYVRLSMPGRHFAQNTLCVLGAA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +  AD+    +AL+ +   +GRG+R++      G   L D+SYNANPASM+AAI  L+ 
Sbjct: 305 HVAGADIAKVAEALAEWRAMKGRGERFQLPMPGGGEIILFDDSYNANPASMRAAIETLAN 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421
                 GRRIAVLGDM E+G  S + H +LAE L    I+ V L G  +  L +AL    
Sbjct: 365 AKLSENGRRIAVLGDMKELGGHSPTLHAELAEPLKDAGIARVLLVGEEIKPLAEALGDEE 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           I     +T       + S +  GD ++VK+S S G  +++  L++ +P I
Sbjct: 425 IECTTHKTPTEAEEQLFSDMRAGDAIMVKASRSIGLEKVVAALVDRYPPI 474


>gi|167040636|ref|YP_001663621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
 gi|166854876|gb|ABY93285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermoanaerobacter sp. X514]
          Length = 460

 Score =  288 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 218/466 (46%), Gaps = 17/466 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A+ KGA 
Sbjct: 5   IDEIVRATEGKLIKGNLKDKVMGISTDSRKVKKDELFIPLKGEKYDGEDFVKDAIDKGAS 64

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            V+    D V  +   S+ V  V++ L AL+K+A   R +     IA+TGS GKTTTK+M
Sbjct: 65  AVITARLDNVECLKDFSVNVIYVNETLEALHKIASYYRKKFNIPFIAVTGSSGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G++NN IG+PLT+  +       + E+GM+  GEIR L ++  P 
Sbjct: 125 IAQILSKKYKVLKTEGNFNNEIGLPLTIFNLEDTHQIAVVEMGMNGFGEIRRLKNIAEPQ 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  +  +   +
Sbjct: 185 VAVFTNIGVAHIEKLGSRENILKAKTELIENFKEENVIVLNADDDMLSKIPLQYSSKYYR 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G+ K  D      ++  +     ++ +  + E+     G H   N L  + +   
Sbjct: 245 YGIKSGEIKACD-----IEKEEKDIKYTLKYKNLAKEIKLSVPGIHNVYNSLAAICVGLE 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +V+   +AL  F P + R    +    +         YNANP SMKAA+SVL  +  
Sbjct: 300 FGINVEDMAEALKDFQPGKMRLNIIKIGDIKIIDD----VYNANPDSMKAALSVLRDLPA 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RS 421
             +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +       + 
Sbjct: 356 KRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGDMSKYIAEESKVCGMKE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++    T   +   ++  + +GD ++VK S      +++  L E 
Sbjct: 413 NNIFVCNTNKEVNEILKDIIKEGDSILVKGSRGMKMEQIVQFLQER 458


>gi|220931748|ref|YP_002508656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
 gi|219993058|gb|ACL69661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halothermothrix orenii H 168]
          Length = 461

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 210/465 (45%), Gaps = 14/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +  ++  A+ G  I   P+  +  ISIDSR+I P + F AI G  +DGH FI  A
Sbjct: 1   MIPM-SLAEIRNAVSGKIIQGDPKSKITDISIDSRTINPGDMFVAIIGERFDGHSFIPEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           V KGA  ++V+  + A  G   + +  V+D   AL  LA   R+  K  T+I ITGS GK
Sbjct: 60  VSKGARALIVDHSIKAYPG---VGIILVEDTTRALQDLARYHRMLIKGLTVIGITGSAGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L          G+ NN+ G+PLTL  +  D +  + E+GMS LGEI  L 
Sbjct: 117 TTTKDMIASVLKEKYNVTKTRGNLNNYYGLPLTLLSLDGDEEIAVLEMGMSKLGEIELLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT + P HL N   +  +A  K E+ EGL   G   LNYD+ +   +K   
Sbjct: 177 SISKPDIGVITNVGPTHLENLKTVGNVARGKRELIEGLPTNGLAILNYDNKYVRDMKD-Y 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   Y F    +   +  K  + ++        + +   +     G H   N L  
Sbjct: 236 VEGKKVIYYGFSPEADVYAEHIKVDEKNKNISFIAHYKTEKERITLQKPGKHNVYNALAA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L  D       L      +    R+         TLI+++YNANP SMKAAI  
Sbjct: 296 IAVARYLRVDWGGIKNGLYN---IDLSSLRWDVRDLGNEITLINDTYNANPLSMKAAIEA 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              I+       I VLG M E+G++ +  H+DL   ++  N+  +   G        +  
Sbjct: 353 TFDIAQER---VITVLGGMLELGDMEEKAHVDLGRYVAERNVDVLITVGELGRLTARSAE 409

Query: 420 RS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +    +V+ ++        +   +  GD ++VK S       ++ 
Sbjct: 410 KEGMKNVYQADNNQEASRVLLDLIKKGDTILVKGSRGNKMEEIVK 454


>gi|220927933|ref|YP_002504842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
 gi|219998261|gb|ACL74862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulolyticum H10]
          Length = 459

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 17/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   +   +L++A+ G  +   P     G++ DSR +     F  + G  +DGHD+I   
Sbjct: 1   MIS-FNCSELIEAVGGKLLWGKPGINFYGVTTDSRKVTKDNLFIPLIGEKFDGHDYIEQC 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA + + +  +             VDD   AL  LA   R +    ++ ITGSVGKT
Sbjct: 60  FNAGATVCLTSKQIPTV---TGCTAILVDDTAKALRDLAAWYRRKFDIPVVGITGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+M++  LS   K     G++NN IG+PLT+  +    +  + E+GMS  GEI  LT 
Sbjct: 117 STKDMVSCVLSQQYKVLKTQGNFNNEIGLPLTVFNIDYSHEAAVIEMGMSGFGEISRLTA 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPHIA+IT I  +H+      E I  AK EI E L+K G + LN DD     LK K  
Sbjct: 177 IARPHIAIITNIGVSHIEKLGSQEGILKAKLEILEELDKDGLVVLNGDDPLLSSLKGKLS 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    + G    A     K +   + +  E+ +      V     G H   N L  +
Sbjct: 237 FRTVFYGMNVGSDYTALNYQPKGE---QGTTFEISVNDCLYNVEIPVPGIHNVYNALAAI 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL
Sbjct: 294 AAGIEMKIPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +IS       IAVLGDM EMG++S+  H  + + +    I+++   G     +  A+  
Sbjct: 350 QEISSESRS--IAVLGDMFEMGDMSKDMHYSVGDFIKNKKINYLVTVGLDSRMISQAVAD 407

Query: 421 ----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  +H+ E       +I   ++ GD +++K S       + + +++
Sbjct: 408 YGNSQTEIHHFENNKEALKYILEIVMPGDYILIKGSRGMKMEEIADGIMK 457


>gi|163760794|ref|ZP_02167874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282116|gb|EDQ32407.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hoeflea phototrophica DFL-43]
          Length = 477

 Score =  287 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 215/471 (45%), Positives = 298/471 (63%), Gaps = 1/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A+ G  +G +P G V GISIDSR++   +AFFAIKG  +DGHDF   A
Sbjct: 1   MSLLWTVQEMTEAMDGRPLGNLPDG-VTGISIDSRTVGEGDAFFAIKGDKFDGHDFASAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV    + ++G L+ P+  V+DVL AL  L  AAR RS+A IIAITGSVGKT
Sbjct: 60  IATGAALLVVAEAKLPALGRLTAPMIVVNDVLSALEDLGRAARARSEAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           ++KEML  AL    + +A   S+NNH GVPLTLARMP    +G+FE+GM+H  EIR L  
Sbjct: 120 SSKEMLRRALEPSGEVHASAASFNNHWGVPLTLARMPASAQYGVFEVGMNHPDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+A+ITTIA AHL NF  + EIA+AKAEI EG+ K G + LN D+  F  LK ++ 
Sbjct: 180 MVRPHVAIITTIAAAHLGNFKNLTEIAAAKAEIMEGVVKNGHVLLNRDNEKFSWLKKRAS 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L    + +FG+   AD++L   K  ++ S +  ++    + V     G H+ QN L  L
Sbjct: 240 ELSSAKVLAFGEHAKADYRLLNCKLLADCSTITARIGKDDVVVKIGAPGRHLVQNALAVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G V +  AD+  A  AL+    ++GRG R+  +++ G F LIDESYNANPASM+AA+ +L
Sbjct: 300 GAVQLAGADLAKASHALAAISAEKGRGARHELSIDGGSFVLIDESYNANPASMRAALELL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRRIAVLGDM EMG+ ++  H +LAE +   +   V LSG  + AL+D L  
Sbjct: 360 RDTPVRLRGRRIAVLGDMLEMGKFAERVHRELAEPVRQAHADMVCLSGSEMKALRDELGN 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +   Y +T D L   +++ L DGDVV+VKSS   GF R++  LL+++P +
Sbjct: 420 EVETVYRDTADDLADHLKNVLRDGDVVMVKSSLGIGFGRIVKALLDKYPVL 470


>gi|332982163|ref|YP_004463604.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
 gi|332699841|gb|AEE96782.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Mahella
           australiensis 50-1 BON]
          Length = 464

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 210/466 (45%), Gaps = 16/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++++A  G  I       +NG+S DSR++ P + F A+ G  YDGHDFI +AV  G
Sbjct: 3   LTVSEVIEATGGQLIAGDKWRIINGVSTDSRTVKPGQLFIALIGERYDGHDFIDNAVTNG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++ D         IP+  V+D L AL +LA   R     T++AITGS GKTTTKE
Sbjct: 63  ASAVMLSKDTADW----DIPIIKVEDTLEALKRLAAYYRRMFYLTVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +   LS         G+ NN IG+PLT+  +     + + E+GMS LGEI  L  + RP
Sbjct: 119 FIYAVLSQKYNVLKNRGNLNNQIGLPLTVFDINPHHQYAVLEMGMSALGEIHDLADIARP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HI VIT I  +H+      + I  AK E+F+         LN DD     L    H++  
Sbjct: 179 HIGVITNIGLSHIEKLGNQQNILRAKLELFDFFGDNDVAVLNGDDPLLCTL----HSVLP 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  F      D ++   +      +    +         +        N+  +L  V 
Sbjct: 235 CRVLYFSTRGKGDIKVLNIRLYKNGYYCYTAVLPDGQREDIYLNIAGFH-NVYNSLAAVL 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +         +  +         +R R         LID++YNANP SM+AAI VL  + 
Sbjct: 294 VGMEANVPLKQIKAGIESLYDTPQRLRMFQIYPDIQLIDDTYNANPDSMRAAIEVLCDLD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420
              +   IAVLGDM E+G ++++ H +L  +++   I  +   G     + D        
Sbjct: 354 SARK---IAVLGDMLELGGIAETAHTELGRIVAQKRIDVLVTVGRLAHFIADGAEASGMD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +++   + D    ++   +  GD +++K S+      ++  L E
Sbjct: 411 AHNIYRFNSNDDAISWLDEHITHGDAILIKGSHGMHMDEIVKYLQE 456


>gi|15965933|ref|NP_386286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Sinorhizobium meliloti 1021]
 gi|307308243|ref|ZP_07587952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
 gi|15075202|emb|CAC46759.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti 1021]
 gi|306901241|gb|EFN31847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti BL225C]
          Length = 477

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 216/469 (46%), Positives = 306/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L   AR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|307319710|ref|ZP_07599135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
 gi|306894641|gb|EFN25402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sinorhizobium meliloti AK83]
          Length = 477

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 217/469 (46%), Positives = 307/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLAAMNGRPVGNLPEG-ITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   DFG+FE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+   G   +N D + ++LL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  ++SFG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 AAGVSHVHSFGANPRSEFRLAEFAGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    + +   P++GRG R+R  +  G  T+IDESYNANPASM+AAIS+L
Sbjct: 300 AAATLAGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIAVLGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPAPGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|289578677|ref|YP_003477304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
 gi|289528390|gb|ADD02742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter italicus Ab9]
          Length = 461

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 139/472 (29%), Positives = 226/472 (47%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A QG  I    +  + GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IAEIVRATQGKLIKGSLKDKIIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D +  +      +  V+D L AL+K+A   R +     +A+TGS GK
Sbjct: 60  MTKGAKAVLTARLDNIEYLKDFPFNIIYVNDTLEALHKIAYYYRKKFNIPFVAVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLLKILQQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+ K  D      ++  +     ++ +    E+     G H   N L  
Sbjct: 240 SSKYYRYGIKSGEIKACD-----IEKGEKGIEYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      DVD   +AL  F P    GK     + +G   +ID++YNANP SMKAA++V
Sbjct: 295 ICVGLEFGVDVDDMAEALKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L       +   IAVLGDM E+GE +   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDFPGKRK---IAVLGDMLELGEYAVEAHKEIGKLVADSHIDILITSGNTSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD+++VK S      +++  L E 
Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459


>gi|212638042|ref|YP_002314562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
 gi|212559522|gb|ACJ32577.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Anoxybacillus flavithermus WK1]
          Length = 458

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 126/468 (26%), Positives = 224/468 (47%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + +  D+   I G  I        ++G+S D+R+I     +  +KG  ++GH F+  
Sbjct: 1   MI-IRSLADIQTMIPGSIIDERYASVMIHGVSTDTRTIERGNLYVPLKGATFNGHQFVKE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A +KGA   + +           +P+  V+D L AL +LA A R + +A II +TGS GK
Sbjct: 60  AFEKGAAAALWSKH--EPNAPTDVPLIFVEDSLVALQQLAHAYRKQLRACIIGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L ++ +     G+ NNHIGVPLTL R+  + ++ + E+GMS  GEI  L+
Sbjct: 118 TTTKDMIASLLGTVYRVQKTEGNLNNHIGVPLTLLRLKEETEYAVVEMGMSGFGEIELLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P +++IT I  +HL      E IA+AK EI +GL++ G    + D+    LL+ + 
Sbjct: 178 TLAEPDVSIITNIGESHLQELGSREGIATAKFEIVKGLKRDGLFIYHGDEP---LLQTRV 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  + +FG +   D+     +  ++ +      +          +      +++  
Sbjct: 235 ENANLSHVQTFGMAPTNDYYPLDIRVQADGTT----FKVNRWPNETFRMPLLGRHHVMNA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +++              F        R          T+I+++YNA+P SM+AA+ +
Sbjct: 291 LAAIAVARFAFVDIDHIKEGFLRLSVTKMRTEVIKRSDGVTIINDAYNASPTSMRAALEL 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q++ + +   IA++GDM E+GE   +FH  + E++    I +V   G    A+ +   
Sbjct: 351 LGQLTGYRKK--IAIVGDMLELGEQEIAFHEQIGEMIDPQKIDYVLTYGERAKAIAERAS 408

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +      V   +    L   ++  +  GDV+++K+S       +I+LL
Sbjct: 409 KRFSEGRVRAYDDKSELAADVRGIIEAGDVILLKASRGMKLEEIISLL 456


>gi|296133663|ref|YP_003640910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296032241|gb|ADG83009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 458

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 204/464 (43%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  AI+   +          +  DSR I P   F A+KG  +D HDF+  A+Q G
Sbjct: 4   MTLGEIAGAIKARMVKGNVDRVYTQVCTDSRQIVPGSLFVALKGERFDAHDFVEQALQLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+  M   +    I    VDD L AL +LA   R +    ++A+TGS GKTTTK+
Sbjct: 64  AHGVIVSR-MQHDLPDGDI--LLVDDTLTALQQLARYNRKKFSGPVVAVTGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +       +G++NN IG+PLTL  +       + E+GM  LGEI FL  +  P
Sbjct: 121 MISALLETKYLVLKTLGNFNNEIGLPLTLLGLDESHGAVVVEMGMRGLGEIDFLARIACP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              VIT I   HL     +E IA AK E+   +   G   LN DD +       + A  I
Sbjct: 181 TAGVITNIGETHLERLGTVENIARAKTELLPHIPVGGYAVLNGDDPWQRKYAHLTRAKVI 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                      AD            +   V     +        G H   N L  + +  
Sbjct: 241 FYGMDHSNHVYADNIKCNMGA---GASFTVIRDKIAKVFHLPVPGRHNIYNALAAITVGL 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +  ++ L        R       ++     +I+++YNANPAS KAA+ +L+++ 
Sbjct: 298 QEGLSWEMCMEGLQNVVLSGMRL----QIIDCNGLKIINDTYNANPASSKAAVRILAEMP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
               G+++AVLGDM E+G+ +   H ++ E +    I  +   G   L + +A   +   
Sbjct: 354 --CAGKKVAVLGDMYELGQRTVQGHREVGETVQNLKIDILVTVGELALHIAEAAKAAGMD 411

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +++ S   +     + + L  GD+V+VK S      +++  +
Sbjct: 412 RKNIYVSRNNNEALEILNNILKAGDLVLVKGSRGMKMEKIVEGI 455


>gi|239616916|ref|YP_002940238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505747|gb|ACR79234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 468

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 120/475 (25%), Positives = 200/475 (42%), Gaps = 19/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   +++A  G  +   P   + GIS D+R+I   + F A++G  +DGH FI  A
Sbjct: 1   MEPI-SLSKIIEATGGTLLSGTPDVEIFGISTDTRTIHKGDLFVALEGERFDGHYFIDEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +V+ ++ +        +  V D L  L  +A   R      +IA+TGS GKT
Sbjct: 60  FKKGAIGAIVSREVESKNI-----IIKVRDTLKTLGDIAKIYREEFDIPVIAVTGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L+   KT    GSYNN +GVPLTL  M       + E+  + LG I+ L  
Sbjct: 115 TTKEMLGYILTREFKTVKAKGSYNNFVGVPLTLLEMDRHTQLAVLEMETNLLGGIKRLCE 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P + V+T I   HL      E +   K+E+ E L + G   LN DD +   +K    
Sbjct: 175 IAKPSVGVVTNIGDTHLQFLKTREGVYQEKSELVESLPEDGVAVLNADDPYVLKMKEI-- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K I +FG    ++F     +         +    +           +     +   
Sbjct: 233 -SRTKRIVTFGVENKSEFSASNIRVGDTFLEFTLNNNYRVKLNTISYCNVYNGLAAIAVS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +V  L+ +    I     F              R   N+    +I++ YNANP SM+ A
Sbjct: 292 HVVFGLSLEKVIDILKDFKFPSLRMELIEIPLIDRATSNEESVRIINDCYNANPQSMQEA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  + +++ +     IA+LG+M E+GE +  FH  + ++ +      +   G     +  
Sbjct: 352 LVAVGKMNSYTNK--IAILGEMLELGEKAPEFHYQIGKICADCGFDMLITVGDLAQYMAH 409

Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                     ++  S         +   L  GD+V++K S       ++  L + 
Sbjct: 410 GAEDEGMPRENIFVSVNNVEASDRLLRILRPGDIVLIKGSRGMKMEEIVERLRKR 464


>gi|49475859|ref|YP_033900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
 gi|49238667|emb|CAF27913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           henselae str. Houston-1]
          Length = 473

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 204/472 (43%), Positives = 299/472 (63%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G++IG +P+   +GISIDSR++   + FF IKG H DGHDF + A
Sbjct: 1   MKALWDKQALITAIDGYAIGEIPET-FSGISIDSRTLIEGDIFFCIKGHHLDGHDFAVQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA +++V  + +A +  +S P+  V DVL AL KLA AAR RSKA IIA+TGSVGKT
Sbjct: 60  YERGAAVLIVAENRLADMEKISAPLIVVSDVLQALEKLAQAARKRSKAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE+L   L+++ K +A   S NNH GVPLTLARMPV+ ++G+FE+GM+H  EIR L  
Sbjct: 120 TTKEVLKQVLATVGKVHANSASLNNHWGVPLTLARMPVESNYGVFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT I+ AH+  F  +EEIA AKAEIFEGL++ G   LN DD FF  L  K+ 
Sbjct: 180 LVHPHVVLITHISAAHMGFFKNLEEIADAKAEIFEGLDEEGIAVLNADDDFFPYLVQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG++KN+D+Q +  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCSVKRILSFGETKNSDYQAKDIRLLTDYSSMIVSISGQDRAMKIGAPGRHIIQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                +  D++  + +LS F P++GRG RYR +L  G    + + SYNANPASM+AA+ +
Sbjct: 300 AACDAIGVDLEPVLLSLSYFSPQKGRGVRYRLSLPSGGEFYLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      EGRRIA+LGDM E+G  S+  H DL + + L   + V+L G  +  L   L 
Sbjct: 360 LAIGPVGVEGRRIAILGDMLELGAYSEKLHRDLVKPVYLSGANPVFLFGEAMKFLATDLA 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   I + + +GD++++KSS+S     +++ LL+ +  +
Sbjct: 420 AYVKVHYAENIEKILPLILAEISNGDLLMIKSSHSLYSSDIVSALLDRYKVV 471


>gi|229194623|ref|ZP_04321420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228588844|gb|EEK46865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 458

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|188585926|ref|YP_001917471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350613|gb|ACB84883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 442

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 209/452 (46%), Gaps = 18/452 (3%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   + G S+DSR +   + F  + G   DGH+FI  A+  GA   +VN D+  S   
Sbjct: 2   GDPDTVITGFSVDSRYVKQGDMFVCLPGDKTDGHNFIDEAIDNGARGCLVNRDIELSRRH 61

Query: 81  LSIP--VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              P  V  V+D L AL ++A   R +   +++A+TGS+GKTTTK+M+   L+       
Sbjct: 62  SVHPPLVIKVNDTLMALQEIARKHRQKFGVSVVAVTGSIGKTTTKDMIASVLAEKYSILK 121

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G+ N+ IG+PL L  +       + E+GM++ GEI  L  L RP++ VIT IA +H+ 
Sbjct: 122 THGNLNSEIGLPLMLLELTQHHQVAVLEMGMNNQGEIARLCELARPNVGVITRIAESHIE 181

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E IA AK E+ E L   GT  LN DD++   L++K     +    + G     D 
Sbjct: 182 KLGSLENIAEAKGELLENLLPGGTAILNCDDNWVRRLRSKVPGEVLYYGLTDG-----DL 236

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +   +++  ++    KS ++    IG H   N L  + +  +   D+  +I+AL 
Sbjct: 237 SAYNVRVDKDKTNAKIMSNDKSEQLNLPLIGKHNLSNALAAIAVGRVFGLDLTQSIRALE 296

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R              +ID++YNAN  S  AA  VL+ +  +    RIAVLGDM
Sbjct: 297 GFTGTSMRN----QIKYHKDMIIIDDTYNANVQSTLAAFDVLTNLPLNR---RIAVLGDM 349

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLF 434
            E+G+ ++  H  + E        ++   G      ++A  +         +    +   
Sbjct: 350 FELGDYTEKAHKTVGEQAVNRGFDYLITVGELSKTTQEAADKLGMPEHQNIHVADREQAI 409

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             I   +  GD ++VK S      +++N LL+
Sbjct: 410 QRILQIVKSGDGILVKGSRGMAMEKIVNSLLK 441


>gi|291544488|emb|CBL17597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. 18P13]
          Length = 454

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 138/467 (29%), Positives = 212/467 (45%), Gaps = 20/467 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ QA+ G      P   V  IS D+R+I P   F A++G  +DGH F   A ++GA
Sbjct: 5   TLTEIAQAVGGTLSNC-PDCAVTEISTDTRTITPGCVFLALRGARFDGHTFARQACEQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+ +  +         P   VD    AL   A   R + +   + +TGSVGKTTTK M
Sbjct: 64  VAVISDHVIP------DCPCIVVDSTGKALLAFAAYYRRKFQPFFVGVTGSVGKTTTKNM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + + LS+  KT    G+ NN IG+P TL  +       + E+GMS  GEI  L+    P 
Sbjct: 118 IALVLSTHCKTLKTAGNLNNEIGLPKTLMGLDSTYKAAVVEMGMSDFGEISRLSKAAAPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H++     E I  AK EI +G+     + +N DD +   LK     L   
Sbjct: 178 IGVITNIGFSHIAQLKSQEGICRAKLEILDGMAADAPLVVNGDDPYLIPLK---TTLSRP 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K+  AD +  +    +  +  ++  QG    V    IG H   N      I  +
Sbjct: 235 VYTYGIKNAGADCRAERIVSENGCTSFDLCWQGTVTPVTLPCIGEHNVMNGAAAFCIGML 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + +    AL  + P        +        T+I + YNA+P SM+A++SVL Q+S 
Sbjct: 295 AGMEPEEIAGALRTYQP----DGMRQNIQQIDDKTVILDCYNASPDSMRASLSVLGQLSV 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHV 424
              GRRI VLGDM E+GE S+  H  +  +++   +  ++  G     +  +A  + + V
Sbjct: 351 --TGRRIGVLGDMLELGEQSRQLHRMVGGLVTPAQVDLLFCYGPESRYIAEEAAKQGVPV 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            +    + L   ++ SL  GD V+ K+S       +   L   FPA+
Sbjct: 409 QHFTEKEALTEQLRRSLQPGDAVLFKASRGMQLESVAKAL---FPAL 452


>gi|312143941|ref|YP_003995387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904592|gb|ADQ15033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halanaerobium sp. 'sapolanicus']
          Length = 457

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 227/469 (48%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + +A  G  I    +  +  I IDSR +   + F AI G   DGH+FI  A
Sbjct: 1   MESL-TLAQIAEAASGKIIKGKAEIKIKDIVIDSREVKKDDLFIAIIGEINDGHEFIDSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           V+ GA  V+V+  +       ++ V  VDD   AL  +A   R++ K   I AITGSVGK
Sbjct: 60  VENGAKAVIVDRQINDY---SNLAVIKVDDTTKALQDIAHYYRMKFKDLKIAAITGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+M+   L+   KT    G+YNN IG+PLTL R+    +F + E+GMS  GEI  L 
Sbjct: 117 TSTKDMIAAVLAQKYKTLKTSGNYNNQIGLPLTLLRLCSKDEFAVLEMGMSGFGEIELLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP IAVIT + PAH+     IE +A+AK E+ + L+K+GT  LNYD+ +   +    
Sbjct: 177 ELARPQIAVITNVGPAHIEQLGSIENVAAAKKELLDSLDKSGTAILNYDNEYTRKMAENF 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           ++  I   +S G                E+  +  Q +   ++   +  G H   N L  
Sbjct: 237 NSKLITFGFSAGADLQVIENKFNKDLNREEFKIIWQGK--KLKFYLNKPGKHNIYNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I  +   +       LS     +    R      +    +I++SYNANP S++AA+ V
Sbjct: 295 IAIGFLNNMNPKGIQDGLSK---IDFSDLRMEIKELENGAIVINDSYNANPISVRAALDV 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++    +   IAVL  M E+G++ +  H+++ E ++  NI  +   G     + +   
Sbjct: 352 LAEMKGKRK---IAVLASMLELGKMEKKAHLEIGEYIAKQNIDLLITVGEIAELIAEGAE 408

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           R+      ++          F++ +L   D++++K S S    +++  L
Sbjct: 409 RTAMPVEKIYSFADKASTLKFLKDNLKKDDLLLIKGSRSNQMEKIVAEL 457


>gi|228983492|ref|ZP_04143702.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228776236|gb|EEM24592.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 458

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 222/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G  +    +   + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTRLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|42779347|ref|NP_976594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206977070|ref|ZP_03237970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217957806|ref|YP_002336350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|222094006|ref|YP_002528057.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase [Bacillus
           cereus Q1]
 gi|229137076|ref|ZP_04265700.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|42735262|gb|AAS39202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus ATCC 10987]
 gi|206744719|gb|EDZ56126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|217064727|gb|ACJ78977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|221238055|gb|ACM10765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus Q1]
 gi|228646383|gb|EEL02593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|324324245|gb|ADY19505.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMTNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|297544897|ref|YP_003677199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842672|gb|ADH61188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 224/472 (47%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  I    +  V GIS DSR +   E F  +KG  YDG DF+  A
Sbjct: 1   MMELL-IAEIVRATEGKLIKGSLKDKVIGISTDSRKVKKDELFIPLKGEKYDGEDFVKDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + KGA  V+    D +  +      V  V+D L AL+K+A   R +     +A+TGS GK
Sbjct: 60  MTKGAKAVLTARLDNIEYLRDFPFNVIYVNDTLEALHKIASYYRKKFNIPFVAVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   K     G++NN IG+PLT+  +       + E+GMS  GEIR L 
Sbjct: 120 TTTKDMIAQILSKKYKVLKTEGNFNNEIGLPLTIFNLENTHQIAVVEMGMSGFGEIRRLK 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P +AV T I  AH+      E I  AK E+ E  ++   I LN DD     +  + 
Sbjct: 180 NIVKPQVAVFTNIGVAHIEKLGSRENILKAKTELIEDFKEENVIVLNADDDMLSKIPLQY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +   +     G+      +    ++  +     ++ +    E+     G H   N L  
Sbjct: 240 SSKYYRYGIKNGE-----IKACNIEKGEKGIKYTLKYKNLEKEIKLSIPGIHNVYNSLAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      DVD   + L  F P    GK     + +G   +ID++YNANP SMKAA++V
Sbjct: 295 ICVGLEFGVDVDDMAEVLKDFQP----GKMRLNIIEKGDIKIIDDAYNANPDSMKAALNV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L       +   IAVLGDM E+GE S   H ++ ++++  +I  +  SG     + +   
Sbjct: 351 LRDFPGKRK---IAVLGDMLELGEYSVEAHREIGKLVADSHIDILITSGNTSKYIAEESK 407

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +  ++    T + +   ++  + +GD+++VK S      +++  L E 
Sbjct: 408 VCGMKENNIFVCNTNEEVKEILKDIIKEGDLILVKGSRGMKMEQIVQFLQER 459


>gi|47567483|ref|ZP_00238195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
 gi|47555885|gb|EAL14224.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus G9241]
          Length = 458

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|229154006|ref|ZP_04282135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
 gi|228629527|gb|EEK86225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 4342]
          Length = 458

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|323701284|ref|ZP_08112959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533886|gb|EGB23750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 456

 Score =  284 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 216/466 (46%), Gaps = 18/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++     G  I   P   VNG+  DSR     + F A++G   DGHDF L A+++G
Sbjct: 4   YTIKEIAAVTGGTIIQGNPAAEVNGLCTDSRRAKNGDIFVAMRGRQVDGHDFALKAIEQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V            + V  V D + AL +LA   R R    ++A+TGS GKT+TK+
Sbjct: 64  ATALLVTK---TVTVPPQVAVIKVSDTIQALQQLAAHNRSRLNIPVVAVTGSNGKTSTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KT    G+YNN +G+PLTL  +       + E+GM   GEI  L  L +P
Sbjct: 121 MIAAVLNTRYKTLKTQGNYNNELGLPLTLLALDQTHQAAVVEMGMRGFGEIDLLARLAKP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL     ++ IA+AKAE+ + +   G   LN D        ++      
Sbjct: 181 TGAVITNIGEAHLELLGSVQNIAAAKAEVLDHIGAEGFAILNGDSPELRNQVSRCQGQ-- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +  +   D   R  +        ++   G + E+     G H   N +  +G+  
Sbjct: 239 --VWFYSINGQTDLVARNVRVEGRGVRYDLSYPGGTGEIYLPIPGSHNVMNSMAAVGVGL 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L       ++ L+       R       +     T+I++ YNANP+S KAA+ VL++++
Sbjct: 297 RLGIPFTDIVRGLAQVELTGMRL----EIIKANNMTVINDVYNANPSSTKAALKVLAEVA 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
           P   GR+IAVLG+M E+G L++S H ++ E  +L  ++ +   G           +    
Sbjct: 353 P---GRKIAVLGNMYELGALAESGHREVGEAAALRGVAQLVTVGDLARFTAQGAIKGGLP 409

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              VH+ +        ++  +  GD ++VK S S     ++  L+ 
Sbjct: 410 GDRVHHCDNNKLAIEVLRQVMQPGDTILVKGSRSMHMEEIVQALVN 455


>gi|90418198|ref|ZP_01226110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337870|gb|EAS51521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-d-alanyl
           -d- alanyl ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 503

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 211/472 (44%), Positives = 287/472 (60%), Gaps = 3/472 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN  LW    +  A+    +G +P   ++GISID+R++   +AFFAI+G  +DGHDF+  
Sbjct: 1   MNEALWDVDAMAAAMHARPLGDLP-AAISGISIDTRTLEAGDAFFAIQGDRFDGHDFLTA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA L VV+   + ++G +  P+  VDDVL A+++LA AAR RSKATI+A+TGSVGK
Sbjct: 60  ATKAGAALHVVSEQKLPALGRVQSPLLIVDDVLKAMSRLAEAARARSKATIVAVTGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE L   L++  K +A   S+NNH GVPL+LAR+P D  F IFE+GM+H GEIR L 
Sbjct: 120 TTTKEALRHGLAAEGKVHASAASFNNHWGVPLSLARLPRDARFAIFEIGMNHPGEIRPLV 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH+A+IT IAPAHL +F  ++EIA AKAEIFEGL   GT  LN DD     L   +
Sbjct: 180 KLVRPHLAIITLIAPAHLGHFRDLDEIAEAKAEIFEGLVSDGTAILNADDPQCGPLATMA 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+  I +FG+S  ADF+L  +    E S ME  + G+++ V     G HMAQN+L  
Sbjct: 240 RKAGVTEIRTFGESAGADFRLLSFAPTGEHSVMEANMGGETVRVELTSRGRHMAQNVLAV 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAIS 358
           LG  S+  AD+     AL  +   +GRG R    +  G    + + SYNANPASM+AA+ 
Sbjct: 300 LGAASLAHADLHRVAGALKDWRAVKGRGGRDLLPMPAGGHVELIDESYNANPASMRAALD 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS   P   GRRIAVLGDM E+G+ +   H  L E +    +  V+L+G  + AL D L
Sbjct: 360 VLSASRPGEGGRRIAVLGDMLELGDKAPGLHAGLVEPIEAAGVDLVFLAGDEMKALDDVL 419

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +   + E    L   +  ++  GDVV+VK+S S GF  L++ LL  +P 
Sbjct: 420 ESRVRREWHENAGELLESLLKTMRTGDVVMVKASKSIGFSPLVDKLLALYPP 471


>gi|196036054|ref|ZP_03103455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228925492|ref|ZP_04088586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228944045|ref|ZP_04106429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|195991423|gb|EDX55390.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus W]
 gi|228815716|gb|EEM61953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228834237|gb|EEM79780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 458

 Score =  283 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKHYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|297616977|ref|YP_003702136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144814|gb|ADI01571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 459

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 138/463 (29%), Positives = 220/463 (47%), Gaps = 13/463 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+ +AI+G+ I   P   + G+S++SR     + FFA+KG  +DGHDF+  A++ GA 
Sbjct: 5   LLDIARAIEGNIIQGRPDIEITGVSLNSRRSGHGDVFFALKGDRHDGHDFVPEALRNGAL 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             VV+  +    G     +  V DV  AL  LA   R R K  ++ +TGSVGKTTTK++ 
Sbjct: 65  AAVVSRPVSLPQGLGERGLILVRDVKKALQMLARWHRQRFKLHLVGVTGSVGKTTTKDLT 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  +T    G+YNN IGVPLTL R+    +  + E+ M +LGEI  L  +  P  
Sbjct: 125 ATCLEARFQTLKTEGNYNNEIGVPLTLLRLDHRYEACVVEMAMRNLGEIEELASIALPTC 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +I  + P HL N   +E IA AK E+F+ +++ G + +N D+        K     +  
Sbjct: 185 GIIVNVEPVHLENLGSMERIAQAKCELFKYVDERGFVAINGDNPLLVEAAEKYAVKKV-- 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              FG   N D +L      SE++ ++  L G++ E      G H+A N++   G+   L
Sbjct: 243 --RFGWGANCDDRLLDVNSSSEETRIKASLAGQAAEFCLPFPGSHLAYNVIAAAGVAVRL 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+      +  F P   R             T+ID+ YNANP SMKA + VLS ++  
Sbjct: 301 GVDLADIQSKIRSFSPSSRRLNIKTGLGG---ITIIDDCYNANPVSMKAGLEVLSDVAA- 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
               R+AVLGDM E+G      H ++    +   +  +   G     + +A   +     
Sbjct: 357 -GRYRVAVLGDMYELGSYEVQGHREVGYKAAELGVERLVTVGELARHIGEAAKEAGLDKE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +    +    +++S L    VV++K+S       ++  L 
Sbjct: 416 RILHFSDKELAIAYLKSDLPAEAVVLIKASRGMHMEDIVQELE 458


>gi|229089369|ref|ZP_04220645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228693969|gb|EEL47656.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 458

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIKGVSIDTRKIEKGNLYIPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|52144994|ref|YP_081835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
 gi|51978463|gb|AAU20013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           cereus E33L]
          Length = 458

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|229101038|ref|ZP_04231821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
 gi|228682380|gb|EEL36474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-28]
          Length = 458

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|163854033|ref|YP_001642076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
 gi|163665638|gb|ABY33005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium extorquens PA1]
          Length = 487

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 268/475 (56%), Gaps = 10/475 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MNDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A+ KGAG  VV          +  PV  V     D VL A+ +L +AAR R+ A IIA+
Sbjct: 59  AALDKGAGAAVVAEVRAKEFEGVG-PVLAVPGEGDDPVLDAMRRLGLAARARTGAAIIAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A + A     + +FG+ + AD    +     + S ++  + G  +       G H+A
Sbjct: 238 RLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS+
Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  
Sbjct: 358 RAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +ALP ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 418 LFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|326204089|ref|ZP_08193950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985856|gb|EGD46691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 459

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 218/463 (47%), Gaps = 18/463 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +L +A+ G  +   P     G++ DSR +     F  + G  +DGHD+I    + GA + 
Sbjct: 8   ELAEAVTGKLLWGEPDVTFFGVTTDSRKVTKASLFIPLIGEKFDGHDYIEQCFKAGASVC 67

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + +  +    G  ++    VDD   AL  LA   R +    ++ ITGSVGKT+TK+M++ 
Sbjct: 68  LTSKPIPEVAGCSAV---LVDDTAKALRDLAAWHRKKFDIPVVGITGSVGKTSTKDMVSC 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            LS         G++NN IG+PLT+  +    +  + E+GMS  GEI  LT + RP IA+
Sbjct: 125 VLSQKYSVLKTQGNFNNEIGLPLTVLNIDSSHETAVIEMGMSGFGEISRLTAIARPDIAI 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I  +H+      E I  AK EI EGL K G + LN DD   + LK K          
Sbjct: 185 ITNIGVSHIEKLGSQEGILKAKLEILEGLHKNGLVVLNGDDPLLKPLKGKL----PFRTV 240

Query: 249 SFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G    +D+    ++   E  +  E+ +      V     G H   N L  +     + 
Sbjct: 241 LYGMHGGSDYTASNYQTMGEQGTSFEITVNEAPYNVEIPVPGIHNVYNALAAIAAGIEMK 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  I  +  F P    G   +  +N     +I+++YNA+P SM+AAI+VL +IS   
Sbjct: 301 IPMEIIINGIKQFSP----GNMRQSIINHNGIKIINDAYNASPQSMQAAINVLEEISS-- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH-- 425
             R IAVLGDM EMG +S+  H  + E +    I+++   G     +  A+  S +    
Sbjct: 355 GSRSIAVLGDMFEMGNMSKDLHYSVGEFIKNKKINYIITVGQDSGMISQAVADSGNGEIK 414

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + E+      +I   ++ GD +++K S       + + +++
Sbjct: 415 LRHFESNKEALKYILGIVMPGDYILIKGSRGMKMEEIADGIMK 457


>gi|304317206|ref|YP_003852351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778708|gb|ADL69267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 223/470 (47%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +  +++ A  G  +       ++GIS DSR+I   E F  +KG +++G  F+  A
Sbjct: 1   MI--LSVKEIIDATSGKLLSGDINSTISGISTDSRTIKEGELFIPLKGENFNGEMFVEDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ G    +  +  V ++G  + PV  VD+   AL+K+A   R + +   IA+TGS GKT
Sbjct: 59  LKIG-SASLTES--VNNVGRYNKPVIFVDNTKEALHKIAKYYREKFQIPFIAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS         G++NN IG+PLT+ R+    D  I E+GMS  GEIR L +
Sbjct: 116 TTKDMIYDVLSMKYNVLKTQGNFNNEIGLPLTIFRLNKKHDMAIVEMGMSGFGEIRRLKN 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P++AV T I  AH+      E I  AK+E+ E  ++  T+ LN DD     L  K  
Sbjct: 176 IADPNVAVYTNIGVAHIEKLGSRENILKAKSELVENFKEGYTVILNADDDMLVKLTNK-- 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   ++G   N D +    +   E    +V + G  M+V  +  G H   N L  +
Sbjct: 234 --KGPQYITYGI-DNGDVKAFDIEYKEESVKYKVIIDGYMMDVELNVPGKHNVYNSLAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I      + +   KAL+ F P   R       L+     +I+++YNANP SM    + L
Sbjct: 291 CIGIKFGVNKEDMRKALAEFQPSAMRL----NILDVSGIKVINDAYNANPGSM---KAAL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +  + + R++AVLG+M E+GE S   H ++ + +   NI  +   G     + +   +
Sbjct: 344 SVLKEYKDRRKVAVLGNMLELGEYSDLAHEEVGKYVKDENIDVLITVGEFASKIAEGAIK 403

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S     +V   +     +  I+  + + DV ++K S       ++  L E
Sbjct: 404 SGMDVENVMICKNNVEAYEKIKKIMRNNDVFLIKGSRGMKMEEIVKFLQE 453


>gi|229113899|ref|ZP_04243332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
 gi|228669560|gb|EEL24969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-3]
          Length = 458

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|229094945|ref|ZP_04225948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
 gi|228688478|gb|EEL42353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-29]
          Length = 458

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT +  AHL +    E IA AK EI  GL++ G    N D+        + +    
Sbjct: 183 NAAIITNVGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTVINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|30260422|ref|NP_842799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Ames]
 gi|47525503|ref|YP_016852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183265|ref|YP_026517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alany
           l-D-alanyl ligase [Bacillus anthracis str. Sterne]
 gi|49481739|ref|YP_034573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|165871567|ref|ZP_02216213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167634197|ref|ZP_02392519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|167640356|ref|ZP_02398621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|170687740|ref|ZP_02878955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|170707905|ref|ZP_02898355.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|177653434|ref|ZP_02935644.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190567395|ref|ZP_03020309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196041090|ref|ZP_03108386.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218901439|ref|YP_002449273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225862288|ref|YP_002747666.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227812914|ref|YP_002812923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228912977|ref|ZP_04076621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228931739|ref|ZP_04094640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|229119902|ref|ZP_04249161.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|229182633|ref|ZP_04309879.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|229604728|ref|YP_002864873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|254686588|ref|ZP_05150447.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254723572|ref|ZP_05185359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A1055]
 gi|254734934|ref|ZP_05192646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254739719|ref|ZP_05197412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754910|ref|ZP_05206945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Vollum]
 gi|254756953|ref|ZP_05208981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Australia 94]
 gi|301051969|ref|YP_003790180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus anthracis CI]
 gi|30253743|gb|AAP24285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. Ames]
 gi|47500651|gb|AAT29327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177192|gb|AAT52568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|49333295|gb|AAT63941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164712671|gb|EDR18202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0488]
 gi|167511758|gb|EDR87139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0193]
 gi|167530511|gb|EDR93226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0442]
 gi|170127263|gb|EDS96140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0389]
 gi|170668267|gb|EDT19015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0465]
 gi|172081474|gb|EDT66547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0174]
 gi|190561522|gb|EDV15493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|196028025|gb|EDX66636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus NVH0597-99]
 gi|218539636|gb|ACK92034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH820]
 gi|225786513|gb|ACO26730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB102]
 gi|227006752|gb|ACP16495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. CDC 684]
 gi|228600841|gb|EEK58415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228663559|gb|EEL19140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228827919|gb|EEM73652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228846672|gb|EEM91680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229269136|gb|ACQ50773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus anthracis str. A0248]
 gi|300374138|gb|ADK03042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 458


>gi|229074284|ref|ZP_04207328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
 gi|228708836|gb|EEL60965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-18]
          Length = 458

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVKKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVAGLQEGGVFVYNGDEPLLTNRVPEMNLATE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYIPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKKDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFSQK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAEINFPG 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V      + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYHNKEELVKDLQAVVGNNDVVLVKASRGMKLEEVITMLK 458


>gi|196230912|ref|ZP_03129773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
 gi|196225253|gb|EDY19762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chthoniobacter flavus Ellin428]
          Length = 455

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 215/464 (46%), Gaps = 15/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           TF  + Q   G      PQG V  +  DSRS+   + F A++G  +DGH FI  A ++GA
Sbjct: 5   TFEKIAQWSAGRLAAGDPQGTVTSVCTDSRSLKAGDLFVALRGDKFDGHTFIAEASKRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V      +       V  V + L AL +L    R      +I +TGS GKT+TK++
Sbjct: 65  AGAIVEE--FPAELPPGFGVILVKNTLEALQRLGAEYRRSLDIQVIGLTGSNGKTSTKDL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    +     G+ NNHIG+PLTL R       G+FE+GM+H GEI  L  +  P 
Sbjct: 123 TASVLGENFQVTKTDGNLNNHIGLPLTLLRARGSDQIGVFEMGMNHAGEIAPLAAMAAPE 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT I  AH+      E IA  K  + E L  +GT+ L+ +D F   + A++ A  + 
Sbjct: 183 VGIITNIGMAHIEFLGSREAIAQEKGMLAEALPPSGTLILSAEDEFSPAIAARTKADVVL 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G+   +D +       +  +   +  +G++        G HM +N ++ +     
Sbjct: 243 AGINKGEVFASDLR-----PSASGTKFTINAEGRTAAAELSVPGEHMVRNAMLAVAAGRA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++     LS     +GR ++      Q    +ID++YNANP S+ AA+  L+ +  
Sbjct: 298 FGLSLEECAAGLSKLRLTKGRLEQKMIRGIQ----VIDDTYNANPDSVAAALRTLASMPA 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--H 423
              GRRIAVLG M E+G  ++  H  + EV +  ++  V   G     + +A  R     
Sbjct: 354 V--GRRIAVLGRMGELGVEAERGHRLVGEVAAQTHVDSVIGVGEEAQWITEAAWRGGVEK 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           V   E+ +     ++     GD+V++K S S    R++  LL +
Sbjct: 412 VVRVESTEEATKVLRDLAKAGDLVLIKGSRSARMERIVEGLLAQ 455


>gi|206901160|ref|YP_002250975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740263|gb|ACI19321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 465

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 148/471 (31%), Positives = 231/471 (49%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T  D+L+A +G  I    +  V+ IS DSR+I   + F A+KG  +DGH+F+  A
Sbjct: 1   MSLNLTVEDILKATKGILIKGNFKDKVDSISTDSRNIKKDDVFIALKGEKFDGHEFVKDA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+ D+     +    +  V D L AL  +A        A +I ITGS GKT
Sbjct: 61  ILKGAKGVIVSRDVNLEDKAF---IIKVQDTLKALQDIANYYLKTLNAKVIGITGSSGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK ++   L  I K Y    ++NN IGVPL++     DVDF + E+ M   GEI  L+ 
Sbjct: 118 TTKNLVGRLLKLIGKVYVSKENFNNEIGVPLSILEAEKDVDFLVLEMAMRGKGEISLLSK 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I VIT I  AH+      E I  AKAEIF+ +++ G   LN DDSF   +  + H
Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFDYIKEDGIAILNRDDSFSMKIYERLH 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  Y+FG  + +D +     +  E  +       GK + +       ++ +N+L  
Sbjct: 238 IKK----YTFGFEEGSDLRGLILDKGKESYTLGLYFPDGKRLTLSLPVYPLNIYRNLLSA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  ++ +    +K    F   + R    R   N+    +ID++YNANP SMK AI  
Sbjct: 294 LLVLWSISPESIYRVKEDFDFTLPKQRLDVKR---NKDGLVIIDDTYNANPDSMKTAIEY 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR++A+LGDM E+G  S   H ++ E +   NI  + L G  +    D   
Sbjct: 351 LELLDV--PGRKVALLGDMLELGNYSIEGHKEVIEEVLKRNIDVIVLYGQEMKKALDEFE 408

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +     VH+S+  + +   ++ SL   D V++K S +      +  L +E+
Sbjct: 409 KIDWSKVHWSDNPEEIKSILRRSLQPKDTVLIKGSRAMRMEDFVKFLEDEY 459


>gi|138893875|ref|YP_001124328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250551|ref|ZP_03149241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
 gi|134265388|gb|ABO65583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209900|gb|EDY04669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacillus
           sp. G11MC16]
          Length = 460

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 133/460 (28%), Positives = 209/460 (45%), Gaps = 14/460 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G           V+G+S D+R+I     +  + G  ++GH F+  A QKG
Sbjct: 5   TVQQIAEMTGGRYANPEWGNIAVSGVSTDTRTIQAGNLYVPLLGETFNGHAFVEEAAQKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+            S+P   VDD L AL +LA   R +    ++ +TGS GKTTTK+
Sbjct: 65  AAAVLWAE--AEGTPPESVPAIVVDDTLSALQRLATRYREQLGLKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LSS  +     G+ NNHIGVPLTL  +    D  + E+GMS  GEI  LT + RP
Sbjct: 123 MIAALLSSQYRVQKTEGNLNNHIGVPLTLLALEEGTDIAVVEMGMSGFGEIEQLTTIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AVIT I  AHL      E IA AK EI  GL+  G    + D+     L         
Sbjct: 183 NAAVITNIGEAHLQELGSREGIAKAKLEILSGLQGDGLFVYHGDEPLLAELV--PSLPLP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG+ ++ D+     +  +  +   V  +     +    +G H   N L  + +  
Sbjct: 241 QHVVTFGEGEDNDYYPTTVRIEAAGTS-FVINELPRQTLFIPVLGKHHVYNALAAIAVAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +    ALS     +    R      +  FT+I+++YNA+P SM+AA+ +L+++ 
Sbjct: 300 FFGVSWENIAAALSR---LQVTRMRTEVVKTKRGFTVINDAYNASPTSMRAALMLLTELD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRS 421
            + +   IAVLGDM E+G+    FH  + E+L    + +V+  G     +  A       
Sbjct: 357 GYRKK--IAVLGDMLELGDKEVEFHQAIGEMLRPEMVDYVFTYGPLARHIATAATPFFDQ 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             V   +    L   + S     D+V++K+S       L+
Sbjct: 415 GQVKAFDDKAALAEAVLSVATPDDIVLLKASRGMRLEELL 454


>gi|89055256|ref|YP_510707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
 gi|88864805|gb|ABD55682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jannaschia sp. CCS1]
          Length = 473

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 188/469 (40%), Positives = 256/469 (54%), Gaps = 12/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G S G        G+SID+R+I P + F A+     DGH+F+  A
Sbjct: 1   MI-LWTSADAASATGGTSQGT---WTATGVSIDTRTIEPGDLFVALAAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA   +VN       G  +     VDDVL AL +L  AAR R++A +IAITGSVGKT
Sbjct: 56  FQKGASAALVNH---VPDGMDAAKCLVVDDVLAALERLGTAARTRTQAKVIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K+ML  ALS   K +A + SYNNH GVPLTL+RMPVD D+ + E+GMS  GEI  L+ 
Sbjct: 113 TVKDMLKQALSGQGKIHAAVASYNNHWGVPLTLSRMPVDTDYAVIEIGMSAPGEIAPLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A+ITTIAPAHL  F  IE IA  KA IFEGLE  G   +  D     +L   + 
Sbjct: 173 MARPHVAMITTIAPAHLEAFGRIEGIAEEKASIFEGLEPDGVAIVPMDVETAPILAR-AA 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + +FG+++ AD +L       + + M +              G H A N +  L
Sbjct: 232 VAHAAEVVTFGEAEGADLRLTDVMLSDDSTVMRIATDEGGRLAKLSVSGRHYAVNAVGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAI 357
             V+   AD   A  ALS + P EGRG+R R  L++       LID+++NANP S+ A +
Sbjct: 292 CAVAASGADTTQAAMALSHWQPVEGRGQRERIQLSRTDDIAIELIDDAFNANPTSLAAGL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+ I+P   GRRIAVLGDM E+G+     H D+A + ++  +  V   G  ++ L  A
Sbjct: 352 EVLAAITPERGGRRIAVLGDMLELGDDGAKMHADIASLPAMEAVDIVHTCGPLMVHLDAA 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           LP +    ++ET   L   +  +L  GDVV+VK S       +++ L +
Sbjct: 412 LPGAKRGEHTETAQDLCRAVPRTLRPGDVVLVKGSKGSRVSLVVDALRK 460


>gi|297584142|ref|YP_003699922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
 gi|297142599|gb|ADH99356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           selenitireducens MLS10]
          Length = 456

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 203/464 (43%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   + + +     I I     + G+  D+R+I P   F  I G  ++GHDF+  A+ +G
Sbjct: 5   SVSTMAKWLNDADIINISEDTSIAGVCTDTRNILPGSLFIPIVGERFNGHDFVKQAIDRG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + +T    +     +P+  V+D + AL +LA        A +IA+TGS GKTTTK+
Sbjct: 65  AKAALWSTK--EADAPEDLPLIFVEDTIEALQQLAKHYLRTIGAKVIAVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+     ++ K     G++NNHIG+PLT+  +  D +  I E+GMS  GEI  L+ +  P
Sbjct: 123 MMAAVCETLWKVQKTQGNFNNHIGMPLTILALQKDTEAVILEMGMSGFGEIELLSQIAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E IA AK EI +GL+    +  + D+     L  +      
Sbjct: 183 DAAIITNIGESHLQDLGSRENIAKAKMEIAKGLKDGAPLVFHGDEPLLTPLTEQ----SP 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG      +  ++       +   V         +        A N+L  + +++
Sbjct: 239 HPLLTFGHRDTNRYFPQEIVHEPNGTRFNVGGNEIGSYFITV----LGAHNVLNAIAVIA 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K    F   +  G R          T+I+++YNA+P S+KAA+ ++  + 
Sbjct: 295 TARWFGIEDHKINLGFQSVQMTGMRLEQLSGADGVTIINDAYNASPTSVKAALELVQDMK 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
            H       VLGDM E+GE  + FH D   ++    I+ V+  G     ++         
Sbjct: 355 GHQNK--YVVLGDMLELGEAEEMFHFDTGAMIDPAAITGVFTYGTLSEHIQKGALRRFEE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +      L   ++S L   D+V++K S       +   LL
Sbjct: 413 ERAMHFSDKPALISHLKSVLKSDDLVLIKGSRGMKLEEVAEALL 456


>gi|169351723|ref|ZP_02868661.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
 gi|169291945|gb|EDS74078.1| hypothetical protein CLOSPI_02504 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 209/465 (44%), Gaps = 19/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A  G  I       + G S DSR ++P   +  I G  +DGHDFI +A + G
Sbjct: 1   MRVSEIVEATGGKLICGNSNQEITGFSQDSRKVSPGMMYIPIIGERFDGHDFIKNAFENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+   D    I      +  V D L AL  +A   R   K  ++ ITGSVGKT+T++
Sbjct: 61  ASAVISGRD----IDDSEHIIIKVKDTLKALQDMAHYLRKHRKVKVVGITGSVGKTSTRD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   +    KT    G+YNN IG+PLT+ R+  D    + E+GM+HL E+  L+ +  P
Sbjct: 117 MVYSVIKQQYKTLKTEGNYNNAIGLPLTILRL-KDEQVMVLEMGMNHLKEMEELSMIACP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+ IT +  AH+      E I  AK EI  G+     + +N D+     +      +G 
Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKMEIINGMSDNSMLVINNDNDMLSTV-----EVGR 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G     DF+        E S    + +GK   V     G H   N L+ + I  
Sbjct: 231 LNLIRVGIDNGVDFKANNVVLSDEGSTFNFEYKGKVYFVDVPVPGKHFVMNALIAIAIGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +  IK +  F     R        N    TLID +YNA+  SMK++I VL+  +
Sbjct: 291 QLDISPEQCIKGVKEFELTRNRMDIVELKNN---ITLIDGTYNASEDSMKSSIDVLATYT 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
                  IAVL DM E+G+ S+  H ++   ++   I  +   G     + DA  ++   
Sbjct: 348 RRK----IAVLADMLELGKYSEQLHRNIGMYVAKNKIDILVAVGKESKYIIDAASKAGVK 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + Y  + + +  ++   +   DV++ K SN      ++ L+ E+
Sbjct: 404 QICYCNSNEEVINYLGKIIQSNDVILFKGSNGMKLGNVVALMKEK 448


>gi|150397287|ref|YP_001327754.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
 gi|150028802|gb|ABR60919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sinorhizobium medicae WSM419]
          Length = 477

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 216/469 (46%), Positives = 308/469 (65%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+I   EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTSSDLLGAMNGRPVGNLPEG-ITGISIDSRTIGNGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A IIA+TGSVGKT
Sbjct: 60  LANGAALLVVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A + S+NNH GVPLTLARMP   D+G+FE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHMLSPLGRVHASVASFNNHWGVPLTLARMPETTDYGVFEIGMNHAGEIRPLTR 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ +++IA+AKAEIFEG+   G   +N D + +ELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDDIAAAKAEIFEGVVNGGHAVINRDSAQYELLEKAAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  ++ FG +  ++F+L ++   +E S +   + G+++E+     G H+A+N L  +
Sbjct: 240 TAGVSHVHFFGANPKSEFRLAEFAGGAEGSVLWAGVGGRTLEIAIGAPGRHIAENALAAI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++  AD D    +L+   P++GRG R+R  +  G+ TLIDESYNANPASM+AAI++L
Sbjct: 300 AAATLAGADTDRVAASLATMQPEKGRGLRHRLRMGAGYMTLIDESYNANPASMRAAITLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE S + H  LA  +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RDAEPSPGGRRIAILGDMLEMGEHSAAVHAALARPIVDAGIADVWLTGTEMAHLRDALPS 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + + +  L  +   ++  GDVV+VKSS S G  +++  LL+  P
Sbjct: 420 EVSVVHRDLVSDLTAYALGAVAAGDVVMVKSSKSTGCAKIVQALLDAHP 468


>gi|118475994|ref|YP_893145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196046213|ref|ZP_03113440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
 gi|118415219|gb|ABK83638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|196022958|gb|EDX61638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus 03BB108]
          Length = 458

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVIMMLK 458


>gi|317057681|ref|YP_004106148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
 gi|315449950|gb|ADU23514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ruminococcus
           albus 7]
          Length = 454

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 209/470 (44%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A++G   G      V  IS D+R+I     F A+KG ++DGHDF   A
Sbjct: 1   MEKLM-LSEIIEAVRGS-YGYPANVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  VV    +             VD    AL   A   R +    ++ ITGSVGKT
Sbjct: 59  MELGAIAVVTERPVD------GARCLIVDSTAQALLDSASYYRSKFDIPLVGITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++ 
Sbjct: 113 TTKEMIYSVLSRSFKTLKTEANHNNEVGMPKTLLELDNTHQAAVIEMGMNHKGEISRMST 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P I VIT I  +H+ N    E I  AK EI +G      + L  DD    LL     
Sbjct: 173 SCKPTICVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILCRDDK---LLAKAEI 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +  Y     K+ D         S+     +  + + +    + +G H  +N L   
Sbjct: 230 YGGRQVWYYSVSKKDCDVYASDIAADSKGISFTIHYKREKLNARINCLGEHNVKNALAAF 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +    + +  I  L+ F P        +  + +   T + + YNA P SMKA++SVL
Sbjct: 290 CAGAAAGMENEDIIAGLADFRP----EGMRQNIITENGMTFVLDCYNAAPDSMKASLSVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQIS    GRR AVLGDM E+G+ +  +H  + E +       +   G +     +    
Sbjct: 346 SQISVR--GRRFAVLGDMLELGKGTARYHRTVGEYVKASKTDVLLCYGKNSTYYIEGACD 403

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +  + E+ + L  +++++L +GD V+ K S       +   + +
Sbjct: 404 KGFDRENTKHFESHEELVEYLKANLKEGDAVLFKGSRGMKLEEVYEAIKQ 453


>gi|323706124|ref|ZP_08117693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534568|gb|EGB24350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 457

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  ++L A +G  +       V+GIS DSR+I P + F  +KG  ++G  FI  A
Sbjct: 1   MI--LTVKEILDATEGKLLSGDINICVSGISTDSRTIKPGDLFIPLKGERFNGEKFIDDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  G    +  +     I   + P+  V+D   AL+++A   R +     IA+TGS GKT
Sbjct: 59  LNVG-SASLTES--TNCIRHDNKPIIFVEDTKDALHRIAKYYRSKFNIPFIAVTGSSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS        IG++NN IG+PLTL  +  D D  + E+GMS  GEIR L +
Sbjct: 116 TTKDMIYDVLSMKYNVLKTIGNFNNEIGLPLTLFTLNDDHDMAVVEMGMSGFGEIRRLKN 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P++AV T I  AH+      E I  AK+E+ E  +   T+ +N DD     +  K  
Sbjct: 176 IASPNVAVYTNIGVAHIEKLGSRENILKAKSELIEDFKNGDTVVINADDDMLIKMLEK-- 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   ++G   N D +    +   E S  +V + G  ++V  +  G H   N L  +
Sbjct: 234 --KGPKFVTYGI-NNGDIKAFDIELNEESSKYKVLIDGYVLDVELNVPGKHNIYNSLAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I      + +   KAL+ F P   R       ++     +I++ YNANP+SM    + L
Sbjct: 291 CIGIQFDVNKEDIRKALAKFQPSAMRL----NIIDVAGIKIINDVYNANPSSM---KAAL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
           S +  + E R++AVLG+M E+G+     H ++ E +   +I  +   G + L + D    
Sbjct: 344 SVLGGYTERRKVAVLGNMLELGQYKDIAHREVGEYVKENDIDVLITVGDYALKIADGAIE 403

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + +V            I++ + + D+ +VK S       ++  L E
Sbjct: 404 KGMNNDNVFRCANNAEAIDVIKNIMKESDIFLVKGSRGMEMEEIVKFLQE 453


>gi|125973492|ref|YP_001037402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003308|ref|ZP_05428299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281417693|ref|ZP_06248713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|125713717|gb|ABN52209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992598|gb|EEU02689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 2360]
 gi|281409095|gb|EFB39353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum JW20]
 gi|316940271|gb|ADU74305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           thermocellum DSM 1313]
          Length = 457

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 145/462 (31%), Positives = 225/462 (48%), Gaps = 18/462 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++++A+ G  I          IS DSR+I   + F  + G  +DGH++I  A++ GA  
Sbjct: 7   EEVVKAVGGTLISGEVNTVFYNISTDSRNIKQGDLFIPLIGERFDGHNYIASALEHGALG 66

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +   +     G +   +  V D L AL  LAV  R + K   + ITGSVGKT+TKEM+ 
Sbjct: 67  SLTQKETEPFPGKV---LIKVSDTLKALRDLAVYYRQKFKIPFVGITGSVGKTSTKEMVA 123

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS   K     G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +V+P IA
Sbjct: 124 AVLSKGFKVLKNQGNFNNEIGVPLTIFNLDKSHEAAVVEMGMSGFGEISRLTSIVKPDIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +H+        I  AK EIFEGL + G   LN DD     L    + L     
Sbjct: 184 IITNIGVSHIEKLGSKNNILKAKMEIFEGLNEKGLAILNGDDKLLYGL----NNLLKFRT 239

Query: 248 YSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +G  +  D +    +    + S  +++++GK   V     G H   N L  + +   L
Sbjct: 240 VFYGMEEGLDLRAYNVESLGEKGSTFDIEIRGKEYRVRIPVPGIHNVYNALAGIAVGIEL 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +  ++ +  F P    GK     +N     +I+++YNA+P SM+AAI VL  IS  
Sbjct: 300 GIPPEKIVEGIEEFSP----GKMRLDIINYNGLKIINDAYNASPQSMEAAIDVLKDIS-- 353

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSI 422
           GEGR  AVLGDM E+GE S+S H+++ +  +   I ++   G +   +     +A  +  
Sbjct: 354 GEGRTFAVLGDMLELGEFSKSAHMEVGKYAASKGIDYIVAVGEYRSNIVRGAVEAGAKEE 413

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            V   +       F++  +  GDV++VK S       ++N+L
Sbjct: 414 KVFEFKDNMDAAKFLKEFVKSGDVLLVKGSRGMKMEEIVNIL 455


>gi|325679116|ref|ZP_08158710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
 gi|324109240|gb|EGC03462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus albus 8]
          Length = 454

 Score =  280 bits (716), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 207/470 (44%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    +++QA++G   G      V  IS D+R+I     F A+KG ++DGHDF   A
Sbjct: 1   MEKLM-LSEIIQAVRGS-YGYPADVEVKDISTDTRTITEGSLFIALKGANFDGHDFAAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  VV    +             VD    AL   A   R R    ++ ITGSVGKT
Sbjct: 59  MEAGAVAVVTERPVD------GARCLIVDSTSQALLDAASYYRSRFDIPLVGITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   +S   KT     ++NN +G+P TL  +       + E+GM+H GEI  ++ 
Sbjct: 113 TTKEMIWSVMSKGFKTLKTEANHNNEVGMPKTLLELDSTHQAAVIEMGMNHKGEISRMST 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P + VIT I  +H+ N    E I  AK EI +G      + L+ DD    +L     
Sbjct: 173 SCKPTVCVITNIGVSHIENLGSQEGILKAKMEILDGASADAPLILSRDD---RILSKVQV 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K  Y     K++D         S+     +    + +    + +G H  +N L   
Sbjct: 230 YGDRKIWYYSVSKKDSDVYASDIAADSKGISFTIHYAREKLPARINCLGEHNVKNALAAF 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + + L  D    I  L+ F P        +  + +   T I + YNA P SMKA++SVL
Sbjct: 290 CVGAALGMDNADIIAGLADFRP----EGMRQNIIEENGVTYILDCYNAAPDSMKASLSVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+S    GRRIAVLGDM E+G+ S  +H  + E +       +   G +     +    
Sbjct: 346 GQVSVR--GRRIAVLGDMLELGKGSTRYHRTVGEYVKNSKTDILLCFGKNSNYYIEGACD 403

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +  + ++ + L   ++  L +GD V+ K S       +   + +
Sbjct: 404 KGFDRANTAHFDSREELAEHLKGILKEGDAVLFKGSRGMKLEEVYEAIKQ 453


>gi|168186153|ref|ZP_02620788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295712|gb|EDS77845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum C str. Eklund]
          Length = 457

 Score =  280 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 221/465 (47%), Gaps = 13/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F +++ A+ G             IS D+R I     F A+KG +++ +D+I+ A  K
Sbjct: 3   LLKFEEIVNAVGGKVHINSGNHKYTNISTDTRKITKDSIFIALKGDNFNANDYIVDASDK 62

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+  +   S  + +  +  V++   AL  LA   R +    II ITGS GKT+T
Sbjct: 63  GANLCIVDEINFNDSDLNENTSIILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  + 
Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFEEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + +K+     
Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNKENDLLKNVKS----- 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + S G  K+ D+               V  + +         G H   N ++ +  
Sbjct: 238 NEYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHEDEKERFNIPVPGKHNILNSMLAIVA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + D   + +                + +  FT++D+SYNA+P SMKAAI V++ 
Sbjct: 298 GRSLDIEYDKLKQGIKNLS----VTSMRLDIVKKDGFTIVDDSYNASPDSMKAAIDVITT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I  + +   IA+LG M E+G+ S  FH ++AE     NI  +   G    A K+    ++
Sbjct: 354 IKGNRK---IAILGTMKELGDDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNNL 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +     T++    FI S+L + D+++VK+S S  F  ++N L ++
Sbjct: 411 NFKEFNTIEKAADFITSNLKEKDIILVKASRSMQFEYIVNKLKDK 455


>gi|311071127|ref|YP_003976050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
 gi|310871644|gb|ADP35119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus atrophaeus 1942]
          Length = 455

 Score =  279 bits (714), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 207/465 (44%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + ++G           + G++ D+R +   + F  + G +++GH F+  A + G
Sbjct: 5   TAKKIAEMVKGTLTDPTYENIVIQGVATDTRKLEKNQLFIPLTGENFNGHTFVGQAFENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N             V  VDD LGAL +L+ A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWNK--SEPNPPQDQAVILVDDTLGALQELSKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  LT L  P
Sbjct: 123 MLHAVLQTQFRVHKTEGNFNNHIGLPLTVLSMPEDTEVAVLEMGMSGKGEIDLLTRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL+K G +    D+               
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEITNGLKKDGILIYIGDEPLLNK------RSYS 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  +  D+QL   KQ  + +                 I      N+L  +   +
Sbjct: 237 CRTKTFGADEGNDYQLEDVKQTEDGT-----HFSIKGIDKTFFIPVLGKHNVLNAIAAFA 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R     ++   ++I+++YNA+P SMKAAI ++  + 
Sbjct: 292 AGIHFGITVENAAKGLSGLKVTGMRLELLKSESGVSIINDAYNASPTSMKAAIELIESM- 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G+++ VLGDM E+G+L Q FH +   V++   I +V+  G     +     R    
Sbjct: 351 -EGYGKKMLVLGDMLELGDLEQEFHTECGAVINPAAIDYVFTYGKLGAFIAAGAHRHFDQ 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   +      GD+++ K+S       ++  L++
Sbjct: 410 ERVSHFNDKAELLQAVAEKAEKGDLILFKASRGMKLEEIVKDLMK 454


>gi|16077524|ref|NP_388338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|3024202|sp|P96613|MURF_BACSU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1881267|dbj|BAA19294.1| ydbQ [Bacillus subtilis]
 gi|2632757|emb|CAB12264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 457

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 213/465 (45%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 5   TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +       +  V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +           
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D+QL+   Q  E +   ++    +  +   G    M     +     +
Sbjct: 236 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A       +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 291 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +   +    
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|307944898|ref|ZP_07660235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
 gi|307771822|gb|EFO31046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseibium sp. TrichSKD4]
          Length = 476

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 201/471 (42%), Positives = 277/471 (58%), Gaps = 3/471 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  D +    G   G + Q  + GISIDSR+I   EAFFAIKG  +DGHDF+  
Sbjct: 1   MNAPLWTRDDFIAGANGTPKGELGQ-DITGISIDSRTIEVGEAFFAIKGDRFDGHDFVGT 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA + VV+ D + S+ S       VDD L A+ +LAVA+R RS A I+A+TGSVGK
Sbjct: 60  ALANGASVAVVSADKLDSLPSTG-RYLIVDDPLAAMERLAVASRARSNARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L +AL    K +A + S+NNH GVPLTLARMP DVDFG+FE+GMS  GEI  L 
Sbjct: 119 TGTKEALRLALGRSGKVHASVASFNNHWGVPLTLARMPADVDFGVFEIGMSAPGEITPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A ITT+   HL  F  +E IA AKAEIF+GLE  G   LN D++ F+LL   +
Sbjct: 179 RMVRPHVAFITTVQAVHLEFFDSVEHIAQAKAEIFKGLEPGGVAILNRDNNQFDLLMFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  ++ I +FG+++NAD      ++ +  S +  ++ G+ +       G H   N L  
Sbjct: 239 KADHVQEIRTFGENQNADSFTEDVRRKAGSSAVSARILGEQLSYTLGAGGRHHVHNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L  ++  A +AL+     +GRG+     L +G   L+DESYNANPASM+AA+SV
Sbjct: 299 LTAVVELGGNLALAGEALADMRAPKGRGEVTVLQLPEGTAELLDESYNANPASMRAALSV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +      GRRIAVLGDM E+GE     H +L++ ++   +  ++  G  +  L D +P
Sbjct: 359 LGEAEITPPGRRIAVLGDMRELGEDGPKLHAELSDPVNEAGVEALFCVGPQMKQLWDRVP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + + V Y+E    L   +   +  GDVV+VK S       L+  L  ++P 
Sbjct: 419 QGLRVMYAEQAADLQDHLLQEIRSGDVVMVKGSLGTRMGPLVEALKTDYPP 469


>gi|221308279|ref|ZP_03590126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221312601|ref|ZP_03594406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221317525|ref|ZP_03598819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221321801|ref|ZP_03603095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. subtilis str. SMY]
          Length = 481

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 213/465 (45%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 29  TVKNIAEMVKGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 88

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +       +  V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 89  VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +           
Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D+QL+   Q  E +   ++    +  +   G    M     +     +
Sbjct: 260 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A       +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 315 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +   +    
Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 432

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|328552136|gb|AEB22628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328910408|gb|AEB62004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 456

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 212/466 (45%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G     V  Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL KLA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDR--SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+               
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLRE------KAYT 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+  + D +L++ KQ  E ++                I      N++  +G  +
Sbjct: 237 CRTTTYGEGADNDLRLKEIKQAEEGTYF-----TIDGIDRSFFIPVLGRHNVMNAMGAYA 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R      +   ++++++YNA+P SMKAAI ++  + 
Sbjct: 292 AGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            + +     VLGDM E+G+  ++FH +    ++   I HV+  G     + D   +    
Sbjct: 352 GYRKKM--LVLGDMLELGDEEKAFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   I+ +   GD+++ K+S        +  LLE+
Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|321314131|ref|YP_004206418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
 gi|320020405|gb|ADV95391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis BSn5]
          Length = 457

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 5   TVKNIAEMVEGTLANPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHSFVEQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +       +  V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +           
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D+QL+   Q  E +   ++   K+  +   G    M     +     +
Sbjct: 236 CQTKTYGTGTHNDYQLQDVSQSEEGTHFTIKGIEKTFFIPILGKHNVMNAMAAI-----A 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A       +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 291 AGAYFGIAPEDAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +   +    
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|294497055|ref|YP_003560755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
 gi|294346992|gb|ADE67321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium QM B1551]
          Length = 460

 Score =  279 bits (713), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 214/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L   I G           + G+SID+R+I     +  IKG  ++GH F+  A++ G
Sbjct: 5   TLKQLATMIPGSVFHSGNEAAVIEGVSIDTRTIQQGNLYIPIKGERFNGHTFVHKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + N D         I V  VDD L AL +LA + R      ++ ITGS GKTT K+
Sbjct: 65  AVATLWNKD--EENPPTDISVILVDDTLVALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G++NNHIG+PLT+ R+    D  + E+GMS  GEI FL++L  P
Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL +    + IA AK EI  GL  TG +  N D+     L        +
Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP----LLTSRVVNPV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG S+  D            +   V  +  +       +G H   N L  + +  
Sbjct: 239 FETMTFGSSEQNDLYPSAISAEELGTTFTVSRE-TTYSFFIPVLGKHNVHNALSAIAVGH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D +T  K L      +    R          T I+++YNA+P S+KAAI+++  + 
Sbjct: 298 YFGLDNETIAKGLKE---LKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL- 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G  ++I VLGDM E+G+  + FH ++ E +    I +V   G   + ++     +   
Sbjct: 354 -EGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             V + E  D L   + +     DVV+VK+S       +I+ ++ + P
Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|157691221|ref|YP_001485683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
 gi|157679979|gb|ABV61123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           pumilus SAFR-032]
          Length = 454

 Score =  279 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 219/463 (47%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q   G        +  ++G++ D+R ++    F  + G H++GH F   AV+ G
Sbjct: 5   TVKQIAQMAGGTLSNQAFGEEQIHGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ N     +     +PV  VDD L AL +LA +        ++ ITGS GKTTTK+
Sbjct: 65  AAAVLWNQK--ETNPPEGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP   +  + E+GMS  GEI FL++L  P
Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILSMPKGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI +GL++ GT +   D+     L  +      
Sbjct: 183 DAAVITNIGESHMQDLGSREAIADAKCEITKGLKEDGTFYYLGDEP----LIRERATQLS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG++ + D ++    Q +E +    Q++G +   +   +G H  +N L  + I  
Sbjct: 239 QQVKTFGEADDCDIKVTHINQLAEGTE--FQVEGYAQGFLIPVLGKHNVKNALAAIAIGQ 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +     + L        R + ++        T+I+++YNA+P SMKAAI ++  + 
Sbjct: 297 HFGLNERQIAQGLMQTKLTGMRLELFKTEKG---ITVINDAYNASPTSMKAAIDLVGDMD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
                  I VLGDM EMG   +++H +L   +    I HV   G     + +   +S   
Sbjct: 354 GFANR--ILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V      + L   +       DVV+VK+S       +I  L
Sbjct: 412 TRVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454


>gi|253576127|ref|ZP_04853459.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844470|gb|EES72486.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 466

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 16/466 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++     G           V G+  DSR I     F  + G  +DGHDF    +Q G
Sbjct: 5   NLAEIAAMCGGQIREAGDAGIVVQGVVTDSRQITKGCLFVPLAGERFDGHDFASDCLQAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG  +       S G+   P   VDD L AL  LA +    + A ++ ITGS GKTTTK+
Sbjct: 65  AGACLW----ALSKGTPPGPAVLVDDTLIALQALAKSYLTETGAKVVGITGSNGKTTTKD 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS+  K +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ +  P
Sbjct: 121 LVYALLSTTYKVHKTKGNFNNHIGLPLTILAMPEDTEIAVLEMGMSGRGEIELLSKIGEP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T I  +HL      EEIA AK EI  G++  G    N D+     + A+   +  
Sbjct: 181 ETAVVTNIGESHLLQLGSREEIARAKLEILAGMKPGGLFIYNGDEPLIPKVLAEPSTVKP 240

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +     +FG     D         ++   +      +   +    +G H   N L  + +
Sbjct: 241 EGLQTATFGLRPENDQYPTG-ILFTDHQTLFTPHGSEGDPLELPLLGEHNVSNALAAITV 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                       +  S     E  G R      +   T+++++YNA+P SMKAA+ VL  
Sbjct: 300 ARHYGVGEAAIREGFSK---VELTGMRIEVITGRSGITILNDAYNASPTSMKAALGVLEH 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  + +   IAVLGDM E+G+    +H ++ E+L+   +  ++  G     + +   + +
Sbjct: 357 MKGYRKK--IAVLGDMLELGDSEADYHREIGEMLTPGTVDQLFTCGPLSRHIAEGAKKQL 414

Query: 423 H---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +H       L   + S L   DVV+VK+S       ++  + 
Sbjct: 415 DPNFIHAYTDKSELIRKLVSLLHPQDVVLVKASRGMKLEEVVEAIK 460


>gi|229055076|ref|ZP_04195507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
 gi|228721260|gb|EEL72785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH603]
          Length = 458

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 216/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        S  +      + ++       +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQSTGT-HFKMNRDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLG 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|229028083|ref|ZP_04184234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228733236|gb|EEL84067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 458

 Score =  279 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 219/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPT 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELAKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|300690337|ref|YP_003751332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
 gi|299077397|emb|CBJ50022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum PSI07]
          Length = 482

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 194/471 (41%), Gaps = 16/471 (3%)

Query: 4   LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + +  D    +   H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V 
Sbjct: 8   MMSATDAAAWMAGAHLVG--PDAAIRRVTTDSRTVQPGDLFVALIGERFDAHDFLPDVVA 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  V+V+  +  ++    + V  V D   AL +LA   R +    ++A+TGS GKTT 
Sbjct: 66  RGAAAVLVSRPLAGALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           KEM++   +      A     G+ NN IG+PLTL R+       + ELGM+H GE   L 
Sbjct: 126 KEMISAVFARAVGEEARLATAGNLNNDIGLPLTLFRLHAQHRLAVLELGMNHPGETEVLA 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P +A+I      H      +E +A   A +   L   G      D +         
Sbjct: 186 TIAQPTVALINNAQREHQEFMVSVEAVAIEHAAVLAALPADGVAVFPRDAANGGEYAPLW 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A                         ++   ++V             +G H A+N L  
Sbjct: 246 RAAAGTRRV-LDFGIEGGAVSATVTDTADGQHIDVHAPDLRFSFTLPLLGVHNARNALAA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      +   +ALS F P +GR    +         ++D++YNANP S++AAI  
Sbjct: 305 TACSLAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDA 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + DA  
Sbjct: 362 LATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARERGIDAVLATGELARHMVDAFG 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 418 SGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|228970415|ref|ZP_04131070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228789301|gb|EEM37225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|326938017|gb|AEA13913.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 458

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I +      +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G     FH ++ +++    ISHV+  G     + +   
Sbjct: 352 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|229009736|ref|ZP_04166959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
 gi|228751531|gb|EEM01334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides DSM 2048]
          Length = 458

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 216/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + ++       +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETSSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|228950767|ref|ZP_04112896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228808907|gb|EEM55397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar kurstaki str. T03a001]
          Length = 458

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +   
Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|158426166|ref|YP_001527458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Azorhizobium caulinodans ORS 571]
 gi|158333055|dbj|BAF90540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azorhizobium
           caulinodans ORS 571]
          Length = 476

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 209/470 (44%), Positives = 275/470 (58%), Gaps = 6/470 (1%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    L+T  ++L A  G + G +    V GISID+R++ P +AFFAI G + DGH ++ 
Sbjct: 1   MTTRALYTPEEILAATGGTARGTLAD--VTGISIDTRTLEPGDAFFAITGENSDGHAYVA 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA L VV  D V  +     P+  V DVLGAL  L  AAR RS+A I+A+TGSVG
Sbjct: 59  KALENGASLAVVAADRVQGLP--DGPLVVVPDVLGALTDLGKAARARSEARIVAVTGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE L IALS+  +T+A   SYNNH GVPL+LAR P    +G+FE+GM+H GEI  L
Sbjct: 117 KTTTKEALRIALSADGETHASAASYNNHWGVPLSLARFPRSARYGVFEVGMNHPGEITPL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +VRPH+AVITT+   H++ FSGIEEIA AKAEIF+GLE  GT  LN D+  F+ L A 
Sbjct: 177 VRMVRPHVAVITTVEAVHIAQFSGIEEIADAKAEIFDGLEPGGTAVLNRDNPLFDRLVAS 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A G+K I SFG     + +L+        S +   + G  +       G H+ QN L 
Sbjct: 237 ARAKGVKNIVSFGADPACEVRLKDVVLHPACSTVVADVLGTPVTFKLGMPGRHIVQNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V +L  D+  A  AL+   P  GRG     +++ G  TL+DESYNANPASM+AAI 
Sbjct: 297 VLAAVRLLGGDLALAAVALARLRPPPGRGVPVSLSVSGGTATLLDESYNANPASMRAAID 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS+      GRRIAVLGDM E+G      H +LAE L    I  V+ +G  + AL + L
Sbjct: 357 VLSRTPVGPRGRRIAVLGDMLELGTEGAQHHRELAEALEAGKIDRVFCAGPLMHALWEVL 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P S    Y+     L   I +++  GD ++VK SN      L+  L E F
Sbjct: 417 PSSRKGGYAVHASHLEPLISAAIRAGDTLMVKGSNGSRMGPLVKALAERF 466


>gi|308172325|ref|YP_003919030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307605189|emb|CBI41560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 456

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G     V  Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPVFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL KLA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDR--SEPNPPKERAVILVDDTLEALQKLAKAYLEELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+               
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLRE------KAYT 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+  + D +L++ KQ  E ++                I      N++  +G  +
Sbjct: 237 CRTTTYGEGADNDLRLKEIKQGEEGTYF-----TIDSIDRSFFIPVLGRHNVMNAMGAYA 291

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R      +   ++++++YNA+P SMKAAI ++  + 
Sbjct: 292 AGIYFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAIELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            + +     VLGDM E+G+  + FH +    ++   I HV+  G     + D   +    
Sbjct: 352 GYRKKM--LVLGDMLELGDEEKVFHEECGAAINPAEIDHVFTYGTLGAFIADGARKHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   I+ +   GD+++ K+S        +  LLE+
Sbjct: 410 GRVSHYLDKKELLEAIRENAASGDLLLFKASRGMKLEETVKDLLEK 455


>gi|295093770|emb|CBK82861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Coprococcus sp. ART55/1]
          Length = 455

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/465 (28%), Positives = 223/465 (47%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A+ + A
Sbjct: 5   TVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGTRTDGHRFIESAL-QTA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +     ++         VDD + AL  +    R R    ++A+TGSVGKTTT+EM
Sbjct: 64  AATLTSEH--DNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKTTTREM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT + +P 
Sbjct: 122 ITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDVAVLELGIGEPGEMDILTDIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VITTI  AH+     +E     K  I +G+ + GT+++N DD     +K +       
Sbjct: 182 ICVITTIGVAHIEYMGSLENTRKEKLNIIKGMGENGTLYINGDDPMLYAVKDEI----PC 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +Y++G  +  DF+    +     S  ++      + V    +G H  +N L+ + +   
Sbjct: 238 KVYTYGCGEGMDFRATNIRMEDGYSVYDMVHGDDVVTVKVGVMGLHNVRNSLVAMAVSHQ 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    + + KA   F          +     G +T+ID++YNA+P SMKA+  VL  +  
Sbjct: 298 LGVPYEKSSKAFENFRGLRQ-----KVIKLPGKYTIIDDTYNASPDSMKASTDVLCDM-- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RS 421
             EG++  VLGDM E+GE S  +H ++ E L    I  V + G H   +K+AL     + 
Sbjct: 351 KCEGKKYIVLGDMLELGEKSDEYHYEVGEYLRDKKIDEVIVIGEHAQKIKEALDACDTKY 410

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                    + + +++ + +   D+V++K SN      ++N+L  
Sbjct: 411 AKTVSFTDTEEIAIYLMALMKPEDIVLLKGSNGMKLSEVVNILTN 455


>gi|154684960|ref|YP_001420121.1| hypothetical protein RBAM_004910 [Bacillus amyloliquefaciens FZB42]
 gi|154350811|gb|ABS72890.1| MurF [Bacillus amyloliquefaciens FZB42]
          Length = 456

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 210/466 (45%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   ++G        Q  + G + D+R++   + F  +KG H++GH F+  A +KG
Sbjct: 5   TVKRIADMVKGTLTNPEFEQTMIEGAATDTRTLEKNQLFIPLKGEHFNGHTFVPQAFEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +             V  VDD L AL  LA A        +I +TGS GKTTTK+
Sbjct: 65  VSAVLWDR--SEPNPPEGRAVILVDDTLEALQTLAKAYLKELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI FL+ L  P
Sbjct: 123 MLHAVLGTQYRVHKTAGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSARGEIDFLSRLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL + G +F   D+               
Sbjct: 183 EAAVITNIGESHMQDLGSREGIAEAKLEIINGLREDGVLFYFGDEPLLR------QKTYT 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D +L++ KQ  E ++  +    +S  +   G    M        GI  
Sbjct: 237 CRTTTYGAGADNDLRLKEIKQAEEGTYFNIDGIDRSFFIPVLGRHNVMNAMAAYAAGI-- 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R      +   ++++++YNA+P SMKAA+ ++  + 
Sbjct: 295 ---YFGITPENAALGLSRLKVTGMRLELVKTENGISIVNDAYNASPTSMKAAVELIETMK 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            + +     VLGDM E+G+  ++FH +    ++   I HV+  G     + D   R    
Sbjct: 352 GYRKKM--LVLGDMLELGDEEKAFHEECGAAVNPAEIDHVFTYGTLGAFIADGARRHFEE 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +      L   IQ     GD+++ K+S       ++  LLE+
Sbjct: 410 GRVSHYLDKKELLHAIQEMAASGDLLLFKASRGMKLEEIVKDLLEK 455


>gi|229176826|ref|ZP_04304228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
 gi|228606718|gb|EEK64137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 172560W]
          Length = 458

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +   
Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|294792044|ref|ZP_06757192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
 gi|294457274|gb|EFG25636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 6_1_27]
          Length = 466

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S           +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVLEATKGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 77  ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 133 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +      L  
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DRLAK 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 249 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 309 VLGIKSNTIRKGLSEFSGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 364

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   IA+LGDM E+G+ S+  H ++  +L+    S V+  G     +     ++   
Sbjct: 365 GKRK---IAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 422 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465


>gi|229131240|ref|ZP_04260146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228652231|gb|EEL08162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 458

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVDAKDVVLVKASRGMKLEEVITMLK 458


>gi|229165217|ref|ZP_04293009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
 gi|228618249|gb|EEK75282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH621]
          Length = 458

 Score =  278 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|308185655|ref|YP_003929786.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
 gi|308056165|gb|ADO08337.1| D-alanine:D-alanine-adding enzyme [Pantoea vagans C9-1]
          Length = 452

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 208/469 (44%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F A+ G  +D HDF   A
Sbjct: 1   MIPV-SLKTLAEITGGTLHG--SDFTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +      +++P   V+D   A  +L    R +S A ++A+TGS GKT
Sbjct: 58  IANGAQALLVSKHL-----PVAVPQVVVEDTRIAFGRLGAWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   G   LN + + +   +    
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPAHGIAILNDESNDWLNWQNTLQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +       ++   DF  R  +   + +   +     + E+V    G H   N L   
Sbjct: 233 DKTVWR--FSPQAGECDFSARDIRIAQDGTHFVMNTPRGTAEIVLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L       GR    R +       L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSA---HQLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G ++ V GDM E+GE ++  H ++ E      +  V   G     + +    
Sbjct: 348 SEMP----GYQVLVAGDMAELGEETEKCHREIGEAAREAGLDRVLTCGKFSHFISE---N 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   ++  L       V++K S S    +++  L E+
Sbjct: 401 SGVGEHFSDKTALTERLRELLSQHSEITVLIKGSRSAAMEQVVQSLKEK 449


>gi|228937528|ref|ZP_04100170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228976985|ref|ZP_04137393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228782732|gb|EEM30902.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228822139|gb|EEM68125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 454

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +     
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG ++  D+        +  +      + +++      +G H   N L ++ I + 
Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIATH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +   I VLGDM E+G     FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 FTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454


>gi|229188505|ref|ZP_04315549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
 gi|228594968|gb|EEK52743.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus ATCC 10876]
          Length = 454

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLEEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +     
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG ++  D+        +  +      + +++      +G H   N L ++ I   
Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAKH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 FAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454


>gi|291482866|dbj|BAI83941.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 481

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 214/465 (46%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG  +DGH F+  A + G
Sbjct: 29  TVKNIAEMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGERFDGHTFVEQAFEAG 88

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +  +       +  V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 89  VAAVLWDRSV--PNPPENHAVILVDDTLTALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 146

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP + +  + E+GMS  GEI  L+ L  P
Sbjct: 147 MIHAVLGTQYRVHKTGGNFNNHIGLPLTVLAMPENTEIAVLEMGMSAKGEIDLLSRLANP 206

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +           
Sbjct: 207 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------NAYS 259

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   + D+QL+   Q  E +   ++    +  +   G    M     +     +
Sbjct: 260 CQTKTYGTGAHNDYQLQDVSQSEEGTHFTIKGIENTFFIPILGKHNVMNAMAAI-----A 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 315 AGAYFGITPEGAAKGLSGLKVTGMRLELIKTDSGLSIINDAYNASPTSMKAAIQLTESL- 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +   +    
Sbjct: 374 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPDKIDRVFTYGKLGAFIAEGALKQFEK 432

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 433 DRVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 477


>gi|304396559|ref|ZP_07378440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
 gi|304356068|gb|EFM20434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           aB]
          Length = 452

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 210/469 (44%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F A+ G  +D HDF   A
Sbjct: 1   MIPV-SLKTLAEITGGTLHG--SDLTLNDVTTDTRKVTAGSLFVALVGERFDAHDFAEEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +      +S+P   V+D   A  +L+   R +S A ++A+TGS GKT
Sbjct: 58  IDSGAQALLVSKHL-----PVSVPQVVVEDTRLAFGRLSAWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDYGVPMTLLRLTAEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   G   LN + + +   +    
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPANGIAILNEESNDWPNWQTTLQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +       ++   DF  R  +   + +   ++      E+V    G H   N L   
Sbjct: 233 DKTVWR--FSPQAAACDFSARDIRIAQDGTHFVMKTPRGEAEIVLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L       GR    R +       L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALALSVDAPLSAVQQGLKNLQSVPGRLFPVRLSA---HQLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V GDM E+G+ ++  H ++ +      I  V   G     + +    
Sbjct: 348 SEMP----GYRVLVAGDMAELGDETEKCHREIGDAARDAGIDRVLSCGKFSHFISE---N 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 401 SKAGEHFSDKTALTERLRQLLSEHSEITVLIKGSRSAAMEQVVQSLKEK 449


>gi|229143031|ref|ZP_04271469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
 gi|228640439|gb|EEK96831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST24]
          Length = 468

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 217/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 11  MIKRM-LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 70  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 128 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+          
Sbjct: 188 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVP 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 246 GMNLAAETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 305 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +   
Sbjct: 362 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 419

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 420 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 468


>gi|269798177|ref|YP_003312077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
 gi|269094806|gb|ACZ24797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Veillonella parvula
           DSM 2008]
          Length = 452

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 206/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S           IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTD-NIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +     +L  
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-H 423
              +   IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 351 GKRK---IAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++   +          GDV++VK S      R++  L + 
Sbjct: 408 AFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|148379430|ref|YP_001253971.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153930871|ref|YP_001383809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937074|ref|YP_001387359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
 gi|148288914|emb|CAL83001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152926915|gb|ABS32415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932988|gb|ABS38487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A str. Hall]
          Length = 462

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 210/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +      S S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  + +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIKFDILERGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKR---TIALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +       +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|163938236|ref|YP_001643120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860433|gb|ABY41492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 458

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAERYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AIATLWMKDV--ENPPENLPVIFVEDTLAALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL+K G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQKGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNRDETLSFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G     FH ++ +++    IS+V+  G     + +        
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPK 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   ++ + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 DRVKAYDSKEELIKELQAVVGTKDVVLVKASRGMKLEEVITMLK 458


>gi|307635132|gb|ADI85824.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           sulfurreducens KN400]
          Length = 470

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 143/472 (30%), Positives = 211/472 (44%), Gaps = 16/472 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T  D+L A  G  +        +G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFTLDDILGATGGEIVAGGETIGASGVSTDSRTVEPGELFIPLRGERFDGHDYLDAARAR 61

Query: 64  GAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  L +V    +A       +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVRLTLVERQWLAGRQLPADVTCIVVDDTLRALGDLAACHRRRFDIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+   +     G+ NN IGVP  L R+     + + E+GMS  GEI  L  +V
Sbjct: 122 KEMLAAILARTGEGLKTEGNLNNLIGVPRMLFRLSGVHRWAVLEIGMSEFGEIDRLAEIV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  LE   +   N DD     L A+  + 
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLEPGSSAVYNADDP----LIARCPSP 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG                +     ++L    + V  H  G H   N L     
Sbjct: 238 EGVKRVSFGLRGGDVTAEDVENLGKKGQRFTLRLPNGRVTVTLHAFGSHNVANALAAAAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L    +   + L  F P      R       G   LID+SYNANPASM AA++ L +
Sbjct: 298 ARVLGVAPEEIARGLGEFMP----YARRFNLEEVGDVVLIDDSYNANPASMAAALTTLRE 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I   G GR +AVLGDM E+G  ++  H  L  + +   +  +++ G     +        
Sbjct: 354 I--KGSGRAVAVLGDMLELGIGAEEAHRQLGRLAATC-VDRLYVLGAMAGTVAAGALEGG 410

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               HV  +     +   ++ +   G++++VK S      R+   + E F A
Sbjct: 411 LEERHVTIAADHGEIVADLRRTAATGEMILVKGSRGMAMDRVAEGIREAFAA 462


>gi|282850406|ref|ZP_06259785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
 gi|282579899|gb|EFB85303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella parvula ATCC 17745]
          Length = 452

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +L+A +G S           +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVLEATKGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINAAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRSVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +      L  
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DRLAK 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFSGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   IA+LGDM E+G+ S+  H ++  +L+    S V+  G     +     ++   
Sbjct: 351 GKRK---IAMLGDMLELGDFSEEAHREIGHLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|206972298|ref|ZP_03233245.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|229067990|ref|ZP_04201303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
 gi|229077587|ref|ZP_04210229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|206732872|gb|EDZ50047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH1134]
 gi|228705726|gb|EEL58070.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock4-2]
 gi|228715128|gb|EEL66991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus F65185]
          Length = 458

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 218/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +    +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEETTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLATETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +   
Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|218235051|ref|YP_002365073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228956669|ref|ZP_04118460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|229041131|ref|ZP_04189891.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|229107907|ref|ZP_04237539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|229125741|ref|ZP_04254770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|229148634|ref|ZP_04276888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|296501058|ref|YP_003662758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
 gi|218163008|gb|ACK63000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus B4264]
 gi|228634892|gb|EEK91467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1550]
 gi|228657714|gb|EEL13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-Cer4]
 gi|228675550|gb|EEL30762.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock1-15]
 gi|228727213|gb|EEL78410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH676]
 gi|228803007|gb|EEM49834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|296322110|gb|ADH05038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis BMB171]
          Length = 458

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 217/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+          
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVP 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 236 GMNLAAETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +   
Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|319404514|emb|CBI78119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           rochalimae ATCC BAA-1498]
          Length = 472

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 201/472 (42%), Positives = 284/472 (60%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+   +G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEI-FSGVSIDSRTLVAGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKARIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EE+A AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEVADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++       S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVHLLENCSCMVVHFDQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L+ G    + + SYNANP SM+ A+ +
Sbjct: 300 AACDTVCADLAHVTLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMRTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMGVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +   + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIVPLVFSEISNGDLIMIKSSHHIYLSNIVAEILNRYKVI 471


>gi|307332566|ref|ZP_07611616.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881787|gb|EFN12923.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 479

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 197/474 (41%), Gaps = 13/474 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    I  P   V G + IDSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-SLTEIAGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGERVDGHDFAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA  V+    +        +P   V DV+ A+  LA A   R  AT++A+TGS G
Sbjct: 60  KAIEAGATAVLAARPVG--TADAPVPAIVVPDVIAAMGALARAVVERLDATVVALTGSAG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT           + E+G    G IR+L
Sbjct: 118 KTSTKDLIAQLLQRRGPTVWTPGSLNNEIGLPLTAMSADEATLHLVLEMGARGKGHIRYL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 178 ATLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPPAEEG-GVAVLNADDPLVRA 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +        FG++++AD +    +  ++       L   +         Y        
Sbjct: 237 MMSRTKARTVLFGEAEDADVRAGNVRL-ADGGRPAFTLHTPTGCSEVTMRLYGEHHVSNA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A+++    +    R          T+++++YNANP SM+AA+ 
Sbjct: 296 LAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVNDAYNANPESMRAALR 355

Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
            L  +     GRR  AVLG M E+GE S + H  +  +    N+S +    G     L  
Sbjct: 356 ALVAMGAATPGRRTWAVLGQMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWLDM 415

Query: 417 ALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                        +   +      ++S L  GDVV+VK+S S G  RL   LL+
Sbjct: 416 GAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLERLAQALLD 469


>gi|30018495|ref|NP_830126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
 gi|29894035|gb|AAP07327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           cereus ATCC 14579]
          Length = 454

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 216/463 (46%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTELAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+                
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTN--RVPGMNLAA 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG ++  D+        +  +      + +++      +G H   N L ++ I   
Sbjct: 238 ETVTFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAKH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +   I VLGDM E+G+    FH ++ +++    ISHV+  G     + +       + 
Sbjct: 354 FAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 454


>gi|218895358|ref|YP_002443769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228906017|ref|ZP_04069909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
 gi|228963330|ref|ZP_04124495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|218542353|gb|ACK94747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus G9842]
 gi|228796358|gb|EEM43801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228853620|gb|EEM98385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 200]
          Length = 458

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I +      +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G     FH ++ +++    I+HV+  G     + +   
Sbjct: 352 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 458


>gi|75760677|ref|ZP_00740703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74491827|gb|EAO55017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 468

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 11  MIKRM-LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDK 69

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 70  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 128 TSTKDIVTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 187

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 188 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 247

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 248 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I +      +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 305 MAIATHFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHL 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G     FH ++ +++    I+HV+  G     + +   
Sbjct: 362 MNGLDGFTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAK 419

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 420 INFPNERVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 468


>gi|229015637|ref|ZP_04172627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
 gi|229021829|ref|ZP_04178405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228739469|gb|EEL89889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1272]
 gi|228745657|gb|EEL95669.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1273]
          Length = 458

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 216/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAKQYEGITIKGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKGV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +    
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      +    E +   I      N+  TL  ++
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT----HFKMNREENISFYIPVLGKHNVYNTLASMA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I      T  +        +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 297 IAKHFGVTWEEMKKGLVTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEIITMLK 458


>gi|228919171|ref|ZP_04082545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228840482|gb|EEM85749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 458

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 219/469 (46%), Gaps = 15/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M        + Q + G           + G+SID+R I     +  I+G  +DGH F+  
Sbjct: 1   MIKRM-LKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIKKGNLYVPIQGERFDGHGFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV+ GA   +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GK
Sbjct: 60  AVENGAVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+
Sbjct: 118 TSTKDIVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLS 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP+ A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + 
Sbjct: 178 KLARPNAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEM 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG ++  D+        +  +      + +++      +G H   N L +
Sbjct: 238 NLAAETV--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLAS 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        +   + L      +  G R          T+I+++YNA+P +M+AA  +
Sbjct: 295 MAIAKHFGVTWEEMKEGL---VTLQMTGMRMEIVKTNSGLTIINDAYNASPTAMEAAFHL 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +    +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +   
Sbjct: 352 MNGLDGFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAK 409

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 410 INFPNERVKAYDNKEELVKDLQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|228898975|ref|ZP_04063253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
 gi|228860668|gb|EEN05050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis IBL 4222]
          Length = 454

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/463 (26%), Positives = 218/463 (47%), Gaps = 14/463 (3%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ GA
Sbjct: 2   LKQVEQMVNGTGLAEQYEGTIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+  +    ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK++
Sbjct: 62  VATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVVGVTGSNGKTSTKDI 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP+
Sbjct: 120 VTSILATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARPN 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + +     
Sbjct: 180 AAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLAAET 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG ++  D+        +  +      + +++      +G H   N L ++ I + 
Sbjct: 240 V--TFGDARANDYYPTTVTLQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIATH 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 297 FGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDG 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +   I VLGDM E+G     FH ++ +++    I+HV+  G     + +       + 
Sbjct: 354 FTKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAHVFTYGRLGAQIAEGAKINFPNE 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 412 RVKAYDNKEELVRDLQAVVDAKDVVLIKASRGMKLEEVITMLK 454


>gi|170738609|ref|YP_001767264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
 gi|168192883|gb|ACA14830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium sp. 4-46]
          Length = 485

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 191/474 (40%), Positives = 268/474 (56%), Gaps = 7/474 (1%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  PLWT   +L A  G ++   P   ++G+SID+R++   + FFAI+G   DGHDF+  
Sbjct: 1   MTEPLWTLDAVLAATGGRALDGAPDAPLSGLSIDTRTLKVGDLFFAIRGEQRDGHDFVRD 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAIT 114
           A+ +GAG  VV+    A +     P+  V     D VL A+ KLA AAR RS+A I+A+T
Sbjct: 61  ALARGAGAAVVSQARAADLAGAG-PLVAVPEAGEDPVLAAMRKLAAAARARSRARIVAVT 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKT TKE L   L++   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H GE
Sbjct: 120 GSVGKTGTKEALRHVLAAQGATHASVASYNNHWGVPLTLGRMPAASAFGVFEIGMNHAGE 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT LVRP +AV+TT+ P H+ +F  +  IA AK EIF GLE  G   +N D+  FE 
Sbjct: 180 IAPLTRLVRPEVAVVTTVEPVHIEHFRALSGIADAKGEIFCGLEPGGVAVINRDNPHFER 239

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  + A     I SFG+   AD +  +     + S ++ ++ G  +       G H A 
Sbjct: 240 LRDHALASRAGRIVSFGEHPRADVRAERVVMRPDLSIVDARVMGIPVTYQLGTPGRHTAL 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +  V  L AD+  A  +L+   P  GRG+R    L  G   L+DESYNANPAS++
Sbjct: 300 NSLAVMAAVHALGADLALAALSLAQLRPPVGRGERTLLRLRDGEALLVDESYNANPASVR 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA++ L+ I   G  RRIAVLGDM E+G  +   H DLA  ++ + I  V+++G  +  L
Sbjct: 360 AALATLAGIEVQGRARRIAVLGDMLELGAEAARLHRDLAAAVAEHGIDLVFVAGPLMAEL 419

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +ALP       + +   L   + + +  GD V+VK SNS    R++  L   +
Sbjct: 420 FEALPAGTRGVAAASSADLLDAVVAEIRPGDAVMVKGSNSTRMGRIVEALKARY 473


>gi|227822655|ref|YP_002826627.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
 gi|227341656|gb|ACP25874.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Sinorhizobium fredii NGR234]
          Length = 477

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 225/469 (47%), Positives = 311/469 (66%), Gaps = 1/469 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  DLL A+ G  +G +P+G + GISIDSR+IA  EAFFAI+G   DGHD+   A
Sbjct: 1   MNWLWTCSDLLAAMNGRPVGNLPEGII-GISIDSRTIAKGEAFFAIRGDRVDGHDYAGIA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L  P+  VDDVL A+ +L  AAR RS A +IA+TGSVGKT
Sbjct: 60  LANGASLLVVSEGKLPALGRLIAPMIVVDDVLEAMIRLGCAARDRSAAKVIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS + + +A I S+NNH GVPLTLARMP   +FGIFE+GM+H GEIR LT 
Sbjct: 120 TTKEMLRHVLSPLGRVHASIASFNNHWGVPLTLARMPETTEFGIFEIGMNHHGEIRPLTA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRPH+AV+T+IA AHL NF+ ++EIA+AKAEIFEG+ K G   +N D   FELL+  + 
Sbjct: 180 MVRPHVAVVTSIAAAHLGNFASLDEIATAKAEIFEGVVKGGHAVINRDSPQFELLERAAV 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G+  I+SFG +  ++++L ++   +E S +   + G++ EV     G H+A+N L  +
Sbjct: 240 AAGVSHIHSFGANPKSEYRLIEFAGGAESSGLWAGIGGRTREVTIGAPGRHIAENALAVV 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +  AD+D  + +L+   P++GRG R+R  +  G  TLIDESYNANPASM+AAIS+L
Sbjct: 300 AAAQLAGADLDRVLASLATMQPEKGRGLRHRLKIGGGHLTLIDESYNANPASMRAAISLL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   GRRIA+LGDM EMGE + + H  LAE +    I+ VWL+G  +  L+DALP 
Sbjct: 360 RAAEPPAGGRRIAILGDMLEMGEHAAAVHAALAEPIVEAGITDVWLAGPDIAHLRDALPG 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            + V + E +  L  +   ++  GDVV+VKSS   G  +++  LL+ +P
Sbjct: 420 EVSVVHREAVGDLTSYALGAVAAGDVVMVKSSKGTGCAKIVQALLDAYP 468


>gi|291616268|ref|YP_003519010.1| MurF [Pantoea ananatis LMG 20103]
 gi|291151298|gb|ADD75882.1| MurF [Pantoea ananatis LMG 20103]
          Length = 452

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 212/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F AI G  +D HDF   A
Sbjct: 1   MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  ++V+  +      +S+P   V D   A  KLA   R ++ A ++A+TGS GKT
Sbjct: 58  IAKGAKALLVSKHL-----PVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +E +A AK EIF GL   GT  LN D + +   +   H
Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G        ++ + DF     +   + +   ++      +++    G H   N L   
Sbjct: 233 --GKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMRTPRGEADIILPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L       GR    R +       ++D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVDAPLSAVQAGLKSLQSVPGRLFPVRLS---EHQLILDDSYNANVGSMVAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S+ FH ++        +  V  +G     L +    
Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSE---S 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 401 SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449


>gi|27468598|ref|NP_765235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867606|ref|YP_189254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|293366047|ref|ZP_06612735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27316145|gb|AAO05279.1|AE016749_225 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57638264|gb|AAW55052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis RP62A]
 gi|291319770|gb|EFE60128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329734183|gb|EGG70501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 451

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 139/461 (30%), Positives = 208/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + ++ +        +E     +  +      +          NM      ++I
Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                       +  H  +    R     +    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424
              GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+        
Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  D L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|303228371|ref|ZP_07315204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
 gi|303230720|ref|ZP_07317467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302514480|gb|EFL56475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-049-V-Sch6]
 gi|302516873|gb|EFL58782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella atypica ACS-134-V-Col7a]
          Length = 452

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 199/464 (42%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  +++ A  G             IS D+R+I     F A++G  +DGHDFI  A++KG
Sbjct: 4   FTLQEIIDATSGT-CKGDVSLQFKDISTDTRTIEAGYVFVALRGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R +  ++AITGS GKTTTKE
Sbjct: 63  ATAAIVEKGRSVD----GIICVEVENTLKAYQDLANFHRRRFQIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+         ++NN IG+P TL ++  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLSTEFNVLKTEKNFNNEIGLPKTLLQLSPEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT +  +H+      E IA AK E+   L       LN DD F + + +       
Sbjct: 179 TIGIITNVGTSHIELLGSQEAIAEAKGELIRCLGPDSVAILNEDDHFVKAMSSI----AE 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G   NA       +   +      +   +  +V    IG H   + L  +    
Sbjct: 235 GKTVTYGIHSNATVIGSHLRYKKDGIKFTCKCYDEVFDVFLPMIGEHNVYDALAAIAAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        K LS F          +  +      +++++YNANP+SM  +I  L Q+ 
Sbjct: 295 VLGVKSSKIKKGLSDFTGT----PMRQEIVAFEDIVILNDAYNANPSSMSESIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIH 423
              +   IA+LGDM E+G+ ++  H  +  +L+    S V+  G     +        + 
Sbjct: 351 GKRK---IAMLGDMLELGDFTEEGHRQVGRLLAEEGYSVVFTFGEAANFIAKEAKLAGLE 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           VH   +   +          GDV++VK S      R++  L E 
Sbjct: 408 VHRCNSHLEMANAYNDIREKGDVILVKGSRGLRMERVVEELKER 451


>gi|282876511|ref|ZP_06285377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|281294763|gb|EFA87291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis SK135]
 gi|329735704|gb|EGG71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU028]
          Length = 451

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 138/461 (29%), Positives = 207/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKYSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +  +      +          NM      ++I
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                       +  H  +    R     +    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSGMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424
              GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+        
Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|291541891|emb|CBL15001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus bromii L2-63]
          Length = 450

 Score =  277 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 209/467 (44%), Gaps = 23/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ +A  G  +G        +  +  DSR +     F AIKG   DGHDFI     
Sbjct: 4   FTLAEIAKACNGEYVGDESLKHTKITSVERDSRQVKNGSLFLAIKGERVDGHDFIEKCFA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +       +  + + P   V   L A+ K+  A R +    +I I+GSVGKT+T
Sbjct: 64  QGAVCALCEK----APENATKPCIVVPSTLDAVKKIGRAYREKFDIPVIGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS   KT+   G+ NN +GVPLTL  MP D +  + E+G+S  GE+  L+ +V
Sbjct: 120 KEMLYAVLSQKFKTHKTQGNLNNELGVPLTLLSMPEDTEAAVIEMGISDFGEMTRLSEMV 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V+T I   HL N    + +  AK E+F+   +     LN DD     +K     +
Sbjct: 180 QPTICVLTIIGECHLENLGDRDGVLKAKTEMFKNARENADFILNGDDDKLSTVK----TV 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             K    FG     DF  +  K   +      +     +++V    IG +M  N L    
Sbjct: 236 NGKKPVFFGLDAKNDFYAKNIKNSGDGKVLATLCFDNNNIDVEIPAIGTYMVTNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +L    +     ++ +     R       +N G   +ID+ YNANP S++A++  LS
Sbjct: 296 AGKLLGLTDEEIANGVASYKTVGSR----ANVINTGKIKIIDDCYNANPTSVRASLDTLS 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +    +GR++A+LGDM E+G      H D         I  V   G     L       
Sbjct: 352 NL----DGRKVAILGDMKELGSEELKLHFDTGVYAKSKGIGTVITVGELAKELAKGA--- 404

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 +T++     I  ++  GDVV+VK+S+S  F  ++  L + F
Sbjct: 405 -DGKAFDTIEDAKPEILKTIKSGDVVLVKASHSMQFENIVEFLKQNF 450


>gi|295702420|ref|YP_003595495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
 gi|294800079|gb|ADF37145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family
           protein [Bacillus megaterium DSM 319]
          Length = 460

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 213/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L   I G           + G+SID+R+I     +  IKG  ++GH F+  A++ G
Sbjct: 5   TLTQLATMIPGSVFHSGNEATVIEGVSIDTRTIQQGNLYIPIKGERFNGHAFVHKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + N D         I V  VDD L AL +LA + R      ++ ITGS GKTT K+
Sbjct: 65  ALATLWNKD--EENPPTDISVILVDDTLEALQQLAKSYRHELDIKVVGITGSNGKTTAKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  +     G++NNHIG+PLT+ R+    D  + E+GMS  GEI FL++L  P
Sbjct: 123 MVKAVLDTTYRVLKTDGNFNNHIGMPLTILRLDETHDIAVLEMGMSSRGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL +    + IA AK EI  GL  TG +  N D+     L        +
Sbjct: 183 DVAIITNIGESHLQDLGSRDGIAEAKLEITSGLAPTGQLVYNGDEP----LLTSRVVNPV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG S+  D            +   V  +          +G H   N L  + +  
Sbjct: 239 FETVTFGSSEQNDLYPSAISAEELGTTFTVSRETTYPFF-IPVLGKHNVHNALSAIAVGH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D +T  K L      +    R          T I+++YNA+P S+KAAI+++  + 
Sbjct: 298 YFGLDNETIAKGLKE---LKLTNMRMELVKRTDGLTFINDAYNASPTSVKAAITLMHDL- 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G  ++I VLGDM E+G+  + FH ++ E +    I +V   G   + ++     +   
Sbjct: 354 -EGYKQKILVLGDMLELGDQEKEFHKEVGEFIQAEKIDYVLTYGPLSVEIEQGAKNNFAE 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             V + E  D L   + +     DVV+VK+S       +I+ ++ + P
Sbjct: 413 DKVMHFEEKDELVKKLTAITTREDVVLVKASRGMKLEEVISKMMHKLP 460


>gi|83858918|ref|ZP_00952440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853741|gb|EAP91593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 467

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 182/472 (38%), Positives = 246/472 (52%), Gaps = 10/472 (2%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  PLWT  D  +A QG           +G+SID+R++ P + F A+     DGHDF   
Sbjct: 1   MTAPLWTARDAAEASQGRLTEGG--WAASGVSIDTRTLQPGDLFVALT-AQRDGHDFAQA 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ KGA  V+V+        + S P   V++VL  L +L   AR RS A  + +TGSVGK
Sbjct: 58  ALDKGAAAVLVSNP-----EACSGPRLVVENVLDGLIRLGEGARRRSDAVRVGVTGSVGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KE L          +    SYNNH GVPLTLARMP      +FE+GM+H GEI  LT
Sbjct: 113 TSVKEALAAVFIKAGPAHWSEKSYNNHWGVPLTLARMPEATRHAVFEMGMNHKGEISELT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A+IT IAPAHL N   +E IA AKAEIFEGLE  G   +  DD F   L    
Sbjct: 173 RMVRPHVAMITKIAPAHLENLGSMEAIADAKAEIFEGLEADGVAVIPADDEFAPRLMQAV 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G   +  FG +  A  ++  + +  +     + + GK M+      G H A N    
Sbjct: 233 QGSGAGFMLDFGLTPGAAVRILSYDEGPDGGVGRMDVMGKPMDFRLRLPGAHQAVNAAGV 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAIS 358
           +        D D A+ ALS   P EGRG  +   L++G    + + SYNANPASM+AA  
Sbjct: 293 VAAALGAGVDPDLALDALSELKPTEGRGVAFYAQLSRGRVIEVVDESYNANPASMRAAFG 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL    P G+ R+IAV+G+M E+G  S++ H  LAE L    +  V   G    AL DAL
Sbjct: 353 VLKLRKPSGQDRKIAVIGEMLELGPDSRALHAALAEPLITAGVDQVIGVGEGARALMDAL 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           P      + ET +     +     DGDVV+VK SN+ G ++L++ L ++   
Sbjct: 413 PAEHRAAWCETAESAIETLSELARDGDVVLVKGSNASGVHKLVSSLRDKAKP 464


>gi|168182387|ref|ZP_02617051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
 gi|182674474|gb|EDT86435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Bf]
          Length = 462

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 208/462 (45%), Gaps = 13/462 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  + +      +  S +  +  Q +        +  G H   N L  +    +
Sbjct: 243 YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACGRV 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I  
Sbjct: 303 LDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNIKG 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423
                 IA+LG M E+G      H +++E      I  ++  G    A ++        +
Sbjct: 359 KR---TIALLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINKEN 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457


>gi|168180116|ref|ZP_02614780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
 gi|182669070|gb|EDT81046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum NCTC 2916]
          Length = 462

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 208/462 (45%), Gaps = 13/462 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +      S S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVSKSSYVIKVENTNKALLDLAKYYRGKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  + +      +  S +  +  Q +        +  G H   N L  +    +
Sbjct: 243 YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACGRV 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I  
Sbjct: 303 LDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNIKG 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423
                 IA+LG M E+G      H +++E      I  ++  G    A ++        +
Sbjct: 359 KR---TIALLGSMMELGAEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINKEN 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|146310296|ref|YP_001175370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter sp. 638]
 gi|145317172|gb|ABP59319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterobacter sp. 638]
          Length = 452

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 212/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T       + G   G      V+ ++ D+R I P   F A+KG  +D HDF   A
Sbjct: 1   MISI-TLRQAATVLNGELQGQ--DLTVDAVTTDTRKITPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V+  +      + +P   V D   A  +LA   R +    ++A+TGS GKT
Sbjct: 58  KENGAGALLVSRKL-----DIDLPQLVVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTEEHEYAVIELGANHQGEIAWTVD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +E +A AK EI+ GL + G   +N D++ +   +    
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYGGLPENGIAIMNADNNDWLNWQNIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +           + N+DF        S  +   ++     ++V+    G H   N L   
Sbjct: 233 SRKTWR--FSPNAANSDFSATNIHVTSHGTEFTLKTPTGDVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  D     L       GR    + A       L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATHDAIKTGLLNLKAVPGRLFPIQLAEK---KLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S++ HI + +      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHIQVGDAAKASGIDCVLSAGKLSQAISQA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  +  V+VK S S     +++ L E
Sbjct: 401 SGVGEHFADKTALITRLKKLVAEHQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|319899161|ref|YP_004159254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
 gi|319403125|emb|CBI76683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella
           clarridgeiae 73]
          Length = 473

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 203/472 (43%), Positives = 289/472 (61%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+ F  GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMNGFTVGCLPETFP-GISIDSRTLLEGDVFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  +  P+  V DVL +L KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAENRLDEMKKIDAPLIVVSDVLQSLEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S+NN  GVPLTLARMP+D D+ IFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASFNNCWGVPLTLARMPIDSDYAIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKSLEEIADAKAEIFEGLDKDGIALLNADDHFFSYLLQKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S  AD+Q ++ ++    S M V L  K + +     G HM QN L  L
Sbjct: 240 QFGVKKIRSFGQSNCADYQAKEVRRLENCSCMIVHLDQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                + AD+   + AL+ F  ++GRG  Y+ +L+ G    + + SYNANP SM+AA+ +
Sbjct: 300 AACDAVGADLAYVMLALARFSLQKGRGALYKLSLSNGGTFHLIDESYNANPTSMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G+ S+  H DL + + +  +  V+L G  +  L + L 
Sbjct: 360 LATGPIGIGGRRIAILGDMLELGDHSEKLHRDLLQPICVSGVHLVFLVGKEMKFLANDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             ++V +SE ++ +   + S + +GD++++KSS       ++  +L+ +  I
Sbjct: 420 SHVNVCHSENIEEILPLVFSEISNGDLIMIKSSRRIYLSNIVTAILDRYKVI 471


>gi|237794796|ref|YP_002862348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|229263655|gb|ACQ54688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 462

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    + +    S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEVKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIKFDILEQGKTAYRCFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   I +LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKR---TITLLGSMMELGSEGYRAHREVSEYARERGIDLLFSIGEFSEAYREGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +       +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEVVKELR 457


>gi|329726166|gb|EGG62638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 451

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 139/461 (30%), Positives = 208/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHFKKTINGVSIDSRKINEGALFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +   S G+   P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENKHSEGNQG-PIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+H+ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSHIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVNQVKNA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + ++ +        +E     +  +      +          NM      ++I
Sbjct: 241 KLISIGLNSDSTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                       +  H  +    R     +    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424
              GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+        
Sbjct: 354 ---GRKILILADVLELGPNSQLMHKQVGEYLKDKNIDVLYTFGKEASYIYDSGKVFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            Y +  D L   + S +   D V+VK S       +++ LL
Sbjct: 411 KYFDNKDQLIQTLISQVKPEDKVLVKGSRGMKLEEIVDALL 451


>gi|163815495|ref|ZP_02206868.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
 gi|158449132|gb|EDP26127.1| hypothetical protein COPEUT_01660 [Coprococcus eutactus ATCC 27759]
          Length = 495

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 224/470 (47%), Gaps = 18/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  ++L+A  G  +       +  I I+S+     + F  I G   DGH FI  A
Sbjct: 40  MMVDITVKNILEATGGVLLCGDENTVLTDICINSKEAKEGDLFVPIIGSRTDGHRFIESA 99

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q  A   + +     ++         VDD + AL  +    R R    ++A+TGSVGKT
Sbjct: 100 LQV-AAATLTSEH--DNVVVSDKAYIRVDDTVKALQAIGKYIRNRYDMPVVAVTGSVGKT 156

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+EM+T A+S+  K +   G+YN+  G P+T++RM  + D  + ELG+   GE+  LT 
Sbjct: 157 TTREMITAAVSAGMKCFHTEGNYNSVYGEPITVSRMTDEYDAAVLELGIGEPGEMDILTD 216

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I V+TTI  AH+     +E     K  I +G+ K GT+++N DD     +K +  
Sbjct: 217 IAQPDICVVTTIGVAHIEYMGSLENTRKEKLSIIKGMGKNGTLYINGDDPMLYAVKDEI- 275

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +Y++G  +  DF+    +     S  ++      + V    +G H  +N L+ +
Sbjct: 276 ---PCKVYTYGCGEGMDFRATNIRMEDGYSIYDMVHGDDVVTVKVGVMGLHNVRNSLVAM 332

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    + + KA   F          +     G +T+ID++YNA+P SMKA+  VL
Sbjct: 333 AVSHQLGVPYEKSSKAFENFRGLRQ-----KVIKLPGKYTIIDDTYNASPDSMKASTDVL 387

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    EGR+  VLGDM E+G+ S  +H ++ E L    I  V + G H   +K+AL  
Sbjct: 388 CDM--KCEGRKYIVLGDMLELGDRSDEYHREVGEYLRDKKIDEVIVIGEHAQKIKEALDE 445

Query: 421 S----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                         + + +++ + +   D+V++K+SN      ++N+L  
Sbjct: 446 CDTKYAKTVSFTDTEEIAIYLMALMKPEDIVLLKASNGMNLSEVVNILTN 495


>gi|148265989|ref|YP_001232695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Geobacter
           uraniireducens Rf4]
 gi|146399489|gb|ABQ28122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter uraniireducens Rf4]
          Length = 468

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 208/470 (44%), Gaps = 17/470 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++++A  G  IG      V+G+S DSR +A  E F A+KG  +DGHD++  AV +
Sbjct: 1   MFTIDEIIEATGGTRIGSGNDA-VSGVSTDSRQVAAGELFVALKGERFDGHDYLEAAVAR 59

Query: 64  GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D +A       +    V D L AL  LA   R R    ++ ITGS GKTTT
Sbjct: 60  GVRAFLVAADRLAGKQPPNDVIYVAVPDTLRALGDLAAWHRSRFDLPLVGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PL L R+     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILAQTGPGLKTSGNLNNLIGLPLMLLRLTKRDRWAVLEMGMSEPGEIDRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT    AHL +   +E +A AK E+F  L+  G    N DD     L ++  A 
Sbjct: 180 NPRIGVITNAFTAHLESMGSVEAVAKAKGELFMRLKTDGWAVYNADDP----LISRCPAP 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG                E     ++L G  + V     G H   N L     
Sbjct: 236 AGVKRLSFGLRGAEVSSEGIESLGREGLRFTLRLPGVDVPVRMKAYGLHNVYNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D +     L  F P + R              L+D+SYNANPASM AA+  L  
Sbjct: 296 AHLLGVDPELIRSGLEEFTPYDKRFSLEEIRG----VVLVDDSYNANPASMAAALVTLRD 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I    E R IA+LGDM E+G  S + H ++  +L+   +  ++  G     +        
Sbjct: 352 IR--EESRAIAILGDMLELGTGSVAAHREVG-LLAATCVERLYAMGEMAETVAAGAVDGG 408

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               ++  + T + +   ++  +  GD ++VK S       +   + + F
Sbjct: 409 LSPENIVVARTHEEIIADLRRRVAKGDNILVKGSRGMRMDIVAEAIRQGF 458


>gi|226948794|ref|YP_002803885.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|226844054|gb|ACO86720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 462

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKRA---IALLGSMRELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +       +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|294793909|ref|ZP_06759046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
 gi|294455479|gb|EFG23851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. 3_1_44]
          Length = 466

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 207/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG +           IS D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 18  FTLSQVVEATQGANAHTD-NIKFLDISTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 77  ATGAIVEKGRAVE----GIACIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         +YNN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 133 MVAAVLGTEFNVLKTEKNYNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +     +L  
Sbjct: 193 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 249 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 309 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 364

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 365 GKRK---IAMLGDMLELGDFSEEAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 421

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  ++   +          GDV++VK S      R++  L + 
Sbjct: 422 TFRCKSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 465


>gi|229171081|ref|ZP_04298679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228612411|gb|EEK69635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 458

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 219/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q + G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMVNGTGLAEQYEGITIQGVSIDTRKIENGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLSALQMLAKNYRNQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLIAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVALQATGT-HFKMNRDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
              +   I VLGDM E+G     FH ++ +++    I++V+  G     + +    +   
Sbjct: 357 GFAKK--IVVLGDMLELGNQEVQFHYEVGKLIDPAKIAYVFTYGKLGAQIAEGAKINFPI 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV++K+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKELQAVVDVKDVVLIKASRGMKLEEVITMLK 458


>gi|149183240|ref|ZP_01861684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
 gi|148849036|gb|EDL63242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           SG-1]
          Length = 458

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 211/465 (45%), Gaps = 15/465 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  +L + I+    +       + G+SIDSR I     F   KG   DGH F+  A++ G
Sbjct: 5   SLGELAKMIKVENDLSAFQDVAIGGVSIDSRKIEKGNLFIPFKGEKVDGHKFVEGAIKSG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+        +P+  V++ L AL  LA A R      ++ ITGS GKTTTK+
Sbjct: 65  AAASLWEKDV--PNPPEGLPIIIVENSLQALQNLATAYRHELGIKVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS   K     G++N+HIG+PLT+  +    +  + E+GMS  GEI  L+++  P
Sbjct: 123 MVANLLSLKYKVQKTQGNFNSHIGLPLTILALEKGTEVAVLEMGMSGFGEIEQLSNIALP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E IA+AK EI  GL++ G      ++    LLK +      
Sbjct: 183 DAAIITNIGESHLQDLGSREGIATAKMEIISGLKEDGLFVYYGEEP---LLKERIDKDWK 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FGK           K     S  +V  +  +  +    +G H   N L ++ +  
Sbjct: 240 FKVETFGKGTENTLYPLDVKTTDSGSVFKVNAEPDTEVM-LPVLGEHNVMNALASMLVAK 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +     +A       + R +       +    +++++YNA+P SM+AAI +LS + 
Sbjct: 299 EFDVEYKEMPEAFQQLKLTQMRMEMMEGKRGEK---ILNDAYNASPTSMRAAIGLLSGL- 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G++I V GDM E+G   +++H ++ + +    I  V+  G            +   
Sbjct: 355 -QGYGKKILVAGDMLELGPNEENYHYEVGQEVQKGKIDLVFTFGTLARQTARGAAENIGE 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +V   +    L   ++S L   ++++ K+S       +I  L E
Sbjct: 414 KNVFSFDDKQELTEKLESILHGDEIILFKASRGMKLEEIIESLTE 458


>gi|296332825|ref|ZP_06875285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305673171|ref|YP_003864843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150105|gb|EFG90994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305411415|gb|ADM36534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 457

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 214/465 (46%), Gaps = 20/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + ++G        Q  ++G++ D+R +   + F  +KG H++GH F+  A + G
Sbjct: 5   TVKNIAKMVKGTLTNPQYEQTVIHGVATDTRKLEQHQLFIPLKGEHFNGHTFVPQAFEAG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ +          +  V  VDD L AL +LA A        +I +TGS GKTTTK+
Sbjct: 65  VAAVLWDR--SEPNPPENQAVILVDDTLSALQQLAKAYLQELGTRVIGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP D +  + E+GMS  GEI  L+ L  P
Sbjct: 123 MIHAVLGTRYRVHKTGGNFNNHIGLPLTVLAMPEDTEIAVLEMGMSAKGEIDLLSRLANP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI  GL++ G +    D+   +           
Sbjct: 183 DAAVITNIGESHMQDLGSREGIAEAKLEIINGLKEDGVLIYIGDEPLLQ-------KTYS 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G     D+QL+   Q  E +   ++   K+  +   G    M     +     +
Sbjct: 236 CQTKTYGAGAQNDYQLQDVSQSEEGTHFTIKGMEKTFFIPILGKHNVMNAMAAI-----A 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  T   A       +  G R          ++I+++YNA+P SMKAAI +   + 
Sbjct: 291 AGAYFGITPEDAAKGLSGLKVTGMRLELIKTDSGISIINDAYNASPTSMKAAIQLTESL- 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
             G G+++ VLGDM E+G+L ++FH +   V+S   I  V+  G     + +   +    
Sbjct: 350 -EGYGKKMLVLGDMLELGDLEETFHKECGAVISPEKIDRVFTYGKLGAFIAEGALKHFEK 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V +      L   ++ +   GD+++ K+S       ++  L+E
Sbjct: 409 ERVSHYTEKKDLLQAVKENASKGDLILFKASRGMKLEEIVKDLIE 453


>gi|261405662|ref|YP_003241903.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
 gi|261282125|gb|ACX64096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. Y412MC10]
          Length = 473

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 204/467 (43%), Gaps = 14/467 (2%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F+   +  G
Sbjct: 5   SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLAGG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA A    S+A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQP--VPADLPLIFVEDTLKALQSLAAAYLSESRAKVVGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +    +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+++ RP
Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHAL 242
            + VIT +  AHL      EEIA AK EI  G++  G +  + D+     + A+  +   
Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEATVKP 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                ++FG     D         +    +    +          +G H   N L  + +
Sbjct: 243 EGLRTFTFGNQDTNDDYPTGLMFHARGI-IFTSSRHAGEGFSLPLLGRHNVVNALAAMAV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + L    +      +     +    R          T+++++YN++P ++KAA+ VL  
Sbjct: 302 ATHLGIGDEAIRSGFAH---LKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
           +  +     IAVLGDM E+G+  +SFH ++ E LS  N   V+  G   L   +      
Sbjct: 359 MKGYRRR--IAVLGDMLELGQREESFHAEIGEYLSPDNADLVFTYGPLSLHTANKAKARF 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               V      + L   +   + + D+V+VK+S       +++ L  
Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALKA 463


>gi|154500221|ref|ZP_02038259.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
 gi|150270953|gb|EDM98227.1| hypothetical protein BACCAP_03885 [Bacteroides capillosus ATCC
           29799]
          Length = 463

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 205/469 (43%), Gaps = 16/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T  D+L A++G  +G        ++ +  DSR+I     F  + G  +DGH +I 
Sbjct: 1   MEPI-TIRDILTAVKGRILGDFDNLDLEISRVETDSRTIHEGSLFVPLIGEQFDGHAYIT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++ GA       D  + +         VD    AL  LAV  + +    ++A+TGSVG
Sbjct: 60  SALEGGAAACFTQRDRESYLP--GKCYIRVDHTQRALRDLAVWYKKKFDIPVVAVTGSVG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+M+   L    K     G+ N  IG   TL R+       + E+GM+H GEI  +
Sbjct: 118 KTTTKDMVAAVLGEHYKVLKTEGNLNTDIGTCRTLFRLDKSYQIAVLEMGMNHPGEIEVM 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P + +IT I  +H+ +    E I  AK EIF   +      LN DD     L+ K
Sbjct: 178 SAIAQPDVCLITNIGDSHIEHLGSRENILKAKCEIFSHAKPGCLAVLNGDDPLLRTLEGK 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +    + G    AD  +            EV+    S +V    +G HM    LM
Sbjct: 238 LPEPILWCGGAPGLDYTADHLVSDGTS---NVCCEVKTPHTSCQVEIPALGSHMIYPTLM 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +        +   + +  F P + R    +        T+++++YNANP SM+AA+ 
Sbjct: 295 AAAVAEHFGVTAEEFRRGVLHFAPTKMRMNIIQ---RGEDITILNDTYNANPQSMRAAVE 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VLS+      GR+IAVLGDM E+G L+ + H  +   L    I  +   G     + DA 
Sbjct: 352 VLSKTHS---GRKIAVLGDMFELGTLAPALHAGIGTYLGKAGIDCLVAVGELAKNIYDAA 408

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++   VHY  T +     +   +     ++VK+S    F  L   L 
Sbjct: 409 REAMVPEVHYCATKEEALPVLAQVVKPHATILVKASRGMAFEDLTEYLK 457


>gi|238019062|ref|ZP_04599488.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
 gi|237864317|gb|EEP65607.1| hypothetical protein VEIDISOL_00924 [Veillonella dispar ATCC 17748]
          Length = 452

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 205/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A QG S           +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATQGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDAFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    VD+ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVD----GIVCIEVDNTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  D    + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTADHQACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +     +L  
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAQAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   IA+LGDM E+G+ ++  H ++ ++L+    S V+  G     +     ++   
Sbjct: 351 GKRK---IAMLGDMLELGDYTEQAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|313893646|ref|ZP_07827214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441790|gb|EFR60214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 452

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 205/464 (44%), Gaps = 17/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +++A  G S           +S D+R+I     F A+KG  +DGHDFI  A++KG
Sbjct: 4   FTLSQVVEATAGTSAHTD-NIKFLDVSTDTRTIESGFLFVALKGDTFDGHDFINTAIEKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V            I    V++ L A   LA   R R    ++AITGS GKTTTKE
Sbjct: 63  ATGAIVEKGRAVE----GIICIEVENTLVAYQNLARYHRRRFDIPVVAITGSSGKTTTKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +         ++NN IG+P TL R+  + +  + E+GM  LG+I  L  +  P
Sbjct: 119 MVAAVLGTEFNVLKTEKNFNNEIGLPKTLLRLTAEHEACVVEMGMRGLGQIEELALIAEP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT +  +H+      E IA AK E+   L +     LN DD + + +     +L  
Sbjct: 179 TMGIITNVGTSHIELLGSREAIAEAKGELIRCLPENSVAILNEDDPYVKAM----DSLAK 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G  +NA       +   +      +   +  ++    IG H   + L  +    
Sbjct: 235 GKTITYGIERNATCIGSHLRYKKDGIKFTCKCYDEVFDIFLPMIGEHNVYDALAAIVAGR 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T  K LS F          +  +      +++++YNANP+SM  AI  L Q+ 
Sbjct: 295 VLGIKSNTIRKGLSEFTGT----PMRQEIVPFEDIVILNDAYNANPSSMAEAIKALGQLE 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   IA+LGDM E+G+ S+  H ++ ++L+    S V+  G     +     ++   
Sbjct: 351 GKRK---IAMLGDMLELGDFSEDAHREIGQLLAEEGYSVVFTFGDAAAFIAKEAKKAGLT 407

Query: 425 HY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   +   +          GDV++VK S      R++  L + 
Sbjct: 408 TFRCNSHLEMANAYSDIREKGDVILVKGSRGLRMERVVEELKDR 451


>gi|194016042|ref|ZP_03054657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
 gi|194012397|gb|EDW21964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Bacillus pumilus
           ATCC 7061]
          Length = 454

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 219/463 (47%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T + + Q   G        +  + G++ D+R ++    F  + G H++GH F   AV+ G
Sbjct: 5   TVNQIAQMAGGTLSNQAFGEEQIYGVTTDTRKVSKGALFIPLIGEHFNGHTFASKAVELG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ N     +     +PV  VDD L AL +LA +        ++ ITGS GKTTTK+
Sbjct: 65  AAAVLWNQK--EANPPFGVPVILVDDTLAALQQLAKSYLKEENPRVVGITGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  + +   G++NNHIG+PLT+  MP   +  + E+GMS  GEI FL++L  P
Sbjct: 123 MIHSVLQTTYQVHKTDGNFNNHIGLPLTILAMPEGTEIAVLEMGMSAKGEIEFLSNLAEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  +H+ +    E IA AK EI +GL+K GT +   D+     L         
Sbjct: 183 ETAVITNIGESHMQDLGSREAIADAKCEITKGLKKDGTFYYLGDEP----LIRDRATALS 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +FG++++ D ++    Q +E +    Q++G +   +   +G H  +N L  + I  
Sbjct: 239 QQVKTFGEAEDCDIKVTHINQLAEGTE--FQVEGYAQGFLIPVLGKHNVKNALAAIAIGQ 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +     + L        R + ++        T+I+++YNA+P SMKAAI ++  + 
Sbjct: 297 HFGLNERQIAQGLMQTKLTGMRLELFKTEKG---ITVINDAYNASPTSMKAAIDLVGDMD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
                  I VLGDM EMG   +++H +L   +    I HV   G     + +   +S   
Sbjct: 354 GFANR--ILVLGDMLEMGSEEETYHYELGRYIKPEFIDHVMTYGRLGAFIAEGAKKSFGD 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V      + L   +       DVV+VK+S       +I  L
Sbjct: 412 ARVFSFMDKEELKKKLADVAGPDDVVLVKASRGMRLEEVITAL 454


>gi|29653482|ref|NP_819174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
 gi|29540744|gb|AAO89688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 493]
          Length = 446

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +GR    +         +ID+SYNANP S+ AAI+VL+ 
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     
Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GK 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|327392720|dbj|BAK10142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Pantoea ananatis AJ13355]
          Length = 452

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 210/469 (44%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L +   G   G      +N ++ D+R +     F AI G  +D HDF   A
Sbjct: 1   MIPV-SLSTLAEIASGTLHGD--DLVLNDVTTDTRKVTAGSLFVAIVGERFDAHDFAEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KG   ++V+  +      +S+P   V D   A  KLA   R ++ A ++A+TGS GKT
Sbjct: 58  IAKGVKALLVSKHL-----PVSVPQVVVKDTRIAFGKLAAWVRQQATARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  +  + + ELG +H GEI + T 
Sbjct: 113 SVKEMTASILRQCGETLHTAGNLNNDFGVPMTLLRLTPEHQYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +E +A AK EIF GL   GT  LN D + +   +   H
Sbjct: 173 LVRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIFYGLPARGTAILNADSNDWPRWQENLH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G        ++ + DF     +   + +   +       +++    G H   N L   
Sbjct: 233 --GKTVWRFSPQAADCDFGAHDIRIRQDGTHFVMHTPRGEADIILPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L       GR    R +       ++D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVDAPLSAVQAGLKRLQSVPGRLFPVRLS---EHQLILDDSYNANVGSMVAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S+ FH ++        +  V  +G     L +    
Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEKFHREVGLAAKAAGLDRVLSTGQFSHFLSE---S 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   ++  L +     V++K S S    +++  L E+
Sbjct: 401 SGVGEHFSDKTALTERLRQLLSEHQEMTVLIKGSRSAAMEQVVQSLQEK 449


>gi|227356428|ref|ZP_03840816.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
 gi|227163538|gb|EEI48459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis ATCC 29906]
          Length = 460

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 140/475 (29%), Positives = 204/475 (42%), Gaps = 22/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +   + Q  QG           Q  +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIAL-SLETIAQVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    QKGA  V+VN  +      +  P   V D   A+  +A   R  S A I+A+TGS
Sbjct: 60  IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +V+P  A++  +  AH+  F  ++ IA AK EIF GL++ GT  +N   +   L +
Sbjct: 175 YTVDMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              ++   +  +S      ADF           +   +      + +     G H   N 
Sbjct: 235 QHFNSRQTQWSFSLSADTQADFYPTDIVVNQLTTDFTLHTPEGCVAITLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    + L+V     GR              ++D++YNAN  SM A 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTG---KIVLDDTYNANDGSMMAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G +I V GDM E+GE S+  H D+        I  V   G +   +  
Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
                 H  +      L   +   L   DV  V+VK S S     ++N L E F 
Sbjct: 408 ENEGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 459


>gi|319406010|emb|CBI79641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp. AR
           15-3]
          Length = 473

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 202/472 (42%), Positives = 285/472 (60%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G ++G +P+   +GISIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTVGCLPEV-FSGISIDSRTLVEGDVFFCIKGRHLDGHDFATHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +   + P+  V DV  AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKTTAPLIVVPDVFQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL +  K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETAGKVHANLSSLNNCWGVPLTLARMPIDSDYGIFEIGMNHKDEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLVTRIAAGHMEFFKNLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+  I SFG+S  A++Q ++       S M V L  K + +     G HM QN L  L
Sbjct: 240 QCGVNEIRSFGQSNYANYQAKEVCLLENCSCMIVHLGQKDVMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                + A++   + AL  F  ++GRG  Y+ +L+ G    + + SYNANPASM+AA+ +
Sbjct: 300 AACDAVGANLARVVLALGRFSLQKGRGALYKLSLSNGGVFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+      +GRRIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVDGRRIAILGDMLELGDHSEKLHRDLLEPIRVSGADLVFLVGKEMRVLASDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             I V++++ ++ +F  + S + +GD++++KSS+      ++N +L  +  I
Sbjct: 420 PHITVYHAQDIEEIFPLVFSEISNGDLIMIKSSHRIYLSNIVNEILSRYKVI 471


>gi|114570632|ref|YP_757312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
 gi|114341094|gb|ABI66374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Maricaulis maris MCS10]
          Length = 474

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 182/466 (39%), Positives = 252/466 (54%), Gaps = 8/466 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NPLWT    + A  G  IG  P   V+GISID+R++ P + F A++    DGHDF+  A+
Sbjct: 7   NPLWTSGQAMAATGGMLIGE-PGWTVSGISIDTRTLQPGDLFVALQDAR-DGHDFVAAAM 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA   +V             P   V D L  L  L  AAR RS A  +A+TGSVGKT+
Sbjct: 65  EKGASACLVERGDTGVE-----PALMVKDALEGLRALGAAARDRSDAIRVAVTGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L     S    +  + SYNNH GVPLTLARMP D    +FELGM+H GEIR L+ L
Sbjct: 120 VKEALAAVFRSSGPAHWSVKSYNNHWGVPLTLARMPRDTGRAVFELGMNHAGEIRDLSSL 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +   +E IA AK+EIF+GLE+ G      DD   E +   +  
Sbjct: 180 VRPHVALITRIAPAHLEHLGSVEAIADAKSEIFDGLEQDGVAIYPSDDPLAERIARHARH 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG S +A  ++ +++   + S     + G          G H A N      
Sbjct: 240 SCAAFLLDFGTSASAAIRIEEFETGLDGSRGVANVLGVRAPFRLAATGAHWAWNAGAIFA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISVL 360
             +    D     +ALS    + GRG+  R A  + G FTL+D++YNANP SM AAI+ L
Sbjct: 300 AAAGAGLDARDVAEALSDVGAEPGRGRAARIALPDGGAFTLLDDAYNANPVSMAAAIAAL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P  +GRRIAVLGDM E+G      H +LA+ L+   +  V   G  +  L DALP+
Sbjct: 360 GAADPGPDGRRIAVLGDMLELGPDEDRLHAELADHLAAAGVDSVLTCGRRMKHLHDALPK 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++   Y++   G    ++S +  GDVV++K SN  G +++ ++LL+
Sbjct: 420 TVRAGYAQDAAGGLEQVKSLVRSGDVVLIKGSNGSGLHKIASVLLD 465


>gi|160947010|ref|ZP_02094213.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
 gi|158447394|gb|EDP24389.1| hypothetical protein PEPMIC_00972 [Parvimonas micra ATCC 33270]
          Length = 456

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 121/465 (26%), Positives = 204/465 (43%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + + G  +        + G+S D+R I     F  + G  +DGH+F   AV+KG
Sbjct: 5   TLETIAKIVGGTLVTTSMKDKIIEGVSTDTREIQVHNLFIPLVGEKFDGHNFAFDAVKKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   + +           I    VD+ L A  KLA +    + A ++ ITGS GKT TK+
Sbjct: 65  AVATLWDKRHPTPYLDAGI--IIVDNTLQAYQKLASSYLKATGAKVVGITGSNGKTGTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L    + +    + NN IGVP T+  M +D +  + E+GM   GEI+ LT++ RP
Sbjct: 123 ILASILKENFRVHNTAKNLNNEIGVPKTIMEMDLDDEVVVLEMGMERFGEIKTLTNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI EGL+  G    N DD     +  +      
Sbjct: 183 DIAVITNIGDSHLLELGTKENIARAKFEILEGLKPDGVFIFNNDDEVLREVIKEYTI--T 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +   G  +++D  +R  +   E S                 IG H   N  + + I  
Sbjct: 241 QKVIKIGTREDSDVIIRPIRSDEEGSSFS----IGEYAYSIPFIGKHQIYNASVAITIAG 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  +    ++ LS       R       ++   F ++++ Y +NP S+ + I  +  + 
Sbjct: 297 LLGMNYGDIVRGLSRVKLTGMRM----ELIHLSSFDVLNDCYKSNPQSLTSCIETVYTMK 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            +     I +L DM E+GE  +  H  + E +    I +V   G     + +   R+ +V
Sbjct: 353 GYKNK--ILILSDMLELGENERKLHFSVGEKIDRNKIDYVICIGDLAKEIYNGANRNFNV 410

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + ET + +   ++  + +  +++VK S      ++I +L E
Sbjct: 411 NNLFHFETNEEVVNKVRELISEDTLIMVKGSRGMKLEKIIEMLKE 455


>gi|152974077|ref|YP_001373594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152022829|gb|ABS20599.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 458

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 214/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + + + G  +          G+SID+R +     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQIEKMVNGTGLAEKYFDMTAQGVSIDTRKMEKGNVYVPIQGERFDGHSFVEKAIESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+       ++PV  V+D L AL  LA   R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWKRDV--QNPPANMPVIFVEDTLEALQMLAKNYRDQLNVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  D +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEEDTEIAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL++ G    N D+        K      
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPKMDLAVE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +   +      +      +G H   N L ++ I  
Sbjct: 243 TI--TFGDARANDYYPTSVTLQATGTHFTMNRDENVLFY-LPVLGKHNVYNALASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEVVKTNSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   ++  +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEELVKNLKDIVDMEDVVLVKASRGMKMEEIITMLK 458


>gi|254518692|ref|ZP_05130748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
 gi|226912441|gb|EEH97642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium sp. 7_2_43FAA]
          Length = 453

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 16/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            + ++LL+A+ G  I    +   N + ID+R I     +FAI G  ++G+ F++ A  KG
Sbjct: 3   LSLNELLEAMNGELIVKG-KTDFNSVCIDTRKIEKNNIYFAINGERFNGNKFVIEAFSKG 61

Query: 65  AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+  +     + ++  V  V+D   AL  LA   R +    +I +TGS GKT+TK
Sbjct: 62  ASIAIVDEILFDLNNTDNLQTVIKVEDTEKALLNLANYYRKKLGLKVIGVTGSCGKTSTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   K +   G++NN IG+PL +  +   +D  + E+GMS+LGEI  L +  R
Sbjct: 122 DLIAAFLSEKYKVFKTKGNFNNQIGLPLMILELDSSIDVAVLEMGMSNLGEIDVLANCAR 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  +H+ N    E I  AK+EIF   ++T T+ +N +D     +K K   + 
Sbjct: 182 PDIAVITNIGLSHIENLKTQENILKAKSEIFNYFDETNTLIINGEDENLLKIKDKCFEIL 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G +   D          +++   V+ + +         G H   N ++ + + 
Sbjct: 242 K-----IGYNHEYDVYAFNIILEEDKTTFTVKDKNEESIFTIPMAGKHNILNSMLAVEVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D   K +        R       + +   T+I++ YNA+P SMK+++ V   +
Sbjct: 297 KKLNVTFDEMKKGIKNLEATSMRL----QVIKRNKITIINDCYNASPDSMKSSMDV---L 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S +  GR+IA+LG M E+GE +   HI++     L  +  +   G +    K       +
Sbjct: 350 SSYKTGRKIAILGTMNELGEEAVKSHIEVGNYA-LTKVDLLIAVGEYKDYFKKGF-TGEN 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    T +     + + + + DVV+VK+S    F  +++ L E
Sbjct: 408 IITFATKEECIDKLDTIIKENDVVLVKASRGMKFEDIVSSLEE 450


>gi|319407507|emb|CBI81155.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamin
           opimelate--D-alanyl-D-alanine ligase [Bartonella sp.
           1-1C]
          Length = 472

 Score =  275 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 204/472 (43%), Positives = 285/472 (60%), Gaps = 2/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ A+ G +IG +P+ F  G+SIDSR++   + FF IKG H DGHDF  HA
Sbjct: 1   MIALWDKQALISAMDGFTIGCLPEIFP-GVSIDSRTLVAGDIFFCIKGHHLDGHDFAAHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG++VV  + +  +  ++ P+  V DVL AL KLA AAR RSKA IIAITGSVGKT
Sbjct: 60  YAQGAGVLVVAQNRLDEMKKITAPLIVVPDVLQALEKLAQAARKRSKAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L  AL ++ K +A + S NN  GVPLTLARMP+D D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQALETVGKVHANLASLNNCWGVPLTLARMPIDSDYGIFEIGMNHKNEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ +IT IA  H+  F  +EEIA AKAEIFEGL+K G   LN DD FF  L  K+ 
Sbjct: 180 LVCPHVVLITRIAAGHMEFFKDLEEIADAKAEIFEGLDKNGIALLNADDHFFSYLLKKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+S +AD+Q+++ +     S M V    K M +     G HM QN L  L
Sbjct: 240 QCGVKEIRSFGRSNSADYQVKEVRLLENCSCMVVHFYQKDMMIKIGAPGQHMVQNGLSVL 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                + AD+     AL  F  ++GRG  Y+ +L+ G    + + SYNANP SM  A+ +
Sbjct: 300 AACDTVCADLAHITLALGRFSLQKGRGALYKLSLSNGGMFHLIDESYNANPVSMLTALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+RIA+LGDM E+G+ S+  H DL E + +     V+L G  +  L   L 
Sbjct: 360 LATGPIGVGGKRIAILGDMLELGDHSKKLHRDLLEPIRVSGADLVFLVGKEMGVLARDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + V+++E ++ +F  + S + +GD++++KSS+      ++  +L  +  I
Sbjct: 420 AYVTVYHAENIEEIFPLVFSEISNGDLIMIKSSHHIYLSNIVTEILNRYKVI 471


>gi|317472883|ref|ZP_07932189.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899603|gb|EFV21611.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Anaerostipes sp. 3_2_56FAA]
          Length = 451

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 221/464 (47%), Gaps = 19/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G
Sbjct: 4   MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            G  +      A       P+  V D L A+ ++A   R +    II ITGSVGKTTT+E
Sbjct: 64  -GASLTQEHEQAEGP---HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP
Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AV+T +  +H+      + I   K +I  GL + G ++LN D+     +  K      
Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDND----MIRKHIGYVT 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                FG S++  ++    ++   Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSEDCSYRAEGTEEIHGQTHFTFVHENMKEPVILNVLGDHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F        + +  L    +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYEVPMETIKRQLATFSG------QRQNILKIHGYTVIDDAYNASPDSMKAGLKILSDYK 349

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR+IAVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 350 DS--GRKIAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKKYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  + D L  +++  L + DVV++K+SN    Y +   L 
Sbjct: 408 LKTKWFSSNDELISYLKDYLKENDVVLIKASNGMKLYEVAKALE 451


>gi|261338920|ref|ZP_05966778.1| hypothetical protein ENTCAN_05118 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318745|gb|EFC57683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 452

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 213/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T       ++G   G      ++ ++ D+R +     F A+KG  +D HDF+  A
Sbjct: 1   MISI-TLSQAAAILKGTLQGQ--DLTIDDVTTDTRKVTAGCLFVALKGERFDAHDFVDSA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KENGAGALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T    G+ NN IGVP+TL R+  + +F + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILGQCGNTLYTAGNLNNDIGVPMTLLRLTKEHEFAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A++  +A AHL  F  +E +A AK EI+ GL   G   +N D++ +   ++   
Sbjct: 173 LTCPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPADGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +           + N+DF        S  +   +      ++V+    G H   N L   
Sbjct: 233 SRKTWR--FSPNAANSDFTATNIHVTSHGTEFTLNTPTGGVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  D     L+      GR      A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGASHDAIKTGLANLKAVPGRLFPIPLAEN---KLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S++ HI + E      +  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVMVVGDMGELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISQA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +  T   L   + + + +  +  V+VK S S     +++ L E
Sbjct: 401 SGVGEHFATKAELIERLNALIAEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|161831178|ref|YP_001596093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
 gi|161763045|gb|ABX78687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 331]
          Length = 446

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLIFVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +GR    +         +ID+SYNANP S+ AAI+VL+ 
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     
Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GK 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSFSMRMGNIAHALLEE 446


>gi|212213346|ref|YP_002304282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212011756|gb|ACJ19137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuG_Q212]
          Length = 446

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN  +       ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNRAV-----KTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYAVLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRPLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +GR    +         +ID+SYNANP S+ AAI+VL+ 
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     
Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|153938138|ref|YP_001390806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|152934034|gb|ABS39532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318876|gb|ADF99253.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Clostridium botulinum F str. 230613]
          Length = 462

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKR---TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +       +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|319654686|ref|ZP_08008765.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
 gi|317393602|gb|EFV74361.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. 2_A_57_CT2]
          Length = 457

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 199/469 (42%), Gaps = 16/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T  ++ Q I+    +       + G+SIDSR I     F   KG + DGH F+  
Sbjct: 1   MIK-KTLQEIEQMIKIENDVSSFHNTSIQGVSIDSRKIGRGNLFVPFKGENSDGHRFVED 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++KGA       D+      L +P+  V+D L AL +LA + R   K  +  ITGS GK
Sbjct: 60  AIEKGAAAAFWQKDV--PNPPLHLPILIVEDTLTALQELARSYRDELKIKVAGITGSNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    LS   K     G+YNNHIG+PLT+  +  D +  + E+GMS  GEI FLT
Sbjct: 118 TTTKDMTANLLSLQYKVQKTEGNYNNHIGLPLTILALEEDTEIAVLEMGMSGRGEIDFLT 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP   +IT I  +HL +    E IA AK EI  GL++ G +    D+   +      
Sbjct: 178 KLARPDAVIITNIGESHLQDLGSREGIAEAKLEIVNGLQENGLVIYYGDEPLLDEKLKSY 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +        +FG++   D      KQ    S   + +      +   G    +     M 
Sbjct: 238 NGSAALR--TFGRTGKNDVYPMDIKQNDSGSTFGINVSSGKFYLPVLGTHNVLNALAAM- 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                          K    F   +    R      Q    +I+++YNA+P SM AAI +
Sbjct: 295 ----IAAAHFGVPYEKMNEGFASLKLTNMRMELLEGQSGEKIINDAYNASPTSMNAAIEL 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +  + +   I VLGDM E+G   + FH    + +    + +V+  G     +     
Sbjct: 351 IANLPGYKKK--ILVLGDMLELGPQEEDFHYSTGKSVDPEKVDYVFTFGKLGEYIAKGAK 408

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  V        L   ++  +    +++VK+S       +++ L 
Sbjct: 409 EVLPHERVAAFTDKQPLIEELKKHVDPETIILVKASRGMKLEEVVSALQ 457


>gi|310814906|ref|YP_003962870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753641|gb|ADO41570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 478

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 175/476 (36%), Positives = 246/476 (51%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G          V G+SID+R++ P + F A+     DGHDF+  A
Sbjct: 1   MSALWTGVEAAAATGGRLTR---DFAVTGVSIDTRTLQPGDLFVALAAAR-DGHDFVASA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   V      + P+  VDDVL AL  +  AAR R+KA I+A+TGSVGKT
Sbjct: 57  LEKGAAAALVSR--VPEGLPANAPLLIVDDVLAALEAMGRAARARTKAKIVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L++  +T+A   SYNNH GVPLTLARMP D ++G+ ELGMSH GEI  L+ 
Sbjct: 115 STKEMLRTVLAAAGRTHASEASYNNHWGVPLTLARMPADTEYGVLELGMSHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+PH+ VITT+A AH   F  IE IA  KA IFEGL   GT  +N D +   +L A + 
Sbjct: 175 MVQPHVGVITTVAAAHFEAFGSIEGIAHEKAAIFEGLLPRGTAVVNGDLAVSPILIAAAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G   + +FG++     +L   +  +  +    +       +     G H A N L  +
Sbjct: 235 DKGA-RVITFGETPRNHHRLTDLRVRAGVTVASGRAWRTPFHMKVASAGRHFAVNALAVI 293

Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                L  D   A+ AL+ + P       +            F LID++YNANP SM AA
Sbjct: 294 AAADALGMDRARALVALAEWAPPAGRGMRQIISLDPLREGRTFELIDDAYNANPTSMAAA 353

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRR+AVLGDM E+G    + H  LAE  +L     +   G  
Sbjct: 354 LDVLALSEPVDGVGRLARGRRVAVLGDMLELGPDEMALHAALAEDHALTAADLIVCVGTR 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL  ALP +   ++  T + +   I      GDVV+VK S       +++ L +
Sbjct: 414 MKALHAALP-AERAYWLATPEEILPHITRIADAGDVVLVKGSKGSRVSIIVDALRK 468


>gi|306844334|ref|ZP_07476926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
 gi|306275406|gb|EFM57147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO1]
          Length = 481

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGMPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STIPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|322805775|emb|CBZ03340.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Clostridium botulinum H04402 065]
          Length = 462

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKSSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  ++   +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMSEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAENIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A K+       
Sbjct: 357 KGKR---TIALLGSMMELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +            +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNQEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|312114848|ref|YP_004012444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219977|gb|ADP71345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 477

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 184/468 (39%), Positives = 256/468 (54%), Gaps = 4/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT  ++ +A+            V G+SIDSR++   + F AIKG   DGH FI  A 
Sbjct: 8   KPLWTGAEIARALG--IAPPAADVVVTGVSIDSRTVERGDLFVAIKGERSDGHRFITAAF 65

Query: 62  QKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             GA   +V+ D    +  +   P+F VDD   AL +L   AR R+ A I A+TGSVGKT
Sbjct: 66  DNGAAGALVSRDYAPQVPLAADEPLFRVDDPFAALEELGRVARARTDARIAAVTGSVGKT 125

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L     T+A + SYNN +GVPL+LARMP    FG+FE+GM+H GEI  L  
Sbjct: 126 TTKEMLRVMLGESGPTHASVKSYNNFMGVPLSLARMPAASRFGVFEIGMNHAGEIVPLAK 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++T +AP H+  F+   EIA AKAEIFEGLE+ G   L  D+  FE L A   
Sbjct: 186 LVRPHVAIVTWVAPVHIEFFTSEAEIARAKAEIFEGLEQGGAAILPADNPHFESLAA-FA 244

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  FG S  A+ +L  +++  E S +   +  + +       G H+AQN +  L
Sbjct: 245 RERSARVVPFGLSSEAEARLVSFERTEEGSVVTADIFDQRVTFALAAPGRHLAQNAVAAL 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             VS+L  +V+ A  AL+ F   EGRG+       +G   +IDESYNANPASM AA+ VL
Sbjct: 305 AGVSLLGGNVEAAAAALARFEAPEGRGRSATFETPRGPVLVIDESYNANPASMHAALDVL 364

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             + P    RRIAVLGDM E+G  +  FH  LA  +    I  V+ +G  + +L ++LP 
Sbjct: 365 GAVPPSRYARRIAVLGDMLELGHDAPQFHASLASAVDSNAIDLVFCAGPLMASLHESLPA 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                ++   + L   +  ++  GD V++K S      ++   L   F
Sbjct: 425 EKRGGWANASEDLRGPVLDAVCGGDAVMIKGSLGSRMGQIAEALKARF 472


>gi|256061492|ref|ZP_05451636.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella neotomae 5K33]
 gi|261325499|ref|ZP_05964696.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|261301479|gb|EEY04976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
          Length = 481

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|254719466|ref|ZP_05181277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. 83/13]
 gi|265984472|ref|ZP_06097207.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306839245|ref|ZP_07472062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
 gi|264663064|gb|EEZ33325.1| hypothetical protein BAKG_00801 [Brucella sp. 83/13]
 gi|306405792|gb|EFM62054.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. NF 2653]
          Length = 481

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|295098590|emb|CBK87680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 452

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 212/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T       +QG   G      +  ++ D+R +     F A+KG  +D HDF   A
Sbjct: 1   MISI-TLSQAAAVLQGMLHGQ--DLTIEAVTTDTRKVTAGCLFVALKGERFDAHDFAQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R + +  ++A+TGS GKT
Sbjct: 58  KDNGAGALLVSRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVRTRVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTHEHEYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL   G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPDDGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +           + N+DF        S  +   +      +EV+    G H   N L   
Sbjct: 233 SRKTWR--FSPNAANSDFSATNIHVTSHGTEFTLTTPTGDIEVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A        L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGASHAAIKAGLANLKAVPGRLFPIQLAEN---KLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S++ H+ + E      +  V  +G    A+ DA   
Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHVQVGEAAKAAGLDRVLSAGTLSKAISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   +++ + +  +  V+VK S S     +++ L E
Sbjct: 401 SEVGEHFADKSALIERLKALITEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|17986858|ref|NP_539492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D - alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290328|ref|YP_222121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700252|ref|YP_414826.1| cytoplasmic peptidoglycan synthetase [Brucella melitensis biovar
           Abortus 2308]
 gi|148559362|ref|YP_001259328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189024561|ref|YP_001935329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225852917|ref|YP_002733150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237815835|ref|ZP_04594832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|254689629|ref|ZP_05152883.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697771|ref|ZP_05159599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254702156|ref|ZP_05163984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis bv. 5 str. 513]
 gi|254730660|ref|ZP_05189238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256045065|ref|ZP_05447966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113988|ref|ZP_05454771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|256257879|ref|ZP_05463415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 9 str. C68]
 gi|256263602|ref|ZP_05466134.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|256369851|ref|YP_003107362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260546870|ref|ZP_05822609.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260565336|ref|ZP_05835820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260755157|ref|ZP_05867505.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260758376|ref|ZP_05870724.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260762202|ref|ZP_05874545.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884170|ref|ZP_05895784.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261752726|ref|ZP_05996435.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|265991492|ref|ZP_06104049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995330|ref|ZP_06107887.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|297248715|ref|ZP_06932433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|17982495|gb|AAL51756.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d- alanyl ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|62196460|gb|AAX74760.1| MurF, UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616353|emb|CAJ11410.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Chaperonin
           Cpn60:Cytoplasmic peptidoglycan synthetases,
           C-terminal:UDP-N-ac [Brucella melitensis biovar Abortus
           2308]
 gi|148370619|gb|ABQ60598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           ovis ATCC 25840]
 gi|189020133|gb|ACD72855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|225641282|gb|ACO01196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis ATCC 23457]
 gi|237789133|gb|EEP63344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus str. 2308 A]
 gi|256000014|gb|ACU48413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           microti CCM 4915]
 gi|260095920|gb|EEW79797.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|260151404|gb|EEW86498.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|260668694|gb|EEX55634.1| hypothetical protein BABG_02820 [Brucella abortus bv. 4 str. 292]
 gi|260672634|gb|EEX59455.1| hypothetical protein BADG_01709 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675265|gb|EEX62086.1| hypothetical protein BAAG_02822 [Brucella abortus bv. 6 str. 870]
 gi|260873698|gb|EEX80767.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|261742479|gb|EEY30405.1| hypothetical protein BAEG_01713 [Brucella suis bv. 5 str. 513]
 gi|262766443|gb|EEZ12232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|263002276|gb|EEZ14851.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093653|gb|EEZ17658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella melitensis bv. 2 str. 63/9]
 gi|297175884|gb|EFH35231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Brucella
           abortus bv. 5 str. B3196]
 gi|326409459|gb|ADZ66524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539165|gb|ADZ87380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella melitensis M5-90]
          Length = 481

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|160895265|ref|ZP_02076037.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
 gi|156863144|gb|EDO56575.1| hypothetical protein CLOL250_02825 [Clostridium sp. L2-50]
          Length = 501

 Score =  274 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 136/465 (29%), Positives = 219/465 (47%), Gaps = 18/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D++ A  G  +       + G+ IDSR     + F  + G   DGH FI  A+++ A
Sbjct: 51  TVKDIVNATGGFLLCGDEDTPITGLCIDSRKAQAGDLFIPLLGNKVDGHRFIEPAMER-A 109

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +      I     P   VDD + AL  +    R R     I +TGSVGKTTT+EM
Sbjct: 110 SATLTSEHDNVVISEK--PFIRVDDTMKALQAIGKDIRGRYDIPYIGVTGSVGKTTTREM 167

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  A+ + +  +   G+ N+ IGVP+TL+RM    D  + E+G+S  G++  L+ +VRP 
Sbjct: 168 IAAAVGTGRHCFQTNGNENSQIGVPMTLSRMTDGYDAAVIEMGISEPGQMEILSDIVRPS 227

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I  AH+      E I   K  I   +++ G + LN DD     +K         
Sbjct: 228 ICVVTMIGVAHIEFMKTQENIRDEKLSIVNHMKENGLLLLNGDDPLLREIKDDM----SC 283

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG  +  DFQ    +   +    +    G+++ VV   +G H  +N L  + +   
Sbjct: 284 QTLTFGIDEVCDFQGSDVQCGEQGMEFDCTHNGETVHVVMDVLGKHNVRNALAGIAVAYQ 343

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   + TA KA   F       +R R    +  +T++D++YNA+P SMKA+I VL  +  
Sbjct: 344 LGIPMATAAKAFEHFEG-----QRQRIIRMENRYTILDDTYNASPDSMKASIDVLCDL-- 396

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421
             +G++ AVL DM E+G+ S S+H  + E L    I  V + G   L +K AL       
Sbjct: 397 DCKGKKYAVLADMNELGDDSVSYHRQIGEYLRDKKIDEVIVVGEKALDIKKALDECDTKY 456

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                    + + L++ + +   D+V++K SNS     ++ +L  
Sbjct: 457 AKTFSFMDNEEVALYLMAIMKPEDIVLLKGSNSMKLNEIVKILTN 501


>gi|254694119|ref|ZP_05155947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|261214419|ref|ZP_05928700.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
 gi|260916026|gb|EEX82887.1| hypothetical protein BACG_02853 [Brucella abortus bv. 3 str. Tulya]
          Length = 481

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 LTVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|242241489|ref|ZP_04795934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
 gi|242235032|gb|EES37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis W23144]
          Length = 451

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 204/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +       +  P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENR-YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+++ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     +   
Sbjct: 184 IAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +  +      +          NM      ++I
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                       +  H  +    R     +    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424
              GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+        
Sbjct: 354 ---GRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|296101249|ref|YP_003611395.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055708|gb|ADF60446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 452

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T       +QG   G      ++ ++ D+R +     F A+KG  +D HDF   A
Sbjct: 1   MISL-TLGKAATLLQGTLHGQ--DLTIDAVTTDTRKVTAGCLFVALKGERFDAHDFAEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++VN  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KENGAGALLVNRKL-----DIDLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +E +A AK EI+ GL   G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLEGVAKAKGEIYTGLPDNGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +           + ++DF        S  +   +      +EV+    G H   N L   
Sbjct: 233 SRKTWR--FSPNAADSDFTATHIHVTSHGTEFTLNTPTGGIEVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATHDAIKTGLANLKAVPGRLFPVQLAEN---KLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ S++ HI + E      +  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVMVVGDMAELGDESEACHIQVGEAAKAAGLDCVLSAGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   +++ + +  +  V+VK S S     +++ L E
Sbjct: 401 SGVGEHFADKAALIERLKTLIAEKQIVTVLVKGSRSAAMEEVVHALQE 448


>gi|306843218|ref|ZP_07475829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
 gi|306286583|gb|EFM58160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella sp. BO2]
          Length = 481

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL  F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGYFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHIVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP S++AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSIRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  +   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQTGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I + Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQIEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|187779890|ref|ZP_02996363.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
 gi|187773515|gb|EDU37317.1| hypothetical protein CLOSPO_03486 [Clostridium sporogenes ATCC
           15579]
          Length = 462

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 210/462 (45%), Gaps = 13/462 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVQTAIEKGAS 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V+    AL  LA   + +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFDKEKIGKSSYVIKVESTNKALLDLAKYYKSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VAAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK E+ +   K   + +N D+      ++  + +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEVTDFFSKDSILIVNGDNDLLSNFESDKYKVCK- 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  + + +    ++ S +  +  Q +        +  G H   N L  +    +
Sbjct: 245 --IGTEKKFDFNGENLNLEEESIEFDVLEQGETAYKGFNVNVPGKHNVLNSLTAIACGKV 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  + +     +        R    +       FT+I++ YNA+P SMKAAI V+  +  
Sbjct: 303 LDMNYEDIQTGIKNLKATSMRLDIIKEKG----FTIINDCYNASPDSMKAAIDVMKNVKG 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIH 423
                 IA+LG M E+G      H +++E      I  ++  G    A K+        +
Sbjct: 359 KR---TIALLGSMRELGNEGYRAHREVSEYAKEKGIDLLFSIGEFSEAYKEGFEEINKEN 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +    +I++ + DGD+++VK+S +     ++  L 
Sbjct: 416 YKSFLNNEEAAKYIKNIIKDGDIILVKASRAMKLEEIVKELR 457


>gi|52784364|ref|YP_090193.1| hypothetical protein BLi00544 [Bacillus licheniformis ATCC 14580]
 gi|52346866|gb|AAU39500.1| MurF [Bacillus licheniformis ATCC 14580]
          Length = 491

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 214/465 (46%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +  +G           + G+S DSR +A  + F  + G  ++GH F   A Q+G
Sbjct: 40  TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 99

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N            PV  VDD L AL KLA A R +    ++ +TGS GKTTTK+
Sbjct: 100 VAAVLWNR--SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 157

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  K +   G+YNNHIG+PLT+  MP D +  I E+GMS  GEI FLT L RP
Sbjct: 158 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 217

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI  GL K GT+    D+     L  +      
Sbjct: 218 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP----LLTERLNQPP 273

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG+    D+QL    Q  E +   V+       +   G       N+   L  ++
Sbjct: 274 YDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFFIPVLGKH-----NVKNALAAIA 328

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  +           +  G R           +I+++YNA+P SMKAAI ++ Q+ 
Sbjct: 329 AGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQM- 387

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G G++I VLGDM E+GE  ++FH ++ + ++  +I  ++  G     +     +    
Sbjct: 388 -KGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 446

Query: 425 HYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H       E  D L   ++     GD+++VK+S       +I  L
Sbjct: 447 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 491


>gi|52078992|ref|YP_077783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|319648704|ref|ZP_08002915.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
 gi|52002203|gb|AAU22145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bacillus
           licheniformis ATCC 14580]
 gi|317389123|gb|EFV69939.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Bacillus
           sp. BT1B_CT2]
          Length = 456

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 143/465 (30%), Positives = 214/465 (46%), Gaps = 19/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +  +G           + G+S DSR +A  + F  + G  ++GH F   A Q+G
Sbjct: 5   TVKEIAEMSEGVLTNEAFEGRLIKGVSTDSRKLAKGQLFIPLAGERFNGHVFAEQAFQEG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V+ N            PV  VDD L AL KLA A R +    ++ +TGS GKTTTK+
Sbjct: 65  VAAVLWNR--SEPNPPEGKPVILVDDTLEALQKLAKAYRNQLDVKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +  K +   G+YNNHIG+PLT+  MP D +  I E+GMS  GEI FLT L RP
Sbjct: 123 MIHAVLGTEYKVHKTEGNYNNHIGLPLTILAMPEDTEVAILEMGMSAKGEIDFLTRLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVIT I  +HL      E IA AK EI  GL K GT+    D+     L  +      
Sbjct: 183 DIAVITNIGESHLLELGSREGIAEAKLEIVNGLSKEGTLIYVGDEP----LLTERLNQPP 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG+    D+QL    Q  E +   V+       +   G       N+   L  ++
Sbjct: 239 YDTKTFGEDPAFDYQLEDMTQTEEGTAFRVRGIENGFFIPVLGKH-----NVKNALAAIA 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  +           +  G R           +I+++YNA+P SMKAAI ++ Q+ 
Sbjct: 294 AGDLLNVSRAHIAEGLTKLKVTGMRLELVKTPDGVAIINDAYNASPTSMKAAIELVEQM- 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G G++I VLGDM E+GE  ++FH ++ + ++  +I  ++  G     +     +    
Sbjct: 353 -KGYGKKILVLGDMLELGEGEKAFHEEIGQAVNPDSIDFLFTYGELGAYIAKGALKHFPE 411

Query: 425 HYS-----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           H       E  D L   ++     GD+++VK+S       +I  L
Sbjct: 412 HRVLHFNPEEKDSLKKTLKEKANTGDLILVKASRGMRLEDVIKDL 456


>gi|319399569|gb|EFV87824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus epidermidis FRI909]
          Length = 451

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 204/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I         +  +NG+SIDSR I     F   KG + DGH FI  A+  GA
Sbjct: 5   TLEQIKNWIDCEIDEKHLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G V    +       +  P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAVFSEKENR-YSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+  K     G+YNN IG+PLTL  +  D +  I E+GMS   +I  L+++ +P 
Sbjct: 124 IESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEP---LLKPHVTQVKDA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G + +  +        +E     +  +      +          NM      ++I
Sbjct: 241 KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPIL------GTHNMKNAAIAIAI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                       +  H  +    R     +    T+I+++YNA+P SMKAAI  LS +  
Sbjct: 295 GHELGLNETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHV 424
              GR+I +L D+ E+G  SQ  H  + E L   NI  ++  G     + D+        
Sbjct: 354 ---GRKILILADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  + L   + S +   D V+VK S       +++ LL
Sbjct: 411 KHFDQKEQLIQTLISQVKPEDKVLVKGSRGMKLEEVVDALL 451


>gi|170760055|ref|YP_001786881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407044|gb|ACA55455.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 462

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 208/464 (44%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LAEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +        S  V  V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKIGESSYVIKVENTNKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VGAVLSEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK E+ +   K   + +N DD F    ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEVTDFFCKDSILIINGDDDFLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKGFSVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RALDINYKDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKR---TIALLGSMRELGNEGYRAHREVSEYAREKGIDLLFSIGEFGEAYREGFGEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +            +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNKEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|169343573|ref|ZP_02864572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298133|gb|EDS80223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens C str. JGS1495]
          Length = 453

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|134298539|ref|YP_001112035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfotomaculum reducens MI-1]
 gi|134051239|gb|ABO49210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfotomaculum reducens MI-1]
          Length = 457

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 215/467 (46%), Gaps = 17/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ Q I G  +   P   + GI  DSR   P+E F A++G   DGHDF   A+++G
Sbjct: 4   YTIEEIAQVIGGTLLQGDPVTKIKGIHTDSRRAKPRELFVALQGQQADGHDFARKAIEQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++V+ ++     +  IPV  V + L AL +LA   R R    ++A+TGS GKT+TK+
Sbjct: 64  ASALLVSREITG--IAPQIPVVLVKNTLQALQQLASHNRSRLNIPVVAVTGSNGKTSTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L++  KT    G++NN +G+PLTL  +  +    + E+GM   GEI FL  L +P
Sbjct: 122 MIAAVLNTRFKTLKTEGNFNNELGLPLTLLGLGEEHQVAVVEMGMRGPGEIDFLAGLAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AVIT I  AHL     +E IA AK E+   + + G   LN D  +   L         
Sbjct: 182 TGAVITNIGEAHLERLGSVENIALAKTEVLAHIGRDGFAILNADSPYLGELARNCQG--- 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +      D Q    +         +   G   E+     G H   N L  +G+  
Sbjct: 239 -KVWLYSLEGIGDLQASNIRPEGTGVRFNISSPGGKEEIYLPVPGSHNVMNSLAAIGVGL 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++   + L+       R       L+     +I+++YNANP+S KAA+ VL + +
Sbjct: 298 QLGLQLEEIAQGLAQLCLTHSRL----QILSSNGRVIINDTYNANPSSTKAALKVLKETA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
              +   IAVLG+M E+G+L QS H ++ E  +   + ++   G     +     +    
Sbjct: 354 RSRK---IAVLGNMYELGDLEQSGHQEVGEAAAAIPVDYLISVGNLAQWITQGGLKGGLS 410

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V   +        +   L  GD ++VK S       ++  ++++
Sbjct: 411 QERVFQCQENSEAVEVLGKILKPGDTILVKGSRGMHMEYIVREIMKD 457


>gi|110634361|ref|YP_674569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mesorhizobium sp. BNC1]
 gi|110285345|gb|ABG63404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chelativorans sp. BNC1]
          Length = 477

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 213/470 (45%), Positives = 293/470 (62%), Gaps = 1/470 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  DL+ A+ G   G +P+G V GISIDSR++   EAFFAIKG  +DGHDF   A
Sbjct: 1   MTLLWTSDDLVAAVGGRPFGALPEG-VTGISIDSRTLQRGEAFFAIKGDRFDGHDFATLA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GAGL+V++ + + ++G L++P   V DVL AL  LA AAR RS+  +IA+TGS GKT
Sbjct: 60  MAAGAGLLVISEEKLPALGRLTVPKVVVPDVLKALRDLAAAARARSRGKVIAVTGSAGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  ALSS+   +A   S+NNH GVPL+LAR+P   DF IFE+GM+H GEI  LT 
Sbjct: 120 TTKEMLRHALSSVGTVHAAARSFNNHWGVPLSLARLPAGADFAIFEIGMNHAGEIEPLTQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+PHIA++T IA AHL +F  ++EIA AK EIF G+   G   +N DD  F+LL   + 
Sbjct: 180 LVKPHIAIVTLIAAAHLGHFKSLDEIAEAKGEIFAGVVPGGHAIINRDDQRFKLLADMAA 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             GI+ ++ FG++  + F+L + +   + S + +++ G+ +       G HM QN L  +
Sbjct: 240 EAGIRNVWGFGENVRSHFRLAQQEPQGDHSVVTIKVAGQELIGRIGAPGRHMVQNALSVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +  ADV   + AL  F  + GRGK +   + +G FTLIDESYNANPASMKAA+ VL
Sbjct: 300 GAGYLAGADVSKLLAALGDFSAEAGRGKLHHLGIGEGMFTLIDESYNANPASMKAALQVL 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   GRRIAVLGDM E+G  S+  H  L ++++      + L+G  + AL D  P 
Sbjct: 360 DSSPVSNGGRRIAVLGDMLELGVHSEKLHAALGDIIAGTKTDILLLAGTEMKALADNAPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              V Y  T++ L   +   L  GD ++VKSSN  G  RL+++LL+ +PA
Sbjct: 420 GRLVEYRPTVEELQPLLLELLQPGDAIMVKSSNGIGLSRLVDVLLKNYPA 469


>gi|329924130|ref|ZP_08279363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
 gi|328940862|gb|EGG37172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus sp. HGF5]
          Length = 473

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 200/467 (42%), Gaps = 14/467 (2%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F+   +  G
Sbjct: 5   SLKSIADMCGGTLSRNQDDNIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFVESVLASG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA      S+A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQP--VPADLPLILVEDTLKALQSLAAVYLSESRAKVVGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +    +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+++ RP
Sbjct: 123 MVSALLETTYNVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSNIARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHAL 242
            + VIT +  AHL      EEIA AK EI  G++  G +  + D+     +    ++   
Sbjct: 183 DLTVITNVGEAHLLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIRQVLAEEETVKP 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                Y+FG     D         +           +        +      N++  L  
Sbjct: 243 EGLRTYTFGNQDTNDDYPTGLMFHARGIIFT----SRLHAGEGFSLPLLGRHNVVNALAA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +++            S F   +    R          T+++++YN++P ++KAA+ VL  
Sbjct: 299 MAVAAHLGIGDEAIRSGFAHLKLSSMRIEAVETAFGVTVLNDAYNSSPTAVKAAVDVLGD 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
           +  +     IAVLGDM E+G+  +SFH ++ + LS  N   V+  G   L   +      
Sbjct: 359 MKGYRRR--IAVLGDMLELGQREESFHAEIGDYLSPDNADLVFTYGPLSLHTANKAKARF 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               V      + L   +   + + D+V+VK+S       +++ L  
Sbjct: 417 PEGAVLSFTDKEKLIEALLEQVTEKDIVLVKASRGMRLEHVVDALKA 463


>gi|167745890|ref|ZP_02418017.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
 gi|167654405|gb|EDR98534.1| hypothetical protein ANACAC_00584 [Anaerostipes caccae DSM 14662]
          Length = 451

 Score =  273 bits (697), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 222/464 (47%), Gaps = 19/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  D+L A  G  +       +N +S DSR + P   F  I G   + H F+  A++ G
Sbjct: 4   MTIQDILAATGGTLLCGDASMPINRLSTDSRDVGPHTLFVPIVGERVNAHKFVESALKDG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            G  +      A       P+  V D L A+ ++A   R +    II ITGSVGKTTT+E
Sbjct: 64  -GASLTQEHEQAEGP---HPIIKVPDTLKAMQQIASFYRNKMSLPIIGITGSVGKTTTRE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    + +  +G+ N+ +GVPLTL R+      G+ E+GMS  G+I  L  ++RP
Sbjct: 120 MIAHVLKGKYRVFETVGNQNSQVGVPLTLDRLTSRDQIGVLEMGMSEPGQITILGEIIRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + AV+T +  +H+      + I   K +I  GL + G ++LN D+     +  K      
Sbjct: 180 NAAVVTNVGVSHIEQMGSRDNICREKLDIQNGLPENGVLYLNGDND----MIRKHIGYVT 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                FG SK+  ++    K+ + Q+      +     V+ + +G H   N L  + +  
Sbjct: 236 HPYEFFGFSKDCSYRAEDSKEINGQTHFTFVHEDMREPVILNVLGNHNVSNALAAIALGL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++T  + L+ F        + +  L    +T+ID++YNA+P SMKA + +LS   
Sbjct: 296 AYDVPMETIKRQLATFSG------QRQNILKIHGYTVIDDAYNASPDSMKAGLKILSDY- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GR++AVL DM E+G  S  +H ++ E L   +I+ ++++G       +A  +   S
Sbjct: 349 -QDSGRKVAVLSDMLELGPDSPDYHREVGEFLGTADITDLYITGTLSKEYAEAAQKKNLS 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  + D L  +++  L + DVV++K+SN    Y +   L 
Sbjct: 408 LKTKWFSSNDELISYLKDYLKEHDVVLIKASNGMKLYEVAKALE 451


>gi|226328333|ref|ZP_03803851.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
 gi|225203066|gb|EEG85420.1| hypothetical protein PROPEN_02227 [Proteus penneri ATCC 35198]
          Length = 461

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 143/475 (30%), Positives = 212/475 (44%), Gaps = 21/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL +  +++Q  +G    I         +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIPL-SLGNIVQITKGKLSNIAQNQADQLIIKSISTDSRKIDEDCLFIALAGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    +KG+  V+VN ++      +  P   V D   A+ ++A   R  S A I+A+TGS
Sbjct: 60  IADVKEKGSVAVLVNREI-----DVDCPQLIVKDTHLAMGEIAAHIRSLSHAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLAPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  ++V+P  A++  +  AH+  F  +E IA AK EIF  L++ GT  +N D +   L +
Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLEGIAQAKGEIFTHLKEQGTAIINLDSNDLPLWE 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              +A   K  +S    +NADF   +       +   +      +EV     G H   N 
Sbjct: 235 HHLNARQTKWSFSLSAQRNADFYPTEIAVKQFITNFTLHTPEGCVEVTLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +     A ++     LS      GR         +    ++D++YNAN  SM A 
Sbjct: 295 LAASALALSAGATLEDIRLGLSTLKAVPGRLYPVELTTGKM---VLDDTYNANDGSMIAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+  +       V GDM E+G+ S+  H D+        I  V   G H   + D
Sbjct: 352 LQVLSQLPGYK---IFFVAGDMAELGKDSEKCHRDVGRFAHNAGIDSVLTVGEHSHFISD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
                 H  +      L   +   L   DV  V+VK S S     ++N L E F 
Sbjct: 409 ENQGGQHFAF---KADLLAQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 460


>gi|49474460|ref|YP_032502.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
 gi|49239964|emb|CAF26369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Bartonella
           quintana str. Toulouse]
          Length = 473

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 197/471 (41%), Positives = 285/471 (60%), Gaps = 2/471 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L+ AI G  IG +P+   +GISIDSR++   + FF IKG H DGHDF   A
Sbjct: 1   MTALWDKQALIAAIDGFVIGCMPET-FSGISIDSRTLTEGDIFFCIKGHHLDGHDFAAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GAG+++V  + +  +  +S P+  V DVL AL KLA AAR RS+A IIAITGSVGKT
Sbjct: 60  YARGAGVLIVAENRLTDMEKISAPLIVVPDVLQALEKLAQAARKRSRAKIIAITGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L+++ K +A + S NN  GVPLTLARMPV+ D+GIFE+GM+H  EIR L  
Sbjct: 120 TTKEALKQVLATVGKVHANLASLNNCWGVPLTLARMPVESDYGIFEIGMNHADEIRPLVK 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+ ++T IA  H+  F  ++ IA AKAEIFEGL++ G   LN D+ FF  L  K+ 
Sbjct: 180 LVCPHVVLVTHIAAGHMGFFKNLKGIADAKAEIFEGLDEEGVALLNADNGFFSYLVRKAK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+K I SFG+++N+D+Q R  +  ++ S M V + G+   +     G H+ QN L  +
Sbjct: 240 QCGVKKILSFGEAENSDYQARNIRLRTDFSSMIVHIGGQEKVIKIGAPGRHIVQNSLAVI 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
               ++  D      +LS F  ++GRG RY+  L  G    + + SYNANPASM+AA+ +
Sbjct: 300 AACDVIGIDFACVSLSLSRFSLQKGRGVRYQLFLPNGGEFHLIDESYNANPASMRAALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRRIA+LGDM E+G  S+  H DL + +   + + V+L G  +  L   L 
Sbjct: 360 LATGPVGVGGRRIALLGDMLELGAYSEKLHRDLVKPICRSSANPVFLFGEAMKFLAIDLS 419

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + V+Y+E ++ +   I + + +GD++++KSS S     ++  LL+ +  
Sbjct: 420 AYVKVYYAENIEKILPLIFAEISNGDLLMIKSSRSLYSSDIVTALLDHYKV 470


>gi|168210776|ref|ZP_02636401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711125|gb|EDT23307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 453

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|229542520|ref|ZP_04431580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
 gi|229326940|gb|EEN92615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Bacillus
           coagulans 36D1]
          Length = 458

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 135/443 (30%), Positives = 208/443 (46%), Gaps = 12/443 (2%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            +  V+G+ IDSR I     +  + G H DGH ++  A ++GA   +   D+       +
Sbjct: 24  NETLVHGVCIDSRKIEKGNLYVPLTGRHADGHQYVEDAFRRGAAASLWQKDV--PNPPAN 81

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +P+  V+D   +L +L+ + R   +A ++ ITGS GKTTTK+M+   LS   K     G+
Sbjct: 82  VPLLIVEDTEKSLQELSKSYRNALRAKVVGITGSNGKTTTKDMVASVLSEKFKVQKTEGN 141

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NNH GVPLTL  +  D +  + E+GMS  GEI FLT + RP +A+IT I  AH+ N   
Sbjct: 142 FNNHQGVPLTLLSLDEDTEIAVVEMGMSAKGEISFLTSIARPDVAIITNIGEAHIQNLGS 201

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E IA AK EI EGL + G +    D+    LL+ +   +      +FGK    D    +
Sbjct: 202 REAIADAKLEITEGLPENGLLIYMGDEP---LLQERVPNITGIRTKTFGKGHGNDLYPVE 258

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           WKQ +  S       G         +G +   N L  +          +     L     
Sbjct: 259 WKQETSGSTFRTNASGDIDFY-LPVLGEYNVINSLAAILAGREFGMPFEEIRAGLGKTRL 317

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R   A       +I+++YNA+P SM+AAI ++ Q    G GR+I VLGDM E+G
Sbjct: 318 ---SAMRMEMADGINGSKIINDAYNASPTSMRAAIRLVEQF--EGTGRKILVLGDMLELG 372

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSL 441
           E   +FH ++   L+   I  V+  G     + +A       V   E    L   ++  +
Sbjct: 373 EKEAAFHREVGRDLNPEKIDFVFTYGKLGRLIAEACDFPDNRVFAFEDKKRLIDMLKGKI 432

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
             GD+V+VK+S       ++  +
Sbjct: 433 GAGDLVLVKASRGMQLEEVVKAI 455


>gi|110802783|ref|YP_699144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
 gi|110683284|gb|ABG86654.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens SM101]
          Length = 453

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 209/468 (44%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEAYVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTRRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P   +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDFGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPNAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYSKENGIEKVLCFGDFSKNIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|225627886|ref|ZP_03785922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|254708107|ref|ZP_05169935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710476|ref|ZP_05172287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis B2/94]
 gi|254714469|ref|ZP_05176280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M644/93/1]
 gi|254717367|ref|ZP_05179178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M13/05/1]
 gi|256031970|ref|ZP_05445584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160169|ref|ZP_05457863.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti M490/95/1]
 gi|256255375|ref|ZP_05460911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti B1/94]
 gi|260169107|ref|ZP_05755918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           sp. F5/99]
 gi|261219198|ref|ZP_05933479.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261222577|ref|ZP_05936858.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|261315610|ref|ZP_05954807.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261318048|ref|ZP_05957245.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261322259|ref|ZP_05961456.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261758614|ref|ZP_06002323.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|265989079|ref|ZP_06101636.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
 gi|265998542|ref|ZP_06111099.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|225617049|gb|EEH14095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella ceti str. Cudo]
 gi|260921161|gb|EEX87814.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
 gi|260924287|gb|EEX90855.1| hypothetical protein BAJG_02643 [Brucella ceti M13/05/1]
 gi|261294949|gb|EEX98445.1| hypothetical protein BAIG_02833 [Brucella ceti M644/93/1]
 gi|261297271|gb|EEY00768.1| hypothetical protein BAHG_01697 [Brucella pinnipedialis B2/94]
 gi|261304636|gb|EEY08133.1| hypothetical protein BAGG_02770 [Brucella pinnipedialis M163/99/10]
 gi|261738598|gb|EEY26594.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|262553166|gb|EEZ09000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|264661276|gb|EEZ31537.1| hypothetical protein BALG_01657 [Brucella pinnipedialis M292/94/1]
          Length = 481

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 224/472 (47%), Positives = 305/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHLS+F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLSHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|118443059|ref|YP_878011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
 gi|118133515|gb|ABK60559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           novyi NT]
          Length = 457

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 222/465 (47%), Gaps = 13/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++A++G           N IS D+R I     F A+KG +++ +D+I+ A  K
Sbjct: 3   LLKFEEIVKAVRGKVHINSGNHKYNNISTDTRKITKDSIFVALKGDNFNANDYIVDASVK 62

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G+ L +V+      S  + +  +  V++   AL  LA   R +    +I ITGS GKT+T
Sbjct: 63  GSNLCIVDEIKFKDSDLNENTSIILVENTRKALLDLAELYRSKLDIKVIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN +G+PL +  +    D  + E+GMS+  EI  L  + 
Sbjct: 123 KDLTAAALSSKYKVFKTQGNFNNEVGLPLMIFSLDNSYDVAVLEMGMSNFDEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + +K+     
Sbjct: 183 KPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSVLIVNKENDLLKTVKS----- 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + S G  K+ D+               V  + +         G H   N ++ +  
Sbjct: 238 NDYKLMSIGFEKDVDYTAEDIFTDENHIEFTVCHKDEKERFNIPVPGKHNILNSMLAIVA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  + D   + +                + +  FT++D+SYNA+P SM+AAI V++ 
Sbjct: 298 GRTLGIEYDKLKQGIKNLS----VTSMRLDIVKKDGFTIVDDSYNASPDSMRAAIDVINT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I  + +   IA+LG M E+G+ S  FH ++AE     NI  +   G    A K+     I
Sbjct: 354 IKGNRK---IAILGTMKELGKDSYKFHKEVAEYAKENNIDFLITVGEFNEAYKEGYNNDI 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +T++    FI ++L   D+++VK+S S  F  ++N L ++
Sbjct: 411 NFMAFDTIEDASDFITNNLNKEDIILVKASRSMKFEYIVNKLKDK 455


>gi|302333728|gb|ADL23921.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 452

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S PV  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNTLVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDCVLVKGSRGMKLEEVVNALI 451


>gi|197285921|ref|YP_002151793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Proteus mirabilis HI4320]
 gi|194683408|emb|CAR44154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Proteus
           mirabilis HI4320]
          Length = 460

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 139/475 (29%), Positives = 204/475 (42%), Gaps = 22/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +   +    QG           Q  +  IS DSR I     F A+ G  +D HDF
Sbjct: 1   MIAL-SLETIALVTQGTLSTITQSQANQLMIKSISTDSRKIDDACLFIALAGDRFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I    QKGA  V+VN  +      +  P   V D   A+  +A   R  S A I+A+TGS
Sbjct: 60  IADVKQKGAVAVLVNRKI-----DVECPQIIVKDTRLAMGHIAAYIRSLSNAKIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L    +T    G+ NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTASILRHCGETLYTHGNLNNDIGVPLTLFRLTPEHRFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  ++V+P  A++  +  AH+  F  ++ IA AK EIF GL++ GT  +N   +   L +
Sbjct: 175 YTVNMVKPDSALVNNLFSAHIEGFGSLQGIAQAKGEIFTGLKEQGTAIINQQSNDVALWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              ++   +  +S      ADF           +   +      + +     G H   N 
Sbjct: 235 QHFNSRQTQWSFSLSADSQADFYPTNIVVNQLTTDFTLHTPEGGVAITLPLPGRHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    + L+V     GR              ++D++YNAN  SM A 
Sbjct: 295 LAASALALSVGATLTDIQQGLAVLKAVPGRLYPVELTTG---KIVLDDTYNANDGSMIAG 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G +I V GDM E+GE S+  H D+        I  V   G +   +  
Sbjct: 352 LQVLSQLP----GYKIFVAGDMAELGEDSEKCHRDVGRFAHQVGIDRVLTVGHYSQFISQ 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
                 H  +      L   +   L   DV  V+VK S S     ++N L E F 
Sbjct: 408 ENKGGEHFSF---KADLLTQLIPLLQQHDVVSVLVKGSRSSAMEDIVNALKECFE 459


>gi|168215490|ref|ZP_02641115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
 gi|182382364|gb|EDT79843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens NCTC 8239]
          Length = 453

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 212/468 (45%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+IR L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIRELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N +   +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFEIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L+       R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 IKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   +  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YKNKEELINDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|290476457|ref|YP_003469362.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
 gi|289175795|emb|CBJ82598.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus bovienii SS-2004]
          Length = 460

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 135/475 (28%), Positives = 209/475 (44%), Gaps = 22/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L +   G       Q      +N + IDSR +     F A+KG  +D HDF
Sbjct: 1   MIPL-TLKQLTKLTGGVLYHTSEQQAATCQINTVEIDSRKMVRGGLFIALKGEKFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +    ++GAG ++VN  +      +  P   V++   A+ KLA   R +SKA I+A+TGS
Sbjct: 60  VADVAKQGAGALLVNRRL-----EIDCPQVVVENTRLAMGKLAAWVRQQSKARIVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G++NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTAAILCQRGHTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +  P  A++  +  AHL  F  +  +A AK EIF GL   GT  +N D + +   +
Sbjct: 175 YTAEMTCPESALVNNLFAAHLEGFGSLAGVAKAKGEIFAGLSSAGTAIINLDSNDWTHWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      ++      ADF     ++    +   +     ++EV     G H   N 
Sbjct: 235 QGMSEPQAVWRFAVSPVPEADFYATDIQEQPLATSFCLHTPIGNIEVTLPLPGKHNIANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L    P  GR    R A       ++D++YNAN  SM AA
Sbjct: 295 LAASALAISVGASLSDIRAGLLELKPVSGRLFPIRLAEG---KIVLDDTYNANIGSMIAA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            + LSQ+     G  + V+GDM E+G+ +   H  + E L+   I  +   G     + +
Sbjct: 352 ANTLSQMP----GYHVMVVGDMGELGDQTVECHRQVGEALASTKIDKIMSVGEFSSHISE 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
               S    +      L   +   L   ++  +++K S S     ++N L E F 
Sbjct: 408 ---TSGRGQHFANKAELVAALLPLLEQHEMISILIKGSRSAAMEEVVNTLKENFQ 459


>gi|23502306|ref|NP_698433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
 gi|23348283|gb|AAN30348.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis 1330]
          Length = 481

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 223/472 (47%), Positives = 304/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|110801170|ref|YP_696544.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675817|gb|ABG84804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens ATCC 13124]
          Length = 453

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSYKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|168215220|ref|ZP_02640845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713368|gb|EDT25550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 456

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 212/468 (45%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 4   MLEL-NLQEIVKATKGVLLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLEA 62

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 63  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 123 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 182

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  
Sbjct: 183 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGSLPSAE 242

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 243 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L+       R +  +       F+++++ YN++P ++K+AI V
Sbjct: 298 IAIAKELGVSFEEMKRGLNNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 354 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 410

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 411 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 456


>gi|168206085|ref|ZP_02632090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662454|gb|EDT15137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 453

 Score =  272 bits (695), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 211/468 (45%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPSAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKVGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLILG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|258511602|ref|YP_003185036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478328|gb|ACV58647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 455

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 218/467 (46%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +F + ++ + G   +   P   V G++ID R + P  AF A  G   DGH F+  
Sbjct: 1   MTPM-SFANFVRVVGGTPVLHEAPDVTVTGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA + VV  D+  ++G    P   V + L A+  LA   R + +  ++ ITGS GK
Sbjct: 60  AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERGQFEGPVVGITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   L ++        + NN +G+PLT+ +        + E+GM  LG+I  L 
Sbjct: 116 TTTKEMVAAVLGALGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+I VIT I   H+      E IA AK E+   L   G   LN DD +   ++ ++
Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPNDGIAVLNGDDPWLRRMQHRT 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     +G  +  D +        E    EV     +  +    +G H   N L  
Sbjct: 236 SARILW----YGMGEGCDIRATSVTWSQEGMSFEVDTPHGTATLRIRLLGQHNVMNALAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   +            +    +     ++ G  T+ID++YNA+P+S+ A++ V
Sbjct: 292 IAVGQTLGISLGDIQIG----LGRVEAQRGRLRLVDAGDVTVIDDAYNASPSSVGASLEV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I+    G R+AVLGDM E+GE++   H ++   ++   +  +   G   + +  A  
Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHREVGRRVASAGVDRLLCVGVLAVEMARAAE 405

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +    V +   ++ L   + S L  GDVV+VK+S      R ++ +
Sbjct: 406 EAGVPVVRHFNALEELLASVGSYLQPGDVVLVKASRGVQLDRAVDAI 452


>gi|254466053|ref|ZP_05079464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
 gi|206686961|gb|EDZ47443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodobacterales bacterium Y4I]
          Length = 466

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 179/466 (38%), Positives = 257/466 (55%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT ++   A  G + G      V+G+SID+R+IAP + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTANEAAAATGGRAQG---DWAVSGLSIDTRTIAPGDMFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V+   V        P+  VDDV   L  L  A+R R+ A ++A+TGSVGKT
Sbjct: 56  LEKGAGAALVSR--VPEGVPADAPLLIVDDVQAGLEALGKASRARTDAKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  
Sbjct: 114 STKEMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +E IA  KA I EGLE  G   LN D +   +L+  + 
Sbjct: 174 PARPHVAMVTTVAAVHLEAFDNVEGIAREKAAIMEGLEPGGVAVLNADIAEAHVLRDVAS 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG+   +       +D+ L       E++       G+ +E+    +G H A N L  L
Sbjct: 234 DLGVSARWF--GESASDYTLHSAGIEGEETVARAIANGREVELHIQSLGAHFAMNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L AD   A  +L+++ P +GRG R    L  G  TL+D+SYNANP SM AA++VL
Sbjct: 292 ACVEALGADPVKAAGSLALWSPVKGRGVREAIRLEGGTITLLDDSYNANPTSMAAALAVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +     G+GRRIA  GDM E+G      H  LA++ ++  I  +   G  + AL +ALP 
Sbjct: 352 AATP--GQGRRIAYAGDMKELGPQEVELHAGLADLDAVKGIDKIHCIGPLMRALHEALPE 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + +T       + S +  GD+V+ K S S    ++++ + E
Sbjct: 410 GKRGGWYQTSAEAVPGLASEIQGGDIVLAKGSLSMALAKIVDGIRE 455


>gi|163843691|ref|YP_001628095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
 gi|163674414|gb|ABY38525.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella suis ATCC 23445]
          Length = 481

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              AGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AADAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPISMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|182626141|ref|ZP_02953901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908578|gb|EDT71103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 453

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 211/468 (45%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L +  
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIAAFFDKNNTLVVCGNDDFLGALPSAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGDFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + +GD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICEGDIILVKASRSLKFEEITKALLEK 453


>gi|165918432|ref|ZP_02218518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
 gi|165917938|gb|EDR36542.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii RSA 334]
          Length = 446

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +GR    +         +ID+SYNANP S+ AAI+VL+ 
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     
Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|18310843|ref|NP_562777.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium perfringens str. 13]
 gi|18145525|dbj|BAB81567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Clostridium
           perfringens str. 13]
          Length = 453

 Score =  272 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 210/468 (44%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++++A +G  +       +  +S D+R I     F A+KG +++G++++L A
Sbjct: 1   MLEL-NLQEIVKATKGALLKEADVKEIKAVSTDTRKIEEGTMFIALKGENFNGNNYVLDA 59

Query: 61  VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             KGA + +V+      +     + +  V +   AL  LA   R +    ++ ITGS GK
Sbjct: 60  FNKGAKIAIVDEVKCDLNELKEDVALIKVQNTGRALMDLAKFYREKLGLKVVGITGSAGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   LS   K +   G++NN IG+PL +  +    D  I E+GM  LG+I+ L 
Sbjct: 120 TSTKDLVAAVLSDKYKVFKTKGNFNNEIGLPLMILELDSTYDVAILEMGMRGLGQIKELA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P + +IT I  +H+      E I  AK EI    +K  T+ +  +D F   L    
Sbjct: 180 EIASPDLGIITNIGISHIEILKTRENILKAKMEIATFFDKNNTLVVCGNDDFLGALPEAE 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +        G  +N     +        S   V    K  E      G H   N+++ 
Sbjct: 240 YKIVKT-----GVGENFKIGAKNIALEELSSKFTVYDGEKEEEFSLDMPGEHNISNLMLG 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   + L        R +  +       F+++++ YN++P ++K+AI V
Sbjct: 295 IAIAKELGVSFEEMKRGLKNIEATSMRLELIKKDG----FSILNDCYNSSPVAVKSAIDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  I      RRIAVLG M E+G  S+  H ++ +      I  V   G     +K+   
Sbjct: 351 MKNI---EGKRRIAVLGTMRELGHKSEEAHEEIGKYAKENGIEKVLCFGNFSENIKEGYG 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V   E  + L   + + + DGD+++VK+S S  F  +   LLE+
Sbjct: 408 EGCTV--YENKEELIKDLLNIICDGDIILVKASRSLKFEEITKALLEK 453


>gi|300722055|ref|YP_003711335.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
 gi|297628552|emb|CBJ89124.1| D-alanine:D-alanine-adding enzyme [Xenorhabdus nematophila ATCC
           19061]
          Length = 460

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 141/475 (29%), Positives = 219/475 (46%), Gaps = 22/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L +  +G    +  Q      +N +  DSR I     F A+KG  +D HDF
Sbjct: 1   MIPL-TVQQLSRLTEGTLYHVTEQQAAALQINTVKTDSRKIVCGGLFIALKGEKFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               V++GAG ++V+  +      +  P   V D   A+ KLA   R +SKA ++A+TGS
Sbjct: 60  AADVVKQGAGALLVSRRL-----DIDCPQVVVKDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G++NN IGVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNFNNDIGVPLTLFRLTEEHQFAVIELGANHIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + RP  A++  +  AHL  F  +  +A AK EIF GL   GT  +N D + +   +
Sbjct: 175 YTTAMTRPESALVNNLFSAHLEGFGSLAGVAKAKGEIFAGLAPEGTAIINLDSNDWGNWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      +S   +  ADF      +    +   +      +E++    G H   N 
Sbjct: 235 HGIREQQRVWHFSVTPAAGADFYATDIVEQPLATHFCLHTPIGKIELILPLPGRHNVANA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A ++     LS      GR      +      T++D++YNAN  SM AA
Sbjct: 295 LAASALAISVGASLEDICAGLSALKAVPGRLFPIHLSAG---KTVLDDTYNANTGSMIAA 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            +VLSQ+S    G R+ V+GDM E+G+ +   H ++ + ++  NI  V+  G     + D
Sbjct: 352 ANVLSQMS----GYRVMVVGDMGELGKQAAECHREVGKAVATTNIDKVFSVGTLSSHISD 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
           A   S    +      L   +   L   ++  +++K S S     ++N L E F 
Sbjct: 408 A---SGRGQHFANKTELVAALLPLLEQHEMISILIKGSRSTAMEEVVNALKENFQ 459


>gi|154706157|ref|YP_001425292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|154355443|gb|ABS76905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii Dugway 5J108-111]
          Length = 446

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 139/464 (29%), Positives = 213/464 (45%), Gaps = 18/464 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPGSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG ++ AD   +     SE       +       +   +         +     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSEGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +        AIKA            R           +ID+SYNANP S+ AAI+VL+  
Sbjct: 291 AYAQQLSTDAIKAG--LESVVSVKGRLVEQKGYRGAIIIDDSYNANPLSVSAAIAVLA-- 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     +
Sbjct: 347 --KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEAGVKQLYCYGTLTKHTANAF--GKN 402

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 403 ARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|302871365|ref|YP_003840001.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574224|gb|ADL42015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 225/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V+  S++S++I+    F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKALNGELKNFSDDILVSSFSLNSKNISKNTLFIPLKGTRFDGHDFVEEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   + + +    I ++ +P   V D L AL  LA   R + K  T+I +TGSVGK
Sbjct: 59  LQNGAISFISHKE----IENVRVPYVKVKDTLAALQGLASYVRDKLKGLTVIGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   KT+   G+ NNHIG+P ++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSCKYKTFKNQGNLNNHIGLPFSILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPNIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++           +            +H   N L  
Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I +IL  D     +A+      + R       + +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAIGTILGIDRQLVKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTTNSTILFKASRGIKLDEIVDEFLKE 447


>gi|170756422|ref|YP_001781096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169121634|gb|ACA45470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 462

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 207/464 (44%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A+ G  +    +   N +S D+R I   + F A+KG +++G++F+  A++KGA 
Sbjct: 6   LEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAA 65

Query: 67  LVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+    +            V++   AL  LA   R +    ++AITGS GKT+TK++
Sbjct: 66  LCIVSEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDL 125

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+   K +   G++NN IG+PL + ++    D  + E+GM+H  EI  +    +P 
Sbjct: 126 VGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAEAAKPD 185

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +H+ N    E I  AK EI +   K   + +N DD      ++    +   
Sbjct: 186 IAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKFKV--- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             Y  G  K  DF        +E    ++  Q +        +  G H   N L  +   
Sbjct: 243 --YKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  +       +        R    +       FT+I++ YNA+P SMKAAI V+  I
Sbjct: 301 RVLDINYRDIQTGIKNLKATSMRLDIVKEKG----FTIINDCYNASPDSMKAAIDVMKNI 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                   IA+LG M E+G      H +++E      I  ++  G    A ++       
Sbjct: 357 KGKR---TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +       +    +I++ + DGD++++K+S +     ++  L 
Sbjct: 414 ENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELR 457


>gi|237729384|ref|ZP_04559865.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
 gi|226909113|gb|EEH95031.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Citrobacter sp. 30_2]
          Length = 452

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L + ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLAEILRGELKG--ADLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V+  +       ++P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  QESGAGALLVSRPL-----DTNLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRKVWR--FSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  +     L       GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATHEAIKAGLKDLQAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ +        I  V  +G    A+ DA   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGVAAKAAGIDRVLSTGKLSQAISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   +++ + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKSALAAHLKALIAEHQVMTILVKGSRSAAMEEVVRALQE 448


>gi|294852761|ref|ZP_06793434.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
 gi|294821350|gb|EFG38349.1| hypothetical protein BAZG_01693 [Brucella sp. NVSL 07-0026]
          Length = 481

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++A++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEAMEGRPFGNLPAG-VTGISIDSRTLKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +F ++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFDENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHLEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|85858522|ref|YP_460724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
 gi|85721613|gb|ABC76556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Syntrophus
           aciditrophicus SB]
          Length = 475

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 212/479 (44%), Gaps = 19/479 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P ++  +LL+A+ G  +       + G+S D+R +     +  +KG ++DGHDF+  AV
Sbjct: 6   TPQFSVDELLEAVGGTLLQGSTDSIIRGVSTDTRQLVAGNLYIPLKGANFDGHDFLDVAV 65

Query: 62  QKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +KGAG V+V+          S  +       VDD L AL  LA   R      +IAITGS
Sbjct: 66  KKGAGGVLVDVHHAFILETGSKKTDGCLKILVDDTLKALGDLARFWRRAVGRPVIAITGS 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTKEM    L          G+ NN IG+PLTL RM    D  + ELG +  GEI+
Sbjct: 126 SGKTTTKEMTAAILEQTFSVLKTEGNLNNLIGLPLTLLRMHRGHDLALVELGTNARGEIK 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P I ++T I PAHL     +E I   K +++  + K+G    N DD     L+
Sbjct: 186 RLTEIAEPDIGLVTNIGPAHLEGLKTLEIIREEKGDLYGTMPKSGLAVFNADDEAMAPLR 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     + ++G +  AD       +  E      +    +S  V     G H   N
Sbjct: 246 RSWQG----KMLTYGITSRADMTASDIAKWGESGQSFTLNAGSESTVVHLSAFGMHNIYN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +       ++   + L  FHP   R + +          L+D++YNANPAS++ 
Sbjct: 302 ALAAAALSRAAGIGINEISQGLRNFHPVAARFEVHFLPNGAF---LVDDTYNANPASVRE 358

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  +  +  +     + VL DM E+G+ ++  H  +    +  ++  ++L G    +  
Sbjct: 359 ALKTIQTLKGNHRS--VVVLADMLELGDQAERLHETVGSEAAATDVDRLFLKGSLSRSTA 416

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               +       + + E  + +   + S +  GD ++VK S       ++  +L+  PA
Sbjct: 417 AGAIKGGMTEERILFFEDPEEILDDVLSFVEAGDWILVKGSRLMKMEEIVKKILDRTPA 475


>gi|254704693|ref|ZP_05166521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brucella
           suis bv. 3 str. 686]
 gi|261755386|ref|ZP_05999095.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
 gi|261745139|gb|EEY33065.1| hypothetical protein BAFG_02819 [Brucella suis bv. 3 str. 686]
          Length = 481

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 222/472 (47%), Positives = 303/472 (64%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|312134657|ref|YP_004001995.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774708|gb|ADQ04195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 448

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 218/469 (46%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V+  S++S++++    F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKALNGEIKNFSDDILVSSFSLNSKNVSKNTLFIPLKGSRFDGHDFVEEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   +      ++ +P   V D L AL  LA   R + K  T+I +TGSVGK
Sbjct: 59  LQNGAISFISQKE----FKNVRVPYVKVKDTLVALQDLASYVRDKLKGLTVIGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   L+   KT+   G++NNHIG+P ++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLNYKYKTFKNQGNFNNHIGLPFSILNMPEDTQIAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+   G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMADDGMLIINNDNDILNLHKGEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I + G    + F+ +  ++           +  +         +H   N L  
Sbjct: 235 KK----RIITIGIENESHFRAKNVQRHQNGFS----FEVDNYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  IL  D     +A+      + R +  +        T+ID++YNA+  SM +AI  
Sbjct: 287 IAVGIILGIDRQLIKEAIRRKERLKRRFEIIQKGS----ITVIDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLEREVTSNSTILFKASRGIKLDEIVDEFLKE 447


>gi|238854500|ref|ZP_04644838.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|260664816|ref|ZP_05865667.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|282934106|ref|ZP_06339385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|313472628|ref|ZP_07813117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|238832853|gb|EEQ25152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 269-3]
 gi|239529419|gb|EEQ68420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus jensenii 1153]
 gi|260561299|gb|EEX27272.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii SJ-7A-US]
 gi|281301853|gb|EFA94118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
          Length = 455

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +I       ++ ++ DSR +     F  +KG   DGHDFI  A+  GA 
Sbjct: 5   LAEIAKALD-TTIEGNSDPVISSVAFDSRKLNENSLFVPLKGER-DGHDFINSAIANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +         G  + P+  VDD L A+ +LA     +    ++ ITGS GKTTTK+M+
Sbjct: 63  ATLWEKGHPNKPG--NFPLIEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV+P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+        K   +    
Sbjct: 181 CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKITQVKS-- 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG S        ++K     +           +     IG H   N +  + +    
Sbjct: 239 --TFGFSDQDTIHALEFKSYMHHAS--FVTNSSEQKFSIPMIGKHNVSNAMAAICVGHHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D    +LS F P   R +  +  + +    ++D+ YN+NP + KA ++   Q+   
Sbjct: 295 GESDDEIAASLSDFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVEVP 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G  S   H  LA+ L    I+ V+L G  +  L++A+     P +
Sbjct: 352 EGGRRIAVLGDMLELGAASAELHASLADKLDPLVINEVYLYGPEMKNLEEAIKGKYVPDT 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K+S+     +++  LL
Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455


>gi|91200082|emb|CAJ73125.1| similar to UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 484

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 145/483 (30%), Positives = 213/483 (44%), Gaps = 24/483 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + +  +++QA+ G +I  V    VNG+S+DSR++     FFAIKG HYDG  FI  A
Sbjct: 3   MDAI-SLEEVIQAVNGKAISNVSGLMVNGVSVDSRNVHKGNVFFAIKGDHYDGRQFIEQA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  VVV+      I    +P+  VDDV  AL  LA   R +  A II ITGS GKT
Sbjct: 62  FDAGAIGVVVSKQGGIDISGKCLPLILVDDVKTALGDLARHYRRKLNAKIIGITGSNGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS          S+NN IGVPLT+  +     +GI E+G +  GEI  L+ 
Sbjct: 122 TTKEMLYHLLSHFAPVVKPQKSFNNFIGVPLTIFEIESKHKYGILEMGTNAPGEILRLSE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVI  I+  HL     IE +A  K +I + L++ G    N D+     +  K  
Sbjct: 182 IGLPDIAVILNISKTHLEGLGSIEGVALEKGDILKNLKENGVFVYNADNPLCCEIADKFG 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    SFG  +NA  +    K+    S     +          G+     +   + L
Sbjct: 242 GNKI----SFGLGQNAQIRGTDAKKKGNGSV--FTIDIDYNTFRLCGVKGGGRRQFEIQL 295

Query: 301 GIVSILTADVDTAIKALSVFHPK-----------EGRGKRYRCALNQGFFTLIDESYNAN 349
            +          A  A+                          +   G  T I+++YNAN
Sbjct: 296 QVPGHHNISNCLASFAVCHALGLDISGLYNAFLSFKMPDMRIDSQQIGNVTFINDAYNAN 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P S+ AA+    +I     GR+I + GDM E+G+ S + H +L E  S  N+  +W  G 
Sbjct: 356 PESVFAALKYFEEIDA--AGRKIFICGDMLELGKESHALHKELGEKASTLNLDLLWTVGK 413

Query: 410 HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  A          V    ++D +  +      + DV+++K S       +I+   
Sbjct: 414 YASDIAGAAKDGGMDVEKVLSFRSLDDITEYDMGEFRENDVILIKGSRGMHMETIIDKYR 473

Query: 466 EEF 468
           E F
Sbjct: 474 EYF 476


>gi|303240797|ref|ZP_07327310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302591685|gb|EFL61420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 457

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 222/468 (47%), Gaps = 20/468 (4%)

Query: 4   LWTFH--DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    ++++A+ G  I        + ++ DSR +   + F  + G  +DGHD+I+ + 
Sbjct: 1   METLKCKEIVKAVNGVLISGDLNTEFSNVTTDSRQVRKGDFFIPLVGEKFDGHDYIITSF 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++G    +   D     G +   V  V+D L AL  L+   R +     + ITGSVGKT+
Sbjct: 61  EQGVSGCLTQKDTAGYEGKV---VIKVEDTLSALRMLSSYYRKKFDIPFVGITGSVGKTS 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M++  L+         G++NN IGVPLT+  +    +  + E+GMS  GEI  LT +
Sbjct: 118 TKDMVSSVLNKKFNVLKTQGNFNNEIGVPLTVFNLESTHEAAVVEMGMSGFGEISRLTSI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P IA+IT I  +H+      + I  AK EIFEGL+  G + LN DD+    LK     
Sbjct: 178 VKPDIAIITNIGLSHIEKLGSRQNILKAKMEIFEGLKSQGLVILNGDDNLLFGLK----N 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L       +G     D+Q        E  +  E+ +  ++ +V     G H   N L  +
Sbjct: 234 LLNYRTVFYGMEDGLDYQAYNISSQGEQGTSFEITIGNENYKVHVPVPGIHNIHNALAAI 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   V   I+ +  F P    GK     ++     +I+++YNA+P SM+AAI+VL
Sbjct: 294 AAGIELNIPVKDIIEGIGEFSP----GKMRLNIMDHNGIKIINDAYNASPQSMEAAINVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
             I+  G+ R IAVLGDM E+G+++   H+ + +      +S++   G +   + +    
Sbjct: 350 KDIA--GDNRTIAVLGDMLELGDIAVKAHMGVGKFAFSKEVSYIVAVGENGKNIAEGALK 407

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  V + +       F+      GDV+VVK S       ++NLL
Sbjct: 408 AGAEEARVFHFKDNSEAGKFLLDFTKPGDVLVVKGSRGMKMEEIVNLL 455


>gi|255283498|ref|ZP_05348053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255265955|gb|EET59160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 455

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 213/472 (45%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++  A  G  +G        V  I  DSR       F AI G H DGH FI 
Sbjct: 1   MKNL-TLENIAGACGGAYVGSDADRSREVADIVTDSRRAKEGSLFAAICGEHVDGHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
               +GA  V+       + G    P   V+  L AL  +A   R +    ++ ITGSVG
Sbjct: 60  QVYAQGALCVLCEKAPAEAQG----PYILVESTLKALMAIAEFYRQQLDIKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   LS   +     G++NN +G+PLT+ ++  + +  + E+G++H GE+  L
Sbjct: 116 KTSTKEMIASVLSEKYRVLKTPGNFNNELGLPLTVFQLTEEDEVAVLEMGINHFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + RP + VIT I   HL      + +  AK+EIF+ +   G I LN DD     LK  
Sbjct: 176 SKIARPDVCVITNIGTCHLEFLGDRDGVLRAKSEIFDFIAPDGQIVLNGDDDKLSALKE- 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +   T   FG       +    +    +     +    +S  V     GYHM  N L
Sbjct: 235 ---VRGITPQFFGIEHACAIRATDIENAGLKGVKCRIHDGTESFAVTIPIPGYHMVLNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   ++   + +       GR +           T++D+ YNANP SMKA++
Sbjct: 292 AATAVGRALGMSLEEIRRGIEKLQALGGRFRILEAGG----ITVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR+IAVLGDM E+GE  Q  H ++    +  +I   +  G     + + 
Sbjct: 348 GVLADAP----GRKIAVLGDMGELGENEQQLHGEVGRFAAGLDIPVFFCVGALCRYMAEE 403

Query: 418 ---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              L     V  +++++ +   +  S+  GD V+VK+S++  F +++  L +
Sbjct: 404 IRRLSPEKQVITADSVEEVLRLLPDSVQKGDTVLVKASHAMHFEKIVEALTK 455


>gi|304392260|ref|ZP_07374202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
 gi|303296489|gb|EFL90847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
            [Ahrensia sp. R2A130]
          Length = 1015

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 191/468 (40%), Positives = 278/468 (59%), Gaps = 2/468 (0%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            PLWT   + +A +G       +  + G+SID+RS+ P +A+FAI+G  +DGH F+  A  
Sbjct: 542  PLWTLDAMGEATKGWLPDGDTEIAITGLSIDTRSLQPGDAYFAIRGDVHDGHKFVAAAHA 601

Query: 63   KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             GA + VV  D V  +      +  VDDVL AL +L +AAR R+ A ++AITGSVGKTTT
Sbjct: 602  AGATVSVVAKDWVGRLEGDCGRLLVVDDVLHALVRLGLAARARTSAQVVAITGSVGKTTT 661

Query: 123  KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            KEML   L++    +A + S+NNH GVPLTLARMP D DF + E+GM+H GEI  L  + 
Sbjct: 662  KEMLRTGLAACGHVHAAVASFNNHWGVPLTLARMPADSDFAVIEIGMNHPGEITPLVQMT 721

Query: 183  RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            RPH+A+I  +A  HL  F  ++EIA AK+EIF+GL   GT  LN DD    ++  ++   
Sbjct: 722  RPHVAIINNVAAVHLGAFDSVDEIAHAKSEIFDGLIPGGTAVLNADDERLPIMLDRATEA 781

Query: 243  GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +     FG++ +AD +L K       S +   + G+ + +     G H+AQN L+ L +
Sbjct: 782  EVANTVLFGEAPDADVRLEKLNLMDHASTLSANVMGEPVMLKVGAPGRHIAQNALVVLAV 841

Query: 303  VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  AD+     AL+     +GRG++++ ++ QG   LIDESYNANP SM A++ +L  
Sbjct: 842  AKLFDADLAKVSLALAEMEAVKGRGQQHKLSVGQGAAVLIDESYNANPTSMAASLDLLGS 901

Query: 363  ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--R 420
              P   GRRIAVLGDM E+G  S   H D+A+ +S   IS V+L+G  + AL+D L   +
Sbjct: 902  REPAPGGRRIAVLGDMLELGATSAQLHADIADPISDNRISRVFLAGSDMRALRDTLMNTK 961

Query: 421  SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +HV + +T D +   +   +  GDVV+VK+S    F ++IN LLE +
Sbjct: 962  GVHVTWCDTADEIGAILADEIRSGDVVMVKASLGMAFAKVINHLLERY 1009



 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 161/477 (33%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              +DLL    G              +  +++DSR + P   F A+ G   DG  F+  A
Sbjct: 1   MRLNDLL---GGGLPEASRDDVGALDITNVTVDSRKVKPGGLFIAVSGSAQDGAKFVPMA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  V+ + D  A IG +S+PV    ++  AL  +A     R    I A+TG+ GKT
Sbjct: 58  VENGAVAVLADRD--ADIGKISVPVLRNGNIRKALANIASRFHPRQPEIIAAVTGTAGKT 115

Query: 121 TTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLARMPVDVDFGI-----F 165
           +    L                    +A   S    +  P  +    +  +         
Sbjct: 116 SVASFLRQIWGHKDDAVPAMIGTTGVFAPGRSDYGSLTTPDPVKLHELLDELAGEGVTHC 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  S  G  +     VR  +A  T +   HL   + IEE  +AK  +F  L K G   +
Sbjct: 176 AMEASSHGLDQMRLDGVRLAVAGFTNLGRDHLDYHADIEEYLTAKLRLFGDLLKPGQPAV 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            Y D  F              + + G+       +++ +Q       EV   G++  V  
Sbjct: 236 IYADDEFSGRVIDHAEFHGLDVKTVGREGEF-IAVKRIEQHRTSQVAEVVCDGETYRVEL 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L+  G+      +   A  AL+      GR +             +D +
Sbjct: 295 PLAGEFQLANALVAAGMAIASGMEAKAAFIALTTLEGASGRLELIGKTTEGAAC-YVDYA 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +           +VL+ + P+  G+ + V G     G         +   ++      V 
Sbjct: 354 HKPEALE-----NVLAALRPYTTGQLVLVFG----CGGDRDPGKRAIMGEIAARMADRVI 404

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +           A+ +A P +  +          +     L  GD ++V  K 
Sbjct: 405 VTDDNPRSENPGSIRAAIMEAAPDATEI---GDRYEAIINAVEGLGSGDTLIVAGKG 458


>gi|258645239|ref|ZP_05732708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
 gi|260402589|gb|EEW96136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister invisus DSM 15470]
          Length = 459

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 13/461 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++L+A+ G  +      +  G++ D+R+I+P E F A++G  +DGH F+  A   G
Sbjct: 4   FTLGEILKAVSGVLLQQGSHEYCTGVNTDTRTISPGELFIALQGNTFDGHHFLNDACING 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +V+++          ++ V  V +   AL  LA   R++    ++A+TGS GKTTTK 
Sbjct: 64  ASMVIISERSSFKAVPRTVSVILVKNTQTALEALAHFYRMKFDIPVVAVTGSNGKTTTKN 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   ++S     A   ++NN IG+ LTL  M  + +  + E+GM  LG+I  L  +  P
Sbjct: 124 MIAALVASKLNVCATQKNFNNEIGLSLTLLSMTPETEACVVEMGMRGLGQIAELCRIAAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+T +  +H+      E IA AK E+ E L   G   LN DD +   +         
Sbjct: 184 TIGVVTNVGTSHIGILGSQENIAKAKGELIESLPDKGIAILNEDDPYVIRMGDTF----S 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I  +G + N      + +  +  +        ++ +V  + +G H   N L       
Sbjct: 240 GNIIGYGVNGNYTVHGSRIQYENNCTKYVCTCFDEAFKVKLNMLGIHNVYNALAATATAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  DV+   KALS F P   R             T+ID+SYNANP SM+ A      + 
Sbjct: 300 VLGIDVNRIQKALSEFLPGAQRQFFTEING----VTVIDDSYNANPLSMEMAFHA---MR 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    VLGDM E+GE  + FH +L ++ +      +   G     +      +   
Sbjct: 353 QVNGKHYFLVLGDMGELGEKEEQFHYELGKIAANIGFDGMITVGKLSRHIAMGARDAGKT 412

Query: 425 HY--SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +     T +  +  +Q  +  GDVV+VK S       ++ L
Sbjct: 413 NIMECTTCEDAWQRLQKMIQSGDVVLVKGSRYMHMETILEL 453


>gi|57650755|ref|YP_186889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|88195983|ref|YP_500796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151222198|ref|YP_001333020.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|57284941|gb|AAW37035.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87203541|gb|ABD31351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374998|dbj|BAF68258.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|329724055|gb|EGG60579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 452

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|312794107|ref|YP_004027030.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181247|gb|ADQ41417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 448

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 221/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDFI  A
Sbjct: 1   MN-LW-LSEIAKAINGELRSFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   D       L +P   V+D L AL  LA   R +     ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKD----FDDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++           +            +H   N L  
Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A+      + R       + +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILGVDRELIKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + 
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAFYIFDEVK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      Y  T D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGTKAYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|217967637|ref|YP_002353143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336736|gb|ACK42529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 459

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 235/470 (50%), Gaps = 15/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  D+L+A  G  I    +  V+ IS D+R+I   E F A+KG  +DGHDF+  A
Sbjct: 1   MKLDLTVEDILEATNGVLIKGDIREKVDSISTDTRNINEDEVFIALKGEKFDGHDFVKDA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KG   ++++ ++       +I V  V D L AL  +A   R + K  +I +TGS GKT
Sbjct: 61  ILKGVKGIIISREIAVE---GNIFVIRVQDTLKALQDIANYYRRKLKTKVIGVTGSSGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK ++   LS + KTY    ++NN IGVPL++     DVDF + E+ M + GEI  L+ 
Sbjct: 118 TTKNLIGKLLSIVGKTYVSRENFNNEIGVPLSILDAEEDVDFLVLEMAMRNKGEISLLSK 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I VIT I  AH+      E I  AKAEIFE +++ G   LN DD F   +  K  
Sbjct: 178 IAEPDIGVITNIGWAHIGRLGSREAIMEAKAEIFEHIKQDGVAILNNDDPFSMRIYEKLK 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMT 299
                  Y+FG  + +D +    ++  E   +++     K +++       ++ +N+L++
Sbjct: 238 IKK----YTFGFDERSDLRGEIVEKNEENYLLKINFPDGKDIKLSLPIYPLNIYRNLLLS 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++ +++ +   +++    F   + R    R         +ID++YNANP SM+ AI  
Sbjct: 294 LLVLWVISPESVYSLEKDFYFDLPKQRLNLKRKENG---LVIIDDTYNANPDSMRTAIEY 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR+I +LGDM E+G+ S   H ++ E +   NI      G  +    D   
Sbjct: 351 LDLLKSS--GRKIVLLGDMLELGDHSIDGHREVIEEVFKRNIDMAIFYGPEMRKALDTYQ 408

Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +++S+  + +   +++SL  GD ++VK S +      +  L +E
Sbjct: 409 NLDKKRIYWSKDPEEIKSILKNSLCAGDTILVKGSRAMYMENFVKFLEDE 458


>gi|253733084|ref|ZP_04867249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728992|gb|EES97721.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 452

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLTQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTIYQNLKK---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|258453207|ref|ZP_05701198.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
 gi|257859153|gb|EEV82010.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Staphylococcus aureus
           A5948]
          Length = 452

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTVLELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLIYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|253731081|ref|ZP_04865246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253725208|gb|EES93937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 452

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|87162126|ref|YP_494684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|161510294|ref|YP_001575953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221141603|ref|ZP_03566096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|262049251|ref|ZP_06022126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|262052495|ref|ZP_06024693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|282923071|ref|ZP_06330756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|284025117|ref|ZP_06379515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294850567|ref|ZP_06791294.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|304379263|ref|ZP_07362002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|87128100|gb|ABD22614.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|160369103|gb|ABX30074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|259159616|gb|EEW44662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus 930918-3]
 gi|259162616|gb|EEW47183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus D30]
 gi|269941682|emb|CBI50089.1| putativeUDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593262|gb|EFB98259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A9765]
 gi|294822587|gb|EFG39029.1| hypothetical protein SKAG_02661 [Staphylococcus aureus A9754]
 gi|302751963|gb|ADL66140.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342122|gb|EFM08022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315196986|gb|EFU27328.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140747|gb|EFW32599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143722|gb|EFW35499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314767|gb|AEB89180.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 452

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLIYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLINDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|282917431|ref|ZP_06325184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|282318633|gb|EFB48990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus D139]
          Length = 452

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S PV  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D ++VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRILVKGSRGMKLEEVVNALI 451


>gi|212712753|ref|ZP_03320881.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
 gi|212684669|gb|EEB44197.1| hypothetical protein PROVALCAL_03850 [Providencia alcalifaciens DSM
           30120]
          Length = 452

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 212/472 (44%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T + L Q  QG  +        +  +S DSR I     F A+KG  +D H+F   
Sbjct: 1   MIPI-TLNQLAQVTQGRIVNATNHDLTLLNVSTDSRKIEASCLFIALKGERFDAHEFAGQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V+ GA  ++V+  +      ++ P   V+D   A+ ++A   R +SKA ++ +TGS GK
Sbjct: 60  VVEAGATALLVDHQL-----DVNCPQVIVEDTRIAMGQVAGWVRQQSKARVVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    L     T    G+ NN IGVPLTL R+  +  F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILGQRGNTLYTAGNLNNDIGVPLTLFRLTDEYQFAVIEMGANHPHEIEYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P  A++  +  AHL+ F   E +A AK EI++GL + GT  +       +    K 
Sbjct: 175 NIVKPETALVNNLFGAHLAGFGSPEGVAKAKGEIYQGLPEEGTAIV-----NLDSYSDKW 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +T++ +  ++ ADF     +     +   +      +E+     G H   N+L  
Sbjct: 230 QFGSRQTVWYYSLTETADFYPSNIQIKQLTTDFTLHTPVGQVEITLPLPGVHNIANVLAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A ++   + ++      GR    R +       ++D++YNAN  SM AAI+V
Sbjct: 290 SALAISVGATLEDIKQGIATTKAVPGRLFPVRLSDT---KVVLDDTYNANDGSMIAAINV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++     G RI V GDM E+G+ +   H  +        +  V   G     +     
Sbjct: 347 LAKMP----GYRILVAGDMGELGDYAHECHERVGLAAKQAGLDKVLSVGQLSEIISQ--- 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFP 469
            S    +      L   +       DVV  +VK S S     ++N L E F 
Sbjct: 400 SSERGEHFTVKQDLLTRLIPLAQQNDVVSILVKGSRSSAMEDVVNALKECFE 451


>gi|82751684|ref|YP_417425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
 gi|82657215|emb|CAI81655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus RF122]
          Length = 452

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCKIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +   + L         G R      +   T+I+++YNA+P SM+AAI  L+ ++ 
Sbjct: 298 LGLTYNRIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLNTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|182418019|ref|ZP_02949325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237668908|ref|ZP_04528892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378190|gb|EDT75725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum 5521]
 gi|237657256|gb|EEP54812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 454

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 212/464 (45%), Gaps = 13/464 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A+ G  I     G  N IS D+R I     F A+KG +++G+ + + A++KG
Sbjct: 3   LNIQEVIEAVNGEIIVKNNDGHFNKISTDTRKIENDNLFVALKGANFNGNTYAVSAIEKG 62

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +V+V+              V  V D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 63  ASVVIVDEIKFEKEDLKSKGTVIKVKDTKVALGDLARYYRKKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   K +   G++NN IG+PL +  +  D D  + E+G S+ GEI  L  +  
Sbjct: 123 DLIAAFLSGKYKVFKTQGNFNNEIGLPLMIFELNKDYDVAVLEMGTSNFGEINTLAGIAL 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA IT +  AH+      E I   K  I +  +    + +N ++   + +K + H   
Sbjct: 183 PDIAAITNVGVAHIEYLKTRENILKEKMSISDFFKDDSCLVINCENDMLKTVKDEDH--K 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I   G  K+ +   +  +  SE +  +   + +      + +G H   N L+ + I 
Sbjct: 241 NINIQRTGYDKSYNLYAKNIELTSETTSFDAVYKDECHRFNLNMVGEHNVLNALLGIQIS 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L  F     R +  +       FT+I++SYNANP SM    + ++ +
Sbjct: 301 KDLGLKFEEMEKGLDNFKATSMRLEFIK----HNKFTIINDSYNANPDSM---KAAINVL 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +   R+IAVLG M E+G+ +   H ++ E         +  +G +  + K+      +
Sbjct: 354 KSYTGDRKIAVLGTMGELGDYANIAHKEVGEFA-KGKADILLTTGEYKDSYKEGF--GTN 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +T D L   + S + D D ++VK+S S  F  +I  +  +
Sbjct: 411 TLVFDTKDDLIKSLNSMIKDEDTILVKASRSAKFEEIIKEIQNK 454


>gi|260566060|ref|ZP_05836530.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
 gi|260155578|gb|EEW90658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella suis bv. 4 str. 40]
          Length = 481

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V PH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VCPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSGKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  GDVV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGDVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|83748762|ref|ZP_00945777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|207744405|ref|YP_002260797.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
 gi|83724583|gb|EAP71746.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum UW551]
 gi|206595810|emb|CAQ62737.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum IPO1609]
          Length = 482

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 196/470 (41%), Gaps = 14/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSAADAAVWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A +    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+I      H      +E +A+  A +   L   G      D +          
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A                         ++   ++VQ  G         +G H A+N L   
Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAAT 305

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +   +ALS F P +GR    +         ++D++YNANP S++AAI  L
Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDAL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +       R  VLGDM E+G    +FH ++        I  V  +G     + DA   
Sbjct: 363 ATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGG 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|207721508|ref|YP_002251948.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
 gi|206586668|emb|CAQ17254.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum MolK2]
          Length = 482

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 196/470 (41%), Gaps = 14/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   V  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSAADAAVWMAGAHLAG-PDAAVRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A +    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAMLDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+I      H      +E +A+  A +   L   G      D +          
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVATEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A                         ++   ++VQ  G         +G H A+N L   
Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVQAPGLRFSFTLPLLGVHNARNALAAT 305

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +   +ALS F P +GR    +         ++D++YNANP S++AAI  L
Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVVDDTYNANPDSVRAAIDAL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +       R  VLGDM E+G    +FH ++        I  V  +G     + DA   
Sbjct: 363 ATLPA----PRWLVLGDMGEVGTQGPAFHQEIGAYARDRGIDAVLATGELARHVVDAFGG 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|298695356|gb|ADI98578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ED133]
          Length = 452

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFINQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + + L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTNDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|312128119|ref|YP_003992993.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778138|gb|ADQ07624.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 448

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 220/469 (46%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +AI G          V   SI+S++I     F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAINGELRNFSSDVLVKNFSINSKNIGKDTLFIPLKGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   D       + +P   V D L AL  LA  AR +     ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKD----FEDIKVPYIKVQDSLLALQSLACYARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSRKYKAFKNQGNFNNHIGLPISILNMPDDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I +IT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGIITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINSDNDILNLHKKEL 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++           +            +H   N L  
Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D     +A+      + R       + +G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEVDRQLVKEAIRQKERLKRRF----EVIKKGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     EG++I VLGDM E+GE S+  H  +   +    I  V  +G   + + D   
Sbjct: 343 ICEF----EGKKILVLGDMLELGEFSEEEHRKVGRYILQKPIDVVICTGKDAIYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKEGSRAYFVSKDECLDVLKREVTSNSTILFKASRGVKLDEVVDEFLKE 447


>gi|15925072|ref|NP_372606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927657|ref|NP_375190.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148268534|ref|YP_001247477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394598|ref|YP_001317273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156980398|ref|YP_001442657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316241|ref|ZP_04839454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|255006871|ref|ZP_05145472.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793841|ref|ZP_05642820.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|258407009|ref|ZP_05680159.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|258433600|ref|ZP_05688673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|258440495|ref|ZP_05690665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|258445703|ref|ZP_05693881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|258450157|ref|ZP_05698252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|258453388|ref|ZP_05701370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|269203718|ref|YP_003282987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282895276|ref|ZP_06303489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|282929554|ref|ZP_06336951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|295407013|ref|ZP_06816815.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|296275712|ref|ZP_06858219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297246744|ref|ZP_06930561.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|13701877|dbj|BAB43169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247855|dbj|BAB58244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741603|gb|ABQ49901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947050|gb|ABR52986.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156722533|dbj|BAF78950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787813|gb|EEV26153.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9781]
 gi|257841342|gb|EEV65786.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9763]
 gi|257849331|gb|EEV73310.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9299]
 gi|257852564|gb|EEV76482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A8115]
 gi|257855542|gb|EEV78479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6300]
 gi|257856631|gb|EEV79537.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A6224]
 gi|257864369|gb|EEV87115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A5937]
 gi|262076008|gb|ACY11981.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282589033|gb|EFB94137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A10102]
 gi|282762349|gb|EFC02496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus A8117]
 gi|285817747|gb|ADC38234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Staphylococcus aureus 04-02981]
 gi|294968038|gb|EFG44065.1| hypothetical protein SMAG_02188 [Staphylococcus aureus A8819]
 gi|297176404|gb|EFH35676.1| hypothetical protein SLAG_02796 [Staphylococcus aureus A8796]
 gi|312830434|emb|CBX35276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128753|gb|EFT84753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329726378|gb|EGG62846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729340|gb|EGG65748.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 452

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|323442420|gb|EGB00049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O46]
          Length = 452

 Score =  270 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +    +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNGTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|21283734|ref|NP_646822.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486875|ref|YP_044096.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297210099|ref|ZP_06926492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300910461|ref|ZP_07127913.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205176|dbj|BAB95870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245318|emb|CAG43793.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296885299|gb|EFH24239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300888303|gb|EFK83494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 452

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 135/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQVINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|258422917|ref|ZP_05685817.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
 gi|257846941|gb|EEV70955.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9635]
          Length = 452

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 138/461 (29%), Positives = 217/461 (47%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSRSI+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRSISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQKGTSID-ENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDDDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK   + +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEP---LLKPHVNEVENA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 241 KCISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + ++  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHISVGNYLEEKHIDVLYTFGNEAKYIYESGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|258422030|ref|ZP_05684947.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
 gi|257841930|gb|EEV66362.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           A9719]
          Length = 452

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQGGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  L  ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLGTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|222528780|ref|YP_002572662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455627|gb|ACM59889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 448

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 223/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V   SI+S+SI     F  ++G  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAVNGELKNFSTDVLVKNFSINSKSIGKDTLFIPLRGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   D       L +P   V D L AL  LA  AR +     ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKD----FDDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QITKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++           +  +         +H   N L  
Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQKHQNGFS----FEVDNYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A+      + R       +N+G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEIDRELIKEAIRQKERLKRRF----EVINKGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   V  Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447


>gi|223043927|ref|ZP_03613968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
 gi|222442642|gb|EEE48746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           capitis SK14]
          Length = 451

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 207/461 (44%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLEQIKHWIPCEIDEQYLSHSINGVTIDSRKIEKDMLFIPFKGENVDGHRFVAQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G              +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFSEK-GTELSEDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ + +P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL++ GT   + D+   +    +   L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEPLLKPHLEQ---LNKA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G   +           +E     +  +          +G H  +N  + + I   
Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTINDK---ESFTLPILGTHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T    ++     +  G R          T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLSYETIKDNINH---VKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
             EGR+I +L D+ E+GE SQS H ++   L+   I  ++  G     + +     +   
Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVGAYLNNKAIDVLYTYGDEARFIFNIGQNEVPTA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +    L   ++  + + D ++VK S       ++  L+
Sbjct: 411 QHFDDKSELIKELKIIVKENDKILVKGSRGMKLEEVVEALI 451


>gi|268591759|ref|ZP_06125980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
 gi|291312720|gb|EFE53173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rettgeri DSM 1131]
          Length = 454

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 137/472 (29%), Positives = 209/472 (44%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T   L Q  QG           ++ +S DSR IA    F A+KG  +D HDF   
Sbjct: 1   MISL-TLAQLAQITQGQIESAPDTNVLISSVSTDSRKIAENCLFIALKGERFDAHDFAQQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  GA  ++V   +     ++  P   V D   A+ +LA   R +S+A I+ +TGS GK
Sbjct: 60  VVVTGAKALLVERKL-----NVDCPQVIVKDSRIAMGQLAAWVRQQSRARIVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    LS   KT    G+ NN IGVPLTL R+  D +F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILSERGKTLYTAGNLNNDIGVPLTLFRLTNDDEFAVIEMGANHPNEIAYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P  A++  +  AHL+ F   E +A+AK EI++G+ + GT  +N D       K + 
Sbjct: 175 NIVKPEAALVNNLFAAHLAGFGSPEGVATAKGEIYQGVPEEGTAIVNLDSYSE---KWQF 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   YS      ADF     +     +   +     S+++     G H   N+L  
Sbjct: 232 QPRQTVWYYSLTSQAKADFYPSDIQVKQLTTDFVLHTPVGSVDITLPLPGRHNIANVLAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A ++     ++      GR    R +       ++D++YNAN  SM AAI V
Sbjct: 292 SALAISVGASLEDIKNGIAKTQAVPGRLYPVRLS---EHKVVLDDTYNANDGSMIAAIQV 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L ++     G RI V+GDM E+G+ ++  H  +        +  V+  G     +     
Sbjct: 349 LEKMP----GYRILVVGDMGELGDYAEDCHQRVGVAAKQAGLDKVFSVGQLSELISQFSE 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEFP 469
              H         L   +       DVV  +VK S S     ++N L E F 
Sbjct: 405 CGEHFTV---KADLLTRLIPLAQQKDVVSILVKGSRSSAMEDVVNALKECFE 453


>gi|153207126|ref|ZP_01945905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212219394|ref|YP_002306181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
 gi|120576787|gb|EAX33411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212013656|gb|ACJ21036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 446

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 145/465 (31%), Positives = 221/465 (47%), Gaps = 20/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  + +     G         +S D+R+I P   F A++GP++D +DFI  A ++
Sbjct: 1   MMKLSEAAKIVNADLTG--EDTVFENVSTDTRTIQPDSLFIALRGPNFDANDFIAKAEEQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN      +   ++P+  V D L AL +LA   R +     I +TGS GKTTT+
Sbjct: 59  GAVGAVVNR-----VVKTTLPLICVSDTLEALGRLARYQREQIPIPAIVVTGSCGKTTTR 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L           A   S+NN+IGVPLTL R+  D  + + ELG +H GEI +LT L +
Sbjct: 114 ALLASVFRQCGNVLASEKSFNNNIGVPLTLLRLRPDHHYALLELGANHPGEITYLTGLAK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT   P HL  F  +E +A AK EIFEGL   GT  +N DD F E  +  +H+  
Sbjct: 174 PSVAIITNAGPVHLEGFGSLEGVAKAKGEIFEGLSSDGTAVINNDDHFAEFWRRLAHSR- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I SFG ++ AD   +     S+     ++ L    +E+    IG H   N L     
Sbjct: 233 --RIISFGINQPADVMAKNITLNSDGRPAFQLVLPTGQLEIQLPLIGVHNVANALAAAAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     L    P +GR    +         +ID+SYNANP S+ AAI+VL+ 
Sbjct: 291 AYAQQLSTDAIKAGLESVVPVKGRLVEQK---GYRGAIIIDDSYNANPLSVSAAIAVLA- 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G  + VLGDM E+G+ ++ FH ++ +      +  ++  G       +A     
Sbjct: 347 ---KRPGHSVLVLGDMLELGQGAEQFHQEIGKRAFEGGVKQLYCYGTLTKHTANAF--GK 401

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +  + L   +++ L    VV+VK S S     + + LLEE
Sbjct: 402 NARHFDNQEKLLTALKNDLNANAVVLVKGSLSMRMGNIAHALLEE 446


>gi|302874627|ref|YP_003843260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302577484|gb|ADL51496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 459

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 211/461 (45%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+      V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L  
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-- 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S    KN D +        +      + +    +      G H   N L+ +    
Sbjct: 243 -IKASISDDKNIDLKGESLVLKEDS----CEFKLNESKFYIPMPGKHNISNALLAIACAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +     K          R    +        T+I+++YNA+P SMKAAI V+  + 
Sbjct: 298 ELGVEDQLINKGFLNIEATSMRLDIEKNKG----ITIINDTYNASPDSMKAAIEVMKNLK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 RIAV+G M E+GE S  +H ++       ++  +   G    A  +        
Sbjct: 354 GKR---RIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGEFAKAYSEGFNNKNSS 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +G   ++ S + + D+++VK+S S  F  ++  L 
Sbjct: 411 IELAEKEGAIAYLTSEIREEDIILVKASRSMKFETIVEALK 451


>gi|167757613|ref|ZP_02429740.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|237735167|ref|ZP_04565648.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mollicutes bacterium D7]
 gi|167702610|gb|EDS17189.1| hypothetical protein CLORAM_03163 [Clostridium ramosum DSM 1402]
 gi|229381943|gb|EEO32034.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. D7]
          Length = 450

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 215/466 (46%), Gaps = 19/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +++ A  G  I       + G S DSR       +  I G  YDGHDFI  A   G
Sbjct: 1   MKVSEIVIATGGKLISGDETMEITGFSQDSRQAEVGMMYIPIIGERYDGHDFIESAFTNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++ +      I      V  VD+ L AL K+A   R   K  ++ ITGSVGKT+T++
Sbjct: 61  ASAIITDR----LIEDDKHVVILVDNTLKALQKMAHYLRKHRKVKVVGITGSVGKTSTRD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   +    KT    G+YNN+IG+PLT+ R+  D +  I E+GM+HL E+  L+ +  P
Sbjct: 117 MVYSVVKQQYKTLKTEGNYNNNIGLPLTILRL-KDEEVMILEMGMNHLNEMEELSRIACP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+ IT +  AH+      E I  AK EI  G+    T+ +N D+     ++        
Sbjct: 176 DISAITNVGTAHIGELGSRENILKAKLEIVAGMSDGSTLVINGDNDMLSTVR-----FDN 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G    A F+  K     + S   +   GK  +VV    G H   N L+ + I  
Sbjct: 231 FKVVKVGVDCAAVFKAEKVILMDDHSEFTINYNGKVYQVVVPVPGNHFVLNALVAIAIGI 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++  I+ +S F   + R        N    TLID +YNA+  SMK++I VL+  S
Sbjct: 291 NLEIPMEKCIQGISQFELTKKRMDVIELKNN---ITLIDGTYNASEDSMKSSIDVLATYS 347

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSI 422
                  IAVL DM E+GE S+  H  + + ++   I  +   G     + D  AL    
Sbjct: 348 RRK----IAVLADMLELGEFSEQLHRSVGKYVAEKQIDVLVAVGREAKFMSDSAALSGMA 403

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            ++Y      +  +++++L + DVV++K SN      ++  + E+F
Sbjct: 404 EIYYCNNNQEVVNYLKNNLQNDDVVLLKGSNGMKLKDVVTKIEEKF 449


>gi|311280934|ref|YP_003943165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
 gi|308750129|gb|ADO49881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Enterobacter
           cloacae SCF1]
          Length = 452

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 133/463 (28%), Positives = 211/463 (45%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +QG   G      V+ ++ D+R +     F A+KG  +D HDF+  A + GA
Sbjct: 5   TLSQLADVLQGELHG--SDLAVDAVTTDTRKVTAGCLFVALKGERFDAHDFVEQAKEGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +       S+P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKLA-----CSLPQIVVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L    KT    G+ NN IGVP+TL R+  + +F + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGQCGKTLYTAGNLNNDIGVPMTLLRLTREHEFAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G   LN D++ +   ++      + 
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPQDGIAILNADNNDWLNWQSVIGDRQVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  +  +DF     +  S  +   ++    S++V+    G H   N L    +   
Sbjct: 238 R--FSPNAAGSDFTASDIQVTSGGTAFTLRTPQGSIDVLLPLPGRHNIANALAAAALAMA 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A +D     L+      GR              L+D+SYNAN  SM AA  VLS +  
Sbjct: 296 VGAGLDAVKAGLAKLQAVPGRLF---PISLAQHKLLLDDSYNANVGSMTAAAQVLSDMP- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ S++ H  + E      I  V+  G     +  A   S    
Sbjct: 352 ---GYRVLVVGDMAELGDESEACHRQVGEAAKAAGIDRVFSVGRLSQLIGAA---SGVGE 405

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           +      L   +++++ +  +  ++VK S S     ++  L E
Sbjct: 406 HFADKAALIARLKTAIEEQQIITILVKGSRSAAMEEVVRALQE 448


>gi|300702958|ref|YP_003744560.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070621|emb|CBJ41916.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 482

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 197/470 (41%), Gaps = 14/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 8   MMSATDAAAWMAGAHLAG-PDAAIRRVTTDSRSVQPGDLFVALIGERFDAHDFLADVVAR 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A++    + V  V D   AL +LA   R +    ++A+TGS GKTT K
Sbjct: 67  GAAAVLVSRPPAAALDLSGVAVLTVADTRIALGQLAAGWRRQFPIPVVAVTGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 127 EMISAVFACAVGEDARLATAGNFNNDIGLPLTLFRLNARHKLAVLELGMNHPGETEVLAT 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+I      H      +E +A+  A +   L   G      D +          
Sbjct: 187 IAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLWR 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A                         ++   ++V   G     +   +G H A+N L   
Sbjct: 247 AAAGTRRV-LDFGIEGGAVSATVTDTADGQHVDVHAPGLRFSFMLPLLGVHNARNALAAT 305

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +   +ALS F P +GR    +         +ID++YNANP S++AAI  L
Sbjct: 306 ACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGVHGGLVIDDTYNANPDSVRAAIDAL 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +       R  VLGDM E+G    +FH ++        I  V  +G     + DA   
Sbjct: 363 ATLPA----PRWLVLGDMGEVGAQGPAFHQEIGAYARERGIDAVLATGELARHVVDAFGG 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 419 GAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|283835148|ref|ZP_06354889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069448|gb|EFE07557.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter youngae ATCC 29220]
          Length = 452

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L + ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLAEILRGELKGG--DLTLDAVTTDTRKVTPGCLFVALKGERFDAHDFADTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +        +P   V D   A  +LA   R +  A I+A+TGS GKT
Sbjct: 58  KDNGAGALLVSRAL-----DTDLPQLVVKDTRLAFGELAAWVRAQVPARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS   KT    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSRCGKTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   +    
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLSANGIAIMNADNNDWLNWQNIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRKVWR--FSPNAANSDFSATNVHVTSHGTEFSLQTPTGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  +     L       GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATPEAVKAGLKDLQAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKTAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   +++ + +  +  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALVAHLKALIAEHQIITILVKGSRSAAMEEVVRALQE 448


>gi|300715304|ref|YP_003740107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
 gi|299061140|emb|CAX58247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           billingiae Eb661]
          Length = 453

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 139/469 (29%), Positives = 219/469 (46%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L     G   G      V+ ++ D+R ++    F A++G  +D HDF+  A
Sbjct: 1   MITL-TLQKLADLTGGKLFGG--DLSVDQVTTDTRKVSAGCLFIALQGERFDAHDFVGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  ++  + +      D   AL +LA   R +S A ++A+TGS GKT
Sbjct: 58  MAAGASALLVSKHVTVAVPQVVVA-----DTRIALGQLAGWVRQQSTARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLNASHQYAVVELGANHQGEIAYTTE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP  A++  +A AHL  F  +  +A AK EIF+GL   GT  LN D + +   +   H
Sbjct: 173 ITRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFQGLPINGTAILNADSNDWPHWQHSLH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +   +S     ++DF     K  S  +   +     S+ +     G H   N L   
Sbjct: 233 SKTVWR-FSSAPQADSDFSATDVKVTSSGTHFVMITPAGSIAIQLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    K LS      GR      A N     L+D+SYNAN  SM AA  VL
Sbjct: 292 ALALSVDAPLSAIQKGLSHLQAVPGRLYPVALAEN---KLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G+ ++  H ++ E   L  I  V   G     + +A   
Sbjct: 349 SEMP----GYRVMVVGDMGELGDEAEECHREVGEAARLAGIDKVLSVGKMSHLISEA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S    + +    +   +Q+ L + DV  ++VK S S    +++  L E+
Sbjct: 402 SGAGEHLQDKAAVTARLQTLLAEHDVITILVKGSRSAAMEQVVQSLQEK 450


>gi|90423693|ref|YP_532063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105707|gb|ABD87744.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 479

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 197/467 (42%), Positives = 263/467 (56%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A++    G +P   + GISIDSR++ P +A+FAI+G  +DGH F+  A+ 
Sbjct: 5   PLWTASAMAEAMRATPSGALPDA-IFGISIDSRTLIPGDAYFAIRGEVHDGHAFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAGL VV             P+  VDDVL AL  L+ A+R R  A +IAITGSVGKT+T
Sbjct: 64  AGAGLAVVERAQRDKF-PADAPLLLVDDVLAALVDLSRASRARLGAKVIAITGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L     +  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI+ L  LV
Sbjct: 123 KEALRAVFGAQGETHASVASFNNHWGVPLSLARCPASAKFAVFEIGMNHPGEIQPLVALV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  F  +E IA AKAEIF GLE  G + LN D+  F  L+ ++ A 
Sbjct: 183 RPHVAIITTVEPVHLEFFDSVEAIADAKAEIFTGLEPNGAVVLNRDNPQFARLRKRAKAH 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  I SFG  + AD +L       E S +   + G+ +       G HMA N L  L  
Sbjct: 243 GISRIVSFGADEKADARLLDIALQPECSAVRAAVFGEDVTYKLGIPGRHMAINSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A   LS   P  GRG R+   +  G  TLIDESYNANPASM AAI+VL Q
Sbjct: 303 AELVGADLALAALTLSQVQPAAGRGVRHTLLVAHGEATLIDESYNANPASMAAAINVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL    
Sbjct: 363 AAVGPQGRRIAVLGDMLELGPRGPQLHRGLVEAIKANAIDTVFCCGPLMRQLWDALSTGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   + +++  GDV++VK S       ++  L   +P
Sbjct: 423 RGGYAEDAAALESQVIAAIRGGDVIMVKGSLGSRMKTIVTALERRYP 469


>gi|261345648|ref|ZP_05973292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
 gi|282566130|gb|EFB71665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Providencia rustigianii DSM 4541]
          Length = 454

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 139/471 (29%), Positives = 208/471 (44%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T   LLQ   G  I     +  +  +S DSR I     F A+KG  +D HDF   
Sbjct: 1   MIPV-TLSQLLQVTHGRVINEGNQELLLQNVSTDSRKIDESCLFIALKGERFDAHDFASQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  GA  ++V+  +      ++ P   VDD   A+ +LA   R +SKA ++ +TGS GK
Sbjct: 60  VVDAGAAALLVDHQL-----DINCPQIIVDDTRIAMGQLAAWVRQQSKAHVVGLTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM    L    KT    G+ NN IGVPLTL R+  D  F + E+G +H  EI + T
Sbjct: 115 TSVKEMTASILVQRGKTLYTAGNLNNDIGVPLTLFRLTHDHQFAVIEMGANHPHEIEYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++V+P   ++  +  AHL  F   E +A AK EI++GL   GT  +N D       K + 
Sbjct: 175 NIVKPEAVLVNNLFGAHLEGFGSPEGVAKAKGEIYQGLPDEGTAIVNLDSYSD---KWQF 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   YS  + ++ADF     +     +   +      +++     G H   N+L  
Sbjct: 232 KPRQTVWRYSLTQQEHADFYPSNIQVKQLTTDFTLHTPVGQVDITLPLPGMHNIANVLAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A ++   + L+      GR    R   N     +ID++YNAN  SM AAI+V
Sbjct: 292 SALSISVGATLEEISQGLASTKAVPGRLYPVRLGDN---KVVIDDTYNANDGSMIAAINV 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +     G RI V+GDM E+G  +   H  +        +  V   G     +  +  
Sbjct: 349 LATLP----GYRILVVGDMGELGHYAHDCHQRVGIAAKQAGLDKVLSVGQLSEIISQSSE 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468
              H         L   +       DVV  +VK S S     ++N L E F
Sbjct: 405 CGEHFTV---KQDLLTRLIPLTQQNDVVSILVKGSRSSAMEDVVNALKECF 452


>gi|84501750|ref|ZP_00999922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
 gi|84390371|gb|EAQ02930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           batsensis HTCC2597]
          Length = 476

 Score =  269 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 172/476 (36%), Positives = 242/476 (50%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +  +A  G + G        G+SID+R++   + F A+     DGH+F+  A
Sbjct: 1   MS-LWTAAEAARATGGEARG---DWTALGVSIDTRTLRAGDLFVALSAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   V        P+  V DVL  L  L  AAR R    I+A+TGSVGKT
Sbjct: 56  LEKGAAAALVSR--VPENVPADAPLLVVPDVLRGLEALGRAARARIGGQIVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   +   ++ +A   SYNNH GVPLTLARMP D + GI E+GM+H GEI  L  
Sbjct: 114 STKEMLRTVIGGQRRVHAAEASYNNHWGVPLTLARMPRDTEVGIIEIGMNHPGEIAPLAR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+  AHL  F  I+ IA  KA IF GL   G   +N D     +L+A + 
Sbjct: 174 LARPHVAMITTVGTAHLEAFDNIDGIAREKASIFNGLMPGGWAVINGDLDTTPILRAAAE 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G   + +FG++     +L K       +  E ++            G H A N L  L
Sbjct: 234 ATGAHIL-TFGEAPANHHRLTKVDIIDTATVAEARIWRAPALFKVAAAGRHFALNALGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMKAA 356
            +V  L  D   A   LS + P  GRG R R        +  F LID+++NANP SM AA
Sbjct: 293 AVVRALGLDRALACSDLSQWTPPAGRGMRERLLLDPVDEKMAFELIDDAFNANPVSMAAA 352

Query: 357 ISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V++   P      H  GRRIA+LG+M E+G    + H  LA++ +   +  V   G  
Sbjct: 353 LEVIAAARPKDNVGRHARGRRIAILGEMLELGPDELALHAGLADLPATAELDVVHCVGKR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL +ALP      ++E    L       +  GDVV+VK S       +++ L +
Sbjct: 413 MRALYEALPPGNRGRHTEKASDLAAKAARLVDAGDVVLVKGSKGSKVSEVVDALRK 468


>gi|313891516|ref|ZP_07825129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
 gi|313120093|gb|EFR43272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister microaerophilus UPII 345-E]
          Length = 460

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATNAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I+ L ++ +P
Sbjct: 124 MISALLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIKELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF + +         
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G + N      K    +  +        ++ +V    +G H   + L       
Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  DV    + LS F P        +  +      +ID++YNANP SM+ A+  L QIS
Sbjct: 300 ILGVDVTKIQRVLSDFSP----RAGRQSLIEINGIKIIDDAYNANPLSMEMALRSLKQIS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
              +     VL DM E+GE  + FH ++    +      +   G     +          
Sbjct: 356 AKNK---YLVLADMKELGENEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++  +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|283471298|emb|CAQ50509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 451

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 213/461 (46%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQK-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +          +G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNEHYD----LPILGKHNMKNATIAIAVGHE 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +   + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 297 LGLTYNIIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 353 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 410 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 450


>gi|322834424|ref|YP_004214451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
 gi|321169625|gb|ADW75324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rahnella sp.
           Y9602]
          Length = 453

 Score =  269 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 210/463 (45%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L  A+    IG      ++ ++ D+R I     F A+KG  +D HDF   AV+ G+
Sbjct: 5   SLQTLADALNAELIGT--DTQIDSVTTDTRQITEGCLFVALKGEKFDAHDFAADAVKAGS 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   AL +L    R +  A ++ +TGS GKT+ KEM
Sbjct: 63  GALLVSKRL-----PVDVPQLVVADTRIALGQLGGWVRQQVPARVVGLTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + DF + E+G +H GEI + T L RP 
Sbjct: 118 TAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIEMGANHAGEIAYTTALARPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  ++ AHL  F  +  +A AK EIF+GL + G   +N D++ +   + K +   + 
Sbjct: 178 TALVNNLSAAHLEGFGSLAGVARAKGEIFDGLPENGIAVINADNNDWANWQHKLNGKTVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S    +  DF           +   +     S++V     G H   N L    +   
Sbjct: 238 R-FSPTFGEGIDFSATDVNISPLNTAFTLHSPQGSIDVSLPVPGRHNIANALAAAALAMS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A  +     L+     +GR      +      TL+D+SYNAN  SM AA  VL+++  
Sbjct: 297 VGASPENVRAGLATLQSVKGRLFPIVISEG---KTLLDDSYNANVGSMTAAAQVLAEMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+  +GDM E+G  S+  H  + E +    I  V+  G     + D    S    
Sbjct: 353 ---GYRVMAVGDMAELGAESEHCHRQVGEAIRDAGIDKVFSIGHDSRIISDV---SGCGE 406

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           + E    L   + S L +  V  V++K S S    +++  L E
Sbjct: 407 HLEDKAALTARLTSLLSEHAVITVLIKGSRSAAMEQVVRALQE 449


>gi|158320408|ref|YP_001512915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140607|gb|ABW18919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus oremlandii OhILAs]
          Length = 464

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 205/469 (43%), Gaps = 17/469 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +A  G  I       +  +S D+R+I     F  + G  +DGH FI  A++ GA
Sbjct: 5   NIQAIARACNGTIIKKGSVDTIGSVSTDTRTIQKGSLFVPLIGEKFDGHTFIEEAIKNGA 64

Query: 66  GLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
             V V              + +  V D L AL  ++V  R       I +TGSVGKT+TK
Sbjct: 65  QAVFVQEGHNTKTIQAFNDVWLIEVKDTLKALQAISVYYRKLFPIPFIGVTGSVGKTSTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++++  LS     +  +G++NN IG+PLTL  +  +    + E+GMS  GEIR L  +V 
Sbjct: 125 DLISGVLSGKFNVHKNLGNFNNEIGLPLTLFNLEENHQISVLEMGMSSFGEIRDLVDMVH 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I VIT I  +H+ +    E I  AK EI    ++   + +N DD   E L+       
Sbjct: 185 PEIGVITNIGVSHIEHLGSKEGILKAKMEIASNFKEGNYLLVNGDD---EYLRCIHKDDK 241

Query: 244 IKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             T+  +G S   DF     +    E S   V++ G+++      +G H   N L  + I
Sbjct: 242 DYTVIFYGLSSTNDFYPMSVEDLGEEGSAFTVEINGEAVPFKIRQLGIHNVYNALAAVWI 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   + L  F P + R       + +G   +I+++YNA+P SMKAA+ VL  
Sbjct: 302 GLKYHMTFEEIQRGLDGFQPSKMRL----EVITKGRMKIINDAYNASPDSMKAALDVLDH 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +  + +   IAVLG+M EMG  S+  H  +    +  NI  +   G     +     +  
Sbjct: 358 MKSNRK---IAVLGNMFEMGSFSEEGHRSVGAYFAKKNIDILVTVGEMANWIGLEAKKYG 414

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                + +          +   + + D ++VK S       ++N L E 
Sbjct: 415 IEENSIRHVFNNKEAIEMLGQFVQEEDAILVKGSRGMAMEEIVNFLQER 463


>gi|56418759|ref|YP_146077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
 gi|56378601|dbj|BAD74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Geobacillus
           kaustophilus HTA426]
          Length = 458

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 206/461 (44%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  AVQKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAVQKG 64

Query: 65  AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+    +     G   + V   DD L AL +LA   R +    +I +TGS GKTTTK
Sbjct: 65  AAAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGMKVIGVTGSNGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + R
Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAR 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AHL      E IA AK EI  GL   G    + D+        K     
Sbjct: 182 PDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPKLPLPR 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG  +  D+     +  +  +         ++      +       +   L  +
Sbjct: 242 --HVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHYVYNALAAI 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++            +     +    R      +  FT+I+++YNA+P SM+AA+ +L ++
Sbjct: 296 AVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQEL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPR 420
           S + +   IAVLGDM E+G+   +FH ++ EVL    + +V+  G     +  A      
Sbjct: 356 SGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLSHHIAAAAAPFFD 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              V   +    L   ++S     D+V++K+S       L+
Sbjct: 414 DGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454


>gi|238925282|ref|YP_002938799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
 gi|238876958|gb|ACR76665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Eubacterium rectale ATCC 33656]
          Length = 464

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVG
Sbjct: 65  TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD     ++  
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    I          +        +    +             +   H  G H   N +
Sbjct: 241 NGKPAIYYGKESASGVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNVYNAM 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      +       GR    +        T+ID+ YNANP SMK++I
Sbjct: 301 AAAAVGLQLGLTIAEIKSGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL     H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G         
Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + +HY E  + +   + S + +GD ++VK+S+   F +++  L +
Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSK 464


>gi|271502046|ref|YP_003335072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
 gi|270345601|gb|ACZ78366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech586]
          Length = 453

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 211/468 (45%), Gaps = 21/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   L   +    +G      ++ +S D+R +     F A++G  +D HD+ + A
Sbjct: 1   MISV-SLRQLADVLGARLVG--ENLTISDVSTDTRKLNAGCLFVALRGEKFDAHDYAVDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V+  +      + +P   VDD   AL  +A   R +S+A ++A+TGS GKT
Sbjct: 58  VNNGAAALLVSKHL-----PIDVPQLVVDDTRLALGVMAGWVRQQSRARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T 
Sbjct: 113 SVKEMAASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP  A++  +A AHL  F  +E +A AK EIF GL   G   +N D +     +    
Sbjct: 173 MVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQDVLT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G     DF     +     +   +      + V     G+H   N L   
Sbjct: 233 GKTLWRFSPQG-HDGVDFYASDIRVSERGTDAVLHTPMGDIAVTLPLPGHHNIANALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A ++     L       GR              L+D+SYNAN  SM AA  VL
Sbjct: 292 ALALTVGASLEAVKVGLEQLQAVPGRLF---PIALAPGKLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G   + + +A   
Sbjct: 349 AEMP----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGTLSVLIGEA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSL-VDGDV-VVVKSSNSCGFYRLINLLLE 466
           S    + +    L   +++ +     + V++K S S    ++++ L E
Sbjct: 402 SGTGEHFDNKAALIERLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|99081859|ref|YP_614013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
 gi|99038139|gb|ABF64751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria sp. TM1040]
          Length = 463

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 171/466 (36%), Positives = 250/466 (53%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A             VNGISID+R+I P + F A+K    DGHDF+  A
Sbjct: 1   MS-LWTAQE---AAAATGGRATSDWQVNGISIDTRTIEPGDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V+   +    +   P+  V+DV  AL  L  A R R+KA ++A+TGSVGKT
Sbjct: 56  LEKGAGAALVSH--IPEGVAEDAPLLLVEDVQTALEALGRAGRARTKARVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L+ 
Sbjct: 114 STKEMLAAMLTPQGRTHAAVASYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEIAPLSR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D     +L+  + 
Sbjct: 174 QARPHVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEPGGIAVLNADLEETPVLRDVAQ 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+ T +      + D+ L++ +   + +   +    +        +G H A N    L
Sbjct: 234 DAGVATRWF--GQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEIQSLGVHFAMNATGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L AD++ A+  L  + P +GRG R+   L  G  T++D++YNANP S+ AA++VL
Sbjct: 292 AAIEALGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLDDAYNANPTSIGAALTVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      EGRRIA L DM E+G      H  LA+  +L  I  V   G  +  L  ALP 
Sbjct: 352 AATP--TEGRRIAYLADMKELGPEEARLHAGLADHPALAKIDAVHCIGPLMKHLYAALPE 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    + ET       + + +  GDVV+ K S S    R+++ + E
Sbjct: 410 NKRGTWVETSAEAASALPAQIQGGDVVLAKGSLSMAVARVVDAIRE 455


>gi|225019358|ref|ZP_03708550.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
 gi|224947989|gb|EEG29198.1| hypothetical protein CLOSTMETH_03311 [Clostridium methylpentosum
           DSM 5476]
          Length = 467

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 205/463 (44%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   + QA++G          VN + ID+R +     F AI+G  +DGHDFI  A + G
Sbjct: 22  LTLIQVAQAVRGEL-RNPADLTVNAVVIDNRLVTTGCLFVAIRGERFDGHDFIPSAFESG 80

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   V + ++         P   V D   AL  LA   R      ++ +TGSVGKTTTKE
Sbjct: 81  AAAAVSDREI-----ETDRPYILVKDTREALLDLARCYRRAFDGLVVGVTGSVGKTTTKE 135

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LS+  KT    G+ NN IG+P T+  +    +  + E+GMS LGEI  LT    P
Sbjct: 136 MIAAVLSAGYKTLKTQGNLNNAIGLPRTIFELDSTYEAAVIEMGMSALGEISLLTRTALP 195

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT I  +HL      E I  AK EI EG+     + +N D+   + ++     L  
Sbjct: 196 DIGVITNIGVSHLETLGTRENILKAKLEILEGMAPGAPLVINGDNDLLQTVQLDRPVLTC 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + +AD++    +     +  ++     ++ V+   IG H   N L    +  
Sbjct: 256 GI-----DNPDADYRAVNIQPRGFDTEFDIVYGENAVHVLLPAIGEHNVLNALFGFAVGR 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +      AL  + P        +         LI++ YNA+P SM+AA++ L Q+S
Sbjct: 311 FAGMEDAAIATALGTYTPSG----MRQNTRTVNGVMLIEDCYNASPDSMRAALTTLQQLS 366

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+IAVLGDM E+G +SQ  H +  E+     +  ++  G              HV
Sbjct: 367 --CAGRKIAVLGDMLELGPVSQQAHAEAGELAQKCGVDALFCFGALSRETAKHGEGIPHV 424

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +    L   +   +  GD V+ K+S       +I+ + ++
Sbjct: 425 EWFDDKQSLAQSLSGFVQPGDAVIFKASRGMKLEEVIHAVFDK 467


>gi|291166343|gb|EFE28389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Filifactor alocis ATCC 35896]
          Length = 452

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 228/469 (48%), Gaps = 23/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN L  F  +++  +G  +G       +  I+ DSR +   + F AIKG H+DG+ F+  
Sbjct: 1   MNILK-FSQIVEWTEGVVLGDSMFSESIYSITTDSRKVKQGDLFIAIKGEHFDGNHFVDM 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA  V+ +      I   S  V  V D + AL KLA   R      +I+ITGS GK
Sbjct: 60  ALDNGAVAVLSS------ISHKSPRVITVPDTVKALGKLASGYRDMLDIPVISITGSSGK 113

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+  AL+S    Y   G++NN IG+PLT+     + D  I E+GMS LGEI +L 
Sbjct: 114 TTTKDMIFYALNSQCNAYRTEGNFNNEIGMPLTILNSDEEHDVMILEMGMSSLGEIEYLC 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I VIT I  AHL      E+I  AK EI   + +   + +N +D F   L    
Sbjct: 174 SIAKPNIGVITNIGTAHLEQLGSQEKIFEAKMEITSFMHEKDILLVNGEDKFLRNLDKDV 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +      I +FG S + D+  + +    + + +   + G  +      +G H   N L  
Sbjct: 234 YQP---MIKTFGFSNSCDYFCKNYDYREDSTDICAMIDGLEVNYTIPSLGKHNILNSLAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG+ S+L  D+  A K+L  F P + R         +   T+I++SYNANP S+    SV
Sbjct: 291 LGVASVLQMDLQKAAKSLIDFQPSKLRM----QIEKKDGITIINDSYNANPDSV---KSV 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS ++     RRIA+LGDM E+G  S  +H  + E  + ++   +   G     +++   
Sbjct: 344 LSILAEKNNVRRIAILGDMLELGRDSDKYHRQIGE-CAAHSCDILIGIGMFSDYMREGAL 402

Query: 420 RS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    +   T +     I+  +  GDVV++K S      +LI+L+
Sbjct: 403 EHGMDEGFCYSFRTQEESVTTIKDIMRVGDVVLLKGSRGMAMEKLIDLI 451


>gi|315646027|ref|ZP_07899148.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
 gi|315278788|gb|EFU42102.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus vortex V453]
          Length = 472

 Score =  268 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 199/465 (42%), Gaps = 11/465 (2%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +     G           + G+  DSR+I P   F  I G  +DGH+F    +  G
Sbjct: 5   SLKSIADLCGGTLSRNQDANIIIQGVGTDSRTIQPGNLFVPIVGEKFDGHEFAESVLASG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG      D         +P+  V+D L AL  LA A    + A ++ ITGS GKTT K+
Sbjct: 65  AGAAFWQRDHQPVP---DLPLILVEDTLTALQSLAAAYLSETSAKVVGITGSNGKTTVKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +  K +   G+YNNHIG+PLT+  M  D D  + E+GMS   EI  L+ + RP
Sbjct: 122 MVSALLETTYKVHKTQGNYNNHIGLPLTVLAMKEDTDIIVLEMGMSGRHEIELLSTIARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  AH+      EEIA AK EI  G++  G +  + D+   + + A+   +  
Sbjct: 182 DMTVITNIGEAHMLQLGSREEIARAKLEIISGMKPGGLLIYHGDEPLIDQVLAEESTVKP 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + + +F                     +       + E     +         +    V+
Sbjct: 242 EGLNTFTFGNQETNDDYPTGLMFHARGIIFTSNRHAGEGFSLPLLGRHNVVNALAAMAVA 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D AI   S F   +    R          T+++++YN++P ++KAA+ VL  + 
Sbjct: 302 AHLGIGDEAI--RSGFANLKLSSMRIEAVETPFGVTVLNDAYNSSPTAVKAAVDVLGDMK 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
            + +   IAVLGDM E+G+    FH ++ + LS  N   V+  G   +   +        
Sbjct: 360 GYRKR--IAVLGDMLELGQREGEFHAEIGDYLSPDNADLVFTYGPLSVHTAERAKLRFPD 417

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             V      + L   +   + + D+V+VK+S       +++ L  
Sbjct: 418 GAVLSFTDKEKLIASVLEHVSEKDIVLVKASRGMRLEHVVDALKA 462


>gi|118581693|ref|YP_902943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pelobacter
           propionicus DSM 2379]
 gi|118504403|gb|ABL00886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter propionicus DSM 2379]
          Length = 469

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 186/466 (39%), Gaps = 17/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +++  ++  A  G          V+G+S DSR++A  + F  ++G  +DGHDFI     K
Sbjct: 1   MFSIAEIAAATAGG-FQGDRSARVSGVSTDSRTVAAGQLFVPLRGERFDGHDFIPQVAAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   V+ +      I    + V  V D L AL  LA A R R    ++ ITGS GKTTTK
Sbjct: 60  GVAAVLADQSFDGEIPP-GLTVVRVVDTLVALGDLAAAYRRRFDLPLVGITGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L          G+ NN IG+P  L R+     + + E+GMS  GEI  L  +  
Sbjct: 119 EMLATILEQTGPGLKTAGNLNNLIGLPQMLFRLDASHGWAVLEMGMSEPGEIDRLAEVAA 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++    PAHL +   +E +A AK E+   L   G   +N DD     L A   +  
Sbjct: 179 PQTGIVLNACPAHLESMGSVEGVARAKGELLLRLPAGGCAIINADDP----LIAGQPSPP 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG                      + L    + VV    G H   N L      
Sbjct: 235 GVRRLTFGLGDADVRATEITSLGIGGQSFLLHLGEIVLPVVLWSYGRHAVYNALAAAAAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +     L  F P      +     + G   LID+SYNANPASM+AA++ L ++
Sbjct: 295 HGLGIAAELIQSGLERFRP----YDKRFQLEDVGGLVLIDDSYNANPASMEAALTTLGEL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
              G GR    LGDM EMG      H  L    +      ++L G  +         +  
Sbjct: 351 --KGGGRAFVALGDMLEMGSNEAELHRALGVRAAAV-ADRLYLCGPLMAHAAVGALSAGM 407

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               V      D +   I      GD V+VK S      ++   + 
Sbjct: 408 VEEQVMRIPDHDEIAASILRQARPGDFVLVKGSRGMRMEKVAEAIR 453


>gi|50122741|ref|YP_051908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|49613267|emb|CAG76718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 453

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 131/463 (28%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R ++    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  ++     +  P   V D   AL +LA   R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKRLL-----VDEPQLLVSDTRLALGQLAAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F             
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHW-QVMLNHKTV 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + + DF        ++ +   +       +V+    G H   N L    +   
Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTHFTLHTPFGETQVLLPLPGRHNVSNALAATALAMS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     LS      GR              L+D+SYNAN  SM AA  VL+++  
Sbjct: 297 VGATLEAVKSGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +  A   S +  
Sbjct: 353 ---GYRVMVVGDMGELGDEAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGNGE 406

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           + +    L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 407 HFQDKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|170682834|ref|YP_001742208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
 gi|170520552|gb|ACB18730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SMS-3-5]
          Length = 452

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    +   N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLDAIKAGLANLKAVPGRLFPIQLVEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|302546146|ref|ZP_07298488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463764|gb|EFL26857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 475

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 201/474 (42%), Gaps = 13/474 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  ++   + G    I  P   V G + IDSR + P   F A+ G H DGHD+  
Sbjct: 1   MIPL-SLTEITGLVGGQPHDIPDPDLKVTGPVVIDSREVRPGSLFAALPGEHVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+    +  S     +P   V DV+ A+  +A A   R   T++A+TGS G
Sbjct: 60  GAVEAGAVAVLATRPV--STPDAPVPALVVPDVVAAMGAIARAVVERLGTTVVALTGSAG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+PLT  R        + E+G    G IR+L
Sbjct: 118 KTSTKDLIAQLLQRHGPTVWTHGSFNNEIGLPLTALRADTTTQHLVLEMGARGKGHIRYL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 178 TDLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPSAEDG-GVAVLNADDPLVRA 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +        FG++ +A  +    +  ++       L   +         Y        
Sbjct: 237 MASRTKARTVLFGEAGDAHVRASNVRL-ADGGRPAFTLHTPTGCGDVTMRLYGEHHVSNA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A+++    +    R          T+++++YNANP SM+AA+ 
Sbjct: 296 LAAAAVAHETGMSVDEIAVALSEAGQLSRWRMEVTERSDGVTVVNDAYNANPESMRAALR 355

Query: 359 VLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
            L+ +     GRR  AVLG M E+G+ S + H  +  +    N+S +    G     L  
Sbjct: 356 ALAAMGAATPGRRTWAVLGPMAELGDESLAEHDAVGRLAVRLNVSKLVAVGGREAAWLDM 415

Query: 417 ALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                        +   +      ++S L  GDVV+VK+S S G  +L   LLE
Sbjct: 416 GAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLEQLAQALLE 469


>gi|209884378|ref|YP_002288235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
 gi|209872574|gb|ACI92370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Oligotropha
           carboxidovorans OM5]
          Length = 478

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 205/468 (43%), Positives = 276/468 (58%), Gaps = 2/468 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LWT   + +A+     G +P+  +NGISIDSR+IAP EA+FAIKG  +DGH F+  A+
Sbjct: 3   TALWTTAAMAEAMHATRSGALPE-SINGISIDSRTIAPGEAYFAIKGDVHDGHAFVEAAL 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + G GL V+     A   S  +P+  V DVL  L  LA AAR R++A I+A+TGSVGKT+
Sbjct: 62  KNGGGLAVIAQSQRAKF-SGDLPLLVVPDVLAGLVDLAKAARARTQAKIVAVTGSVGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   L +   T+    S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  L
Sbjct: 121 TKEALRTVLQAQGATHVSAASFNNHWGVPLSLARCPQDAKFAVFEIGMNHAGEIEPLVKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L  ++ A
Sbjct: 181 VRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAILNRDNSQFARLAERAKA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I +FG++++AD +L      +E S +   +    +       G HMA N L  L 
Sbjct: 241 CGVARIVTFGENEHADARLLDVALHAECSAVHADVLDHDVTYKVGVAGRHMAMNSLAVLA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             +++  D+  +  AL+ F P  GRG R+   L  G  TLIDESYNANPASM AA+SVL 
Sbjct: 301 ASTLVGGDLALSALALAAFEPTAGRGVRHALGLPGGTATLIDESYNANPASMAAAMSVLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++   +GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  +  L DALP +
Sbjct: 361 RVAIGPQGRRIAVLGDMLELGPQGRELHRGLAAAITANRIDLVFCCGPLMHDLWDALPSA 420

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               YSET  GL   + + +  GD ++VK S       ++  L + FP
Sbjct: 421 RKGGYSETSVGLESQLVAGVRAGDAIMVKGSLGSRMKVIVTALEKNFP 468


>gi|312876347|ref|ZP_07736332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796841|gb|EFR13185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 448

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 216/463 (46%), Gaps = 22/463 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI G          V   SI+S++I     F  +KG  +DGHDFI  A+Q GA 
Sbjct: 5   LSEIATAINGELRNFSGDVLVKNFSINSKNIEKDTLFIPLKGSRFDGHDFIKEALQNGAI 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEM 125
             +   D       L +P   V+D L AL  LA   R +     ++ +TGSVGKT+TKE 
Sbjct: 65  SFISQKD----FDDLKVPYVKVEDTLLALQSLACYVRRKLNHLKVVGVTGSVGKTSTKEY 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+ + +P 
Sbjct: 121 IFNVLSLRYKAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLSQIAKPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K +      +
Sbjct: 181 IGVITNIGIAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEL----KR 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G    ++F+ +  ++           +            +H   N L  + + +I
Sbjct: 237 KVVTIGIENESNFRAQNVQRHQNGFS----FEVGGYTYFIESFNFHDIYNSLFAIAVGTI 292

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +   +A+      + R       + +G  T++D++YNA+  SM +AI  + +   
Sbjct: 293 LGVDRELIKEAIRQKERLKRRF----EVIKKGSITIVDDTYNASTHSMLSAIDSICEF-- 346

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D + +     
Sbjct: 347 --DGKKILVLGDMLELGEFSEEEHKKVGRYILQKPIDVVICTGKDAFYIFDEVKKKDGTK 404

Query: 426 -YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            Y  T D     ++  +     ++ K+S       +++  L+E
Sbjct: 405 AYFVTKDECLDVLKREVTSNSTILFKASRGIKLDEVVDEFLKE 447


>gi|307132587|ref|YP_003884603.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
 gi|306530116|gb|ADN00047.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Dickeya
           dadantii 3937]
          Length = 453

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 207/468 (44%), Gaps = 21/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   L   +    +G      ++ +S D+R +     F A++G  +D HD+   A
Sbjct: 1   MISV-SLRQLADVLGARLVG--EDLTISEVSTDTRKLTTGCLFVALRGEKFDAHDYAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V+  +      + +P   VDD   AL  +A   R +S+A ++A+TGS GKT
Sbjct: 58  VNDGAAALLVSKHL-----PIDVPQLVVDDTRLALGTMAGWVRQQSRARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T 
Sbjct: 113 SVKEMTAAILRQCGNVLYTAGNFNNDIGVPLTLFRLMPEHDYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP  A++  +A AHL  F  +E +A AK EIF GL   G   LN D            
Sbjct: 173 MVRPEAALVNNLAAAHLEGFGSLEGVAQAKGEIFSGLPAQGVAILNADSHDEARWHDA-L 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   +  +S       DF           +   +      + V     G H   N L   
Sbjct: 232 AGKTRWRFSPQARAGVDFYASDVGISERGTDFVLHTPAGDIAVTLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR              L+D+SYNAN  SM AA  VL
Sbjct: 292 ALSLAVGASLDAVKAGLAQLQAVPGRLF---PIALAPGKLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G     + DA   
Sbjct: 349 AEMP----GYRVMVVGDMAELGQDAQACHRQVGEAARKANIDKVLSVGVLSALIGDA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSS-LVDGDV-VVVKSSNSCGFYRLINLLLE 466
           S    + +    L   +++       + V++K S S    ++++ L E
Sbjct: 402 SGTGEHFDNKTALIARLRALVAQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|154503508|ref|ZP_02040568.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
 gi|153795608|gb|EDN78028.1| hypothetical protein RUMGNA_01332 [Ruminococcus gnavus ATCC 29149]
          Length = 456

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 198/469 (42%), Gaps = 22/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V+ + IDSR +     F AI+G   DGH FI   ++
Sbjct: 4   MTLKEIAVACGGIYYGDDESYYKEVSSVVIDSRKVEKDCLFIAIRGARVDGHMFIPQTIR 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +        I + S P   V     AL  +A   R      ++ +TGSVGKT+T
Sbjct: 64  DGALCALSEKR----IENASYPYILVTSCEQALKDIAEHYRKSLNLKVVGVTGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + ELG+S+ GE+  L  + 
Sbjct: 120 KEMIASVLGEKYNVLKTAGNFNNEIGLPLTIFNIREEHEVAVLELGISNFGEMERLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I  AHL +    + I  AK EIF  +   G+I LN DD     +    H  
Sbjct: 180 RPDICVITNIGVAHLEHLKSRDGILKAKTEIFLYMNPNGSIILNGDDDKLSTV----HPA 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  FG   + DF   + + C    +         +        G HM  N L  + 
Sbjct: 236 NGIQPVFFGLDDSRDFYADQVESCGLRGTNAVFHTPNSTFSAHISIPGEHMVLNALAGIA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L  + +     +    P  GR             T+ID+ YNANPAS KA++ VL+
Sbjct: 296 AGYALGMNDEEIKAGIEALVPLAGRNNLIE----TDSLTIIDDCYNANPASTKASLDVLA 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 + R+IAVLGDM E+G   +  H ++ +  +   I  +   G     +       
Sbjct: 352 ----KADTRQIAVLGDMFELGPTEKQMHYEVGKYAAGLGIDILVCIGQLSEHMATGASEQ 407

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V Y ET D  F      L   D V+VK+SN   F  ++++L E 
Sbjct: 408 CSKTQVFYFETKDDFFEQADRILNPKDTVLVKASNGMKFSEIVSVLKER 456


>gi|261823020|ref|YP_003261126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607033|gb|ACX89519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 207/463 (44%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R ++    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIG--ENIDIEDVSTDTRKLSSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   V D   AL +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKRL-----HIDVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +   +   + 
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPVDGVAIVNADSNDFPHWQVTLNHKTVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + N DF        ++ +   +       +V+    G H   N L    +   
Sbjct: 238 R-FSPQAACNIDFFASDVAVLAQSTRFTLHTPFGDTQVLLPLPGRHNVSNALAATALAMS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     LS      GR              L+D+SYNAN  SM AA  VL+ +  
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLADMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +      + +  
Sbjct: 353 ---GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDCVLSVGTLSKLISQ---SNGNGE 406

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           +      L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 407 HFHDKAALISRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|15895397|ref|NP_348746.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
 gi|15025118|gb|AAK80086.1|AE007713_11 UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum ATCC 824]
          Length = 452

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 215/463 (46%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +AVQKG
Sbjct: 1   MTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 60

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L +V+            I +  V+D   AL  LA   R      ++AITGS GKT+TK
Sbjct: 61  AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  +    R
Sbjct: 121 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK EI +   K   + +N D+   +  + KS  + 
Sbjct: 181 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLKKHEFKSINVL 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++   G     +  L +     E          +  ++V +  G H  +N ++++   
Sbjct: 241 KTSLNKEGNLNAENLCLHEGNSEFE---------VQGEKLVLNMPGKHNIENAMLSIAAA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L        R       +N     ++D+SYNA+P SM AAI V   +
Sbjct: 292 LKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDVTKNL 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +    RIAVLG M E+GE S   H ++       NI  + + G    A  D      +
Sbjct: 348 KGNR---RIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 405 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 447


>gi|330839657|ref|YP_004414237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747421|gb|AEC00778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           ;UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Selenomonas sputigena ATCC
           35185]
          Length = 966

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 8/469 (1%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 501 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 560

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 561 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 620

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 621 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 680

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K  A   
Sbjct: 681 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREK--AKAG 738

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIV 303
             + +FG S++AD +     +        ++ + +      H        ++ +      
Sbjct: 739 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 798

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +  ++  +          K        G +T ++++YNA+P S +A++  L+++
Sbjct: 799 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEM 858

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A      
Sbjct: 859 FA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAKAGGV 915

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             V    + +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 916 PLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 964



 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 153/482 (31%), Gaps = 50/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV+K
Sbjct: 1   MKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  ++   ++   I   +  V  V ++  AL  +          K  II ITG+ GKTT
Sbjct: 61  GACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTL-------------ARMPVDVDFGIF 165
           T  M    L            I        +P+                     +DF + 
Sbjct: 119 TSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVVM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF- 224
           E+  S     +     +    AV T +   HL     +E    AKA +F+ + + G    
Sbjct: 179 EV--SSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKEG 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +       A       ++   K A  +    +  +    + +      M++ 
Sbjct: 237 KTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDLS 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N++  +G         +   +AL  F    GR +                
Sbjct: 297 LGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVD--- 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++  ++   +I+    GR + V G     G         +   ++      V
Sbjct: 354 -YAHTPDGLENILNTAREIAA---GRILTVFG----CGGDRDRTKRPIMGRIAAALSDVV 405

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +                + + +    H   ++    +     +     D+V++  
Sbjct: 406 LVTSDNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVR-AVALAEKDDIVIIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|291524421|emb|CBK90008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale DSM 17629]
          Length = 464

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETLLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHKFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +  ++GA +V+   ++    G    P   V     A+ KLA   R      ++ ITGSVG
Sbjct: 65  NVFEQGAAIVLSEHELKDPAG----PYVLVGSTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD     ++  
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLGDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    I          +        +    +             +   H  G H   N +
Sbjct: 241 NGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAQIHIPGEHNVYNAM 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      +       GR    +        T+ID+ YNANP SMK++I
Sbjct: 301 AAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL     H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G         
Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|300362414|ref|ZP_07058590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
 gi|300353405|gb|EFJ69277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri JV-V03]
          Length = 455

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGK--PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++     +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNDSEQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP ++KA  +   Q+   
Sbjct: 295 GENYEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVK 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAAN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDEMNHMIDDLKNDIKPDDIVMLKGSHGMHLEKVLDRLM 455


>gi|283783873|ref|YP_003363738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
 gi|282947327|emb|CBG86872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Citrobacter rodentium ICC168]
          Length = 452

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 213/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLAGILGGELKGD--DLTLDAVTTDTRKLTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +        +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   
Sbjct: 113 SVKEMAAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHDFAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + ++DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRKVWR--FSANAADSDFTATNVHVTSHGTEFTLQTPVGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +     A +      L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 SLSMAAGAPLAAIKAGLANLKAVPGRLFPVQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ +        I  V  +G    A+ +A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHLQVGNAAKAAGIDRVLSTGKLSQAISEA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   +++ + +     ++VK S S     ++  L E+
Sbjct: 401 SGVGEHFADKTALIARLKALVEEQQMITILVKGSRSAAMEEVVRALQEK 449


>gi|295425678|ref|ZP_06818365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064694|gb|EFG55615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 455

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 209/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +     +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA 
Sbjct: 5   LAEIAKALN-TTCESDEKTIITSVAFDSRKITDGGLFVPLEGER-DGHDFVAGAINNGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLW--KKGHPNKPDDIAVLEVDDPLEAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +
Sbjct: 121 AAVLSKRFNVHKTQENFNNGIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L + G    N D+        K +      
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLAERAKKINQAKA-- 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG   N       ++     +     +     +     IG H   N +  + +    
Sbjct: 239 --TFGFEDNDTVYATGFRSYKHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    +L+ F P   R +  +  + +    ++ + YN+NP +++A ++   QI   
Sbjct: 295 GESDEEIAASLANFTPTANRMEWEKGDVGED---IMSDVYNSNPTAVRAVLNSFGQIEMP 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ V+L G  +  L +AL       S
Sbjct: 352 NGGRRIAVLGDMLELGKKSPELHAGLANSLDPQVINEVYLIGDEMKHLYEALQTKYSEES 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H + ++ MD +   +++ +   D+VV+K S+     +++  L 
Sbjct: 412 LHYYQADHMDHMIDDLKNDIKPNDIVVLKGSHGMHLEKVVARLR 455


>gi|312622929|ref|YP_004024542.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203396|gb|ADQ46723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 448

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 222/469 (47%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LW   ++ +A+ G          V   SI+S+SI     F  +KG  +DGHDF+  A
Sbjct: 1   MN-LW-LSEIAKAVNGELKIFSTDVLVKNFSINSKSIGKDTLFIPLKGSRFDGHDFVKEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
           +Q GA   +   D       L +P   V D L AL  LA  AR +     ++ +TGSVGK
Sbjct: 59  LQNGAISFISQKD----FDDLKVPYVKVGDTLLALQSLAYFARRKLNDLKVVGVTGSVGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE +   LS   + +   G++NNHIG+P+++  MP D    +FE+GMS+ GEI  L+
Sbjct: 115 TSTKEYIFNVLSLRYRAFKNQGNFNNHIGLPISILNMPEDTQVAVFEMGMSNFGEISKLS 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I VIT I  AH+ N      I  AK+EI +G+ ++G + +N D+    L K + 
Sbjct: 175 QIAKPDIGVITNIGVAHIENLKSRYNIFLAKSEIQDGMPESGILIINNDNDILNLHKKEF 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G    ++F+ +  ++           +            +H   N L  
Sbjct: 235 ----KRKVVTIGIENESNFRAQNVQKHQNGFS----FEVGGYTYFIKSFNFHDIYNSLFA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +IL  D +   +A+      + R       +N+G  T++D++YNA+  SM +AI  
Sbjct: 287 IAVGTILEIDRELIKEAILQKERLKRRF----EVINKGSITVVDDTYNASTHSMLSAIDS 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     +G++I VLGDM E+GE S+  H  +   +    I  V  +G     + D   
Sbjct: 343 ICEF----DGKKILVLGDMLELGEFSEEEHRRVGRYILQKPIDVVICTGKDAFYIFDEAK 398

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   V  Y  + D     ++  +     ++ K+S       +++  L+E
Sbjct: 399 KKDGVKAYFVSKDECLDVLKREVTSNCTILFKASRGIKLDEVVDEFLKE 447


>gi|260886499|ref|ZP_05897762.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863642|gb|EEX78142.1| Mur ligase family, glutamate ligase domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 968

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 210/469 (44%), Gaps = 8/469 (1%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++  D+ +A +   +        + I  D+R IA    F A++G  +DG DF   AV+KG
Sbjct: 503 FSLADIERAAKAEVVRTAADIAFSDIVTDTRKIAAGSLFVALQGERFDGADFAAQAVEKG 562

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V  D   +    +  V    D L A  ++A A R +    ++AITGS GKTTTK+
Sbjct: 563 AAGVLVAVDTPEAKLPKTGVVLKAKDTLLAYQQIAAAWRRKFSIPVVAITGSNGKTTTKD 622

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L +         +YNN IG+PLTL  +    +  + E+GM  LG+I  L  L  P
Sbjct: 623 LTAAVLGACLLVQKTAANYNNEIGLPLTLLGLRAAHEAAVVEIGMRGLGQIAALAPLAAP 682

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++T +   H+     IE IA AKAE+ E +E  GT+ LN DD+    ++ K  A   
Sbjct: 683 TVAIVTNVGEVHMELLGSIENIARAKAELVEAVEPGGTVILNADDARVLAMREK--AKAG 740

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIV 303
             + +FG S++AD +     +        ++ + +      H        ++ +      
Sbjct: 741 VRVVTFGLSRDADVRAVAVGKAEGGMRFMLEWKNERGRLERHELFLPMPGRHNVSNALAA 800

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +  ++  +          K        G +T ++++YNA+P S +A++  L+++
Sbjct: 801 IAAARVLGLSLADVRRGLAVPPAQKMRFAVEKCGAYTFVNDAYNASPVSTRASLKTLAEM 860

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GR+IAVLGDM E+G  S+S H  + E  +    + V   G     + +A      
Sbjct: 861 FA---GRKIAVLGDMLELGSASKSGHASVGEEAAHLGFAAVLSRGEESRFIAEAAKAGGV 917

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             V    + +     ++  L  GD V+ K S       +I LL +   A
Sbjct: 918 PLVERMTSHEAAAARLKEILQPGDAVLFKGSRGMKMDEIIPLLKKALEA 966



 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 153/483 (31%), Gaps = 50/483 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            + T  +L   ++G  I       +  I  DSR +     F AI+G H DGH FI  AV+
Sbjct: 2   AMKTLAELAALVEGAEIKGDAAAKIADIVHDSREVTEGTLFVAIEGLHVDGHSFIAQAVE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           KGA  ++   ++   I   +  V  V ++  AL  +          K  II ITG+ GKT
Sbjct: 62  KGACAILTEREI--EIPEGAAAVLRVPNLAAALEVIVPFFHDYPSRKMRIIGITGTNGKT 119

Query: 121 TTKEMLTIALSSIKKT---YACIGSYNNHIGVPLTL-------------ARMPVDVDFGI 164
           TT  M    L            I        +P+                     +DF +
Sbjct: 120 TTSYMTRAILREAGYKVGLIGTIQILVEDEALPIHNTTPDVVVLERTLAYMARRGMDFVV 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S     +     +    AV T +   HL     +E    AKA +F+ + + G   
Sbjct: 180 MEV--SSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLENYKRAKARLFDLVSRKGAKE 237

Query: 225 -LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +       A       ++   K A  +    +  +    + +      M++
Sbjct: 238 GKTAVVNDDDAAGETMLAHAKCAHLTYAVKKEAALRAENIRVHARGLELTLAGAFGRMDL 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N++  +G         +   +AL  F    GR +               
Sbjct: 298 SLGVTGIFNVYNVMSAVGAALAERIAPEAIKRALEAFKSVPGRFELVDAGQAFSIIVD-- 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P  ++  ++   +I+    GR + V G     G         +   ++      
Sbjct: 356 --YAHTPDGLENILNTAREIAA---GRILTVFG----CGGDRDRTKRPIMGRIAAALSDV 406

Query: 404 VWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           V ++  +                + + +    H   ++    +     +     D+V++ 
Sbjct: 407 VLVTSDNPRTEDPARILDEVEVGVLEKIGDKCHEKIADRRTAIVR-AVALAEKDDIVIIA 465

Query: 450 -KS 451
            K 
Sbjct: 466 GKG 468


>gi|77919800|ref|YP_357615.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545883|gb|ABA89445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 463

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 146/464 (31%), Positives = 204/464 (43%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              ++    G        G V G+S DSRS+   + F  ++GP +DGHDFI  AVQ GA 
Sbjct: 5   LTQIMTITGGDLTPERADGVVTGVSTDSRSLRAGDLFVPLRGPRFDGHDFIAQAVQSGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +        I  L +PV  V D L AL  LA A R      ++A+TGS GKTTTKEML
Sbjct: 65  ACLSE----EVIAGLPVPVIRVTDTLRALGDLAAAVRQAFDGPVVAVTGSSGKTTTKEML 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+   +     G++NN IG+P TL R+  D  + + ELGMS  GEI  L  + RP I
Sbjct: 121 AGILALRGEGLKTEGNFNNLIGLPHTLFRLEADHHWAVLELGMSARGEIARLAEISRPDI 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT + PAHL     ++ +A AK E+F  L   GT  +N DD     L           
Sbjct: 181 GVITNVGPAHLETLHNLQGVARAKGELFAALPAGGTAVINGDDPRVLQL----PVANGVR 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              +G   +A+ +          +   + L G+S  V     G +   N L        L
Sbjct: 237 RLIYGCGSDAEVRAEDIAVDGHGTHFCLLLAGESWPVHLSVPGRYNVHNALAAAAAAHAL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  ++ L  F    GR      A      TL+++ YNANP ++KAA+S L ++   
Sbjct: 297 KVGGAQIVEGLEAFRSCAGRMAVAELASG---ATLLEDFYNANPLAVKAALSALDEMP-- 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
           G GRRIAVLGDM E+G+ +   H       S   +  + L G           +      
Sbjct: 352 GSGRRIAVLGDMLELGDAASEMHRQTGLDASKC-VDLLILLGERAEDTAAGARQGGMPPQ 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V   ++ D     +   L  GD V+VK S      ++ N L  
Sbjct: 411 SVWVVKSHDEAVQLLAGILRPGDRVLVKGSRGMTMEKICNALRA 454


>gi|297161283|gb|ADI10995.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 480

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 197/476 (41%), Gaps = 13/476 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  +++  + G    I      V G + IDSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-SLAEIIGIVGGQPHDIPDADRKVTGPVVIDSREVRPGGLFAALPGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+    + A+     +P   V DV  AL  LA A  LR  AT++A+TGS G
Sbjct: 60  RAVADGAVAVLAARPVPAAAADAPVPSIVVPDVQAALGALARAVVLRLDATVVALTGSAG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT           + E+G    G IR+L
Sbjct: 120 KTSTKDLIAQLLRRHGPTVWTPGSLNNEIGLPLTAMSADETTRHLVLEMGARGKGHIRYL 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P + ++  +  AH+  F G E IA AK E+ E L            +  + L   
Sbjct: 180 TDLTPPRLGLVLNVGTAHIGEFGGREAIAEAKGELVEALPAAAEG-GVALLNADDPLVRA 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                      FG++ +AD +    +  ++       L   +         Y        
Sbjct: 239 MATRTKARTVLFGEAADADVRAENVRL-ADGGRPSFTLHTPTGCSEVTMRLYGEHHVSNA 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A+++    +    R      +   T+++++YNANP SM+AA+ 
Sbjct: 298 LAAAAVAHELGMSVDEIAVALSEAGQLSRWRMEVTERRDGVTVVNDAYNANPESMRAALR 357

Query: 359 VLSQISPHG---EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L  +   G    GR  AVLG M E+GE S + H  +  +    N+S +    G     L
Sbjct: 358 ALVAMGTAGQAEGGRTWAVLGPMAELGEESLAEHDAVGRLAVRLNVSKLVAVGGQEAAWL 417

Query: 415 KDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                          +   +      ++S L  GDVV+VK+S S G  R+   LLE
Sbjct: 418 DMGAKNEGSWGEESVHVSDVRAAVDLLRSELRPGDVVLVKASRSVGLERVAQALLE 473


>gi|325509543|gb|ADZ21179.1| UDP-N-acetylmuramyl pentapeptide synthase [Clostridium
           acetobutylicum EA 2018]
          Length = 455

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 215/463 (46%), Gaps = 17/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF+++ +A+ G  I    +   N +SID+R ++    F AI G +++G+ FI +AVQKG
Sbjct: 4   LTFNEIAKAVNGKVILRGSKDVFNDVSIDTRKLSKGAIFIAINGENFNGNKFIHNAVQKG 63

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A L +V+            I +  V+D   AL  LA   R      ++AITGS GKT+TK
Sbjct: 64  AALCIVDEIHFEKDSFKEDISILLVEDTKKALLDLAEFYRSTLNIKVVAITGSTGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L S  + +   G++NN IG+PL + ++    +  + E+GM+H  EI  +    R
Sbjct: 124 DITASVLRSKFRVFKTSGNFNNEIGLPLMIFKLDKSYEVAVLEMGMNHFNEIHNMAKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    E I  AK EI +   K   + +N D+   +  + KS  + 
Sbjct: 184 PDIALITNIGISHIENLKSRENILKAKLEITDFFTKDNLLIVNGDNDLLKKHEFKSINVL 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             ++   G     +  L +     E          +  ++V +  G H  +N ++++   
Sbjct: 244 KTSLNKEGNLNAENLCLHEGNSEFE---------VQGEKLVLNMPGKHNIENAMLSIAAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   K L        R       +N     ++D+SYNA+P SM AAI V   +
Sbjct: 295 LKLGLTFEEIRKGLKDLELTAMRLD----IVNGENIVIVDDSYNASPDSMIAAIDVTKNL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +    RIAVLG M E+GE S   H ++       NI  + + G    A  D      +
Sbjct: 351 KGNR---RIAVLGTMRELGEKSYESHKEVGAYAKENNIDELLVVGEFSKAYLDGYKDKEN 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ET + L  F+++ +  GD+ ++K+S    F  ++  L E
Sbjct: 408 FSEFETNEELLKFVKTDIRKGDIFLIKASRLMKFENIVTKLKE 450


>gi|227113990|ref|ZP_03827646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 453

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      ++ +S D+R +A    F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIGESID--IDDVSTDTRKLASGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      +++P   V D   AL +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHL-----PINVPQLLVSDTRLALGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRHCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F             
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFSGLPADGVAIVNADSNDFPHW-QVMLNHKTV 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + + DF        ++ +   +       +V+    G H   N L    +   
Sbjct: 237 WRFSPQAACDIDFFASDVDVLAQGTRFTLHTPFGETQVLLPLPGRHNISNALAAASLAMS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     LS      GR              L+D+SYNAN  SM AA  VL+++  
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +   H  + E      I  V   G     +  A   S +  
Sbjct: 353 ---GYRVMVVGDMGELGDEAPECHRQVGEAARAAGIDRVLSVGTLSELIGTA---SGNGE 406

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           + +    L   ++  + + +V  V++K S S    ++++ L E
Sbjct: 407 HFQDKAALVSRLKVLMSEHNVISVLIKGSRSAAMEQVVHALQE 449


>gi|329122139|ref|ZP_08250747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466946|gb|EGF12462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dialister micraerophilus DSM 19965]
          Length = 460

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 214/467 (45%), Gaps = 13/467 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++F+++ +A     +     G    +SIDSR+I   + F A+KG  +DGHDF+++A +KG
Sbjct: 4   FSFNEIKKATSAELVSGKKTGVCFNVSIDSRTIKENDLFIALKGERFDGHDFVINACKKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++        S    VF V D   A   LA   R+R    ++A+TGS GKTTTK+
Sbjct: 64  ASAVIISDSECLEKISEDCTVFLVKDTKKAFEDLAHFNRMRFDIPVVAVTGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+++ LSS     +   + NN IG+ LTL  +  + D  + E+GM   G+I  L ++ +P
Sbjct: 124 MISVLLSSKFNVCSTEKNNNNEIGLSLTLLNITKEHDACVVEMGMRGFGQIEELCNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT +  +H+      E IA AK E+ + L + G   LN DDSF + +         
Sbjct: 184 TIGVITNVGTSHIGILGSKENIAKAKGELIQSLPENGIAVLNGDDSFVKKMGENFKG--- 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G + N      K    +  +        ++ +V    +G H   + L       
Sbjct: 241 -RVIYYGLNGNYTVYGEKVSFENFGTKYTCVCFDEAFKVNLKLLGIHNVYDALAATSTAR 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  DV    + LS F P        +  +      +ID++YNANP SM+ A+  L QIS
Sbjct: 300 ILGVDVTKIQRVLSDFSP----RAGRQSLIEINGIKIIDDAYNANPLSMEMALRSLKQIS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--I 422
              +     VL DM E+G+  + FH ++    +      +   G     +          
Sbjct: 356 AKNK---YLVLADMKELGKNEEKFHYEIGLKAADMGFCGIITVGDLAKFIAKGAKEKGMK 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            ++  +T       I +    GDV ++K S+S   Y + +LL EE  
Sbjct: 413 MIYSFDTCKEAAECILNIAKAGDVFLLKGSHSMQMYTIPDLLKEELE 459


>gi|255527762|ref|ZP_05394615.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296186674|ref|ZP_06855076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296187063|ref|ZP_06855462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|255508549|gb|EET84936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           carboxidivorans P7]
 gi|296048350|gb|EFG87785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
 gi|296048711|gb|EFG88143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium carboxidivorans P7]
          Length = 462

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 217/468 (46%), Gaps = 18/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +++ A+QG  +        N IS D+R I   + F A+KG +++G+++I  A   G
Sbjct: 4   MTFDEIVNAVQGKVVLQGNYEKFNQISTDTRKIDKDDIFIALKGENFNGNEYIKVASDNG 63

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +++              +  V+D   AL +LA A R +    +I ITGS GKT+TK
Sbjct: 64  ASMCIIDEIKYREDEIEKGTTIIKVEDTKKALLQLAKAYRNKLNLKVIGITGSNGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L  ALSS  K +   G++NN IG+PL + ++    D  + E+GM++L EI  +    +
Sbjct: 124 DLLAAALSSKYKVFKTQGNFNNEIGLPLMIFKLDNSYDIAVLEMGMNNLNEIHRMAEAAK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT +  +H+ N    E I  AK EI +  +K   + +N D+     +K+      
Sbjct: 184 PDIALITNVGVSHIGNLGSRENILKAKLEITDFFDKNSILIVNGDNDLLSGVKS-----N 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH--GIGYHMAQNMLMTLG 301
             +IY+ G     +      +         V+  GK  E   H    G H   N L+ + 
Sbjct: 239 KFSIYTTGMENGNNLNACDIELKENFVEFSVEENGKKFEETFHVEIPGKHTISNSLLAIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              IL  +     + L        R    +       F ++++ YNANP SMKAAI VL 
Sbjct: 299 CGRILGMENKDIKEGLKNLQTTAMRMDLIKGKK----FNILNDCYNANPDSMKAAIDVLK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +       RIAVLG M E+GE S   H ++ E  +   +  +   G +  A ++    S
Sbjct: 355 NVESSR---RIAVLGTMGELGEQSYKSHKEIGEYSAKNGVDLLLTFGEYNKAFEEGFKSS 411

Query: 422 IHVHY--SETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLE 466
               Y   +       ++ +  L +GD V+VK+S S  F +++  L +
Sbjct: 412 TKAEYKAFDDYSEGIKYLVNGYLKEGDTVLVKASRSMKFEKIVEELKK 459


>gi|331650983|ref|ZP_08352011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
 gi|331051437|gb|EGI23486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M718]
          Length = 452

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLYPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|291527561|emb|CBK93147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium rectale M104/1]
          Length = 464

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 201/472 (42%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L TF ++ +A +G  IG        + G  IDSR +     F  IKG   DGH FI 
Sbjct: 6   MKNL-TFANIAKACEGTYIGDETQLDTTITGAVIDSRQVKEGYLFIPIKGERVDGHRFIP 64

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++GA +V+   ++    G    P   V+    A+ KLA   R      ++ ITGSVG
Sbjct: 65  TVFEQGAAIVLSEHELTDPAG----PYVLVESTTDAMKKLAAFYRKSLDIKVVGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM++  L      +   G++NN IG+PLT+  +       + E+G+S  GE+  L
Sbjct: 121 KTSTKEMISSVLEQKYSVHKTAGNFNNEIGLPLTIFGIRESHQVAVLEMGISDFGEMHRL 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P + VIT I   HL      + +  AK E FE +       LN DD     ++  
Sbjct: 181 STMSCPDVMVITNIGYCHLEFLRDRDGVLKAKTECFEHMMPDAVAVLNADDDKLATVQTV 240

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    I          +        +    +             +   H  G H   N +
Sbjct: 241 NGKPAIYYGKESASDVHKSVYTTNIENLGFDGMKAHFVTPEGEFDAHIHIPGEHNVYNAM 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      +       GR    +        T+ID+ YNANP SMK++I
Sbjct: 301 AAAAVGLQLGLTIAEIKAGIEKAETIAGRTNFIKTHG----MTVIDDCYNANPVSMKSSI 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL     H +GR IAVLGDM E+G   +  H ++ E +   +I  ++ +G         
Sbjct: 357 EVL----SHAKGRTIAVLGDMGELGSDEKKLHHEVGEAVGENHIHTLFAAGELAKEYAAG 412

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + +HY E  + +   + S + +GD ++VK+S+   F +++  L E
Sbjct: 413 AAEKSSDVDIHYFEDRETMTQELLSYVKEGDTILVKASHFMEFPKVVEALSE 464


>gi|300938481|ref|ZP_07153221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
 gi|300456550|gb|EFK20043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 21-1]
          Length = 452

 Score =  267 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L+    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|298293104|ref|YP_003695043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
 gi|296929615|gb|ADH90424.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Starkeya
           novella DSM 506]
          Length = 479

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 203/468 (43%), Positives = 272/468 (58%), Gaps = 4/468 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L  A+ G  IG  P   + G+SID+R++ P + FFAI+G + DGH ++  A  
Sbjct: 6   PLWTPDALAAAVGGTLIG-APARAIGGVSIDTRTLQPGDVFFAIRGDNSDGHAYVGMAAD 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA L VV  D V ++      +  VDDVLGAL     AAR R++A I+ +TGSVGKTTT
Sbjct: 65  RGAALSVVERDRVGTLPE-GAALLAVDDVLGALQAAGRAARGRTRARIVGVTGSVGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L +AL +   T+A   SYNNH GVPL+LARMP    +G+FELGM+H GEI  L  +V
Sbjct: 124 KEALLLALGADGPTHASAASYNNHWGVPLSLARMPASSAYGVFELGMNHAGEIEPLVKMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+AVITTI P H++ F  +E IA AKAEIF G+E  G   LN D+  FE L A + A 
Sbjct: 184 RPHVAVITTIEPVHIAQFPNVEAIADAKAEIFTGVEPGGAAVLNRDNPHFERLAAAARAA 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI+ I  FG++ +A  +L   K  ++ S     + G+++       G H+ QN L  L  
Sbjct: 244 GIQNIVGFGEAADAQARLVCVKLQAQSSTANADIMGETVSFKIGLPGRHIVQNALAVLAA 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A  ALS   P  GRG R    +  GF TLIDESYNANPASM+AA++VL  
Sbjct: 304 ARLVGADLCLAAMALSSLGPPPGRGVRTTLGVKGGFATLIDESYNANPASMRAALAVLGT 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
               G GRR+AVLGDM E+G   ++ H       +  +   V+ +G  + AL +ALP + 
Sbjct: 364 APVEGRGRRLAVLGDMLELGPRGEAMHA--DIAPAAASADLVFCAGPLMRALWEALPENR 421

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              ++     L   +   L  GDVV+VK SN      L   L+E FPA
Sbjct: 422 RGAWAPDARALLPLVAERLRGGDVVMVKGSNGSRMGPLARALVERFPA 469


>gi|126741291|ref|ZP_01756969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717609|gb|EBA14333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. SK209-2-6]
          Length = 466

 Score =  267 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 171/466 (36%), Positives = 260/466 (55%), Gaps = 8/466 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G +IG      V+GISID+R++   + F A+K    DGH+F+  A
Sbjct: 1   MSALWTSQEAAVATAGQAIG---DWQVDGISIDTRTLEAGDLFVALKAVR-DGHEFVSQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V         +   P+  V+DV  AL  L  AAR R+ A ++A+TGSVGKT
Sbjct: 57  LEKGAGAALVTH--RPDDVAEDAPLLIVEDVQAALEALGQAARARTSARVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A + SYNNH GVPLTLARMP + +F + E+GM+H GEI  L  
Sbjct: 115 STKEMLATMLADQGRTHAAVASYNNHWGVPLTLARMPRETEFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D +  ++LK ++ 
Sbjct: 175 QARPHVAMVTTVAAVHLEAFDDVAGIAREKAAIMEGLEPGGVAVLNGDIAEAQVLKEEAE 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG++ ++         ++L + +   E +  +V++ GK +E+    +G H A N L  L
Sbjct: 235 RLGVQHLWF--GESGQGYRLLETRLEGEHTLAQVEIDGKPLELRIQSLGAHFAMNALGAL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L  D   A + L+++ P +GRG R    +  G   ++D+SYNANP SM AA+ VL
Sbjct: 293 VCVAGLGGDAQRAAQVLALWSPVKGRGARVEVPVAGGKILILDDSYNANPTSMAAALEVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +GR+IA LGDM E+G      H  +A++ ++ +I  +   G  +  L  ALP 
Sbjct: 353 AATPNPEKGRKIAYLGDMGELGPKEAELHRGMADLKAVSDIDCIHCIGPLMANLHAALPE 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    +  T       +   L  GD+V+ K S S G  ++++ + E
Sbjct: 413 ARRGKHYATSSDALPDLAGQLSCGDIVLAKGSLSTGLGKIVDGIRE 458


>gi|242371573|ref|ZP_04817147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242350725|gb|EES42326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 451

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 199/461 (43%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH FI  A++ GA
Sbjct: 5   TLQQIQNWISCEIDEQYLSRSIKGVTIDSRAIEKDMLFIPFKGENVDGHRFIDQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                          +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  VASFSEK-GTELSEDVEGPIIWVEDTLQALQDLAKAYLKHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+        +     + 
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLTPHVKQIQQAKL- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G               +E     +         V   +G H  +N  + + +   
Sbjct: 243 --ISVGLGDANSLVCHVDDVETEGIGFTINND---ESYVLPILGIHNMKNAAIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     T  + +      +  G R          T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLPYATIKENIRH---VQLTGMRMERHQTDDNVTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
             EGR+I +L D+ E+G  SQ  H ++   L   +I  ++  G     + +     +   
Sbjct: 353 --EGRKILILADVLELGTNSQQMHEEVGTYLDGKSIDILFTYGTEAEYIFNTGQSYVETA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +    L   +++ + + D ++VK S       ++  L+
Sbjct: 411 KHFDDKSELIKELKAIVKENDKILVKGSRGMKLEEVVEALI 451


>gi|323439202|gb|EGA96929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus O11]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   KG + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  ++D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQR-GTPIDENVSGPIIWIEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCSVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIEVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|301026106|ref|ZP_07189581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331671605|ref|ZP_08372403.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
 gi|300395677|gb|EFJ79215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 69-1]
 gi|331071450|gb|EGI42807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA280]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|293417962|ref|ZP_06660584.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
 gi|291430680|gb|EFF03678.1| hypothetical protein ECDG_02882 [Escherichia coli B185]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRQAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|253682043|ref|ZP_04862840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
 gi|253561755|gb|EES91207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum D str. 1873]
          Length = 455

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 218/465 (46%), Gaps = 15/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++AI G           N +S D+R I     F A+KG +++ +D+I+ A +K
Sbjct: 3   LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINEDSIFIALKGDNFNANDYIVEASKK 62

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+      +    +  V  V +   AL  LA   R +    +I ITGS GKT+T
Sbjct: 63  GANLCIVDEIKFNENDLQKNTSVILVKNTRKALLDLAELYRSKLNIKVIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   ALSS  K +   G++NN IG+PL +  +    D  + E+GMS   EI  L  + 
Sbjct: 123 KDLTAAALSSKFKVFKTQGNFNNEIGLPLMIFNLDNTYDIAVLEMGMSDFSEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+IT I  +H+ N    E I  AK EI +   +   + +N ++   + + +  + +
Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNEDSILIVNNENDLLKDISSDDYKV 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S G ++   ++              V    K+ +      G H   N L+ +  
Sbjct: 243 -----ISIGFNEGVTYKATDIITDENHIEFTVCHNNKNEKFNIPVPGKHNILNSLLAIAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  + D   + +                +    FT++D+ YNA+P SMKAAI V++ 
Sbjct: 298 GRVLNIEYDKLKEGIKNLS----VTSMRLDIVKGKKFTIVDDCYNASPDSMKAAIDVMNT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I+   +   IAVLG M E+G  S  FH ++AE  +  NI  +   G    A K+   ++ 
Sbjct: 354 ITGKRK---IAVLGTMKELGVDSYKFHKEVAEYANSKNIDLLITVGEFNEAYKEGFNKNS 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ET++    F  +++   D+++VK+S S  F  ++N L ++
Sbjct: 411 K--QFETIEDAAEFTTNNINKDDIILVKASRSMKFEYIVNKLKDK 453


>gi|330684794|gb|EGG96487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 453

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 132/462 (28%), Positives = 204/462 (44%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKAWIDCEIDEQYLNRSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D+  S      P+  VDD L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFYQKDVSLSENIEG-PIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLNTEFKVKKTQGNYNNEIGMPLTILDLDKDTDISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKPNGTFIYDGDEPLLKPHVEQIQQAN-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G  +         ++   +         +  E+   GI       + + +G    
Sbjct: 242 -CISIGLEQGNSLVCSVNEEIDTEGIAFTINHQQQYELPILGIHNMKNAAIAIAIGQELG 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L+ +              +  G R      +   T+I+++YNA+P SMKAAI  LS +  
Sbjct: 301 LSYETIQH-----NIKRVKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM-- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GR+I VLGD+ E+G+ SQS H ++   L    I  +   G     + +   + +   
Sbjct: 354 --NGRKIIVLGDVLELGDNSQSMHEEVGSYLQNKQIDQLITFGSEATFIYNTGKQYVDEA 411

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           H+    D L   I   +   D V++K S       +++ L++
Sbjct: 412 HHFNDKDKLISHITQIVQPEDKVLIKGSRGMKLEEVVDALIK 453


>gi|157147490|ref|YP_001454809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084695|gb|ABV14373.1| hypothetical protein CKO_03289 [Citrobacter koseri ATCC BAA-895]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 213/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF  +A
Sbjct: 1   MISV-TLSQLAGILHGELQG--ADLTIDAVTTDTRKVTPGCLFVALKGERFDAHDFADNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V+  +        +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KEGGAGALLVSRPL-----DCDLPQLIVKDTRLAFGELAAWVRAQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLNNDYDYAVIELGANHQGEIAWTVG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL   G   +N D++ +   +    
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPVNGIAIMNADNNDWLNWQGIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q     ++V+    G H   N L   
Sbjct: 233 DRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGDIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    +   N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLDAIKTGLANLKAVPGRLFPIQLNDN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+ +A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDSVLSTGKLSQAIGNA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   + + + +  +  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKSALVARLNTLIAEHQIITILVKGSRSAAMEEVVRALQE 448


>gi|324112501|gb|EGC06478.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia fergusonii B253]
          Length = 452

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|293408177|ref|ZP_06652017.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291472428|gb|EFF14910.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 452

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|154252859|ref|YP_001413683.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
 gi|154156809|gb|ABS64026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Parvibaculum lavamentivorans DS-1]
          Length = 479

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 194/466 (41%), Positives = 269/466 (57%), Gaps = 5/466 (1%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ PLWT  D+L A  G + G       +G+SIDSR++   + F AI G + DGH ++  
Sbjct: 1   MSAPLWTKEDVLAATGGKAEGAA--WSASGVSIDSRTLEAGDLFVAIIGENSDGHAYVEG 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++KGA   +V+    A   +   P+  V D L ALN L  AAR R+KA ++A+TGSVGK
Sbjct: 59  ALKKGAAAAIVSAPTEAMRAAG--PLVIVTDTLAALNALGRAARARTKAKVVAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L + LS    T+A   SYNN  GVPL+LARMP    FGIFE+GM+H GEI  L+
Sbjct: 117 TGTKEALKLILSEQGATHASAASYNNLWGVPLSLARMPAATRFGIFEVGMNHPGEITPLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV P +++ITT+   H+  F  +E+IA AK EIF+GL+K G   LN D+  +E L+AK+
Sbjct: 177 KLVEPFVSLITTVEAVHMEFFDSVEQIADAKGEIFDGLQKGGVAILNRDNPHYERLRAKA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G   I SFG+ + AD +L K     + S +   + G+ +       G H+  N L  
Sbjct: 237 EKSGAGRIISFGEHEEADARLEKAALKEDCSCVSATICGQKVTYKLAVPGRHIVMNSLAM 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L AD+  A  A++     +GRG+R+  +   G FTL+DESYNANP SM+AA+  
Sbjct: 297 LACVHALEADLAMAALAMASLKAPKGRGERHIVSAPLGQFTLVDESYNANPVSMRAALDA 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +  P G GRRIAV+GDM E+GE S   H  LA+ +    I  V+  G H+  L  ALP
Sbjct: 357 LGRAKPEGNGRRIAVMGDMLEIGETSIEMHRGLADAVREAGIDLVFACGPHMRELYKALP 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +    Y+ET   L   ++ ++  GDVV+VK S       L++LL 
Sbjct: 417 AAAQGAYAETSAELGPLLRDAVEPGDVVMVKGSLGSRMGPLVDLLR 462


>gi|289550301|ref|YP_003471205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289179833|gb|ADC87078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 452

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 206/466 (44%), Gaps = 15/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   I            + G++IDSR++ PQ  F   KG H DGH F+  +
Sbjct: 1   MIEV-TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHRFVKQS 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q GA      T           P+  V D L AL +LA A     +  +IA+TGS GKT
Sbjct: 60  IQDGAAAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L +  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ 
Sbjct: 120 TTKDMIESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSS 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVIT I  +H+ +      IA AK+EI  GL+  G    + D+   +   A+  
Sbjct: 180 IAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    S G  ++  +        ++     +         +          NM    
Sbjct: 240 HAKL---ISVGLEQHNTYVCTIDSNQNDGIAFNINNTEHYELPIL------GVHNMRNAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +++      +           +  G R    + +   T+I+++YNA+P SMKA+I  L
Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419
           S +    EGR+I +L D  E+G+ SQ  H ++ E L   NI  ++  G     +     P
Sbjct: 351 SNM----EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQP 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              H  + E+ + +   ++  LV GD V+VK S       ++N ++
Sbjct: 407 YVSHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|222031917|emb|CAP74655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LF82]
 gi|312944692|gb|ADR25519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O83:H1 str. NRG 857C]
          Length = 452

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|2177096|gb|AAB60788.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding Enzyme [Escherichia coli]
          Length = 452

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALTAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|329298855|ref|ZP_08256191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Plautia
           stali symbiont]
          Length = 453

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 209/469 (44%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T   L +   G   G      +  ++ D+R +     F A+ G  +D +DF   A
Sbjct: 1   MIPV-TLQILAEISGGQLHG--SDLTIADVTTDTRKVTLGSLFVALVGERFDAYDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++VN  +      + +P   V D   A  +L    R ++KA ++ +TGS GKT
Sbjct: 58  IASGAQALLVNRRLA-----VDVPQVVVADTRIAFGQLGAWVRQQAKARVVGLTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+     + + E+G +H GEI + T+
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDYGVPMTLLRLTPQHAYAVIEMGANHQGEIAYTTN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D +     +++  
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFGGLPVHGTAIINADSNDLPNWQSQ-F 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  I   +S     +A+F+       ++ +   +      + V     G H   N L   
Sbjct: 232 ADKILWRFSPQPMADAEFRASDIVLRADATLFTLHTPRGDIAVELPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L    P  GR    R A N     L+D+SYNAN  SM AA  VL
Sbjct: 292 ALALSVDAPLTAIQSGLKTLQPVPGRLFPIRLAGN---QLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G+ +++ H  + E      I  V  +G     + +    
Sbjct: 349 GDMP----GFRVMVVGDMGELGDEAEACHRQVGEAAKAAGIDCVLSTGSFSHLISE---S 401

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
           S    +  +   L   +++ L       ++VK S S    +++  L E+
Sbjct: 402 SGRGEHFASKAELTERLRTLLSQHADITILVKGSRSAAMEQVVQSLQEK 450


>gi|218703346|ref|YP_002410865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|293403158|ref|ZP_06647255.1| murF [Escherichia coli FVEC1412]
 gi|298378688|ref|ZP_06988572.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300900883|ref|ZP_07119020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
 gi|218430443|emb|CAR11309.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli UMN026]
 gi|291430073|gb|EFF03087.1| murF [Escherichia coli FVEC1412]
 gi|298281022|gb|EFI22523.1| hypothetical protein ECFG_03651 [Escherichia coli FVEC1302]
 gi|300355647|gb|EFJ71517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 198-1]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + DF + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDFAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   I+S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALIARIKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|26246019|ref|NP_752058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli CFT073]
 gi|227885009|ref|ZP_04002814.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300981123|ref|ZP_07175369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|301048478|ref|ZP_07195503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|26106416|gb|AAN78602.1|AE016755_102 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli CFT073]
 gi|227837838|gb|EEJ48304.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 83972]
 gi|300299664|gb|EFJ56049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 185-1]
 gi|300409025|gb|EFJ92563.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 45-1]
 gi|307551930|gb|ADN44705.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ABU 83972]
 gi|315294719|gb|EFU54062.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 153-1]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGCHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|302389512|ref|YP_003825333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200140|gb|ADL07710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 461

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 140/471 (29%), Positives = 209/471 (44%), Gaps = 19/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL T+ ++ +A  G        G V G+S DSRS+   + F  + G  +DGHDFI +A
Sbjct: 1   MKPL-TYEEVAKATGGRVEKSF-SGEVLGVSTDSRSLKHGDLFVPLVGAKFDGHDFIKNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            + GA   +   D    + +L++  PV  VDD   AL +LA   R       +AITGSVG
Sbjct: 59  FEAGASATLCAEDKRDRVLNLTLEKPVIFVDDTQNALLRLAGFYRSFFSIPFVAITGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEM+   L+   +     G++NN IG+PLTL R+  D   G+ E+GMS  GEI  L
Sbjct: 119 KTTTKEMIAAVLTRRYRVLKNEGNFNNEIGLPLTLFRL-EDHQVGVVEMGMSGFGEISRL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +V+PH+AVIT I  +H+      E IA AK EI E L K   + LN D          
Sbjct: 178 SAIVKPHVAVITNIGVSHIEKLGSRENIARAKLEIIEPLSKDDLVVLNADSPELYA---- 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                      FG  K             +    +V        V     G H   N L 
Sbjct: 234 KRGTLTPRTVYFGIEKGDIRATDIVSMGRDGVIFKVTGDIPEFSVEIPLAGTHNVYNALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       +D   + L    P      R           +ID+ YNA+P SMKAA++
Sbjct: 294 AIAVGLEFGLSIDEIRRGLMELKP---TKMRLEFKKTPFGAVVIDDCYNASPDSMKAALN 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL ++      R++A+LGDM E+G+ +   H ++    +      +   G H   L    
Sbjct: 351 VLREL--GEGRRKVAILGDMLELGDYAVKAHEEIGRYAA-GKTDILICIGNHAEDLAKGA 407

Query: 419 PRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +      +H   T       +   + D D+++VK+S       +++ L+
Sbjct: 408 TEAGLGPRFIHTFSTNKEAIDRLGELVEDCDIILVKASRGMKLEEIVDFLV 458


>gi|94501900|ref|ZP_01308410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
 gi|94425953|gb|EAT10951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanobacter sp. RED65]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 139/467 (29%), Positives = 215/467 (46%), Gaps = 20/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       D+   +     G         +S D+R++ P + F A+ G  +DGH+++  A
Sbjct: 1   MIGAIRLADVADFLDAKHRG--ANIPFQSVSTDTRTLQPGDLFVALIGDRFDGHEYVQQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  V+++  M      +++P   V D   AL +L +  RLR +  ++AITGS GKT
Sbjct: 59  IEKGASAVLISKRM-----EVTVPFLQVADTTEALGRLGLYNRLRFENPVVAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K M+   L    +     G+ NNHIG PLTL R+    D+ + ELG S LGEI +   
Sbjct: 114 TVKGMMATLLRQQNEVLVTRGNLNNHIGAPLTLLRLSDSDDYAVIELGASGLGEIAYTAE 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP ++++T    AHL  F  +E I   K EI + L   G   LN D  +FE  + +  
Sbjct: 174 LARPTVSILTNAGNAHLEGFGSVEGIVKTKGEIIDALADDGVAVLNADSPYFEEWQKR-- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + + SFG++ +AD +    +  +         +  +  +V    +G H   N L  
Sbjct: 232 -AGSRRVISFGETLSADIRATDIQSNANGCCAFTLHINDEQSQVQLSVMGKHNVFNALAC 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L       +  L +F   EGR    +         +ID+SYNANPAS++AA+ V
Sbjct: 291 AAACVALDMPPKLIVSGLQLFEGVEGRLLEKQGLNG---SRIIDDSYNANPASVRAAVDV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S H     I VLGDM E+G  +   H ++        I   +  G       DA  
Sbjct: 348 LASRSSHT----IFVLGDMAELGVETHLAHAEVGAYAREAGIDEFFALGEFSRKAADAFG 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   H+  + D L  F+   L     V+VK S S    R++N ++E
Sbjct: 404 DN--AHWFASHDNLIRFLTKKLNKDVTVLVKGSRSSHMDRVVNDIVE 448


>gi|110640299|ref|YP_668027.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 536]
 gi|191174610|ref|ZP_03036101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300984508|ref|ZP_07177000.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|110341891|gb|ABG68128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Escherichia
           coli 536]
 gi|190905112|gb|EDV64760.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli F11]
 gi|300306677|gb|EFJ61197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 200-1]
 gi|324012249|gb|EGB81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 60-1]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H  + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|260437322|ref|ZP_05791138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810234|gb|EFF69439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 456

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 15/463 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A +G  +       +  +S DS SI     F  I G   D H FI  A+  GA 
Sbjct: 6   VRDIVKATKGEVLCGDMNIPIENVSTDSNSIKENSLFVPIIGERVDAHTFIDSAIANGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+ +        + ++P   V +   AL ++            I +TGSVGKTTTKEM+
Sbjct: 66  AVLTSE---HDEMTGNVPYIRVSNTTMALQEIGKYYGKLMIMPKIGVTGSVGKTTTKEMI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  K +   G+ N+ IGVPLTL +M  D    + E+GMS  GE+  L+ LV    
Sbjct: 123 ACALSAGYKVFKTSGNSNSQIGVPLTLLKMSPDDQIAVIEMGMSMRGEMSRLSELVELDD 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  +H+      + I   K  I + +     I     D     +  K  +     
Sbjct: 183 AVITNIGVSHIEQLKTRDGICEEKFHIQDAIHAKDGIVFINGDD---AILNKHKSELRHR 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           I +FG   + D+     K  +    +        S +   + +G H  +N L+ + +   
Sbjct: 240 IITFGLGNDNDYFATNIKVKNGGVDFTVNIKNKGSYDARLNVLGEHNVRNALVAIAVAER 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +V  AIKAL+ +          +   +    T+ID+SYNA+P SMKA I VL     
Sbjct: 300 HGIEVTEAIKALAGYEGV----SMRQQITDVNGVTIIDDSYNASPDSMKAGIDVLCDY-- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           +  GR+IAVL DM E+G+ S  +H ++   ++   I  + L G     + D    S    
Sbjct: 354 NNNGRKIAVLADMLELGDKSADYHKEVGGYMAEKKIDELILFGTMAANIGDGFNGS--YK 411

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  + +  ++  +L  GD ++ K S        ++ L E +
Sbjct: 412 LFKKREEINEYLLKNLKSGDAILFKGSRGMKLNECVDFLKENY 454


>gi|323165969|gb|EFZ51749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei 53G]
          Length = 452

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A ++     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLNAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|291549121|emb|CBL25383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus torques L2-14]
          Length = 461

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 206/472 (43%), Gaps = 24/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V+ ++IDSR +     F AIKG   DGH FI   ++
Sbjct: 4   MTLSEIADACCGIYYGDPAFLDREVSSVAIDSRKVVKDTLFVAIKGVRVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +   D    +G +  P   V     AL  LA   R      ++ ITGSVGKT+T
Sbjct: 64  AGALCSLSEQD----LGDVDYPYIRVSSCTEALKDLAEHYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+SH G+++ L  + 
Sbjct: 120 KEMIASVLSEKYNVLKTEGNFNNEIGLPLTVFNIREEHEVAVLEMGISHFGDMKPLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I  AHL N    + I   K+ + + +   G++  N DD   +   ++    
Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKSSMTDYMNPKGSVIFNGDDDKLKSYTSRDGRT 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +              ++  + ++ E               G HM  N L  + +
Sbjct: 240 PVYFGLTSS---CPFHVENIERKGLKGTYAEFVTPTSRFHAHISIPGDHMIYNALAGVAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D +   + +    P  GR            +T+ID+ YNANPASMK+++ VL+ 
Sbjct: 297 GYALGMDNEEIARGIEKLVPIAGRNNLIEAK----HYTIIDDCYNANPASMKSSLDVLAY 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
                    +A+LGDM E+G    + H ++    +  N   +   G     + +A     
Sbjct: 353 ADTRK----VAILGDMGELGADELAMHREVGAYAAFKNTDVLVCIGALSKDMAEAAKETV 408

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +++ V + +T +  +  ++  L D D +++K+S+   F  ++  L EE
Sbjct: 409 LATEKNMKVFHFDTKEDFYQNMRQILKDNDTILIKASHFMEFPEIVKKLSEE 460


>gi|254037501|ref|ZP_04871578.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
 gi|226840607|gb|EEH72609.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia sp. 1_1_43]
          Length = 452

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL K G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPKNGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|161619383|ref|YP_001593270.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
 gi|161336194|gb|ABX62499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brucella canis ATCC 23365]
          Length = 481

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 221/472 (46%), Positives = 302/472 (63%), Gaps = 2/472 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT   +++ ++G   G +P G V GISIDSR++ P EAFFAIKG  +DGHDF   A+
Sbjct: 8   DWLWTSDAMVEVMEGRPFGNLPAG-VTGISIDSRALKPGEAFFAIKGEQFDGHDFATAAM 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GAGL+VV    + + G+  +P+  V+DVL AL +L +AAR RSKA IIA+TGSVGKTT
Sbjct: 67  AAGAGLLVVAEHRLPAFGNTKVPMIVVEDVLEALIRLGIAARARSKAQIIAVTGSVGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS + K +A   S+NNH GVPLTLARMP DVD+G+FE+GM+H GEIR L  +
Sbjct: 127 TKEALRHVLSDVGKVHASAASFNNHWGVPLTLARMPADVDYGVFEIGMNHHGEIRPLVKM 186

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+A+IT IAPAHL +F+ +EEIA AKAEIFEG+   G   LN DD  F  L+  +  
Sbjct: 187 VRPHVALITLIAPAHLGHFANLEEIAVAKAEIFEGIVPGGYALLNRDDKRFRQLQELAEK 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G++ I +FG++  AD++LR  K     S M V++      V     G H+ QNML  LG
Sbjct: 247 AGVEHIATFGENARADYRLRDVKLHPTCSCMTVKIGTHEAAVKVGIPGRHVVQNMLAVLG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++ AD+   + A++    + GRG R+     +G FTLIDESYNANP SM+AA+S+L 
Sbjct: 307 AAHLVGADIAKVMMAMATLSAQGGRGARHVLQHPEGAFTLIDESYNANPTSMRAALSLLH 366

Query: 362 QISPHG-EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              P G  GRRIAVLGDM E+G  S   H DLA  +    ++ +++ G  +  LK+ALP 
Sbjct: 367 STVPEGSRGRRIAVLGDMVELGRQSCKLHADLARPIVDAEVNTLFIGGSEMSVLKNALPV 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            I   Y ++ D L   +  ++  G VV+VKSSN  GF +++  L+ +FP ++
Sbjct: 427 EIQTEYRQSTDELLPLVVKAVRPGYVVMVKSSNRTGFSKIVKALIAQFPPVE 478


>gi|323975750|gb|EGB70846.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TW10509]
          Length = 452

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|74310705|ref|YP_309124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sonnei Ss046]
 gi|82542690|ref|YP_406637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii Sb227]
 gi|157158796|ref|YP_001461256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|157159557|ref|YP_001456875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|170021558|ref|YP_001726512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ATCC 8739]
 gi|187733976|ref|YP_001878896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188493824|ref|ZP_03001094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|191167759|ref|ZP_03029566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|193065891|ref|ZP_03046952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|193070826|ref|ZP_03051759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194429369|ref|ZP_03061894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194439406|ref|ZP_03071483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209917279|ref|YP_002291363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli SE11]
 gi|218552669|ref|YP_002385582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|218693555|ref|YP_002401222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|253774884|ref|YP_003037715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160208|ref|YP_003043316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|256020076|ref|ZP_05433941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella sp. D9]
 gi|260842322|ref|YP_003220100.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|260853299|ref|YP_003227190.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|260866239|ref|YP_003232641.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|293476746|ref|ZP_06665154.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300816124|ref|ZP_07096347.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300821909|ref|ZP_07102053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300905495|ref|ZP_07123259.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300919641|ref|ZP_07136132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300923132|ref|ZP_07139192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300931787|ref|ZP_07147087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|301303814|ref|ZP_07209934.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|301330133|ref|ZP_07222802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|307311463|ref|ZP_07591105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|309796076|ref|ZP_07690488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|312970180|ref|ZP_07784362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|331661460|ref|ZP_08362384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331666323|ref|ZP_08367204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331680659|ref|ZP_08381318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332281226|ref|ZP_08393639.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|73854182|gb|AAZ86889.1| D-alanine:D-alanine-adding enzyme [Shigella sonnei Ss046]
 gi|81244101|gb|ABB64809.1| D-alanine:D-alanine-adding enzyme [Shigella boydii Sb227]
 gi|157065237|gb|ABV04492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli HS]
 gi|157080826|gb|ABV20534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E24377A]
 gi|169756486|gb|ACA79185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli ATCC 8739]
 gi|187430968|gb|ACD10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii CDC 3083-94]
 gi|188489023|gb|EDU64126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 53638]
 gi|190902185|gb|EDV61927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B7A]
 gi|192926478|gb|EDV81111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E22]
 gi|192955856|gb|EDV86326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E110019]
 gi|194412589|gb|EDX28886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli B171]
 gi|194421665|gb|EDX37675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 101-1]
 gi|209910538|dbj|BAG75612.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE11]
 gi|218350287|emb|CAU95970.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli 55989]
 gi|218359437|emb|CAQ96975.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI1]
 gi|242375922|emb|CAQ30603.1| D-alanyl-D-alanine-adding enzyme [Escherichia coli BL21(DE3)]
 gi|253325928|gb|ACT30530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972109|gb|ACT37780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli B str. REL606]
 gi|253976318|gb|ACT41988.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli BL21(DE3)]
 gi|257751948|dbj|BAI23450.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O26:H11 str. 11368]
 gi|257757469|dbj|BAI28966.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O103:H2 str. 12009]
 gi|257762595|dbj|BAI34090.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli O111:H- str. 11128]
 gi|284919866|emb|CBG32921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Escherichia coli 042]
 gi|291321199|gb|EFE60641.1| hypothetical protein ECCG_03069 [Escherichia coli B088]
 gi|300402645|gb|EFJ86183.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 84-1]
 gi|300413281|gb|EFJ96591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 115-1]
 gi|300420587|gb|EFK03898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 182-1]
 gi|300460447|gb|EFK23940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 187-1]
 gi|300525509|gb|EFK46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 119-7]
 gi|300531331|gb|EFK52393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 107-1]
 gi|300840941|gb|EFK68701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 124-1]
 gi|300843880|gb|EFK71640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 78-1]
 gi|306908442|gb|EFN38940.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli W]
 gi|308120318|gb|EFO57580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 145-7]
 gi|310337678|gb|EFQ02789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1827-70]
 gi|315059309|gb|ADT73636.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli W]
 gi|315253160|gb|EFU33128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 85-1]
 gi|320172823|gb|EFW48055.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           dysenteriae CDC 74-1112]
 gi|320183627|gb|EFW58470.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           flexneri CDC 796-83]
 gi|320200395|gb|EFW74981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli EC4100B]
 gi|323157847|gb|EFZ43950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli EPECa14]
 gi|323160116|gb|EFZ46077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli E128010]
 gi|323171249|gb|EFZ56897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli LT-68]
 gi|323176394|gb|EFZ61986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1180]
 gi|323181783|gb|EFZ67196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 1357]
 gi|323380133|gb|ADX52401.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli KO11]
 gi|323945715|gb|EGB41763.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H120]
 gi|323960032|gb|EGB55678.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H489]
 gi|323970758|gb|EGB66012.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli TA007]
 gi|324017753|gb|EGB86972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 117-3]
 gi|324118436|gb|EGC12330.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1167]
 gi|331061375|gb|EGI33338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA143]
 gi|331066534|gb|EGI38411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA271]
 gi|331072122|gb|EGI43458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H591]
 gi|332095377|gb|EGJ00400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 5216-82]
 gi|332098874|gb|EGJ03825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella boydii 3594-74]
 gi|332103578|gb|EGJ06924.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Shigella
           sp. D9]
 gi|332341418|gb|AEE54752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Escherichia coli UMNK88]
          Length = 452

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|331681471|ref|ZP_08382108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
 gi|331081692|gb|EGI52853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H299]
          Length = 452

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 139/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++VN  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVNRPL-----DIDLPQVIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ HI + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|331269349|ref|YP_004395841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
 gi|329125899|gb|AEB75844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           botulinum BKT015925]
          Length = 455

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 215/465 (46%), Gaps = 15/465 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L  F ++++AI G           N +S D+R I     F A+KG +++ +++I+ A +K
Sbjct: 3   LLKFEEIVEAIHGKIHINSNCHKYNSVSTDTRKINENSIFVALKGDNFNANNYIVEASKK 62

Query: 64  GAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L +V+           +  V  V++   AL  LA   R +    II ITGS GKT+T
Sbjct: 63  GANLCIVDEIKFNEGDLQENTSVILVENTRKALLDLAELYRSKLNIKIIGITGSTGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++   AL S  K +   G++NN IG+PL +  +   +D  + E+GMS   EI  L  + 
Sbjct: 123 KDLTAAALGSKFKVFKTQGNFNNEIGLPLMIFNLDNTLDVAVLEMGMSDFSEIHRLAKVA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP IA+IT I  +H+ N    E I  AK EI +   K   + +N ++   + +     + 
Sbjct: 183 RPDIALITNIGISHIENLKTRENILKAKMEITDFFNKDSILIVNNENDLLKDI-----SS 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I + G ++   ++              V    ++ +      G H   N L+ +  
Sbjct: 238 NDYNIINIGFNEGVAYKATDILTDENHIEFTVCHNDENEKFNIPVPGKHNILNSLLAIAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  + D     +                +    FT++D+ YNA+P SM+AAI V++ 
Sbjct: 298 GRVLNIEYDKLKDGIKNLS----VTSMRLDIVKGEKFTIVDDCYNASPDSMRAAIDVMNT 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I    +   IAVLG M E+G  S  FH ++AE     N+  +   G    A K+   ++ 
Sbjct: 354 IKGKRK---IAVLGTMKELGVDSYKFHKEVAEYADSKNVDLLITVGEFNEAYKEGFNKTS 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ET++    FI +++   D+V+VK+S S  F  ++N L ++
Sbjct: 411 K--QFETIEDAAEFITNNINKDDIVLVKASRSMKFEYIVNKLKDK 453


>gi|325955968|ref|YP_004286578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|325332533|gb|ADZ06441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus 30SC]
 gi|327182800|gb|AEA31247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 455

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +            +I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K   +     
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
           +G RIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL       H+
Sbjct: 353 DGCRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455


>gi|323964818|gb|EGB60285.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli M863]
 gi|327255064|gb|EGE66667.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli STEC_7v]
          Length = 452

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|150016457|ref|YP_001308711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902922|gb|ABR33755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 450

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 118/462 (25%), Positives = 201/462 (43%), Gaps = 16/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A+ G  I    +G  N IS D+R I     F A+KG +++G+D+ + A++KG
Sbjct: 3   LNLAEIIKAVDGEIIVKNNEGIFNKISTDTRKIQENNLFIALKGENFNGNDYTIQAIEKG 62

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +++++              +  V D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 63  ASIIIIDDVKFKIEELKNRGTIIKVKDTKEALGDLARFYRKKIGVKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   K +   G++NN IG+PL +  +  D D  + E+GMS+ GEI  L  +  
Sbjct: 123 DLVAAFLSGKYKVFKTQGNFNNEIGLPLMIFELSKDYDIAVLEMGMSNFGEINKLASIAL 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +  IT I  AH+      E I   K  I +  E   ++ +N ++   + +        
Sbjct: 183 PDVGAITNIGVAHIEYLKTRENILKEKMSITDFFENKNSLIVNCENDMLKTIVE----CD 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +   G     +   +  K  SE +  + V    ++     + +G H   N L+ + I
Sbjct: 239 KFNLERVGYDSTYNLYSKNIKLTSENTSFDVVTDDNENYRFTLNMVGEHNVLNALIGIQI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   K                  +N+  FT+I++SYNANP SMKAA+ VL  
Sbjct: 299 ARNFGLTFEEMEKG----LGNFNATSMRLEVINKDKFTIINDSYNANPDSMKAALEVLKN 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S   +   IAVLG M E+G+ ++  HI + E         +  +G      K       
Sbjct: 355 YSGSRK---IAVLGTMGELGDYAEEAHIQVGEFAKD-KADILLTTGEFKEYYKKGF--GE 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                E+   L   +   +   D +++K+S S  F  +   L
Sbjct: 409 RTMVFESKQELMQRLTDMIKVNDTILIKASRSAKFEEITKYL 450


>gi|325125142|gb|ADY84472.1| D-ala-d-ala adding enzyme [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 455

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ QA+   S     +  +  ++ DSR I+    F  IKG   DGHDF+  A++ GA 
Sbjct: 5   LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  V D L A+  LA     +   T+++ITGS GKTTTK+M+
Sbjct: 63  ATLWEAGN--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   ++IA AK EI + L++ G    N D+     L A+  A   + 
Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLPQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG + +        +     S+   ++ G   E     IG H   N +  + +    
Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L+ F P   R              ++ + YN+NP ++KA  +   Q+   
Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
            +GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      ++
Sbjct: 352 EDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|295108991|emb|CBL22944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Ruminococcus obeum A2-162]
          Length = 456

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 206/472 (43%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L +   G   G        V+ I+ DSR I     F  I G   D H FI 
Sbjct: 1   MKNL-TLRNLTEVCSGTWHGDDALLDREVSAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             + KGA   +   ++         P   +   L A+  +A     + +  +I ITGSVG
Sbjct: 60  DVMAKGALATLSERELS----DADYPYIQITSSLQAVKDIAEFYLQQLQLPVIGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  D    + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLREDDQIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   VIT I   HL N    + +  AK EIF  +  +G I LN DD     +   
Sbjct: 176 TRIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFRSMLPSGHIVLNGDDDKLATV--- 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      FG     D    +      +     + +   + +V+    G HM  N L
Sbjct: 233 -EGYHGVKPVFFGLDAKRDVYADQIVSRGLKGVSCRIHMGEDAFDVLVPTPGIHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  I    ++   + +       GR K          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGRIYGLTIEEIKRGIESLETIRGRFKMIE----TENFLVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL      GEGRR+A+LGDM E+GE   S H ++ E  +   I      G   L + +A
Sbjct: 348 DVLHD----GEGRRVAILGDMGELGENEISLHEEVGEHAAKCGIDVCICVGELSLHIAEA 403

Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++     VHY +  + L   +   +  GD ++VK+S+   F  +++ L +
Sbjct: 404 ARKADPDFEVHYEKDRESLLKNLGGYVRKGDTILVKASHFMKFEEVVDALEK 455


>gi|238784572|ref|ZP_04628579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714538|gb|EEQ06543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia bercovieri ATCC 43970]
          Length = 450

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 134/469 (28%), Positives = 210/469 (44%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     +     G          +  ++ID+R +     F A+KG  +DGHDF   A
Sbjct: 1   MSELLNAELIATDKGG------NHLEITEVTIDTRKVTAGCLFVALKGERFDGHDFAEDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V+  ++     +  P   V D   AL + A   R +  A ++A+TGS GKT
Sbjct: 55  VTAGAGALLVSKRLL-----VGAPQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMTAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        +++ DF     +   + +   +     ++ +     G H   N L   
Sbjct: 230 NKRVWRFAP-QAAEDIDFYATDVQITPQATHFTLHSPFGTVAIELPLPGRHNIANGLAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + AD+    + L       GR    + A       L+D++YNAN  SM AA  VL
Sbjct: 289 ALAMSVGADLAAVRQGLMQLQAVPGRLFPIQLAAG---KLLLDDTYNANVGSMTAAAQVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G+ +   H  + E      I  V   G     L DA   
Sbjct: 346 AEMP----GYRVMVVGDMGELGDTAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA--- 398

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S +  + +    L   +   L +  V  V++K S S     ++  L E+
Sbjct: 399 SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMENVVRALQEK 447


>gi|218698509|ref|YP_002406138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
 gi|218368495|emb|CAR16230.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli IAI39]
          Length = 452

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L+    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILNQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFTDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|315498853|ref|YP_004087657.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Asticcacaulis excentricus CB 48]
 gi|315416865|gb|ADU13506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Asticcacaulis excentricus CB 48]
          Length = 462

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 175/469 (37%), Positives = 247/469 (52%), Gaps = 12/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PLWT  +LL+A  G      G        GI+ DSR + P + F A+ G   DGHDF+
Sbjct: 1   MTPLWTGTELLKATGGTFAGLSGDASALHATGITFDSRQVQPGDIFLALSGVR-DGHDFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A  +GA   +    +         P   V DVL AL KL   AR R+ A   A+TGSV
Sbjct: 60  GQAFAQGAVCALTRKPVD------GGPCLMVPDVLKALEKLGAYARDRAPAMRGAVTGSV 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+  +M+  ALS   + ++ + S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  
Sbjct: 114 GKTSVTQMVMAALSRAGRAHSAVKSFNNHIGVPLTLARMPADTERAVFEIGMNHANEITP 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L+ LV P   +ITT+   H  NF  G E +  AKAEIF+GL+  G   LN D+ +F  L 
Sbjct: 174 LSELVEPDAVIITTVGAVHTENFPDGEEGVMKAKAEIFDGLKYGGLAILNADNHWFAELN 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++  +G K    FG+++ AD  L   +    ++ +   L G+ +       G H A N 
Sbjct: 234 ERASEMGAKVQC-FGEAEGADACLISHEVVDGRAQVCATLHGRDIAFTLAHTGKHQALNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   L  D  T + ALS F   +GRG  ++ A+  G  TLIDESYNANP SM A 
Sbjct: 293 LSVLLMCEALKVDTATTLAALSAFEALDGRGAEHQIAVAGGHVTLIDESYNANPISMVAT 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+       GRRIAV+ DM E+G      H  LA  L+   +  V+++G  + AL D
Sbjct: 353 LNALAARRLVTGGRRIAVMTDMLELGPDELKRHAALAPALTAAGVDQVFVAGPLMRALWD 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            LP ++   Y+ T   L   ++++L   D+V++K SN      +   LL
Sbjct: 413 VLPEALRGAYAATAAELLEPLKTALRPNDIVMIKGSNGSKAGLIAKSLL 461


>gi|288819028|ref|YP_003433376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|288788428|dbj|BAI70175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Hydrogenobacter thermophilus TK-6]
 gi|308752612|gb|ADO46095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 436

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 212/465 (45%), Gaps = 30/465 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  +L    +G   G       +G  IDSR +     F A++G  +DGHDF   A
Sbjct: 1   MGEL-SARELASICRGKLYG--ESTTFSGFCIDSREVKEGNVFVALRGGRHDGHDFAQEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V   +    G        VDD L AL ++A+  R      +I + GS GKT
Sbjct: 58  FSRGAVGAIVQRGIKVPKGKF---YVLVDDTLEALRRIALYRRRLFTGRVIGVAGSAGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS I K      +YN+ IG+P ++A    D  F + E+G S  G+++ L  
Sbjct: 115 TTKEMIAFLLSKIGKVCKTPKNYNSQIGLPFSIANFEEDCQFWVVEMGASQKGDVKNLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+ VIT I   HL  F  ++++     EIFE +++     L    S    LK    
Sbjct: 175 LAKPHVRVITAIGEEHLETFGCLDDVIVGNGEIFEDMQERDVAVLPKYVSHCYELK---- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + +FG+    D Q    K   E        Q + + +        + +N L +L
Sbjct: 231 -----NVITFGE--GGDLQATNIKLSKEGIT----FQVEDVSLSLRVPSLAVLENALCSL 279

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++  L  +       L+ F P   R    R       F +ID++YNANP S++ A+  L
Sbjct: 280 GVLKALGYNWKELSHHLANFSPAPQRFHLIRKGS----FLIIDDTYNANPPSVRKALLSL 335

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-LP 419
           S      +G RIA+LGDM E+G +S+++H ++ ++ +   I      G H+    +  L 
Sbjct: 336 SLF----DGYRIALLGDMLELGPMSEAYHREVGKLCAELGIDACIFYGTHMRFAYEECLR 391

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +  ++S + +    ++ S + +G V++VK S       L+  +
Sbjct: 392 HGVLCYHSSSKEEALRYLSSLIREGSVILVKGSRGMKMEDLVREI 436


>gi|294012783|ref|YP_003546243.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
 gi|292676113|dbj|BAI97631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sphingobium
           japonicum UT26S]
          Length = 458

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 171/469 (36%), Positives = 236/469 (50%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G          V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTDLWTSEEIAQATGG---VASAPFAVSGVAFDSREVTGGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+        +++ P   V D   AL  L   +R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSQ-------TIAQPHVLVPDSAAALEALGRTSRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  +     +  + SYNNH+GVPL+L+RMP +  FG+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRVCPGEVHRSVKSYNNHVGVPLSLSRMPRESAFGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L AK
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       I +FG    AD + R+        + +   L G  +       G H   N L
Sbjct: 231 AEKHAA-RILTFGFDPQADVRARETVPAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  L  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM    
Sbjct: 290 AVLATVEALGGDLAAAGLALAEMPGLPGRGQRSVLPVEGGEALLIDESYNANPLSM---A 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L Q+      RRIAVLG M E+G+ S+  H  L E L+   + +  L G  +  L  A
Sbjct: 347 ATLKQLGREQADRRIAVLGGMRELGDRSRELHAGLVEPLTAGQVDYAVLVGEEMDPLAQA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L   +   +          I++ +  GD ++VK SN  G  RL+  L E
Sbjct: 407 LGGVMAFDHVPDAARAIDLIRNEMRAGDAILVKGSNGIGLSRLVAALQE 455


>gi|306815316|ref|ZP_07449465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
 gi|305850978|gb|EFM51433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli NC101]
          Length = 452

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIYVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H  + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHAQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|17547567|ref|NP_520969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ralstonia
           solanacearum GMI1000]
 gi|17429871|emb|CAD16555.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Ralstonia solanacearum GMI1000]
          Length = 482

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 193/471 (40%), Gaps = 16/471 (3%)

Query: 4   LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +    D    +   H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V 
Sbjct: 8   MMHATDAAAWMAGAHLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVA 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  V+V+   V       + V  V D   AL +LA   R R    ++A+TGS GKTT 
Sbjct: 66  RGAAAVLVSRPPVGIPDLSGVAVLTVADTRIALGQLAAGWRRRFPIPVVAVTGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           KEM++   +      A     G+ NN IG+PLTL R+       + ELGM+H GE   L 
Sbjct: 126 KEMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETEVLA 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P +A+I      H      +E +A+  A +   L   G      D +         
Sbjct: 186 AIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDAANGGEYAPLW 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A                         ++   ++V   G         +G H A+N L  
Sbjct: 246 RAAAGTRRV-LDFGIEGGAVSAAVTDTADGQRIDVHAPGLRFSFTLPLLGVHNARNALAA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      +   +ALS F P +GR    +         +ID++YNANP S++AAI  
Sbjct: 305 TACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGHHGGLVIDDTYNANPDSVRAAIDA 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +       R  VLGDM E+G    +FH ++        I  V  +G     + +A  
Sbjct: 362 LATLPA----PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELARHMVEAFG 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 418 GGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 466


>gi|309388989|gb|ADO76869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Halanaerobium
           praevalens DSM 2228]
          Length = 465

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 199/472 (42%), Gaps = 14/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    +++   +   +       V  I IDSR +     F AI G + DGH ++  A
Sbjct: 1   MQTLK-LKEIVAFTKAELLQGNLDLKVKEIVIDSRDVKTGFLFIAIIGQNKDGHQYLKEA 59

Query: 61  VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVG 118
           V+ GA  V+V+ +  A   +  ++ V  V+D   AL  +A   R +     +I ITGS G
Sbjct: 60  VKNGASAVIVDRNSPAIQAAYPNLSVLKVEDTTKALQAIAFNYRHKFDDLKVIGITGSAG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+M+   LS         G+YNN IG+PLTL R+    DF I E+GMS L EI  L
Sbjct: 120 KTTTKDMIFSVLSEKYYCLKTEGNYNNQIGLPLTLLRLDGREDFAILEMGMSGLAEIDLL 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I +IT IA AHL     +E IA AK E+ + L    T  LNYD+ + + +   
Sbjct: 180 AKIAVPEIGIITNIAAAHLEQLGSLENIAQAKKELIDNLTAADTAILNYDNQYTKKIGTN 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S A  I   +  G     +      K  + +     Q +                 N+  
Sbjct: 240 SKAQTIYFGFEKGADARIENYFFNSKTETLKFEFTYQAKNYKFIFN-----KAGKHNLYN 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + I         +        +    R      +    +I++ YNANP S+KAA+ 
Sbjct: 295 ILPALIIAFKYKLKPEEIQKGLLKTKFSSLRMEFIQLKNKARIINDCYNANPLSVKAALD 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL QI    +   IA+L  M E+GE S   H  +    +   I  +   G    A+    
Sbjct: 355 VLEQIKAKRK---IAILASMLELGEKSLKKHQQIGLYAAAKKIDLLITIGPKAQAIATKA 411

Query: 419 P---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +S  V           F+ S +   D++++K S +     +++ L  +
Sbjct: 412 RTKMKSEQVINLANNKECIDFLLSEIKAEDLILIKGSRANKLEEIVDELKSK 463


>gi|91209150|ref|YP_539136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UTI89]
 gi|117622372|ref|YP_851285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli APEC O1]
 gi|218557026|ref|YP_002389939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|237704235|ref|ZP_04534716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|331661132|ref|ZP_08362064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
 gi|91070724|gb|ABE05605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli UTI89]
 gi|115511496|gb|ABI99570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Escherichia
           coli APEC O1]
 gi|218363795|emb|CAR01455.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli S88]
 gi|226902147|gb|EEH88406.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Escherichia sp. 3_2_53FAA]
 gi|294489486|gb|ADE88242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli IHE3034]
 gi|307629660|gb|ADN73964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli UM146]
 gi|315285168|gb|EFU44613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 110-3]
 gi|315300013|gb|EFU59251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 16-3]
 gi|323950918|gb|EGB46795.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H252]
 gi|323955284|gb|EGB51057.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli H263]
 gi|331052174|gb|EGI24213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           TA206]
          Length = 452

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|259047320|ref|ZP_05737721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036016|gb|EEW37271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 461

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 135/466 (28%), Positives = 226/466 (48%), Gaps = 13/466 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ +A+         +   +  ++ D+R + P   F  +KG   DGHD+I  A+Q G
Sbjct: 5   TVAEITKAVGAIDYQSAHRFETIESVAFDTRKLGPNSLFVPLKG-QTDGHDYIEQAIQAG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             I    V+D L A  KLA     +    ++ ITGS GKTTTK+
Sbjct: 64  ATAVLWGKK--DLTPPEGICAIWVEDPLEAFQKLAKWYLEKVSPRVVGITGSSGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M   AL +  + Y   G++NN IG+P T+  MP   +  + E+GMS+  EI FL+ L RP
Sbjct: 122 MTAAALGARYRVYKTQGNFNNDIGLPQTILDMPESTEALVLEMGMSNFHEIEFLSKLARP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +  IT I  +H+      E IA AK EI  GL++ GT      +       A++     
Sbjct: 182 EVVAITLIGESHMEQLGSKEGIAKAKLEILSGLQEKGTFIYPAHEDLITAGIAQAEKPAT 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I + G+  + +   +  +  S+ +  E+    +++ V    +G +   N L+ + I  
Sbjct: 242 FKIVTVGE-GSKELSTKNIELYSDHTAFELVTPTETVAVTLPVLGAYNVSNALLAIEIAR 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   + AL+ F   + R    +    Q    +++++YNA+P +MK+ I     +S
Sbjct: 301 TLEVPLSDIVSALANFELTKNR---TQWVKGQNGVAILNDAYNASPIAMKSVIQSF--VS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GRR+ VLGD+ E+GE S+  H  ++EV+S   ++ V+L G  + AL DAL     +
Sbjct: 356 VEATGRRVLVLGDIRELGEHSKELHASISEVISPSEVALVYLYGEEMEALYDALKDQFEI 415

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              H+    + L   +++ L +GD V++KSSN  G   +++ L  E
Sbjct: 416 AALHHYMDKEALIADLKAELKEGDQVLIKSSNGTGLLAVVDALKAE 461


>gi|261418547|ref|YP_003252229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|319765361|ref|YP_004130862.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
 gi|261375004|gb|ACX77747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC61]
 gi|317110227|gb|ADU92719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. Y412MC52]
          Length = 458

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/462 (27%), Positives = 209/462 (45%), Gaps = 18/462 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  A QKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64

Query: 65  AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+    +     G   + V   DD L AL +LA   R +    +I +TGS GKTTTK
Sbjct: 65  AVAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + R
Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAR 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AHL      E IA AK EI  GL   G    + D+    LL  +   L 
Sbjct: 182 PDAAVITNIGEAHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEP---LLTERVPKLS 238

Query: 244 IKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +     +FG  +  D+     +  +  +         ++      +      ++   L  
Sbjct: 239 LPRHVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHHVYNALAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +++            +     +    R      +  FT+I+++YNA+P SM+AA+ +L +
Sbjct: 295 IAVARFFGIDWEGIDAALSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQE 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419
           +S + +   IAVLGDM E+G+   +FH ++ EVL    + +V+  G     +  A     
Sbjct: 355 LSGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFF 412

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
               V   +    L   ++S     D+V++K+S       L+
Sbjct: 413 DDGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454


>gi|161504754|ref|YP_001571866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866101|gb|ABX22724.1| hypothetical protein SARI_02877 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 452

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 217/469 (46%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPRGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A + T    L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTTIKAGLATLKAVPGRLFPVQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKRSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   +++ L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLKALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|315037504|ref|YP_004031072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|312275637|gb|ADQ58277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus amylovorus GRL 1112]
          Length = 455

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 207/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +            +I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K   +     
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAKKLDQVKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
           +G RIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL       H+
Sbjct: 353 DGCRIAVLGDMLELGKSSPALHAGLSDTLDPQIINEVYLYGPEMKNLYDALKDKYKPEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQDQMDRMIDDLKNDIKPDDIVVLKGSHGMHLENVLARLR 455


>gi|78221629|ref|YP_383376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
 gi|78192884|gb|ABB30651.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Geobacter metallireducens GS-15]
          Length = 470

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 141/472 (29%), Positives = 207/472 (43%), Gaps = 16/472 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L++  D+ +A  G   G      V G+S DSR++ P E F  ++G  +DGHD++  A  +
Sbjct: 2   LFSLADIREATGGTLGGEGKTAGVEGVSTDSRTVQPGELFVPLRGERFDGHDYLGAACDR 61

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  +V+     +        +    VDD L AL  LA   R R    ++A+TGS GKTTT
Sbjct: 62  GVQVVLAEHQWLEKNELPPGVSAVAVDDTLEALGDLACFHRQRFAIPVVAVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+P  L R+     + + E+GMS  GEI  L  + 
Sbjct: 122 KEMLAAILGQTGPGLKTEGNLNNLIGLPQMLLRLDNSHRWAVLEMGMSAFGEIDRLAEIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + +IT   PAHL     +E +A AK E+F  L   G    N DD     L A+  + 
Sbjct: 182 RPDVGIITNAYPAHLETLGSVEGVARAKGELFLRLPAEGCAVFNADDP----LIARCPSP 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG                      ++L  +S+ V     G H   N L     
Sbjct: 238 DGVRRVSFGLHNADVTAEAVENLGRNGQRFILRLSTESVPVTLRAFGRHNIANALAAAAA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L    +T  + L  F P      R       G   LID+SYNANPASM AA++ L +
Sbjct: 298 AHVLGVPTETIARGLGEFSP----YARRFNLEEVGDVILIDDSYNANPASMAAALTTLRE 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      R +AVLGDM E+GE ++  H  L  +L+   +  +++ G     +        
Sbjct: 354 IRA--GRRAVAVLGDMLELGEGAEEAHRQLG-LLAATCVDRLYVMGGMAGIVAAGALEGG 410

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                V  + + D +   ++ +   GD ++VK S      R+   + E F A
Sbjct: 411 LADDAVTVATSHDAIVADLRRTTAAGDFILVKGSRGLAMDRVAEKMREVFVA 462


>gi|329666666|gb|AEB92614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 455

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 218/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM H G++  L+ LVRP +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDHPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++ G + +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP ++KA  +   Q+   
Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVE 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLATSLDPAIINELYLYGPEMKNLYDALVDKYPAEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|291563559|emb|CBL42375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SS3/4]
          Length = 462

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 216/465 (46%), Gaps = 15/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  D++ A  G  +       +N I +DSR +   + F  I G   D H F+    +KGA
Sbjct: 5   SVQDIVLATGGVLLSGDDGVMLNKIRLDSRQVETGDLFVPIIGEKVDAHKFLEQVAEKGA 64

Query: 66  GLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G V+ +   +    +   S     VDD   AL  +    R R    I+ +TGSVGKTTT+
Sbjct: 65  GAVLTSEHKEKTEEMAETSCAWIAVDDTKKALQAVGRYLRKRLTLPIVGVTGSVGKTTTR 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+  ALS+    Y   G+ N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +
Sbjct: 125 EMIAAALSARFHVYKTPGNSNSQVGVPITVSEITKEDEVGVLELGMSEPGELTVIARIAK 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I   H+      E I   K  I +GL   G + LN DD     +  ++    
Sbjct: 185 PDVAVITNIGITHIEQLGSRENIYREKLTIQDGLSDGGILILNGDDD----MLCRTRGKV 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 +G  +  D++         ++       GK+ +V+ + +G H   N L  + + 
Sbjct: 241 GVKTVYYGTGETCDYRAVDLVLMDGKTEFTAVHAGKTQKVLLNVMGTHNVMNALAAIAVC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A + L  FH      K  +     G FT++D+SYNA+PASMKAA+ V   +
Sbjct: 301 CERGMTMEEAAEGLLTFHG----FKHRQQVYADGRFTVMDDSYNASPASMKAALDVFQGL 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RS 421
           +       IAVL DM E+G    ++H ++ E  +   +  V   G    +L + +   + 
Sbjct: 357 TGKR---HIAVLADMKELGGNYLAYHREVGEYAANSGVDLVVTLGEACRSLAEGVRAVKE 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           I V        +  ++++ + DGD V+ K SNS G   + +  +E
Sbjct: 414 IPVVEFSDCGEMVKYLEAEIRDGDCVLFKGSNSMGLSAVADQFVE 458


>gi|49484307|ref|YP_041531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|257426221|ref|ZP_05602636.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428879|ref|ZP_05605273.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257431488|ref|ZP_05607861.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257434198|ref|ZP_05610548.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257437111|ref|ZP_05613151.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904749|ref|ZP_06312623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282906427|ref|ZP_06314278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909395|ref|ZP_06317210.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911648|ref|ZP_06319447.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914928|ref|ZP_06322708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282920259|ref|ZP_06327983.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925470|ref|ZP_06333124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958861|ref|ZP_06376306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293509000|ref|ZP_06667787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510912|ref|ZP_06669611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|293547514|ref|ZP_06672189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295428669|ref|ZP_06821295.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297589854|ref|ZP_06948494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242436|emb|CAG41150.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257270926|gb|EEV03099.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274221|gb|EEV05738.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257277729|gb|EEV08399.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257280837|gb|EEV10982.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2 [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257283504|gb|EEV13631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282312871|gb|EFB43272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316119|gb|EFB46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321131|gb|EFB51462.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282324413|gb|EFB54726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326665|gb|EFB56963.1| hypothetical protein SAYG_02109 [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330377|gb|EFB59895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594782|gb|EFB99759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789579|gb|EFC28402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919634|gb|EFD96707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|291094704|gb|EFE24976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466197|gb|EFF08724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127339|gb|EFG56979.1| hypothetical protein SIAG_02618 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576982|gb|EFH95696.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437504|gb|ADQ76575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193241|gb|EFU23639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- D-alanyl-D-alanyl ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 452

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 214/461 (46%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I+    F   +G + DGH F+  A+Q GA
Sbjct: 5   TLKQIQSWIPCEIEDQFLNQEINGVTIDSRAISKNMLFIPFEGENVDGHRFVSKALQDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G             ++S P+  V+D L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQK-GTPIDENVSGPIIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI FL++L +P 
Sbjct: 124 IESVLHTEFKVKKTQGNYNNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +       
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK-- 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G + +         + +      +  +      +    G H  +N  + + +   
Sbjct: 242 -CISIGVATDNALVCCVDDRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T  + L         G R      +   T+I+++YNA+P SM+AAI  LS ++ 
Sbjct: 298 LGLTYNTIYQNLKN---VSLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
              GRRI +LGD+ E+GE S+  HI +   L   +I  ++  G     + D+  + +   
Sbjct: 354 ---GRRILILGDVLELGENSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  + D +   + S L   D V+VK S       ++N L+
Sbjct: 411 QHFNSKDDMIGVLTSDLKAHDRVLVKGSRGMKLEEVVNALI 451


>gi|315660239|ref|ZP_07913094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
 gi|315494666|gb|EFU83006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus lugdunensis M23590]
          Length = 452

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 206/466 (44%), Gaps = 15/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   I            + G++IDSR++ PQ  F   KG H DGH F+  +
Sbjct: 1   MIEV-TLRQIKSWIDCDIDDQFLDVKIKGVTIDSRAVQPQMLFIPFKGEHVDGHHFVKQS 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +Q GA      T           P+  V D L AL +LA A     +  +IA+TGS GKT
Sbjct: 60  IQDGAAAAFYQTGQEIDSSLEEQPLIYVSDTLTALQQLAKAYLNYVQPKVIAVTGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L +  K     G+YNN IG+PLT+  +  D D  I E+GMS   EI  L+ 
Sbjct: 120 TTKDMIESVLKTQFKVKKTQGNYNNEIGMPLTILELDYDTDISILEMGMSGFHEIELLSS 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVIT I  +H+ +      IA AK+EI  GL+  G    + D+   +   A+  
Sbjct: 180 IAEPDIAVITNIGESHMQDLGSRAGIAKAKSEIVTGLKDNGIFIYDGDEPLLQPHVAQVK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    S G  +N  +        ++     +         +          NM    
Sbjct: 240 HAKL---ISVGLEQNNTYVCTIDSNQNDGIAFNINNTEHYELPIL------GVHNMRNAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +++      +           +  G R    + +   T+I+++YNA+P SMKA+I  L
Sbjct: 291 IAIAVGHELGLSYEMIQHNIKHVQLTGMRMERHVTEQQITVINDAYNASPTSMKASIDTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419
           S +    EGR+I +L D  E+G+ SQ  H ++ E L   NI  ++  G     +     P
Sbjct: 351 SNM----EGRKILILADCLELGDNSQHMHEEIGEYLKNKNIDELYTFGEEAQYIHRSGQP 406

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              H  + E+ + +   ++  LV GD V+VK S       ++N ++
Sbjct: 407 YVSHAQHFESKEAIIEQLKKELVAGDKVLVKGSRGNKLEDIVNAII 452


>gi|260596511|ref|YP_003209082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
 gi|260215688|emb|CBA28022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter turicensis z3032]
          Length = 452

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 204/463 (44%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   ++G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   SLSQLAVILKGELHGADTD--IDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAQAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHQYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++      + 
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPANGIAILNADNNDWLNWQSVIGDRKVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                     +DF        S  +   ++     ++V+    G H   N L    +   
Sbjct: 238 R--FSPNLATSDFSATNIHITSHGTEFTLRTPVGDVDVLLPLPGRHNVANALAASALAMA 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A +      L+      GR      A N     L+D+SYNAN  SM AA  VLS++  
Sbjct: 296 VGAPLQAIKAGLAKLKAVPGRLFPVHLAEN---QLLLDDSYNANVGSMTAAAQVLSEMP- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +++ H  + E      I  V   G     +  A   S    
Sbjct: 352 ---GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVGE 405

Query: 426 YSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
           +      +   +++ + +  ++  +VK S S     ++  L E
Sbjct: 406 HFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448


>gi|291523553|emb|CBK81846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coprococcus catus GD/7]
          Length = 456

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 203/466 (43%), Gaps = 19/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++  A  G    +          G+ IDSR I P   F A KG   DGH FI    
Sbjct: 4   MTLENIAAACGGQIYYMREDLAQETAKGVVIDSRQIEPGYIFVATKGERVDGHRFIPDVF 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V+        +G    P   V+D   AL + A   R +    ++ ITGSVGKT+
Sbjct: 64  AKGALAVICEVLPEEDLG----PCILVEDSFMALKQAAAFYRQQLNIRVVGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE +   L    K +   G+YNN +G+PLT+  +  D    + E+G++  GE+  L+ +
Sbjct: 120 TKEFIAAVLVEKYKVHKTAGNYNNEVGLPLTIFGIQDDDQIAVLEMGINTFGEMHRLSEV 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I V+T I   HL N    + I  AK+EIF+ +   GT+ +N DD     +      
Sbjct: 180 ARPDICVMTNIGQCHLENLIDRDGILRAKSEIFDFMNPEGTVIVNGDDDKLATIHDVYGK 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +   +  AD    +       S  ++ +    +       G HM  N +    
Sbjct: 240 APITFGMNKDNAIWADHIENRGLL---GSRADIHMGDVLVHANIPLPGEHMIYNAMAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +        +     +S      GR          G   +ID+ YNANP SMKAAI +L+
Sbjct: 297 VGVQFDMTKEEITAGISHVEAVAGRSHLIE----AGDKVVIDDCYNANPVSMKAAIDLLA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
                  GR++A+LGDM E+GE  ++ H ++ +  +   I  +   G     + + A  +
Sbjct: 353 TAP----GRKVAILGDMFELGENERAMHREVGQYAAEKGIDLILCVGGLSSEMYEGAAEK 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + E  + L   +Q  L  GD V+VK+S+S  F  ++  + E
Sbjct: 409 GGEARHFEIREALEAVLQDLLQPGDTVLVKASHSMAFENIVQNIQE 454


>gi|290969168|ref|ZP_06560693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290780674|gb|EFD93277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 458

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 122/461 (26%), Positives = 205/461 (44%), Gaps = 16/461 (3%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ QA     +            +  D+RS+     F A+KG  +DGHDF+L AV 
Sbjct: 4   FTVKEVEQATGARLLAPVTGGNRTFLQVYTDTRSLQKGGLFVALKGERFDGHDFVLQAVA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  VVV      +  +L +PVF V D L A   LA   R R    +IA+TGSVGKT+T
Sbjct: 64  KGAAGVVV-AAREETFAALPVPVFAVPDTLRAYQALARFHRRRFALPVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++M+   LS   + +    ++NN IG+P TL  +  + +  + E+GM   G+I  L  + 
Sbjct: 123 RQMIASVLSQKLRVWQTEKNFNNEIGLPKTLLGLTAEHEACVVEMGMRGPGQIAELAAIA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+T +  +H+      E IA AK E+   L  TGT  LN DD     +       
Sbjct: 183 EPTIGVVTNVGKSHIELLGSQENIAKAKGELPAALPATGTAVLNQDDWRVAAMAKLCRGK 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I    S G +     +  + +   +      +   ++       +G H   N L  +  
Sbjct: 243 VIGYGTSVGAA----VRAGEIQTDDKGLSFICRCFDQTFRATVPVLGKHHVYNALAAVAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L        K L+ +             ++ G +T I+++YNANPASM      +  
Sbjct: 299 ARLLGLSETQMCKGLAAYAGV----PMREELVHVGPYTFINDAYNANPASM---EEAVQT 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           ++   + ++IAVLG M E+G+ +   H  L + ++  +I+ +   G     + +A  ++ 
Sbjct: 352 LAAVKKEQKIAVLGGMLELGDWTVREHELLGKKIAAASITALITLGTPASYIAEAAEKAG 411

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              V+           ++  L  G VV++K S      +++
Sbjct: 412 MKAVYQVSDHQAGAAVLRDLLEPGAVVLLKGSRGFTMEKIL 452


>gi|255659948|ref|ZP_05405357.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847822|gb|EEX67829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mitsuokella multacida DSM 20544]
          Length = 459

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 218/465 (46%), Gaps = 10/465 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P +T  ++ +A       +  +     I  D+R I P   F A KG  ++G DF+  AV+
Sbjct: 2   PAFTLDEVREATGAQLYKMEHE-EFTDIVTDTRKITPGVLFLAFKGERFNGEDFVRDAVE 60

Query: 63  KGAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KGA  V+V+T    + +  L   V   +D L A  +LA A R+R    ++AITGS GKTT
Sbjct: 61  KGASGVMVSTSCPKAQLAGLKTTVLIAEDTLTAYQQLAHAWRMRFSLPVVAITGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK++    LS+         +YNN IG+PLTL  +  +    + E+GM  L +I  +  +
Sbjct: 121 TKDLTAAVLSARGPVLKTQANYNNEIGLPLTLLGLRKEHTAAVVEIGMRGLHQIEAMAPI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + ++T +   H+     IE IA AK+E+ E +   GT+ LN D+ +   ++++  A
Sbjct: 181 AAPTVGIVTNVGETHMELLGSIENIAKAKSEMVEAIPAGGTVVLNADNPYVAAMRSQ--A 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + +FG  K AD + ++    +                           N+   L 
Sbjct: 239 REGVRVLTFGIEKEADVRAKEETIETIDGHETRFKIEWKGREQTFTFAMVGRHNVYNALA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            ++   A   T  +A S     +    R+    +   + +I+++YNA+P SMKAAI  LS
Sbjct: 299 AIAAGFALGLTPAEAASGLRNLKATKMRFE-VQDVKTYHVINDAYNASPMSMKAAIETLS 357

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++    +GR+IAV+GDM E+G +S+  H ++   L+ +  + V   G     + D     
Sbjct: 358 EL---TKGRKIAVMGDMLELGSVSEEAHREVGHELAEHGFAAVVTRGQMGAFIADGAEEG 414

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V  +++ +    ++   L  GD ++ K S      ++I+LL
Sbjct: 415 GVPQVFRADSHEAAADYLHKILEPGDTILFKGSRGMQMEKIIDLL 459


>gi|297528576|ref|YP_003669851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
 gi|297251828|gb|ADI25274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacillus
           sp. C56-T3]
          Length = 458

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 206/461 (44%), Gaps = 16/461 (3%)

Query: 6   TFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + +   G  +        V+G+S D+R+I     +  ++G  ++GHDF+  A QKG
Sbjct: 5   TVRQIAEMADGQCLKPEWENMVVSGVSTDTRTIQAGNLYVPLRGATFNGHDFVQEAAQKG 64

Query: 65  AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+    +     G   + V   DD L AL +LA   R +    +I +TGS GKTTTK
Sbjct: 65  AAAVLWAEREGTPPEGVPVVVV---DDTLLALQRLAARYREQLGLKVIGVTGSNGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  +     G+ NNHIGVPLTL  +    +  + E+GMS  GEI  LT + +
Sbjct: 122 DMIAALLSTHYRVQKTEGNLNNHIGVPLTLLSLDEGTEMAVVEMGMSGFGEIERLTMIAK 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  +HL      E IA AK EI  GL   G    + D+        K     
Sbjct: 182 PDAAVITNIGESHLQELGSREGIAKAKLEILAGLHHDGLFVYHGDEPLLTERVPKLPLPR 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG  +  D+     +  +  +         ++      +      ++   L  +
Sbjct: 242 --HVVTFGAGEQNDYYPTDVRIEAGGTSFV----INALPGRTLFMPVLGKHHVYNALAAI 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++            +     +    R      +  FT+I+++YNA+P SM+AA+ +L ++
Sbjct: 296 AVARFFGIDWEGIDASLSRLQVTRMRTEVVKTKYGFTVINDAYNASPTSMRAALMLLQEL 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPR 420
           S + +   IAVLGDM E+G+   +FH ++ EVL    + +V+  G     +  A      
Sbjct: 356 SGYRQK--IAVLGDMLELGDEEVAFHREIGEVLRPGMVDYVFTYGPLAHHIAAAAAPFFD 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              V   +    L   ++S     D+V++K+S       L+
Sbjct: 414 DGRVREFDDKAALAEAVRSVATSDDIVLLKASRGMKLEELL 454


>gi|58336605|ref|YP_193190.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227903162|ref|ZP_04020967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|58253922|gb|AAV42159.1| d-ala-d-ala adding enzyme [Lactobacillus acidophilus NCFM]
 gi|227869148|gb|EEJ76569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 455

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+   +     +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALD-KTCEGDDKTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPEGIAVIEVDDPLAAMQTLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L RP +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTVLEMKPNTEILVLEMGMDRPGQLHHLSELTRPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG   +       +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFEDDDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A I+   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDVGEAIMSDIYNSNPTAVRAVITSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHV 424
            GRRIAVLGDM E+GE S   H +L++ L    I+ V+L G  +  L DAL     S H+
Sbjct: 353 GGRRIAVLGDMLELGENSPKLHAELSDTLDPQIINEVYLYGPEMKNLYDALQGKYESEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|313123074|ref|YP_004033333.1| UDP-N-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279637|gb|ADQ60356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 455

 Score =  265 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 209/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ QA+   S     +  +  ++ DSR I+    F  IKG   DGHDF+  A++ GA 
Sbjct: 5   LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWEAGH--PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP +
Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   ++IA AK EI + L++ G    N D+     L A+  A   + 
Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG + +        +     S+   ++ G   E     IG H   N +  + +    
Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L+ F P   R              ++ + YN+NP ++KA  +   Q+   
Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      ++
Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|170768554|ref|ZP_02903007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
 gi|170122658|gb|EDS91589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia albertii TW07627]
          Length = 452

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADIALDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGQLAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAGA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A  D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALAMSVGATRDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAIGVA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   +++ + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALIAHLKTLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|322421366|ref|YP_004200589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
 gi|320127753|gb|ADW15313.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M18]
          Length = 469

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 140/469 (29%), Positives = 206/469 (43%), Gaps = 17/469 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            ++T  ++ +A  G  IG   Q  V  +S DSR +AP E F  +KG  +DGHDFI  A  
Sbjct: 2   AMFTLQEIAEATGGRLIGEA-QAVVCAVSTDSRQVAPGELFVPLKGERFDGHDFITTAAG 60

Query: 63  KGAGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    +   + + A           V+D L AL  LA   R R    ++A+TGS GKTT
Sbjct: 61  RGVTAFLMAESWLAAHGLPAGASAVAVEDTLRALGDLAAWHRRRFDLKLVAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   L+         G+ NN IG+PLTL R+     + + E+GMS  GEI  L  +
Sbjct: 121 TKEMLARILAQTGPGLKTEGNLNNLIGLPLTLFRLTGRERWAVVEIGMSEFGEIDRLAEI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + +IT   PAHL     +E +A AK E+F  L++      N DD     L +    
Sbjct: 181 ADPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKEGAVAVYNVDDP----LVSSCPT 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T  +FG                E     ++L     +V     G H   N L    
Sbjct: 237 HLNVTRLTFGLRGAEVSSASIKSLGKEGESFTLRLPDGEEQVTLKAYGRHNIYNALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L          L  F P + R +    A      TLID+SYNANPASM AA++ L 
Sbjct: 297 AAHALGVPGQVIRLGLEEFTPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALATLK 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++  G  R  AVLGDM E+G  ++  H +L    +   +  ++L G     ++     +
Sbjct: 353 EVA--GGARTAAVLGDMLELGLGTEEAHRELGGKAAAT-VERLYLLGGLATEVEKGALEA 409

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + ++ T + L   + + L  GD V+ K S      ++   + E
Sbjct: 410 GLSPERIVHAATHEELARELAAWLEPGDCVLFKGSRGMKMEKVATAVKE 458


>gi|300812100|ref|ZP_07092548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496939|gb|EFK32013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 455

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ QA+   S     +  +  ++ DSR I+    F  IKG   DGHDF+  A++ GA 
Sbjct: 5   LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWEAGH--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP +
Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+      ++IA AK EI + L++ G    N D+     L A+  A   + 
Sbjct: 181 AVITMIGEAHIEFLGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG + +        +     S+   ++ G   E     IG H   N +  + +    
Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L+ F P   R              ++ + YN+NP ++KA  +   Q+   
Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      ++
Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|317493283|ref|ZP_07951705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918676|gb|EFV40013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 458

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 209/466 (44%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   +  A+ G  IG      ++ +  D+R +     F A+KG  +D HDF   A
Sbjct: 1   MIPV-SLQAVALAVNGQLIG--ADTQISDVVTDTRKLTDGCLFIALKGEKFDAHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V KGAG ++V+  +      +  P   V D   AL  L    R +  A IIA+TGS GKT
Sbjct: 58  VAKGAGALLVSKRL-----PIDAPQIVVADTHIALGLLGAWIRQQMPARIIALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + +F + ELG +H+GEI +  +
Sbjct: 113 SVKEMSAEILRQCGNVLYTAGNFNNDIGVPLTLLRLEPEHEFAVVELGANHVGEIAYTVN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P  A++  +A AHL  F  +  +A AK EIF+GL   GT  +N D + +   + K  
Sbjct: 173 LVKPESALVNNLAAAHLEGFGSLAGVAKAKGEIFDGLTSNGTAIINADSNDWPHWQEKIT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S   ++  DF     +   + +  E+     ++ V+    G H   N L   
Sbjct: 233 HQRVWR-FSPQAAEAVDFFASDVRITHQGTEFELHTPFGTVPVILPLPGRHNVANALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A ++   + LS      GR    R         ++D++YNAN  SM AA  VL
Sbjct: 292 ALTMSVGATLENVRQGLSELKAVPGRLFPIRL---NAQQLILDDTYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G   +  H  +        I  V   G     + +    
Sbjct: 349 GSMP----GYRVMVVGDMGELGTEEEDCHRQVGIAAREAGIDKVLSVGRLSHLISE---T 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464
           S    +      L   +++ L +     ++VK S S    +++  L
Sbjct: 402 SGCGEHFTDKTALIERLKNLLCEHAAITILVKGSRSAAMEQVVRGL 447


>gi|325684685|gb|EGD26839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 455

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 208/464 (44%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ QA+   S     +  +  ++ DSR I+    F  IKG   DGHDF+  A++ GA 
Sbjct: 5   LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFVPIKGER-DGHDFVGSAIEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  V D L A+  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWEAGH--PNKPEGIAVLEVADTLKAMRDLARYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP +
Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   ++IA AK EI + L++ G    N D+     L A+  A   + 
Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLSQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG + +        +     S+   ++ G   E     IG H   N +  + +    
Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                     L+ F P   R              ++ + YN+NP ++KA  +   Q+   
Sbjct: 295 GESDGEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      ++
Sbjct: 352 EGGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLGKYDQQN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|104773511|ref|YP_618491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513506|ref|YP_812412.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422592|emb|CAI97195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116092821|gb|ABJ57974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 455

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 211/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ QA+   S     +  +  ++ DSR I+    F  IKG   DGHDF+  A++ GA 
Sbjct: 5   LAEIAQALN-TSCEGDAETVITSVAFDSRKISQGALFIPIKGER-DGHDFVGSAIEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             I V  V D L A+  LA     +   T+++ITGS GKTTTK+M+
Sbjct: 63  ATLWEAGN--PNKPEGIAVLEVADTLKAMQDLARYYLQKVNPTVVSITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     Y    ++NN IGVP+T+  M    +  + E+GM   G++  L+ L RP +
Sbjct: 121 AAVLAKRFNVYKTQANFNNEIGVPMTILEMKPITEILVLEMGMDRAGQLHELSQLARPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   ++IA AK EI + L++ G    N D+     L A+  A   + 
Sbjct: 181 AVITMIGEAHIEFFGSRDKIADAKMEITDFLQEDGEFIYNGDEP----LLAERAAKLPQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG + +        +     S+   ++ G   E     IG H   N +  + +    
Sbjct: 237 KSTFGFADSDSIHASDLRSTMHHSF--FKINGTDREFSIPMIGRHNVANAMAAILVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L+ F P   R              ++ + YN+NP ++KA  +   Q+   
Sbjct: 295 GESDEEIAAGLANFVPTANR---MEWEKGDCGEDIMSDIYNSNPTAVKAVTASFGQVPVS 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
            +GRRIAVL DM E+G  S   H  LA  L    I+ ++L G  +  L  AL      ++
Sbjct: 352 EDGRRIAVLADMLELGSRSADLHKGLAACLDPDKINVLYLYGPEMNHLYQALLDKYGQQN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M  L   ++S +   D+V++K S+     R+++ L 
Sbjct: 412 LHYYPEDEMSHLIDDLKSDIHSQDIVLLKGSHGMHLERVLDRLK 455


>gi|205372273|ref|ZP_03225087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           coahuilensis m4-4]
          Length = 456

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 209/466 (44%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   +   + + +     V+G+ ID+R +     F   KG + DGH F+   ++KG
Sbjct: 5   TIGQIATIVGALNDVSLFKDQLVHGVIIDTRKLTAGNLFVPFKGENVDGHTFVRDVLEKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG         A      +PV  V+D L AL  L+ A R      ++ +TGS GKTTTK+
Sbjct: 65  AGAAFWEK--SAGPAPEGLPVIVVEDSLVALQTLSKAYRNELNVKVVGVTGSNGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  + +   G+YNNHIG+PLT+  +P D +  + E+GMS  GEIR LT +  P
Sbjct: 123 ILFALLSTKYRVHKTEGNYNNHIGLPLTILSLPEDSEVAVLEMGMSGFGEIRELTQIALP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A+IT I  +HL +    E I+ AK EI EGL+  G    N D+     L  +      
Sbjct: 183 DAAIITNIGESHLQDLGSREGISKAKFEIVEGLKSEGLFVYNGDEP----LLQERVKGYG 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +FG+  +        K           +     E     +G H   N +  + I  
Sbjct: 239 GSKETFGRHSSNTMYP--TKLAPSGFGTTFSVNVSDEEFHLPILGEHNVMNTMGAMLIAK 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K LS     +  G R   +      T+I+++YNA+P+S KAAI +L  IS
Sbjct: 297 FFGVGFGDMQKGLST---LKLTGMRLEVSTGAKGETIINDAYNASPSSTKAAIDLLQTIS 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               G+R  V+ DM E+G   ++FH ++   ++  +I  V   G     + +        
Sbjct: 354 --TTGKRYFVVSDMLELGPNEEAFHHEVGTYVTD-DIDCVLTYGPLSSFIAEGAKETLPE 410

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V + +    L  +++  +   D V+VK+S       ++  L +E
Sbjct: 411 DRVIHFDEKSALIAYLKVVVKSDDTVLVKASRGMKMEEVVLALQKE 456


>gi|331645196|ref|ZP_08346307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
 gi|330909933|gb|EGH38443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli AA86]
 gi|331045953|gb|EGI18072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           M605]
          Length = 452

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANNDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L       GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|82775493|ref|YP_401840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae Sd197]
 gi|309787238|ref|ZP_07681850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
 gi|81239641|gb|ABB60351.1| D-alanine:D-alanine-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924816|gb|EFP70311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1617]
          Length = 452

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ +        I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGGAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|295397628|ref|ZP_06807703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
 gi|294974091|gb|EFG49843.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus viridans ATCC 11563]
          Length = 466

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 141/471 (29%), Positives = 223/471 (47%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P     D+++A++        +   ++ +  DSR I P   F  +KG   DGH +I  
Sbjct: 1   MKPTQ-IKDIVKAVEAIDFTSTARFTEIDSVEFDSRLITPGALFVPLKGA-TDGHSYIDK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA   + + D   +   +  P+  V+D L A+   A A     K  ++ ITGS GK
Sbjct: 59  AIENGAVAALWSND--PNEAPVGFPIIQVEDTLVAMQAFAKAYLGWIKPKVVGITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M   ALS+  K +   G+YNN IG+P T+  MP D +  + E+GMS  GEI FL+
Sbjct: 117 TTTKDMTAAALSTALKVHKTNGNYNNDIGLPKTILDMPEDTEVIVLEMGMSGAGEISFLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P + VIT I   H+      E IA AK EI +GL++ GT     D+    L+  + 
Sbjct: 177 KLAEPDVVVITMIGENHIEFLGSRENIAKAKLEILDGLKEEGTFIYPGDEP---LIVDQM 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                ++  + G + + D          +            +++     G +  QN L  
Sbjct: 234 PTDLKQSTLTIGLNDDHDIFAFD-VMMDQFQSTFYTNLSPELKMEIPLSGGYNVQNALYA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG+       ++     L+ F     RG   R  L+     +++++YNA+P++MKA I  
Sbjct: 293 LGVAYSFGLSMEQVRPNLAEFSITPDRGSWERGILDTQ---ILNDTYNASPSAMKAVIRN 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
            S I+  G  ++I VLGDM E+G  S   H ++A V+ L    HV+L G  +  L DAL 
Sbjct: 350 FSAIASKGMSQKILVLGDMLELGAFSDELHREIATVIGLNTFKHVFLYGPRIQPLVDALI 409

Query: 419 PRSIH----VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +H     +     + L   +++ L   D V+VK+SN  G   L+  L 
Sbjct: 410 EKGMHPDLITYIESDKEALIEQVKAILQPEDKVLVKASNGMGLIELVEALR 460


>gi|300949896|ref|ZP_07163859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|300955952|ref|ZP_07168285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300317172|gb|EFJ66956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 175-1]
 gi|300450728|gb|EFK14348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 116-1]
 gi|323939874|gb|EGB36074.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E482]
          Length = 452

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQITDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|323142006|ref|ZP_08076857.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413538|gb|EFY04406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 454

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 203/466 (43%), Gaps = 16/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L A +     +       G++ DSR++ P E F A+KG ++DGHD+   AV+ 
Sbjct: 1   MLKASEVLAATKA----VCADFEFTGVTTDSRAVKPGELFVALKGDNFDGHDYCAKAVEL 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA  VVV+ ++        + VF V+D L A  +LA A R  +    + AITGS GKT+T
Sbjct: 57  GAAGVVVSHEVSG--LPAGVAVFMVEDTLLAYQQLAHAYRLRKQGLKVFAITGSNGKTST 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L   LS         G++NN IG+P TL  +  D D  + E+GM  LG+I  L  + 
Sbjct: 115 KDLLAACLSCKYNVVKTQGNFNNEIGLPKTLLSIKPDTDIAVVEMGMRGLGQIAELCRIA 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   +IT +   H+     +E I  AK+EI   L + G   LN D+ +      K+ A 
Sbjct: 175 EPDSGLITNVGETHMELLGSMENIGKAKSEIVLNLPEDGFAVLNGDNEYVLPAADKTKAK 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +     FG  +N DF+          +      +     V                  I
Sbjct: 235 VVY----FGLGENCDFRGSDIVTSGAGTTFTCTHKATGEAVNVSLQLIGEHNVYNALSAI 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  V  A+ A +            +  +  G  T I+++YNA+PASM+AA+  L++
Sbjct: 291 AGAFCYGVPMAVSAQA--LATARLTGSRQEIVYIGDITFINDAYNASPASMEAALKTLAE 348

Query: 363 IS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                HG+ R IAVL DM E+G++S+  H  +        +  V   G     + D    
Sbjct: 349 AKKAAHGKARTIAVLADMLELGDISEDAHRRVGRWAVENGVDFVLTYGPQAAYIADEAAE 408

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +          ++     GD++++K S+S    +++ L  
Sbjct: 409 LGGKSKHCADRQEAADALRLMASAGDIILLKGSHSMQVDKMLELFK 454


>gi|310659203|ref|YP_003936924.1| UDP-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase
           [Clostridium sticklandii DSM 519]
 gi|308825981|emb|CBH22019.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Clostridium sticklandii]
          Length = 457

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 131/471 (27%), Positives = 204/471 (43%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T + +L    G +        +  +  DSR I   + + AIKG ++DG+DFI  A
Sbjct: 1   MIKL-TKNQILSWTSGENNFKDYNPKIANVVTDSRKIQENDCYIAIKGENFDGNDFIEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +   A +++ N             V  V+D + AL  +A    ++     +A+TGS GKT
Sbjct: 60  INNKASVILSNRQSSNKE------VITVEDTVIALGSIAKNYLMQFDIKKLAVTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+ML    +    T+   G+YNN IG+PLT   +    +  IFE+GMS LGEI +L  
Sbjct: 114 TTKDMLYYVFNEHFSTHRTDGNYNNEIGLPLTALNIDKGYEAAIFEMGMSALGEIDYLAQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP+IA+IT I   H+      E I  AK EI   L     + +N DD +   L    +
Sbjct: 174 IVRPNIAIITNIGSCHIEILKSQENIFKAKMEISNYLNNDDYLIVNGDDKYLTSLSENEY 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +     +G  +    +   +K    QS   V   G +       IG H   N L  +
Sbjct: 234 KFNLIK---YGFGEECQLRASDYKAVDGQSEFWVTGMGINRRFTLPAIGLHNVSNALSAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I     +     L  F P + R       L +     I++SYNANP SM+A I+  
Sbjct: 291 AAGLIYKIPTEKIQAGLMKFQPSKLRM----QILEKNNIKYINDSYNANPESMEAVITSF 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
              +    GR+IA+LGDM E+GE S + H  +  + S      V+  G  +    D    
Sbjct: 347 ESYAR---GRKIAILGDMLELGEFSVAAHERIGRLASE-KFDLVFFIGSQMKHAFDNFST 402

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   ++    +     I+  +  GD +++K S       + + L ++
Sbjct: 403 DENTDKRKYHFIDNNIAIEEIKRIIKYGDTILLKGSRGMKLDEIFSALTDD 453


>gi|253988590|ref|YP_003039946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780040|emb|CAQ83201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Photorhabdus asymbiotica]
          Length = 459

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 139/474 (29%), Positives = 216/474 (45%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T   L Q   G    +        ++  ++ D+R +     F A+KG  +D HDF
Sbjct: 1   MISL-TLQQLAQVTDGVLNQVTERQAIDIYIRDVTTDNRKVENGSLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV+ GAG ++V+      + +++ P   V+D   A+ KLA   R +SKA ++A+TGS
Sbjct: 60  SADAVKAGAGALLVSR-----VLAINCPQVVVEDTRLAMGKLAGWVRQQSKARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G+ NN IGVPLTL R+    +F + ELG SH+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   +VRP  A++  +  AHL++F  +  IA AK EIF GL + GT  +N + + +    
Sbjct: 175 YTVEMVRPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLPEKGTAIINVESNDWAYW- 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +         +S  ++  ADF     +     +   +     S E+     G H   N 
Sbjct: 234 QQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      LS      GR      A       L+D++YNAN  SM  A
Sbjct: 294 LAASALAISVGATLRDIRLGLSELRAVPGRLFPINLAEG---KLLLDDTYNANVGSMTVA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G R+ V+GD+  +GE S+ +H  + E  +   I  V+  G   + + +
Sbjct: 351 VQVLSQMP----GYRVMVVGDIGALGEQSEDYHRQIGETAASCGIDRVFSVGKLSIHISE 406

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
           A   S    +      L   +   L    V  V+VK S +     +++ L E F
Sbjct: 407 A---SGCGQHFADKAALIATLIPLLQQHKVISVLVKGSRNTAMEDVVHALQESF 457


>gi|324008321|gb|EGB77540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 57-2]
          Length = 452

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A +     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAES---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|320179648|gb|EFW54597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Shigella
           boydii ATCC 9905]
          Length = 452

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G     +  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHTISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|221632094|ref|YP_002521315.1| putative udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157083|gb|ACM06210.1| probable udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase protein
           [Thermomicrobium roseum DSM 5159]
          Length = 466

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 17/475 (3%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + +  D+L    G   G   P      +  DSR++ P + F A++G  +DGHDF+  AV+
Sbjct: 1   MISLRDVLDGTAGMLRGSAAPDLLFRRVWHDSRTVEPGDLFVALRGERHDGHDFVADAVR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V       + +L IP+  VDD L AL +LA   R      + A+TGSVGKT+T
Sbjct: 61  RGAAGALVEARWAEELANLGIPLIVVDDTLAALLRLASYWRRLFAVPVAAVTGSVGKTST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTHL 181
           KE +   L+   +      S+N  +G+ L L  +  + D  + E      LGE+R L  L
Sbjct: 121 KEAIASVLAQRFQVVRSRASFNTDVGIALDLLTIDPNTDVVVLEFGEAYRLGEVRELCAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+T ++ AHL+    IE IA + AE+ E L   G   LN DD    L+  ++ A
Sbjct: 181 AEPRIGVVTNVSYAHLARMGTIERIAQSIAELPESLPADGVAVLNGDDFRVRLMAERTPA 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +    S               +  +    ++   G+   V    +G H   + L  + 
Sbjct: 241 RVLLYGLS---PDCHVRAEEIESRGLDGISFDLVAFGERNRVRLPLLGQHSVHHALAAIA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L   ++  +              R          TL+D++YNA+PAS  AA+S+L+
Sbjct: 298 VGYELGLTLEEMLPGFHDPR----VQVRLLTVPGINGATLLDDTYNASPASCMAALSLLA 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I       RIAV GDM E+G   +  H  +    +   +  ++  G     + +A   +
Sbjct: 354 EIPAQR---RIAVFGDMYELGWYEEEGHRMVGRRAAAV-VDRLFTLGPRARWIAEAAIEA 409

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
                 V  ++    L   ++ +L  GD V++K +       ++  L       Q
Sbjct: 410 GLAPERVWATDDRRELVAVLRETLRPGDFVLIKGARGMRMEEIVEALRAAQETEQ 464


>gi|281177306|dbj|BAI53636.1| D-alanine:D-alanine-adding enzyme [Escherichia coli SE15]
          Length = 452

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L       GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLVNLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|200387025|ref|ZP_03213637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199604123|gb|EDZ02668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 452

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 214/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G       + +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTFDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|116628938|ref|YP_814110.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus gasseri
           ATCC 33323]
 gi|238853537|ref|ZP_04643909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282852613|ref|ZP_06261955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
 gi|116094520|gb|ABJ59672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|238833833|gb|EEQ26098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 202-4]
 gi|282556355|gb|EFB61975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus gasseri 224-1]
          Length = 455

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 215/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLAGVR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGK--PTDVPVIEVEDPLTALQSLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLAKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQD 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++     +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEINDSEQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP ++KA  +   Q+   
Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVKAVTTSFGQVMVQ 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESAELHASLANALDPAIINELYLYGPEMKNLYDALVDKYPAAN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDEMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|296448267|ref|ZP_06890161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
 gi|296254219|gb|EFH01352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylosinus
           trichosporium OB3b]
          Length = 474

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 180/470 (38%), Positives = 255/470 (54%), Gaps = 8/470 (1%)

Query: 1   MNP--LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    LW+   L+ A++    G +P    +GISID+R++AP + FFAIKG   DGHDF+ 
Sbjct: 1   MKAESLWSGLGLVGALRARVSGGLP-RDASGISIDTRTLAPGDLFFAIKGEARDGHDFVA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A ++GA   VV+     ++     P++ V DV  +L +L   AR RS A ++ +TGSVG
Sbjct: 60  AAFERGAAGAVVDEAHAGALAGR-APLYVVKDVQESLERLGARARERSAAYVVGVTGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM    LS     +A   SYNN  GVPL+LARMP    FG+FE+GM+H GEI  L
Sbjct: 119 KTSTKEMAAAVLSRFGAAHASAASYNNQWGVPLSLARMPAATRFGVFEIGMNHAGEIAAL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             LV PH+A++T +AP HL +F+ +E IA AK+EIF G+   G   LN DD  FE +   
Sbjct: 179 APLVEPHVALVTRVAPVHLEHFACLEAIADAKSEIFSGVVDGGVAILNRDDETFERMLEA 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     ++ FG S+ A  +L  +         ++  +           G H A N L 
Sbjct: 239 AAASRAAHVFGFGVSEGAQARLLSYDPRENSVEADIFGRRL--RYRIGAPGRHFALNSLA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I  +L  D+  A  AL+ F P +GRG+R +        TLIDESYNANP SM+AA+ 
Sbjct: 297 VLTIAHVLDLDLAQASAALAEFAPPKGRGRREQLPAGAVPLTLIDESYNANPTSMRAALE 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L    P   GRR+AVLGDM E+G  +   H +LA  L    +  ++ +G  +  L  A 
Sbjct: 357 LLGAERPI--GRRVAVLGDMLELGPSAAELHAELASDLEAAGVDLLFTAGPLMARLYYAA 414

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P  +   +  T   L   +  SL  GDVV++K SN     R++  +  +F
Sbjct: 415 PERMRGAHRATARELEEAVLDSLGAGDVVMIKGSNGSRMTRIVEAIRTKF 464


>gi|262047225|ref|ZP_06020183.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|293380350|ref|ZP_06626421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|312978401|ref|ZP_07790143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
 gi|260572470|gb|EEX29032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-3A-US]
 gi|290923033|gb|EFD99964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus 214-1]
 gi|310894744|gb|EFQ43816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Lactobacillus crispatus CTV-05]
          Length = 455

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 205/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+   +     Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA  
Sbjct: 6   AEIAKALN-TTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R             +++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFTPTANR---MEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  LA+ +    I+ V+L G  +  L DAL     P  +
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLADTMDPQIINEVYLYGSEMKNLYDALQGKYEPEHL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  E  D +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|227888880|ref|ZP_04006685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850573|gb|EEJ60659.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 455

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++ G + +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP +++A  +   Q+   
Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVMVE 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|110804150|ref|YP_687670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613698|gb|ABF02365.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 5 str. 8401]
 gi|332762647|gb|EGJ92912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 4343-70]
 gi|333009159|gb|EGK28615.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-218]
 gi|333011474|gb|EGK30888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-272]
 gi|333021717|gb|EGK40966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-227]
          Length = 452

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S      +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|251788246|ref|YP_003002967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           zeae Ech1591]
 gi|247536867|gb|ACT05488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya zeae
           Ech1591]
          Length = 453

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    +G      ++ +S D+R +     F A++G  +D HD+   AV  GA
Sbjct: 5   SLRQLADVLGARLVGK--DLIISDVSTDTRKLTAGCLFVALRGEKFDAHDYAADAVNYGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   VDD   AL  +A   R +S+A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHL-----PIEVPQLVVDDTRLALGVMAGWVRQQSQARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  + D+ + ELG +H+GEI + T +VRP 
Sbjct: 118 TASILRQCGNVLYTAGNFNNDIGVPLTLFRLTPEHDYAVIELGANHIGEIAYTTAMVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +E +A AK EIF GL   G   +N D +     +    A    
Sbjct: 178 AALVNNLAAAHLEGFGSLEGVAQAKGEIFGGLPAQGVAIINADSNDEARWQD-VLAGKTL 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S  +    DF     +     +   +      + V     G H   N L    +   
Sbjct: 237 WRFSPQECDGVDFYAGDIRISERGTDFVLHSPMGDIAVTLPLPGRHNIANALAATALALA 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     L       GR              L+D+SYNAN  SM AA+ VL+++  
Sbjct: 297 VGASLEAVKVGLEQLQAVSGRLF---PIALAPGKLLLDDSYNANVGSMTAAVHVLAEMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +Q+ H  + E     NI  V   G     + +    S    
Sbjct: 353 ---GYRVMVVGDMAELGQDAQACHRQVGEAACKANIDKVLSVGALSALIGE---TSGTGE 406

Query: 426 YSETMDGLFLFIQSSL-VDGDV-VVVKSSNSCGFYRLINLLLE 466
           + +    L   +++ +     + V++K S S    ++++ L E
Sbjct: 407 HFDNKTALIDRLRALVTQHNTITVLIKGSRSAAMEQVVHALQE 449


>gi|160872772|ref|ZP_02062904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
 gi|159121571|gb|EDP46909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Rickettsiella
           grylli]
          Length = 444

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 141/462 (30%), Positives = 223/462 (48%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   ++G  +G        GIS+DSRSI P E F A++G  YDGH ++  A Q G
Sbjct: 1   MKLSTLASRLKGTLLG--ADAHYKGISVDSRSIKPHELFIALRGKQYDGHHYVGEAQQHG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   VV       +    +P+  V+D   AL +LA   R +    II +TGS GKTTT+E
Sbjct: 59  AAAAVVEE-----VIETDLPLVLVEDTRKALGELAKHHRRQFSIPIIGLTGSCGKTTTRE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+ +    A   ++NN IG+PLTL  +  +  + + E+G +H GEI +LTH+ +P
Sbjct: 114 MIRSILAEMGPVLANFKNFNNAIGLPLTLLHLTAEHRYAVIEMGANHAGEIDYLTHITQP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I PAHL  F  I  +A AKAEIF GL + G   LN  D+  ++L+    A   
Sbjct: 174 DIALITNIGPAHLQGFGSILRVAEAKAEIFSGLAQKGVAILNAADNHRDILEK---ASAQ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++N DF  R+ +   +++     L   S E +   +      +++  L   +
Sbjct: 231 YRRVNFGLTQNCDFYARQIQL--DKTGRPTFLLVSSGEEIIIRLNLSGQHHVMNALAAAA 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +            S     +    R      +   TLID+SYNANP+S+ AA+ +L+   
Sbjct: 289 VARQVGVEFSVIQSGLEKMQPLSGRVINRTTKTGATLIDDSYNANPSSVAAALKLLA--- 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            H +G RI VLGDM E+G+ + ++H  + E+     I  V+  G        A     H 
Sbjct: 346 -HYKGLRILVLGDMSELGKSAGAYHRQMGELAKALTIDKVYTCGDLSEETAKAF--GAHG 402

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +      L L ++  +     +++K S +    ++   L++
Sbjct: 403 KHYSNHQKLILALKPDVQKNVTILIKGSRNAQMEKVAAALMD 444


>gi|77166316|ref|YP_344841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|254436269|ref|ZP_05049776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
 gi|76884630|gb|ABA59311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207089380|gb|EDZ66652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Nitrosococcus oceani AFC27]
          Length = 454

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 138/460 (30%), Positives = 208/460 (45%), Gaps = 19/460 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  +L  A+QG   G       +G+S D+RS+ P   F A++G  +DGH FI  A +KG
Sbjct: 7   MSLRELTSAVQGRLQG--ANVAASGVSTDTRSLVPGSLFVALRGERFDGHAFIAQAREKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   ++   +        +P   V D   AL +LA   R R    I+A+TGS GKTT KE
Sbjct: 65  ASAALLEQAINDP-----LPQIEVADARIALGQLAACWRQRFVRPIVAVTGSNGKTTVKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L   +   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP
Sbjct: 120 MIASVLGWREPVLATRGNLNNDIGVPLTLLELDTSHRFAVIEMGANRPGEIEYLSRLTRP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +      G 
Sbjct: 180 QVALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPCFSYWRD---LAGE 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG SK+A+   R     +  S   +       ++     G H   N L       
Sbjct: 237 LPVIGFGLSKSAEVTARHVVASTGSSCFTLITPAGKAKIQLPLPGRHNVLNALAASAATI 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      +L+      GR +  R         L+D++YNANPAS +AA+ +L++  
Sbjct: 297 ALGVDRQHLSASLAALSSVPGRLQIRRGIGG---MRLLDDTYNANPASFQAALELLAKFP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGD  E+GE + S H  + +      ++ ++  G       +A  R    
Sbjct: 354 ----GERALVLGDFAELGEEAASLHRIMGKQARAAGVNRLYTLGRLGAFAAEAFGRG--A 407

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +      L   +Q  L     ++VK S      +++ +L
Sbjct: 408 LHFLEQRSLLEVLQEELHPNITLLVKGSRCMRMEQIVAVL 447


>gi|268318826|ref|YP_003292482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
 gi|262397201|emb|CAX66215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus johnsonii FI9785]
          Length = 455

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++ G + +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATIFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP +++A  +   Q+   
Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPTAVRAVTTSFGQVMVE 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPEEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|16128079|ref|NP_414628.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89106969|ref|AP_000749.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170079725|ref|YP_001729045.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238899487|ref|YP_002925283.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|256025400|ref|ZP_05439265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia sp. 4_1_40B]
 gi|301028569|ref|ZP_07191799.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301646398|ref|ZP_07246280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|307136687|ref|ZP_07496043.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli H736]
 gi|331640539|ref|ZP_08341687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
 gi|2507071|sp|P11880|MURF_ECOLI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1743865|gb|AAC44657.1| UDP-MurNAc-Tripeptide:D-Ala-D-Ala-Adding enzyme [Escherichia coli]
 gi|1786274|gb|AAC73197.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|85674322|dbj|BAB96654.2| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Escherichia coli str. K12 substr. W3110]
 gi|169887560|gb|ACB01267.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238863754|gb|ACR65752.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli BW2952]
 gi|260450707|gb|ACX41129.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Escherichia
           coli DH1]
 gi|299878380|gb|EFI86591.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 196-1]
 gi|301075368|gb|EFK90174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli MS 146-1]
 gi|309700297|emb|CBI99585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Escherichia coli ETEC H10407]
 gi|315134780|dbj|BAJ41939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia coli DH1]
 gi|323935138|gb|EGB31505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Escherichia coli E1520]
 gi|331040285|gb|EGI12492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Escherichia coli
           H736]
          Length = 452

 Score =  264 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|331092270|ref|ZP_08341098.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401702|gb|EGG81281.1| hypothetical protein HMPREF9477_01741 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 457

 Score =  264 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 200/468 (42%), Gaps = 22/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+G++IDSR +     F AIKG   DGHDFI   ++
Sbjct: 4   MSLQEIATACGGTYFGDSTKLSLEVSGVAIDSRKVEKDFLFVAIKGARVDGHDFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +   D    +G +      V     AL  LA   RL     ++ ITGSVGKT+T
Sbjct: 64  NGALCALSEKD----LGDVPYSYILVKSCEQALKDLAEYYRLALDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G++   E+  L  + 
Sbjct: 120 KEMIASVLEQKYSVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGINEFEEMHRLAKVA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL N    + +  AK E+F+ +     I LN DD     ++     +
Sbjct: 180 RPDICVITNIGFCHLENLIDRDGVLRAKTEMFDFMRDGAQIILNGDDDKLITVQ----NV 235

Query: 243 GIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  FG ++  D+          + +   + L   ++    H  G HM  N L    
Sbjct: 236 KGIIPVFFGLTERHDYYATDVHSLGLKGTSCILHLPNGTVNANIHLPGAHMVYNALAGAC 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +   K +    P  GR            F +ID+ YNANP SMKA++ VL 
Sbjct: 296 VGYSLGLTNEEIQKGIESLLPVSGRNNLIE----TDDFLIIDDCYNANPVSMKASLDVL- 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-- 419
               +  GR++A+LGDM E+GE  ++ H  +    +      +   G       +     
Sbjct: 351 ---SNALGRKVAILGDMGELGEDEKALHYGVGVYAAKKETDLICCIGTLAQEFVNGANSV 407

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  Y  T +     + S +  GD ++VK+S+S  F  ++  L +
Sbjct: 408 TSKSETLYFATKEEFLSQMHSIVKKGDTILVKASHSMEFPEIVEALQK 455


>gi|89067944|ref|ZP_01155388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046542|gb|EAR52598.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Oceanicola
           granulosus HTCC2516]
          Length = 480

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 179/474 (37%), Positives = 251/474 (52%), Gaps = 17/474 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LWT  +  +A  G           +G+SID+R++AP + F A+K    DGH+F+  A++
Sbjct: 2   ALWTAAEAARATGGD---NRTDWTADGVSIDTRTLAPGDLFVALKAAR-DGHEFVAQALE 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V         +   P+  V DVL AL  L  AAR R+ A + AITGSVGKT++
Sbjct: 58  KGAAAALVTH--RPEGVAADAPLLVVPDVLAALEALGRAARARTNARVAAITGSVGKTSS 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML  AL    +T+A   SYNNH GVPLTLARMP D ++ I E+GM+H GEI  L  L 
Sbjct: 116 KEMLRAALERQGRTHAAEASYNNHWGVPLTLARMPADTEYAIVEIGMNHPGEIAPLARLA 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A++T +APAHL  F  IE IA  KA IFEGLE  GT  +N D     +L+A + A 
Sbjct: 176 RPHVAMVTIVAPAHLEAFDSIEGIAREKASIFEGLEPGGTAIINGDLPTTPILRAAAEAA 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + + SFG       +L   K     +    +L    + +     G H A N L  L  
Sbjct: 236 GAEIV-SFGTQAGNHHRLTDIKVHEGCTVASARLWRTEVHLKVATEGAHFAVNALGCLAT 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT----LIDESYNANPASMKAAIS 358
            + L AD   A+  L+ + P  GRG R    L+ G       LID+++NANPAS+ AA+ 
Sbjct: 295 AAALGADRSHALMGLACWAPPPGRGTRETLVLDDGVAVGAIELIDDAFNANPASLAAALE 354

Query: 359 VLSQISPH------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           VL+   P       G+GRRIA+LGDM E+G  +   H  +A+  ++ ++  V   G  + 
Sbjct: 355 VLAAARPRDDLGHIGKGRRIAILGDMLELGPEAAGLHAAVADEPAMAHVDLVHCVGPLMR 414

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L  ALP      + E  + L       +  GDVV+VK S      R+++ + +
Sbjct: 415 ELHRALPDGRRGRWVENAEDLAAKAARLVDPGDVVLVKGSKGSRVSRVVDAIRK 468


>gi|315504602|ref|YP_004083489.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Micromonospora sp. L5]
 gi|315411221|gb|ADU09338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora sp. L5]
          Length = 469

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 205/474 (43%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A+  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPDDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G+S++AD +          +    +     S  V     G H   N L
Sbjct: 234 TRA----RVVRYGESEHADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL+       R             T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTGVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +   GEGR +AVLG M E+G+     H  +  + +   +  + + G     + + 
Sbjct: 348 RALASMR--GEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                                  ++S L  GDVV+VK S     + + + L  +
Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458


>gi|312898964|ref|ZP_07758352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
 gi|310620126|gb|EFQ03698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Megasphaera micronuciformis F0359]
          Length = 457

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 206/468 (44%), Gaps = 15/468 (3%)

Query: 3   PLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            ++T  +++ A     +         + I  D+R+I     F A++G  +DGHDFI  AV
Sbjct: 2   AMFTDGEIVLATGARILQQGRKNIRYSSIETDTRTIGEDAVFVALRGEKFDGHDFIEQAV 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             G   V+V+ D           +F V + L A   LA+  R R    ++A+TGSVGKT+
Sbjct: 62  SLGTTAVIVD-DAGRLYPDGDYTIFVVKNTLKAYQDLALYHRRRFAIPVVAVTGSVGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+ ++   LS          ++NN IG+P TL ++  +    + E+GM  LG+I+ L  +
Sbjct: 121 TRSLIATVLSQKYNVLQTEKNFNNEIGLPRTLLQLTGEHGACVVEMGMRGLGQIKELADI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+T +  +H+        IA AK E+ E L   GT  LN DD     +  K   
Sbjct: 181 AEPTIGVVTNVGKSHIELLGSQANIAKAKGELVEALGTDGTAVLNGDDKRVAAMAEKCKG 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +    SFG  +NA       K   +      +   + M+V    +G H   N L  + 
Sbjct: 241 KTV----SFGIKENAPVMAGAIKTDEKGISFTCRCFDQVMDVHMSVLGRHNVYNALAAVA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L        K L+ +          +  ++    T I+++YNANPASM  A+  L 
Sbjct: 297 VGRLLGMSEHQMQKGLAEYKGV----PMRQELIHLEDLTFINDAYNANPASMAEAVHTLM 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            ++    GR+IAVLG M E+G+ +++ H  +  +L+      +   G     + D   + 
Sbjct: 353 SVAS---GRKIAVLGGMLELGDWTKAEHEKIGALLAAEKADALIALGDEATYIADGAEQK 409

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +V+   T       ++   V GD +++K S      +++     +
Sbjct: 410 GMKNVYKVRTHKEGAEILRKIAVAGDTILLKGSRGFAMEKILPYFERK 457


>gi|253689957|ref|YP_003019147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756535|gb|ACT14611.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 453

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 208/463 (44%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   +    IG      +  +S D+R +     F A+KG  +D HD+   AV+ GA
Sbjct: 5   SLQQLATVLNAQLIGESID--IEDVSTDTRKLTSGCLFVALKGEKFDAHDYAADAVKGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+  +      + +P   V D    L +L    R +S A ++A+TGS GKT+ KEM
Sbjct: 63  AALLVSKHL-----PIDVPQLLVSDTRLTLGQLGAWVRQQSTARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L          G++NN IGVPLTL R+  +  F + ELG +H+GEI + T LVRP 
Sbjct: 118 TAAILRQCGSVLYTAGNFNNDIGVPLTLLRLTAEHQFAVIELGANHIGEIAYTTDLVRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   +N D + F   +   +   + 
Sbjct: 178 SALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIVNADSNDFPHWQVTLNHKTVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + + DF        ++ +   +       +V+    G H   N L    +   
Sbjct: 238 R-FSPQAACDIDFFASDVDVLAQGTRFTLHSPFGETQVLLPLPGKHNISNALAAASLAMS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A ++     LS      GR              L+D+SYNAN  SM AA  VL+++  
Sbjct: 297 VGATLEAVKAGLSQLQAVPGRLF---PIALSEGKLLLDDSYNANVGSMTAAAQVLAEMP- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +   H  + E   +  I  V   G     +  A   S +  
Sbjct: 353 ---GYRVMVVGDMGELGDDAPECHRQVGEAARVAGIDRVLSVGTLSELIGTA---SGNGE 406

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           + +    L   ++  + + +V  V+VK S S    ++++ L E
Sbjct: 407 HFQNKAALVSRLKVLMSEHNVISVLVKGSRSAAMEQVVHALQE 449


>gi|218547543|ref|YP_002381334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355084|emb|CAQ87691.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia fergusonii ATCC 35469]
 gi|325496022|gb|EGC93881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Escherichia fergusonii ECD227]
          Length = 452

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELKG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNANNSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G     +      
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHVIST---T 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITHLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|299131929|ref|ZP_07025124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
 gi|298592066|gb|EFI52266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Afipia sp.
           1NLS2]
          Length = 478

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 208/470 (44%), Positives = 271/470 (57%), Gaps = 3/470 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   LWT   + +A+    +G +P+G V GISIDSR+IAP EA+FAIKG  +DGH F+  
Sbjct: 1   MTGQLWTIAAMAEAMSAERVGALPEG-VTGISIDSRTIAPGEAYFAIKGDVHDGHAFVEA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ G G+ V+     A      +P+  V DVL  L  LA A+R R+ A IIA+TGSVGK
Sbjct: 60  ALKNGGGVAVIAQSHRAEFPD-DLPLLVVPDVLAGLVDLAKASRARAHAKIIAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE L   L +  KT+A   S+NNH GVPL+LAR P    F IFE+GM+H GEI  L 
Sbjct: 119 TSTKEALRTVLQAQGKTHASAASFNNHWGVPLSLARCPSSARFAIFEIGMNHAGEIEPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+S F  L+ K+
Sbjct: 179 KLVRPHLAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPDGAAILNIDNSQFARLRDKA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G+  I +FG++  AD +L       E S +   L    +       G HMA N L  
Sbjct: 239 KASGVSRIVTFGENAKADARLLDVALHGECSAVHADLLHHDVTYKVGVPGRHMAMNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L   ++  AD+  +  AL+ F P  GRG R    L  G  TLIDESYNANPASM AA++V
Sbjct: 299 LAATTLAGADLALSALALAEFRPAAGRGVRQMLELPGGAVTLIDESYNANPASMTAAMNV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q +    GRRIAVLGDM E+G   +  H  LA  ++   I  V+  G  + AL DALP
Sbjct: 359 LGQTAIGPRGRRIAVLGDMLELGPKGRELHGGLAASVAANKIDLVFCCGPLMRALWDALP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +    Y+E    L   + + +  GD ++VK S       ++  L + FP
Sbjct: 419 SAKKGGYAEDSAKLESQLVAGIRAGDAIMVKGSLGSRMKLIVTALEKNFP 468


>gi|312173526|emb|CBX81780.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC BAA-2158]
          Length = 452

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 133/469 (28%), Positives = 209/469 (44%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + Q   G   G      +  ++ D+R  A    F A+KG  +D HDF+  A
Sbjct: 1   MISV-TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  G   ++V+  +      + +P   V D   AL +LA   R +S A I+A+TGS GKT
Sbjct: 58  ITAGCSALLVSKRL-----PVELPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G++NN IGVPLTL R+  +  + + ELG +H GEI + + 
Sbjct: 113 SVKEMTAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 173 LVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  I       +  ++DF        ++ +   +      ++V+    G H   N L   
Sbjct: 233 AKTIWR--FSPEQADSDFYAANVTISAQGTHFTLHSPQGDVDVILPLPGRHNIANALAAS 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      + +     L+D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   
Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467
           S    +      L       L     +  +VK S S    +++ +L E+
Sbjct: 401 SGVGEHFADKAALGARALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|308271436|emb|CBX28044.1| hypothetical protein N47_G33680 [uncultured Desulfobacterium sp.]
          Length = 493

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 142/476 (29%), Positives = 226/476 (47%), Gaps = 19/476 (3%)

Query: 1   MNPL--WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L  WT  ++++A  G ++    +    G+SIDSR+IA  E F AIKG ++DGH F  
Sbjct: 1   MKQLIPWTSEEIIKATGGAAVSGKDKHTFTGVSIDSRTIALGELFVAIKGNNHDGHAFAE 60

Query: 59  HAVQKGAGLVVVNTDMV-----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             V++G   +V+N           + +  +    VD+   AL  LA   R R+  +++AI
Sbjct: 61  AVVEQGIKGIVINKQKAGELLCDKLKNQDVFCIEVDNTTKALGDLAAYNRTRADVSVVAI 120

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT+TKEM    +S    T +  G+ NN IG+PLTL ++     + + ELGM+H G
Sbjct: 121 TGSNGKTSTKEMANAIVSRKFDTLSTTGNLNNEIGLPLTLLKLCSSQKWAVLELGMNHPG 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L  + +P I +IT I   HL     IE + +AK E+ +G++  GT  LN DD    
Sbjct: 181 EIARLAEICKPDIGIITNIGRGHLEGLKTIEGVMNAKGELLDGIKPDGTAILNADDERVM 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  K+     + +  FG S+NA  +    +     +   ++L   S+ V  +  G  M 
Sbjct: 241 CLARKT----TRNVIYFGLSENALIKASSVEVNKNLTSFVLKLPDDSIRVELNAPGRFMV 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +  +L          L  F P +GR             T+ID+SYNANP SM
Sbjct: 297 SNALAAASVGYLLNLSAQEIKSGLENFAPVKGRMNITTLQNG---VTIIDDSYNANPDSM 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AAI  L+ +     G    V GDM E+G  S++ H  + E+ +   I  ++ +G     
Sbjct: 354 EAAIKSLAGLKGKNRG--ALVAGDMLELGIYSETLHKKIGELCAECGIERLYATGQFSSD 411

Query: 414 LKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +          I   ++ + + +   +   L   D +++K S + G  +++  L E
Sbjct: 412 IAAGAIIGGMDISSVFTGSQEDILSDMTEWLRPEDWILIKGSRAMGMEKIVVKLKE 467


>gi|227878360|ref|ZP_03996315.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844403|ref|ZP_05549889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256849209|ref|ZP_05554642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295692131|ref|YP_003600741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Lactobacillus crispatus ST1]
 gi|227862039|gb|EEJ69603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613481|gb|EEU18684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           125-2-CHN]
 gi|256713985|gb|EEU28973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lactobacillus crispatus
           MV-1A-US]
 gi|295030237|emb|CBL49716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus crispatus ST1]
          Length = 455

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 204/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+   +     Q  +  ++ DSR I     F  ++G   DGH+FI  A+  GA  
Sbjct: 6   AEIAKALN-TTCEGDNQTVITSVAFDSRKITDGGLFVPLEGER-DGHEFIASAINNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +             I V  VDD L A+ +LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPEDIAVIEVDDPLAAMQELARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIFNGDEPLLQERAEKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTVNDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R             +++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFTPTANR---MEWEKGDAGESIMSDIYNSNPTAVRAVLTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
            GRRIAVLGDM E+G+ S   H  L + L    I+ V+L G  +  L DAL       H+
Sbjct: 353 NGRRIAVLGDMLELGKNSPELHAGLEDTLDPQIINEVYLYGSEMKNLYDALQDKYEPEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   E  D +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTQEQTDRMIDDLKNDIKSDDIVVLKGSHGMHLENVLARLR 455


>gi|238911181|ref|ZP_04655018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 452

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|297199068|ref|ZP_06916465.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715979|gb|EDY60013.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 466

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 193/473 (40%), Gaps = 22/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V+G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIASVVGGQTHDIPDPSAQVHGPVVIDSRQVKDGSLFAAFVGERVDGHDYAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   V+DV  AL  LA     R  AT++A+TGS G
Sbjct: 60  QAVRAGAVAVLAQRP-------VGVPAIVVEDVQTALGALARHVVRRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSLNNEIGLPLTALTATEETRFLVLEMGARGIGHISYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L   G   LN DD     + ++
Sbjct: 173 TDLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPAEGAAILNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  I     FG+S  AD +    +           L   S         Y        
Sbjct: 233 TKAKVIL----FGESGEADVRAENVRLTDSGQ-PAFMLHTPSGASEVTMRLYGEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP S     +
Sbjct: 288 LAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTIVNDAYNANPES--MRAA 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
           + +  +     R  AVLG M E+G+ + + H  +  +    N+  +    G     L   
Sbjct: 346 LRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 405

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +         +          ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 406 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLD 458


>gi|197302341|ref|ZP_03167400.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
 gi|197298772|gb|EDY33313.1| hypothetical protein RUMLAC_01072 [Ruminococcus lactaris ATCC
           29176]
          Length = 463

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 206/473 (43%), Gaps = 27/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G         + ++IDSR +     F AIKG   DGH FI   + 
Sbjct: 4   MSLKEIAAACGGTYHGDPALLSKEASSVAIDSRKVQKDTLFVAIKGARVDGHSFIPQVMD 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +   D    +G ++ P   V     AL  LA   R      ++ I+GSVGKT+T
Sbjct: 64  QGAICSLSEQD----LGDVTYPYIQVASCTEALKDLAEHYRRSLDIKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+SH G++  L  + 
Sbjct: 120 KEMIASVLSEKYCVLKTEGNFNNEIGLPLTVFNLRKEHEVAVLEMGISHFGDMEPLAKIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I  AHL N    + I   K  +F+ +   GT+ LN DD     L+  +   
Sbjct: 180 RPDVCVITNIGYAHLENLGTRDGILKEKTSMFDFMNPDGTVILNGDDD---KLRGYTSER 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI+ +Y            +  K   + +         S        G HM  N L  + +
Sbjct: 237 GIQPVYFGLDPACPFHAEQIQKMGLKGTVATFVTPSSSFSAHVSIPGDHMISNALAGVAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +  I+ +    P  GR            +T+ID+ YNANPASMK+++ VL+ 
Sbjct: 297 GYALGMKDEEIIRGIEKLVPIAGRNNLIE----AEHYTIIDDCYNANPASMKSSLDVLAF 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                + R +A+LGDM E+G   +  H ++        IS +   G     + +A   + 
Sbjct: 353 ----ADTRTVAILGDMGELGADEKKMHAEVGSYAVKKGISLLICIGTLSAEMANAARTAS 408

Query: 423 H----------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      V++ +T +  +  +   L + D V+VK+S+   F  ++  L 
Sbjct: 409 EASSDSDTKTLVYHFDTKEAFYRQMDQLLKEQDTVLVKASHFMEFPEIVKRLQ 461


>gi|332799090|ref|YP_004460589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
 gi|332696825|gb|AEE91282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Tepidanaerobacter sp. Re1]
          Length = 462

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 211/470 (44%), Gaps = 16/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++++   G  +G      + G+S DSR+I   E F  + GP++DGHDFI  A
Sbjct: 1   MKAL-TIKEVIKYTSGEYLGNQFNIQITGVSTDSRTINKGELFVPLTGPNFDGHDFIERA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +KGA  ++ + +  + + +L I  +  VD+   AL  L+   R       +AITGSVGK
Sbjct: 60  FEKGAAAILCDKNKRSKVDNLPIKNIIFVDNPQSALLSLSAYYRRLFDIPFVAITGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM    L+   K     G+ NN IG+PLT+ R+      G+ ELGMS LGEI  + 
Sbjct: 120 TTTKEMTAEILNMRFKVLKTSGNLNNEIGLPLTIFRLEEGYQVGVVELGMSALGEISRMA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP IAVIT I  AH+      + IA AK EI E L +     LN D       +   
Sbjct: 180 SVVRPKIAVITNIGIAHIEKLGSKQNIARAKMEILEPLGENDLAVLNGDCQELWDARKTI 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +     FG+ +            + +   ++      M       G H   N L  
Sbjct: 240 ----VPKTVFFGQERGDIKARNIKSNSTNELEFDIYGCYGEMTFKALLPGIHNVNNALAA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   +    +   +             R +   +     +ID++YNANP SMK+A+  
Sbjct: 296 IAVGFEMGLTKEEIQQGFLNLKLP---EMRLQFKKSYFGADIIDDAYNANPDSMKSALDF 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q S     +R  +LGDM E+G+LS+  H ++ +  +          G +  + K    
Sbjct: 353 LQQYS--YGKKRAVILGDMLELGDLSEKAHFEIGKYAAER-ADIFIAVGNYAQSFKKGAL 409

Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +      ++H   T+      I+  + D D++++K+S      ++   L+
Sbjct: 410 QGHLDSRYIHTFLTVKEAVGEIKKLVEDCDIILIKASRGMKMEQITQTLV 459


>gi|333010582|gb|EGK30015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri VA-6]
          Length = 452

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 213/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI     
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIARTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S      +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S+  H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEDCHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|42518356|ref|NP_964286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41582641|gb|AAS08252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Lactobacillus johnsonii NCC 533]
          Length = 455

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 217/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S+ +     +  +  DSR   P   F  + G   DGHDF+ +A+  GA 
Sbjct: 5   LAEIAKALN-SSVNMGEDKVITSVVFDSRKATPNSLFIPLDGAR-DGHDFVSNAMANGAE 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +             +PV  V+D L AL  LA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  ATLWKKGHEGM--PTDVPVIEVEDPLTALQNLAKYYLGKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LVRP +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPVTILEMKPSTEILVLEMGMDRPGQLHHLSELVRPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L  +  A   + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIYNGDEP----LLEERAAKIKQE 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  +        ++     +    ++ G + +     IG H   N L  + +    
Sbjct: 237 KSTFGFREEDTVFATTFRSYMHHAT--FEVNGSTQQFKIPMIGKHNVSNALAAISVGRHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   +AL+ F P   R    +         ++D+ YN+NP ++KA  +   Q+   
Sbjct: 295 GENDEQIAQALANFTPTANR---MQWKKGDVGEAIMDDVYNSNPIAVKAVTTSFGQVMVE 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRS 421
             GRRIAVLGDM E+G+ S   H  LA  L    I+ ++L G  +  L DAL       +
Sbjct: 352 DGGRRIAVLGDMLELGDESADLHASLAASLDPAIINELYLYGPEMKNLYDALVDKYPAEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K S+     ++++ L+
Sbjct: 412 LHYYPQDQMNHMIDDLKNDIKPADIVMLKGSHGMHLEKVLDRLM 455


>gi|30248990|ref|NP_841060.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
 gi|30138607|emb|CAD84898.1| murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 452

 Score =  263 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 201/467 (43%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +   A+     G        G+S DSR++ P + F A+ G  +DGH FI  A++ 
Sbjct: 1   MMSTQEAALALHADWSGD--NAVFTGVSTDSRTLKPGDLFIALSGEQFDGHRFISAAIEN 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ D              V D    L +LA + R R    ++A+TGS GKTT K
Sbjct: 59  GAVTAMVSADTAILPTQPDFGWIKVKDTRLGLGQLAASWRRRYTLPLVAVTGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+                 G+ NN IGVP  L ++       + E+GM+H GEI +L+ 
Sbjct: 119 EMIAAIFRCEFGLENVLATTGNLNNDIGVPQMLLQLDSRHVGAVIEMGMNHAGEIAWLSR 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P IAVIT    AH+      E IA AK EIFEGLE+ G   +N DD    L +  + 
Sbjct: 179 LAAPTIAVITNAGTAHIEYLGTTEAIARAKGEIFEGLEEQGVAIINADDPHARLWRQLAG 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G +  +  Q              +QL   ++E+     G H   N L   
Sbjct: 239 NRPVVDFSMNGTAAVSARQP----AHPSGDRWLLQLPDDTIEITLQVPGRHNVYNALAAA 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +       +  + L  F    GR    +         LID++YNANP SM+AA++VL
Sbjct: 295 AAATAAGISTSSIAEGLHSFRGVPGR---LQKKTGLNRSVLIDDTYNANPDSMQAALNVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G++I ++GDM E+G  + +FH  + +  +   +  +   G           R
Sbjct: 352 AEMP----GKKILIIGDMGELGADTATFHHRIGQQAASAGVDILLALGESSRQAVAGFGR 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLE 466
                +   +D L    +S L +  V V+VK S      R+I  L  
Sbjct: 408 G--AQHFADLDTLLEKAKSCLDEQHVFVLVKGSRFMQMERVIEQLQA 452


>gi|161612468|ref|YP_001586433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168234888|ref|ZP_02659946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736510|ref|YP_002113142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|161361832|gb|ABX65600.1| hypothetical protein SPAB_00158 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194712012|gb|ACF91233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291888|gb|EDY31238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322615945|gb|EFY12862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620729|gb|EFY17589.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623919|gb|EFY20756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627367|gb|EFY24158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630674|gb|EFY27438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638106|gb|EFY34807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640592|gb|EFY37243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647733|gb|EFY44218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648082|gb|EFY44549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656886|gb|EFY53172.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657404|gb|EFY53676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663723|gb|EFY59923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666556|gb|EFY62734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672285|gb|EFY68397.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322676403|gb|EFY72474.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679504|gb|EFY75549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686167|gb|EFY82151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195011|gb|EFZ80197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200080|gb|EFZ85167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201099|gb|EFZ86168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209496|gb|EFZ94429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212252|gb|EFZ97076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323216557|gb|EGA01283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219906|gb|EGA04384.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225814|gb|EGA10034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228644|gb|EGA12773.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236742|gb|EGA20818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239757|gb|EGA23804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242195|gb|EGA26224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249381|gb|EGA33297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252286|gb|EGA36137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256624|gb|EGA40354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262993|gb|EGA46543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265478|gb|EGA48974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271734|gb|EGA55152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 452

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|304385543|ref|ZP_07367887.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328047|gb|EFL95269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 459

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 211/467 (45%), Gaps = 20/467 (4%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+          +  V  +  DSR + P   F  IKG   DGH FI  A+Q GA
Sbjct: 5   LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         +P   V+D L AL KLA     +    ++AITGS GKTTTK+M
Sbjct: 64  VATLWAKDH-EDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L++         ++NN IGVP+T+  M  + +  + ELGM   G++ FL+ LV+P 
Sbjct: 123 TAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  AH+  F   + IA AK EI +GL++ G    + D+     L A+       
Sbjct: 183 IAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP----LLAERAKAVDV 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG     D           ++  ++ L    +EV    IG +  +N L  + +   
Sbjct: 239 EQRTFGMKNENDVFASDVAGTDTETSFKINLD-PEVEVKLPIIGEYNVKNALAAITVGDR 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  + +AL+ F        R      +    ++ + YN+NP + KA ++  +    
Sbjct: 298 YHVGVADSARALADF---NLTKNRTEWLKGRQGERILSDVYNSNPTAAKAVLNSFAHT-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------- 418
              GRR  VLGDM E+GE +   H  LA+ L+      V+L G H+ AL   L       
Sbjct: 353 KKTGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYP 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++H++ +  +  L   +Q  +   D V++K+S+     +++  L 
Sbjct: 413 AEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459


>gi|56412396|ref|YP_149471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|62178691|ref|YP_215108.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168230403|ref|ZP_02655461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471375|ref|ZP_03077359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197361332|ref|YP_002140967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|224581967|ref|YP_002635765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|56126653|gb|AAV76159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62126324|gb|AAX64027.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194457739|gb|EDX46578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197092807|emb|CAR58233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205335003|gb|EDZ21767.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|224466494|gb|ACN44324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322713144|gb|EFZ04715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 452

 Score =  263 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|197251461|ref|YP_002145110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215164|gb|ACH52561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 452

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGTESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|254564001|ref|YP_003071096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
 gi|254271279|emb|CAX27291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens DM4]
          Length = 487

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 191/475 (40%), Positives = 267/475 (56%), Gaps = 10/475 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MNDAPLWTPAALEAATGGRLIGTP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A++KGAG  VV             PV  V     D VL A+ +L +AAR R+ A IIA+
Sbjct: 59  AALEKGAGAAVVAEARAKEFEGAG-PVLAVPGEGEDPVLDAMRRLGLAARARTGAAIIAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RMP D  FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEDTRFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A + A     + +FG+ + AD    +     + S ++  + G  +       G H+A
Sbjct: 238 RLLAHAQASRAGRVITFGEHEAADVCAHRILTRPDVSVVDATVMGIPVTYQLGTPGRHVA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS+
Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  
Sbjct: 358 RAALATLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +ALP  +    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 418 LFEALPMPVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|260427172|ref|ZP_05781151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
 gi|260421664|gb|EEX14915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citreicella sp. SE45]
          Length = 477

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 179/476 (37%), Positives = 250/476 (52%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +   A  G   G        G+SID+R+IAP + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTAQEAAAATGGQVAG---DWDATGVSIDTRTIAPGDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+       G     +  VDDV   L KL +AAR R +A ++A+TGSVGKT
Sbjct: 56  LEKGAAAALVSH---VPEGVDPARLLVVDDVQTGLEKLGIAARDRCRAQVVAVTGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L +  K +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 113 STKEMLRCVLGAQGKVHAAEKSYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A++T +APAHL+ F  +E IA  K  IFEGLE  GT  +N D     +L+  + 
Sbjct: 173 MARPHVAMVTIVAPAHLAAFESLEGIAREKGAIFEGLEPGGTAVINGDLPVSPILREMAQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I  FG++     ++ +   C   +  + +    ++       G H A N +  L
Sbjct: 233 ARAAHVID-FGEAAGNHHRVTEVTICDAATVAQGRAWRSNVLYKVAVPGRHFAVNGMGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAA 356
            +   L  D   A+ AL  + P  GRG R          Q    LID++YNANPAS+ A+
Sbjct: 292 AVAHALGLDRALAVTALGQWQPGAGRGLREVVLLDPVETQLTLELIDDAYNANPASLGAS 351

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRRIA +GDM E+GE   + H  LA   S+  I  V   G  
Sbjct: 352 LEVLAAAEPRDGLGRVTHGRRIAYVGDMKELGEGEVAMHRALAGHPSMGKIDVVHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L  ALP     H++E    +   ++  L  GDVV+VK S S    R+++ + +
Sbjct: 412 MRELWTALPYEKRGHWTEDSRAMAARVRHDLDAGDVVLVKGSLSMALSRVVDAIRK 467


>gi|194434430|ref|ZP_03066692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|194417346|gb|EDX33453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 1012]
 gi|332098048|gb|EGJ03021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella dysenteriae 155-74]
          Length = 452

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S      +  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEAVRALQE 448


>gi|16763514|ref|NP_459129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989997|ref|ZP_02571097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168464324|ref|ZP_02698227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197265944|ref|ZP_03166018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198246066|ref|YP_002214076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207855638|ref|YP_002242289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|16418623|gb|AAL19088.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|195632826|gb|EDX51280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197244199|gb|EDY26819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197940582|gb|ACH77915.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205331439|gb|EDZ18203.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|206707441|emb|CAR31714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261245357|emb|CBG23146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991802|gb|ACY86687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301156752|emb|CBW16227.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911093|dbj|BAJ35067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222301|gb|EFX47373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128444|gb|ADX15874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|326621820|gb|EGE28165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
 gi|332987077|gb|AEF06060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 452

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRLVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|52842824|ref|YP_096623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629935|gb|AAU28676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 461

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 139/444 (31%), Positives = 205/444 (46%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN     SI  + I
Sbjct: 33  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----SIDGVHI 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 89  PQFVVASPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 147 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++            I     F     AD   +  
Sbjct: 207 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 263

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +         L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 264 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 323

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR         Q   T+ID++YNAN  S+  A+ VL        GR+I V GDM E+G
Sbjct: 324 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 376

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A        +  + + L   +++ L 
Sbjct: 377 EWTTQHHREVGVAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 434

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 435 PDTTVLVKGSRSSAMENVVHRLVQ 458


>gi|24111531|ref|NP_706041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30061653|ref|NP_835824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|24050289|gb|AAN41748.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039895|gb|AAP15629.1| D-alanine:D-alanine-adding enzyme [Shigella flexneri 2a str. 2457T]
 gi|281599448|gb|ADA72432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2002017]
 gi|313646531|gb|EFS10992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|332762383|gb|EGJ92650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2747-71]
 gi|332764932|gb|EGJ95160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-671]
 gi|332768876|gb|EGJ99055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri 2930-71]
 gi|333022291|gb|EGK41529.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shigella flexneri K-304]
          Length = 452

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPALVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S      +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|183599905|ref|ZP_02961398.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
 gi|188022180|gb|EDU60220.1| hypothetical protein PROSTU_03426 [Providencia stuartii ATCC 25827]
          Length = 457

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 205/474 (43%), Gaps = 25/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M PL T   L     G              ++ +S DSR I     F A+KG  +D HDF
Sbjct: 1   MIPL-TLAQLAAVTAGRLFNAEGIDAATLTLSEVSTDSRQIGQDCLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
               V+ GA  ++V  ++      +  P   V +   ++ +LA   R +S+A ++ +TGS
Sbjct: 60  APSVVENGAVALLVEREL-----DVDCPQVIVANTRLSMGQLAAWVRKQSQAKVVGLTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    LS   KT    G+ NN IGVPLTL R+  + D+ + E+G +H  EI 
Sbjct: 115 SGKTSVKEMTASILSQRGKTLYTAGNLNNDIGVPLTLFRLTHEYDYAVIEMGANHPNEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T++V+P  A++  +  AHL+ F   E +A AK EI++GL   GT  +N D        
Sbjct: 175 YTTNIVKPESALVNNLFAAHLAGFGSPEGVARAKGEIYQGLPDEGTAIVNLDSYSPHW-- 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +         YS      ADF     +     +   +      + +     G H   N+
Sbjct: 233 -QFQPRQTVWYYSLKPQDKADFYPSDIEVKQLSTNFTLHTPVGQIAITLPLPGMHNIANV 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A ++     L+      GR    + +       ++D++YNAN  SM AA
Sbjct: 292 LAASALAISVGATLEDIRNGLATTKAVPGRLYPVQLSPT---KVVLDDTYNANDGSMIAA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I+VL+++     G RI + GDM E+G+ +Q  H  +        +  V   G     +  
Sbjct: 349 INVLAKMP----GYRILIAGDMGELGDYAQDCHQRVGIAAKDAGLDKVLSVGTLSEMISQ 404

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEEF 468
                 H  +      L   +   +   +VV  +VK S S     ++N L E F
Sbjct: 405 FSECGEHFAF---KKDLLTRLIPLVQQNEVVSILVKGSRSSAMEDVVNALKECF 455


>gi|167550681|ref|ZP_02344438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168243461|ref|ZP_02668393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262191|ref|ZP_02684164.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324410|gb|EDZ12249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205337499|gb|EDZ24263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205348731|gb|EDZ35362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 452

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|168820882|ref|ZP_02832882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342449|gb|EDZ29213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084367|emb|CBY94160.1| D-alanine:D-alanine-adding enzyme [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 452

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|320530965|ref|ZP_08031998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
 gi|320136830|gb|EFW28779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas artemidis F0399]
          Length = 468

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 214/466 (45%), Gaps = 16/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T+ ++  A  G  +    +G     GI+ D+R +   + F A++G  +DG DF   A++
Sbjct: 4   MTWDEIRAATGGRLLLGKMRGTDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63

Query: 63  KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+    V+      +  +S  V GV D L A  ++A A R++    ++A+TGS G
Sbjct: 64  AGAVAVMLPEPVSDAHRKELDRMSGAVIGVRDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+   ALS          +YNN IG+PLTL  M  +    + E+GM   G+I  L
Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++T +   H+     IE IA AKAE+   +   G + LN DD+    ++A+
Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKAELVAAIAPGGIVILNADDARVVAMRAQ 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I ++G    AD + +  +    ++   V   G+  +     +G H   N L 
Sbjct: 244 --AADGVRILTYGIRAEADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNALA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L          LS   P + R        + G +T I+++YNA+PASM+AA+ 
Sbjct: 302 ALAAGFALGLSPQEMQAGLSRLAPPKMRY----EVHHVGAWTFINDAYNASPASMRAALE 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
             +++ P   GRRIAVLGDM E+G  S   H  +    +    + V   G     + + A
Sbjct: 358 TTARLYP---GRRIAVLGDMLELGAASAEGHRSVGRTAAAEGFAVVITYGDEARRIYEAA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                   ++ T +     ++  L DGD V+ K S       ++ L
Sbjct: 415 AAAGCLCRHAATHEEAANLLRGMLADGDTVLFKGSRGMRMEHIMEL 460


>gi|229091179|ref|ZP_04222402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
 gi|228692310|gb|EEL46046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus Rock3-42]
          Length = 460

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 209/464 (45%), Gaps = 20/464 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + 
Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++++  
Sbjct: 186 QPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKT 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 +F +    D      +        ++       +V  HG        + + +  
Sbjct: 242 SSVNCKTFSEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAV-- 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    +  K             R++    +  FT+I++++NA+P+SMKAAI  L +
Sbjct: 300 ---GQFYKVSTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQK 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           ++ + +   I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ 
Sbjct: 357 LNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAEFVAEEARKNY 414

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               V   +    +   +   +   DVV++K S       ++  
Sbjct: 415 HIGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQK 458


>gi|315616135|gb|EFU96754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 3431]
          Length = 452

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 215/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSASMEEVVRALQE 448


>gi|15799770|ref|NP_285782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 EDL933]
 gi|15829344|ref|NP_308117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751404|ref|ZP_02776426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755694|ref|ZP_02780701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764035|ref|ZP_02789042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771310|ref|ZP_02796317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776930|ref|ZP_02801937.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781971|ref|ZP_02806978.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789613|ref|ZP_02814620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801513|ref|ZP_02826520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939302|ref|ZP_03084684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208808923|ref|ZP_03251260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208813503|ref|ZP_03254832.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821637|ref|ZP_03261957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398779|ref|YP_002268694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217324303|ref|ZP_03440387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791223|ref|YP_003076060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226843|ref|ZP_05941124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255247|ref|ZP_05947780.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291280911|ref|YP_003497729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|12512789|gb|AAG54390.1|AE005185_7 D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
 gi|13359546|dbj|BAB33513.1| D-alanine:D-alanine-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767755|gb|EDU31599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014528|gb|EDU52650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000388|gb|EDU69374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357005|gb|EDU75424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359914|gb|EDU78333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365891|gb|EDU84307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370782|gb|EDU89198.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376363|gb|EDU94779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208728724|gb|EDZ78325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734780|gb|EDZ83467.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741760|gb|EDZ89442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160179|gb|ACI37612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746584|gb|ACI71599.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746586|gb|ACI71600.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746588|gb|ACI71601.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746590|gb|ACI71602.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|209746592|gb|ACI71603.1| D-alanine:D-alanine-adding enzyme [Escherichia coli]
 gi|217320524|gb|EEC28948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590623|gb|ACT69984.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanin e ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|290760784|gb|ADD54745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. CB9615]
 gi|320190391|gb|EFW65041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. EC1212]
 gi|320642125|gb|EFX11476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647488|gb|EFX16283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652822|gb|EFX21060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320658211|gb|EFX25940.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663520|gb|EFX30804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668832|gb|EFX35627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345194|gb|EGD68937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1125]
 gi|326346952|gb|EGD70686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli O157:H7 str. 1044]
          Length = 452

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFAEKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|283771251|ref|ZP_06344140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459456|gb|EFC06549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Staphylococcus aureus subsp. aureus H19]
          Length = 438

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 133/443 (30%), Positives = 211/443 (47%), Gaps = 15/443 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +NG++IDSR+I+    F   KG + DGH F+  A+Q GAG             ++S 
Sbjct: 9   NQEINGVTIDSRAISKNMLFIPFKGENVDGHRFVSKALQDGAGAAFYQR-GTPIDENVSG 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA A        +IA+TGS GKTTTK+M+   L +  K     G+Y
Sbjct: 68  PVIWVEDTLTALQQLAQAYLRHVNPKVIAVTGSNGKTTTKDMIESVLHTEFKVKKTQGNY 127

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLT+  +  D +  I E+GMS   EI FL++L +P IAVIT I  +H+ +    
Sbjct: 128 NNEIGLPLTILELDNDTEISILEMGMSGFHEIEFLSNLAQPDIAVITNIGESHMQDLGSR 187

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA AK+EI  GL+  GT   + D+   +    +          S G + +        
Sbjct: 188 EGIAKAKSEITIGLKDNGTFIYDGDEPLLKPHVKEVENAK---CISIGVATDNALVCSVD 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            + +      +  +      +    G H  +N  + + +   L    +T  + L      
Sbjct: 245 DRDTTGISFTINNKEHYDLPIL---GKHNMKNATIAIAVGHELGLTYNTIYQNLKN---V 298

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              G R      +   T+I+++YNA+P SM+AAI  LS ++    GRRI +LGD+ E+GE
Sbjct: 299 SLTGMRMEQHTLENDITVINDAYNASPTSMRAAIDTLSTLT----GRRILILGDVLELGE 354

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLV 442
            S+  HI +   L   +I  ++  G     + D+  + +    +  + D +   + S L 
Sbjct: 355 NSKEMHIGVGNYLEEKHIDVLYTFGNEAKYIYDSGQQHVEKAQHFNSKDDMIEVLTSDLK 414

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             D ++VK S       ++N L+
Sbjct: 415 AHDRILVKGSRGMKLEEVVNALI 437


>gi|194444164|ref|YP_002039356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402827|gb|ACF63049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 452

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ HI + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHIQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|149177965|ref|ZP_01856562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
 gi|148843158|gb|EDL57524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Planctomyces
           maris DSM 8797]
          Length = 470

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 146/465 (31%), Positives = 226/465 (48%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   ++Q  +G +  +     V GISIDSR+    + FFAI+G  +DGH F+  A+ +GA
Sbjct: 8   TISQVIQ--RGATNPLQELAEVAGISIDSRTAKEDDLFFAIQGKRFDGHQFVNQALTRGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV    V   GS    +  VDDV  AL + A   R +  A +I +TGSVGKTTT+ M
Sbjct: 66  AACVVKRGEVTDPGSQ--LLLEVDDVNHALMQFARWYREQQSARVIGVTGSVGKTTTRSM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  ALSS         ++NN  GVPL++A +     F + EL  SH+GEIR L  +  P 
Sbjct: 124 IYTALSSCLTGIQSPANFNNEFGVPLSIAGIESSHQFAVLELAASHVGEIRELAAIALPQ 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +HL +F  +++IA  K E+FE L  TG   +  DD F + L +++ A  + 
Sbjct: 184 IGVITAIGHSHLEHFGTLQQIAETKGELFEQLPATGLAIVCGDDPFADCLASRTTARKV- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G  +N D Q    +Q  +     V  Q    + +   +G H     L  + +   
Sbjct: 243 ---RIGLGENNDLQAVSIEQDQQGISFRVNGQ----QYLLPVVGRHFVNAALAAIAVARE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        ++L  +    GR  + +     G +T+ID++YNA+P SM+AA  VL     
Sbjct: 296 LGISEQDVAESLRNYSTVPGRCHQMQ----IGDWTVIDDTYNASPDSMRAACQVLHDHV- 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
            G G+RI VLGDM E+G  ++ +H +L  ++    +  ++  G    ++      +    
Sbjct: 351 -GTGKRIMVLGDMLELGPETERYHRELGILVCQAGVDLLFACGKQATSVAQGARSAGMSH 409

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  +  ++ L   +   L  GDVV+VK S      RL+  L +
Sbjct: 410 TKIITAADVELLAEDVTDLLEPGDVVLVKGSRGMRMERLLQHLQQ 454


>gi|197116885|ref|YP_002137312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
 gi|197086245|gb|ACH37516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Geobacter
           bemidjiensis Bem]
          Length = 469

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 143/469 (30%), Positives = 209/469 (44%), Gaps = 17/469 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV 
Sbjct: 2   AMFTLNEIAEATGGRVIGEAA-GEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVS 60

Query: 63  KGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KG  + +      A            V D L AL  LA   R R     + +TGS GKTT
Sbjct: 61  KGVTIFLAEESWAAKHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  L  +
Sbjct: 121 TKEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + +IT   PAHL     +E +A AK E+F  L+       N DD     L +    
Sbjct: 181 AEPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDP----LVSTCPT 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T  +FG                      ++L     +V     G H   N L    
Sbjct: 237 HLNVTRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L    D   + L  F P + R +    A      TLID+SYNANPASM AA++ L 
Sbjct: 297 AAHALGVPGDLIRQGLEEFSPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALTTLK 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++   GEGR +AVLGDM E+G  ++  H +L ++ +  N+  ++L G  V         +
Sbjct: 353 EL--QGEGRLVAVLGDMLELGLGTEEAHRELGKLAA-GNVDRLYLLGKLVEETAKGALEA 409

Query: 422 I----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +      D L   + S +  GD ++ K S      ++  L+ +
Sbjct: 410 GLPAADLVLGRDHDQLAQELLSFVQPGDCILFKGSRGMKMDKVAQLVRQ 458


>gi|218687963|ref|YP_002396175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
 gi|218425527|emb|CAR06310.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Escherichia coli ED1a]
          Length = 452

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFTDQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|39936596|ref|NP_948872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650452|emb|CAE28975.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 479

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 199/469 (42%), Positives = 258/469 (55%), Gaps = 2/469 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A+     G +P   V GISIDSR++AP +A+FAIKG  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV     A       P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +   T+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +V
Sbjct: 123 KEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPADTRFAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +   
Sbjct: 183 RPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L  
Sbjct: 243 SVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL +
Sbjct: 303 AELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGR 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
               G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL    
Sbjct: 363 AEVSGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              Y+     L   + +++  GDVV+VK S       ++  L + FP  
Sbjct: 423 RGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFPGT 471


>gi|194448592|ref|YP_002044094.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194406896|gb|ACF67115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
          Length = 452

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 214/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H G I +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGAIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|78042842|ref|YP_360892.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77994957|gb|ABB13856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 458

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/458 (28%), Positives = 199/458 (43%), Gaps = 23/458 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + +   G  +G         +S D+R++ P   F A+ G   DGH+F+  AV KGA 
Sbjct: 6   ASTIARVTGGVLLG--EDREFTEVSTDTRTLKPYALFVALHGEKLDGHEFVPDAVAKGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VVV         S+++    V D   AL +LA+  R +    +I ITGS GKTTTK+++
Sbjct: 64  GVVVERPF-----SINVTQIVVKDTFRALQELALYNRQKEGLKVIGITGSNGKTTTKDLV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L       A   ++NN +GVPLTL     + + GI E+GM  LGEI  L  + RP I
Sbjct: 119 KAVLRQKYNVCATEKNFNNELGVPLTLLNFDENTEVGIVEMGMRGLGEIDALCQVARPDI 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I  AHL      E IA AK+E+ + L   G   +N +  + + + A         
Sbjct: 179 GIITNIGEAHLELLKSQENIARAKSELIKNLPGDGVAIINGESPYIKEIVANIPVKKYFF 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +  G     D  ++K+ Q  +     +       E      G H A N L  +     L
Sbjct: 239 GHRAG-----DLYIKKFSQEDDG-LRFITAGILEEEFFLPLFGVHNAVNALAAILTALTL 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V    K LS       R          G   +I + YNA+P SM+AA+ VL+     
Sbjct: 293 GVRVPLIKKGLSEVELTGMRL----EIQFIGSMKIIKDYYNASPTSMEAALKVLAGTGQK 348

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---- 422
             GR+IAVLG+M E+G+   + H  + EV S   +  +   G     + +          
Sbjct: 349 --GRKIAVLGEMYELGDFETTGHRRVGEVASKLGVDFLITVGPKAREIGNGALAGGMSPQ 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           ++ +  T +    F+ + L   D V++K+S    F  L
Sbjct: 407 NIFHFATKEEAGSFLLNFLKPEDTVLLKASRGMKFEEL 444


>gi|302868928|ref|YP_003837565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
 gi|302571787|gb|ADL47989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Micromonospora aurantiaca ATCC 27029]
          Length = 469

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 204/474 (43%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A+ G  +G  P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAAAVDGRLVGADPDARVTGTVEFDSRKVNRGGLFVAFPGERVDGHDYAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A+  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AISAGAVAVLGTREVS------GVPMVLVGDALDAMGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   +  + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLAVRLGPTVAPPGSFNNELGHPYTALQATPETRYLVMEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   + + ++
Sbjct: 174 CDVVPPRISVVLNVGVAHLGEFGSVETIALAKGELVEALPSDGLAVLNADDPRVDAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G+S+ AD +          +    +     S  V     G H   N L
Sbjct: 234 TRA----RVVRYGESERADVRAVDVTLDGRGRPSYTLVTPEGSAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL+       R             T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVGRELGLPLPDLAAALNELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTGVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +   GEGR +AVLG M E+G+     H  +  + +   +  + + G     + + 
Sbjct: 348 RALASMR--GEGRTVAVLGYMAELGDFELQGHQQVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                                  ++S L  GDVV+VK S     + + + L  +
Sbjct: 406 ATAVGNWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALRAD 458


>gi|163751820|ref|ZP_02159036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
 gi|161328305|gb|EDP99466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           benthica KT99]
          Length = 455

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 152/467 (32%), Positives = 224/467 (47%), Gaps = 23/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL     + Q +    +G    G    +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-NLSGICQRLNARLVG--ADGEFRHVSSDSRVIPEHTLFVALKGEKFDGHDFANMA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+ ++      L+I    V D   A+  L    R   +   +A+TGS GKT
Sbjct: 58  VENGATALLVDHEL-----PLNIAQLIVKDTQKAMGDLGAYLRELIQPKSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+  D +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHQGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A AK+EIF  L  TGT  +N DD F  ++ + S 
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVACAKSEIFNHLAATGTAVINADDQFASVMLSASM 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMT 299
           +    T  +FG    AD Q    +  S   +       +   ++     G H   N L  
Sbjct: 233 S---FTQLTFGVESEADIQASDLEADSVGCYRFKLSYMQESVLIALPLSGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I       +D     LS+  P +GR    +     G   +ID+SYNANPAS+ AAI  
Sbjct: 290 TAICLSFGLTLDEIKLGLSLLLPVKGRMLPTQ----LGRVRVIDDSYNANPASVTAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    EG R  VLGD+ E+G+ +   H +L E++    +  ++  G        A  
Sbjct: 346 LQEI----EGHRCLVLGDLGELGDNASLLHTELGELIKQRGLDSLFTLGELSANASRAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465
              H+     ++ L   I+     GDV V+VK S S    R++  L+
Sbjct: 402 VDGHISLERLVEDLIKNIKQL--QGDVTVLVKGSRSAKMERVVEALI 446


>gi|114330277|ref|YP_746499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosomonas eutropha C91]
 gi|114307291|gb|ABI58534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosomonas eutropha C91]
          Length = 457

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 208/468 (44%), Gaps = 16/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +   A+  +S          G+S DSR++ P + F A+ G  +DG  FI  A++K
Sbjct: 1   MMSVQEAALALHANSNWSGGNPIFTGVSTDSRTLRPGDLFIALSGEQFDGQHFISTAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+TD V            V+D      +LA   R      ++A+TGS GKTT K
Sbjct: 61  GAVAAMVSTDTVIVPTKSDFGWIKVNDTRLGFGQLAANWRQHFTLPLVAVTGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+         +       G+ NN IGVP  L ++       + E+GM+H GEI +L+ 
Sbjct: 121 EMIAAIFRHEFGSGNVLATTGNLNNDIGVPQMLLQLNTGHTCAVIEMGMNHAGEIAYLSQ 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P IAVIT    AH+ +    E IA AK EIF GL   G   +N DD++ +L +    
Sbjct: 181 LAAPTIAVITNAGTAHIEHLGTTEAIARAKGEIFTGLGAQGIAIINADDAYAQLWRQ--- 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + I  FG +  A  + ++    SE +   +QL    +E+     G H   N L   
Sbjct: 238 LAGSRQILDFGITNPAAIRAQQMSSSSE-AAWLLQLPDDKVEITLQVPGRHNIYNALAAA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +       +  + L  F    GR    +  +      LID++YNANP SM+AA++VL
Sbjct: 297 AAATAAGISTTSIAEGLHNFMGTPGR---LQKKVGLYQSILIDDTYNANPDSMQAALNVL 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G++I ++GDM E+G  +  FH  + +  +   I  +   G            
Sbjct: 354 AEMP----GKKILIMGDMGELGTDAAGFHYTIGQQAAKAGIDALLALGELSQQTVAGFGS 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                Y   +D L    +  L     V+VK S      R+I  L + +
Sbjct: 410 G--AQYFADLDTLLEKAKDCLGKNVSVLVKGSRFMRMERVIEQLQDRY 455


>gi|204926764|ref|ZP_03217966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323429|gb|EDZ08624.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 452

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLSAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|269137991|ref|YP_003294691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|267983651|gb|ACY83480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda EIB202]
 gi|304558038|gb|ADM40702.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Edwardsiella tarda FL6-60]
          Length = 458

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 203/463 (43%), Gaps = 21/463 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L  AI    IG      V  ++ D+R + P   F A++G ++DGHDF   A
Sbjct: 1   MIA-TTLQTLADAIGATLIG--ADSPVTAVTTDTRKLTPGCLFVALQGDNFDGHDFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS GKT
Sbjct: 58  REGGAGALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G+ NN IGVPLTL R+    DF + ELG +H+GEI +   
Sbjct: 113 SVKEMSAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +E  +    
Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLSGVAQAKGEIFAGLPPQGTAIVNADSNDWENWQHALT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S       DF     +  +  +   +       +V+    G H   N L   
Sbjct: 233 EQRVWR-FSPQAGAGVDFYASAVRSDAAGTHFTLHTPAGQCDVLLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L+      GR    R         L+D+SYNAN  SM AA  VL
Sbjct: 292 ALTMSVGATLTQVQQGLAGLQAVPGRLFPIRL---GEHQLLLDDSYNANVGSMSAAAEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G  +++ H  + +      I  V   G     + +A   
Sbjct: 349 GHMP----GYRVMVVGDMAELGAEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461
           S    +      L   ++  L +     ++VK S S    +++
Sbjct: 402 SGCGEHFMDKTALIERLKHLLCEHAAITILVKGSRSAAMEQVV 444


>gi|16759119|ref|NP_454736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140669|ref|NP_804011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052853|ref|ZP_03345731.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426159|ref|ZP_03358909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213581232|ref|ZP_03363058.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|289823738|ref|ZP_06543350.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25529121|pir||AI0517 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16501409|emb|CAD01281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136293|gb|AAO67860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 452

 Score =  262 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 213/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|289423083|ref|ZP_06424898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156414|gb|EFD05064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 467

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 222/475 (46%), Gaps = 19/475 (4%)

Query: 1   MNPLWTFHDLLQAI-----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L    ++L+A       G  +    +  ++ I IDSR   P   F AI G + DGH 
Sbjct: 1   MISLK-IKEVLEATRGQKSNGRLVIGDLEASLSSIVIDSRQAGPDTMFIAIIGENTDGHK 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +I  A   G    +V+ ++          +  VD+   A+ +LA   + +    ++ ITG
Sbjct: 60  YIKSAYDLGCRTFMVSQELDILDQLDGSSIVCVDNTELAMGQLAKYYKNKFDIPVVGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTT++M+   +S+  +T     + NN  GVPLT+  +    +  + E+GMS  GEI
Sbjct: 120 SVGKTTTRDMVYAVVSNKFRTLKNEKNLNNQFGVPLTIFNLDSSYECAVIEMGMSGFGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  +VRP IAVI+ I  +H+ +    E I  AK EI +   +   + +N DD +   L
Sbjct: 180 DYLADIVRPDIAVISNIGTSHIEHLGSQEGIFKAKMEISDYFSEDSCLIVNGDDEYLSKL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A+  A+   ++ SFGK       L+  +    ++   V+L+ K  E     +G H   N
Sbjct: 240 RAEKDAIS-YSLCSFGKDWKNTIVLKSIENLDNKTNFVVKLEDKEEEFSIPTVGEHNVYN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +   L  ++D   + L  F     R    +  +N G + +I++ YNA+P SM  
Sbjct: 299 AMSAILVGLRLGMNIDEIRQGLMNFVATGDR----QNIINTGKYLVINDVYNASPDSM-- 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I+ L  ++ + + R++A+LGD  EMG+  +  H  +       +   +   G     + 
Sbjct: 353 -IASLKVLALNKDRRKVAILGDCLEMGDYEEEGHRRVGLQSVRRS-DVIITQGKAARFIG 410

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                      ++++ +T   L   +++ L D D ++VK+S    F  ++N L E
Sbjct: 411 IEAQEHGFDLSNIYHFDTKKELIEDLKNILEDQDAILVKASRGMAFEDIVNYLKE 465


>gi|189219425|ref|YP_001940066.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186283|gb|ACD83468.1| UDP-N-acetylmuramyl pentapeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 459

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 212/464 (45%), Gaps = 15/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + +   G  IG     +++ I  DSR +   + F A+KG ++DG DF+  AV KGA
Sbjct: 5   SIERIAKWTGGELIGDKTSCWISSICTDSRVLKAGDCFVALKGKNFDGVDFVPDAVSKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V+  M    G L++PV  V D L AL  +A+  R    A IIAITGS GKT+TKEM
Sbjct: 65  AAVIVDR-MQPGFGPLAVPVIKVKDTLKALQDIALFYRKELGAKIIAITGSSGKTSTKEM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    KT    G++NN IG+PL+L +M    ++G+FELG +H GEI  L+ ++ P 
Sbjct: 124 VGSVLRQKYKTVCTSGNFNNQIGLPLSLLQMDKTTEYGVFELGTNHPGEIATLSRIIAPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I  AH+ +F  +E IA  K ++        +          +    + H     
Sbjct: 184 IVIVTNIGSAHVGHFGSVEAIAQEKTDL----LTFVSARGFAILGTDDFWSKRLHVRSAG 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G  +N+   L +           +  + +  EV    +   MA+N L    +  +
Sbjct: 240 RVIWVGDRQNSLCWLDRIGITQRGIRYGICRRKEKFEVFLPTVSREMAKNSLFAAAVGFL 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            +   +   + L      EGR   +          ++D+SYNANP SM +A+  L +   
Sbjct: 300 SSLSSEEITRGLEKTSFPEGRLTVHPIKNGF----VLDDSYNANPQSMLSALRALVEYPF 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-- 423
             +   I VLG M E+G+ +++ H ++        +SHV + G +   + + L  S    
Sbjct: 356 SSKK--IVVLGSMGELGDKARASHFEVGSFAGGLPLSHVIVVGPYGEDVYEGLRSSSFPI 413

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  +   +  F  +   L     V+VK S       ++  LL
Sbjct: 414 DCIFRTADTEEAFFCLHKLLNGNVTVLVKGSRFLKLDMIVKKLL 457


>gi|58584496|ref|YP_198069.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418812|gb|AAW70827.1| UDP-N-acetylmuramyl pentapeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 455

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 150/466 (32%), Positives = 237/466 (50%), Gaps = 16/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G             IS D+R+I   + F A+KG ++DGHDF+  A  KG
Sbjct: 4   WNTNNIIDATGGRGKSGCHNL---NISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   VV+ D        ++PV  V D L AL+ +A          A +IAITGSVGKTTT
Sbjct: 61  AAAAVVSEDKY-----RNLPVIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++   G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 116 KDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSKIS 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I P H+ NFS + +IA AK EI  G++  GT+ LN D+ +++ L +     
Sbjct: 176 NPNIAVITNIEPVHVENFSSLFDIAQAKLEILYGVKNNGTLILNKDNKYYDYLLSHVDRD 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    S   +      ++  K     +        + M       G H   ++L  + +
Sbjct: 236 VVSFGRSESATVCLLNVIKNDK---GLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAV 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  ++     AL  F+  +GRG  ++   N     LID+SYNA+PASMKAAI  L  
Sbjct: 293 IQNLGLNLSKLPLALENFNITKGRGSVHKAKYNGKCIHLIDDSYNASPASMKAAIRTLGI 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S   +   +A+LGDM E+G  S +FH+ L + +  Y++  V+  G  +L L   LP +I
Sbjct: 353 YSNRRK---VALLGDMLELGNKSITFHMKLLDSIVKYDVDKVYTVGKFMLKLHRLLPGNI 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +    + L   + + + + DVV+VK S       ++   + E+
Sbjct: 410 KGTHFNDSNQLKSNLANIVQNNDVVLVKGSRGVKMDFIVQGFIIEY 455


>gi|311895542|dbj|BAJ27950.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Kitasatospora setae KM-6054]
          Length = 467

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 202/476 (42%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  +  QA+ G   G  PQ  + G +  D+R I P   F  ++G   DGHD+   
Sbjct: 1   MIAL-TLAEAAQAVGGTLDGADPQALITGAVVTDNRRIEPGGLFVCVRGERVDGHDYAAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVG 118
           AV  GA  V+           + +P   VDDV+ AL +L        +   I+ +TGS G
Sbjct: 60  AVADGAVAVLATRP-------VGVPAILVDDVVVALGRLARAVVARAADVRIVGLTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L+   +T    GS NN IG PLT  R+       + E+G  H G+I +L
Sbjct: 113 KTSTKDLIAQVLAGHGETVFPAGSNNNEIGHPLTALRIAPSTRHLVMEMGARHKGDIEYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P + ++  I  AHL  F   E IA AK E+ E L   G   LN DD     + ++
Sbjct: 173 TGITPPTVGLVLNIGTAHLGEFGSREGIAEAKGEMVEALSPEGVAVLNADDPLVRAMSSR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     +  FG+S +A  +    +  +     +  L   +         Y        
Sbjct: 233 TRA----RVVLFGESPDAHVRATDVRLDATG-RPQFTLSTPAGSAPVRLRLYGEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +   +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 288 LAAAAVAVELGMPVDRVAEALSEAGALSRWRMEVVDRADGLTVVNDAYNANPESMRAALR 347

Query: 359 VLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK 415
            L+ ++  G    R  AVLG+M E+GE S   H  +  +    +I+ +    G     ++
Sbjct: 348 ALATMAGTGPERRRTWAVLGEMRELGEDSLDEHDTIGRLAVRLDITKLVAVGGREAARME 407

Query: 416 DALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                              D     ++S +  GDVV+VK+S S G  R+   LL +
Sbjct: 408 LGARNEGSWGEESVLVSDADAAIELLRSQVRPGDVVLVKASRSVGLERVAEALLAD 463


>gi|192292418|ref|YP_001993023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286167|gb|ACF02548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris TIE-1]
          Length = 479

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 200/469 (42%), Positives = 259/469 (55%), Gaps = 2/469 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A+     G +P   V GISIDSR++AP +A+FAIKG  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMAATRSGTLP-RDVYGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV     A       P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVEKAQRAKFAP-DAPLLVVDDVLEGLRQLGIAARSRLPAKVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +   T+A + S+NNH GVPL+LAR PVD  F +FE+GM+H GEI  L  +V
Sbjct: 123 KEGLRGVLGAQGATHASVASFNNHWGVPLSLARCPVDSRFAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPHIA+ITT+   HL  FSGIE IA AK+EIF GLE  G   LN D   F+ L + +   
Sbjct: 183 RPHIAIITTVEAVHLEFFSGIEGIADAKSEIFTGLEPGGIAVLNRDTPMFDRLCSNALRA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L  
Sbjct: 243 NVGRIVTFGADPAADARLLDVALHADCSAVHASILGHDVTYKLGMPGRHMALNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +  AD+  A  ALS   P  GRG R    +  G  TLIDESYNANPASM AA+ VL +
Sbjct: 303 AELAGADLALAALALSQVAPAAGRGVRKPLPVGSGEATLIDESYNANPASMAAALGVLGR 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
               G+GRRIAVLGDM E+G      H  L E +    I  V+  G  +  L DAL    
Sbjct: 363 AEISGQGRRIAVLGDMLELGPRGPELHRGLEEAVRANGIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              Y+     L   + +++  GDVV+VK S       ++  L + FP  
Sbjct: 423 RGGYAGDAAALESQVVAAIRAGDVVMVKGSLGSRMKTIVTALEKRFPGT 471


>gi|170748779|ref|YP_001755039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655301|gb|ACB24356.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 482

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 183/473 (38%), Positives = 256/473 (54%), Gaps = 8/473 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +L  A  G   G   +  ++G SID+R++ P + FFAI+G   DGHDF+  A
Sbjct: 1   MTALWTREELESATGGCLTG--AERAISGASIDTRTLQPGDLFFAIRGDARDGHDFVPDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAITG 115
           + +      V +   A   +   PV  V     D VL A+ +L  AAR R+ A ++A+TG
Sbjct: 59  LGR-GAGAAVVSAARAEALAAHGPVLAVPEGGADPVLTAMVRLGAAARARTSAQVVAVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKT TKE L   LS   +T+A   SYNNH GVPLTL RMP    +G+FE+GM+H  EI
Sbjct: 118 SVGKTGTKEALRHVLSEQGETHASAASYNNHWGVPLTLTRMPRSARYGVFEIGMNHGAEI 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  VRP IA+ITTIAPAH+ +F+ +  IA AK EIF GL   G   LN D   F+ L
Sbjct: 178 VPLTAQVRPDIALITTIAPAHIEHFASLAAIADAKGEIFSGLRPGGVAILNRDAPHFDRL 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A + A     + +FG+  +AD +  K     + S ++  + G+ +       G H A N
Sbjct: 238 AAHAQASRAGRVVTFGEHPDADVRALKIVLRPDLSVIDAAVMGQPVTYKLGTAGRHAALN 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +V  L AD+  A  +L    P  GRG+R    +  G   L+DESYNANP +++A
Sbjct: 298 SLGVMAVVHSLGADLARAALSLGGLTPPAGRGERTALEIGGGTAYLVDESYNANPVAVRA 357

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++ L+ I     GRRIAVLGDM E+G  +   H  LAE +    +  V+ +G  +  L 
Sbjct: 358 ALATLAGIETGPRGRRIAVLGDMLELGAAAPDLHRGLAEAIEAARVDLVFTAGPLMRNLF 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +ALP S     ++T   L   +  +L  GD V+VK SN     R++  L   +
Sbjct: 418 EALPVSRRGAVADTAADLLEPLARTLRSGDAVMVKGSNGSRMGRIVEALKARY 470


>gi|332653073|ref|ZP_08418818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
 gi|332518219|gb|EGJ47822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcaceae bacterium D16]
          Length = 461

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 190/465 (40%), Gaps = 16/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL+A+ G  +G        V+G+  DSR I P   F  + G  +DGH +I  A++ 
Sbjct: 5   TVGQLLEAVHGTLLGGSQDMELTVSGVDTDSRDIHPGSLFIPLVGERFDGHAYITSALEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +                  V +   AL  LA   + R +   + ITGSVGKTT K
Sbjct: 65  GAAGCLTARVRTDYRE--DKFYIQVGNTERALRDLAAWYKDRFQIPFVGITGSVGKTTAK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   K     G++NN+IG+PLTL R+      G+ E+GM   GEI +L+ +VR
Sbjct: 123 DMIAAVLSVKYKVLKTEGNFNNNIGLPLTLLRLDHTHQVGVLEMGMDKPGEIDYLSDIVR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHAL 242
           P + VIT I  AH+      E I  AK E+   + K    + LN DD     L+ K+   
Sbjct: 183 PEVGVITNIGDAHIEKLGSRENIFKAKCELLPNIRKENGLVVLNADDPMLTTLRGKTPVQ 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +      A                 +       +V    +G HM    L+   +
Sbjct: 243 AVFCGKAEDADYRAQVTGGDGVSHIH---CHITTPKMERDVKIPALGEHMIYPTLIAAAV 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   D     ++ F P   R    +        T++D+SYNANP SM    + +S 
Sbjct: 300 GEHFGLTPDEIEDGIARFVPTRMRMNVIQREGE---ITILDDSYNANPQSM---RAAISV 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++      ++A+LGDM E+G  + + H  + + L    I  +   G     +      + 
Sbjct: 354 LADTHSSWKVAILGDMFELGPYAPALHAGVGDYLGKRGIDCLVAVGKLSEHMAQGAREAG 413

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V+     +   + +   +     ++VK+S       L   LL
Sbjct: 414 VPMVYSCADKEAAKVVLPQVVRPDSTILVKASRGMALEELTAQLL 458


>gi|270290189|ref|ZP_06196415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
 gi|270281726|gb|EFA27558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Pediococcus
           acidilactici 7_4]
          Length = 459

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 209/467 (44%), Gaps = 20/467 (4%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+          +  V  +  DSR + P   F  IKG   DGH FI  A+Q GA
Sbjct: 5   LSEIARALGVDEYPDQWNEVSVTSVQFDSRQLTPGSLFVPIKGQR-DGHQFIEQAIQAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         +P   V+D L AL KLA     +    ++AITGS GKTTTK+M
Sbjct: 64  VATLWAKDH-EDTRPADLPSIEVEDPLAALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L++         ++NN IGVP+T+  M  + +  + ELGM   G++ FL+ LV+P 
Sbjct: 123 TAAVLATEFNVVKTEANFNNEIGVPITILGMNANTEVLVVELGMDRPGQLHFLSELVQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  AH+  F   + IA AK EI +GL++ G    + D+     L A+       
Sbjct: 183 IAVITMIGEAHIEFFKTRDRIADAKMEITDGLKEDGCFIYDGDEP----LLAERAKAVDV 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               FG     D           ++  +  L    +EV    IG +  +N L  + +   
Sbjct: 239 EQRMFGMKNENDVFASDVAGTDTETSFKTNLD-PEVEVKLPIIGEYNVKNALAAITVGDR 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               V  + +AL+ F        R      +    ++ + YN+NP + KA ++  +    
Sbjct: 298 YHVGVADSARALADF---NLTKNRTEWLKGRQGERILSDVYNSNPTAAKAVLNSFAHT-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------- 418
              GRR  VLGDM E+GE +   H  LA+ L+      V+L G H+ AL   L       
Sbjct: 353 KKTGRRFVVLGDMLELGENADQMHAQLADSLNPAQFEEVFLVGQHMRALGKRLVDEEIYP 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++H++ +  +  L   +Q  +   D V++K+S+     +++  L 
Sbjct: 413 AEAVHLYDANELPQLTTDLQQMIKADDCVLLKASHGIHLEKVVEQLK 459


>gi|193214545|ref|YP_001995744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088022|gb|ACF13297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 473

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/479 (28%), Positives = 208/479 (43%), Gaps = 22/479 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L + +DL +   G   G   +   NG+     +IDSR I+  E FFA+KG H DGH 
Sbjct: 1   MAQL-SLNDLEEI--GTLFGQKERVA-NGVHHPVAAIDSRKISGGEIFFALKGEHTDGHA 56

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSK 107
           F+  A + GA L VV+T+   +                  V D L AL KLA   R +  
Sbjct: 57  FVQTAFENGAALAVVSTEWFENTRQAQPNAHFFTENLFLSVQDPLVALQKLANRYRKKFP 116

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I+ I GS GKTTTKEM    L +  +  A  G++NNHIGVPLTL R+  D +  + E+
Sbjct: 117 IPIVTIAGSNGKTTTKEMTAAVLGTTFRVVATEGNFNNHIGVPLTLFRLRDDTEIAVVEM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G++H GE+  L  +  P   +IT I   H       EEIA A+ E++  L +TG      
Sbjct: 177 GINHHGEMNELCQIAEPTHGLITNIGHEHCEFLGTPEEIAMAEGELYRYLSRTGGSGFVN 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D       A    L               +           +  ++    +++ +    
Sbjct: 237 ADDGLASQTAGELNLQTLYGIEQPNLGLNIWAKEVQLNQQGCASFKICTPKQALTLNLQI 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    I     A +++   AL  F PK G  +  R        T++++SYN
Sbjct: 297 SGRHNVYNALAAAAIGLNFGAKLESVKLALEHFVPKSGSKRMERICA--AGLTILNDSYN 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM++A+  L+ +    +G++I +LGDM E+G +S++ H  L E +    I   +  
Sbjct: 355 ANPESMRSALGTLASL--ICDGKKIVLLGDMLELGSVSETEHRKLGEFIEAAGIDLFFGF 412

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G  +       P     H   T   +   ++     GD ++ K S       ++  LL 
Sbjct: 413 GNAMKWTCQEAPNKCKGH-FNTKSEMVQALKEVAAPGDALLFKGSRGMKMEEVLEALLA 470


>gi|292489361|ref|YP_003532248.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
 gi|292898415|ref|YP_003537784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198263|emb|CBJ45369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           amylovora ATCC 49946]
 gi|291554795|emb|CBA22621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           amylovora CFBP1430]
          Length = 452

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 210/469 (44%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + Q   G   G      +  ++ D+R  A    F A+KG  +D HDF+  A
Sbjct: 1   MISV-TLQQVAQLTGGTLHGD--DRAIADVTTDTRKAAEGSLFIALKGERFDAHDFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  G   ++V+  +      + +P   V D   AL +LA   R +S A I+A+TGS GKT
Sbjct: 58  ITAGCSALLVSKRL-----PVELPQVVVADTRIALGQLAAWVRQQSNARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G++NN IGVPLTL R+  +  + + ELG +H GEI + + 
Sbjct: 113 SVKEMTAAILRECGETLYTTGNFNNDIGVPLTLLRLKPEHRYAVIELGANHQGEIAYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 173 LVRPESALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQQALH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +       +  ++DF        ++ +   +      ++V+    G H   N L   
Sbjct: 233 AKTVWR--FSPEQADSDFYAANVTISAQGTHFTLHSPLGDVDVILPLPGRHNIANALAAS 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      + +     L+D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVGAPLSAVRQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   
Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGSLSHGISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467
           S    +      L +     L     +  +VK S S    +++ +L E+
Sbjct: 401 SGVGEHFADKAALGVRALELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|323340094|ref|ZP_08080359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323092471|gb|EFZ35078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 455

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 206/464 (44%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   S     Q  +  +S DSRS+     F  +     DGH+F+  A Q GA 
Sbjct: 5   LSEVARALGIESEDQYDQITITSVSFDSRSLEQGALFVPLI-ASNDGHEFVEAAKQNGAC 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D         IP+  VDD L AL K+      +    ++AITGS GKTTTK+M+
Sbjct: 64  AALWQKDH--ENRPQGIPLLIVDDTLEALQKIGKYYLQKINPKVVAITGSNGKTTTKDMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+         ++NNHIGVP+T+  M  + +  + E+GM H GE+  L HL+ P +
Sbjct: 122 AAVLSTQFNVAKTHDNFNNHIGVPMTVLSMEPNTEILVVEIGMDHFGELDHLVHLLDPDV 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   + IA AK EI   L++ G +  N D+     L  +        
Sbjct: 182 AVITMIGEAHIEFFKTRDRIADAKMEITHALKEDGLLVYNGDEP----LLIERAEKLDFE 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG   N D Q +     +E++      Q   +      IG +  +N L  L + S  
Sbjct: 238 TKTFGTGANVDLQAQNIVSDAEKTS-FRVKQWPELNFTIPMIGAYNVKNALAALCVGSEF 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D  + +KAL  F   +    R           ++ + YN+NP +    ++        
Sbjct: 297 QIDPRSMVKALEHF---DLTRNRTEWVKASNGADILSDVYNSNPTACAEVLTAFQN--AE 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
             GRR AVLGDM E+GE     H  LA+ +    +  V+L G  +  L +AL        
Sbjct: 352 TTGRRYAVLGDMLELGEQGPKMHAGLADKIDPKKVDEVFLCGPLMKNLAEALTDKFDQGK 411

Query: 424 VHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H+  T   + L   ++  L   D+V++K S+      ++  L 
Sbjct: 412 IHHYATGEKEQLVSDLKERLRSEDMVMLKGSHGIHLEDVLAELR 455


>gi|255101823|ref|ZP_05330800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-63q42]
 gi|255307690|ref|ZP_05351861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile ATCC 43255]
          Length = 457

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 137/464 (29%), Positives = 216/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K HA  +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEHAYKL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 244 ---KTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   + R       +     T+I++SYNA+P SM        +I 
Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420
              +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +        
Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|227894492|ref|ZP_04012297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227863651|gb|EEJ71072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 455

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 206/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+     G   Q  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKALNTTCEGDD-QTVITSVAFDSRKITNGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +            +I V  VDD L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPENIAVIEVDDPLSAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMVA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGTRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGRHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
            GRRIAVLGDM E+G+ S + H  L++ L    I+ V+L G  +  L DAL       H+
Sbjct: 353 GGRRIAVLGDMLELGKNSPALHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYKPEHL 412

Query: 425 HYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           HY   + MD +   +++ +   D+VV+K S+      ++  L 
Sbjct: 413 HYYTKDQMDRMIDDLKNDIKSDDIVVLKGSHGMYLENVLARLR 455


>gi|254292765|ref|YP_003058788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
 gi|254041296|gb|ACT58091.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Hirschia
           baltica ATCC 49814]
          Length = 478

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 170/472 (36%), Positives = 252/472 (53%), Gaps = 20/472 (4%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN  LWT  ++  A +G   G      V+GISIDSR +A  + F A+K    DGH+++  
Sbjct: 1   MNKSLWTSKEIAAATKGEMTG---DWKVSGISIDSREVAKGDLFVALKDLR-DGHEYVSS 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++KGA   ++++D         +P   VD+ L AL  L +AAR RSKA   AITGSVGK
Sbjct: 57  AIEKGAAGALISSDCG------DVPCVTVDNTLHALENLGLAARARSKAIHAAITGSVGK 110

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ KEM+     S  K +  + S+NNH GVPLTLARMP D    IFE+GM+  GEI   +
Sbjct: 111 TSVKEMIAQIFRSKGKAHWNVKSFNNHFGVPLTLARMPRDTKRAIFEIGMNTPGEIAPRS 170

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK- 238
            +VRP IA++T IA AHL     IE +A  K++IF GLE  G   L  +D FF+ +KA+ 
Sbjct: 171 RMVRPQIALVTKIAGAHLEGMGTIEAVADEKSDIFCGLEPNGVAILPREDDFFDYMKARV 230

Query: 239 -SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +   G    AD +L  ++     S     + G+++    + IG H   N +
Sbjct: 231 FDCQPTASLLSFGGAQSEADARLISFEPEGNGSQGTADILGETVSFQLNAIGDHWGMNAV 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + +  +       A   L  + P  GRG      +  G  TL+D+SYNANP SM+A +
Sbjct: 291 LAILVGRLSGMSAQEAADGLKGYTPPAGRGAAEILKMPFGEITLLDDSYNANPESMRAGL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L        GR+IA+LG+M E+G  +   H DL + +    +S ++L+G  +L L+D+
Sbjct: 351 AAL----GQRSGRKIAILGEMRELGPDADKLHADLKDPILKAGVSELFLAGDGLLPLRDS 406

Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + +   V ++ T   L L +  SL+ GDVV++K SN+ G   + N L  
Sbjct: 407 CSNNENEPGVCWASTSKELVLMVNKSLISGDVVLIKGSNASGIASVANALKA 458


>gi|153853962|ref|ZP_01995295.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
 gi|149753344|gb|EDM63275.1| hypothetical protein DORLON_01286 [Dorea longicatena DSM 13814]
          Length = 456

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 215/471 (45%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ +A +G   G        V+G+ IDSR + P   F AI G   + H FI 
Sbjct: 1   MKNL-SIENITKACRGTFHGDESILSQEVSGVVIDSRKVQPGYLFVAIDGERVNAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  VV + D    +G    P   V+    AL  +A   R      ++ ITGSVG
Sbjct: 60  DTVKAGAMCVVSHED----LGETDFPYILVESTGQALLDIAKLYRDSFDMKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   L+     +  +G++NN  G+P+T+  MP D +  + E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVLAQKYHVHKTLGNFNNEWGLPITIFDMPEDTEVAVLEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     L +K
Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDD----LLSK 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +   T   FG   N  F+    +      +   + L+  S       +      +  
Sbjct: 232 MSPVKGVTPVFFGMGDNCAFRADNIEPQGLRGTSCTITLKDGSSFDCLVPVPGIHMVSNA 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    V          IKA     P           +      ++D+ YNANP SMKA+I
Sbjct: 292 VAGAAVGYTLGLTADEIKAGIESLP---SIPGRNHIIETDHMIILDDCYNANPISMKASI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR++AVLG+M E+G+ +++ H ++    +  N+  V   G    +L + 
Sbjct: 349 DVLNMAI----GRKVAVLGNMGELGDTAEALHAEVGTYAAEQNVDLVCGIGDLTRSLVEE 404

Query: 418 LPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  +    +    +     I   + DGD V+VK+S+   F ++++ L E
Sbjct: 405 ASKGANTEALWFADNESFIQAIPDIIKDGDNVLVKASHGMNFPQIVHALEE 455


>gi|117619374|ref|YP_858327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560781|gb|ABK37729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 451

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 205/470 (43%), Gaps = 27/470 (5%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    +L Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLAELAQVLDARLIG--EDGAITAVSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  ++V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT
Sbjct: 59  AAGASALLVEREL-----PLAIPQLVVTDSLKGLGRLGRLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L       A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMATAILRQEGDVLATAGNFNNEVGVPLTLLRLEPQHRFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+   +A+   
Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLGEGGTAIVNADNEFWPKWQAR--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            GI   +S    +               +   +      + +     G H   N L    
Sbjct: 231 -GIHCAFSIEDQRQPFHARNVVINQQGCAEFVMVTPQGEISLTLAIPGRHNVANALAAAA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L A + +    L +  P +GR    R        TL+D++YNA+  S+ A I  L+
Sbjct: 290 GTLALGASLASVKAGLELMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S    G ++ V GDM E+GE S   H  +    S   +  V   G       DA    
Sbjct: 346 AMS----GYKVLVFGDMKELGEESAEQHARVGRHASERGLDAVLTVGEQSRHTADAAA-- 399

Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFP 469
               + +    LF  +   +       ++VK +       ++ ++ +   
Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEIAILVKGARGSRMEDIVEMVKDRQE 447


>gi|302386508|ref|YP_003822330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
 gi|302197136|gb|ADL04707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           saccharolyticum WM1]
          Length = 456

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 209/460 (45%), Gaps = 16/460 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L A  G  +    +  +  ISIDSR++   + F  + G   D H FI  A   GA 
Sbjct: 6   VKDILSATGGRLLCGSEEMILENISIDSRTMKGNDLFVPLIGDKVDAHRFIGQAFDNGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+ +          + P   V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  AVLTSR---HDAMDSARPWIQVEDTKKALQAIGSYYRDRLILPLVGITGSVGKTTTREMV 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+    Y   G++N+ +GVP+T++ +  + + G+ ELGMS  GE+  +  + +  +
Sbjct: 123 ACALSARYSVYKTPGNHNSQVGVPITISEIAPEDEIGVIELGMSEPGELTVIARIAKIQM 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+      + I   K  I +GL + G +FLN DD F +  KAK        
Sbjct: 183 AVITNIGVTHIEQLGTQDNIYREKLTIQDGLTEGGILFLNGDDQFLKSTKAKE----GCR 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              +G  +N D++                   K + V    +G H   N +++L + +  
Sbjct: 239 TIYYGTGENCDYRALNVHLEEGFPAFTAAFGQKQVPVRLAVMGSHNVLNAMVSLAVAAEC 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++ A K L  F       +  +     G  T+ID++YNA+P SMKA + VL  I+  
Sbjct: 299 GIPMEKAAKCLEAFTG----FRNRQQIYQTGGITVIDDTYNASPVSMKAGLEVLGSITKA 354

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
                IAVL DM E+G+ + S+H ++ E ++ + +  +   G     +  A+        
Sbjct: 355 KRR--IAVLADMKELGDNTLSYHYEIGEYIAEHPVDELVTLGELAGEIARAVKEHAPCIQ 412

Query: 427 SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            +       L  +++  L +GD V+ K SNS     +   
Sbjct: 413 VKEFMEQDPLVSYLKEELKEGDCVLFKGSNSMMLGPVAEK 452


>gi|161506848|ref|YP_001576802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260102328|ref|ZP_05752565.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|160347837|gb|ABX26511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083861|gb|EEW67981.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328463452|gb|EGF35103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 455

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 205/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ + +     G   +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +            +I V  VD+ L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPENITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDAGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  L++ L    I+ V+L G  +  L DAL     P ++
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLSDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D++V+K S+      ++  L 
Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455


>gi|153810103|ref|ZP_01962771.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
 gi|149834281|gb|EDM89361.1| hypothetical protein RUMOBE_00484 [Ruminococcus obeum ATCC 29174]
          Length = 456

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 210/472 (44%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L +   G   G        ++ I+ DSR I     F  I G   D H FI 
Sbjct: 1   MKNL-TLRNLTKVCNGIWHGDNALLDQEISAITTDSRKIEKDCLFVPIVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             + KGA   +   ++  +          VD  L A+  +A     + +  ++ ITGSVG
Sbjct: 60  DVMTKGALATLSERELPEA----DYAYIQVDASLQAVKDIAEFYLEQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  +    + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDQIAVLEMGISDFGEMARL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P   VIT I   HL N    + +  AK EIF+ ++  G I LN DD     ++  
Sbjct: 176 TKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQSMKPNGHIVLNGDDDKLITVRE- 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      FG +   D    + +    +     + L   + +V+    G HM  N L
Sbjct: 235 ---YNGVKPVFFGLNSERDVYADQIESKGLKGVACRIHLGEDAFDVLVPTPGIHMVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  I    ++   + +       GR K          F ++D+ YNANP SMKA++
Sbjct: 292 AAAAVGRIYGLTIEEIRRGIESLETIRGRFKMIE----TDKFLVVDDCYNANPMSMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL      GEGRR+A+LGDM E+GE   + H  +    ++  I      G   + + +A
Sbjct: 348 DVLHD----GEGRRVAILGDMGELGEDEAALHEGVGIHAAICGIDACVCVGDLAVHIAEA 403

Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++     V+Y +T + L   +   +  GD ++VK+S+   F  ++  L E
Sbjct: 404 ARKANPDFPVYYEKTRESLLEHLNDYVQKGDTILVKASHFMKFEEVVKALEE 455


>gi|307244137|ref|ZP_07526255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492508|gb|EFM64543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 469

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 219/473 (46%), Gaps = 17/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L    +++QA QG  +     G  +  I IDSR   P   F AI G   DGH F+  
Sbjct: 1   MISL-RVEEVVQATQGQLVCQGMDGGEITNIVIDSRLAGPGAMFVAIVGESTDGHIFLES 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A Q+G    +V+ +   +       +  VD+    L  +A   R       + ITGSVGK
Sbjct: 60  AHQEGCRFFLVSNESYITDRFKDSTLVKVDNTEIGLGLIAKYYRDMFDIPFVGITGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT++M+   L+S   T     +YNN  GVPLTL R+       + E+GMS  GEI +L 
Sbjct: 120 TTTRDMVYSVLASKFNTIKNEKNYNNQFGVPLTLFRLEPGHQCAVIEMGMSGFGEIEYLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++VRP I +IT I  +H+ +    E I  AK EI  G ++T ++ +N DDS+      + 
Sbjct: 180 NIVRPKIGIITNIGMSHIEHLGSQEGIFKAKMEITSGFDQTSSLIINGDDSYLRTELERY 239

Query: 240 HA--LGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                    +YSFG     D   +  +    +++      + ++ E     +G H  +N 
Sbjct: 240 RNSQKDSYKVYSFGMELQNDLCCKSQEVVDRDKTRFTCSFEDETYEFTIPCLGEHNVRNA 299

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  +    I    ++   K L  F   E R    +  +    FTLI++ YNA+P SM   
Sbjct: 300 MAAILAGHITGMTMEEISKGLLDFVATENR----QDIIKTDRFTLINDVYNASPDSM--- 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-K 415
           I+ L  +  + + RR+A+LGD  EMG+ ++  H  +    S+     +  +G     +  
Sbjct: 353 IAALKVLKLYKDRRRVAILGDCLEMGQYAEEGHRRVG-YQSIDKADIIITAGHAAKFIGV 411

Query: 416 DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +A+ R      V + ET + L   +   + DGDV+++K+S    F  ++ +L 
Sbjct: 412 EAMERGFDLSRVFHFETKEELIDSLPKIVEDGDVILLKASRGMKFEDIVEVLK 464


>gi|224541776|ref|ZP_03682315.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525303|gb|EEF94408.1| hypothetical protein CATMIT_00948 [Catenibacterium mitsuokai DSM
           15897]
          Length = 447

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 215/462 (46%), Gaps = 21/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A  G  +       VNG + D+R I P   +  + G   DGHD+I  A  KGA 
Sbjct: 3   IREIIEATNGKLLSGHLDDQVNGFTQDTRVIQPGNLYIPLVGIK-DGHDYIPQAFNKGAA 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + N  +     +    V  V+D + AL  LA   R+ S A +I ITGS GKT+TK+M+
Sbjct: 62  ATLTNRPIEDDSHN----VILVEDTMKALGDLARYVRVHSHAKVIGITGSAGKTSTKDMI 117

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              +S    T    G++NN+IG+PLT+ R     +  + E+GM+HL EI +LT +  P I
Sbjct: 118 ASVISQQYTTLKTQGNFNNNIGLPLTILR-YNGEEVMVIEMGMNHLEEIDYLTKIALPDI 176

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A IT I  AH+      E I  AK EI  G+     +  N +D    +           +
Sbjct: 177 AAITNIGTAHIGELGSRENILQAKMEIVHGMNHGTLVVNNDNDLLSTVHPE------GIS 230

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G   +AD +        + S   V++ G+   V  +  G H   N L+ + I  +L
Sbjct: 231 LKTIGIESDADLKATDIILNEDMSSFRVKVNGQDYAVRVYVPGVHFIFNALIAIQIGLLL 290

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  I+ +  F   + R              +ID +YNAN  SMK++I VLS  +  
Sbjct: 291 DIPMEKCIRGIETFELTKNRNDI---LTLDRHIRVIDGTYNANLDSMKSSIDVLSGYTDR 347

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-- 424
                IAVLGDM E+G+  ++ H  +   L   NI  +   G     + D + ++     
Sbjct: 348 K----IAVLGDMLELGDYEETLHRAVGAHLLKKNIDLILTVGPAARYISDEVNKAKPGIA 403

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ +    L  ++Q  L + DVV+VK+SN      +IN L E
Sbjct: 404 YHFDDNASLSAYLQECLEENDVVLVKASNGMHLKEVINDLKE 445


>gi|315633813|ref|ZP_07889102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477063|gb|EFU67806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 459

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 127/477 (26%), Positives = 203/477 (42%), Gaps = 29/477 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +   ++   IG      V  +S DSR       FFA+KG ++D HD+++ A
Sbjct: 1   MITL-SLSQIASILEAQLIG-DGNVTVENVSTDSRKAVNNGLFFALKGENFDAHDYVMKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++G    VV           +I    V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 59  AEQGCVAAVVEHPTEG-----NIAQLIVKDSRLALGQLAKWLREKINPKVVAMTGSSGKT 113

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM                   G++NN IGVPLTL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTASILQQCAVDFDDVLFTQGNFNNDIGVPLTLLRLTEKHKFAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +  AHL  F  ++ +A+AK EIF GL   G   +N   ++ +  +
Sbjct: 174 YTTALAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTHHGVAIINQAHNYQQKWQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +      +  Y    +  ADF     +   + +   +     ++++    +G H   N 
Sbjct: 234 KEI--GQHEVQYFSYDNPQADFYAEHIQFSEQGASFVLHTPQGNVQIDSPYLGEHNVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    K L      +GR              L+D++YNAN  SMK+A
Sbjct: 292 LAATALAMNVGATLAQVKKGLETPSLVKGRLF---PIHPCDNLLLLDDTYNANVGSMKSA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ISVL +        R+ V+GDM E+G+ +   H ++ E      +  V   G     +  
Sbjct: 349 ISVLQKYPA----FRVFVVGDMGELGDNTPLCHQEVGEFAWAAKLDLVISFGRSSSVISA 404

Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                    +      L  ++     Q       VV+VK S S     +I+LL   F
Sbjct: 405 V----NFGRHFTDKTELVAYLTPIIKQQLTQQKVVVLVKGSRSMKMEDVIDLLKGNF 457


>gi|187930161|ref|YP_001900648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
 gi|187727051|gb|ACD28216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12J]
          Length = 478

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 121/473 (25%), Positives = 192/473 (40%), Gaps = 16/473 (3%)

Query: 2   NPLWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +    D        H  G  P   +  ++ DSR++ P + F A+ G  +D HDF+   
Sbjct: 5   TVMMRATDAAAWMTGAHLAG--PDAAILRVTTDSRAVQPGDLFVALIGERFDAHDFLPEV 62

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKT
Sbjct: 63  VARGAAAVLVSRAPAATLDVTNVAVLTVADTRFGLGQLAAGWRRQFPIPVVAVTGSNGKT 122

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 123 TVKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAV 182

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A+I      H      +E +A   A +   L   G      D +       
Sbjct: 183 LAAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYAP 242

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A             +A          ++   +EVQ  G+   +    +G H A+N L
Sbjct: 243 VWKAAAGSRRV-LDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNAL 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                        +   +AL  F P +GR    +         +ID++YNANP SM+AAI
Sbjct: 302 AATACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  +       R  VLGDM E+G    +FH ++        I  V  +G       DA
Sbjct: 359 DALVTLPA----PRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                   +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 415 FGPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465


>gi|319791664|ref|YP_004153304.1| UDP-N-acetylmuramoylalanyL-D-glutamyL-2,
           6-diaminopimelate/D-alanyL-D-alanyl ligase [Variovorax
           paradoxus EPS]
 gi|315594127|gb|ADU35193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus EPS]
          Length = 479

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 136/468 (29%), Positives = 209/468 (44%), Gaps = 12/468 (2%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL  T     Q I G  +   P   +  +  D+R++A  + F A+KG  +D +DF+  
Sbjct: 4   MTPLNMTLAQAQQWIPGSRLVGDPATVIARVHTDTRTLADGDLFVALKGERFDANDFLAQ 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A +KGA   + +  + A+     +    V D L AL  L    R + +  +IA+TGS GK
Sbjct: 64  AKEKGAIAAIAHHGLEAA----GLAGLEVPDSLVALGALGAGWRAQFELPLIAVTGSNGK 119

Query: 120 TTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+          +  A  G++NN IGVPLTL R+       + ELGM+H GEI  
Sbjct: 120 TTVTQMIAAILVAFRADRALATAGNFNNEIGVPLTLLRLRARHQHAVLELGMNHPGEIAR 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ + RP IA++      H    + +E +A   A +F  L   GT    Y D+F  L   
Sbjct: 180 LSAISRPTIALVNNAQREHQEFMATVEAVAIENAAVFAVLPDDGTAVFPYGDTFTSLWTD 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +H  G +   +FG+ + AD  L   +       + V+    + +   H  G H A N L
Sbjct: 240 MAHDGGSRRCMTFGEDEGADISLESAEWKQGAWAVRVRTPLGNFDASLHIAGRHNAGNAL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356
                       +D   + LS F P +GR K       N+   TL+D+SYNANP S+ AA
Sbjct: 300 AATACALAAGVPIDRIAEGLSAFEPVKGRSKASEVVLSNKHVLTLVDDSYNANPDSVIAA 359

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+ +     G  + VLGDM E+G  +  FH ++        I  V+  G        
Sbjct: 360 IDVLAGLP----GPHLLVLGDMGEVGNRAPEFHAEVGAWAKRRGIEAVYTLGTETAHTIA 415

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   + +  +    + L   + + L     V+VK S      R++  +
Sbjct: 416 AFQDADNGRHFNDYEALHAAVLARLPLVGSVLVKGSRFMKMERVVQAI 463


>gi|126651495|ref|ZP_01723699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126591748|gb|EAZ85844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 455

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 203/462 (43%), Gaps = 17/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G   +GH F+  A +KGA
Sbjct: 4   TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEQTNGHRFVAQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D         IP+  VDD   AL ++A A R   KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKD--EPNPPEGIPLLFVDDPEVALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   L   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPDGLLFYDGDEPLLQELVAKEMHLNA- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG   N           +  S        +    +           +  TL  + I
Sbjct: 240 --VAFGLEPNNLLYADHIHANANGSSFTTHGMIEGDFFISV----LGKHQVKNTLVAMLI 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +  +          R +          I+++YNA P S+KAAI  ++  + 
Sbjct: 294 SHQLGLKNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATSTI 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
             E     VLGDM E+G   Q FH  LAE +    I +V L G  +  L + L     + 
Sbjct: 354 RPEKW--LVLGDMLELGPDEQRFHEGLAEEIDEQEIDYVCLFGPRMTHLYEVLKERFGAE 411

Query: 423 HVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            + Y+E     +   ++    +  +V++K S       ++  
Sbjct: 412 RLLYAEDDYTAIIEKLK-LANESSIVLLKGSRGMKLETILQA 452


>gi|238918674|ref|YP_002932188.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868242|gb|ACR67953.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella ictaluri 93-146]
          Length = 458

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 134/463 (28%), Positives = 203/463 (43%), Gaps = 21/463 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L  AI    IG    G V  ++ D+R + P   F A++G  +DGHDF   A
Sbjct: 1   MIA-TTLQTLADAIGATLIG--ADGPVTAVTTDTRKLTPGCLFVALQGESFDGHDFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS GKT
Sbjct: 58  LEGGAGALLVNRRLA-----LDVPQLLVADTRLALGQLGAWVRRQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G+ NN IGVPLTL R+    DF + ELG +H+GEI +   
Sbjct: 113 SVKEMSAAILGLCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +E  +    
Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLSGVARAKGEIFAGLPPQGTAIVNVDSNDWESWQHALT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S       DF     +  +  +   +        V+    G H   N L   
Sbjct: 233 EQRVWR-FSPQAGAGVDFYASAVRSDAAGTHFTLHTPVGQCNVLLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L+      GR    R         L+D+SYNAN  SM AA  VL
Sbjct: 292 ALTMSVGASLTQVQQGLAGLQAVPGRLFPIRL---GEQQLLLDDSYNANVGSMSAAAEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G  +++ H  + +      I  V   G     + +    
Sbjct: 349 GNMP----GYRVMVVGDMAELGTEAEACHRRVGQAARAAGIDKVLSVGGLSRLIGEV--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLI 461
           S    +    + L   ++  L +     ++VK S S    +++
Sbjct: 402 SGCGEHFMDKEALLERLRHLLCEHAAITILVKGSRSAAMEQVV 444


>gi|188584360|ref|YP_001927805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
 gi|179347858|gb|ACB83270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Methylobacterium populi BJ001]
          Length = 487

 Score =  260 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 190/475 (40%), Positives = 271/475 (57%), Gaps = 10/475 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MSDAPLWTPAALESATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A++KGAG  VV          +  PV  V     D VL A+ +L +AAR R+ A I+A+
Sbjct: 59  AALEKGAGAAVVAAARANEFEGVG-PVLAVPGEDEDPVLEAMRRLGLAARARTGAAIVAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEQTRFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A +HA     + +FG+   AD +  +     + S ++  + G  +       G H+A
Sbjct: 238 RLLAHAHASRAGRVITFGEHAAADVRANRILTRPDVSVVDASVMGVPLTYQLGTPGRHVA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   LIDESYNANPAS+
Sbjct: 298 MNSLGVLACIHALGADLARAALSLAALKPPVGRGERTALRVGDGEAFLIDESYNANPASI 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++ + I  V+  G  +  
Sbjct: 358 RAALATLAGIETGAKGRRIAVLGDMKELGAAGETHHRELADAVAGHGIDVVFAVGPLMAH 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +ALP ++    + + +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 418 LFEALPMAVRGTAAPSAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|227509296|ref|ZP_03939345.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191226|gb|EEI71293.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGAH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D    +  ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHTDRL-PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+     L  +   
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +  +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L  
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460


>gi|314935967|ref|ZP_07843317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|313655973|gb|EFS19715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 451

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 204/466 (43%), Gaps = 16/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   + + I         +  + G++IDSR +  +  F   KG + DGH F+  A
Sbjct: 1   MIEV-SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG             S+  P+  VDD L AL +LA A        +I +TGS GKT
Sbjct: 60  LKSGAGASFYEK-GQDISDSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ 
Sbjct: 119 TTKDMIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK    
Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVE 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    + S G +       +     ++     +  +      +          NM    
Sbjct: 236 NVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYELPIL------GIHNMKNAT 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++I                  +  G R    +     T+I+++YNA+P SMKAAI  L
Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GR+I VL D  E+GE SQ  H D+   L    I  +   G     +     +
Sbjct: 350 SHM----NGRKIIVLADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQ 405

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  V Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 406 FVEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|237747020|ref|ZP_04577500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
 gi|229378371|gb|EEO28462.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl
           [Oxalobacter formigenes HOxBLS]
          Length = 454

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 199/464 (42%), Gaps = 21/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + Q ++G  I         GIS DSR + P   F A+KG ++D H F+     K  
Sbjct: 4   TLSQIRQWVRGSRI--TADTLFEGISTDSRHVQPGNLFIALKGENFDAHQFLAELADKKV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V         +  +P   V D   A+ ++A   R R    ++ +TGS GKTT KEM
Sbjct: 62  AAVLVER----VPENYPLPAVIVPDTRLAMGQIAQNWRSRFGIPVVGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +     +          G++NN +GVPLT+ R+       + ELGM+H+GE+ +L  + +
Sbjct: 118 IASIFRTAWGENCLATSGNFNNDVGVPLTVFRLNEMHRAAVIELGMNHIGEMAYLASIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++      H      +E +A     +   L + G      DD++  L        G
Sbjct: 178 PTVGLVNNAQREHQEFMQSVEAVARENGTVIRMLPENGIAVFPADDAYSSLWA---GYAG 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG SK+AD     ++    ++ + + L G+ +E+     G H  +N +      
Sbjct: 235 GRQTMTFGFSKDAD-VSAAYRIEKGKTRLVMSLAGEQVEMSLSTSGRHNVRNAMAAAACC 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      + L  F P  GR              LID++YNANP S++AAI VL+ +
Sbjct: 294 LAAGIGKLEIAEGLEKFVPVRGR---LERKTAFNGALLIDDTYNANPDSVRAAIDVLADM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G    I VLGDM E+GE  + FH ++        I+H +  G       +A      
Sbjct: 351 PSDG----IFVLGDMGEVGEEGERFHAEVGAYARERRINHFFTFGEMARFASEAY--GKE 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   ++ +   +++ +     ++VK S      R++  L+ +
Sbjct: 405 ARHFMDLEEMNGVLKALVKPDMAILVKGSRFMRMERVVEQLMND 448


>gi|317046893|ref|YP_004114541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
 gi|316948510|gb|ADU67985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pantoea sp.
           At-9b]
          Length = 453

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 207/469 (44%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ + + L     G   G      V  +  D+R +     F A+ G  +D HDF+  A
Sbjct: 1   MIPI-SLNTLATVSGGKLYG--SDITVGDVVTDTRKVTAGCLFVALVGERFDAHDFVGDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+  +  ++  + +      D   A  +L    R ++KA ++A+TGS GKT
Sbjct: 58  IASGAQALLVSKHLPVAVPQVVV-----ADTRIAFGQLGAWVRQQAKARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN  GVP+TL R+  D D+ + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDFGVPMTLLRLTKDHDYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D +     + +  
Sbjct: 173 LTRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFAGLPAHGTAIINADSNDLANWQPQLV 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S       +F     +  ++ +   +      + +     G H   N L   
Sbjct: 233 GKTLWR-FSPQPQAEVEFGASDIQLRADATSFTLHTPRGDIAITLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+   P  GR    R A       LID+SYNAN  SM AA  VL
Sbjct: 292 ALALSVDAPLSAIQAGLTKLQPVPGRLFPVRLA---EHQLLIDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G+ +++ H  + E      I  V  +G     + D    
Sbjct: 349 GDMP----GYRVMVVGDMAELGDEAEACHRQVGEAAKAAGIDCVLSTGSLSQLISD---N 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S +  +      L   +++ L +     +++K S S    +++  L E+
Sbjct: 402 SGNGEHFANKAALIERLRTLLSEHQEITILIKGSRSAAMEQVVQSLQEK 450


>gi|190571247|ref|YP_001975605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|213018645|ref|ZP_03334453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|190357519|emb|CAQ54956.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|212995596|gb|EEB56236.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 458

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 156/467 (33%), Positives = 241/467 (51%), Gaps = 15/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G   G+    + + IS D+RSI   + F A+KG  +DGHDF+  A  KG
Sbjct: 4   WNANNIIDATGGRGEGVCNSVYSSNISTDTRSIKKGDLFIALKGKKFDGHDFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   VV+ D        + P+  V D L AL+ +A          A +I ITGSVGKTTT
Sbjct: 64  AVAAVVSEDKY-----RNFPLIIVQDTLKALHNMASYYIRNILVNAKVITITGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   L     ++   G+ NN+IG+P T+ + P D  + I E+GMS  GEI+ L+ + 
Sbjct: 119 KDMLNTVLLHYGVSHVNEGNLNNNIGLPFTILKAPEDCQYLILEIGMSRAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT I PAH+ NFS + +IA AK EI  G++  GT+ LN D+  ++ L +     
Sbjct: 179 NPDIAVITNIEPAHVENFSSLLDIAQAKLEILHGMKNNGTLVLNKDNEHYDYLLSN---- 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLMTLG 301
             + + SFGK+++A   L +  +      ++++L   + M       G H A + L+   
Sbjct: 235 ANRNVVSFGKNESATVCLLELIRDDNGLNLKIKLNSGQIMNCNLPVKGEHFAYSALVVTA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  D+     AL  F   EGRG  ++   N     LI++SYNANP SMKAAI  L 
Sbjct: 295 VLQSLELDLSKLPLALENFTVTEGRGNVHQAKYNGKLVHLINDSYNANPTSMKAAIRTLG 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             S   +   +A+LGDM  +G  S  FH +L + +   N++ V   G  +L L   LP +
Sbjct: 355 TYSNLRK---VALLGDMLGLGNESIVFHTELLDSIVEQNVNKVHTVGKFMLELNKLLPEN 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           I   + +  + L   + + +   DV++VK S+      ++     E+
Sbjct: 412 IKGMHFDDSNQLKSNLANIVQGNDVILVKGSHGMRMDLVVQEFTIEY 458


>gi|227512308|ref|ZP_03942357.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227084483|gb|EEI19795.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 460

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D    +  ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHTDRL-PVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+     L  +   
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +  +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSPQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L  
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460


>gi|240141487|ref|YP_002965967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
 gi|240011464|gb|ACS42690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacterium extorquens AM1]
          Length = 487

 Score =  260 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 189/475 (39%), Positives = 265/475 (55%), Gaps = 10/475 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MSDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A++KGAG  VV             PV  V     D VL A+ +L +AAR R+ A I+A+
Sbjct: 59  AALEKGAGAAVVAEARAKEFEGAG-PVLAVPGEGDDPVLDAMRRLGLAARARTGAAIVAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RM  D  FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMLEDTRFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A + A     + +FG+   AD    +     + S ++  + G  +       G H+A
Sbjct: 238 RLLAHAQASRAGRVITFGEHAAADVCAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS+
Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA+S L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  
Sbjct: 358 RAALSTLAGIDTGAKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +ALP  +    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 418 LFEALPMPVRGTAAPTAEGVTDAVLATLRSGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|320161735|ref|YP_004174960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
 gi|319995589|dbj|BAJ64360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerolinea thermophila UNI-1]
          Length = 477

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 131/486 (26%), Positives = 205/486 (42%), Gaps = 36/486 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L+A+ G  I +      +  +IDSR + P   F A+ G   DGH F+  A Q 
Sbjct: 1   MLTLTDVLEALTGKHIDMQKPLTFSEAAIDSRQVIPGSLFVALPGVRTDGHQFVGAAFQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIP--------------------VFGVDDVLGALNKLAVAAR 103
           GA L +V  D+     +L +                        V++ L AL +LA   R
Sbjct: 61  GAILALVEKDLPQDFPTLDLRAVSPETPLAFPASWIPGQPLCLRVNNTLEALQQLARYWR 120

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R    +I ITGSVGK+TTKE++   LS   +T    G+ NN IG+PLTL R+    +  
Sbjct: 121 RRLNIRVIGITGSVGKSTTKELIAEVLSQRYRTLKNPGNLNNEIGLPLTLLRLGKGHERA 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+G    GEI  L  + +P + VIT I   H       E IA  K+E+ + L   G  
Sbjct: 181 VLEMGFYVPGEIALLCDIAQPQVGVITNIGTVHAERAGSQEAIARGKSELVQALPVGGYA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN+DD +   +  K+ A  +    +      AD          E     +  + +S  V
Sbjct: 241 ILNHDDPWVRWMADKTQAQILYYGLTPEAHLWAD---EIETMGLEGIRFRLHYRRESFSV 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG+H  Q  L    +  +        I  L           R     +     ++D
Sbjct: 298 RVPLIGHHSVQTALRATAVGIVEGLTWGEIIHGLQR----SPTQLRLVAVRSSSGALILD 353

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNA+P S  A++ +L ++     GRRIAVLGDM E+G   QS H  +    +      
Sbjct: 354 DTYNASPESTLASLQILHEMK----GRRIAVLGDMLELGPYEQSGHEKVGVRAAEV-ADV 408

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +   G     +  A   +      + +          ++  L +GDVV++K S+     R
Sbjct: 409 LVAVGELSKIIARAAREAGMKPEKIFWVPDTSQAIEVLRPLLKEGDVVLIKGSHGLRMDR 468

Query: 460 LINLLL 465
           +++ L 
Sbjct: 469 IVSALE 474


>gi|205351463|ref|YP_002225264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205271244|emb|CAR36032.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami nopimelate--D-alan
           alanyl ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626490|gb|EGE32833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 452

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 215/469 (45%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSCPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRLVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G    A+  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQAISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           S    +      L   + + L +     ++VK S S     +++ L E+
Sbjct: 401 SGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEK 449


>gi|169829743|ref|YP_001699901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168994231|gb|ACA41771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 455

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 127/462 (27%), Positives = 203/462 (43%), Gaps = 17/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G H +GH ++  A +KGA
Sbjct: 4   TLKQLAAWLN-EDMSAYDDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHRYVTQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D         IP+  VDD   AL ++A A RL  KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKD--EPNPPDGIPLLFVDDPEIALQEMARAYRLEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT L +PH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTEVAVLEMGMSGFGEIEFLTKLAQPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   +   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAQAKFEIIQGMQPEGLLFYDGDEPLLQELVAKEQHINA- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG   +           +  S        +    +           +  TL  + I
Sbjct: 240 --VAFGLEPDNLLYADHIHANANGSSFTTHGMIEGDFFISV----LGKHQVKNTLIAMLI 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +  +          R +          I+++YNA P S+KAAI  ++  + 
Sbjct: 294 SNQLGLNNEQIRTSLEHVVLTDMRMQQVQGTNGALFINDAYNAAPTSVKAAIQFIATSTI 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV- 424
             E     VLGDM E+G   Q FH  LAE ++   I +V L G  +  L + L       
Sbjct: 354 RPEKW--LVLGDMLELGPDEQRFHEGLAEYINEQEIDYVCLFGARMTHLYEVLKEDFEAD 411

Query: 425 ---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +  +    +   +     +  +V++K S      +++  
Sbjct: 412 RLLYTEDDYTAIIEKL-ELANESSIVLLKGSRGMKLEKILQA 452


>gi|229029920|ref|ZP_04185989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
 gi|228731428|gb|EEL82341.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus AH1271]
          Length = 460

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 212/460 (46%), Gaps = 20/460 (4%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64
            + L + + G  +        + GI IDS+ I     F  I      DGHD++  A+  G
Sbjct: 12  LNKLEEVVDGEGLQESFHNIEIQGICIDSKKIKKGNLFVPII--RVKDGHDYVKEAMDNG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K+
Sbjct: 70  AVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKELNVNVIGITGSNGKTTVKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P
Sbjct: 128 IINTILSTTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSKIAQP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL      EEIA AK EI +GL+  G    N D+     L  K+  L  
Sbjct: 188 DVAIITMIGQSHLETLGSREEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNLSS 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG+    DF     +        ++       +V  HG       N+L  +  ++
Sbjct: 244 INCKAFGEKYTNDFFPTNVQLDEYGIHFKLNDSNIQYDVPLHGKH-----NILNAIVGIA 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I         K             R++    +  FT+I++++NA+P+SMKAAI     ++
Sbjct: 299 IGQYYNVPVEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETFQTLN 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            + +   I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   +   S
Sbjct: 359 AYKKK--IIVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKYDS 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             V    +   +   +   +   D+V++K S       ++
Sbjct: 417 GKVQSFNSKAKIAEEVLKVITKKDIVLLKGSRGIALEEIV 456


>gi|218289166|ref|ZP_03493402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240749|gb|EED07928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 455

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 135/467 (28%), Positives = 219/467 (46%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+  F + +  + G   I   P   + G++ID R + P  AF A  G   DGH F+  
Sbjct: 1   MTPMP-FANFVHVVGGIPVIHEAPNVTITGVAIDHRQVQPGHAFVAFVGQRVDGHQFVDE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA + VV  D+  ++G    P   V + L A+  LA   R + +  ++ ITGS GK
Sbjct: 60  AFRRGASVAVVTEDVKTALG----PCIRVQNALQAVQALARWERDQFEGPVVGITGSNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM+   LS+I        + NN +G+PLT+ +        + E+GM  LG+I  L 
Sbjct: 116 TTTKEMVAAVLSAIGPCVYTSANQNNELGLPLTILQRDASHRAMVLEMGMRGLGQIEELC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+I VIT I   H+      E IA AK E+   L K G   LN DD +   ++ ++
Sbjct: 176 TIARPNIGVITHIGYNHIELLGSQENIALAKTELIASLPKDGMAVLNGDDPWLRRMQHRT 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +    S G     D +        E    EV     +  +    +G H   N L  
Sbjct: 236 TARILWYGMSEG----CDIRATSVAWSQEGMSFEVDTPHGTATMRIRLLGQHNVMNALAA 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   ++   K       +    +     ++ G  T+ID++YNA+P+S+ A++ V
Sbjct: 292 IAVGQTLGLSLEDIEKG----LGRVEAQRGRLRLVDAGDVTVIDDAYNASPSSVAASLEV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I+    G R+AVLGDM E+GE++   H D+   ++   +  +   G     +  A  
Sbjct: 348 LERIA--RPGHRVAVLGDMLELGEMAVQAHRDVGRRVASAGVDRLLCVGELAAEMARAAE 405

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +    V +   ++ L   ++S L  GDVV+VK+S      R ++ +
Sbjct: 406 EAGVPEVRHFNGLEELLASVRSYLQPGDVVLVKASRGVQLDRAVDAI 452


>gi|223937425|ref|ZP_03629330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
 gi|223893976|gb|EEF60432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [bacterium
           Ellin514]
          Length = 458

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 210/467 (44%), Gaps = 12/467 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  +   +  ++ G      P+  V  +  DSR + P + FFA+ G  +DGH+FI   
Sbjct: 1   MEP-RSLTYVAASMLGELRAGSPETRVARVCSDSRQVQPGDLFFALAGERFDGHEFITEV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG   VV     +         V  VD+   AL +LA   R   +  IIA+ GS GKT
Sbjct: 60  ASKGVAAVVAERTRMTGKMPE-CGVIVVDNTRQALGRLAARYRQDFQLPIIAVGGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE+L   L     T     S+NN IGVP TL R+       + E+G +H GE+  L  
Sbjct: 119 STKELLAGVLKKRLNTLWSEASFNNDIGVPATLLRLEKANQAAVLEIGTNHPGELAPLVS 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT+I   HL  F  +  +A  +  + E L   G +FLN D  + + +  ++ 
Sbjct: 179 MIQPKFGIITSIGREHLEFFGDVAGVADEEGWLAELLPADGKLFLNGDSDWTKQIARRTR 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++    FG   +      K         ++   +  S +     +G H A N    L
Sbjct: 239 ATVVRVG--FGAGNDWRVTDAKMDLQGVVFQVDAPDKSLSGQYRTALLGRHQALNATFAL 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + + L    D   + LS     + R        N     +ID++YNAN  SM AA++ L
Sbjct: 297 AVGAELGLTRDHLEQGLSDCKSAKMRL----QLSNWNGICVIDDAYNANADSMLAALNTL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     GRR+AVLGDM E+G  S++ H ++   ++   ++ ++  G    A+  +   
Sbjct: 353 QEMP--CVGRRVAVLGDMAELGAHSEAAHEEVGRRVAELGLNRLFAVGKMAGAMAKSARD 410

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +        + +      +++ L  GDVV++K+S S    RL  +L 
Sbjct: 411 AGLAEASEFDDVPAAAAAVKNFLKAGDVVLLKASRSTRLERLFEMLK 457


>gi|86749113|ref|YP_485609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572141|gb|ABD06698.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 479

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 201/467 (43%), Positives = 268/467 (57%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   ++ A+   ++   P   V GISIDSR++AP +A+FAI+G  +DGHDF+  A++
Sbjct: 5   PLWTSDAIIAAMGA-AVQGTPARDVFGISIDSRTLAPGDAYFAIRGDVHDGHDFVEAALK 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV T           P+  VDDVL  L  L  AAR R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVETAQRGKFAP-DAPLLLVDDVLDGLRDLGRAARARLDAKVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  +T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +V
Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLTLARCPASVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  FSGIE IA AKAEIF GLE  G   LN D+  F+ L A +   
Sbjct: 183 RPHLAIITTVEPVHLEFFSGIEAIADAKAEIFSGLEPGGIAVLNRDNPMFKRLTASARKA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G++ I SFG    AD +LR     ++ S ++  + G  +    +  G H+A N L  L  
Sbjct: 243 GVERIVSFGVHAKADARLRDIALHADCSAVDASILGHDVTYKLNIPGRHIAMNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A  AL+   P  GRG R    L QG  TLIDESYNANPASM AA+ VL  
Sbjct: 303 ADLVGADLALAALALAQVEPAAGRGVRRTLELGQGAATLIDESYNANPASMAAALGVLGS 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
               G+GRRIAVLGDM E+G      H  LA  +    +  V+  G  +  L DAL    
Sbjct: 363 AEISGQGRRIAVLGDMLELGPAGPELHRGLAGTVQSNAVDLVFCCGPLMHNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 423 RGGYAETAAALESQVVAAVRSGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|116493290|ref|YP_805025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116103440|gb|ABJ68583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pediococcus pentosaceus ATCC 25745]
          Length = 460

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 203/468 (43%), Gaps = 20/468 (4%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+       +     V  +  DSR ++P   F  I G   DGHDFI  AV  GA
Sbjct: 5   LSEIARALGTDEYPELWNDISVTSVQFDSRKLSPGSLFVPIMGER-DGHDFISQAVTAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D         +P   V + L AL KLA     +    ++AITGS GKTTTK+M
Sbjct: 64  VATLWAEDHQE-RRPADLPSILVKNPLEALQKLAKYYLDKINPKVVAITGSNGKTTTKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L +         ++NN +GVP+T+  M  + +  + E+GM   G++ FL+ LV+P 
Sbjct: 123 TAAVLEAEYNVVKTKANFNNELGVPITILGMSSNTEVLVVEMGMDRPGQLHFLSELVQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  AH+  F   E IA AK EI +GL++ G    N D+     L  +       
Sbjct: 183 IAVITMIGEAHIEFFKTRERIADAKMEITDGLKEDGCFVFNGDEP----LLEQRAKDLNV 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y FG   + D      +     +      +    E     I      N+   L  +++
Sbjct: 239 EQYRFGLKADNDVSASDIQ----GTDTSTMFKTNLDEETTVTIPVLGDYNVTNALAAIAV 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    K        +    R      +    ++ + YN+NP + +A +   + +  
Sbjct: 295 GHKYHIDLKKEAEALVDFDLTKNRTEWLTGKKGERILSDVYNSNPTAARAVLDSFANV-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----- 420
           + EGRR+ VLGDM E+GE +   H  LAE L+    + V+L G H+ AL+  L       
Sbjct: 353 NTEGRRLVVLGDMLELGENADQMHASLAEKLNAKRFAQVYLIGPHMKALEKRLIDEDIYS 412

Query: 421 SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              VHY ET  +  L   + + +   D +++K+S+      +++ +  
Sbjct: 413 KDAVHYYETGELKRLTDDLSTEIQANDSILLKASHGIHLENVVDKIKN 460


>gi|187935120|ref|YP_001886633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723273|gb|ACD24494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 453

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 213/464 (45%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ G
Sbjct: 3   LTLNEVLKAIDGELLIKNNEGNFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +++  +      +    V  V+D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 63  ATVAIIDEVNFKLEELNGKGTVIKVNDSKTALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  L ++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFNEIHRLANIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  +K  T+ +NY++     +  K +   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKKNNTLVVNYEND----MLQKVNESN 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I
Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +  +    +  FT+I++ YNA+P SM    S LS 
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +   R+IAVLGDM E+GE ++S H  + +         V  +G      K       
Sbjct: 352 LKTYSGSRKIAVLGDMGELGEHAKSSHEMVGQDAI-GKADIVLTTGEFREDYKSGF--GK 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   + L  ++ + + DGDV++VK+S S  F  ++  +  
Sbjct: 409 DTVTFNCKEELKNYLCNLIKDGDVILVKASRSAKFEDIVKNIEA 452


>gi|256852005|ref|ZP_05557392.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260661426|ref|ZP_05862339.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|282931886|ref|ZP_06337365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297205123|ref|ZP_06922519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615417|gb|EEU20607.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 27-2-CHN]
 gi|260547881|gb|EEX23858.1| d-Ala-d-Ala adding enzyme [Lactobacillus jensenii 115-3-CHN]
 gi|281303997|gb|EFA96120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii 208-1]
 gi|297149701|gb|EFH29998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 455

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 215/464 (46%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +I       ++ ++ DSR I     F  +KG   DGHDFI  A+  GA 
Sbjct: 5   LAEIAKALD-TTIEGNSDPVISSVAFDSRKINENALFVPLKGER-DGHDFINSAIANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +            + PV  VDD L A+ +LA     +    ++ ITGS GKTTTK+M+
Sbjct: 63  ATLWEKGH--PNKPDNFPVVEVDDTLAAMQELAKYYLNKVNPAVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV+P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPMTILEMKPTTEILVLEMGMDRAGQLHHLSSLVKPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+        K        
Sbjct: 181 CVITMIGEAHIEFFGSRDKIADAKMEITDFLKEDGEFIYNGDEPLLRQRAEKISQAKS-- 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +        ++K     +           +     IG H   N +  + +    
Sbjct: 239 --TFGFNDQDTIYALEFKSYMHHASFVTS--SSEQKFSIPMIGKHNVSNAMAAICVGHHF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D    +LS F P   R +  +  + +    ++D+ YN+NP + KA ++   Q+   
Sbjct: 295 GETDDEIAASLSNFTPTANRMQWRKGDVGED---IMDDIYNSNPTAAKAVLTSFGQVEVP 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S + H  LAE L    I+ V+L G  +  L++A+       S
Sbjct: 352 EGGRRIAVLGDMLELGSASAALHASLAEKLDPLVINEVYLYGPEMKNLEEAIKDKYAPAS 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + M+ +   +++ +   D+V++K+S+     +++  LL
Sbjct: 412 LHYYPQDKMERMIDDLKNDIHSNDIVMLKASHGMHLDKVLERLL 455


>gi|302036128|ref|YP_003796450.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
 gi|300604192|emb|CBK40524.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Candidatus Nitrospira defluvii]
          Length = 487

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 205/472 (43%), Gaps = 18/472 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            L+T  ++ + +             +  +  +  DSRS+   + F A +G  +D H F+ 
Sbjct: 11  ALFTVEEICEVLSVRPPAGVTPQDLKQRIRRVVTDSRSVRKGDLFIAFQGERFDAHTFVP 70

Query: 59  HAVQKGAGLVVVNTDM--VASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITG 115
            A+ +GA   +V  D     +     +PV   V D L A  +LA   R R    +IAITG
Sbjct: 71  KALAQGAVCAIVQEDYRLPPAPKRTGVPVLLGVRDTLEAYQRLATHYRNRFPIPVIAITG 130

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTKEM+   ++   KT    G+ NN IGVP TL ++       + E+G+   G+ 
Sbjct: 131 SNGKTTTKEMVAQVVAQRWKTLKTEGNLNNRIGVPQTLFQLAPRHQAAVIEMGVDQQGQT 190

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  + RP I VIT I P HL  F  +E  A AKAE+ + L + G + LN DD +F+ L
Sbjct: 191 TRLCEIARPTIGVITNIGPDHLEFFGSMEGSAQAKAELLDHLPQDGAVVLNADDEYFDYL 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A++       + +FG S  A  +    +   +   +   +           I      N
Sbjct: 251 AARAQ----CRVVAFGISPKAAIRAANIRVDEKGGTLFGLVVPGKSRQTEIRIRAQGQHN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +   L     +   +  +  A++    K                 +I++ YNANPASMKA
Sbjct: 307 VSNALAAA-AVGYVLGLSGTAIAEGLAKFRPAAMRSQISLSHGVQVINDCYNANPASMKA 365

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+ +L+++      R IA LGDM E+G  S+  H ++   L+   I H+   G     L 
Sbjct: 366 AVQLLAEL--GRGKRSIAALGDMLELGTDSKRMHREVGAFLAAQGIGHLLACGVLGRELA 423

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   ++      +            +   +  GDVV+VK+S      +++  
Sbjct: 424 EGARQAGMASDRITELPDAPAAAAALARMVRQGDVVLVKASRGMRMEQVVEA 475


>gi|259907413|ref|YP_002647769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963035|emb|CAX54518.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae Ep1/96]
 gi|283477246|emb|CAY73157.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Erwinia
           pyrifoliae DSM 12163]
          Length = 452

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 203/469 (43%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + Q   G   G      +  ++ D+R       F A+KG  +D HDF+L A
Sbjct: 1   MISV-TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  G   ++V+  +      + +    V D   AL +LA   R +S A I+A+TGS GKT
Sbjct: 58  INAGCSGLLVSKRL-----PVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N + + +   +   H
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESNDWPHWQQALH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G           ++DF        ++ +   +      ++V     G H   N L   
Sbjct: 233 --GKTVWRFSPGQADSDFYASDVIISAQGTHFTLHSPQGDVDVTLPLPGRHNIANALAAS 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      + +     L+D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   
Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467
           S    +      L       L     +  +VK S S    +++ +L E+
Sbjct: 401 SGVGEHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|116511201|ref|YP_808417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|116106855|gb|ABJ71995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 440

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 191/461 (41%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +     ++  +          VDD L A   LA     ++K  +IA+TGS GKTTTK
Sbjct: 62  GAIISFSEKEVEQA-------HLLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +
Sbjct: 115 DMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQ 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  AHL      E IA  K  I  G        +   D        ++    
Sbjct: 175 PELALITLIGEAHLEFMGSRENIAKGKMGITAG---LHGELIAPADPIINAFIPENQK-- 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                   +       L   K    +  +  +       +     G + A N ++   + 
Sbjct: 230 ------ISRFGLPGEDLFITKLIEHKERLTFETNFLDESITIPVPGKYNATNAMLAAYVG 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                       AL      E    R     ++    L+ + YNANP +M+  +     I
Sbjct: 284 LHYGLTEAEIKNALKE---VELTRNRTEWNKSKNGADLLSDVYNANPTAMRLILETFQAI 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L D +     
Sbjct: 341 PKNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKP 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           V Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 400 VSYFTDLDLLTESLSADLKPADQVLFKGSNSMKLSEVVEKL 440


>gi|126700269|ref|YP_001089166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile 630]
 gi|115251706|emb|CAJ69541.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Clostridium
           difficile]
          Length = 457

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 216/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIDVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEH---V 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 241 YKLKTFGFNKNNDVYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   + R       +     T+I++SYNA+P SM        +I 
Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420
              +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +        
Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|239637376|ref|ZP_04678358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
 gi|239596976|gb|EEQ79491.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus warneri L37603]
          Length = 453

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 128/462 (27%), Positives = 203/462 (43%), Gaps = 14/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            + G++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKAWIDCEIDEQYFHQSIQGVTIDSRAIKKDMLFIPFKGENVDGHRFVEQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D+      +  P+  VDD L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFYQKDVSLP-KDIEGPIIWVDDTLQALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++        G+YNN IG+PLT+  +  + D  I E+GMS   EI  L+ +  P 
Sbjct: 124 IECVLNTEFNVKKTQGNYNNEIGMPLTILDLDKNTDISILEMGMSGFHEIELLSTIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+   +    +   +   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAQAKSEITIGLKSNGTFIYDGDEPLLKPHVEQ---IKEA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G  +          Q   ++           E     +G H  +N  + + +   
Sbjct: 241 KCISIGLEQGNSLVCSVNDQV--ETEGIAFTINHQQEYELPILGIHNMKNAAIAIAVGQE 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     T    +      +  G R      +   T+I+++YNA+P SMKAAI  LS +  
Sbjct: 299 LGLSYKTIQHNIKR---VKLTGMRMERHETEQQVTVINDAYNASPTSMKAAIDTLSNM-- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHV 424
              GR+I VLGD+ E+G+ SQ  H ++   L   +I  +   G     + +         
Sbjct: 354 --NGRKIIVLGDVLELGDNSQRMHEEVGTYLQNKHIDQLITFGSEATFIHNTGKSYVDEA 411

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           H+    + L  ++   +   D V++K S       +++ L++
Sbjct: 412 HHFNDKEKLISYMTHIVQPDDNVLIKGSRGMKLEEVVDALIK 453


>gi|260584700|ref|ZP_05852446.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
 gi|260157723|gb|EEW92793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Granulicatella elegans ATCC 700633]
          Length = 462

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 227/466 (48%), Gaps = 14/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +++A++        +   +  +S D+R ++    F  +KG   DGHD+I  A+ +G
Sbjct: 5   TVAQIVKAVKAIDYQTDYRFDMIESVSFDTRKLSQNSLFIPLKG-QTDGHDYIQQAIDQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V              I    VDD L A  +LA     + +  +I ITGS GKTTTK+
Sbjct: 64  AKAVFWGRQ--DQTPPEGICAIWVDDPLEAFQELAKWYLEKIQPNVIGITGSSGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+S  + Y   G++NN IG+P T+  MP D +  + E+GMS  GEI FL+ L +P
Sbjct: 122 MTAAVLASRYRVYKTQGNFNNDIGLPQTILDMPEDTEQLVLEMGMSDFGEIEFLSKLAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A IT I  +H+ N      IA AK EI +GL + G+I    ++   E    +  A   
Sbjct: 182 SVAAITLIGESHMENLGSRAGIAKAKLEILKGLREKGSIIFPANEPLLEQQLEEMQAEEH 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  FG+  ++  Q    +   + + +   ++     V    +G +   N L  L +  
Sbjct: 242 FKVLPFGEGSSSVIQAENIQLFEDHT-IFDLVKPSKQSVQLPVLGAYNVNNALAALQVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++ AI+A+  F   + R    +         +++++YNA+P +MK+ I   + ++
Sbjct: 301 ECGVPLEQAIEAIQQFELTKNR---TQWVDGIHGSKILNDAYNASPIAMKSVIQSFTSVA 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +GR+I VLGD+ E+GE S++ H  ++EV+   +I  V+L G  + AL +AL     +
Sbjct: 358 --TKGRKIVVLGDIRELGEQSKALHASISEVMFPEDIQEVYLYGEEMSALFEALKTRFEA 415

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H+HY E     L   ++  L   D V+VKSSN  G   ++  L E
Sbjct: 416 SHLHYVENDKQALIRLLEEELRQNDQVLVKSSNGTGLLSVVEALKE 461


>gi|254976248|ref|ZP_05272720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-66c26]
 gi|255315383|ref|ZP_05356966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-76w55]
 gi|255518048|ref|ZP_05385724.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-97b34]
 gi|255651164|ref|ZP_05398066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Clostridium difficile QCD-37x79]
 gi|260684230|ref|YP_003215515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260687889|ref|YP_003219023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
 gi|306521012|ref|ZP_07407359.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile QCD-32g58]
 gi|260210393|emb|CBA64786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile CD196]
 gi|260213906|emb|CBE05948.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Clostridium difficile R20291]
          Length = 457

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 217/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR  + Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREASAQNAFVAIVGENLDGHTFMKPAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGDISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLNKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++T T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDETNTLIVNGDDKFLSTLKEKEH---V 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 241 YKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   + R       +     T+I++SYNA+P SM        +I 
Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420
              +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +        
Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|78484909|ref|YP_390834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thiomicrospira crunogena XCL-2]
 gi|78363195|gb|ABB41160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 474

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 20/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M   W   DL++A+ G   G            +S D+R++     + AIKG H+DGH FI
Sbjct: 1   MT--WNLADLVEAVNGVLAGELLGDEPVVFTSVSTDTRTLKSGALYIAIKGEHFDGHAFI 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGS 116
             AV++GA  V+++  M        +P   VDD   A  + A   R +     ++ +TGS
Sbjct: 59  GEAVRQGAVAVLISEPM-----ETVVPAVLVDDTRIAFGQFAAWHRQQMSLKGLVGVTGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTK +L   LS   +  +  G+ NN  G+P TL  +    D+ + E+G +H+ EI 
Sbjct: 114 NGKTTTKALLAHILSKQAQVLSTQGNLNNDYGLPRTLLELSTSDDYAVIEMGANHVKEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +LT + +P +AVIT  A AHL  F  +E +   K EI +G+ + G   LN D   FE   
Sbjct: 174 YLTQIAKPDVAVITLAAGAHLEGFGSLEGVIETKGEILDGVCEGGKAVLNTDSPGFEYWI 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            KS  LG+    +FG+++ A+ Q+  + Q   Q    + L  +++          +  + 
Sbjct: 234 EKSQQLGLSV-ITFGQARFANVQVTDFTQAENQITFTLDLNWQNIRQAEVVTMPVLGFHN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            M     +     +  +   +                       LID+SYNANP+S+KAA
Sbjct: 293 AMNAAAATAACLALGLSWSEIYPGLGDFDGVAGRLQQSKLPQGLLIDDSYNANPSSVKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L Q+     G     LG M E+G  S++ H D+A       ++H+ L G     +  
Sbjct: 353 IDALVQLP----GPSAVCLGGMAELGAESEALHQDVAAFAKAKGVTHLLLFGEATQCMPT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFPA 470
                    + E+ + L       +    +  V+VK S S    ++   +L    A
Sbjct: 409 VFGEG--AKWFESHEALAQEAVDLIQQDKIQNVLVKGSRSAKMEQVSQKVLARLEA 462


>gi|222151983|ref|YP_002561143.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
 gi|222121112|dbj|BAH18447.1| UDP-N-acetylmuramyl pentapeptide synthase [Macrococcus caseolyticus
           JCSC5402]
          Length = 447

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 128/460 (27%), Positives = 202/460 (43%), Gaps = 19/460 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + + + +   G    +  +  ++G+SIDSR+I     F   KG H DGH ++  A+ KGA
Sbjct: 7   SLNWIKKHTTGTLDAMYEEVMISGVSIDSRNIHEGVLFIPFKGEHVDGHKYVADAIDKGA 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D  A      +PV  V+D L AL +L+ A        +IA+TGS GKTTTK+M
Sbjct: 67  YAALWQRD--AGEVPRDLPVIVVEDTLTALQQLSKAYLKEVDPKVIAVTGSNGKTTTKDM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   K     G+YNN IG+PLTL ++  D +  I E+GMS  GEI  L+H+  PH
Sbjct: 125 IEAVLSPHFKVKKTQGNYNNEIGLPLTLCQLDEDTEISILEMGMSGFGEISLLSHIAEPH 184

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA IT I  +H+ +    E IA AK EI +G      +         E L          
Sbjct: 185 IAAITNIGESHMRDLGSREGIAKAKYEITDG------LTGPLFYDGDEALLKPLVKDN-- 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 K  +        +    +  M+ +     +    + +    + N       ++I
Sbjct: 237 ------KDAHRIGFNEDNEYYIHEMIMQDKHLQFKVNDDTYIVPTLGSHNARNATIAIAI 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            +    +  +        +  G R      +    LI+++YNA+P SMKAAI  +SQ+  
Sbjct: 291 GSYLGLSPEQINHSLQQLKLTGMRMEQLEGKDGALLINDAYNASPTSMKAAIDTVSQMDS 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +   I V GD+ E+GE    +H  +   L    I +V+ +G     +  A      V 
Sbjct: 351 EVK---IIVFGDVLELGEDEVMYHEQVGAYLQGKQIDYVFTTGNAARHISKAAEPFTTVQ 407

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + +T + L   ++  L     V+ K+S       +IN LL
Sbjct: 408 HFDTKEALTNHLKGMLNAHTSVLFKASRGMKLETIINELL 447


>gi|292669647|ref|ZP_06603073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
 gi|292648444|gb|EFF66416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas noxia ATCC 43541]
          Length = 469

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 213/472 (45%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T+ ++  A+   +             I+ D+R I+  + F A++G  +DG DF  
Sbjct: 1   MTGM-TWDEVQAAVGAAAHNGKLAGNTVFPHITTDTRKISSGDLFVALRGEKFDGADFAA 59

Query: 59  HAVQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            A+++GA  V+V    +T    ++      V   DD L A   +A A R++    +IAIT
Sbjct: 60  EALERGAAAVIVGTPLSTSAEKALKKAKGTVLKADDGLRAYQAIAHAWRMKFDIPVIAIT 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKE+    LS   K      +YNN +G+PLTL  +  +    + E+GM  LG+
Sbjct: 120 GSNGKTTTKELTAAVLSGRGKVCRTAENYNNEVGLPLTLLGIVPEDFAAVVEIGMRGLGQ 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  +  P I ++T +   H+     IE IA AKAE+ E +   GT+ LN DDS    
Sbjct: 180 IAALAPVAAPTIGIVTNVCEVHMELLGSIENIAKAKAELVEAIPSGGTVILNADDSRVAA 239

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +++   A     I ++    +AD +    +  ++ S   V    +  E      G H   
Sbjct: 240 MRS--FAADGVRILTYAIDADADVRAEALQCAADGSRFMVTYANERHEYAVSLPGRHNVS 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L     L          L      + R        + G +  I+++YNA+P+SM 
Sbjct: 298 NTLAALAAGFALGLTPQEMQAGLRNIEGTKMRY----ETESVGAWMFINDAYNASPSSMH 353

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+   + + P   GR+IAVLGDM E+G  ++  H  +    +    + V   G     +
Sbjct: 354 AALETTAALYP---GRKIAVLGDMLELGAAAEEAHRMIGRRAAELGFAAVVTYGPQARWI 410

Query: 415 KDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +A   +      ++ET +     ++  L DGD V+ K S      ++I LL
Sbjct: 411 HEAAEETGCAACFHAETHEEAAQLLRKILSDGDTVLFKGSRGMRMEQVIALL 462


>gi|119383339|ref|YP_914395.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Paracoccus
           denitrificans PD1222]
 gi|119373106|gb|ABL68699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paracoccus denitrificans PD1222]
          Length = 461

 Score =  259 bits (662), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 166/465 (35%), Positives = 246/465 (52%), Gaps = 17/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D  +A  G +        V G+SID+R+I P + F A++    DGHDF+  A
Sbjct: 1   MT-LWTSQDAAEATGGRATR---DFAVGGVSIDTRTIRPGDLFVALQAAR-DGHDFVARA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+   +    +   P+  V DVL AL  L  A R R +  ++AITGSVGKT
Sbjct: 56  LEKGACAALVSR--IPEGVAPDAPLLVVPDVLPALEALGRAGRARMRGKVVAITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEM  +AL+   + +A   SYNNH GVPLTLARMP D DF I E+GM+H GEI  L  
Sbjct: 114 STKEMARVALAGQGRVHAAEASYNNHWGVPLTLARMPEDTDFAIVEIGMNHPGEIEPLAR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A++TT+A AHL  F  IE IA  K  IF GL + GT  +  D    +LL+    
Sbjct: 174 LARPHVAMVTTVAAAHLEAFGAIEGIAREKGAIFRGLIQPGTAIIPEDLPVTQLLRD--- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G  +    +  K +     + +  ++ G++++ +    G H   N +  L
Sbjct: 231 CADDAAAIVIGFGQQGMARPLKAETLDGVTRVRARVLGETVDFMLASAGTHFVMNAVGML 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +S   ADV  A K LS + P  GRG       +     LID++YN+NP S+ A ++ L
Sbjct: 291 AALSAAGADVAEAAKHLSDWRPPLGRGA----VEDLDGIRLIDDAYNSNPTSLSAGLATL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     GRR+A+LGDM E+G    + H  +A   ++  +  V  +G  + AL +ALP+
Sbjct: 347 ARL---TGGRRVAILGDMLELGPDEIALHAGMAGDPAMEAVDLVHTAGPRMRALHEALPQ 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                ++ET   L   +   +  GD+V+VK S S     +++ L 
Sbjct: 404 GRRGMHAETAAELAGKVGELVASGDIVLVKGSKSSKVSTVVDALR 448


>gi|307294500|ref|ZP_07574342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878974|gb|EFN10192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 458

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 175/470 (37%), Positives = 238/470 (50%), Gaps = 17/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++ QA  G          V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MTALWTSEEIAQATGG---VASAPFAVSGVAFDSREVTDGDLFVAMKGEATDGHRFVDKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+  +         P   V D   AL  LA A+R R +  ++ +TGSVGKT
Sbjct: 58  FGQGAAGAIVSEAIAQ-------PHVLVPDSAAALEALARASRARMQGKVVGVTGSVGKT 110

Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L  AL  I     +  + SYNNH+GVPL+L+RMP +  +G+FE+GM+H GE+  L
Sbjct: 111 GTKEALFHALDRICPGEVHRSVKSYNNHVGVPLSLSRMPRESAYGVFEMGMNHAGELAAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  VRPH+A++T IAPAH+  F   E+IA AKAEIFEGLE  GT  + YD      L AK
Sbjct: 171 TRQVRPHVAIVTAIAPAHIEFFGTEEKIAEAKAEIFEGLEPGGTAVIPYDSPHVATLYAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       I +FG    AD   R+    +   + +   L G  +       G H   N L
Sbjct: 231 AEKHAA-RILTFGFDSGADVHAREMVLAAGGGTLVTAALPGVELCFTVGAPGEHWVSNAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM    
Sbjct: 290 AVLAAVEAVGGDLAAAGLALAEMPGLPGRGERRIVPVAGGEALLIDESYNANPLSM---A 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L Q+     GRRIAVLG M E+G+ S+  H  L E L   ++ +  L G  +  L +A
Sbjct: 347 ATLKQLGREQAGRRIAVLGGMRELGDRSRDLHAGLVEPLKGSHVDYAILVGDEMQPLAEA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L   I   +          IQ  +  GD ++VK SN  G  RL+  L E+
Sbjct: 407 LGGVIAFDHVPDAAKATDLIQGEMRAGDAILVKGSNGIGLSRLVAALQEK 456


>gi|323465796|gb|ADX69483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus helveticus H10]
          Length = 455

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 204/463 (44%), Gaps = 18/463 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ + +     G   +  +  ++ DSR I     F  ++G   DGHDF+  A+  GA  
Sbjct: 6   AEIAKDLNTTCEGDD-KTVITSVAFDSRKITTGGLFVPLEGER-DGHDFVAGAISNGASA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
            +            +I V  VD+ L A+  LA     +   T++ ITGS GKTTTK+M+ 
Sbjct: 64  TLW--KKGHPNKPKNITVIEVDNPLTAMQDLARYYLRKVNPTVVGITGSNGKTTTKDMIA 121

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS     +    ++NN IGVP+T+  M  + +  + E+GM   G++  L+ L  P +A
Sbjct: 122 AVLSKRFNVHKTQANFNNEIGVPMTILEMKPNTEILVLEMGMDRPGQLHHLSELTHPDVA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           VIT I  AH+  F   ++IA AK EI + L + G    N D+   +    K         
Sbjct: 182 VITMIGEAHIEFFGSRDKIADAKMEITDFLREDGEFIYNGDEPLLQERAKKLDQAKA--- 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG           +K     +     +     +     IG H   N +  + +     
Sbjct: 239 -TFGFRDEDTVHATGFKSYMHHAT--FTINDSEQKFSIPMIGKHNVSNAMAAISVGHHFG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +    +LS F P   R              ++ + YN+NP +++A ++   Q+    
Sbjct: 296 ESDEEIASSLSNFKPTANR---MEWEKGDVGEAIMSDVYNSNPTAVRAVVTSFGQVEVKD 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSI 422
            GRRIAVLGDM E+G+ S   H  L + L    I+ V+L G  +  L DAL     P ++
Sbjct: 353 GGRRIAVLGDMLELGKKSPELHAGLCDTLDPQIINEVYLYGSEMKNLYDALQDKYEPENL 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H +  + MD +   +++ +   D++V+K S+      ++  L 
Sbjct: 413 HYYTQDQMDHMINDLKNDIKPDDIIVLKGSHGMHLENVLARLR 455


>gi|114564958|ref|YP_752472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336251|gb|ABI73633.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 462

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 213/471 (45%), Gaps = 18/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L Q + G   G    G +  +S DSR+I  Q  F A+KG  +DGHDF+  A
Sbjct: 1   MISV-TMSVLAQHLNGTLHGQ--DGVITSVSTDSRNIPAQCLFIALKGERFDGHDFVDTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V+  +V    +  I    V D   A+ K+    R       +A+TGS GKT
Sbjct: 58  IKNGAVALLVDHLLVDHPFAADIAQIVVVDTQKAMGKMGAFVRQTVAPICVALTGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEML   LS   +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 118 SVKEMLATILSQHHQVLFTAGNFNNEIGVPLTLLRLSEGDEYGVFELGANHRGEIDYTSS 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +A++  +  AHL  F  +E +A AK+EIF  L   GT  +N DD F + +  +S 
Sbjct: 178 LVLPQVALVNNVGNAHLEGFGSLEGVAQAKSEIFNHLTPDGTAIINADDKFADFMLQQSQ 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                                     +      +   G+   V     G H   N L   
Sbjct: 238 GRKHLRFSREMNVDADVTATDIVADANGCYRFTLTFDGQQEVVQLPLAGLHQVSNALAAA 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   +    +  ++  P +GR + +    + G   LID+SYNANP S+ AAI+ L
Sbjct: 298 SMCIALDISLYDIAQGFALLKPVKGRMQPH----DLGRVLLIDDSYNANPTSVSAAINWL 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  +G R  VLGD+ E+G+ +   H  +   +    I  ++  G       +A   
Sbjct: 354 Q----QRDGYRCLVLGDLGELGDNAAPLHASIGLQVKNAAIESLFCCGQLSANTSEAFGS 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468
                +    + L + +Q  L        V+VK S S    R+++ LL+ +
Sbjct: 410 ----EHFCAQEPLIVALQKQLASTTGNITVLVKGSRSAAMERVVDSLLDAY 456


>gi|239931805|ref|ZP_04688758.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440174|ref|ZP_06579564.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
 gi|291343069|gb|EFE70025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces ghanaensis ATCC
           14672]
          Length = 476

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 194/476 (40%), Gaps = 20/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFVGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   V+DV  AL  LA     R   T++A+TGS G
Sbjct: 60  RVVEAGAAAVLASRP-------VGVPAIVVEDVQAALGALARHVVGRLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRHGPTVFTPGSLNNEIGLPLTALTATEETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P + ++  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 173 TGLTPPRVGLVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEG-GAAILNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG+S  AD +    +          +L   S         Y        
Sbjct: 232 MASRTKAKVILFGESDEADVRAENVRLTDSGQ-PSFRLHTPSGACDVTMRLYGEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 291 LAAAAVAHELGMPADEIARALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+ +   S    GR  AVLG M E+G+ + + H  +  +    N+S +    G     L
Sbjct: 351 ALAAMGKASQAKGGRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREAAWL 410

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 411 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 466


>gi|241664311|ref|YP_002982671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
 gi|240866338|gb|ACS63999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ralstonia
           pickettii 12D]
          Length = 478

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 120/472 (25%), Positives = 194/472 (41%), Gaps = 14/472 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +    D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V
Sbjct: 5   TVMMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKTT
Sbjct: 64  ARGAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 124 VKEMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + +P +A+I      H      +E +A   A +   L   G      D +       +
Sbjct: 184 AAIAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPANGVAVYPRDAANGGEYA-R 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  +        +A          ++   +EVQ  G+   +    +G H A+N L 
Sbjct: 243 VWKAAAGSRRVLDFGMDAGAVTGTVVDTADGQRIEVQAPGQRFVITLPLLGLHNARNALA 302

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                       +   +AL  F P +GR    +         +ID++YNANP SM+AAI 
Sbjct: 303 ATACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAID 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +       R  VLGDM E+G    +FH ++        I  V  +G       DA 
Sbjct: 360 ALVTLPA----PRWLVLGDMGEVGSKGPAFHEEIGAYARARGIDAVLATGELARHTVDAF 415

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                  +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 416 GPG--AQHFASAEDLIEHGVPAIAPAATVLVKGSRFMRMERIVEALVLKDPV 465


>gi|227522394|ref|ZP_03952443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227090452|gb|EEI25764.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 460

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 221/470 (47%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++++AI            Q  VNG+  D+R + P + F  + G H DGHDFI +A+
Sbjct: 3   MTIGEIVKAINASIENETDKILQTEVNGVCFDTRRLTPGQLFIPLSGTH-DGHDFIENAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA   +  +D   +   ++IP   VDD L A  KL+     +    +IA+TGS GKTT
Sbjct: 62  KGGAVATLWASDHT-NRLPVAIPALVVDDPLAAFQKLSKYYLTKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LS          ++NN IGVP T+ +M  + DF + E+GM   G++ FL+ L
Sbjct: 121 TKDMIASVLSGEFNVTKTYDNFNNEIGVPYTILQMESNTDFLVVEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A+IT I  AH+  F   ++IA AK EI  GL+  G    + D+     L  +   
Sbjct: 181 VEPDVAIITMIGEAHIEFFGTRDKIADAKMEITHGLKADGYFIYDGDEP----LLIERAK 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +  +FG+S   D    K       +  EV L     +V    +G +   N L  + 
Sbjct: 237 QVDFSKMTFGRSHTDDVFATKTSDGQYNTSFEVNL-WPDKKVTIPMMGDYNVNNALAAIT 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +        I+ LS F   +    R           ++ + YN+NP + +  ++  S
Sbjct: 296 VGKLFQIPQIEIIQKLSHF---DLTKNRTEWLTGNKGEKILSDVYNSNPTAAREVLTAFS 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
           Q      GRRI VLGDM E+G+ S   H  LA  +    I+ V+L G  + AL + L   
Sbjct: 353 QTDVM--GRRIVVLGDMLELGDKSSQMHASLANDIDSNEIAAVYLVGKDMQALYEKLKPV 410

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             P ++H + ++ +D L   ++  +   D V++K+S+      ++  L  
Sbjct: 411 FAPENLHYYQADQLDQLSDDLKRDIQPNDEVMLKASHGIHLENIVEKLTA 460


>gi|296449912|ref|ZP_06891676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296878293|ref|ZP_06902302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
 gi|296261182|gb|EFH08013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP08]
 gi|296430741|gb|EFH16579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium difficile NAP07]
          Length = 457

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 215/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+ A  G  I       V+ I IDSR    Q AF AI G + DGH F+  A   G
Sbjct: 4   LTIKELVLATNGKLIYGDYNDCVSDIVIDSREANAQNAFVAIVGENLDGHTFMKSAYDSG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               + N      + S  I +  V D   AL  ++   + +     I +TGSVGKTTT++
Sbjct: 64  CKTFIKNESNGIKLESSDINLIEVKDTSLALGNISKYYKEKFDIPFIGVTGSVGKTTTRD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+         + NNH GVPLTL  +  + +  + E+GMS   EI++L  +V P
Sbjct: 124 MIYSAISAKLNILKNEKNLNNHFGVPLTLFNLSKEHECAVIEMGMSGFNEIKYLVDIVNP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI+ I  +H+      E I  AK EI    ++  T+ +N DD F   LK K H   +
Sbjct: 184 KIAVISNIGLSHVEKLGSQEGILKAKMEITSNFDEANTLIVNGDDKFLSTLKEKEH---V 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG +KN D     +    +       + GK  E+    IG H   N +  + +  
Sbjct: 241 YKLKTFGFNKNNDIYCESYTMEEDSLTFICVINGKKEEIFIPTIGEHNIYNAMSAILVGL 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D   K L  F   + R       +     T+I++SYNA+P SM        +I 
Sbjct: 301 CLNISLDYIKKGLKNFKGTKMRL----DIIKNEKLTIINDSYNASPDSM----DAALKIL 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----R 420
              +GRR+A+LGD+ EMGE+S+  H  + +  S+ N   +   G + + + +        
Sbjct: 353 GRYKGRRVAILGDILEMGEISEYGHRLVGKS-SMNNTDIIITIGENSVFIGEEAKQLGFN 411

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S ++++ E  + +F  +   +  GD ++VK S      +++  L
Sbjct: 412 SANIYHFENREDVFNKLNELVKTGDTILVKGSRGMRLEKIVEYL 455


>gi|159027400|emb|CAO86884.1| murF [Microcystis aeruginosa PCC 7806]
          Length = 454

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 209/466 (44%), Gaps = 26/466 (5%)

Query: 5   WTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            + + L Q +       I   P   V+GI+ DSRSI   +AF A+KG +++GHDFI  A+
Sbjct: 5   LSLNQLAQLLSLQDKADISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFIDMAI 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  ++V+  +  +  S +IPVF V + L    +LA   R +    +IAITGSVGKTT
Sbjct: 65  ARGAAALIVDQPVSVNY-SSNIPVFLVKNTLKTYQQLAHWWRNQFTIPVIAITGSVGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L++  K +  + +YNN IGVP TL  +    D  + E+GM   GEI  L  +
Sbjct: 124 TKELIASVLATRGKVHKTLANYNNEIGVPKTLLELDETHDSAVIEMGMRGRGEIALLAQI 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P IAVIT +  AH+        IA AK E+      +    LNYD         +   
Sbjct: 184 AQPTIAVITNVGTAHIGRLGSESAIAEAKCELLSESPSSSIAVLNYDHPLLTETAKRVWQ 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T   FG                 +      L+   ++      G H A N +  L 
Sbjct: 244 GETITYGFFGGD------------IVGELLDLTTLRVNGLDFNLPLSGRHHALNFMAALA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  IL  D  +  + + V  P     +       +    L+DE+YNA   SM   ++ L 
Sbjct: 292 VAKILGIDWTSLQQGIKVNLPSGRAKRYQ----LEPDILLLDETYNAGLESM---LAALD 344

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
            +      R +AVLG M E+G  S+  H  + E +    I  +++         + +A  
Sbjct: 345 LLKATPGQRHLAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIAEAA- 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +     +T   L   ++  +  GD ++ K+S+S G  R++  L+
Sbjct: 404 TGVACECFQTHADLINRLKEVIDSGDRILCKASHSVGLNRVVEELI 449


>gi|319937767|ref|ZP_08012170.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
 gi|319807202|gb|EFW03816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Coprobacillus sp. 29_1]
          Length = 449

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 222/463 (47%), Gaps = 19/463 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++A  G  +    +  VNG + D+R I     +  + G + DGH +I  A   GA 
Sbjct: 3   IKEIIEATNGQLLSGDMEYDVNGFTQDTRKIESGNMYIPLVGENADGHQYIAQAFNLGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++    +     +    V  V D L A++ +A   R+  +  ++ ITGSVGKT+TK+M+
Sbjct: 63  SIITAHKVHYPDKN----VILVKDTLQAMSDMAKYLRMHRQVKVVGITGSVGKTSTKDMI 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              +S+  KT   +G+YNNHIG+PLT+ R+  + +  I E+GM+HLGEI  LT +  P +
Sbjct: 119 YSVVSTKYKTLKTLGNYNNHIGLPLTILRLQNE-EVMILEMGMNHLGEIEHLTQIALPDV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A IT I  AH+      E+I  AK EI  GL+  GT+ +N D+     + A++       
Sbjct: 178 AAITNIGTAHIGELGSREKILQAKMEIVNGLKSDGTLVINDDNDMLHTVNAEN-----YH 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G++++ D +    +   E S+ ++  QG+   V     G H   N L+ + I   L
Sbjct: 233 MIRVGQNEDCDLKAIDVELRLEDSYFDIDYQGQRYHVHVPVSGEHFVYNALIAIAIGLSL 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++  I  +  F   + R        N     +ID +YNAN  SMK++++VL+Q    
Sbjct: 293 DIDMNLCIAGVEHFELTKNRMDMIELKDNIK---VIDGTYNANLDSMKSSLAVLAQYPKR 349

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHV 424
                IAVL DM E+GE  Q+ H ++   +   NI  +   G     + +        + 
Sbjct: 350 K----IAVLADMLELGEYEQALHEEVGSYVVEKNIDELLCVGEASCYIVEKAQSLGLKNA 405

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++ E    L  ++   L   D +++K SN      ++  L E 
Sbjct: 406 YHFEDNQALMTYLDEMLEPEDTILIKGSNGMHLKEVVEHLKER 448


>gi|258514338|ref|YP_003190560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778043|gb|ACV61937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 457

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 192/468 (41%), Gaps = 17/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  ++   I    +       V+ +  D+R + P E FFA+KG +YD +DF+   
Sbjct: 1   MKTM-SLDEIAGVIGARQVQKGSVNEVSSVCTDTRRLKPGELFFALKGENYDANDFVEQG 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             K A  VVV+   V S  +    V  V D L AL  LA   R      +I +TGS GKT
Sbjct: 60  KAKQAAAVVVSR--VLSAVNSGTAVLQVQDSLKALQALARYNRQLFNIPVIGVTGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+M+   L    KT    G+YNN IG+PLTL  M       + E+ M   GEI FL  
Sbjct: 118 STKDMIASVLGVRYKTLKTSGNYNNEIGLPLTLLSMDSSHQTAVVEMAMRGRGEIDFLCQ 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  AVIT I  AHL      E IA+AK E+ + +   G   L+ + S    L     
Sbjct: 178 LARPTGAVITCIGEAHLELLGSRENIAAAKGEMLQHIGPQGFALLSGNSSLTRQLA---- 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L    +  +G     D +    +  S  S   V       ++     G H   N L  +
Sbjct: 234 GLTAGKVLFYGTEPQLDIRACDIQTGSNGSKFTVITSRGQEDIFLPIPGRHNIINSLAAV 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L   +      L+       R +  +        T+I++ YNANP S KAA++ L
Sbjct: 294 GVGLELGLSLPEIKAGLAEVVLTGMRMEIIKING----ITVINDVYNANPDSSKAALTTL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +  +     IAVLG M E+G  +   H ++          ++   G     +      
Sbjct: 350 ADLGHNRRK--IAVLGSMFELGCRAVEGHREVGRAAFAAGTEYLVTVGELARQIAVGAKN 407

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +      +   E        +       DV++VK S       +++ L
Sbjct: 408 AGMPADRIFVYEDKQRACDCLGELCKKEDVILVKGSRGMHMEEVVSYL 455


>gi|28377406|ref|NP_784298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum WCFS1]
 gi|254555589|ref|YP_003062006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
 gi|28270238|emb|CAD63139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum WCFS1]
 gi|254044516|gb|ACT61309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum JDM1]
          Length = 462

 Score =  259 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 213/466 (45%), Gaps = 18/466 (3%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ GA
Sbjct: 5   VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK+M
Sbjct: 64  VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P 
Sbjct: 123 IASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+     L  +      +
Sbjct: 183 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG                  S  + Q +        + I    A N+   L  + +
Sbjct: 239 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                     A            R           ++ + YN+NP + +  ++  + +  
Sbjct: 295 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
             +G+RIAVLGDM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L     + 
Sbjct: 354 -TKGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 412

Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY +T     L   + +++   D V++K S+     +++  L  
Sbjct: 413 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 458


>gi|310765086|gb|ADP10036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Erwinia sp. Ejp617]
          Length = 452

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 202/469 (43%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + Q   G   G      +  ++ D+R       F A+KG  +D HDF+L A
Sbjct: 1   MISV-TLQHIAQLTGGTLHG--SDVTIADVTTDTRKATAGSLFIALKGERFDAHDFVLDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  G   ++V+  +      + +    V D   AL +LA   R +S A I+A+TGS GKT
Sbjct: 58  INAGCSGLLVSKRL-----PVDVSQVVVADTRTALGQLAAWVRQQSDARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H GEI + T 
Sbjct: 113 SVKEMTAAILRECGETLYTAGNLNNDIGVPLTLLRLKPQHRYAVIELGANHQGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N +   +   +   H
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINGESHDWPHWQQALH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G           ++DF        ++ +   +      ++V     G H   N L   
Sbjct: 233 --GKTVWRFSPGQADSDFYASDVIISAQGTHFILHSPQGDVDVTLPLPGRHNIANALAAS 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      + +     L+D+SYNAN  SM AA  VL
Sbjct: 291 ALALSVGAPLSAVRRGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   
Sbjct: 348 AGMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAGIDKVLSTGLLSHGISDA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLEE 467
           S    +      L       L     +  +VK S S    +++ +L E+
Sbjct: 401 SGVGEHFADKAALGARAIELLAQHQHITLLVKGSRSASMEQVVQILQEK 449


>gi|37527522|ref|NP_930866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786957|emb|CAE16031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 459

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 138/474 (29%), Positives = 212/474 (44%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T   L Q   G              ++ ++ DSR +     F A+KG  +D HDF
Sbjct: 1   MISL-TLQQLSQVTDGVLNQVTEQQAANICISDVTTDSRRVGNGSLFIALKGERFDAHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV+ GAG ++V+      +  ++ P   V D   A+ KLA   R +S A ++A+TGS
Sbjct: 60  FADAVKAGAGALLVSR-----VLDINFPQVVVKDTRLAMGKLASWVRQQSNARVVALTGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM    L     T    G+ NN IGVPLTL R+    +F + ELG SH+GEI 
Sbjct: 115 SGKTSVKEMTAAILRQCGNTLYTAGNLNNDIGVPLTLFRLTEQHEFAVVELGASHVGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   + RP  A++  +  AHL++F  +  IA AK EIF GL + GT  +N + + +    
Sbjct: 175 YTVEMARPETALVNNLFAAHLADFGSLASIAKAKGEIFTGLSEKGTAIINMESNDWAHW- 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +         +S  ++  ADF     +     +   +     S E+     G H   N 
Sbjct: 234 QQVIGDKTVQRFSMQQASGADFYATDIQVKQLTTDFCLHTPIGSTEINLPLPGKHNVANA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      LS      GR      A       L+D++YNAN  SM  A
Sbjct: 294 LAASALAISVGATLQDIRLGLSELKAVPGRLFPINLAEG---KLLLDDTYNANVGSMTVA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VLSQ+     G R+ V+GD+  +GE S  +H  + E ++   I+ V+  G   + + +
Sbjct: 351 VQVLSQMP----GYRVLVVGDIGALGEQSADYHRQIGETVASCGINSVFSVGKLSIHVSE 406

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
           A   S    +      L   +   L    V  V+VK S +     +++ L E F
Sbjct: 407 A---SGCGQHFADKAALIATLVPLLQQHKVFSVLVKGSRNTTMEDVVHALQESF 457


>gi|154245792|ref|YP_001416750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Xanthobacter autotrophicus Py2]
 gi|154159877|gb|ABS67093.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Xanthobacter autotrophicus Py2]
          Length = 493

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 207/467 (44%), Positives = 269/467 (57%), Gaps = 3/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  ++++A      G      V GISIDSR++ P +AFFAI G + DGH ++  A+  
Sbjct: 22  LHTVGEMVEATGAAVRGAPHD--VTGISIDSRTLVPGDAFFAITGENSDGHAYVEKALGA 79

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L VV  D          P+  VDDVL AL  +A AAR RSKA I+A+TGSVGKTTTK
Sbjct: 80  GAALCVVARDRADGF-PADAPLLVVDDVLAALTDVARAARARSKAQIVAVTGSVGKTTTK 138

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L IAL +  +T+A   SYNNH GVPL+LAR P +  +G+FE+GM+H GEI  L  LVR
Sbjct: 139 EALRIALGADGETHASAASYNNHWGVPLSLARFPREARYGVFEIGMNHPGEITPLVRLVR 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++TT+ P H++ FS IEEIA AKAEIF+G+E  G   LN D+  F+ LKA + A G
Sbjct: 199 PHVAIVTTVEPVHIAQFSSIEEIADAKAEIFDGVEPGGAAVLNLDNPLFDRLKAAAAARG 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I  I SFG  + AD +L+     S  S     + G  +       G H+ QNML  L   
Sbjct: 259 ISRIVSFGSGEGADVRLKDAALKSYCSVAVADVMGTPVTFKVGMPGRHIVQNMLAVLAAA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  AD+  A  ALS   P  GRG   +  L  G  TL+DESYNANPASM+AA+ VLS+ 
Sbjct: 319 KLAGADMALAALALSHLKPPPGRGVPLQLQLKGGQATLLDESYNANPASMRAALDVLSRT 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRRIAVLGDM E+G   ++ H  LAE +    I  V+  G  + AL  ALP    
Sbjct: 379 PVGPRGRRIAVLGDMLELGPDGEAHHAGLAEAIVAAKIDQVYCCGPQMHALWQALPSERR 438

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             Y+     L   + +++  GD ++VK SN      L+  L E F A
Sbjct: 439 GGYAIHATHLEPMVAAAIRVGDTLMVKGSNGSRMGPLVKKLAERFRA 485


>gi|308179611|ref|YP_003923739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045102|gb|ADN97645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 462

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 212/466 (45%), Gaps = 18/466 (3%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ GA
Sbjct: 5   VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK+M
Sbjct: 64  VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P 
Sbjct: 123 IASVLGTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+     L  +      +
Sbjct: 183 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG                  S  + Q +        + I    A N+   L  + +
Sbjct: 239 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                     A            R           ++ + YN+NP + +  ++  + +  
Sbjct: 295 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
             +G+RIAVLGDM E+G+ S + H+ LA  L    I+ V+L+G H+ AL + L     + 
Sbjct: 354 -TKGQRIAVLGDMLELGDQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 412

Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY +T     L   + +++   D V++K S+     +++  L  
Sbjct: 413 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 458


>gi|326939904|gb|AEA15800.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 454

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 211/467 (45%), Gaps = 21/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  L   + L + + G  +        + G+ IDS+ I     F  I      DGHD++ 
Sbjct: 1   MIQLQ-LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPII--RVKDGHDYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++KGA   +             IP+  VDD L AL K+A   R  S   +I ITGS G
Sbjct: 58  EAMEKGAAASLWKKSYGD--PPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  K++++  LS+  + +   G+ N+ IG+PLT+  M  D +F I E+GMS  G+IR L
Sbjct: 116 KTMVKDIISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + +P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L ++
Sbjct: 176 AQIAQPDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP----LLSQ 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  +      SFG     D      +        ++       +V  HG        + +
Sbjct: 232 NINMLGIEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGI 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +              K             R++    +  FT+I++++NA+P+SMKAAI 
Sbjct: 292 AV-----GQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +++ + +   I V+GDM E+G+ ++++H ++ E+L+  +I +V+  G     + +  
Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEA 404

Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++     +   +    +   +   +   DVV++K S       ++ 
Sbjct: 405 RKNYHTGKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451


>gi|145297481|ref|YP_001140322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850253|gb|ABO88574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 451

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 203/470 (43%), Gaps = 27/470 (5%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    DL Q +    IG    G +  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLADLAQVLDARLIG--EDGEITTVSTDTRTLGKGALFVALRGERFDAHDFCDQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  ++V  ++     SL+IP   V D L  L  +    R R    ++AITGS GKTT
Sbjct: 59  AAGASALLVEREL-----SLAIPQLVVTDSLKGLGHIGKLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L    +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMTTAILRHEGEVLATAGNFNNEVGVPLTLLRLEPQHQFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D +F+   +A    
Sbjct: 174 ARPDAALINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEQGTAIVNADSAFWPKWQAA--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            GI   +S                    +   +      + +     G H   N L    
Sbjct: 231 -GIHCAFSIEDQNQPFHARGIALNGQGCAEFVMVTPNGELSLTLAIPGRHNVANALAAAA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L A + +    L    P +GR    R        TL+D++YNA+  S+ A I  L+
Sbjct: 290 GCLALGASLASVKAGLEQMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +     G ++ V GDM E+GE S   H  +    S   +  V   G       DA    
Sbjct: 346 AM----GGYKVLVFGDMKELGEESAEQHARVGRHASECGLDAVLTVGEQSRHTADAAA-- 399

Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEFP 469
               + +    LF  +   +       ++VK +       ++ ++++   
Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVKMVVDRQE 447


>gi|54298607|ref|YP_124976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Paris]
 gi|296108263|ref|YP_003619964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53752392|emb|CAH13824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Paris]
 gi|295650165|gb|ADG26012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 445

 Score =  259 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 204/444 (45%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + I
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 73  PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++            I     F     AD   +  
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 247

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +         L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNSRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR         Q   T+ID++YNAN  S+  A+ VL        GR+I V GDM E+G
Sbjct: 308 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A        +  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|325263135|ref|ZP_08129870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
 gi|324031528|gb|EGB92808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. D5]
          Length = 456

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 201/468 (42%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G        V G++IDSR I     F AI+G   DGH FI  ++ 
Sbjct: 4   MTLKEIAVACGGIYYGDDENYYKEVTGVTIDSRKIQKDCLFIAIRGARVDGHMFIPQSIH 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   V        I S S P   V+    AL  +A   R   +  ++ I+GSVGKT+T
Sbjct: 64  DGALCAVSEKR----IESASYPYIMVNSCAQALKDIAEHYRRSLRLKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLGQKYNVLKTEGNFNNEIGLPLTIFNIREEHEVAVLEMGISDFGEMERLAKMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + V+T I  AHL      E I  AK E+F  +   G I LN DD     L + + A 
Sbjct: 180 RPDVCVLTNIGCAHLEQLKSREGILKAKTEMFLYMNPKGDIILNGDDDM---LASVTPAN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I+ ++       A           + +                  G HM  N L  + +
Sbjct: 237 HIEPVFFGLDPALAYSAEDIENLGLKGTSALFHTPDSEFGAHISIPGAHMVYNALAAIAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  +     + +    P  GR           F T+ID+ YNANPASMKA++ VL  
Sbjct: 297 GRVLGMNDGEIRQGIESLVPLAGRNNLIE----TEFLTIIDDCYNANPASMKASLDVL-- 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LP 419
                +G  +A+LGDM E+G  +   H +  E  +   I  +   G+    +        
Sbjct: 351 --SKAKGHTVAILGDMFELGPKAHEMHCETGEFAAEAGIDELICIGYLSEDIARGAVSAN 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + VH+ +T       I + +   D ++VK+S++  F  ++ +L + 
Sbjct: 409 PEMEVHHFDTKTEFLDHIDTLINKDDTILVKASHAMEFPEIVEILKKR 456


>gi|291535664|emb|CBL08776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis M50/1]
          Length = 470

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 209/481 (43%), Gaps = 33/481 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + +   G   G        + G  IDSR +     F A+KG   DGH FI    +
Sbjct: 4   MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++    G    P   V+  LGA+ KLA   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEQELSDPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+ ++    +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I   HL N    + I  AK E FE L   GT  LN DD        K    
Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKLCE--KKMVNG 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQ--------------CSEQSWMEVQLQGKSMEVVHHGI 288
                Y  GK        +  K                 + +   + +  +S  V     
Sbjct: 238 KPVVFYGIGKEAKPAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L   VD   + +       GR       +++G  T+ID+ YNA
Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS----NLIHKGGMTIIDDCYNA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SMKA+I VL+       GR+IAVLGDM E+GE  Q  H  + E      I  ++ +G
Sbjct: 354 NPVSMKASIDVLA----AAPGRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAG 409

Query: 409 FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                L  A+    +   VHY +T D L   +   +  GD V+VK+S+  GF  ++  L 
Sbjct: 410 ALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQLT 469

Query: 466 E 466
           +
Sbjct: 470 K 470


>gi|154482958|ref|ZP_02025406.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
 gi|149736242|gb|EDM52128.1| hypothetical protein EUBVEN_00656 [Eubacterium ventriosum ATCC
           27560]
          Length = 452

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 21/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++ +A  G  +G        + G+  DSR I     +    G   DGHDFI     
Sbjct: 4   MTLENIAKACNGIYVGDEDLKSKEITGVEKDSRLIEDGYLYLPFVGARVDGHDFIPQVFD 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +   D+    G    P   V+ V  AL  +A   R +    II ITGSVGKT+T
Sbjct: 64  KGALCTLSEKDLNNPKG----PYIKVESVATALKDIAEFYRKQLSCKIIGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L    K     G+YNN IG PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 120 KEIIASVLEEKFKVLKTEGNYNNEIGEPLTILKIRDEHEVAVIEMGISDFEEMHRLAKVS 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP + VIT I   HL N    + +  AK E+F+   K   + LN DD     +K     +
Sbjct: 180 RPDVCVITNIGTCHLENLGDRDGVFKAKTEMFDYASKDCFVVLNGDDDKLSNVKE----V 235

Query: 243 GIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  FG   + D    K++    + + ++++   K ++ V    GYHM  N +  + 
Sbjct: 236 NGHAPVFFGIDTDRDVMAIKYESLGIQGTKVKIKYFDKELDTVIPIPGYHMIYNAMAAVC 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I S     +D     +       GR             T+ID+ YNANP SMKA+I+VL 
Sbjct: 296 IGSYFGMTLDEIDSGIRNLKAIGGRN----NIFTTNGITVIDDCYNANPMSMKASINVL- 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPR 420
                  GR++A+LGDM E+GE S+  H ++ +  ++  +  +   G     + + A+  
Sbjct: 351 ---SQANGRKVAILGDMFELGENSKKLHKEVGQ-AAVGKVDILVCIGNLSKDIAEAAIEG 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  Y          + + + +GD V++K+SN   F  ++  L 
Sbjct: 407 GCNTLYFPNKADFEDNLSAYIKEGDTVLIKASNGMKFKTIVEKLK 451


>gi|54295455|ref|YP_127870.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella pneumophila str. Lens]
 gi|53755287|emb|CAH16781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella pneumophila str. Lens]
          Length = 445

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 138/444 (31%), Positives = 204/444 (45%), Gaps = 19/444 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+SID+R++ P   FFAI G  +DGHDFI  A  KGA   VVN      I  + I
Sbjct: 17  NADITGVSIDTRTLKPGNLFFAIVGERFDGHDFIKEAEAKGASAAVVNR----LIDGVHI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V   L AL K+A A R      IIA+TGS GKTT KEM+   L     ++A  G+ 
Sbjct: 73  PQFVVVSPLMALAKIAAAHRQEMSCPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPL++  +     + +FELG +H GEI     +V+P +++I  IAPAH+  F  I
Sbjct: 131 NNHIGVPLSMLALNKQHRYAVFELGANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A +K EI +GL  TG   +N DD++            I     F     AD   +  
Sbjct: 191 DGVARSKGEIHQGLSPTGVAIVNDDDAYAHFWDDLIADKKILR---FSSLHPADIYAQDI 247

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  +         L    +E+     G H  +N L        +    +   + L+ F  
Sbjct: 248 RLDTHGRAHFTLVLPNGRVEIELQVPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR         Q   T+ID++YNAN  S+  A+ VL        GR+I V GDM E+G
Sbjct: 308 VKGRMT---MLSGQNQSTVIDDTYNANLRSVLTALEVL----SGRPGRKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E +   H ++        I  +   G H      A        +  + + L   +++ L 
Sbjct: 361 EWTTQHHREVGIAARQLGIDKLMSCGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLT 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
               V+VK S S     +++ L++
Sbjct: 419 PDTTVLVKGSRSSAMENVVHRLVQ 442


>gi|302391527|ref|YP_003827347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203604|gb|ADL12282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 465

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 211/468 (45%), Gaps = 13/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D +  I G  I    +  +  ISIDSR+I   E FFAIKG  +DGHDF++ A++ 
Sbjct: 3   IMTVDDFISEIDGRLISGNLKEEIKQISIDSRTINSGELFFAIKGDRFDGHDFVMDALRA 62

Query: 64  GAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            A   VV+ + V    ++     + GV+D   AL  LA   R      +I ITGS GKTT
Sbjct: 63  EAVGAVVDNEQVERYNNVDSDEVIIGVEDTTRALQDLAEYYRSLFDIPVIGITGSTGKTT 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+++   L +  KT    G+YNN  G+PLTL R+    +  + EL M  LG+I+ L  +
Sbjct: 123 TKDLVASVLETKFKTLKTEGNYNNEFGLPLTLFRLDSTYEAVVVELAMRGLGDIKTLCQI 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I V+T +   HL      E IA AK+E+ E L  TGT  LN DD +   +  ++ A
Sbjct: 183 AQPQIGVVTNVGLTHLECLGSQENIAKAKSELVENLPPTGTAILNGDDKYVRQMADETKA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +      G +  A                 V  Q +   +     G +   N L  +G
Sbjct: 243 EILYYGRESGNNLQASRV---DNLGEAGLKFRVSRQLEEFTIDLPLAGEYNVYNALAAVG 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  +++   + L+     +  G R      +   TLI+++YNANP SM+A + +L 
Sbjct: 300 VGLKLGLNINEIQQGLAE---PDLTGMRGEIKELKDDITLINDAYNANPTSMEAGLDLLV 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I     G  IAVLGDM E+G  ++  H  + + +    I ++   G     +     + 
Sbjct: 357 DIGTDKGG-LIAVLGDMLELGSAAEEAHRQIGKKVINKKIDYLLTVGDLASLIGQEAKKL 415

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              S  +   +    +   +   +   D +++K S       +   LL
Sbjct: 416 GMDSSRIFICDDNQEINRQLLQLIKPDDTILLKGSRGMKLEEVEKALL 463


>gi|284030816|ref|YP_003380747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
 gi|283810109|gb|ADB31948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanylligase [Kribbella flavida DSM 17836]
          Length = 470

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 201/476 (42%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +   +  A+ G   GI P   V G ++ DSR +     F A+ G   DGHD++  
Sbjct: 1   MIPV-SCGQIADAVGGELAGIDPAAVVTGAVAKDSREVVAGGLFVALPGERVDGHDYVPA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
             + GA + +    +         P   V D   AL +LA     +    T+I +TGS G
Sbjct: 60  VTEAGATVSLTTRPVD------GCPCIVVADTQVALGELARYVVAQLPELTVIGLTGSQG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   ++    T A  GS+NN IG PLT  +   D  + + E+G  HLG+I +L
Sbjct: 114 KTSTKDLIAQLVAPYGPTVAPTGSFNNEIGHPLTALQADRDTRYLVAEMGARHLGDIAYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++  +  +H+  F   + IA AK E+   +   GT  LN DD     + ++
Sbjct: 174 CRITPPKVGLVLNVGYSHIGEFGSRDAIAQAKGEMIANVAPGGTAVLNADDPRVAAMASR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +     +TI +FG++  AD +    +   E       L                      
Sbjct: 234 T----EQTIRTFGEAPEADVRATDLEVDGEG-RPGFTLHADGQSFPVQLQLIGEHNVSNA 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                + L   +     A  +         R          T+I+++YNANP S++AA+ 
Sbjct: 289 LAAATAALAVGLTPEQVADGLNAAARVSQARMEVVERPDGVTVINDAYNANPDSVRAALK 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  I    E R  AVLG+M E+G+ S + H  +  +    +++ +   G     +    
Sbjct: 349 ALVAIGRAREARTWAVLGEMLELGDSSATEHDAVGRLAVRLDVNRLLAVGEGAKPIHLGA 408

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                      Y  T+      ++  L  GDVV+VKSS +     L + LLE  PA
Sbjct: 409 SLEGSWGNESAYVATIAEALELLRGELRSGDVVLVKSSKAANLRSLADALLETAPA 464


>gi|240144454|ref|ZP_04743055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|257203565|gb|EEV01850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis L1-82]
 gi|291540931|emb|CBL14042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseburia intestinalis XB6B4]
          Length = 470

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 147/481 (30%), Positives = 209/481 (43%), Gaps = 33/481 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   + +   G   G        + G  IDSR +     F A+KG   DGH FI    +
Sbjct: 4   MTLERITEVCGGVYYGSEADKKKEIAGAVIDSRQVESGYLFIAVKGEKVDGHQFIPQVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+   ++    G    P   V+  LGA+ KLA   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEQELSEPAG----PYIRVESTLGAMKKLAAYYRRSLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+ ++    +  + E+G+S  GE+  L  + 
Sbjct: 120 KEMIASVLSQKYNVLKTEGNFNNEIGLPLTIFKIREQHEVAVLEMGISEFGEMHRLAEMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I   HL N    + I  AK E FE L   GT  LN DD        K    
Sbjct: 180 YPDICVITNIGLCHLENLLTRDGILKAKTESFEHLTPEGTAVLNGDDDKLCE--KKMVNG 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQ--------------CSEQSWMEVQLQGKSMEVVHHGI 288
                Y  GK        +  K                 + +   + +  +S  V     
Sbjct: 238 KPVVFYGIGKEAKLAKTEQGEKYLAEKEVYATDVEPVGLDGTKAVIHIGAESFAVTIPIA 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +   L   VD   + +       GR       +++G  T+ID+ YNA
Sbjct: 298 GEHNVYNALAAVCVAGKLGLSVDEMKRGIESVKTIGGRS----NLIHKGGMTIIDDCYNA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SMKA+I VL+       GR+IAVLGDM E+GE  Q  H  + E      I  ++ +G
Sbjct: 354 NPVSMKASIDVLA----AAPGRKIAVLGDMGELGENEQELHAMVGEHFEGKGIDALFAAG 409

Query: 409 FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                L  A+    +   VHY +T D L   +   +  GD V+VK+S+  GF  ++  L 
Sbjct: 410 ALSENLAQAVGKCSKETEVHYFKTKDELMEELLPYVKSGDTVLVKASHFMGFPEVVGQLT 469

Query: 466 E 466
           +
Sbjct: 470 K 470


>gi|331006873|ref|ZP_08330126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
 gi|330419324|gb|EGG93737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC1989]
          Length = 473

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 133/477 (27%), Positives = 210/477 (44%), Gaps = 23/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L +   G  I        + +SI++R+++  + F AIKG  +DGH F+ +A
Sbjct: 1   MIKPLDLQNLSRRFGGEVINNSHAVNFSSVSINTRTMSVGDLFVAIKGDQFDGHQFVANA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  +VV  ++V       +P + V D   AL  +A A R      I+AITGS GKT
Sbjct: 61  QNQGAIALVVEKEIV----DSDLPQWLVGDTTLALGHIAEAQRDNFLGKIVAITGSSGKT 116

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T K ML   L        +A  G+ NNHIGVPL+L  +     + + E+G S +GEI++L
Sbjct: 117 TVKGMLESILRVAVSDHVFATKGNLNNHIGVPLSLLSLKSQHQYAVIEMGASAVGEIQYL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + +P +A+I  +  AH+  F  I+ IA  K EI+ GL   G   +N  D +      +
Sbjct: 177 TQMAKPDVAMINNVMSAHVEGFGSIDNIAKGKGEIYNGLTNAGVAVINIADKYAPQWLEQ 236

Query: 239 SHALGIKTIYSFGKSKNADFQL--------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +         +     NA               ++ +  +  ++QL  KS E+    +G 
Sbjct: 237 NSQRQTLLFSASTDVSNAMDMNSVANITATNVKQKHNGCAKFDLQLLEKSTEINLSVLGM 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L        L   ++   + LS F    GR        +    T+ID+SYNANP
Sbjct: 297 HNVANALAASTCAYALNISIEDIAQGLSEFTGVAGRLHCLEGVND---STVIDDSYNANP 353

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S  AAI VLS +S       + V+GDM E+G+ S S H  +    +  NI  +   G  
Sbjct: 354 NSFCAAIDVLSDMSAKT----VLVMGDMAELGDDSDSEHEKIGRYANEKNIDLLLTLGRQ 409

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                          + ++++ L            V+++K S S    R++  L + 
Sbjct: 410 SEEASKVFSGDKQ--HFDSVEQLITVAVQQANKSTVLLIKGSRSSRMDRVVQALTQR 464


>gi|300769651|ref|ZP_07079535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300492804|gb|EFK27988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 468

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 213/466 (45%), Gaps = 18/466 (3%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +A+Q  ++    P   V G++ DSR +   + F  + G + DGH +I  A++ GA
Sbjct: 11  VAEIAKAVQAVNAEQAWPDVNVTGVAFDSRKLQAGDLFIPLMGAN-DGHQYIQSAIEHGA 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +  +D    +    +PV  V D L AL +L      +    ++A+TGS GKTTTK+M
Sbjct: 70  VATLWASDHADDVPE-DLPVIMVADTLTALQQLGQYYLQKINPKVVAVTGSNGKTTTKDM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+         ++NN IGVP+TL  M  + +  + E+GM H GE+ FL+ LV+P 
Sbjct: 129 IASVLSTQFNVTKTHANFNNQIGVPVTLLSMEPNTEVVVVEMGMDHFGELDFLSRLVQPD 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I  AH+  F   + IA AK EI  GL++ GT   N D+     L  +      +
Sbjct: 189 VAVITMIGEAHIEFFGTRDRIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAKEVSQ 244

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG                  S  + Q +        + I    A N+   L  + +
Sbjct: 245 HQRTFGLDDTNTLAGSDITT----SRAQTQFKTSLWPDNTYTIPMMGAYNVNNALAALLV 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                     A            R           ++ + YN+NP + +  ++  + +  
Sbjct: 301 ADTFHIRPAAAQQAIASFVPTENRTEWLTGYRGEAILSDVYNSNPTAARRVLAAFAAVP- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
             +G+RIAVLGDM E+GE S + H+ LA  L    I+ V+L+G H+ AL + L     + 
Sbjct: 360 -TKGQRIAVLGDMLELGEQSDALHMSLASELDPATIASVYLNGEHMRALAEVLQEKYPAG 418

Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY +T     L   + +++   D V++K S+     +++  L  
Sbjct: 419 AVHYYQTDQQPQLIADLTATVSADDQVLLKGSHGIHLEKVLTALEA 464


>gi|309783017|ref|ZP_07677736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918125|gb|EFP63803.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 473

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 193/470 (41%), Gaps = 14/470 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D    + G  +   P   +  ++ DSRS+ P + F A+ G  +D HDF+   V +
Sbjct: 2   MMHATDAAAWMAGAHLAG-PDAAILRVTTDSRSVQPGDLFVALIGERFDAHDFLPEVVAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+    A++   ++ V  V D    L +LA   R +    ++A+TGS GKTT K
Sbjct: 61  GAAAVLVSRPPAATLDMTNVAVLTVADTRIGLGQLAAGWRRQFPIPVVAVTGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM++   +      A     G++NN IG+PLTL R+       + ELGM+H GE   L  
Sbjct: 121 EMISAIFAQAVGEDARLATAGNFNNDIGLPLTLFRLNAQHKLAVLELGMNHPGETAVLAA 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+I      H      +E +A   A +   L   G      D +          
Sbjct: 181 IAQPTVAMINNAQREHQEFMVSVEAVAEEHAAVLAALPADGVAVYPRDAANGGEFAPVWQ 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A              A          +E   ++VQ  G+   +    +G H A+N L   
Sbjct: 241 AAAGSRRV-LDFGIEAGAVTGTVVDTAEGQRIDVQAPGQRFAITLPLLGLHNARNALAAT 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +   +AL  F P +GR    +         +ID++YNANP SM+AAI  L
Sbjct: 300 ACALAAGVAPEVIAQALGNFAPVKGR---LQRKQGTHGGLVIDDTYNANPDSMRAAIDAL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +       R  VLGDM E+G    +FH ++        I  V  +G       DA   
Sbjct: 357 ATLPA----PRWLVLGDMGEVGSQGPAFHEEIGAYARTRGIDAVLATGELARHTVDAFGA 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                +  + + L      ++     V+VK S      R++  L+ + P 
Sbjct: 413 G--AQHFASAEDLIEHGLGAIAPAATVLVKGSRFMRMERIVEALVLKDPV 460


>gi|167622391|ref|YP_001672685.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352413|gb|ABZ75026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 459

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 222/473 (46%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +L   ++G  IG     F++ +S DSR++  Q  F A+KG ++DGH F   A
Sbjct: 1   MISV-SLSELATRLKGQLIGD--DLFIDSVSSDSRAVNSQTLFVALKGENFDGHAFAQAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++      ++     V++   A+ ++    R +   T +A+TGS GKT
Sbjct: 58  VDAGANALLVEREL-----PINATQLIVNNSQKAMGEIGAYVREQVAPTCVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   +     G++NN IGVPLTL R+    +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSQKHQVLYTAGNFNNEIGVPLTLLRLQQGDEFGVFELGANHAGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +A AK+EIF  +   GT  +N DD+F +++   S 
Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHISTGGTAVINADDAFADVMLQASS 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +         ++                 +    +    +   V     G H   N L 
Sbjct: 233 HVKQLCFGVKNEASRDLDVFATDLIADTYGRYAFSLCYDAEVHRVELPLAGRHQVSNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I   L   +    + LS+  P +GR    +     G  T+ID+SYNANPAS+ AAI 
Sbjct: 293 ATSICIALGLSLPLICQGLSLLQPVKGRMLPSQ----LGRVTVIDDSYNANPASVGAAID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +I     G R  VLGD+ E+G+ +   H +L E+     +S ++  G        A 
Sbjct: 349 WLQEIK----GNRCLVLGDLGELGDNAALLHRELGELAKAKGVSALFCVGTLSEGASHAF 404

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468
                  +   +DGL   +   + +      V+VK S S    R++  L   +
Sbjct: 405 GSK----HYHDIDGLVAGLVQYINELPADITVLVKGSRSARMERVVEALTTAY 453


>gi|113971902|ref|YP_735695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
 gi|113886586|gb|ABI40638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-4]
          Length = 460

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F +++  KAK
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  SE  +  +    G+S EV     G H   N L
Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRIRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|114045892|ref|YP_736442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
 gi|113887334|gb|ABI41385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. MR-7]
          Length = 460

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DITIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVEREL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F +++  KAK
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQSGGTAIINADDAFADVMRVKAK 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  SE  +  +    G+S EV     G H   N L
Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|206889535|ref|YP_002249137.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741473|gb|ACI20530.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 444

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 208/463 (44%), Gaps = 21/463 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  DLL A  G  +    +      SID+R+I   + FFA+KG   DGH+F+  A+ K
Sbjct: 1   MFTLDDLLIATGGKLVSKGNEI-FKEASIDTRTIGKNDLFFALKGSKKDGHEFVDEALIK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A   VV+ +    +   +  V  VDD L +L  LA   R + K  IIA+ GS GKTTTK
Sbjct: 60  -ASGAVVSKN--EGMDFKNKTVVIVDDTLKSLQNLAGYLRKKFKGKIIAVVGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   LS   K     G++NN+IGVPL ++R+  + +  + ELG +  G+I+ L  +V 
Sbjct: 117 ELIASFLSKKYKILKTEGNFNNNIGVPLCISRIENNTEIMVLELGTNRPGDIKELCDIVY 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A+IT I   H+  F  I+ +         G  +          +  +          
Sbjct: 177 PDYALITNIGYEHIEGFGSIQGVRE-------GELEILPYVKTVFANGDDKFLMDGLKRY 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I +FG SK  DF+       ++    +      +  V    +G +   N+   + + 
Sbjct: 230 SGQILTFGMSKECDFRAENINFYNDHVEFDFYSDIAAFAVKTPLVGIYNIYNLTGAIAVA 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L     +  +    F   + RG+  +         +  ++YNANP+SMK A  +    
Sbjct: 290 TFLGISKCSIQQITESFTSVKMRGEIIKING----VEIFFDAYNANPSSMKVA--LQELT 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                 R +AVLGDM E+GE +   H ++ + ++   I      G     +K+AL R ++
Sbjct: 344 RRKKGRRTVAVLGDMLELGEFTDLAHEEVGKWVNEMGIDIFIGVG---KFIKNAL-RYVN 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +          F++  L   ++V++K S +    +++ +L E
Sbjct: 400 GYVFNDPIQAAEFLKKELKGSEIVLIKGSRAMKLEKILEILKE 442


>gi|316933182|ref|YP_004108164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
 gi|315600896|gb|ADU43431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Rhodopseudomonas palustris DX-1]
          Length = 479

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 193/467 (41%), Positives = 259/467 (55%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   + +A+     G +P+    GISIDSR++AP +A+FAI+G  +DGHDF+  A+ 
Sbjct: 5   PLWTSDAMAEAMAATRSGTLPRDVF-GISIDSRTLAPGDAYFAIRGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV         +   P+  VDDVL  L +L +AAR R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVEKAQRDKFAA-DAPLLVVDDVLEGLRRLGIAARSRLSAKVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +   T+A + S+NNH GVPLTLAR P  V + +FE+GM+H GEI  L  +V
Sbjct: 123 KEGLRSVLGAQGPTHASVASFNNHWGVPLTLARCPAGVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  FSG+E IA AK+EIF GLE  G   LN D   F+ L A +   
Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEGIADAKSEIFSGLEPGGIALLNRDTPMFDRLSANALRA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  I +FG    AD +L      ++ S +   + G  +       G HMA N L  L  
Sbjct: 243 NVGRIVTFGTDPAADARLLDVALHADCSAVHASILGHDVTYKIGMPGRHMALNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++ AD+  A  A+S   P  GRG R    +  G  TLIDESYNANPASM AA+ VL +
Sbjct: 303 AELVGADLALAALAMSQVQPAVGRGARKALPIGSGEATLIDESYNANPASMAAALGVLGR 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +GRRIAVLGDM E+G  +   H  L   +    I  V+  G  +  L DAL    
Sbjct: 363 AEIGAQGRRIAVLGDMLELGPTAGELHRGLEAAVRANGIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+     L   + +++  GD V+VK S       +IN + + FP
Sbjct: 423 RGGYAGDATALESQVVAAIRAGDAVMVKGSLGSRMKTIINAIEKRFP 469


>gi|297560753|ref|YP_003679727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845201|gb|ADH67221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 458

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 189/473 (39%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +  A  G      P   V G++ DSR   P + F A+ G   DGHDF   A
Sbjct: 1   MQPL-SLAQIATATGGRVTDADPATQVTGVAFDSREAIPGDLFVALPGQGRDGHDFAPSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
           V+ GA  V+           L +P   V+D L AL   A A         +IA+TGS GK
Sbjct: 60  VEAGAVAVLAARP-------LGLPAVVVEDPLAALGAWARAHVEALADLDVIAVTGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK+++   L     T    GS+NN IG+PLT      D    + E+G    G I +LT
Sbjct: 113 TSTKDLIAQVLDRAGATVFTQGSFNNEIGLPLTALEATADTRHLVVEMGARGQGHIAYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELLK 236
            +  P I  +  +  AH   F G +  A AK E+        + G   LN DD     + 
Sbjct: 173 GITPPRIGAVLNVGTAHAGEFGGPDMTARAKGELVEALPAAAEGGVAVLNADDPRVAAMS 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A++ A  +    +FG  + AD           +      L   + +           Q  
Sbjct: 233 ARTKAEVV----TFGVERAADVYATGVAL-DGRGRASFTLHTPAGQAPVRLQVVGEHQVP 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                      A +D      ++         R R        T++D++YNAN  S  AA
Sbjct: 288 NALAAAAVAGAAGMDVEQIGGALTAAVPVSEGRMRVTERPDGVTVVDDAYNANTDSTSAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALK 415
           +  L+ +     GR IA+LG+M E+G+ S+  H  +  + +   +  +   G     AL 
Sbjct: 348 LRALAHLGRESGGRTIALLGEMRELGDGSEREHRRVGALAASLGVDVLVAVGRAEAHALA 407

Query: 416 DALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D       V      D    +++   L  GDVV+VK +N+     L + L   
Sbjct: 408 DEYGPGGQV--VADRDAAGEWLERYGLRAGDVVLVKGANALKLGELADALAAR 458


>gi|299065604|emb|CBJ36776.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia solanacearum CMR15]
          Length = 485

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 122/474 (25%), Positives = 193/474 (40%), Gaps = 19/474 (4%)

Query: 4   LWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +    D    +   H +G  P   +  ++ DSR++ P + F A+ G  +D HDF+   V 
Sbjct: 8   MMHATDAAAWMAGAHLVG--PDAAIRRVTTDSRAVLPGDLFVALIGERFDAHDFLPDVVA 65

Query: 63  KGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +GA  V+V+    DM        + V  V D   AL +LA   R R    ++A+TGS GK
Sbjct: 66  RGAAAVLVSRRLADMPDLPDLSGVAVLSVADTRIALGQLAAGWRRRFPIPVVAVTGSNGK 125

Query: 120 TTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TT KEM++   +      A     G+ NN IG+PLTL R+       + ELGM+H GE  
Sbjct: 126 TTVKEMISAVFACAVGEAARLATAGNLNNDIGLPLTLFRLTAQHRLAVLELGMNHPGETE 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + +P +A+I      H      +E +A+  A +   L   G      D +      
Sbjct: 186 VLAAIAQPTVALINNAQREHQEFMVSVEAVAAEHAAVLAALPADGVAVFPRDVANGGDYA 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               A                         +    ++V             +G H A+N 
Sbjct: 246 PLWRAAAGTRRV-LDFGIEGGAVSAAVTDTANGQRIDVHAPDLRFSFTLPLLGVHNARNA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L             +   +ALS F P +GR    +         +ID++YNANP S++AA
Sbjct: 305 LAATACALAAGIAPEVIAQALSAFAPVKGR---LQRKPGHHGGLVIDDTYNANPDSVRAA 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L+ +       R  VLGDM E+G    +FH ++        I  V  +G   L + +
Sbjct: 362 IDALATLPA----PRWLVLGDMGEVGTQGPAFHREIGAYARERGIDAVLATGELTLHMVE 417

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           A        +  + + L      ++  G  V+VK S      R+++ L+ + PA
Sbjct: 418 AFGGGAR--HFASAEALIEQGVPAIAPGATVLVKGSRFMRMERIVDALVLKDPA 469


>gi|299782813|gb|ADJ40811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           CECT 5716]
          Length = 459

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDKWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPAD-GYPRLVVDDPLKALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+     L  +  A  
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +        Q          +G +   N L  + + 
Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +AL      E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|253579172|ref|ZP_04856442.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849270|gb|EES77230.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 456

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 199/471 (42%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G   +    V  +  DSR       F  I G   D H FI 
Sbjct: 1   MKNL-TLENIARVCGGTYYGPADKLQEEVMSVITDSRKAEEGCLFVPIVGERVDAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA   +        + +   P   V+  L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEAGALATLSER----VLDNADFPYIAVESSLQAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+    +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLNQKYHTLKTQGNFNNELGLPLTVFRLRDGDEIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   VIT I   HL N      +  AK EIF+ L   G I LN DD     +K  
Sbjct: 176 AQIARPDTCVITNIGTCHLENLGDRNGVLKAKTEIFKFLRPEGHIVLNGDDDKLITVKEY 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +    S       D   +   +  +     + L   +  V     G HM  N L 
Sbjct: 236 EKIKPVFFGMSNECQVYGD---KIVSRGLKGMTCTIHLGDTAFTVDIPMPGRHMVYNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + +I     D     +    P  GR +          F ++D+ YNANP SMKA++ 
Sbjct: 293 AAAVGNIYGLTTDQIKAGIESLEPISGRFRMIE----TDKFLIVDDCYNANPMSMKASLD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL      G GR+IAVLGDM E+GE     H ++ E     +I  +  +G     + +  
Sbjct: 349 VLQD----GAGRKIAVLGDMGELGENEVQLHEEVGEHAGKCDIDVLICTGKLCRNMAERA 404

Query: 419 PR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            R    + V Y    + L   ++  + DGD ++VK+S+   F  ++  L  
Sbjct: 405 QRTNPDLKVIYEPDRESLLEHLEGYVQDGDTILVKASHFMKFEEVVTKLEN 455


>gi|228474889|ref|ZP_04059618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
 gi|228271121|gb|EEK12501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus hominis SK119]
          Length = 451

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 203/466 (43%), Gaps = 16/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   + + I         +  + G++IDSR +  +  F   KG + DGH F+  A
Sbjct: 1   MIEV-SLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG             S+  P+  VDD L AL +LA A        +I +TGS GKT
Sbjct: 60  LKDGAGASFYEK-GQDISDSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L +  +     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ 
Sbjct: 119 TTKDMIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVIT I  +H+ +    E IA AK+EI  GL+  GT   + D+    LLK    
Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEP---LLKPHVE 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    + S G +       +     ++     +  +      +          NM    
Sbjct: 236 NVKNAKLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYELPIL------GIHNMKNAT 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++I                  +  G R    +     T+I+++YNA+P SMKAAI  L
Sbjct: 290 IAIAIGHELGLDYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GR+I VL D  E+GE SQ  H D+   L    I  +   G     +      
Sbjct: 350 SHM----NGRKIIVLADSLELGENSQRMHEDVGAYLEDKGIHTLLTYGNDAKFISRTGGH 405

Query: 421 SIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +  V Y    + L  +++S L   D V++K S       ++N L+
Sbjct: 406 FVEDVAYFSDKNELTHYLKSILQPDDKVLIKGSRGNKLEEVVNALI 451


>gi|49477542|ref|YP_036327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49329098|gb|AAT59744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 454

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 118/468 (25%), Positives = 212/468 (45%), Gaps = 21/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  +     L + I G           ++G+ IDS+++     F  I      DGHD++ 
Sbjct: 1   MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNLFVPII--RVKDGHDYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +             +P+  VD+ L AL +LA   R      +I ITGS G
Sbjct: 58  EAMDNGAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L
Sbjct: 116 KTTVKDIIESILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGQIRNL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++
Sbjct: 176 SRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           ++        +FG+    D      +        ++       +V  HG        + +
Sbjct: 232 NNKTSSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGI 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +              K             R++    +  FT+I++++NA+P+SMKAAI 
Sbjct: 292 AV-----GQFYKVPTEKIQEALQQINITQMRFQFLTAKKGFTIINDAWNASPSSMKAAIE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +++ + +   I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +  
Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEA 404

Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            ++     V   +    +   +   +   DVV++K S       ++  
Sbjct: 405 RKNYHIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQK 452


>gi|184154684|ref|YP_001843024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183226028|dbj|BAG26544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 459

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPIVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+     L  +  A  
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +        Q          +G +   N L  + + 
Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +AL      E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|149377266|ref|ZP_01895013.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
 gi|149358454|gb|EDM46929.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter algicola
           DG893]
          Length = 463

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 143/468 (30%), Positives = 217/468 (46%), Gaps = 14/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   +   D +  + G             G+S D+R IA  + F A++G ++DGHD++  
Sbjct: 1   MMRPFALADAVNWLGGTVAVGDLDGLMFQGVSTDTRRIASGDVFVALRGENFDGHDYLAV 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA   VV+     +  S+ +P   V D + AL +LA+A R  S A  +AITGS GK
Sbjct: 61  AEKAGAVAAVVDK----ADPSMGLPQIRVSDTIDALAQLALANRNASTARFVAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT +EM+   LS +  T A  G+ NNHIGVPLTL R+  +   G  ELG S LGEI    
Sbjct: 117 TTVREMVAAILSQVGNTLATEGNLNNHIGVPLTLFRLSPEHQLGAIELGASGLGEIAHTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++VRP + ++T    AHL  F G + +  AK EI +G  +TG + LN DD  F+L + ++
Sbjct: 177 NIVRPEVVILTNAGQAHLEGFGGYDNVVRAKGEIIDGAPETGLVVLNSDDPAFDLWRQRA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  +                     + +      G S +V     G H   N L+ 
Sbjct: 237 GQRRVAGVSGRASEGADYVPNDIHSDGDVRMFCAQGPDGWSCDVRLSLQGEHNITNALLA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L AD +     L+   P +GR    +  +     T+ID+SYNANPASMKAA+ V
Sbjct: 297 IAAARELGADNEAIKAGLAALKPVKGR---LQMMVLTPKLTVIDDSYNANPASMKAALDV 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+          +AVLG M E+G+ S + H ++ E      I  +   G       +   
Sbjct: 354 LAARPASR----VAVLGAMAELGQDSLALHREIGEFARARGIERLIAVGPGCEGYVEGFG 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  V    + D     +     +   V+VK S S    R++  + E+
Sbjct: 410 DAAEV--CASHDDAVRRLFEGPAESQTVLVKGSRSSAMDRVVEGIQEK 455


>gi|95930735|ref|ZP_01313468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133215|gb|EAT14881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 456

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 134/468 (28%), Positives = 217/468 (46%), Gaps = 18/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T   +   + G  +       +NG+S DSR++   + F  +KGP+YDGHD++  A
Sbjct: 1   MN--LTSDQVATIVGGRRLAAATDPEINGLSTDSRTLQSGDLFVPLKGPNYDGHDYLRQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA   +        +G L +PV  V+D L AL +LA   R      ++A+TG+ GKT
Sbjct: 59  VEHGAAACLSE----EVVGGLPVPVIQVEDTLQALGELARTIRSGFDGPVLAVTGTTGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+         G++NN IG+PLTLAR+  +  + + ELGMS  GEI  LT 
Sbjct: 115 STKEMLASILAQGSDGLKTEGNFNNLIGLPLTLARLSDEHRWMVLELGMSQHGEIERLTE 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A+IT +   HL+    IE +A AK E+F GL+           +  + L A   
Sbjct: 175 IAQPDVALITNVGAGHLAGVGNIEGVARAKGELFSGLKAG----ATAVVNRDDALIAALP 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +  F  +     +        + S+         + V     G H   N L   
Sbjct: 231 IPDGVRVIDFSLTYQTQVRATSIDSGQQASFTLHV-GESQVRVELPLPGRHQVYNALAAA 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   ++     L      +    R          T++D+SYNANP SM+AA+SVL
Sbjct: 290 AAAHAVGCSLEQIATGLGC---VKMAAGRLEVRTLPHGATVLDDSYNANPQSMQAALSVL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
           S      +G +IAVLGDM E+G++SQ+ H +L  + +      V   G    A+   +  
Sbjct: 347 SDWP--CQGTKIAVLGDMLELGDVSQACHEELGRLAAQRA-EQVLCYGDWAAAVLKGVVE 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +        + D +  +++  + + D ++VK S      ++++ LL +
Sbjct: 404 QGGQGAICTSHDEILDWLERQVREDDCILVKGSRGMRMEKVVHALLAQ 451


>gi|260663733|ref|ZP_05864621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260551784|gb|EEX24900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 459

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 214/469 (45%), Gaps = 19/469 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   ++IA AK EI  GL + GT   + D+     L  +  A  
Sbjct: 181 PDIAVVTMIGEAHIEFFGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKL 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D          +        Q          +G +   N L  + + 
Sbjct: 237 SQQTKTFGRQLDDDLYATSVNPDVDHVS-FTVNQWPDEVFTIPLVGEYNVNNALAAMTVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++        +AL      E    R           ++ + YN+NP ++K  ++ L+ I
Sbjct: 296 KLMHVTPANMKQALQN---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                G+R+AVLGDM E+GE S   H  L + +   ++  V+L G  + ALKDAL ++  
Sbjct: 353 PV--AGKRVAVLGDMLELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGY 410

Query: 423 -----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                H + +     L   +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 411 PAGQLHYYQAAQRKALTDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 459


>gi|163746124|ref|ZP_02153483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380869|gb|EDQ05279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 477

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 166/478 (34%), Positives = 244/478 (51%), Gaps = 21/478 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +  +A  G   G       NG+SID+R++ P + F A+K    DGH+F+  A
Sbjct: 1   MS-LWTATEAAEATGGRVQG---DWACNGVSIDTRTLQPGDLFVALKAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVG 118
           +  GAG  +V    V        P+  V+DV  AL  L  A R R   +A + A+TGSVG
Sbjct: 56  LDSGAGAALVTH--VPEGVGEDAPLLIVEDVQTALEALGRAGRARLGPQAKVAAVTGSVG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEML        K +A + SYNNH GVPLTLARMP D D+ + E+GM+H GEI  L
Sbjct: 114 KTSTKEMLLAIFGDQGKAHASVDSYNNHWGVPLTLARMPRDTDYAVIEIGMNHPGEIAPL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +PH A++T +A  HL  F  +  IA  KA IF+G+E  G   +N D    +++  K
Sbjct: 174 AKQAQPHAAMVTNVAAVHLEAFKDVAAIAVEKASIFDGMEPGGVAVINADHDHSDIVLDK 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +   G+    +FG+  +  + L   K   E +  + ++ G  +       G H A N L 
Sbjct: 234 ALERGL-RETTFGRKGHH-YTLTDVKVQGEATVAQAEVSGAPLLYKIATPGRHFAMNALG 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR----CALNQGFFTLIDESYNANPASMK 354
            L +   L AD   A+++L  + P  GRG R +       N     LID+SYNANP SM 
Sbjct: 292 ALAVAEALGADRALAVQSLGRWSPYVGRGVREQILLDPVDNHLTLELIDDSYNANPTSMA 351

Query: 355 AA------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           AA        V   I    +GRRIA +GDM E+G  + + H  LA++ +   +  V   G
Sbjct: 352 AALEVLAASEVTHDIGRVSKGRRIAFVGDMKELGPEALALHAGLADLEATRALDVVHCVG 411

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + A  D LP      ++ET + +   +++ L  GDVV++K S S     +++ + +
Sbjct: 412 PLMKAFYDNLPEHQRGDWTETAEEMLQGLRARLDSGDVVLIKGSLSMKLGSIVDAIRK 469


>gi|293401064|ref|ZP_06645209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306090|gb|EFE47334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 465

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 120/466 (25%), Positives = 203/466 (43%), Gaps = 15/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++ +    I     +  + G+ IDSR +     +  I G   +GH ++  A+  G
Sbjct: 5   SIDAIIRMLDADYIENGAIEEKIQGVCIDSRKVVEGNLYIPIHGVKNNGHAYVAQAIANG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+             + V  V+D   AL  LA A R +    ++ ITGS GKT+TK+
Sbjct: 65  AKAVLWERK--EPNPPKEVVVILVEDTTKALQDLAKAYRHQLNMKVVGITGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L     T   +G+YNN IGVPLTL  +  +V+  + E+GM +LGE+ FLTH+V P
Sbjct: 123 ILASLLQEHYITQKTLGNYNNEIGVPLTLLSLSENVEAAVIEMGMENLGELSFLTHMVEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+I+ +  AHL N   +E IA AK EI EGL++ G    N D    +    ++   G 
Sbjct: 183 DIAIISNVGTAHLENLKTMENIAKAKLEIVEGLKEHGLFIYNGDQEILQNAVTQAQIPGH 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I +FG     D+ +    Q  E     +        V   G    M            
Sbjct: 243 IRIRTFGVKPQNDYVISHITQKREGVSFCLNDDVCPYHVDMIGKHQAMNATAAWIAAKAL 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L+ +                        ++ G   ++++SY +NP S  AA+  + +  
Sbjct: 303 GLSVEEIREGYQNIEKTGLRNE------LVDFGNCLILNDSYKSNPQSALAALDTMEEFD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
              +   IAVLGDM E+G+ S   H  L + L+ Y+++ V   G     +          
Sbjct: 357 VPYK---IAVLGDMLELGDTSDMIHYTLGKDLAKYHLNEVLTIGDMARYITQGAFNNLTG 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +H+ +    + L  +++       +++VK S       +++ L+++
Sbjct: 414 VHIEHFTDKEALICYLRPYEHKDCMLLVKGSRGMKLDEVVDALVKK 459


>gi|222053877|ref|YP_002536239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
 gi|221563166|gb|ACM19138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. FRC-32]
          Length = 468

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 208/470 (44%), Gaps = 17/470 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +++QA  G  IG      V+G+S DSRS+   + F A+KG  +DGH+FI  A+ K
Sbjct: 1   MLSIDEIIQATGGTLIGSGG-KMVSGVSTDSRSVVAGQLFVALKGDRFDGHEFIETALAK 59

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    +V  D +A+     +     V + L AL  LA   R +    +I ITGS GKTTT
Sbjct: 60  GVRTFLVAADSLAARAPAENASYIAVTETLRALGDLAAGYRRKFSIPLIGITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L          G+ NN IG+PL L RM     + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLATILGQTGPGLKTSGNLNNLIGLPLMLLRMTGRDRWAVLEMGMSEPGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT    AHL++   +E +A AK E+F+ L+  G    N DD     L ++    
Sbjct: 180 EPGVGIITNAFTAHLASMGSVEAVAKAKGELFQRLKTGGVAVYNADDP----LISRLPTA 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  SFG                E     ++L    + V     G H   N L     
Sbjct: 236 AGVSRLSFGLRGAEVSSEGIKTLGLEGVRFTLRLPDGEIPVKMRAFGQHNIYNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D  T    L  F P      +       G   LID+SYNANPAS+ AA+  L  
Sbjct: 296 AHAIGLDHQTIRAGLEEFTP----YDKRFHVEQVGDIVLIDDSYNANPASIAAALVTLKD 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I      R IAVLGDM E+G  + + H ++  +L+   +  +++ G +   +        
Sbjct: 352 IRQQN--RAIAVLGDMLELGSGAPAAHREVG-LLAATCVERLYVMGEYAETVAAGAVDGG 408

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               H++ + +   +   ++  +  GD ++VK S      ++   +   F
Sbjct: 409 MGADHIYVAGSHGEIVEDLRRKVTKGDNILVKGSRGMHMDKVAEAIRNGF 458


>gi|218532976|ref|YP_002423792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
 gi|218525279|gb|ACK85864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium chloromethanicum CM4]
          Length = 487

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 187/475 (39%), Positives = 267/475 (56%), Gaps = 10/475 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+  PLWT   L  A  G  IG      V G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MSDAPLWTPAALEAATGGRLIGAP--RAVTGASIDTRSLEPGDLFFAIRGEARDGHDFVR 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A+ KGAG  VV          +   V  V     D VL A+ +L +AAR R++A I+A+
Sbjct: 59  AALDKGAGAAVVAEARAKEFEGVG-SVLAVPGEGDDPVLDAMRRLGLAARARTEAAIVAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTL RMP    FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLTRMPEATRFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D+  +E
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNPNYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L A + A     + +FG+   AD +  +     + S ++  + G  +       G H+A
Sbjct: 238 RLLAHAQASRAGRVITFGEHAAADVRAHRILTRPDVSVVDATVMGVPVTYQLGTPGRHVA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L  +  L AD+  A  +L+   P  GRG+R    +  G   L+DESYNANPAS+
Sbjct: 298 MNSLGVLACIHALGADLARAALSLASLKPPVGRGERTALRIGDGEAFLVDESYNANPASI 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA++ L+ I    +GRRIAVLGDM E+G   ++ H +LA+ ++   I  V+  G  +  
Sbjct: 358 RAALATLAGIDTGVKGRRIAVLGDMKELGAAGEALHRELADAVAANGIDLVFAVGPLMAH 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L +ALP ++    + T +G+   + ++L  GD V+VK SNS    R++  +   +
Sbjct: 418 LFEALPMTVRGTAAPTAEGVTDAVLATLRPGDAVMVKGSNSMRMVRIVEAVKARY 472


>gi|254391591|ref|ZP_05006790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812136|ref|ZP_06770779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|326440708|ref|ZP_08215442.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|197705277|gb|EDY51089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324735|gb|EFG06378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 479

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 197/479 (41%), Gaps = 26/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G S  I      V G +  DSR + P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAIVGGQSYDIPDADRLVTGPVVTDSRRVGPGSLFTAFAGERADGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+           + +P   VDDV  AL  LA     R   T +A+TGS G
Sbjct: 60  RAVADGAVAVLATRP-------VGVPAIVVDDVTAALGALARHVVERLGTTTVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    G+ NN IG+PLT  R     +  + E+G  ++G+IR+L
Sbjct: 113 KTSTKDLIAQLLERKGPTVYPEGNLNNEIGLPLTALRADESTEHLVLEMGARYIGDIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELL 235
           T LV P I ++  +  AHL  F   E IA AK E+ E L          LN DD     +
Sbjct: 173 TGLVPPRIGLVLNVGTAHLGEFGSRERIAEAKGEMVESLPSGEEGGVAVLNADDPLVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             ++ A     +  FG+  +AD +    +   +               V   +       
Sbjct: 233 AERTRA----RVVLFGEHSSADIRAANVRLTRQGRPAFTLHTPTGCSDVTMRLY-GEHHV 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                         +     AL++         R          T+++++YNANP SM+A
Sbjct: 288 SNALAAAAVAHELGLSADEIALALSEAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRA 347

Query: 356 AISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411
           A+  L+ +   +    GR  AVLG M E+G+ + + H  +  +    N+S +    G   
Sbjct: 348 ALRALAAMGQGAQSRGGRTWAVLGLMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREA 407

Query: 412 LAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L     +         +          ++S L  GDVV+VK+S S G  R+   LL+
Sbjct: 408 SWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLERVAQALLD 466


>gi|228985293|ref|ZP_04145456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774448|gb|EEM22851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 460

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 114/462 (24%), Positives = 209/462 (45%), Gaps = 18/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  K +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYKVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      +EIA AK EI + L + G    N D+     L ++++   
Sbjct: 187 PDVAVITMIGQSHLETLGSRKEIAKAKLEIIDWLRENGLFLYNGDEP----LLSRNNKTS 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG+    D      +        ++       +V  HG        + + +   
Sbjct: 243 SVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K             R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 300 --GQFYKVPIEKIQEALQQINITKMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + + +     V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYH 415

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              +   +    +   +   +   DVV++K S       ++ 
Sbjct: 416 TGKIKSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457


>gi|239978975|ref|ZP_04701499.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces albus J1074]
 gi|291450854|ref|ZP_06590244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
 gi|291353803|gb|EFE80705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces albus J1074]
          Length = 474

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 204/477 (42%), Gaps = 23/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    I      V G + IDSR  AP   F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEISSIVGGQPADIPDLDAQVTGPVVIDSRLAAPGSLFAAFAGERADGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   VDDV  AL  LA A   R   T++A+TGS G
Sbjct: 60  TAVETGAVAVLATRP-------VGVPALVVDDVERALGALARAVVERLGTTVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L+ +  T    GS NN IG+PLT  R   D    + E+G   +G IR+L
Sbjct: 113 KTSTKDLVAQLLTRVAPTVWTPGSLNNEIGLPLTALRAEADTRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I V+  +  AH+  F G E+IA AK E+ E L + G   LN DD +   + ++
Sbjct: 173 TGLTPPRIGVVLNVGSAHIGEFGGREQIAQAKGELVEALPEDGVAILNADDRYVRDMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     + +FG++  AD +    +           L   S         Y        
Sbjct: 233 TKA----RVVTFGEAPEADIRAENVRLTENG-RPAFTLHTPSGCGDVTMRLYGEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++   +     R          T+++++YNANP SM+AA+ 
Sbjct: 288 LAAAAVASELGMPVDEIAQALSEAESLSRWRMEVTERPDGVTIVNDAYNANPESMRAALR 347

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L  +        GR  AVLG M E+G+ + + H  +  +    N+S +    G     L
Sbjct: 348 ALVAMGGARRGEGGRTWAVLGQMAELGDEALTEHDAVGRLAVRLNVSKLVAVGGREAAWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +         +          ++S L  GDVV+VK+S S G  ++   LL +
Sbjct: 408 QMGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAAALLAD 464


>gi|153816393|ref|ZP_01969061.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
 gi|145846281|gb|EDK23199.1| hypothetical protein RUMTOR_02645 [Ruminococcus torques ATCC 27756]
          Length = 483

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 127/485 (26%), Positives = 193/485 (39%), Gaps = 38/485 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+ + IDSR       F AI+G   DGH FI   ++
Sbjct: 14  MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   V   D    +G +      V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 74  QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 129

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+S   E+  L  + 
Sbjct: 130 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+T I  AH+ N    + I  AK E+F  + + GTI LN DD     L+  S   
Sbjct: 190 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 246

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  +Y                +    +  +      S     +  G HM  N L    +
Sbjct: 247 GITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAV 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L          +    P  GR    R       FT+ID+ YNANP SMKA++ VL+ 
Sbjct: 307 GYALGMTDREICAGIEANVPIAGRNNLIR----APHFTIIDDCYNANPTSMKASLDVLAF 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
                     A+LGDM E+GE  +  H ++        I  +   G  + +  D      
Sbjct: 363 ADTRKA----AILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEYL 418

Query: 421 -------------------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                                 + +  T        +  L +GD V+VK+S+   F  ++
Sbjct: 419 EQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEIV 478

Query: 462 NLLLE 466
             L +
Sbjct: 479 EFLQQ 483


>gi|310642991|ref|YP_003947749.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Paenibacillus polymyxa SC2]
 gi|309247941|gb|ADO57508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paenibacillus polymyxa SC2]
          Length = 467

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 215/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63
           T   +     G        +  V G+  DSR       F  + G  +DGH ++     ++
Sbjct: 4   TIGQIASMCGGTLHAEADAERMVEGVFTDSRRPQSLGLFVPLVGERFDGHHYVQQIVSER 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D  A     ++    V+D L AL  LA A    +  +++ ITGS GKTTTK
Sbjct: 64  GATAYLWQKDHGAPP---TVNAIEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L +  K +   G+YNNHIG+PLT+  MP D D  + E+GMS  GEIR L ++ +
Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILVLEMGMSGRGEIRLLANIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL       EIA AK EI  G++  G +  N D+     + A+   + 
Sbjct: 181 PDVAVITNIGESHLLQLGSRTEIARAKLEIASGIKPGGLLIYNGDEPLLPQVLAEPETVK 240

Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +   +++FG + + D    +     E S   +  Q          +G H   N L  L 
Sbjct: 241 PEGLELFTFGLAADNDDYPTEITSDGEGSL-FITAQSGQEAFRLPLLGQHNVVNGLAALA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D D   K LS     +  G R          T+++++YNA+PASMKAAI  LS
Sbjct: 300 VARHFNVDADHIRKGLS---SLKLTGMRIEVVKCSDGLTVLNDAYNASPASMKAAIQTLS 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
                  GR+IAVLGDM E+G   + FH ++    + +NI  ++  G    ++       
Sbjct: 357 AY--KTGGRKIAVLGDMLELGAEEKQFHEEIGRFAAKHNIEALFTYGALGASIAQGAQGT 414

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +VH       L   ++S L   D+V+VK+S       +++ L  
Sbjct: 415 MPTANVHAYTDKQKLIQHLRSYLHADDIVLVKASRGMRLEEIVDALKN 462


>gi|52425726|ref|YP_088863.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307778|gb|AAU38278.1| MurF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 461

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 211/478 (44%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     + Q ++   IG      +  +S D+R   P   FFA+KG  +DGH+++  A
Sbjct: 1   MIKL-NVKKIAQILKAKLIGE-ETLTIESVSTDTRRKMPNGLFFALKGEKFDGHNYLAEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV+         + +P   V D   AL +LA   R   +   +AITGS GKT
Sbjct: 59  VAQGCTAVVVDHPC-----EIDVPQLVVKDTRLALGRLAAWLRRELEPLTVAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L              G++NN IGVPLTL R+    ++ + ELG +H GEI 
Sbjct: 114 TVKEMTAAILQRTAGDDEAVLFTEGNFNNDIGVPLTLLRLTEKHEYAVIELGANHAGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +  HL  P +A++  ++ AHL  F  +E +A AK EI+ GL   G   LN D ++     
Sbjct: 174 YTAHLTMPDVALVNNVSAAHLEGFGSVEGVAQAKGEIYSGLTPDGVAILNLDSNYAHYWG 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              +    ++         AD+   K       S   +     ++++    +G H   N 
Sbjct: 234 GDINDREFESFAY--DHVGADYYAEKIMLSEYGSRFTLNTPKGAIKIELPYLGKHNVANA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +   + A ++   + L      +GR    + + N     L+D++YNAN AS+   
Sbjct: 292 VAASALAMNVGASLEDIKRGLENPSHVKGRLFPIQLSTN---LLLLDDTYNANVASV--- 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            S +S +S + E  RI   GDM E+G+ + S H ++A+     N+  V   G     +  
Sbjct: 346 KSAISVLSDYREAFRIFAFGDMAELGDETISCHQEVADFAKAANLDLVVTYGSESAVVSK 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468
           A        +    + L   ++  +      + D+V++ K S S     +IN L + F
Sbjct: 406 A----CGGVHFSNKEALIASLKEIISHQLKENEDIVLLAKGSRSMKMEDVINSLKDRF 459


>gi|117922179|ref|YP_871371.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
 gi|117614511|gb|ABK49965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. ANA-3]
          Length = 460

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 145/468 (30%), Positives = 225/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      +  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLEALSQHLSAHRVGD--DVTIQALSSDSRKIGPATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V   +     +  +P   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAVALLVERQL-----AFDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRPH+A++  +  AHL  F     +A AK+EI+  L+  GT  +N DD+F +++  KAK
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVKAK 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  SE  +  +    G+S EV     G H   N L
Sbjct: 233 QYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLTQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|163794523|ref|ZP_02188494.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180247|gb|EDP64770.1| UDP-N-acetylmuramyl pentapeptide synthase [alpha proteobacterium
           BAL199]
          Length = 475

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 180/467 (38%), Positives = 261/467 (55%), Gaps = 5/467 (1%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   LWT  + + A  G  +G       +G++ID+R++ P + F A+ G   DGHD++  
Sbjct: 1   MTAVLWTRAEAVVATGGTPLGR--DWQASGVAIDTRTVQPGDLFVALSGERVDGHDYVEQ 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+Q GA   +V+     +  + S P+  V D L  L +L  AAR RS A I A+TGSVGK
Sbjct: 59  ALQTGASAALVSR--RPADLAASAPLLMVADPLAGLAELGRAARDRSSARIAAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T +KEML  AL++   T+A  G+ NNHIG PL+LAR   D  F +FELGM+H  EIR L+
Sbjct: 117 TGSKEMLAAALAAYGTTHASKGNLNNHIGAPLSLARFSRDAAFAVFELGMNHPEEIRPLS 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH A+IT +   H   F+GIE+IA AKAEIF+GLE  GT+ LN D+S F  L   +
Sbjct: 177 RLVRPHAALITNVEMVHAGFFAGIEQIADAKAEIFDGLEPGGTVVLNRDNSQFGRLAGHA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L I+ I  FG   +A+ +L         + ++ ++ G+ M     GIG H A N L  
Sbjct: 237 GRLAIERIIGFGTGTDAEARLLNTASDHAGTRVDAEIAGRRMSWTVGGIGRHWAINSLGV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D    + AL       GRG + + +L  G  TLIDESYNA+P +++AA++V
Sbjct: 297 AATLLALGLDPAIGMAALGRVTAMRGRGGQLQLSLPDGDLTLIDESYNASPPAVRAALAV 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            ++  P    RRIAVLGDM E+G  +   H  LAE +       V+L G  + AL  ALP
Sbjct: 357 FAETRPAAGARRIAVLGDMLELGATAPEAHRGLAEAVVAAKPDAVFLVGPEMAALAAALP 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++   ++++ + L   + +++  GDVV+VK S       +++ L  
Sbjct: 417 AALVAGHADSSEALAATVAAAVAPGDVVLVKGSLGMRMKAIVSALEA 463


>gi|322412132|gb|EFY03040.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 455

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 212/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    +N I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +    D+         P   V+D L A   LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVAIFSEKDLPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + R
Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDSYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  +          E+  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
           + +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L         
Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 403 EGHVQFFRKNQQADQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNRLVE 454


>gi|126172650|ref|YP_001048799.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS155]
 gi|125995855|gb|ABN59930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella baltica OS155]
          Length = 460

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 227/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGMFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       ++ D      K  ++  +  +    G+S +VV    G H   N L
Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L  ++    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLNLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                   + +++  L   +   +    G V V+VK S S    R+++ L
Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|227528895|ref|ZP_03958944.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227351169|gb|EEJ41460.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 460

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 214/470 (45%), Gaps = 19/470 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI   + I       +  ++ DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAIGAENNIEQWKDVEITSVAFDSRQLDSGALFIPLQGAQ-DGHQYVESAFAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D   +      P+  VDD L +L +L+     +    ++A+TGS GKTTTK
Sbjct: 62  GAVATLWASDHDVTTTE-DQPILVVDDPLESLQQLSKYYLHKINPIVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M    LS+         ++NN IGVP+TL  M    +  + E+GM   G++ FL+ LV 
Sbjct: 121 DMTASILSTQLNVTKTHANFNNEIGVPVTLLNMESSTEVVVVEMGMDRPGQLDFLSKLVS 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  AH+  F   ++IA AK EI  GL++ GT   N D+     L  +  A  
Sbjct: 181 PDFAVITMIGEAHIEFFGTRDKIADAKMEIVHGLKEDGTFIFNGDEP----LLQERAANV 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+    DF      Q  E S      +    E     +G +   N L  + + 
Sbjct: 237 EQRKVTFGRQLTDDFYATSVNQ-HETSIDFKVNEWPDEEFTIPMVGEYNVNNALAAIAVG 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L        KAL      E    R           ++ + YN+NP + K  +  + ++
Sbjct: 296 KQLHITPAHIKKALKN---VELTENRAEWVNGAQGERILSDVYNSNPTAAKQVLKTIEEL 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G+RIAVLGDM E+G+ S   H  LA  +    I  V+L G  +  L+DAL +  +
Sbjct: 353 P--TTGKRIAVLGDMLELGDASARLHASLAANIDPKKIEEVYLVGSEMENLQDALEKQGY 410

Query: 424 ----VHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +H+  T  +D L + +Q+++   D+V++K+S+     +++  L  +
Sbjct: 411 PASAIHHYSTAELDKLVVDLQATISADDLVLLKASHGIHLEKVLAELTTK 460


>gi|317500747|ref|ZP_07958964.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089775|ref|ZP_08338669.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897840|gb|EFV19894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403658|gb|EGG83213.1| hypothetical protein HMPREF1025_02252 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 473

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 127/485 (26%), Positives = 193/485 (39%), Gaps = 38/485 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+ + IDSR       F AI+G   DGH FI   ++
Sbjct: 4   MSLQEIAAACGGTYYGGSEFLPREVSSVVIDSRKAEKDSLFIAIRGARVDGHSFIPKVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   V   D    +G +      V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCAVSEED----LGDVPYSYIKVASCEQALKDIAEHYRRSLDIKVVGISGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS         G++NN IG+PLT+  +  + +  + E+G+S   E+  L  + 
Sbjct: 120 KEMIASVLSQKYSVLKTEGNFNNEIGLPLTVFNLRKEHEIAVLEMGISGFEEMTRLAKVA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I V+T I  AH+ N    + I  AK E+F  + + GTI LN DD     L+  S   
Sbjct: 180 RPDICVLTNIGVAHMENLGSRDGILKAKTEMFAYMNENGTIILNGDDD---KLRGYSPEN 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  +Y                +    +  +      S     +  G HM  N L    +
Sbjct: 237 GITPVYFGLDESCGFHAENISGKGLNGTDAQFFTPNSSFTAHINIPGAHMVYNALAATAV 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L          +    P  GR    R       FT+ID+ YNANP SMKA++ VL+ 
Sbjct: 297 GYALGMTDREICAGIEANVPIAGRNNLIR----APHFTIIDDCYNANPTSMKASLDVLAF 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
                     A+LGDM E+GE  +  H ++        I  +   G  + +  D      
Sbjct: 353 ADTRKA----AILGDMFELGENEKQMHREVGIHAVRKGIDVLICIGSLMKSAADGALEYL 408

Query: 421 -------------------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                                 + +  T        +  L +GD V+VK+S+   F  ++
Sbjct: 409 EQQKNAEHTEETPSSSAHFPTQICHFATKADFLREAKELLKEGDTVLVKASHGMEFPEIV 468

Query: 462 NLLLE 466
             L +
Sbjct: 469 EFLQQ 473


>gi|188532898|ref|YP_001906695.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
 gi|188027940|emb|CAO95797.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 453

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 208/469 (44%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L +   G   G    G +  ++ D+R       F AIKG  +D HDF+  A
Sbjct: 1   MITL-TLQQLAEITGGTLYG--SDGAIAEVTTDTRKATAGNLFIAIKGERFDAHDFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  G   ++V+  +      + +    V D   AL +LA   R RS+A I+A+TGS GKT
Sbjct: 58  VTAGCSGLLVSQRL-----PVEVSQVVVADTRIALGQLAAWVRQRSEARIVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +T    G+ NN IGVPLTL R+     + + ELG +H  EI + T 
Sbjct: 113 SVKEMTAAILRQCGETLYTAGNLNNDIGVPLTLLRLKPQHQYAVIELGANHQDEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   ++  H
Sbjct: 173 LVRPETALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPLNGTAIINSDSNDWPHWQSALH 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S  +  ++DF        ++ +   +      ++V     G H   N L   
Sbjct: 233 GKTVWR-FSPDRQADSDFYASGVTLSAQGTHFTLHSPQGEVDVTLPLPGRHNIANALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      + +     L+D+SYNAN  SM AA  VL
Sbjct: 292 ALALSVGAPLSAVCQGLSTLKAVPGRLFPLALSAD---KLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ ++GDM EMG  +   H  +   +    I  V  +G     + DA   
Sbjct: 349 AEMP----GYRVMIVGDMAEMGAEAAECHRQVGNAIRHAAIDKVLSTGSLSHGISDA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           S    +      L       L       ++VK S S    +++ +L E+
Sbjct: 402 SGVGEHFADKTALGARALELLAQHQQITLLVKGSRSASMEKVVQILQEK 450


>gi|188588851|ref|YP_001921590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499132|gb|ACD52268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 453

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 215/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ G
Sbjct: 3   LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +++  +      +    V  V+D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 63  ATVAIIDEVNFKLEELNDKGTVIKVNDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  ++  T+ +NY++     +  K +   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYEND----MLQKVNEDH 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I
Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +  +    +  FT+I++ YNA+P SM    S LS 
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +   R+IAVLGDM E+G+ ++S H  + +         +  +G      K    +  
Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAI-GKADIILTTGEFRDNYKSGFGKG- 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   + L  ++ + + DGDV++VK+S S  F  ++  +  
Sbjct: 410 -AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDIVKKIEA 452


>gi|228939328|ref|ZP_04101920.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228972206|ref|ZP_04132821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228978821|ref|ZP_04139190.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228780897|gb|EEM29106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis Bt407]
 gi|228787519|gb|EEM35483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228820352|gb|EEM66385.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar berliner ATCC 10792]
          Length = 460

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 209/461 (45%), Gaps = 20/461 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64
            + L + + G  +        + G+ IDS+ I     F  I      DGHD++  A++KG
Sbjct: 12  LNKLEEIVNGEGLQESFHYIEMQGVCIDSKKITKGNLFVPII--RVKDGHDYVKEAMEKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             IP+  VDD L AL K+A   R  S   +I ITGS GKT  K+
Sbjct: 70  AAASLWKKSYGD--PPKGIPIIFVDDTLLALQKIARYYRKTSNVKVIGITGSNGKTMVKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  LS+  + +   G+ N+ IG+PLT+  M  D +F I E+GMS  G+IR L  + +P
Sbjct: 128 IISTILSTTYRVHKTKGNLNSQIGLPLTILEMKQDTEFLILEMGMSETGQIRNLAQIAQP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L +++  +  
Sbjct: 188 DVAIITMIGQSHLETLGSREEIAKAKFEIVDGLNDGGLFLYNGDEP----LLSQNINMLG 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               SFG     D      +        ++       +V  HG        + + +    
Sbjct: 244 IEGKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV---- 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                     K             R++    +  FT+I++++NA+P+SMKAAI  L +++
Sbjct: 300 -GQFYKVPIEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLN 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            + +   I V+GDM E+G+ ++++H ++ E+L+  +I +V+  G     + +   ++   
Sbjct: 359 AYKKK--IIVIGDMLELGKKAETYHREIGEMLNEESIQYVFTYGELAKIVAEEARKNYHT 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +   +    +   +   +   DVV++K S       ++ 
Sbjct: 417 GKIKSFDNKAKIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 457


>gi|324326232|gb|ADY21492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 451

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 212/463 (45%), Gaps = 18/463 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + + G  +        ++G+ IDS+++     F  I     +GH+++  A+  
Sbjct: 1   MNLKKLEEVVNGEGLQESFHLIEIHGVCIDSKNMKEGNLFVPIIRMK-NGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERDTEFLILEMGMSEKGQIRNLSRIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  +HL      EEIA AK EI +GL   G    N D+     L +++  + 
Sbjct: 178 PDVAVITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP----LLSQNINML 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                SFG     D      +        ++       ++  HG       N+L  +  +
Sbjct: 234 SIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNNTKIQYDIPLHGKH-----NILNAIVGI 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++      +  K             R++    +  FT+I++++NA+P+SMKAAI  L ++
Sbjct: 289 AVGQFYKVSTEKIQEALQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + + +     V+GDM E+G+  +++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 349 NAYKKKM--IVIGDMLELGKKGETYHREIGKMLNEKSIQYVFTYGELAKIVAEEARKNYD 406

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              V   +    +   +   +   DVV++K S       ++  
Sbjct: 407 AGKVQSFDNKAEIAEEVLKIITQNDVVLLKGSRGMALEEIVQK 449


>gi|304411647|ref|ZP_07393259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|307306301|ref|ZP_07586046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
 gi|304349835|gb|EFM14241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS183]
 gi|306911174|gb|EFN41601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica BA175]
          Length = 460

 Score =  257 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       ++ D      K  ++  +  +    G+S +VV    G H   N L
Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                   + +++  L   +   +    G V V+VK S S    R+++ L
Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|228927264|ref|ZP_04090326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
 gi|228832411|gb|EEM77986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pondicheriensis BGSC
           4BA1]
          Length = 460

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 119/464 (25%), Positives = 212/464 (45%), Gaps = 20/464 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS+++     F  I      DGHD++  A+ 
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + 
Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++++  
Sbjct: 186 QPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKT 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 +FG+    D      +        ++       +V  HG        + + +G 
Sbjct: 242 SSVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVGQ 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S +  +                   R++    +  FT+I++++NA+P+SMKAAI  L +
Sbjct: 302 FSKVPTEKIQEA-----LQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQK 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           ++ + +   I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++ 
Sbjct: 357 LNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNY 414

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               V   +    +   +   +   DVV++K S       ++  
Sbjct: 415 HIGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEEIVQK 458


>gi|157963626|ref|YP_001503660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
 gi|157848626|gb|ABV89125.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           pealeana ATCC 700345]
          Length = 459

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 214/468 (45%), Gaps = 24/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G  IG      ++ +S DSR++  +  F A+KG ++DGH+F   AV  GA
Sbjct: 5   SLAELATRLNGQLIGD--DLPIDSVSSDSRAVDSKTLFVALKGDNFDGHNFAQAAVDAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V  ++      +      V +   A+ ++    R +   T +A+TGS GKT+ KEM
Sbjct: 63  NALLVEREL-----PIDAAQIVVANSQRAMGEIGAYVREQLAPTCVALTGSNGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +     G++NN IGVPLTL R+    +FG+FELG +H GEI + + LV+P 
Sbjct: 118 IATILSQQHRVLYTAGNFNNEIGVPLTLLRLKQGDEFGVFELGANHAGEIDYTSGLVKPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +A AHL  F  +E +A AK+EIF  +   GT  +N DD+F +++   S  +   
Sbjct: 178 VAMVNNVASAHLEGFGSLEGVAKAKSEIFNHVTVGGTAVINADDAFADVMLQASSHVKQL 237

Query: 246 TIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 ++                 +    +    +   V     G H   N L    I 
Sbjct: 238 CFGVKNEASRDLDVFATDLIADSYGRYAFSLCYGAEVHRVELPLAGRHQVSNALAATSIC 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +    + LS   P +GR          G  T+ID+SYNANPAS+ AAI  L +I
Sbjct: 298 LALGLSLAHICQGLSQLKPVKGRMLP----SVLGRVTVIDDSYNANPASVGAAIDWLQEI 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  VLGD+ E+G+ +   H +L  +     ++ ++  G        A      
Sbjct: 354 K----GNRCLVLGDLGELGDNAALLHRELGALAKAKGVNSLFCVGTLSEGASHAFGSK-- 407

Query: 424 VHYSETMDGLFLFIQSSLVD---GDVVVVKSSNSCGFYRLINLLLEEF 468
             + + +D L   +   + +      V+VK S S    R++  L   F
Sbjct: 408 --HYQDIDDLVAGLIQYINELPAEITVLVKGSRSARMERVVEALTTAF 453


>gi|332305221|ref|YP_004433072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172550|gb|AEE21804.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 471

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 144/474 (30%), Positives = 219/474 (46%), Gaps = 26/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +   + Q +QG  I     I     + G+S D+R I P + F A+ GP++DGH F
Sbjct: 1   MIPV-SLTWIAQQVQGELIRSEKSIAANAIIQGVSTDTRQINPDDLFIALSGPNFDGHKF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A Q GA  V+V+  +        +    V D   AL +L  A +       +AITGS
Sbjct: 60  IDTAAQGGAVAVIVSRKV-----DTELAQILVSDTKEALGRLGQAIKREVAPKTVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM+   LS   K  A  G++NN IGVPLTL R+  D +F + ELG +HLGEI 
Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEADHEFAVVELGANHLGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P +A I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+    
Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            K   L      +F     AD+  +             +      + +     G H   N
Sbjct: 235 GKYEHL---RNQAFSTKDEADYYAQDVVLGLNGCADFLMVTPLGKVSISLPLPGLHNVSN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L++  +   + A++      L       GR +  + +       ++D++YNAN AS+ A
Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVK---VLDDTYNANVASVNA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI +L   +    GR++ VLGDM E+GE ++ +H  + E      I  ++  G    +  
Sbjct: 349 AIDLLGSFA----GRKVLVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLLLE 466
           D   +S   ++    D L   +  +L     D+ ++VK S S     ++  L  
Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAENLTTEKRDISILVKGSRSARMELVVEALEA 456


>gi|197105789|ref|YP_002131166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479209|gb|ACG78737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Phenylobacterium zucineum HLK1]
          Length = 465

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 180/456 (39%), Positives = 252/456 (55%), Gaps = 15/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G   G        G+SID+R+I P + F A+ G   DGH+F+  A +
Sbjct: 4   PLWTAEEIAAATGGKLAGQA--FRAGGVSIDTRTIQPGDLFVALAGVR-DGHEFVEQAFE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
           KGA  V+ +  +         P   V D L AL KL  AAR R  +A   A+TGSVGKT+
Sbjct: 61  KGAAGVIASRQVFG-------PAVMVPDTLHALEKLGAAARERAPQARRGAVTGSVGKTS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             + +   L+     ++ + SYNNHIGVPLTLARMP      +FE+GM+H  EIR L+ +
Sbjct: 114 VTQAIMAGLTLAGPAHSSVKSYNNHIGVPLTLARMPRGTARAVFEIGMNHADEIRPLSRM 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           VRPH  VITT+ P H  NF   E  +A AKAEIFEGLE  G   LN D+ +F+LLK ++ 
Sbjct: 174 VRPHAVVITTVGPVHTENFPDGEAGVARAKAEIFEGLEPGGVAVLNADNRWFDLLKGEAE 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G  T+ +FG  +  D +L  ++  +  + ++ +L GK+++      G H   N +  L
Sbjct: 234 RAGA-TVRTFGTGEACDARLIDFQVPAGHAVVQARLHGKALDFPILQTGLHWGLNSMAVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D+D  + AL  F P  GRG   +     G FTLIDESYNANP SM +AI+ L
Sbjct: 293 LMLEALGVDLDDGLAALGSFEPLAGRGAEAQVRKGAGAFTLIDESYNANPISMASAIATL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI  L DM E+G  +++FH  LAE L    I  V+ +G  + +L DALP 
Sbjct: 353 G--ARETAGRRIVALTDMLELGPEAEAFHRGLAEPLEAAAIDLVFCAGPLMKSLWDALPP 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+E+   L   +  ++  GDVV+VK SN   
Sbjct: 411 TRRGGYAESAAELAPQVVQAVEPGDVVMVKGSNGSK 446


>gi|206975323|ref|ZP_03236237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
 gi|206746744|gb|EDZ58137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus H3081.97]
          Length = 460

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPII-RMNDGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L ++     
Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                SFG     D      +        ++       +V  HG        + + +   
Sbjct: 243 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                   +  K             R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 300 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + + +     V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              V   +    +   +   +   DVV++K S       ++  
Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 458


>gi|114566359|ref|YP_753513.1| murein precusor biosynthesis bifunctional protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337294|gb|ABI68142.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 466

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 127/459 (27%), Positives = 211/459 (45%), Gaps = 13/459 (2%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ +I+G  +    +  VNG+ IDSR + P   FFA KG   DGHDF+  A + GA  V+
Sbjct: 8   VVDSIKGKLLAGNEKTIVNGVEIDSRRVKPGYLFFAFKGESSDGHDFLEDAWKNGAAAVI 67

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+     +       +  V+D L AL  LA A R      ++A+TGSVGKT+TK++L + 
Sbjct: 68  VSRGDCLTKAGPGKSLILVNDTLDALQDLAAAYRRSFNIPVVAVTGSVGKTSTKDILALC 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S  KT    G+YNN IG+PLTL ++       + E+ M   GE+  L  + +P  A+I
Sbjct: 128 LQSRFKTLKTSGNYNNEIGLPLTLLQLDKTHQVAVLEMAMRGQGELLQLATIAQPSSALI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           + +   HL     +E IA AKAE+   L       +N D      L  ++        Y 
Sbjct: 188 SNVEKVHLETLGSLENIARAKAEVMATLGAGDFALINGDSP----LLEEAVRPYAAKKYR 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG SK+ DF++ +    ++   + +   G+S ++         A N +    +  +L   
Sbjct: 244 FGYSKSCDFRIEETIIKNQGIEIRLICLGQSEKLFLPLPSRRWAMNAVAAAAMAFLLGVP 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++    +L  F+P   R              +I+++YNANP SM  A+    ++    +G
Sbjct: 304 LEEIKSSLLNFNPGSKR---LEIIPLPDGGKIINDTYNANPLSMINALETSREL--QEKG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH 425
           + +AVLGDM E+G+  Q  H ++        +  +   G    +   A + A      V 
Sbjct: 359 KLVAVLGDMLELGDYEQEGHREVGHHAVKNQVDLLICIGERAAWMAEAARAAGMAGEQVR 418

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +  + +    F++ SL   D ++ K+S       L   +
Sbjct: 419 HFLSKEESIGFLKQSLNSSDTILFKASRGMQLESLAEEI 457


>gi|257081094|ref|ZP_05575455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
 gi|256989124|gb|EEU76426.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus faecalis E1Sol]
          Length = 457

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 230/469 (49%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ NF     IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENFGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           S    G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PTNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|152998948|ref|YP_001364629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
 gi|151363566|gb|ABS06566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS185]
          Length = 460

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       ++ D      K  ++  +  +    G+S +VV    G H   N L
Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKANADGCYRFMLNYLGESCQVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                   + +++  L   +   +    G V V+VK S S    R+++ L
Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|329766887|ref|ZP_08258415.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
 gi|328837612|gb|EGF87237.1| hypothetical protein HMPREF0428_00112 [Gemella haemolysans M341]
          Length = 453

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 206/469 (43%), Gaps = 19/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    DL + +    + I     + GI+IDSR +   + F    G + DGH++I  A
Sbjct: 1   MKYL--VKDLEKILNAKKVNITSDTEITGIAIDSRKVKQGDLFIPFLGENVDGHNYIESA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +   D   S  +    +  V+D   A+  LA        A  IAITGS GKT
Sbjct: 59  FEKGAAASLSLKDDFVSSNN----IIYVNDSYEAIQTLAKHYLDSLNAKTIAITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++T  LS+  K +   G++NN +GVPLT+   P D +  + E+G    G++ FL+ 
Sbjct: 115 TTKDIITSVLSTKYKVHKTQGNFNNELGVPLTILAAPEDSEILVLEMGADGFGQLDFLSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P+  VIT I  +H+  F   E IA AK EI  G++K G    N D    E+L     
Sbjct: 175 LVEPNYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGD----EVLLKSLV 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S G++   D  L  +    ++   ++ +  +                  +  
Sbjct: 231 DSSDFNTTSCGENNYNDIILENYTITRDRIDFKLNISDEQYFTKL----KGKHNLFNIMF 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    +       ++ +  E  G R +    +    +I+++YNA+P SMKA + V+
Sbjct: 287 ATAIASKIGLTNEEIRKAIENTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVV 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLALKDAL 418
           S         +  VLG M E+G    ++H ++ E +S    +I+ V   G     +   +
Sbjct: 347 SSFDDFD--FKTLVLGSMFELGPNEVNYHAEVGEYISNKTNDINLVISVGELAENITKQI 404

Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               I   +  T   +  +++++    +V+++K+S S     +I  + +
Sbjct: 405 KNDKIKTLHFPTTAEVSEYLKNNKHKNEVILLKASRSMKLETIIEEITK 453


>gi|170079286|ref|YP_001735924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
 gi|169886955|gb|ACB00669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. PCC 7002]
          Length = 445

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 112/469 (23%), Positives = 189/469 (40%), Gaps = 30/469 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              L   +  +      Q       G+S D+R + P   F A+ G  +DGHD++  A Q 
Sbjct: 2   LSQLTAILGENLRRSPQQISPEPATGVSTDTRDLQPGNVFVALVGEKFDGHDYVDQAHQA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++ +  +        +P + V+D L A   L    R +    +I ITGSVGKT+TK
Sbjct: 62  GAIALITSRPL-----ETDLPQWIVNDTLRAYQDLGAWWRQQVNIPVIGITGSVGKTSTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L +  K      ++NN IGVP TL  +  D DF + E+ M   GEI  L  + +
Sbjct: 117 ELIAGILGTQGKVLKTEANFNNEIGVPKTLLNLTPDHDFAVIEMAMRGPGEIARLAEIAQ 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+      E IA AK E+ E + K     LN D+       A   +  
Sbjct: 177 PTIGIITNVGTAHIGRLGSREAIAKAKCELLEFMPKDSVAMLNADNELLMATAATVWSGE 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             +          ++      + ++Q +        +                       
Sbjct: 237 TLSYGFSQGDLTGEYIAPDQVKVADQVFPVPLAGQHNALNYL----------------AA 280

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +   +    + L+          R +  +      L+DE+YNA   SM   ++ L  +
Sbjct: 281 LGVMQVLGFGWQGLTTEISLAMPKGRSQRIVLPNDIVLLDETYNAGLESM---LAALDLL 337

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                 R IAVLG M E+GE S++ H  + E      +  +++        A+ D     
Sbjct: 338 KQTPGDRHIAVLGTMKELGEFSEALHTQVGEKAQTLGLDQLYVLVDDPEAQAIADGAL-G 396

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +          L   +++++  GD ++ K+SNS G  R++  L + + A
Sbjct: 397 VPSLCFPDHRSLIEHLRANMQPGDRLLFKASNSVGLSRVVEALQQTYSA 445


>gi|187735160|ref|YP_001877272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425212|gb|ACD04491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 457

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 17/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T H +   I G  +        +G +  DSR + P   FFA+ G  +DG+ F   
Sbjct: 1   MISL-TAHGISNVIGGKLVSGPFDRVASGGVCTDSRHLPPHAVFFALGGEKFDGNLFAPE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  + A  VVV+   V      S  V  V+D L AL KLA   R     T+I +TGS GK
Sbjct: 60  A-SRTAAAVVVSR--VEEGMDPSCAVILVEDTLEALQKLASWWRSELTLTVIGLTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TK++    LS   +T A  G+ NNHIGVPL++ R     +  ++E+GM+H GE+  L 
Sbjct: 117 TSTKDLTASVLSQGFRTIATQGNLNNHIGVPLSILRATPSDEAAVWEMGMNHSGELAPLC 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP I +IT+I  +H+      E IA  K  +   L + G +    D  + ++++  +
Sbjct: 177 EMTRPKIGIITSIGTSHMEYLGSRENIAREKCTLARCLPEDGFMIFPADCDYADMIRQST 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  I      G  +  +    +    +   ++         EV     G HM  N L+ 
Sbjct: 237 RAACIDCGIGAGTVRAENPVSTE----NGTRFILSIPDFCREEVELPVHGRHMVTNALLA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      +     L+      GR    R         ++D++YNANP SM+AA+  
Sbjct: 293 AAAGWAAGLAKEQIASGLNQARLTGGRLHCTRING----ILVVDDTYNANPDSMQAALHT 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           ++ +S    GRR AVLG M E+G  S+  H+ +        +  V   G     + DA+ 
Sbjct: 349 VAGLS--CTGRRFAVLGRMGELGAFSEEGHVLVGRTAEELRLDCVVSVGTDAARITDAIS 406

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            +      +  + +    +++S    GD+V+ K S      +++NL
Sbjct: 407 PNAFTQSLHFGSAEEAAEWLRSHTAPGDIVLFKGSRLARMEQVMNL 452


>gi|281490889|ref|YP_003352869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281374647|gb|ADA64167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 440

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 195/461 (42%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +     ++  +          VDD L A  KLA     ++K  +IA+TGS GKTTTK
Sbjct: 62  GAIISFSEKEVEQA-------HLLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +
Sbjct: 115 DMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AHL +    E IA  K  I  GL        +   + F     K    G
Sbjct: 175 PELAVITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPIINAFIPDNQKIIRFG 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     F             K    +  +  +       +     G + A N ++   + 
Sbjct: 235 LPGEDLFIT-----------KLVEHKEKLTFETNFLDESITIPVPGKYNATNAMLAAFVG 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      KAL      E    R      +    L+ + YNANP +M+  +     I
Sbjct: 284 LHYGLSEAEIKKALKE---VELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAI 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L + +     
Sbjct: 341 PKNENGRKIAVLADMLELGPSAAQLHKEILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKA 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           V Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 400 VSYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440


>gi|325980951|ref|YP_004293353.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
 gi|325530470|gb|ADZ25191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Nitrosomonas
           sp. AL212]
          Length = 466

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 134/474 (28%), Positives = 205/474 (43%), Gaps = 26/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +  Q +     G        G+S DSR++   E F A+ G  +DG  F+ +A +K
Sbjct: 1   MMMVDEAAQVLHVDWSG--SNVRFTGVSTDSRTLKQGELFVALIGERFDGGKFVSNAKEK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   ++  D   +  S   PV  V D    L +LA   R R    +I +TGS GKTTTK
Sbjct: 59  GAVAAMLQKDAEPAGLSGDFPVIRVQDSRLGLGELAAYWRNRFSLPVIGVTGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIG-----------SYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           EM+   L       A I            + NN IGVP  L R+     + + E+GM+HL
Sbjct: 119 EMIAAILRVAASDNAIINDPAERVLATAGNLNNDIGVPQMLLRLRRQHQYAVIEMGMNHL 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI +LT L RP+IAVIT    AH+     +E +A AKAEI  GL+++GT   N DD + 
Sbjct: 179 GEIAYLTRLARPNIAVITNAGAAHIEGLGSVEAVARAKAEILVGLDQSGTAIFNADDRYA 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L +  + A  I       K++ +               ++++L   ++EV     G H 
Sbjct: 239 SLWRECAGAREIIDFGLTEKARVSAVYRLGRLVN----TLQLRLPDATVEVKLQAPGVHN 294

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    +   L    +  +  L  F    GR    +         LID++YNANP S
Sbjct: 295 IYNALAAAAVAWSLGIKKEWIVAGLERFQSVHGR---LQKKCGLHHAVLIDDTYNANPES 351

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +         +    EG++I VLGDM E+G+L+   H  +        +  +   G    
Sbjct: 352 V----RAALAVLAAAEGKKILVLGDMGELGQLAIDLHRTIGRDARKAGLDQLLTLGKLSA 407

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +   +     +  ++D L    +S L D   ++VK S      R++  L +
Sbjct: 408 YAAEEFGKGAR--HFNSIDELLKVAKSLLADDVTLLVKGSRFMQMERVVRQLEQ 459


>gi|163789888|ref|ZP_02184324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
 gi|159874828|gb|EDP68896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Carnobacterium sp. AT7]
          Length = 462

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 132/473 (27%), Positives = 221/473 (46%), Gaps = 18/473 (3%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++  A+   +   +     +  +  D+R +  +  F  + G + DGH FIL 
Sbjct: 1   MISL-TIKEIAAAVGALNDTSMWSDQEIISVDFDTRKLVKESLFVPLIGNN-DGHQFILK 58

Query: 60  AVQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A++ GA   + +     +    +   PV  V+D L AL  LA     +    ++ ITGS 
Sbjct: 59  AIENGARASLWSKSLKDLPFEVAADFPVIQVEDTLKALQDLAKFYLTKVNPKVVGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+M    LSS  + +   G++NNHIG+P+T+  MP+D +  I E+GM+H GEI+ 
Sbjct: 119 GKTTTKDMTDAVLSSQYRVHKTQGNFNNHIGLPITILEMPIDTEVVILEMGMNHAGEIKV 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ L  P +A+IT I  +H+  F     IA AK EI  GL++ G +    ++    LL+ 
Sbjct: 179 LSDLAEPDVAIITMIGESHIEFFGSRAGIADAKMEISSGLKENGVLIYPGEEP---LLQE 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   L  K + +FG +   D           Q+      +   M +    +G +   N L
Sbjct: 236 RVTFLTDKQLKTFGTAAENDLYPLNIDAQMNQTS-FTTNETPDMTISLPVLGTYNVNNAL 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +L   +  +   L+ F   + R       +      +++++YNANP +MKA +
Sbjct: 295 AALMAGIVLGVPIQKSAPKLAKFQLTKNR---TEWLVGINGSRILNDAYNANPTAMKAVL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              S      EG++I +LGDM E+GE S   H+ + E L+   I  V L G  +  L ++
Sbjct: 352 DNFSTF--ENEGKKIVILGDMLELGEHSSELHLSIKESLNPNQIKKVILYGEEMSVLYES 409

Query: 418 LPR---SIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L     + ++ Y     + L    +  +  GD V++KSS       ++  L +
Sbjct: 410 LQETFANDNLFYFTGDKEPLIQLAKEQIEPGDYVLIKSSLGTDLLSVVRALQD 462


>gi|225376499|ref|ZP_03753720.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
 gi|225211671|gb|EEG94025.1| hypothetical protein ROSEINA2194_02141 [Roseburia inulinivorans DSM
           16841]
          Length = 476

 Score =  256 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 133/485 (27%), Positives = 199/485 (41%), Gaps = 35/485 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   +     G  IG        + G  IDSR +     F  ++G   DGH FI    +
Sbjct: 4   MTLEHIAAVCGGTYIGNEADKTREIQGAVIDSRLVEKDYLFIPVRGEKVDGHSFIPSVFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+    +    G    P   V++ L A+ K+A   R      ++ ITGSVGKT+T
Sbjct: 64  KGALAVLSEEKLENPAG----PYILVENTLDAMKKIAADYRRGLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L+         G+ NN IG+PLT+ ++  +    + E+G+S  GE+  L+ + 
Sbjct: 120 KEMIASVLAQKYNVLKTEGNLNNEIGLPLTIFKIREEHQVAVLEMGISEFGEMDRLSTMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------ 236
            P I VIT I   HL N    + I  AK E F  L   G   LN DD      K      
Sbjct: 180 NPDICVITNIGLCHLENLITRDGILKAKTESFAHLTPDGIAVLNGDDDKLCDKKVVNGKP 239

Query: 237 ------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------SMEVV 284
                  K+  +      +   ++   +           +   +    K      +MEV 
Sbjct: 240 AVFYGIEKAAKVAETEEGTKTLAEKTVYATNVEAVDLTGTKAAIHYPSKETGGEVTMEVT 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L    D   + +       GR             T+ID+
Sbjct: 300 IPIAGEHNVYNALAAVSVARELGLTCDEMKRGIESVQTIGGRSNLIHKNG----ITIIDD 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            YNANP SMKA+I VL     +  GR+IAVLGDM E+G   +  H  + E  +   I  +
Sbjct: 356 CYNANPVSMKASIDVL----SNAPGRKIAVLGDMGELGAEEKQLHYMVGEHFAGKGIDAL 411

Query: 405 WLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +  G     +  A+     +  VH+ E    L   +   +  GD V+VK+S+  GF  ++
Sbjct: 412 YCVGTLSQEITKAVRANSSATEVHHYEDKADLIKDLVKEVKSGDTVLVKASHFMGFPEIV 471

Query: 462 NLLLE 466
             L +
Sbjct: 472 KELTK 476


>gi|167768148|ref|ZP_02440201.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|167709672|gb|EDS20251.1| hypothetical protein CLOSS21_02704 [Clostridium sp. SS2/1]
 gi|291560174|emb|CBL38974.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [butyrate-producing bacterium SSC/2]
          Length = 452

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 222/464 (47%), Gaps = 19/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEG- 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +      A   S + P   V D L A+ ++A   R +    II +TGSVGKTTT+EM
Sbjct: 64  GACLTQEHTEA---SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P+
Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +  +H+      + I   K +I  GL + G +FLN D+     +  K      K
Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDND----MIRKHIDYVKK 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               +G +++  ++  K ++   Q+  E         +  + +G H   N L  + I   
Sbjct: 237 PYEFYGFAEDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +      LS F        + +  ++   + LID++YNA+P SMKA++S+LS+   
Sbjct: 297 YDVPMSAIKAQLSTFSG------QRQNIIHVNDYILIDDAYNASPDSMKASLSILSEF-- 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSI 422
              GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G       +       S+
Sbjct: 349 KTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           H     +   L  F+++ L   DVV++K SN      +   L+ 
Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALMA 452


>gi|126735375|ref|ZP_01751121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
 gi|126715930|gb|EBA12795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseobacter sp. CCS2]
          Length = 477

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 170/476 (35%), Positives = 248/476 (52%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  GH      +    G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MTALWTSADAAAATGGH---TTQEWDAQGVSIDTRTIAQGDLFVALKDVR-DGHEFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V      +      P+  V DVL AL  L  AAR R+ A I AITGSVGKT
Sbjct: 57  LDQGAAAALVTH--RPADVPADAPLLIVPDVLAALGDLGRAARARTGAKIAAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L    K +A   SYNNH GVPLTLARMP D D+ + E+GMS+ GEI  L+ 
Sbjct: 115 STKEMLRAVLEKQGKCHAAEASYNNHWGVPLTLARMPADADYAVIEIGMSNPGEITPLSQ 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +PH+A++TT+A AHL++F  +  IA  KA I +GLE  G   LN D     +L+  + 
Sbjct: 175 MTQPHVAMLTTVAAAHLASFDNLAGIAVEKASIMDGLEPGGVAVLNGDIETSGILQDHAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG      FG++   D+ ++  +   + + +     G++        G H A N +  L
Sbjct: 235 KLGA-RQVLFGETAP-DWVVKDVRITDDVTVISASGGGENYLFKLSVPGRHFAMNAVGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF----TLIDESYNANPASMKAA 356
            +   L AD   A   +  + P  GRG R     +         L+D+++NANP S+ AA
Sbjct: 293 AVAEALGADPVAAALDIGAWVPPAGRGTREVIVTDMANDGESLELLDDAFNANPTSLVAA 352

Query: 357 ISVLSQISP------HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+  +P        +GRR+A+LGDM E+G+  Q  H ++A    L ++  V  +G  
Sbjct: 353 LEVLAAATPTDNVGRIVKGRRVAILGDMLELGDAEQEMHREMAGNSHLQSLDLVHCAGPL 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +L L  ALP     H++ET   L L     +  GDVV+VK S       +++ + +
Sbjct: 413 MLHLWQALPEEQRGHWAETAAELVLQAPRLVDAGDVVLVKGSKGSKVSLVVDAIRK 468


>gi|317499631|ref|ZP_07957893.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893106|gb|EFV15326.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 221/464 (47%), Gaps = 19/464 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  D+L+A  G  +   P   ++ +S +S  I P   F  I G   D H FI +A+++G 
Sbjct: 5   TIQDILEATDGTLLCGDPSMKIDHLSTNSMEIGPNTLFVPIIGERVDAHIFIPNALKEG- 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +      A   S + P   V D L A+ ++A   R +    II +TGSVGKTTT+EM
Sbjct: 64  GACLTQEHTEA---SGNAPYIKVPDTLTAMQQIAAYYRNKMSLPIIGVTGSVGKTTTREM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K +  IG+ N+ +GVPLTL  +  + + G+ E+GMS  G+I  L +++ P+
Sbjct: 121 IAHVLKGKYKVFETIGNQNSQVGVPLTLDHLTSEDEIGVLEMGMSEKGQITTLGNIIHPN 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +  +H+      + I   K +I  GL + G +FLN D+     +  K      K
Sbjct: 181 VGVVTNVGVSHIEMMGSRDNICIEKLDIQNGLPEDGVLFLNGDND----MIRKHIDYVKK 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               +G + +  ++  K ++   Q+  E         +  + +G H   N L  + I   
Sbjct: 237 PYEFYGFADDCTYRAEKIREKGGQTLFEFHYGDMKEPITLNVLGKHNVSNALAAIAIGLR 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +      LS F        + +  ++   + LID++YNA+P SMKA++S+LS+   
Sbjct: 297 YDVPMSAIKAQLSTFSG------QRQNIIHVNDYILIDDAYNASPDSMKASLSILSEF-- 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSI 422
              GR+IAVL DM E+G  S  +H ++   ++   ++ ++++G       +       S+
Sbjct: 349 KTRGRKIAVLSDMLELGPDSPEYHKEVGRFIATTKVTDLFITGELSRHYIEEAWKENPSL 408

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           H     +   L  F+++ L   DVV++K SN      +   L+ 
Sbjct: 409 HTRAFSSNGELIAFLETYLKKNDVVLIKGSNGMNLKEVSKALMA 452


>gi|238916549|ref|YP_002930066.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
 gi|238871909|gb|ACR71619.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Eubacterium eligens ATCC 27750]
          Length = 469

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 136/478 (28%), Positives = 211/478 (44%), Gaps = 26/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T   + QA+ G   G        +  I+IDSR +A    F AIKG   DGHDFI 
Sbjct: 1   MKGM-TLRAMTQAVNGIYHGNGEDYDKEITAITIDSRKVAEGGLFIAIKGERSDGHDFIG 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              +KGA  V+   ++     S       V+  L AL  LA+  R      ++ ITGSVG
Sbjct: 60  QCFEKGAACVISEKELPDEEHS----YIQVESSLQALKDLALLYRNNLDVKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE ++  LS   +    +G++NN IG+PLT+ R+  D +  + E+G+S  GE+  L
Sbjct: 116 KTSTKETISSVLSEKYRVLKTLGNFNNEIGLPLTVFRLTEDDEVAVLEMGISDFGEMDRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P I VIT I   HL N    + I  AK EIF  +   G + LN DD     +   
Sbjct: 176 SKIAQPDICVITNIGLCHLENLGTRDGILKAKTEIFNHMNPDGIVILNGDDDKLSTISQV 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKSMEVVHHGIGYHMAQNM 296
                +    S      AD         +  +    +   +  + ++     G+HM  N 
Sbjct: 236 HGKRPLVFGISNKDGVYADNIKSLGLDGTSFTIHGLDTADKYSTFDMTVPVPGHHMVYNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    + S+L        + +       GR    +       FT+ID+ YNANP SMKA+
Sbjct: 296 MAAALVGSVLGLSSLEIERGVRNLKTIAGRNNIIKENG----FTIIDDCYNANPVSMKAS 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL        GR++A+LG M E+GE  +  H D+   L   +I  +  +G     +  
Sbjct: 352 LDVLDTAI----GRKVAILGSMFELGENEKQMHYDVGMYLGTKDIDVLITAGDLAAQIAA 407

Query: 417 A---------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                           VH  ET D +   I   L  GD +++K+S+   F +++  + 
Sbjct: 408 GTRAYIDTNYNAHGCEVHDFETRDDMLKSIGHILKTGDNILIKASHGMEFSKVVEAVK 465


>gi|24375708|ref|NP_719751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
 gi|24350642|gb|AAN57195.1|AE015855_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           oneidensis MR-1]
          Length = 460

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 147/468 (31%), Positives = 229/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L Q +  H +G      V  +S DSR I P   F A+KG  +DGHDF   A
Sbjct: 1   MIPI-SLKALSQHLGAHRVGD--DVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAIALLVEREL-----AFDIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+  +  +G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRPH+A++  +  AHL  F     +A AK+EI+  L++ GT  +N DD+F +++  KAK
Sbjct: 173 LVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAK 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  S+  +  +    G+S EVV    G H   N L
Sbjct: 233 HYKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L  ++    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTGTLTQHTSHA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHDSVATLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|171913323|ref|ZP_02928793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 460

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 200/467 (42%), Gaps = 15/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +     G  +   P      ++ DSR I P E F A+ G  +D HDF+   
Sbjct: 1   MKAL-TLETIASYSGGRLVHGDPAVTCTSVNTDSRKIQPGELFVALVGEKFDAHDFVPQV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q GA  V+V+  +  ++ +L   V  V D L AL +LA A R      +I ITGS GKT
Sbjct: 60  AQAGAAAVIVSR-LPENVEALGCGVIEVPDTLLALQQLARAYRELLNPLVIGITGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+++   L    +  A +G++NNHIG+PLT+ RM    +  + E+GM+H GEI  L  
Sbjct: 119 STKDLVAAVLRKKYQVCATLGNFNNHIGLPLTILRMEEGDNCAVLEMGMNHHGEIAVLAG 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP  A+IT I  AH+      E IA  K  +   +   G + LN +D F   + A+SH
Sbjct: 179 IARPDAAIITNIGVAHIEYMGSREGIAQEKGTLAAAVPHGGVVVLNANDDFSSSIAARSH 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +      G                   +         + V     G HM  N  +  
Sbjct: 239 ARVVLAGVGEGDVVA----TLTESGARGSFFSLNFDGRVVVAVHLPVPGEHMVGNAALAA 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +             A      +    K           T++D+SYNANP SM+A +  L
Sbjct: 295 AVGWHFGVVPQDIAAA----LGEVQLTKGRVQVKFWRGVTVLDDSYNANPDSMRAGLKTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDA 417
           + +     GRR+AVLG M E+G  ++S H ++    +   +  V+  G     +    + 
Sbjct: 351 AAL--QIPGRRVAVLGRMGELGPHAESSHREVGGYAAELGVDAVFSVGEEAALITSQAEK 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              S       +   +   +   L +GD V++K S S    +++  L
Sbjct: 409 SGGSGDYRNFSSHAAVAACLTEWLHEGDAVLLKGSRSAAMEQVLTHL 455


>gi|120597217|ref|YP_961791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           sp. W3-18-1]
 gi|146291590|ref|YP_001182014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens CN-32]
 gi|120557310|gb|ABM23237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella sp. W3-18-1]
 gi|145563280|gb|ABP74215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella putrefaciens CN-32]
          Length = 460

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 226/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +  H +G      +  +S DSR +     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +L+IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----ALNIPQLIVTDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKYQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F +++  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  ++  +  +    G+S +V     G H   N L
Sbjct: 233 PYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLNYLGESCDVKLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQ----LGRIRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHESVAVLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|289548049|ref|YP_003473037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
 gi|289181666|gb|ADC88910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermocrinis albus
           DSM 14484]
          Length = 441

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 144/456 (31%), Positives = 217/456 (47%), Gaps = 29/456 (6%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
              G  IG      V     DSR +   + F A+KG  +DGH F+  A ++GA  VVV  
Sbjct: 9   ITGGRLIG--ENCEVKRFVTDSRQVEEGDVFVALKGQKHDGHSFVEEAFRRGAVGVVVER 66

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++    G  +     V+D L AL  +A+  R   K  ++ I GS GKTTTKE++   LS+
Sbjct: 67  EVPVKEGKFA---LVVEDSLKALRSIALFKRNNFKGKVVGIAGSAGKTTTKELVAHLLSA 123

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           + K      +YN+ IGVPL++A  P D DF + E+G S  G++  LT LV PH+ VIT+I
Sbjct: 124 VGKVCKTPKNYNSQIGVPLSVANFPEDCDFWVIEMGASAKGDVAKLTQLVIPHVRVITSI 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL  F  ++++     EI EG+ +     L             +H   ++    FG+
Sbjct: 184 GEEHLETFGCLDDVILGNGEILEGMREDHVAVLPSYV---------AHCYRVERAVLFGE 234

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                 Q    K   E     V+ +    E+        + +N+L +LG++  L  D  T
Sbjct: 235 GTPLSAQ--DLKLTVEGVRFVVKGK----EIFLPVPSLALVENILCSLGVMEALGVDWTT 288

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +  L+ F P EGR       L+    T+ID+SYNANP S+K AI  LS +    EG RI
Sbjct: 289 LLDKLTTFRPVEGRF----RTLSVMGATIIDDSYNANPLSVKKAIESLSLM----EGHRI 340

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSETMD 431
           AVLGDM E+GE ++  H D+    +   I      G+ +  A  +A    +   Y E   
Sbjct: 341 AVLGDMLELGEKAEELHRDVGRWCAEKRIDECIFYGYWMRYAFHEAKRLGVSTIYLEDKG 400

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   ++  L +G +++VK S       +I  LL+E
Sbjct: 401 EVVQHLRKKLREGTIILVKGSRGMKMEEVITQLLQE 436


>gi|89099477|ref|ZP_01172353.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
 gi|89085863|gb|EAR64988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacillus sp.
           NRRL B-14911]
          Length = 457

 Score =  256 bits (653), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 204/464 (43%), Gaps = 15/464 (3%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   +   I   +         + G+SI+SR++ P   F   KG H DGH F+  A++KG
Sbjct: 5   TIAQIAGMIPVLNDHSAFSDISIKGVSINSRTMEPGNLFVPFKGEHTDGHRFVEDALRKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+      L +P+  V+D L A+ +L+ A R      +  ITGS GKTT K+
Sbjct: 65  AAAALWQQDV--PNPPLHLPILVVEDTLKAVQQLSEAYRNELDIKVAGITGSNGKTTVKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS   K     G+YNNH+G+PLTL  +  D +  + E+GMS  GEI FLT L RP
Sbjct: 123 MTARLLSLRYKVQKTEGNYNNHLGLPLTLLSLEEDTEVAVLEMGMSGFGEIEFLTKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I  +HL +      IA AK EI EGL+  G I  + D+   +     +   G 
Sbjct: 183 DVVMITNIGESHLQDLGSRAGIAKAKLEIIEGLKDDGMIIYHGDEPLLKD--RLNGYSGP 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + SFGK ++      +  Q  + S    Q     ME     +G H   N L  +    
Sbjct: 241 AKVRSFGKGQSNSIYPVRIDQEEKGSV--FQANLSDMEYHLPVLGVHNVMNALCAMEAAH 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   +  +     +    R   +       +I+++YNA+P SM+AAI ++S++S
Sbjct: 299 FLGIPYEQMNEGFA---SLKLTAMRMELSEGCKGEKVINDAYNASPTSMRAAIDLVSELS 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            +    ++ VL DM E+G+    FH ++ + +    I +V   G     + +        
Sbjct: 356 GYS--IKVLVLADMLELGDDEVRFHREIGQAIDPEKIDYVLTFGSLGRVIAEGAQEVFSE 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V        L   +QS      +V+ K S           L 
Sbjct: 414 ERVFAFSEKGPLIEKLQSLTNAETIVLFKGSRGMKLEEAAEALK 457


>gi|330828041|ref|YP_004390993.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
 gi|328803177|gb|AEB48376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromonas veronii B565]
          Length = 451

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 203/466 (43%), Gaps = 27/466 (5%)

Query: 4   LWTF--HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T    +L Q +    IG   +  V  +S D+R++     F A++G  +D HDF   AV
Sbjct: 1   MMTLRLAELAQVLDARLIGDDGEITV--VSTDTRTLGAGALFVALRGERFDAHDFCEQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           Q GA  ++V  ++      L+IP   V D L  L +L    R R    ++AITGS GKTT
Sbjct: 59  QAGASALLVEREL-----PLAIPQLVVTDSLKGLGRLGKLVRERINPKVLAITGSCGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM T  L +  +  A  G++NN +GVPLTL R+     F + ELG +H GEI + T L
Sbjct: 114 VKEMATAILRNEGEVLATAGNFNNEVGVPLTLLRLEPQHKFAVMELGANHPGEIAWTTSL 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A+I  +A AHL  F  +E +  AK+EIFEGL + GT  +N D+ F+   + +   
Sbjct: 174 AKPDAAIINNVAAAHLEGFGSLEGVFHAKSEIFEGLSEGGTAIVNADNEFWPKWRER--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            GI+  +S                    +   +      + +     G H   N L    
Sbjct: 231 -GIQCAFSIEGQSQPFHARNLVLNERGCAEFVMVTPQGELSLTLAIPGRHNVANALAAAA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L A + +    L    P +GR    R        TL+D++YNA+  S+ A I  L+
Sbjct: 290 GCLALGASLGSVKAGLEQMAPVKGRFCVQRWGG----LTLVDDTYNASVESVLAGIDALT 345

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +     G ++ V GDM E+GE S   H  +        +  V   G       DA    
Sbjct: 346 AM----GGFKVLVFGDMRELGEESAEQHARVGRHARERGLDAVLTVGEESRHTADAAA-- 399

Query: 422 IHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLL 465
               + +    LF  +   +       ++VK +       ++ ++ 
Sbjct: 400 --GRHFDNKASLFEVLAQMINTHQEISILVKGARGSRMEDIVEMVK 443


>gi|251778580|ref|ZP_04821500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082895|gb|EES48785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 453

 Score =  255 bits (652), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 117/464 (25%), Positives = 214/464 (46%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +++L+AI G  +    +G    IS D+R I     F A+KG +++G+++++ A++ G
Sbjct: 3   LTLNEVLKAIDGELLIKNNEGSFEKISTDTRKIDKNSLFIALKGNNFNGNNYVVEAIKAG 62

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +++  +      +    V  V D   AL  LA   R +    ++ ITGS GKT+TK
Sbjct: 63  ATVAIIDEVNFKLEELNDKGTVIKVTDAKIALGALAKYYREKLGIKVVGITGSTGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS     +   G++NN IG+PL +  +    D  + E+G ++  EI  LT++ R
Sbjct: 123 DLVAAFLSGKYSVFKTKGNFNNEIGLPLMIFELDSSYDIAVLEMGTNNFDEIHRLTNIAR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT +  +H+      E I   K  I +  ++  T+ +NY++     +  K +   
Sbjct: 183 PDMAIITNVGVSHIEYLKTRENILKEKFSITDFFKENNTLVINYEND----MLQKVNEDH 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              I   G  K  D      +   E +  + V   G+      + +G H   N L+ + I
Sbjct: 239 EFKIEKIGYDKKYDLYAENIELTEESTSFDAVNSNGERHRFKLNMVGEHNILNALLGIRI 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +     L+ F     R +  +    +  FT+I++ YNA+P SM    S LS 
Sbjct: 299 SENFGITFEEMELGLNNFEATSMRLEFIK----KNNFTIINDCYNASPDSM---KSALSV 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +  +   R+IAVLGDM E+G+ ++S H  + +         +  +G      K    +  
Sbjct: 352 LKTYSGSRKIAVLGDMGELGDHAKSSHEIVGKEAI-GKADIILTTGEFRDNYKSGFGKG- 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   + L  ++ + + DGDV++VK+S S  F  ++  +  
Sbjct: 410 -AVSFNCKEDLQNYLCNLIKDGDVILVKASRSAKFEDVVKKIEA 452


>gi|323463914|gb|ADX76067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 454

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 206/462 (44%), Gaps = 15/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + I            + G++IDSR I   + F   KG + DGH +   A+  GA
Sbjct: 5   TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D        + PV  V++ L AL +LA A       T+IA+TGS GKTTTK+M
Sbjct: 65  GATFFQRDST-LTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   +     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+++ +P 
Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G S   D Q +      E     V         +    G H  +N  + + +  I
Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTIPIL---GEHNMRNATIAIAVGRI 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +   +        +    R +  +      +I+++YNA+P SMKAAI  LS +  
Sbjct: 298 MGLTDEQIQQ---QLTSLKLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              G  I VLGD+ E+GE S+  H  +   L    I  ++  G   +A+ +     ++  
Sbjct: 354 ---GETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  D L  ++ S +    VV+VK+S       ++  L+E
Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452


>gi|160873534|ref|YP_001552850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|160859056|gb|ABX47590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           baltica OS195]
 gi|315265764|gb|ADT92617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS678]
          Length = 460

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 143/470 (30%), Positives = 227/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  + V  R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGVYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTPADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       ++ D      K  ++  +  +    G+S +VV    G H   N L
Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLNYSGESCQVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                   + +++  L   +   +    G V V+VK S S    R+++ L
Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|326791418|ref|YP_004309239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542182|gb|ADZ84041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           lentocellum DSM 5427]
          Length = 456

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 130/463 (28%), Positives = 200/463 (43%), Gaps = 16/463 (3%)

Query: 7   FHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             D++ A+ G  I   + +  +  I+ DSRS      F  +KG  +DGH+FI    +KG 
Sbjct: 5   IQDIISAVGGKCIQEGLIKQPIEVITTDSRSQVTNGLFVPLKGDRFDGHEFIKSVYEKGV 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D V      +     V+D   AL  L    R +    ++ ITGSVGKT+TKEM
Sbjct: 65  IATLTMEDKVIDPRLWT---IKVEDTRQALLDLGHYYRNQFTVPVVGITGSVGKTSTKEM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS     +   G++NN IG+PLTL +M    +  + E+GM+H  EI  L+    P 
Sbjct: 122 VAAVLSGKWHVHKTDGNFNNEIGLPLTLFKMDASHEAAVIEMGMNHFDEIHRLSLAAAPE 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT +  +H+ N    E I  AK EI +GL   G + LN D+     +          
Sbjct: 182 VAVITNVGTSHIENLGSREGILKAKLEILDGLMPGGLLVLNGDNDLLSTVGEL-----PF 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G + + D+         E +   V        +    +G HM  N L  + +   
Sbjct: 237 NKVTYGLNTSNDYYAEAIANEGEYTTAIVTTPQYKCNIRIKALGEHMVYNTLAAIAVAQY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L        K L  + P + R             T+ID++YNA+P SM+AA+ VL     
Sbjct: 297 LGLSKAEIQKGLESYAPAKMRMHLETY---DNQITVIDDTYNASPDSMEAALKVLRDY-- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIH 423
             +GR+IAVLGDM EMGE +   H  +    +   I  V+  G     +           
Sbjct: 352 DTKGRKIAVLGDMFEMGEFAPELHKKVGAFAAEIGIDRVYAVGTLAEYIFKGAKEQEGAP 411

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             Y  T +     +Q  L   D V+ K+S    F  ++  + +
Sbjct: 412 TFYYPTKEAFIEVMQRELQAEDTVLFKASRGMHFEEMLEAVRK 454


>gi|290580902|ref|YP_003485294.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
 gi|254997801|dbj|BAH88402.1| putative D-Ala-D-Ala adding enzyme [Streptococcus mutans NN2025]
          Length = 452

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 210/469 (44%), Gaps = 26/469 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++   +     + +     +N I  DSR I   + F  ++G   DGH+FI  A   
Sbjct: 3   LTLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ +       P   V D L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEKNITS-----DYPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  
Sbjct: 117 DMIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTH 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL  F   E+IA  K +I +G++  G +    D      L  K   + 
Sbjct: 177 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITQGMDGHGILIAPADKIISSFLPEKQKVIR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       AD  +   +    ++++  +      E+     G + A N ++   + 
Sbjct: 237 ----------FGADEDIFVTELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVG 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL+          R           ++ + YNANP +MK  +   S I
Sbjct: 287 KLLNVSEEKIISALAQ---LNLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSSI 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  G++IAVL DM E+G+   + H  +   L    I  ++L G  + AL D + +   
Sbjct: 344 PANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYS 403

Query: 424 V---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           V   +Y    + +D L   IQ  L   D +++K SNS    +++  L +
Sbjct: 404 VGKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECLEK 452


>gi|217971629|ref|YP_002356380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
 gi|217496764|gb|ACK44957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           baltica OS223]
          Length = 460

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 142/470 (30%), Positives = 226/470 (48%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +    +G      +  +S DSR I     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLETLSQHLGTFRVGD--DVTIEDLSSDSRKIGAATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +  IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----AFDIPQLIVPDCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    +FGIFELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQILYTAGNFNNEIGVPLTLLRLTSADEFGIFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F + +  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADFMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       ++ D      K  ++  +  +    G+S +VV    G H   N L
Sbjct: 233 PYKQLSFSQQDGAAKRHIDVIATGHKTNADGCYRFMLSYLGESCQVVLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +    + LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTEIAEGLSQLTPVKGRMQPSQ----LGRVRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGTLSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLL 464
                   + +++  L   +   +    G V V+VK S S    R+++ L
Sbjct: 405 FG----AEHYDSVATLVEKLIKHINQLPGQVTVLVKGSRSAAMERVVDGL 450


>gi|56416916|ref|YP_153990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
 gi|56388148|gb|AAV86735.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           marginale str. St. Maries]
          Length = 463

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+   V +      P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 60  GAVAAVVDEVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+ + ++ S         +     +         +  +     + 
Sbjct: 238 A-RIISFGVGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAA--VG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS +
Sbjct: 295 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|260587559|ref|ZP_05853472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
 gi|260541824|gb|EEX22393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Blautia
           hansenii DSM 20583]
          Length = 454

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 202/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L  A  G  +G   +    V  I  DSR       F  IKG   D HDFI 
Sbjct: 1   MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++K     +   D    +G    P   V   L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD     L   
Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDD---KLVTV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               GIK ++   ++    +      +  +     +    +S  V+    G H   N L 
Sbjct: 233 QETKGIKPVFFGVENHQGIWADEIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +       ++   K +       GR       +    +T+ID+ YNANP SMKA++ 
Sbjct: 293 ATAVGLTYGLTIEEIRKGIESLQSVSGRF----HIIEAPNYTVIDDCYNANPISMKASLD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     + DA 
Sbjct: 349 VLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADAA 404

Query: 419 PR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 405 GEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|331084214|ref|ZP_08333320.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402069|gb|EGG81642.1| hypothetical protein HMPREF0992_02244 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 454

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 199/470 (42%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  +L  A  G  +G   +    V  I  DSR       F  IKG   D HDFI 
Sbjct: 1   MKNL-TLKNLALACNGTYVGPKEMEDKEVTCIFTDSRKAEAGGLFVPIKGARVDAHDFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++K     +   D    +G    P   V   L A+  +A     + +  ++ ITGSVG
Sbjct: 60  QVMEKAVLATLSEKD----LGEKPFPYILVKSSLIAVKDIAEFYLKQLQIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L+    T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLAQKYNTLKTQGNFNNELGLPLTIFRLRDEHEMAVLEMGISDFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP+  VIT I   HL      + I  AK EIF+ L+    I LN DD     ++  
Sbjct: 176 AKIARPNTCVITNIGLCHLEFLKSRDGILKAKTEIFDYLQSDDHIILNGDDDKLVTVQE- 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      FG   +      K K    +     +    +S  V+    G H   N L
Sbjct: 235 ---TKGIKPVFFGVENHQGIWADKIKPEGLKGISCCIHAGEESFSVLIPVPGKHSVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +       ++   K +       GR       +    +T+ID+ YNANP SMKA++
Sbjct: 292 AATAVGLTYGLTIEEIRKGIESLQSVSGRF----HIIEAPNYTVIDDCYNANPISMKASL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR++A+LGDM E+G   +  H ++ +  +   I  +   G     + DA
Sbjct: 348 DVLTD----ALGRKVAILGDMGELGADERKMHKEVGKHAAEKEIDVLLCVGELSKDMADA 403

Query: 418 LPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    V +    + L   +   L  GD V+VK+S+   F  ++  L
Sbjct: 404 AGEVNSKTQVRHFADKEALMKELPELLEKGDTVLVKASHFMEFGEIVEKL 453


>gi|220933945|ref|YP_002512844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995255|gb|ACL71857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 458

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 143/467 (30%), Positives = 207/467 (44%), Gaps = 27/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W+  ++   + G   G        G+S D+RS+   + F A+ GP YDGH F+   
Sbjct: 2   MI--WSLAEIASKVGGELHGG--DTVAEGVSTDTRSLQHGQLFVALTGPTYDGHAFVSD- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A  V+V+      +    +P   VDD   AL +LA A R     T++A+TGS GKT
Sbjct: 57  -DLPAAGVMVSR-----LLPTRLPQVLVDDTRLALGRLARAWRESLPVTVLALTGSNGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML+        T A  G+ NN IGVPLTL  M  +  + + E+G +H GEI +LT 
Sbjct: 111 TVKEMLSAIAREHAPTLATRGNLNNDIGVPLTLLEMARNHRYAVVEMGANHHGEIAYLTS 170

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A+IT   PAHL  F  IE ++ AK EI+ GL   G   +N DD + +       
Sbjct: 171 LARPDVALITNAGPAHLEGFGSIEGVSRAKGEIYSGLGPDGVAVINADDIYADYW---YG 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + + SFG     D       +      + + + G+   +     G H A N L   
Sbjct: 228 LNPGRRVISFGL----DHVAEVSGEWQAPGSLRLHMNGRVHALELAFPGRHNALNALAAA 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +  ++ L+  HP  GR         +G   L+D+SYNANPAS +AA+ VL
Sbjct: 284 AAALGAEIPEEAILRGLARVHPVSGRLV---AVPGRGGALLLDDSYNANPASTRAALEVL 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G R  VLGDM E+G+  ++ H ++        I H    G        A   
Sbjct: 341 SGH----GGERCMVLGDMGELGDEGETLHAEIGARARELGIEHFHAVGPLSAHAVRAFGE 396

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +      L   ++  L  G  V+VK S S    R++  L  +
Sbjct: 397 G--AQHHPDQAALIEALRPMLHAGMTVLVKGSRSARMERVVQALQAD 441


>gi|210622331|ref|ZP_03293100.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
 gi|210154319|gb|EEA85325.1| hypothetical protein CLOHIR_01048 [Clostridium hiranonis DSM 13275]
          Length = 461

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 213/466 (45%), Gaps = 17/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++++A +G+         V  I IDSR      AF AI G + D H +I  A   G
Sbjct: 4   LTVKEIVEASKGNLKNGEGSESVKAIVIDSRLAKEDTAFVAIVGENNDAHKYIGSAYDLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             + +VN      I S  + +  VDD   AL  +    + +     I ITGSVGKTTT++
Sbjct: 64  CRVFIVNKGKDIDIKS-DMNIIEVDDTSKALGDIGHYYKKKFDILFIGITGSVGKTTTRD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  ALSS + T     ++NNH GVPLTL  +    +  + E+GMS  GEI +L ++V P
Sbjct: 123 MVYAALSSERATLKNEKNFNNHFGVPLTLFNLDSSYECAVIEMGMSGFGEIEYLANMVNP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVI+ I  +H+ N    E I  AK EI  G  K  T+ +N DD F   L+    A   
Sbjct: 183 KVAVISNIGLSHVENLGSQEGIFKAKMEITTGFVKGNTLVVNGDDKFLSTLRD---AERD 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG  KN D     +    +    E  + G   ++    +G H   N +  + + +
Sbjct: 240 YDLITFGFEKNNDIYCVAYDMTEDSIEFECSVMGNIEKIFIPTVGKHNIYNAMAAIAVGT 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++   + LS F          +     G +T+I+++YNA+P SM         I 
Sbjct: 300 VEGISMEGIKRGLSNFEAT----GMRQDIRKIGEYTVINDTYNASPDSM----EASLSIL 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
              EGRRIAVLGDM EMG+L++  H  + +     +   +   G   + +      +   
Sbjct: 352 GRYEGRRIAVLGDMLEMGDLAEFGHRRVGKACVDNS-DVIITVGESAVFINKEAEENGFD 410

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + ++ + ++     +   +  GD ++ K+S    F + +  + E
Sbjct: 411 VKNSYHFDNLEDAKKLLGEIMQSGDTMLFKASRGMKFEKFVEYVKE 456


>gi|319424764|gb|ADV52838.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Shewanella
           putrefaciens 200]
          Length = 460

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 227/468 (48%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L Q +  H +G      +  +S DSR +     F A+KG  +DGHDF   A
Sbjct: 1   MIPL-SLEVLSQHLGAHRVGN--DVTIQDLSSDSRKVGDATLFVALKGERFDGHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++     +L+IP   V D   A+  +    R +     +A+TGS GKT
Sbjct: 58  IENGAAALMVEREL-----ALNIPQLIVADCQKAMGAIGAYVRDQINPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPADEYGVFELGANHKGEIDYTSG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL--KAK 238
           LVRP++A++  +  AHL  F     +A AK+EIF  L+  GT  +N DD+F +++  KA+
Sbjct: 173 LVRPNVALVNNVGSAHLEGFGSQAGVAQAKSEIFNHLQADGTAIINADDAFADVMSVKAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
            +     +       +  D      K  ++  +  + +  G+S +V     G H   N L
Sbjct: 233 PYKQLHFSQQEGAAKRRIDVIATGHKADADGCYRFMLKYLGESCDVKLPLAGRHQVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      LS   P +GR +  +     G   LID+SYNANP S+ AAI
Sbjct: 293 AAASVCIALGLSLTDIAHGLSQLTPVKGRMQPSQ----LGRIRLIDDSYNANPVSVGAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L +IS +       VLGD+ E+G+ +   H +L ++     I  ++ +G        A
Sbjct: 349 AWLKEISENR----CLVLGDLGELGDNAPLLHAELGQLAKQQGIDALFCTGALSQHTSQA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
                H   +  ++ L   I      G V V+VK S S    R+++ L
Sbjct: 405 FGAEHHESVAVLVEKLIKHINQL--PGQVTVLVKGSRSAAMERVVDGL 450


>gi|212635038|ref|YP_002311563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
 gi|212556522|gb|ACJ28976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           piezotolerans WP3]
          Length = 455

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 139/465 (29%), Positives = 221/465 (47%), Gaps = 21/465 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  ++ + + G  +G      +  +S DSR++  +  F A+KG ++DGH+F+  A
Sbjct: 1   MIKL-SLTEIAEHLGGKLLGD--DFSIEQVSSDSRAVDGKTLFVALKGDNFDGHNFVGSA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA  V+V  ++  +     +    VD+   A+  +    R +     +A+TGS GKT
Sbjct: 58  AENGARAVLVERELPDA-----VAQIIVDNSQRAMGDIGAYVREKLAPVCVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   +     G++NN IGVPLTL R+     FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQQHQVLYTAGNFNNEIGVPLTLLRLQAGDQFGVFELGANHAGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A AK+EIF  +   G   +N DD+F  ++ A S 
Sbjct: 173 LVKPSVAMVNNVASAHLEGFGSLAGVAKAKSEIFNHVATDGIAVINADDAFAAVMLAASQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L   T  +F     AD +              ++    +   VV    G H   N L  
Sbjct: 233 HL---TQLTFAIDAAADVKATALHADKGGRYSFDISYADQVESVVLPLAGRHQVLNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I   L   +    + LS+  P +GR    R     G  T+ID+SYNANPAS+ AAI  
Sbjct: 290 SSICLALGMSLSFINQGLSLLEPVKGRMLPTR----LGRVTVIDDSYNANPASVGAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS    G R  VLGD+ E+G+ +   H +L        +  ++  G        A  
Sbjct: 346 LQEIS----GNRCLVLGDLGELGDNAALLHNELGAEAKAKGVDALFCVGELSEGASHAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + H +  E ++ L  +I +       ++VK S S    R++  L
Sbjct: 402 AAHHRNIDELVEKLMTYI-NESNADITILVKGSRSARMERVVEAL 445


>gi|104783457|ref|YP_609955.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Pseudomonas entomophila L48]
 gi|95112444|emb|CAK17171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Pseudomonas
           entomophila L48]
          Length = 455

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 196/464 (42%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L  A+    +G        G+SIDSRS+   + F A+ GP +DGHD++   
Sbjct: 1   MLKPMTLSQLTTALGARHVG--ADASFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  +    I  + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVERE----IADVDLPQLVVADSRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLAAILRTRGPVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRMGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G E+I  AK EI EGL + GT  LN  D  F++ + +  
Sbjct: 175 LTKPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLADKAFDIWRKR-- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G   I SF                  +      L G    V        +        
Sbjct: 233 -AGTHRILSFALDNPQADFHASDIGRDARGCPSFTLHGPDGSVPVQLNLLGIHNVSNALA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +     +  +  A +  +  +    R    +      +ID+SYNANP SM AAI +L
Sbjct: 292 AAAAAHAVGLSLSGIA-AGLNAVQPVKGRTVAQVAPSGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMAHAVKAF-- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  T   L   +++       +++K S S     ++  L
Sbjct: 404 GEKGRHFATQAELIDAVRTEAASDTTILIKGSRSAAMENVVAAL 447


>gi|299538290|ref|ZP_07051575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298726492|gb|EFI67082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 455

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 203/462 (43%), Gaps = 17/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   +    +       V+GISID+R+I   + F   +G H +GH F++ A +KGA
Sbjct: 4   TLKQLAAWLN-EDMAAFGDTVVSGISIDTRTIQQGDLFVPFRGEHTNGHKFVMQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G  +   D          P+  VDD   AL ++A A R   KA  I ITGS GKT+TK++
Sbjct: 63  GASLWQKD--EPNPPEGYPLLFVDDPELALQEMARAYRNEHKAKFIGITGSNGKTSTKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   K    IG++NN +G+P+T+ ++  D D  + E+GMS  GEI FL+ L RPH
Sbjct: 121 LAGTLAPFFKVQKTIGNFNNQLGLPITILQLDEDTDVAVLEMGMSGFGEIEFLSKLARPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT I  AH+ +      IA AK EI +G++  G +F + D+   + L AK   L   
Sbjct: 181 MTVITNIGEAHMQDLGSRAGIAKAKFEIIQGMQNDGLLFYDGDEPLLQELVAKEQHLQSV 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               FG   N           ++ S        +    +           +  TL  + I
Sbjct: 241 P---FGLESNNLLYADNIHANADGSHFTTHGMMEGDFFISV----LGRHQVKNTLVAMLI 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 +  +  +          R +  L       I+++YNA P S+KAAI  ++  + 
Sbjct: 294 SHKLGLSNEQIRTSLEHVVLTDMRMQQILGTNGALFINDAYNAAPTSVKAAIQFMATSTI 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             E     VLGDM E+G   + FH  LAE ++   I +V L G  +L L   L +     
Sbjct: 354 RPEKW--LVLGDMLELGPNERIFHEGLAEHINEDEIDYVCLFGPRMLYLYKILEKRFEAE 411

Query: 426 YS----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                 +    +   +     +  +V++K S       ++  
Sbjct: 412 RLLYTEDDYTAIIEKL-EQANESSIVLLKGSRGMKLETILKA 452


>gi|319893031|ref|YP_004149906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317162727|gb|ADV06270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 454

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 205/462 (44%), Gaps = 15/462 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + I            + G++IDSR I   + F   KG + DGH +   A+  GA
Sbjct: 5   TLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIPFKGENVDGHQYSEQALNDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D        + PV  V++ L AL +LA A       T+IA+TGS GKTTTK+M
Sbjct: 65  GATFFQRDST-LTAPTNGPVVFVENTLTALQQLAKAYLQHVAPTVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS   +     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+++ +P 
Sbjct: 124 LENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEVSILEMGMSGFHEIELLSNIAQPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 FAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSEGYFIYDGDEP---LLKPHVETLTSA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G S   D Q +      E     V         +    G H  +N  + + +  I
Sbjct: 241 HQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYTISIL---GEHNMRNATIAIAVGRI 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +            +    R +  +      +I+++YNA+P SMKAAI  LS +  
Sbjct: 298 MGLTDEQI---QQQLTSLKLTDMRMQKFMAPNGAMVINDAYNASPTSMKAAIDTLSHMK- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-V 424
              G  I VLGD+ E+GE S+  H  +   L    I  ++  G   +A+ +     ++  
Sbjct: 354 ---GETILVLGDVLELGEQSRQLHESVGSYLENKGIHQLYTFGEGAMAIHEKGKAYVNEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  D L  ++ S +    VV+VK+S       ++  L+E
Sbjct: 411 IHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEALVE 452


>gi|238898849|ref|YP_002924531.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466609|gb|ACQ68383.1| D-alanine:D-alanine-adding enzyme [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 453

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 138/469 (29%), Positives = 213/469 (45%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +   +L + +QGHSIG      +  I IDSR++ P   F A+KG  +DGH F   A
Sbjct: 1   MIPTF-LKELAEVLQGHSIGD--NVPITEIGIDSRTLKPGALFVALKGEQFDGHHFTGEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++        +  + +P   V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 58  QSHGAVGLLSE-----CLLPIKLPQIVVPDTRKALGQLAAWVRQQVNPRLVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + DF + ELG S  G+I     
Sbjct: 113 SVKEMTAAILRQSGHVLYTKGNFNNRIGVPLTLLRLTPEHDFAVLELGASQPGDIADTAA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP   +IT +A AHLS F  ++ +A AK EI   L  TGT  ++     +   K+   
Sbjct: 173 LSRPENVLITNLAQAHLSGFGSLKGVAKAKGEILTALAPTGTAIIHATSHDWPKWKSVFR 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +       K K  DF      +    +   +     S ++     G H   N L   
Sbjct: 233 GKRLWRFG-LEKGKEVDFFASHLSKMPLATDFTLHSPLGSQKIYLPLPGLHNVLNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + AD+    KALS   P  GR       +      L+D++YNAN  SM AA  ++
Sbjct: 292 ALAISVGADLSAISKALSELKPVPGRAFPM---ILGPGKLLLDDTYNANVGSMIAATEMM 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     G R+ V+GDM E+GE S++ H  +  ++    I  V+  G+    + D++  
Sbjct: 349 SNMP----GYRVMVVGDMAELGEQSKNCHKKIGNIMRQAGIDKVFSLGYLSKFMTDSIE- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
             H  +    + L   ++  L +     ++VK S S    +L+  + E+
Sbjct: 404 --HGEHFTQREKLIERVRDLLSEHSEISILVKGSRSSAMEKLVLDIKEQ 450


>gi|15672324|ref|NP_266498.1| D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|12723210|gb|AAK04440.1|AE006271_3 D-Ala-D-Ala adding enzyme [Lactococcus lactis subsp. lactis Il1403]
 gi|326405921|gb|ADZ62992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 440

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 133/461 (28%), Positives = 195/461 (42%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +        +    VN I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGAR-DGHDFIEIAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +     ++  +          VDD L A  KLA     ++K  +IA+TGS GKTTTK
Sbjct: 62  GAIISFSEKEVEQA-------HLLVDDNLLAFQKLAKYYLEKTKVPVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +
Sbjct: 115 DMIAAVLSKKFKTYKTQGNHNNEIGLPYTILHMPDDTEKLVLEMGMDHPGDIDFLSELAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AHL +    E IA  K  I  GL        +   + F     K    G
Sbjct: 175 PELAVITLIGEAHLEHMGSRENIAKGKMGITAGLHGELIAPADPIINAFIPDNQKIIRFG 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     F             K    +  +  +       +     G + A N ++   + 
Sbjct: 235 LPGEDLFIT-----------KLVEHKEKLTFETNFLDESITIPVPGKYNATNAMLAAFVG 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      KAL      E    R      +    L+ + YNANP +M+  +     I
Sbjct: 284 LHYGLSEAEIKKALKE---VELTRNRTEWKKAKNGADLLSDVYNANPTAMRLILETFQAI 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  GR+IAVL DM E+G  +   H D+ + +    I  V+L G  +  L + +     
Sbjct: 341 PKNENGRKIAVLADMLELGPSAAQLHKDILKSIDFNKIDKVYLYGEMMKNLAE-ISTDKA 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           V Y   +D L   + + L   D V+ K SNS     ++  L
Sbjct: 400 VSYFTDLDLLTESLSADLKPTDQVLFKGSNSMKLSEVVEKL 440


>gi|241895767|ref|ZP_04783063.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
 gi|241870810|gb|EER74561.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Weissella paramesenteroides ATCC 33313]
          Length = 455

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 205/467 (43%), Gaps = 19/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++   +    I       V   + DSR + P   F  +   + DGH ++  A   G
Sbjct: 3   LTLREMATILNA-PIQNEADVAVTSTAFDSRQVKPGGLFIPLVADN-DGHHYVDAAESNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   D         +PV  V D L A  +LA     +    ++A++GS GKTTTK+
Sbjct: 61  ATVALWQADH--QNVPSHLPVIIVPDTLAAYQQLASHYLSQVDPLVVAVSGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +     +  KT     ++NN IGVP T+  MP D +  + E+GM H G++ FL+ LV+P
Sbjct: 119 FIAAIGQTSYKTVKTPENFNNEIGVPQTILSMPTDTELLVIEIGMDHPGDLTFLSKLVKP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA++T I  AH+  F   E IA  K EI  GL++ G +  N D+    LL  +      
Sbjct: 179 DIALLTMIGEAHIEFFKTRERIADGKMEIINGLKEHGHLVFNGDEP---LLLERVGQHAH 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               SFG +   D      +          +    +        G +   N L  + +  
Sbjct: 236 LLHDSFGLNSTNDLF--ASEIDMTPVQASFKTNQSAQRFTIPMTGRYNVTNALSAITVGH 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L        +AL+     E R         Q    ++ + YN+NP + K  +   +   
Sbjct: 294 LLHISDKKIAQALAEAPITENR---TEWLDGQFGGKILSDVYNSNPTAAKEVLHFFADTP 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----P 419
              +G+RIAVLGDM ++G+ S + H  L E L+   I+HV+L G  + +L++AL      
Sbjct: 351 --TQGKRIAVLGDMLQLGDASPALHASLMENLNPDKIAHVYLVGEEIKSLEEALLPIYPA 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++  +  +  + L   + + L   D +++K S+      ++N L +
Sbjct: 409 GTVKRYAIDDPESLLKDLLADLTSDDTIMLKGSHGVHLENIVNQLKK 455


>gi|222095812|ref|YP_002529869.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase, degenerate
           [Bacillus cereus Q1]
 gi|221239870|gb|ACM12580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus Q1]
          Length = 451

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 1   MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 60  GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 118 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L ++     
Sbjct: 178 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                SFG     D      +        ++       +V  HG        + + +   
Sbjct: 234 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                   +  K             R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 291 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + + +     V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 349 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 406

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              V   +    +   +   +   DVV++K S       ++  
Sbjct: 407 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 449


>gi|217959727|ref|YP_002338279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|229138919|ref|ZP_04267498.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
 gi|217065505|gb|ACJ79755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus AH187]
 gi|228644544|gb|EEL00797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST26]
          Length = 460

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 206/463 (44%), Gaps = 18/463 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + +
Sbjct: 127 DIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIAQ 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L ++     
Sbjct: 187 PDVAIITMIGQSHLETLGSREEIAKAKFEIVDGLHDDGLFLYNGDEP----LLSQHINTL 242

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                SFG     D      +        ++       +V  HG        + + +   
Sbjct: 243 GIESKSFGGKYTNDLFPTNVQLDEYGVHFKLNHSKIQYDVPLHGKHNIFNTIVGIAV--- 299

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                   +  K             R++    +  FT+I++++NANP+SMKAAI  L ++
Sbjct: 300 --GQFYKVSTEKIQEALQQINITQMRFQFLTAKAGFTIINDAWNANPSSMKAAIETLQKL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           + + +     V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++  
Sbjct: 358 NAYKKKM--IVIGDMLELGKKAETYHREIGKMLNEDSIQYVFTYGELAKIVAEEARKNYH 415

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              V   +    +   +   +   DVV++K S       ++  
Sbjct: 416 AGKVQSFDNKAEIAEEVLKVVTKKDVVLLKGSRGMALEEIVQK 458


>gi|209963950|ref|YP_002296865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
 gi|209957416|gb|ACI98052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rhodospirillum centenum SW]
          Length = 492

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 187/465 (40%), Positives = 259/465 (55%), Gaps = 4/465 (0%)

Query: 4   LWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           LWT  D   A  G              G+SIDSR++ P + F A+KGP++DGHD++  A+
Sbjct: 10  LWTAADAAAATNGRHPTGRTPGHWMATGVSIDSRTLRPGDLFVALKGPNFDGHDYVGDAL 69

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+   +        PV  VDD L AL  L   ARL ++  +IA+TGSVGKT 
Sbjct: 70  AHGAAAALVSR--LPGNVPPEAPVLLVDDTLAALEDLGRVARLNARGKVIAVTGSVGKTG 127

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L + L +   T+A  GS NNH GVPL+LAR P D  +G+FELGM+H GEI  L+ +
Sbjct: 128 TKEALKLCLDARGPTFATQGSLNNHWGVPLSLARFPADAHYGVFELGMNHAGEIGPLSRM 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+P +A+ITT+   HL  F+ +E IA AKAEIFEG+   GT  LN D+  F  L A +  
Sbjct: 188 VQPDVAIITTVEAVHLEFFASVEGIADAKAEIFEGMTPAGTAILNRDNPHFARLVAAART 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  I+SFG  + AD  L +    +  S +   ++G+ ++      G H   N L  L 
Sbjct: 248 QGLTRIWSFGTQEGADAHLLECSLHATSSAVTASIRGERIQYCLSLPGRHHVLNSLAVLL 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            VS    DV  A + LS   P +GRG R R AL +G FT+IDESYNA+P S+ AA +VL 
Sbjct: 308 AVSAAEGDVAAAARQLSQIAPIKGRGLRRRVALAKGSFTVIDESYNASPVSVAAAATVLG 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +  P   GRRIAVLGDM E+G  + S H  LA+         V+  G ++  L D LP +
Sbjct: 368 KADPGAGGRRIAVLGDMLELGAQAPSLHAGLADQFRRAGADLVFCCGPNMKFLFDRLPAA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   ++E    L   +  ++  GDVV+VK S      R+++ L+ 
Sbjct: 428 LRGRHTEDSAALAPLVADAVRAGDVVMVKGSAGSRMSRVVDALVA 472


>gi|291547308|emb|CBL20416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruminococcus sp. SR1/5]
          Length = 462

 Score =  255 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 112/475 (23%), Positives = 198/475 (41%), Gaps = 23/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G   +    V  I+ DSR +     F  + G   D H FI 
Sbjct: 1   MKNL-TLENITKVCNGIYHGPQEKLQEEVTAITTDSRKVEKGGLFVPVVGERVDAHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++ GA   +       ++     P   V   L A+  +A     +    ++ ITGSVG
Sbjct: 60  QVMEAGALATLSER----TLEGADHPYIQVGSSLQAVKDIAEFYLEQLDIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L    +T    G++NN +G+PLT+ R+  + +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYRTLKTQGNFNNELGLPLTVFRLRDEDEIAVLEMGISDFGEMTRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD----SFFEL 234
             + +P   VIT I   HL N    + +  AK EIF+ +++   +  + D       +  
Sbjct: 176 AKIAKPDTCVITNIGTCHLENLGDRDGVLKAKTEIFQYVKRNIVLNGDDDKLSTVKEYNS 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           ++      G     +    ++   +      C +   M    + ++  V     G HM  
Sbjct: 236 MQPVFFGNGENASVTCENVESRGLKGMSCDICLKG-KMAENGEFQTFHVDIPMPGRHMVS 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L    +  +   + +     +    P  GR            F ++D+ YNANP SMK
Sbjct: 295 NALAAAAVGRLYGLNAEQIKNGIESLEPVSGRFNMIE----TDKFMIVDDCYNANPMSMK 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A++ VL      G GR++A+LGDM E+G    + H  +        I      G     +
Sbjct: 351 ASLDVLQD----GLGRKVAILGDMGELGTDEAALHEGVGVHAGQCRIDACICVGPLAAHI 406

Query: 415 KDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   ++     V   + ++ L   + + +  GD ++VK+S+   F  ++  L E
Sbjct: 407 AEKASQTNPDLTVIREKDLESLLKNLNTYVKPGDTILVKASHFMKFENVVKALQE 461


>gi|91977864|ref|YP_570523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684320|gb|ABE40622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 479

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 199/467 (42%), Positives = 261/467 (55%), Gaps = 2/467 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  D +      +        V GISIDSR++AP +A+FAIKG  +DGHDF+  A+ 
Sbjct: 5   PLWT-SDAMAEAMRAAASGSLPRDVFGISIDSRTLAPGDAYFAIKGDVHDGHDFVAAALN 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV     A   +   P+  VDDVL  L +L  AAR R  A IIA+TGSVGKT+T
Sbjct: 64  AGAALAVVERAQRAKFAA-DAPLLVVDDVLDGLRELGRAARARLDAKIIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  +T+A + S+NNH GVPL+LAR P DV + +FE+GM+H GEI  L  +V
Sbjct: 123 KEALRGVLGAQGETHASVASFNNHWGVPLSLARCPADVRYAVFEIGMNHAGEIEPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+ +ITT+ P HL  FSGIE IA AKAEIF GL   GT  LN D++ F+ L   +   
Sbjct: 183 RPHLVIITTVEPVHLEFFSGIEAIADAKAEIFAGLVPGGTAVLNRDNAMFKRLTDSARKA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+  + SFG    AD +L      ++ S +   + G+ +       G H+A N L  L  
Sbjct: 243 GVGRVVSFGADVEADARLLDVALHADCSAVHATIFGRDVTYKLGIPGRHIAMNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + AD+  A  ALS   P  GRG R      Q   TLIDESYNANPASM AA+ VL Q
Sbjct: 303 AETVGADLALAALALSHVQPAAGRGVRRALEFGQSEATLIDESYNANPASMVAALGVLGQ 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +GRRI VLGDM E+G      H DLAE +    I  V+  G  +  L DAL    
Sbjct: 363 VPVGPQGRRIVVLGDMLELGPAGPELHRDLAESVRNNAIDLVFCCGPLMRNLWDALSSGK 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+ET   L   + +++  GDV+++K S       ++  L + FP
Sbjct: 423 RGGYAETAAALESQVVAAIRAGDVLMIKGSLGSRMKTIVTALEKRFP 469


>gi|253699153|ref|YP_003020342.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
 gi|251774003|gb|ACT16584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           sp. M21]
          Length = 467

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 205/468 (43%), Gaps = 17/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T +++ +A  G  IG    G  + +S DSR +AP E F A++G  +DGHDFI+ AV +
Sbjct: 1   MFTLNEIAEATGGRMIGEGA-GEASAVSTDSRQVAPGELFVALRGERFDGHDFIIPAVSQ 59

Query: 64  GAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G  + +                   V D L AL  LA   R R     + +TGS GKTTT
Sbjct: 60  GITVFLAEESWAERHELPKGAGAVLVPDTLRALGDLAAYHRRRFNLKTVCVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L+         G+ NN IG+PLT+ R+     + +FE+GMS  GEI  L  + 
Sbjct: 120 KEMLARILAQTGPGLKTEGNLNNLIGLPLTIFRLTGRERWAVFEIGMSEFGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +IT   PAHL     +E +A AK E+F  L+       N DD     L +     
Sbjct: 180 EPQVGIITNAFPAHLETLGSVEGVARAKGELFLRLKPGSVAVYNVDDP----LVSACPTH 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T  +FG                      ++L     +V     G H   N L     
Sbjct: 236 LNVTRLTFGLRGAEVSSASIQSLGKRGESFTLRLPDGEQQVTLSAYGRHNIYNALAAAAA 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   + L  F P + R +    A      TLID+SYNANPASM AA++ L +
Sbjct: 296 AHALGVSGEVIRQGLEEFSPYDKRFQLEEVAG----VTLIDDSYNANPASMAAALTTLKE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +   GEGR +AVLGDM E+G  ++  H +L ++ +   +  + L G  +         + 
Sbjct: 352 L--QGEGRLVAVLGDMLELGLGTEEAHRELGKLAAGS-VDRLCLLGKLIDETAKGALEAG 408

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +      + L   + + +  GD ++ K S      ++   + +
Sbjct: 409 LPETDLVLGRDHEQLAQELLTFVQPGDCILFKGSRGMKMDKVAKAVRQ 456


>gi|295113946|emb|CBL32583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Enterococcus sp. 7L76]
          Length = 457

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           S    G+RIAVLGDM E+G  S + H ++A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQEMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PTNIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|253997373|ref|YP_003049437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
 gi|253984052|gb|ACT48910.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera mobilis JLW8]
          Length = 450

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 137/467 (29%), Positives = 223/467 (47%), Gaps = 24/467 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +   A+    +G       + +  DSR+I   + F A+KG ++DG+ F   A++ 
Sbjct: 1   MMMLSEAAAALGVQHMG--ADVQFSSVGSDSRNIVAGQLFVALKGANFDGNAFAQEALEL 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+   V +      P   V D   AL +LA   R +    ++A+TGS GKTTTK
Sbjct: 59  GAAAVLVSDASVQAE-----PRIVVADTRLALGELAKYWRQKFAMPVVAVTGSNGKTTTK 113

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML+  LS    +    +A  G+ NN IGVPLTL +M     + + E+GM+HLGEI +LT
Sbjct: 114 EMLSAILSVVAGAKASVHATYGNLNNDIGVPLTLLKMQPAHQYAVVEMGMNHLGEIDYLT 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H+ +P +A+I     AH+      E IA AK EIF GL+  G   +N D  +    K+ +
Sbjct: 174 HIAQPDVALINNAGIAHIGELGSRENIAKAKGEIFAGLKSDGVAVINADSDYAYYWKSLN 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I    +FG    AD   R +++    + + +      + V  +  G H   N L  
Sbjct: 234 PHRKI---VTFGLKNPADVSAR-YQENDGYASVVLATASDEVSVQLNVQGEHNISNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++   + L+ F    GR              +ID++YNANP SMKAAI+V
Sbjct: 290 GATAYALGVSLNDIGRGLASFTGVYGR---LERKAGINGAVVIDDTYNANPDSMKAAINV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L++++    G++I VLGDM E+G  ++S H ++        ++ ++  G   +    +  
Sbjct: 347 LAKLA----GKKILVLGDMGELGADAKSMHAEVGAYAKAAGLTTLYCLGNLSVETARSFG 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +  + + +   +  +L  G  V+VK S      R++NLL+ 
Sbjct: 403 AG--AEHFSSPEAIAQAVLPALAQGTTVLVKGSRFMQMERVVNLLVA 447


>gi|157373547|ref|YP_001472147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315921|gb|ABV35019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase [Shewanella
           sediminis HAW-EB3]
          Length = 455

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 228/469 (48%), Gaps = 27/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL T   L   +    IG  P   +  +  DSRSI PQ  F A+KG  +DGHDF   A
Sbjct: 1   MIPL-TLLQLSHRLDARLIG--PDTEIAYVCSDSRSIPPQTLFVALKGERFDGHDFAHLA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V  ++      L +P   V D   A+ ++    R   +   IA+TGS GKT
Sbjct: 58  VENGANALLVTHEL-----PLDLPQLIVKDTQKAMGEIGAYLREVIQPKSIALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+    +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEEGDEFGVFELGANHRGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +  +A+AK+EIF  L   GT  +N DDSF  ++K    
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLAGVAAAKSEIFNHLSPDGTAVINADDSFARVMKE--- 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A       +F     AD Q    +     +   ++    + + V     G H   N L  
Sbjct: 230 AASEHKQLTFAIEAAADLQGSGLEPDLLGRYCFKMSYLNQEVSVTLPLSGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            GI   L   +   +  LS+  P +GR    +     G   +ID+SYNANPAS+ AAI  
Sbjct: 290 AGICLTLGLPLSEIVSGLSLLEPVKGRMLPTQ----LGRVRVIDDSYNANPASVSAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    +G R  VLGD+ E+G+ +   H +L E+  +  I  ++  G        A  
Sbjct: 346 LQEI----DGYRCLVLGDLGELGDNASLLHTELGELAKIRGIEALFSLGELSANASTAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLL 465
                 + + ++ +   + + +    GDV V+VK S S    R++  L+
Sbjct: 402 ----GVHHQELEQVVNNLVNHINQLQGDVTVLVKGSRSAKMERVVEALI 446


>gi|269958670|ref|YP_003328457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
 gi|269848499|gb|ACZ49143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Anaplasma
           centrale str. Israel]
          Length = 463

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 153/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 1   MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+   V +      P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 60  GAVAAVVDEAYVPTADCG--PLVAVKDTLQALHDIATMRLRDTRAKVIAITGSAGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 118 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 178 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+ + ++ S    +    +     +         +  +     + 
Sbjct: 238 A-RIISFGVGAGADVQIFRREEPSNSITLRCFGEELQCNLKSGARHLAYSVAITAA--VG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +          L+D++YNANP SM AAI  LS +
Sbjct: 295 RAFSIDLTQARGAMEEFVPLEGRGKVHVTTFKGREIVLLDDAYNANPLSMVAAIENLSNL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 355 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHILALYDVLPQHLS 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 415 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 457


>gi|222475283|ref|YP_002563699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
 gi|222419420|gb|ACM49443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Florida]
          Length = 476

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 237/463 (51%), Gaps = 6/463 (1%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +  A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  K
Sbjct: 14  MWCAKSMGAAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSK 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+   V +      P+  V D L AL+ +A      ++A +IAITGS GKTTTK
Sbjct: 73  GAVAAVVDEVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTK 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +L+ ALS   K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + R
Sbjct: 131 YVLSGALSKYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIAR 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +  
Sbjct: 191 PDVAVITNVGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYC 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG    AD Q+ + ++ S         +     +         +  +     + 
Sbjct: 251 A-RIISFGVGVGADVQIFRREEPSNSVTFRCFGEELQYNLKSGARHLAYSVAITAA--VG 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              + D+  A  A+  F P EGRGK +  A       L+D++YNANP SM AAI  LS +
Sbjct: 308 HAFSIDLTQARGAMEEFVPLEGRGKVHVTAFKGREIVLLDDAYNANPLSMVAAIENLSNL 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR+A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ + 
Sbjct: 368 NHARVLRRVAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLR 427

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +          ++  +  GD V+VK S +     ++  LLE
Sbjct: 428 GGHFADHGEALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 470


>gi|332523613|ref|ZP_08399865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314877|gb|EGJ27862.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 454

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 210/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + +++ + ++    I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LSLYEVAKVVEAQNIISEFDDVPLKQIEFDSRKIEKGDLFLPLKGER-DGHDFIDKAFES 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKEIS------GHPYLLVKDCLKAFQKLAKYYIEKMRLDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIHLLSEIAQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L      + 
Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        + ++        ++ +       +  +     G + A N ++   + 
Sbjct: 236 ----------FGENQEIFVKSIEESKNSLSFTTNVLNQALTLPLSGKYNATNAMLAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   +QI
Sbjct: 286 KLLAVADEDIIEALEH---VQLTRNRTEWKKASNGADILSDVYNANPTAMRLILETFTQI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           +P+ +G++IA+L DM E+G  S   H  L E L+  +I+H+   G  + AL     +   
Sbjct: 343 APNQDGQKIALLADMKELGPSSVDLHCQLIEALNPDDINHLIFYGKDIEALAQLASQLYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V +       +  + L   +Q  L   D ++VK S+S     ++N LL 
Sbjct: 403 IGKVFFFRKTDTEDQFEDLCHHVQEILGANDQILVKGSHSMNLEEVVNRLLA 454


>gi|24379080|ref|NP_721035.1| putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
 gi|24376979|gb|AAN58341.1|AE014904_4 putative D-Ala-D-Ala adding enzyme;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase pentapeptide
           synthase [Streptococcus mutans UA159]
          Length = 452

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 130/468 (27%), Positives = 209/468 (44%), Gaps = 26/468 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++   +     + +     +N I  DSR I   + F  ++G   DGH+FI  A   
Sbjct: 3   LTLQEIASVVGAQNDVSLFEDLTINAIEFDSRQIKTGDLFLPLQGAR-DGHEFIDTAFAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ +       P   V D L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEKNITS-----DYPYILVVDCLKAFQDLAQYYLEKMRVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L  
Sbjct: 117 DMIATILATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHLGDIALLSNLTH 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL  F   E+IA  K +I +G++  G +    D      L  K   + 
Sbjct: 177 PHIAVVTLIGEAHLEFFGSREKIAEGKMQITQGMDGHGILIAPADKIINSFLPEKQKVIR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       AD  +   +    ++++  +      E+     G + A N ++   + 
Sbjct: 237 ----------FGADEDIFVTELEEHKNYLNFKTNFLDNEIKLPVTGKYNATNAMIASYVG 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL+          R           ++ + YNANP +MK  +   S I
Sbjct: 287 KLLNVSEEKIISALAQ---LNLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSSI 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  G++IAVL DM E+G+   + H  +   L    I  ++L G  + AL D + +   
Sbjct: 344 PANNGGKKIAVLADMKELGDSELALHAAMIASLDPAVIDRIFLFGPLMQALADEVAQVYS 403

Query: 424 V---HYS---ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           V   +Y    + +D L   IQ  L   D +++K SNS    +++  L 
Sbjct: 404 VGKWYYFAQADQVDELTEQIQKVLGPNDQILLKGSNSMKLAQVVECLE 451


>gi|293596170|ref|ZP_05228877.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
 gi|293593100|gb|EFG00861.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J1-194]
          Length = 470

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     ++
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|15606186|ref|NP_213563.1| UDP-MurNAc-pentapeptide sythetase [Aquifex aeolicus VF5]
 gi|2983375|gb|AAC06961.1| UDP-MURNAC-pentapeptide sythetase [Aquifex aeolicus VF5]
          Length = 445

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 207/463 (44%), Gaps = 30/463 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + ++G  +G  P   V   SIDSR+I   E F  +KG  +D H+FI  A +KGA
Sbjct: 4   TSQTLAKILKGSLVG-SPNIPVKTFSIDSRTIKQGEVFIPLKGQKFDAHNFIPDAFKKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+   ++    G     +  V   L +L ++A   R   K  +I + GS GKTTTKE+
Sbjct: 63  VGVISEREVDVPPGKF---LIKVRSTLESLREIAKFKRENFKGKVIGVAGSAGKTTTKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  LS   K Y   G+ N+ +G+PL +A   ++ DF + E G S  GEI+ L  + +PH
Sbjct: 120 LSHLLSIKGKVYKSPGNLNSQVGLPLAVANASLETDFWVLEHGASKRGEIKNLIEITKPH 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +ITT+   HL  F  +E +    AE+F  +       +            K  + G  
Sbjct: 180 VRLITTLGEEHLEGFGSLEGVIWGNAEMFCRISDNFYAVIPGKFLDTLFFLPKKISFGE- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                        +     Q  E S   V  + +  +         + +N+L    ++ +
Sbjct: 239 -------------RGELQAQNVEVSEKGVSFEVEGEKFFISVPSLGLVENILACFCVLKV 285

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +    +AL  F P EGR        N   F LID++YNANP S++ AI  +     
Sbjct: 286 LGFTLKEFKEALKEFSPVEGRM----KVFNLKNFILIDDTYNANPVSLRNAIKSVGAFKR 341

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV 424
                 + +LGDM E+GE S+  H ++  +L+    I      G  +    D+  +S   
Sbjct: 342 DK----VFILGDMLELGEHSKELHEEVGRLLNTVKGIRLAIFYGDEMKYAYDSFNKSKKF 397

Query: 425 HYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLL 465
            Y++T + +  FI+ +L   +G  V++K S       +++ L 
Sbjct: 398 -YAKTKEEMLQFIEENLKEFEGCAVLIKGSRGMKLEEVVDFLR 439


>gi|217979585|ref|YP_002363732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
 gi|217504961|gb|ACK52370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylocella
           silvestris BL2]
          Length = 498

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 195/463 (42%), Positives = 274/463 (59%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT   L+  ++    G  P+    G+SID+R++ P + FFAI G + DGHD++  A++
Sbjct: 23  PLWTGLGLVAPLEARISGGAPRRGATGVSIDTRTLCPGDLFFAISGFNSDGHDYVAAALE 82

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   VV+     S+  L       DDVL AL +L VAAR R++A I A+TGSVGKT+T
Sbjct: 83  KGALAAVVDEAHAESLARLGPLYVVRDDVLAALERLGVAARARTRARIAAVTGSVGKTST 142

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L +ALS+  +T+A + SYNNH GVPLTLARMP   +FG+FE+GM+H GEI  LT +V
Sbjct: 143 KEALRLALSAAGRTHASVASYNNHWGVPLTLARMPRQTEFGVFEIGMNHQGEITPLTRMV 202

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+AP H+ NF+G+E IA AKAEIF GLE  G   L  D+  FE L A +   
Sbjct: 203 RPHVAIITTVAPVHMENFTGVEAIADAKAEIFAGLEPGGVAILPADNPQFERLAAAAKRS 262

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG  K+A+ +L   +  ++ S +E  + G+ +       G H+A N L  L  
Sbjct: 263 AAGLVTSFGADKHAEARLLDVRLAADHSMVEADICGQLLTYRLGAPGRHLAMNSLAVLLA 322

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D   A + L+ F  + GRG+R       G FTLIDESYNANPASM+AA  +   
Sbjct: 323 AKALGVDPREAAQTLASFAAQPGRGQRLELQAPDGAFTLIDESYNANPASMRAAFDLAGA 382

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++P   GRR+AVLGDM E+G  +   H  LA+ L+  +   V+ +G     L DALP ++
Sbjct: 383 LAPPSPGRRVAVLGDMLELGSHAADMHAGLAQDLAANHFDLVFAAGPLCKHLFDALPAAM 442

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + E    +   + +++  GD+V+VK SN      ++  L 
Sbjct: 443 RGEWRENAQMIAPAVAAAVHAGDLVIVKGSNGSKMSAVVEALK 485


>gi|16126796|ref|NP_421360.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|221235577|ref|YP_002518014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
 gi|13424124|gb|AAK24528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           crescentus CB15]
 gi|220964750|gb|ACL96106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Caulobacter crescentus NA1000]
          Length = 462

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 180/457 (39%), Positives = 258/457 (56%), Gaps = 16/457 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + LWT  ++ +A+ G   G      V+G+SID+R++ P + F  + G   DGHDF+  AV
Sbjct: 3   DALWTADEIAEAVGGQVAG---DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAV 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120
             GA  V+          ++  P   V D   AL  L VAAR R  +    A+TGSVGKT
Sbjct: 59  ANGAAGVLAAR-------AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +    +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H GEI  L+ 
Sbjct: 112 SVTRAIEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSG 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            VRPH   ITT+ P H+ NFS  E  +A AKAEI  GL+  G   LN D+ +F+ LK ++
Sbjct: 172 FVRPHAVAITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEA 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +G  T++SFG++  A  +L  ++     + + V L+G+++    H  G H   N L  
Sbjct: 232 EKVGA-TVWSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCV 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  
Sbjct: 291 LLMLEALDVPRETALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKT 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   +    GRR+  L DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP
Sbjct: 351 LG--ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +    Y+E  + L   +  ++  GDVV+VK SN   
Sbjct: 409 PTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGSK 445


>gi|110680538|ref|YP_683545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456654|gb|ABG32859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter denitrificans OCh 114]
          Length = 476

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 170/476 (35%), Positives = 246/476 (51%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +  +A  G       Q    G+SID+R++   + F A+     DGHDF+  A
Sbjct: 1   MT-LWTSAEAAEATGGT---TTSQWNATGVSIDTRTLQAGDLFVALTDVR-DGHDFVKQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+   V        P+  V+DV GAL  L  A R R    ++A+TGSVGKT
Sbjct: 56  LDKGAAAALVSH--VPPGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   + +A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  
Sbjct: 114 STKEMLLAMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  PH+A+ITT+A AHL  F  I  IA  KA IFEG+   G   LN D     +L AK+ 
Sbjct: 174 MAAPHVALITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQ 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    +FG+    DF+L +     + + +  ++    +    +  G H A N L  +
Sbjct: 234 DCRL-RDITFGEHGY-DFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAI 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI----DESYNANPASMKAA 356
            +++ L  DV  A+ +L  + P +GRG+R R  L+     L     D+SYNANP SM AA
Sbjct: 292 AVMAALRTDVALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAA 351

Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V       + I    +GRRIA LGDM E+G    + H  LA + +   I  +   G  
Sbjct: 352 LEVLAAAEVTNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPV 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL DALP      + E  +     +++ +  GDVV+ K S S     +++ + +
Sbjct: 412 MRALYDALPEPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467


>gi|241889794|ref|ZP_04777092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863416|gb|EER67800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 453

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 204/469 (43%), Gaps = 19/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  DL + +      I     + GI+IDSR +   + F    G + DGH+FI  A
Sbjct: 1   MKYLVT--DLEKILNAKKANITSNVEITGIAIDSRKVKQGDLFIPFLGENVDGHNFIESA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +   D   S  +    +  V+D   A+  LA        A  IAITGS GKT
Sbjct: 59  FEKGAAASLSLKDDFVSENN----IIYVNDSYEAIQTLAKHYLESLNAKTIAITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++T  LS+  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ 
Sbjct: 115 TTKDIITSVLSTKYKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADDFGQLDFLSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P   VIT I  +H+  F   E IA AK EI  G++K G    N D    E+L     
Sbjct: 175 LVEPDYTVITNIGESHIEFFKSREGIAKAKFEITNGMKKDGYFVYNGD----EVLIKTLV 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S G++   D  L  +    ++   ++ +  +       G            +
Sbjct: 231 DSSEINATSCGENSYNDIILESYTITRDKIDFKLNISDEQYFTKLKGKHNLYNIMFATAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    +       ++ +  E  G R +    +    +I+++YNA+P SMKA + V+
Sbjct: 291 ----ASKIGLTNEEIHKAIENTVEITGMRLQSIPYKEDSLIINDAYNASPTSMKAGVDVV 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDAL 418
           S         +  VLG M E+G    ++H ++ E +S    +I  V   G     +   +
Sbjct: 347 SSYDDFD--YKTLVLGSMFELGPNEVNYHGEVGEYISENTNDIDLVISVGDLAENITKQI 404

Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               I   +  T   +  +++++    +V++ K+S S     +I  + +
Sbjct: 405 KNDKIKTLHFPTTAEVSEYLKNNKHKNEVILFKASRSMKLETIIEEITK 453


>gi|170728856|ref|YP_001762882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
 gi|169814203|gb|ACA88787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           woodyi ATCC 51908]
          Length = 455

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 147/467 (31%), Positives = 220/467 (47%), Gaps = 23/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q + G  IG      +  +  DSRSI  +  F A+KG  +DGHDF   A
Sbjct: 1   MIRL-TLSLLSQRLNGRLIG--SDTEILNVCSDSRSIPEKTLFVALKGEKFDGHDFAHLA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V+ ++      L IP   V D   A+ ++    +   +   +A+TGS GKT
Sbjct: 58  LENGASALLVSRELA-----LDIPQLLVSDTQKAMGEIGAYLKELVQPKSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+  D ++G+FELG +HLGEI + + 
Sbjct: 113 SVKEMVASILSQHHKVLYTAGNFNNEIGVPLTLLRLEGDEEYGVFELGANHLGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +A AK+EIF  L   G   +N DD F ++++    
Sbjct: 173 LVKPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFNHLSADGIAVINLDDPFADVMR---G 229

Query: 241 ALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A    T  +F     AD +  +       +    +        +     G H   N L  
Sbjct: 230 AASQFTQLTFAIESQADVKASELVSDSLGRYRFTLNYLNSCESITLPLSGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I   L   ++  +  L +  P +GR   +      G   +ID+SYNANPAS+ AAI  
Sbjct: 290 TAICLSLGLSLEEVLSGLKLVEPVKGRMLPHE----LGRVRIIDDSYNANPASVGAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    +G R  VLGD+ E+G+ +   H +L E      I  ++  G        A  
Sbjct: 346 LQEI----DGFRCLVLGDLGELGDNASLLHSELGEYAKKQGIDALFTLGELSENTAAAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLL 465
                  +  +  L   I      GDV V+VK S S G  R++  L 
Sbjct: 402 GQHQQELAPLVLCLINTINQL--QGDVTVLVKGSRSAGMERVVEALK 446


>gi|218780975|ref|YP_002432293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762359|gb|ACL04825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 472

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 208/470 (44%), Gaps = 16/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  +++QA  G      P    +GI+IDSR+    + F AI G   DGHDF+  A+  G
Sbjct: 7   FTLSEIVQATGGERFSGTPDLCFSGIAIDSRTAMSSDLFIAIVGERLDGHDFVRQAINGG 66

Query: 65  AGLVVVNTDMVASI-----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              +V++     S        L +    V D   AL K+A   R     +I AITGS GK
Sbjct: 67  VRGIVIDKKHAESFSYARMAKLELGCVVVPDTTEALGKIANQYRKGFGVSIAAITGSNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE+    L++  + +   G++NN IG+P TL  +     + + ELGM+H GEI  LT
Sbjct: 127 TTTKELTAAVLAAKYRVHKSTGNHNNQIGLPFTLLGLGPAHQWAVVELGMNHFGEIARLT 186

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P I VIT + P HL     +E + +AK E+ E +            +  + L +  
Sbjct: 187 QICEPDIGVITNVGPGHLEGLGSVEGVLAAKGELLENMA-----NKTAVLNLDDKLVSTL 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                     FGK   A  + +  K  +E     + L+ + + V     G  M  N L  
Sbjct: 242 ADKYQGETVLFGKGAKAQVRAKNIKHANEGVRFTLCLKDEELPVQLRLHGDCMVHNALAA 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             AL   +P +GR              LID++YNANPAS  AA+  
Sbjct: 302 AAVGVSAGVSPKEIRDALETVNPVKGRQN---VVSLGNDVQLIDDAYNANPASFAAAVMT 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++   +GR I  + DM E+G+ S   H++L  + +   +S +++SG++         
Sbjct: 359 LQALAKASKGRMIMAVSDMMELGDYSVDAHMELGRMAAQAGVSLLFISGYYAGWTAKGAR 418

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                I   + +    +   +  ++   D ++VK SNS G   ++  L +
Sbjct: 419 EAGMGIDQVFIDEKPNIVTRLAEAVQAKDRILVKGSNSTGMSEVVQGLKD 468


>gi|194337864|ref|YP_002019658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310341|gb|ACF45041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1005

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 192/441 (43%), Gaps = 10/441 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           + IDSR +   E F A+KG + DGH FI    +KGA   +V+       GS+  P     
Sbjct: 563 VVIDSREVRGGELFIALKGENADGHCFIGTVFEKGASWAMVSRQWYEEQGSVDPPPGKGF 622

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD +  L +LA   R +    ++AI GS GKTTTKEM+   L +  + +   G+ NN
Sbjct: 623 IVTDDTVAGLQQLATIYRHQFSIPVLAIGGSNGKTTTKEMVASVLGTGFRVHMSEGNRNN 682

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++  D D  + E+G++H GE+  L  +  P  A++T I   HL     ++ 
Sbjct: 683 HLGVPLTLLQLRGDTDIAVVEMGINHPGEMVLLAAIGSPTHALLTNIGHEHLEFLVDLDG 742

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A         +        +     +  A S   G        +S+++ +       
Sbjct: 743 V-EAAEIPLFDYLRQSGGIAFVNMDDPRISAAASGMAGSVPYGMATRSEHSCWARDISVN 801

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            +      +     S  V  +  G H   N +    +       +    + L    P  G
Sbjct: 802 SAGALSFLLCSIAGSEPVTLNFTGKHNVMNAIAAATVGHYFGLSLCQIREGLERLTPAPG 861

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +     L+     +++++YNAN  SM+ AI  L  +   G G+R+AVLGDM E+G   
Sbjct: 862 WKRL--EVLDACGVRILNDTYNANSDSMRKAIDALCDLP--GAGKRVAVLGDMLELGLAG 917

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  +   L   ++  ++  G        A+P     H  E+ + L   +++ L +GD
Sbjct: 918 EVEHQAIGNYLQQSSVDLLFTFGESARLFGRAVPERYRGH-FESREALLEALRTVLQEGD 976

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           +V+ K S      ++++ L+ 
Sbjct: 977 IVLFKGSRGMKLEQVVDALIN 997



 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 165/477 (34%), Gaps = 41/477 (8%)

Query: 7   FHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +LL+ I     +G     G ++ ++ DSR + P   F AIKG   DG  FI  AV++G
Sbjct: 15  LEELLKEISSLELLGKAGFGGAISMVTSDSREVLPGSLFVAIKGYATDGGRFIRSAVERG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A  V+       S  +L      V D   AL + A     +   +  II +TG+ GKTTT
Sbjct: 75  AAAVICEE--FPSDPALPCLYIKVADARKALAEAARIFYGKASDQLLIIGVTGTNGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
            +++T  L++   +   IG+    IG                  L    +       + E
Sbjct: 133 AKLITAMLNANGISAGYIGTNMCRIGELEIPLDRTTPEAHGLHALFRQMLEAGCKAAVME 192

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH   ++ +  + R H A+ T +   HL     + + A AK ++F+ L   G   LN
Sbjct: 193 V-SSHALVLQRVYGI-RFHAALFTNLTQEHLDFHETMHDYAEAKQQLFDQLSPDGFAVLN 250

Query: 227 YDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD + E + A+     +   T+    +   +  +L               +     E V
Sbjct: 251 IDDPYAEQMAARVADDKIYCCTMQRGLQPALSCSRLFAADLLQGTLASSTIVLHFPDESV 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N++  L   +I T    +A +  +          R           +   
Sbjct: 311 EMQVKLPGNFNVMNVLEAAAIGTGMALSAKEICNALSAVSTVEGRMERVGESRQGWMAFV 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++  A+  L  +      R I V G     G             ++      V
Sbjct: 371 DYAHTPDALFKALDALHGLK-EDASRLIVVFG----CGGNRDKEKRSEMGRIASEIADEV 425

Query: 405 WLS-----GFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++           + DA+ R I   +                 L  GD+++V  K 
Sbjct: 426 IITSDNPRDEDPEEILDAIERGITGVHYLRISDRAEAIRRAVLMLKAGDLLLVAGKG 482


>gi|229172912|ref|ZP_04300465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
 gi|228610535|gb|EEK67804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus MM3]
          Length = 451

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 120/463 (25%), Positives = 212/463 (45%), Gaps = 20/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + + G  +        ++G+ IDS+SI     F  I      DGHD++  A+ 
Sbjct: 1   MNLKKLEEVVDGEGLQESFHYIEIHGVCIDSKSIKEGNVFVPII--RVKDGHDYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAVASLWKKSYG--TPPKGMPIIFVDDTLFALQQLAQFYRKELNVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + 
Sbjct: 117 KDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSIIA 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I +IT I  +HL      EEIA AK EI +GL+  G    N D+     L  K+  L
Sbjct: 177 QPDIVIITMIGHSHLETLGSKEEIAKAKLEIIDGLKDEGLCLYNGDEP----LLLKNKNL 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T  +FG+    D      +        ++       +V  HG       N+L  +  
Sbjct: 233 SSITCKAFGEKYTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKH-----NILNAIVG 287

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +++         K             R++    +  FT+I++++NA+P+SMKAAI  L  
Sbjct: 288 IAVGQFYNVPTEKIQKALRQVNITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQT 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           ++ + +     V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   +  
Sbjct: 348 LNAYKKKM--IVIGDMLELGKNAETYHREIGKMLNQESIQYVFTYGELAEIVAEEARKKY 405

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
               V    +   +   +   +   D++++K S       ++ 
Sbjct: 406 DIGKVQSFNSKAKIAEEVLKVITKKDIILLKGSRGMALEEIVQ 448


>gi|317495357|ref|ZP_07953727.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
 gi|316914779|gb|EFV36255.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Gemella
           moribillum M424]
          Length = 452

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 120/462 (25%), Positives = 211/462 (45%), Gaps = 17/462 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL + +    I +V    + GI+IDSR +   + F    G + DGHD+I  A +KGA 
Sbjct: 5   VKDLEKILNAKKINLVDNKEITGIAIDSRKVKEGDLFIPFLGENVDGHDYIESAFEKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   S  +    +  V+D   A+  LA          I+AITGS GKTTTK+++
Sbjct: 65  ASLSLKDDFVSDNN----IIYVNDSYEAIQGLAKHYLEYLNVKIVAITGSNGKTTTKDIV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L +  K +   G++NN +GVPLT+   P D D  + E+G  + G++ FL+ LV+P  
Sbjct: 121 TSILETKFKVHKTQGNFNNELGVPLTILAAPEDSDILVLEMGADNFGQLDFLSKLVKPDY 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I  +H+  F     IA AK EI  G++K G    N D+   + L           
Sbjct: 181 TIITNIGESHIEFFGSRAGIAKAKFEITNGMKKDGFFVYNGDEPLLKELVEN----SSIN 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S G++   D  L  +    ++   ++ +   +        G H   N++  + I   +
Sbjct: 237 ATSCGENSYNDIILENYTITRDKIDFKLSIDKNNFSTTLK--GKHNLFNIMFAVAIAKKI 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    A+   +  +    R           +I+++YNA+P SMKAA+ V+S ++  
Sbjct: 295 GLTNEEIRHAI--DNISKITNMRLESITYGEDSLIINDAYNASPTSMKAAVDVISDLNDF 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDAL-PRSIH 423
               +  VLG M E+G     +H  +   ++    +I+ V   G     + D +  + I 
Sbjct: 353 E--FKTLVLGSMFELGPNEVEYHSGVGTYINNNSRDINLVISIGDLAKNITDNINNKDIS 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  T++ +  +++++    +V++ K+S S     +IN + 
Sbjct: 411 TLHFSTVEEVTDYLKANKHKNEVILFKASRSMKLETIINDIK 452


>gi|258611459|ref|ZP_05232486.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
 gi|258600180|gb|EEW13505.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N3-165]
          Length = 470

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|313890796|ref|ZP_07824421.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120897|gb|EFR44011.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 454

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 209/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + +++ + ++    I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LSLYEVAKVVEAQNIISEFDDVPLKQIEFDSRRIEKGDLFLPLKGER-DGHDFIEKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V D L A  +LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKEIS------GHPYILVKDCLKAFQELAKYYIEKMRLDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ +V+
Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIHLLSEIVQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L      + 
Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAQGKMQITDGMNSHGILIAPGDPIIDPYLPENQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        + ++        ++ +          +     G + A N ++   + 
Sbjct: 236 ----------FGENQEIFVNSIEESKNSLRFTTNVLEQALTLPLSGKYNAINAMLAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  ++AL        R +  + +       ++ + YNANP +M+  +   +QI
Sbjct: 286 KLLAVAEEDILEALEHIQLTGNRTEWKKASNGAD---ILSDVYNANPTAMRLILETFAQI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
            P+  G++IA+L DM E+G  S   H  L + L+  +I H+   G  +  L     +   
Sbjct: 343 VPNQGGQKIALLADMKELGPSSVDLHCQLIQALNPDDIDHLIFYGQDIEPLAQLASQMYP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V +       +  + L+  +Q  L   D +++K S+S     ++N LL 
Sbjct: 403 IGKVFFFKKTEAEDQFEDLYHHVQEILGSNDQILIKGSHSMHLEEIVNRLLA 454


>gi|293596831|ref|ZP_05264596.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|293582786|gb|EFF94818.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes HPB2262]
 gi|332311263|gb|EGJ24358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes str. Scott A]
          Length = 470

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|307153230|ref|YP_003888614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
 gi|306983458|gb|ADN15339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7822]
          Length = 454

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 142/471 (30%), Positives = 214/471 (45%), Gaps = 23/471 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L    ++L+  + + + I  +  V GI+ DSR I+  E F A++G ++DG++F   AV
Sbjct: 5   ISLKQLSNILELPETNLLAIFSEKTVTGITTDSREISDGEIFVALRGKNFDGYEFTEIAV 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KGA  ++V+ ++   I S +IP F V D L A  K+A   R +    +IA+TGSVGKTT
Sbjct: 65  EKGAIAIIVDREVPV-IASKNIPQFIVKDTLNAYQKIAHWWRNQLTIPVIAVTGSVGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   LS   K +    +YNN IGVP TL  +    D+ + E+ M   GEI  LT +
Sbjct: 124 TKELIAAVLSQRGKVHKTRANYNNEIGVPKTLLELDKSHDYAVIEMAMRAKGEIALLTEI 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP + +IT +  AH+      E IA+AK E+ E +       LN+D+        K   
Sbjct: 184 ARPTLGIITNVGTAHIGRLGSTEAIAAAKCELLEQMSPDTIAILNHDNPLLIETAHKVWQ 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T    G                 Q      L+ + +       G H A N L  L 
Sbjct: 244 GETLTYGLEGGD------------LVGQLIDAQTLRVEGINFPLPIPGRHNALNYLAALA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  D     + L+V  P        R         L+DE+YNA   SM AA+ +L 
Sbjct: 292 VAKVLNLDWTPLTEGLTVNLPSGRS----RRHQLPNDVLLLDETYNAGLESMIAALELLK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
           Q         IAVLG M E+G+ S  FH  + E +   NI H+ +         +     
Sbjct: 348 QTPGQR---HIAVLGTMKELGDHSPQFHRQVGETVKRLNIDHLLVLTDDPQAQEIAVGA- 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +     +T   L   +Q  +  GD ++ K+SNS G  R++  LL + P 
Sbjct: 404 DGVTTQCWQTHQALVQQLQEMIKPGDRILFKASNSVGLNRVVESLLNDQPV 454


>gi|237749173|ref|ZP_04579653.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
 gi|229380535|gb|EEO30626.1| UDP-N-acetylmuramyl pentapeptide synthase [Oxalobacter formigenes
           OXCC13]
          Length = 455

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 207/465 (44%), Gaps = 22/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   I G    +      +G+S D+R +     F A+KG ++D HDF+    +KG 
Sbjct: 4   TLGQLHLWING--SKMTADASFDGVSTDTRLVGAGNLFVALKGENFDAHDFLAELPKKGV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV          +  +P   V D   AL  +A   R      ++ +TGS GKTT KEM
Sbjct: 62  AAVVAERI----PENYPLPALIVADTRLALGDMAREWRRNFSIPVVGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +     +           G++NN IGVPLT+ RM  +    + ELGM+H+GE+ +L+ + 
Sbjct: 118 IATIFKTAFGEDGRLATSGNFNNDIGVPLTIFRMNENHRAAVIELGMNHVGEMAYLSDIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + ++      H      +  +A     +   L + GT     D+ + +L    +   
Sbjct: 178 QPTVGLVNNAQREHQEFMQTVLAVAEENGTVIRSLPENGTAVFPADEPYSDLW---TRYA 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + I +FG  K+A     ++K     + + ++ +GKS  V     G H  +N L     
Sbjct: 235 GARQIRTFGLGKDA-KVSGQYKNEDGSTSVLIESEGKSYSVRLATSGKHNVRNALAAAAC 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D  T +K L  F P  GR              LID++YNANP S++AAI VL++
Sbjct: 294 ARSAGIDWQTIVKGLEAFSPVHGR---LEKKNAFNGALLIDDTYNANPDSVRAAIDVLAE 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S    G+ I VLGDM E+G   + FH+++ E      ISH +  G        A   S 
Sbjct: 351 LS----GKGIFVLGDMGEVGNDGERFHVEVGEYAKERQISHFFTFGEMARFASKAYGNSG 406

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              + + M+ +   ++  L     V+VK S      R++N L+ +
Sbjct: 407 R--HFDNMNEMNAVLEQLLEPDMTVLVKGSRFMKMERVVNQLMNK 449


>gi|315174910|gb|EFU18927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1346]
          Length = 474

 Score =  254 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 230/469 (49%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I   + F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGDLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|70725956|ref|YP_252870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446680|dbj|BAE04264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score =  254 bits (647), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 208/466 (44%), Gaps = 16/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + + I         +  + G++IDSR+I     F   KG + DGH F+  A
Sbjct: 1   MIEV-TLQQIQEWIPCDIDSQYLRQTIKGVTIDSRAIKTNMLFIPFKGENVDGHCFVSQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG                 P+  VDD L AL +LA A        +I +TGS GKT
Sbjct: 60  LKDGAGASFYEKGHDIDDNVKG-PIIWVDDTLIALQQLAKAYLKHVNPKVIGVTGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L +  K     G+YNN IG+PLT+  + +D +  I E+GMS   EI  L++
Sbjct: 119 TTKDMIESVLHTEFKVKKTQGNYNNEIGLPLTILELDLDTEISILEMGMSGFHEIELLSN 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IAVIT I  +H+ +    E IA AK+EI  GL+K GT   + D+   E    K  
Sbjct: 179 IAEPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKKEGTFIYDGDEPLLEPHVKK-- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +      S G  ++           ++     +         +          NM    
Sbjct: 237 -IKHAKCLSVGLKQDNALVCEVEHSENDGIAFSINGNEHYKLPIL------GIHNMKNAA 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++I               +  +  G R    +     T+I+++YNA+P SMKAAI  L
Sbjct: 290 IAIAIGHELGLKYETIQHNINHVQLTGMRMERHITDDDITIINDAYNASPTSMKAAIDTL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQ+    EGR+I VL D  E+GE S+S H ++   L   NI  +   G     + D   +
Sbjct: 350 SQM----EGRKIIVLADSLELGENSRSMHEEVGAYLEGKNIHTLLTYGKDAKYISDIGGQ 405

Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + HV Y      L  ++ ++LV  D V+VK S       ++N L+
Sbjct: 406 FVDHVEYFIDKQQLTQYLINNLVANDKVLVKGSRGNKLEEVVNKLI 451


>gi|126729247|ref|ZP_01745061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
 gi|126710237|gb|EBA09289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Sagittula
           stellata E-37]
          Length = 477

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 178/477 (37%), Positives = 249/477 (52%), Gaps = 17/477 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT  +   A  G           +G+SID+RSIAP + F A+K    DGHDF+  A++K
Sbjct: 2   LWTAAEAAAATGGRV---ASDWVASGVSIDTRSIAPGDLFVALKAAR-DGHDFVAQALEK 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+   +      S  +  VDDV   L  L  AAR R    ++A+TGSVGKT+TK
Sbjct: 58  GAAAALVSR--IPEGVDNSEKLLLVDDVQTGLEALGEAARARFGGRVVAVTGSVGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS     +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L  + R
Sbjct: 116 EMLRTVLSEQGTVHAAEKSYNNHWGVPLTLARMPKDADFAVIEIGMNHPGEIAPLARMAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A++T +APAHL+ F  +E IA  KA IFEGLE  G    N D +   +L+ K+ A  
Sbjct: 176 PHVAMVTIVAPAHLAAFENLEGIAREKASIFEGLEPDGIAIYNGDLAVSGILRDKA-AET 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   SFG++     +L   +     +    +     +       G H A N +  + ++
Sbjct: 235 ARKSISFGETAGTHHRLTSVQVMDACTVATGRAWRVPLLFKVMVPGRHFAMNAMGVMAVI 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAAISV 359
           S L  D   A+ AL+ ++P  GRG R +  L+     L    ID++YN+NPAS+ AA+ V
Sbjct: 295 SALRLDRALAVNALAQWNPGAGRGLREQIRLDPVDDRLTLELIDDAYNSNPASLGAALEV 354

Query: 360 L------SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           L        +    +GRRIA LGDM E+G    + H  LA    +  I  V   G  + A
Sbjct: 355 LAAAGTHDHVGRRDKGRRIAYLGDMKELGAQEVTLHEALATSPWIEKIDLVHCVGPLMRA 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           L   LPR    H++ET D +   +   L  GDVV+ K S S G  R+++ + +   A
Sbjct: 415 LWMKLPREKRGHWTETADKMAEGVVRDLDAGDVVLAKGSLSMGLGRVVDAIRKMRQA 471


>gi|312952885|ref|ZP_07771746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|310629188|gb|EFQ12471.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0102]
 gi|315153132|gb|EFT97148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0031]
          Length = 474

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 225/469 (47%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I   +S       + QL+       +     ++    M       G +   N L+ +GI 
Sbjct: 257 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+ Y I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPYAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|284801185|ref|YP_003413050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284994327|ref|YP_003416095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
 gi|284056747|gb|ADB67688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5578]
 gi|284059794|gb|ADB70733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 08-5923]
          Length = 470

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    + +G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNIIGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|15675337|ref|NP_269511.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71903813|ref|YP_280616.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71910970|ref|YP_282520.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
 gi|13622518|gb|AAK34232.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes M1 GAS]
 gi|71802908|gb|AAX72261.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS6180]
 gi|71853752|gb|AAZ51775.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS5005]
          Length = 463

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|225028800|ref|ZP_03717992.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
 gi|224953884|gb|EEG35093.1| hypothetical protein EUBHAL_03079 [Eubacterium hallii DSM 3353]
          Length = 490

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 146/476 (30%), Positives = 237/476 (49%), Gaps = 22/476 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-KG 64
           T  D+++A  G  +       +   SIDSRS +    F  I G   D H FI  A++  G
Sbjct: 28  TIKDIVEACSGQLLCGDENKVIKEFSIDSRSGSEDSIFVPIIGERVDAHKFIDGALKING 87

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     +       G  + P   V D + A+ K+    R R    ++A+TGSVGKTTT+E
Sbjct: 88  ATF--TSEHDEPLEGFENKPWIKVADTVEAMQKVGTFYRNRMNLPVVAVTGSVGKTTTRE 145

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L+S KK +  IG+ N+ IGVPLTL+ +  + +  + E+GMS  G+I  LT+++RP
Sbjct: 146 MISTVLASQKKVFQTIGNQNSQIGVPLTLSHLTREDEIAVLEIGMSERGQIEKLTNMIRP 205

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++AV+T I  +H++     E I   K +I +GL + G +FLN DD F    + K      
Sbjct: 206 NVAVVTMIGVSHIAQLKTQENICLEKMDIVKGLPEDGMVFLNGDDKFLAPYRGKL----S 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMAQNMLMTL 300
              + +G  K  D++         Q+      +     K MEVV   +G H  +N L+ L
Sbjct: 262 HKTFFYGMDKACDYRAENVHVKDGQTIFHFFYKEGKVVKDMEVVLGTMGEHNVRNALVAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   +  D+  A KAL  FH +  +    +        TLID++YNA+P SMKA++SVL
Sbjct: 322 GVAHQMGLDMKAAAKALVTFHGQRQQMHTLK------SCTLIDDTYNASPDSMKASVSVL 375

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +    +GRRIA L DM E+GE  + +H ++ + ++   +  V   G     +   +  
Sbjct: 376 SSMEG-VKGRRIAALADMLELGEKEREYHYEVGKFIAGTQVDEVAAYGELSEEILKGVED 434

Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL-LLEEFPAIQ 472
           +     V + E+ D L  ++ + +   DV+++K+SN      +    L  E   ++
Sbjct: 435 NNERIVVKHFESRDALKDYLLTYVHPDDVLLLKASNGMKLKEIAEAFLQNEKKVLK 490


>gi|189485183|ref|YP_001956124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287142|dbj|BAG13663.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 466

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 135/458 (29%), Positives = 228/458 (49%), Gaps = 14/458 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL++ + G  +   P    NG+SIDSR+I   E +FA++G  YDGHDFI  A+ KGA 
Sbjct: 6   LKDLMRVVGGKFVKGNPGFSANGVSIDSRTIKKGEVYFAMQGARYDGHDFIKEAINKGAA 65

Query: 67  LVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTK 123
            VV + D +  +     S+ +   +D L +L + A + R + K   I  ITGS GKTTTK
Sbjct: 66  AVVCSKDKIDFVKSFPDSVSIIKTNDTLISLGEFAKSYRTKFKSIKIAGITGSNGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L    +   +T +  G++NN IG+PL++  +  D+++ +FE+G S  GEI+ L+ ++ 
Sbjct: 126 EILVSIFNRKGRTLSNKGNFNNRIGIPLSIFNLTSDIEYAVFEMGTSLRGEIKILSDILN 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT +  +HL  F   + +   K  +F+ +++TG I +N DD F       +    
Sbjct: 186 PDAGIITNVGFSHLETFISPKGVFEEKKVLFDNVKETGFIVINNDDEFLMT----APQYV 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + I +F     AD   +  K  S +   E+  +G S+++     G     N L  +   
Sbjct: 242 SRKIIAFALDVAADVCAKNIKLYSNKMDFEIFYKGTSVKIAMPAKGRFNVSNALAAVACA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 +D     +  F P      R    +      LI+++YNANP+SMK AI  +  +
Sbjct: 302 IGFGFSLDEIKCGIENFMPP---KMRMETLVTGTDVVLINDAYNANPSSMKKAIQAV--L 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +   +   VLGDM E+G+ S  +H +L + ++ +++S V L G      K+AL  + +
Sbjct: 357 QSYSGKKINLVLGDMLELGDKSADYHSELGKFINAHDVSSVHLLGEMSFYTKEAL-NTKN 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSCGFYRL 460
           V +S   D L   ++    + D V + K+S      ++
Sbjct: 416 VFHSRNSDSLLTQLKQIPAEDDCVFLFKASRGMKLEKI 453


>gi|270159079|ref|ZP_06187735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|289166085|ref|YP_003456223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Legionella longbeachae NSW150]
 gi|269987418|gb|EEZ93673.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Legionella longbeachae D-4968]
 gi|288859258|emb|CBJ13192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella longbeachae NSW150]
          Length = 441

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 130/443 (29%), Positives = 203/443 (45%), Gaps = 19/443 (4%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI IDSR +     F AI+G  +DGHDFI  A  +GA   VV+  +        I
Sbjct: 17  STELTGICIDSRELKSGSLFIAIRGERFDGHDFIKEAEARGAVAAVVSHRVEGVH----I 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V D + AL K+A A R      +IA+TGS GKTTTKEM+   L S   +++  G+ 
Sbjct: 73  PQFVVPDPIQALAKIAAAHRQNIHCPVIALTGSNGKTTTKEMIAAILPS--PSHSTKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG PL++ ++     + +FELG +H GEI     +V P + +I  IAPAH+  F  I
Sbjct: 131 NNHIGAPLSVFQLNSQHRYAVFELGANHPGEIAHTVAIVHPDVTLINNIAPAHVEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A AK EI +GL   GT  +N DD++            +     F     AD   +  
Sbjct: 191 DGVARAKGEIHQGLSSAGTAIVNDDDAYAHFWDELLLDKKVLR---FSIEHPADVYAQDV 247

Query: 264 KQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +  S+        +     ++     G H  +N L        +        + L++F  
Sbjct: 248 QLDSQGCGHFSLIVPNGRADIHLKVPGLHNVRNALAAAACCHAIGLSAKEIQQGLNLFSG 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR         +   T+ID++YNAN  S+  A+ VL++      G++I V GDM E+G
Sbjct: 308 VKGRLT---VLTGKNQSTVIDDTYNANLRSVLVALEVLAEHP----GKKIFVFGDMGELG 360

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             +   H ++        I  +   G       +A    +   Y  + + L   + + L 
Sbjct: 361 VWATQHHQEVGIAARRLGIDQLLCCGSKSRLAAEAF--GVGGEYFTSQEQLVQNLVAKLS 418

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
              VV+VK S S    ++++ L+
Sbjct: 419 ADTVVLVKGSRSSAMEKIVHQLV 441


>gi|255973919|ref|ZP_05424505.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255966791|gb|EET97413.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 457

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYT 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|224503175|ref|ZP_03671482.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes FSL R2-561]
          Length = 470

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|224499393|ref|ZP_03667742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes Finland 1988]
          Length = 466

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 13  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 72

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 73  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 130

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 131 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 191 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 246 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 305 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 362 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 420

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 421 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 464


>gi|139473556|ref|YP_001128272.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|134271803|emb|CAM30036.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 463

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYS 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|222153383|ref|YP_002562560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
 gi|222114196|emb|CAR42740.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus uberis 0140J]
          Length = 456

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 211/471 (44%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + +++ + ++   S+       +N I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LSLYEVAKVVEAQNSLSEFDDVPLNQIEFDSRKITKGDLFLPLKGER-DGHDFIDMAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V D L A   LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKEIPGK------PYLLVKDCLKAFQMLAQYYIEKMRLDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +
Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIAVVTLIGEAHLEFFGSREKIAEGKMQIIDGMDSHGILIAPGDPIIDPYLPENQMLIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        + ++        ++ +          +     G + A N ++   + 
Sbjct: 236 ----------FGDNQEIYVKDIQERKNSLTFTTNVLDRAITLPLSGKYNASNAMIAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  + D  I+AL      + R +  + A       ++ + YNANP +M+  +   S +
Sbjct: 286 KLLAVEDDDIIEALENIQLTKNRTEWKKAANGAD---ILSDVYNANPTAMRLILESFSSL 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           +P  +G++IAVL DM E+G  S   H  +   LS   I H+   G  + +L     +   
Sbjct: 343 TPENQGKKIAVLADMKELGPKSVELHQQIITALSPDKIDHLVFYGNDIESLAQLASQMYP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V++       +  D +   ++  L   D +++K SNS    +L+  L+
Sbjct: 403 IGKVYFFKKTEDQDQFDAMANHVKEILEANDYLLLKGSNSMHLDQLVEQLV 453


>gi|148259080|ref|YP_001233207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acidiphilium cryptum JF-5]
 gi|146400761|gb|ABQ29288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium cryptum JF-5]
          Length = 451

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 174/467 (37%), Positives = 244/467 (52%), Gaps = 17/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G  +         G+SIDSR+IAP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTIAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  +  
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLP-RGPFLSRLARR-- 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 229 ARDGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPAQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+         V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLAD-AVSGVADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++     L   ++++L  GDVV+VK S       ++  + ++
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450


>gi|254511155|ref|ZP_05123222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534866|gb|EEE37854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 464

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 169/467 (36%), Positives = 247/467 (52%), Gaps = 13/467 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +   A +G            G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTATEAAGATKGR---STTDWQATGVSIDTRTLQPGDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V+   +        P+  VDDV   L  L  AAR R+ A ++ +TGSVGKT
Sbjct: 56  LEKGAGAALVSR--IPEGVPEDAPLLIVDDVQTGLEALGHAARARTAARVVGVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L +  KT+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L H
Sbjct: 114 STKEMLASILETRGKTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAH 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+ ++TT+A  HL  F  +  IA+ KA +F+GL   GT  +N D     +L++++ 
Sbjct: 174 QARPHVGLVTTVAAVHLEAFDSVAGIAAEKAALFDGLTDGGTAIVNADIEHAGILRSRAQ 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G K +         D+ L   +Q ++    + ++    +       G H A N L  L
Sbjct: 234 ARGAKIVEF--GRMARDYTLTHVEQRADSLRAQGRVGDNEISFDVQSAGTHFAMNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAISV 359
                L  D+D AI  L  + P +GRG R   A  N     L+D+SYNANP SM    + 
Sbjct: 292 AACVELGVDLDQAIAGLRGWSPVKGRGVREVIALPNGARIELLDDSYNANPTSM---EAA 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++     RRIA LGDM E+G   Q+ H  +A+V ++  +  V   G  + AL  ALP
Sbjct: 349 LDVLAASAGQRRIAFLGDMKELGAQEQAMHAAIADVAAMAQVDQVHCIGPLMRALHQALP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 ++ET  G+ L +   + DGD V+ K S S    ++++ L +
Sbjct: 409 EGKRGLWAETSAGMALHLPELIRDGDAVLAKGSLSMALAQIVDGLRK 455


>gi|91791718|ref|YP_561369.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           denitrificans OS217]
 gi|91713720|gb|ABE53646.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella denitrificans OS217]
          Length = 457

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 141/470 (30%), Positives = 213/470 (45%), Gaps = 19/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +    +G      +  +S DSR+I     F A+KG  +D HDF   A
Sbjct: 1   MIEL-TLDALAQKLNAKHLG--ENLTIANVSTDSRAIPAACLFVALKGERFDAHDFAATA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  ++V  ++      L IP   V +   A+ ++    R       +A+TGS GKT
Sbjct: 58  IENGAKALLVERELA-----LDIPQLIVANSQKAMGEIGALVRDIVSPICVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEML   LS   +     G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMLASILSQGHQVLYTAGNFNNEIGVPLTLLRLSQADEYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  I  AHL  F  IE IA AK+EIF  L   G   +N DD+F EL+K K+ 
Sbjct: 173 LVRPRVALVNNIGSAHLEGFGSIEGIAEAKSEIFNHLSADGVAVINADDAFCELMKTKAK 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    +      +             +      +  QG+ + V     G H   N L   
Sbjct: 233 AFKQLSFSREANTNADIQATGLNMNAAGCYGFTIHYQGQQLAVQLPLAGIHQVSNALAAS 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   +   +  L+   P +GR + +      G   +ID+SYNANP+S+ AAI  L
Sbjct: 293 AMCLALGISLTDIVSGLARLAPVKGRMQPH----TLGRLLVIDDSYNANPSSVSAAIDWL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                + +G    VLGD+ E+G+ +   H  + +      I  ++  G        A   
Sbjct: 349 K----NRDGFCCLVLGDLGELGDNAAHLHAQVGQQAKEAQIDALFCCGSLSENTSLAFGS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEFP 469
             +      +  L   I+     G V V+VK S S    R++  LL  + 
Sbjct: 405 PHYAELPALLVELTSAIK--ANRGAVTVLVKGSRSARMERVVENLLNAYE 452


>gi|167772165|ref|ZP_02444218.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
 gi|167665963|gb|EDS10093.1| hypothetical protein ANACOL_03540 [Anaerotruncus colihominis DSM
           17241]
          Length = 452

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 205/461 (44%), Gaps = 18/461 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  AI         +G V+ +S D+R++ P   F A++G  +DGHD+I  A++ G
Sbjct: 1   MTLKEIAAAIGAD---GTFEGAVDCVSTDTRALPPGCLFVALEGERFDGHDYITAALRGG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   V +       G    PV  V +   AL  LA A R R     + ITGSVGKTTTK+
Sbjct: 58  AACAVAHERRDYGAG----PVMYVKNTQRALMDLARAYRARFDIHCVGITGSVGKTTTKD 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+  A+S+  +T    G+ NN IG+P TL  +    +  + E+GM   GEI  L  + RP
Sbjct: 114 MIAAAVSAGFQTLKTEGNLNNEIGLPKTLLGLTRGHEAAVVEMGMQGFGEIAALADVARP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+      E I  AK E+ + L     +FL  DD     L  K     +
Sbjct: 174 TLGVITNIGVSHIEQLGSRENIMKAKLELADALPDGAPLFLCGDDD----LLKKVSIPRL 229

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +   ++          ++   Q+   +Q  G  +      IG H  +N +   G+  
Sbjct: 230 DVRFYGVENPACALHAADIREADAQTAFTLQYPGGQVGATIPCIGLHNVRNAVAACGVGM 289

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +    AL+ + P        +  ++ G  T++++ YNA+P SM+AA++ LS + 
Sbjct: 290 ALGIPAEKCAAALAAYVPS----GMRQRVVHWGSVTVVEDCYNASPDSMRAALTTLSAMR 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
               GRRIAVLG M E+G  SQ+ H ++    +   +  +   G              + 
Sbjct: 346 --CAGRRIAVLGGMLELGAYSQAAHREVGRAAAGAGVDLLLAYGGDACYYSQGAKEGGVE 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    L   ++ +L  GD+V VK S       ++  L
Sbjct: 404 SETFSDKADLLARLRGALGPGDIVWVKGSRGMRMEEVLQGL 444


>gi|127514385|ref|YP_001095582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           loihica PV-4]
 gi|126639680|gb|ABO25323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella loihica PV-4]
          Length = 456

 Score =  253 bits (646), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 142/472 (30%), Positives = 222/472 (47%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL    +L + +    IG      V+ +S DSR +  Q  F A+KG  +D HDF   A
Sbjct: 1   MIPLK-LSELAKVLNAKHIGD--DLSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++      ++ P   V +   A+ ++    +       +A+TGS GKT
Sbjct: 58  VMDGASALLVEREL-----PIAAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS+  +     G++NN +GVPLTL R+    ++G+FELG +HLGEI + + 
Sbjct: 113 SVKEMVATILSTQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGANHLGEINYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +A AK+EIF  L K G   +N DD+F ++++  + 
Sbjct: 173 LVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMRRAAA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +    +  S G   +                  +    +   V     G H   N L   
Sbjct: 233 SHTQLSFSSQGNPADVSADELSADA-LGCYRFRIAYLDEQRTVSLPLSGRHQVSNALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L   +D  ++ L    P +GR +  R     G F LID++YNANPAS+ AAI  L
Sbjct: 292 SICLALGLSLDEIVQGLMRLQPVKGRMQPTR----LGRFLLIDDTYNANPASVGAAIDWL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +I    EG R  VLGD+ E+G+ +   H  L E      I  ++  G    A  +A   
Sbjct: 348 QEI----EGNRCLVLGDLGELGDNASLLHRQLGEKAKQQGIDALYSLGELSRASSEAFA- 402

Query: 421 SIHVHYSETMDGLFLFIQ---SSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                +   +D L + +    + L     V+VK S S    R++  L+  F 
Sbjct: 403 ---GKHFTDLDALVVDLVSYFNQLTGKVTVLVKGSRSARMERVVEALIAAFE 451


>gi|255522055|ref|ZP_05389292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 457

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     ++
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|290892952|ref|ZP_06555942.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290557528|gb|EFD91052.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 470

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|257415412|ref|ZP_05592406.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|300859702|ref|ZP_07105790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|257157240|gb|EEU87200.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|300850520|gb|EFK78269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 457

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|167760758|ref|ZP_02432885.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
 gi|167661645|gb|EDS05775.1| hypothetical protein CLOSCI_03143 [Clostridium scindens ATCC 35704]
          Length = 457

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 204/472 (43%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A +G   G   +    V G+ IDSR +     F AI G + + H FI 
Sbjct: 1   MKNL-TLENITKACKGVYHGDESKLGREVGGVVIDSRKVQKDYLFVAIDGENVNAHQFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  V+ + D    +G        V+    AL  +A   R      ++ ITGSVG
Sbjct: 60  DTIEKGALCVISHED----LGDTDFSYILVESTGQALLDIAKLYRDSFDVKVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   ++   K +  IG++NN  G+PLT+  +  D    I E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVVAQKYKVHKTIGNFNNEWGLPLTIFELNEDHQVAILEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  GTI  N DD     L ++
Sbjct: 176 SSVASPDICVITNIGVAHLEFFKTREGILQEKSKMIQDMKDGGTIIFNGDDD----LLSQ 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +   T   FG   N  F     +      +   + L  +        +      +  
Sbjct: 232 AGPIKGATPILFGLGDNCQFYADNIQPMGLRGTSCTIHLPDEYSFECVVPLPGTHMISNA 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    V          IKA     P           +      ++D+ YNANP SMKAAI
Sbjct: 292 LAGAAVGYTLHLTSEEIKAGIEGLP---SIPGRNNIIKTDRLIILDDCYNANPVSMKAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL        GR++AVLG+M E+G   +  H ++ E  + + I  V   G     L D 
Sbjct: 349 DVLDMAI----GRKVAVLGNMGELGNNEKVLHREVGEYAAAHGIDLVCGIGHLAKELVDG 404

Query: 418 L---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 S    + E        ++  + DGD V+VK+S+      ++  L  
Sbjct: 405 ATNGSSSTRGLWFENKADFLDAMKDLIKDGDNVLVKASHGMDLTTIVEALKN 456


>gi|311031129|ref|ZP_07709219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. m3-13]
          Length = 453

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 215/465 (46%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QK 63
           T   + +  QG  I        V G+S D+R     + +  I G +++GH F+  A+ +K
Sbjct: 5   TLKQIQEMAQGQPISSEYSAIVVEGVSKDTREDMSGKLYIPIIGENFNGHAFVRDAIEKK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       D         + +  VDD + AL  LA + R +    ++ ITGS GKTTTK
Sbjct: 65  GAVASFWQKDQPE--PPTDLNLIVVDDTIEALQHLASSYRNQIGMKVVGITGSNGKTTTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+T  L +  + +   G+YNNHIG+PLT+  M  D +  + E+GMS  GEI  L+ + +
Sbjct: 123 DMVTSVLETTFRVHKTAGNYNNHIGLPLTILSMKEDTEVAVLEMGMSGRGEIELLSSIAK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AVIT I  +H+ +    E IA AK EI  GL++ G + +N D+             G
Sbjct: 183 PDAAVITNIGESHMQDLGSREGIAEAKLEIAAGLKQDGKLIINGDEPLLT-----DRVGG 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG   N D+Q +        +          +E   + I    A N+   L  +
Sbjct: 238 KTNVIPFGLKANNDYQAKDIMLKGIGT-------HFIIEETEYFIPVLGAHNVTNALAAI 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +      +              G R       G +T+I+++YNA+P SM+AA+ +L  +
Sbjct: 291 IVGELFGVSEENRKKGLEQLVITGMRNEVVETSGGWTVINDAYNASPTSMRAALDLLGSL 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
              G G++IAVLGDM E+G++ ++FH ++ + +   N+ +V+  G   + +         
Sbjct: 351 --DGYGKKIAVLGDMLELGDMEKTFHHEIGQYVKDKNVDYVFTFGALGMEIAKGAQEVME 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             HV        L   ++  L +GDVV+VK S       +I  + 
Sbjct: 409 PSHVKPFMNKQELTRELRPLLENGDVVMVKGSRGMKLEEVIEGIK 453


>gi|167647633|ref|YP_001685296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
 gi|167350063|gb|ABZ72798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Caulobacter
           sp. K31]
          Length = 472

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 182/456 (39%), Positives = 252/456 (55%), Gaps = 16/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G  +G        G+SIDSRS+ P + F A+ G   DGH+F++    
Sbjct: 14  PLWTADEIAAATGGQVLG---DFEATGVSIDSRSLEPGDLFVALTGAR-DGHEFVVQTAD 69

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
           +GA   +++  +        IP   V+D   AL +L VAAR R  +    A+TGSVGKT+
Sbjct: 70  RGAAGALISKPVA-------IPAVLVEDTFLALERLGVAARERAPQVRRGAVTGSVGKTS 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +   L    K +A + SYNNHIGVPLTLARMP D    +FE+GM+H GEI  L+  
Sbjct: 123 VTRAVEAGLRRAGKAHASVKSYNNHIGVPLTLARMPRDTQRAVFEVGMNHSGEITPLSGF 182

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +RPH   ITT+ P HL NF  G E +A AKAEIF G+E  G   LN D+ +F LLKA++ 
Sbjct: 183 IRPHAVAITTVGPVHLENFADGEEGVARAKAEIFAGIEPNGVAVLNADNPWFPLLKAEAE 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +   SFG  +    QL ++      + +   L+G ++       G H   N L  L
Sbjct: 243 KAGAEVW-SFGAGEGVTAQLTEFAAGPNGATITAVLRGDTIHFPILQTGVHWGLNSLCVL 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L  D +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L
Sbjct: 302 LMLEALDVDRETALAALAEFEPIEGRGAERVVHVPGGTFTLVDESYNANPISMQAALKTL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI VL DM E+G LS  FH DLA  ++  +I  V+ +G  + +L +ALP 
Sbjct: 362 G--AREVAGRRIVVLTDMLELGPLSARFHSDLATPIAGADIDLVFCAGPLMKSLWEALPP 419

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+E+   L   + S++  GDVV+VK SN   
Sbjct: 420 TRRGGYAESAAELAPQVVSAIRAGDVVMVKGSNGSR 455


>gi|257086187|ref|ZP_05580548.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256994217|gb|EEU81519.1| conserved hypothetical protein [Enterococcus faecalis D6]
          Length = 457

 Score =  253 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|306830915|ref|ZP_07464077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325977798|ref|YP_004287514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|304426938|gb|EFM30048.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|325177726|emb|CBZ47770.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 454

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI V+T I  AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++        +  +          +     G + A N ++   + 
Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D  ++AL        R +  + A       ++ + YNANP +M+  +   S+I
Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y       +  D +   +Q  L   D +++K SNS    +++  L E
Sbjct: 403 IGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|29375433|ref|NP_814587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255971300|ref|ZP_05421886.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256761604|ref|ZP_05502184.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854306|ref|ZP_05559670.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957294|ref|ZP_05561465.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256959972|ref|ZP_05564143.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257077732|ref|ZP_05572093.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257083762|ref|ZP_05578123.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257418443|ref|ZP_05595437.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257421094|ref|ZP_05598084.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781260|ref|ZP_06746606.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
 gi|29342893|gb|AAO80657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis V583]
 gi|255962318|gb|EET94794.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256682855|gb|EEU22550.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709866|gb|EEU24910.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947790|gb|EEU64422.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256950468|gb|EEU67100.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256985762|gb|EEU73064.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256991792|gb|EEU79094.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257160271|gb|EEU90231.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162918|gb|EEU92878.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451596|gb|EFG20052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis PC1.1]
          Length = 457

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I   +S       + QL+       +     ++    M       G +   N L+ +GI 
Sbjct: 240 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|94988834|ref|YP_596935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94992725|ref|YP_600824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94542342|gb|ABF32391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94546233|gb|ABF36280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 463

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 213/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELP------GTPHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L+  L+
Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVERLV 453


>gi|52143257|ref|YP_083572.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase.
           [Bacillus cereus E33L]
 gi|51976726|gb|AAU18276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus cereus E33L]
          Length = 454

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 210/467 (44%), Gaps = 21/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  +     L + I G           ++G+ IDS+++     F  I      DGH+++ 
Sbjct: 1   MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHEYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +             IP+  VDD L AL +LA   R      +I ITGS G
Sbjct: 58  EAMDNGAISSLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT K+++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L
Sbjct: 116 KTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P +AVIT I  +HL      +EIA AK EI +GL + G    N D+     L ++
Sbjct: 176 SRIAQPDVAVITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LFSR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           ++        +FG+    D      +        ++       +V  HG        + +
Sbjct: 232 NNKTSGVNCKTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGI 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +              K             R++    +  FT+I++++NA+P+SMKAAI 
Sbjct: 292 AV-----GQFYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +++ + +   I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +  
Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKKAETYHREIGKMLNEESIQYVFTYGELAKIVAEEA 404

Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +      V   +    +   +   +   DVV++K S       ++ 
Sbjct: 405 SKKYDTGKVQSFDNKAEIAEEVLKVITKKDVVLLKGSRGMALEEIVQ 451


>gi|254832179|ref|ZP_05236834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes 10403S]
          Length = 457

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|229548783|ref|ZP_04437508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|229306091|gb|EEN72087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis ATCC 29200]
 gi|315155151|gb|EFT99167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0043]
 gi|327534428|gb|AEA93262.1| exopolyphosphatase [Enterococcus faecalis OG1RF]
          Length = 474

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 150/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I   +S       + QL+       +     ++    M       G +   N L+ +GI 
Sbjct: 257 ITFGFS------QESQLQGIVTNEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|288904863|ref|YP_003430085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
 gi|288731589|emb|CBI13144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptococcus gallolyticus UCN34]
          Length = 454

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI V+T I  AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++        +  +          +     G + A N ++   + 
Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFMTNVIDRPITLPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D  ++AL        R +  + A       ++ + YNANP +M+  +   S+I
Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y       +  D +   +Q  L   D +++K SNS    +++  L E
Sbjct: 403 IGKVYYFKKTADEDQFDAMLETVQKVLQPADQILLKGSNSMQLAKVVEALEE 454


>gi|217965049|ref|YP_002350727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|217334319|gb|ACK40113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Listeria
           monocytogenes HCC23]
 gi|307570390|emb|CAR83569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes L99]
          Length = 470

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + + +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLAEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|320011283|gb|ADW06133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 472

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 198/476 (41%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    +      V G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIAGIVGGQPHDVPDLSATVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+ GA  V+           + +P   VDDV+ AL  LA AA  R   T++A+TGS G
Sbjct: 60  RAVEAGAVAVLAARP-------VGVPAIVVDDVVAALGALARAAVERLGTTVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQILERKAPTVWTPGSLNNEIGLPLTALRATAETRHLVLEMGARGIGHIEYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AH+  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 AGLTPPRIGLVLNVGSAHIGEFGSREAIAQAKGELVEVLPEDGAAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     +  FG++ +AD +    +   +               V   +          
Sbjct: 233 TKA----RVILFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLY-GEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SMKAA+ 
Sbjct: 288 LAAAAVAHELGMSVTEIADALSGAGTLSRWRMEVTERPDGVTVVNDAYNANPESMKAALR 347

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+ +        GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALAAMGKARQAAGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGQEASWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|19746379|ref|NP_607515.1| D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS8232]
 gi|94990737|ref|YP_598837.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|19748577|gb|AAL98014.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes
           MGAS8232]
 gi|94544245|gb|ABF34293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 463

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 214/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|307278458|ref|ZP_07559533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
 gi|306504964|gb|EFM74159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0860]
          Length = 474

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYT 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|83942757|ref|ZP_00955218.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
 gi|83846850|gb|EAP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. EE-36]
          Length = 478

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 162/476 (34%), Positives = 244/476 (51%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A
Sbjct: 1   MS-LWTAKEAESATGGRAIG---DWSCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V    V    + + P+  V+DVL AL  L  AAR R++A ++A+TGSVGKT
Sbjct: 56  LEKGAGAALVTH--VPEGVAENAPLLIVEDVLRALEALGAAARARTQAKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  
Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+ 
Sbjct: 174 MAKPDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAV 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++ +          ++L   +   + + +     G  +       G H A N L  L
Sbjct: 234 DRRLREVEF--GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                + AD+  A  +L  + P +                    LID+SYNANP SM AA
Sbjct: 292 ASAQAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAA 351

Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V         I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  
Sbjct: 352 LEVLAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L D LP      ++ET   L   + S L  GDVV+ K S S     +++ + +
Sbjct: 412 MKSLYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|329769754|ref|ZP_08261155.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
 gi|328838116|gb|EGF87734.1| hypothetical protein HMPREF0433_00919 [Gemella sanguinis M325]
          Length = 453

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 120/467 (25%), Positives = 202/467 (43%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    DL Q +    I IV    + GI+IDSR +   + F    G + DGH++I  A
Sbjct: 1   MKYL--VKDLEQILNAKKINIVENKEITGIAIDSRKVKEGDLFIPFLGENVDGHNYIESA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   +   +   S  +    +  V+D   A+  LA        A IIAITGS GKT
Sbjct: 59  FEKGAAASLSLKEDFTSDNN----IIYVEDSYVAIQALAKHYLDSLNAKIIAITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+++T  L +  K +   G++NN +GVP+T+   P D +  + E+G    G++ FL+ 
Sbjct: 115 TTKDIITGLLETKFKVHKTQGNFNNELGVPITILAAPEDSEILVLEMGADGFGQLDFLSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P   VIT I  +H+  F   E IA AK EI  G++K G    N D+   + L  KS+
Sbjct: 175 LVEPDYTVITNIGESHIEFFGSREGIAKAKFEITNGMKKDGFFVYNGDEVLLKDLVDKSN 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S G++   +  L  +    +    ++ L  +                  +  
Sbjct: 235 IGAT----SCGENDYNNIILENYTITRDHIDFKLNLSDEKFTTKL----KGKHNLFNIMF 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                    +       ++    E    R           +I+++YNA+P SMKA++ V+
Sbjct: 287 ATAIAEKLGLSIDEIRKAIEKTSEITHMRLESIPYGKDSLIINDAYNASPTSMKASVDVV 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVWLSGFHVLALKDAL 418
           S         +  VLG M E+G     +H ++ E +  +  +I  V   G     + D +
Sbjct: 347 SGFDDFD--YKTLVLGSMFELGSKEVQYHSEVGEYISNNSKDIDLVISVGDLAKNITDNI 404

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               I   +  + + +  +++ +    +V++ K+S S     +I  +
Sbjct: 405 TNSEIKKLHFSSNEEVSNYLKENKHANEVILFKASRSMKLESIIEEI 451


>gi|47094862|ref|ZP_00232476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258612113|ref|ZP_05267563.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293596486|ref|ZP_05261552.2| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
 gi|47016744|gb|EAL07663.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|258608454|gb|EEW21062.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes F6900]
 gi|293589486|gb|EFF97820.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes J2818]
          Length = 470

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  +L DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 366 SSGK-PKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 468


>gi|300788101|ref|YP_003768392.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
 gi|299797615|gb|ADJ47990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Amycolatopsis mediterranei U32]
          Length = 500

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 192/498 (38%), Gaps = 46/498 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++   + G      P   V G +  D+R +     F A+ G   DGHDF   
Sbjct: 1   MIVL-SLAEIADVVGGRLHRADPGAQVTGTVEFDTRELTSGGLFVALPGEKVDGHDFAAQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----------------- 102
           AV+ GA  V+   +       +  P   V   L A      +                  
Sbjct: 60  AVEAGAVAVLAARE-------VDAPAIVVP-PLAAGEAHERSVALTGDKDGSGAAVLAAL 111

Query: 103 ----------RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                         + T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T
Sbjct: 112 AKLARYVVQRLAEGELTVVGVTGSSGKTSTKDVIAQLLEPLGPTIAPPGSFNNELGHPWT 171

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             R   +    + EL     G I  L  +  P I V+  +  AH+  F   E IA  K E
Sbjct: 172 ALRAGAETRHLVLELSARGPGHIAHLAAIAPPKIGVVLNVGSAHVGEFGSREGIAKTKGE 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E L + G   LN DD     + +++ A  +    S      A+      +    ++  
Sbjct: 232 LVEALPEDGVAVLNLDDPLVAAMASRTKARVVFVGESPSAQVRAENITLDDEA---RASF 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +        V     G H   N L    +   L A  +    A  +   +    +R   
Sbjct: 289 RLITPAGEAGVKLPLHGEHHVGNALSAAAVALELGATPEEI--ATRLSALERRSARRMEV 346

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T++++S+NANP SM+A +  L+ ++     R  AVLG M E+G  S + H ++
Sbjct: 347 VTRPDGVTILNDSFNANPESMRAGLKALAAMTRETGRRSWAVLGVMGELGADSVTAHDEI 406

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++   NI+ + + G    A+                   ++     +   L  GDVV+
Sbjct: 407 GRLVVRLNIAKLVVIGPEAAAMHQGAHQEGSWGEESTLVPDVEAAAALLHDQLRPGDVVL 466

Query: 449 VKSSNSCGFYRLINLLLE 466
           VK+S + G +R+   LLE
Sbjct: 467 VKASKAAGLWRVAEALLE 484


>gi|328475552|gb|EGF46311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes 220]
          Length = 457

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|256821910|ref|YP_003145873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
 gi|256795449|gb|ACV26105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Kangiella koreensis
           DSM 16069]
          Length = 465

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 214/466 (45%), Gaps = 15/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   + +  +G   G      +N +  DSR       F A+KG ++DGH F+  A
Sbjct: 1   MIPL-SLTTIAEVAKGTLQG--SDIIINKVITDSRVDCRDALFIALKGENFDGHQFVEKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  ++V       +   ++P   V D   AL  +A   R +    +I ITGS GKT
Sbjct: 58  KLQGAKALLVEH-----LVESNLPQVIVSDTEKALGLVAKYVRDQVNPLVIGITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L       A  G++NNHIGVPLTL R+     + + E+G +H+GEI +   
Sbjct: 113 TVKEMVASILRQKGNLLATQGNFNNHIGVPLTLLRLKETDQYAVIEMGANHIGEIAYCAS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P ++VI  +  AH+  F  +E +A AK+EI++ L + GT  +N D +F +    +  
Sbjct: 173 LAKPDVSVINNVEAAHIEGFGSVEGVAKAKSEIYQALSEEGTAVINLDSNFADQWIEQFA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L   T+     +       +     +    M+    G S  +        M       +
Sbjct: 233 GLQKITVSRHKDANFVADNCQTQDNGNVIFTMQHTQDGNSQSISVQLPVPGMHNVSNALV 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                  A  D  I  + +      +G+  +     G   +ID++YNA+ AS+KAAI  L
Sbjct: 293 AAALASAAGADMEIIKVGLETMVSVKGRLNQFKAANG-ALIIDDTYNASVASVKAAIDYL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +S    G ++ VLGDM E+G+ S+ +H ++ E     NIS + +SG  V    +A   
Sbjct: 352 TSLS----GTKVLVLGDMAELGDESEQYHREVGEYAKENNISQLLVSGHWVKYSTEAF-- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + E  + L   + S +     ++VK S S    ++++ L+ 
Sbjct: 406 GDKAQWFENKELLVSHLNSVIQSDYKILVKGSRSAQMEQVVDALVA 451


>gi|47092062|ref|ZP_00229855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300764064|ref|ZP_07074059.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
 gi|47019502|gb|EAL10242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|300515054|gb|EFK42106.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL N1-017]
          Length = 470

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+      +  PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 366 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 468


>gi|323480024|gb|ADX79463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis 62]
          Length = 457

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V       +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVD--VPQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|121602462|ref|YP_989232.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
 gi|47779258|gb|AAT38526.1| MurF [Bartonella bacilliformis]
 gi|120614639|gb|ABM45240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bartonella bacilliformis KC583]
          Length = 472

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 201/472 (42%), Positives = 277/472 (58%), Gaps = 3/472 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL A+ G +IG +P+    G+SIDSR++   + FF IK    DGHDF   A
Sbjct: 1   MTVLWDQKILLSAMDGVAIGCLPE-SFPGVSIDSRTLVKGDIFFCIK-NRLDGHDFAAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GAG +V+  + +  +  LS P+  V DVL AL +LA  AR RSKA IIA+TGSVGKT
Sbjct: 59  LARGAGALVIAQNRLDDMKQLSAPLIVVPDVLKALEQLAQEARKRSKAKIIAVTGSVGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE L   L ++ K +A I S+NN  GVPLTLA+MP+D D+GIFE+GM+H  EIR L  
Sbjct: 119 TTKEALKKVLQTVGKVHANIASFNNCWGVPLTLAQMPLDSDYGIFEIGMNHKDEIRSLVK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV PH+A+IT IA  H+  F  +EEIA AKAEIFEGL+  G   LN D  FF  L  K+ 
Sbjct: 179 LVCPHVALITHIAAGHIEFFKNLEEIADAKAEIFEGLDNKGIAILNADSDFFSYLVQKAE 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +K I SFG+S  AD+Q ++       S M V+  G+ + +     G H+  N L  +
Sbjct: 239 QCNVKKILSFGESDCADYQAKEICLLENHSCMTVRFSGRDVMIKIGAPGRHIVDNSLGVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISV 359
                + AD+     ALS F   +GRG RYR +L  G    + + SYNANP SM+AA+++
Sbjct: 299 AACDAVGADLSRIAPALSHFSLPQGRGTRYRLSLPDGEEFHLIDESYNANPVSMRAALNL 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS       GRRIAVLGDM E+G  S+ FH  L + +     + V+L G  +  L   L 
Sbjct: 359 LSIGPVGACGRRIAVLGDMLELGVYSEEFHRALVKPICTSGANPVFLFGKEMKFLAVDLS 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             + VHY+E ++ +   I + +  GD+++VKSS+S     ++   L+ +  I
Sbjct: 419 SYVEVHYAEHVEEILPLIFTEISKGDLIIVKSSHSTHSSHIVAAFLDRYKVI 470


>gi|313905745|ref|ZP_07839105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
 gi|313469452|gb|EFR64794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Eubacterium
           cellulosolvens 6]
          Length = 465

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 125/476 (26%), Positives = 204/476 (42%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +   G   G        V  I+ DSR ++    F AIKG   DGH FI 
Sbjct: 1   MKNL-TLRNITEVCGGTYHGPEGCLDTEVTEITTDSRKVSEGCLFVAIKGEKVDGHRFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +   GA   +       +       V  V   L A+  +A     +  A ++ I GSVG
Sbjct: 60  GSFADGALAALAE----VAPAETDKAVILVPSTLQAIKDIAEFYLAQLPADLVGIIGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   L+   +T    G++NN +GVPLT  RM  + + G+ E+G++H GE+  L
Sbjct: 116 KTSTKEMVAAVLAQKYRTLKTEGNFNNEVGVPLTAFRMREEDEIGVLEMGINHFGEMHRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   V T +  AHL      + I  AK+E+F+ +++ G + +N DD     +   
Sbjct: 176 AKITRPDTVVFTNVGTAHLEFLGSRDGILKAKSEVFDFMDEKGHVIVNGDDDKLSTISEV 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                ++         + +            E     +  +  S EV+    G HM  N 
Sbjct: 236 HGVAPVRFGIGEQGYSHPNDVWADGIVSHGLEGISCVIHTEAGSFEVMIPSSGRHMIYNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +  +    ++     +  + P  GR       +    +T+ID+ YNANP SM   
Sbjct: 296 LAGTAVGLVYGLTLEQIRSGIESYMPLSGRF----HIIKGDSYTVIDDCYNANPGSM--- 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 I     GRR+A+LGDM E+GE  +++H ++    +   I  +   G    A+  
Sbjct: 349 -KASISILKEALGRRVAILGDMGELGEKEKAYHEEVGAYAAEQGIDLICCVGALSEAMAK 407

Query: 417 AL--------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A              V +  T++ L       L   D ++VK+S++ GF R+++ L
Sbjct: 408 AAVDYMETHPEAHCLVRHYPTVEALMDDCGEILEKNDTILVKASHAMGFGRIVSGL 463


>gi|315145186|gb|EFT89202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2141]
 gi|315163094|gb|EFU07111.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0645]
          Length = 474

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|227891792|ref|ZP_04009597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866357|gb|EEJ73778.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 456

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 218/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  GA 
Sbjct: 5   LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+M 
Sbjct: 64  ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +
Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+     L         + 
Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +I 
Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              VD   KAL+ F     R +            ++ + YN+NP ++K  +    Q+   
Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
            EG+RI VLGDM E+GE +   H DLA+ ++   I  V+L G  +  L + L        
Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIDSVYLCGELMGYLAEKLREKFDETQ 412

Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H+   + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 413 IHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|315027033|gb|EFT38965.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2137]
          Length = 474

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAKLTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|218438969|ref|YP_002377298.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
 gi|218171697|gb|ACK70430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7424]
          Length = 454

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 138/462 (29%), Positives = 211/462 (45%), Gaps = 23/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L+   G+   I+ +  + GIS DSR I P E F A++G  +DGH+F   AV+KGA 
Sbjct: 10  ISKILEISPGNFPVIISKKPITGISTDSRYIKPGEIFVALRGDKFDGHEFAEVAVEKGAT 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++++  +     +  IP F V++ L A  ++A   R + +  IIA+TGSVGKTTTKE++
Sbjct: 70  ALILDKKLSVLSTNE-IPQFIVNNTLKAYQQIAQWWRNQFQIPIIAVTGSVGKTTTKELI 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+  K +  IG+YNN IGVP TL  +     +G+ E+ M   GEI  LT + RP I
Sbjct: 129 AAVLSTAGKVHKSIGNYNNEIGVPKTLLELDHTHHYGVIEMAMRAKGEISLLTEITRPTI 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT +  AH+      E IA AK E+   + +     LN+D+S      +        T
Sbjct: 189 GVITNVGTAHIGRLGSQEAIAEAKCELLAQMSQDSIAILNHDNSLLLETASTFWQGKTIT 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               G               S Q      L+ +  E      G H A N L  L +  +L
Sbjct: 249 YGLEGGD------------LSGQLINPQTLRVEGKEFPLPLPGRHNALNYLAALAVAKVL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D     + L+V  P        R         ++DE+YNA   SM   ++ L  +   
Sbjct: 297 DLDWTPLTEGLTVNLPSGRS----RRHQLPNNILILDETYNAGLESM---LAALQLLKET 349

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHV 424
              R IAVLG M E+GE S  FH  + + +    I H+ +         +       +  
Sbjct: 350 PGKRHIAVLGTMKELGERSPQFHHQVGKAVKDLGIDHLVVLVNDPQAEHIAAGA-DGVAT 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +T   +  ++Q  +  GD ++ K+SNS    R++N L+ 
Sbjct: 409 SCFKTHQEVVNYLQGLIKSGDRILFKASNSVELNRVVNDLIN 450


>gi|16802897|ref|NP_464382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
 gi|16410259|emb|CAC98934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes EGD-e]
          Length = 457

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|227520090|ref|ZP_03950139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227554957|ref|ZP_03985004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229546688|ref|ZP_04435413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|293388800|ref|ZP_06633293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|307267924|ref|ZP_07549312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|307275146|ref|ZP_07556298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|307286654|ref|ZP_07566740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|307290779|ref|ZP_07570674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|312907061|ref|ZP_07766057.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|312978683|ref|ZP_07790410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|227072434|gb|EEI10397.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX0104]
 gi|227175900|gb|EEI56872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis HH22]
 gi|229308194|gb|EEN74181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis TX1322]
 gi|291081957|gb|EFE18920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis S613]
 gi|306498160|gb|EFM67682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0411]
 gi|306502132|gb|EFM71416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0109]
 gi|306508174|gb|EFM77292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX2134]
 gi|306515565|gb|EFM84092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4248]
 gi|310627046|gb|EFQ10329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 512]
 gi|311288390|gb|EFQ66946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis DAPTO 516]
 gi|315029212|gb|EFT41144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4000]
 gi|315032371|gb|EFT44303.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0017]
 gi|315034369|gb|EFT46301.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0027]
 gi|315148005|gb|EFT92021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX4244]
 gi|315158765|gb|EFU02782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0312]
 gi|315165080|gb|EFU09097.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1302]
 gi|315167891|gb|EFU11908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1341]
 gi|315574116|gb|EFU86307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309B]
 gi|315581763|gb|EFU93954.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0309A]
 gi|329575932|gb|EGG57453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1467]
          Length = 474

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|170720126|ref|YP_001747814.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
 gi|169758129|gb|ACA71445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida W619]
          Length = 455

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 207/464 (44%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L  A+    +G       +G+SIDSRS+   E F A+ GP +DGHD++   
Sbjct: 1   MLKPMTLSQLTAALSARLVG--ADASFSGVSIDSRSVGAGELFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++     ++ +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  QAKGAVAALVEREVA----NVDLPQLVVADSRLALGQLGALNRAGYDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +       + ELG S +GEIR+   
Sbjct: 115 TVKEMLACILRTRGPVHATRGNLNNDLGAPLTLLEIAPQHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G E+I  AK EI EGL + GT  LN DD  F + KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGTAILNLDDKAFAIWKARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  + +        +        +         +   G S+ V  + +G H   N L   
Sbjct: 235 AHKVISFARSDARADFHATDIG-RDARGCPSFTLHGAGASVAVQLNVLGEHNVSNALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +      L+   P +GR       +      +ID+SYNANP SM AAI +L
Sbjct: 294 AAAHAVGLSLSGIAAGLNAMQPVKGRTVAQ---IAPSGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGTNMTHAVKAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   +++       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIEAVRAETASNTTILIKGSRSAAMENVVAAL 447


>gi|21220568|ref|NP_626347.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces coelicolor A3(2)]
 gi|256788293|ref|ZP_05526724.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces lividans TK24]
 gi|289772187|ref|ZP_06531565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
 gi|5689960|emb|CAB51997.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Streptomyces
           coelicolor A3(2)]
 gi|289702386|gb|EFD69815.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces lividans TK24]
          Length = 471

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 124/473 (26%), Positives = 186/473 (39%), Gaps = 19/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G    I      V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MITL-SLAEIAEVVGGRMHDIPDASAEVTGPVVRDSREAGPGSLFVAFVGERADGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   VDDV  AL  LA     R   T++A+TGS G
Sbjct: 60  RVVEAGAVAVLGSRP-------VGVPAIVVDDVQAALGALARHVVRRLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN +G+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRRKAPTVFTPGSMNNEVGLPLTALTATDETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I  +  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 173 TELTPPKIGAVLNVGSAHIGEFGGREQIAQAKGELVEALPPAEEG-GAAILNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG+S  AD +    +           L   S         Y        
Sbjct: 232 MASRTKAKVILFGESGEADVRAENVRLTDTGQ-PSFSLHTPSGASDVTMRLYGEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP S KAA+ 
Sbjct: 291 LAAAAVAHELGMSADEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESTKAALR 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
            L  +      R  AVLG M E+G+ + + H  +  +    N+S +    G     L   
Sbjct: 351 ALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREARWLQLG 408

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +         +          ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 409 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVATALLE 461


>gi|89896439|ref|YP_519926.1| hypothetical protein DSY3693 [Desulfitobacterium hafniense Y51]
 gi|89335887|dbj|BAE85482.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 468

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 188/473 (39%), Gaps = 17/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+  A
Sbjct: 1   MTMEMTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   +                  VD    AL  +A A R R    ++ ITGS GKT
Sbjct: 61  FASGAAAALTQEHTRMEAEEA---WIAVDSTQLALQHIAAAYRQRFSIPVVGITGSAGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM  +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  
Sbjct: 118 TTKEMTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSREHEAAVVEMGISDFGEMARLAQ 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P  AV+T +   H+      E I   K  I +   +   +FLN DD     L+ K+ 
Sbjct: 178 VAEPKYAVMTNLGITHIGQLKTQENILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                    +G +   DF+        E +       G+    V   +         +  
Sbjct: 237 ---GYEAVFYGTAPWCDFRAEGITVQGETTAFRCLAPGRESVEVILPVLGMHHVLDALAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+           A              +   +     +ID+SYN++P + K+++SVL
Sbjct: 294 LAVAERLGVPLDRAAAA---LGDYRPLAMRQQIYHVNEVAVIDDSYNSSPGAAKSSLSVL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
           +       GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +    
Sbjct: 351 AGFRA---GRRVAVLADMLELGEYSRQAHFEVGVCAAESGVDILLTVGPEAKAVAEGARS 407

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
               I     +        ++S L  GD V+VK S       ++  LL+ FPA
Sbjct: 408 VRSGIDCRVFDHNRQAAAELKSFLSPGDAVLVKGSRGMHTDEIVRALLQ-FPA 459


>gi|312868912|ref|ZP_07729096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095561|gb|EFQ53821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 459

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 213/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G H DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLEKGALFVPLQGAH-DGHQYVETAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    + +   PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAAATLWASDH--ELTNSDHPVLVVTDPLKALQELGKYYLRKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   + IA AK EI  GL++ G    + D+     L  +  A  
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLFVYDGDEP----LLNERAANI 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+    D           +S      +    +     +G +   N L  + + 
Sbjct: 236 TQQTTRFGRQLTDDLYATSVNA-GSRSIEFKVNEWPDEQFTIPMVGEYNVNNALAAMAVA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+     E    R     ++    ++ + YN+NP + K  +  L+++
Sbjct: 295 KRLHISPNHIKTALAN---VELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
                GRRIAVLGDM E+GE +   H  LAE ++   I  V+L G  +  L+  L     
Sbjct: 352 PVQ--GRRIAVLGDMLELGEAAPRLHASLAEQINPAQIQEVYLVGAEMAHLQAKLQEQGY 409

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +IH + ++ +D L   +++ L   D+V++K+S+     +++  +  +
Sbjct: 410 PAAAIHYYQADQLDQLTAALEADLHPADMVLLKASHGLHLEQVLAAIKAQ 459


>gi|46907087|ref|YP_013476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|46880354|gb|AAT03653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 457

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPKDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     ++
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMN 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGDAMKAFGDIAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|329940946|ref|ZP_08290226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300240|gb|EGG44138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 471

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 198/476 (41%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVMVTGPVVRDSREAVPGSLFVAFVGERADGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V+ GA  V+ +         + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  AVVETGAVAVLGSRP-------VGVPAIVVDDVQRALGALARHVVERLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L +   T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRTKAPTVFTPGSLNNEIGLPLTALSATAETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI---FLNYDDSFFELL 235
           T L  P I ++  +  AH+  F G E+IA AK E+ E L          LN DD + + +
Sbjct: 173 TELTPPRIGLVLNVGSAHIGEFGGREQIAQAKGELVESLPPAEEGGVAVLNADDPYVKAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A++ A  +     FG+S  AD +       +                V   +       
Sbjct: 233 AARTTARVLL----FGESDEADVRAENVTLTAAGQPSFSLHTPSGCSDVTMRLY-GEHHV 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                         +     A ++         R          T+++++YNANP SMKA
Sbjct: 288 SNALAAAAVAHELGMSAKEIATALSEAGSLSRWRMEVTERPDGVTIVNDAYNANPESMKA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
           A+  L+ +      R  AVLG M E+G+ + + H  +  +    N+  +    G     L
Sbjct: 348 ALRALAAM--GRGRRTWAVLGRMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWL 405

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 406 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|83949455|ref|ZP_00958188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
 gi|83837354|gb|EAP76650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius nubinhibens ISM]
          Length = 481

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 174/476 (36%), Positives = 256/476 (53%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +  +A  G + G      V+G+SID+R++A  + F A+K    DGHDF+  A
Sbjct: 1   MSALWTAREAAEATGGTAQG---DWQVSGVSIDTRTLAEGDLFVALKAAR-DGHDFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG  +V+   +    +   P+  V+DVL AL  L  AAR RS+A ++A+TGSVGKT
Sbjct: 57  LGKGAGAALVSH--IPEGVAADAPLLIVEDVLAALEALGRAARARSEARVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L  
Sbjct: 115 STKEMLRTVLARQGRTHAAEASYNNHWGVPLTLARMPRDTQFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A++TT+A AHL  F  IE IA  KA IFEGLE  G   +N D     +L+  + 
Sbjct: 175 LARPHVAMVTTVAAAHLEAFENIEGIAREKAAIFEGLEPGGIAVVNADLDTTPILEEAAT 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G        K++  D+ L   +   +++ +  ++QG++        G H A N L  L
Sbjct: 235 RAGASIRRFGTKAR--DYHLDTVQITGDRTVIRAEIQGETALFKLDCAGRHFAMNGLGAL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356
             V+ L  D   A   L+++ P  GRG R    +++         ID+++NANP S++AA
Sbjct: 293 AAVAALGGDAGRAAPDLALWQPPAGRGTREDVMMDEARQGWVLDLIDDAFNANPTSLEAA 352

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+  +P         GRRIA+LGDM E+G    + H D+A    +  +  V   G  
Sbjct: 353 LEVLAAATPRDNVGRIARGRRIAILGDMLELGPNEIAVHTDIATWPLIAQLDTVHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L  ALPR+    +++  + +   +   +  GDVV+VK S       +   L  
Sbjct: 413 MRHLWQALPRAQRGTWADMAEEMVAELPDLVDAGDVVLVKGSKGSRVSLVAESLRN 468


>gi|257060242|ref|YP_003138130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
 gi|256590408|gb|ACV01295.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8802]
          Length = 457

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 205/449 (45%), Gaps = 23/449 (5%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I ++    ++GI+ DSR I P E F A++G ++DGHDF   AV KGA  ++V+  +    
Sbjct: 22  IDVIDDFLIDGITTDSRYINPGEIFLALRGNNFDGHDFANIAVDKGAIALIVDHHISVKS 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  IP   V D L A  ++A   R +    +IAITGSVGKTTTKE+++  LS+    + 
Sbjct: 82  -TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I +IT +  AH+ 
Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E IA AK E+   +    T   N+D+S       K       +    G       
Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLLVQTAKKVWKGETISYGLEGGD----- 255

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   + +      L+ + M+      G H A N L  + +   L  D +  ++ +S
Sbjct: 256 -------ITGELLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKCLKLDCNVLMQGIS 308

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R R     G   L+DE+YNA   SMKAA+ +L +I        +A+LG M
Sbjct: 309 ----VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQR---HLAILGTM 361

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+GE S   H ++ E      I H+ +       +A+ D     +      T + L   
Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGAL-GMVTECLPTQEELIKR 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  GD ++ K+SNS G  R++    
Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449


>gi|182677681|ref|YP_001831827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182633564|gb|ACB94338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 486

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 185/464 (39%), Positives = 260/464 (56%), Gaps = 1/464 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   L+  +Q    G VP     GISID+R++   + FFAIKG + DGHD++  A  K
Sbjct: 15  LWTPLGLVTPLQARVSGHVPLRPARGISIDTRTLREDDLFFAIKGDNSDGHDYVPAAFAK 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV+      + +   P++ V +VL AL +L  AAR R +A ++A+TGSVGKT+TK
Sbjct: 75  GAMAAVVDEAHADRLAAHG-PLYVVHEVLPALERLGQAARRRVEARVVAVTGSVGKTSTK 133

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L + L+     +A + SYNNH GVPLTLARMP D  FGIFE+GM+H GEI  L  +VR
Sbjct: 134 EALRLVLTQGGSVHASVASYNNHWGVPLTLARMPRDARFGIFEIGMNHPGEITPLVGMVR 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+AP HL  F  +E IA AKAEIF GL   G   ++ D   FE L   +    
Sbjct: 194 PHVAIITTVAPVHLEYFENVEAIADAKAEIFSGLVPGGVAIIHRDIPQFERLAEAARHSP 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I SFG  + AD +L      S+ S ++  +QG+++       G H A+N L  L   
Sbjct: 254 AGLIASFGTHEKADARLLDLTPSSDHSMVKASIQGETLTYRLGAPGRHFAENSLAVLLAA 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A   L+   P+ GRG++       G F LIDESYNANPASM+AA+ +   +
Sbjct: 314 KACGVPLEDAAAVLAFCAPQAGRGQQLVLEAGDGPFRLIDESYNANPASMRAALEMAGTL 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
              G GRRIA+LGDM E+G  +   H  LA++L       V+ +G  +  L DALP  + 
Sbjct: 374 PLEGVGRRIAILGDMLELGPQAPDLHAQLADILREACFDLVFAAGPLMRHLYDALPSGLR 433

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    + L   + +++   D+V+VK SN      L+  L ++
Sbjct: 434 GEWRAKAEDLVPIVGATVQRNDIVLVKGSNGSRMKLLVESLKDK 477


>gi|125623231|ref|YP_001031714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124492039|emb|CAL96966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300069982|gb|ADJ59382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 440

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 191/461 (41%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +        +    VN I  DSR I   + F  +KG  Y GHDFI  A   
Sbjct: 3   LTIHEIAQVVGAKNDWSQLADLSVNKIEFDSRLIEKGDIFLPLKGARY-GHDFIEIAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +     ++  +          VDD L A   LA     ++K  +IA+TGS GKTTTK
Sbjct: 62  GAIISFSEKEVEQA-------HLLVDDNLAAFQTLAKYYLEKTKVPVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS   KTY   G++NN IG+P T+  MP D +  + E+GM H G+I FL+ L +
Sbjct: 115 DMIAAVLSKKYKTYKTQGNHNNEIGLPYTILHMPEDTEKLVLEMGMDHPGDIDFLSQLAQ 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  AHL      E IA  K  I  G        +   D        ++    
Sbjct: 175 PELALITLIGEAHLEFMGSRENIAKGKMGITAG---LHGELIAPADPIINAFIPENQK-- 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                   +       L   K    +  +  +       +     G + A N ++   + 
Sbjct: 230 ------ISRFGLPGEDLFITKLIEHKERLTFETNFLDESITIPVPGKYNATNAMLAAYVG 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      KAL      E    R     ++    L+ + YNANP +M+  +     I
Sbjct: 284 LHYGLTEAEINKALKE---VELTRNRTEWKKSKNGADLLSDVYNANPTAMRLILETFQAI 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +  GR+IAVL DM E+G  +   H ++ + +    I  V+L G  +  L D +     
Sbjct: 341 PKNENGRKIAVLADMLELGPTAAQLHKEVLKSIDFTKIDKVYLYGEMMKNLAD-ISTDKP 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           V Y   +D L   + + L   D V+ K SN      ++  L
Sbjct: 400 VSYFTDLDLLTESLSADLKPADQVLFKGSNIMKLSEVVEKL 440


>gi|315171749|gb|EFU15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX1342]
          Length = 474

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 149/469 (31%), Positives = 224/469 (47%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ +LA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKVTQQV 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I   +S       + QL+       +     ++    M       G +   N L+ +GI 
Sbjct: 257 ITFGFS------QESQLQGIVINEAKEQTSFKISDTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYV 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|153953810|ref|YP_001394575.1| hypothetical protein CKL_1185 [Clostridium kluyveri DSM 555]
 gi|146346691|gb|EDK33227.1| MurF [Clostridium kluyveri DSM 555]
          Length = 463

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 14/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F D+++A+ G  I          IS DSR +   + F A+KG  ++G++++  A +KG
Sbjct: 4   MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 63

Query: 65  AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+     S        +  V +   AL +LA   R +    II +TGSVGKTTTK
Sbjct: 64  ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +    R
Sbjct: 124 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+  L 
Sbjct: 184 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G++ +        ++   +  +           + +  G +   N L+ +   
Sbjct: 244 ---RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCG 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D   + +        R +  R       FT+I++ YNANP SMKAAI VL + 
Sbjct: 301 RLLNMSYDEIREGVKNIKLTSMRMEIIRKKE----FTIINDCYNANPESMKAAIDVLKEF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
             + +   IAVLG M E+GE +   H ++       +I  +   G +    +       +
Sbjct: 357 KSNRK---IAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKSTNK 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +    +  + L  FI   +  GD ++VK+S       +I  L +
Sbjct: 414 KGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIETLKK 459


>gi|313624509|gb|EFR94509.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL J1-023]
          Length = 470

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 210/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V++ L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS  A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSDEAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A K      I  
Sbjct: 366 SKGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAETKIGQ 424

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 468


>gi|160944900|ref|ZP_02092127.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444084|gb|EDP21088.1| hypothetical protein FAEPRAM212_02416 [Faecalibacterium prausnitzii
           M21/2]
          Length = 460

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 203/447 (45%), Gaps = 13/447 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  +       + 
Sbjct: 22  DPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAAYVVVNHPVPGVPEEKA- 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 D   A+  +    R +    ++ +TGSVGKTTTK+M   ALS   +T    G+ 
Sbjct: 81  --ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTEGNQ 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P TL R+    ++ + E+GMSH GEI  L    RP + +IT I  +H+ N    
Sbjct: 139 NNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGSQ 198

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  AK EI  GL +   + LNYDD F    KA   A      +S          L   
Sbjct: 199 ENICKAKLEICNGLPEGAPLVLNYDDPFLR--KAALPAHVRPVWFSLSDENADVCALSIR 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    S++    +  +  V    +G H   N L      + L  D    I+ LS F   
Sbjct: 257 QETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSNFE-- 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             +  R +  ++    T+I++ YNANP SM    + L+        RR A+LGDM E+GE
Sbjct: 315 --QTGRRQKVVDSEGVTVIEDCYNANPDSM---KAALAMFKDFPCKRRFALLGDMLELGE 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442
           LS+  H +L  + +   +  +   G         A  + +   ++++       + S + 
Sbjct: 370 LSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALLSRVQ 429

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
            GD ++VK+S+     +++++  EE  
Sbjct: 430 PGDAILVKASHGMALEKVLDIFYEEHK 456


>gi|119944899|ref|YP_942579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychromonas ingrahamii 37]
 gi|119863503|gb|ABM02980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychromonas ingrahamii 37]
          Length = 489

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 130/479 (27%), Positives = 207/479 (43%), Gaps = 23/479 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ +A  G  I    P+   N IS D+R I   + F A++G  YD H F+  
Sbjct: 14  MISL-TLAEIAKATAGQIINCEHPEAVFNNISTDTRQIKSGDLFIALRGERYDAHQFLEK 72

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           AVQ+GAG ++++           +P   V D   AL  LA   R +       AITGS G
Sbjct: 73  AVQQGAGALLIDQK-----KRSDLPCVLVQDTRIALGLLASYVRQQIGRLKCAAITGSNG 127

Query: 119 KTTTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           KTTTKE+L+  L         +    G++NN IG+PLTL R+     + + ELG +HLGE
Sbjct: 128 KTTTKELLSAILCCHTGNNENVLATAGNFNNDIGLPLTLLRLTEKTRYAVVELGANHLGE 187

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +   L +P +A+I  + PAHL  F  ++ +A AK EI+  L  TG   +N D  F   
Sbjct: 188 IAYTAQLTKPDVALINNVMPAHLEGFGSLQGVAQAKGEIWSSLGDTGIAVVNLDSDFASE 247

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHM 292
              +   L  +      +S+ A          S  + S+    +  +  + +   +    
Sbjct: 248 YLTQLKKLNRQVFTFSKESEKAHVSASNIIFSSLGKASFRLNVMLNRDPQAISIQLNLAG 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+   L   ++  A         +     +    R          TLID++YNANPAS
Sbjct: 308 LHNVSNALAAATMALALGCNLKDIQAGLGLVQQVEGRVDSRELNKLVTLIDDTYNANPAS 367

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +K AI +L Q +       + VLGDM E+G+ S+  H  + E  +   I  +   G    
Sbjct: 368 VKVAIDLLQQYASS----HLLVLGDMAELGDFSEHEHFLIGEYAAQKGIQTLITFGKLTF 423

Query: 413 ALKDALPRSIHVH--YSETMDGLFLFIQSSL--VDGD-VVVVKSSNSCGFYRLINLLLE 466
               A  ++      +      L  ++++ L        ++VK S       ++N + +
Sbjct: 424 KTYQAFKQAGQGEALHFADKKQLNAYLENRLLEQKNKLTILVKGSRGSKMEEVVNFIKQ 482


>gi|171778651|ref|ZP_02919747.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282608|gb|EDT48032.1| hypothetical protein STRINF_00599 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 454

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 201/472 (42%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LNLHEIAKVVGAKNTISDFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEREVE------GHPYILVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI V+T I  AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAKGKLQIVDGMDSDGILIAPVDSIVDPYLPESQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++        +  +          +     G + A N ++   + 
Sbjct: 236 ----------FGDGAEIFVKDLQESKDSLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D  ++AL        R +  + A       ++ + YNANP +M+  +   S+I
Sbjct: 286 KLLAISDDDIVEALENIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y       +  D +   +Q+ L   D +++K SNS    +++  L  
Sbjct: 403 LGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEN 454


>gi|307271844|ref|ZP_07553112.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
 gi|306511350|gb|EFM80352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0855]
          Length = 474

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|255026145|ref|ZP_05298131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-003]
          Length = 457

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGICFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALFSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|89095263|ref|ZP_01168184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
 gi|89080470|gb|EAR59721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Oceanospirillum sp. MED92]
          Length = 457

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 189/469 (40%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W  + L     G           +G+S D+RSI   + F A+ GP++DGHD++  A
Sbjct: 1   MIGQWYLNQLKDQFGGLVTQ---DVEFSGVSTDTRSITKGDLFVALVGPNFDGHDYVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   VV+     S  +     + VDD   AL  +A A R R +  + A+TGS GKT
Sbjct: 58  FSKGAVAAVVSRSDSVSRKAA----WVVDDTRIALADIAKANRQRFEGPVYAVTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   LS   +  A  G+ NN IGVPLTL  +    +  + E G S  GEI + T 
Sbjct: 114 TVKEMLHAILSQNAEVLATKGNLNNDIGVPLTLFSLKDQHEIAVIEQGASARGEIAYTTD 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A++     AHL  F  ++ +  +KAEIF  L +TG   +   D           
Sbjct: 174 ISCPDVAILNNAMGAHLEGFGSLQGVVESKAEIFSRLSETGGHAIINLDDPHADWWLSHT 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  +S      AD             +  V     + ++V    +G H   N L  
Sbjct: 234 EGLPRLTFSARGDLEADLWASDLAPSDNGCFAFVLHRNDEQIDVQLQVMGQHNVANALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              VS     +      L  F    GR +  + A       +ID+SYNANP S+    + 
Sbjct: 294 ASAVSAQGMSLKDIASGLGSFSAVSGRMRPLKSARG---ALVIDDSYNANPGSV----NA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417
              +     G  + VLGDM E+G  +   H  +    +       W  G        A  
Sbjct: 347 AMDLLVSLPGESVLVLGDMAELGADAAEQHEKVGCRAAQKGTDRFWAIGALSRHSVAAYD 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   + ++ + L   +      G  +++K S S    R++  L E
Sbjct: 407 AAAGKQGQHFKSHEELIAALADIAEQGVNILIKGSRSAAMDRVVKGLTE 455


>gi|306827070|ref|ZP_07460368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304430816|gb|EFM33827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 455

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 213/472 (45%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPNDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  +          E+  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
           + +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L         
Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 403 EGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|50914530|ref|YP_060502.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94994661|ref|YP_602759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|50903604|gb|AAT87319.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus pyogenes MGAS10394]
 gi|94548169|gb|ABF38215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 463

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 213/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELSGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F    +IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRNKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 403 AEQVHYFLKTEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|315302238|ref|ZP_07873150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
 gi|313629388|gb|EFR97609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria ivanovii FSL F6-596]
          Length = 459

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 213/469 (45%), Gaps = 16/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T  +++  +             + G+  D+R I P + F    G   DGH+F+  
Sbjct: 1   MILKKTVGEVVGMLDSTIHTDAFRDVVITGVCFDTRQIKPGDLFVPFVGELRDGHEFVGQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA       ++         PV  V+D L AL ++A       K  +IAITGS GK
Sbjct: 61  AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQEMAKKYIQEVKPKVIAITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+
Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IA+IT I  AH+      EEIA AK EI  GL  +G +   Y+++         
Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLSPSGILIYPYEEALLLSHID-- 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G     +FGKS+ A+         +E +      +   +E+    IG H   N + T
Sbjct: 237 ---GDFRQLTFGKSQEAEIYPLAIHAEAEGTAFVTNWE-PDLEIFVPIIGEHNVFNAMAT 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +  + +   KAL           R      +    +++++YN++P ++K  +  
Sbjct: 293 MLAAREIGIEGEKIQKALRNME---RSKSRLEWLTTKNGTRILNDAYNSSPTALKTVLKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +   G+  +  VL DM E+GELS+  H + AEVL    +  V+L G  + A ++   
Sbjct: 350 FMHMDSQGKR-KYLVLADMLELGELSEQLHKESAEVLEEGAVEKVFLYGEAMKAFEEVAK 408

Query: 420 RSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             I    V + +T + L   + + +   + ++VK S   G   ++  L+
Sbjct: 409 IKIGQRKVQHFDTKESLETALLNEMDGNEWILVKGSYGMGLKDVVENLI 457


>gi|93007200|ref|YP_581637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter cryohalolentis K5]
 gi|92394878|gb|ABE76153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter cryohalolentis K5]
          Length = 482

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 202/469 (43%), Gaps = 26/469 (5%)

Query: 12  QAIQGHS------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            A+ GH        G         I+ D+R+I P + F A+ G ++DGHD++  A+ +GA
Sbjct: 27  AALDGHWQLSEEQSGSKNDVMSTRIATDTRTIKPGDIFLALTGDNFDGHDYLDTAIAQGA 86

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKE 124
              +V   +  +  + SIP   V D   AL +LA   R +    T+IAITGS GKTT KE
Sbjct: 87  VAAIVARPIATADAN-SIPQLVVSDTRLALGQLAAYRRQQHQNLTVIAITGSSGKTTCKE 145

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML      +  T    G+ NN +GVP+ L  +     + I ELG +H+GEI + T +V+P
Sbjct: 146 MLGSIFGRLAPTLITRGNLNNDLGVPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQP 205

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A I  I  AHL  F   E I   KAEI+  L  +    +   D F   L+  +     
Sbjct: 206 DVACILNIGTAHLGEFGSREGICQTKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTS 265

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I         D          E+S  ++ +  +  ++     G H   N L       
Sbjct: 266 HVIGFGST----DVSASHLDVEPERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAH 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +V   +  L    P +GR          G   LID++YNANP S+       +++ 
Sbjct: 322 ALNIEVSDIVVGLENARPAKGRLNSQ----LLGMHRLIDDTYNANPHSV----RAAAKVL 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
               G ++ VLGD+ E+GE + S H  L   ++   I+ +   G +     +       I
Sbjct: 374 AAQTGTQVMVLGDIAELGEAAVSEHQSLGRTIATTGINVLLCVGEYAPYTVEGAQEISDI 433

Query: 423 HVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEE 467
           + +     D L  +++  L         V+ K S S     LIN L+EE
Sbjct: 434 NAYAFTDKDSLLAYLKPYLQAQQAQPCTVLFKGSRSMEMETLINALVEE 482


>gi|254898972|ref|ZP_05258896.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Listeria
           monocytogenes J0161]
          Length = 457

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 206/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  +L DM E+G+LS   H + AEVL    I  V+L G  + A  +     I  
Sbjct: 353 SSGK-PKYLILADMLELGDLSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+ +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGLKDVVENLI 455


>gi|292490620|ref|YP_003526059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
 gi|291579215|gb|ADE13672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus halophilus Nc4]
          Length = 448

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 139/458 (30%), Positives = 209/458 (45%), Gaps = 19/458 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +QG   G        G+S D+RS+ P   F A+KG ++DGH F+  A +KGA 
Sbjct: 3   LAELTPVVQGRLQG--EDVVAQGVSTDTRSMTPGALFVALKGQNFDGHAFVAQAREKGAS 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             ++           S+P   V D   AL +LA   R R +  ++A+TGS GKTT KEM+
Sbjct: 61  AALLEQ-----TIEDSLPQVEVADARTALGQLATYWRQRFEHPVVAVTGSNGKTTVKEMI 115

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L       A  G+ NN IGVPLTL  +     F + E+G +   EI +L+ LVRP +
Sbjct: 116 ASVLGGAGSVLATQGNLNNDIGVPLTLLGLDPSHRFAVIEMGANQPSEIGYLSCLVRPQV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +      G   
Sbjct: 176 ALITNAGPAHLDGFGDLKGVARAKGEIFQGVNPGGVAVLNADDPHFSYWRD---LAGELP 232

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG +++A+         SE S   +        V     G H   N L    +   L
Sbjct: 233 VIGFGLTQSAEVTAHHLAAHSEGSRFTLVTPVGKTPVQLSLPGRHNVLNALAASAVAIAL 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D D    AL+      GR +  R A       L+D++YNANPAS+KAA+ +L++    
Sbjct: 293 GLDRDQISAALAALPSIPGRLQIRRGAGG---MRLLDDTYNANPASLKAALELLAEFP-- 347

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G R  VLGD  E+GE +   H  + +      ++ ++  G       +A  +   +H+
Sbjct: 348 --GERFLVLGDFAELGEEAAPLHRMMGKQARAAGVNRLYTLGHLSALAAEAFGQEA-LHF 404

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            E    L   ++        ++VK S      +++  L
Sbjct: 405 FE-QQSLLAALREEQRPNVTMLVKGSRCMRMEQIVAAL 441


>gi|320546376|ref|ZP_08040692.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448986|gb|EFW89713.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equinus ATCC 9812]
          Length = 454

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 204/472 (43%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA        +         P   VDD L A  +LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSERKVE------GHPYILVDDCLQAFQELASYYLEKQRVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI V+T I  AHL  F   ++IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIGVVTLIGEAHLEFFGSRDKIAKGKLQIVDGMDSDGILIAPADSIVDPYLPEGQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++        +  +       +  +     G + A N ++   + 
Sbjct: 236 ----------FGDGAEISVNDLQESKDSLTFTTNVINRPITLPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D  ++AL        R +  + A       ++ + YNANP +M+  +   S+I
Sbjct: 286 KLLAISDDDIVEALENIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     +   
Sbjct: 343 PANSGGKKIAVLADMKELGEQSVELHKRMIMSLSPDVLDTLIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y       +  D +   +Q+ L   D +++K SNS    +++  L +
Sbjct: 403 LGKVYYFKKTADEDQFDDMLKTVQTVLQPADQILLKGSNSMHLAKVVEALEK 454


>gi|295688557|ref|YP_003592250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
 gi|295430460|gb|ADG09632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Caulobacter
           segnis ATCC 21756]
          Length = 462

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 179/456 (39%), Positives = 253/456 (55%), Gaps = 16/456 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LWT  ++ QA+ G   G        G+SID+RS+   + F  + G   DGHDF+  AV 
Sbjct: 4   ALWTADEIAQAVGGQVAG---DFAATGVSIDTRSVEQGDLFVPLVGAR-DGHDFVPQAVA 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            GA  V+           +  P   V+D   AL  L VAAR R  +    A+TGSVGKT+
Sbjct: 60  NGAAGVLAAQP-------VDAPAVMVEDTFKALEALGVAARERAPRCKRGAVTGSVGKTS 112

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +   L    K +A + SYNNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  
Sbjct: 113 VTRAVEAGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEIGMNHADEITPLSSF 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           V+PH   ITT+ P H+ NF   E  +A AKAEIF GL   G   LN D+ +F+ LK ++ 
Sbjct: 173 VQPHAVAITTVGPVHIENFPDGEAGVARAKAEIFAGLMPGGIAVLNADNRWFDYLKGEAE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G  T++SFG+++ A  +L  +    E++ + V L+G+++       G H   N L  L
Sbjct: 233 KVGA-TVWSFGEAQGATARLTGFTVEGERAVVSVDLRGETLTFPIRQTGVHWGPNSLCVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    +TA+ AL+ F P EGRG      +  G FTL+DESYNANP SM+AA+  L
Sbjct: 292 LMLEALDVPRETALAALAAFAPIEGRGAEKTVQIGGGAFTLVDESYNANPVSMQAALKTL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    GRRI VL DM E+GE S  FH +LAE ++  N+  V+L+G H+ +L +ALP 
Sbjct: 352 G--ARKVAGRRIVVLTDMLELGEDSARFHAELAEPIAAANVDMVFLAGVHMKSLWEALPP 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    Y+   + L   +  ++  GDVV+VK SN   
Sbjct: 410 TRRGGYAVVTEKLTAELAGAIRPGDVVMVKGSNGSR 445


>gi|300112939|ref|YP_003759514.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
 gi|299538876|gb|ADJ27193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Nitrosococcus watsonii C-113]
          Length = 454

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 137/458 (29%), Positives = 208/458 (45%), Gaps = 19/458 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +QG   GI      +G+S D+RS+AP   F  ++G  +DGH FI  A +KGA 
Sbjct: 9   LAELASVVQGRLQGI--NIAASGVSTDTRSLAPGALFVVLRGLRFDGHAFITQAREKGAS 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             ++   +        +P   V D   AL +LA   R R    I+A+TGS GKTT KEM+
Sbjct: 67  AALLEQRINDP-----LPQIEVADARIALGQLAACWRRRFARPIVAVTGSNGKTTVKEMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L  ++   A  G+ NN IGVPLTL  +     F + E+G +  GEI +L+ L RP +
Sbjct: 122 ASILGWVEPILATRGNLNNDIGVPLTLLELDTSHSFAVIEMGANRPGEIEYLSRLTRPQV 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT   PAHL  F  ++ +A AK EIF+G+   G   LN DD  F   +      G   
Sbjct: 182 ALITNAGPAHLDGFGDLKGVARAKGEIFQGMGSEGVAILNADDPHFSYWRD---LAGGLP 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +  FG S++A+   R     ++ S   +      +++     G H   N L        L
Sbjct: 239 VMGFGLSRSAEVTARHIVASTKGSRFTLITPAGKVKIQLPLPGRHNVFNALAASAAAIAL 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D      +L+      GR +  R         L+D++YNANPAS++AA+ +L++    
Sbjct: 299 GVDRQHLSASLAALPSIPGRLQIRRGIGG---MRLLDDTYNANPASLQAALELLAKFP-- 353

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G R  VLGD  E+GE +   H  + +      ++ ++  G        A  R     +
Sbjct: 354 --GERALVLGDFAELGEEAAPLHQAMGKQARAAGVNRLYTLGRLGAFAAKAFGRG--ASH 409

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 L   +Q  L     V+VK S      +++  L
Sbjct: 410 FLERQPLLAALQEELHPDITVLVKGSRCMYMEQIVAAL 447


>gi|253998168|ref|YP_003050231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
 gi|253984847|gb|ACT49704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Methylovorus
           sp. SIP3-4]
          Length = 457

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 142/468 (30%), Positives = 223/468 (47%), Gaps = 24/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L  A+ G  +G         +  DSR+I P + F A++G  +DGH ++L A+Q 
Sbjct: 1   MMRLSELAAAVGGELVG--EDVLFTSVGTDSRNIVPGQLFIALRGERFDGHAYVLQALQS 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G         +VA           V +   AL +LA   R R    + AITGS GKTT K
Sbjct: 59  G-----AAAALVAEAQPGMAAGVVVKNTRLALGQLAAVWRNRFSIPVAAITGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EM+   L +       +    G+ NN IG+PLTL R+     + + E+GM+H GEIR+L+
Sbjct: 114 EMVASILRAEAGDSNAVLATRGNLNNDIGLPLTLLRLRPSHKYTVAEMGMNHFGEIRYLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP +A++     AHL     +E IA AK EIFEGL   G   +N DD +  L     
Sbjct: 174 QMARPTVALVNNATSAHLGGLGSVEGIARAKGEIFEGLALEGMAVINADDLYAPLWTE-- 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G   I +FG +K AD     ++  ++ S++ ++     +       G H  +N L  
Sbjct: 232 -LAGEHDILTFGLAKMADVT-ANYELRADTSYVYMKSPIGGIAFNLQVAGLHNVRNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A  ++  K L  F   +GR    +     G   +ID++YNANPASM+AAI V
Sbjct: 290 STVAIAMGARPESIAKGLEAFDGVDGR---LQHRAGIGQALVIDDTYNANPASMRAAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G+R+ VLGDM E+GE + + H ++ +      I+ ++  G   L +  A  
Sbjct: 347 LA----ARPGKRLLVLGDMGELGETAAAMHTEIGQYAREAGINGLYTLGDLSLEMSKAF- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                H+ +T + L   +   +    VV+VK S      R++ L++ E
Sbjct: 402 -GDPAHHYKTPEQLVAGLCHEMDANTVVLVKGSRFMRMERVVQLIVSE 448


>gi|83648526|ref|YP_436961.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636569|gb|ABC32536.1| UDP-N-acetylmuramyl pentapeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 448

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 131/467 (28%), Positives = 207/467 (44%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W   D+ +A+ G + G         ++ DSR+      F A+KG  +DGH++I  A
Sbjct: 1   MIGDWLTDDIAKAVGGAAEGDS--VAFTRVTTDSRADCSGALFVALKGDRFDGHEYIDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+          +  +    V D L  L +L    R R    + A+TGS GKT
Sbjct: 59  VSQGAVAVMAQAK-----ANADVAQIIVPDSLAGLGRLGALNRSRFNGPVAAVTGSAGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   LS         G++NNHIGVPL+L ++  +    +FELG S +GEI +   
Sbjct: 114 TVKELLASILSQRGDVCKTQGNFNNHIGVPLSLLQLTEEHRSAVFELGASAVGEIAYTVA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++   A  H+  F  +  I  AK EI  GL + G   LN DD+ F        
Sbjct: 174 LARPQVAILNNAAAVHVEGFGDLASIVKAKGEIVCGLPEDGVAVLNKDDANFSAWVE--- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + + SFG   +A  + +        S   +      ++      G H  +N L   
Sbjct: 231 MAGARKVISFGLDDSAMVRAQNIHLELNGSTFRLSAPEGGIDATLPLPGAHNVRNALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   ++     L+   P +GR       L      ++D++YNA+P SMKAAI VL
Sbjct: 291 AAALALGWTLEEVRDGLASAAPVKGRMN---KLLGINGSVILDDTYNASPTSMKAAIDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           ++      GRRI  LG M E+G +++  H ++A+      +  +   G      ++    
Sbjct: 348 ARYP----GRRIVALGHMGELGSVAEDAHREVAQYARDNGVDMLLGIGRWAAEYREGFGD 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              V    T D +  +++  L     V+VK S S     ++  ++E+
Sbjct: 404 ESPV--VTTHDDIAAWLRERLDSNTTVLVKGSRSAAMENVVKQIVEK 448


>gi|294677019|ref|YP_003577634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
 gi|294475839|gb|ADE85227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter capsulatus SB 1003]
          Length = 483

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 173/476 (36%), Positives = 248/476 (52%), Gaps = 17/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G +          G+SID+RSI P E F A+K    DGHDF+  A
Sbjct: 1   MAVLWTSIDAAVATGGRATRPF---MATGLSIDTRSIRPGEMFVALKDVR-DGHDFVADA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+            P+  V DVL AL  L  A R R++A +IA+TGSVGKT
Sbjct: 57  LKKGAACALVSRIPEGCSEED--PLLLVPDVLRALEDLGRAGRARARAQVIAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  + +A   S+NNH GVP+TLARMP + DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRAVLSAQGRVHAAEASFNNHWGVPITLARMPAEADFAVIEVGMNHPGEISPLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH A+ITT+A AHL  F  +++IA  KA IF+GLE  GT  +        +L A + 
Sbjct: 175 MARPHAAMITTVAAAHLEAFETLDDIAREKAAIFDGLEPGGTAVVPTGLESTPILLAAAK 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG +  +D++L   K   + + ++ +  GK M       G H A N L  L
Sbjct: 235 ARAGQVV-TFGPAPGSDYRLVSAKIAGDATIVQAEQAGKPMLFKVMTPGKHFANNALGVL 293

Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +   + AD   A   + ++ P                    F L D+++NANPASM+A 
Sbjct: 294 ALARAVGADPAVAALDIGLWAPPAGRGTRERIWLDLIDEAQSFDLFDDAFNANPASMEAG 353

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRR+A+LGDM E+G      H  +AE+ ++ +I  V L+G  
Sbjct: 354 LEVLAGQVPRDGVGRVKRGRRVAILGDMLELGAGEARLHAAIAELPAMVSIDIVHLAGPR 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + AL +ALPR     + ET   L       +  GDVV+VK S       +++ L +
Sbjct: 414 MRALHEALPREKRGEWVETARDLAARAPHLVDAGDVVLVKGSKGSKVSLVVDALRK 469


>gi|312885134|ref|ZP_07744818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367207|gb|EFP94775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 453

 Score =  252 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 208/472 (44%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++ +A+ G   G      V+ +S D+R+I     F A+ G ++D HDFI  A
Sbjct: 1   MISL-TLAEIARAVGGELKG--EDISVSSVSTDTRTITSGTLFIALIGENFDAHDFIEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V KGA  ++V+  +      ++ P   V+D   AL KL        K   +AITGS GKT
Sbjct: 58  VIKGAAALIVSQKL-----QITTPHILVEDTRIALGKLGSIVHQLCKTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEMLT  LS   +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMLTSILSQKGQVLFTQGNFNNDIGVPLTLLRAKPEDDFAVIELGANHIGEIDYTTR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +A++  +A AHL  F  I+ +  AK EI+ GL+      +N D +  +  +    
Sbjct: 173 LVNPDVALVNNVAAAHLEGFGSIDGVMQAKGEIYNGLKSGAVAVINLDSNGGQYWQD-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A       S   SK   F          ++   +        +    +G H   N L   
Sbjct: 232 ADKTVKTVSMNDSKADYFATDIQLNERGEASFIMTTPIGECVIQLSLVGQHNVANALSAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +     A ++     L+       R              LID+SYNA+  +MKAAI +L
Sbjct: 292 SLALEFGASLEDVKSGLNQLTKVSAR---AEVIELNKQIRLIDDSYNASVPAMKAAIDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G+R  +LG+M E+GE S + H  + +  + +   +V   G     + +    
Sbjct: 349 SNYR----GKRWLILGNMAELGEESLALHRQVGQHAAPFRFDYVLTYGADAKVISE---- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468
                +      +  FI+  L         ++VK + S G   ++  + E F
Sbjct: 401 ESDGIHFCDHQSMIDFIKKQLGHEKAQQQTLLVKGALSAGMSVVVKAIKESF 452


>gi|299822343|ref|ZP_07054229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
 gi|299815872|gb|EFI83110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria grayi DSM 20601]
          Length = 455

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 199/463 (42%), Gaps = 16/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + +Q  +     +  V GI  D+R I   + F    G   DGH+F+  A + GA
Sbjct: 4   TLKQIKEMLQIETRSPFDETLVTGICFDTRVIEAGDLFVPFVGAARDGHEFVDQARKAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  D+         P+  VDD L AL + A          +IA+TGS GKTTTK++
Sbjct: 64  SAAFWQKDV--PNPPADFPLIFVDDTLLALQQTAAVYLQEVNPKVIAVTGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+  L    + +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P 
Sbjct: 122 LSGMLRETFRVHRTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSQIAQPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+      EEIA+AK EI  GL+  G      D+       A        
Sbjct: 182 IAIITNIGEAHIEYLGSREEIANAKFEIVTGLKADGLFIYPGDEPLLTEHTAL-----PA 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG++  A       K   E +      Q    E     IG H   N +  +     
Sbjct: 237 RSVTFGRTDQATIFATTIKTSEEGTT-FTTNQTADREFYVPIIGEHNVFNSMAAMLAAFE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  + +T   AL      +    R           +++++YN++P ++K  ++    +  
Sbjct: 296 LGVEPETIQTALRH---IDRSKSRLEWLTTPKGSRILNDAYNSSPTALKTVLNTFLNMPT 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +     VL DM E+G+ S+  H + A  L    ++ V+L G  +    D         
Sbjct: 353 AAKK--YLVLADMLELGDFSEQLHQESARTLENGEVAGVFLYGTAMKNFADEAASLIGQE 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            VHY    + L   + ++L   + ++VK S S G   ++  L+
Sbjct: 411 KVHYFTDKEALTDAVSNALTGNEWILVKGSYSMGLKDVVEKLM 453


>gi|256964333|ref|ZP_05568504.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954829|gb|EEU71461.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 457

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 152/469 (32%), Positives = 229/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHHFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|306833027|ref|ZP_07466159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
 gi|304424926|gb|EFM28060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus bovis ATCC 700338]
          Length = 454

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 202/472 (42%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    +I       +  I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKVVGAKNTISEFDDVPLRQIEFDSRKIEKGDLFLPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   VDD L A   LA     + +  +IA+TGS GKTTTK
Sbjct: 62  GAVATFSEREVA------GHPYIWVDDCLEAFQALASYYLEKQRVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 116 DMIAAVLSTEYKTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSELAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI V+T I  AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIGVVTLIGEAHLEFFGSREKIAEGKLQIVDGMDSDGILIAPADTIVDPYLPESQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++        +  +          +     G + A N ++   + 
Sbjct: 236 ----------FGDGAEIFVKDLQESKESLTFTTNVIDRPITLPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D  ++AL        R +  + A       ++ + YNANP +M+  +   S+I
Sbjct: 286 KLLAISDDDIVEALETIELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSKI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   LS   +  +   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGEQSVELHKRMIMSLSPETLDTLIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYSE------TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y +        D +   IQ  L   D +++K SNS    +++  L +
Sbjct: 403 IGKVYYFKKTADENQFDAMLETIQKVLQPADQILLKGSNSMQLVKIVEALEK 454


>gi|210614783|ref|ZP_03290312.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
 gi|210150552|gb|EEA81561.1| hypothetical protein CLONEX_02526 [Clostridium nexile DSM 1787]
          Length = 459

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 200/468 (42%), Gaps = 22/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V G++IDSR I     F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITAACHGQYFGGEAVSHIEVAGVAIDSRKIEKDWLFIPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +        + ++S P   VD    AL  +A   R      ++ ITGSVGKT+T
Sbjct: 64  KGALCTLSE----VVLENVSHPYILVDSCEQALKDIAEHYRKALDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+  +  + +  + E+G++H GE+  L  + 
Sbjct: 120 KEMIASVLEQKYHVLKTAGNFNNEIGLPLTIFNIRDEHEIAVLEMGINHFGEMHRLAKMA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT I   HL N    + I  AK E+F+ ++    I LN DD     +      +
Sbjct: 180 RPDICVITNIGLCHLENLIDRDGILKAKTEMFDFMQPDAKIILNGDDDKLITVTD----V 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +T   FG S   D         S +     + L    ++ +    G HM  N L    
Sbjct: 236 KGQTPMFFGLSTELDAFADNIHTHSLKGVSCTLHLGDNCIDTMIPIPGNHMVYNALAGAL 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +   K +    P  GR       +      +ID+ YNANP S KA+I VL 
Sbjct: 296 VGRELGLTAEEIKKGIESLTPVSGRNNM----ILTDSLLIIDDCYNANPVSTKASIDVL- 350

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDAL 418
                 E R++A+LGDM E+GE  +  H  +    S   I  V   G    A     + L
Sbjct: 351 ---SGAETRKVAILGDMFELGEDEKELHRQVGVHASEKGIDLVICIGELSKATAAGAEEL 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                V + +T    F  +   L   D ++VK+S+   F  ++  L E
Sbjct: 408 SAGNQVVHFDTKADFFTKMNELLHKDDTILVKASHGMEFPEIVTRLQE 455


>gi|315149606|gb|EFT93622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0012]
          Length = 474

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 153/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA+   +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVESSNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S S H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSASMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|226223474|ref|YP_002757581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes Clip81459]
 gi|225875936|emb|CAS04640.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
          Length = 457

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 207/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+      +  PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A   + +A    
Sbjct: 353 SSGK-PKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             VH+  T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDVVENLI 455


>gi|209559647|ref|YP_002286119.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540848|gb|ACI61424.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus pyogenes NZ131]
          Length = 463

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 213/471 (45%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   DGH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-DGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L    KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVEDCLKTFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G+   G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  D          ++  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGNQQEIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I AL         G R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVTDEDIIAAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           + +  G++IAVL DM E+G+ S   H  L + L+  NI  +   G H+  L     +   
Sbjct: 343 AKNPGGKKIAVLADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  VHY       +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 403 AEQVHYFLKAEQEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 453


>gi|67922378|ref|ZP_00515890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
 gi|67855829|gb|EAM51076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Crocosphaera
           watsonii WH 8501]
          Length = 452

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/466 (25%), Positives = 197/466 (42%), Gaps = 26/466 (5%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             ++   + G        +    +N IS DSR+I   + F A++G  +DGH F+   + K
Sbjct: 3   LREIPTILSGTFQKISQTLSDKSINKISTDSRTIQENDIFIALQGDKFDGHRFVDEVIDK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++VN ++     +  IP   V D L A  ++A   R   K  II ITGSVGKTTTK
Sbjct: 63  GAIALIVNHEVSVKS-TKEIPQIVVKDTLIAYQEIANWWRNHVKIPIIGITGSVGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L      +    +YNN IGVP TL  +  + ++ + E+ M   GEI  L+ +  
Sbjct: 122 EIIAAVLGVYGNVHKTQANYNNEIGVPKTLLGLTTNHNYAVIEMAMRGKGEIALLSQIAC 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+      + IA AK E+   + +     LN+DD       A      
Sbjct: 182 PTIGIITNVGTAHIGRLGSRQAIAEAKCELLAEMPENSVAILNHDDQRLVETAATVWQGK 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T    G               + +      L+ + M+      G H A N L  L + 
Sbjct: 242 TITYGLEGGD------------ITGELLENQILRVEGMDFPLPLPGRHNALNYLAALAVT 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D    ++             R +    +    L+DE+YNA   SM    + L  +
Sbjct: 290 KELNLDWTFLMEG----VTVNLPQGRSQQYSLKNDVILLDETYNAGLESM---KAALQLL 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                 R +AVLG M E+ + S   H ++ E      I  +++        A+   +  +
Sbjct: 343 KDTPGTRHLAVLGTMKELADASAELHREVGETAEKLAIDALFILVDDPQSQAITKGV-TT 401

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           I      T + L   ++  +  GD ++ K+SNS G  R++  +L++
Sbjct: 402 IETQSFPTHEQLIQRLREVIQPGDRILFKASNSVGLNRVVEAVLQQ 447


>gi|160939822|ref|ZP_02087169.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437256|gb|EDP15021.1| hypothetical protein CLOBOL_04713 [Clostridium bolteae ATCC
           BAA-613]
          Length = 477

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 131/481 (27%), Positives = 205/481 (42%), Gaps = 31/481 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +LL+A  G+ +       V  IS+DSR++   + F  I G   D H F+  A+  GA
Sbjct: 5   TVKELLEATGGNLLHGQEDQHVKHISLDSRTMEGDDLFVPIVGERVDAHRFLCQAIASGA 64

Query: 66  GLVVVNTDMVASIGSLSIPV-----------------FGVDDVLGALNKLAVAARLRSKA 108
            +V  +           +                     V D   AL  L    R     
Sbjct: 65  AVVFTSEHHCGEDVKACVRQQCGENREQERKALQAAWIEVRDTKKALQDLGSFCRKSLSL 124

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ ITGSVGKTTT+EM+  ALS+  K Y   G+ N+ +GVP+T+A +P   + G+ ELG
Sbjct: 125 PLVGITGSVGKTTTREMIAEALSAGFKVYKTPGNSNSQVGVPITIAEIPQSAEIGVIELG 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           MS  GE+  +  + R   AV+T I  AH+      E I   K  I EG+   G +FLN D
Sbjct: 185 MSEPGEMERIARVARVDCAVMTNIGIAHIEQLGSQECILEEKLHIQEGMPPEGILFLNGD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  K     +     +G  ++ D++                     + V    +
Sbjct: 245 DPLLASVVPKEGRKKVL----YGLGRDCDYRAEDLHLEEGYPVFTAVHGDCRVRVRLKVM 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HM  N +  L +       ++ A  AL  F       K  +     G  T+ID+SYNA
Sbjct: 301 GSHMVSNAMAALAVADTYGLSMEKAALALGQFKG----YKGRQQIFEWGGVTVIDDSYNA 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P SMKA + VL  +    +   IAVL DM E+G  ++ FH ++   +  + +  V L G
Sbjct: 357 SPVSMKAGLEVLDSVKGERK---IAVLADMKELGPDTERFHAEIGAYIGEHPLDMVLLLG 413

Query: 409 FHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +    DA   +      +++     ++  ++ +GD ++ K SNS      +  L 
Sbjct: 414 ELAACIGSGMDAARAATPHIEIDSLAQAEKWLDENIREGDCILFKGSNSMKLSEAVKHLK 473

Query: 466 E 466
           E
Sbjct: 474 E 474


>gi|317132988|ref|YP_004092302.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470967|gb|ADU27571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Ethanoligenens harbinense YUAN-3]
          Length = 456

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 18/459 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +L A  G             +S D+R+I P   F A++G  +DG+ ++  A +KGA
Sbjct: 5   TLDFILNATGGRLTRACFNCRCTDVSTDTRTIRPGSLFIALRGARFDGNAYLKTAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +              PV  VDD   AL  LA A R R    ++ +TGSVGKT+TKEM
Sbjct: 65  SIALAERPCPGW------PVVLVDDAYVALRALAAAYRRRFSLPVVGVTGSVGKTSTKEM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   +T    G+ NN IG+P+++  +    +  +FE+GMS  GEI  L+ +  P 
Sbjct: 119 IFSVLSQAFRTLKNEGNLNNLIGMPMSVFGLERQHEAAVFEMGMSAFGEISALSQVAAPD 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I  +H+      E I  AK EI +G+   G + LN DD     L A       +
Sbjct: 179 IGVITNIGVSHIEMLGSQENILKAKLEILDGMRPGGKLILNGDDP----LLAGVQTDKAE 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I    ++    +   + +  +E +   ++  G S+       G H   N L    +  +
Sbjct: 235 VITYGIENTGCAYTAEEVESGAEGTAFCLRYPGGSIAARLQVAGKHNVYNALAAFAVGRV 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  + DT       + P   R    +     G  T +++ YNA+P SM++A  VL  +  
Sbjct: 295 LGMEPDTIAAGFLQYAPTGYR----QKIERVGGVTFVEDCYNASPDSMRSAFDVLRTV-- 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423
              GRR+AVL DM E+G+ +   H  +    +   +  ++  G +    ++         
Sbjct: 349 QKTGRRLAVLADMLELGDTAPDAHRAVGREAAENGVDVLFSYGENARYYQEGYTQAGGTQ 408

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +      L   +   L +GD V+ K S       +I 
Sbjct: 409 GAHFTDKAALTDALCQMLREGDAVLFKGSRGMRLEEIIQ 447


>gi|153875092|ref|ZP_02003039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
 gi|152068444|gb|EDN66961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Beggiatoa
           sp. PS]
          Length = 433

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 136/447 (30%), Positives = 202/447 (45%), Gaps = 28/447 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++  A+     G   +    G SID+R+I P   + A++G  +DGHDF+  A
Sbjct: 1   MIEL-TLSEVAPALGTTWKGQ--EIKFTGCSIDTRNIKPGTLYVALRGERFDGHDFVKDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA  ++V  D+V       +P   V D   AL  LA   R R    ++AITGS GKT
Sbjct: 58  QQKGASAIIVERDVV-----CDLPTLRVADTRKALGDLARFWRQRFDLPVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYAC-------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TTKEML    +      +         G+ NN IGVPLTL  +  +  + I E+G +H G
Sbjct: 113 TTKEMLKTIFTQKISAESNEINVLATQGNLNNDIGVPLTLFNLQANHRYAIIEMGANHAG 172

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI +LT + +P +A IT  APAHL  F  +E +A AK EIF  L + G   +N DD++  
Sbjct: 173 EIAYLTQMAKPSVATITQCAPAHLEGFKSVEGVALAKGEIFSHLTEDGIAIINNDDAYTT 232

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L            I +F     AD   +  +   +     +  Q   + +     G H  
Sbjct: 233 LW---HELAASHQINTFALENTADVTAKDIQLNEDSCDFILHTQKSDIAIHLPLPGQHNI 289

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L            ++   + L    P +GR + ++        TLID++YNANP S+
Sbjct: 290 MNALTASACALACGCSLEIIQQGLQNMQPVKGRLQLHKING----ITLIDDTYNANPTSL 345

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AA+++LS   P        +LGDM E+G+ S  FH    +      + H+W  G     
Sbjct: 346 NAALAILSNYPP----PYWLILGDMKELGQKSAEFHQQAGQRAREVGVEHLWAIGDLSRY 401

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSS 440
             D+       ++    D L   +Q+ 
Sbjct: 402 AVDSFGEG--AYHFTNHDELINSLQNQ 426


>gi|328952334|ref|YP_004369668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452658|gb|AEB08487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 463

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 206/471 (43%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +++  D++    G  +     G   G+S DSR+    E F  ++G  +DGHDFI  A
Sbjct: 1   MSAVFSVRDIIACTGGRLLQPGAGGNFVGVSTDSRTAQAGEIFIPLRGERFDGHDFIDRA 60

Query: 61  VQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           +++G   +V                + +  V + L AL  LA   R R    +IAITGS 
Sbjct: 61  IKRGVRALVAAEAWWQRQNHQFPKDLTIVLVPETLRALGDLAHCWRQRFSGPVIAITGSC 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+ + L+S  +      + NN IG+P TL  +    +  + E+GM+H GEIR 
Sbjct: 121 GKTTTKEMIALVLASRFRVLKNELNLNNLIGLPQTLLALNTGHETAVVEMGMNHFGEIRR 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP IAV+T +  AHL     +E +A AKAE+ +GL   G I  N DD   + L+A
Sbjct: 181 LAQIARPDIAVVTNVHAAHLEGLGSLEGVAQAKAEVIQGLRNNGLIIYNADD---QRLRA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             H    +T+                +        E++ QGK   +     G H   N L
Sbjct: 238 ALHHFKGQTLSFGFDPGAQIQAGPPCQCGVWGQRAEIRHQGKIWPLELQLPGRHQLYNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    +   +AL  F   + R +            + ++ YNANP SM  A+
Sbjct: 298 AAAAVGLALGLPAEQISQALGRFAGLKHRSQMQCHTSGIH---IFNDCYNANPGSMAMAL 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +    +GR +A LGDM E+G  +   H  L  + +   +  + + G    +++  
Sbjct: 355 QTLASL--KNQGRAVAALGDMLELGRETIPAHRQLGALAAQLQVDLLVVWGKFKDSVRQG 412

Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     ++   +       I+     GD ++VK S      +L+  L
Sbjct: 413 ALAAGMPHSRIYLVASHAEGADIIRGFCRPGDTLLVKGSRGATMEKLLACL 463


>gi|166032105|ref|ZP_02234934.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
 gi|166027828|gb|EDR46585.1| hypothetical protein DORFOR_01808 [Dorea formicigenerans ATCC
           27755]
          Length = 465

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 193/470 (41%), Gaps = 20/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A  G   G        V G++IDSR +     F AI G   + H FI 
Sbjct: 11  MKNL-TLRNITKACHGEYRGPENLLDKEVAGVTIDSRKVEKDYLFIAIDGERVNAHKFIP 69

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  V+ + D    +G    P   V+    AL   A   R      ++ ITGSVG
Sbjct: 70  DTIKKGAMCVISHED----LGETDFPYILVESTGQALLDTAKLYRDSFDIKVVGITGSVG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   LS     +  +G++NN  G+P+T+  M       + E+G++H GE+R L
Sbjct: 126 KTSTKEMIASVLSQKYCVHKTLGNFNNEWGLPITIFEMNEKHQVAVLEMGVNHFGEMRRL 185

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     L   
Sbjct: 186 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKTGGSILLNGDDD----LLRD 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +       FG  KN  F     +      S   + L           +         
Sbjct: 242 MGPVKGVDPEFFGLGKNCQFYATDVESLGLRGSSCTIHLPSGESFDCIVPLPGAHMVQNA 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    V          IKA     P           +      ++D+ YNANP SM+A++
Sbjct: 302 LAGTAVGYQLGLTPAEIKAGIEGLP---SIPGRNNIIQTDKIIILDDCYNANPISMQASL 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+       GR++AVLGDM E+GE  +  H +         I  V   G     L   
Sbjct: 359 DVLNMAI----GRKVAVLGDMGELGETGKELHYETGAHAGDIGIDLVCGIGELSKELVAG 414

Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                    +          ++  +  GD ++VK+S+   F  +++ L +
Sbjct: 415 ASEHGCEAKWFPAKADFLAEMKHLIQPGDNILVKASHGMQFPEIVDELQK 464


>gi|16799923|ref|NP_470191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria innocua
           Clip11262]
 gi|16413300|emb|CAC96081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Listeria
           innocua Clip11262]
          Length = 457

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 210/464 (45%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V++ L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKDV--PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  GL  +G +   ++++         +  G 
Sbjct: 182 DIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS  A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSDAAEIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 296 EIGIEGEKIQSALKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421
             G+  +  VL DM E+G+LS   H + AEVL    I  ++L G  + A     +A    
Sbjct: 353 SKGK-PKYLVLADMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQ 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 412 GKVQHFDTKESLETALLSEINGNEWILVKGSYGMGLKDVVENLI 455


>gi|326802989|ref|YP_004320807.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650266|gb|AEA00449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 462

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 203/472 (43%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L   +++++A+             +  ++ +S+ I P   F  +K    DGHDFI  
Sbjct: 1   MKALA-INEIVKAVGAVDYDSTAAHNLITSVAFNSKEIKPGGLFIPLKAAR-DGHDFIQD 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +   D   +     IPV  V+D   A   LA          +IA+TGS GK
Sbjct: 59  AIDHGAQATLWAND--PADAPSEIPVIQVEDTFTAFVDLAKYYLGLIGPKVIAVTGSAGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    LS+    Y   G+YNN +GVP T+  MP D +  + E+GMS  GEIRFL 
Sbjct: 117 TTTKDMTAATLSTTFNVYKTQGNYNNQLGVPFTILSMPEDTEVLVVEMGMSGPGEIRFLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L    +AVIT I  +H+      E IA AK EI EGL++ GT     D+   +      
Sbjct: 177 QLCPMDVAVITMIGESHIEFLGSRENIAKAKLEILEGLKEDGTFIYPGDEPLVD---QAV 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +        G   + D          E +     L       +          N+   
Sbjct: 234 VDMPEIKKIRVGLDDSEDVYAENIVNEREHTHFYTNLSPNVELSI----PVSGDYNVKNA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L   ++  +      +  +     +    R    + +    +++++YNANP++M+A I  
Sbjct: 290 LMACAVAYSQGLAVEQIKTPLSQFKLTANRSEWLMGKDDIQILNDTYNANPSAMRAVIRN 349

Query: 360 LSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            SQ+  P     ++ VLGDM E+G+ S S H  +AE +   +I  V+L G  + AL  AL
Sbjct: 350 FSQLERPAVTSHKVLVLGDMLELGKYSASMHASIAEEIDSPHIDGVYLYGKEMQALARAL 409

Query: 419 PRSI----HVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                    +HY  E    L   +   +   D ++VK+S+  G   ++  L 
Sbjct: 410 QEKGYPEDKIHYYPEDKAALIKDLLDQVQSQDQILVKASHGMGLAEVVAALK 461


>gi|256832302|ref|YP_003161029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685833|gb|ACV08726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Jonesia
           denitrificans DSM 20603]
          Length = 509

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 209/469 (44%), Gaps = 21/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T  ++     G          V G ++IDSR+++  + F A+ G   DGHD+   A  +
Sbjct: 46  FTAQEIASITGGELSC-PSDVTVTGQVTIDSRTVSTGDLFVAVVGERSDGHDYACVAHSQ 104

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGK 119
           GA LV+   ++        +P   V D   AL  LA A     R +    +I +TGS GK
Sbjct: 105 GAVLVLSQKNI------KGVPCVVVADTQRALGDLARAHLARLREKGHIRVIGVTGSAGK 158

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   L++        GS NN +G+PLT+ +     DF + E+G S +G++ +LT
Sbjct: 159 TTTKDLMGQMLATYGNVVVPAGSLNNELGLPLTVLKADETTDFLVTEMGASAVGDLHYLT 218

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +    IAV+  +  AHL  F   E +A AK+E+  GL   G   LN DD     +K  +
Sbjct: 219 SIAPLDIAVVLIVGLAHLGGFGSAELVAQAKSELVTGLLPQGIAVLNADDHRVIAMKELA 278

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           H      + +FG  + AD +    +  +                                
Sbjct: 279 HGQ----VRTFGSVRGADMRAINARTDAAGRAHFDVETTAGDTASVTLTLVGEHHVTNAL 334

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + ++    +     A+++   +     R          T+ID+SYNANP SM+AA+  
Sbjct: 335 AALTAVTALGMPLDQAAVALSAARATSPHRMDVVDRPDGVTIIDDSYNANPDSMRAALRA 394

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
           L+ ++   + R +AVLG+M E+G  S+++H D+  ++   NIS + + G     + D   
Sbjct: 395 LATVAG-RQRRTVAVLGEMRELGPQSRTYHDDIGRLVVRLNISRLIVVGQGAQGIADGAL 453

Query: 419 ---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   V     ++     +   L   DVV++K+S+  G ++L + L
Sbjct: 454 QEGSWGDEVVEVADLNAAHAALNDYLQPNDVVLIKASHGSGLWQLADEL 502


>gi|83953996|ref|ZP_00962717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841941|gb|EAP81110.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 478

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 161/476 (33%), Positives = 242/476 (50%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G +IG       +G+SID+R++AP + F A+K    DGHDF+  A
Sbjct: 1   MS-LWTAKEAESATGGRAIG---DWTCDGVSIDTRTLAPGDLFVALKDVR-DGHDFVAMA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V    V    +   P+  V+DVL  L  L  AAR R++A ++A+TGSVGKT
Sbjct: 56  LEKGAGAALVTH--VPEGVAEDAPLLIVEDVLKGLEALGAAARARTQAKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML    +   + +A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  
Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPADTEYAVIEIGMNHPGEISPLAQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A++TT+A  HL  F+ + EIA  KA +F+GL+  G   +N D     +L AK+ 
Sbjct: 174 MAKPDVAMVTTVAAVHLEAFANVAEIAVEKAAVFDGLQPGGVAVINADIEHAAILMAKAV 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++ +          ++L   +   + + +     G  +       G H A N L  L
Sbjct: 234 DRRLREVEF--GEHGYQYKLLDVQVQGDTTVVRADADGTPLLFKIGTPGRHFAMNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                + AD+  A  +L  + P +                    LID+SYNANP SM AA
Sbjct: 292 ASAQAMGADLALAAASLGRWTPYKGRGVREVIHLDVVDTHLTLNLIDDSYNANPTSMAAA 351

Query: 357 ISV------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V         I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  
Sbjct: 352 LEVLAAAEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L D LP      ++ET   L   + S L  GDVV+ K S S     +++ + +
Sbjct: 412 MKSLYDLLPAHQRGEWAETAADLLPALSSHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|331701931|ref|YP_004398890.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129274|gb|AEB73827.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus buchneri NRRL B-30929]
          Length = 462

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 219/470 (46%), Gaps = 18/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T  ++ QAI  ++           + G+  DSR I   + F  +   H DGHD+I +A+
Sbjct: 3   MTIGEVAQAINANTENFDKAMLDESLTGVCFDSRKIQAGQLFVPLVAEH-DGHDYIDNAI 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +  +D  A    L+IP   VDD+L A  +L+     +    +IA+TGS GKTT
Sbjct: 62  AGGASATLWASDH-ADRLPLTIPALVVDDLLTAFQQLSKYYLDKINPRVIAVTGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK+M+   LSS         ++NN IG+P T+ +M  + +F + E+GM   G++ FL+ L
Sbjct: 121 TKDMIAAILSSTFNVTKTQDNFNNEIGLPYTILQMESNTEFLVAEMGMDRPGQLDFLSKL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +AVIT I  AH+  F   ++IA AK EI  GL+  G    + D+        +   
Sbjct: 181 ARPDVAVITMIGEAHIEFFGTRDKIADAKMEITHGLKADGFFVYDGDEPLLTERAQQVDE 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  +FG+  + D      K   +            ++     IG +   N L  + 
Sbjct: 241 --SVIKATFGRKDSNDVFAIDSK-DGQYQTQFHVNLWPEIDFTIPMIGDYNVNNALAAIS 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  I           L+ F   +    R +         ++ + YN+NP + K  ++   
Sbjct: 298 VGRIFRIHPQMMADKLAKF---DLTKNRTQWLSGSKGERILSDVYNSNPTAAKEVLTAFK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--- 418
             +   +GRRIAVLGDM E+G  S++ H  LA+ L   +I  V+L G  + AL + L   
Sbjct: 355 NTT--TKGRRIAVLGDMLELGTQSKAMHASLADALDPASIPVVYLIGADMDALYEKLKPV 412

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             P ++H + ++ +D L   +Q+ L   D V++K+S+      ++  L++
Sbjct: 413 YAPENLHYYQADQLDELTSDLQAELSADDEVLLKASHGLHLENVVAKLVK 462


>gi|116333165|ref|YP_794692.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus brevis
           ATCC 367]
 gi|116098512|gb|ABJ63661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus brevis ATCC 367]
          Length = 461

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 205/466 (43%), Gaps = 19/466 (4%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++  A+   +         V  ++ DSR + P   F  + G H DGH FI  A+  GA
Sbjct: 5   LAEIAHAVGAINDFEQWGSVSVTSVAFDSRHLQPGGLFIPLTGEH-DGHQFIQSAIDHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   D+ ++      PV  VDD L AL  LA     +    ++A+TGS GKTTTK+M
Sbjct: 64  VATLWARDLASA--PADFPVIQVDDSLKALQTLAQYYLSKINPRVVAVTGSNGKTTTKDM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS+         ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ LV P 
Sbjct: 122 IAAVLSTQFNVTKTHANFNNEIGVPMTVLSMEPNTEMLVVEMGMDRPGQLDFLSQLVSPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT I  AH+  F   ++IA AK EI  GL   G    N D+     L  +      +
Sbjct: 182 LALITMIGEAHIEFFGTRDKIADAKMEITHGLSDDGVFVFNGDEP----LLRERATELTQ 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG+    D            +      Q   +      IG +   N L  L +  +
Sbjct: 238 RQVTFGQQGTDDLFATDVTGTP-TTTSFTTNQWPEVTFTIPMIGTYNVNNALAALSVAML 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                ++A +AL+          R     +     ++ + YN+NP + K  ++  SQ   
Sbjct: 297 YRIRPESAKQALAT---VSLTENRAEWVTSASGAAILSDVYNSNPTAAKEVLTAFSQTPV 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSI 422
              G+R  VLGDM E+G+ + + H  LA  +    I HV+L G H+    A        +
Sbjct: 354 --TGQRYVVLGDMLELGDQADAMHASLASAIDATKIDHVYLVGPHMLALQAALAQQQPQL 411

Query: 423 HVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V + E   +  L + +Q+ L   D +++K S+     +++  L +
Sbjct: 412 AVSHYETTDLATLTVDLQNQLTADDQILLKGSHGIHLEQVLASLQD 457


>gi|293383724|ref|ZP_06629631.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
 gi|291078800|gb|EFE16164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecalis R712]
          Length = 474

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GK TTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKNTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|94312063|ref|YP_585273.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
 gi|93355915|gb|ABF10004.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Cupriavidus metallidurans CH34]
          Length = 466

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 200/477 (41%), Gaps = 27/477 (5%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  P+ T       I G SI        + +  DSR++ P + F A+KG  +D HDF+ 
Sbjct: 1   MNRQPMTTLQQAAGWIAGASISGDATCSFSRVHTDSRTVEPGDLFVALKGERFDAHDFLA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V +GA  V+V+  +      + +P   V D    L +LA   R       +A+TGS G
Sbjct: 61  DVVARGAAAVMVSRKV-----DVDVPALIVPDTRTGLGQLATGWRRTFTPPTVAVTGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+    ++           G+ NN IG+PLT+ R+       + ELGM+H GE 
Sbjct: 116 KTTVKEMIAAIFAAAVGEGDRLATGGNLNNDIGLPLTVLRLRAHHKLAVLELGMNHPGET 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  + +P +AV+T     H      +E +A   A     L   G      D       
Sbjct: 176 IYLAGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHASAIAALPADGVAVFPVDAESGGAY 235

Query: 236 KAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A    A G + + SFG   +AD +       +    ++V    +   +  H +G H  +
Sbjct: 236 AAIWRQAAGTRKVLSFGTDASADVRAT-VSLENGVQVLDVTAPDRRFTLRLHVLGVHNVR 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L           DV      ++ F   +GR    +         +ID++YNANP SM+
Sbjct: 295 NALAATACALAAGVDVAAIQAGIAGFTAVKGR---LQVKHTPAGTVVIDDTYNANPDSMR 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+  +      R+ VLGDM E+G+    FH ++        I  +W +G      
Sbjct: 352 AAIDVLAGFAT----PRLLVLGDMGEVGDQGPMFHTEIGAYARERGIDALWATGELAPHA 407

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-----VVVKSSNSCGFYRLINLLLE 466
             A        Y    + L   +++   +G V     V+VK S      R+++ L+ 
Sbjct: 408 VQAYGGGAR--YFARAEDLAQALEAD-KEGTVANAAAVLVKGSRFMRMERMVDALVA 461


>gi|194467657|ref|ZP_03073644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
 gi|194454693|gb|EDX43590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Lactobacillus reuteri 100-23]
          Length = 459

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V+D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVNDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM    ++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVTKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFDQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+     L  +     
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           +       +    E     +G +   N L  + + 
Sbjct: 236 TQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E    R      +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
               +GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 PV--DGRRIAVLGDMLELGDAAPKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               IH + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|163939991|ref|YP_001644875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862188|gb|ABY43247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 454

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 21/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  +     L + + G  +        ++G+ IDS++I     F  I      DGH ++ 
Sbjct: 1   MIQM-NLKKLEEVVDGVGLQESFHHIEIHGVCIDSKNIKEGNLFVPII--RVKDGHGYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +             IP+  VDD L AL +LA   R      +I ITGS G
Sbjct: 58  EAMDNGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT K++++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L
Sbjct: 116 KTTVKDIISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + + +P +A+IT I  +HL      EEI+ AK EI +GL++ G +  N D    E L ++
Sbjct: 176 SQIAQPDVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            + + +    SFG+    D      +        ++       +V  HG    +   + +
Sbjct: 232 KNNVLVLECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNTIVGI 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +G    +  +                   R++    +  FT+I++++NA+P+SMKAAI 
Sbjct: 292 AVGQFYNVPTEKIQDA-----LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +++ + +   I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G     + +  
Sbjct: 347 TLQKLNAYKKK--IIVIGDMLELGKEAETYHREIGKMLNQENISYVFTYGEMAEIVAEEA 404

Query: 419 PRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +      V        +   +   +   DVV++K S       ++ 
Sbjct: 405 RKKYDTGKVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 451


>gi|295099012|emb|CBK88101.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium cylindroides T2-87]
          Length = 453

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 201/466 (43%), Gaps = 14/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  ++   +    +G      + G+ IDSR I     +  + G   DGH FI   
Sbjct: 1   MI-VKTIQEIADMLNCDLVGEDKTSLIQGVGIDSRQITENALYIPLIGQRADGHTFIDSV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +QKG    +   D         I    VDD L AL  LA A        +I +TGS GKT
Sbjct: 60  IQKGVKATLWQKDHTPY--PEDITCILVDDTLEALQNLAKAYLNTLSCLVIGVTGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K+ML    S  KKT    G+ NN IG+PLT+  +  DV+  I E+GM + GEI FLTH
Sbjct: 118 SCKDMLYSIFSQEKKTQKTQGNRNNEIGLPLTVLDLDKDVEVAILEMGMENKGEIDFLTH 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP +++ITTI  AH+ N  G ++IA AK EI E L+  G    + +    +    +  
Sbjct: 178 IARPDVSIITTIGSAHMENLGGKKQIAQAKLEILENLKPGGLFLYDKESPEIQECLLEMD 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K + SFG                 ++ +E      + ++  + +G   A+N L  +
Sbjct: 238 IDPSKRLVSFG---FNGDISIISSIDYTENGIEFYCSSLTDKITLNALGDFQAKNALPCI 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +         + +K L          K     L      +ID++Y +NP S KAAI  L
Sbjct: 295 YVALDQKISTSSILKGLKDLE----MTKMRTALLKVHDAKIIDDTYKSNPESAKAAIDTL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++        IAVL DM ++G      H  +       N+  V+ +G        A   
Sbjct: 351 MKVQAKK---HIAVLADMLDLGPEENDLHAMIGCYAVEKNVDTVYATGPLSKYTIKAC-T 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +I   + ET D +   ++  L +   +++K S +     +++ L E
Sbjct: 407 NIESKWFETKDEIVEELKHLLNEDCAILIKGSRAMHMDEIVDKLKE 452


>gi|42520932|ref|NP_966847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
 gi|42410673|gb|AAS14781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila melanogaster]
          Length = 509

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 148/514 (28%), Positives = 241/514 (46%), Gaps = 58/514 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIAFKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+          S P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AIAAIVSEGKYK-----SFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + ++  
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRN 238

Query: 243 ----------------------------------------------GIKTIYSFGKSKNA 256
                                                                + K    
Sbjct: 239 VISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIP 298

Query: 257 DFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +  +   +  +  S        + +       G H A ++L    +V  L  D+    
Sbjct: 299 ASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLP 358

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S   +   +A+
Sbjct: 359 LALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VAL 415

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   +    + L 
Sbjct: 416 LGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLK 475

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + + + + D ++VK S       ++   + ++
Sbjct: 476 SDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509


>gi|42781309|ref|NP_978556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
 gi|42737231|gb|AAS41164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, degenerate
           [Bacillus cereus ATCC 10987]
          Length = 451

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 219/463 (47%), Gaps = 20/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + + G  +        ++G+ IDS+++     F  I      DGH+++  A+ 
Sbjct: 1   MNLKKLEKVVNGEGLQESFHLIEMHGVCIDSKNMKEGNLFVPII--RVKDGHEYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRRELNVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + 
Sbjct: 117 KDIIGGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSRIA 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L +++  +
Sbjct: 177 QPDVAIITMIGQSHLETLGSREEIAKAKFEIIDGLNDDGLFLYNGDEP----LLSQNINM 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG     D      +   ++  +  +L    ++      G H   N ++ + +
Sbjct: 233 LGIESKSFGGKYTNDLFPTNVQL--DEYGVHFKLNNTKIQYDVPLHGKHNILNAIVGIAV 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  ++   +AL           R++    +  FT+I++++NA+P+SMKAAI  L +
Sbjct: 291 GQFYKVPIEKIQEALQQ---INITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQK 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           ++ + +   I V+GDM E+G+ ++++H ++ ++L+  +I +V+  G     + +   ++ 
Sbjct: 348 LNAYEKK--IIVIGDMLELGKEAKTYHREIGKMLNEESIQYVFTYGALSEIVAEEARKNY 405

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
               V   +  D +   I   +   DVV++K S       ++ 
Sbjct: 406 HTEKVQSFDNKDEIAEEILKVITKKDVVLLKGSRGMALEEIVQ 448


>gi|256617718|ref|ZP_05474564.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|257089259|ref|ZP_05583620.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|256597245|gb|EEU16421.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256998071|gb|EEU84591.1| conserved hypothetical protein [Enterococcus faecalis CH188]
          Length = 457

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +         + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 3   LTFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 62  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 120 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 180 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 236 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 294 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 351 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 409 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 457


>gi|146295955|ref|YP_001179726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409531|gb|ABP66535.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 450

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 220/468 (47%), Gaps = 24/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW   ++ + +  +         +   SI+S+SI     F  +KG  +DGHDFI  A
Sbjct: 1   MS-LW-LSEIAETLHTNIENFRDDVLIESFSINSKSIGKNTLFIPLKGNKFDGHDFIQEA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGK 119
           + +GA   +   D+       S P   V+D L A+  LA A R  R    +I ITGSVGK
Sbjct: 59  ISRGAISFITQKDV---NTEKSCPYLKVEDTLKAMQILAKAYREKRKDLIVIGITGSVGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE +   LS+  ++Y   G++NNHIG+P ++  +P +V     E+GMS+ GEI FL+
Sbjct: 116 TTTKEYVFNVLSNKFRSYKNEGNFNNHIGLPYSILNIPDEVKVATLEMGMSNFGEISFLS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P+I +IT I  AH+ N      I  AK+EI +G+   G + +N D+      + + 
Sbjct: 176 KIAKPNIGIITNIGVAHIENLKTRYNIFLAKSEIQDGMPNDGILIINNDNDILYSHRHEL 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + + G   +ADF+ +  ++     +        + +       +H   N L  
Sbjct: 236 ----KRKVVTVGIENDADFRAKDIQKVDNGFFFV----VSNHKYFIESFNFHDIYNSLFA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  IL  + +   K +        R       + +   T++D+SYNA+  SM +AI+ 
Sbjct: 288 IAVGEILGIEKEAIEKGILKKCGLRRRF----EVIKKDGLTVVDDSYNASTHSMMSAING 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +   S    G++I VLGDM E+GE S+  H  + + +    I  +  +G     + D + 
Sbjct: 344 VCGFS----GKKILVLGDMLELGEFSEQEHRKVGKYIVSKPIDVIICTGKDAFYIFDEVR 399

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++      Y  + +     ++  +    VV+ K+S       L++  L
Sbjct: 400 KNSSSIKAYYASKEECLNILKKEIEIETVVLFKASRGMKLDELVDNFL 447


>gi|255029324|ref|ZP_05301275.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes LO28]
          Length = 447

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 201/445 (45%), Gaps = 15/445 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  D+R I   + F    G   DGH+F+  A + GA       ++         
Sbjct: 13  DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMGAVATFWQKNV--PNPPTDF 70

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 71  PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EEIA AK EI  G                E L    +  G     +FGKS+ A+    + 
Sbjct: 191 EEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +E +      +   +E+    IG H   N +  +     +  + +    AL      
Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME-- 302

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R      +    +++++YN++P ++K  +     +   G+  +  VL DM E+G+
Sbjct: 303 -RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  V+L G  + A  +     I    VH+ +T + L   + S 
Sbjct: 361 LSTKLHQESAEVLENDTIQKVFLYGDAMKAFGEVAESKIGQGKVHHFDTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 IKGNEWILVKGSYGMGLKDVVENLI 445


>gi|166365059|ref|YP_001657332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
 gi|166087432|dbj|BAG02140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Microcystis aeruginosa NIES-843]
          Length = 450

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 211/471 (44%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    + + L Q +     G     P   V+GI+ DSRSI   +AF A+KG +++GHDFI
Sbjct: 1   MAFHLSLNQLAQLLSLQDNGDISFSPDSLVSGINTDSRSIESGQAFLALKGDNFNGHDFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A++KGA  ++V+  +  +  S +IPVF V + L    +LA   R +    +IAITGSV
Sbjct: 61  DMAIEKGAATLIVDQPVSVNS-SSNIPVFLVHNTLETYQQLAHWWRNQFTIPVIAITGSV 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L++  K +  + +YNN IGVP TL  +    +  + E+GM   GEI  
Sbjct: 120 GKTTTKELIASVLATQGKVHKTLANYNNEIGVPKTLLELDETHNSAVIEMGMRGRGEIAL 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP IAVIT +  AH+        IA AK E+      +    LNYD         
Sbjct: 180 LAQITRPTIAVITNVGTAHIGRLGSEAAIAEAKCELLAESPSSSIAVLNYDHPLLTETAK 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       T    G                 +      L+   ++      G H A N +
Sbjct: 240 RVWQGETITYGFSGGD------------IVGELLDLTTLRVNGLDFNLPLSGRHHALNFM 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  IL  D  +  + + V  P     +            L+DE+YNA   SM   +
Sbjct: 288 AALAVAKILGIDWTSLQEGIKVNLPSGRAKRYQ----LATDILLLDETYNAGLESM---L 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
           + L  +      R IAVLG M E+G  S+  H  + E +    I  +++         + 
Sbjct: 341 AALDLLKATPGQRHIAVLGTMKELGSFSEQLHRQVGERVQKLGIDRLFVLVDDPEAKFIA 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +A   ++     +T   L   ++  +  GD ++ K+S+S G  R++  L++
Sbjct: 401 EAA-TAVDCECFQTHADLINRLKEVIDFGDRILCKASHSVGLNRVVEELIQ 450


>gi|73662110|ref|YP_300891.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494625|dbj|BAE17946.1| UDP-N-acetylmuramyl pentapeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 451

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 197/466 (42%), Gaps = 16/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   I            + G+SIDSR I  Q  F   KG H DGH ++  A
Sbjct: 1   MIEV-TLEQIKTWIPCEIENEFMDHGIKGVSIDSRDIHNQNLFIPFKGEHVDGHKYVAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GAG             ++  P+  VDD L AL  LA A        +IA+TGS GKT
Sbjct: 60  LKDGAGAAFYQK-GEPLDENIDGPIIWVDDTLEALQHLAKAYLEFVNPQVIAVTGSNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   L    K     G+YNN IG+PLT+ ++ +D +  I E+GMS   EI  L+ 
Sbjct: 119 TTKDMIESVLKPQFKVKKTQGNYNNEIGMPLTILQLDIDTEISILEMGMSGFHEIELLSK 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P IA+IT I  +H+ +    E IA AK+EI  GL+  G    + D+   E    +  
Sbjct: 179 LAQPDIAIITNIGESHMQDLGSREGIAKAKSEITLGLKPGGLFIYDGDEPLLEPYANEIQ 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    SFGK+ +                  +             +G H  +N  + +
Sbjct: 239 NADL---VSFGKNSDNTLVSTIETIKDHGIAFTINHDEH---YELPILGEHNMKNATIAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L     T     +        G R      +    +I+++YNA+P SMKAAI  L
Sbjct: 293 AVGKRLNLTYQTI---FNNLKNVVLTGMRMEQHHTKDEILVINDAYNASPTSMKAAIDTL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALP 419
           S +    EGR+I VLGD+ E+G  SQ  H  +       +I  ++  G     +      
Sbjct: 350 SGM----EGRKIIVLGDVLELGPDSQIMHEAVGLYFEDKDIDALFTLGNEAAHISHTGKA 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   +    L   ++  +   D V+VK S       ++  L+
Sbjct: 406 FVKKSEAFKEKADLIRSLKGYVQANDKVLVKGSRGMKLEEVVEALI 451


>gi|293573031|ref|ZP_06683973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
 gi|291606933|gb|EFF36313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E980]
          Length = 450

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLVGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|219854426|ref|YP_002471548.1| hypothetical protein CKR_1083 [Clostridium kluyveri NBRC 12016]
 gi|219568150|dbj|BAH06134.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 474

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 122/466 (26%), Positives = 209/466 (44%), Gaps = 14/466 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F D+++A+ G  I          IS DSR +   + F A+KG  ++G++++  A +KG
Sbjct: 15  MSFDDIVRAVSGKVILKGKYKGHKNISTDSRKLQKGDIFIALKGEKFNGNEYVESASKKG 74

Query: 65  AGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+     S        +  V +   AL +LA   R +    II +TGSVGKTTTK
Sbjct: 75  ASICIVDEVKFESEKISEFTTIIKVQNGNTALLELAEFYRSKLDVKIIGVTGSVGKTTTK 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L    K +   G++NN IG+P  L ++    +  + E+GM+  GEI  +    R
Sbjct: 135 DIIAAVLGVKFKVFKTEGNFNNQIGLPHMLFKLDNSYEVAVLEMGMNQRGEIHNMVKAAR 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    + I +AK EI +   K  T+ +N D+     L+ K+  L 
Sbjct: 195 PDIAVITNVLRAHIGNLGSRKNILNAKLEITDFFSKENTLIINSDNDLLSTLEEKNFTLN 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G++ +        ++   +  +           + +  G +   N L+ +   
Sbjct: 255 ---RVGLGENSDVSAYDIVVEEDCIEFKVCKNNVKTEERFLINMPGKYNIVNSLLAISCG 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D   + +        R +  R       FT+I++ YNANP SMKAAI VL + 
Sbjct: 312 RLLNMSYDEIREGVKNIKLTSMRMEIIRKKE----FTIINDCYNANPESMKAAIDVLKEF 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---R 420
             + +   IAVLG M E+GE +   H ++       +I  +   G +    +       +
Sbjct: 368 KSNRK---IAVLGTMGELGEEAYKMHQEVGMYAGEKDIDLLIGIGEYKKDFERGFKSTNK 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +    +  + L  FI   +  GD ++VK+S       +I  L +
Sbjct: 425 KGNFMGFDKYEDLKDFILKYIERGDTILVKASRFMKLEIIIEPLKK 470


>gi|325479744|gb|EGC82834.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 459

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 123/464 (26%), Positives = 194/464 (41%), Gaps = 17/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + + + G           ++G+S DSR+I     +  + G  +DG  F+     KG
Sbjct: 5   NLGQIAEMLGGSLCDPNYKDVKISGVSTDSRTIQENNLYIPLVGEVFDGRLFVKECEDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +++ D      ++SIP   VDD L AL  LA + R      +I ITGS GKTTTK+
Sbjct: 65  ASAFLIDRDY-EIKNNISIPYIRVDDTLKALQDLARSYRKELNVKVIGITGSNGKTTTKD 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  KT   IG+ NN IGVP T+  +  D +  + ELG    G+I   +++  P
Sbjct: 124 LLYEVLSTKYKTQKTIGNLNNEIGVPKTILSLNEDTEIAVVELGTDKFGDISLTSNIALP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  +HL N    E I  AK EI EGL   G    N DD   +  K        
Sbjct: 184 DIAIITNIGDSHLHNLKSKEGILKAKMEIVEGLSDDGIFIYNGDDETMK--KEIDSYKVD 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + I SFG   + DF +++      +       +          +G H   N    L I +
Sbjct: 242 QKIISFGLEDDNDFVVKEIPSTPAKVSFSHDGE----TYDIPLLGRHNIYNGACCLLIAN 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  D +     L    P   R              ++D+SY +NP S+++ ++    + 
Sbjct: 298 ILGLDTNEVKSGLVKVRPANNRSSMIELDGFD----VLDDSYKSNPQSLRSGLATCKLLD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            +     I VLGDM E+G+     H ++   +   +I +    G     +      +   
Sbjct: 354 GYNNK--IVVLGDMLELGDKEDELHYEVGLDIDPKDIHYCLFFGDLSYHMYKGALNNFPK 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +    D L   ++S +    +V VK S+      +I  + 
Sbjct: 412 DRAFHFTDKDDLIDKLKSFITKSTLVFVKGSHGMHMEEIIESIR 455


>gi|323127672|gb|ADX24969.1| putative D-ala-D-ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 455

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + I  +    +N I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKIVDAQNNISDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A   LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + R
Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  +          E+  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGDYQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
           + +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L         
Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 403 EGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|309777768|ref|ZP_07672716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914452|gb|EFP60244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 464

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 119/473 (25%), Positives = 208/473 (43%), Gaps = 17/473 (3%)

Query: 1   MNPLW--TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ +   +   +++ +    I     +  + G+ IDSR +     +  I G + +GH ++
Sbjct: 1   MSKMIIRSIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGVNNNGHAYV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A++ GA  V+             + V  V+D   AL +LA A R +    ++ ITGS 
Sbjct: 61  QQAIEHGAKAVLWERK--EQNPPHEVVVILVEDTTVALQQLAKAYRDQLNLKVVGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L+    T   +G++NN IGVPLTL  +  + +  + E+GM +L E+ F
Sbjct: 119 GKTSTKDILASVLAKHFITQKTLGNFNNEIGVPLTLLSLSENCEAAVVEMGMENLNELSF 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT++VRP IA+I+ +  AHL N   +E IA AK EI EGL + G +  N D         
Sbjct: 179 LTNIVRPDIAIISNVGTAHLENLGTMENIAKAKLEIVEGLNEHGLLIYNGDQQLLRDAAV 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G   I +FGK  + D  +    Q  +     +        +   G    M     
Sbjct: 239 EKQIPGYIKIRTFGKEAHNDVIVSHVHQLEDGLRFSINEDDWVYHLDMIGKHQAMNATAA 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L+ +      A                 +      ++++SY +NP S  AA+
Sbjct: 299 WIAAKALGLSEEEIAEGFASVEKTGLRNE------LVKVNQCLILNDSYKSNPQSALAAV 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             + +     +   +AVLGDM E+GE S   H  L + +S Y+I  V   G     +   
Sbjct: 353 DTMEEFDIPYK---LAVLGDMLELGETSDMIHYTLGKDISRYHIQEVLTIGDMACYIAQG 409

Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++    V +    + L  +++  +    +++VK S       ++++L++E
Sbjct: 410 ARDNMEHTLVRHFTDKEALISYLKPYMHKECMLLVKGSRGMKLDEVVDVLVQE 462


>gi|224477066|ref|YP_002634672.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421673|emb|CAL28487.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 454

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 128/461 (27%), Positives = 200/461 (43%), Gaps = 15/461 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + I         Q  ++G+SIDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLKQIKEWIPCEIDDQYLQHKIHGVSIDSRNIDENNLFVPFKGENTDGHRFVEQALEDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G      D          P+  VDD L AL +LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GAAFYQNDAKPDHEIEG-PIIWVDDTLLALQELAKAYLKHVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L    K     G+YNN IG+PLT+ ++  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLKPAFKVKKTQGNYNNEIGMPLTILQLDEDTEISILEMGMSGFHEIELLSEIAHPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK EI  GL+  G    + D+    LLK     L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIARAKFEIVSGLKPGGVFIYDGDEP---LLKPHVDTLKDT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S G +++        +  +      +         +          NM      +SI
Sbjct: 241 EAISIGLAQDNSVVCSVEQHDAMGIAFTLNTNEHYQIPIL------GTHNMRNAAIAISI 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 +  +        +  G R          ++I+++YNA+P SMKAAI  L+ +  
Sbjct: 295 GKILGLSYEEIQENISKVKLTGMRMELHRTDSNISVINDAYNASPTSMKAAIDTLAAM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HV 424
             +GR+I +L D+ E+GE S   H  + + L    I+ +   G   + + +    ++   
Sbjct: 353 --DGRKILILADVLELGENSAEMHASVGDYLQDKGINLLLTFGDEAVHIYENGKANVDEA 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           H+    + L  FI       D +++K S       + + L+
Sbjct: 411 HHFNHKNELIEFITQHAQAEDEILIKGSRGMKLEEVSDALI 451


>gi|313899511|ref|ZP_07833020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312955618|gb|EFR37277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 462

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 116/466 (24%), Positives = 207/466 (44%), Gaps = 17/466 (3%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +++ +    I     +  + G+ IDSR +     +  I G + +GH ++  A+  G
Sbjct: 8   SIDAIIRMLDADYIENADIEEKIQGVCIDSRKVVEGNLYIPIHGANNNGHAYVQQAIDNG 67

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+       +     I V  VDD   AL +LA A R +    ++ +TGS GKT+TK+
Sbjct: 68  ARAVLWER--REANPPKEIVVILVDDTTAALQQLAKAYRDQLNMKVVGVTGSNGKTSTKD 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L+    T   +G+YNN IGVPLTL  +  + +  + E+GM +L E+ FLT +VRP
Sbjct: 126 ILASVLAKHFITQKTLGNYNNEIGVPLTLLSLSENCEAAVVEMGMENLQELSFLTQIVRP 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+I+ +  AHL N   +E IA AK EI EGL + G +  N D         +    G 
Sbjct: 186 DIAIISNVGTAHLENLGTMENIARAKMEITEGLGEHGLLIYNGDQQLLRNAAIEKQIPGC 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I +FGK +  D  + + +Q  +     ++ Q   ++++      +     +    +  
Sbjct: 246 IKIRTFGKDEQNDVVVHQVRQLPDGLCFSIKDQVYHLDMIGKHQAMNATAAWIAARALGL 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                                        +      ++++SY +NP S  AA+  + +  
Sbjct: 306 DEEEIAQGFASVEKTGL--------RNELVRVNQCLILNDSYKSNPQSALAAVDTMEEFD 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
              +   +AVLGDM E+GE S   H  L + +S Y++  V   G     +      ++  
Sbjct: 358 IPYK---LAVLGDMLELGETSDMIHYTLGKDISSYHLQEVLTIGDMACYIAQGARDNMEH 414

Query: 424 --VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             V +    + L  +++  +    +++VK S       +++ L++E
Sbjct: 415 TLVRHFTDKEELLNYLRPYMHKECMLLVKGSRGMKLDEVVDELVKE 460


>gi|225575666|ref|ZP_03784276.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037123|gb|EEG47369.1| hypothetical protein RUMHYD_03759 [Blautia hydrogenotrophica DSM
           10507]
          Length = 458

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/474 (26%), Positives = 202/474 (42%), Gaps = 22/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G   G        V  I+ DSR  AP   F  I G   DGH FI 
Sbjct: 1   MKNL-TLENIANVCNGIYRGDEKSRWTEVTAITSDSRQAAPGCLFVPIVGERVDGHSFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           + ++ GA   +   ++  +      P   V   L A+  +A     + K  ++ ITGSVG
Sbjct: 60  NVMEAGALATLSQKELPEAR----FPYIQVASSLQAVKDIAKFYLEQLKIPVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKE++   L          G++NN +G+PLT+ R+    +  + E+G+S  GE+  L
Sbjct: 116 KTSTKEVIASVLKEKYHILKTQGNFNNELGLPLTVFRLRDYHEIAVLEMGISDFGEMSRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + RP   VIT I   HL      + +  AK E+F  L++ G   LN DD     ++  
Sbjct: 176 ADIARPDTCVITNIGQCHLEFLGDRDGVLKAKTEVFRYLKEGGRAILNGDDDKLATIRQV 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                I    +      AD   +   +  +     + L      V     G HM  N L 
Sbjct: 236 QGKEPIFFGMNPAFPVYAD---QIQSRGLKGMSCRIHLPEAEFAVEIPMPGQHMVYNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +  +     +   + +    P  GR +          F ++D+ YNANP SMKA++ 
Sbjct: 293 AAAVGMVHGLTPEQIRRGIESLEPISGRFRMIE----TDHFLIVDDCYNANPVSMKASLD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---K 415
           VL        GR++A+LGDM E+GE  +  H ++ +      +  +  +G     +    
Sbjct: 349 VLKD----ALGRKVAILGDMGELGEQEKELHAEVGDHAGRCGLDLLICTGSLSRYMSEAA 404

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            A   ++ V Y      L   + S L DGD ++VK+S+   + RL+  L E++ 
Sbjct: 405 KAANPNLEVIYEVDSKKLERNLFSYLRDGDTILVKASHFMHYERLVQRL-EQYK 457


>gi|257881477|ref|ZP_05661130.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|294621794|ref|ZP_06700953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|314938931|ref|ZP_07846196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
 gi|314943518|ref|ZP_07850285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|314951547|ref|ZP_07854593.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|314991590|ref|ZP_07857066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|314994923|ref|ZP_07860050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|257817135|gb|EEV44463.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,502]
 gi|291598626|gb|EFF29684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium U0317]
 gi|313590905|gb|EFR69750.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a01]
 gi|313593874|gb|EFR72719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133B]
 gi|313596241|gb|EFR75086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133A]
 gi|313597890|gb|EFR76735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133C]
 gi|313641640|gb|EFS06220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0133a04]
          Length = 450

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|227550861|ref|ZP_03980910.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257893314|ref|ZP_05672967.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257896495|ref|ZP_05676148.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|293379274|ref|ZP_06625420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
 gi|227179959|gb|EEI60931.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX1330]
 gi|257829693|gb|EEV56300.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,408]
 gi|257833060|gb|EEV59481.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com12]
 gi|292642070|gb|EFF60234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium PC4.1]
          Length = 450

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 206/470 (43%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+            +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|254787001|ref|YP_003074430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
 gi|237683703|gb|ACR10967.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Teredinibacter turnerae T7901]
          Length = 458

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 123/459 (26%), Positives = 194/459 (42%), Gaps = 17/459 (3%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +G   + F   +S D+RS+ P + F A++G H+DGH +I  A++KGA  VVV+T    
Sbjct: 13  TLVGGDAEFFC--VSTDTRSLQPGDLFVALRGEHFDGHAYIAQAIEKGACAVVVDT---- 66

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +++P + V D + AL  +A   R   +  ++ +TGS GKT+ K ML         T
Sbjct: 67  VQAEIAVPQWVVKDTVRALGFIAANKRAEFEGAVVGLTGSSGKTSVKGMLEAVCRQAGPT 126

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
            A  G+ NNHIGVP TL R+     F I E G S  GEI +LT L++P +A++  + PAH
Sbjct: 127 VATAGNLNNHIGVPQTLMRLEQQA-FAIVEAGTSGFGEIAYLTSLIQPEVALVNNVMPAH 185

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS---FGKS 253
           ++ F  ++ IA  K +I+ G      +    D+   E L        I    S   + K+
Sbjct: 186 MAGFGSLDAIAQEKGDIYGGSNLRCAVINLDDNYAQEFLARNGGITTIGFTASPIQYEKN 245

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D  +       +                   +      ++   L   S   A     
Sbjct: 246 SGVDTLIYGECLTPDGMGCYSFDLVLEGNRFPVNLQVPGKHSVNNALAAASCAVALGVAH 305

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                     +G   R +    +   TLI+++YNANP SM+AA + L+          + 
Sbjct: 306 ELIAKGVSQFQGVAGRMQRVSTKCCHTLINDTYNANPGSMRAAANYLAHAK-----HSVM 360

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           V+GDM E+G    + H DL        I +++  G                 + E    L
Sbjct: 361 VVGDMGELGSDELAQHFDLGRYAKSQKIKNLFAVGELSKQTVAGFGEG--ATWFEDKVAL 418

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
              +Q   +   VV+VK S S     +I LL++     Q
Sbjct: 419 ASALQQQDLSDAVVLVKGSRSAKMEEVIELLVKNDEVSQ 457


>gi|291518127|emb|CBK73348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Butyrivibrio fibrisolvens 16/4]
          Length = 459

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 209/473 (44%), Gaps = 25/473 (5%)

Query: 5   WTFHDLLQAIQGHSI-----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            T   + Q ++G  I       +    + G   D+R +     F  + G   DGHDFI  
Sbjct: 4   MTLAHVAQVVKGQLILPEGREALKNSEIQGAVNDNRKVEKDFLFIPMVGARVDGHDFIED 63

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  KGA   +        + ++S P   V+D   AL ++A   R++    +I + GSVGK
Sbjct: 64  AFSKGALASLSERK----LENVSGPYIIVEDTKLALKQIATDYRMQLNIPVIGVIGSVGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKEML+  L++        G++NN IG+PLT+ R+  +    + E+G+S  GE+  L 
Sbjct: 120 TSTKEMLSSVLATKFNVLKTEGNFNNEIGLPLTICRIKDEHQVAVVEMGISDFGEMHRLG 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P   V+T I   HL      + I  AK E+FE + K GT+ LN DD         +
Sbjct: 180 DIAKPDYVVMTNIGQCHLEFLKSRDGILQAKTEVFEHMPKNGTVILNGDDDKL-----IN 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                     +G +           +    +   + L G+S E      G H   N L  
Sbjct: 235 ADTLGLNKIFYGLNGQEVSASDIVAEGMTGTRAVINLFGESFEATIQLPGTHNVMNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +  +L    +   K L       GR       +     T+ID+ YNANP SMKA+I V
Sbjct: 295 AAVGKVLGLSNEEIKKGLEKASTIAGRN----NVIEVRDITIIDDCYNANPVSMKASIEV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GR IAVLGDM E+G+  +  H ++ + L   +I +V+  G     + ++L 
Sbjct: 351 L----GKAPGRTIAVLGDMGELGDDERQLHYEIGQTLEDNHIGYVFTVGDLSEEINNSLS 406

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           +   S   H+   ++ +   +   +  GD ++VK+S+   F  ++  +   F 
Sbjct: 407 QKNSSCMAHHYTNVEAMLEDLLPIIRGGDTILVKASHFMNFSTVVEAIQTRFE 459


>gi|331004323|ref|ZP_08327798.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411389|gb|EGG90804.1| hypothetical protein HMPREF0491_02660 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 466

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 115/467 (24%), Positives = 202/467 (43%), Gaps = 15/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  +L  A  G  I        + I IDSR +     F  I G + D H F+   
Sbjct: 8   MNE-TTVKELAAATGGELISGNENEVFSNIVIDSRQVDKDSLFVPIVGENNDAHKFLEAV 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              G  + + +   +      +I    VDD   AL  L    R +    ++ +TGSVGKT
Sbjct: 67  YNSGCKVAISSKKDIFLKKDFNI--VLVDDTTKALQSLGKYIRKKLNLPLVGVTGSVGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT+EM+ +ALS + K +    ++N+ +GVP+TL+R+  D + G+ ELGMS   E+  +  
Sbjct: 125 TTREMVALALSDL-KVFKTPNNFNSQVGVPITLSRI-KDEEIGVIELGMSKFDEMEKIAK 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V    A++T I  AH+ N    E I + K  I +G+++   +FLN D+     L   S 
Sbjct: 183 IVNCDCALVTNIGTAHIENLFTRENIRTEKFHIMDGMKENSVVFLNADND----LLNNSP 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                    F    N D +          +    +                  ++ +   
Sbjct: 239 KREGIIYKFFSAKGNKDCEYYASDIVFNNA--MPEFNAHIEGKTLRVHLNVFGEHQISNA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +    + +I++ +            +  + +G  T+ID++YNA+P SM    + +
Sbjct: 297 LAALAVADHYNLSIESAAKHLEDFRGFSHRQELIIRGGLTVIDDTYNASPDSM---KASI 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALP 419
           S +      R+IA+L DM E+GE  ++ H ++ + ++    +  V+  G     +   + 
Sbjct: 354 SILKGFNAKRKIAILADMKELGEDEKNLHREIGDFINKNVKVDAVFTVGELAKEIISNIN 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++     E  + L  FI+  L DGDV ++K SNS   + ++  +  
Sbjct: 414 ENVLTKSFEDNETLENFIREYLKDGDVCLLKGSNSMKLFDVVEKIKN 460


>gi|251782868|ref|YP_002997171.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242391498|dbj|BAH81957.1| putative D-Ala-D-Ala adding enzyme [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 455

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 211/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    +N I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLNQIEFDSRKITEGDLFLPLKGER-DGHDFIDLAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A   LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVNDCLKAFQTLAQYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M++  LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + R
Sbjct: 116 DMISAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHMGDIHLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  +          E+  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGDYQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
           + +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L         
Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 403 EGHVQFFQKNQQEDQFEDMGRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|89902198|ref|YP_524669.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodoferax
           ferrireducens T118]
 gi|89346935|gb|ABD71138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodoferax ferrireducens T118]
          Length = 480

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 19/476 (3%)

Query: 4   LWTFHDLLQAIQ-GHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           + T       +     +           +  +  D+R++AP + F A++G H+D HDF+ 
Sbjct: 1   MMTLQQAASWLGNARLVNVTGTDGADVLIERVHTDTRTLAPGDLFVALRGEHFDAHDFLA 60

Query: 59  HAVQKGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            A  +GA   V       D+ A + ++ +P   V D   AL +LA   R +    +IA+T
Sbjct: 61  QAKAQGAVAAVCQASDAGDVEAKLRAVGLPGLLVPDTKLALAQLATQWRAQFTLPLIAVT 120

Query: 115 GSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M+   L + K        G+ NN IGVPLT+ R+    +  + ELGM+H 
Sbjct: 121 GSNGKTTVTQMIAAILRAYKPQAYLSTQGNLNNDIGVPLTVLRLRRQHEIAVVELGMNHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P +A++      HL   + +E +A     + + L   G      DD++ 
Sbjct: 181 GEIATLAAIAQPTVALVNNAQREHLEFMATVERVAQENGSVIDALPAHGVAVFPADDTYS 240

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYH 291
            L   K+ +  +    S      A          S  +W   V     +++      G H
Sbjct: 241 PLWADKAGSRVVMRFGSAADGAGAAQVRCLQADWSGVAWQVAVSTPAGALQYTLPIAGLH 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  +         +    + LS F P +GR +     +     TL+D+SYNANP 
Sbjct: 301 NVKNSLAAVACTLAAGVPLKHIARGLSAFEPVKGRSRALLIQIGARQITLVDDSYNANPD 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S++AAI VL+ +     G R+ VLGDM E+G+    FH +  +      +  ++  G   
Sbjct: 361 SVRAAIDVLASLP----GPRLLVLGDMGEVGDQGPQFHAEAGQHARALGVESLFTLGELS 416

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            A   +        +      L   + + L     V+VK S      R++  +L +
Sbjct: 417 AAAATSFGAG---RHFADNQSLQAAVLAELPRIGSVLVKGSRFMKMERVVEAVLHQ 469


>gi|257438099|ref|ZP_05613854.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199430|gb|EEU97714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 454

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 117/445 (26%), Positives = 198/445 (44%), Gaps = 13/445 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V  ++ DSR + P   F A  G  +DGHDF   A++ GA  VV+N  +       S+
Sbjct: 22  ETPVTLVTTDSREVCPGCIFVAFPGEKFDGHDFAAKALENGALCVVLNHPVEGVPEEKSV 81

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 D   A+  L    R +    ++ +TGSVGKTTTK+M   A++    T    G+ 
Sbjct: 82  ---ICPDSYHAMMVLGANYRSQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGSTIKTEGNQ 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P T+ R+  +  + + E+GMSH GEI  L+   RP + +IT I  +H+ N    
Sbjct: 139 NNELGLPRTMFRIGKETQYAVVEMGMSHAGEIERLSKCARPDVGIITCIGMSHIGNLGSQ 198

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  AK EI  GL +   + LN DD F    KA          +S G        L   
Sbjct: 199 ENICKAKLEICAGLPEGAPLVLNGDDPFLR--KAVLPDHVRPVWFSLGDENADVCALSIQ 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     S++    +  +  V    +G H   N L      + L  +    I  L+ F   
Sbjct: 257 QDEKGMSFVLEDHEEGTFLVKIPAMGRHNVANALAAYCAATRLGLNARRVIAGLADFE-- 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             +    +  ++     +I++ YNANP SM    + L+    +   RR A+LGDM E+G+
Sbjct: 315 --QTGMRQKVVHARGVDVIEDCYNANPDSM---KAALAMFREYPCKRRFALLGDMLELGD 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442
           +S++ H ++        + ++   G     +   A  + +   +++T       +   + 
Sbjct: 370 ISRAAHEEVGRQAVENKVDYLVTYGEQAKRIAVVAAAKGLPTLHADTYAQAAETLLDKMQ 429

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
            GD ++VK+S      +++ +  +E
Sbjct: 430 PGDALLVKASRGMALEKVLEIFYKE 454


>gi|229133031|ref|ZP_04261872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
 gi|228650449|gb|EEL06443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BDRD-ST196]
          Length = 460

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 121/461 (26%), Positives = 216/461 (46%), Gaps = 20/461 (4%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQKG 64
              L + + G  +        + G+ IDS+ I     F  I      DGHD++  A+  G
Sbjct: 12  LKKLEEVVDGEGLQESFHHLEMQGVCIDSKKIKEGNLFVPII--RVKDGHDYVKEAIDNG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +             IP+  VDD L AL +LA   R      +I ITGS GKTT K+
Sbjct: 70  AVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRKGLDVKVIGITGSNGKTTVKD 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +++  LS+  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G+IR L+ + +P
Sbjct: 128 IISTILSTTHRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGQIRNLSQIAQP 187

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  +HL      EEI+ AK EI +GL++ G +  N D    E L ++ + + +
Sbjct: 188 DVAIITMIGQSHLETLGSREEISKAKLEIIDGLKEEGLLLYNGD----ETLLSRKNNVLV 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               SFG+    D      +        ++       +V  HG    +   + + +G   
Sbjct: 244 LECKSFGEKDTNDLFPTNVQLDEYGVHFKLNDSKIQYDVPLHGKHNILNTIVGIAVGQFY 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  +                   R++    +  FT+I++++NA+P+SMKAAI  L +++
Sbjct: 304 NVPTEKIQDA-----LRQINITHMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLN 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
            + +   I V+GDM E+G+ ++++H ++ ++L+  NIS+V+  G     + +   +   +
Sbjct: 359 AYKKK--IIVIGDMLELGKAAETYHREIGKMLNQENISYVFTYGEMAEIVAEEAMKTYAT 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             V        +   +   +   DVV++K S       ++ 
Sbjct: 417 GQVQSYNNKAKIAEEVLKIITKKDVVLLKGSRGMALEEIVQ 457


>gi|312904405|ref|ZP_07763565.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|310632232|gb|EFQ15515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0635]
 gi|315577244|gb|EFU89435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecalis TX0630]
          Length = 474

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 151/469 (32%), Positives = 228/469 (48%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++ QA++  +         + GI  DSR I     F  ++G + DGH FI  A+  
Sbjct: 20  LTFWEVAQAVEASNDWQQWSDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIESAMAN 78

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G        D+V +     +PV  V D L A+ KLA     + +  +IA+TGS GKTTTK
Sbjct: 79  GCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQKLATYYLNKMQPNVIAVTGSNGKTTTK 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    TY   G+YNN IG+P T+  MP + +  I E+GM H  EI FL++L +
Sbjct: 137 DLIAAVLSEKFVTYKTQGNYNNQIGLPYTILHMPDETEKLILEMGMDHAQEISFLSNLAQ 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N      IA AK EI +GL K G++F+  D+   E L  K     
Sbjct: 197 PEVAAITMIGEAHVENLGSRAGIAQAKMEIVDGLAKDGSLFVPSDEPLLEPLVEKV---- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + +FG S+ +  Q     +  EQ+  ++      M       G +   N L+ +GI 
Sbjct: 253 TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS--DTQMTFTIPVPGTYNVTNALIAIGIG 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      K L+     + R +  + A       ++ + YNANP +M   +   S++
Sbjct: 311 RYFQLTDSEIQKGLATAELTKNRTEWLKAANGAE---ILSDVYNANPTAMGLVLDSFSKM 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
           S    G+RIAVLGDM E+G  S + H  +A+ L+   I  V+L G  +  L D L     
Sbjct: 368 SKV--GKRIAVLGDMLELGPDSAAMHQAMAQHLAPDAIEEVFLYGSEMAYLADKLQETYA 425

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           P +IH    E  + L   ++  L   D+VV+K SN  G   +I+ LLE+
Sbjct: 426 PANIHSFKKEEKNELIEAVKKVLQPEDMVVLKGSNGMGLREVIDALLEK 474


>gi|293556890|ref|ZP_06675451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
 gi|293567808|ref|ZP_06679149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|294615129|ref|ZP_06695015.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|294617802|ref|ZP_06697415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291589393|gb|EFF21200.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1071]
 gi|291592071|gb|EFF23694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1636]
 gi|291595942|gb|EFF27222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1679]
 gi|291600974|gb|EFF31265.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1039]
          Length = 470

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 21  MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 75  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 249 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 301 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 361 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 419 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468


>gi|260558406|ref|ZP_05830602.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|261207112|ref|ZP_05921801.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289567231|ref|ZP_06447616.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
 gi|260075580|gb|EEW63886.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           C68]
 gi|260078740|gb|EEW66442.1| murC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium TC
           6]
 gi|289160979|gb|EFD08894.1| D-Ala-D-Ala adding enzyme [Enterococcus faecium D344SRF]
          Length = 450

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAVKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|56696076|ref|YP_166430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677813|gb|AAV94479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 464

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 169/443 (38%), Positives = 238/443 (53%), Gaps = 10/443 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+R+IAP + F A+     DGHDF+  A+ KGAG  +V+   +        
Sbjct: 20  DWQVSGISIDTRTIAPGDLFVALTAAR-DGHDFVAQALDKGAGAALVSR--IPEGVGEDG 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  VDDV   L  L  A R R++A ++A+TGSVGKT+TKEML   L +  +T+A + SY
Sbjct: 77  RLLLVDDVQTGLEALGRAGRARAQARVVAVTGSVGKTSTKEMLAAMLGAQGRTHASVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLARQARPHVAMVTTVAAVHLEAFDDV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA  KA I EGLE  G   LN D +  ++L+A   A       SFG++   D++L   
Sbjct: 197 AGIAREKAAIMEGLEPGGVAVLNADIAEADILRA---AARGARQLSFGRAAQ-DYRLTGV 252

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     +          +       G H A N L  L     L AD   +++ L  + P 
Sbjct: 253 EVADGMTHARADTPAGPVSFTLQSAGTHFAMNALGALACCDALGADAGQSLQGLERWTPY 312

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG R   +L  G  TL D+SYNANP S+ AA+ V   ++     RR+A LGDM E+G 
Sbjct: 313 KGRGARETISLAGGPVTLFDDSYNANPTSVGAALEV---LAGTPGTRRVAFLGDMKELGP 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                H  LA + ++  +  V   G  + AL DALP +    ++ET   +   + + +  
Sbjct: 370 EELPLHAGLAALPAMERVDQVHCIGPLMRALFDALPEAKRGRWTETGAEMLAELPALVAP 429

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD V+VK S S G  RL++ L E
Sbjct: 430 GDAVLVKGSLSMGLARLVDGLRE 452


>gi|227544702|ref|ZP_03974751.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300909056|ref|ZP_07126519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
 gi|154705580|gb|ABS84216.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus reuteri]
 gi|227185303|gb|EEI65374.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894463|gb|EFK87821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri SD2112]
          Length = 459

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 210/470 (44%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+     L  +     
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           +       +    E     +G +   N L  + + 
Sbjct: 236 AQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E    R      +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
                GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 PV--AGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               I+ + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIYHYAASDLQQLIADLTTTLTGDDIVLLKASHGIHLEEVLTALKAE 459


>gi|194335055|ref|YP_002016915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
 gi|194312873|gb|ACF47268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Prosthecochloris aestuarii DSM 271]
          Length = 468

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 111/442 (25%), Positives = 180/442 (40%), Gaps = 11/442 (2%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASIGSLSIP 84
            +SIDSR I     FFA+KG   DGH+++  A + GA   VVN +       S+      
Sbjct: 31  SVSIDSRDIRSGSIFFALKGERTDGHEYVSLAFKSGARCAVVNREWYSRHAESVHQEGWR 90

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V D + AL +LA   R +    +I I GS GKTTTKEM    L +  K +   G+ N
Sbjct: 91  YLVVHDTVRALQQLASIYRSKFSIPVIGIGGSNGKTTTKEMTAAVLGTTYKVHMSKGNLN 150

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH+GVPLTL  +    D  + E+G++H GE+  LT + RP  A++T I   HL     ++
Sbjct: 151 NHLGVPLTLFGLRDTHDLAVVEMGINHPGEMELLTSIARPDFALLTNIGHEHLEFLGDLD 210

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A A+  ++      G            L  A+     I+    +G  ++ +    +  
Sbjct: 211 GVAEAETVLYHDTIMRGGTVFVNTGDARLLAAARE----IQNRVDYGPERDGNLIWPEKI 266

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                      L   S  V                         +V     A  +     
Sbjct: 267 VLDPAGRTTFTLCTASGSVSLMLHFSGRHNVDNAVAAAAVGSCFNVPLNAIAEGLGSLVP 326

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G +    +  G   + +++YNANP S+  A+  + +I     GRR+ V  DM E+GE+
Sbjct: 327 ADGWKRLEFIEAGGIRIFNDTYNANPDSVTMALKTVCEIP--CSGRRVLVFADMLELGEV 384

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S + H  +  +++      V+  G H      +       HY  +   L   +++ L   
Sbjct: 385 SDAEHRRMGALVAQLPFDAVYTYGEHAALSCLSAGPKCRGHY-TSHAHLLDALKAYLSQD 443

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D++++K S       +   L  
Sbjct: 444 DLLLLKGSRGMRLELIAEGLRA 465


>gi|159038982|ref|YP_001538235.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
 gi|157917817|gb|ABV99244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           arenicola CNS-205]
          Length = 474

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 194/472 (41%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL    ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-RLAEVAAAVGGRLVAADPTAAVTGSVEFDSRKVGPGGLFVAFPGEQVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A++ GA  V+    + A      +P+  VDD   AL +LA A   R    T+I +TGS G
Sbjct: 60  AIRAGAVAVLGTRPVPA------VPMVLVDDAQAALGRLARAVVDRLPGLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    S +  T A  GS+NN +G P T  +   D  + + E G   +G IR+L
Sbjct: 114 KTSTKDLIAALTSRLGPTVAPPGSFNNELGHPYTALQAGPDTRYLVLEKGARGVGHIRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CDVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPADGLAVLNADDGLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++  AD +               +        V     G H   N L
Sbjct: 234 TQA----RVIRYGEAAEADIRAVDVVLDERGRPSFTLVTPEGEAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +      L        R             T+ID+SYNANPASM+ A+
Sbjct: 290 AAAAVARELGMPLTELAIVLGEMGLVSTRRMD--VFERIDSVTVIDDSYNANPASMEVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ I      R +AVLG M E+G      H+++  + +   +  + + G     + + 
Sbjct: 348 RALASIGQR--RRTVAVLGYMAELGSYEHDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                                  ++  L  GDVV+VK S     + + + L 
Sbjct: 406 ATSVRDWGGESVQLTDQADAVEVLRGDLRPGDVVLVKGSR-YRTWEVADALR 456


>gi|326402231|ref|YP_004282312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
 gi|325049092|dbj|BAJ79430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidiphilium multivorum AIU301]
          Length = 451

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 173/467 (37%), Positives = 243/467 (52%), Gaps = 17/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  DL  A  G  +         G+SIDSR+ AP E F A+     DGHDF+  A
Sbjct: 1   MSGLWSARDLAVATNGTWLRGEADA--TGVSIDSRTTAPGELFVALADAR-DGHDFVPDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+V  D+ A       P   V+DV  AL +L    R RS+A ++A+TGSVGK+
Sbjct: 58  EAKGAACVLVARDVGAG------PALLVEDVQAALTRLGEFGRARSRARVVAVTGSVGKS 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS+   T+A   S+NNHIGVPLTLAR+P + DF + E+GM+H GEI  L+ 
Sbjct: 112 TTKEMLRRILSAFGATHAAEASFNNHIGVPLTLARLPAEADFAVVEIGMNHPGEIAPLSA 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+ VIT I  AHL     +E IA  KAE+  G+   G   L     F   L  +  
Sbjct: 172 ITRPHVGVITAIGSAHLGLMGSVEAIADEKAELLRGVVPGGAAVLP-RGPFLSRLARR-- 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + SFG    A+ +L + +  ++   +   +    +       G HMA N +  L
Sbjct: 229 ARDGVRVVSFGAQDLAEARLIEAESDADGVAVTANILRMVVRCRLAAPGTHMAMNAVAAL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L  D   A  AL  F P  GRG R R  ++    TL+DESYNA+  S++AA+ VL
Sbjct: 289 AAAAALGLDPVQAAAALDGFAPLAGRGARRRVNVDGVEITLLDESYNASGNSVRAALEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     GRRIAVLGDM E+G+ +   H DLA+         V+  G H+  + D LP 
Sbjct: 349 SLLP----GRRIAVLGDMLELGDYADDEHRDLAD-AVSGVADLVFACGPHMRVMFDELPE 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++     L   ++++L  GDVV+VK S       ++  + ++
Sbjct: 404 RQRGAWAVDAASLAPAVRAALAVGDVVLVKGSYGSRMRDVVAAIEDK 450


>gi|218247170|ref|YP_002372541.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
 gi|218167648|gb|ACK66385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 8801]
          Length = 457

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 133/449 (29%), Positives = 204/449 (45%), Gaps = 23/449 (5%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I ++    ++GI+ DSR I P E F A++G  +DGHDF   AV KGA  ++V+  +    
Sbjct: 22  IDVIDDFLIDGITTDSRYINPGEIFLALRGNTFDGHDFANIAVDKGAIALIVDHHISVKS 81

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  IP   V D L A  ++A   R +    +IAITGSVGKTTTKE+++  LS+    + 
Sbjct: 82  -TKQIPQIQVKDTLLAYQQVAHWWREQLTIPVIAITGSVGKTTTKELISAVLSNYGIVHK 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IGVP TL  +    D+ + E+GM  L EI  L+ + RP I +IT +  AH+ 
Sbjct: 141 TKENYNNEIGVPKTLLELTRQHDYAVIEMGMRGLNEIALLSQIARPTIGLITNVGTAHIG 200

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                E IA AK E+   +    T   N+D+S       K       +    G       
Sbjct: 201 RLGSKEAIAQAKCELLAEMPPDATAIFNHDNSLLVQTAKKVWKGETISYGLEGGD----- 255

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                   + +      L+ + M+      G H A N L  + +   L  D +  ++ +S
Sbjct: 256 -------ITGELLDNQTLRVEGMDFPLPLPGRHNALNYLGAIAVAKCLKLDCNVLMQGIS 308

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R R     G   L+DE+YNA   SMKAA+ +L +I        +A+LG M
Sbjct: 309 ----VNLPKGRSRRYQLSGDILLLDETYNAGLESMKAALELLKEIPGQR---HLAILGTM 361

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLF 436
            E+GE S   H ++ E      I H+ +       +A+ D     +      T + L   
Sbjct: 362 KELGEKSAELHREVGETAKALGIDHLLVLVDDPEAIAIADGAL-GMVTECLPTQEELIKR 420

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +  GD ++ K+SNS G  R++    
Sbjct: 421 LTEIVQPGDRLLFKASNSVGLNRVVEAFR 449


>gi|148543480|ref|YP_001270850.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184152889|ref|YP_001841230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227363630|ref|ZP_03847745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|325681825|ref|ZP_08161344.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
 gi|148530514|gb|ABQ82513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri DSM 20016]
 gi|183224233|dbj|BAG24750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino
           pimelate--D-alanyl-D-alanine ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227071341|gb|EEI09649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM2-3]
 gi|324978916|gb|EGC15864.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 459

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 210/470 (44%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G   DGH ++  A   
Sbjct: 3   MKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQ-DGHQYVPSAFTN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    I   + P+  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAVASLWASDH--EITDQTHPLLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 120 DMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVVVEMGMDRFGQLDFLSKLVN 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   ++IA AK EI  GL++ GT+  N D+     L  +     
Sbjct: 180 PDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEP----LLEERVKDL 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+  + +           +       +    E     +G +   N L  + + 
Sbjct: 236 AQRQMRFGRQLSNNLYATSVHDEP-RQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL        +AL+     E    R      +    ++ + YN+NP + K  +  +++ 
Sbjct: 295 KILHITPAHMKQALAN---VELTENRAEWVKGKNGEQILSDVYNSNPTAAKEVLKTIAET 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
                GRRIAVLGDM E+G+ +   H  LAE +    I+ V+L G  +  LKD L     
Sbjct: 352 PV--AGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNLKDKLIQEGY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               IH + +  +  L   + ++L   D+V++K+S+      ++  L  E
Sbjct: 410 PAEDIHHYAASDLQQLIADLTATLTGEDIVLLKASHGIHLEEVLTALKAE 459


>gi|312863363|ref|ZP_07723601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
 gi|311100899|gb|EFQ59104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis F0396]
          Length = 457

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 205/473 (43%), Gaps = 29/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITEGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  KLA     ++   +IA+TGS GKTTTK
Sbjct: 62  GALATFTEKELPA-----DQAHILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +    + 
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLDVVR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          +L   +    +  +         +V     G + A N ++   + 
Sbjct: 237 ----------FGDGAELTVSELTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 287 KHLGVTEENILTALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +   
Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQMFP 403

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 404 LGHVYYFKKIADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456


>gi|120555367|ref|YP_959718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Marinobacter aquaeolei VT8]
 gi|120325216|gb|ABM19531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Marinobacter aquaeolei VT8]
          Length = 465

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 139/471 (29%), Positives = 216/471 (45%), Gaps = 18/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M   ++  +  + +Q    G      + + +G+S D+RS+   + F A++G  +DGH+F+
Sbjct: 1   MMRAFSLAEAREWLQATLAGARTDAGELWFDGVSTDTRSVGDGQLFVALRGERFDGHEFL 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+++GA   VV+T++      ++IP   V D + AL  LA   R  S A ++AITGS 
Sbjct: 61  GQALKQGAVAAVVDTEIT----DVAIPQLVVSDTVQALADLASGNRSESAARLVAITGSS 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT +EM    L+ +  T    G+ NNHIGVPLTL R+  D  FG  ELG S LGEI  
Sbjct: 117 GKTTVREMTGAILAGMGPTLVTEGNLNNHIGVPLTLFRLTPDHQFGAIELGASGLGEIAH 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              + RP +A++T    AHL  F   + I  AK EI +G+   G + LN DD  F+   A
Sbjct: 177 TVSITRPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVPADGAVVLNRDDPAFDQWHA 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++    +  +   G                   ++ +        +V    G H   N L
Sbjct: 237 RAGQRRVLGVSRMGHPAADYHAEAIMATDQGFEFLVLGPDSWRCHLVLGLPGEHNITNAL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L     L A        L      +GR +  + A +    TLID+SYNANPASMKAA+
Sbjct: 297 LALAACRELGATDQQVQSGLMQVEAVKGRLQVLKPASD---LTLIDDSYNANPASMKAAL 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+         R+AVLG M E+G+ ++  H  + E      I+ + +           
Sbjct: 354 DVLASYPA----PRLAVLGAMAELGDEAEELHRQVGEHARARGINKLMVV--GAGGNGYG 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLEE 467
                   +  + +     I +   +G   V+VK S S    R+   + ++
Sbjct: 408 TGFGDETEFFPSHEQAVNAIVAD-RNGAMTVLVKGSRSSAMDRVAEGIQKK 457


>gi|295104212|emb|CBL01756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii SL3/3]
          Length = 460

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 203/447 (45%), Gaps = 13/447 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ DSR + P   F A  G  +DGHDF   A+++GA  VVVN  +       + 
Sbjct: 22  DPEVALVTTDSREVKPGCIFVAFPGERFDGHDFAARALEQGAEYVVVNHPVPGVPEEKA- 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                 D   A+  +    R +    ++ +TGSVGKTTTK+M   ALS   +T    G+ 
Sbjct: 81  --ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALSGFGETIKTEGNQ 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P TL R+    ++ + E+GMSH GEI  L    RP + +IT I  +H+ N    
Sbjct: 139 NNELGMPRTLMRLESSTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGSQ 198

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I  AK EI  GL +   + LNYDD F    KA   A      +S          L   
Sbjct: 199 ENICKAKLEICNGLPEGAPLVLNYDDPFLR--KAALPAHVRPVWFSLSDENADVCALSIR 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++    S++    +  +  V    +G H   N L      + L  D    I+ LS F   
Sbjct: 257 QETDGMSFVLEDQEHGTFVVNIPAMGRHNVANALAAYCAATRLGCDAKRVIRGLSNFE-- 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             +  R +  ++    T+I++ YNANP SM    + L+        RR A+LGDM E+GE
Sbjct: 315 --QTGRRQKVVDSEGVTVIEDCYNANPDSM---KAALAMFKDFPCKRRFALLGDMLELGE 369

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLV 442
           LS+  H +L  + +   +  +   G         A  + +   ++++       + S + 
Sbjct: 370 LSREAHEELGRLAAESGLYCLITYGEQAKRTAVVAAAKGVETLHADSYREAADALLSRVQ 429

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEFP 469
            GD ++VK+S+     +++++  EE  
Sbjct: 430 PGDAILVKASHGMALEKVLDIFYEEHK 456


>gi|323497891|ref|ZP_08102900.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
 gi|323316936|gb|EGA69938.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           sinaloensis DSM 21326]
          Length = 452

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 210/471 (44%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L + + G  IG      +  +S D+R+I P   F A+ G  +D HDF  +A
Sbjct: 1   MINMM-LSQLAEYLDGQLIGQ--DVAIEQVSTDTRTIEPGSLFVALVGERFDAHDFASNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+  +       S P   VDD   AL K+        +   +AITGS GKT
Sbjct: 58  VEAGASALLVSKAL-----DCSTPQLLVDDTKLALGKIGQFVHQLCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   + +  +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL+      +N D    E    +  
Sbjct: 173 LVQPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLKPGSVAIVNLDSHGGEYW-QQVL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      +S        F        + ++  E+  +  +  V    IG H   N L   
Sbjct: 232 ADKRVVHFSVSDDSADFFARNITMSTAGEASFELVSRQGTFSVELGIIGQHNVANALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A ++     L      +GR             TLID+SYNA+  +M       
Sbjct: 292 ALAFELGATIEMVQSGLKHLAKVKGR---VESVSLTDKITLIDDSYNASVPAM----KAA 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+ +    
Sbjct: 345 ADLLSSFGGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTFGADAKAISE---- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEF 468
                + +T + +  FI+  L +      ++VK +NS G  ++   L E +
Sbjct: 401 QCQGKHFDTHESMIEFIKQQLANHNGAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|294142808|ref|YP_003558786.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
 gi|11761331|dbj|BAB19198.1| MurF [Shewanella violacea]
 gi|293329277|dbj|BAJ04008.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Shewanella
           violacea DSS12]
          Length = 455

 Score =  250 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 147/466 (31%), Positives = 223/466 (47%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL     + Q +    +G         +S DSR+I  Q  F A+KG  +DGH+F   A
Sbjct: 1   MIPL-NLSGICQRLNARLVG--ADVEFCHVSSDSRAIPEQTLFVALKGDKFDGHNFANTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+ ++      L+I    V D   A+ +L    +   +   +A+TGS GKT
Sbjct: 58  VENGAIALLVDHEL-----PLNITQVIVKDTQRAMGELGAYLKELIQPRSVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS   K     G++NN IGVPLTL R+  D +FG+FELG +H GEI + + 
Sbjct: 113 SVKEMVATILSQRHKVLYTAGNFNNEIGVPLTLLRLEADDEFGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  +E +ASAK+EIF  L  TGT  +N DD F  ++ A   
Sbjct: 173 LVKPDVALVNNVASAHLEGFGSLEGVASAKSEIFNHLTPTGTAIINADDGFASVMLA--- 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A    T  +FG    AD Q    +         ++    +++ +     G H   N L  
Sbjct: 230 ASTDYTQLTFGIDSAADIQASDLEADPMGCYRFKLSYLRETLLIALPLPGRHQVSNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I       +D      S+  P +GR    +     G   +ID+SYNANPAS+ AA+  
Sbjct: 290 TAICLSFGLTLDEIKLGFSLLVPVKGRMLPTQ----LGRVRVIDDSYNANPASVTAAVDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +I    EG R  VLGD+ E+G+ +   H +L E+     +  +   G        A  
Sbjct: 346 LHEI----EGHRCLVLGDLGELGDNAPLLHTELGELARQKGLDSLLTLGELSANASSAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              ++     ++ L   I+  L     V+VK S S    R++  L+
Sbjct: 402 VDGYISLELLLEDLIKNIKQ-LQGNVTVLVKGSRSARMERVVEALI 446


>gi|257885749|ref|ZP_05665402.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
 gi|257821605|gb|EEV48735.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,501]
          Length = 450

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 207/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S S H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNL--LTKGRRIAVLADMLELGKDSLSMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|257878841|ref|ZP_05658494.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
 gi|257813069|gb|EEV41827.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,230,933]
          Length = 450

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIDAIKQNLAATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|225630979|ref|YP_002727770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
 gi|225592960|gb|ACN95979.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           sp. wRi]
          Length = 509

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 148/514 (28%), Positives = 243/514 (47%), Gaps = 58/514 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+          S P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+ +GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHASEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKVGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + ++  
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSHANRN 238

Query: 243 ----------------------------------------------GIKTIYSFGKSKNA 256
                                                                + K    
Sbjct: 239 VISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYLDPGSSIANEHIRRLYNKDWIP 298

Query: 257 DFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             +  +   +  +  S        + +       G H A ++L    +V  L  D+    
Sbjct: 299 ASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFAYSLLAVAAVVQSLGLDLSKLP 358

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S   +   +A+
Sbjct: 359 LALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VAL 415

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   +    + L 
Sbjct: 416 LGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLK 475

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + + + + D ++VK S       ++   + ++
Sbjct: 476 SDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 509


>gi|254852348|ref|ZP_05241696.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
 gi|258605654|gb|EEW18262.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase [Listeria
           monocytogenes FSL R2-503]
          Length = 447

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 122/445 (27%), Positives = 202/445 (45%), Gaps = 15/445 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  D+R I   + F    G   DGH+F+  A + GA       D+      +  
Sbjct: 13  DVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVSQAREMGAVATFWQKDV--PNPPMDF 70

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K +   G++
Sbjct: 71  PVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNF 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      
Sbjct: 131 NNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSR 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EEIA AK EI  G                E L    +  G     +FGKS+ A+    + 
Sbjct: 191 EEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEI 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +E +      +   +E+    IG H   N +  +     +  + +    AL      
Sbjct: 246 RAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME-- 302

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R      +    +++++YN++P ++K  +     +   G+  +  VL DM E+G+
Sbjct: 303 -RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRSIHVHYSETMDGLFLFIQSS 440
           LS   H + AEVL    I  ++L G  + A   + +A      VH+  T + L   + S 
Sbjct: 361 LSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSE 420

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + ++VK S   G   ++  L+
Sbjct: 421 MNGNEWILVKGSYGMGLKDVVENLI 445


>gi|21910619|ref|NP_664887.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28895693|ref|NP_802043.1| D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
 gi|21904821|gb|AAM79690.1| putative D-Ala-D-Ala adding enzyme [Streptococcus pyogenes MGAS315]
 gi|28810942|dbj|BAC63876.1| putative D-ala-D-ala adding enzyme [Streptococcus pyogenes SSI-1]
          Length = 455

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 212/472 (44%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +  +    ++ I  DSR I   + F  +KG   +GH+FI  A Q 
Sbjct: 3   LTLHEVAKIVDAQNNVSDLDDVPLHHIEFDSRKITKGDLFLPLKGQR-NGHEFIDLAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++         P   V+D L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSEKELPGK------PHLLVEDCLKAFQKLAHYYIDKMRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + R
Sbjct: 116 DMIGAVLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +  AHL  F   ++IA  K +I +G++  G +    D      L        
Sbjct: 176 PRIAVLTLVGEAHLEYFGSRDKIAQGKMQIVDGMDSNGILIAPGDSIIDPYLPENQM--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG  +  +          E+  +       +  V     G + A N ++   + 
Sbjct: 233 ---VIRFGDHQELNVT----DIREEKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           ++ + YNANP +M+  +   + I
Sbjct: 286 KLLAVADEDIIEAL---ESVQLTANRTEWKKAANGADILSDVYNANPTAMRLILETFANI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
           + +  G++IAVL DM E+G  S + H  L + LS   I  +   G  +  L         
Sbjct: 343 AKNPGGKKIAVLADMKELGPDSVALHSQLIKQLSPDRIDQLVFYGDDIQELAQLAHEFYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV +       +  + +   +Q  L   D +++K SNS G  +L+N L+E
Sbjct: 403 EGHVQFFQKNQQEDQFEDMVRQVQQLLAPSDQILLKGSNSMGLAKLVNHLVE 454


>gi|254995102|ref|ZP_05277292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase (murF)
           [Anaplasma marginale str. Mississippi]
          Length = 456

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 149/455 (32%), Positives = 230/455 (50%), Gaps = 7/455 (1%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A++G  +G      +  ISID+R++ P + F AIKG ++DGH F+  A  KGA   VV+
Sbjct: 3   AAVRGLCLGKDW-TSLGRISIDTRTLRPGDIFVAIKGKNFDGHCFVPEAFSKGAVAAVVD 61

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V +      P+  V D L AL+ +A      ++A +IAITGS GKTTTK +L+ ALS
Sbjct: 62  EVSVPTADCG--PLVAVKDTLRALHDIATMRLRDTRAKVIAITGSAGKTTTKYVLSGALS 119

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
              K Y    +YNN IG+PL  A +  D +F + E+GM+  GE+  L+ + RP +AVIT 
Sbjct: 120 KYGKVYYNEANYNNLIGMPLYAANLTEDAEFVVLEMGMNSPGEVDALSRIARPDVAVITN 179

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           + PAHL  F  +E + +AK E+F  ++      LN+D  ++  ++A + +     I SFG
Sbjct: 180 VGPAHLEFFESVEGVLAAKLEVFNHVKDGAIAVLNFDSEYYAKMRAVAESYCA-RIISFG 238

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               AD Q+ + ++ S         +     +         +  +     +    + D+ 
Sbjct: 239 VGAGADVQIFRREEPSNPVTFRCFGEELQYNLKSGARHLAYSVAITAA--VGRAFSIDLT 296

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            A  A+  F P EG          +    L+D++YNANP SM AAI  LS ++     RR
Sbjct: 297 QARGAMEEFVPLEGSKVHVTTFKGREI-VLLDDAYNANPLSMVAAIENLSNLNHARVLRR 355

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           +A+LGDM E+G  S  +H  L E +   NI  V+  G H+LAL D LP+ +   +     
Sbjct: 356 VAILGDMLELGSGSCHYHRGLLERIMHSNIDVVYTVGSHMLALYDVLPQHLRGGHFADHG 415

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++  +  GD V+VK S +     ++  LLE
Sbjct: 416 EALAHLERIIKPGDGVLVKGSFATKLSLVVKHLLE 450


>gi|257887887|ref|ZP_05667540.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
 gi|257823941|gb|EEV50873.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,141,733]
          Length = 450

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 206/470 (43%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+            +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSEC---SELTKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPSDEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQNLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|83312943|ref|YP_423207.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
 gi|82947784|dbj|BAE52648.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 470

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 192/467 (41%), Positives = 266/467 (56%), Gaps = 5/467 (1%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  PLWT  ++  A+ G   G        G+SIDSRSI P + F A++GP++DGHD +  
Sbjct: 1   MIRPLWTSAEVAAAVAGTPSGAA--WEAQGVSIDSRSIEPGDLFIALEGPNHDGHDHVAS 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +V+   +    +   P+  V D + AL  L +A+R RS A I+A+TGSVGK
Sbjct: 59  ALANGAAAALVHK--LPRGTAEDAPLVLVKDTMTALQDLGIASRARSTARIVAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKEML +ALS    T+  +GS+NNH GVPL+LARMP  V + IFE+GM+H GEI  L 
Sbjct: 117 TGTKEMLALALSDQGATHYSVGSFNNHWGVPLSLARMPTAVQYAIFEIGMNHPGEITPLV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  GT  L  D++ F  L   +
Sbjct: 177 RMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGVETGGTAVLPRDNAHFAYLNDAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+K I SFG    A  +L       + + +   +  + +       G   A N L  
Sbjct: 237 RTAGLKDIRSFGNHIEATARLLDCAVDPQSTAVFALVADQPLSYRVGVAGRQWAMNSLAV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L ADV+ A  AL+     +GRG+R R  +  G F LIDESYNA+P SMKAAI++
Sbjct: 297 LLAVEALGADVNLAAMALAAMAAPKGRGQRRRIEIEGGSFELIDESYNASPVSMKAAIAM 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ + P   GRRIAVLGDM E+G    S H  +AE +  +NI  V+ +G     L DAL 
Sbjct: 357 LASVRPAKGGRRIAVLGDMLELGPQGPSLHASVAETVESWNIDLVFTAGTLTAHLHDALA 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 ++   D +   +++ +  GDVV+VK S      R++N L E
Sbjct: 417 APRRGGHAADSDAVAALVKAGVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|261867476|ref|YP_003255398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412808|gb|ACX82179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 459

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 205/477 (42%), Gaps = 29/477 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +   +    +G      V  +S DSR    +  FFA+KG ++D H ++  A
Sbjct: 1   MITL-SLSQIAAILGAELMGDGT-VIVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++G    VV           +I    V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 59  AEQGCVAAVVEHPTEG-----NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKT 113

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM+      +           G++NN IGVPLTL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMVASILQQSAVDSDDVLFTQGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +  AHL  F  ++ +A+AK EIF GL + G   +N   ++ +  +
Sbjct: 174 YTTSLAQPDVALVNNVMAAHLEGFGSLDGVATAKGEIFRGLTENGVAIINLAHNYQQKWQ 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A          Y    +  ADF   +     + ++  +      +++    +G H   N 
Sbjct: 234 A--DIGRHAVQYFAYDNPRADFYAEQIHFSEQGAYFLLHTPQGRVQINSPYLGEHNISNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A      K L      +GR    +   N     L+D++YNAN  SMK+A
Sbjct: 292 LAATALAMNVGATTAQVKKGLETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKSA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ISVL +        R+ V+GDM E+G+ +Q  H ++ E      +  V   G     +  
Sbjct: 349 ISVLQKYPA----FRVFVVGDMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISA 404

Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                    +      L  ++     Q       VV+VK S S     +I+LL   F
Sbjct: 405 V----NSGRHFTDKTELVTYLTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 457


>gi|322516246|ref|ZP_08069178.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322125310|gb|EFX96675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 479

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 206/473 (43%), Gaps = 29/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 25  LTLHEIAKIVGSKNDVAAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFEN 83

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       D+ A           VDD L A  KLA     ++   +IA+TGS GKTTTK
Sbjct: 84  GALATFTEKDLPA-----DQAHILVDDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 138

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 139 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 198

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +    + 
Sbjct: 199 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFLPSNLEVVR 258

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          +L   +    +  +         +V     G + A N ++   + 
Sbjct: 259 ----------FGDGAELTVSELTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 309 KHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +   
Sbjct: 366 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQIFP 425

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 426 LGHVYYFKKTADEDQFDAMVKHIKESLGEHDQILLKGSNSMNLAKVVEELQAK 478


>gi|284048642|ref|YP_003398981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
 gi|283952863|gb|ADB47666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Acidaminococcus fermentans DSM
           20731]
          Length = 460

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 123/441 (27%), Positives = 198/441 (44%), Gaps = 14/441 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
               +  DSR+I P   F A+KG  +DGH F+  A++ GA   VV+              
Sbjct: 22  EFTDVVTDSRAIVPGCLFVALKGEKFDGHRFVAQALEDGARAAVVSEVPEGVAAD---RC 78

Query: 86  FGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             V D L A  ++A   R  +   T+IAITGS GKT+TK+ +   L    +      ++N
Sbjct: 79  VVVPDTLTAYQQIASRYRLDKKGLTVIAITGSNGKTSTKDCIAAVLGERYRVIKTQANFN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+P TL  +  D +  + E+GM  LG+IR + H+  P  AVIT +   HL     +E
Sbjct: 139 NEIGLPKTLLTIREDTEMAVVEMGMRGLGQIRAMKHIAYPDAAVITNVGDTHLELLGSLE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AK+EI E        FLN DD    ++           ++++G   +AD +  +  
Sbjct: 199 NIAKAKSEILEDFTPKNHAFLNGDDPRVSVM------ETGAAVHTYGIDSDADVKAVEIS 252

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               ++    + +                  M     +       V  A  A  + +   
Sbjct: 253 ADGLRTVFTYRSRITGATQKVQLPLIGRHNVMNALAAVAVGEVYGVPDAAIARGLENL-- 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGE 383
                 +  L+ G  T+I+++YNA+PASM+AA+  L   +   G+GR IAVL DM E+G 
Sbjct: 311 KMTGMRQEILHFGPVTVINDAYNASPASMEAALRTLGDVVKSQGKGRAIAVLADMLELGA 370

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            SQS H  +    S Y ++ +   G     + +A  +  + VHY++        +   + 
Sbjct: 371 HSQSGHAQVGTWCSQYGVTELVCYGPESRFMAEAAQKAGVPVHYAQDRGEAARVLARLVR 430

Query: 443 DGDVVVVKSSNSCGFYRLINL 463
             DVV++K S+    ++LI+ 
Sbjct: 431 PDDVVLLKGSHGMEVFKLIDE 451


>gi|301301074|ref|ZP_07207234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851344|gb|EFK79068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 456

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 218/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  GA 
Sbjct: 5   LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+M 
Sbjct: 64  ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +
Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+     L         + 
Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +I 
Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              VD   KAL+ F     R +            ++ + YN+NP ++K  +    Q+   
Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
            EG+RI VLGDM E+GE +   H +LA+ ++   I  V+L G  +  L + L        
Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHNNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQ 412

Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H+   + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 413 IHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456


>gi|257899461|ref|ZP_05679114.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
 gi|257837373|gb|EEV62447.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           Com15]
          Length = 450

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 207/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +         PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKDFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVPDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAEGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFELSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKDSLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEDLNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   ++ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYFEKEKNKLIEAVKQTLESTDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|269838019|ref|YP_003320247.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787282|gb|ACZ39425.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 463

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 208/471 (44%), Gaps = 19/471 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  ++L+  +G   G       V  +  DSR I P + F A+ G   DGHDF+  A  
Sbjct: 1   MLTLREVLEGSRGALRGAADLGTPVRRVWHDSREIEPGDLFVAVVGERLDGHDFLAEAFA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +V+   V  +     P+  V D +  L  LA   R      ++ ITGS+GK++T
Sbjct: 61  RGAVAALVDRAHVPRLPEGLGPLIVVPDTVAGLQDLAAFWRDSHDVAVVGITGSIGKSST 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTHL 181
           KE++    S   +      S+NN IG+PL+L  +  D +  + E+ G    GEI  L  +
Sbjct: 121 KEVVWSVASQRFRAIRSQRSFNNEIGLPLSLMEIGSDTEVVVLEIGGAYAPGEISRLAEI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I V+T ++ +HL+    +E IA+ KAE+   L + G   LN DD    L+  K   
Sbjct: 181 ARPTIGVVTNVSHSHLARMGSLEAIAATKAELPASLPEDGVAVLNGDDLRVRLMADKCR- 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                +  +G + + + +    +    +    ++ + G    V    +G H    +L  +
Sbjct: 240 ---CRVIRYGLAPDCEVRAENVESHGLDGISFDLLVDGGRHHVHVPLLGQHSVHTVLAGV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   V+  +  L     +             G  TLID++YNANP S  AA+++L
Sbjct: 297 SVGLALGMSVEETLPGLRDPSIQLRLL----VVPAIGGATLIDDTYNANPTSSLAALNLL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++       RIA  GDM E+G   +  H  + +  +   +  ++  G     + D    
Sbjct: 353 AELPARR---RIAAFGDMLELGSYEEEGHRIVGKRAAAV-VDRLFTMGPRARIIADEAVA 408

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      V   +T   L   ++ ++ +GDVV+VK S       ++  L + 
Sbjct: 409 SGLAPDAVVAVDTKQDLIDALKETMREGDVVLVKGSRGIQLEHVVAALRDR 459


>gi|116872269|ref|YP_849050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116741147|emb|CAK20267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 470

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 204/464 (43%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  VD+ L +L +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPTDFPVILVDNTLLSLQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L   S+  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LSNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    +    +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIHAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R      +    +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKKME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421
             G+  +  VL DM E+GELS   H + AEVL    I  V+L G  + A     +     
Sbjct: 366 SKGK-PKYLVLADMLELGELSTKLHRESAEVLEKDTIEKVFLYGEAMKAFGTVAETKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKVQHFDTKESLETALLSEVNGNEWILVKGSYGMGLKDVVENLI 468


>gi|313114879|ref|ZP_07800378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622829|gb|EFQ06285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 460

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 126/448 (28%), Positives = 201/448 (44%), Gaps = 13/448 (2%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            +  V  ++ DSR + P   F A  G  +DGHDF   A++ GA  VVVN  +       +
Sbjct: 21  EEVQVELVTTDSREVRPGCIFVAFPGEKFDGHDFAAKALENGAVYVVVNHPVEGVPAEKA 80

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                  D   A+  +    R +    ++ +TGSVGKTTTK+M   AL+   +T    G+
Sbjct: 81  ---ILCPDSYHAMMVMGANYRSQYHPKMVGVTGSVGKTTTKQMTYAALAGFGETIKTEGN 137

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +G+P TL R+  + ++ + E+GMSH GEI  L    RP + +IT I  +H+ N   
Sbjct: 138 QNNELGMPRTLMRLESNTEYAVIEMGMSHAGEIDRLARAARPDVGIITCIGVSHIGNLGS 197

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E I  AK EI  GL +   + LNYDD F     AK  A      +S          L  
Sbjct: 198 QENICKAKLEICNGLPEGAPLVLNYDDKFLR--AAKLPAHVKPVWFSLADENADVCALSI 255

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            ++    S++    +  +  V    +G H   N L      + L  D    IK LS F  
Sbjct: 256 RQEEDGMSFVLEDQEEGTFVVKIPAMGKHNVANALAAYCAATRLGCDPRGVIKGLSNFE- 314

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              +  R +  ++    T+I++ YNANP SM    + L+        RR A+LGDM E+G
Sbjct: 315 ---QTGRRQKVVHSKGVTVIEDCYNANPDSM---KAALAMFKEFPCKRRFALLGDMLELG 368

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSL 441
           ELS+  H +L  + +  ++  +   G +       A  + +   ++         + + +
Sbjct: 369 ELSREAHEELGRLAAESDLYCLVTYGENAKRTAVVAAAKGVKTLHANNYREAADALLNRI 428

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             GD ++VK+S      +++ +   E  
Sbjct: 429 EPGDALLVKASRGMALEKVLEIFYAEQK 456


>gi|302877574|ref|YP_003846138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580363|gb|ADL54374.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Gallionella
           capsiferriformans ES-2]
          Length = 483

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 142/469 (30%), Positives = 224/469 (47%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +       + + GH I          +S D+R I   + + A++G  +DG DF   A++ 
Sbjct: 1   MMLLAQAAKVLHGH-IKGPTDARFMAVSTDTRKIKAGDLYIALRGEKFDGADFAAQAIES 59

Query: 64  GAGLVVVNTDMVAS---IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA  V++N D   +   I +    +  V D   AL +LA   R +    ++AITGS GKT
Sbjct: 60  GATAVLMNADSFEARSLILNPQSSILLVADTRIALGQLAAHWRQKFNIPMVAITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L S   +        G++NN IG+PLTL ++     + + E+GM+H GEI 
Sbjct: 120 TVKEMLASVLRSAAGSDDAVLATKGNFNNDIGMPLTLLQLNAQHRYAVIEMGMNHPGEID 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +LT +  P++A+I   + AHL     +E +A AK EIF GL+  G+  +N DD F  L +
Sbjct: 180 YLTRIACPNVALINNASGAHLEGMGSVEAVAHAKGEIFSGLQPGGSAIINADDEFAPLWR 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                 G  ++  FG S ++D  +  W+       ++V+       V     G H A+N 
Sbjct: 240 ---CLAGANSLLEFGLSGHSD-VVGAWQPNGAGLRLDVKTPVGDFTVEMQVPGEHNARNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L        L   +++ +  LS F    GR    +    +    LID++YNANPAS+KAA
Sbjct: 296 LAVTAAAIALNLSLESIVAGLSKFSGVAGR---LQRKPAREGAVLIDDTYNANPASLKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I+VL+ +S    G+R+ VLGDM E+GE + +FH  +   +    I +++  G        
Sbjct: 353 IAVLAAMS----GQRVLVLGDMGELGEDTAAFHAGIGINVRESGIENLYALGELSREAVR 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +   + E +D L   +   L  G  V+VK S      R++  L 
Sbjct: 409 EF--GVGALHFEHIDALLAELDKELKVGTTVLVKGSRFMKMERVVKHLE 455


>gi|225571397|ref|ZP_03780393.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
 gi|225159873|gb|EEG72492.1| hypothetical protein CLOHYLEM_07495 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 204/471 (43%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++ +A  G   G          G+ IDSR +     F AI G + + H FI 
Sbjct: 1   MKNL-TLENIAKACHGTYHGDESKKSREAAGVVIDSRKVEKDYLFVAIDGENVNAHKFIP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             ++KGA  VV + D    +G    P   V+    AL  +A   R     T++ ITGSVG
Sbjct: 60  DTIEKGALCVVSHED----LGDTDFPYILVESTGQALLDIAKLYRDSFDVTVVGITGSVG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TKEM+   +S   K +  +G++NN  G+P+T+  M    +  I E+G++H GE+R L
Sbjct: 116 KTSTKEMIASVVSQKYKVHKTLGNFNNEWGLPITIFEMDESHEVVILEMGVNHFGEMRRL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +  P I VIT I  AHL  F   E I   K+++ + ++  G+I LN DD     L +K
Sbjct: 176 SSVASPDICVITNIGIAHLEFFKTREGILQEKSQMIQDMKNGGSIILNGDDD----LLSK 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +   T   FG +++             + +   + L                  +  
Sbjct: 232 MGPVKGVTPVLFGTNEDCQCYASGIVPMGLKGTACTIHLPDGEAFDCLIPTPGAHMVSNA 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    V          IKA                 ++ G   ++D+ YNANP S KAAI
Sbjct: 292 LAGAAVGAALGLTADEIKAGIE---AHTTLPGRNNIISTGSLMILDDCYNANPVSTKAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL        GR++AVLG+M E+G   +  H ++ E  + + I  V   G     + ++
Sbjct: 349 DVLDMAI----GRKVAVLGNMGELGNNEKELHREVGEYAAKHGIDVVCGIGDLAKEITES 404

Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +      H+          +   + +GD V+VK+S+   F  ++  L +
Sbjct: 405 AAKGASTETHWFAAKQDFLAEMHHIIKEGDNVLVKASHGMQFPEIVEQLKK 455


>gi|313500441|gb|ADR61807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida BIRD-1]
          Length = 455

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 210/464 (45%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 1   MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++      + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVEREVAG----VDLPQLLVKDCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  + +    G  K         +         +   G+++ V  + +G H   N L   
Sbjct: 235 AHKVVSFAR-GNPKADFHASDIGRDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +      L+   P +GR       +      +ID+SYNANP SM AAI +L
Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMAHAVKAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|16273060|ref|NP_439292.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus influenzae Rd KW20]
 gi|1171074|sp|P45061|MURF_HAEIN RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|1574689|gb|AAC22789.1| UDP-MurNAc-pentapeptide synthetase (murF) [Haemophilus influenzae
           Rd KW20]
          Length = 457

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 214/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEKINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+  +     S+ S   +      +E+    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  +GDM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKGYDA----FRILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|308069884|ref|YP_003871489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
 gi|305859163|gb|ADM70951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Paenibacillus polymyxa E681]
          Length = 467

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 215/468 (45%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63
           T   +     G   G    +  V G+  DSR    Q  F  + G  +DGH+++     + 
Sbjct: 4   TIGQIASMCGGILHGETDAEQMVEGVFTDSRRPQSQGLFVPLVGERFDGHNYVQQIVSEA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A   +   +  A     +     V+D L AL  LA A    +  +++ ITGS GKTTTK
Sbjct: 64  SAAAFLWQKNHGAPPSENA---IEVEDTLEALQHLAAAYLRETGVSVVGITGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   L +  K +   G+YNNHIG+PLT+  MP D D  I E+GMS  GEIR L ++ +
Sbjct: 121 DIVNALLGTTFKVHKTEGNYNNHIGLPLTVLSMPQDTDILILEMGMSGRGEIRLLANIAQ 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT I  +HL       EIA AK EI  GL+  G +  N D+     + A+S  + 
Sbjct: 181 PDVAIITNIGESHLLQLGSRAEIARAKLEITSGLKPGGLLIYNGDEPLLSQVLAESETVK 240

Query: 244 IK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +   +++FG +   D    +     E S   +  Q          +G H   N L  L 
Sbjct: 241 PEGLKLFTFGLATGNDDYPTEITSDGEGSL-FITAQSGKEAFRLPLLGQHNVVNGLAALA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D D   K LS     +  G R          T+++++YNA+PASMKAAI  LS
Sbjct: 300 VARHFNVDADHIRKGLS---SLKLTGMRIEVVNCPNGLTVLNDAYNASPASMKAAIQTLS 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
                 +GR++AVLGDM E+G   + FH ++    + +++  ++  G    ++       
Sbjct: 357 AY--KTDGRKVAVLGDMLELGPEEKQFHEEIGIFAAKHDVEVLFTYGALGTSIAQGAQGL 414

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +VH       L   +Q  L   D+V+VK+S       +++ L  
Sbjct: 415 MPTANVHAYTDKQELIQHLQVYLHANDIVLVKASRGMRLEEIVDALKN 462


>gi|251792019|ref|YP_003006739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533406|gb|ACS96652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 459

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 211/478 (44%), Gaps = 31/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59
           M  L +   L   +    +G   +  V  +S DSR  I+    FFA+KG H+D H ++  
Sbjct: 1   MITL-SLSQLASILDAQLLG-DGELTVENVSTDSRQSISKG-LFFALKGEHFDAHHYLDK 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV++G    VV         +  I    V D   AL +LA   R +     +A+TGS GK
Sbjct: 58  AVEQGCIAAVVERQT-----NSPIAQLVVKDTRLALGQLAKWLREKINPKTVAMTGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           TT KEM    L      +  +   +    N IGVPLTL R+     F + ELG +H+GEI
Sbjct: 113 TTIKEMTAAILQQSAVDFDDVLFTHGNFNNDIGVPLTLLRLTEQHKFAVIELGANHIGEI 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            + T L +P +A++  +A AHL  F  ++ +A+AK EI+ GL   GT  +N   ++ +  
Sbjct: 173 AYTTALAQPDVALVNNVAAAHLEGFGSLDGVATAKGEIYRGLTSNGTAIINLAHNYQQKW 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +A+     ++       +  AD+         + +   +     S+++    +G H   N
Sbjct: 233 QAEIADHSVQYFAY--DNPKADYYAENIVFSEQGASFLLHTPKGSIQIHSSYLGEHNVSN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A +      L++    +GR        N     L+D++YNAN  SMK+
Sbjct: 291 ALAATALAMNVGASLQDVQNGLAMKSQVKGRLFPIEPCEN---LLLLDDTYNANVDSMKS 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL +        R+ V+GDM E+G+ +Q  H ++A+      +  V   G     + 
Sbjct: 348 AISVLQKYPA----FRVFVVGDMAELGDNTQLCHQEVADFAHAAKLDLVLSCGNASEVIS 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLV-----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                     +      L  ++ S +         VV+VK S S     +I+LL + F
Sbjct: 404 AV----NSGKHFTDKTELASYLISVIKQQLTEQKVVVLVKGSRSMKMENVIDLLKDSF 457


>gi|12084404|pdb|1GG4|A Chain A, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
 gi|12084405|pdb|1GG4|B Chain B, Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide
           D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2.3 Angstrom
           Resolution
          Length = 452

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 132/463 (28%), Positives = 206/463 (44%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KE 
Sbjct: 63  GALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEX 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS    T    G+ NN IGVP TL R+  + D+ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILSQCGNTLYTAGNLNNDIGVPXTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL + G    N D++ +   ++   +  + 
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIXNADNNDWLNWQSVIGSRKVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  + N+DF        S  +   +Q    S++V+    G H   N L    +   
Sbjct: 238 R--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSXS 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A +D     L+      GR    + A N     L+D+SYNAN  S  AA+ VL+    
Sbjct: 296 VGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSXTAAVQVLA---- 348

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GD  E+G  S++ H+ + E      I  V   G    A+  A   S    
Sbjct: 349 EXPGYRVLVVGDXAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA---SGVGE 405

Query: 426 YSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 406 HFADKTALITRLKLLIAEQQVITILVKGSRSAAXEEVVRALQE 448


>gi|296116433|ref|ZP_06835047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977026|gb|EFG83790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 475

 Score =  249 bits (635), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 159/473 (33%), Positives = 242/473 (51%), Gaps = 20/473 (4%)

Query: 1   MNP--LWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHY 51
           M    LWT  +LL A  GH                  G+SID+R++A  + F A+ G + 
Sbjct: 1   MTAPILWTGTELLTATGGHFRASPHPGAASCEGLRATGVSIDTRTLAAGDIFVALVGENS 60

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           DGH  I  A+  GA +V+ + D     G     +  VDD L ALN +A  AR R    +I
Sbjct: 61  DGHAHITRALDAGAAVVIAHRD----PGVEDARILLVDDTLSALNAMAAFARTRFAGRMI 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGSVGKTTTK+ML  AL +   T+  + SYNNH GVPLTLAR+P    F + E+GM++
Sbjct: 117 AVTGSVGKTTTKDMLRHALGACGPTHWAVASYNNHWGVPLTLARLPASAMFCVCEVGMNN 176

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  L  +VRP +AVITTI  AHL +   +E IA  K+++   L + G   +  D + 
Sbjct: 177 PGEIAPLAQMVRPDVAVITTITGAHLGHMGSLEAIAREKSDLIAALPRDGVAIVPDDVTG 236

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             +   ++   G   +++ G    +  ++  +++  +       + G S  V  H  G H
Sbjct: 237 MAIFATQARNHGA-RLWTAGTHPGSTARMEDFQRRPDGGAFRALIDGWSGTVNLHAPGRH 295

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           MA N L+ L     + AD+  A++ L+ F P  GRG        Q   +L+DESYNA+ A
Sbjct: 296 MAGNALVALTAAYAVGADMACAVRGLADFRPGAGRGAITPILHGQA--SLLDESYNASVA 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S++A + VL Q+       RIAVLGDM E+G  ++  H  L   +   +   V+  G ++
Sbjct: 354 SIRATLDVLGQVPARR---RIAVLGDMLELGAFARDQHESLLPDVRE-HADLVFCCGPNM 409

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             L D LP S    ++     L   +++++  GD ++VK S      ++++ L
Sbjct: 410 KYLFDLLPPSRRGAWAPDAATLAPQVRAAMRAGDAILVKGSLGLKMRQVVDAL 462


>gi|90961335|ref|YP_535251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
 gi|90820529|gb|ABD99168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius UCC118]
          Length = 456

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 217/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  GA 
Sbjct: 5   LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+M 
Sbjct: 64  ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +
Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+     L         + 
Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   N D         + ++  +V      ++   + IG +   N L  L + +I 
Sbjct: 239 VLTFGSLDNNDMCAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              VD   KAL+ F     R +            ++ + YN+NP ++K  +    Q+   
Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
            EG+RI VLGDM E+GE +   H +LA+ ++   I  V+L G  +  L + L        
Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSNLAQAINPDRIDSVYLCGELMGHLAEKLREKFDETQ 412

Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H+   + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 413 IHHYQKDDLLTLTSDLKNELMSDDIVLLKASHGIHLENVVSELI 456


>gi|300214209|gb|ADJ78625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus salivarius CECT 5713]
          Length = 456

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 126/464 (27%), Positives = 218/464 (46%), Gaps = 17/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A+   +        +  +  DSR I     F  +   + DGH ++  A+  GA 
Sbjct: 5   LAEVARALNIEAKEEWEDISITSVCFDSRKIESGALFIPLVAEN-DGHKYVEAAINGGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +I   SI V  V D L AL +L     ++    ++AITGS GKTTTK+M 
Sbjct: 64  ATLWQEDHSENIPD-SIAVLPVSDTLVALQQLGKHYLMKINPKVVAITGSNGKTTTKDMT 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++    +    ++NN IGVP+T+  M  + +  + E+GM   G++ FL+ L  P +
Sbjct: 123 AAVLATQFNVHKTFANFNNEIGVPMTILSMEPNTEVLVVEMGMDRYGQLDFLSKLAEPDV 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+  F   + IA AK EI  GL++ G + +N D+     L         + 
Sbjct: 183 AVITMIGEAHIEFFGTRDHIADAKMEITHGLKEDGELVINGDEP----LLTTKAKEVSQE 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +FG   N D +       + ++  +V      ++   + IG +   N L  L + +I 
Sbjct: 239 VLTFGSLDNNDMRAMDIVSDATKTSFKVAT-WPEVDFTINMIGAYNVFNALAALSVGNIY 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              VD   KAL+ F     R +            ++ + YN+NP ++K  +    Q+   
Sbjct: 298 HIPVDKMQKALASFDLTANRTEWLEAKNGAK---ILSDVYNSNPTAVKEVLYAFEQVP-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IH 423
            EG+RI VLGDM E+GE +   H DLA+ ++   I  V+L G  +  L + L        
Sbjct: 353 TEGKRIIVLGDMLELGEKAAEMHSDLAQAINPDRIGSVYLCGELMGYLAEKLREKFDETQ 412

Query: 424 VHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H+   + +  L   +++ L+  D+V++K+S+      +++ L+
Sbjct: 413 IHHYQKDDLLTLTSDLKNELMPDDIVLLKASHGIHLENVVSELI 456


>gi|150390643|ref|YP_001320692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950505|gb|ABR49033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 463

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 216/473 (45%), Gaps = 17/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ + H ++   +G  I    +  VN IS D+R +  +  F  + G  +DGH FIL A
Sbjct: 1   MIPI-SIHKIITVCKGKMILEGTKDQVNEISTDTRKMKEESLFVPLIGAFFDGHQFILQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +++GA   +V       +G L    V  V+D L AL ++    R  S    I +TGS GK
Sbjct: 60  MERGAIGALVQKGQEFPLGKLNDFYVIEVEDTLQALKEIGRHYRQNSNIPFIGVTGSTGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L +        G+ NN IG+PLTL  +    + G+ E+GM+ LGEI  L 
Sbjct: 120 TTTKDMIAGILETNFNVLKNEGNLNNQIGLPLTLFNLEPCHEIGVLEMGMNSLGEILSLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+PHIAVIT +  +H+ +    E I +AK EI   L +   + +N DD F + +K + 
Sbjct: 180 KTVQPHIAVITNVGFSHIEHLGSQENILTAKMEITTRLREKDYLLINGDDPFLKTVKEE- 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  I +FG   + D          E     +V +Q K         G H   N L+
Sbjct: 239 --SKTYRIITFGIDPSNDIYAENLVCLGEVGYRFDVMIQKKKHTFQVRQPGIHNVYNGLV 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +            K        + R       +  G   +I+++YNA+P SM    +
Sbjct: 297 ALWVGLHYQMTPLAIQKGFDRLELSKMRL----EIVTYGDVKVINDAYNASPDSM---KA 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DA 417
            ++ ++     R+IA+LGD+ EMG  ++  H  +   ++   + ++   G     +  +A
Sbjct: 350 AITVLNQSTGIRKIAILGDILEMGSFAEEGHRRIGSFIATSPVDYLITVGKSAQWIAREA 409

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +     H++ + + D     +++ L   DVV+VK S       ++N + E 
Sbjct: 410 VEQGFSQAHIYQTPSNDLAIKVLKTLLSPRDVVLVKGSRGMKMEEIVNFIQER 462


>gi|145595731|ref|YP_001160028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Salinispora
           tropica CNB-440]
 gi|145305068|gb|ABP55650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinispora tropica CNB-440]
          Length = 471

 Score =  249 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 124/474 (26%), Positives = 195/474 (41%), Gaps = 24/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL +  ++  A+ G  +   P   V G +  DSR + P   F A  G   DGHD+   
Sbjct: 1   MIPL-SLAEVAAAVNGQLVAADPSVAVTGSVEFDSRKVGPGGLFVAFPGERVDGHDYAEG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A++ GA  V+    +        +P+  VDD   AL +LA A   R    T++ +TGS G
Sbjct: 60  AIRAGAVAVLGTRVVA------GVPMVLVDDAQVALGRLARAVVDRLPDLTVVGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++    + +  T A  GS+NN +G P T  +   +  + + E G   +G + +L
Sbjct: 114 KTSTKDVIAALTARLGPTVAPPGSFNNELGHPYTALQADPETRYLVLEKGARGVGHVSYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AH+  F   E IA AK E+   L   G   LN DD     +  +
Sbjct: 174 CEVVPPQISVVLNVGVAHIGEFGSRETIALAKGELVAALPAEGLAVLNADDDLVAAMATR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++  AD +               +        V     G H   N L
Sbjct: 234 TRA----RVVRYGEAAEADVRAVDVVLDERGRPSFTLVTPEGRAPVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   V     AL        R             T+ID+SYNANPASM AA+
Sbjct: 290 AAAAVARELGMPVTELATALGELGLVSSRRMD--VFERVDGVTVIDDSYNANPASMAAAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+          IAVLG M E+G   Q  H+++  + +   +  + + G     + + 
Sbjct: 348 RALAGFRRRR---TIAVLGYMAELGPYEQDGHVEVGRLAAELGVDRLLVVGEAAAPIHEG 404

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                             G    ++  L  GDVV+VK S     + + + L  +
Sbjct: 405 ATSVRDWEGESVQLTDQAGAVEVLRGDLRPGDVVLVKGSR-YRTWEVADALRAD 457


>gi|254495862|ref|ZP_05108772.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
 gi|254354898|gb|EET13523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Legionella drancourtii LLAP12]
          Length = 442

 Score =  249 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 196/443 (44%), Gaps = 17/443 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+  DSR + P   F AI+G  +DGHDFI  A  +GA   VV      ++  ++I
Sbjct: 17  NAEITGVCTDSRELKPGSLFIAIQGERFDGHDFIKEAEAQGALAAVV----KYAVDGITI 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P F V D L AL K+A A R      +IA+TGS GKTTTKEM+   L     ++A  G+ 
Sbjct: 73  PQFVVPDPLHALAKIAAAHRHNIHCPVIALTGSNGKTTTKEMIAAILP--VPSHATKGNL 130

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG PL++ ++     + +FELG +H GEI     +V P + +IT IAPAH+  F  I
Sbjct: 131 NNHIGAPLSVLQLTSQHRYAVFELGANHPGEISHTVAIVHPDVTLITNIAPAHIEGFGSI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + +A AK EI +GL  +G   +N DD++                    +     +     
Sbjct: 191 DGVARAKGEIHQGLSTSGIAVVNDDDAYAHFWDDILVDKKTLR--FSIEHPAEVYAQDIH 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   + L    ++      G H  +N L        +   +      L+ F   
Sbjct: 249 LDAYGCAQFSLILPNGRIDTQLQVPGLHNVRNALAAAACCHAVGVAIKDIQHGLNNFGGV 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR         +   T+ID++YNAN  S+  A+ VL+       G++I V GDM E+G 
Sbjct: 309 KGRLM---ILSGKNQSTVIDDTYNANLRSVLVALEVLA----ERPGKKIFVFGDMGELGA 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +   H ++        I  +   G       D+        +    + L   +   L  
Sbjct: 362 WATQHHQEVGLAARRLGIDLLLSCGSFSKLATDSFGAG--GEHFTNQELLAQNLIEKLSP 419

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
             VV+VK S S    +++N LL 
Sbjct: 420 DTVVLVKGSRSSAMEKIVNKLLN 442


>gi|81429228|ref|YP_396229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|78610871|emb|CAI55923.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 458

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 194/467 (41%), Gaps = 21/467 (4%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++ +               V  ++ D+R + P   F  + G   DGHDFI  A + GA
Sbjct: 5   LSEIARMTGAKNETEQWATVEVTSVAFDARELRPGALFVPLAGNR-DGHDFINQARENGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +  +           PV  V D L A  +LA    L+    ++AITGS GKTTTK+M
Sbjct: 64  VATLWASARDDQ--PTDFPVLLVKDPLAAYQQLAKRYLLKINPKVVAITGSNGKTTTKDM 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L S    +    ++NN IGVP T+  M  + +  + E+GM   G++  L+ +  P 
Sbjct: 122 TAAVLGSQYNIHKTQANFNNEIGVPQTILSMEANTEILVIEMGMDRPGQLHALSEIAMPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A IT I  AH+  F   ++IA AK EI + L++ G +  + D+            +G  
Sbjct: 182 VAAITMIGEAHIEFFKTRDKIADAKMEITDFLKEDGLLVYDGDEPLLNE------RVGDL 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +        + +    ++    Q +  +   V   I    A N+   L  + I
Sbjct: 236 ERETFGSATTNTLYPIQVRAGETKT----QFKLNAWPDVAFEIPMMGAYNVNNALAAILI 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                             E    R    +      ++ + YN+NP +    +   S    
Sbjct: 292 GQHYHIKPEVMSKALANFEVTRNRTEWLVGTAGQRMLSDVYNSNPTAAIEVLRNFSHF-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +GRRIAVLGDM E+G  S+  H  LA VL    I  V+L G  +  L D L     + 
Sbjct: 350 ETDGRRIAVLGDMLELGTASKKLHESLATVLDPAQIQEVYLFGTEIKPLFDKLATIYPAE 409

Query: 423 HVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +HY E      L   +  ++   D+VV+K+S+     +++  L  E
Sbjct: 410 QLHYFEKTQQPELITALAETIQPSDLVVLKASHGLHLEKVVAALTTE 456


>gi|260899191|ref|ZP_05907586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107117|gb|EFO44657.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 454

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V   +      ++ P   V D   AL +LA       +   +AITGS GKT
Sbjct: 58  FEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++   
Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDTLWQSVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      +  ADF         E               +   +G     N+   +
Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +             R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 GAFR----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|260580218|ref|ZP_05848048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
 gi|260093502|gb|EEW77435.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Haemophilus influenzae RdAW]
          Length = 457

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 214/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+  +     S+ S   +      +E+    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSAKNIHHTSQGSTFTLISPQGEIEITLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLTDVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  +GDM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKGYDA----FRILCVGDMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|322373486|ref|ZP_08048022.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
 gi|321278528|gb|EFX55597.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C150]
          Length = 457

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 29/473 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +   + +       +N I  DSR I   + F  +KG   DGH+FI  A + 
Sbjct: 3   LTLHEIAKVVGAKNNVTAYEDVAINQIEFDSRKITAGDLFLPLKGVR-DGHEFIQTAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       D+ A           V+D L A  KLA     ++   +IA+TGS GKTTTK
Sbjct: 62  GALATFTEKDLPA-----DQAHILVEDALEAFQKLAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L        
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVDPFL------PS 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG+  +        +    +  +         ++     G + A N ++   + 
Sbjct: 231 NLEVVRFGEGSDLTVS----ELTEYKDHLTFSTNFLDGQITLPVTGKYNATNAMVAAYVA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    AL+     + R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 287 KHWGVTEENIFSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +   
Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLAPDAIDTVIFYGEDIADLSQLASQMFP 403

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  D +   I+ SL + D +++K SNS    R++  L  +
Sbjct: 404 IGHVYYFKKTADEDQFDAMVKRIKESLGEHDQILLKGSNSMNLARVVEELQSK 456


>gi|34499802|ref|NP_904017.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34105652|gb|AAQ62006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 453

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 148/467 (31%), Positives = 216/467 (46%), Gaps = 24/467 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T     +  QG  +G    G V+ +  DSR   P + F A+KG  +D HDF+   V +
Sbjct: 1   MMTLSQAARFAQGRLVG--ADGEVSRVITDSRLAQPGDLFVALKGERFDAHDFVAEVVAR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA  +V   D     G+    +    DD   AL +LA   R    A  I +TGS GKTT 
Sbjct: 59  GAAALV--RDGFELAGAS---LIQAGDDTRLALGRLAAGWRETQPAIRIGVTGSNGKTTV 113

Query: 123 KEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           KEML   L +        A  G++NN IG+PLTL ++     + + E+GM+H GE+ +LT
Sbjct: 114 KEMLAAILRAHAGADAVLATAGNFNNDIGLPLTLLQLKPQHRYAVIEMGMNHHGELSYLT 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP +A++     AH  +F   E++A AKAEIFEGL   G   +N DD+   L +A  
Sbjct: 174 GLTRPQVALVNNAMRAHFGHFGSTEDVARAKAEIFEGLIDAGVAVVNADDANLPLFRA-- 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A G     SFG    AD   R     +  S   +      + V     G H  +N L  
Sbjct: 232 -AAGSHRQLSFGL-GLADVSARDLALSALDSRFTLVSPAGQLAVSLPAPGEHNVRNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   +    + LS F   +GR    +   +    T+ID+SYNANP SMKA I V
Sbjct: 290 AAAALALEVPLAAIAEGLSAFAGAKGR---LQIKQSPRGLTVIDDSYNANPDSMKAGIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +     G R  V+GD+ E+GE + + H ++ E   L  I  ++  G        A  
Sbjct: 347 LAGLP----GPRCFVMGDIGELGEAAPALHAEVGEHARLRGIEQLFALGEASRRAVQAFG 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +      +++D L   + S L  G  V+VK S      R++  L++
Sbjct: 403 GAGQG--FDSIDELLECLDSRLASGTAVLVKGSRFMRMERVVEHLMQ 447


>gi|114763025|ref|ZP_01442455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544349|gb|EAU47357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. HTCC2601]
          Length = 477

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 175/475 (36%), Positives = 251/475 (52%), Gaps = 19/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G   G       NG+SID+R+IA  + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTAKDAAAATGGQVAG---DWEANGVSIDTRTIAKGDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA   +V+        +    +  VDDV   L  L  AAR R++A ++A+TGSVGKT
Sbjct: 56  LENGASAALVSRIPEGVDPAN---LLIVDDVQAGLEALGRAARARTRARVVAVTGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+ML + L +  + +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 113 STKDMLRVVLGAQSRVHAAEKSYNNHWGVPLTLARMPEDVDFAVIEIGMNHPGEIAPLSD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP +A+IT +APAHL+ F  +E IA  KA IFEGLE  GT  +N D     LL A   
Sbjct: 173 MARPDVAMITIVAPAHLAAFESLEGIAREKAAIFEGLEPGGTAVVNGDLPVSPLLVAAGE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I +FG+++    ++         + ++ +     +       G H A N +  L
Sbjct: 233 ARAAHVI-TFGEAEGNHHRVTHVDIGDSTTVVQGRAWRSPVLFKVSVPGRHFAVNGMGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY----RCALNQGFFTLIDESYNANPASMKAA 356
            +   L  D   A+ AL  +    GRG+R               LID++YNANPAS+ A+
Sbjct: 292 AVAHALGLDRALAVTALGQWTAGAGRGQRETILLDPVETHLSLELIDDAYNANPASLAAS 351

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+             GRRIA LGDM E+G    + H  +A++ ++  I  V   G  
Sbjct: 352 LEVLAGAKTRDGVGRVSHGRRIAYLGDMKELGATEAALHRAVADLPAMERIDLVHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +  L  ALP+    H++ET DG+   ++  +  GDVV+VK S S G  R+++ + 
Sbjct: 412 MRTLWQALPQHKRGHWTETADGMAARVRHDMDAGDVVLVKGSLSTGLGRVVDAIR 466


>gi|284008376|emb|CBA74780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arsenophonus nasoniae]
          Length = 452

 Score =  249 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 25/467 (5%)

Query: 10  LLQAIQGHSIGIVPQ----GFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    QG    I  Q     ++N ++ +SR   I     F A+KG H+DGH F   A   
Sbjct: 1   MATVTQGTLQQIDEQQAGSLWLNAVTTNSRQRPIK--GLFIALKGKHFDGHHFAEQATIA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V   +      +  P   V+D   A+ KLA   R +SKA +I +TGS GKT+ K
Sbjct: 59  GASALLVERPLT-----IHCPQVIVEDTRLAMGKLAAWVRSQSKAKVIGLTGSSGKTSVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L+    T    G++NN IGVPLTL R+  + ++ + E+G +H+GEI + T++VR
Sbjct: 114 EMVAAILTQSGMTLFTEGNFNNDIGVPLTLFRLTAEHEYAVIEMGANHIGEIAYTTNMVR 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++  +  AHL  F  +  +A AK EIF+GL + GT  +N     ++  ++      
Sbjct: 174 PDSVLVNNLFAAHLEGFGSLTGVAKAKGEIFQGLAEQGTAVINLASHDWKNWQSYFKQQQ 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S  K + ADF        S  S  E+        +     G H   N L    + 
Sbjct: 234 TLWRFSLTKQQQADFYAENIAIKSTGSEFELHTPIGVASIFLALPGKHNIANALAASALA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             + A ++     L+   P  GR      A       ++D++YNAN  SM AA  VLSQ+
Sbjct: 294 MSVGATLEQVSLGLAHVQPVSGRLYPIYLAPG---KLILDDTYNANTGSMIAAADVLSQM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G RI V+GDM E+G+ ++  H ++        +  V   G   + +     +S  
Sbjct: 351 P----GYRILVVGDMGELGDKTEKCHQEVGVATRQMKLDRVLSVGQQSVIISQ---QSGC 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
             +  +   L   +   + + +   V+VK S S     +++ L E F
Sbjct: 404 GEHFASKKELIAKLIPLIKEHETVSVLVKGSRSTAMEEVVHALQECF 450


>gi|126656986|ref|ZP_01728164.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
 gi|126621824|gb|EAZ92533.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. CCY0110]
          Length = 451

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 200/465 (43%), Gaps = 26/465 (5%)

Query: 7   FHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             ++   +  +       +    +N I+ D+R I   + F A+KG  +DGH FI +A+ K
Sbjct: 3   LSEIPNILSKNLKYLSKPLSNQLINKINTDTRFIDKNDIFIALKGEKFDGHSFIENAIAK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V+ ++   I S  I    V D L A  ++A   R +    II ITGSVGKTTTK
Sbjct: 63  GAIGVIVDHEVSV-ISSKRITQIIVKDTLIAYQEIANWWRNKLTIPIIGITGSVGKTTTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++   L    K +    +YNN IGVP TL  +  + D+ + E+ M   GEI  L+ + R
Sbjct: 122 ELIAAVLGVYGKVHKTQANYNNEIGVPKTLLSLTTNHDYAVIEMAMRARGEIALLSQIAR 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +IT +  AH+      E IA AK E+   + K     LN+DD       A+     
Sbjct: 182 PTIGIITNVGTAHIGRLGSREAIAEAKCELLAEMPKDSIAILNHDDQRLMETAARIWQGK 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T    G               + +      L+ + ++      G H A N L  L + 
Sbjct: 242 TITYGLEGGD------------ITGELLDNQILRVEGIDFPLPLPGRHNALNYLAALAVT 289

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D +   +        +    R +         L+DE+YNA   SM    + L  +
Sbjct: 290 KQLNLDWNLLTQG----VTVDLPKGRSQQYSLSNNIVLLDETYNAGLESM---KAALQLL 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                 R +AVLG M E+GE S   H ++  +     I  +++        A+   + ++
Sbjct: 343 KDTPGKRHLAVLGTMKELGEASAQLHQEVGAMAEKLGIDGLYILVDDPEAQAITQGV-KT 401

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           I      T + L   +   +  GD ++ K+SNS G  R++  + +
Sbjct: 402 IETECFPTHEHLIERLTQVIQPGDRILFKASNSVGLNRVVEAVRD 446


>gi|256848374|ref|ZP_05553817.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714972|gb|EEU29950.1| UDP-MurNAc-pentapeptide synthetase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 459

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 213/470 (45%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +A+     I    +  V+G++ DSR +   + F  ++G   DGH+F+  A Q 
Sbjct: 3   MNIAEIARAVDAQNDIEQWSEIEVSGVAFDSRKLKNGDLFVPLQGAR-DGHEFVATAFQN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D   S      P   VDD L AL +L      +    ++A++GS GKTTTK
Sbjct: 62  GASATLWAADR--SYEDDGYPRIVVDDPLAALQQLGKYYLHKINPLVVAVSGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GMSH GE+  L+ LV 
Sbjct: 120 DMIASILSTQMNVTKTYANFNNAIGVPVTLLNMESNTEAVVVEMGMSHFGELDELSKLVT 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH+  F   + IA AK EI  GL + GT   N D+     L  +     
Sbjct: 180 PDIAVLTMIGEAHIEFFGSRDRIADAKMEITHGLREDGTFVYNGDEP----LLRERAKDL 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG+  + D      +Q S+             E     IG +   N +  + + 
Sbjct: 236 KQGQKTFGRQLDNDIYATSVEQ-SDHDLRFKVNLWPDEEFTIPMIGEYNVNNAMAAMMVG 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L          L+     E    R      Q    ++ + YN+NP ++K  +  L+++
Sbjct: 295 HLLHVTPSHLKIGLAN---VELTENRAEWLTGQQGEKILSDVYNSNPTAVKEVLETLNEL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---- 419
                GRR+ VLGDM E+G+ S   H  LA  +   +   V+L G  + ALKD L     
Sbjct: 352 P--ETGRRLIVLGDMLELGDASAKLHAGLATEIDHQHFQKVFLVGNEMTALKDQLLADGY 409

Query: 420 RSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  + +  +   D L   +Q ++   D+V++K S+      ++N L  +
Sbjct: 410 PAADLKHYASDDQDQLIDDLQKTIQADDIVLLKGSHGIHLENVLNALKAK 459


>gi|220925312|ref|YP_002500614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
 gi|219949919|gb|ACL60311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacterium nodulans ORS 2060]
          Length = 494

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 191/482 (39%), Positives = 262/482 (54%), Gaps = 15/482 (3%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQG--------FVNGISIDSRSIAPQEAFFAIKGPHY 51
           M  PLWT   +L A  G                  V G+SID+R++   + FFAI+G   
Sbjct: 1   MTEPLWTLDAVLAATGGTLAAAGDDAAGRDGAAQPVAGLSIDTRTLKVGDLFFAIRGETR 60

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS 106
           DGHDF+  A+ +GAG  VV+    A +     P+  V     D VL A+  LA AAR RS
Sbjct: 61  DGHDFVRDALARGAGAAVVSQARAAELAGSG-PLVVVPEAGDDPVLAAMRALAAAARARS 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++A+TGSVGKT TKE L   L++   T+A + SYNNH GVPLTL RMP    FG+FE
Sbjct: 120 AARVLAVTGSVGKTGTKEALRHVLAAQGTTHASVASYNNHWGVPLTLGRMPAGSAFGVFE 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +GM+H GEI  L  LVRP IA++TT+ P H+ +F  +  IA AK EIF GLE  G   LN
Sbjct: 180 IGMNHAGEIAPLARLVRPEIAIVTTVEPVHIEHFRSLSGIADAKGEIFCGLEPGGIAILN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+  FE L A + A     I SFG+   AD +  +     + S ++  + G  +     
Sbjct: 240 RDNPHFERLSAHALASRAGRIVSFGEHPQADVRAERIVMRPDLSIVDASVLGVPVTYQLG 299

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  +  V  L AD+  A  +L+  HP  GRG+R    L +G   L+DESY
Sbjct: 300 TPGRHTALNSLAVMAAVHALGADLALAALSLAQLHPPVGRGERTLLRLREGEALLVDESY 359

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANPAS++AA++ L+ I   G+GRRIAVLGDM E+G  +   H +LA  +  + I  V+ 
Sbjct: 360 NANPASVRAALATLAGIEIRGQGRRIAVLGDMLELGSEAPRLHRELAASVEQHGIDLVFA 419

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +G  +  L ++LP       + T   L   + S +  GD V++K SNS    R++  L  
Sbjct: 420 AGPMMAELFESLPAGTRGVAAPTSAELLDAVLSEIRPGDAVMIKGSNSIRMGRIVEALKA 479

Query: 467 EF 468
            +
Sbjct: 480 RY 481


>gi|329117762|ref|ZP_08246479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326908167|gb|EGE55081.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 456

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 205/471 (43%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + ++   S+       +N I  DSR I   + F  +KG   DGHDFI  A +K
Sbjct: 3   LSLHEIAKVVEAQNSLSEFDDVPLNQIEFDSRKIVKGDLFLPLKGER-DGHDFIELAFEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA        +         P   V+D L A   LA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAAATFSEHPIEGK------PYLLVNDCLHAYQTLAKYYIEKMRLDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP + +  + E+G  H+G+I  L+ + +
Sbjct: 116 DMIEAVLATTYKTYKTQGNYNNEIGLPYTVLHMPDETEKVVLEMGQDHMGDIHLLSEIAQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T +A AHL  F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PRIAVLTIVAEAHLEFFGSREKIAQGKMQIVDGMDSHGILLAPGDPIIDPYLPDNQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++       +++ +          V     G + A N ++   + 
Sbjct: 236 ----------FGEGEEIFVKDIKEDKNSLTFTTNVLDQAVTLPLSGKYNATNAMIAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  ++AL      +    R           ++ + YNANP +M+  +   S I
Sbjct: 286 KLLAVSDEDIVEAL---ESVQLTKNRTEWKKAANGADILSDVYNANPTAMQLILETFSNI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             + +G++IAVL DM E+G  S S H  L   LS   I  +   G  +  L     +   
Sbjct: 343 PNNPDGKKIAVLADMKELGPDSVSLHSKLIMSLSPEKIDTLIFYGQDIQELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             HV++       +  + L    +  L   D +++K SNS    RL+  L 
Sbjct: 403 IGHVYFFKKDEQLDQFEELCQLTKEKLGQNDQILLKGSNSMHLDRLVEYLE 453


>gi|157826875|ref|YP_001495939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802179|gb|ABV78902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii OSU 85-389]
          Length = 450

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 147/463 (31%), Positives = 239/463 (51%), Gaps = 18/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+    + I      N I  +S+ I   + F A++G   DGHD+I  A
Sbjct: 1   MI--WNSKTLSDALG---LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+  +  +  +    +  VDD L AL +LA+  R  S A  IAITGSVGKT
Sbjct: 55  INQGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L   L     T+A  G++NNH+G+ + LA MP D +F IFELGM+H GEIR L  
Sbjct: 112 STKEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +E+IA AK EIFE  +K G   +N D + ++ + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I+ I++FGKS +A+          E S  +V L+ K  + +       + ++     
Sbjct: 232 KLSIENIHNFGKSSSAEL------ILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENY 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + ++   ++  +   + +       K     +N G   +I + YNA+P SMKAA+  L
Sbjct: 286 ASILLIIFLLNQDLNKAAGYLKNIPMTKGRGKIINIGNSRIICDYYNASPTSMKAALEYL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++G+M E+G+ S+  H +L   +     S V+L G +   + DALP 
Sbjct: 346 KQMPATNK---TAIIGEMLELGQNSERLHKELVPYILDSGCSKVFLVGANTKYIYDALPE 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L         + +++++K S      ++I+ 
Sbjct: 403 KITKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445


>gi|254509138|ref|ZP_05121238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
 gi|219547935|gb|EED24960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus 16]
          Length = 452

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 134/471 (28%), Positives = 209/471 (44%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L   +    +G      +N +S D+R+I P   F A+ G  +D HDF L+A
Sbjct: 1   MISLM-LSQLADELDAQLVGN--DAAINAVSTDTRTIEPGALFVALVGERFDAHDFALNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  ++V+  +         P   V D   AL +L        +   +AITGS GKT
Sbjct: 58  VEAGATALLVSRAL-----DTQTPQLLVKDTKAALGQLGKFVHQVCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   + +  +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMMNKGQVLFTAGNFNNDIGVPLTLLRSTPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL       +N D +  E  +    
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGSAAIVNLDSNGGEHWQE-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      +S   S    F  +     S ++  E+       EV    IG H   N L   
Sbjct: 232 ADKQVKTFSVLDSTADYFAHKITMNNSGEASFELLSPMGGFEVKLGIIGQHNVANALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A ++     L      +GR             TLID+SYNA+  +M       
Sbjct: 292 ALAFELGASIEMVQSGLRHLAKVKGR---VESIALTEKITLIDDSYNASVPAM----KAA 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +    +G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+      
Sbjct: 345 ADLLSSFKGVRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADARAISQ---- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468
                + +T D +  FI+  L   D    ++VK +NS G  ++   L E +
Sbjct: 401 QCQGTHFDTHDAMIEFIKQQLPLHDCAQTLLVKGANSAGMSKIAAALKEMY 451


>gi|257890699|ref|ZP_05670352.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|314948187|ref|ZP_07851581.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
 gi|257827059|gb|EEV53685.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus faecium
           1,231,410]
 gi|313645320|gb|EFS09900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium TX0082]
          Length = 450

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 1   MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 55  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 113 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 173 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 229 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 280

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 281 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 341 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 398

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 399 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 448


>gi|69248309|ref|ZP_00604711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|258615089|ref|ZP_05712859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Enterococcus faecium DO]
 gi|293560260|ref|ZP_06676757.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
 gi|68194453|gb|EAN08954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Enterococcus
           faecium DO]
 gi|291605710|gb|EFF35147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus faecium E1162]
          Length = 470

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 208/470 (44%), Gaps = 26/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ QA+      +     +  +  DSR I     F  + G   DGH+FI  A
Sbjct: 21  MN--LTIQEIAQAVGSECSAL---TKITNVEFDSRKITEGSLFVPLAGTR-DGHEFIQQA 74

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA     +  +       + PV  V D L A+ +LA     +  A ++AITGS GKT
Sbjct: 75  ITNGASASFWS--LPVEQAPKNFPVIPVADPLKAMQQLATYYLEKVGAEVVAITGSNGKT 132

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++    LS   KTY   G+YNN+IG+P T+  MP D +  + E+GM H  EI  L+ 
Sbjct: 133 TTKDLTASVLSEKYKTYKTQGNYNNNIGLPYTILHMPQDTEKIVLEMGMDHANEITELSL 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  A IT I  AH+ N    E IA AK EI +GL   G + +  D+     L     
Sbjct: 193 MAQPKAAAITMIGEAHIENLGSREGIAKAKMEITDGLVSDGLLVVPADEPLLTPL----T 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  ++T+ +FG               +E +          +E     I    + N+   L
Sbjct: 249 ATLVQTVTTFGI--------GNGDVHAEVTAKGKAQTDFVVEGETFTIPLPGSYNVTNAL 300

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +I      +  +             R           ++ + YNANP +M   +   
Sbjct: 301 IAYTIGRFFGLSIPEIRQGLAHVSITQNRTEWLTAGNGAAILSDVYNANPTAMGLVLDTF 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +GRRIAVL DM E+G+ S + H  ++E +     + ++L G  + ALK+ L +
Sbjct: 361 KNLP--TKGRRIAVLADMLELGKESLNMHAQMSEHIDPEKFAMIFLYGEQMHALKEELNQ 418

Query: 421 S---IHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + V Y E   + L   I+ +L   D +++K SNS G + ++  L +
Sbjct: 419 KYPQLPVFYLEKEKNKLIDAIKQNLEATDSIMLKGSNSMGLFEVVEQLQQ 468


>gi|332687107|ref|YP_004456881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371116|dbj|BAK22072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 461

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 218/468 (46%), Gaps = 19/468 (4%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF ++   +Q  +         +N I  DSR +A    F  + G   DGH FI+ A  +
Sbjct: 3   LTFWEIADVVQATNNWKQWSDFTINTIEFDSRQLASGSLFIPL-GGKTDGHQFIMDARSQ 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + + +  +S+     P+  V D L A+  LA+    +    +IA+TGS GKTTTK
Sbjct: 62  GAKAALWSKE--SSLAPEGFPILEVVDTLKAIQDLAMYYLKKLAPQVIAVTGSNGKTTTK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L+    TY   G+YNN IG+P T+  MP + +  + E+GM H  EI FL+ L  
Sbjct: 120 DMIAAVLAKKYITYKTQGNYNNQIGLPYTILHMPEETEMLVLEMGMDHADEIDFLSQLAS 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A IT I  AH+ N    +EIA AK  I +GL + G + +  ++   + L     A  
Sbjct: 180 PTVAAITMIGEAHIENLGSRQEIAKAKMGITKGLVEDGLLIIPENEPLLKPL----TANS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +TI +FG +  ADF   +  Q  E++    +L G  +       G +   N  + L I 
Sbjct: 236 TQTIKTFGFTNEADFV--ECVQLEEKNKTTFKLSGYQLPFTIPVPGKYNVDNACIALIIG 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                      + L+          R           ++ + YNANP ++   +    Q+
Sbjct: 294 KWFQVPEKEMQQTLAE---VHLTKNRTEWVTANNGVEILSDVYNANPTAVSLVLDSFGQM 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--S 421
                GRRI VLGDM E+G  S+  H  L++ L    I  V+L G  +  L   L +   
Sbjct: 351 --FTNGRRIVVLGDMLELGATSKMMHQQLSKHLFPAIIQEVFLYGTEMKNLFLILEKTYG 408

Query: 422 IHVHYSETMDG--LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            HVHY   M+   L ++++++L   D+++VK SN      +I  L ++
Sbjct: 409 NHVHYYPKMEKEHLIVYLKATLQPNDLLLVKGSNGMRLTEVIEALTKK 456


>gi|239626578|ref|ZP_04669609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516724|gb|EEQ56590.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 487

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 214/482 (44%), Gaps = 27/482 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  DL+ A  G  +       +  IS+DSR +   + F  I G + D H F+  A+  G
Sbjct: 6   FTCRDLVLATGGTLLLGKEDTPIRHISLDSRKMEGDDLFVPIIGENVDAHGFLCQAIVNG 65

Query: 65  AGLVVVNTDMVASIGSLSI-----------------PVFGVDDVLGALNKLAVAARLRSK 107
           A  V  +           I                     V D   AL    +  R R K
Sbjct: 66  AAAVFTSRHRQPEEVRADIIRQCGDDVPRMEAAMSAAWIEVADTKKALQDFGIYCRSRQK 125

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ ITGSVGKTTT+EM+  ALS+    Y   G+ N+ +GVP+T+A +P     G+ EL
Sbjct: 126 LPLVGITGSVGKTTTREMIAAALSAGFTVYKTPGNSNSQVGVPITIAAIPKQAQIGVIEL 185

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GMS  GE+  +  + R   AV+T I   H+      + I   K  I +G+ + G++ LN 
Sbjct: 186 GMSEPGEMTRIARIARVDCAVMTNIGVTHIEQLGSQDNILKEKLHIQDGMAENGSLILNG 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + L       G +    +G S +  ++       +         + K + V    
Sbjct: 246 D----DRLLRSVIPEGNRRKILYGMSDDCQYRGEDLHLVNGYPVFSAVHENKRVTVRLRV 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G HM  N L  L +       ++ A   L  F   +GR + +         T+ID+SYN
Sbjct: 302 MGSHMVSNALAALAVAHEYGIPMEAAAAKLEEFEGFKGRQQIFTLKGG---ITVIDDSYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SMKA + VL  + P G GRRIAVL DM E+G  +  FH ++ E ++++ +  V L 
Sbjct: 359 ASPVSMKAGLEVLGSMEPEGTGRRIAVLADMKELGPDAPRFHREIGEYIAVHPVDQVVLL 418

Query: 408 GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G     +   L      + V + E ++ +  ++  +L  GD V+ K SNS    + +  L
Sbjct: 419 GGLAAEIGHGLCASSSPVPVVFCEELEQVGQWLNGNLKQGDCVLFKGSNSMKLSQAVRHL 478

Query: 465 LE 466
            E
Sbjct: 479 EE 480


>gi|229159400|ref|ZP_04287420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
 gi|228624067|gb|EEK80873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus R309803]
          Length = 458

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 220/464 (47%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGIIIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVESG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA + R +    ++ +TGS GKT+TK+
Sbjct: 65  AVATLWMKDV--ANPPENLPVIFVEDTLLALQMLAKSYRDQLDVKVVGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILNLEENTEVAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    E IA AK EI  GL++ G    N D+        + + +  
Sbjct: 183 NAAIITNIGEAHLMDLGSREAIAEAKLEIVTGLQEGGVFVYNGDEPLLTNRVPEMNLMAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  D+        +  +      + +++      +G H   N L ++ I  
Sbjct: 243 TV--TFGDARANDYYPTTVTLQATGT-HFKMNKDENISFYLPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R          T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 HFGVTWEEMKQGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    I+ V+  G     + +       S
Sbjct: 357 GFAKK--IVVLGDMLELGDQEVQFHYEVGKLIDPAKIAFVFTYGRLGAQIAEGAKINFPS 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKAYDNKEALVKDLQAVVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|312866034|ref|ZP_07726255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
 gi|311098438|gb|EFQ56661.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus downei F0415]
          Length = 454

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 200/472 (42%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +FH++   +   + +       ++ I  DSR IA  + F  +KG   DGH+FI  A + 
Sbjct: 3   LSFHEIADVVGALNDVSQFEDSPIHSIEFDSRKIASGDLFLPLKGTR-DGHEFIPTAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA          + I    +P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 62  GAVA------TFSRIELDDVPYILVKDPLAAFQTLAKYYLEKMAVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  K Y   G+YNN IG+P T+  MP      + E+G  HLG+I  L+ + +
Sbjct: 116 DMIHDVLATTYKIYKTQGNYNNEIGLPYTVLHMPDSTQKLVLEMGQDHLGDIDLLSKIAQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I ++T I  AHL  F   E+IA  K +I  G+ K GT+ +  D    + L      + 
Sbjct: 176 PKIGIVTLIGEAHLEFFGSREKIAQGKMQIANGMAKDGTLIVPADKIINDYLPDNQKVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D  +   +    +  +   +      +     G + A N ++   + 
Sbjct: 236 ----------FGPDQDIFLTELVERKDSLSFAVNFMDGLIELPVTGKYNATNAMLATYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     +    AL      + R +  + +       ++ + YNANP +MK  +     +
Sbjct: 286 QLEGVADEAIRSALKNLVLTKNRTEWKKASNGAD---ILADVYNANPTAMKLILETFLTL 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
             +  G++IA+L DM E+G+ S   H  +   L+  ++  +   G  +  L     +   
Sbjct: 343 PANEGGKKIALLADMKELGKDSVQMHSQMIRALNPEDLDTLICYGEDIAELAQLASQVFP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V+Y       +    L   +Q+ L   D +++K SNS    +++  L  
Sbjct: 403 MGKVYYFKKTAEEDQFADLVKQVQTILQPADQILLKGSNSMQLDKVLEALEN 454


>gi|85712537|ref|ZP_01043585.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
 gi|85693671|gb|EAQ31621.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina baltica
           OS145]
          Length = 470

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 211/476 (44%), Gaps = 24/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + +   +  A+ G   G   PQ  +N +S D+R       F A+KG  +D HDFI  
Sbjct: 1   MISV-SLAWVAMAVNGQLRGASNPQQVINKVSTDTRDALDSALFIALKGEQFDAHDFISQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA  V+    +         P   V+D   AL  L  A +       IAITGS GK
Sbjct: 60  ALAQGAIAVITQQPLDEQT-----PHILVEDTRYALGLLGAAVKAEVAPKTIAITGSNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   +       A  G++NN IGVPLTL R+     + + ELG +H GEI + T
Sbjct: 115 TTVKEMLAAIIGQQYNVLATAGNFNNDIGVPLTLLRLEAQHQYAVVELGANHAGEIAYTT 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP +A++  ++ AH+  F  +  +A AK EIF+GL + G     Y+  +    +   
Sbjct: 175 SLTRPDVAILNNVSAAHVEGFGSVHGVAKAKTEIFQGLPEDGLAITPYESEYLPCWRN-- 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLM 298
                K + +FG S+ AD +  + +  S         +  +   V     G H  +N L 
Sbjct: 233 -VRAGKRLQTFGLSEQADVRASQIELNSLGQPTFKLSINDQHWTVSLQLSGLHNVKNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +    +     L+   P +GR    +   N    T+ID++YNA+ AS KAA+ 
Sbjct: 292 ASAAALEVGMSAEEIATGLANVAPVKGRLTPMQLTEN---VTVIDDTYNASVASTKAALD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L       +G  I VLGDM E+G  ++++H D+ +      IS  +  G    +  +  
Sbjct: 349 LL----GSYQGTTIMVLGDMAELGAEARAYHEDVGDHAIQAGISKFFTLGVLSQSASEVF 404

Query: 419 PRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                  +  +   L   I  ++      +   V+VK S S    R++N L E + 
Sbjct: 405 NGRG-GKHFSSFATLVDEILQTITQRSVSEHVTVLVKGSRSSHMERVVNALQEHYK 459


>gi|228477180|ref|ZP_04061818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
 gi|228251199|gb|EEK10370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus salivarius SK126]
          Length = 457

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 205/473 (43%), Gaps = 29/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAKVVGAKNDVTAYEDVAINQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  KLA     +++  +IA+TGS GKTTTK
Sbjct: 62  GALATFTEKELPA-----DQVHILVDDALEAFQKLAAYYLEKTEVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L+ L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSTLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +    + 
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPSDPIVNPFLPSNLEVVR 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          +L        +  +         +V     G + A N ++   + 
Sbjct: 237 ----------FGDGAELTVSDLTEFKDHLTFSTNFLDGQVTLPVTGKYNATNAMVAAYVA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 287 KHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 343

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     +   
Sbjct: 344 PKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDMVIFYGEDIAELSQLASQMFP 403

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 404 LGHVYYFKKTADEDQFDAMVKQIKESLGEHDQILLKGSNSMNLAKVVEELQAK 456


>gi|113869230|ref|YP_727719.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
 gi|113528006|emb|CAJ94351.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Ralstonia eutropha H16]
          Length = 466

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 23/477 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+         I G  +        + +  DSRS+ P + F A+KG  +D HDFI   V
Sbjct: 4   TPMTNLQQAAGWIAGARVCGDGAVEFSRVHSDSRSVEPGDLFVALKGERFDAHDFIADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+ ++ A      +P     D   AL +L    R +     +A+TGS GKTT
Sbjct: 64  ARGAAAVLVSREVDA-----GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++           G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEEQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + +P +AVIT     H      +E +A   A     L   G      D          
Sbjct: 179 AGIAQPTVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPANGVAVYPLDAESGGAYAPV 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                         +                  M+V+  G + +V    +G H  +N L 
Sbjct: 239 WRNAAGARRALSFGTSQRADVHATVTLVDGAQVMQVRAPGHAFDVRLALLGEHNVRNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +         V    + L+ F   +GR    +     G   +ID++YNANP SM+AAI 
Sbjct: 299 AIACALAAGVHVPAIQRGLAGFQAVKGR---LQVKYTPGGTVVIDDTYNANPDSMRAAID 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+  +      R+ VLGDM E+G+   +FH ++        I  +W +G   +    A 
Sbjct: 356 VLAGFAA----PRVLVLGDMGEVGDQGPAFHQEIGAYAKARGIGTLWATGELAVHAVQAF 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV-----VVVKSSNSCGFYRLINLLLEEFPA 470
                  +  T + L   ++     G V     V+VK S      R++  L+ +  A
Sbjct: 412 GAGGR--HFGTAEALAKALEEDSR-GMVEQVGAVLVKGSRFMRMERMVAALVADTSA 465


>gi|254480248|ref|ZP_05093496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039810|gb|EEB80469.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily protein [marine gamma proteobacterium
           HTCC2148]
          Length = 455

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 199/465 (42%), Gaps = 19/465 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+    +L + +QG   G         +  DSR IA    F A+ G ++DG+D++   
Sbjct: 2   MRPM-RLSELQEPLQGRITG--EDVCFTNVFTDSRQIAKNGLFVALVGENFDGNDYVEAV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   +V+        S ++P   V+D   AL +L    R      ++AITGS GKT
Sbjct: 59  AENGAVAALVSR-----SSSSALPQLCVEDTQTALGRLGAFNRDLYTGPLVAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K ++   LS    T A  G++NN +GVPLTL R+  + +F + E+G +  G+I +L  
Sbjct: 114 TAKNLINGVLSQRGATLATNGNFNNEVGVPLTLLRLSQEHEFAVVEMGAARQGDISWLCE 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +AV+    PAH+ +F  +E IA  K EIF+ L       +N D  + E  KA++ 
Sbjct: 174 LGRPSVAVLLNAMPAHMESFGSLETIARTKGEIFDALAAGDVAVVNADQPWAEDWKARAG 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I      G +     Q+         S          ++V     G H   N L  +
Sbjct: 234 TATILDFSLNGDAAVVATQIESHGIA--GSSFVAVTPKGCVDVSLRLPGEHNIANALAAI 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       +D     L    P  GR      A       +ID+ YNANP S  AAI  L
Sbjct: 292 AVGLACELALDEIAAGLESVAPVAGRLSVQVAASG---ALVIDDCYNANPGSALAAIDTL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      EG+   V+G M E+GE S   H  L        ++  W  G  +    DA   
Sbjct: 349 A----ASEGQGTLVMGAMLELGENSVELHRQLGVHAREAGLAQFWGVGAELKVAVDAF-- 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                + E  D   +   +S   GD V++K S      R++  L+
Sbjct: 403 GERGRWFEHCDQAVVAASASFSQGDTVLIKGSRGARMERVLQALV 447


>gi|28897230|ref|NP_796835.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839050|ref|ZP_01991717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366060|ref|ZP_05778526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878315|ref|ZP_05890670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896404|ref|ZP_05904900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|28805439|dbj|BAC58719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747478|gb|EDM58426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087569|gb|EFO37264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093181|gb|EFO42876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111360|gb|EFO48900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           parahaemolyticus K5030]
          Length = 454

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V   +      ++ P   V D   AL +LA       +   +AITGS GKT
Sbjct: 58  FEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++   
Sbjct: 173 LVKPVIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQSVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      +  ADF         E               +   +G     N+   +
Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +             R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 GAFH----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|198282529|ref|YP_002218850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665628|ref|YP_002424719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247050|gb|ACH82643.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517841|gb|ACK78427.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 450

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 210/461 (45%), Gaps = 20/461 (4%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++  ++ +   G  + G      + G++ DSR +   + F A++G   +G DF+  A+ +
Sbjct: 4   YSLKEIAEITGGALLPGSDGSQTIQGVTTDSREVLSGQFFVALRGTRCNGADFVPGAIAQ 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG V+V+         +S P   V D L AL  L    R R    ++A+TGS GKTT K
Sbjct: 64  GAGGVLVD-------IPVSAPGVLVRDTLVALQTLTAHWRQRFSLPLLAVTGSCGKTTVK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+LT  L+      A  G+ NNH+GVPLTLAR+  +  + + E+GM+H GE+  L+ L R
Sbjct: 117 EVLTAILNQSGPVLATRGNQNNHVGVPLTLARLGPEHRYAVLEMGMNHPGELTLLSGLAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I   APAHL     +  IA+AK EI  GL+  G   LN DD F +    +     
Sbjct: 177 PTLALINNAAPAHLEGLGSVAAIAAAKGEILSGLDNRGLTILNGDDPFADFWAER---AP 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +      + +    +            +EV+       +     G H  +N+L      
Sbjct: 234 GEVWRFSLEHRPTRVRGHWRAHEQGGGHLEVRAPQGQFTLEIPLPGQHNGRNVLAATTAA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +    +A++     +    R +         ++D++YNANPAS++AA+ VL+  
Sbjct: 294 LALDIPIPQIQRAVA---GLQTIPGRLQWRSGPHGSRMLDDTYNANPASLEAALRVLAAQ 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G+RI VLGDM E+G  +  +H     +     +  ++  G       +A     +
Sbjct: 351 P----GQRILVLGDMGELGPEAALYHHQAGLLARQLGVERLYTLGSLAEEAANAF--GTN 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +  L   +   L +  VV++K S +    R++  L
Sbjct: 405 AEAFSELPPLLAALHRRLDEETVVLIKGSRAARMERVVQAL 445


>gi|169334625|ref|ZP_02861818.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259342|gb|EDS73308.1| hypothetical protein ANASTE_01028 [Anaerofustis stercorihominis DSM
           17244]
          Length = 457

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 212/464 (45%), Gaps = 20/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + I G  I    +  V+G+ IDSR    +  FFA+ G   +GHDF L A + GA 
Sbjct: 6   IDTLSKMINGKIIRWGKENEVSGVVIDSRLAKKRSVFFALDGTEMNGHDFALSAYKNGAC 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VVV  ++  +          V+D L AL  +A + + R     +A+TGS GKTTTK+M 
Sbjct: 66  AVVVKREIEGA----DCFQIKVEDTLKALYDMAKSYKDRFDIPFVALTGSAGKTTTKDMT 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS   KT   IG++N+  GVPLTL  +    +  + E+GM+H GEI  ++ LV P +
Sbjct: 122 ASVLSKKYKTMKTIGNFNSTTGVPLTLFNLEQGDEIAVVEMGMNHKGEIEKISELVEPDL 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT +   H+ N    E I  AK EI +GL+K GT+ +N DD FF+        +    
Sbjct: 182 AMITNVGVTHIENLGSKENIFKAKTEITKGLKKGGTLLVNGDDEFFKDYTNDEFNVVKV- 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                   + DF+       S+ +   V   GK+          +   N L  +      
Sbjct: 241 -----GINHGDFRAADILYSSKGAKFMVDYNGKNYTFCTKIPAKYSVYNALFAIYTGFHF 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +   + L  F P   R K           TLID++YN+NP ++K A+ +L++I  +
Sbjct: 296 GLNYEQIKEGLDDFMPTGNRMKIEEVNG----ITLIDDTYNSNPEALKEALGLLNRIGGN 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----I 422
                +AVLGDM E+GE S+  H    +  +   +  +   G + +        +     
Sbjct: 352 NRK--VAVLGDMLELGEKSEEEHEACGKAAAENGVELLLACGDYAMHYIKGAGENGMDPG 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              Y    + L   +   L +GD V+VK+S    F  +++ + +
Sbjct: 410 KALYFFEKNYLVEEVFDFLKEGDFVLVKASRGMKFEDVVDAIKK 453


>gi|260912999|ref|ZP_05919484.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632989|gb|EEX51155.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 461

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 137/478 (28%), Positives = 213/478 (44%), Gaps = 29/478 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L + +    +G      V  IS D+R +     FFA+KG ++D H ++  A
Sbjct: 1   MLKLNT-QKLAEILNAKLVGNGL-VEVENISTDTRKMVVNSLFFALKGENFDAHHYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV          L +P   V+D   AL +LA   R      ++A+TGS GKT
Sbjct: 59  VAQGAVALVVQKI----NSHLDVPQLVVEDTKIALGELAKWVRETVNPLVVAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L     +        G++NN IGVPLTL R+  +  F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQKSAVNSDTVLFTEGNFNNDIGVPLTLLRLTPEHQFAVIELGANHQGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T L +P +A++  +A AHL  F  IE +A AK EI+ GL  +G   +N + ++     
Sbjct: 175 YTTSLAKPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYRGLPASGVAIINKEHNYSIKWA 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+      +   ADF     +     S  E+      + +    +G H  +N 
Sbjct: 235 QEIGERAIQYFAY--QDATADFYADNVQFNESGSEFELHTPQGQIHISLPYLGEHNVKNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +    K L +    +GR    +   N     L+D++YNAN  S+++A
Sbjct: 293 LAATALAMNVGASLTQVKKGLEMRSQVKGRLFPIQPCEN---LLLLDDTYNANVDSLQSA 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ISVL + S      RI ++GDM E+GE SQ  H  +A+     ++  V   G     +  
Sbjct: 350 ISVLQKYSA----FRILIVGDMAELGENSQLCHQQVADYAKSADLDLVLSFGTESAVISQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQ----SSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468
           A        +      L  +++      L +    V++ K S       +IN L E F
Sbjct: 406 A----NLGQHFTDKATLCAYVKPLIEQKLKENQKVVILAKGSRRMKMEDVINSLKETF 459


>gi|330811583|ref|YP_004356045.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379691|gb|AEA71041.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 455

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 207/464 (44%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L  A+    I        +G+SIDSR+IAP + F A+ GP +DGHD++   
Sbjct: 1   MLKALKLSELTSALNARLI--AADATFDGVSIDSRAIAPGQLFVALAGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++     + ++P   V+D   AL +L    R      + AITGS GKT
Sbjct: 59  AAKGAVAALVEREVT----NSTLPQLLVNDTRQALGQLGALNRAAYGNPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S LGEI +   
Sbjct: 115 TVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +PH+AV+     AH+  F G E+I  AK EI EGL+  G   LN DD  FE+ K ++ 
Sbjct: 175 MTKPHVAVLNNAGTAHVGEFGGPEKIVEAKGEIIEGLDADGVAVLNLDDKAFEIWKTRAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + N        +         +     +  V  + +G H   N L   
Sbjct: 235 ERKVLTFALSNLAANFYASDLD-RDARGCPAFNLHSPDGAERVQLNLLGTHNVANALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +   +  L+   P +GR       L      +ID++YNANP+SM AA+ +L
Sbjct: 294 AAAHALGVSLPGIVAGLNAVQPVKGRSVAQ---LASNGMRVIDDTYNANPSSMCAAVDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+GE +Q  H D+        +  ++  G  +     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGEWAQQGHHDVGAYA-RGKVDALYAVGPMMAHAVAAF-- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             H  +  T   L   + +       +++K S S     ++  L
Sbjct: 404 GEHARHFTTQAELIQALGAEQDPNTTLLIKGSRSAAMENIVAAL 447


>gi|148242245|ref|YP_001227402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. RCC307]
 gi|147850555|emb|CAK28049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. RCC307]
          Length = 464

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/474 (25%), Positives = 197/474 (41%), Gaps = 21/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M+P     DL + +                      IS DSR++ P + F  ++G  +DG
Sbjct: 1   MSPSLCLQDLARLLDAPVQRRSAPADPTTLAWTFEHISTDSRALQPGDLFIPLRGERFDG 60

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           HDF+  AV  G    ++  D    +    +    VDD L A  ++A+A R +    ++A+
Sbjct: 61  HDFLDAAVSVGVAGALIARDWAGYVPE-QLATVVVDDTLSAYQQIALAWRRQLHCPVVAV 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT+E++   LS +    + +G+ NN IGVP T+ R        + E+GM  LG
Sbjct: 120 TGSAGKTTTRELIKACLSPLGAIESSVGNENNDIGVPRTMLRSNSSHAGLVLEMGMRGLG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L+    P +AVIT I  AH+        IA AK EI + L+ +G + +   D   E
Sbjct: 180 EIHRLSVCAEPDVAVITNIGTAHIGRLGSRAAIAQAKCEITDRLKPSGLLVIPAGDPLLE 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              ++  +  ++ +               W    +   +E+  QG  +     G      
Sbjct: 240 AEVSRVWSGRVQRVALSDDPLEPGTPAPDWVAQLQGQSIELASQGLKLINPLEGRHN--- 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                    +  L A  +  + A  +              L      ++DE+YNA+P +M
Sbjct: 297 -----ARNFLLALAAAQELGVTAEQLRDLSVSLPGGRARRLRINGVNILDETYNASPEAM 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411
            A++ +   +     G R AV+G M E+G+ S S H  + E  +   +  + +   G   
Sbjct: 352 LASLEL---LKQQPGGHRYAVVGTMLELGDQSLSLHRQVGEKATALGLDGLVVVASGPEA 408

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL         +    + +     ++  L  GD V++K+S      RLI LL 
Sbjct: 409 SALMQGAAGLSKLVCVASPEAAAEPLKQLLRPGDHVLLKASRGIALERLIPLLE 462


>gi|301063214|ref|ZP_07203763.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
 gi|300442642|gb|EFK06858.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [delta proteobacterium NaphS2]
          Length = 476

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 221/473 (46%), Gaps = 15/473 (3%)

Query: 1   MNPLW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P W   +  ++++A+ G+ +   P+      + DSR + P + F+A+KG  +DGHDF+
Sbjct: 1   MAPRWGKISSKEIVKAVHGNLLHGNPRACFAAFNSDSRRVHPGDLFWALKGERFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
             AV++GA  VVV  +   S+ +   I V  VD+ L AL  LA   R +  A + AITGS
Sbjct: 61  HQAVREGASGVVVQREYTISVENRPEIAVIAVDNTLRALGDLAAWWRRQHTAKLAAITGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM    L    KT    G++NN IG+P+TL ++       + E+GM+H GEI 
Sbjct: 121 SGKTTAKEMTAAILEMENKTLKNPGNHNNLIGLPVTLLKLDESHKRAVVEMGMNHKGEIA 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  P  A I  +  AHL     ++ +A AK E+         I LN DD+      
Sbjct: 181 RLTEIAGPDTAAILNVGMAHLERLGDMDGVAEAKTELIAHASPDTKIILNGDDAVLMKHA 240

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K     +      G   +A   +    +  +    +++    +  +     G H  +N 
Sbjct: 241 TKFDRKFVTFGMKKGNHIHA---VNIETKGLKGIRFDLRWSDDTWPIQLPVSGVHNVKNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    I   L   V+   + L  F   +GR   ++C   +G   LID++YNANP++++ A
Sbjct: 298 LAAAAIALSLKEPVENIARGLRNFKGVKGR---FQCIPLEGDIILIDDTYNANPSALETA 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    ++    +GR I  LGDM E+GE + S H +    ++    S ++  G H   +++
Sbjct: 355 LLSALKM-VDRDGRLIVGLGDMLELGEAAVSAHREAGSRIAESGASRLFFMGTHGEHVRN 413

Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +     HV  SET D L   I       DV+ +K S    F ++   L 
Sbjct: 414 GAIAAGMPSNHVIISETHDELTANIIRKARPKDVIFLKGSRKMQFEKVSEGLE 466


>gi|260430917|ref|ZP_05784888.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414745|gb|EEX08004.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 464

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 175/467 (37%), Positives = 244/467 (52%), Gaps = 13/467 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +   A              +G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTASE---AAAATGGQATIDWQASGVSIDTRTLQPDDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V    +    +   P+  VDDV  AL  L  AAR R KA ++ +TGSVGKT
Sbjct: 56  LEKGAAAALVTH--IPDDVAADAPLLIVDDVQTALEALGRAARDRCKARVVGVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   +T+A + SYNNH GVPLTLARMP D ++ + E+GM+H GEI  L  
Sbjct: 114 STKEMLATILSDQGRTHASVASYNNHWGVPLTLARMPRDTEYAVIEIGMNHPGEIAPLAR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +  IA  KA IFEGLE  GT  +N D    ++L  ++ 
Sbjct: 174 QARPHVALVTTVAAVHLEAFESVAGIAHEKAAIFEGLEAGGTAIVNADLDHTDIL--RTC 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     +        +D++L    Q      +  +  G+ +       G H A N L  L
Sbjct: 232 AARHGAVIVDFGRTASDYRLTGVTQSPTDIHVTAEAMGQPIAFDVQSAGTHFAMNGLGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPASMKAAISV 359
                L  D+D AI  L+ + P  GRG R R AL  G    L+D+SYNANP SM AA+ V
Sbjct: 292 AACVALGVDLDAAIAGLAKWAPVTGRGVRERLALPDGGQIELLDDSYNANPTSMAAALDV 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         RIA LGDM E+G   ++ H  LA+V ++  I  V   G  + AL +ALP
Sbjct: 352 LAAAQGAR---RIAFLGDMKELGPQERAMHAGLADVPAMARIDKVHCIGPLMRALHEALP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + ET D +   +   +  GD V+ K S S    R+++ L +
Sbjct: 409 EDKRGLWFETSDEMARHLPGLVQAGDAVLAKGSLSMALARIVDGLRK 455


>gi|116628263|ref|YP_820882.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMD-9]
 gi|116101540|gb|ABJ66686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus LMD-9]
          Length = 457

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAEVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +  +   
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G     +  +       L    +  +                    G + A N ++   
Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S
Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     + 
Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 402 FPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|91205668|ref|YP_538023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
 gi|91069212|gb|ABE04934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia bellii RML369-C]
          Length = 450

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 144/463 (31%), Positives = 234/463 (50%), Gaps = 18/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+    + I      N I  +S+ I   + F A++G   DGHD+I  A
Sbjct: 1   MI--WNSKTLSDALG---LLISQSIITNEIQFNSKDIKKGDLFIALQGNK-DGHDYIQDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+  +  +  +    +  VDD L AL +LA+  R  S A  IAITGSVGKT
Sbjct: 55  INQGASAVIVSKQVDIADKN---KIILVDDCLKALEQLALYKRKNSNAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L   L     T+A  G++NNH+G+ + LA MP D +F IFELGM+H GEIR L  
Sbjct: 112 STKEALKTLLQHEALTFASRGNFNNHLGLLINLASMPDDTEFAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +E+IA AK EIFE  +K G   +N D + ++ + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEDIAEAKCEIFESFDKDGIAVINSDSNCYDRILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I+ I++F      D          E S  +V L+ K  + +       + ++     
Sbjct: 232 KLSIENIHNF------DKSSSAELILYEISGEQVHLKYKIYDAIIETTIPFIPKHFAENY 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + ++   ++  +   + +       K     +N G   +I + YNA+P SMKAA+  L
Sbjct: 286 ASILLIIFLLNQDLNKAAGYLKNIPMTKGRGKIINIGNSRIICDYYNASPTSMKAALEYL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++G+M E+G+ S+  H +L   +     S V+L G +   + DALP 
Sbjct: 346 KQMPATNK---TAIIGEMLELGQNSERLHKELVPYILDLGCSKVFLVGANTKYIYDALPE 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L         + +++++K S      ++I+ 
Sbjct: 403 KITKAYFKNIDELIASTNDLFKNDELILIKGSRGIKLDKIIDY 445


>gi|313885615|ref|ZP_07819365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619345|gb|EFR30784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eremococcus coleocola ACS-139-V-Col8]
          Length = 472

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 220/470 (46%), Gaps = 15/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  +    D+++A+       + +   V G+  DSR + P + F  + G   DGHD+I  
Sbjct: 1   MKAIK-LMDVVKAVHAIDYTALDRFISVTGVEFDSRKVKPGDLFVPLSGGATDGHDYIQQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA   + + +  A+     I +  VDD L A+  LA   R      +I ITGS GK
Sbjct: 60  AIKNGAVATLWSKEAQAAPAD-QIAIVLVDDTLVAMQALANYYRNSLNPKVIGITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L +  K +   G+YNN IG+P TL +MP D    + E+GMS  GEI  L+
Sbjct: 119 TTTKDMTANVLKAKYKVHKTEGNYNNEIGLPYTLLQMPADTQVVVCEMGMSDFGEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IAVIT I  +HL        IA AK EI +GL++ G      ++     L  ++
Sbjct: 179 KIAQPDIAVITLIGESHLEFLGSRANIAKAKLEILKGLKEDGLFIYPANEP----LLQEA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    SFG    ADF     K+   +++    +  + +      +G +   N ++ 
Sbjct: 235 GQALGDRARSFGLDNTADFYAYDLKEDKNKTYFHTNIDDQVL-CSIPVMGAYNVGNAMIA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +   L   ++ AI  LS F   + R             ++++++YNA+P S+KA +  
Sbjct: 294 LTVAQELKVPIEQAIFQLSQFKLTKNR---LEWLTASNGASILNDAYNASPTSIKAVLKS 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            SQ+    EGRR+  LGD+ E+G  S ++H  L++ +    I+ V+L G  +  L  AL 
Sbjct: 351 FSQVETQAEGRRLVALGDVKELGPESANYHAALSQEIDPKKIAKVYLLGPQMQHLYQALQ 410

Query: 420 RS--IHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   Y        L   IQ+ L   D ++VKSS       ++  L+
Sbjct: 411 AKFPKQALYYTENDHKALVATIQADLQVQDHLLVKSSLGTDMLYVVGKLI 460


>gi|114773351|ref|ZP_01450555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
 gi|114546285|gb|EAU49196.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [alpha
           proteobacterium HTCC2255]
          Length = 462

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 172/466 (36%), Positives = 254/466 (54%), Gaps = 10/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  D ++A  G S         NGISID+R++   + F A+K    DGH++I  A
Sbjct: 1   MS-LWSSKDAVKATSGVSRI---NWVANGISIDTRTLKMGDLFVALK-DQRDGHEYIKIA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   +V+   V      ++P+  VDDVL AL  +A  AR R++A +I ITGSVGKT
Sbjct: 56  FENGAAAALVSR--VPDGLDENLPLLIVDDVLSALESMAEFARDRTQAKVIGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L +  KT+A   SYNNH GVPLTLARMP + DF + E+GM++  EIR L  
Sbjct: 114 STKEMLKSILIANGKTHAAERSYNNHWGVPLTLARMPKETDFAVIEIGMNNPDEIRPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +  +A++  +AP HL  F  IE IA AKAEIFE L  +    +N D S F++L     
Sbjct: 174 LAKLDVAIVLNVAPVHLKAFKNIEGIAYAKAEIFENLSSSNIAIVNSDLSTFDILLNTVQ 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    + +FG +  AD++L    +   ++++  ++            G H A N +   
Sbjct: 234 KVRS-KLITFGHTDAADYKLISSSRYGNKTFVTAKMNNLDFNFYFGAEGDHFAINAMSVF 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +  +        S +    GRGKR    +  G   LIDESYNANP SM+AAI+VL
Sbjct: 293 AAAEAVGIERKNIGNTFSNWQAPSGRGKRSTIRIGTGKIELIDESYNANPISMEAAINVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           SQ      GR++A+LGDM E+GE    FH +LA++ S+  I  ++L G  +  LK  LP 
Sbjct: 353 SQ--SEASGRKVAILGDMGELGENEMLFHSNLAKIQSIKAIDILYLVGPMMRCLKKELPS 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + E++D L   I++ ++  D ++VK SN     +++  L +
Sbjct: 411 QKQCLWFESVDALIKEIENLVIINDTIMVKGSNYTKVSKIVEKLKD 456


>gi|26988067|ref|NP_743492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
 gi|24982791|gb|AAN66956.1|AE016324_6 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 1   MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++      + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVEREVA----DVDLPQLQVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGQGGIAILNLDDKAFDIWKARAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  + +        +        +         +   G+++ V  + +G H   N L   
Sbjct: 235 AHKVVSFARSNPKADFHASDIG-RDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +      L+   P +GR       +      +ID+SYNANP SM AAI +L
Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|149914522|ref|ZP_01903052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811315|gb|EDM71150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. AzwK-3b]
          Length = 479

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 177/476 (37%), Positives = 251/476 (52%), Gaps = 17/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +  +A  G            G+SID+R++ P + F A+     DGHDF+  A
Sbjct: 1   MT-LWTAAEAARATGGR---ASTDWEATGVSIDTRTLRPGDLFVALSAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+  +   + +   P+  VDDV  AL  +  AAR R++A ++AITGSVGKT
Sbjct: 56  LDKGAAAALVSH-VPPGVDAARAPLLIVDDVQTALEAMGRAARARTQARVVAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LSS  +T+A   SYNNH GVPLTLARMP D  F + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRDVLSSHGRTHAAEASYNNHWGVPLTLARMPADTQFAVIEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A++TT+APAHL+ F  +E IA  KA IFEGLE+ G    N D +   +L   + 
Sbjct: 175 MARPHVAMVTTVAPAHLAAFESLEGIAREKASIFEGLEEGGAAVYNGDLAVSPILAD-TA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + SFG+S     ++ +    +  +  E +     +       G H A N +  L
Sbjct: 234 ARHAAHLLSFGESPAMHHRVTRITLKNACTVAEGRAWRSPVLFKIMVPGRHFAVNAMGVL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN----QGFFTLIDESYNANPASMKAA 356
            +      D    + +L  + P  GRG R R  L+         LID+SYNANPAS+ AA
Sbjct: 294 AVTHARGLDRAKVVTSLGQWQPGSGRGARERIVLDIVDAHVVVELIDDSYNANPASLGAA 353

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P        +GRRIA LGDM E+G    + H  LAE  ++  I  V   G  
Sbjct: 354 LEVLAAAVPSNDMGRVSKGRRIAYLGDMKELGRTEAALHAALAEHPAMALIDRVHCVGPL 413

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L + LP      ++ET D +   +   L  GDVV+ K S S G  R++  + +
Sbjct: 414 MRHLWEVLPDGKRGRWTETADEMAANVARDLDAGDVVLAKGSLSMGLARVVAAIRK 469


>gi|312278890|gb|ADQ63547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus thermophilus ND03]
          Length = 457

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +  +   
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G     +  +       L    +  +                    G + A N ++   
Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S
Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     + 
Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 402 FPLGHVYYFKKTSDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|284053960|ref|ZP_06384170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrospira platensis str. Paraca]
          Length = 465

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 193/474 (40%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G           V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVSHPE--FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+        
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A    T    G     +    +  +              +                L
Sbjct: 239 QVWAGTTITYGLEGGILQGELLGHETIRVEGIDLPLPLPGSHNASNFL---------AAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  ++      +     +S     +    R +         L+DE+YNA   S    +
Sbjct: 290 AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLEST---L 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  ++     R IAVLG M E+GE S  FH  +       N+  +++          A
Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAE--AQA 404

Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +           +  L            + + L  GD V+ K+SNS G  R++ 
Sbjct: 405 MAEGAVGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|55821552|ref|YP_139994.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
 gi|55737537|gb|AAV61179.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus LMG 18311]
          Length = 457

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +  +   
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDPFLPSNLEVVR 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G     +  +       L    +  +                    G + A N ++   
Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S
Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     + 
Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 402 FPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|304437328|ref|ZP_07397287.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369584|gb|EFM23250.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 468

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 220/467 (47%), Gaps = 16/467 (3%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T+ ++  A       G V    V  I+ D+R +   + F A++G H+DG  F   A+++
Sbjct: 5   LTWDEICTATGASVRRGGVAGDTVLPITTDTRKVVAGDLFVALRGEHFDGTAFAAEALER 64

Query: 64  GAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  V+V+    A    ++ +    V   +D L A   +A A R++    ++AITGS GK
Sbjct: 65  GAAAVLVDQKTPATALTALDTARGGVLVAEDTLRAYQDIAHAWRMKFDIPVVAITGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++    LS   K      +YNN +G+PLTL  +  +    + E+GM  +G+I  L 
Sbjct: 125 TTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLGITPEDTAAVVEIGMRGMGQIAALA 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P I ++T +   H+     IE IA AKAE+   +   GT+ LN DD     +++  
Sbjct: 185 PITAPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAAMRS-- 242

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     + ++G S  AD +    +  ++ S   V   G+  E      G H   N L  
Sbjct: 243 SAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWDGERHEYAIPLPGRHNVSNALAA 302

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +L          L+    ++ R + ++       +TLI+++YNA+P+SM+A++  
Sbjct: 303 LAAGFVLGMTPQEMQVGLTHLTAEKMRYEVHQIGA----WTLINDAYNASPSSMRASLET 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            + + P   GRRIAVLGDM E+G  ++  H D+    +    + V   G       +A  
Sbjct: 359 TAALYP---GRRIAVLGDMLELGAAAEKAHRDVGRRAAELGFAMVVTYGKQAQWTHEAAE 415

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +     +++ +      +++S L+DGD V+ K S      ++I  L
Sbjct: 416 AAGCPACYHAASHADAAAYLRSHLMDGDTVLFKGSRGMRMEQIIAAL 462


>gi|289434123|ref|YP_003463995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289170367|emb|CBH26907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 457

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 120/464 (25%), Positives = 202/464 (43%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I P + F    G   DGH+F+  A + G
Sbjct: 4   TVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQAREMG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA+      +  +IAITGS GKTTTK+
Sbjct: 64  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYMQEVRPKVIAITGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 122 IMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      +EIA AK EI  G              + E L   S   G 
Sbjct: 182 DIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LSQIDGD 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS  ++    +    +E +      +   +E+    IG H   N +  +    
Sbjct: 237 FRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAAMLAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  +      AL           R      +    +++++YN++P +++  +     + 
Sbjct: 296 EIGIEGKKIQTALKNME---RSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMD 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
             G+  +  VL DM E+GELS   H + AEVL    I  V+L G  + A        I  
Sbjct: 353 SKGK-PKYLVLADMLELGELSVLLHQESAEVLEEGTIEKVFLYGDAMKAFGAVAEDKIGQ 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V + +T + L   +   +   + ++VK S   G   ++  L+
Sbjct: 412 GKVQHFDTKESLENALLKEITGNEWILVKGSYGMGLKDVVENLI 455


>gi|82703613|ref|YP_413179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411678|gb|ABB75787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 449

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 205/455 (45%), Gaps = 26/455 (5%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
               G+S DSR++A  E F A+ GP++DGHDFI+ A  +GA   +V  D +       IP
Sbjct: 6   IDFTGVSTDSRALARGELFVALVGPNFDGHDFIVQARDRGAMGALVQQDRLTGDQEYGIP 65

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY- 143
           +  V +   AL +LA   R R    ++A+TGS GKTT KEM+   L    +         
Sbjct: 66  LIRVQNTRLALGQLAAYWRARFTIPLVAVTGSNGKTTVKEMIASILRRAAEQAPEEMRTD 125

Query: 144 ------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                       NN IG+PLTL R+     + + E+GM+H GEI +L+ L +P +A+IT 
Sbjct: 126 APDAVLATQGNLNNDIGMPLTLLRLRERHHYAVIEMGMNHPGEISYLSRLAKPSVALITN 185

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              AH+     +E +A AK EIFEGL++ G   +N DD    L +  +    I       
Sbjct: 186 AGDAHIQGLGSVEAVARAKGEIFEGLDQQGIAVINADDPHNRLWRELAGNRQIIDFGLKS 245

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           K+         +K     + + + L     E      G H  +N L    +   +   + 
Sbjct: 246 KA----KVSADYKLTFSGAQITLILPQGVEETTLQVPGEHNVRNALAAAAVAVAVGVSLK 301

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           T    LS F   +GR    +        TLID+ YNANP S++AA++VL       EG++
Sbjct: 302 TIASGLSTFGGVKGR---MQRKCGVRGATLIDDCYNANPDSVRAALAVL----ARAEGKK 354

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           + VLGDM E+G+  + FH  + +   +  I  +   G       +     I   +   M+
Sbjct: 355 VLVLGDMGELGDKGREFHEQIGDEARIAGIDELMALGDLSAYAAEKF--GIGARHFRKME 412

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   I++       +++K S      R++  L  
Sbjct: 413 DLLANIETLPGPDVTLLIKGSRFMQMERVVKRLEA 447


>gi|163783691|ref|ZP_02178678.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881016|gb|EDP74533.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 445

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 222/464 (47%), Gaps = 29/464 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L + ++G   G  PQ  V G SIDSR +   + FFA+KG  +DGHDF+  A
Sbjct: 1   MIA----GELAKVLRGELRG-DPQARVEGFSIDSRQVGEGDVFFALKGERHDGHDFVTDA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA   VV  D+  +          V     AL +LA+  R   +  ++ + GSVGKT
Sbjct: 56  VDRGAVGCVVERDVEHAGKFS----IKVSSTQEALRELALYRRGIFRGEVVGVAGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE++   LS+   ++   G+ N+ IG+PL +  MP++VD+ + ELG S +G++  L  
Sbjct: 112 TTKELIHHLLSNAAASFRSEGNLNSQIGLPLVVCNMPLEVDYAVLELGASAVGDVERLVE 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P + VIT +   HL +F  +E++     EIF G  +     + +          + +
Sbjct: 172 VAQPKVRVITALGEEHLESFGTLEDVVKGNGEIFRGFTEDSRAVIPHY-------ALEYY 224

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L  + + +FG+    D    K +   + +  E   +G         +   + QN+L   
Sbjct: 225 DLPRERVTTFGE--GGDLNAGKVRLSLKGTEFEFWGEG----FSVPLLSRGVVQNVLAAF 278

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+++ L  D     +AL  F P +GR       LN G F ++D++YNANP S++ A++ L
Sbjct: 279 GVLTSLGYDPRDFREALKSFTPPQGRM----NLLNFGNFFVVDDTYNANPPSVRNALTTL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-LP 419
           + +    +   +AVLGDM E+G  S  +H ++ ++ +   I  +   G       +  + 
Sbjct: 335 ASLQTTSKK--VAVLGDMLELGVESGRYHAEVGKLGAELGIDVIIFHGEESKRSYEECIK 392

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +  + +  + +   +   + D ++++VK S       ++  
Sbjct: 393 HGGNALFCDKKEDIVDELLKYMRDKNIILVKGSRGMRMEWIVEK 436


>gi|170718779|ref|YP_001783962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
 gi|168826908|gb|ACA32279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Haemophilus
           somnus 2336]
          Length = 463

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 132/479 (27%), Positives = 208/479 (43%), Gaps = 27/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  +L        IG      V  +S D+R    +  FFA+KG ++D HD++  A
Sbjct: 1   MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       + +P   V D   AL +LA   R++     IAITGS GKT
Sbjct: 59  VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  + +         G++NN IGVPLTL R      F + ELG +H GEI 
Sbjct: 114 TVKEMTASILQKVVQDPDAVLFTQGNFNNDIGVPLTLLRFEPKHQFAVIELGANHQGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   LV+P +A++  +A AHL  F  IE +A AK EI++GL   G   + Y+ S      
Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSIEGVAQAKGEIYQGLNGKGIAIMEYEHSVLWKKY 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
                   +T     + K +D+  ++ +     S  +    +   +E+    +G H   N
Sbjct: 234 WHEQIGDAETRLFSTQGKKSDYYAQEIRLTETGSQFKLCCTEHGEIEINLPYLGLHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    +   L   ++     L      +GR              L+D++YNAN +S+  
Sbjct: 294 AVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEP---CPNLLLLDDTYNANVSSL-- 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             S +  +  + +  RI  +GDM E+G  S S H  +A+   + N+  V   G     + 
Sbjct: 349 -KSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVIS 407

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           DA        +      L  +I     Q       V++VK +       +INL+ ++F 
Sbjct: 408 DA----CDGVHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKFQ 462


>gi|88799427|ref|ZP_01115004.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
 gi|88777737|gb|EAR08935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Reinekea
           sp. MED297]
          Length = 447

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 140/467 (29%), Positives = 211/467 (45%), Gaps = 24/467 (5%)

Query: 4   LW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +W   T  +   A  G  IG      V  IS D+RS+   + + A+KG ++DGH ++  A
Sbjct: 1   MWSDPTLQNWADAGAGELIGD--DRVVTTISTDTRSLEAGDIYVALKGQYFDGHHYLSTA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG VVV      ++    +P   + D    L  LA   R R    +IA+TGSVGKT
Sbjct: 59  IHKGAGAVVVQ----DALPDCPVPQLVLSDTRKGLGVLAGILRDRFAGQVIALTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +T+ MLT          A  G++NN IGVP T  R+       + ELG +   EI +L  
Sbjct: 115 STRAMLTEIFKLQPGLLATEGNFNNDIGVPKTWFRLTDQHQRVLLELGANAQQEIAWLGS 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPHI+++   A AH   F G+E +   K EI +     G + LN DD  +     +  
Sbjct: 175 FSRPHISLLLNAAEAHTEGFGGLEGVRQGKGEIIDATHSEGGVVLNKDDPAYNRWLKQ-- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + I +FG+  +AD  L  +K  S  S   + +    + V    +G HMA N     
Sbjct: 233 -AGDRKIVTFGRHSDADVCLLSFKNNSHGSEYTLGMPDGDLSVSWPVLGKHMAINAAAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +         + LS   P      R     +     LI ++YNANPAS +AAI VL
Sbjct: 292 ATAWLAGVSALDIAQGLSAMQP---EPGRMEPVDSMHGGALIHDAYNANPASFRAAIDVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +        + + GDM E+G+ S + H ++        I H+W  G   L + DA   
Sbjct: 349 EDL----GEDTLLIAGDMAELGDESANLHREVGLYA-RGKIQHIWSVGKESLQISDAFG- 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               H+ E+++ L   + + L     V+VK S S G  R+++ L  +
Sbjct: 403 ---GHHFESIEELLAMLPAKLETETAVLVKGSRSSGLERVVDALRRK 446


>gi|306829916|ref|ZP_07463103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427927|gb|EFM31020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis ATCC 6249]
          Length = 453

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 202/471 (42%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + I     +     DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQAVGAKNDVSIFEDTQIEKAEFDSRLIAKGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVVTLTEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVNVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D      L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEAYL------PA 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +         ++     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLIERKDSLTFNANFLEQDLDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANKGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L+
Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLM 453


>gi|91776625|ref|YP_546381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
 gi|91710612|gb|ABE50540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylobacillus flagellatus KT]
          Length = 453

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 143/468 (30%), Positives = 221/468 (47%), Gaps = 26/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++ +A  G  +G      +  +  DSR + P + F A+KG  +DGHD+    + +
Sbjct: 1   MMYLSEIAKATGGTLVGQ--DVLIQSVGTDSRKLEPAQLFVALKGERFDGHDYARAVLSE 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++ D+ A+      P   V+D   AL +LA   R +    + AITGS GKT+ K
Sbjct: 59  GATAVLLSHDVGAT------PAVLVEDTRLALGQLAAYWRSKFSIPVAAITGSNGKTSVK 112

Query: 124 EMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L              G+ NN IG+PLTL R+     + + E+GM+H GEI +LT
Sbjct: 113 EMLAAILRVAAGADDAVLATQGNLNNDIGLPLTLLRLHERHRYAVVEMGMNHAGEISYLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP +A+I     AHL     +E +A AK EIFEGL   G   +N DDSF  L ++  
Sbjct: 173 RIGRPDVALINNATAAHLGGLGSVEGVAKAKGEIFEGLADDGVAVINADDSFAGLWQS-- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G + I  FG   NA      +   S    +++        +     G H  +N L  
Sbjct: 231 -LAGRRRIVRFGL--NAGDVTAGYALHSAGCDLQLSTPAGERALHLPVPGLHNIRNALAA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   +   +D   + L+ F   +GR    +    +    LID++YNANPASM+AAI V
Sbjct: 288 TAVALSMGVSLDAVAEGLAGFAGVKGR---LQRKPGRHGALLIDDTYNANPASMRAAIDV 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S    G+R+ V+GDM E+GE   + H +L        +  +   G       +A  
Sbjct: 345 LASHS----GKRLLVVGDMGELGENEAALHAELGAYAKAAGVDALHALGRLSAGAVEAYG 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 + ET++GL   +  +L     V+VK S      R+I+LL ++
Sbjct: 401 PG--ASHHETVEGLAAALLPALDADTTVLVKGSRFMRMERVIDLLQDQ 446


>gi|172039337|ref|YP_001805838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
 gi|171700791|gb|ACB53772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Cyanothece
           sp. ATCC 51142]
          Length = 452

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 125/460 (27%), Positives = 195/460 (42%), Gaps = 31/460 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  ++ Q +            +N I+ D+R+I   + F A+KG  +DGH F   A+ KGA
Sbjct: 13  SLKEISQPLSNKL--------INEINTDTRNITENDIFLALKGDKFDGHLFAEKAIDKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +++N  +  +     IP   V D L A  ++A   R + K  II ITGSVGKTTTKE+
Sbjct: 65  IALILNHKISVNSTKK-IPQIIVKDTLIAYQEIANWWRNKVKIPIIGITGSVGKTTTKEL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K +    +YNN IGVP TL  +    D+ + E+ M   GEI  L+ +  P 
Sbjct: 124 ISAVLGVYGKVHKTQANYNNEIGVPKTLLAITTSDDYAVIEMAMRARGEIALLSQIACPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT +  AH+      E IA AK E+   +       LN+DD       AK       
Sbjct: 184 IGIITNVGTAHIGRLGSREAIAEAKCELLAEMPTDSIAILNHDDQRLMETAAKVWQGKTI 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T    G               + +      L+ K M+      G H A N L  L +   
Sbjct: 244 TYGLEGGD------------ITGKVLENQILRVKGMDFPLPLPGRHNALNYLAALAVTQQ 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D    I+             R +    +    L+DE+YNA   SM    + L  +  
Sbjct: 292 LNLDWHPLIQG----VTVNLPQGRSQQYSLENDIILLDETYNAGLESM---KAALQLLKD 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIH 423
               R +AVLG M E+G+ S   H ++ E      I  +++        A+   + +++ 
Sbjct: 345 TPGKRHLAVLGTMKELGDASAQLHQEVGETAETLGIDGLYILVDDPEAQAIAQGV-KTVE 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                T + L   +   +  GD ++ K+SNS G  R++  
Sbjct: 404 TECFPTHEQLIQRLTEIIKPGDRILFKASNSVGLNRVVEA 443


>gi|291566713|dbj|BAI88985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Arthrospira platensis NIES-39]
          Length = 468

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/474 (27%), Positives = 193/474 (40%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   I G           V GI+ D+R++   E F A+ G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTINGEVSCDASANFPVIGITTDTRNLQRGEVFVALPGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ KGA   VV+ +   S      P+  V D L A   LA + R R    +I +TGSV
Sbjct: 61  AAAIAKGALCAVVSREFAVSHPE--FPLIPVADTLQAYQTLARSWRDRFPIPVIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+        
Sbjct: 179 LTRITRPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A    T    G     +    +  +              +                L
Sbjct: 239 QVWAGTTITYGLEGGILQGELLGHETIRVEGIDLPLPLPGSHNASNFL---------AAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  ++      +     +S     +    R +         L+DE+YNA   S    +
Sbjct: 290 AVLRAIAGWEISAEELYAPISTGLSLQMPQGRAKRYSLADDIMLLDETYNAGLEST---L 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  ++     R IAVLG M E+GE S  FH  +       N+  +++          A
Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETERLNLDGLFILADLAE--AQA 404

Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +           +  L            + + L  GD V+ K+SNS G  R++ 
Sbjct: 405 MAEGAMGVDFIDIQDLASPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|332142428|ref|YP_004428166.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552450|gb|AEA99168.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 469

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 205/464 (44%), Gaps = 17/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   + G  +       V  +S D+R+I     + A+KGP+++GHDFI  A   GA
Sbjct: 5   TLSWIAGKVNGKLVNGNADTQVLAVSTDTRTIESGAVYLALKGPNFNGHDFIEAAENAGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+ + ++       S+PV  V+D   AL  L  A +       IAITGS GKTT KEM
Sbjct: 65  SAVIASENVT-----TSLPVISVEDTKEALGLLGAAVKQHIAPKTIAITGSSGKTTVKEM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L+      A  G++NN IGVPLTL R+    ++ + ELG +HLGEI + T+LV+P 
Sbjct: 120 CAAILARRGNVLATNGNFNNDIGVPLTLLRLEPHHEYAVMELGANHLGEIAYTTNLVKPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A I   A +HL  F  +  +A AK+EIF+GLEK G   +N D  F E  + K   L   
Sbjct: 180 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLEKDGVAIVNVDSQFAEFWQGK---LKQT 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +F   +  D   +                      +   +      N+   L   ++
Sbjct: 237 KTLTFSPQQKNDADFQAEDITIGLDGCASFHLVCPQGEIAIQLTIPGVHNVGNALVAAAL 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                             +    R           L+D++YNAN AS+ AAI  LS  S 
Sbjct: 297 TLQVGANLENVRDGLIAMQQVSGRLNVKQLTDQVRLLDDTYNANVASVNAAIDTLSSFS- 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ VLGDM E+GE ++ +H  + E      I++++  G    +       +    
Sbjct: 356 ---GIRVLVLGDMKELGEKARFYHEQVGEYAKQKGINYLYTMGVLSQSASAVFNENGG-- 410

Query: 426 YSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCGFYRLINLLLE 466
           +   ++ L   ++S L     D+ ++VK S S    R++  +  
Sbjct: 411 HFSDVESLLAAMESDLLVQQRDISILVKGSRSSKMERVVEAVEA 454


>gi|86137687|ref|ZP_01056264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
 gi|85826022|gb|EAQ46220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. MED193]
          Length = 469

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 178/471 (37%), Positives = 256/471 (54%), Gaps = 13/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT     +A             V+GISID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MSALWTAA---EAATATGGEATGDWKVSGISIDTRTLQPGDLFVALKAAR-DGHDFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG  +V         +   P+  V+DV  AL  L   AR R++A +IAITGSVGKT
Sbjct: 57  LDKGAGAALVTH--RPDGVAADAPLLIVEDVQAALEGLGQVARARTQAKVIAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L+   +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  
Sbjct: 115 STKEMLACMLADQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPH+A++TT+A  HL  F  +  IA  KA I EGLE  G   LN D    ++L A++ 
Sbjct: 175 QARPHVAMVTTVAAVHLEAFEDVAGIAREKAAIMEGLEPGGVAVLNADIDEAQVLAAEAQ 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG+   +        +++L   K   E +  EV+   + M++    +G H A N L  L
Sbjct: 235 GLGVAHQWF--GESATEYKLLSTKISGEATLAEVRCGPEQMQLTIQSLGAHFAMNALGAL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+   ADV  A + LS++ P +GRG R   A+  G   L+D+SYNANP SM AA++VL
Sbjct: 293 ACVAAAGADVQRAAQVLSLWSPVQGRGARVEVAMEGGKLLLLDDSYNANPTSMAAALAVL 352

Query: 361 SQIS-----PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +           +GR+IA LGDM E+G    + H  LA++ +L  I  +   G  +  L 
Sbjct: 353 AATPDLGADAGVKGRKIAYLGDMGELGPQEVALHAGLADLAALETIDTIHCIGPLMAHLH 412

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ALP +    +  T   +   + S L  GD+V+ K S S G  ++++ + +
Sbjct: 413 QALPAAQRGFHYATSADVLPDLPSQLGCGDIVLAKGSLSAGLSKIVDGIRD 463


>gi|257065948|ref|YP_003152204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
 gi|256797828|gb|ACV28483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Anaerococcus
           prevotii DSM 20548]
          Length = 460

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 198/466 (42%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ + I G           + G+S DSR+I     +  + G  +DG  FI     KG
Sbjct: 5   SLGEIAKMIGGEISDEKYSNLLIKGVSTDSRTIQEGNLYIPLIGEVFDGRLFIKECEDKG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   + +TD      ++SIP   V+D L +L  LA A R       +I ITGS GKTTTK
Sbjct: 65  ASAFLADTDCKIK-NNISIPYIRVEDTLKSLQDLARAYRSELKNTKVIGITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L   L    K    IG+ NN IGVP T+  +  D +  I E+G    G+I   T++ R
Sbjct: 124 DLLYEVLKEKYKVQKTIGNLNNEIGVPKTILSLDEDTNIAIVEMGTDSFGDISLTTNISR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +HL      E I  AK EI EGL + G    N DD   +  K  S    
Sbjct: 184 PDIAIITNIGDSHLEKLKTKEGILKAKMEIVEGLSQDGYFIYNGDDPTMK--KEISSYEV 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + + SFG+  + DF ++       +       +          +G H   N  +T+ + 
Sbjct: 242 KQKMISFGEEDDNDFVVKSSDDNRGKVSFTHDGE----TYTIPLLGSHNIYNGGVTVLVS 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S+L    D   K LS   P   R              ++D+ Y +NP S+++ +     +
Sbjct: 298 SLLGLSTDQIKKGLSEVTPANNRSSIIEFEGFD----VLDDCYKSNPQSLRSGLKTTKLL 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +     I VLGDM E+G+     H  +   +   +I +    G     + +    +  
Sbjct: 354 GGYDSK--ILVLGDMLELGDSEDDLHYQVGSEIDPKDIDYCLFFGSLSKHMYEGALENFS 411

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + +  + + L   ++S +    +V VK S+      +I  + +
Sbjct: 412 KDRIFHFTSKNDLIDKLKSLITKSSLVFVKGSHGMHMEEIIESISK 457


>gi|319744788|gb|EFV97128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 486

 Score =  247 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + +   + +       +  I  DSR+I+  + F  +KG   DGH+FI  A   
Sbjct: 34  LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 92

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 93  GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 146

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 147 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 206

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A    + 
Sbjct: 207 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 266

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D +L+  +   E+  +  +      ++     G + A N ++   + 
Sbjct: 267 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I
Sbjct: 317 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +   
Sbjct: 374 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 433

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V++       +  D L   ++ +L + D +++K SNS    +++++L 
Sbjct: 434 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 484


>gi|157369002|ref|YP_001476991.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia proteamaculans 568]
 gi|157320766|gb|ABV39863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Serratia
           proteamaculans 568]
          Length = 453

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 206/471 (43%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L   +    IG      +  ++ D+R +     F A+KG  +D HDF +  
Sbjct: 1   MIPV-SLRTLADVLSAELIG--ADCQIVEVTTDTRQVTTGCLFVALKGERFDAHDFAVD- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    + +P   V D   AL +LA   R +    ++A+TGS GKT
Sbjct: 57  ----AVAAGAGALLVSKRLLVEVPQLVVKDTRLALGQLAAWVRQQVPTRVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T 
Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++   
Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAILNADNNDWPHWQSMLD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S   ++  DF     +   + +   +     + ++     G H   N L   
Sbjct: 233 GKTVWR-FSPQAAEGVDFFASDVQVNGKGTQFRLHSPFGTADIALPLPGRHNVANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +     A ++   + L       GR              L+D+SYNAN  SM AA  VL
Sbjct: 292 ALAMSAGASLEAVRQGLKQLQAVPGRLF---PIALSDHQLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  ++  H  + E   L  +  V   G     L +A   
Sbjct: 349 AEMP----GYRVMVVGDMAELGAEAEECHRQVGEAARLAGVDKVLGVGPLSQVLTEA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
           S +  + +    +   +   L +  V  V++K S S    +++  L E+ P
Sbjct: 402 SGNGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAP 452


>gi|300021774|ref|YP_003754385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523595|gb|ADJ22064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 467

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 192/470 (40%), Positives = 261/470 (55%), Gaps = 7/470 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWTF +L  A+ G +        V GISID+R++   + F A+K    DGHDF+  A
Sbjct: 1   MQPLWTFSEL-SAVFGVAPEGGTDQPVTGISIDTRTLQAGDLFVALK-DQRDGHDFVSPA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVG 118
            + GA   +V+   V    +    +F V D L AL  L  AAR R    A +IA+TGS G
Sbjct: 59  FKAGAAAALVSEGYV--RRAEDGALFRVSDTLKALEALGRAARDRLSPDARVIAVTGSAG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKEML   LS +  T+A   SYNNH GVPLTLARMP +  FG+FE+GM+H GEIR L
Sbjct: 117 KTGTKEMLRACLSHLGVTHASEKSYNNHWGVPLTLARMPRETRFGVFEIGMNHAGEIRPL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRPH A+ITT+   HL +F  +E IA AK EIFEGL   GT  + +D+     LKA 
Sbjct: 177 TKMVRPHAAIITTVEAVHLEHFPSVEAIADAKGEIFEGLLPGGTAIIKFDNPHAARLKAI 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +  LG     +FG S  AD          + S + V+L  + + +     G H+A+N L 
Sbjct: 237 AERLGA-KAVTFGFSAGADVCGDDLVLDHDGSTLSVRLGDRRIPLRIAMPGRHIAENALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  + AD++TA+  L+   P  GRG R    L+ G   LIDESYNANPASM+AA++
Sbjct: 296 VAAAIDAIGADIETALSVLAGLQPPGGRGARSVLRLDGGEALLIDESYNANPASMRAALA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ +      RRIAVLGDM E+G  +   H  L + +    I  ++  G H+  L DAL
Sbjct: 356 TLASLPRQRFPRRIAVLGDMLELGADAPGLHAGLKDAVEDAGIDVIFACGPHMKGLYDAL 415

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           P+S    Y++T   L   + S L  GD V+VK+SN      ++  L  ++
Sbjct: 416 PKSKRGGYAQTSSLLQPAVLSELRGGDAVMVKASNGTRLGAVVEALKSKY 465


>gi|325275014|ref|ZP_08141008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
 gi|324099853|gb|EGB97705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas sp. TJI-51]
          Length = 455

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 127/464 (27%), Positives = 200/464 (43%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L+  + G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 1   MLKPMSLSQLVPLLNGQQIG--ADAAFTGVSIDSRSVSAGQLFVALTGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++      + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVEREVA----DVDLPQLRVADCRLALGQLGALNRAAYDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAAEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP + VI     AH+  F G E+I  AK EI EGL + G   LN DD  F   KA++ 
Sbjct: 175 LTRPQVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFATWKARAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  + +        +            +           + EV    +      N+   L
Sbjct: 235 AHKVISFARSDARAD----FHASAIGRDARGCPSFQLHGAGEVAQVQLNVLGEHNVSNAL 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +   A   +     +     +    R    +      +ID+SYNANP SM AAI +L
Sbjct: 291 AAAAAAHAVGLSLAGIAAGLAAVQPVKGRTVAQIAPSGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++    +A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMKHAVEAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|156935394|ref|YP_001439310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533648|gb|ABU78474.1| hypothetical protein ESA_03252 [Cronobacter sakazakii ATCC BAA-894]
          Length = 452

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 203/463 (43%), Gaps = 21/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A   GA
Sbjct: 5   SLSQLAAILNGELHGADAD--IDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQAQAGGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT+ KEM
Sbjct: 63  GALLVSRKL-----DIDLPQLVVADTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L     T    G+ NN IGVP+TL R+  + ++ + ELG +H GEI +   L RP 
Sbjct: 118 TAAILGECGNTLYTAGNLNNDIGVPMTLLRLTPEHEYAVIELGANHQGEIAWTVSLTRPE 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +A AHL  F  +  +A AK EIF GL   G   LN D++ +   ++      + 
Sbjct: 178 AALVNNLAAAHLEGFGSLAGVAKAKGEIFTGLPANGIAILNADNNDWLNWQSVIGDRKVW 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                     +DF        S  +   ++     ++V+    G H   N L    +   
Sbjct: 238 R--FSPNLDTSDFSATNIHITSHGTEFTLRTPTGDVDVLLPLPGRHNIANALAASALAMA 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + A +      L+      GR        N     L+D+SYNAN  SM AA  VLS++  
Sbjct: 296 VGAPLQAIKAGLAKLKAVPGRLFPVHLGEN---QLLLDDSYNANVGSMTAAAQVLSEMP- 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G R+ V+GDM E+G+ +++ H  + E      I  V   G     +  A   S    
Sbjct: 352 ---GYRVMVVGDMAELGDEAEACHQQVGEAAKAAGIDKVLSVGTLSEGISRA---SGVGE 405

Query: 426 YSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
           +      +   +++ + +  ++  +VK S S     ++  L E
Sbjct: 406 HFRDKQAVIARLKTLINEHSIITLLVKGSRSAAMEEVVRALQE 448


>gi|55823480|ref|YP_141921.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
 gi|55739465|gb|AAV63106.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine
           ligase [Streptococcus thermophilus CNRZ1066]
          Length = 457

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 205/475 (43%), Gaps = 33/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +N I  DSR I   + F  +KG   DGHDFI  A   
Sbjct: 3   LTLHEIAKVVGAKNDVTAYKDVALNQIEFDSRKITAGDLFLPLKGAR-DGHDFIQTAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA       ++ A           VDD L A  +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GAIATFTEKELPA-----DQAHILVDDTLEAFQELAAYYLEKTGVDVIAVTGSNGKTTTK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  +TY   G+YNN IG+P T   MP D +  + E+G  H+G+I  L++L +
Sbjct: 117 DMIHDILATTYRTYKTQGNYNNEIGLPYTALHMPDDTEKIVLEMGQDHMGDIHLLSNLAK 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHA 241
           P  AV+T I  AHL  F   ++IA  K ++ +G+     + +  D      L +  +   
Sbjct: 177 PKTAVVTLIGEAHLEFFGSRDKIAQGKMQMQDGMPDGSLLLVPCDPIVDLFLPSNLEVVR 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G     +  +       L    +  +                    G + A N ++   
Sbjct: 237 FGDGAELTVSELTEYKDHLTFSTKFLDGQV------------TLPVTGKYNATNAMVAAY 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  + AL+     + R +  + A       ++ + YNANP +MK  +   S
Sbjct: 285 VAKHLGVTEENILSALANLQLTKNRTEWKKAANGAD---ILSDVYNANPTAMKLVLETFS 341

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            I  +  G++IAVL DM E+GE S   H  +   L+   I  V   G  +  L     + 
Sbjct: 342 AIPKNEGGKKIAVLADMKELGEQSVQLHTQMILSLTPDAIDTVIFYGEDIAELSQLASQM 401

Query: 422 ---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               HV+Y       +  D +   I+ SL + D +++K SNS    +++  L  +
Sbjct: 402 FPLGHVYYFKKTPDEDQFDAMVKQIKESLGEYDQILLKGSNSMNLAKVVQELQAK 456


>gi|219670077|ref|YP_002460512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540337|gb|ACL22076.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 482

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 124/487 (25%), Positives = 208/487 (42%), Gaps = 28/487 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    +   ++G   G   Q   +G  IDSR +   E FFA+ G   DGHD+I  A QK
Sbjct: 1   MWDSQRIADLVRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQK 59

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA +V+   + +     + +P    +  V+  L A+  LA A R    A ++AITGS GK
Sbjct: 60  GASVVIGEKERLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   LS   +T+  + + NN +G+P+T+ +   + +  I E+GM  LG+I FL 
Sbjct: 120 TTTKDMVAAVLSEKYRTHKNLENQNNELGLPMTILKATENTEVLILEMGMRGLGQIAFLC 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P I VIT I   H+      E IA AK E+ E L +TG+  LN +D +    +A+ 
Sbjct: 180 DIACPDIGVITNIGTTHMELLGSQEAIARAKWELIEALPETGSAVLNGEDEWSVK-QAEH 238

Query: 240 HALGIKTIYSFGKSKNADFQ------------LRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +         G+    D +              + +       +    + ++   V   
Sbjct: 239 DSHRTFFYGLEGRFHEPDLRGRSLTPFGTLGTCFQAEMGHGDRSLVPLGEKQAASSVTVR 298

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      N+L  L  +S+      +  +        E    R       G  TLI + YN
Sbjct: 299 LPLPGEHNVLDALAALSVGVLLNVSLEEGCRGLAAMELSRMRLELQPGPGGSTLISDVYN 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM    + L  +   G    +A+LG+M E+G+  ++ H ++ + ++   IS +   
Sbjct: 359 ANPTSM---KASLQVLKERGGESTLAILGEMYELGQSCRAGHYEVGQTVADLGISELITV 415

Query: 408 GFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRL 460
           G     +             +H     +G     +     L  G  V++K+S       +
Sbjct: 416 GPLAEEIARGALEKGLSPQRIHSFPEREGAIKKARELLAGLNQGTWVLIKASRGMKMEEV 475

Query: 461 INLLLEE 467
              L ++
Sbjct: 476 TRALRKD 482


>gi|91228510|ref|ZP_01262432.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
 gi|91187944|gb|EAS74254.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           alginolyticus 12G01]
          Length = 454

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 202/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +    +G   G   +  ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIADITRGERFGD--ELLIDAVSTDTRTIERGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V   +      +++P   V D   AL + A       K   +AITGS GKT
Sbjct: 58  VDAGAGALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +          
Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKWDEVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +ADF        +            S + +   +G     N+   +
Sbjct: 233 DKKVIT--FSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +  +          R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G+R  +LG+M E+GE S + H  + E  +     HV   G     + D    
Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISDL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|77414683|ref|ZP_00790817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
 gi|77159261|gb|EAO70438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 515]
          Length = 455

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + +   + +       +  I  DSR+I+  + F  +KG   DGH+FI  A   
Sbjct: 3   LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 62  GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A    + 
Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D +L+  +   E+  +  +      ++     G + A N ++   + 
Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I
Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +   
Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V++       +  D L   ++ +L + D +++K SNS    +++++L 
Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453


>gi|40854|emb|CAA38863.1| UDP-MurNac-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli]
 gi|42048|emb|CAA33473.1| UDP-MurNAC-pentapeptide presynthetase (AA -20 to 432) [Escherichia
           coli K-12]
          Length = 452

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 135/468 (28%), Positives = 214/468 (45%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               AG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGAAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPERALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++  + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|167035507|ref|YP_001670738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
 gi|166861995|gb|ABZ00403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida GB-1]
          Length = 455

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 209/464 (45%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L  A+ G  IG        G+SIDSRS+   + F A+ GP +DGHD++   
Sbjct: 1   MLKPLSLSQLTTALSGRQIG--ADATFTGVSIDSRSVGAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++      + +P   V D   AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVEREVA----DVDLPQLLVADCRLALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G E+I  AK EI EGL + G   LN DD  F +  A++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPEKIVEAKGEILEGLGEGGIAILNLDDKAFAIWSARAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  + +        +        +        ++   G++++V  + +G H   N L   
Sbjct: 235 SHKVVSFARSNPKADFHATDIG-RDARGCPSFKLHGAGETVDVQLNVLGEHNVSNALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   ++     L+   P +GR       +      +ID+SYNANP+SM AAI +L
Sbjct: 294 AAAHAVGLSLNGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPSSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIDAVSAEHASDTTILIKGSRSAAMENVVAAL 447


>gi|315281535|ref|ZP_07870143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
 gi|313614822|gb|EFR88358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria marthii FSL S4-120]
          Length = 470

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 208/464 (44%), Gaps = 16/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       D+         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKDV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNIDGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFVTNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + +    AL           R           +++++YN++P ++K  +     + 
Sbjct: 309 EIGIEGEKIQSALKNME---RSKSRLEWITTNSGARILNDAYNSSPTALKTVLKTFMHMD 365

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421
            +G+ ++  VL DM E+G+LS   H + AEVL    I+ ++L G  + A     +A    
Sbjct: 366 SNGK-QKYLVLADMLELGDLSTKLHQESAEVLENDTIAKIFLYGDAMKAFGAVAEAKIGQ 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + + +T + L + + S +   + ++VK S   G   ++  L+
Sbjct: 425 GKLQHFDTKESLEMALLSEITGNEWILVKGSYGMGLKDVVENLI 468


>gi|168333723|ref|ZP_02691976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Epulopiscium sp. 'N.t. morphotype B']
          Length = 458

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 211/470 (44%), Gaps = 24/470 (5%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  +L+Q   G  +         +  I  DSR  +     F  + G  +DGHD+I     
Sbjct: 4   SIQELVQETGGICLNSEDSGNTVIEEIFTDSRQKVNKG-LFVPLIGEKFDGHDYIDDVKA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   + +    +      +    V+D   AL  +A     +    IIAITGSVGKTTT
Sbjct: 63  MGALATLTSKKNDSVH--QDLITIAVEDTQKALLDVARYYSSKVDRPIIAITGSVGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L +  K +  +G+YNN IGVP T+  +  D    + E+GM+H GE+  LT +V
Sbjct: 121 KEMVAAVLETTLKVHKTVGNYNNEIGVPKTMFALSEDDQVSVIEMGMNHFGELSRLTSVV 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P  AVIT I  AH+ +    E I  AK EI EGL+  GT+ +N D+             
Sbjct: 181 KPDFAVITNIGTAHIEHLESREGILKAKLEILEGLKPEGTVIINGDEPLL-------MGK 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 +FG     D+ +         +   V       ++     G HMA N L+ + I
Sbjct: 234 KQDNWITFGFDPRLDYCVSNVVTYGVFTEAVVYTPNSVFKIKIPSPGVHMALNALIAIII 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D  IK ++ +       K      N G FT+ID++YNAN  SM AA+ VL  
Sbjct: 294 AEKLEIPRDKIIKGIANYK----SEKMRMNITNVGNFTVIDDTYNANYDSMVAAMKVLGN 349

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
                    IA+LGD+ E+G+ S+S H +L E ++   I+ V+  G     + DA+    
Sbjct: 350 YLTKNRK--IAILGDIFELGKYSESIHRNLGEYIASSRINCVFTIGDAAAYITDAIINSP 407

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +++   + +  +         +  GD+V+VK+S       ++  + ++
Sbjct: 408 NNKNVTSKHFKNKELFIKEWSQYINAGDIVLVKASRGMHLEEVVKAMRKD 457


>gi|315223224|ref|ZP_07865085.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
 gi|315187656|gb|EFU21410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus anginosus F0211]
          Length = 456

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 212/473 (44%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF+++   ++    +   P      +  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTFYEVASVLKAKNDVHQFPNCTFRNVEFDSRLIEEGDLFLPLKGAR-DGHDFIATAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   VDDVL AL +LA     + K  + A+TGS GKTTTK
Sbjct: 62  GAVATLSEKELD------DYPSILVDDVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AHL  F    EIA  K +I  G+++ G + +  D    + L ++ + + 
Sbjct: 176 PKVGIVTLIGEAHLEFFKSRHEIAKGKMQIANGMKEGGLLIVPADKIINDFLPSQQNVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D  +   K    +  +  +       +     G + A N ++   + 
Sbjct: 236 ----------FGPDEDIFLTKLEERKDSLTFETNFLDNAIDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D   KA +       R +  +         ++ + YNANP +M+  +   S I
Sbjct: 286 LKEGVTQDKIQKAFATLELTRNRTEWKKAKNGAD---ILSDVYNANPTAMRLILETFSTI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALP 419
             + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+  P
Sbjct: 343 PFNEKGRKLAVLADMKELGADSKQMHGAMITSLNPEILSEIFLYGEDMAALFAYAKEIFP 402

Query: 420 RSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++ +  +      L   ++ +L   D +++K SNS     L+  L  E
Sbjct: 403 PGKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEELENE 455


>gi|117928214|ref|YP_872765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648677|gb|ABK52779.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidothermus cellulolyticus 11B]
          Length = 473

 Score =  246 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 129/478 (26%), Positives = 199/478 (41%), Gaps = 22/478 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + Q   G       P+  V G +  DSR + P   F AI+G   DGH F  
Sbjct: 1   MIPLP-LRLVAQLAGGGLADVPDPERPVTGPVVADSRQVTPGGLFVAIRGARVDGHAFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117
            AV  GA  V+ +         + +P   VDD +  L +LA           +I ITGS 
Sbjct: 60  QAVSAGAVAVLADHP-------VGVPAIIVDDTVRGLGRLAHGYLDLLPDPVVIGITGSS 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++    L+ +  T A  GS N  +G+PLT+ R   D  F + E     +G I +
Sbjct: 113 GKTSTKDLGAQVLARLGPTVAPTGSLNTEVGLPLTVLRADRDTRFLVLEKSARGVGHIAY 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P I V+  +  AHL  F   E IA AK E+ E L   GT  LN DD     ++ 
Sbjct: 173 LCRIAPPRIGVVLNVGSAHLGEFGSREAIAQAKGELVEALPADGTAVLNADDPLVLGMRH 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A     + +FG S +AD +  +    +               +      + +     
Sbjct: 233 RTRA----RVVTFGTSADADVRATEIMTDATARPSFRLCFPDGAGLPVALQMHGVHHVSN 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +     A ++   +     R          T+I+++YNANP SM AA+
Sbjct: 289 ALAVATVAWVLGLGAEEIAAALREARPLSRWRMEVTTRDDGVTVINDAYNANPESMTAAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L+  +      RIAVLG M E+G  + + H ++ E  +   +  + + G     + D 
Sbjct: 349 TALAAATAAR---RIAVLGPMAELGPAAPAAHAEVGETAARVGVDWLIVVGADATPIADG 405

Query: 418 LPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             R       V            +  +L  GDVVV+K+S S G  ++   LL + PA+
Sbjct: 406 ARRGGLAAEAVTVVPDAAAATALLTPALRAGDVVVIKASRSYGLEQVAAALLAQTPAV 463


>gi|152968671|ref|YP_001333780.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238893066|ref|YP_002917800.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|330012011|ref|ZP_08307228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
 gi|150953520|gb|ABR75550.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545382|dbj|BAH61733.1| D-alanine:D-alanine-adding enzyme [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328534000|gb|EGF60652.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella sp. MS 92-3]
          Length = 452

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 21/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V+D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLA-----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A      +
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + N+DF     +  S  +   +Q    +++V+    G H   N L    +  
Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+      L+      GR    R   +     L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGADLAAVKAGLAQLQAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S   
Sbjct: 352 ----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      +   ++  L +  +  ++VK S S     ++  L E
Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|300854244|ref|YP_003779228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434359|gb|ADK14126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 464

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 200/467 (42%), Gaps = 15/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +F +++ A+ G  I          +S D+R I  ++ F A+KG  ++G+ +   A  KG
Sbjct: 4   MSFDEIVNAVSGQVIISGKYSGYRNVSTDTRKIEEKDIFIALKGERFNGNKYAAVASDKG 63

Query: 65  AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+              V  V D   AL  LA   + +    +I ITGS GKTTTK
Sbjct: 64  ASICIVDEVYFKKSEINECTSVIQVKDGNQALLDLAEFYKSKLSVKVIGITGSAGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++T  LS+  K +   G+ NN IG+P  + R+    D  + E+GM++ GEI  +    R
Sbjct: 124 DLITSVLSAKFKVFKTEGNLNNQIGLPHMIFRLNNSYDVAVLEMGMNNRGEIHSMAKAAR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT +  AH+ N    E I +AK EI +   K  T+ +N D+     LK       
Sbjct: 184 PDIAVITNVLRAHIGNLGTRENILAAKLEITDFFSKDNTLVINSDNDMLSNLKEDR---- 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              I   G  +N+D      +   +     +      ME             +   L + 
Sbjct: 240 -FNIRRVGLEENSDISAYDIEVKEDFISFNICENNVKMEERFKVNVPGKYNVLNSLLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                ++        + + +    +   C   +    +I++SYNANP SMKAAI VL   
Sbjct: 299 CGRILNMTYGEIREGLKNIETTAMRMEICKGKKFN--VINDSYNANPESMKAAIDVLKNF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PR 420
                  R+AVLG M E+G+ S   H ++ +      I  +   G +    K       +
Sbjct: 357 KSKR---RVAVLGTMGELGDESCRMHEEVGKYAGENGIDILIALGEYAEDFKRGFQVTNK 413

Query: 421 SIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +      +T      F ++  +V+GD V++K+S    F  +   L +
Sbjct: 414 NGKCISFDTYAETLEFLLKKCIVEGDTVLIKASRVMKFETIAEELKK 460


>gi|184201132|ref|YP_001855339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
 gi|183581362|dbj|BAG29833.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Kocuria rhizophila DC2201]
          Length = 492

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 134/482 (27%), Positives = 212/482 (43%), Gaps = 20/482 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T  +L +A+ G  +    P       ++ DSR +     F A  G   DGH F+ 
Sbjct: 1   MIPI-TAAELARAVSGRLVSVADPDGVSATSVTTDSREVTAGTLFVAKPGETTDGHAFVP 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAIT 114
            A   GA L +   +++   G+   P   V DV+ A+  LA       R     T++A+T
Sbjct: 60  QAAAAGAVLNLTEREVLDDTGAP-YPSVVVADVVQAMGALASHVLQRLRAAHPVTVVAVT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L    ++   T A   SYN  +GVPLT+     D +F + E+G +H+G 
Sbjct: 119 GSVGKTTTKDLLHGIFAAEGPTVAPRNSYNGEVGVPLTVFTAEQDTEFFVVEMGATHIGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           IR+L  +VRP +  +  +  AH   F G+E IA AK E+ E L   GT  LN DD+    
Sbjct: 179 IRYLCEMVRPDVGAVLCVGSAHAGEFGGVENIARAKGEMVECLAPEGTAVLNDDDARVRP 238

Query: 235 LKAKSHALGIKTIY--SFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           ++ ++ A  +            + D ++        ++                 H    
Sbjct: 239 MRERTTARVVSFGQGGRPHDPGHEDPRVWAEDVTTGADGCPSFTLHFPDGSAFPVHSRLI 298

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            +     +         A V     A  +         R          T+++++YNANP
Sbjct: 299 GVHHVTNLLAAASVAWAAGVAPERIAAGLEGTGARSRWRMERTERSDGVTVVNDAYNANP 358

Query: 351 ASMKAAISVLSQI----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            SMKAA+  L+Q+    + H   R IAV+G M E+G+ + S H DL ++L   NISHV  
Sbjct: 359 QSMKAALQTLAQLGRGDAEHPPRRTIAVIGGMHELGDETISAHADLGQLLVRLNISHVVA 418

Query: 407 SGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            G     +  A            +    +     +++ L  GD+V++KSSN+ G   L +
Sbjct: 419 VGDLARPVYTAATLEGSWGEEALWVPDAEAAEEHLRAVLRPGDIVLLKSSNAAGLNHLGD 478

Query: 463 LL 464
            +
Sbjct: 479 RI 480


>gi|148980584|ref|ZP_01816131.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
 gi|145961167|gb|EDK26483.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrionales bacterium
           SWAT-3]
          Length = 457

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 210/469 (44%), Gaps = 23/469 (4%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVNGQLIEAGKSNNSLINSVSTDTRTVEEGALFVALVGERFDAHDFCGQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVQRKL-----DLNITQVVVEDTKLALGQLSAWIHEQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R     D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +  K    A  
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWKD-VLADK 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S        F          ++  ++Q    +++V    IG H   N L    + 
Sbjct: 239 NVLTFSESDDTADYFATNIRINEQGEACFDMQTPQGAIDVELGIIGQHNVANALAAAALS 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +      L+     +GR +  + + N     LID+SYNA+  +M       +++
Sbjct: 299 IQFGATLAEIKSGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +      +
Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407

Query: 424 VHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  T + +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 408 GTHFATHEAMIAHIEQHLSLPENAPHTLLVKGANSAGMSKIAAALKENF 456


>gi|328471995|gb|EGF42872.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           parahaemolyticus 10329]
          Length = 454

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 200/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   + +   G   G      ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIAEITGGALFGN--DLTIDAVSTDTRTIDNGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GAG ++V   +      ++ P   V D   AL +LA       +   +AITGS GKT
Sbjct: 58  SEAGAGALLVEKRL-----DVNAPQVVVSDTKIALGELASWVHHSCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L          G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGNVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  IE +  AK EI++GL+  G   +N D +   L ++   
Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIEGVKQAKGEIYQGLQAGGIAIVNLDSNGDALWQSVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      +  ADF         E               +   +G     N+   +
Sbjct: 233 DKKVIT--FSHNNSQADFYASNVTMNEEGKASFTLHISSDSREIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +             R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALHMGATVEEIQFGLLNLNKVKGRVDVEQLSSTIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 GAFH----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKIISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             H  + ET   +  +I+  L     D   ++VK +N    + +   L E F
Sbjct: 404 -CHGIHFETHQEMIDYIKQHLDQTVSDQHTILVKGANGARMFEVAAALKEYF 454


>gi|330719373|ref|ZP_08313973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc fallax KCTC 3537]
          Length = 451

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 216/467 (46%), Gaps = 25/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + +     G      ++G++ DSR +   + F A+   + DGHD+I +A+  GA
Sbjct: 4   TLEKLAEVLNAPFQGKD-SVAISGVAFDSRHVKEGQLFIALVAEN-DGHDYIENALANGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V++           P   VDD L A+ KL    R +    ++AITGS GKTTTK+M
Sbjct: 62  HAVLVDSQH---QLKEDWPAVIVDDTLVAMQKLGQWYRHQVNPKVVAITGSNGKTTTKDM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                +   +T+    +YNN IGVP+TL  MP   +  I ELGM   G++  L+HLV P 
Sbjct: 119 AAEIANQQYRTFKTPENYNNEIGVPMTLLSMPESTEVLIVELGMDRPGQLTVLSHLVEPD 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+  F     IA AK EI  GL+  GT+         E L  +  +   +
Sbjct: 179 IAIITMIGEAHIEFFKTRRNIAKAKLEIINGLKAEGTLI----IPNDEPLLTQEISHIEQ 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG   +AD         + QS   +  Q  ++ +           N++  L  ++ 
Sbjct: 235 HVKTFGT-IDADVNATDISVENNQSQFNINQQKFAIPM-------LGRYNIMNALAAITA 286

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                     A       +    R          T+I + YN+NP ++KA ++ L  +S 
Sbjct: 287 GNLLHIDLKNAQKALLDFDLTKNRTEILHTTHGVTIISDVYNSNPTAVKAVLATL--VSR 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPR 420
             +G+R  VLGDM E+G+ +   H  LAE +   +I  V+L G  +       L+    +
Sbjct: 345 EVQGKRYVVLGDMLELGQQAGIMHAGLAESVQESHIDGVYLVGELMRKHLYPILQKHFDQ 404

Query: 421 SIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    Y++  +D L   +      GDV+++K+S+     R+++ L++
Sbjct: 405 TQLHQYAKDQLDDLVSDLNKLGQQGDVMLLKASHGIHLERVVDELMK 451


>gi|327438467|dbj|BAK14832.1| UDP-N-acetylmuramyl pentapeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 456

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 220/464 (47%), Gaps = 17/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   + + +        P+  V G+SID+R+I   + F   +G   +GH F+  A +KGA
Sbjct: 4   SLQQIAEWLTIE-NQSFPETIVTGVSIDTRTITKGDLFIPFRGEAVNGHRFVEQAFEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +        +P+  V+D   AL K+A   R   +AT I ITGS GKT++K++
Sbjct: 63  AASLWM--IDEPNPPAHLPLIFVEDPELALQKMAECYRNEHQATFIGITGSNGKTSSKDI 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L  ALS   K    IG++NN +G+P+T+ ++  D +  + E+GMS  GEI FLT+L RPH
Sbjct: 121 LAGALSPYFKVQKTIGNFNNQLGLPITILQLDEDTEVSVLEMGMSGFGEIEFLTNLARPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AH+ +    E IA AK EI +GL + G +F + D+   + L AK+  L   
Sbjct: 181 YAIITNIGEAHMQDLGSREGIAKAKFEIVKGLSEEGILFYDGDEPLLQNLVAKTPHLKT- 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG S+  +    + K  ++ S           +     +G H  +N L  + +   
Sbjct: 240 --QAFGFSQELNLAASQIKATAQGSS-FHVEGLIQGDFFISVLGEHQVKNTLSAMLVSKS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +   +AL      + R       +  G    I+++YNA P SM AAI  + Q + 
Sbjct: 297 LGLTDEQIREALKKVVLTDMRM----QLVPVGDLLFINDAYNAAPTSMHAAIQFVEQTTI 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             E     VLGDM E+G   +  H  +A  +    IS+V L G  +  L + L  +    
Sbjct: 353 RNEKW--LVLGDMLELGNEEKKMHEGIAGHIHPEEISYVCLYGPRMKWLYNKLQETFDAE 410

Query: 426 Y-SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   + +    +   IQS   +  +++VK S      ++I+ + 
Sbjct: 411 HLVYSENEYAPIIEKIQSHATNESILLVKGSRGMKLEKIIHSIE 454


>gi|34581457|ref|ZP_00142937.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
 gi|28262842|gb|EAA26346.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           26-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           sibirica 246]
          Length = 449

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L   +             N +  +S+ +     F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMFINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 KLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|157828767|ref|YP_001495009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933494|ref|YP_001650283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
 gi|13235393|emb|CAC33670.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           AJ293313;6-diaminopimelate--D-alanyl ligase [Rickettsia
           rickettsii]
 gi|157801248|gb|ABV76501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908581|gb|ABY72877.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 449

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L   +             N +  +S+ +     F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAVLGITI---SNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHQGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 NLSITDIHSFGRSAKTSAELMLYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|157964738|ref|YP_001499562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
 gi|157844514|gb|ABV85015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia massiliae MTU5]
          Length = 449

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 151/463 (32%), Positives = 242/463 (52%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N +  +S+ +   + F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAALGITI---SNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +     +    +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVE---INDKYKIILVDDCFEALQKIALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L ++L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVSLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 NLSITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGEM----INIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L + I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELIMHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|332991936|gb|AEF01991.1| D-alanine:D-alanine-adding enzyme [Alteromonas sp. SN2]
          Length = 471

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 127/466 (27%), Positives = 202/466 (43%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I G   G      V+ +S D+R+I     + A+KG +++GH+F   A   GA
Sbjct: 5   TLSWIASQIDGKLDGQ--DCEVSAVSTDTRTIDSGSVYLALKGENFNGHEFAKSAENAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +  +     ++SIPV  V+D   AL  L  A +       IAITGS GKTT KEM
Sbjct: 63  SAIIASEPV-----NVSIPVVYVEDTKLALGLLGAAVKREIAPKTIAITGSSGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L       A  G++NN IGVPLTL R+    ++ + ELG +HLGEI + T+LV+P 
Sbjct: 118 CAAILERRGSVLATNGNFNNDIGVPLTLLRLEHHHEYAVMELGANHLGEIAYTTNLVKPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A I   A +HL  F  +  +A AK+EIF+GL  +GT  +N D  F +  + K   L  K
Sbjct: 178 VATIVNAAASHLEGFGSLLGVARAKSEIFKGLGDSGTAIVNVDSQFADFWQGK---LKQK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +F   +  +                      +       +      N+   L   ++
Sbjct: 235 RVLTFSPMQKNEADFTAEDIIVGLDGCAAFQLCSNEGEAAIQLIIPGIHNVGNVLVAAAL 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 T           +    R           L+D++YNAN AS+ AAI  LS  S 
Sbjct: 295 TMQLGATLENVRDGLLAMKQVKGRLNVKTLGSQVRLLDDTYNANVASVNAAIDTLSTFS- 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIH 423
              G  + +LGDM E+GE ++ +H  +        I +++  G    +           +
Sbjct: 354 ---GINVLILGDMKELGEKARFYHEQVGNYALSKGIDYLYSFGVLSQSASAVFDAAPGKN 410

Query: 424 VHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLLE 466
             +   +D L   ++  L     D+ ++VK S S    R++  +  
Sbjct: 411 GEHFTDIDSLVSALEQDLQVEQQDISILVKGSRSSRMERVVEAIEA 456


>gi|229844911|ref|ZP_04465049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812292|gb|EEP47983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 6P18H1]
          Length = 457

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  VV+  +      S+SIP   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGAVAVVIQQE----NSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +S +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAASSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDVWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSSQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI  + DM E+GE S + H ++ + +   N+  V   G     + D
Sbjct: 346 IDVLKSYDA----FRILCVADMKELGENSLAIHREVGQYVKSSNLDLVCSYGNESAVISD 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+         + +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKVDMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|269967389|ref|ZP_06181449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
 gi|269827977|gb|EEZ82251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           alginolyticus 40B]
          Length = 454

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 201/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +    +G   G      ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIADITRGERFGD--DLLIDAVSTDTRTIDRGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V   +      +++P   V D   AL + A       K   +AITGS GKT
Sbjct: 58  VDAGAGALLVEKRL-----DVNVPQIVVSDTKLALGEFASWVHQACKTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +          
Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGIAIVNLDSNGEAKWDEVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +ADF        +            S + +   +G     N+   +
Sbjct: 233 DKKVIT--FSQSNTDADFFASNIVLNAAGEASFDLHIAASSQEIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +  +          R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G+R  +LG+M E+GE S + H  + E  +     HV   G     + D    
Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISDL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|116750886|ref|YP_847573.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699950|gb|ABK19138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 463

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 208/463 (44%), Gaps = 12/463 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT   ++ A++G  +   P   V+ IS D+RS+   + F A+ G  +DGHDFI  AV+KG
Sbjct: 3   WTVAQIVDAVRGRLMAGDPALPVDAISTDTRSLRRSDCFLALAGERFDGHDFISAAVEKG 62

Query: 65  AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV +     ++ + S+ V  VDD L AL +LA   R R    +  ITGS GKT+TK
Sbjct: 63  AAVVVVASGRGEGAVRAGSVAVVEVDDTLYALGELARTHRARYSIPVAGITGSNGKTSTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L          G+ NN IGVPLTL  M    +  + E+G++  GE+  L  +  
Sbjct: 123 ELLAAILEHRHGILKNRGNLNNQIGVPLTLLTMDPTHEAAVIEMGINVPGEMARLVEIAG 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +IT I PAHL     ++ I   K  +++ L+  G   +N DD        +  A  
Sbjct: 183 PTLGLITNIQPAHLEGLGSLDGILKEKGRLWDALDAEGIAVVNLDDQRLRAYSKRLAAR- 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S    +     + + +     +   + L  +++ VV   +G H  +N L      
Sbjct: 242 -TVTCSVRDPEAGVRVVGEIESDEHSTRFRMVLGTETVPVVLSAVGIHYVRNALAAAAAA 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    +     L+ + P   R +            LID++YNANP SM AA+      
Sbjct: 301 WAMGEPGEAISAGLAAYRPVGQRMQIRHMEDG---RVLIDDTYNANPESMLAAVRAALA- 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                   IAVLG+M E+G  S + H +L   +    +S +   G     + +    +  
Sbjct: 357 -VCRGKPCIAVLGEMRELGADSAALHRELGRRIGAMGLSGLITLGELAARIGEGAVEAGM 415

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                 ++++ D +  +++   +D   ++VK S      R++ 
Sbjct: 416 KPAACRHAKSHDQVVEWLRERKIDASWILVKGSRGMTMERVVE 458


>gi|254415234|ref|ZP_05028996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
 gi|196178040|gb|EDX73042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Microcoleus chthonoplastes PCC 7420]
          Length = 466

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 203/471 (43%), Gaps = 27/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    +    ++ +    + +     VNG   I+ D+R++ P + F A++G  +DGHD+ 
Sbjct: 1   MPCQLSLTQFIEVLAATPVNLSVPMTVNGVYGITTDTRNLEPGQIFLALRGETFDGHDYA 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A++KGA  V+ N D    +    IP   VDD L A  +LA   R +    +IA+TGS 
Sbjct: 61  EVAIKKGAIAVIANRDQGYHL--QDIPQLQVDDTLQAYQQLARWWRDQFDIPVIAVTGSA 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   LS+         +YNN IGVP TL  +  + D+ + E+ M   G+I  
Sbjct: 119 GKTTTKELIAAVLSTQGNILKTQANYNNEIGVPKTLLELDSNHDYAVIEMAMRGSGQIAL 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP I VIT +  AH+      + IA AK E+   +  T    LN+D+       A
Sbjct: 179 LTQIARPTIGVITNVGTAHIGLLGSEDAIAKAKCELLAQMPDTSMAILNHDNQRLMDTAA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   T    G                 +     +L    +       G H A N L
Sbjct: 239 TVWQGETLTFGLNGGD------------VQGKLIDLFRLMVDGITFPLPLPGEHNALNYL 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +   L  D     K LS     +  G R +         ++DE+YNA   +M   I
Sbjct: 287 AALAVAKHLQIDWTPLRKGLS----VQMSGGRSQRYELPNDIVILDETYNAGFEAM---I 339

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
           + L  ++     R IA+LG M E+G+ S+  H  + +      +  V+++       A+ 
Sbjct: 340 AALHLLAQTPGKRHIAILGSMKELGDHSEQLHQQVGQKAQQLQLDAVFITLKDREAEAIT 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +       ++E  D L   +   +  GD ++ K+S S G  R+++   E
Sbjct: 400 RGISALPSEGFAED-DALVQHLTEFVQPGDRLLFKASRSVGLDRVLHQFRE 449


>gi|226941973|ref|YP_002797047.1| MurF [Laribacter hongkongensis HLHK9]
 gi|226716900|gb|ACO76038.1| MurF [Laribacter hongkongensis HLHK9]
          Length = 452

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 132/466 (28%), Positives = 203/466 (43%), Gaps = 23/466 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T H++ +A+     G         +  DSR+I   + F A+KG  +D HDF+   + +
Sbjct: 1   MLTLHEVAEALFAVRQGD--NTGFTRVVTDSRAIRAGDLFVALKGERFDAHDFVADVLAR 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV  D          P+  V D   AL +LA   R R    +  ITGS GKTT K
Sbjct: 59  GAAGAVVRCDFDLP----GAPLVKVADPRLALGQLAALWRRRFDLPLAGITGSNGKTTVK 114

Query: 124 EMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EML          +   A  G++NN IG+PLTL  +       + E+GM+H GE+ +L+ 
Sbjct: 115 EMLRGMLAQWLGDEAVLATGGNFNNDIGMPLTLLGLRDTHRAAVIEMGMNHAGELTYLSG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP +A++     AH+ +F  +E IA AKAEIF GL   G   +N DD   +L  A + 
Sbjct: 175 LARPTVALVNNALRAHIGHFGSVEAIAQAKAEIFAGLAADGVAVINRDDPNRDLFVAAAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I            D      +  ++ S + +        V+    G HM  N L   
Sbjct: 235 GRRIVEFG----LAAGDVHALDAELLADGSRLTLVTPADRAAVMLPVPGQHMLANALAAC 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S +   +   +  L  F    GR    R        T+ID++YNANP S++AAI+VL
Sbjct: 291 AVASAMGVPLPAMVAGLQAFAGVPGRLAFRRAVSG---LTVIDDTYNANPDSVRAAIAVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       GRR  V GD+ E+GE + + H ++ +      +  +   G        A   
Sbjct: 348 A----ARSGRRWLVFGDLGELGEGAPALHAEIGQAAKAAGLDGLVTLGTVSREAAAAFGP 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  ++++ +   +   L   D V+VK S      R++  L  
Sbjct: 404 G--ALACDSVEAVLEALAP-LGAADSVLVKGSRFMKMERVVAALTA 446


>gi|227432575|ref|ZP_03914555.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351658|gb|EEJ41904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 442

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 214/472 (45%), Gaps = 36/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   + Q +   +   +    V G+S DSR +   + F A+   + DGHD++  A
Sbjct: 1   MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+           IP   V D L AL +L    R +    ++AITGS GKT
Sbjct: 56  LTKGATAVLVDDRH---QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M +  + S  KT+    ++NN IGVPLTL  MP D +  + ELGM  LG++  L+ 
Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRLGQLTTLSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA+IT I  AH+  F   E IA AK EI +GL+  GT+ + YD+         ++
Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLIPYDEPLL------TN 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG+                           + +     I      N++  L
Sbjct: 227 AQVKQNVQTFGQDIKDINSSSSKTI-------------FTYQNTRFAIPLLGRYNIMNAL 273

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +S           A       +    R           LI + YN+NP ++ A ++ L
Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLATL 333

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKD 416
             I       +  VLGDM E+GE +   H  LAE +   N+  V+L G  +      +  
Sbjct: 334 KIIPAT---HKYVVLGDMLELGEQAARLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390

Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S H+H  ET  +  L   +Q+   +GDV+++K+S+      ++N L++
Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442


>gi|77409094|ref|ZP_00785810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
 gi|77172311|gb|EAO75464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae COH1]
          Length = 455

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 210/471 (44%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + +   + +       +  I  DSR+I+  + F  +KG   DGH+FI  A   
Sbjct: 3   LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 62  GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHVLSEIAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A    + 
Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D +L+  +   E+  +  +      ++     G + A N ++   + 
Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I
Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +   
Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V++       +  D L   ++ +L + D +++K SNS    +++++L 
Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453


>gi|259501948|ref|ZP_05744850.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170125|gb|EEW54620.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 483

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 211/470 (44%), Gaps = 20/470 (4%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++ +AI     I       V  +S DSR +     F  ++G H DGH ++  A   
Sbjct: 27  MKLAEIAKAINAQNEIEQWKDIEVTSVSFDSRHLERGALFIPLQGAH-DGHQYVETAFTN 85

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +  +D    + +   PV  V D L AL +L      +    ++A+TGS GKTTTK
Sbjct: 86  GAAATLWASDH--ELTNNGHPVLVVTDPLKALQQLGKYYLHKINPIVVAVTGSNGKTTTK 143

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+         ++NN IGVP+TL  M  + +  + E+GM   G++ FL+ LV 
Sbjct: 144 DMIASILSTQLNVTKTYANFNNEIGVPVTLLNMEANTEVVVVEMGMDRFGQLDFLSKLVS 203

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+  F   + IA AK EI  GL++ G +  + D+     L  +  A  
Sbjct: 204 PDIAVITMIGEAHIEFFGTRDRIADAKMEIVNGLKEDGLLVYDGDEP----LLNERAAKV 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +    FG+    D           +S      +    +     +G +   N L  + + 
Sbjct: 260 AQQTSRFGRQLTDDLYATSVTAGP-RSISFKVNEWPDEQFTIPMVGEYNVNNALAAMVVA 318

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L         AL+     E    R     ++    ++ + YN+NP + K  +  L+ +
Sbjct: 319 KRLHISPAHIKTALAN---VELTENRAEWFKSKNGAQILSDVYNSNPTAAKQVLKTLAAM 375

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----- 418
                GRRIAVLGDM E+G+ +   H  LA  ++   I  V+L G  ++ L+  L     
Sbjct: 376 PVQ--GRRIAVLGDMLELGDAAPRLHASLATEINPAQIQEVYLIGTEMVHLQSKLLEQGY 433

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +IH +++  +  L   +++ L   D+V++K+S+     +++  + E 
Sbjct: 434 PATAIHYYHANQLGQLTATLEADLTASDMVLLKASHGLHLEQVLAAIKER 483


>gi|116617570|ref|YP_817941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|116096417|gb|ABJ61568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 442

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 214/472 (45%), Gaps = 36/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   + Q +   +   +    V G+S DSR +   + F A+   + DGHD++  A
Sbjct: 1   MN--YSVKKIGQILNATT--QIDSKIVTGVSFDSRKVKSGDLFVALVAEN-DGHDYVQQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+           IP   V D L AL +L    R +    ++AITGS GKT
Sbjct: 56  LTKGATAVLVDDRH---QIDSKIPAIIVSDTLLALQQLGEYRRHQINPKVVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M +  + S  KT+    ++NN IGVPLTL  MP D +  + ELGM   G++  L+ 
Sbjct: 113 TTKDMASAIMGSQYKTFKTPENFNNEIGVPLTLLTMPDDTEVLVVELGMDRPGQLTTLSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA+IT I  AH+  F   E IA AK EI +GL+  GT+ + YD+         ++
Sbjct: 173 LVSPDIAIITMIGEAHIEFFKTRENIAKAKLEITKGLKSQGTLLVPYDEPLL------TN 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG+                           + +     I      N++  L
Sbjct: 227 AQVKQNVQTFGQDIKDINSSSSKTI-------------FTYQNTRFAIPLLGRYNIMNAL 273

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +S           A       +    R           LI + YN+NP ++ A ++ L
Sbjct: 274 AAISAGILLHIELKNAAEALQHFDLTKNRTEQLTTSHGVNLISDVYNSNPTAVAAVLATL 333

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKD 416
             I       +  VLGDM E+GE + S H  LAE +   N+  V+L G  +      +  
Sbjct: 334 KIIPAT---HKYVVLGDMLELGEQAASLHACLAETVINANVDGVYLVGPLMNKYLYPILQ 390

Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S H+H  ET  +  L   +Q+   +GDV+++K+S+      ++N L++
Sbjct: 391 RRFDSAHLHQYETDQLAELIKDLQTLGENGDVILLKASHGIHLENVVNALVK 442


>gi|75675240|ref|YP_317661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           winogradskyi Nb-255]
 gi|74420110|gb|ABA04309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 476

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 197/466 (42%), Positives = 269/466 (57%), Gaps = 2/466 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A++    G +P   + GISIDSR++AP EA+FAIKG  +DGH F+  A++
Sbjct: 5   PLWTLDEMAAAMRAEGRGTLP-AAITGISIDSRTVAPGEAYFAIKGDVHDGHAFVGAALK 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA L VV         +L +P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+T
Sbjct: 64  AGAALAVVEAARRDQF-ALELPLLVVDDVLAALRDLARASRARLAAQVIAVTGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +  KT+  + S+NNH GVPL+L+R P D  F +FE+GM+H GEI  L  +V
Sbjct: 123 KEALRGVLGAQGKTHVSVASFNNHWGVPLSLSRCPADARFAVFEIGMNHAGEITPLVKMV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+A+ITT+ P HL  FSG+E IA AKAEIFEG+E  G + LN D++ F  L+  +  L
Sbjct: 183 RPHVAIITTVEPVHLEFFSGVEAIADAKAEIFEGVEPDGAVVLNRDNAQFARLQECARKL 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           GI  I +FG  + AD +L         S +  ++ G  +       G HMA N L  L  
Sbjct: 243 GIAKIVTFGADEKADARLLDLALHPAGSAVHAEILGSELTYKLGMPGRHMAMNSLAVLAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+  AD+  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA++VL +
Sbjct: 303 ASLAGADLALAGLALSQAQPAAGRGVRRALAVRGGEALLIDESYNANPASMAAALNVLGE 362

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +GRRIAVLGDM E+G  S   H DL   +   ++  ++  G  +  L +AL    
Sbjct: 363 AKVGTQGRRIAVLGDMLELGPRSADLHRDLTGAIDANDVDMIFCCGPLMRNLWNALSSGR 422

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              Y+E    L   + +++  GDV++VK S       ++  L   +
Sbjct: 423 RGGYAEDAAALESQVTAAIRSGDVIMVKGSLGSRMKVIVTALERRY 468


>gi|329115573|ref|ZP_08244295.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
 gi|326695001|gb|EGE46720.1| Putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acetobacter pomorum DM001]
          Length = 461

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 179/472 (37%), Positives = 252/472 (53%), Gaps = 13/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G  P   V GISID+RS+AP + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNAP-VSVTGISIDTRSLAPGDLFIALKGDNSDGHAHIATA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  V+ ++    + G     +  V D +  L KLA+AAR R K  ++A+TGSVGKT
Sbjct: 60  LEKGAAAVLAHS----AEGLTDPRILLVSDTMLGLQKLALAARARFKGKVVAVTGSVGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L  
Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREAAFCISEIGMNHPGEILPLAK 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P +AVITTI  AHL +   ++ IA+ KA I   L   G   +  D        A + 
Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAAEKASIITALPAGGIAIMPDDAHGTPFFTAAAV 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G +  +   L   +  ++ S  +V + GK+  V     G H+A+N ++ L
Sbjct: 236 KAQAVLWP-CGVNPQSTAHLSHLQTGADGSHFDVSILGKTFNVHLPAPGTHLARNAVVAL 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L ADV  A  AL+ F P +GRG   + A      TL+DESYNA+ AS++AA+ V+
Sbjct: 295 AACAALGADVAKAAAALAAFRPGKGRGALTKIAGG--AITLLDESYNASAASIRAALDVV 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I       RIAVLGDM E+GE S S H       +      V+  G ++  L DALP 
Sbjct: 353 RHIPATR---RIAVLGDMRELGEFSISEHQA-LAAPTASAADLVFCCGSYMKTLFDALPP 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           S    ++E+   L   + ++L  GD V+VK S       +I  L    PA++
Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459


>gi|160915857|ref|ZP_02078065.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
 gi|158432333|gb|EDP10622.1| hypothetical protein EUBDOL_01879 [Eubacterium dolichum DSM 3991]
          Length = 457

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 201/441 (45%), Gaps = 16/441 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+ IDSR +     +  I+G + +GH F+  A+  GA  V+             + V  V
Sbjct: 28  GVCIDSRKVVEGNLYIPIRGVNNNGHAFVKQAIDNGAKAVLWER--REPNPPKEVTVILV 85

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D   AL  LA A R +    +I ITGS GKT+TK+++   ++    T   +G++NN IG
Sbjct: 86  EDTTKALQDLARAYRNQLDMKVIGITGSNGKTSTKDIVASFMAQHYITQKTMGNFNNEIG 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL     +V+ G+ E+GM +LGE+ FLT+LVRP IA+IT +  AHL N   +E IA 
Sbjct: 146 VPLTLLSFSQNVEVGVVEMGMENLGELSFLTNLVRPDIAIITNVGTAHLENLGSMENIAR 205

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK EI EGL   G +  N D    +     +   G   + SFG  +  D+ + +  Q  E
Sbjct: 206 AKVEIAEGLRDGGMLIYNGDQPLLKDALRAAQLSGGIALRSFGTQQGNDYIVHEVCQQKE 265

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                +      ++++            +          A      +AL  F   E  G 
Sbjct: 266 GLSFYINDVACHLDMI-------GKHQAMNATAAWIAAKALQVCEAEALKGFESIEKTGL 318

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R           ++++SY +NP S  AA+  L +     +   +AVLGDM E+GE S   
Sbjct: 319 RNELVS-FDQALILNDSYKSNPQSALAALDTLEEFDIPYK---LAVLGDMLELGETSDQI 374

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD 445
           H  L + L  Y++  V   G        A    +H   + +    + L+ +++       
Sbjct: 375 HYQLGKDLKNYHLQEVLTIGDMARYTAQAAFNELHDVYIRHFVNKEELYSYLKPYGKKEC 434

Query: 446 VVVVKSSNSCGFYRLINLLLE 466
           ++++K S       L++ L++
Sbjct: 435 MILIKGSRGMKLDELVDWLVK 455


>gi|241762285|ref|ZP_04760366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|241373188|gb|EER62818.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
          Length = 463

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 165/469 (35%), Positives = 244/469 (52%), Gaps = 14/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G          V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGT---ASADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVDAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV       +  +  P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L   +   + +K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLLSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 +                  ++   +  +   ++ + +         +   N + 
Sbjct: 231 VQEKKAEIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEYWISNAMA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I 
Sbjct: 291 VLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIK 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L       + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++L
Sbjct: 351 ALENEP--KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEESL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              I     E  D     +   L   D+++VK SNS G   +++ L ++
Sbjct: 409 AGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSTVVSSLSKK 457


>gi|332637760|ref|ZP_08416623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanine ligase [Weissella cibaria
           KACC 11862]
          Length = 454

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 202/466 (43%), Gaps = 19/466 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  ++  AI    I       V   + DSR       F  +   + DGHD++  AV  G
Sbjct: 3   LTLQEMATAINAEIIN-AADVAVTSTTFDSRKAEAGSLFVPLVAAN-DGHDYVASAVANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A + +   D         +P   V D L A  +LAV    + +  ++AI+GS GKTTTK+
Sbjct: 61  ATVTLWQADH--PNVPTDVPTLVVADTLVAFQQLAVYYLKQVQPKVVAISGSNGKTTTKD 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +    +S  KT     ++NN IGVP T+  MP D +  + E GM   G++ FL+ +V P
Sbjct: 119 FVAAIGASTFKTVKTPANFNNEIGVPTTILSMPADTELLVIEFGMDRPGDLTFLSEMVHP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I  AH+  F   E IA  K EI  GL+  G +  N D+    LL+ ++     
Sbjct: 179 DIAVLTMIGEAHIEFFKTRERIADGKMEIIAGLQPNGVLVYNGDEP---LLRERAGQHAF 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG + + D            +  +      +  +   G          +++GI+ 
Sbjct: 236 LHTATFGLNPDNDLYASTIAMNPVGATFQTDKSAMTYHIPLTGRYNVSNALAAISVGILL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            ++ D      A +          R           ++ + YN+NP + K  +   ++  
Sbjct: 296 GISDDKIAQALAEAPIT-----ENRTEWLAGNFGGKILSDVYNSNPTAAKEVLHFFAETP 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----- 419
               GRRIAVLGDM E+GE   + H  LAE L    I HV+L G  + +L+D L      
Sbjct: 351 V--TGRRIAVLGDMLELGEAGPALHASLAEKLDPATIQHVYLVGDIMASLEDVLSVNYPA 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  +  +    L   +Q+ L   D V++K S+      ++  L+
Sbjct: 409 GTVKRYSKDDKATLIADLQADLTADDAVLLKGSHGIHLEEVVTALV 454


>gi|84394438|ref|ZP_00993154.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
 gi|84374937|gb|EAP91868.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio splendidus 12B01]
          Length = 457

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 128/469 (27%), Positives = 209/469 (44%), Gaps = 23/469 (4%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +   + G  I  G      +N +S D+R++     F AI G  +D HDF   AV+ 
Sbjct: 5   SLEQICSVVSGELIEAGNSNNNVINAVSTDTRTVEEGALFVAIVGDRFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGELSAWIHKQCDVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R     D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSESSDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +    +  A  
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAAGDTAIVNLESNGGDFW-NEVLADK 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S G  +   F          ++  ++Q    +  V    IG H   N L    + 
Sbjct: 239 TVLTFSEGSREADYFAENIEINDQGEACFDMQTPQGATAVELGIIGQHNVTNALAAAALS 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +D     L+     +GR +  + + N     LID+SYNA+  +M       +++
Sbjct: 299 IQFGATLDEIKSGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +      +
Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407

Query: 424 VHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  T   +   I+  L         ++VK +NS G  ++   L E F
Sbjct: 408 GTHFATHQAMIAHIEQHLRLPENASHTLLVKGANSAGMSKIAAALKENF 456


>gi|262044870|ref|ZP_06017913.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037839|gb|EEW39067.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 452

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 206/464 (44%), Gaps = 21/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDVAIDEVTTDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V+D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLA-----CDLPQVIVNDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A      +
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + N+DF     +  S  +   +Q    +++V+    G H   N L    +  
Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+      L+      GR    R   +     L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGADLAAVKAGLAQLQAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S   
Sbjct: 352 ----GFRTMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGALSADISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      +   ++  L +  +  ++VK S S     ++  L +
Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQD 448


>gi|219681591|ref|YP_002467977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471277|ref|ZP_05635276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624434|gb|ACL30589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|311086536|gb|ADP66617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 458

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F     K  
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +      L        R       + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
                +      L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|228989413|ref|ZP_04149402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
 gi|228770360|gb|EEM18935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus pseudomycoides DSM 12442]
          Length = 458

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 218/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q +             V G+SID+R I     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQVEQMVMGAGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL+  G    N D+          +    
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  ++        +  ++ ++      +      +G H   N L ++ I  
Sbjct: 243 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENVVFY-LPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R      +   T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKVYDNKEELVKNLQAIVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|67458761|ref|YP_246385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
 gi|67004294|gb|AAY61220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           felis URRWXCal2]
          Length = 449

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 155/463 (33%), Positives = 240/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L +A+   +I I      N +  +S+ +   + F  ++G   DGHD++L A
Sbjct: 1   MI--WNSETLSKAL---AITISNSINCNEVQFNSKDVKKGDLFIVLQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+  +  +       +  VDD    L K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIVSKQVEINDKD---KIILVDDCFETLQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L I L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKILLQYDSLVFASRGNFNNRLGLLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIFE   K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADINCYNKIVSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  +Y+FG S N   QL  ++   EQ  ++ ++  KS+E+    I  H A+N    L
Sbjct: 232 NLSINRVYNFGISHNTPAQLVLYENLGEQVHLKYKINNKSLEITIPFIPRHFAENYTAIL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P     K     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANIPP----NKGRGEIINIQNSRIICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H +L   +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEELVPYILDAGCSKVYLVGVNTKYIYDLLPP 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIVKKYFKNVDELITHITDLFESNELILIKGSRGIKLDKIVDY 447


>gi|328948456|ref|YP_004365793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
 gi|328448780|gb|AEB14496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Treponema
           succinifaciens DSM 2489]
          Length = 477

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 120/482 (24%), Positives = 205/482 (42%), Gaps = 33/482 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +  ++L+A+ G  +       +  +  DSR +     F  + G + DGH ++  A++K
Sbjct: 7   LLSLEEILEAVNGVHVLGNSPLCIKSVQTDSRLVEKNTLFVPLIGENQDGHSYVPQAIEK 66

Query: 64  GAGLVVVNTDMVASIG---------SLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           GA +V ++     + G         + S+    V++ L AL K A     +    I I +
Sbjct: 67  GASVVFISMKNFENNGNYFVELHEKNPSVIFIAVENTLEALQKSAARYVEKFPHLIKIGV 126

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L   LS   K  +  G+ N+  G+PL++  +  + + G+FE+GM+   
Sbjct: 127 TGSSGKTTTKEILVSILSQKYKVISNKGNLNSETGLPLSVFNIRAEHECGVFEMGMNREN 186

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  +++P  AV+T I  AH+      E IA  KA+IF      GT  +  DD F +
Sbjct: 187 EIGEIASVLKPRFAVVTNIGTAHIGILGSRENIAKEKAKIFSYFGGFGTGVIPVDDEFSD 246

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK +            GK           K   +      +     +E +    G +  
Sbjct: 247 FLKNEID----------GKVVFYGNDTDSVKYICDMGLKGTKFSIDGIETILPLPGKYNY 296

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           ++ L  + +  +L          +S   P  GR       L+   F ++ + YNANP SM
Sbjct: 297 KDALGAIALAQVLGLSSRQISDGISSLKPLSGRS----EILDGKNFLIMQDCYNANPDSM 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + AI  +  +    + ++I VLGDM E+G  S+S H     +    ++  V   G  + A
Sbjct: 353 EKAIEFIGSVKKEADAKKIFVLGDMLELGSDSKSAHEKTGLLAVNSDVDLVIFIGTEMKA 412

Query: 414 LKDALPRSIHVHYS-------ETMDGLFLFIQSSLVD--GDVVVVKSSNSCGFYRLINLL 464
                  S   +         ++M+     I+  L      ++ +K S   G  R+  +L
Sbjct: 413 AFKKAKNSSEKNIIFIAGNSQDSMERAASEIKKVLHGSLNSIIFIKGSRGMGLERISKIL 472

Query: 465 LE 466
           L 
Sbjct: 473 LA 474


>gi|15892834|ref|NP_360548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
 gi|20139035|sp|Q92H60|MURF_RICCN RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|15620019|gb|AAL03449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia conorii str. Malish 7]
          Length = 449

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 238/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L   +             N +  +S+ +     F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 NLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPA 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|15616838|ref|NP_240050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133476|sp|P57315|MURF_BUCAI RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|25528939|pir||H84955 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase (EC
           6.3.2.15) [imported] - Buchnera sp. (strain APS)
 gi|10038901|dbj|BAB12936.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 455

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F     K  
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHGTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +      L        R       + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
                +      L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|260220011|emb|CBA27122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Curvibacter putative symbiont of Hydra magnipapillata]
          Length = 470

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 200/470 (42%), Gaps = 12/470 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + T    L+ I G ++       ++ +  D+R+I P + F A++G  +D +D +  A
Sbjct: 1   MSAMMTLSHALKLIPGATLAGDGSTSIHRVHTDTRTIEPGDLFVALQGERFDANDMLHEA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  V+ +  + AS     +P   V++   AL  LA   R +    +IA+TGS GKT
Sbjct: 61  FAKGAAAVLCHAGLTASAYPAGLPRIEVNNSKLALATLATGWRAQFDLPVIAVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T  +M+   L +        A +G++NN IGVPLTL RM       + ELGM+H GEI  
Sbjct: 121 TVTQMIASILHAHAPDGAALATVGNFNNDIGVPLTLLRMRAQHRIAVVELGMNHPGEIAV 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      HL     IE +A     +   L +TGT     DD +  L + 
Sbjct: 181 LAAMAQPTVALVNNAQREHLEFMHTIEAVARENGSVLSSLPETGTAVFPADDDYAPLWRE 240

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              + G            ADF +R          +        +       G H  +N L
Sbjct: 241 --LSAGRVVATFARGDAGADFVVRSASWQDGAWQVVAGTPQGELRYRLAIAGRHNVKNSL 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                         T  + L  F P +GR +  +       FTL+D++YNANP SM+AAI
Sbjct: 299 AAAACALAAGVPAITVARGLEAFVPVKGRCRAMQVRQGALDFTLVDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+ +     G R+ V+GDM E+GE   +FH +         I HV   G         
Sbjct: 359 DVLADLP----GPRLLVMGDMGEVGEQGPAFHAEAGRYARDAGIEHVLALGDSSAHAVQE 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +P      + + +  L     +       V+VK S      R++  L   
Sbjct: 415 MPG---ARHFKDVADLNAAALALAPAVASVLVKGSRFMRMERVVEALSAR 461


>gi|146305953|ref|YP_001186418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
 gi|145574154|gb|ABP83686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina ymp]
          Length = 456

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 191/466 (40%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W   ++   +    IG       + +  DSR+IAP + F A+ GP +DGHD++   
Sbjct: 1   MLKPWLLSEIAADLSARLIGD--DVAFSAVGTDSRTIAPGQLFVALTGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++     +  +P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVA----NAPLPQLLVADTRLALGQLGALNRQAFTGPLAAVTGSSGKT 114

Query: 121 TTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           + KEML   L +       A  G+ NN +G PLTL  +  +   G+ ELG +H+GEI + 
Sbjct: 115 SVKEMLAAILRAGLNGAVLATRGNLNNDLGAPLTLLELAPEHRAGVIELGANHVGEIAYT 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L RP + +IT    AH+  F G E+I  AK EI EGL + G   LN DD  F   + +
Sbjct: 175 VSLTRPQVTIITNAGNAHVGEFGGPEKIVQAKGEILEGLAQDGVAVLNLDDKAFSTWQRR 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + SF                 E+      L+     V               
Sbjct: 235 ---AAGHQVLSFALRDTRADFHGSDLARDERGCQGFTLRSPVGSVRIQLNLLGEHNVANA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                +     +     A       +    R    L      +ID+SYNANP SM AA+ 
Sbjct: 292 LAACAAAHALGLPLVAMA-KGLENLQPVKGRAVAQLAPNGMRVIDDSYNANPVSMCAAVD 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGDM E+GE ++  H D+    +   +  ++  G  +    +  
Sbjct: 351 ILAGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAA-GKVDALYAVGPLMRFAVEEF 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +      L   +++    G  +++K S S    +++  L
Sbjct: 406 --GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAAL 448


>gi|193213701|ref|YP_001999654.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
 gi|193087178|gb|ACF12454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Chlorobaculum parvum NCIB 8327]
          Length = 477

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/442 (27%), Positives = 190/442 (42%), Gaps = 9/442 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + IDSR +     F A+ G   DGH F+      GA   VV+++  +  GS         
Sbjct: 32  VVIDSRKVVEGAVFVALPGERTDGHRFVGAVFANGASWAVVSSEWFSQHGSEHRGEGRRF 91

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEM+   LS+  K     G+YNN
Sbjct: 92  LVADDPVAAFQQLATAYRERFDIPVIGIGGSNGKTTTKEMVAAVLSTAFKVRVTQGNYNN 151

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL ++  D +  + E+G++H GE+ FL  + RP   ++T I   HL  F  ++ 
Sbjct: 152 HLGVPLTLFQLRRDTEMAVIEMGINHPGEMAFLASIARPTHGLLTNIGHEHLEFFGSLDG 211

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A A+AE+F+ LE +G       D         S +  I      G+      +     +
Sbjct: 212 VAKAEAELFDYLEVSGGTAFVNLDDHRLAAAGASLSRKICYGAVPGEPCAWWAEEVGSDR 271

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               ++      G    V  + IG H   N +    + +      +     L    P  G
Sbjct: 272 VGRIAFTLCSEAGIRQPVAMNFIGRHNVTNAVAAAAVGAHFGLAPEQIASGLGELMPASG 331

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +     L  G   +++++YNANP S++ A+  L+ +     GR++AV+GDM E+G  +
Sbjct: 332 WKRM--ELLEAGGVVVLNDTYNANPDSVRLALDTLASL--DCSGRKLAVIGDMLELGGNA 387

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +   +    I      G    +           H  ETMD L  F+   +  GD
Sbjct: 388 ALEHESIGNYIRQLPIDGCVTIGPLAGSCCQNAQERCLGH-FETMDDLDAFLGDYVRPGD 446

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            V+ K S           L++ 
Sbjct: 447 AVLFKGSRGMKLELAAEALVKR 468


>gi|148826253|ref|YP_001291006.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
 gi|148716413|gb|ABQ98623.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittEE]
          Length = 457

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLEQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G+  VVV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VAQGSVAVVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|300741261|ref|ZP_07071282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|311113336|ref|YP_003984558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380446|gb|EFJ77008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa M567]
 gi|310944830|gb|ADP41124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 535

 Score =  245 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 141/476 (29%), Positives = 205/476 (43%), Gaps = 22/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +  +++ A  G      G   +      + DSR + P   F A  G   DGH+F+
Sbjct: 1   MIKL-SAAEIITATGGSPLGLAGRESELGATFATTDSREVIPGTLFVAKPGEVTDGHNFV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113
             A  KGA L +V   +    G L  P   VDDV+ A+ K+A  A    R     T+I I
Sbjct: 60  SGAFDKGAVLALVERPVKDERGIL-YPSIQVDDVVLAMGKIAQYAVEKMRSLGDLTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L   LSS  +T A +GSYN  +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAILSSQGETIAPVGSYNGEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++V P   VI  +  AH   F G++ I   K E+ EG+   GT+ LN DD    
Sbjct: 179 NIEYLANIVHPDHGVILKVGTAHAGEFGGVDNIERTKGELAEGIRTGGTLILNADDERVA 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIG 289
            + A+  A    T +  G+    +         +  +               E+    IG
Sbjct: 239 RMSAR--ASAPVTYFGVGEKPQYERYTAALGLHTNDAGCPEFTLRLPDASEYEISSKLIG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N+L    +        D    AL+                +    T+I+++YNAN
Sbjct: 297 EHHVCNILAAATVAYNAGVPGDAIAHALNNTGALSKWRMARTDRADGV--TVINDAYNAN 354

Query: 350 PASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           P SM AA+  L+Q+       R  AVLG M E+GE S   H  L  ++   NIS +   G
Sbjct: 355 PESMTAALRTLAQLGRGAKPRRTWAVLGAMLELGEASLEEHDRLGRLVVRMNISKLIAVG 414

Query: 409 FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                  +A            + ET       +++ L  GD+V+ KSSN      L
Sbjct: 415 NEAKPAYNAAHLEGSWGNEATWVETPQEALNILRAELRSGDIVLFKSSNGAKLGSL 470


>gi|163732137|ref|ZP_02139583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
 gi|161394435|gb|EDQ18758.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter litoralis Och 149]
          Length = 476

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 167/454 (36%), Positives = 239/454 (52%), Gaps = 15/454 (3%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+    G+SID+R++   + F A+     DGHDF+  A+ KGA   +V+   V       
Sbjct: 19  PEWQATGVSIDTRTLQAGDIFVALSDVR-DGHDFVQQALDKGAAAALVSH--VPQGVPED 75

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P+  V DV  AL  L  A R R    ++A+TGSVGKT+TKEML   LS   KT+A + S
Sbjct: 76  APLLMVKDVQRALEDLGRAGRARVGGKVVAVTGSVGKTSTKEMLLAMLSDQGKTHASVAS 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNH GVPLTLARMP D +F + E+GM+H GEI  L  +  PH+A+ITT+A AHL  F  
Sbjct: 136 YNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVALITTVAAAHLEAFED 195

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           I  IA  KA IFEG+   G   LN D     +L AK+    +    +FG+    DF+L +
Sbjct: 196 ITGIAVEKASIFEGVVPNGVAILNADVETSAILMAKAQDCRL-RDITFGEHGY-DFKLMR 253

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                + + +  Q+    +    +  G H A N L  + +++ L  DV  A+ +L  + P
Sbjct: 254 ADLQGDTTVVRAQMGEVPILYKINSPGRHFAMNALGAVAVMAALRTDVALALGSLGRWTP 313

Query: 323 KEGRGKRYRCALNQGFFTLI----DESYNANPASMKAAI------SVLSQISPHGEGRRI 372
            +GRG+R R  L+     L     D+SYNANP SM AA+       V + I    +GRRI
Sbjct: 314 YKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAKVTNDIGRVSKGRRI 373

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           A LGDM E+G    + H  LA + +   I  +   G  + AL DALP      + ET + 
Sbjct: 374 AYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALPEPQRGTWFETAEE 433

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +++ +  GDVV+ K S S     +++ + +
Sbjct: 434 AATRVKTHIDSGDVVLAKGSLSMKLACVVDAIRK 467


>gi|229586938|ref|YP_002845439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
 gi|228021988|gb|ACP53696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Rickettsia africae ESF-5]
          Length = 449

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L   +             N +  +S+ +     F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAVLGITI---SNSISCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V+   I  H  +N    L
Sbjct: 232 KLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINKKVLDVMIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYINDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|325578825|ref|ZP_08148872.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159649|gb|EGC71781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 456

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 209/476 (43%), Gaps = 33/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +  + IG   Q  V  I+ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-QQLAQILNANLIG-DGQAVVENINTDTRKAVFNSLFFALKGEHFDAHQYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +VV      +  ++S P   V D   AL +LA   R +    I+A+TGS GKT
Sbjct: 59  VEQGATALVVQK----ANTNISTPQLVVSDTRLALGQLAKWLREKINPRIVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L         +    G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + THL +P  A++  +A AHL  F  IE +A AK EI+ GL   G   +N + ++ EL +
Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTPNGMAIINSEHNYIELWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  +  I+           D++    +     S   +     S+E+    +G H  +N 
Sbjct: 235 KEIGSHAIQ------YFNGGDYKAENVEHSPNGSTFMLVSPKGSIEINLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S++AA
Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI ++GDM E+GE S   H  + E      +  V   G     + +
Sbjct: 346 IDVLKGYDA----FRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGTESAVISE 401

Query: 417 ALPRSIHVHYSETMDG----LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
           A    +   +              I+  L +    VV+ K S S      I  L +
Sbjct: 402 A----VLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453


>gi|189347974|ref|YP_001944503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
 gi|189342121|gb|ACD91524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           limicola DSM 245]
          Length = 473

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 121/479 (25%), Positives = 192/479 (40%), Gaps = 14/479 (2%)

Query: 1   MNP---LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M     +     + + + G +   + +     + IDSR +     F A++G   DGH +I
Sbjct: 1   MKAVLDMLDLQGIGRIVVGDAADGLSRIVEPVVVIDSREVQEGGIFVALEGERTDGHRYI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIP-----VFGVDDVLGALNKLAVAARLRSKATIIA 112
                KGA L VV+    AS G             VDD +  L ++AVA R      + A
Sbjct: 61  DDVFAKGASLAVVSEAWYASHGQKDGAAGRRSYLIVDDTVRGLQQMAVAYRRSFSIPVFA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + GS GKTTTKE++   L    K +   G+ NNH+GVPLTL +M  D +  + E+G++H 
Sbjct: 121 VGGSNGKTTTKELIASVLGVGFKVHMSRGNRNNHLGVPLTLLQMKRDTEIAVVEMGINHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+  L  +  P   ++T I   HL     ++ +A+A+  ++E L+  G +     D  +
Sbjct: 181 GEMELLASIAMPTHGLLTNIGHEHLEFLHDLQGVAAAETRLYEYLDGHGGVCFVNADDPW 240

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            LL A S           G  +              +    + L      V     G H 
Sbjct: 241 -LLSAASKLERAVLYGLNGCGEGVPHAESAALDPFGRPSFMLCLSQACESVTLSLTGRHN 299

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L      S L   +    + L    P  G  +              +++YNANP S
Sbjct: 300 VVNALAAAAAGSYLGLSLREIKEGLENMIPATGWKRLEFQEAGGVMIV--NDTYNANPDS 357

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+ AI +L  +     GR+IAVLGDM E+G  ++  H      +    I  ++  G    
Sbjct: 358 MRLAIDLLCDL--QCSGRKIAVLGDMLELGSSAELEHEKTGRYIQQSGIDLLFTFGDLSK 415

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                   S    + E+ + L   +   +  GD V+ K S       + + L  E   +
Sbjct: 416 HFSTG-NASRSCGHFESREALASALGDVVASGDAVLFKGSRGMKLEEVADALNHERSTL 473


>gi|22536932|ref|NP_687783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|25010843|ref|NP_735238.1| hypothetical protein gbs0788 [Streptococcus agalactiae NEM316]
 gi|76788062|ref|YP_329515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77406746|ref|ZP_00783783.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
 gi|77412464|ref|ZP_00788767.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|22533784|gb|AAM99655.1|AE014226_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae 2603V/R]
 gi|23095222|emb|CAD46432.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563119|gb|ABA45703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus agalactiae A909]
 gi|77161482|gb|EAO72490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae CJB111]
 gi|77174651|gb|EAO77483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus agalactiae H36B]
          Length = 455

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 210/471 (44%), Gaps = 30/471 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + +   + +       +  I  DSR+I+  + F  +KG   DGH+FI  A   
Sbjct: 3   LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 62  GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +
Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A    + 
Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D +L+  +   E+  +  +      ++     G + A N ++   + 
Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I
Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +   
Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V++       +  D L   ++ +L + D +++K SNS    +++++L 
Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLKEKDQILLKGSNSMNLSKIVDILE 453


>gi|313675687|ref|YP_004053683.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Marivirga tractuosa
           DSM 4126]
 gi|312942385|gb|ADR21575.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Marivirga tractuosa
           DSM 4126]
          Length = 436

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 195/440 (44%), Gaps = 23/440 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  DSR +     FFA+KGP+++G+ F   A+++GA  VV++          +     
Sbjct: 15  SGICTDSRKLEKGNLFFALKGPNFNGNKFAQKALEEGAAAVVIDEIEYQQDQKNT---IL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL  LA   R +    I+ ITGS GKTT+KE++   L++  K +A  G+ NNHI
Sbjct: 72  VEDALEALQLLATHHREKLTIPILGITGSNGKTTSKELIHAVLATKYKVFATSGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +  D +  I E+G +H+GEI     + +P   +IT I  AH+  F G E I 
Sbjct: 132 GVPLSLLSIQKDHEIAIIEMGANHVGEIASYCQMAQPTHGLITNIGKAHIGEFGGFENII 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+F+             +     +  +   L              +       +  
Sbjct: 192 IGKSELFD---------FLKKNDGVPFINTQDAVLKNMEKRFSNAITFPNEGDDLQLKPE 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +            +  H +G     N+   L I       ++ AI+A   + P+  R 
Sbjct: 243 KGTAFLRYSTEGFSHIDTHLVGQFNYLNVAAALCIGKYFEVTMEKAIEATQEYMPENMRS 302

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +       +T++ ++YNANP SM+     +  +S       + +LGDM E+G+ ++ 
Sbjct: 303 QMIK----TDNYTILLDAYNANPDSMEL---AMKSLSAIENTESVVILGDMLELGDTAEL 355

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDV 446
            H  L E+     IS  +  G     ++ A  +     Y ET D L   + +  L  G  
Sbjct: 356 EHEKLGELAVDLGISKRYYCG---KQIQSASKKDNFGKYFETKDELIEHLTAKPLKKGST 412

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           +++K S       ++  L++
Sbjct: 413 ILIKGSRKNALEEIVPFLVK 432


>gi|258542966|ref|YP_003188399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634044|dbj|BAI00020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637104|dbj|BAI03073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640156|dbj|BAI06118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643213|dbj|BAI09168.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646268|dbj|BAI12216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649321|dbj|BAI15262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652307|dbj|BAI18241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655365|dbj|BAI21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 461

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 177/472 (37%), Positives = 252/472 (53%), Gaps = 13/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +L  A  G  +G      V GISID+R++   + F A+KG + DGH  I  A
Sbjct: 1   MSLLWTREELETATGGTFLGNT-SVSVTGISIDTRTLTHGDLFIALKGDNSDGHAHITTA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA  ++ ++    + G     +  V D +  L KLA AAR R K  ++A+TGSVGKT
Sbjct: 60  LEKGAAAILAHS----AEGFTDPRILLVADTMLGLQKLAQAARARFKGKVVAVTGSVGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML + L+    T+A   SYNNH GVPLTLAR+P +  F I E+GM+H GEI  L  
Sbjct: 116 TTKEMLRLCLAPSGLTHAAEASYNNHWGVPLTLARLPREASFCISEIGMNHPGEILPLAK 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P +AVITTI  AHL +   ++ IA  KA I   L K G   +  D    E   A++ 
Sbjct: 176 MVQPDVAVITTIGSAHLGHMGSLDAIAKEKASIITALPKGGIAIVPDDAHGTEFFTAEAE 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +++ G + ++   L      ++ S  +V +QGK+  V     G H+A+N +  L
Sbjct: 236 KAQA-VLWTCGVNPHSTAHLAHLHTGADGSHFDVSIQGKTFNVHLPAPGTHLARNAVAAL 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + L ADV  A  AL+ F P +GRG   +        TL+DESYNA+ AS++AA+ VL
Sbjct: 295 AACAALGADVAKAANALADFRPGKGRGALTQIVGG--AITLLDESYNASAASIRAALDVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             I       RIAVLGDM E+GE S S H       +      V+  G ++  L DALP 
Sbjct: 353 RHIPATR---RIAVLGDMRELGEFSISEHQA-LAAPAASAADLVFCCGSYMKTLFDALPP 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           S    ++E+   L   + ++L  GD V+VK S       +I  L    PA++
Sbjct: 409 SKQGAWAESAALLAPHVCAALRKGDAVLVKGSLGSRMRDIIAAL-NALPAVE 459


>gi|254230422|ref|ZP_04923802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262395263|ref|YP_003287117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
 gi|151937055|gb|EDN55933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           sp. Ex25]
 gi|262338857|gb|ACY52652.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           Ex25]
          Length = 454

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 202/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +    +G   G      ++ +S D+R+I     F A+ G  +D H+F   A
Sbjct: 1   MIKV-TLSQIANITRGELFGD--DLLIDAVSTDTRAIDNGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V   +      +++P   V D   AL +LA       +   +AITGS GKT
Sbjct: 58  VDAGAGALLVQKHL-----DVNVPQVVVSDTKMALGELASWVHQTCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL       +N D S     ++   
Sbjct: 173 LVKPDIALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGSIAIVNLDSSGETKWESVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      +  AD+        +            S + +   +G     N+   +
Sbjct: 233 DKEVIT--FSQSNSAADYYASNIVMNAAGEASFNLHIAASSQEIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +  +          R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALQMGATLEEVRAGLKHLNKVKGRVEVEALSEKIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 AAFP----GQRWLILGNMAELGEESLALHRQVGEYAAPQKFEHVLTYGADAKVISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CQGIHFETHQEMIEYIKQHLDQAVPENHTILVKGANGARMFEVAAALKEYY 454


>gi|73542667|ref|YP_297187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
 gi|72120080|gb|AAZ62343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Ralstonia eutropha JMP134]
          Length = 466

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 191/477 (40%), Gaps = 23/477 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + +    +    I G  +          +  DSR++ P + F A+KG  +D HDFI   V
Sbjct: 4   SKMTNLQEAAGWIAGARVLGDGTQAFARVHTDSRTVEPGDLFVALKGERFDAHDFIADVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+V+ D+ A      +P     D   AL +L    R +     +A+TGS GKTT
Sbjct: 64  ARGAVAVLVSRDVDA-----GVPAIVAPDTRIALGELGAGWRRQFTLPAVAVTGSNGKTT 118

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++           G+ NN IG+PLT+ R+       + ELGM+H GE  +L
Sbjct: 119 VKEMIAAIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHRLAVLELGMNHPGETVYL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             + +P +AV+T     H      +E +A   A     L   G      D+       A 
Sbjct: 179 AGIAQPTVAVVTNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDEESGGQHAAI 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A           +                  M+V+  G + EV    +G H  +N L 
Sbjct: 239 WRAAAGTRRVLSFGTAGEADVQATVALVDGVQVMQVRAPGHAFEVHLGLLGTHNVRNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      V    + L+ F   +GR    +     G   +ID++YNANP SM+AAI 
Sbjct: 299 ATACALAAGVQVPAIQQGLAAFKAVKGR---LQVKHTPGGTVVIDDTYNANPDSMRAAID 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+  +      R+ V+GDM E+G+   +FH ++        I  +W +G        A 
Sbjct: 356 VLAGFAA----PRLLVIGDMGEVGDQGPAFHTEIGGYAQALGIEALWATGELATHAVQAF 411

Query: 419 PRSIHVHYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                  + E    L   ++          G  V+VK S      R++  L+ + PA
Sbjct: 412 --GAQGRHFERAADLARALEEDAGGTVAKAG-AVLVKGSRFMRMERMVAALVADTPA 465


>gi|238650720|ref|YP_002916573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624818|gb|ACR47524.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rickettsia peacockii str. Rustic]
          Length = 449

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 149/463 (32%), Positives = 237/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L   +             N +  +S+ +     F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAVLGITI---SNSINCNEVQFNSKDVKKGNLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIISKRVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+I +IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNITMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 NLSITDIHSFGRSAKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|50955153|ref|YP_062441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
 gi|50951635|gb|AAT89336.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Leifsonia xyli
           subsp. xyli str. CTCB07]
          Length = 475

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 207/474 (43%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T  ++  A +G  +       P+  V+G+S  DSR + P   FFA  G   DGH 
Sbjct: 1   MIAL-TLSEIAAATRGRLLLEGTDATPRTVVDGLSTTDSREVVPGSIFFAKPGETTDGHL 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATII 111
           F+  A+  GA LVVV+ ++      ++ P   V+D + AL +LA       R      I+
Sbjct: 60  FVPQALDSGAALVVVDREL-----DVAGPQLVVEDTVVALGELAADVIARVRALGNLRIV 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK +L   L     T A   S+NN +G P+T+  +     + + E+  S 
Sbjct: 115 GITGSNGKTTTKNLLRAILEQSGPTIAPRASFNNEVGAPVTMLEVSERTQYLVAEMSASG 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  L  + RP I ++  +  AH   F GIE+  +AK E+   L ++    LN DD  
Sbjct: 175 IGEIARLVGMARPDIGIVLKVGLAHAGEFGGIEKTLAAKTEMVSDLLESDVAVLNLDDPR 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +  K+ A  +     FG    A  +    +  S  +   ++L G             
Sbjct: 235 VASMADKTAAHVLW----FGLDDRAAVRASDIRSTSRGTSFVLRLPGADGGDAASRPVRF 290

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYN 347
                   +  ++   A     I    +             R       G  T+I+++YN
Sbjct: 291 HVLGEHHVMNALAAAAAAHTLGIGIDRIVGGLEAVQRAERWRMEVLGGAGGVTVINDAYN 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P SM AA+  L+QI+  GE   IAVLG+M E+GE S   H  +  +     I  + + 
Sbjct: 351 ASPDSMSAALKTLAQIAGPGER-TIAVLGEMSELGEFSGEEHDRVGLLAVRLGIDQLVVV 409

Query: 408 GFHVLALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           G     +   A+          Y E+ D  +  ++ +L  GD V+VKSSNS G 
Sbjct: 410 GPPARRMHITAINEGSWDGESLYFESQDAAYDHLKETLRAGDTVLVKSSNSAGL 463


>gi|327479639|gb|AEA82949.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri DSM 4166]
          Length = 458

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 197/467 (42%), Gaps = 20/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L   + G  +G       + +S DSR+I P + F A+ GP +DGH ++   
Sbjct: 1   MLEAMRLSELQLPLSGRLVG--ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R   K  + AITGS GKT
Sbjct: 59  AAKGAVAALVAREVEGAP----LPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           + KEML   L S        A  G+ NN +G PLTL  +  +    + ELG S +G+I +
Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              LVRP +++IT    AH+  F G E+I  AK EI +GL  TGT  LN DD  + +   
Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKAYPIWAE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        I SFG                ++      L G    +              
Sbjct: 235 RVAGK---RIVSFGLDNPPADFSAGSIAYDQRGCPNFVLTGPLGNLRVQLNLLGRHNVAN 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                 +     +      ++     +    R    +      LID+SYNANPAS+ AAI
Sbjct: 292 ALAAAAAAHALGITAEAV-VAGLQGLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +    GR I VLGDM E+GE ++  H D+    +   +  ++  G  +     A
Sbjct: 351 DVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAA-GKVDTLYAVGPLMAHAVAA 405

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +     +      L   +++    G  +++K S S    ++++ L
Sbjct: 406 FGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|75487918|sp|Q9AKP1|MURF_RICMO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|13235407|emb|CAC33607.1| UDP-N-acetylmuramoylalanyl-D-glutamamyl-2,
           6-diaminopimelate--D-alanyl ligase [Rickettsia
           montanensis]
          Length = 449

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 150/463 (32%), Positives = 239/463 (51%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N +  +S+ +   + F A++G   DGHD++L A
Sbjct: 1   MI--WNSKTLSAALGITI---SNSINCNEVQFNSKDVKKGDLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+++  +  +       +  VDD   AL K+A+  R  SKA  I ITGSVGKT
Sbjct: 55  IDKGAAAVIISKQVEINDKD---KIILVDDCFEALQKMALYKRENSKAKFIVITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L + L      +A  G++NN +G+ + LA M  D ++ IFELGM+H GEIR L  
Sbjct: 112 STKEALKVLLQHDFLVFASRGNFNNKLGMLINLASMADDTEYAIFELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT I+ AHL  F+ +EEIA AK EIF    K     +N D + +  + +   
Sbjct: 172 ILKPNIAMITNISEAHLEFFNSLEEIAEAKCEIFANFSKNDIAVINADTNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  I+SFG+S     +L  ++   EQ +++ ++  K ++V    I  H  +N    L
Sbjct: 232 NLSITDIHSFGRSSKTSAELILYENLGEQVYLKYKINNKVLDVTIPFIPRHFTENYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANISPTKGRGE----IINIQNCRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+GE S+  H  L + +     S V+L G +   + D LP 
Sbjct: 348 KQVPAENK---TAIIGDMLELGENSKRLHEKLVQYILDAACSKVYLVGVNTKYIDDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       +++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELMTHITDLFEGNELILIKGSRGVKLDKIVDY 447


>gi|15602003|ref|NP_245075.1| hypothetical protein PM0138 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720353|gb|AAK02222.1| MurF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 460

 Score =  244 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 210/477 (44%), Gaps = 28/477 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L   +Q   +G      V  IS D+R       FFA+KG H+D H+++  A
Sbjct: 1   MLKLTT-KQLATILQAELVGEA-NVVVENISTDTRQRVASSLFFALKGEHFDAHNYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV      +   +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGANALVVER----ADTQISVPQLIVKDTRIALGELAKWVKQQVNPRTLAMTGSSGKT 114

Query: 121 TTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM    L S    ++     G++NN IGVPLTL R+     F + ELG +H GEI +
Sbjct: 115 TVKEMTASILQSAVGVEQVLFTQGNFNNDIGVPLTLLRLTEQHQFAVIELGANHQGEIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T LV+P++A++  +A AHL  F  +E +A+AK EI+ GL+  G   +N +  +      
Sbjct: 175 TTGLVQPNVALVNNVAAAHLEGFGSLEGVATAKGEIYRGLQPDGVAIINKEHDYRSTWAQ 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A  ++      +   ADF           S  ++        +    +G H  +N L
Sbjct: 235 DIGAHRVQYFAY--QDNTADFYADNVIFHEAGSTFDLCTPQGKTTIHLPYLGEHNVKNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + A +    + L V    +GR    +         L+D++YNAN  S+++AI
Sbjct: 293 AASALAMNVGATLAQIKQGLEVRTQVKGRLYPVQP---CDNLLLLDDTYNANVDSLQSAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL       +  RI V+GDM E+GE SQ  H  +AE      +  V+  G     +  A
Sbjct: 350 RVLQ----KYDAFRILVVGDMAELGENSQICHQQVAECAKAAKLERVYSFGSESAVISQA 405

Query: 418 LPRSIHVHYSETMD----GLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEEF 468
                   +          L   +   L +    V++ K S       +IN L E F
Sbjct: 406 ----CLGKHFTDKALLCRELTQLLSEKLKENQKIVLLAKGSRRMQMEDVINTLRENF 458


>gi|290512565|ref|ZP_06551931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
 gi|289774906|gb|EFD82908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Klebsiella
           sp. 1_1_55]
          Length = 452

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 206/464 (44%), Gaps = 21/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A      +
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + N+DF     +  S  +   +Q    +++V+    G H   N L    +  
Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+      L+      GR    R   +     L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  V+GDM E+G  S + H ++ EV     +  V   G     +  A   S   
Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEVAKAAGLDCVLSVGTLSADISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      +   ++  L +  +  ++VK S S     ++  L E
Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|288937142|ref|YP_003441201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
 gi|288891851|gb|ADC60169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Klebsiella
           variicola At-22]
          Length = 452

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 205/464 (44%), Gaps = 21/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A      +
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + N+DF     +  S  +   +Q    +++V+    G H   N L    +  
Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLQTPTGNVDVLLPLPGRHNIANALAATSLAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+      L+      GR    R   +     L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S   
Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      +   ++  L +  +  ++VK S S     ++  L E
Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|206577756|ref|YP_002240442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
 gi|206566814|gb|ACI08590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Klebsiella pneumoniae 342]
          Length = 452

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 204/464 (43%), Gaps = 21/464 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   L     G   G      ++ ++ D+R +     F A+KG  +D HDF   A   G
Sbjct: 4   FTLSQLAAIAHGERQG--SDIAIDEVTSDTRKVTAGCLFVALKGERFDAHDFAEQAKAAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           AG ++V+  +        +P   V D   A  +LA   R +    ++A+TGS GKT+ KE
Sbjct: 62  AGALLVSRPLA-----CDLPQVIVKDTRQAFGELAAWVRQQVPTRVVALTGSSGKTSVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    LS    T    G+ NN IGVP+TL R+  +  + + ELG +H GEI +   L RP
Sbjct: 117 MTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTKEHQYAVIELGANHQGEIAWTVSLTRP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +A AHL  F  +  +A AK EI+ GL + G   LN D++ +   +A      +
Sbjct: 177 EAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAILNADNNDWLNWQAVIGDRKV 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   + N+DF     +  S  +   +     +++V+    G H   N L    +  
Sbjct: 237 WR--FSPNAANSDFTATNVQITSHGTEFTLHTPTGNVDVLLPLPGRHNIANALAATSLAM 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + AD+      L+      GR    R   +     L+D+SYNAN  SM AA+ VLS++ 
Sbjct: 295 AVGADLAAVKAGLAQLKAVPGRLFPIRLTES---QLLLDDSYNANVGSMTAAVQVLSEMP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  V+GDM E+G  S + H ++ E      +  V   G     +  A   S   
Sbjct: 352 ----GFRAMVVGDMAELGAESAACHREVGEAAKAAGLDCVLSVGTLSADISRA---SGVG 404

Query: 425 HYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
            +      +   ++  L +  +  ++VK S S     ++  L E
Sbjct: 405 EHFNDKAAVVARLRELLAEHKIMTILVKGSRSAAMEEVVRALQE 448


>gi|219667709|ref|YP_002458144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
 gi|219537969|gb|ACL19708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfitobacterium hafniense DCB-2]
          Length = 453

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 184/464 (39%), Gaps = 16/464 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +++ A  G  +   P   V  +  DSR +     F  +KG   D H F+  A   G
Sbjct: 3   MTVREIVAACGGKLLCGDPDTMVTSVVTDSRKVTDGSLFVPLKGEKADAHTFLHAAFASG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    M             VD    AL ++A A R R    ++ ITGS GKTTTKE
Sbjct: 63  AAAALTQEHMRMEAEEA---WIAVDSTQLALQQIAAAYRQRFSIPVVGITGSAGKTTTKE 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M  +ALS+  K     G++N+ IG+PL + +   + +  + E+G+S  GE+  L  +  P
Sbjct: 120 MTALALSAGYKVMKTGGNHNSQIGLPLMMFQFSWEHEAAVVEMGISDFGEMARLAQVAEP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV+T +   H+        I   K  I +   +   +FLN DD     L+ K+     
Sbjct: 180 KYAVMTNLGITHIGQLKTQGNILREKLHITDRFTQGSVLFLNGDDPMLAGLRGKT----G 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                +G+    DF+        E +       G     V   +         +    V+
Sbjct: 236 YETVFYGRLPWCDFRAEGITVQEETTAFRCLAPGSESVEVTLPVLGMHHVLDALAALAVA 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A    +      ++           +ID+SYN++P + K+++SVL+   
Sbjct: 296 ERLGVPLKRAAAALRDYRPLAMRQQIYHVNEVA---VIDDSYNSSPGAAKSSLSVLAGFR 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---S 421
               GRR+AVL DM E+GE S+  H ++    +   +  +   G    A+ +        
Sbjct: 353 A---GRRVAVLADMLELGEYSRQAHFEVGVCAAENGVDILLTVGQEAKAVAEGARSVRAG 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           I     +        ++S L  GD V+VK S       ++  LL
Sbjct: 410 IDCRVLDNNYQAAEELKSFLSPGDAVLVKGSRGMHTEEIVRALL 453


>gi|84686331|ref|ZP_01014225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665514|gb|EAQ11990.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 166/452 (36%), Positives = 239/452 (52%), Gaps = 13/452 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+SID+R++ P + F A+     DGHDF+  A+ KGAG  +V+   +      + 
Sbjct: 20  DWTVSGVSIDTRTLQPGDLFVALADVR-DGHDFVKDALAKGAGAAMVSR--IPEGVRTTD 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V+DVL AL +L  A R R++A ++AITGSVGKT+TKEML   L    + +A   SY
Sbjct: 77  PLLVVEDVLPALERLGAAGRARTQARVVAITGSVGKTSTKEMLATILDRQARCHAAEASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP + DF + E+GM+H GEI  LT L RPH+A+ITT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPRETDFAVIEIGMNHPGEIAPLTRLARPHVALITTVAAVHLEAFENV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA  KA I+EGLE  G   L  +     +L A++       + +FG       QL   
Sbjct: 197 EGIAREKAAIYEGLEPAGVAILPGEIDTTTILLAEADKRAG-RVETFGLGAANTLQLTHL 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +  ++++   +  V     G H A N +  LG V  L  DV  A + L+ + P 
Sbjct: 256 DLTDTATVAQIEVGEVTHLVRLATPGRHFAMNAVAVLGAVRALGGDVTLAARDLTFWTPP 315

Query: 324 E---GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE------GRRIAV 374
                R       + +   TLID+++NANP SM AA+ VL+   P         GRR+AV
Sbjct: 316 AGRGTREFVQLDPVEREGVTLIDDAFNANPTSMAAALEVLAATKPAHGHGRIARGRRVAV 375

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           LGDM E+G    + H  LA++  L  I  V  +G  +  L  ALP      +SE  + L 
Sbjct: 376 LGDMLELGPDEAALHAGLADLDHLDAIDQVHCAGPLMHHLWAALPAEKQGRWSEKAEDLA 435

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               + +  GDV++VK S      R+++ + +
Sbjct: 436 AEAHNLIDAGDVLLVKGSKGSRVSRVVDAIRK 467


>gi|209527222|ref|ZP_03275734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
 gi|209492380|gb|EDZ92723.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrospira
           maxima CS-328]
          Length = 468

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 197/474 (41%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQA--IQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+ L+T   LLQ   + G           V GI+ D+R++   E F A++G  +DGHDF+
Sbjct: 1   MSELFTLTQLLQILTVNGEVSCDVSNNFPVIGITTDTRTLQRGEVFVALQGDRFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           + A+ KGA   VVN +   S      P+  V D L A   LA + R R    II +TGSV
Sbjct: 61  VAAIAKGALCAVVNREFAVSHPE--FPLIPVADTLRAYQTLARSWRDRFSIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  LS   K +   G+YNN IGVP TL  +  D DF + E+ M   GEI  
Sbjct: 119 GKTTTKELISAVLSHHGKVHKTFGNYNNEIGVPKTLLELRSDHDFAVIEMAMRGPGEIAD 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP + VI  +  AH+      + IA AK E+   +  T    LN+D+        
Sbjct: 179 LTRIARPTVGVIVNVGTAHIGRLGSEDAIARAKCELLAEMPDTSIAVLNHDNRRLMSTAT 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +    T    G     +    +  + +            +                L
Sbjct: 239 QVWSGTTITYGLEGGILQGELLGHETIRVAGIELPLPLPGSHNASNFL---------AAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L  ++      +     LS     +    R +         L+DE+YNA   S    +
Sbjct: 290 AVLRAIAGWETSAEELYAPLSTGLSLQMPQGRAKRYHLAQDILLLDETYNAGLEST---L 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L  ++     R IAVLG M E+GE S  FH  +       N+  +++          A
Sbjct: 347 AALKLLAETPGNRHIAVLGTMKELGERSLEFHQQVGAETQRLNLDGLFILADLAE--AQA 404

Query: 418 LPRSIHVHYSETMDGL---------FLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +     V     +  L            + + L  GD V+ K+SNS G  R++ 
Sbjct: 405 MAEGAMVIDFIDIQDLGSPQAHQLMIDKVLAFLKPGDRVLFKASNSVGMNRVVE 458


>gi|325663141|ref|ZP_08151591.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470595|gb|EGC73825.1| hypothetical protein HMPREF0490_02332 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 492

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 122/497 (24%), Positives = 196/497 (39%), Gaps = 50/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+G++IDSR       F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITTACGGTYYGEPSLLTREVSGVTIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +    +     S S P   V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCTLSEHPL-----SDSFPYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKVA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--- 239
           +P I V+T I   HL N    + +  AK E+F       +I LN DD     +       
Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRPGASIILNGDDDKLSEIATVHAAS 238

Query: 240 --------------------------HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWM 272
                                        G  T   FGK  +  F   + +    + +  
Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVGKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++        V+    G HM  N L    +   L   +D     +    P  GR      
Sbjct: 299 KIHAPAGDFTVIISIPGAHMVYNALAGTAVGIELGLTLDEIKTGIEALQPVAGRNHMIE- 357

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T++D+ YNANP SMKA++ VLS          +A+LGDM E+G      H ++
Sbjct: 358 ---TEHLTILDDCYNANPVSMKASLDVLSTALTRK----VAILGDMFELGTKELLLHREV 410

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   +  +   G    A+ D            + Y ET +     + S + + D +
Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S+   F  +++ L
Sbjct: 471 LVKASHGMAFEEIVHAL 487


>gi|323487024|ref|ZP_08092336.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
 gi|323399672|gb|EGA92058.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14163]
          Length = 455

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 208/455 (45%), Gaps = 13/455 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G     +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISDSDEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK        
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD----GCE 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 241 TSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F       K  +    +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDG----FKNRQQIYEKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
                IAVL DM E+GE +  FH ++   L    +  V   G     +   +   +    
Sbjct: 357 KRR--IAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414

Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              E  + +  +++  L +GD V+ K SNS     
Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGE 449


>gi|254476071|ref|ZP_05089457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
 gi|214030314|gb|EEB71149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Ruegeria
           sp. R11]
          Length = 470

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 177/471 (37%), Positives = 251/471 (53%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  +   A  G +IG      VNGISID+RSIA  + F A+K    DGHDF+  A
Sbjct: 1   MT-LWTAEETAAATGGVAIG---DWHVNGISIDTRSIAKGDLFVALKAAR-DGHDFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V+        S   P+  V+DV   L  L  A R R+ A +IA+TGSVGKT
Sbjct: 56  LEKGAGAALVSR--RPEGVSEDAPLLLVEDVQTGLEALGRAGRARTDARVIAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  
Sbjct: 114 STKEMLARMLSDQGRTHAAVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKA 237
             RPH+A++TT+AP HL  F GIE IA+ KA I +GLE  G   LN D       + +  
Sbjct: 174 QARPHVAMVTTVAPVHLEAFDGIEGIAAEKAAIMDGLEPGGVAVLNADIAEAPILQAVAG 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++           G    +   +    +  E         G+   +    +G H A N L
Sbjct: 234 RAAQDVQWFGTGQGPIAPSYRLVATTLRGDETEAEVTLPGGQGHRLQIQSLGAHFAMNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKA 355
             L  ++ L  D+  A+++LS++ P  GRG R   +    QG   L+D+SYNANP S+ A
Sbjct: 294 GALACLAALDLDLTKAVQSLSLWSPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAA 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++VL+      EGRRIA LGDM E+G    + H  LA++ ++ ++  V   G  + AL 
Sbjct: 354 ALAVLAATP--CEGRRIAYLGDMKELGPQEAALHAALADLPAMADLDAVHCIGPLMGALH 411

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ALP      +  +   +   +   +  GDVV+ K S S    ++++ + E
Sbjct: 412 AALPADKRRGHYASSADVLADLPGQIGAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|92116831|ref|YP_576560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
 gi|91799725|gb|ABE62100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nitrobacter hamburgensis X14]
          Length = 478

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 205/470 (43%), Positives = 269/470 (57%), Gaps = 3/470 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ PLWT   +  A++    G +P   + GISIDSR+I P + +FAIKG  +DGH F+  
Sbjct: 1   MSEPLWTLDVMAAAMRAERRGALP-AAITGISIDSRTIVPGDVYFAIKGDVHDGHAFVDA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA L V+         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGK
Sbjct: 60  ALKAGAALAVIEAAQRDKFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+TKE L   L +  KT+A + S+NNH GVPLTLAR P D  F IFE+GM+H GEI  L 
Sbjct: 119 TSTKEALRSVLGAQGKTHASVASFNNHWGVPLTLARCPEDARFAIFEIGMNHAGEISPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPHIA+ITT+ P HL  FSGIE IA AKAEIFEG+E  G + LN D++ F  L+ ++
Sbjct: 179 KMVRPHIAIITTVEPVHLEFFSGIEAIADAKAEIFEGVEPKGAVVLNRDNAQFARLQRRA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             LGI  I SFG  + AD +L         S +  ++ G  +       G HMA N L  
Sbjct: 239 KKLGIAKIVSFGADEKADARLLDVALHPACSAVHARILGHELTYKLAMPGRHMAMNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L   S+  AD+  A  ALS   P  GRG R+   +  G  TLIDESYNANPASM AA++V
Sbjct: 299 LAAASLAGADLALAGLALSQAQPAAGRGVRHVLMVPNGEATLIDESYNANPASMAAALTV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q     + RRIAVLGDM E+G      H  L E ++   I  V+  G  +  L DAL 
Sbjct: 359 LGQAGVGTQSRRIAVLGDMLELGSSGADLHRGLTEAINANAIDMVFCCGPLMRNLWDALS 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                 Y+E    L   + +++  GDV++VK S       ++  L + FP
Sbjct: 419 SGKRGGYAEGSVALESQVVAAIRAGDVIMVKGSLGSRMKVIVTALEKRFP 468


>gi|15604446|ref|NP_220964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanyl ligase (murF)
           [Rickettsia prowazekii str. Madrid E]
 gi|6225736|sp|O05953|MURF_RICPR RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3861140|emb|CAA15040.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-
           2,6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE (murF)
           [Rickettsia prowazekii]
 gi|292572218|gb|ADE30133.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           prowazekii Rp22]
          Length = 449

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 141/463 (30%), Positives = 228/463 (49%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N +  +S+ +   + F A++G   DGHD+I  A
Sbjct: 1   MI--WNSKTLSIALGIEI---SNSVNCNEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+  +  +       +  V++   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGATAVIVSKQVEINDKD---KIILVNNSFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L I L      +A  G++NN++G+ + LA M  D ++ IFELGM+H GEI  L  
Sbjct: 112 STKEALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHQGEISELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+I  I+ AHL  F  +EEIA AK EIF+   K     +N  ++ +  + +   
Sbjct: 172 ILKPNIAMINNISEAHLEFFHSLEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  IYSFG S  A  +L  +K   EQ  ++  +  K +++    I  H A N    L
Sbjct: 232 NLSITNIYSFGHSSKASAKLILYKTLGEQVHLQYYINNKFIDITIPFIPRHFANNYTGVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL       I+  + +       K     +N     +I + YNA+P SMKAA+  L
Sbjct: 292 LIIDILG----KDIEISAKYLADIALTKGRGKIINIQNSRVICDYYNASPQSMKAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    +++G+M E+G  SQ  H +L   +     + V+L G +   + D LP 
Sbjct: 348 KQVPADNK---TSIIGEMLELGWNSQRLHEELVPYILDAGCTKVYLVGAYTKYIYDLLPN 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   + + ++ L   I       +++++K S      ++++ 
Sbjct: 405 KISKKFFKNVEELITHITDLFEYSELILIKGSRGVKLDKIVDY 447


>gi|146281464|ref|YP_001171617.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
 gi|145569669|gb|ABP78775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           stutzeri A1501]
          Length = 458

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 20/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L   + G  +G       + +S DSR+I P + F A+ GP +DGH ++   
Sbjct: 1   MLEAMRLSELQLPLSGRLVG--ADASFSAVSTDSRAIQPGQLFIALTGPRFDGHAYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R   K  + AITGS GKT
Sbjct: 59  AAKGAVAALVAREVEGAP----LPQLVVADTRLALGRLGALNREAFKGPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           + KEML   L S        A  G+ NN +G PLTL  +  +    + ELG S +G+I +
Sbjct: 115 SVKEMLASILRSAHGHDAVLATRGNLNNDLGAPLTLLELSAEHRSAVIELGASRVGDIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              LVRP +++IT    AH+  F G E+I  AK EI +GL  TGT  LN DD    +   
Sbjct: 175 TVSLVRPDVSLITNAGTAHVGEFGGPEKIVQAKGEILDGLSATGTAVLNRDDKACPIWAE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        I SFG                ++      L G    +              
Sbjct: 235 RVAGK---RIVSFGLDNPLADFSAGSIAYDQRGCPNFVLTGPLGSLRVQLNLLGRHNVAN 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                 +     +      ++     +    R    +      LID+SYNANPAS+ AAI
Sbjct: 292 ALAAAAAAHALGITAEAV-VAGLQGLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAI 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +    GR I VLGDM E+GE ++  H D+    +   +  ++  G  +     A
Sbjct: 351 DVLASFA----GRTILVLGDMGELGEWAEQGHRDVGAYAA-GKVDTLYAVGPLMAHAVAA 405

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +     +      L   +++    G  +++K S S    ++++ L
Sbjct: 406 FGQGAR--HFPDQASLIESLRAEQGSGTTILIKGSRSAAMDKVVDAL 450


>gi|251797878|ref|YP_003012609.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
 gi|247545504|gb|ACT02523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 124/461 (26%), Positives = 204/461 (44%), Gaps = 10/461 (2%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
               +    P   + G+S D+RSI P + F  + G ++DGH ++  A+Q+GA   +  T 
Sbjct: 2   CGARAYKGEP-VRIAGVSTDTRSIQPGQLFVPLVGENFDGHSYVAQALQQGAAAALWETK 60

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                     P+  V D L AL +LA + R      +I ITGS GKTTTK+M+   L + 
Sbjct: 61  RELPQELADAPLLFVRDTLKALQQLATSYREELYVRVIGITGSNGKTTTKDMVAAVLGTA 120

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K +   G+ NNHIG+PLT+ ++  + D  + E+GMS  GEI  LT++ RP +AVIT I 
Sbjct: 121 YKVHKTAGNLNNHIGLPLTVLQLDEETDAAVLEMGMSGFGEIELLTNIARPDVAVITNIG 180

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL      E IA AK EI  GL   G +  N D+       A         + +FG  
Sbjct: 181 DAHLLQLGSREGIAKAKLEIAHGLHSGGILLYNGDEPLLAAELAGMSLPEGTQLQTFGLG 240

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           ++ D+     +  +  S   V+ +G+      + I      N+   L  ++I      + 
Sbjct: 241 ESNDWSAADIEVGAVSSAFAVKRKGQDTVSAPYTIPVPGQHNVSNALAAIAIGRRFGISE 300

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
               +     E  G R +         +++++YNANP +++AAI ++ Q+S         
Sbjct: 301 ENIRNGLIGLELTGMRIQPVKAHNGAMILNDAYNANPTAVRAAIDLVGQLSGFRRKW--I 358

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-------PRSIHVHY 426
           VLGDM E+G   +S H +    ++      V   G                  +   + +
Sbjct: 359 VLGDMRELGPEEESLHFETGAYITPDKADAVITFGPLSEHTSAGALSQFPAEAKGTAIVH 418

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    L  +++  +   D+V+VK S      +++  L   
Sbjct: 419 FDDKGKLGEWLREQVEPQDLVLVKGSRGVRMEQIVQTLEAR 459


>gi|331086744|ref|ZP_08335821.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409910|gb|EGG89345.1| hypothetical protein HMPREF0987_02124 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 492

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 196/497 (39%), Gaps = 50/497 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  ++  A  G   G        V+G++IDSR       F  IKG   DGH FI   ++
Sbjct: 4   MSLQEITTACGGTYYGEPSLLTREVSGVAIDSRKAGKDFLFVPIKGARVDGHSFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +    +  S      P   V     AL  +A   R      ++ I+GSVGKT+T
Sbjct: 64  QGALCTLSEHPLSDSS-----PYILVSSCAQALKDIAEHYRRALGIKVVGISGSVGKTST 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L          G++NN IG+PLT+ ++  + +  + E+G+S   E+  L  + 
Sbjct: 119 KEMIASILEQKYSVLKTAGNFNNEIGLPLTVFQIQKEHEVAVLEMGISDFQEMNRLAKIA 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS--- 239
           +P I V+T I   HL N    + +  AK E+F       +I LN DD     +       
Sbjct: 179 QPDICVLTNIGQCHLENLGDRDGVRKAKTEMFAHRRSGASIILNGDDDKLSEIATVHAAS 238

Query: 240 --------------------------HALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWM 272
                                        G  T   FGK  +  F   + +    + +  
Sbjct: 239 FSKQDGTTVVPYSDSTHDETSAASAVDKSGDTTPIFFGKDPHNAFYADEIQSLGLKGTSC 298

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           ++        V+    G HM  N L  + +   L   +D     +    P  GR      
Sbjct: 299 KIHTPAGDFTVIISIPGAHMVYNALAGIAVGIELGLTLDEIKTGIEALQPVAGRNHMIE- 357

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T++D+ YNANP SMKA++ VLS          +A+LGDM E+G      H ++
Sbjct: 358 ---TEHLTILDDCYNANPVSMKASLDVLSTALTRK----VAILGDMFELGTKELLLHREV 410

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   +  +   G    A+ D            + Y ET +     + S + + D +
Sbjct: 411 GTYAAEKKLDLLCCIGTLSKAMADGASEFSAQNDTKICYFETKNDFLNAVSSIIKEHDTI 470

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK+S+   F  +++ L
Sbjct: 471 LVKASHGMAFEEIVHAL 487


>gi|56551723|ref|YP_162562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|260752702|ref|YP_003225595.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|5834374|gb|AAD53940.1|AF179611_24 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|56543297|gb|AAV89451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|258552065|gb|ACV75011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 463

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 166/469 (35%), Positives = 245/469 (52%), Gaps = 14/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    + +A++G          V  ++ DSR I   + FFA+KG   DGH+++  A
Sbjct: 1   MKALWQSEAIARAVKGT---ASADFSVRNVAFDSREIQKGDLFFALKGTESDGHNYVEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA   VV       +  +  P   VDD   AL  LAVA+R R+   II ITGSVGKT
Sbjct: 58  FKRGAAGAVV-------MSPVPYPHILVDDSYQALKDLAVASRKRNHGKIIGITGSVGKT 110

Query: 121 TTKEML--TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           +TKE L   +   + +K +  + SYNNH+GVPL+LARMP +  FGIFE+GM+H GE+  L
Sbjct: 111 STKESLRLALERMAPEKVHYSLKSYNNHVGVPLSLARMPEESLFGIFEMGMNHAGELSDL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A+IT IAPAH + F+    IA AK+EIFEGL   G   + +D  + +LL AK
Sbjct: 171 TKLVQPDVALITAIAPAHAAFFADETAIAEAKSEIFEGLSSGGIAIIPHDSPYRDLLTAK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +     +                  ++   +  +   ++ + +         H   N + 
Sbjct: 231 AQEKKAEIRSFGFGEGATIRAQNIVREADGRVLVTASIRDRQLVFSMAMAAEHWISNAMA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +V  +  D+  A  AL      +GRG+R+   +  G   +IDESYNANPASM A I 
Sbjct: 291 VLAVVDAVGGDLTLASLALGDITGFQGRGQRFDIPVGDGSAIVIDESYNANPASMAATIK 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L       + RRI +LGDM E+G+ S ++H  LA+ LS   + HV L G  + AL+++L
Sbjct: 351 ALENEP--KDKRRIVLLGDMLELGQNSAAYHRALADPLSHAKVDHVLLVGQEMAALEESL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              I     E  D     +   L   D+++VK SNS G   +++ L ++
Sbjct: 409 AGKIACDRIEKADQAEALLDEILKADDILLVKGSNSLGLSAVVSSLSKK 457


>gi|311087116|gb|ADP67196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 458

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 123/469 (26%), Positives = 204/469 (43%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      +N I ID++ I P   F A+ G  +D H FI  A
Sbjct: 1   MISL-SLKKIALITNGTLYG--ADLLINEIVIDTKKIIPGCLFIALIGRKFDAHIFIHDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++K     V   ++        +P   V++   AL ++A   R ++KA I+AITGS GKT
Sbjct: 58  LKKKCAAFVTQKNIKPH-----VPYIIVENTSIALGQIAGWVRKKTKAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L     T + I + NN+IGVP+TL ++  +  +G+ ELG S  GEI + ++
Sbjct: 113 SVKEMTASILRKNGNTISTIDNLNNNIGVPMTLLQLKQEHKYGVIELGASKPGEIAYTSN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  AHL  F  +  ++ AK+EIF GL+   T+ +N D   F     K  
Sbjct: 173 ISQPDIILINNIHCAHLQGFKSLLGVSKAKSEIFSGLKPNSTVIINLDSHHFSQW-KKDI 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  K K ++F     K     +   +      + +    +GY    N L   
Sbjct: 232 KNSNILFFSIKKKKYSNFFCSNIKIHIHSTSFTMHTPCGKINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +      L        R       + +    LID++YN+N +SM +AI VL
Sbjct: 292 AFSFALKIPLKKIKIGLLDTPIVSKR---LESIILEPNKILIDDTYNSNVSSMISAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V GDM E+GE S  +H  +    +   I+ ++  G     +      
Sbjct: 349 ERMP----GYKILVTGDMAELGENSMMYHQMIGNTANSSAINKIFSIGDMSSEITKIFNN 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLEE 467
                +      L  ++++         ++VK S S    +++  L++E
Sbjct: 405 GK---HFLNKKKLSEYLKNVFLKKKKITILVKGSRSTKMEKVVEDLIKE 450


>gi|238927327|ref|ZP_04659087.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
 gi|238884609|gb|EEQ48247.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas flueggei ATCC 43531]
          Length = 468

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 127/471 (26%), Positives = 221/471 (46%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T+ ++  A       G V    V  I+ D+R +   + F A++G ++DG  F   
Sbjct: 1   MKNGLTWDEICAATDASVRRGGVAGDTVLPITTDTRKVEAGDLFVALRGENFDGTAFAAE 60

Query: 60  AVQKGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           A+++GA  V+V+    AS    + +    V   +D L A   +A A R++    ++AITG
Sbjct: 61  ALERGAAAVLVDQKTPASVLAALNAAHGGVLVAEDTLRAYQDIAHAWRMKFNIPVVAITG 120

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++    LS   K      +YNN +G+PLTL  +  +    + E+GM  +G+I
Sbjct: 121 SNGKTTTKDLTAAVLSGRGKVCRTAANYNNEVGLPLTLLSITPEDTAAVVEIGMRGMGQI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +  P I ++T +   H+     IE IA AKAE+   +   GT+ LN DD     +
Sbjct: 181 AALAPIAEPSIGIVTNVCEVHMELLGSIENIAKAKAELVTAIPAGGTVILNADDPRVAGM 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++   A     + ++G S  AD +    +  ++ S   V   G+  E      G H   N
Sbjct: 241 RS--SAADGVRVMTYGISAAADVRAEALQCMADGSRFMVTWGGERHEYAISLPGRHNVSN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L    +L        + L+    ++ R + ++       +TLI+++YNA+P+SM+A
Sbjct: 299 ALAALAAGFVLGMTPQEMQEGLTHLTAEKMRYEVHQVGA----WTLINDAYNASPSSMRA 354

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++   + + P   GRR+AVLGDM E+G  +++ H D+   ++    + V   G       
Sbjct: 355 SLETTAALYP---GRRVAVLGDMLELGTAAEAAHRDVGRRVAELGFAMVVTYGRQAQWTH 411

Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +      ++ +      +++  L+DGD V+ K S      ++I  L
Sbjct: 412 ETAEAAGCPDCCHAASHADAAAYLRRHLMDGDTVLFKGSRGMRMEQIIAAL 462


>gi|170016722|ref|YP_001727641.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
 gi|169803579|gb|ACA82197.1| UDP-N-acetylmuramyl pentapeptide synthase [Leuconostoc citreum
           KM20]
          Length = 444

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 207/470 (44%), Gaps = 35/470 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  ++   +Q +S G      + G++ DSR +   + F A+   H DGH +I  A+  GA
Sbjct: 4   SLKNIASVLQANSQG---DADITGVAFDSRQVKIGDLFVALVSEH-DGHLYIQQALANGA 59

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+V+        +  IP   V D L AL +L    R      +IAITGS GKTTTK+M
Sbjct: 60  VAVLVDDQHA---ITPDIPAIIVPDTLLALQRLGQYRREMVNPKVIAITGSNGKTTTKDM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               LS+  KT+    +YNN IGVP+TL  MP D +  + ELGM   G++  L+HLV P 
Sbjct: 117 TAAILSTKFKTFKTPENYNNEIGVPMTLLSMPDDTEVLVVELGMDRPGQLTVLSHLVMPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AH+  F   + IA AK EI +GL+  G + + +D+        KS      
Sbjct: 177 IAIITMIGEAHIEFFQTRDNIARAKLEITQGLKSDGILLVPFDEPLLTQAAVKSDR---- 232

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                           +     +          +  +     +G +   N L  +    +
Sbjct: 233 ------------QYFGEKVSAIQALATVTTFTFEQQKFAIPVMGRYNVMNALAAISAGKL 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L+ D+  A  AL  F   +    R    +      LI + YNANP ++ A +S L  +  
Sbjct: 281 LSIDLKHAALALKNF---DLTKNRTERLVTSQGVVLISDVYNANPTAVAAVLSTLKSLPA 337

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
             +     VLGDM E+G  +   H +L   +   ++  V+L G           +     
Sbjct: 338 RRK---YVVLGDMLELGTQANHLHAELGPKILDTDVDGVYLVGSLFNQNTAPLLMSKMGV 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             +H++ ++ +  L   + +    GDV+++K+S+      ++  L  E P
Sbjct: 395 ERVHLYQTDQLKQLASDLLAISQPGDVILLKASHGIHLEEVVQQLTSEQP 444


>gi|71066606|ref|YP_265333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
 gi|71039591|gb|AAZ19899.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter arcticus 273-4]
          Length = 485

 Score =  244 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 132/447 (29%), Positives = 198/447 (44%), Gaps = 24/447 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             I+ D+R+I   + F A+ G ++DGHD+I  AV +GA   +V+  +     S  IP   
Sbjct: 56  TRIATDTRTIKTGDIFLALSGDNFDGHDYIDMAVSQGAIAAIVSRPI-----STDIPQLV 110

Query: 88  VDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           V+D   AL +LA   R + K  T+IAITGS GKTT KEML      +  T    G+ NN 
Sbjct: 111 VNDTRLALGQLASYRRQQHKDLTVIAITGSSGKTTCKEMLGSIFGRLAPTLITRGNLNND 170

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +GVP+ L  +     + I ELG +H+GEI + T +V+P +A I  I  AHL  F   E I
Sbjct: 171 LGVPMMLLELSDHHRYAILELGANHIGEIAYTTEIVQPDVACILNIGTAHLGEFGSREGI 230

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              KAEI+  L  +    +   D F   L+  +       I       N D         
Sbjct: 231 CQTKAEIYHTLNDSQFAIVPDKDDFTNQLRRIAEKHTSHVIGF----GNTDVSASHLDVE 286

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E+S  ++ +  +  ++     G H   N L        L  D++  +  L    P +GR
Sbjct: 287 PERSEFKLHIGNQVHDINLPLAGEHNVNNALAAAACAHALNIDINDIVVGLENARPAKGR 346

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                     G   LID++YNANP S+       +++     G ++ VLGD+ E+G+ + 
Sbjct: 347 LNSQ----LLGMHRLIDDTYNANPHSV----RAAAKVLAAQTGTQVMVLGDIAELGDAAV 398

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD- 443
           S H  L   ++   I+ +   G +             I  H     D L  ++Q  L + 
Sbjct: 399 SEHQSLGRTIATTGINVLLCVGEYAPYTVAGAQEISDISAHAFTDKDSLLQYLQPYLQEP 458

Query: 444 ---GDVVVVKSSNSCGFYRLINLLLEE 467
                 V+ K S S     LIN L+EE
Sbjct: 459 QAQPCTVLFKGSRSMEMETLINALVEE 485


>gi|260773498|ref|ZP_05882414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612637|gb|EEX37840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 453

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 209/466 (44%), Gaps = 23/466 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +   +QG  +G      ++ +S D+R I P+  F A+ G  +D H F   A+  GA 
Sbjct: 6   LSTISHVVQGQLLG--ADSIISSVSTDTRRIEPEGLFIALVGERFDAHQFAQQAIDAGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V   +      + +    V +   AL KL      + +   IAITGS GKTT KEM+
Sbjct: 64  ALMVERAL-----DVDVAQIVVSNTKQALGKLGCWVHQQCQTPTIAITGSCGKTTVKEMV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+  +     G++NN IGVPLTL R     DF + ELG +H+GEI + T LV+P +
Sbjct: 119 ASILSAKGQVLYTAGNFNNDIGVPLTLLRSSQKDDFAVIELGANHIGEIAYTTQLVKPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +A AHL  F  ++ +  AK EI++GL    T  +N D    EL  ++        
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLAPGKTALVNLDSHGGELW-SQVLVDKHVK 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +S  +     F  +     + ++   +        V    +G H   N L    +   +
Sbjct: 238 TFSVNQQNADFFASQIALNQAGEASFILHTPQGEQPVTLGILGQHNVSNALAASALAMEM 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A ++     L+     +GR    +         LID+SYNA+  +MKAAI +L+  S  
Sbjct: 298 GASIEEVAVGLAQLSAVKGRVDVSQLT---PMIRLIDDSYNASVPAMKAAIELLASFS-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G R  +LG+M E+G  S + H  + E  + +   +V   G     +           +
Sbjct: 353 --GCRWLILGNMAELGTESLALHQQVGEHAAPFQFDYVLTYGEDARVISQ----QCQGQH 406

Query: 427 SETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
             T   +  FI+  L        V++VK +NS G  +++  L E+F
Sbjct: 407 FSTHQDMLTFIEQQLEVRASQSHVLLVKGANSSGMSKIVAALKEKF 452


>gi|282899479|ref|ZP_06307445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195636|gb|EFA70567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 451

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 200/468 (42%), Gaps = 29/468 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L   +    + I        + GI  D+R + P E F A+ G  +DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLVNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+     +     +PV  V + L A  +LA   R +    +I +TGSV
Sbjct: 61  EMAITRGAVAAIVD----YTYNYPDLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +  K +   G++NN IGVP TL  +    DF + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTRGKVHKTHGNFNNEIGVPKTLLELSQGDDFAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LTH+ +P+I VIT +  AH+      + IA AK E+   +       LNYD+        
Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNPLLMATAK 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +  + +    G                 +     +++   M +     G H   N L
Sbjct: 237 QVWSGEVISYGFSGGD------------IQGKLVDYQKVEVGGMTLPLPLAGVHNGSNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D       ++          R +         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGVDWKLLEAGIN----VTMPQGRSQSWKLPRDIMILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+Q     +   IAVLG M E+GE S   H  + E +   N+    V + G     + 
Sbjct: 341 ELLAQTPGRRK---IAVLGAMKELGERSTKLHQQVGETVKKLNLDGLLVLVDGPDAETIV 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            +  + I          L   +++ +  GD ++ K+++S G  +++  
Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLKTYVQPGDRLLFKAAHSVGLEKVVQQ 444


>gi|224368380|ref|YP_002602543.1| MurF [Desulfobacterium autotrophicum HRM2]
 gi|223691096|gb|ACN14379.1| MurF [Desulfobacterium autotrophicum HRM2]
          Length = 486

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 208/468 (44%), Gaps = 12/468 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W   D+ +A+       V +   +G+S DSR+I  Q+ F A++G  +DGH FI   V++G
Sbjct: 7   WRVADIAKALGQGPTHTVTEIVFSGVSTDSRTIGVQDLFVALEGERFDGHTFIADLVKRG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV               F VD+ L AL  LA   RLR+   ++AITGS GKT+T++
Sbjct: 67  VRGFVVKKGQKIPKDVPGCLFFSVDNTLTALGDLARFQRLRAGVRVVAITGSNGKTSTRK 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M          T    G+ NN IG+PLTL  + +D ++ + E+GM+H GEI  L  +  P
Sbjct: 127 MTGEIFGRKFNTLTTRGNLNNEIGLPLTLLGLSLDHEWAVVEMGMNHGGEIHRLGSIALP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT  +  HL     +E +A AKAE+   +   G+  LN DD  F +  A   A   
Sbjct: 187 DIGVITNTSHCHLEGLGTVEGVARAKAELLPHVRVHGSAVLNLDDPRFPIFSAAVRANTA 246

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ----LQGKSMEVVHHGIGYHMAQNMLMTL 300
                       +         +++              + EV  H     M  N L   
Sbjct: 247 IENIVCFSMDRLNMDCVGASAIADREEGMGFTLVSPSEGTREVFLHTPARFMVSNALAAA 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G        +D   + L  F P+ GR             T+ID++YNANP S+ AA+  L
Sbjct: 307 GAALAAGISMDVIKQGLEAFEPEPGRMH---LEPGFNHTTIIDDTYNANPGSVGAALETL 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALP 419
            +++ +G G  IAVLGDM E+G  ++ FH ++  + +   IS ++  G      +  A+ 
Sbjct: 364 ERVTQNGVG--IAVLGDMLELGPGTEQFHREMGALAAASGISRLYAHGPMADHVIHGAVK 421

Query: 420 RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +   T D +   + +   +   ++VK S      ++++ L 
Sbjct: 422 AGFPGSAAMTGTRDEIAADLLAHTPENAWILVKGSRGMRLEKIVSQLK 469


>gi|148549596|ref|YP_001269698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           putida F1]
 gi|148513654|gb|ABQ80514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas putida F1]
          Length = 455

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 208/464 (44%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L  A++G  IG        G+SIDSRS++  + F A+ GP +DGHD++   
Sbjct: 1   MLKPLSLSQLTTALKGQHIGG--DATFTGVSIDSRSVSAGQLFVALAGPRFDGHDYLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++      + +P   V     AL +L    R      ++AITGS GKT
Sbjct: 59  KAKGAVAALVEREVAG----VDLPQLLVKGCRVALGQLGALNRAAFDKPVVAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEIR+   
Sbjct: 115 TVKEMLASILRTRGLVHATRGNLNNDLGAPLTLLEIAPEHSAAVIELGASRIGEIRYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P + +I     AH+  F G ++I  AK EI EGL + G   LN DD  F++ KA++ 
Sbjct: 175 LTQPQVVIINNAGTAHVGEFGGPDKIVEAKGEILEGLGEGGIAILNLDDKAFDIWKARAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  + +        +        +         +   G+++ V  + +G H   N L   
Sbjct: 235 AHKVVSFARSNPKADFHASDIG-RDARGCPSFTLHGAGETVAVQLNVLGEHNVSNALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +      L+   P +GR       +      +ID+SYNANP SM AAI +L
Sbjct: 294 AAAHAVGLSLSGIAAGLAAVQPVKGRTVAQ---IAPNGVRVIDDSYNANPTSMCAAIDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H  + +      +  ++  G ++     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGQWAEEGHRQVGDYA-RGKVDALYAVGSNMTHAVKAFGA 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    +  T   L   + +       +++K S S     ++  L
Sbjct: 406 NGR--HFATQAELIDAVSAENASDTTILIKGSRSAAMENVVAAL 447


>gi|21672879|ref|NP_660944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
 gi|21645931|gb|AAM71286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           tepidum TLS]
          Length = 476

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 120/442 (27%), Positives = 186/442 (42%), Gaps = 9/442 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPV 85
           + IDSR       F A+ G   DGH F+      GA   VV+ +     G+         
Sbjct: 34  VVIDSRKAVDGAVFVALPGERTDGHRFVGEVFANGASWAVVSREWFVEKGAEHQGDDRRF 93

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
              DD + A  +LA A R R    +I I GS GKTTTKEML   LS+        G+YNN
Sbjct: 94  LVADDPVKAFQQLAAAYRERFDIPVIGIGGSNGKTTTKEMLAAVLSTSFNVLVTQGNYNN 153

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL +M  D +  + E+G++H GE+ FL+ L +P   ++T I   HL  F  ++ 
Sbjct: 154 HLGVPLTLLQMRRDTEVAVIEMGINHPGEMEFLSSLAKPTHGLLTNIGHEHLEFFGSLDG 213

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A A+A +F  LE  G       D         S +         G  +    +     +
Sbjct: 214 VADAEAALFRYLEAHGGTAFVNLDDHRLAAAGASLSRKTGYGAQPGAGRAWWAEQIGADR 273

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               S+      G    V    +G H   N +    + +          + L    P +G
Sbjct: 274 VGRVSFTLCSESGVHQPVAMQFVGRHNVINAVAASAVGAHFGLAPAHIAEGLGTLLPAKG 333

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +        G   +++++YNANP S++ A+  L+ I     GRRIAVLGDM E+G+ S
Sbjct: 334 WKRM--ELFEDGGIVVLNDTYNANPDSVRLALDTLAAI--ECRGRRIAVLGDMLELGDNS 389

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  +   +    +      G     + +       + +  TMD L  F+   +  GD
Sbjct: 390 AIEHESIGRYIRQLPLDACLTLGDAAQLICEQAGGRC-LRHFGTMDELRGFLSEYVQPGD 448

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            ++ K S         + L+++
Sbjct: 449 ALLFKGSRGMKLELAADDLIKQ 470


>gi|297571249|ref|YP_003697023.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296931596|gb|ADH92404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 470

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 206/474 (43%), Gaps = 15/474 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   + G          V  I+ D+R+I+  E F AI G   DG+ F   A
Sbjct: 1   MIGM-TIEQVATCVDGTISTEPADSLVTSIATDNRTISGGELFVAIAGERVDGNRFAQAA 59

Query: 61  VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAV------AARLRSKATIIAI 113
           +  GA  V+  +     + G+    V  VDD + AL +LA                +I +
Sbjct: 60  LDAGAVAVLTADPAAACATGAAPERVIAVDDPIVALGRLAHEQAHIVRKCGAENFQVIGV 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTK++L   L       A  GS+NN +G+PLT+ R        + E+G  H+G
Sbjct: 120 TGSVGKTTTKDLLAHLLGQRGPIIAPPGSFNNELGMPLTVLRADESTSTLVLEMGADHIG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            + +LT +V P ++V+  +A AHL  F GIE +A AK+E+ EG  + G + LNYDD    
Sbjct: 180 NLAYLTGIVAPDVSVVLAVARAHLGEFGGIENVARAKSELVEGTREGGVVVLNYDDERVR 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +      L    +  F  S      +        ++     +           +    A
Sbjct: 240 DMAK----LAPGKVVYFSASGACRDGVWASDVTLNKTGQASFILHYGQSESRVELKLIGA 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            ++   L   ++             +                +   T+ID+SYNANP SM
Sbjct: 296 HHVANALAAATVALVCGIELDDCARLLTEANAGSPHRMDVWERNGTTIIDDSYNANPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVL 412
           KA ++ L+ +  H     IAVLG M E+GE S++ H  + E+++   I  +   G     
Sbjct: 356 KAGLTALAHLGTHRRK--IAVLGTMLELGEESEAEHAHIGELVAQLGIDTLIAVGPGLSP 413

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  A    + VH +  +      +   L +GDVV++K SN  G +RL + L E
Sbjct: 414 TILTARQGGVEVHETLNVAEATQLLTGLLAEGDVVLLKGSNGSGVWRLADALKE 467


>gi|145627898|ref|ZP_01783699.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145639346|ref|ZP_01794952.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|144979673|gb|EDJ89332.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 22.1-21]
 gi|145271649|gb|EDK11560.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittII]
 gi|309751220|gb|ADO81204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2866]
          Length = 457

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 134/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  VVV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VAQGAVTVVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|229003235|ref|ZP_04161073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
 gi|228758018|gb|EEM07225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock1-4]
          Length = 461

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q +             V G+SID+R I     +  I+G  +DGH F+  A++ G
Sbjct: 8   TLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 67

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS GKT+TK+
Sbjct: 68  AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 126 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 185

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL+  G    N D+          +    
Sbjct: 186 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  ++        +  ++ ++      +      +G H   N L ++ I  
Sbjct: 246 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENIVFY-LPVLGKHNVYNTLASMAIAK 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R      +   T+I+++YNA+P +M+AA  +++ + 
Sbjct: 303 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 360 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 417

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q  +   DVV+VK+S       +I +L 
Sbjct: 418 ERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 461


>gi|323692066|ref|ZP_08106313.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
 gi|323503866|gb|EGB19681.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Clostridium symbiosum WAL-14673]
          Length = 455

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 127/455 (27%), Positives = 208/455 (45%), Gaps = 13/455 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++A+ G  +    +  +  ISIDSR++   + F  + G   D H F+  A + GA 
Sbjct: 6   IRDIVEAVNGRLLCGDMETSLRHISIDSRTMKGDDLFVPLIGEKADAHRFLSQAFENGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +       G     +  V+D   AL  +    R R    ++ ITGSVGKTTT+EM+
Sbjct: 66  ASLTSEHDTCPEGITGA-LIRVEDTKKALQDIGRYIRSRLSLPLVGITGSVGKTTTREMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             ALS+  +T+    ++N+ +GVP+T++ +    + G+ ELGMS  GE+  +  + R   
Sbjct: 125 AAALSAGYRTFKTPANHNSQVGVPITISDISEADEIGVLELGMSEPGEMEVIADIARVDT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I   H+ N    E I   K  I +G++K GT+FLN D+     ++AK        
Sbjct: 185 AVITNIGVTHIENLGSRENILKEKLRIQDGMKKGGTLFLNGDNELLRDVRAKD----GCE 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
              +G   N  ++         +   ++      + VV   +G H   N L  L +    
Sbjct: 241 TSFYGLGANCSYRAVNITYNGGRPAFDMVHGAAVVPVVLEVMGEHNILNALAALAVADHY 300

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +  A +AL  F       K  +    +G  T+ID++YNA+P SMKA I VL+ ++  
Sbjct: 301 HVPLADAAEALKTFDG----FKNRQQIYEKGNITIIDDTYNASPDSMKAGIRVLASLTDR 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
                IAVL DM E+GE +  FH ++   L    +  V   G     +   +   +    
Sbjct: 357 KRR--IAVLADMKELGEDAPLFHYEIGAFLGEQPVEEVITYGALAKEIARGVEGKVKTTV 414

Query: 427 S--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              E  + +  +++  L +GD V+ K SNS     
Sbjct: 415 FEEEQKEEMTEYLEKLLREGDAVLFKGSNSMKLGE 449


>gi|228995608|ref|ZP_04155274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
 gi|228764180|gb|EEM13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 14/464 (3%)

Query: 6   TFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q +             V G+SID+R I     +  I+G  +DGH F+  A++ G
Sbjct: 5   TLKQVEQMVMGVGLAEKYVNETVQGVSIDTRKITTGNLYIPIQGDRFDGHSFVEKAIENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++      ++IPV  V+D L AL  LA + R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWKKNV--QNPPVNIPVIFVEDTLEALQTLAKSYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS  GEI FL+ L RP
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSRGEIEFLSKLARP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + A+IT I  AHL +    + IA AK EI  GL+  G    N D+          +    
Sbjct: 183 NAAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQDGGVFVYNGDEPLLTNRVPSMNLAAE 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG ++  ++        +  ++ ++      +      +G H   N L ++ I  
Sbjct: 243 TI--TFGDARANNYYPTSVTLQATGTYFKMNQDENIVFY-LPVLGKHNVYNTLASMAIAK 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L      +  G R      +   T+I+++YNA+P +M+AA  +++ + 
Sbjct: 300 YFGVTWEEMKQGL---VTLQMTGMRMEIVKTENGLTIINDAYNASPTAMEAAFHLMNGLD 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RS 421
              +   I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +
Sbjct: 357 GFSKK--IVVLGDMLELGDQEVQFHYEVGKLIDPARISYVFTYGRLGAQIAEGAKINFPN 414

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             V   +  + L   +Q  +   DVV+VK+S       +I +L 
Sbjct: 415 ERVKVYDNKEELVKNLQEVVDVKDVVLVKASRGMKLEEVITMLK 458


>gi|168491448|ref|ZP_02715591.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
 gi|183574119|gb|EDT94647.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC0288-04]
          Length = 457

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 131/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     I    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLILAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|328880139|emb|CCA53378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 469

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 208/477 (43%), Gaps = 21/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+     + + + G       P+  V      DSR   P   F A+ G   DGHD+ L
Sbjct: 1   MQPML-LSTIAEVVGGTLADAPDPEALVTAPAVFDSRKAEPGALFVALPGEQADGHDYAL 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGS 116
            AV+ GA  V+           + +P   VDDVL A  +L     A       I+AITGS
Sbjct: 60  SAVKAGAAAVLATRP-------VGVPAILVDDVLAAFGRLGRHLVAHTLVDTKIVAITGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+++   L +  +  A   S+NN IG+PLT++      D+ + E+G   +G IR
Sbjct: 113 AGKTSTKDLIAQLLPAAGRVVATPESFNNEIGLPLTISMADPSTDYLVLEMGARGIGHIR 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +  PHI+V+T +  AH+  F G ++IA AK EI E L  +G   LN DD     + 
Sbjct: 173 DLTRIAPPHISVVTNVGTAHIGEFGGRDKIAVAKGEIVEALPASGLAVLNADDPLVLAMA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A++ A     + SFG S  A  +       +           +    V   +      + 
Sbjct: 233 ARTTA----RVSSFGLSDEATVRATDVTVDAFGRATYTLTTPEGSAPVSLQLVGAPQVSN 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +    V+         I A  +         R   +      T+++++YNANP SM+++
Sbjct: 289 SLAAAAVAREAGLSVADI-ADLLSAATARSRWRMEVSARADGVTVVNDAYNANPDSMRSS 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK 415
           +  L+ ++   E R IAVLG M E+G  S++ H  +  + +  ++  +    G     ++
Sbjct: 348 LEALATMARGPEQRAIAVLGKMNELGSESRAAHEGIGRIAAALDLDRIVFVGGEEAGWMR 407

Query: 416 D---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               A        +    D     +  +L  GDVV+VK+S      RL   LL+  P
Sbjct: 408 QAAAAAGAGGRAVHVPDQDAALQHLSDTLRAGDVVLVKASRGIQLQRLAERLLQPDP 464


>gi|145633136|ref|ZP_01788868.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145635585|ref|ZP_01791283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|144986362|gb|EDJ92941.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae 3655]
 gi|145267147|gb|EDK07153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 457

 Score =  243 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|221133800|ref|ZP_03560105.1| D-alanine:D-alanine-adding enzyme [Glaciecola sp. HTCC2999]
          Length = 469

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 203/468 (43%), Gaps = 18/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  D+ Q + G   G      +  +S D+R I+    F A+ GP+++GH F   A
Sbjct: 1   MINL-SLIDIAQQVNGTLQGN--DLIITNVSTDTREISADSLFIALVGPNFNGHVFANEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q GA  ++ +  + A +     PV  V+D   AL  L    + +     + ITGS GKT
Sbjct: 58  RQNGAVAMIASEPVEAHM-----PVIMVEDTKAALGALGAYVKQKVAPKTVGITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM T  L       +  G++NN IGVPLTL R+  + ++ + E+G +H+GEI + T 
Sbjct: 113 TVKEMTTAILKECGSVLSTQGNFNNDIGVPLTLLRLEAEHEYAVIEMGANHIGEIAYTTG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A I   A +HL  F  +  +A AK+EIF+GL K+GT  LNYD  F++    K  
Sbjct: 173 LVKPDVATIVNAAASHLEGFGSLFGVARAKSEIFKGLSKSGTAILNYDSQFYDFWLGKLD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I +                    +        +     E+           N+   L
Sbjct: 233 NELIYSFSLNSAPGKGADYSASQVGLAFNGCAHFIMHTPIGEMNIEL-TLPGIHNVGNAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++      +           +    R           L+D+SYNAN AS+ AAI +L
Sbjct: 292 LAAALSINVGASLENVRDGLAKIQHVKGRLEVKQLSEKVRLLDDSYNANVASVTAAIKLL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  EGRR+ VLGDM E+G+ ++ +H  + E+    +I   +  G    +  D    
Sbjct: 352 ----SSYEGRRVLVLGDMAELGDQARHYHEQVGELAKSESIEMFYTLGELSKSASDMFGE 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLL 465
                +   ++ L   +   L   D    ++VK S S    R++  + 
Sbjct: 408 G--GQHFSHIEPLLDALYKELYANDNEFTILVKGSRSSRMDRVVTAIE 453


>gi|310828118|ref|YP_003960475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
 gi|308739852|gb|ADO37512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium limosum KIST612]
          Length = 453

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 206/464 (44%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L++  +G  I      +++G +IDSR I   + F  IKG   DGH FI  A +KG 
Sbjct: 5   SLEQLVKITEGRLIQTGTTDWISGAAIDSRKIEENDLFIPIKGEKADGHCFIKIAAEKGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                 T+ +       I V  V+  L A+  LA   R R    +IA+TGS GKTTTK++
Sbjct: 65  STSFTETEALDF--PEGISVVLVESCLEAMKALAKYNRERYDIPVIAVTGSSGKTTTKDL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS   KT    G++NN  G+P TL  +  + +  + E+GM HL +IR     VRPH
Sbjct: 123 IASVLSQKYKTLKTQGNFNNEYGIPQTLFNLQPEHEIAVIEMGMDHLDDIRKSIGEVRPH 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VIT I  AH+      + I +AK EIFE +       LN DD +   +K       + 
Sbjct: 183 ISVITNIGTAHIEILKTQDNILAAKKEIFETMGPGDIALLNGDDVYLNKIKEDEEPFSVV 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +   G+  +         +  + S   ++             G H   N L  + +   
Sbjct: 243 RVGIKGEDLSL------KAEQVDSSAQGIRFVADGEHFHFAYPGIHNVYNCLTAIWLGRY 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L  F P   R    R        T+I++SYNANP +MKAA+ +L  +  
Sbjct: 297 YQMTHEEIQRGLDAFKPSGNRMDIVRVRE----ATVINDSYNANPDAMKAALDMLWDMGK 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
                 +AVLGDM EMGE+++S H+++    +      +   G    A       S    
Sbjct: 353 SCRR--LAVLGDMLEMGEMAESGHLEIGAYAAE-KADVLIAVGPESKAYIKGAGASLADE 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              ++   +G    ++  +  GDV+++K+S      + + ++ E
Sbjct: 410 RCFWTADAEGAGKLLRKLMAPGDVILIKASRGVHLEKTLKMIQE 453


>gi|148828294|ref|YP_001293047.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|148719536|gb|ABR00664.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 457

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQTKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGAKLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVSGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|90020491|ref|YP_526318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
 gi|89950091|gb|ABD80106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharophagus degradans 2-40]
          Length = 458

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 215/465 (46%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +   L +   G  +  G       + I+ D+R+I   + F A+KGP++DGH+++  A +
Sbjct: 3   LSLQALAERFGGEIVYPGEAYNITFSSINTDTRAINHGDVFIALKGPNFDGHNYLDVATR 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V T       +L +P + V D   AL +L +A+R +    +I +TGS GKTT 
Sbjct: 63  KGAAAAIVETP----NTNLDLPQWCVGDSYKALGELGLASREKFNGKVIGVTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ML    S    T A  G+ NNHIGVPL+L R+  +  F + E G S   EI++L  L+
Sbjct: 119 KGMLAAICSLAGSTVATRGNLNNHIGVPLSLMRLANEHQFAVIEAGTSGPNEIKYLAELI 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A++  I P H+  F  +E IA  KA ++ GL + G   LN   +    L       
Sbjct: 179 QPHVAIVNNIMPVHVEGFGSVEAIAIDKAHLYRGLVEGGVGVLNVASAQQPTLLDALQGK 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            I         + A+ +++  +Q    ++     ++G+ +E+    +G H   N L    
Sbjct: 239 KITRFNPELTDEAAEVRVQNIEQDTFGRAEFSAIIEGEEVELKLGVLGAHNVANALAAAS 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   V+   + L  +   +GR +  R        T+ID++YNA+P S+KAAI   +
Sbjct: 299 AARAVGISVELIKRGLEKYTGDKGRMQLARVNEK---LTVIDDTYNASPGSVKAAIDYAA 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q           VLGDM E+GE+  S H ++        I  +W +G             
Sbjct: 356 QFERSA-----IVLGDMGELGEMRNSAHEEIGRYAQQKQIKQLWCTGEASRFTAQGY--G 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            H  + E  + L   +        VV+VK S S    +++N LL 
Sbjct: 409 PHAKWFEDKEQLKQALPMLCSSEVVVLVKGSRSTRMEQIVNALLA 453


>gi|113460500|ref|YP_718564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
 gi|112822543|gb|ABI24632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus somnus 129PT]
          Length = 464

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 127/478 (26%), Positives = 203/478 (42%), Gaps = 24/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  +L        IG      V  +S D+R    +  FFA+KG ++D HD++  A
Sbjct: 1   MIKLST-KELADIFSARLIG-AKDICVEKVSTDTRKPCLRSLFFALKGENFDAHDYLTQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       + +P   V D   AL +LA   R++     IAITGS GKT
Sbjct: 59  VEQGCSAVVVEREC-----DVDVPQLIVPDTRLALGQLAKWLRVKINPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  + +         G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 114 TVKEMTASILQKVAQDPDAVLFTQGNFNNDIGVPLTLLRLESKHKFAVIELGANHQGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   LV+P +A++  +A AHL  F  +E +A AK EI++GL + G   + Y+ S     K
Sbjct: 174 YTVDLVQPDVALVNNVAAAHLEGFGSVEGVAQAKGEIYQGLSENGIAIMEYEHSVRYQKK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                +G      F           +  + +E          +  E+  +     +  N+
Sbjct: 234 YWYEQIGNADTRLFSVMGKVSDYYAQEIKLTETGSQFTLCCIREGEIKINLPYLGLH-NV 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +   S+      +  +  +    K     R           L+D++YNAN +S+   
Sbjct: 293 SNAVAAASLALCLGVSLEQIKAGLEKKSYVKGRLFPIEPCPNLLLLDDTYNANVSSL--- 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            S +  +  + +  RI  +GDM E+G  S S H  +A+   + N+  V   G     +  
Sbjct: 350 KSAIDVLRQYDKFFRIFAVGDMAELGGNSVSCHKQVADFAQMANLDLVVSFGTQSAVISS 409

Query: 417 ALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           A        +      L  +I     Q       V++VK +       +INL+ ++F 
Sbjct: 410 A----CDGVHFSDKTELVNYIIPIIQQKLASQKVVLLVKGARCMQMEDVINLVKDKFQ 463


>gi|152980017|ref|YP_001354709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
 gi|151280094|gb|ABR88504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Janthinobacterium sp. Marseille]
          Length = 455

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 126/463 (27%), Positives = 202/463 (43%), Gaps = 22/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L  A+ G    +      +G+S DSR++     F A++G  +D HDF+    ++  
Sbjct: 4   TLAILQSALNG--ARMTADAAFDGVSTDSRTVGAGNLFVALRGERFDAHDFLPQVAERNV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V  T        L++P   V D   AL ++A   R + K  +I +TGS GKTT KEM
Sbjct: 62  AAIVAET----VPDGLTVPALIVQDTRVALGQIAHYWRRQFKMPLIGVTGSNGKTTVKEM 117

Query: 126 LTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +   L +           G++NN IGVPLTL R+       + ELGM+H GEI  L+ + 
Sbjct: 118 IAAILEAACGVDNYLATRGNFNNDIGVPLTLMRLQKTCKAAVIELGMNHPGEIAVLSAIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + ++      H    + +E +A     +  GL   G      DD F  L +  +   
Sbjct: 178 EPTVGLVNNAQREHQEFMASVEAVAQENGAVLAGLPADGIAVFPADDEFTPLWRQLAAQR 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +FG S +AD +   +   +  S ME+    +   V     G H  +N L  +  
Sbjct: 238 KV---LTFGFSDDADVR-CSYSANAFGSDMEISAGRQQFTVALSAAGVHNVRNALAAIAC 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +    D   + L  F P  GR    +  L      +ID++YNANP S++AAI VL+Q
Sbjct: 294 ALAIGIATDAIARGLQAFAPVSGR---LQRKLAANGALVIDDTYNANPDSVRAAIDVLAQ 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S      RI VLG+M E+G   + +H ++       +I +V   G        A     
Sbjct: 351 MSA----PRILVLGEMGEVGNDGRQYHEEIGAYARAKSIEYVLTLGDLTRYAASAFGAG- 405

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             ++ ++++ L   +         V+VK S      R++  LL
Sbjct: 406 -ANHYDSVEELNDALAGIFTADATVLVKGSRFMKMERVVQHLL 447


>gi|319897399|ref|YP_004135596.1| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           [Haemophilus influenzae F3031]
 gi|317432905|emb|CBY81271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3031]
          Length = 457

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|254456011|ref|ZP_05069440.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083013|gb|EDZ60439.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 947

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 138/451 (30%), Positives = 212/451 (47%), Gaps = 4/451 (0%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G    + P   +    I+S+ +   + FFAIKG   DG+ F+  + ++ A L VVN   
Sbjct: 498 SGKIKRLSPLISLKKARINSQEVTKNDIFFAIKGKKNDGNKFVAQSFKRKASLAVVNKIQ 557

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                S       V + L  L  ++   R      IIAITGS GKTT KE+L   L+ I 
Sbjct: 558 NKLNHS---RQIKVKNTLKFLTNVSKIFRKSIDTNIIAITGSCGKTTLKELLGNTLNKIS 614

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K      SYNN  GVPL+L  +    +FGI E+GM   GEI +L+ ++ P + VIT I  
Sbjct: 615 KVSISPKSYNNKFGVPLSLFNINQKDEFGILEVGMDKKGEIDYLSKIIEPDVGVITNINY 674

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AH  NF  I++IA AK+EI + +   G I LN DDSFF+L    +    IK I    K+ 
Sbjct: 675 AHAKNFKNIKQIALAKSEIIDNIRLYGFIVLNADDSFFKLHYNIAKKKNIKVISFGIKNH 734

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
            AD +L   K   ++  + + L  K    +      +   N+L  L ++SI         
Sbjct: 735 KADIKLINIKPFRKKFRINISLNNKRKYFLLSNDFQNNIYNILSALAVISIYKNIFKLDK 794

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                F    GRG       N     LID+SYN+NP S+K+AI    +I+     + + +
Sbjct: 795 NIFYDFKIPGGRGDHSVIKFNNKKINLIDQSYNSNPLSLKSAIKNYDKINLKKSNKYMLI 854

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            GDM E+G  S+  H  +A +++  NI  V++ G     +   + ++           + 
Sbjct: 855 -GDMLELGSHSRRLHRSVAPIINKSNIDKVYVKGKMASIIFKDISKAKKGRILLNKSQII 913

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             I+  L + D +++K+S + GF  ++  L 
Sbjct: 914 ELIRKDLNNNDYLMIKASLATGFNDIVKDLK 944



 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 158/449 (35%), Gaps = 36/449 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            +GIS D+++I     FFAIKG  +DG++FI  A+ KG+ ++V    + +      I   
Sbjct: 19  FSGISFDTKNIKKNNIFFAIKGNKFDGNNFIPDAINKGSKIIVTEKKVKSVQN--GILYI 76

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             ++V   L + A     +    +IA+TG+ GK++        L    K  A IG+    
Sbjct: 77  HTNNVRKLLAETAFKIYNKKPKNLIAVTGTNGKSSIANFYFQILKLNNKKVASIGTLGVK 136

Query: 147 -----------IGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTI 192
                         P+ LA++   +     E   +  S  G  +     ++ +  + T +
Sbjct: 137 SKNINLNLSNTTIDPIKLAKILSKLKSHKIENVIMEASSHGLKQNRLDGLKFNSGIFTNL 196

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL     ++   +AK  +FE L K     +       E  K K   +  +       
Sbjct: 197 SQDHLDYHKNLKNYLNAKLYLFENLIKKKGNLITDQL-IPEFKKIKKITINKRLKLYALN 255

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            K  + Q+       E    +++L      +  + IG    +N+LM +         ++ 
Sbjct: 256 DKKNNLQVISHSFKGEAQSFKIKLNNSIQNINLNLIGKIQLKNVLMAIIAAKNSNIGLNK 315

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +  +    P EGR ++     N     L    Y   P ++K  +  L +  P  +   I
Sbjct: 316 ILNKIYKLKPVEGRFEKIGKIKNHSKVILD---YAHTPDALKTCLLNLREQFPAKK--II 370

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD---ALPRSIHV 424
            + G     G             ++ Y    + L+       +   ++       +   +
Sbjct: 371 VLFG----CGGNRDQNKRSKMGKIASYFSDKIILTNDNPRLENPQKIRRDIKKGIKKKKI 426

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           L  GD+++V  K 
Sbjct: 427 IEISDRAMAITRAIHDLNSGDILLVAGKG 455


>gi|145220558|ref|YP_001131267.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206722|gb|ABP37765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 473

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 196/442 (44%), Gaps = 12/442 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----V 85
           +SIDSR +     F A+ G   DGH F+    ++GA +V+V+ +  ++ GS   P     
Sbjct: 33  VSIDSRKVEEGGIFVALPGERTDGHRFVDDVFRRGARMVMVSREWYSASGSPLPPPGRGT 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D +  L +LA   R      ++ + GS GKTTTKEML   LS+  + +    + NN
Sbjct: 93  LVVQDTVSGLQQLAAIYRESFSIPVVGVGGSNGKTTTKEMLGAVLSTAMRVHMSHANLNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVPLTL  M  + +  + E+G++H GE+  LT + RP   ++T I   HL     ++ 
Sbjct: 153 HLGVPLTLLAMRRETEIAVVEMGINHPGEMELLTSIARPSHGLLTNIGHEHLEFLVNLDG 212

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A A+  +F  L++TG      +D     L+  +       +Y          +      
Sbjct: 213 VARAERALFSFLDETGGTIFVNNDD--PRLRDAATDPQRHILYGMHCGDCCSCRGGALSV 270

Query: 266 CSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + S    +  +    E+  +  G H   N L    +      +     + L       
Sbjct: 271 LPDGSLRFMLYSERGDEEIRLNFTGRHNVLNALAAAAVGIFFGIEPREVRRGLEG--LVP 328

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G +    ++ G  TL++++YNANP SM+ AI  L  +    +GRRIAV+GDM E+G+ 
Sbjct: 329 REGWKRLEVVSAGGVTLLNDTYNANPDSMRLAIDALLDMP--CQGRRIAVIGDMLELGDA 386

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               H    + L+  ++  ++  G    ++    P     H   + + LF  +   L +G
Sbjct: 387 GPGEHEATGKYLAGSSVDMIFSFGELAGSICFLNPGRCRGH-FTSREKLFDALSRELEEG 445

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           D V+ K S        +  +L 
Sbjct: 446 DTVLFKGSRGMKLEETVTAILA 467


>gi|77460898|ref|YP_350405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384901|gb|ABA76414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 455

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 198/464 (42%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       +L  A+    I        +G+SIDSR+I   + F A+ GP +DGHD++   
Sbjct: 1   MLKALKLSELTNALDARLI--SADASFDGVSIDSRAIKAGQLFIALTGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  S     +P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADST----LPQLLVKDTRQALGQLGALNRAAFTKPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +GVPLTL  +  +    + ELG S LGEI +   
Sbjct: 115 TVKEMLASILRTRGSVHATRGNLNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVG 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A++     AH+  F G E+I  AK EI EGL   G   LN DD  F + K ++ 
Sbjct: 175 LTKPHVAILNNAGTAHVGEFGGPEKIVEAKGEIIEGLAADGVAVLNLDDKAFGIWKTRAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T        +                  +        V  + +G H   N +   
Sbjct: 235 GRKVLTFALSNTQADFHASDLATDA-RGCPAFNLHSPEGVERVQLNLLGTHNVANAMAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +      L    P +GR              +ID++YNANP SM AA+ +L
Sbjct: 294 AAAHALGVSLFGIATGLGAVQPVKGRTVAQLAKNG---MRVIDDTYNANPTSMCAAVDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+G+ ++  H D+ E      +S ++  G +++    A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGDWAEQGHRDVGEYA-RGKVSALYAVGPNMVHAVSAF-- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  T   L   + +       +++K S S     ++  L
Sbjct: 404 GNEAQHFGTQAELIQALGAEQDTNTTILIKGSRSAAMENIVAAL 447


>gi|189501431|ref|YP_001960901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
 gi|189496872|gb|ACE05420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 478

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 110/461 (23%), Positives = 189/461 (40%), Gaps = 16/461 (3%)

Query: 15  QGHSIGIVPQGFV----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            G   G  P   V      + IDSR I   E F A+KG   DGH F+  A +KGA   +V
Sbjct: 19  NGQLSGFAPDDPVIFQEPTVVIDSREITGGEIFVALKGEQTDGHHFVRQAFEKGAACAIV 78

Query: 71  NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +  +  G              D   A+ +LA   RL+    +I I GS GKTTTKEM 
Sbjct: 79  SREWFSRQGSSAHEAGARYLVTADTTEAMQRLAALYRLKFAIPVIGIGGSNGKTTTKEMT 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +    +   G++NNH+GVPLTL  +    +  + E+G++H GE+  L  +  P  
Sbjct: 139 ASVLRARYSVHMSEGNFNNHLGVPLTLFGLREKHEVAVVEMGINHPGEMELLAEIAAPTH 198

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T I   HL     ++ +A+A+  ++  ++K+G +     +     L   +  +    
Sbjct: 199 GMLTNIGHEHLEFLRDLDGVANAETALYRYVQKSGGVVFVNRED--SRLTEAAAGIPSTV 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            Y         +          ++   +     +  V     G H   N +    +    
Sbjct: 257 GYGIALEGEGFWAEDIRMDNLGRALFTLCSSAGNAPVTLGFAGRHNVSNAVAAATVGFHF 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     L    P+EG  +           T+++++YNANP S++ A+ +L ++   
Sbjct: 317 GLTQEEIAGGLERLKPEEGWKRLEFQRAG--GITIVNDTYNANPDSVRNALDLLCELPV- 373

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVH 425
             G+R+AV+GDM E+G +S   H ++    +    +   +  G                H
Sbjct: 374 -TGKRVAVIGDMLELGGVSSPEHEEIGRYAASLDGLDAFYTFGEQAALCCRTAGMKCAGH 432

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +      L   +  SL  GDV+++K S      R+   L+ 
Sbjct: 433 FM-DHGELQHLLHESLSPGDVLLLKGSRGMKLERVAEGLMN 472


>gi|283458382|ref|YP_003363006.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
 gi|283134421|dbj|BAI65186.1| UDP-N-acetylmuramyl pentapeptide synthase [Rothia mucilaginosa
           DY-18]
          Length = 539

 Score =  242 bits (618), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 201/479 (41%), Gaps = 24/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +   +++A  G +IG      Q + +  + DSR +     F A  G   DGH FI
Sbjct: 1   MIKL-SAAQIIEATGGTAIGLEGREEQVYADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113
             A ++GA L +V  +++   G +  P   V DV+ A+  LA       R + + T+I I
Sbjct: 60  PMAFERGATLALVEREVLDEQG-MPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAIFAPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++  P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    
Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDERVL 238

Query: 234 LLKAKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            + ++S A            + G+           +                 E      
Sbjct: 239 RMASRSVAPITYFGVGEKTDANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQ 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                    +         + +     A ++         R          T+I+++YNA
Sbjct: 299 LIGEHHVHNLLAAATIAYNSGISGEKIARALNKAAAASKWRMARTDRADGVTVINDAYNA 358

Query: 349 NPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           NP SM AA+  L+Q+      +     R  AVLG M E+G+ S   H  +  ++   NIS
Sbjct: 359 NPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418

Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +   G     + +A            + +T +     +++ +  GD+V+ KSSN    
Sbjct: 419 KLIAVGDETKPIYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGAKL 477


>gi|297194888|ref|ZP_06912286.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152509|gb|EFH31802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 471

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 119/473 (25%), Positives = 189/473 (39%), Gaps = 18/473 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR++ P   F A +G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEIVGGQSHDIPDPATPVTGPVVIDSRAVEPGSLFAAFRGDRVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   L +P   VDDV  AL +LA     R    ++A+TGS G
Sbjct: 60  -------QAVAAGAAAVLATRPLGVPAIVVDDVQSALGRLARFVVERLGTKVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRKGPTVWTPGSLNNEIGLPLTALRATEETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L   G        +  + L   
Sbjct: 173 TELTPPRIGLVLNVGTAHIGEFGGREQIAQAKGEMVESLPPAGEDGGVAVLNADDPLVRA 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG++ +A  +    +                   V   +          
Sbjct: 233 MASRTKARVLLFGEADDAAVRAENVRLTELGQPTFTLHTPTGCSDVTMRLY-GEHHVSNA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                     D+  +  AL++         R          T+++++YNANP S     +
Sbjct: 292 LAAAAVAHELDMSASEIALALSEADTLSRWRMEVTERPDGVTVVNDAYNANPES--MRAA 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
           + +  +     R  AVLG M E+G+ +   H  +  +    N+  +    G     L   
Sbjct: 350 LRALAAMGKGRRTWAVLGQMAELGDEALVEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 409

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +         +          ++  L  GDVV+VK+S S G  R+   LLE
Sbjct: 410 AYNEGSWGEESVHVSDAQAAVDLLRRELRPGDVVLVKASRSVGLERIAQALLE 462


>gi|145630234|ref|ZP_01786016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984515|gb|EDJ91938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 457

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 213/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +      S+S+P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQE----NSSISVPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIS 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQGSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|312966214|ref|ZP_07780440.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
 gi|312289457|gb|EFR17351.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli 2362-75]
          Length = 452

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 217/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q+   S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQIPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|188996151|ref|YP_001930402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931218|gb|ACD65848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 436

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 132/461 (28%), Positives = 216/461 (46%), Gaps = 29/461 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + + G  + +     +N   IDSR +   + F  +KG + DGH +I  A++KG
Sbjct: 1   MDLAQLKKIVNGEFLNLKENKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +    G        V D   AL ++    R + KA +I ITG+ GKT+TKE
Sbjct: 61  AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVKA-VIGITGTSGKTSTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS++  TYA  G+YNN IGVPLTLA +P ++D  I E+G   +G+I +L  +V  
Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPENIDLTIIEMGAGKVGDIDYLGKMVNQ 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+ ++   H+  F   E +   K EI          F   D S       K +    
Sbjct: 174 DISVLVSVGHGHVGKFGSFENVIKGKGEI----------FNCGDYSVLPSELKKFYNPK- 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+    D ++R  K   + +   ++ +   +E+        + +N+    G++ 
Sbjct: 223 -NPITYGEDG--DIEIRDIKIVKDGTVGVIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D    ++ L  F    GRG+     +N G FT+ID+SYNANP S+K AI +L+ + 
Sbjct: 280 HFGYDPIKNLEVLKDFKSSSGRGE----IINIGNFTIIDDSYNANPLSVKNAIDILNSM- 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EG +I VLGDM E+G+ SQ  H ++ + L++  I ++ L G     + + +     V
Sbjct: 335 ---EGFKIFVLGDMLELGDYSQELHREIGKFLNVSYIDYIMLYGNETKYVFEEIDDKSRV 391

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  DG+   I        VV+VK S       +I  L 
Sbjct: 392 KHFDNKDGIVEDILKFSNYQPVVLVKGSRGMKMEDVILKLR 432


>gi|215485252|ref|YP_002327683.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263324|emb|CAS07639.1| UDP-N-acetylmuramoyl-tripeptide: D-alanyl-D-alanine ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|320197463|gb|EFW72077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Escherichia
           coli WV_060327]
 gi|323190232|gb|EFZ75508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli RN587/1]
          Length = 452

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 137/468 (29%), Positives = 216/468 (46%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFAGQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R +  A ++A+TGS GKT
Sbjct: 58  KAGGAGALLVSRPL-----DIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 SRKVWR--FSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +D     L+      GR    + A N     L+D+SYNAN  SM AA+ VL
Sbjct: 291 ALSMSVGATLDAIKAGLANLKAVPGRLFPIKLAEN---QLLLDDSYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  S++ H+ + E      I  V   G    A+  A   
Sbjct: 348 AEMP----GYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDCVLSVGKQSHAISTA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           S    +      L   ++S + +  V  ++VK S S     ++  L E
Sbjct: 401 SGVGEHFSDKTALIARLKSLIAEQQVITILVKGSRSAAMEEVVRALQE 448


>gi|229826427|ref|ZP_04452496.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
 gi|229789297|gb|EEP25411.1| hypothetical protein GCWU000182_01800 [Abiotrophia defectiva ATCC
           49176]
          Length = 487

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/487 (26%), Positives = 201/487 (41%), Gaps = 31/487 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHAV 61
           T  D+L A  G  +       +NG   +SR I         F  I G   D H+FI   V
Sbjct: 4   TVQDILNATNGRLLNGSADTVINGFFTNSREIGSLPFKNALFVPIIGERVDAHNFIPQVV 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           + GA    +        G        V+D   AL    +  R +     I ITGSVGKTT
Sbjct: 64  ENGAKAFFIKKGHELPSGIGETAAIEVEDTEAALLDTGLWYREKFNIPFIGITGSVGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+  AL S    +   G+ N+ IG+PLTL  +    +  I E+G+S   E+  L   
Sbjct: 124 TKEMVAAAL-SSINIHKTKGNANSTIGLPLTLFGLEPCNEAAIIEMGISEFHEMEKLVEA 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA---K 238
            RP+ A+ T +  AH+ N    E I   K  I +       +F+N DD     + A   +
Sbjct: 183 GRPNHAIFTNVGSAHIGNLGSKENILKEKLHITDCFTADSVLFINADDELLMKVAAENSE 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-----YHMA 293
                +K I +FG ++ ADF           +      + ++ E V   I       H  
Sbjct: 243 FRPKNVKHIVTFGINEKADFYASSITISDSGTDFVANYKSENGEAVSEQIHLKTLGLHNV 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  + +   L      + K L+ + P  GRG   +        T+ID++YNA+P SM
Sbjct: 303 RNALAAIAVALKLGISPAVSKKGLAEYEPLPGRGNIIKSNG----LTIIDDTYNASPDSM 358

Query: 354 KAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLAEVLS-------LYNISHV 404
           KA++ ++ ++    E   RR  V  D+ E+GE +++ H  + E +           I  +
Sbjct: 359 KASVQIIGEMRGGTEPINRRFVVFADVLELGEYAETEHYKVGEYIKFYNKENTENKIDCL 418

Query: 405 WLSGFHVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G     +      + L  +    +  T      +++S L  GD +VVK S       
Sbjct: 419 ITVGKDSEQIILGVKSEDLETNPVTRHFSTNVEASDYLKSLLKKGDAIVVKGSRGMQTEE 478

Query: 460 LINLLLE 466
           +IN +L 
Sbjct: 479 IINSILN 485


>gi|288958919|ref|YP_003449260.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
 gi|288911227|dbj|BAI72716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Azospirillum sp. B510]
          Length = 498

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 193/465 (41%), Positives = 262/465 (56%), Gaps = 2/465 (0%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LWT  D   A  GH  G        G++IDSR +AP + F AI+GP++DGH F+  A+
Sbjct: 5   TVLWTARDAAAATGGHLTG-PSAWAATGVAIDSRKVAPGDLFVAIRGPNFDGHAFVGAAL 63

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA   +V+           + +  V D L A+  + V AR    A II +TGSVGKT 
Sbjct: 64  AAGAVAALVDHPPDGLPADAPLLIAPV-DPLEAMAAMGVVARANCGARIIGVTGSVGKTG 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE L   LS+   TYA  GS NNH GVPL+LAR+P D  +G+FELGM+H GEI  L+  
Sbjct: 123 TKETLRHVLSAQGATYATEGSLNNHWGVPLSLARLPADSAYGVFELGMNHAGEIGPLSRQ 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+PH+A+ITT+  AHL  FSG+E IA AKAEIFEGL+  G   LN D+  +  L A +  
Sbjct: 183 VKPHVAIITTVEAAHLEFFSGVEAIADAKAEIFEGLDPNGVAVLNRDNGQYARLAAAARR 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  ++ FG  + AD +L      +  S +   ++G+ ++      G H   N L  L 
Sbjct: 243 HGLSHVWGFGTDEKADARLLDCSLHATCSAVTAVIRGERLQYCLSQPGRHWVMNSLSVLL 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V  L  DV TA +ALS     +GRG R R  L QG FTLIDESYNA+PA+M A + VL 
Sbjct: 303 AVKALGGDVATAARALSSLPSVKGRGTRRRIQLPQGAFTLIDESYNASPAAMAATLEVLG 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +I P   GRR+AVLGDM E+G+ + + HI LAE L    +  V   G H+ AL D LP +
Sbjct: 363 KIDPGAGGRRVAVLGDMRELGDRADALHIALAEPLRAAQVDTVHACGPHMRALFDRLPEA 422

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   ++ET   L   + + +  GDV++VK S       +++ L  
Sbjct: 423 MRGVWTETSVELAPIVAAGVKGGDVIMVKGSLGSRTGLIVDALTA 467


>gi|312874957|ref|ZP_07734976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311089702|gb|EFQ48127.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2053A-b]
          Length = 455

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD+I +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYIANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|255326224|ref|ZP_05367310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296678|gb|EET76009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 539

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/479 (25%), Positives = 200/479 (41%), Gaps = 24/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +   +++A  G +IG      Q F +  + DSR +     F A  G   DGH FI
Sbjct: 1   MIKL-SAAQIIEATGGTAIGLEGREEQVFADFATTDSREVQTGTLFVAKPGAVTDGHRFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAI 113
             A ++GA L +V  +++   G +  P   V DV+ A+  LA       R + + T+I I
Sbjct: 60  PMAFERGATLALVEREVLDEQG-VPYPSIQVPDVVLAMGDLARYSIEQMRAQGELTVIGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L    +    T A +GSYN+ +GVPLT+ R      + + E+G  H+G
Sbjct: 119 TGSAGKTTTKDLLAAIFTPEGPTVAPVGSYNSEVGVPLTVFRADESTRYLVIEMGADHVG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L ++  P    I  +  AH   F G++ I   K E+ EG++ TG++ LN DD    
Sbjct: 179 NIEYLANIAHPDHGAILKVGTAHAGEFGGVDNIERTKGELAEGVQPTGSLALNADDERVL 238

Query: 234 LLKAKSHALGIK-----TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            + ++S A            + G+           +                 E      
Sbjct: 239 RMASRSVAPITYFGVGEKTGANGQPYERYVAALNLRTTDAGCPEFTLRLPDGSEYEISSQ 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                    +         + +     A ++         R          T+I+++YNA
Sbjct: 299 LIGEHHVHNLLAAATVAYNSGISGEKIARALNKAAAASKWRMARTDRADGVTVINDAYNA 358

Query: 349 NPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           NP SM AA+  L+Q+      +     R  AVLG M E+G+ S   H  +  ++   NIS
Sbjct: 359 NPESMAAALRTLAQLGRTVDPATGQPHRTWAVLGAMLELGDASVEEHDRIGRLVVRMNIS 418

Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +   G       +A            + +T +     +++ +  GD+V+ KSSN    
Sbjct: 419 KLIAVGDETKPTYNAAHLEGSWGNEATWVKTPEEAEQILRAEVRPGDIVLFKSSNGAKL 477


>gi|253752071|ref|YP_003025212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|253753896|ref|YP_003027037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|253755229|ref|YP_003028369.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251816360|emb|CAZ51991.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis SC84]
 gi|251817693|emb|CAZ55441.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis BM407]
 gi|251820142|emb|CAR46473.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus suis P1/7]
 gi|319758437|gb|ADV70379.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis JS14]
          Length = 453

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 205/472 (43%), Gaps = 31/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I +      N +  DSR +   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G  + +          SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 115 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL        
Sbjct: 175 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL------PS 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG+  +             +  +   +     ++     G + A N ++   + 
Sbjct: 229 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 284

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+          R           ++ + YNANP +M+  +   + I
Sbjct: 285 KTLGVPDEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFTSI 341

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 342 PANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 401

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V++       +  + L   ++ SL   D ++ K SNS    +++  + +
Sbjct: 402 IGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 453


>gi|146319004|ref|YP_001198716.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|146321212|ref|YP_001200923.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
 gi|145689810|gb|ABP90316.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           05ZYH33]
 gi|145692018|gb|ABP92523.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus suis
           98HAH33]
          Length = 457

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 205/472 (43%), Gaps = 31/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I +      N +  DSR +   + F  +KG   DGHDFI  A + 
Sbjct: 7   LTLHEVAQVLGAKNDISLYTDTAFNKVEFDSRLVTTGDLFVPLKGAR-DGHDFIPVAFEN 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G  + +          SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK
Sbjct: 66  GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 119 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++VIT    AHL  F   EEIA  K +I +G+E    + +  D    +LL        
Sbjct: 179 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPADPIADKLL------PS 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG+  +             +  +   +     ++     G + A N ++   + 
Sbjct: 233 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+          R           ++ + YNANP +M+  +   + I
Sbjct: 289 KTLGVPDEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFTSI 345

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 346 PANEGGKKIAVLADMKELGSQSVDLHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 405

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V++       +  + L   ++ SL   D ++ K SNS    +++  + +
Sbjct: 406 IGKVYFFRKNAEQDQFEDLVKQVRESLGKEDQILFKGSNSMNLGKVVEAIEK 457


>gi|218708482|ref|YP_002416103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
 gi|218321501|emb|CAV17453.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           splendidus LGP32]
          Length = 457

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 212/469 (45%), Gaps = 23/469 (4%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAVSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCNVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I+ +  AK EIF+GL    T  +N + +  +       A  
Sbjct: 180 PQVALVNNVAAAHLEGFGSIDGVKQAKGEIFQGLAADDTAIVNLESNGGDFWND-VLADK 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S   SK   F          ++  ++Q    S+ V    IG H   N L    + 
Sbjct: 239 SVLTFSESDSKADYFAKNICINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAALS 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +D     L+     +GR +  + + N     LID+SYNA+  +M       +++
Sbjct: 299 IQFGASLDEVKNGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +      +
Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407

Query: 424 VHYSETMDGLFLFIQSSLV-DGDV---VVVKSSNSCGFYRLINLLLEEF 468
             +  T   +   I+  L     V   ++VK +NS G  ++   L E F
Sbjct: 408 GTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|89895657|ref|YP_519144.1| hypothetical protein DSY2911 [Desulfitobacterium hafniense Y51]
 gi|89335105|dbj|BAE84700.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 480

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 128/480 (26%), Positives = 201/480 (41%), Gaps = 33/480 (6%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++G   G   Q   +G  IDSR +   E FFA+ G   DGHD+I  A QKGA +V+   +
Sbjct: 2   VRGELTG-DSQVRASGCCIDSRGVKAGEIFFALVGERTDGHDYIEGAWQKGASVVIGEKE 60

Query: 74  MVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +     + +P    +  V+  L A+  LA A R    A ++AITGS GKTTTK+M+   
Sbjct: 61  RLEHRREVRVPEGKALIRVESGLAAMQTLAQAWRKELGAKVVAITGSNGKTTTKDMVAAV 120

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   + +  + + NN +G+P+T+   P + +  I E+GM  LG+I FL  + RP I VI
Sbjct: 121 LSEKYRVHKNMENQNNELGLPMTILNAPENTEVLILEMGMRGLGQIAFLCAIARPDIGVI 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL------- 242
           T I   H+      + IA AK E+ E L +TG+  LN +D +   L  +           
Sbjct: 181 TNIGTTHMELLGSQQAIAQAKWELIEALPETGSAVLNGEDEWSVKLAGQDSHQTFFYGLE 240

Query: 243 -----------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                       +      G       +           + EV  +       H  +   
Sbjct: 241 GRFHEPDLRGMNLTPFGILGTRFQVGHRQVGHGDRCAVPFAEVAAEVGQKTCPHVSLPLP 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L  L  +S+      +  +        E    R          TLI + YNANP 
Sbjct: 301 GEHNVLDALAALSVGILLDVSLEEGCRGLAAMELSRMRLELHQGPEGSTLISDVYNANPT 360

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM    + L  +   G    +A+LG+M E+GE S+  H ++ + ++   IS +   G   
Sbjct: 361 SM---KASLQVLKERGGASTLAILGEMYELGEASREGHYEVGQTVAELGISELITVGPLA 417

Query: 412 LALK-DALPRSI---HVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLL 464
             +   AL + +    +H     +G     Q     L  G  V++K+S       +   L
Sbjct: 418 EEIACGALEKGLSPQRIHSFPDREGAIKKAQELLADLNQGTWVLIKASRGMKMEEVTRAL 477


>gi|269926718|ref|YP_003323341.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790378|gb|ACZ42519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 463

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 21/476 (4%)

Query: 5   WTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               D+ +   G  +       +  V  I+ DSR +   + F AIKG   DGHD+I  AV
Sbjct: 1   MKLRDIKEGTNGKILSGSTLDLEREVGDITTDSRLVKKGDVFIAIKGERVDGHDYIQDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  +V++    +     S+    VDD + AL KLA   R +  A  I ITGSVGKT+
Sbjct: 61  SRGAQALVLSR-TPSIQIPESVLALEVDDTVLALGKLAAYWRNKMPAKTIGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFLTH 180
           TKE+    LS    T     SYNN IG+PLTL  +  +V+  + E+ G   +GEI +L  
Sbjct: 120 TKEVTASILSRKFVTLRSQKSYNNEIGLPLTLLGLTPEVEVAVLEMGGAYRMGEIEYLCS 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I V+  +  AH+     +E IA  K+E+   L   G   LN DD   + +     
Sbjct: 180 IAKPFIGVVIVVGYAHIGRMGSLERIAENKSELVRSLPSEGFAILNRDDHRVKAMAD--- 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 ++     ++         +        + +  +S +V    +G H    +L ++
Sbjct: 237 VTKAHVVWYGLDEESYIRATDVVSEGLNGIRFVLHIGDRSYQVKAPLLGRHSVHTILASV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  ++  +    + A+    P                 T++D++YNANP SM AA+++L
Sbjct: 297 AVAHVMGMEDQEIVHAIKELPPGLRLIVN----KGINGSTILDDTYNANPTSMLAALNLL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I    EG RIAVLGDM E+G  ++  H+ +    +      ++  G     +     +
Sbjct: 353 NDI----EGHRIAVLGDMAELGHFTEEGHLKVGARAAEV-CDKLYTVGELAQIIARGALQ 407

Query: 421 S----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
           +      V   +        ++  L +GDVV+VK+S      +L+  L  +   +Q
Sbjct: 408 AGMNPGDVVTLKDYQEAIDVLKRDLHEGDVVLVKASRIVSLDKLVAALTVQNEVVQ 463


>gi|300309674|ref|YP_003773766.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072459|gb|ADJ61858.1| UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 486

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 124/477 (25%), Positives = 198/477 (41%), Gaps = 27/477 (5%)

Query: 3   PLWTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            L T      A  + G          +N +  DSR++ P   F A++G  +D HDF+   
Sbjct: 12  WLRTAEAAASAHTVPGVVNAPAGLLALNDVVTDSRAVKPGNVFVALRGERFDAHDFLDAV 71

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  VVV          L++P   V D   AL ++A   R++ +  +I +TGS GKT
Sbjct: 72  ADQGAAAVVVER----VPPGLALPAIVVPDTRAALGQIAHGWRMQRQIPVIGVTGSNGKT 127

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+   L++           G++NN IGVPLTL R+       + E+GM+H GEI  
Sbjct: 128 TVKEMIATILAAAFGEEGYLGTRGNFNNEIGVPLTLFRLRAQHQAAVIEMGMNHPGEIAV 187

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ +  P + ++      H    + +E +A     +   L   G      DD F  L + 
Sbjct: 188 LSRIAAPTLGLVNNAQREHQEFMATVEAVARENGAVIRHLPADGVAVFPADDDFTPLWRE 247

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMA 293
           +    G + + SFG S  AD            +               +V    +G H  
Sbjct: 248 E---AGARRVLSFGLSAQADVSASYQATAFGSTLQVAVKGLAVPPAQFKVELAAVGEHNV 304

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            ++  ++ L  F P  GR +R           +ID++YNANP S+
Sbjct: 305 RNALAAAACALGAGIAIEAVVRGLESFAPVNGRLQRKEARSG---ALVIDDTYNANPDSV 361

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AAI VL+ I+    G R+ VLGDM E+G+    FH ++        I   +  G     
Sbjct: 362 RAAIDVLAAIA----GPRVLVLGDMGEVGDQGPQFHAEIGAYARSRGIPLFFGLGELTKH 417

Query: 414 LKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              A   +        + + +  L   ++ +   G  V+VK S      R++  L+ 
Sbjct: 418 AVTAYGATPQGVAQALHFDDIAALNAAVEQAAPQGATVLVKGSRFMKMERVVQHLVN 474


>gi|182439210|ref|YP_001826929.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|178467726|dbj|BAG22246.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2
           ,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 473

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 200/476 (42%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+P+T      + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +     FG++  AD +  K +  ++               V   +          
Sbjct: 233 TRARVLL----FGEAPEADVRGEKVRMTADGRPAFELHTPTGCSDVTMRLY-GEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALR 347

Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|293365894|ref|ZP_06612597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307702297|ref|ZP_07639255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|291315572|gb|EFE56022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
 gi|307624100|gb|EFO03079.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus oralis ATCC 35037]
          Length = 457

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVVTLSEKEVA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADSIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG     +           ++ +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGPGAELEIT----DLVERKNSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVVDTVIFYGEDIAELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVFYFKKTADEDQFEDLVKKVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|157825983|ref|YP_001493703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
 gi|157799941|gb|ABV75195.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rickettsia
           akari str. Hartford]
          Length = 449

 Score =  242 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 242/463 (52%), Gaps = 16/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N + ++S+ +   + F A+KG   DGHD+ L A
Sbjct: 1   MI--WNSKTLSFALGITI---SNSINCNEVQLNSKDVKKGDLFIALKGNR-DGHDYALDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+  +  +       +  VDD   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAAAVIVSKQVEITDKD---KILLVDDCFEALKKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L I L      +A  G++NN++G+ + LA M  D+++ I ELGM+H GEIR L  
Sbjct: 112 STKEALKILLQHDSLVFAGRGNFNNYLGLLINLASMADDMEYAILELGMNHKGEIRELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IAVIT I+ AHL  F+ +EEIA AK EIFE   K     +N D + +  + +   
Sbjct: 172 ILKPNIAVITNISEAHLEFFNSLEEIAEAKCEIFENFSKNDIAVINADTNCYSKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  +Y+FG   N   QL  ++    Q  ++ ++  KS+E+    I  H A+N  + L
Sbjct: 232 NLYIDRVYNFGILHNTHAQLVLYEHLGAQVRLKYKINNKSLEITIPFIPRHFAKNYTVVL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL  D++ A   L+  +P +GRG      +N     +I + YNA+P SM+AA+  L
Sbjct: 292 LIIDILGKDIEIAANHLANIYPTKGRGD----IINIQNARVICDYYNASPKSMQAALEYL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    A++GDM E+G+ S+  H +L   +     S ++L G +   + D LP 
Sbjct: 348 KQVMAENK---TAIIGDMLELGKNSKLLHEELVPYILDVGCSKIYLVGVNTKYIYDLLPS 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   Y + +D L   I       D++++K S      ++++ 
Sbjct: 405 KIAKKYFKNVDELITHITDLFKGNDLILIKGSRGLKLDKIVDY 447


>gi|194290817|ref|YP_002006724.1| d-alanine:d-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
 gi|193224652|emb|CAQ70663.1| D-alanine:D-alanine-adding enzyme [Cupriavidus taiwanensis LMG
           19424]
          Length = 458

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 190/471 (40%), Gaps = 23/471 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
                 I G  I          +  DSRS+ P + F A++G  +D HDFI   V +GA  
Sbjct: 2   QQAAGWIAGARICGDGAVPFARVHTDSRSVEPGDLFVALRGERFDAHDFIADVVARGAAA 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+V+ ++ A+     +P     D   AL +L    R +     +A+TGS GKTT KEM+ 
Sbjct: 62  VLVSREVDAA-----VPAIVAPDTRIALGQLGAGWRRQFTLPAVAVTGSNGKTTVKEMIA 116

Query: 128 IALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
              ++           G+ NN IG+PLT+ R+       + ELGM+H GE  +L  + +P
Sbjct: 117 AIFAAAVGEDQRLATGGNLNNDIGLPLTVLRLRATHKLAVLELGMNHPGETVYLAGIAQP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT     H      +E +A   A     L   G      D            A   
Sbjct: 177 TVAVITNAQREHQEFMVSVEAVAHEHAAAIAALPADGVAVFPLDAESGGAYAPVWRAAAG 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                   +          +       M+V+  G + EV    +G H  +N L  +    
Sbjct: 237 TRRVLSFGTTQQADVHATVELVDGVQVMQVRAPGHAFEVRLALLGEHNVRNALAAIACAL 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V      L+ F P +GR    +         +ID++YNANP SM+AAI VL+  +
Sbjct: 297 AAGVHVPAIQAGLAEFKPVKGR---LQVKYTPAGTVVIDDTYNANPDSMRAAIDVLAGFA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                 R+ VLGDM E+G+   +FH ++        I  +W +G   +    A   +   
Sbjct: 354 A----PRVLVLGDMGEVGDQGPAFHDEIGAYAQARGIEVLWATGELAVHAVQAFGANGR- 408

Query: 425 HYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            +  + + L   ++          G  V+VK S      R++  L+ +  A
Sbjct: 409 -HFGSAEDLAKALEEDSGGMVAQAG-AVLVKGSRFMRMERMVAALVADTSA 457


>gi|149021236|ref|ZP_01835482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|147930337|gb|EDK81321.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP23-BS72]
          Length = 457

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L+       
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLMPADPIVEDYLQ------T 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|260893416|ref|YP_003239513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
 gi|260865557|gb|ACX52663.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Ammonifex
           degensii KC4]
          Length = 464

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 201/470 (42%), Gaps = 17/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59
           M PL     L + ++   I   P   V  +  D+R  I     FFA+KG  ++GH F+  
Sbjct: 1   MIPL-EAGRLAEIMEARLIRGSPDRIVRAVFTDTREEIPEGALFFALKGERFNGHHFVAE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  KGA   VV+  +          +  V DVL AL +LA   R  +   +I +TGS GK
Sbjct: 60  AGAKGALGAVVSR-LPEQPLPPDFLILEVTDVLAALQRLAHYVRRATGPFLIGVTGSTGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L+   +  A  G+ NN IGVPLTL  +  + +F + E+ M   GEI  L+
Sbjct: 119 TTTKDLLAAVLAVRHRVLATRGNRNNEIGVPLTLLELGPEHEFAVVEMAMRGEGEIAALS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P+ AVIT I  AHL     +  IA AK EI + +   G   L  +  F E    + 
Sbjct: 179 ALAEPNAAVITNIGEAHLERLGSVRAIARAKGEILDYIPPEGFAVLPAESPFIEEEARRC 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I    S                  +     V+      E      GYH A N    
Sbjct: 239 RGKVIYFGESDKAQVRLLSY---TSLGEKGCVFRVRTATGEEEYQLPLPGYHNALNCTAV 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L    +   +                   +   FT+I+++YNANPASM  A+ V
Sbjct: 296 IAIARQLGFSPEEVQEGFRRVQ----TSGMRLEIEHWRGFTVINDAYNANPASMAGALEV 351

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++      R++AVLGDM E+GE + + H ++ E  +      + + G     L     
Sbjct: 352 LAEL--GKGRRKVAVLGDMLELGERTVAAHREVGEKAAAV-ADLLVVVGERARDLAAGAL 408

Query: 420 RSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +      V    T++     + + L   +V++VK+S + G  R++  L 
Sbjct: 409 SAGMPPDRVLAVATVEEAIRQLMNELEGDEVLLVKASRAMGLERVVQALR 458


>gi|307127880|ref|YP_003879911.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
 gi|306484942|gb|ADM91811.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae 670-6B]
          Length = 457

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 199/475 (41%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L      + 
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPTDKKVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G                 +  +  ++      +     G + A N ++   + 
Sbjct: 236 FGQGAELGI----------TDLVERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|15903557|ref|NP_359107.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116515757|ref|YP_816939.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
 gi|15459176|gb|AAL00318.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine
           ligase [Streptococcus pneumoniae R6]
 gi|116076333|gb|ABJ54053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae D39]
          Length = 457

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PI 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|109899824|ref|YP_663079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pseudoalteromonas atlantica T6c]
 gi|109702105|gb|ABG42025.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 471

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 143/474 (30%), Positives = 216/474 (45%), Gaps = 26/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +   + Q +QG  I     I     + G+S D+R I   + F A+ GP++DGH F
Sbjct: 1   MIPV-SLAWIAQQVQGEIIRSENSIAEDAIIQGVSTDTRHINSDDLFIALSGPNFDGHKF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A   GA  VVV+  +        +    V D   AL  L  A +       +AITGS
Sbjct: 60  IEQAQTSGAIAVVVSRQV-----ETPLAQILVSDTKAALGLLGQAVKREVAPKTVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM+   LS   K  A  G++NN IGVPLTL R+    +F + ELG +HLGEI 
Sbjct: 115 SGKTTVKEMVAAILSRRGKVLATKGNFNNDIGVPLTLLRLEAQHEFAVVELGANHLGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P +A I   A AHL  F  +  +A AK+EIF+GL K G    N D  F+    
Sbjct: 175 YTTELVKPDVATIVNAAAAHLEGFGSLLGVARAKSEIFKGLGKDGLAIFNADSQFYAFWH 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            K   L  +   + G+   AD+  +             +      + +     G H   N
Sbjct: 235 GKYEHLRNQRFSTQGE---ADYYAQDVVLGLSGCADFLMVTPIGKVSITLPLPGIHNVSN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L++  +   + A++      L       GR +  + +       ++D++YNAN AS+ A
Sbjct: 292 ALVSAALAIEVGANLQDVQAGLQYMAQVSGRLQVKQLSGQVK---VLDDTYNANVASVNA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI +L   +    GR+I VLGDM E+GE ++ +H  + E      I  ++  G    +  
Sbjct: 349 AIDLLGSFA----GRKILVLGDMAELGERARFYHQQVGEYAKEKGIDDLYTLGVLSQSAS 404

Query: 416 DALPRSIHVHYSETMDGLF--LFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLE 466
           D   +S   ++    D L   L    +    D+ ++VK S S     ++  L  
Sbjct: 405 DVYQKS--GYHFSDKDKLVAALAEHLAAEKRDISILVKGSRSARMELVVEALEA 456


>gi|160880626|ref|YP_001559594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
 gi|160429292|gb|ABX42855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           phytofermentans ISDg]
          Length = 507

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/505 (23%), Positives = 202/505 (40%), Gaps = 51/505 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +++     G  I       +  IS +S+       F  I G   D HDFI  A ++G  
Sbjct: 6   VNEIATITGGTIIKGNNDRTIFKISTNSKVGDSDTLFVPIVGERVDAHDFIADAYRQGIR 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + + + D +A  G+  +    V+  + AL +L    R  S   II ITGSVGKTTTKEM+
Sbjct: 66  VTLTSKDEIAE-GTEDMVYIKVNHTVEALQRLGEYHRDHSNVPIIGITGSVGKTTTKEMI 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             A S+       IG+ N+ +G+P  +  +    + GI E+GMS  GE+  +  + +P +
Sbjct: 125 AAAFSTRSNVLKTIGNMNSQVGLPQMMLMLEDTHEVGIIEMGMSEFGEMERIAKVAKPKM 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T I  +H+      E I   K  I     +   + LN DD     +  +        
Sbjct: 185 AVVTNIGVSHIGQLKTQENIRKEKLNIVNYFTEDSILLLNGDDQLLLEIYDEYRKDNSSV 244

Query: 247 I------------------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                                    Y+FG + +        K   E +      +  + E
Sbjct: 245 KEKTQNNGSVDLSEMTRRSLNKASVYTFGTNPDCTIYADNIKTDGESTTFTFHYKNGTKE 304

Query: 283 -----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                +    +G H   N L  +     L  D   A + L  + P   RG+  +      
Sbjct: 305 ELVDDITLSVLGKHNILNALAAIFFAIQLGIDPLAAKEGLKEYKPIAMRGEIEKVNG--- 361

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID++YNA+P SMK AI V+  +    +     V  D+ E+G++S+  H ++ E L+
Sbjct: 362 -ITIIDDTYNASPDSMKGAIHVIMDMPKEHKK--FIVFADILELGDISKKCHYEVGEYLA 418

Query: 398 LYN------------ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLV 442
                          I  V   G     + D +  +   I+       +  F +I+++L 
Sbjct: 419 KQCKIEKACGKESTFIDEVITIGEEAKYILDGVRENGEDINTKSFMEREEAFKYIKTNLT 478

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
             DV+++K S       ++  L EE
Sbjct: 479 KRDVILLKGSRGMKLDLIVERLKEE 503


>gi|163738710|ref|ZP_02146124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388038|gb|EDQ12393.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis BS107]
          Length = 470

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 170/448 (37%), Positives = 239/448 (53%), Gaps = 10/448 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+RSIA  + F A+K    DGHDF+  A++KGAG  +V+            
Sbjct: 20  DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSR--RPEGVGDDA 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDDV  AL  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + SY
Sbjct: 77  PLLLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F GI
Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGI 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           E IA+ KA I +GLE  G   LN D       + +  +            G         
Sbjct: 197 EGIAAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERVTHDVQWFGTGTGPIAPTYHLT 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +  E   +      ++  +    +G H A N L  L  ++ L  D+  A+++LS++
Sbjct: 257 ATTLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLW 316

Query: 321 HPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            P  GRG R   +    QG   L+D+SYNANP S+ AA++VL+       GRRIA LGDM
Sbjct: 317 SPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDM 374

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G   Q  H DLA++ ++  +  +   G  + AL  ALP      +  T D +   + 
Sbjct: 375 KELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDDVRADLA 434

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  GDVV+ K S S    ++++ + E
Sbjct: 435 GQIAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|307705389|ref|ZP_07642248.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
 gi|307621052|gb|EFO00130.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus mitis SK597]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T +++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIYEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKELA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+I KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTIYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    +IA  K +I +G+     +    D      L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSDIAKGKMQIADGMSSNSLLLAPADPIVESYL------PA 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQDLELTRNRTEWKKAANGAD---VLSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   I  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVIDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|15901505|ref|NP_346109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658550|ref|ZP_01409213.1| hypothetical protein SpneT_02000306 [Streptococcus pneumoniae
           TIGR4]
 gi|14973162|gb|AAK75749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|332072838|gb|EGI83319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 198/475 (41%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +         + L      + 
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPAAPIVEDYLPTDKKVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G                 +  +  ++      +     G + A N ++   + 
Sbjct: 236 FGQGAELGI----------TDLVERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|332200229|gb|EGJ14302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 200/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+          D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  +         ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|301800481|emb|CBW33120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae OXC141]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|68249683|ref|YP_248795.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229846165|ref|ZP_04466277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|68057882|gb|AAX88135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 86-028NP]
 gi|229811169|gb|EEP46886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 7P49H1]
 gi|309973399|gb|ADO96600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R2846]
          Length = 457

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|225848044|ref|YP_002728207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643233|gb|ACN98283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 433

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 134/462 (29%), Positives = 212/462 (45%), Gaps = 29/462 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + ++G  + I     V   +IDSRS      F  +KG + DGH +I  A++K 
Sbjct: 1   MRLTDLAKVVEGKILNIEEDLEVKSFTIDSRSSTQDSVFIPLKG-NTDGHSYIEDALKKW 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           +   +    +    G        V D   AL K+A+  R     T++ ITGS GKT+TKE
Sbjct: 60  SVGYLTEKPLNFKNG------ILVKDTYQALKKIAIYKRKSID-TVVGITGSSGKTSTKE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS+  KTYA  G+YNN IGVPLTLA  P +    I E+G   +G+I +L ++V P
Sbjct: 113 LLNFVLSNFYKTYATSGNYNNEIGVPLTLANTPENTHIAIIEMGAGKVGDIDYLNNIVNP 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I V+ ++  AH+  F   E I   K EI          F               +   +
Sbjct: 173 DIGVLVSVGHAHVEKFGSFENIIKGKGEI----------FNTSHYHVLPFDLLNYYKDKL 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K   +FG+    + ++   K   E +  +V  + + +++        + +N+    G++ 
Sbjct: 223 KKFITFGEEG--NIKVYDIKIIPEGTTGKVAYKNQVLDLTIPIFNKGIFKNIGAVAGVLY 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D   ++K L  F+  +GRGK     +  G  T+ID+SYNANP S+K AI  L++I 
Sbjct: 281 HLGLDPIESLKVLKEFNQIQGRGK----IIKIGNLTIIDDSYNANPLSVKNAIETLNEIP 336

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  + VLGDM E+GE S+  H  +A+ +   +I +V+L G     +K  L    +V
Sbjct: 337 TVK----VLVLGDMLELGEESEKLHRSIAKEILKSHIDYVFLYGEETKYIKQELEGKKYV 392

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +      +   ++        V+VK S       +I  L  
Sbjct: 393 LH-TDKKEIANQLKKLENSSPTVLVKGSRGMKMEEVIEYLKN 433


>gi|300869356|ref|ZP_07113946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332655|emb|CBN59144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oscillatoria sp. PCC 6506]
          Length = 453

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 125/467 (26%), Positives = 200/467 (42%), Gaps = 28/467 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + +         +    GI+ D+R++   E F A++G ++DGH F+  A++ GA
Sbjct: 6   TPAQLAEILAVAPPVQSDRAIATGIATDTRNLKGGEVFVALRGENFDGHKFVAKALELGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV+    +    L +P+  V+D L A   +A   R +    +IA+TGSVGKTTTKE+
Sbjct: 66  IAAVVDRSWESE--GLDLPLLRVEDTLKAYQAIARWWRDQFNIPVIAVTGSVGKTTTKEL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++         +YNN IGVP TL  +     + + E+GM   GEI FLT + RP 
Sbjct: 124 IAAVLTTKGNVLKTQLNYNNEIGVPKTLLELSESHHYAVIEMGMRASGEIAFLTQIARPT 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT +  AH+      E IA AK E+   +       LN D++      AK       
Sbjct: 184 IAVITNVGTAHIGRLGSREAIAQAKCELLAEMPNDSIAILNSDNALLMATAAKVWQGETL 243

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                           +      +   +  +   S+ +     G H A N L  L +  +
Sbjct: 244 ------------AYGLEKGNLCPELIDDRTISIDSINLPLPLPGRHNAVNYLAALAVAKV 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +     LSV  P        +         ++DE+YNA   SM   I+ L  ++ 
Sbjct: 292 LGVSWEPLKGGLSVDLPSGRA----KRYELANDIVILDETYNAGLESM---IAALKLLAD 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALP---- 419
               R IAVLG M E+GE S  FH  + E     N+  +++        A+         
Sbjct: 345 TPGKRHIAVLGTMKELGERSLEFHRQVGEKARELNLDALFILADFEEASAIATGAAGLPF 404

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +   +  + +   +Q  +  GD ++ K+S+S    R++ LL+
Sbjct: 405 VELGDITQVDAREMMAKRLQEFVKAGDRILFKASHSVELNRVVQLLV 451


>gi|261367515|ref|ZP_05980398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282570296|gb|EFB75831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 453

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 128/443 (28%), Positives = 195/443 (44%), Gaps = 16/443 (3%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                ++ +  DSR + P   F    G   DGH F   A Q GA  ++ N  +       
Sbjct: 16  AEPVSIHAVVTDSRKVEPGCVFVCFPGERVDGHTFAAGAYQNGAAYIIANHPVDGVPADR 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           ++    V D   A+ ++A   R+     II +TGSVGKTTTKE     LS+   T    G
Sbjct: 76  TV---VVPDSALAMVRMASNYRMLFSPRIIGVTGSVGKTTTKEFCYAVLSAFGNTLKTEG 132

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IGVP TL R+    ++ + E+GM H GEI  LT  VRP   +IT I  +HL N  
Sbjct: 133 NQNNEIGVPNTLFRLESATEYAVVEMGMDHAGEIERLTRCVRPSAGIITMIGVSHLENLG 192

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E I  AK EI  GL     + LN D+     L   +   G      FG  + AD +  
Sbjct: 193 TRENILKAKMEICAGLPDGAPLVLNADND----LLPTAQVPGRLRAVWFGIEQEADVRAE 248

Query: 262 KWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             +  ++ +    V  +     V     G H   + L      + L  D     KALS +
Sbjct: 249 NIQTGAQGTTFTLVDREYGRFPVSIPTAGLHTVYDALSAYAAATRLGLDPANCAKALSRY 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                     +  + +G  T+I++ YNA+P SMKAAISVL  +    +   IA+LGDM E
Sbjct: 309 Q----TTGMRQHIVERGGVTVIEDCYNASPDSMKAAISVLKALPNKRK---IALLGDMLE 361

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQS 439
           +G+ S+  H    E ++   +  +   G     + +A   R +   + +    +   +Q 
Sbjct: 362 LGDASEEGHRHTGEWVAEAGVDTLIAYGPRSAVMAEAAQARGVTTVHCQKAQEVLQCLQQ 421

Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462
            +  GD ++ K+S++     L+ 
Sbjct: 422 FVQPGDALLAKASHAMKLEDLLQ 444


>gi|238797710|ref|ZP_04641205.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
 gi|238718462|gb|EEQ10283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia mollaretii ATCC 43969]
          Length = 450

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 205/469 (43%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     ++   QG          +  ++ID+R +     F A+KG  +DGHDF    
Sbjct: 1   MSELLNAEFIVSDKQG------DNIEITEVTIDTRKVTAGCLFVALKGERFDGHDFAED- 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    + +P   V D   AL + A   R +  A ++A+TGS GKT
Sbjct: 54  ----AVAAGAGALLVSKRLLVGVPQLVVKDTRLALGQFAAWIRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMTAAILRECGNVLYTAGNFNNDIGVPLTLLRLTAEYDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        +++ DF     +   + +   +     ++ +     G H   N L   
Sbjct: 230 NKRVWRFG-LQAAEDIDFYATDVQITPQATHFTLHSPFGTVTIELPLPGRHNIANALAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + AD+    + L       GR    + A       L+D++YNAN  SM AA  VL
Sbjct: 289 ALAMSVGADLSAVRQGLMQLQAVPGRLFPIQLATG---KLLLDDTYNANVGSMTAAAQVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+GE +   H  + E      I  V   G     L DA   
Sbjct: 346 AEMP----GYRVMVVGDMGELGETAIDCHRQVGEAAKQAGIDKVLSVGTLSQTLSDA--- 398

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S +  + +    L   +   L +  V  V++K S S     ++  L E+
Sbjct: 399 SGNGEHFQDKSALAARVSELLSEHPVITVLIKGSRSAAMEHVVRALQEK 447


>gi|119358489|ref|YP_913133.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355838|gb|ABL66709.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 472

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 194/458 (42%), Gaps = 15/458 (3%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G   GIV       + IDSR++     F A++G H DGH +I     KGA   +V    
Sbjct: 21  NGDVRGIVTDPV---VVIDSRAVVDGAIFVALQGEHTDGHQYIDEVFAKGAHWAMVKKAW 77

Query: 75  VASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             S G+ + P       V+D +  L +LA   R      +IA+ GS GKTTTKEM+   L
Sbjct: 78  YESEGAPAAPEGCGFLVVEDPVAGLQRLAAIYRQTFSIPVIAVGGSNGKTTTKEMVAAVL 137

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +        G+ NNH+GVPLTL ++       + E+G++H GE+  L  L RP   ++T
Sbjct: 138 GTGFTVQTSKGNLNNHLGVPLTLLQLRRQTGIAVVEMGINHPGEMELLLELARPTHGLLT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     +E +A+ +  +F  L++ G           + L  K  A G+   +++
Sbjct: 198 NIGHEHLEFLLNLEGVAAEETRLFRYLQQHGGTCFV----NADDLWLKEAAEGLTGSFTY 253

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G + ++    +      ++S                 + +    N++  L   ++ T   
Sbjct: 254 GTADDSQIACQARHIAVDRSGRVSFEFVSGGLSERIALHFIGKHNVINALAAAAVGTYFG 313

Query: 311 DTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +               R    + G   LI+++YNAN  SM+ AI  L  I     G
Sbjct: 314 LSLEQIKKGLEALRPSPGWKRLEVQDAGGVVLINDTYNANSDSMRLAIDALVDIP--CSG 371

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           ++IAVLGDM E+GE     H      +    I  ++  G H            H HY E 
Sbjct: 372 KKIAVLGDMLELGEAGIVEHEKTGRYIQQSPIDLLFTYGRHARLYGIEAGARCHGHY-EN 430

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              L   ++  +  GD V+ K+S S     ++  L++E
Sbjct: 431 RQKLLDELKMVVQPGDAVLFKASRSMRLELVVEALIKE 468


>gi|145637115|ref|ZP_01792778.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
 gi|145269769|gb|EDK09709.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Haemophilus
           influenzae PittHH]
          Length = 457

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVAEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLVGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|149006740|ref|ZP_01830426.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
 gi|147761655|gb|EDK68619.1| cell division protein FtsZ [Streptococcus pneumoniae SP18-BS74]
          Length = 457

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIKTAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|152979590|ref|YP_001345219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841313|gb|ABR75284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Actinobacillus succinogenes 130Z]
          Length = 480

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 141/499 (28%), Positives = 210/499 (42%), Gaps = 50/499 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L + + G  IG      V  +S DSR +     FFA+KG  +D HD+++ A
Sbjct: 1   MISLQT-KKLAEILNGRLIG-DETVTVETVSTDSRRVTQNGLFFALKGEKFDAHDYLVSA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV          +++P   V D   AL  LA   +       +AITGS GKT
Sbjct: 59  VEQGNTAVVVEHAC-----EVNVPQIVVADTRLALGHLAQWLKSELNPLTVAITGSSGKT 113

Query: 121 TTKEMLTIALSS------------------------IKKTYACIGSYNNHIGVPLTLARM 156
           T KEM    L                                  G++NN IGVPLTL R+
Sbjct: 114 TVKEMTASILQQTARKSAVKNTEVFFTGSNHGKANFADAVLFTQGNFNNDIGVPLTLLRL 173

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +  F + ELG +H GEI + T LVRP +A+I  +A AHL  F  ++ +A AK EI+ G
Sbjct: 174 QPEHRFAVIELGANHAGEIDYTTKLVRPDVALINNVAAAHLEGFGSLDGVARAKGEIYRG 233

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L + G   +N D  +  L   +    G +       +  AD+     +     S   +  
Sbjct: 234 LSEDGIAVVNSDCHYLSLWDKEI--AGHRMQSFSATNPEADYWAENIRMTESGSAFTLHS 291

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              S+++    +G H   N L    +   + A++      L    P +GR          
Sbjct: 292 PDGSIDISLPYLGAHNIDNALAATALAMNVGAELCDVKAGLEQRSPVKGRLFPIEP---C 348

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L+D++YNAN  S+K+AI VL     + E  RI  +GDM E+GE S+  H  +A   
Sbjct: 349 NNLLLLDDTYNANVDSLKSAIGVLK----NYEAFRILAVGDMAELGENSRECHRQVANYA 404

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETM----DGLFLFIQSSLVDGD-VVVV-K 450
              N+  V   G     +  A     +  +        + L   I   L +   VV++ K
Sbjct: 405 KSANLDCVACFGAETAVIAQA----CNGTHFTDKTVMANYLAAVIDEKLKNNQRVVLLAK 460

Query: 451 SSNSCGFYRLINLLLEEFP 469
            S S     +I +L  +F 
Sbjct: 461 GSRSQKMEDVIAILKRKFE 479


>gi|289167464|ref|YP_003445733.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
 gi|288907031|emb|CBJ21865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis B6]
          Length = 457

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVVTLSEKEIA------NHPYILVDDVLTAFQILAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTKYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D      L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVENYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDKDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVECLENEDK 457


>gi|260581817|ref|ZP_05849613.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
 gi|260095010|gb|EEW78902.1| UDP-N-acetylmuramyl pentapeptide synthase [Haemophilus influenzae
           NT127]
          Length = 457

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNIKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|295839428|ref|ZP_06826361.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
 gi|295827473|gb|EFG65415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Streptomyces
           sp. SPB74]
          Length = 473

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 201/476 (42%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P+  V G +  DSR++     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                  G V      V +   L +P   VDDV  AL  LA     R   T+IA+TGS G
Sbjct: 60  -------GAVGAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVKRLGTTVIAMTGSTG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   LS    T    G+ NN IG+PLT  R+  D    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTRDTRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L ++G   LN DD     +  +
Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +     FG++ +A+ +                L+  +         Y        
Sbjct: 233 TRARVLL----FGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEVTLRLYGEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     AL +   +     R          T+++++YNA+P S++AA+ 
Sbjct: 288 LAAAAVAHELGMPAEEIALGLNEARSLSRWRMEVTERPDGVTIVNDAYNASPDSVRAALR 347

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWL 407

Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +              +          ++  L  GDVV+VK+S + G  ++   LLE
Sbjct: 408 RMGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLVKASRAAGLEKVAQALLE 463


>gi|19553362|ref|NP_601364.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391001|ref|YP_226403.1| D-alanine:D-alanine-adding enzyme [Corynebacterium glutamicum ATCC
           13032]
 gi|21324932|dbj|BAB99555.1| UDP-N-acetylmuramyl pentapeptide synthase [Corynebacterium
           glutamicum ATCC 13032]
 gi|41326340|emb|CAF20502.1| D-ALANINE:D-ALANINE-ADDING ENZYME [Corynebacterium glutamicum ATCC
           13032]
          Length = 514

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 128/499 (25%), Positives = 203/499 (40%), Gaps = 45/499 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T  ++   + G   G       V+  +  DSRS+ P   F A+ G   DGHDF  
Sbjct: 1   MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97
            A++KGA  V+   +       + +P   V  V                       AL++
Sbjct: 60  TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSR 112

Query: 98  LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           LA           +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T 
Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLDQDGPTVAPPGSFNNELGLPHTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R   D  + + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI
Sbjct: 173 LRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 232

Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQ 269
                  +  G   LN DD F   +  ++ A  +      G++K +D+           +
Sbjct: 233 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYWATSISLDAVAR 292

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   +  +  S  V     G H   N L    I        +  +  L            
Sbjct: 293 ASFTLNTKDGSWPVTLQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMD 352

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSF 388
            +   +    T+I++SYNANP SM+A I+ L+  +    E    AVLG M E+G+ +   
Sbjct: 353 VKTRADGV--TIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEA 410

Query: 389 HIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           H +L   L+ YN+  +   G +       + A    +  H    +D     +   +   D
Sbjct: 411 HAELGAELAKYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDD 470

Query: 446 VVVVKSSNSCGFYRLINLL 464
           VV+VK+SN+   +R+   L
Sbjct: 471 VVLVKASNADRLWRVAEAL 489


>gi|304404006|ref|ZP_07385668.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
 gi|304346984|gb|EFM12816.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Paenibacillus curdlanolyticus YK9]
          Length = 465

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 117/469 (24%), Positives = 199/469 (42%), Gaps = 21/469 (4%)

Query: 14  IQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
             G         Q  ++GI+ DSR++ P + +  + G ++DGH+F   ++  GA   +  
Sbjct: 2   CGGTLANEQRDSQIAISGITKDSRAVEPGQLYVPLIGENFDGHEFAAQSLAAGAAGSLWE 61

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                       P+  V D L AL +LA A R      I+ ITGS GKTTTK++    L 
Sbjct: 62  EGCPVPDELAEAPLVLVPDTLSALQRLASAYREELNVRIVGITGSNGKTTTKDLTAAVLG 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I + +   G+ NNHIGVPLT+ ++   ++  + E+GMS  GEI  L+ +  P  A+IT 
Sbjct: 122 TIYRVHKTAGNLNNHIGVPLTILQLDETIETAVLEMGMSDFGEIELLSTIASPDAAIITN 181

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +  AH+        IA AK EI  GL   G +  N D+       A+        +  FG
Sbjct: 182 VGDAHMLQLGSRAGIAEAKLEIVAGLLPGGALVFNGDEPLLRERLAQIELPEGTELVPFG 241

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSME-------VVHHGIGYHMAQNMLMTLGIVS 304
            + +  +     +  S+ S  +V     S E       +     G H   N L  + +  
Sbjct: 242 AAADCQWSASNVQIGSDASAFDVVSPLLSAEEAEQLRGITLPVPGAHNVMNALAAIAVAY 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                       L+        G R +         +++++YNANP +++AA+ ++++++
Sbjct: 302 RFGVPAAQIRDGLAT---VTMTGMRIQPVDAFNGAKILNDAYNANPTAVRAAVDLVAELT 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------A 417
            +       VL DM E+G      H  +   ++      V   G     + D       A
Sbjct: 359 GYRRKW--VVLADMLELGPEEADLHRGIGAYVTPEKADAVLTWGPLAQYIADGAAVAFEA 416

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             R+  V + E  + L  +++  L   D+V+VK S      +++  L  
Sbjct: 417 AGRADDVRHFEDKEQLTAWLREQLHADDLVLVKGSRGMRMEQVVQALEN 465


>gi|239813922|ref|YP_002942832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
 gi|239800499|gb|ACS17566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Variovorax
           paradoxus S110]
          Length = 471

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 207/466 (44%), Gaps = 11/466 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T     Q I G  +       +  +  D+R++A  + F A+KG  +D ++F+  A  +
Sbjct: 2   MFTLAQAQQWIPGARLVGDGATAIARVHTDTRTLAEGDLFVALKGERFDANEFLADAKAR 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + +      + +  +    V D L AL  L    R +    +IA+TGS GKTT  
Sbjct: 62  GAVAAIAH----GGLEAAGLAGLEVPDSLAALGALGAGWRAQFDLPLIAVTGSNGKTTVT 117

Query: 124 EMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+   L + +     A  G++NN IGVPLTL R+       + ELGM+H GEI  L  +
Sbjct: 118 QMIAAVLVAFRGDRALATAGNFNNEIGVPLTLLRLRAKHQHAVVELGMNHPGEIARLAAI 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++      HL   + +E +A     +F  + + GT    + D F  L    +H 
Sbjct: 178 ARPTVALVNNAQREHLEFMATVEAVALENGAVFSFVPEDGTAVFPHGDEFAPLWNDMAHD 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +   +FG+ ++AD  L   +       + ++      +   H  G H   N L    
Sbjct: 238 GATRRCMTFGEHEDADISLVAAEWQQGAWQVRIRTPLGDFDAQLHIAGRHNVVNALAATA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAAISVL 360
                    +T  + LS F P +GR K     L  G   TL+D+SYNANP S++AAI VL
Sbjct: 298 CALATGIPPETIARGLSAFEPVKGRSKASAVLLPGGHSLTLVDDSYNANPDSVRAAIDVL 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G R+ VLGDM E+G  +  FH ++ +      I  V+  G        A   
Sbjct: 358 AALP----GPRLLVLGDMGEVGNRAPEFHAEVGDWARQRGIEAVYALGAETAHSIAAFDG 413

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  +   ++ L   + + L     V+VK S      R++  + +
Sbjct: 414 GDNGRHFADIEALGAAVLARLPQVGSVLVKGSRFMKMERVVQAIEQ 459


>gi|237755603|ref|ZP_04584218.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237692230|gb|EEP61223.1| udp-murnac-pentapeptide sythetase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 436

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 213/461 (46%), Gaps = 29/461 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + + G  + +V    +N   IDSR +   + F  +KG + DGH +I  A++KG
Sbjct: 1   MDLVQLKKIVNGEFLNLVKNKKINRFEIDSRRVKEGDFFIPLKGQNADGHQYIEDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +    G        V D   AL ++    R + +  +I ITG+ GKT+TKE
Sbjct: 61  AVGYFSEKPLNFKNG------ILVKDTYQALVEVGKHKRNQVRV-VIGITGTSGKTSTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS++  TYA  G+YNN IGVPLTLA +P   DF I E+G   +G+I +L  +V  
Sbjct: 114 LMNFVLSNLASTYATQGNYNNEIGVPLTLANIPESTDFAIIEMGAGKVGDIDYLGKIVNQ 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+ ++   H+  F   E +   K EI          F   + S       K +    
Sbjct: 174 DISVLVSVGHGHVEKFGSFENVIKGKGEI----------FNCGNYSVLPSELKKFYNPK- 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G+  + D +++  K   + +   ++ +   +E+        + +N+    G++ 
Sbjct: 223 -NPITYGE--DGDIEIKDIKIVKDGTVGIIKYKNDKIELKIPVYNIGVFKNIGAVAGVLY 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D    ++ L  F     RG      +  G FT+ID+SYNANP S+K AI +L+ + 
Sbjct: 280 HLGYDPIKNLEVLKDFKSSSQRG----EIIKIGNFTIIDDSYNANPLSVKNAIEILNSM- 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              EG +I VLGDM E+GE SQ  H ++ ++L+   I ++ L G     + + +     V
Sbjct: 335 ---EGFKIFVLGDMLELGEYSQELHREVGKLLNASYIDYIMLYGNETKYVFEEIDDKSRV 391

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + +  D +   I        VV+VK S       +I  L 
Sbjct: 392 KHFDNKDDIAEDILKFSDFQPVVLVKGSRGMKMEDVILKLR 432


>gi|326779862|ref|ZP_08239127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660195|gb|EGE45041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 473

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 198/476 (41%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G S  I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQSYDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V+DV+GAL  LA A   R   T++ +TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVEDVVGALGALARAVVERLGTTVVGLTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+P+T        +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRKGPTVWTPGSLNNEIGLPVTALTATAATEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + ++
Sbjct: 173 ADLTPPRIGLVLNVGSAHLGEFGSREAIAQAKGELVEVLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +     FG++  AD +  K +   +               V   +          
Sbjct: 233 TRARVLL----FGEAPEADVRGEKVRMTPDGRPAFELHTPTGCSDVTMRLY-GEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTIVNDAYNANPESMRAALR 347

Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|329124138|ref|ZP_08252685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467563|gb|EGF13061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 457

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 212/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLLPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|225175501|ref|ZP_03729495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168830|gb|EEG77630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 461

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 129/479 (26%), Positives = 201/479 (41%), Gaps = 38/479 (7%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL----- 58
            T  ++ +A+ G           +  +SIDSR I P + F  + G H DGH FI      
Sbjct: 1   MTLREISEAVGGKLPAAGDLDKKIGRVSIDSRDIGPGDFFVPLAGEHTDGHRFIAAAAEK 60

Query: 59  ------HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
                  A  K                   + V  V+D   AL  L+   R + +  ++A
Sbjct: 61  GAAGCFAAFSK------------NVTHPEGMTVISVEDPEQALQDLSAFYRRKFQLPVVA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGSVGKTTTK+M+  ALS   KT    G+ NNH+GVPL L R+    +  + E+GMS  
Sbjct: 109 VTGSVGKTTTKDMIAAALSPELKTLKTEGNLNNHLGVPLMLTRLDSTYEAAVLEMGMSGY 168

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  L  P +AVIT I  +HL      E IA AK E+   L   G   +N D+   
Sbjct: 169 GEIDLLAKLALPTVAVITNIGESHLEMLGSREGIARAKCELLGHLAADGVAVVNADEP-- 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG-IGYH 291
             L           + +FG  ++A  +              ++ +G +   V     G H
Sbjct: 227 --LLVPHIKGLGCRVITFGFDEHATVRCTDIINDEAGKRAIIEQEGFAPLEVVPPLPGRH 284

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N++  L +  +L  D     +  S        G R           +I+++YNA+P 
Sbjct: 285 NIYNLMAALAVGRLLGVDDSVLTEGFSR---VRLSGMRLETVTTPAGIQVINDAYNASPT 341

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           ++ AA  VL++++        AVLGDM E+G+  +  H      ++ +N+S + + G   
Sbjct: 342 AVSAAFDVLAELAKDAAR--FAVLGDMLELGDWEEEGHRQTGRQVARHNLSGLLVLGERA 399

Query: 412 LALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + D    +      V+  E+       I      GD V++K S       ++ +LLE
Sbjct: 400 QLIADGAVAAGYPPQRVYRCESHAQAAQVIAKIARAGDWVLLKGSRGMRMEDVLAVLLE 458


>gi|303255991|ref|ZP_07342019.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
 gi|302597050|gb|EFL64168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS455]
          Length = 456

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +    +       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKRVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   KA         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHKAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|149001954|ref|ZP_01826908.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
 gi|147759763|gb|EDK66753.1| cell division protein FtsZ [Streptococcus pneumoniae SP14-BS69]
          Length = 457

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L   + +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|269960237|ref|ZP_06174612.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
 gi|269835044|gb|EEZ89128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi 1DA3]
          Length = 454

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 127/472 (26%), Positives = 203/472 (43%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +     G  +G      +  +S D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MITV-TLSQIADITGGELVGN--DLSIESVSTDTRAIEQGALFVALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GAG ++V         ++++P   V D   AL ++A       +   +AITGS GKT
Sbjct: 58  VESGAGALLVQK-----TLNVNVPQVVVADSKVALGQVAAWVHQACQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHVGEIEYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +          
Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGEAKWDQVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +ADF        +            + + +   +G     N+   +
Sbjct: 233 DKKVIT--FSQNNTDADFYASNIVLNAAGEASFDLHIAATSQEIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +  +          R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALQFGATLEEVRTGLKHLNKVKGRVEVEELSDNIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S      +G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 SAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAGPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|295135754|ref|YP_003586430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
 gi|294983769|gb|ADF54234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Zunongwangia profunda SM-A87]
          Length = 430

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 197/437 (45%), Gaps = 20/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+S D+R+I P   FFA+KG +++G++F   A+ KGA + +V+ +  A           
Sbjct: 14  SGVSTDTRNIKPNSLFFALKGENFNGNEFAEEALNKGAEVAIVDEEAYAKDQDN---YIF 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL +LA   R      ++AITGS GKTTTKE++   L+   KT +  G+ NNHI
Sbjct: 71  VEDCLDALQQLATFHRHFLGIPVLAITGSNGKTTTKELINAVLTKKYKTISTTGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL RM    + G+ E+G +H GEI FLT +  P    IT    AHL  F GIE + 
Sbjct: 131 GVPLTLLRMDETTEVGVVEMGANHQGEIEFLTEIALPDYGYITNFGKAHLEGFGGIEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++  L+    +     D   +             +++FG S+ A   +      +
Sbjct: 191 KGKSELYTHLKNHKKLLFLNLDDEIQ-----QRQDSYSHVFTFGSSEKAAVSIDYTISQN 245

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              +               G            L I            +A+  + P   R 
Sbjct: 246 GPEYASFTYNNDVFNTQLTGQYNAYNAAAA--LTIGLYFKVPFKAIKEAIKEYSPSNNRS 303

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N    TL+ ++YNANP SM ++I   S +  +    +  ++GDM E+G+ S+ 
Sbjct: 304 QIQKTKNN----TLLLDAYNANPTSMGSSIINFSNL--NTPLSKTLIIGDMLELGQYSKE 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + E+ +   + +V+L G H                 +    L  F+ ++ ++   +
Sbjct: 358 EHQSIVELCNSKGLKNVYLVGKHFKET----STPEEYQKFDNTTELKTFLTANPINNSYI 413

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      ++I  L
Sbjct: 414 LIKGSRGIALEKIIENL 430


>gi|212715554|ref|ZP_03323682.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660921|gb|EEB21496.1| hypothetical protein BIFCAT_00452 [Bifidobacterium catenulatum DSM
           16992]
          Length = 491

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 146/497 (29%), Positives = 213/497 (42%), Gaps = 35/497 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  +                DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLVAGTAAANTPVATSAFTDSRQIVEGSVFIAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIA 112
            H   +GA   +V+ +    I    +P   V+D + AL  LA     R     +  T++ 
Sbjct: 60  PHVGAQGAVAAIVDHE----IADADVPQIVVEDTVLALGLLAKHNIERRRALGTPFTVVG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   LS +  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLSHMGSTVAPVGSFNNEIGLPLTSLKVNAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIIHGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + A +    +        G +     Q  +  +    S+      G+  EV     G 
Sbjct: 236 AAMSAFAPGDVMWFGLPNGDGGNPAITAQHVRCDELDHPSFTLKNGDGEHAEVTLGICGQ 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNAN 349
           H   N L    +   L   +D    ALS                 Q   FTLID+S+NAN
Sbjct: 296 HNVMNALAAASVAMRLGMSIDEVASALSDVTTISPHRMAVSTVNKQETSFTLIDDSFNAN 355

Query: 350 PASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           P SMKA +  L +     E +    AVLG M E+G   +  H+ +        +  +   
Sbjct: 356 PDSMKAGLDGLLRWKAGSESQPFRIAVLGTMLELGPDEKDLHVGIGRYALEGGVDALLTV 415

Query: 408 GFHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNS 454
           G    A  DAL             + HV +   +D     +        G VV++K S++
Sbjct: 416 GSASDASLDALAGAMADGASLAGDASHVDWVHDIDEADRLVTRLAVEHPGAVVLLKGSHA 475

Query: 455 CGFYRLINLLLEEFPAI 471
            G       L E + A+
Sbjct: 476 SGLS----ALAERWQAL 488


>gi|301155882|emb|CBW15351.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus parainfluenzae T3T1]
          Length = 456

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 137/476 (28%), Positives = 205/476 (43%), Gaps = 33/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +     G   Q  V  I+ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-QQLAQILNADLTG-DEQAVVENINTDTRRSVSNSLFFALKGEHFDAHQYLDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +VV          ++ P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VEQGAAALVVQQANTE----IATPQLVVADTRLALGQLAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L         +    G++NN IGVPLTL R+     F + ELG +H GEI 
Sbjct: 115 TVKEMTASILQQTAGNPEAVLFTNGNFNNDIGVPLTLLRLTEQHKFAVIELGANHQGEID 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + THL +P  A++  +A AHL  F  IE +A AK EI+ GL + G   +N + ++ EL +
Sbjct: 175 YTTHLAQPEAALVNNVAAAHLEGFGSIEGVARAKGEIYRGLTQNGVAIINSEHNYIELWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  +  I+           D++    K     S   +     S+E+    +G H  +N 
Sbjct: 235 KEIGSHAIQ------YFNGRDYKAENVKHSPNGSTFTLVSPKGSIEINLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S++AA
Sbjct: 289 LAATALAMNVGASLADVKAGLEHRSQVKGRLFPIQVNEN---LLLLDDTYNANVDSLQAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL          RI ++GDM E+GE S   H  + E      +  V   G     + +
Sbjct: 346 IDVLKGYDA----FRILLVGDMKELGEDSLKCHQQVGEHAKQAKLDLVLSYGIESAVISE 401

Query: 417 ALPRSIHVHYSETMDG----LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
           A    +   +              I+  L +    VV+ K S S      I  L +
Sbjct: 402 A----VLGKHFTDKAELTAYALDIIKQKLQENQKVVVLAKGSRSMKMEETIYSLKD 453


>gi|319776625|ref|YP_004139113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
 gi|317451216|emb|CBY87449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae F3047]
          Length = 457

 Score =  240 bits (611), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 132/473 (27%), Positives = 210/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  VSQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE   + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENFLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+         E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVSGKHFTDKVEMVDFLVPLIETQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|148993758|ref|ZP_01823185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|147927714|gb|EDK78738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP9-BS68]
          Length = 457

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 199/475 (41%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   ++T +  AHL+ F    EIA  K +I +G+          D    + L        
Sbjct: 176 PKTVIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLFLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  +         ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAVNGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|296111232|ref|YP_003621614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295832764|gb|ADG40645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 443

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 208/472 (44%), Gaps = 35/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  ++   +   +         Q  V G++ +SR +   + F A+     DGH ++  A
Sbjct: 1   MN--YSIKKIGAVLSA-VTQGNDQIKVTGVAFNSRDVKIGDLFVALVADS-DGHRYLQDA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+ +   S     +P   V D L AL +LA   R +    +IAITGS GKT
Sbjct: 57  LDRGAAAVLVDDNHAISEK---LPAIIVKDTLTALQQLASYYRQQINPKVIAITGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    +S++ KT+    ++NN IGVP+TL  MP D +  + ELGM   G++  L+ 
Sbjct: 114 TTKDMTAAIVSTVFKTFKTPNNFNNEIGVPMTLLSMPEDTEVLVVELGMDRSGQLTMLSQ 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA+IT I  AH+  F     IA AK EI  GL+  G +F+ +D+           
Sbjct: 174 LVQPDIAIITMIGEAHIEFFKTRANIAKAKLEITNGLKADGVLFIPFDEPLL-------- 225

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                             ++  + Q  +             +     I      N++  L
Sbjct: 226 -----------TQAVIMQRVVWFGQNIDAVETASDHTNFIYKNTRFAIPLIGGYNIMNAL 274

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +S          KA+      +    R    +      LI + YN+NP ++ A ++ L
Sbjct: 275 AAISAGILLHIDLKKAVQALQTFDLTKNRTERLVTARGVILISDVYNSNPTAVAAVLATL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKD 416
             I       +  VLGDM E+GE +   H  L + +   N+  V+L G     ++  +  
Sbjct: 335 KAIPAQ---HKYVVLGDMLELGEQANELHAGLGQKVLDANVDGVYLVGKLFNQNMAPMLK 391

Query: 417 ALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S  VH   T  +  L L +Q+    GDV+++K+S+      ++N L+E
Sbjct: 392 TQFESSDVHQYTTDQLAKLTLDLQTLGEAGDVILLKASHGIHLENVVNALIE 443


>gi|301794651|emb|CBW37102.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV104]
          Length = 457

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGVR-DGHDFIERAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGVQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|119897171|ref|YP_932384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
 gi|119669584|emb|CAL93497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Azoarcus
           sp. BH72]
          Length = 478

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 200/469 (42%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D  +A+  H          + +  DSR I P + F A++G  +DGH+F+  A++ 
Sbjct: 9   MMSLLDASRALSAHHAVAQGAVRFSSVGTDSRGIIPGQLFVALRGERFDGHEFVAAALKA 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+       G  S+P+  VDD   AL  LA   R R    +I +TGS GKTT K
Sbjct: 69  GAAAAMVDARGFTEFGDASLPLLVVDDTRLALGTLAATWRARFAIPVIGVTGSNGKTTVK 128

Query: 124 EMLTIALSSIKKTYACIG--------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM    L +  +              + NN IG+PLTL  +       + E+GM+H GEI
Sbjct: 129 EMCAEILRAQARRDGAGDEAVLATRGNLNNDIGLPLTLLELRDHHRAAVIEMGMNHPGEI 188

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT L RP +A++     AHL     + E+A  K  I++GL   G   +N DD      
Sbjct: 189 AYLTGLARPTVAIVNNAQRAHLQGLGTLGEVAQEKGAIYQGLGAAGVAVVNADDPHAGYW 248

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +    I    SFG  + AD    +       S + +       EV     G H A N
Sbjct: 249 RDLNAGRPI---VSFGIDQPAD-VAGECTLHGLGSQLHIAAPQGRGEVELQVPGLHNASN 304

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L             + A++ L+++    GR    +         ++D+SYNANP S++A
Sbjct: 305 ALGAAAACLAAGVVFEAALEGLALYEGTRGR---LQRRSGPQGAVILDDSYNANPDSVRA 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+       G    VLGDM E+G+ S   H ++        I  ++  G       
Sbjct: 362 GIDVLASTP----GHTFLVLGDMGEVGQTSAQVHDEIGGYAKSKGIDGLYALGEASAIAV 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    H+ ++++ L   +   L    VV+VK S      R+ + L
Sbjct: 418 RNFGEG--AHHFDSVEALVAALAPRLDADAVVLVKGSRFMKMERVADAL 464


>gi|168493571|ref|ZP_02717714.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|183576262|gb|EDT96790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CDC3059-06]
 gi|332199699|gb|EGJ13774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 457

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGQDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|307707044|ref|ZP_07643841.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
 gi|307617570|gb|EFN96740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus mitis SK321]
          Length = 457

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + GA
Sbjct: 5   IHEVAQVVGAKNDISIFEDTQLEKTEFDSRLITTGDLFVPLKGAR-DGHDFIETAFENGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK+M
Sbjct: 64  AVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  P 
Sbjct: 118 LAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAHPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++T +  AHL+ F    EIA  K +I +G+     +    D    + L         K
Sbjct: 178 TAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPVVEDYL------PTDK 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG+    +           +  +  +    +  +     G + A N ++   +   
Sbjct: 232 KVVRFGQGAELEIT----DLVERKDSLTFKANFLNQALDLPVTGKYNATNAMIASYVALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   +A         R +  + A       ++ + YNANP +MK  +   S I  
Sbjct: 288 EGVSEEQIRQAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +     
Sbjct: 345 NEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFPIG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 405 HVYYFKKTEDRDQFEDLVKQVKESLGTNDQILLKGSNSMNLAKLVESLENETK 457


>gi|91762841|ref|ZP_01264806.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718643|gb|EAS85293.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 948

 Score =  239 bits (610), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 137/451 (30%), Positives = 227/451 (50%), Gaps = 8/451 (1%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N    +     
Sbjct: 505 NSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK-- 562

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I        
Sbjct: 563 ----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPK 618

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S+NN  GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF 
Sbjct: 619 SFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFK 678

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            I ++A AK+EI   ++  G + LN DD F+ L K  +    I       K+K+A+  L 
Sbjct: 679 NIHQVALAKSEIINNIKTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLE 738

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K  +   +  + V +  K +      I  +  +N+L T+ I+SI              + 
Sbjct: 739 KIVKEKSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYE 798

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GRG   +  LN+    ++DESYN+NP S+K+AI    ++      +   +L DM E+
Sbjct: 799 IAKGRGDIIKVKLNKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKK-KLILSDMLEL 857

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++ L
Sbjct: 858 GNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDL 917

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE-EFPAI 471
            + D +++K SNS G   L+N L   +F A+
Sbjct: 918 NNNDYLMIKGSNSTGLNNLVNKLKTGKFNAL 948



 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 152/453 (33%), Gaps = 38/453 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                G+S +S        FFAI+G   DG  FI HA++KGA +++             +
Sbjct: 16  NHQFGGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQKFEGIKNK--V 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------------ 131
                 +V   L++L+   +      +IA+TG+ GK++  +     L+            
Sbjct: 74  LFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTL 133

Query: 132 --SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               K +   + +          +             +  S  G  +     ++ +  + 
Sbjct: 134 GVKTKNSLKKVSNTTLDPIKLSKILNNLKKQKIDNVIMEASSHGLKQNRLDGLKFNTTIF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL       +   +K  +FE  L+  GTI  +     ++ LK  S    +    
Sbjct: 194 TNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQA 253

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               +   D      +   ++  +E++   K  ++  + IG    +N+ M +        
Sbjct: 254 LSKSNNGIDIY--SHQFRDDKQIVEIKYNQKHYKLQINLIGKIQLKNLFMAMLAAKKSNL 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D  +K  S      GR ++     N     L    Y   P ++K  ++ L +      
Sbjct: 312 KFDQIVKLASKVKSVIGRFEKIGTLKNNSKVILD---YAHTPDALKTCLTNLKE--QFEN 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI- 422
            R   V G     G         +   ++      V+L+       +   ++ A+ ++I 
Sbjct: 367 KRIFIVFG----CGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIKKTID 422

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V    +           L  GD++V+  K 
Sbjct: 423 KSKVFEISSRSKAIHKAILDLKTGDILVIAGKG 455


>gi|86604807|ref|YP_473570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
 gi|86553349|gb|ABC98307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-3-3Ab]
          Length = 445

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 195/470 (41%), Gaps = 30/470 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T   +   +Q    G        V  +  DSR + P   F A++G  +DGHDFI  A+
Sbjct: 1   MLTLQTVADLLQAPLQGDPHLLGLPVQALCTDSRRLQPGSVFVALRGERFDGHDFIPQAL 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KGA  V+    +         P F V D L A  ++A A R +    ++AITGS GKTT
Sbjct: 61  SKGAVAVISQRPVEG-------PHFQVPDTLTAYQRIARAWREQFSIPVVAITGSAGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML  ALS          ++NN IGV  TL R+  +  F + E+ M   GEIR L  +
Sbjct: 114 TKEMLAAALSRYGSVLKSEANHNNDIGVAQTLLRLQPEHQFAVLEMAMRGPGEIRRLAQM 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A+IT I  AH+      E IA+AK E+ +     G   LN +D       A   +
Sbjct: 174 ARPTHALITHIGTAHIGRLGSREAIAAAKCELLQ-ELGQGIAVLNGEDPLLLATAASLWS 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T          ++  +      E   + V L G+   +                 G
Sbjct: 233 GKTLTYGLAQGDLRGEWDPQAQTVTVEGLTLPVPLPGRHHALNWM--------------G 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +++ + +      +             R R     G   + DE+YNA+P +M   I+ L 
Sbjct: 279 VLAAVRSLGLNWERLQEPLDLPLPLEGRNRHLKLAGDVEIWDETYNASPEAM---IAALH 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDALP 419
            ++     RR A+LG M E+GE +   + ++    +   +  VWL      +  L D   
Sbjct: 336 LLAQTAGKRRWAILGPMRELGEHAPQLYAEVGRAAASLRLERVWLLDPDGEMQPLVDE-K 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +  V   E    L   +Q  +  GD ++ K++ +    R+++  L+ + 
Sbjct: 395 PAAEVERFEEASALVEGLQQQVRAGDRLLFKAARAVELERVLHRFLQAWQ 444


>gi|322375679|ref|ZP_08050191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
 gi|321279387|gb|EFX56428.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. C300]
          Length = 457

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++         P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVE------GYPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSKLAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPDSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+  + +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGADLEVT----DLIERKDSLTFKANFLGQALDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 LANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|328956667|ref|YP_004374053.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
 gi|328672991|gb|AEB29037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Carnobacterium sp. 17-4]
          Length = 465

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 219/472 (46%), Gaps = 18/472 (3%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++  A+   +         +  ++ D+R +     F  + G + DGH+FIL 
Sbjct: 2   MISL-TVKEIAMAVGAINDTSKWSDREITSVNFDTRKLVKDSLFVPLLGNN-DGHNFILK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           AV+ GA + + +  +      L    P+  V+D L AL  LA     +    ++ ITGS 
Sbjct: 60  AVENGAAVSLWSKPLKDLPLELENEFPIVQVNDTLKALQDLAKFYLTKVNPKVVGITGSN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK+M    LSS  + +   G++NNHIG+P+T+  MP++ +  I E+GMS  GEI+ 
Sbjct: 120 GKTTTKDMADAVLSSQYRVHKTQGNFNNHIGLPITILEMPIETEVVILEMGMSRAGEIKV 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ L +P +A+IT I  +H+  F     IA AK EI  GL++ G +    ++    LL+ 
Sbjct: 180 LSDLAKPDVAIITMIGESHIEFFGSRAGIADAKMEICSGLKENGVLIYPGEEP---LLQE 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   L    + +FG S   D           Q+   V  +   + V    +G +   N L
Sbjct: 237 RVAVLKGSQLKTFGTSPENDLYPLNIDAQMNQTS-FVTNERPDLVVSLPVLGTYNVNNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L   ++ +   L+ F   + R             ++++++YNANP +MKA +
Sbjct: 296 AALMAGMTLGISIEKSAPKLAQFQLTKNR---TEWLKGINESSILNDAYNANPTAMKAVL 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              S  +    G++I VLGDM E+GE S   H+ + + L    I  V L G  +  L + 
Sbjct: 353 DNFSTFT--NTGKKIVVLGDMLELGEQSTQLHLSVKDSLDPTQIEKVVLYGEQMNVLYEV 410

Query: 418 LP---RSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L       ++ Y       L  F++  +  GD +++KSS       ++  L 
Sbjct: 411 LKGKFDEENLSYFTGAKEPLIQFVKKQIEHGDYILLKSSLGTDLLSVVRALQ 462


>gi|145296124|ref|YP_001138945.1| hypothetical protein cgR_2044 [Corynebacterium glutamicum R]
 gi|140846044|dbj|BAF55043.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 514

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 127/499 (25%), Positives = 202/499 (40%), Gaps = 45/499 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T  ++   + G   G       V+  +  DSRS+ P   F A+ G   DGHDF  
Sbjct: 1   MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97
            A++KGA  V+   +       + +P   V  V                       AL++
Sbjct: 60  TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHDPDGHGAAVVEALSR 112

Query: 98  LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           LA           +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T 
Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R   D  + + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI
Sbjct: 173 LRCTTDTKYLVAEMSARGIGHIKHLTEIAPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 232

Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQ 269
                  +  G   LN DD F   +  ++ A  +      G++  +D+           +
Sbjct: 233 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFSTDAGQANKSDYWATSISLDAVAR 292

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   +  +  S  V     G H   N L    I        +  +  L            
Sbjct: 293 ASFTLNTKDGSWPVALQVFGEHQVANALAAAAIAMEAGVAPELVVAGLEAHSAASAHRMD 352

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSF 388
            +   +    T+I++SYNANP SM+A I+ L+  +    E    AVLG M E+G+ +   
Sbjct: 353 VKTRADGV--TIINDSYNANPDSMRAGIAALAYTASGRSEATSWAVLGQMGELGDDASEA 410

Query: 389 HIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           H +L   L+ YN+  +   G +       + A    +  H    +D     +   +   D
Sbjct: 411 HAELGAELAKYNVQELVAVGENPNCAALAESAASLGVSTHVVSDVDAALELLAGHIKRDD 470

Query: 446 VVVVKSSNSCGFYRLINLL 464
           VV+VK+SN+   +R+   L
Sbjct: 471 VVLVKASNADRLWRVAEAL 489


>gi|319938753|ref|ZP_08013117.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811803|gb|EFW08069.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 456

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 212/473 (44%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            TF+++   ++    +   P      +  DSR I   + FF +KG   DGH FI+ A + 
Sbjct: 3   LTFYEVASVLKAQNDVHQFPDCTFGKVEFDSRLIGEGDLFFPLKGAR-DGHGFIVTAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   VD+VL AL +LA     + K  + A+TGS GKTTTK
Sbjct: 62  GAAATLSEKELD------DYPYILVDNVLAALQRLAQYYLEKMKVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I  L+ + +
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHMGDIHLLSTIAQ 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AHL  F    EIA  K +I +G++    + +  D    + L ++ + + 
Sbjct: 176 PKVGIVTLIGEAHLEFFKSRYEIAKGKMQIVDGMKDGTLLVVPADKIINDFLPSQLNVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D  +   K    +  +  +       +     G + A N ++   + 
Sbjct: 236 ----------FGPDEDIFLTKLEERKDSLSFETNFLDNAIDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  D   KA +       R +  +         ++ + YNANP +M+  +   S I
Sbjct: 286 LKEGVTQDKIQKAFATLELTRNRTEWKKAKNGAD---ILSDVYNANPTAMRLILETFSTI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALP 419
             + +GR++AVL DM E+G  S+  H  +   L+   +S ++L G  + AL    K+  P
Sbjct: 343 PFNEKGRKLAVLADMKELGVDSKQMHSAMITSLNPEILSEIFLYGEDMAALFAYAKEIFP 402

Query: 420 RSIHVHYSETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++ +  +      L   ++ +L   D +++K SNS     L+  L  +
Sbjct: 403 PGKAHYFVKNAEKDQFSDLVKAVKEALKPTDQLLIKGSNSMNLASLVEKLEND 455


>gi|237650676|ref|ZP_04524928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237822434|ref|ZP_04598279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|332074005|gb|EGI84483.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 457

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENETK 457


>gi|23098922|ref|NP_692388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Oceanobacillus iheyensis HTE831]
 gi|22777150|dbj|BAC13423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase (EC 6.3.2.15)
           [Oceanobacillus iheyensis HTE831]
          Length = 455

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 229/467 (49%), Gaps = 17/467 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+T   L +    H   I     +  ++ D+R  +    +  I G  +DGH+FI  A++ 
Sbjct: 2   LFTVQWLAELFPKHQGKISTDITIQEVTRDTREPSSNSLYIPIVGERFDGHNFIFDAIKN 61

Query: 64  GAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA   + +  +   S    S PVF V+D + A+ +LA +       T++ +TGS GKTTT
Sbjct: 62  GAIATLWDKSIPLPSEWDNSFPVFFVEDTILAMQQLANSYLRSVNPTVVGVTGSNGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++T  + +  KT A  G+ NNHIG+PLT+  M  D +  + E+GMS  GEI  L+ + 
Sbjct: 122 KDLITSVVKTSYKTTATQGNLNNHIGLPLTILSMQPDTEVLVLEMGMSQFGEIELLSKIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   VIT I  +H+ N    + IA AK EI EG++  G +F++ D+    LL  ++  +
Sbjct: 182 EPDYTVITNIGESHIENLGSRKGIAKAKLEIIEGIKSNGNLFIDDDEP---LLAKENIDM 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I   G +K +D  +   K   +++  EV  +        + +G H A+N    + I
Sbjct: 239 DDSQIIGIGFTKESDINISNVKVHPDRTTFEVTDKPYH----VNLLGEHHAKNAAFAISI 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    A +     E  G R+          +I+++YNA+  SMKA+I V+ +
Sbjct: 295 GKALNISHENIQLAFNK---LEVTGMRFELETGINGVHIINDAYNASATSMKASIQVVKE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           +   G   ++ VLGD+ E+G  S+ +H  +AEV+    IS ++  G     + D + +  
Sbjct: 352 M--EGFQNKVLVLGDILELGTYSEHYHRSIAEVIDSR-ISEIYTYGEQAFYIYDEITKQH 408

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             ++VHY +  + +   ++  L +  +++ K+S    F   I  L +
Sbjct: 409 PKVNVHYIKQREDVVPSLKEHLNNQTLILFKASRGMKFEMFIKELQQ 455


>gi|71082737|ref|YP_265456.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061850|gb|AAZ20853.1| UDP-N-acetylmuramoylalanyl-D-glutamate [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 948

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 136/451 (30%), Positives = 226/451 (50%), Gaps = 8/451 (1%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +   SI+S++I   + FFAIKG + DG+ ++  A Q GA LV+ N    +     
Sbjct: 505 NSNIKIKNASINSKTIKKNDIFFAIKGNNKDGNLYVNEAFQNGASLVIANNQKKSKKK-- 562

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VDD L  L + +   R    + II+ITGS GKT+ KE+L   LS I        
Sbjct: 563 ----IVVDDTLQLLTEASSKLRENLSSKIISITGSCGKTSLKELLGKTLSKISNVTYSPK 618

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           S+NN  GVPL+L  +  + +FGIFE+GM   GEI +L+ +++P + VIT I+ AH+ NF 
Sbjct: 619 SFNNKFGVPLSLFNLKKNDEFGIFEIGMDKKGEIDYLSKIIKPDVGVITNISYAHIKNFK 678

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            I ++A AK+EI   ++  G + LN DD F+ L K  +    I       K+K+A+  L 
Sbjct: 679 NIHQVALAKSEIINNIKTNGILVLNQDDRFYNLHKKIAKKKNINIFTFSLKNKSANIYLE 738

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K  +   +  + V +  K +      I  +  +N+L T+ I+SI              + 
Sbjct: 739 KIVKERSKYKIFVNVNKKQIYFYVRLIFENNLKNLLATIAIISIFKDTQKLEKNIFLDYE 798

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GRG   +  L +    ++DESYN+NP S+K+AI    ++      +   +L DM E+
Sbjct: 799 MTKGRGDIIKVKLKKKSIYIVDESYNSNPLSLKSAIKNFDELKIDNSKK-KLILSDMLEL 857

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S+  H++  + ++  ++ ++ + G H+L     L +       +    +   I++ L
Sbjct: 858 GNYSKKLHLEAGKEINKTSLKNINVVGKHILHTYKNLDKHRRGVILKDKSKIIDLIKNDL 917

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLE-EFPAI 471
            + D +++K SNS G   L+N L   +F A+
Sbjct: 918 NNNDYLMIKGSNSTGLNNLVNKLKTGKFNAL 948



 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 152/453 (33%), Gaps = 38/453 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                G+S +S        FFAI+G   DG  FI HA++KGA +++             +
Sbjct: 16  NHQFAGLSFNSEDCKKNYIFFAIQGTKSDGTKFIDHAIKKGATVIISEQKFEGIKNK--V 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------------ 131
                 +V   L++L+   +      +IA+TG+ GK++  +     L+            
Sbjct: 74  LFLRSKNVRKILSELSYKTKKNIPKNLIAVTGTNGKSSIADFYFQLLNLGNKKVASIGTL 133

Query: 132 --SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               K +   + +          +             +  S  G  +     ++ +  + 
Sbjct: 134 GVKTKNSLKKVSNTTLDPIKLSKILNDLKKQKIDNVIMEASSHGLKQNRLDGLKFNTTIF 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T ++  HL       +   +K  +FE  L+  GTI  +     ++ LK  S    +    
Sbjct: 194 TNLSHDHLDYHKTFNDYLKSKLYLFEKLLKPRGTIITDSKIPEYKNLKRISLNNKLDLQA 253

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               +   D      +   ++  +E++   K  ++  + IG    +N+ M +        
Sbjct: 254 LSKSNNGIDIY--SHQFRDDKQIVEIKYNQKHYKLKINLIGKIQLKNLFMAMLAAKKSNL 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D  +K  S      GR ++     N     L    Y   P ++K  ++ L +      
Sbjct: 312 KFDQIVKLASRVKSVIGRFEKIGTLKNNSKVILD---YAHTPDALKTCLTNLKE--QFEN 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI- 422
            R   V G     G         +   ++      V+L+       +   ++ A+ ++I 
Sbjct: 367 KRIFIVFG----CGGNRDKDKRPIMGKIANQYCDRVYLTDDNPRDENPKKIRLAIKKTID 422

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V    +           L  GD++V+  K 
Sbjct: 423 KSKVFEISSRSKAIHKAILDLKTGDILVIAGKG 455


>gi|225870072|ref|YP_002746019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225699476|emb|CAW93001.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 461

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + 
Sbjct: 3   LTLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA        +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + R
Sbjct: 116 DMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIA++T I  AHL+ F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIALLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        +           +  +  +       V     G + A N ++   + 
Sbjct: 236 FGDHQELVVEDIKEC----------KDSLTFRTNVLPRPVTLPLTGKYNATNAMIAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           L+ + YNANP +M+  +   + I
Sbjct: 286 KLLAVPDEDIIEALET---VKLTRHRTEWVKAANGADLLADVYNANPTAMRLILETFAAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
             +  G++IAVL DM E+G  S + H  L   L    I  +   G  + AL     +   
Sbjct: 343 PANPNGKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQDYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S  V +       +  + +  ++ + L   D +++K S+S     +++ L  
Sbjct: 403 SGRVSFFKKNNREDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 454


>gi|169831597|ref|YP_001717579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638441|gb|ACA59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 470

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 212/465 (45%), Gaps = 17/465 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++        I   P   V  ++ D+R +A  E F A++G  +DGHDF   AV +GA
Sbjct: 5   TIAEIRAVTGAEIIQGEPSARVKRVTTDTRVLAGGELFVALRGSRFDGHDFAGQAVDRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V+ ++        + V  V D L AL  LA+  R R    +IA+TGS GKTTTK++
Sbjct: 65  CGLLVSREVSV---PSGVAVLKVADTLTALQALALDNRRRCGLPVIAVTGSTGKTTTKDL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT  L++  +  A   + NN IG+PLTL  +    +  + ELGM   GEI  L  +  P 
Sbjct: 122 LTAVLAARFRVLATRENLNNEIGLPLTLLDVDPVHEVAVVELGMRAPGEIDLLARICEPT 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             VIT I   HL     +  IA AK E+ + +  +G   L+ +    +    +       
Sbjct: 182 GGVITNIGETHLELLGSVANIARAKGELLDHIPPSGFAVLHAESPGMDEQARRCRG---- 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG+S++ADF+L  ++   + S   V+  G   E      G H A N L  + +   
Sbjct: 238 RVVRFGESESADFRLLDYRALPDGSVFRVRSAGGDEEYYLPLFGRHTALNALAAIAVGLE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   V      L        R    +  +  G  T+I+++YNA+PAS+KAA+ VL++I+ 
Sbjct: 298 LGLAVSEIRAGLEQARASSLR----QAIVKAGGLTIINDTYNASPASVKAALEVLAEIAA 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--- 422
                 +A+LG M E+G  S   H ++    +   +  +   G   + + D    +    
Sbjct: 354 --GRSTVAILGGMLELGPRSSEAHREVGMACAHAGVGQLVTMGELAVGIADGAREAGLPA 411

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +    T++      +    +  V++VK S +    R++  L E
Sbjct: 412 SRIWACHTLEETVDTARRLAGENVVILVKGSRAFQMERIVKGLAE 456


>gi|309809589|ref|ZP_07703446.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|308170070|gb|EFO72106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 2503V10-D]
          Length = 455

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|33603177|ref|NP_890737.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella bronchiseptica RB50]
 gi|33568808|emb|CAE34566.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella bronchiseptica RB50]
          Length = 945

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 192/437 (43%), Gaps = 21/437 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV   +      +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +         G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +        G + +  FG     D    +    
Sbjct: 686 AHENGAVISALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   +     S E+     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  + +       LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++ +    + I  +   G        A   +       ++D +   ++  L     
Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911

Query: 447 VVVKSSNSCGFYRLINL 463
           +++K S      R++  
Sbjct: 912 ILIKGSRFMRMERVVTA 928



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 163/479 (34%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L  ++G             + +DSR I P + F A  G   DG  F+  A+ +GA 
Sbjct: 15  LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGAS 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++  T+  A +         V  +   L  LA     R     +++AITG+ GKT+  +
Sbjct: 69  AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169
            L   L+ + K    IG+    +    +L       D                    L  
Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G  +     +R  +A  T +   HL     ++    AKA +F+  +    +    D 
Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +   LL +   AL         +   AD   R  +  +      + L     ++V   +G
Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344
            H   N+L+  G +S L   +    + L+   P +GR         +         L+  
Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++  A++ L  ++    GR + V G     GE       ++  +        V
Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +P  +           +   + S+    DV+++  K 
Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478


>gi|168486962|ref|ZP_02711470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570099|gb|EDT90627.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 457

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALYLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|121606310|ref|YP_983639.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595279|gb|ABM38718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 466

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 126/462 (27%), Positives = 198/462 (42%), Gaps = 17/462 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +    L  +    +          +  D+RS+ P + F A+KG H+D H+F+  A  +
Sbjct: 1   MMSLQQALGCLPSARLVGDGHVVPLRVHTDTRSLQPGDLFVALKGEHFDAHEFLPQARAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +    +  +     +P   V D   AL +LA   R +    +IA+TGS GKTT  
Sbjct: 61  GAVAAIAQHGLREA----GLPGLEVADTRLALGQLAAGWRSQFGLPLIAVTGSNGKTTVT 116

Query: 124 EMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+   L + K     A  G+ NN IGVPLTL R+      G+ ELGM+H GEI +L HL
Sbjct: 117 QMIAAILRAWKPDAALATEGNLNNDIGVPLTLLRLRASHQVGVIELGMNHPGEIAYLAHL 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++      HL   + +E +A     +   L+  G      DD +  + +     
Sbjct: 177 ARPSVALVNNAQREHLEFMATVEAVAQENGSVLASLDADGIAVFPADDVYTAVWRR---L 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + + +F  +  AD      +   +   +E Q     +E   H  G H  +N L    
Sbjct: 234 AGERQVLTFALAAPADVT-ASARWEGDGWQVEAQTPSGPIEFSLHIAGRHNVKNALAATA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +      LS F P +GR +     L     TLID++YNANP SM+AAI VL+
Sbjct: 293 SALAAGVPLSFIAAGLSAFVPVKGRSRALSVPLQGRSLTLIDDTYNANPDSMQAAIQVLA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++     G R+ V+GDM E+G     FH +     +   I  ++  G        A    
Sbjct: 353 ELP----GPRLLVMGDMAEVGSQGPQFHDEAGRNAAAQGIEKLFTLGEQSQGACAAFGEG 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               +   M  L   + + L     ++VK S      R++  
Sbjct: 409 C---HFSDMAELTAAVVAELPHVTSILVKGSRFMKMERIVQA 447


>gi|225859425|ref|YP_002740935.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
 gi|225721821|gb|ACO17675.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae 70585]
          Length = 457

 Score =  239 bits (609), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T +++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|322385094|ref|ZP_08058741.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270718|gb|EFX53631.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 457

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 119/469 (25%), Positives = 201/469 (42%), Gaps = 30/469 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +             DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLAAKNDVSQFENVTFRNAEFDSRLIEAGDLFIPLKGAR-DGHDFIATAFDQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +         P   VDDVL A   LA     ++   ++A+TGS GKTTTK+M
Sbjct: 64  TATLSERPVAEG------PYVLVDDVLAAFQALAQYYLEKTGVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +G++K G + +  D    + L  +   +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAKGKMQIADGMKKGGLLLVPADKIVNDFLPDQQKVVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++   +   
Sbjct: 236 --------FGPDADICLTRLEERKDSLTFEANFLEQAIDLPVTGKYNATNAMIASYVALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A +       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSESAIRQAFAQLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSAIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSI 422
              GR+ AVL DM E+G  S+  H  +   L+   I+ ++L G  + AL      +    
Sbjct: 345 SQGGRKAAVLADMKELGADSKLMHGAMITSLNPEVITDLFLYGEDMEALYVYAREIYPPN 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            VHY       +  + L   +++ L   D +++K SNS    +L+ +L 
Sbjct: 405 RVHYFVKNADKDQFEDLTKTVKTWLQSSDQILLKGSNSMKLDKLVEVLE 453


>gi|33598266|ref|NP_885909.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella parapertussis 12822]
 gi|33566824|emb|CAE39039.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella parapertussis]
          Length = 945

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 192/437 (43%), Gaps = 21/437 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV   +      +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +         G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +        G + +  FG     D    +    
Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   +     S E+     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGLVTPAGSAELDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  + +       LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++ +    + I  +   G        A   +       ++D +   ++  L     
Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911

Query: 447 VVVKSSNSCGFYRLINL 463
           +++K S      R++  
Sbjct: 912 ILIKGSRFMRMERVVTA 928



 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 163/479 (34%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L  ++G             + +DSR I P + F A  G   DG  F+  A+ +GA 
Sbjct: 15  LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLASDGRQFMDQALARGAS 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++  T+  A +         V  +   L  LA     R     +++AITG+ GKT+  +
Sbjct: 69  AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169
            L   L+ + K    IG+    +    +L       D                    L  
Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G  +     +R  +A  T +   HL     ++    AKA +F+  +    +    D 
Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +   LL +   AL         +   AD   R  +  +      + L     ++V   +G
Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLALPDGEAQIVTRLLG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344
            H   N+L+  G +S L   +    + L+   P +GR         +         L+  
Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++  A++ L  ++    GR + V G     GE       ++  +        V
Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +P  +           +   + S+    DV+++  K 
Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478


>gi|194396936|ref|YP_002038284.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
 gi|4009466|gb|AAC95436.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae G54]
 gi|194356603|gb|ACF55051.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae G54]
          Length = 457

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|306824763|ref|ZP_07458107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432974|gb|EFM35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 484

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 201/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + +    ++     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 30  LTIHEVAQAVGAKNDVSLFEDTWLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 88

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 89  GATVTLSEKEVA------NHPYILVDDVLSAFQALAAYYLEKTAVDVFAVTGSNGKTTTK 142

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 143 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 202

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 203 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPVSLLLAPADPIIEDYL---PTDKK 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    S  + +  D   RK     +              +     G + A N ++   + 
Sbjct: 260 VVRFGSGAELEVTDLIERKDSLTFKA-------NFLGQALDLPVTGKYNATNAMIAAYVG 312

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 313 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  +   G  +  L     +   
Sbjct: 370 PANEGGKKIAVLADMKELGSQSVQLHNQMILSLSPDVLDTIIFYGEDIAELAQLASQMFP 429

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 430 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 482


>gi|168488616|ref|ZP_02712815.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|221232407|ref|YP_002511560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855100|ref|YP_002736612.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298230135|ref|ZP_06963816.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254426|ref|ZP_06978012.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503414|ref|YP_003725354.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|183572707|gb|EDT93235.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae SP195]
 gi|220674868|emb|CAR69443.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722486|gb|ACO18339.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae JJA]
 gi|298239009|gb|ADI70140.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|332072499|gb|EGI82982.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA17570]
          Length = 457

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 202/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PI 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENE 455


>gi|325912429|ref|ZP_08174824.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
 gi|325475771|gb|EGC78942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 143-D]
          Length = 455

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|259500989|ref|ZP_05743891.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190562|ref|ZP_07266816.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus iners
           AB-1]
 gi|309804651|ref|ZP_07698716.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808562|ref|ZP_07702458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|329920439|ref|ZP_08277171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
 gi|259167683|gb|EEW52178.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|308166043|gb|EFO68261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168190|gb|EFO70312.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|328936115|gb|EGG32568.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners SPIN 1401G]
          Length = 455

 Score =  239 bits (609), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|329848045|ref|ZP_08263073.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
 gi|328843108|gb|EGF92677.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Asticcacaulis biprosthecum C19]
          Length = 464

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 172/465 (36%), Positives = 241/465 (51%), Gaps = 12/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWTF +L +A  G   G+      +GI+ DSR++ P + F A++G   DGHDF+  A   
Sbjct: 9   LWTFDELAKATGGTLTGVGNIAEASGINFDSRALQPGDIFLALQGAR-DGHDFVAQAFAS 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA L V    +             V DV  AL  +AV AR R  +     +TGSVGKT+ 
Sbjct: 68  GAVLAVTRRPIE------GGACLLVPDVQKALEDIAVFARNRAPQTRRGGVTGSVGKTSV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            +M+   L    + ++ I S+NNHIGVPLTLARMP D +  +FE+GM+H  EI  L+  V
Sbjct: 122 TQMVMQGLQQAGRAHSAIKSFNNHIGVPLTLARMPADTERAVFEIGMNHADEITPLSEFV 181

Query: 183 RPHIAVITTIAPAHLSNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            PH  VITT+   H  NF   E  +A+AKAEIF+GL   G   LN D+ +F+ L  K+  
Sbjct: 182 APHAVVITTVGAVHTENFPDGEAGVAAAKAEIFDGLVPGGLAILNADNRWFDHLSTKARG 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G      FG++   D QL + +   +++ +  +  G+ +       G H A N L  L 
Sbjct: 242 SGALVAA-FGEAGGVDAQLIEHRVNGDRASVAARFHGRDIVFSLSHTGRHQAVNALAALL 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L  D+DT++ AL  F   EGRG+        G  T+IDESYNANP SM A ++ L 
Sbjct: 301 MLEALDVDLDTSLLALESFATLEGRGRVITKPFKGGELTIIDESYNANPVSMTATLASLG 360

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q      GR++AVL DM E+G      H  LAE +    +  V+L+G  +  L DALP  
Sbjct: 361 Q--RETAGRKVAVLTDMLELGVDEADQHAGLAEAVVASGVDRVYLAGPLMKHLWDALPSG 418

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   Y+ T   L   +   L  GDVV++K SN      +   LL 
Sbjct: 419 LKGGYAATAADLLAAVTEGLQAGDVVMLKGSNGSKAGLIAKALLA 463


>gi|223041552|ref|ZP_03611753.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
 gi|223017647|gb|EEF16057.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor 202]
          Length = 464

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 206/475 (43%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L Q ++G  +G   +  V  IS D+R    +  FFA+KG  +D HD++  A
Sbjct: 1   MIKQTT-QQLAQTLKGKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +++G   +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKT
Sbjct: 59  IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLIPEHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K
Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKVGGKAIVNLAHYYPEWQK 233

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                      Y+   K   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR        N      ID+SYNAN  SMK+
Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKDN---VLFIDDSYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL Q        RI V+GDM E+G+ S + H ++A+ +    +  V   G     + 
Sbjct: 351 AVSVLKQYPA----FRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+   +      +  +V++ K S S     +I  L
Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456


>gi|312874320|ref|ZP_07734352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315653951|ref|ZP_07906867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325913189|ref|ZP_08175559.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
 gi|311090193|gb|EFQ48605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|315488647|gb|EFU78293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners ATCC 55195]
 gi|325477610|gb|EGC80752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners UPII 60-B]
          Length = 455

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 132/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ LV P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSELVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|312872550|ref|ZP_07732618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311091912|gb|EFQ50288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 2062A-h1]
          Length = 455

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FAINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLKEDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|70732388|ref|YP_262144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346687|gb|AAY94293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 455

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 128/464 (27%), Positives = 201/464 (43%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++   +    I        +G+SIDSR+I   + F A+ GP +DGHD++   
Sbjct: 1   MLKALQLSEVSAPLDARLIAG--DARYSGVSIDSRAIQAGQLFIALTGPRFDGHDYLNEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  S     +P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVPDST----LPQLLVKDTRLALGQLGALNRAAFSRPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L +    +A  G+ NN +G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKEMLASILRTRGPVHATRGNLNNDLGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A+I     AH+  F G E+I  AK EI EGL+  G   LN DD  F + KA+  
Sbjct: 175 MTRPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDSAGIAVLNLDDKAFPIWKAR-A 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      ++   S    F     +        ++        V  + +G H   N L   
Sbjct: 234 AGRQVLSFALTDSSADFFASDIGRDARGCPSFKLHSPKGVEAVQLNLLGTHNVANALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   +   +  L+   P +GR              +ID++YNANP SM AA+ +L
Sbjct: 294 AAAHAMGVSLFGIVTGLNAVQPVKGRTVAQLAKNG---MRVIDDTYNANPTSMCAAVDIL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  S    GR + VLGD+ E+GE ++  H ++    +   +S ++  G  +     A   
Sbjct: 351 AGFS----GRTVLVLGDIGELGEWAEQGHREVGAYAA-GKVSALYAVGPMMAHAVAAF-- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             H  +  +   L   +         +++K S S     ++  L
Sbjct: 404 GEHARHFASQADLIAALGVEQDPNTTILIKGSRSAVMENIVAAL 447


>gi|331265948|ref|YP_004325578.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
 gi|326682620|emb|CBZ00237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl-ligase
           [Streptococcus oralis Uo5]
          Length = 457

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H+++QA+     + I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVVQAVGAKNDVSIFEDAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVVTLSEKEVA------NHPYILVDDVLSAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVIRFGQGAELEVT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
           S +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 SANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|224826074|ref|ZP_03699177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
 gi|224601711|gb|EEG07891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lutiella
           nitroferrum 2002]
          Length = 453

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 142/465 (30%), Positives = 208/465 (44%), Gaps = 23/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+ Q   G   G      V  +  DSR+  P + F A+KG H+D HDF+   + +
Sbjct: 1   MLMLSDVAQLAGGRLAG--ADAEVTRVVTDSRAAGPGDLFVALKGEHFDAHDFVADVLAQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V  D         + +  VDD   AL +LA   R R +  ++ ITGS GKTT K
Sbjct: 59  GAAGALVRQDFALP----GVALVQVDDTRLALGRLAAGWRARFELPLVGITGSNGKTTVK 114

Query: 124 EMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EMLT  L++           G++NN IG+PLTL  +     + + E+GM+H GEIR+LT 
Sbjct: 115 EMLTAILAAHAGRDTVLATAGNFNNDIGLPLTLLGLNAGHRYAVIEMGMNHFGEIRYLTG 174

Query: 181 LVRPHIAVITTIAPAH-LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           L RP +A++     AH    FSG  +IA AK+EIFEGL + G   +N DD    +     
Sbjct: 175 LARPRVALVNNALRAHLGGGFSGTADIARAKSEIFEGLAEDGVAVINADDPHAAI---FR 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A   + + SFG    AD   R        +   +      + V     G H  +N L  
Sbjct: 232 AAAAGRRLLSFGL-GEADVNARDVTLSDTAAHFVLCSPQGDVAVALPAPGEHNVRNALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   +      L+ F    GR    +        TLID++YNANP SMKA I V
Sbjct: 291 AAAALALEVPLAAIAAGLAGFAGVRGR---LQRKHAGNGATLIDDTYNANPDSMKAGIDV 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q        R  V+GD+ E+GE + + H ++        +  +   G        A  
Sbjct: 348 LLQALA----PRWFVMGDIGELGENAAALHAEVGAYARERGLDALLTLGDLSRHAAAAFG 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + +  + +T+D L  ++ S L     V+VK S      R++  L
Sbjct: 404 ATAN--HFDTLDALLSYLDSHLPADATVLVKGSRFMRMERVVEHL 446


>gi|157150761|ref|YP_001450725.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075555|gb|ABV10238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 456

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 204/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       ++    DSR +   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFANVSLSNAEFDSRLVKSGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVA------GGAYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL+K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLKKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +          +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++H++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGANSKSMHGSMITSLNPEIVTHLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V+Y       +  + L   ++ +L   D +++K SNS    +L+  L +
Sbjct: 405 KVYYFIKNDEKDQFEQLTKAVRENLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|86148536|ref|ZP_01066823.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
 gi|85833682|gb|EAQ51853.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio sp. MED222]
          Length = 457

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/469 (27%), Positives = 211/469 (44%), Gaps = 23/469 (4%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   +  A+ G  I  G      +N +S D+R++     F A+ G  +D HDF   AV+ 
Sbjct: 5   SLEQICSAMSGQLIEAGKSSNSVINAVSTDTRTVEEGALFVALVGERFDAHDFCHQAVEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A  ++V   +      L+I    V+D   AL +L+     +     +AITGS GKTT K
Sbjct: 65  NASALLVERKL-----DLNITQVVVEDTKLALGQLSAWIHKQCDVPTMAITGSCGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L    K     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T LV+
Sbjct: 120 EMVASILQQRGKVLFTAGNFNNDIGVPLTLLRSEANDDYAVIELGANHIGEIAYTTQLVK 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  +A AHL  F  I  +  AK EIF+GL    T  +N + +  +       A  
Sbjct: 180 PQVALVNNVAAAHLEGFGSINGVKQAKGEIFQGLAAGDTAIVNLESNGGDFWND-VLADK 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S   SK   F          ++  ++Q    S+ V    IG H   N L    + 
Sbjct: 239 SVLTFSESDSKADYFAKNIRINEQGEACFDMQTPQGSIFVELGIIGQHNVANALAAAALS 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A +D     L+     +GR +  + + N     LID+SYNA+  +M       +++
Sbjct: 299 IQFGASLDEVKNGLANLISVKGRVEVQQLSQNIK---LIDDSYNASVPAM----KAAAKL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +G+R  +LG+M E+G+ S + H  + E  + +   HV   G     + +      +
Sbjct: 352 LSSFKGQRWLILGNMAELGDESLALHRQVGEYAAPFAFEHVLTYGDDTKVISEV----CN 407

Query: 424 VHYSETMDGLFLFIQSSLV-DGDV---VVVKSSNSCGFYRLINLLLEEF 468
             +  T   +   I+  L     V   ++VK +NS G  ++   L E F
Sbjct: 408 GTHFTTHQAMIAHIEQHLSLPESVSHTLLVKGANSAGMSKIAAALKENF 456


>gi|223932697|ref|ZP_03624696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|330832457|ref|YP_004401282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
 gi|223898667|gb|EEF65029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis 89/1591]
 gi|329306680|gb|AEB81096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Streptococcus suis ST3]
          Length = 453

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 124/472 (26%), Positives = 204/472 (43%), Gaps = 31/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I + P    N +  DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTLHEVAQVLGAKNDISLYPDRAFNKVEFDSRLITEGDLFVPLKGAR-DGHDFIPVAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G  + +          SL +P   V+D L AL +LA     ++   +IA+TGS GKTTTK
Sbjct: 62  GCVVTLSE-------VSLDVPHILVEDCLAALQQLAAYYLEKTGVEVIAVTGSNGKTTTK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ + +
Sbjct: 115 DMIHDVLATTYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSEIAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++VIT    AHL  F   EEIA  K +I +G+E    + +       +LL        
Sbjct: 175 PSLSVITLFGEAHLEFFGSREEIAKGKLQIADGMEPGSKLLIPAYPIADKLL------PS 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +  FG+  +             +  +   +     ++     G + A N ++   + 
Sbjct: 229 HVDLIRFGEQADLQVT----SLVESKDSLTFTVNFMDGDIFLPVTGKYNATNAMVASYVG 284

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +    AL+          R           ++ + YNANP +M+  +   S I
Sbjct: 285 KTLGVSNEAIKSALA---SLNLTRNRTEWKKAANGADILSDVYNANPTAMRLILETFSSI 341

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 342 PANEGGKKIAVLADMKELGSQSVELHNQMILSLSPDVLDTVIFYGQDIEGLAQLASQMFP 401

Query: 422 -IHVHYS-ETMD-----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              V++  +  +      L   ++  L   D ++ K SNS    +++  + +
Sbjct: 402 IGKVYFFRKNAEQDQFGDLVKQVKEVLGGKDQILFKGSNSMNLGKVVEAVEK 453


>gi|332160408|ref|YP_004296985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607131|emb|CBY28629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664638|gb|ADZ41282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859321|emb|CBX69668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica W22703]
          Length = 454

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 212/469 (45%), Gaps = 20/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + + H L   +    IG      +  ++ID+R + P   F A+KG  +DGHDF    
Sbjct: 1   MIKV-SLHFLSTLLNAEYIGRD-SVDITEVTIDTRKVTPGCLFVALKGERFDGHDFAED- 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    +  P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 58  ----AVAAGAGALLVSKHLLVEAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 114 SVKEMVAAILRQCGKVLYTSGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTD 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 174 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G +++ DF     +   + ++  +     ++ +     G H   N L   
Sbjct: 234 NKRVWRFSPHG-AEDIDFFASDVRITPKTTYFTLHSPLGTVAIELPLPGRHNIANALAAA 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L+      GR      A       L+D+SYNAN  SM AA  VL
Sbjct: 293 ALAMSVGASLAAVREGLTQLQAVPGRLFPIELAAG---KLLLDDSYNANVGSMTAAAQVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+GE +   H  + E      I+ V   G     L DA   
Sbjct: 350 AEMP----GYRVMVVGDMGELGETAVDCHRQVGEAAKQAGINKVLSVGALSQTLSDA--- 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S    + +  + L   +   L++  V  V++K S S     ++  L E+
Sbjct: 403 SGCGEHFQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451


>gi|123441028|ref|YP_001005017.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087989|emb|CAL10777.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 454

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 211/469 (44%), Gaps = 20/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + + H L   +    IG      +  ++ID+R + P   F A+KG  +DGHDF    
Sbjct: 1   MIKV-SLHFLSTLLNAEYIGRD-SADITEVTIDTRKVTPGCLFVALKGERFDGHDFAED- 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    ++ P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 58  ----AVAAGAGALLVSKHLLVAAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 114 SVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEYDFAVIELGANHIGEIAYTTD 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 174 LSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G +++ DF     +   + +   +     ++ +     G H   N L   
Sbjct: 234 NKRVWRFAPLG-AEDIDFFASDVRITPQVTHFTLHSPFGTVGIELPLPGRHNIANALAAA 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L+      GR      A       L+D+SYNAN  SM AA  VL
Sbjct: 293 ALAMSVGASLAAVREGLTQLPAVPGRLFPIELAAG---KLLLDDSYNANVGSMTAAAQVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+GE +   H  + E      I  V   G     L DA   
Sbjct: 350 AEMP----GYRVMVVGDMGELGETAVDCHRQVGEAAQQAGIDKVLSVGTLSQTLSDA--- 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S    + +  + L   +   L++  V  V++K S S     ++  L E+
Sbjct: 403 SGCGEHFQDKNTLAARVSELLLEHPVITVLIKGSRSAAMENVVRALQEK 451


>gi|227486333|ref|ZP_03916649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
 gi|227235744|gb|EEI85759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus lactolyticus ATCC 51172]
          Length = 467

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 198/470 (42%), Gaps = 18/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T  ++   I G           + G+S DSR+I P E +  + G  +DG  FI  
Sbjct: 9   MIE-KTLSEIAHMINGEISDEKFSAIKIKGVSTDSRTIDPGELYIPLVGEVFDGRIFIKE 67

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              KGA   +++ D      ++SIP   V D   AL  LA A R      +I ITGS GK
Sbjct: 68  CEDKGAEAFIID-DPTKINKTVSIPYVRVADTKKALQDLATAYRKELSCKVIGITGSNGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   LS   KT    G+ NN IGVP T+  +  D +  I ELG  + G+I   +
Sbjct: 127 TTTKDLLYKILSEKYKTQKTCGNLNNEIGVPKTVLSLDPDTEVAIIELGTDNFGDISLTS 186

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+PHIA+IT I  AHL N      I  AK EI EG+E  G    N DD   +      
Sbjct: 187 RMVKPHIAMITNIGDAHLHNLKTRSGILKAKLEILEGMEDDGIFIYNIDDPTMKE--EIP 244

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + SFG+S  ADF++   K  +            S E  H  +      N+   
Sbjct: 245 TYDIKQKVLSFGRSDKADFKIVFEKSPTSIIR-------FSHENDHFEVPLMGEHNIYNA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +V I            + F   +    R    L    F ++D+SY +NP S+ A +  
Sbjct: 298 AAVVMISEMLGLNKEMIDAGFMEVKSSQNRTE-LLECDGFDILDDSYKSNPQSLLAGLET 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +   G  R+I  L DM E+GE     H ++ + L    I +    G     + +A  
Sbjct: 357 TYML--EGYKRKIVCLADMLELGENEVDLHREVGKKLDSKKIDYALFYGPLAKQMYEASL 414

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +       Y    D L   ++S ++   ++ VK S+      +I  +  
Sbjct: 415 ENFPADRTFYFNHKDELIEKLKSLVIGASLIFVKGSHGMHMEEIIESIKN 464


>gi|303234364|ref|ZP_07321003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
 gi|302494480|gb|EFL54247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna BVS033A4]
          Length = 454

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 213/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG   ++D+++   K     S                 +G+H   N  M++ +  +
Sbjct: 240 KNITFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R       +    F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|315613578|ref|ZP_07888485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314269|gb|EFU62314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 457

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQAVGAKNDVSLFADVQLEKAEFDSRLIRTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     +S   + A+TGS GKTTTK
Sbjct: 62  GAVVTLSEKEVA------NHPYILVDDVLSAFQTLAAYYLEKSAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+   P D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHKPDDTEKLVLEMGQDHLGDIHLLSKLAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAPGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEVT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIAAYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   ++ V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLNTVIFYGEDIAELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVFYFKKTADEDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENE 455


>gi|309803741|ref|ZP_07697827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164150|gb|EFO66411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 455

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESAIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 455


>gi|322377427|ref|ZP_08051918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
 gi|321281627|gb|EFX58636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M334]
          Length = 456

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     + I P   +     DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDVTIYPDSPLVKAEFDSRLIAAGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEIA------NHPYILVDDVLTAFQSLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEI----IDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGINDQILLKGSNSMNLAKLVESLENE 455


>gi|322388819|ref|ZP_08062416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
 gi|321140438|gb|EFX35946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus infantis ATCC 700779]
          Length = 457

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 205/473 (43%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     +       +     DSR I P + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVARVVGAKNDVTGYADSPLVKAEFDSRLIGPGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++         P   V+DVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEQEVA------DHPYILVEDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+EK   +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKLQIADGMEKGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +  FG     +      +    +  + ++       +     G + A N ++   + 
Sbjct: 230 EQKVVRFGPGAELEIT----ELTERKDSLTLKANFLEKSLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVTEEQIGQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G+++AVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKLAVLADMKELGDQSVQLHNQMILSLSSDALDTVIFYGEDIADLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + +   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTAEEDQFEAMVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 455


>gi|33593958|ref|NP_881602.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella pertussis Tohama I]
 gi|33564032|emb|CAE43298.1| Possible murein precusor biosynthesis bifunctional protein
           [Bordetella pertussis Tohama I]
 gi|332383376|gb|AEE68223.1| D-alanyl-D-alanine ligase [Bordetella pertussis CS]
          Length = 945

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 116/437 (26%), Positives = 191/437 (43%), Gaps = 21/437 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I   E F A+ G ++DGHD++  A   GA   VV   +      +++P   + 
Sbjct: 510 VSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVA----DVALPQLVLG 565

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNH 146
           D L AL ++  A R      ++A+TGS GKTTTKEM++  L+  +         G++NN 
Sbjct: 566 DTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNE 625

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       +FELGM+H GEI  L  +  P +A++T     H      +E +
Sbjct: 626 IGVPLTLLRLRARHRAAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAV 685

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +   L + G      D+ +  +        G + +  FG     D    +    
Sbjct: 686 AHENGAVIGALPEDGVAVYPGDEPYAAIWDK---LAGARRVLRFGLQPGLDVYAERVVTQ 742

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   V     S  +     G H  +N L  +       A + T I AL+ F    GR
Sbjct: 743 AHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVAGR 802

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  + +       LID++YNANP S +AAI VL+++       R  VLGDM E+G+   
Sbjct: 803 MQHRQMSDG---TVLIDDTYNANPDSARAAIDVLARLPA----PRALVLGDMGEVGDNGP 855

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++ +    + I  +   G        A   +       ++D +   ++  L     
Sbjct: 856 AMHREVGDYAREHGIDALITLGEASRDAAHAFGPAARA--CASVDEVVAALRG-LRPSS- 911

Query: 447 VVVKSSNSCGFYRLINL 463
           +++K S      R++  
Sbjct: 912 ILIKGSRFMRMERVVTA 928



 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 164/479 (34%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L  ++G             + +DSR I P + F A  G   DG  F+  A+ +GA 
Sbjct: 15  LDQALAWLRGCVAPTAD------LRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGAS 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++  T+  A +         V  +   L  LA     R     +++AITG+ GKT+  +
Sbjct: 69  AILYETEG-APVAPAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQ 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGM 169
            L   L+ + K    IG+    +    +L       D                    L  
Sbjct: 128 WLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSLTTPDVLTMHRTLARMRAAGARAVALEA 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G  +     +R  +A  T +   HL     ++    AKA +F+  +    +    D 
Sbjct: 188 SSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAAVVNADDP 247

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +   LL +   AL         +   AD   R  +  +      + L    +++V   +G
Sbjct: 248 AGERLLASLPAALKT---GYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDE 344
            H   N+L+  G +S L   +    + L+   P +GR         +         L+  
Sbjct: 305 QHNISNLLLVAGALSKLGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVV 364

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++  A++ L  ++    GR + V G     GE       ++  +        V
Sbjct: 365 DYAHTPDALARALTALRPVAQARGGRLVCVFG---CGGERDPGKRPEMGRIAVER-ADRV 420

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +P  +           +   + S+    DV+++  K 
Sbjct: 421 VVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAA-PDDVILLAGKG 478


>gi|225351423|ref|ZP_03742446.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157767|gb|EEG71050.1| hypothetical protein BIFPSEUDO_03018 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 491

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 149/501 (29%), Positives = 216/501 (43%), Gaps = 43/501 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP--QGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ QA+QG  I         V      DSR I     F AI G   DGHD++
Sbjct: 1   MMPM-SLEEIAQAVQGRLIAGTAAIDTPVATSTFTDSRQIVEGSVFVAIAGERVDGHDYV 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATIIA 112
                +GA   +V+ ++  +     +P   V+D + AL  LA     R     +  T+I 
Sbjct: 60  SKVGAQGAVAAIVDHEIDGA----GVPQIVVEDTVLALGALAKHNIERRRALETPFTVIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+++   L+ I  T A +GS+NN IG+PLT  ++  +  F + E+G +H+
Sbjct: 116 ITGSVGKTTTKDLMKALLAHIGPTIAPVGSFNNEIGLPLTSLKVHAETRFLVAEMGANHV 175

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D   
Sbjct: 176 GEIANLTSLVPPDIAVVLKVGVAHLGEFGSPERIAQAKSEIIRGLVPGGLSVLNANDEHV 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNAD------FQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             + A +       +  FG  +N D       Q     +    S++     G+  EV   
Sbjct: 236 AAMSAIAPGD----VMWFGLPQNNDGKPAISAQHVHCDELDHPSFILDNGDGEHAEVTLG 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDES 345
             G H   N L    +   L   +     ALS                 Q   FTLID+S
Sbjct: 292 ICGQHNVMNALAAASVAMRLGMSIGDVASALSDVTAISPHRMAVSIVNKQETSFTLIDDS 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +NANP SMKA +  L +     E +    AVLG M E+G   +  H+ +        +  
Sbjct: 352 FNANPDSMKAGLDGLLRWKAGSESQPFRVAVLGAMLELGPDEKDLHVGIGRYALEGGVDA 411

Query: 404 VWLSGFHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSL--VDGDVVVVK 450
           +   G    A  DAL             + HV +   +D     +        G VV++K
Sbjct: 412 LLTVGSASDASLDALAGAMADGASSAGDASHVDWVHDIDEADSLVTRLAVEHPGAVVLLK 471

Query: 451 SSNSCGFYRLINLLLEEFPAI 471
            S++ G       L E + A+
Sbjct: 472 GSHASGLS----ALAERWQAL 488


>gi|113474363|ref|YP_720424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
 gi|110165411|gb|ABG49951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Trichodesmium erythraeum IMS101]
          Length = 468

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 124/460 (26%), Positives = 207/460 (45%), Gaps = 25/460 (5%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
                +  +  I+ D+R++ P E F A++G ++DGH+F+  A++KGA  V+V  +   + 
Sbjct: 22  FHTPEKTLITSINTDTRNLQPGEGFLALRGNNFDGHNFVDEAIEKGASCVIVEQEYTLNS 81

Query: 79  G----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                S +IP+  V++ L A  K+A   R R    +I++TGSVGKTTTKE++   L++  
Sbjct: 82  EIQQLSNNIPILQVENTLKAYQKIARWWRDRFDIPVISVTGSVGKTTTKELIAEVLATQG 141

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K      +YNN IGV  TL ++  + ++ + E+ M   GEI  LTH+  P I +IT +  
Sbjct: 142 KVMKTEANYNNEIGVAKTLLQLSNEENYAVVEMAMRGPGEIAELTHIANPTIGLITNVGT 201

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AH+     +E IA AK E+   +  +    LNYD+       AK            G++ 
Sbjct: 202 AHIGRLGSVEAIAEAKCELLREMSDSSIAILNYDNQRLIETAAKVW---------SGETF 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
               +    +     S             +            L  L ++        T  
Sbjct: 253 TYGLEGGNLQGKLIDSQTINVEGVDLPLPLPGSHNASNYLAALAVLKVLHGKNIPAKTLF 312

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           ++L+     +  G R R    +    ++DESYNA   SM AA+++L++         IAV
Sbjct: 313 QSLTNNLFVQLPGSRARKYDLKNDIVILDESYNAGLESMIAALNLLAETPGKR---HIAV 369

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDALPRSIHVHYSETMDG 432
           LG M E+G  S  FH  +  V+   NI  +++        A+      S+     E +  
Sbjct: 370 LGTMKELGNKSILFHQQVGNVVKNLNIDGLFILADFEEAKAMATGAA-SLQFIKVENITA 428

Query: 433 ------LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 L  ++Q  L  GD V+ K+S+S    +++ LL+ 
Sbjct: 429 DNAHHNLAKYLQEFLQPGDRVLFKASHSVELNKVVELLIN 468


>gi|262373644|ref|ZP_06066922.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
 gi|262311397|gb|EEY92483.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter junii
           SH205]
          Length = 465

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 202/469 (43%), Gaps = 24/469 (5%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L +A QG  + G +PQG +  I  DSR     + F A+KG  +D HDF+     +
Sbjct: 14  WTPEQLQEATQGEWLHGNIPQGAIKRILTDSRHAEVGDVFLALKGERFDAHDFVAQVATQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   +      + I    V D   AL  L    R ++    +IA+TGS GKTTT
Sbjct: 74  GCQIAIVEHPI-----DVDIAQLVVKDTRLALGDLGAYRRKQNAHLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++LV
Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G E I  AK+EI+  +   G   +   D F   ++    + 
Sbjct: 189 QPHVAGILNIGTAHLGEFGGREGICRAKSEIYAHILPQGVAIVPAADDFTADIRN---SA 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  SFG+    D    + +   +     +        V     G H  QN       
Sbjct: 246 QAHSNLSFGQ--GGDVYATEIELKPQSVRFNLHTPQGQRVVNLPFAGEHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  ++D  ++ L      +GR    +          ID++YNANP SM       +Q
Sbjct: 304 ALAIGIELDDIVEGLEQAQGAKGRLNFIQ----HQNHLFIDDTYNANPTSM----RAAAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +G ++ V+GD+ E+G+ S   H DL   L+   +  + + G +  A       S 
Sbjct: 356 VLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLAALALDQIVVVGEYANAALQGSSHSE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
            +H   T      F+   +          + K S       L+  L+E+
Sbjct: 416 KLHAFATQAEALPFLIQLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 464


>gi|114799693|ref|YP_761705.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739867|gb|ABI77992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 175/470 (37%), Positives = 254/470 (54%), Gaps = 17/470 (3%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN PLWT  D+  A  G          V G ISID+R++   + F A+K    DGHDF+ 
Sbjct: 1   MNRPLWTSSDMELATGGD---ASAAFEVTGSISIDTRTLQKGDLFVALK-DQRDGHDFVE 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + GA   +V+  M         PV  V+DVL AL ++ +AAR+R  A   A+TGS G
Sbjct: 57  AAFKAGAAGALVSRPMP------GGPVVQVEDVLEALTQMGIAARVRCGAHRTAVTGSAG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KEML     +    +  + S+NNH GVPLTLARMP +    +FE+GM+  GEI   
Sbjct: 111 KTSVKEMLAQIYRAHGPAHWNVKSFNNHWGVPLTLARMPEETQRAVFEIGMNTPGEIAPR 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +VRPH  ++T IA AHL     +E IA  KA IF GLE  GTI L  DD+F + L  +
Sbjct: 171 SQMVRPHTGIVTCIAAAHLQGLGSVEGIAEEKANIFAGLESGGTIILPADDTFLDYLSER 230

Query: 239 SHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +      + +FG S +A  ++  ++     S +EV + G+ + V  + +G H AQN+ 
Sbjct: 231 ARSFCPTGNVETFGASPDATARIVAYETDGRTSRVEVSIVGQRVAVTLNAVGAHWAQNVA 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356
             L   S  +  V    +ALS + P  GRG        + G  TLID++YNANPASM   
Sbjct: 291 AALLAASQASLSVKDCAEALSGYAPPPGRGTSETLVLPDIGEITLIDDAYNANPASM--- 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            + L  ++     RR+A LGDM E+G+ S + H  LA  +    +  V+L G  +  L +
Sbjct: 348 RAALKGLAQRAGTRRLAALGDMKEIGDSSAAEHRGLASSVVEAGVDGVFLVGAEMQHLSE 407

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ALPR +    + T D L+  +Q +L  GDV+++K SN+ G  R+ + L +
Sbjct: 408 ALPRDLQQVSAPTADELWNQLQKALRAGDVLLIKGSNASGMGRIADRLRQ 457


>gi|159903581|ref|YP_001550925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888757|gb|ABX08971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9211]
          Length = 462

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/464 (26%), Positives = 202/464 (43%), Gaps = 13/464 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+      + G +    +  +  DSR + P   F  ++G ++DGH F+  A  +GA 
Sbjct: 5   LSELINLWGYPAEGKLSNNILGPVFTDSRQVLPGGFFVPLRGQNFDGHQFLKEACDRGAK 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             VV+ D    I   ++  + VDD L A  +LA+  R R    ++A+TGSVGKTTT+E++
Sbjct: 65  AAVVSKDSTVQIPE-NLICWRVDDTLQAYQQLALLHRQRLSIPVVAVTGSVGKTTTRELI 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L+++    +   + NN IGVP T+ +        I E+ M  LGEIR L+    P I
Sbjct: 124 TACLTTLGAITSTSDNNNNDIGVPQTILQADFSDAALILEMAMRGLGEIRRLSCCSNPDI 183

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+      + IA AK EI   L  +GT+ +   D   + + ++     I  
Sbjct: 184 AVITNIGNAHIGRLGSRKNIAIAKCEITTCLNPSGTVIIPAGDPLLDSILSEKWPGRIIR 243

Query: 247 I--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +     G+   +   ++K                   +         M   +   L I  
Sbjct: 244 VGLMPLGEEHTSASYIKKNAVDLLGVLDLNNNSLSVDKEALTLPLEGMHNAVNFMLAIAV 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +  +           GR   +      G  T++DESYN++P S+KA++ +L    
Sbjct: 304 ALELGISLSNMNNLHVKTPCGRNSCF----TYGNLTVLDESYNSSPESVKASLDLL---- 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSI 422
               GR  AVLG M E+G+ S  FH  + +     ++  V +   G    A+     +  
Sbjct: 356 VTKPGRHFAVLGTMFELGDESIKFHSLIMQHAVDLSLDGVIVVSDGEEAEAMVAVGKQLP 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +       +    ++QS L  GD +++K+S   G  +L+  L  
Sbjct: 416 NFSIFSQPEEALPYLQSILKPGDNLLLKASRKIGLEKLLPFLEN 459


>gi|325288826|ref|YP_004265007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964227|gb|ADY55006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 471

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 120/473 (25%), Positives = 187/473 (39%), Gaps = 18/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +   + G   G   +   +  + DSR +   E F A+ G   DGH +I  A+Q 
Sbjct: 1   MLDSAKIAVLLNGRLYG-SEKAVFHRCTADSRQVKGGEMFIALAGEKTDGHKYIARALQS 59

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA +V+     +   G   +P    +  V+D L  L +LA        A +I +TGS GK
Sbjct: 60  GAAIVLAEEKRLRREGVPVLPEKSSIIAVEDSLKGLQQLAAIWLKEIGARVIGVTGSNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M+   L +  + +   G+ N  IG+P+T+   P D +  + E+GM  LG+I+ L 
Sbjct: 120 TTTKDMVAAVLGTKFRVHKNAGNLNTEIGLPMTVLGAPSDTEVMVLEMGMRGLGQIKTLC 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P  AVIT I   HL      E IA AK EI E L + G   LN +D      KA S
Sbjct: 180 EISCPCAAVITNIGATHLELLGSRENIARAKWEIVESLPEEGIAILNTEDKISME-KAAS 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +          GK    D  L   +                 E V   +      N+L  
Sbjct: 239 YHGKTLFYGIEGKFGRPD--LWAEEIIPSGDTGTTFRARYKKENVLIRLPLPGKHNVLDA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +     +              +    R           +I++ YNANPAS+    + 
Sbjct: 297 LAALGAGLLNGVNLESGSQALEGLQISAMRLEILPGCHQSIIINDVYNANPASV---KAS 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +   G  + +AVLG+M E+G  SQS H ++    +   +  +   G     +     
Sbjct: 354 LAVLKERGGAKTVAVLGEMYELGAASQSGHREVGVEAAGLGVLELVTVGKLAEEIAAGAL 413

Query: 420 RSI----HVHYSETMDGLF---LFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           ++      +H  E           I   L  G  V++K S      ++ N L 
Sbjct: 414 QNGFLPSRIHICEDCAEAVTATKKIIDLLGAGTWVLIKGSRGMHMEKISNELK 466


>gi|312871545|ref|ZP_07731638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|311092940|gb|EFQ51291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LEAF 3008A-a]
          Length = 455

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT I  AH+  F   ++IA AK EI + L++ G    N D+     L         + 
Sbjct: 181 CVITMIGEAHIEFFGTRDKIADAKMEITDFLKEDGKFIFNGDEP----LLQARAQKLNQL 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG +         +      +     +    ++     IG H   N L  + +    
Sbjct: 237 QATFGFNSTDTIYATNFNSYMHHAS--FTINDSKVKFTIPMIGKHNVSNALAAILVGRTF 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+ F P   R +  +  L +    ++ + YN+NP + KA ++  SQ+   
Sbjct: 295 GVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTAAKAVLTSFSQVDVD 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-----S 421
             GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  +  L +AL       +
Sbjct: 352 AFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMKYLFEALSGKYESSA 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 412 LHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLEHLL 455


>gi|323490562|ref|ZP_08095768.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
 gi|323395828|gb|EGA88668.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Planococcus donghaensis MPA1U2]
          Length = 452

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 203/464 (43%), Gaps = 19/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + + +   +   +    + G+SI++R++ P + F   +G + +GH ++  A++ GA 
Sbjct: 5   IEQVAKWLDIKT--NLKGIDITGVSINTRTLKPGDLFIPFRGENVNGHKYVRSAIELGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D         +P+  V+D   AL ++A A R    A +I ITGS GKT+TK+++
Sbjct: 63  ASLWQRD--EPGAPEDLPLLFVEDCEVALQEMARAYRDELSAMVIGITGSNGKTSTKDLV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L    K     G++NN +G+PLT+  +  D    + E+GMS  G+I FL+ L RP  
Sbjct: 121 ASVLKPYFKVQKTPGNFNNQLGLPLTILSLEEDTKVAVLEMGMSGRGQIEFLSELARPDY 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I  AHL +    E IA AK EI  GL++ G +F + D+   +             
Sbjct: 181 AIITNIGEAHLQDLGSREAIAEAKFEITAGLQQHGKLFYDGDEPLLQPFMEAFPQG---- 236

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             SFG   N +  +   K     S   +             +G H  +N L  + +    
Sbjct: 237 -VSFGFDDNNELTVTDIKATESGSS-FMVSGIIDAAFTIPVLGEHQVKNTLAAILVALEA 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +   K+L           R +          I+++YNA P+SM AA++ + + +  
Sbjct: 295 GLSEEQIRKSLKDAAL---TDMRMQMIQADNGAIFINDAYNAAPSSMNAALNFIRETTMK 351

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
            +     VLGDM E+G+  QS+H  L++ +S   +  V L G  +  L D L  +     
Sbjct: 352 DKKW--VVLGDMLELGDDEQSYHEALSKCISDNLV-GVCLYGPRMKWLYDKLQPTYGGRL 408

Query: 427 SETMDG---LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +      +   ++       V++VK S       +I   + E
Sbjct: 409 LWSEADYGPIIDLLKKYTNKDSVILVKGSRGMALENVIEPFVNE 452


>gi|86609487|ref|YP_478249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558029|gb|ABD02986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 445

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 119/471 (25%), Positives = 194/471 (41%), Gaps = 30/471 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T   +   +Q    G        V  I  DSR + P   F A++G  +DGH+FI  A+
Sbjct: 1   MLTLRTVADLLQTPLQGDPHLLGLPVQAICTDSRQLQPGSVFVALRGERFDGHNFIPQAL 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  V+    +         P F V D L A  ++A   R +   +++AITGS GKTT
Sbjct: 61  ARGAVAVISQRPVAG-------PHFQVSDTLAAYQRIARGWREQFPPSVVAITGSAGKTT 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML  ALS          ++NN IGV  TL +M  +  F + E+ M   GEIR L  +
Sbjct: 114 TKEMLAAALSRYGTVLKSEANHNNDIGVAQTLLQMRPEHQFVVLEMAMRGPGEIRRLAQM 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P  A+IT I  AH+        IA+AK E+ +     G   LN +D       A   +
Sbjct: 174 AQPTHALITHIGTAHIGRLGSRAAIAAAKCELLQ-ELGQGVALLNGEDPLLLSTAASLWS 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T          ++  +      E   + V L G+   +                 G
Sbjct: 233 GQTLTYGLDQGDLRGEWDPQAQTVTVEGLTLPVPLPGRHHALNWM--------------G 278

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +++ L +      +             R R     G   + DE+YNA+P +M   I+ L 
Sbjct: 279 VLAALRSLGLDWERLREPIALPTPLEGRNRHLKLAGDVEIWDETYNASPEAM---IAALH 335

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419
            ++     RR A+LG M E+GE +   + ++    +   +  + L      +  L D   
Sbjct: 336 LLAQTPGKRRWAILGPMRELGEHAPQLYAEVGRAAAPLGLDRILLLDPEGEMQPLLDQ-K 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            +      E +  L   +   +  GD ++ K++ +    R+++  L+E+ A
Sbjct: 395 PAAQTERCEEVSELLEILLHHVQAGDRLLFKAARAVELERVLHRFLQEWQA 445


>gi|126726615|ref|ZP_01742455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703944|gb|EBA03037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 474

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 181/476 (38%), Positives = 250/476 (52%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN LWT  D + A  G            G+SID+R+IA  + F A+K    DGH+F+  A
Sbjct: 1   MNALWTSQDAIAATGGACTV---DWVAEGVSIDTRTIAKGDLFVALK-DQRDGHEFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V+   +    +   P+  V +VL AL  L  AAR R+ A ++A+TGSVGKT
Sbjct: 57  LAAGASAALVDH--IPDNVAPDAPLLIVPNVLTALEALGTAARARTSAKVVAVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML + LS+  K +A   SYNNH GVPLTLARMP D DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRVMLSTQGKCHAAEKSYNNHWGVPLTLARMPADADFAVIEIGMNHPGEIGPLAK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P I +ITT+A  HL+ F  I+ IA  K+ +F GL + G   +N D    ++L    +
Sbjct: 175 LTQPDIGLITTVAAVHLAAFDNIQGIAVEKSALFSGLTENGVAIVNGDLETSDVL---MN 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   KTI  FG     +F L       +Q+  + Q    +        G H A N L  L
Sbjct: 232 AAQGKTILRFGSDAGFEFVLENVTVTEDQTMCQAQTNDSAFLYKISSPGRHFALNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF----TLIDESYNANPASMKAA 356
             VS L AD+  A   L+ + P  GRG++    L++G      TLID++YNANP S+ AA
Sbjct: 292 ASVSALGADMGLAAVDLAQWVPFTGRGQKKIIQLDRGDASLTLTLIDDAYNANPTSVAAA 351

Query: 357 IS------VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           I        +  I    +GRRIAVLGDM E+G      H  LAE+  +  I  V   G  
Sbjct: 352 IEILSVSNPIDNIGRIRKGRRIAVLGDMLELGTEEHQLHAGLAELKEIAKIDLVHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L  A+P S   H+ ET   L   ++S L  GDVV+VK S       +++ +  
Sbjct: 412 MKSLWSAVPNSKRGHWFETSSKLAELMKSQLDAGDVVLVKGSLGAKMAVIVDAIQN 467


>gi|149011468|ref|ZP_01832715.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684612|ref|YP_001836359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303258599|ref|ZP_07344579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262686|ref|ZP_07348626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303263626|ref|ZP_07349548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
 gi|303266387|ref|ZP_07352276.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|303268260|ref|ZP_07354058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|147764458|gb|EDK71389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629946|gb|ACB90894.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802372|emb|CBW35126.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae INV200]
 gi|302636242|gb|EFL66737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302640100|gb|EFL70555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302642211|gb|EFL72560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS458]
 gi|302644087|gb|EFL74345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS457]
 gi|302646664|gb|EFL76889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae BS397]
          Length = 457

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G ++  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGENIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVHDQILLKGSNSMNLAKLVESLENEAK 457


>gi|261253811|ref|ZP_05946384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
 gi|260937202|gb|EEX93191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           orientalis CIP 102891]
          Length = 452

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 208/471 (44%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     + +A+    IG      +N +S D+R+I     F A+ G  +D H F   A
Sbjct: 1   MISLM-LSQIAEALDAELIGN--DRVINSVSTDTRNIEQGALFVALVGERFDAHHFTHQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GAG ++V+  +     S  +P   V D   AL +L            +AITGS GKT
Sbjct: 58  VDSGAGALLVSKPV-----SGDVPQLVVKDTKLALGQLGALVHQTCLTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   +    +     G++NN IGVPLTL R   + D  + ELG +H+GEI + T 
Sbjct: 113 TVKEMIASIMEQKGQVLFTAGNFNNEIGVPLTLLRSTPEDDVAVIELGANHIGEIAYTTR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  +    
Sbjct: 173 LVQPDVALVNNVAAAHLEGFGSMDGVKQAKGEIYQGLKAGSVAIVNLDSNGGDYWQE-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +   +S   S               ++   ++     ++V    IG H   N L   
Sbjct: 232 ADKLVKTFSLTDSSADFTASDISLNEIGEASFVLKTPQGEIKVTLGIIGQHNVANALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A ++     L+  +  +GR              LID+SYNA+  +MKAA  +L
Sbjct: 292 ALALELGASLEMIQSGLASLNKVKGR---VELIELNQQIKLIDDSYNASVPAMKAAADLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G R  +LG+M E+G+ S + H  + +  + +   +V   G    A+ +    
Sbjct: 349 AGFK----GVRWLILGNMAELGDESLALHRQVGQHAAPFKFEYVLTFGADAKAISE---- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLLEEF 468
                + E    +  FI+  +        ++VK +NS G  ++   + E +
Sbjct: 401 ECGGRHFEDHQSMIDFIKQQIEQHLEPQTLLVKGANSAGMSKVAAAVKEMY 451


>gi|37678794|ref|NP_933403.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
 gi|37197535|dbj|BAC93374.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio vulnificus YJ016]
          Length = 453

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 204/472 (43%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   A
Sbjct: 1   MIE-TSLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V   +      L +    V D   AL +L      R +   +AITGS GKT
Sbjct: 58  VDAGAVALLVERAL-----DLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E    +  
Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T +S    +   +          ++   +    + + +    IG H   N +   
Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA+ +L
Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +      
Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468
                +      L  +I+ +L +       V+VK +NS G  ++   L E +
Sbjct: 402 -CGGKHFSDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|330501920|ref|YP_004378789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
 gi|328916206|gb|AEB57037.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas mendocina NK-01]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 203/466 (43%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W   ++   +    IG       + +  DSR+IA  + F A+ GP +DGHD++   
Sbjct: 1   MLKPWLLSEVAANLNARVIG--ADVAFSAVGTDSRTIAADQLFVALNGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++     +  +P   V D   AL +L    R   K ++ A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVA----NAPLPQLLVADTRVALGQLGALNRQAFKGSLAAVTGSSGKT 114

Query: 121 TTKEMLTIALSS--IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           + KEML   L +       A  G+ NN +G PLTL  +  +   G+ ELG +H+GEI + 
Sbjct: 115 SVKEMLASILRAGLNGAVLATRGNLNNDLGAPLTLLELVPEHRAGVIELGANHVGEIAYT 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L +P +A+IT    AH+  F G E+I  AK EI EGL   G   LN DD  F   + +
Sbjct: 175 VSLTQPQVAIITNAGNAHVGEFGGPEKIVEAKGEILEGLPSDGVAVLNLDDKAFVTWQRR 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    + +        +        +         ++    S  +  + +G H   N L 
Sbjct: 235 AAGRKVLSFALRDTRADFHGSDLA-RDERGCQGFTLRSPIGSARIQLNLLGEHNVANALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +   ++ L    P +GR       L      +ID+SYNANP SM AA+ 
Sbjct: 294 ACAAAHALGMPLVAMVQGLESLQPVKGRAVAQ---LAPNGVRVIDDSYNANPVSMCAAVD 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L+  S    GR + VLGDM E+GE ++  H D+    +   +  ++  G  +    +  
Sbjct: 351 ILAGFS----GRTVLVLGDMGELGEWAEQGHRDVGRHAA-GKVDALYAVGPLMRFAVEEF 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +      L   +++    G  +++K S S    +++  L
Sbjct: 406 --GSKGRHFVDQAELIEALRAE-QAGSTLLIKGSRSAAMDKVVAAL 448


>gi|225868920|ref|YP_002744868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225702196|emb|CAW99918.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 461

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 205/472 (43%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + 
Sbjct: 3   LTLHEVARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA        +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK
Sbjct: 62  GAVATFSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + R
Sbjct: 116 DMIEAVLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T I  AHL+ F   E+IA  K +I +G++  G +    D      L      + 
Sbjct: 176 PHIAVLTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        +           +  +  +       V     G + A N ++   + 
Sbjct: 236 FGDHQELVVEDIKEC----------KDSLTFRTNVLPRPVTIPLTGKYNATNAMIAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  I+AL      +    R           L+ + YNANP +M+  +   + I
Sbjct: 286 KLLAVPDEDIIEAL---EAVKLTRHRTEWLKAANGADLLADVYNANPTAMRLILETFAAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
             +  G++IAVL DM E+G  S + H  +   L    I  +   G  + AL     +   
Sbjct: 343 PANPNGKKIAVLADMKELGADSVALHSQMITSLDPKRIDQLVFYGDDIQALAKLASQDYP 402

Query: 421 SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S  V +       +  + +  ++ + L   D +++K S+S     +++ L  
Sbjct: 403 SGRVSFFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 454


>gi|330957974|gb|EGH58234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 207/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELVIHLDARLVGG--DCSFHGVSTDSRGIAPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AGKGAVGALVEHEVEGA----SLPQLVVLDTRKALAQLGAMNRNAFVDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  + D  + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHDAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+ TGT  LN DD  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDRIVEAKGEILEGLDATGTAVLNLDDKAFPIWQLRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + T      +  AD      ++ +      +         V   +         + 
Sbjct: 235 GERKVMTFAL--NNPAADLHATDLRRDARGCPAFMLNSPLGAAPVQLNLLGTHNVANALA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               +         I A              + A N     +ID++YNANPAS+ AA+ +
Sbjct: 293 AAAAACALGVSLEGIAAGLNNVQPVKGRAVAQIASNGV--RVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFS----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H H+  + + L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAHHFASQEELIAALGAEQNPDTTLLIKGSRSAAMENVVAAL 448


>gi|94498177|ref|ZP_01304738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
 gi|94422307|gb|EAT07347.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingomonas sp. SKA58]
          Length = 463

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 165/466 (35%), Positives = 228/466 (48%), Gaps = 15/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  ++ +A  G          V+G++ DSR +   + F A+KG   DGH F+  A
Sbjct: 1   MSDLWTSAEIAEATGG---AASAPFAVSGVAFDSREVTQGDLFVAMKGEATDGHRFVDQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+        ++  P   V D   AL  L +A+R R    +I +TGSVGKT
Sbjct: 58  FAQGAAGAIVS-------DAVDHPHIRVADSAAALQALGIASRRRMGGKVIGVTGSVGKT 110

Query: 121 TTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            TKE L +AL      + +  + SYNNH+GVPL+LARMP D  +GIFE+GM+H GE+  L
Sbjct: 111 GTKEALYLALDRAAPGQAHRSVKSYNNHVGVPLSLARMPRDSAYGIFEMGMNHAGELSAL 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           TH VRPH A++T IAPAH+  F    +IA AKAEIFEGLE      + YD      L  K
Sbjct: 171 THQVRPHAAIVTAIAPAHIEFFGTEAKIAEAKAEIFEGLEPGAAAIIPYDSPHVATLYNK 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +     + +      +     L      +  + +  +L    +       G H   N L 
Sbjct: 231 AERHAARILTFGMSPQADVHALETVPAPNGGTLVTARLPDAELCFTVAAPGDHWVSNALA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V  +  D+  A  AL+      GRG+R    +  G   LIDESYNANP SM    +
Sbjct: 291 VLAAVEAVGGDLAAAGLALAEMPGLPGRGERRILPVAGGEALLIDESYNANPLSM---AA 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L Q+      RRIAVLG M E+G  S   H  LA+ L+   I    L G  +  L DAL
Sbjct: 348 TLKQLGREHADRRIAVLGGMRELGSASADLHAGLAKPLADGAIDFAVLVGAEMAPLADAL 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             ++   +          I+  +  GD ++VK SN  G  RL+  L
Sbjct: 408 EGTMAYAHVPDAASAIPLIKKEMRAGDAILVKGSNGIGLSRLVAAL 453


>gi|71909114|ref|YP_286701.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
 gi|71848735|gb|AAZ48231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dechloromonas aromatica RCB]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 213/466 (45%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  W    + QA+QG  IG      ++G+S D+R+I   + F A+ G ++D HDF+  A
Sbjct: 1   MN--WLLSQVAQAVQGRLIG--ADVSIDGVSTDTRAITEGQLFIALAGENFDAHDFLAPA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V      S     +P   VDD   AL +LA A R +    +IA+TGS GKT
Sbjct: 57  IAAGATALMV---ADESKVPTGVPAVVVDDTRLALGRLAAAWRAKFNLPVIAVTGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           TTKEM+   L +          G+ NN IG+PLTL  +       + E+GM+H GEI +L
Sbjct: 114 TTKEMVAAILKAAFGAAVLSTRGNLNNDIGLPLTLLGLRASHRAAVIEMGMNHPGEIGYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +A+IT    AHL     ++E+A  K  IF GL   G   +N DD++  L +  
Sbjct: 174 APIGAPTVALITNAQRAHLEGMGDLDEVAREKGSIFLGLPANGVAVINADDAYAGLWR-- 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G + + +FG    AD    K +Q   +  +E+        ++    G H A+N + 
Sbjct: 232 -GMAGGRPVRTFGIDNAAD-VSAKVRQHGLEIGLELSAPEGDAALILSIPGRHNARNAVA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +   I  L  F   +GR    +    +    ++D++YNANP S++A I 
Sbjct: 290 AAAACLAAGIPMVAVIAGLEAFSGVKGR---LQRRTGKQGAEILDDTYNANPDSVRAGID 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GR++ VLGDM E+GE S  +H ++        I  ++  G          
Sbjct: 347 VLAATI----GRKLLVLGDMGEIGEASGQYHDEIGGYAKSQGIDRLFALGEAAQQAVRNF 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 HY   +D L   +   L     V+VK S      R+ + L
Sbjct: 403 GEGAK-HYC-NVDKLIAAVDKELGPETTVLVKGSRFMKMERVADAL 446


>gi|186477425|ref|YP_001858895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
 gi|184193884|gb|ACC71849.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia phymatum STM815]
          Length = 470

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 118/473 (24%), Positives = 195/473 (41%), Gaps = 19/473 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  +    I G ++          +S DSR+  P + F A+KG  +D HDF+      
Sbjct: 2   MFTLREAAAVIPGAAVSGDDSIAFERVSTDSRTCGPGDLFVALKGDRFDAHDFLSDVAAH 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               V+       +  +  +P   V  D   AL  LA   R R    ++A+TGS GKTT 
Sbjct: 62  NVSAVLATR----TPDNFEVPALRVTGDTRTALGALANGWRQRFSLPLVAVTGSNGKTTV 117

Query: 123 KEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           KEM++   ++     +     G++NN +G+PLTL R+       + ELGM+H GE   L 
Sbjct: 118 KEMISSIFAAAVGEASRLATAGNFNNDVGLPLTLFRLNETHKLAVVELGMNHPGETALLG 177

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P +AV+      H    + +E +A   A +   L+  G      +D++  + +   
Sbjct: 178 KIAEPTVAVVNNAQREHQEFMATVEAVALEHAAVIHALKPEGVAVFPANDAYAGIWR--- 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     I  F  +          K   E S + +      ++V    +G H A N L  
Sbjct: 235 VAATGNRIIDFALNTAEHTTEAAVKGSLEGSELSIDTAEGHVDVTLQVLGAHNAHNALAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN-QGFFTLIDESYNANPASMKAAIS 358
                     +D   + L  F   +GR +  R  L      T+ID++YNANP SM AAI 
Sbjct: 295 TAAALAAGVSLDAIKRGLEAFGAVKGRLQVKRAVLGAMAGATVIDDTYNANPDSMLAAID 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+         R+ V+GDM E+G+    FH ++        I  ++  G        A 
Sbjct: 355 VLA----ARPSPRVLVMGDMGEVGDNGPEFHREVGAYAKAQGIDALYALGEASRDACAAY 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 H+ + ++ L   ++ +        +VK S      R+++ +    PA
Sbjct: 411 --GDEAHHCDDVEALVAHLKQAAYGAAATYLVKGSRFMKMERVVDAVTSPQPA 461


>gi|320157427|ref|YP_004189806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
 gi|319932739|gb|ADV87603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Vibrio
           vulnificus MO6-24/O]
          Length = 453

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 139/473 (29%), Positives = 204/473 (43%), Gaps = 24/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   A
Sbjct: 1   MIE-TSLSHLAQLTQGQLIGD--DATFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V   +      L +    V D   AL +L      R +   +AITGS GKT
Sbjct: 58  VDAGAVALLVERAL-----DLPVAQVVVKDTKMALGQLGANVHQRCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E    +  
Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T +S    +   +          ++   +    + + V    IG H   N +   
Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPVSLGIIGQHNVANAIAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA+ +L
Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +      
Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEFP 469
                +      L  +I+ +L +       V+VK +NS G  ++   L E + 
Sbjct: 402 -CGGKHFSNHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENYQ 453


>gi|307249213|ref|ZP_07531210.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|306858737|gb|EFM90796.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQTFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +++    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIKINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR               ID++YNAN  SMK+
Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     + 
Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|297587784|ref|ZP_06946428.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
 gi|297574473|gb|EFH93193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ATCC 53516]
          Length = 454

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIEKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEI  LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEISQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPVLREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SFG   ++D+++   K     S                 +G+H   N  M++ +  +
Sbjct: 240 KTISFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R       +    F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDVAKGLKKIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +++VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLILVKASHAMQFDKLVEQIKE 453


>gi|240948410|ref|ZP_04752788.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
 gi|240297236|gb|EER47794.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus minor NM305]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L Q +    +G   +  V  IS D+R    +  FFA+KG  +D HD++  A
Sbjct: 1   MIKQTT-QQLAQTLNAKLLG-SGEIIVENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +++G   +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKT
Sbjct: 59  IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K
Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKAGGKAIVNLAHYYPEWQK 233

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                      Y+   K   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGDHELQSFCYTGEDKDSYADFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR        N      ID+SYNAN  SMK+
Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL Q        RI V+GDM E+G+ S + H ++A+ +    +  V   G     + 
Sbjct: 351 AVSVLKQYPA----FRIFVVGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+   +      +  +V++ K S S     +I  L
Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEDVIASL 456


>gi|83592290|ref|YP_426042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575204|gb|ABC21755.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 166/443 (37%), Positives = 232/443 (52%), Gaps = 4/443 (0%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
               G+ IDSR++   + F A+ G   DGH  +  A+  GA   +V+             
Sbjct: 34  WTATGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATD---R 90

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V+D L  L  LA A+R R    ++ +TGS+GKT TKEMLT AL    + +A  G+ N
Sbjct: 91  LLVVEDTLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLN 150

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NH G+PLTLARMP D D  + ELGM+H GE+  L  L RPH+A+IT +A  HL  F  +E
Sbjct: 151 NHFGLPLTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVE 210

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            IA AKAEI EG+E  GT+ LN D+ FFE L+  + A GI    SFG    AD ++    
Sbjct: 211 AIADAKAEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCA 270

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +  + +   +    +       G H A N L  L +V  L  D+ +A   L+   P  
Sbjct: 271 VDANGTAVFALIGDDPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPR 330

Query: 325 GR-GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           GR  ++       G   +ID++YNA+P S+ AA++ LS   P   GRRIAVLGDM E+G 
Sbjct: 331 GRGRRQSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGP 390

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +   H DLA++     I  V+ +G  +  L DALP S    ++   D L   + ++L  
Sbjct: 391 QAAKLHADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRP 450

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GDVV+VK S      R +  LL 
Sbjct: 451 GDVVMVKGSKGSLVSRTVTALLA 473


>gi|315641805|ref|ZP_07896809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
 gi|315482480|gb|EFU73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus italicus DSM 15952]
          Length = 447

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 191/469 (40%), Gaps = 29/469 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++ Q              V  +  DSR +     F  + G   DGH FI  A+  
Sbjct: 1   MFTVKEVAQLFGLEV---EDSRIVTSVEFDSRKVVAGSLFVPLAGAR-DGHTFINQAIAS 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA     +           I V  V D L A+ KLA   R      ++AITGS GKTTTK
Sbjct: 57  GAIATFWS----VQDQPEDITVIQVTDCLEAMQKLATYYRELLAPKVVAITGSNGKTTTK 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    LS   +TY   G+YNN IG+P T+  MP D    + E+GM H G++  L+ + R
Sbjct: 113 DLTASVLSQAFRTYKTQGNYNNEIGLPYTILHMPKDTKVVVLEMGMDHAGDLTTLSTIAR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA IT I  AH+ N     +IA  K EI   L   G + +  D+     L        
Sbjct: 173 PDIAAITMIGEAHIENLGSRAKIAQGKMEIATALAADGCLIIPCDEPLLAPLVQGMTQQV 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +      G     D      ++ +EQ+   V+ Q   +             N+   L   
Sbjct: 233 VTFGIDAG-----DVAAHILEEHAEQTVFSVKEQDYRIP-------LLGTYNVKNALIAY 280

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           SI      T  +  +     +    R +    +    L+ + YNANP +M   +    ++
Sbjct: 281 SIGEKFGVTPEQIANGLKNVQVTKNRTQWLEMENGTRLLSDVYNANPTAMGLVLDSFGKL 340

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                GRR AVL DM E+G  S   H  +A+ +  Y    ++L G  +  L   L     
Sbjct: 341 PVQ--GRRFAVLADMLELGPESSVMHAAMADHVQNY--DGLFLVGEQMDYLAKELAARDS 396

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                ++ +  +  L   ++  L   D++++K SN     ++++ L  E
Sbjct: 397 DVPLELYDANELAALIEDLKQLLQPADMLLLKGSNGMKLNQVVDALTSE 445


>gi|154488896|ref|ZP_02029745.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
 gi|154083033|gb|EDN82078.1| hypothetical protein BIFADO_02205 [Bifidobacterium adolescentis
           L2-32]
          Length = 489

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 140/491 (28%), Positives = 205/491 (41%), Gaps = 34/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +  ++ QA+ G      +       ++    DSR I P   F AI G   DGHDF
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAF-TDSRQIVPGSVFVAIAGERVDGHDF 58

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++  +     +P   V++ + AL  LA     R     S  T+I
Sbjct: 59  VPKVGAQGAVAALVDHEIAGA----QVPQIVVENTVKALGALAKHNIERRRALESPFTVI 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVVEMGANH 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D  
Sbjct: 175 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEH 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + A + A  +       +    D              S++     G+   V     G
Sbjct: 235 VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLGICG 294

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNA 348
            H   N L    +   L   +D     LS                     FTLID+S+NA
Sbjct: 295 QHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDSFNA 354

Query: 349 NPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +            +  RIAVLG M E+G      H D+           +  
Sbjct: 355 NPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADALVT 414

Query: 407 SG----FHVLALKDALPRSIH--------VHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452
            G      + AL +A+ +           V ++   +     +       +G VV++K S
Sbjct: 415 VGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATDHEGTVVLLKGS 474

Query: 453 NSCGFYRLINL 463
           ++ G   L   
Sbjct: 475 HASGLSALAER 485


>gi|328945543|gb|EGG39694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1087]
          Length = 456

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVVAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAHLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYTALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|303250493|ref|ZP_07336690.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244815|ref|ZP_07526914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307251535|ref|ZP_07533442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307260465|ref|ZP_07542160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
 gi|302650481|gb|EFL80640.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854260|gb|EFM86466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306860999|gb|EFM93005.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306869868|gb|EFN01650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR               ID++YNAN  SMK+
Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     + 
Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|119773491|ref|YP_926231.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Shewanella amazonensis SB2B]
 gi|119765991|gb|ABL98561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Shewanella amazonensis SB2B]
          Length = 455

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 214/470 (45%), Gaps = 27/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   L  A  G   G      V+ +  DSR +     F A+KG  +DGH+F   A
Sbjct: 1   MIPL-SLTQLAAATHGRLCG--EDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++V  ++      L++P   V D   A+ ++    R       +A+TGS GKT
Sbjct: 58  AAAGASALLVEREL-----PLALPQLVVADTQKAMGQIGALVRDSVNPVCVALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   LS         G++NN IGVPLTL R+    ++G+FELG +H GEI + + 
Sbjct: 113 SVKEMVATVLSQHHSVLFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP ++++  +  AHL  F     +A AK+EI+  L + G   +N DD + E +  K  
Sbjct: 173 LVRPSVSLVNNVGSAHLEGFGSEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNK-- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            L  K + +FG    A+   R+       +    +   G  + V     G H   N L T
Sbjct: 231 -LKGKRVLTFGLGAGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALAT 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             I   L   +      L+   P +GR    +     G   L+D+SYNANP S+ AAI  
Sbjct: 290 AAICIALGLPLQEIAAGLAKLAPVKGRMMPRQ----LGRLLLVDDSYNANPNSVGAAIDW 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L +IS +       VLGD+ E+G+ +   H +L +      +  ++  G        A  
Sbjct: 346 LKEISTNR----TLVLGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFG 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLV--DGDV-VVVKSSNSCGFYRLINLLLE 466
                 + E +D L   + + +   +GDV ++VK S S    R++  L  
Sbjct: 402 SK----HFEELDALVSELINYINGVEGDVTLLVKGSRSAAMERVVEALTA 447


>gi|295102286|emb|CBK99831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Faecalibacterium prausnitzii L2-6]
          Length = 457

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 188/442 (42%), Gaps = 14/442 (3%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      +  ++ DSR + P   F A  G  +DGHDF   A+++GA  VV+N  +     
Sbjct: 17  GFADSQPIGLVTTDSREVCPGCIFVAFPGERFDGHDFAAKALEEGAAYVVLNHPVEGVPA 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
             ++      D   A+  +    R +    ++ +TGSVGKTTTK+M   A++    T   
Sbjct: 77  ERAV---ISPDSYHAMMVMGANYRGQFHPKVVGVTGSVGKTTTKQMTYAAIAGFGNTIKT 133

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+ NN +G+P T+ R+  D ++ + E+GMSH GEI  L    RP + +IT I  +H+ N
Sbjct: 134 EGNQNNELGLPRTMFRIGRDTEYAVVEMGMSHAGEIERLAKCARPDVGIITCIGVSHIGN 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               E I  AK EI  GL +   + LN DD F   L+  +    ++ ++     +NAD  
Sbjct: 194 LGSQENICKAKLEICAGLAEGSPLVLNGDDPF---LRKAALPTHVRPVWFSLGDENADVC 250

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               +Q  +     +  +      V             +     +         + A   
Sbjct: 251 ALDVRQEGDGMAFTLCDKNAGRYEVTIPAMGRHNVANALAAYAAATRLGLAPEGVIAGLA 310

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                 +    +  ++ G   +I++ YNANP SM    + L+    +   RR A+LGDM 
Sbjct: 311 D---FEQTGMRQKIVHAGSMDVIEDCYNANPDSM---KAALAMFKEYPCKRRFALLGDML 364

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFI 437
           E+G +S   H +L    +   ++ +   G        A   +    V ++E        +
Sbjct: 365 ELGGMSAPAHEELGRQAAEAGLTALVTYGPEAARTARAAKDAGLADVVHAEDYRQAADAL 424

Query: 438 QSSLVDGDVVVVKSSNSCGFYR 459
            + +  GD ++VK+S      +
Sbjct: 425 LARMAPGDALLVKASRGMALEK 446


>gi|219870387|ref|YP_002474762.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
 gi|219690591|gb|ACL31814.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis SH0165]
          Length = 464

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L Q ++G  +G   +     IS D+R    +  FFA+KG  +D HD++  A
Sbjct: 1   MIKQTT-QQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFALKGEKFDAHDYVEKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +++G   +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKT
Sbjct: 59  IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K
Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK 233

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                      Y+   K    DF  +  +     S   +      +E+    +G H   N
Sbjct: 234 EIGDHELQSFCYTGEDKDSYVDFWAKNVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR        N      ID+SYNAN  SMK+
Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL Q        RI V GDM E+G+ S + H ++A+ +    +  V   G     + 
Sbjct: 351 AVSVLKQYPA----FRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+   +      +  +V++ K S S     +I  L
Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456


>gi|302338062|ref|YP_003803268.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635247|gb|ADK80674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 478

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 119/481 (24%), Positives = 203/481 (42%), Gaps = 31/481 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           ++  +    I         +    ++G++IDSR++ P   F A++G   DGH ++  A +
Sbjct: 8   FSAREAAAIIGAAVFSPSERKTVTIDGVAIDSRNVKPGNLFVALEGERADGHHYLSEAAR 67

Query: 63  KGAGLVVVNTD--------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
            GA  V+V+ +          A      + V  V+D L AL +L+     R    + IA+
Sbjct: 68  AGASAVLVDHEKSACVEGGWAAFATHSGLVVMTVEDPLVALQRLSRWWIDRFDTLVRIAV 127

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L   LS    T    G+ N+ IG+PL L  +     FG+FELG++ +G
Sbjct: 128 TGSSGKTTTKELLGSVLSMKAPTVVNPGNLNSEIGLPLALFGVGPADHFGVFELGINRIG 187

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L+ L  P   +IT I  AH     G E +   K ++   ++  G +F   DD   +
Sbjct: 188 EMELLSSLYHPQHLLITNIGTAHSGPLGGKEGVFREKTKVLAHMQGEGFVFYPEDDDRID 247

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK++  +L  +       +     +    +    +            +           
Sbjct: 248 ALKSRYPSLAFRPYGPATLTGLETVEDLGTEGWLLRYRGVSIHYPLLGQHNLQ------- 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                   I       V   +   ++           RC L +G  +++D+ YNAN  S 
Sbjct: 301 ---NGCGVIALAFELGVSPELIGAALSA---AAPVAGRCRLLRGAISVLDDCYNANLDSS 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
           +     ++ +    +GR++ V G M E+G  S   H    + ++   +  V+L G     
Sbjct: 355 ERVFEYIASLPW--DGRKVIVFGSMKELGSSSLDAHRAAGQAIASSGVDAVFLYGEETSE 412

Query: 411 -VLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               + D    S  +H+SE   D L   + + + +GD+V++K S + G  RLI LL  E 
Sbjct: 413 SFREISDQGSMSQILHFSENQFDELSERLLAFVREGDLVLLKGSRTMGLERLIPLLQHEE 472

Query: 469 P 469
            
Sbjct: 473 K 473


>gi|282862162|ref|ZP_06271225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
 gi|282563187|gb|EFB68726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           sp. ACTE]
          Length = 473

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/476 (26%), Positives = 191/476 (40%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP-QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G    +      V G + IDSR +     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGQPHDMPDRSLTVTGPVVIDSREVRQGSLFAAFAGERVDGHDYAR 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   +  P   VDDV+ AL  LA A   R    ++A+TGS G
Sbjct: 60  -------AAVEAGAVAVLAARPVGCPAIVVDDVVAALGALACAVVERLGTAVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQLLERKAPTVWTPGSLNNEIGLPLTALTATAETRHLVLEMGARGVGHIHYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P I ++  +  AHL  F   E IA AK E+ E L + G   LN DD     + A+
Sbjct: 173 AQLTPPTIGLVLNVGSAHLGEFGSREAIAQAKGELVEALPEDGVAVLNADDPLVRAMAAR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A     +  FG++ +AD +    +   +               V   +          
Sbjct: 233 TQA----RVVLFGEAPDADVRGENVRLTDDGRPAFALHTPTGCSDVTLRLY-GEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SMKAA+ 
Sbjct: 288 LAAAAVAHELGMSVTEIAEALSVAGTLSRWRMEVTERPDGVTVVNDAYNANPESMKAALR 347

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+ +   +    GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALAAMGKAARAEGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVALALLE 463


>gi|304413639|ref|ZP_07395083.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
 gi|304283730|gb|EFL92124.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Candidatus Regiella insecticola LSR1]
          Length = 521

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 142/529 (26%), Positives = 206/529 (38%), Gaps = 75/529 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PL +   L Q +    IG         V  + IDSR ++    F A+KG  +DGHDF 
Sbjct: 1   MIPL-SLRQLAQVLNAELIGIEHASDHALVTQVVIDSRKLSTGCLFVALKGARFDGHDFA 59

Query: 58  LHAVQKGAGLVVVNTDMVASI--------------------------------------- 78
             A+  GA  ++VN   +                                          
Sbjct: 60  EEAITAGAIALLVNKIAMNKQQVDPSLYPSPLKLPFGCQGDRPMSVDNYVIRRAPAANNA 119

Query: 79  ------------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                         L IP   V D   AL +LA   R +  A ++A+TGS GKT+ KEM 
Sbjct: 120 TASKAKGISLKSVPLPIPQLVVQDTRLALGQLASWLRQQVSARVVAVTGSSGKTSVKEMT 179

Query: 127 TIALSSIK-------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
              L   K             G+ NN IGVPLTL R+  + DF + ELG +HLGEI +  
Sbjct: 180 AAILRQCKTPTKKNSHVLYTSGNQNNDIGVPLTLLRLTAEHDFVVIELGANHLGEIAYSA 239

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP   ++  +A AHL  F  +  +A AK EIF  L   G   +N D   +   +   
Sbjct: 240 GLSRPESVLVNNLAAAHLEGFGSLAAVAQAKGEIFSVLPPQGYAIINADSHDWPHWQGML 299

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +     F      DF     K  S+ +   +     S+E+    +G H   N L  
Sbjct: 300 SQQRVWRFA-FNAGDGIDFFASDIKVDSQTTRFILHSPLGSVEISLSLLGRHNVANALAA 358

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + AD++   K L+  H   GR       L      L+D+SYNAN  SM AA  +
Sbjct: 359 AALAMSVGADLEAIAKGLAQSHATPGRLF---PILLAEGKLLLDDSYNANVGSMIAAAQL 415

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+++     G R+  +GDM E+GE +   H  +        I  V   G     L  A  
Sbjct: 416 LAEMP----GYRVMAVGDMGELGETAVDCHRQVGSAARQAGIDKVLSVGTLSQQLSSA-- 469

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCGFYRLINLLLE 466
            S +  +      L   ++  L    ++  ++K S S G   ++  L E
Sbjct: 470 -SGNGEHFHDQVVLTARLKQLLQAHPIITLLIKGSRSSGMENVVQALQE 517


>gi|324993371|gb|EGC25291.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK405]
          Length = 456

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKEGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLDQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSKLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREELTPADQILLKGSNSMNLAKLVEDLED 454


>gi|119026123|ref|YP_909968.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765707|dbj|BAF39886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 489

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 140/491 (28%), Positives = 205/491 (41%), Gaps = 34/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ +  ++ QA+ G      +       ++    DSR I P   F AI G   DGHDF
Sbjct: 1   MMPM-SLTEIAQAVDGRLMPTTVPTDEPVAISAF-TDSRQIVPGSVFVAIAGERVDGHDF 58

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++  +     +P   V++ + AL  LA     R     S  T+I
Sbjct: 59  VPKVGAQGAVAALVDHEIAGA----QVPQIVVENTVKALGALAKHNIERRRALESPFTVI 114

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK++L   LS +  T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 115 GITGSVGKTTTKDLLKSLLSKMGDTVAPVGSFNNEIGLPLTSLKVNAGTRFLVAEMGANH 174

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI  GL   G   LN +D  
Sbjct: 175 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVRGLVPGGLTILNANDEH 234

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + A + A  +       +    D              S++     G+   V     G
Sbjct: 235 VAAMSAIAPADVLWFGLPQKEDAQLDTTALDVRCDDLDHPSFVLEDKTGRHANVTLGICG 294

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNA 348
            H   N L    +   L   +D     LS                     FTLID+S+NA
Sbjct: 295 QHNVMNALAAATVAMTLGMPIDAVASGLSDVTSISPHRMAVSTVTKPETSFTLIDDSFNA 354

Query: 349 NPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +            +  RIAVLG M E+G      H D+           +  
Sbjct: 355 NPDSMKAGLDGLSRWHAGAEQQPFRIAVLGAMLELGPDEHRLHEDVGRYAVEGGADALVT 414

Query: 407 SG----FHVLALKDALPRSIH--------VHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452
            G      + AL +A+ +           V ++   +     +       +G VV++K S
Sbjct: 415 VGSTSDEALDALAEAMAQGGKAVAADPTMVQWAHDAEQADRMVTRLATDHEGTVVLLKGS 474

Query: 453 NSCGFYRLINL 463
           ++ G   L   
Sbjct: 475 HASGLSALAER 485


>gi|307709605|ref|ZP_07646058.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
 gi|307619641|gb|EFN98764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus mitis SK564]
          Length = 457

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     + I     +     DSR I  ++ F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLANLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+ +   +    D      L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMAEGSLLLAPADPIVEAYL------PA 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   I 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYIA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTENQDQFEDLVKQVKESLGANDQILLKGSNSMNLAKLVESLENEDK 457


>gi|295677768|ref|YP_003606292.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
 gi|295437611|gb|ADG16781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1002]
          Length = 470

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 196/468 (41%), Gaps = 19/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +++       I G S+          +S DSRS  P + F AIKG  +D HDF+   
Sbjct: 1   MT-MFSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++    V+V      +  + S+P   V D   AL  LA   R +    ++A+TGS GKT
Sbjct: 60  AERNVAAVLVAR----TPENWSVPAIRVADTREALGALARGWRRQFDLPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETEQ 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +AV+      H    + +E +A   A +   L   GT     DD++  + + 
Sbjct: 176 LAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGTAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  +          +   +   + +      ++V    +G H A N L
Sbjct: 235 --VAATGNRIIDFALNNAERTTEAAVQGTFDGKRLSIDTPQGRLDVTLQVLGNHNAHNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +D   + L  F   +GR +  + AL      T+ID++YNANP SM+AA
Sbjct: 293 AATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+      E  R+ V+GDM E+G+    FH ++        +  ++  G        
Sbjct: 353 IDVLA----SRESPRVLVMGDMGEVGDNGPVFHREIGAYAKERGVDALYAMGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           A       H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 409 AYGAG--AHHVADVGALVAQLQQAGFGAAATLLVKGSRFMQMERVVDA 454


>gi|148997721|ref|ZP_01825285.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|168575141|ref|ZP_02721104.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|307068295|ref|YP_003877261.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756220|gb|EDK63262.1| cell division protein FtsZ [Streptococcus pneumoniae SP11-BS70]
 gi|183578837|gb|EDT99365.1| D-Ala-D-Ala adding enzyme [Streptococcus pneumoniae MLV-016]
 gi|306409832|gb|ADM85259.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 457

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAYLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQVLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS     L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKGSNSMNLAMLVESLENETK 457


>gi|256379769|ref|YP_003103429.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
 gi|255924072|gb|ACU39583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Actinosynnema mirum
           DSM 43827]
          Length = 490

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 125/502 (24%), Positives = 185/502 (36%), Gaps = 52/502 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56
           M  L T  ++ + + G   G      V  G+  D+R + P   F A+ G   DGHDF   
Sbjct: 1   MITL-TLAEIAEIVGGRLHGTDGSPVVKAGVEFDTRKLLPGGLFLALPGERVDGHDFAAA 59

Query: 57  ----------------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-------VLG 93
                               +             VA             D       VL 
Sbjct: 60  AVAAGAAGVLAGREVPAPSVIA----------PPVAPADEHEGAYVLSGDSDGSGAAVLA 109

Query: 94  ALNKLAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           AL KLA     R      T++ +TGS GKT+TK+++   LS    T A  GS+NN +G P
Sbjct: 110 ALGKLARHVTDRLTAGGLTVVGVTGSSGKTSTKDLIAQVLSPTGATIAPPGSFNNELGHP 169

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R   D  + + EL     G I  L  +  P I  +  +  AHL  F   E +A  K
Sbjct: 170 WTALRADEDTGYLVLELSARGPGHIADLCAVAPPRIGAVLNVGTAHLGEFGSREGVARTK 229

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+ E L + G   LN DD     +  ++ A  +           A   +   +     +
Sbjct: 230 GELVEALPEDGVAVLNADDPLVLAMAERTKAKVVLVGEHSRAQVRAVDIVLDEQARPGFT 289

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                    S  V     G H   N L    +   L A        L    P      R 
Sbjct: 290 L---LTPHGSARVQLAVHGPHQVGNALTAAAVALELGATPQQVADRLGSAKPI--SAHRM 344

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPH--GEGRRIAVLGDMCEMGELSQSF 388
                    T+++++YNANP S+KAA+  L+ IS       R  AVLG M E+G  S   
Sbjct: 345 EVVDRADGVTVVNDAYNANPESVKAALKSLATISRSTTPARRSWAVLGPMAELGADSVRA 404

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDG 444
           H ++  +    +++ + + G    A+                   +      ++  +  G
Sbjct: 405 HDEIGRLAVRLDVNRLVVIGDDARAMHQGAHLEGSWGEESILVPDVAAAIELLRDEVRPG 464

Query: 445 DVVVVKSSNSCGFYRLINLLLE 466
           DVV+VK+SNS G +R+   LLE
Sbjct: 465 DVVLVKASNSYGLWRVAEALLE 486


>gi|238752428|ref|ZP_04613905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
 gi|238709361|gb|EEQ01602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia rohdei ATCC 43380]
          Length = 450

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 210/469 (44%), Gaps = 24/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L     ++   Q           +  ++ID+R +     F A+KG  +DGHDF  + 
Sbjct: 1   MSTLLNAEYIISDTQ------RNNIEITEVTIDTRQVTGGCLFVALKGERFDGHDFAEN- 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    +  P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 54  ----AVAAGAGALLVSKRLLVGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L    K     G++NN IGVPLTL R+  + DF + ELG +H+GEI + T 
Sbjct: 110 SVKEMVAAILRQCGKVLYTAGNFNNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  ++ AHL  F  +  +A AK EIF GL   GT  +N D + +   +   H
Sbjct: 170 LSRPESALVNNLSAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQETLH 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S    ++ DF   + +  ++ +   +     +  +     G H   N L   
Sbjct: 230 HKRVWR-FSSQAGEDIDFFASEVRITAQATHFTLHSPFGTQAIELPLPGRHNIANALAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + AD+    + L+      GR    + A+      L+D+SYNAN  SM AA  VL
Sbjct: 289 ALAMSVGADLAAVRQGLTQLQAVPGRLFPIQLAVG---KLLLDDSYNANVGSMTAAAQVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G+ +   H  + E      +  V   G     L DA   
Sbjct: 346 AEMP----GYRVMVVGDMAELGDTAIDCHRQVGEAAKHAGVDKVLSVGKLSQTLSDASSC 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
                + +  D L   +   L++     V++K S S     ++  L E+
Sbjct: 402 G---EHFQDKDTLAARVSELLLEHPIITVLIKGSRSAAMENVVRALQEK 447


>gi|22127504|ref|NP_670927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM 10]
 gi|45443365|ref|NP_994904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809541|ref|YP_653457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|108810582|ref|YP_646349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|145600346|ref|YP_001164422.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|150260414|ref|ZP_01917142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162419499|ref|YP_001607299.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165928217|ref|ZP_02224049.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937773|ref|ZP_02226334.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008786|ref|ZP_02229684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211996|ref|ZP_02238031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401286|ref|ZP_02306786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421922|ref|ZP_02313675.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426493|ref|ZP_02318246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167469520|ref|ZP_02334224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis FV-1]
 gi|218927747|ref|YP_002345622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis CO92]
 gi|229837058|ref|ZP_04457223.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|229840439|ref|ZP_04460598.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229843019|ref|ZP_04463169.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229900774|ref|ZP_04515898.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|270487856|ref|ZP_06204930.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294502639|ref|YP_003566701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|21960602|gb|AAM87178.1|AE013965_5 D-alanine:D-alanine-adding enzyme [Yersinia pestis KIM 10]
 gi|45438234|gb|AAS63781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774230|gb|ABG16749.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Nepal516]
 gi|108781454|gb|ABG15512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Antiqua]
 gi|115346358|emb|CAL19230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin o
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CO92]
 gi|145212042|gb|ABP41449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Pestoides F]
 gi|149289822|gb|EDM39899.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           CA88-4125]
 gi|162352314|gb|ABX86262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis Angola]
 gi|165914185|gb|EDR32801.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919828|gb|EDR37129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992125|gb|EDR44426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206742|gb|EDR51222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960059|gb|EDR56080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049311|gb|EDR60719.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054591|gb|EDR64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682113|gb|EEO78205.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Nepal516]
 gi|229689895|gb|EEO81954.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696805|gb|EEO86852.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229706001|gb|EEO92010.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Yersinia
           pestis Pestoides A]
 gi|262360669|gb|ACY57390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D106004]
 gi|262364616|gb|ACY61173.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           D182038]
 gi|270336360|gb|EFA47137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pestis KIM D27]
 gi|294353098|gb|ADE63439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Yersinia pestis
           Z176003]
 gi|320016917|gb|ADW00489.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 458

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 212/472 (44%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  + +   L   +    I    +     +  ++ID+R +     F A+KG  +DGHDF 
Sbjct: 1   MIKV-SLRFLASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFA 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GAG ++V+  ++     +  P   V D   AL + A   R +  A I+A+TGS 
Sbjct: 60  EDAIAAGAGALLVSKRLL-----VGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSS 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+ KEM    L          G++NN IGVPLTL R+  + DF + ELG +H+GEI +
Sbjct: 115 GKTSVKEMAAAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   + 
Sbjct: 175 TTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             H   +   +S   +++ DF     +   + +   +     ++ +     G H   N L
Sbjct: 235 TLHNKRVWR-FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + AD+    + L+      GR              L+D+SYNAN  SM AA 
Sbjct: 294 AAAALAMSVGADLAAVRQGLAQLQAVPGRLF---PVPLAEGQLLLDDSYNANVGSMIAAA 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+++     G R+ V+GDM E+GE +   H  + E   L  +  V   G     L  A
Sbjct: 351 QVLAEMP----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLEE 467
              S +  + +  + L   + + L       V++K S S     ++  L E+
Sbjct: 407 ---SGNGEHFQDQNTLSTRVNALLNEYPVITVLIKGSRSAAMENVVRALQEK 455


>gi|168483460|ref|ZP_02708412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043100|gb|EDT51146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 457

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ QA+     + I     +     DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQAVGAKNDVSIFEGTQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVATLSEKEIA------NHPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP + +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEETEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D      L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAQGKMQIADGMAPGSLLLAPADPIVEAYL------PA 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEAK 457


>gi|302819192|ref|XP_002991267.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
 gi|300140978|gb|EFJ07695.1| hypothetical protein SELMODRAFT_185918 [Selaginella moellendorffii]
          Length = 515

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 129/467 (27%), Positives = 209/467 (44%), Gaps = 15/467 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G        G    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGILAKQGSPG---SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    +      +      +    V D L AL+KLAV AR R +  ++ ITGS GKTTTK
Sbjct: 106 GCAGAI----GRSMPRDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + +
Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +        
Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAM----PVSP 277

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGI 302
              I  FG+S+ +D +L   +  S    ++  LQ + +       +              
Sbjct: 278 DAMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGSETTFLSCPGIHLASNACAA 337

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             + T+       A          G R R         LI+++YNANP SM  A+ +L+ 
Sbjct: 338 ACVATSLGVPLKAASESISKFSPVGMRSRLEAICSDIQLINDAYNANPMSMTVALEILA- 396

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421
            S   +GR++  LGDM E+G+ ++  H+   +     ++  +  +G       + L    
Sbjct: 397 -SVECKGRKVVALGDMLELGDFTRGAHMKAIKCCQELHVDVIGTAGPAFSDALNGLELEK 455

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 456 CEVVKCENSAALAEELTARITPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|295091958|emb|CBK78065.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Clostridium cf. saccharolyticum K10]
          Length = 476

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 20/463 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D ++A  G  +       +  ISIDSR+   +  F  + G   DGH FI+ A+++GA 
Sbjct: 6   VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAA 65

Query: 67  LVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  +           A+          VDD   AL +L    R R    ++ ITGSVGK
Sbjct: 66  AVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGK 125

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+EM+  ALS+    +    ++N+ +GVPLTL+++    + G+ ELGMS  GE+  + 
Sbjct: 126 TTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIA 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +    +AVIT +   H+ N    E I   K +I +G+   G +FLN D+     L   S
Sbjct: 186 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDND----LLGIS 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A        FG  +NAD++    +         +    + + V    +G H   N L  
Sbjct: 242 RAREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAA 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +       ++A +    +    K  +    +   T+ID++YNA+P SMKAA+ V
Sbjct: 302 ----LAVADYNGVPLEAAAEKLREFTGFKNRQQIREKQGITVIDDTYNASPDSMKAALRV 357

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS          +AVL DM E+G   + FH ++ E L+   +  +   G     + +   
Sbjct: 358 LSSFGQARRR--VAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGAR 415

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               S+        + +  F++  L  GD V+ K SNS     
Sbjct: 416 ERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 458


>gi|291087636|ref|ZP_06346982.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
 gi|291074517|gb|EFE11881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. M62/1]
          Length = 480

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 203/463 (43%), Gaps = 20/463 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D ++A  G  +       +  ISIDSR+   +  F  + G   DGH FI+ A+++GA 
Sbjct: 10  VRDAVKASHGRLLSGDADAQLAYISIDSRTAGKKALFVPLIGEKQDGHRFIMAALEQGAA 69

Query: 67  LVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            V  +           A+          VDD   AL +L    R R    ++ ITGSVGK
Sbjct: 70  AVFTSEHSEESEEVKAAAKRWPGAAFIQVDDTRRALQELGAYIRSRLTIPLVGITGSVGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+EM+  ALS+    +    ++N+ +GVPLTL+++    + G+ ELGMS  GE+  + 
Sbjct: 130 TTTREMVAAALSAGFHVFKTPANHNSQVGVPLTLSQISDTDEIGVLELGMSEPGEMTVIA 189

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +    +AVIT +   H+ N    E I   K +I +G+   G +FLN D+     L   S
Sbjct: 190 QIAAVDMAVITNVGVTHIENLGTRENILREKLKIQDGMRADGPVFLNGDND----LLGIS 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A        FG  +NAD++    +         +    + + V    +G H   N L  
Sbjct: 246 RAREGHKTVYFGTGENADYRAVDIRLERGCPSFTMVHGERRIPVTLSVMGEHNVLNALAA 305

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +       ++A +    +    K  +    +   T+ID++YNA+P SMKAA+ V
Sbjct: 306 ----LAVADYNGVPLEAAAEKLREFTGFKNRQQIREKQGITVIDDTYNASPDSMKAALRV 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS          +AVL DM E+G   + FH ++ E L+   +  +   G     + +   
Sbjct: 362 LSSFGQARRR--VAVLADMKELGPDERRFHREVGEFLAGEKVELLVTFGELAGEIGEGAR 419

Query: 420 R---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               S+        + +  F++  L  GD V+ K SNS     
Sbjct: 420 ERRPSLQTAAFTDREKMTEFLKRELSAGDCVLFKGSNSMKLGE 462


>gi|307253769|ref|ZP_07535623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258226|ref|ZP_07539969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
 gi|306863253|gb|EFM95193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867686|gb|EFM99531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
          Length = 464

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMAAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR               ID++YNAN  SMK+
Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     + 
Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|302379996|ref|ZP_07268475.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
 gi|302312222|gb|EFK94224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Finegoldia magna ACS-171-V-Col3]
          Length = 454

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 215/464 (46%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDIMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA       K  +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYINSLKCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DDS    +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDSILREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG   ++D+++   K     S                 +G+H   N  M++ +  +
Sbjct: 240 KTITFGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R       +    F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|315651130|ref|ZP_07904162.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
 gi|315486595|gb|EFU76945.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saburreum DSM 3986]
          Length = 457

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 124/466 (26%), Positives = 210/466 (45%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L+ A  G  I        + I IDSR       F  + G   D H F+      G 
Sbjct: 5   SVRELIAATGGVLIFGNEDAVFSNIVIDSREANKNSLFVPVVGEKNDAHKFLESVYDAGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + + +   + S    +I    V+D + AL  L +  R +    ++ +TGSVGKTTT+EM
Sbjct: 65  RVAISSRKDIFSKPDFNI--VLVEDTIKALQSLGIYLRSKLSLPLVGVTGSVGKTTTREM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             +ALS + K +    ++N+ +GVP+T++R+  D + GI ELGMS  GE+  +  +V   
Sbjct: 123 TALALSDL-KVFKTPNNFNSQLGVPVTISRI-TDEEIGIIELGMSLFGEMERIAKIVGCD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AH+ N    E I S K  I +G++    +FLN D+        +     I 
Sbjct: 181 SAIITNIGTAHIENLHTKENIRSEKFHIMDGMKAGSVVFLNADNDMLSNPPKR--EGIIY 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S   + + D+        +        +  +S++V  +  G H   N L+ L +   
Sbjct: 239 KFFSAKGNTDCDYYATDIVFHNAMPEFTAHICDRSIKVTLNVFGEHQVSNALVALAVAH- 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  I++ S            +  +     T+ID++YNA+P SMKA++S+L     
Sbjct: 298 ---HYNLDIESASKHLSSFRGFSHRQELIELKNLTVIDDTYNASPDSMKASLSILKDFRA 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHV 424
             +   IAVL DM E+G     FH ++ E +S       V+  G     + +     I  
Sbjct: 355 RRK---IAVLADMKELGADEVKFHREVGEFISENVKPDAVFSVGELAREIVN--CTDIFG 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL--EEF 468
              ++ + L  ++   L DGDV + K SNS   + +++ +   E+F
Sbjct: 410 KSFDSNEALEKYLLEYLEDGDVCLFKGSNSMRLFDVVDKIKNYEKF 455


>gi|51595034|ref|YP_069225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|153947000|ref|YP_001402348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|170025737|ref|YP_001722242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|186894040|ref|YP_001871152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|51588316|emb|CAH19924.1| D-alanine:D-alanine-adding enzyme [Yersinia pseudotuberculosis IP
           32953]
 gi|152958495|gb|ABS45956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|169752271|gb|ACA69789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis YPIII]
 gi|186697066|gb|ACC87695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 458

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 212/472 (44%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  + +   L   +    I    +     +  ++ID+R +     F A+KG  +DGHDF 
Sbjct: 1   MIKV-SLRFLASLLNAEYIVAESVSDDIEITEVTIDTRKVTAGCLFVALKGERFDGHDFA 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GAG ++V+  ++     +  P   V D   AL + A   R +  A I+A+TGS 
Sbjct: 60  EDAIAAGAGALLVSKRLL-----VGGPQLVVKDTRLALGQFAAWVRQQVPARIVALTGSS 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+ KEM    L          G++NN IGVPLTL R+  + DF + ELG +H+GEI +
Sbjct: 115 GKTSVKEMAAAILRQCGNVLYTAGNFNNDIGVPLTLLRLTAEHDFAVIELGANHVGEIAY 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T L RP  A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + +   + 
Sbjct: 175 TTDLSRPESALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPANGTAIINADSNDWPHWQE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             H   +   +S   +++ DF     +   + +   +     ++ +     G H   N L
Sbjct: 235 TLHNKRVWR-FSPHAAEHIDFYASDVRITPQLTSFTLHSPFGTVAIELPLPGQHNIANAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + AD+    + L+      GR              L+D+SYNAN  SM AA 
Sbjct: 294 AAAALAMSVGADLAAVRQGLAQLQAVPGRLF---PVPLAEGKLLLDDSYNANVGSMIAAA 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+++     G R+ V+GDM E+GE +   H  + E   L  +  V   G     L  A
Sbjct: 351 QVLAEMP----GYRVMVVGDMAELGETAADCHRQVGEAAKLAGVDKVLSVGTLSQILSSA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLEE 467
              S +  + +  + L   + + L       V++K S S     ++  L E+
Sbjct: 407 ---SGNGEHFQDQNTLSTRVNALLNEYPVITVLIKGSRSAAMENVVRALQEK 455


>gi|225861498|ref|YP_002743007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|225727141|gb|ACO22992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389856|gb|EGE88201.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 457

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 201/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVESLENEDK 457


>gi|169823959|ref|YP_001691570.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
 gi|167830764|dbj|BAG07680.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Finegoldia
           magna ATCC 29328]
          Length = 454

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 130/464 (28%), Positives = 212/464 (45%), Gaps = 18/464 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + +              V GIS D+R+I     F A++G ++DG ++I  A +KGA
Sbjct: 5   NLKTITELTNTIINEKYHDVMVKGISTDTRTIQKDNMFIALRGDNFDGQNYIEMAFEKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VVN D          PV  VD+    +  LA          +IAITGS GKTTTK++
Sbjct: 65  SCCVVNRDYR---NINDYPVIEVDNTKEFMMDLARGYISSLDCKVIAITGSNGKTTTKDI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K      +YNN IG+  T+  +  D +  + E+G  + GEIR LT++  P 
Sbjct: 122 MSSLLKEKYKVVKTQKNYNNEIGLSKTIFDIDDDTEVAVLEMGTENFGEIRQLTNIAHPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  +HL N    E IA AK EI EGL++ G   LN DD     +K +      +
Sbjct: 182 IAMITNIGDSHLLNLKTKENIARAKFEILEGLKEDGIFILNNDDPILREVKQEYKLP--E 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G   ++D+++   K     S                 +G+H   N  M++ +  +
Sbjct: 240 KTITLGIKPDSDYRMEMIKADETGSTFS----INDHVFNIELLGHHQMYNATMSIIVAEL 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D     K L        R       +    F ++++SY +NP S+ + +     +  
Sbjct: 296 MGLDYSDIAKGLKNIELTGMRN----ELILLDKFHILNDSYKSNPQSLTSCLETAYGL-- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           HG  R+IAVLGDM E+G+   + H ++ + ++   I +V  +G     +      +    
Sbjct: 350 HGYSRKIAVLGDMLELGDNEITLHKNIGKSINPEKIDYVLATGPLAENIIKGARTNFAED 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y ET + L   +Q  +VD  +V+VK+S++  F +L+  + E
Sbjct: 410 KVFYFETKEELLEKLQELIVDNTLVLVKASHAMQFDKLVEQIKE 453


>gi|225416618|ref|ZP_03761807.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
 gi|225041864|gb|EEG52110.1| hypothetical protein CLOSTASPAR_05842 [Clostridium asparagiforme
           DSM 15981]
          Length = 476

 Score =  237 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 128/470 (27%), Positives = 208/470 (44%), Gaps = 29/470 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +++A  G  +    +  +  IS+DSR+++  + F  I G   D H FI  A+  GA 
Sbjct: 6   VKQVMEAANGRLLCGNEEQVLANISLDSRNMSGLDLFVPIVGEKVDAHRFICQAIGNGAV 65

Query: 67  LVVVNTDMVASIGSLSIP----------------VFGVDDVLGALNKLAVAARLRSKATI 110
            V  +     S    +I                    V+D   AL  L    R R    +
Sbjct: 66  AVFTSAHRDISQVEKAIADWESRGNDGKAARKAAWIAVEDTKAALQSLGKYCRNRLSIPL 125

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + ITGSVGKTTT+EM+  ALS+    Y   G+ N+ +GVP+T++ +P + +  + ELGMS
Sbjct: 126 VGITGSVGKTTTREMIAAALSAGYAVYRTPGNSNSQVGVPITMSSIPSEAEIAVIELGMS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GE+  +  +     AV+T I  AH+      E I   K  I +G+   G +F+N DD 
Sbjct: 186 EPGEMEKIARVACVDSAVVTNIGIAHIEQLGSQENILREKLHIQDGMNPEGILFVNGDDP 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L A   A G + I  +G S   +++    +              K   V    +G 
Sbjct: 246 ----LLADIQAEGGRRIIRYGMSAGCEYRAEDVRLDEGYPVFTAVHGEKRTPVRLQVMGT 301

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           HM  N +  L + +    D++      +    + G  K  +        T+ID+SYNA+P
Sbjct: 302 HMVGNAMAALAVAAEYGVDMEE----AARKLGEFGGYKGRQQIHGFQGMTIIDDSYNASP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SMKA + VLS + P    R+IAVL DM E+G  +  FH ++   ++ + +  V L G  
Sbjct: 358 VSMKAGLEVLSSMKP--GARKIAVLADMKELGPDTVEFHREIGRYIAEHPVDQVLLYGEL 415

Query: 411 VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             A+ + L  +          +++ +  +++     GD ++ K SNS   
Sbjct: 416 AAAIGEGLREAGGQSPFLLCGSLEQVKEWLKRETKSGDCILFKGSNSMKL 465


>gi|332201095|gb|EGJ15166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 457

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 129/473 (27%), Positives = 201/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQDLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G  S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGNQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 455


>gi|165975472|ref|YP_001651065.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165875573|gb|ABY68621.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 464

 Score =  237 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A ++     L      +GR              LID++YNAN  SMK+
Sbjct: 294 ALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     + 
Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|229588486|ref|YP_002870605.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360352|emb|CAY47209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala ni ne ligase
           [Pseudomonas fluorescens SBW25]
          Length = 456

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 123/467 (26%), Positives = 199/467 (42%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF++L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLKAMTFNELAQALSARVL--SSDCSFDGVSIDSRNIKPGQLFVALAGPRFDGHDYLNDV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++       ++P   V D   AL +L    R      + AITGS GKT
Sbjct: 59  AAKGAVGALVQREVA----DSALPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRIGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  + ++ 
Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRVRAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +            +                H  +      N+   L
Sbjct: 235 GRKVLTFAVLNAAAD----FHASNITVDARGCPSFTLHSPQGSEHVQLNLLGNHNVANAL 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +   A   +     +     +    R    L      +ID++YNAN +S+ AAI +L
Sbjct: 291 AAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSVCAAIDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                      + VLGD+ E+G+ ++  H ++    S   +  ++  G ++    +A   
Sbjct: 351 KGFDTRK----VLVLGDIAELGDWAEQSHREVGAYAS-GKVDALYAVGPNMAHAVNAFGP 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464
                +  T   L   +  +  + D    +++K S S     ++  L
Sbjct: 406 GAR--HFATQAELIQAL--TAAEHDTHTTILIKGSRSAVMENVVAAL 448


>gi|284039185|ref|YP_003389115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
 gi|283818478|gb|ADB40316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Spirosoma linguale DSM 74]
          Length = 449

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 14/441 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--V 85
            G+S D+R I P   F A+KG ++DG+ F   A+  GA   +V+   VA     S     
Sbjct: 19  TGVSTDTRRITPDCLFIALKGGNFDGNQFAEQALASGARYALVDDAAVAERDRASGTDRC 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D L AL  LA   R      +I +TGS GKTTTKE++   LS     YA  G+ NN
Sbjct: 79  LLVADGLTALQDLARHHRQTFTFPVIGLTGSNGKTTTKELIAGVLSKKYNLYATAGNLNN 138

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL  +    +  I E+G +H  EI FL  +  P   +IT I  AHL  F GIE 
Sbjct: 139 HIGVPLTLLSLNEQHELAIIEMGANHQKEIAFLCSIALPTHGLITNIGKAHLEGFGGIEG 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +   K E+++ L +              +   +     I++  +F ++          + 
Sbjct: 199 VRIGKGELYDYLAQNAKTVFINSRDKTLMAMYRERLKSIRSETTFAEAIFYPAANPDEET 258

Query: 266 C--SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +S + V       E+  H  G +   NML  L I        + A +A++ ++P 
Sbjct: 259 TTLISESPVVVYKNASGHEITTHLPGRYNFNNMLAALAIGDYFGVSPEEANRAIADYNPT 318

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R ++     N    T++ ++YNANP+SM    + + Q +     R+  +LGDM E+G+
Sbjct: 319 NNRSQQVIKGTN----TVLLDAYNANPSSM---AAAIQQFAATPAKRKAVILGDMYELGD 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S++ H  L ++++  N   V L+G  +    + LP+    +Y      L  ++  + + 
Sbjct: 372 ESEAEHAALGKLIAESNFDLVILAGKDMRFALEYLPK---AYYFPDKFSLHNWVMDNPMA 428

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +++K S       ++  +
Sbjct: 429 DTHILIKGSRGMSLESVVPFI 449


>gi|261496958|ref|ZP_05993325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261307394|gb|EEY08730.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
          Length = 464

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 119/479 (24%), Positives = 196/479 (40%), Gaps = 30/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +       + +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    + +  K
Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 233

Query: 237 AKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 +   +         AD+     +     S   +      + +    +G H   N
Sbjct: 234 EIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A ++     L      +GR    +          ID+SYNAN  SMK+
Sbjct: 294 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL          RI  +GDM E+GE S   H ++A+      +  +   G     + 
Sbjct: 351 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468
                    H+      +  F+   +         +V++ K S S     +I+ L + F
Sbjct: 407 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460


>gi|53729123|ref|ZP_00134087.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207502|ref|YP_001052727.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           L20]
 gi|190149283|ref|YP_001967808.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307262596|ref|ZP_07544226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
 gi|126096294|gb|ABN73122.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|189914414|gb|ACE60666.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306872019|gb|EFN03733.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 13 str. N273]
          Length = 464

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR               ID++YNAN  SMK+
Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL          RI  +GDM E+G  S++ H  +A+ +   N+  V   G     + 
Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGGESEACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|27364043|ref|NP_759571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
 gi|27360160|gb|AAO09098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           vulnificus CMCP6]
          Length = 453

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 138/472 (29%), Positives = 204/472 (43%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L Q  QG  IG         +S D+R I  Q  F A+ G  +D HDF   A
Sbjct: 1   MIE-TSLSHLAQLTQGQLIGD--DAIFCTVSTDTRHIPQQALFIALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V   +      L +    V D   AL +L      R +   +AITGS GKT
Sbjct: 58  VDAGAIALLVERAL-----DLPVAQVVVKDTKIALGQLGANVHQRCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IG PLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQQKGKVLFTAGNFNNDIGAPLTLLRSEPEDDFAVIELGANHIGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  +A AHL  F  I+ +  AK EI++GL   G   +N D    E    +  
Sbjct: 173 LVRPDVALVNNVAAAHLEGFGSIDGVKQAKGEIYQGLSAGGVAIVNLDSHGGEYW-TQVL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T +S    +   +          ++   +    + + +    IG H   N +   
Sbjct: 232 ADKQVTTFSASSEQADFYATDIVLDTQGKASFVLHTPEERIPLSLGIIGQHNVANAIAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I     A +      L    P +GR    + + N     LID+SYNA+  +MKAA+ +L
Sbjct: 292 IIALQFGASLAQIQSGLLNLMPVKGRVDVQQLSDNIK---LIDDSYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              +    G+R  VLG M E+G  S + H  + E  +  N  HV   G     +      
Sbjct: 349 GSFT----GQRWLVLGYMAELGNESLALHRQVGEHAAPLNFEHVLTYGEDTRIISQL--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINLLLEEF 468
                +      L  +I+ +L +       V+VK +NS G  ++   L E +
Sbjct: 402 -CGGKHFSDHGELIEYIKQNLANENEACHTVLVKGANSAGMSKVAAALKENY 452


>gi|22299096|ref|NP_682343.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
 gi|22295278|dbj|BAC09105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 456

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 129/481 (26%), Positives = 201/481 (41%), Gaps = 36/481 (7%)

Query: 1   MNPLW-------TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M P W       T   + QA+        P   + GI  DSR IA    F A++G  +DG
Sbjct: 1   MQPHWRGKIVNTTLGAIAQALG--LDTTHPNLPITGICTDSRQIAAGNLFVALRGETFDG 58

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           H F+  A   GA  ++V   +     S  +P   V + L A  +L    R +  A +IA+
Sbjct: 59  HQFVDQAAAAGAIALMVEAPL-----SSDLPQLQVANTLSAYQRLGQWWRQQCPAKVIAV 113

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTKEM+   LS          ++NN IGVP TL ++     F + E+GM   G
Sbjct: 114 TGSVGKTTTKEMIAAVLSHYGAVLKTEANFNNEIGVPKTLLQLEPHHQFAVIEMGMRARG 173

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L+ + +P +AVIT +  AH+      E IA AK E+   +   GT  LN D     
Sbjct: 174 EIALLSQIAQPDVAVITNVGTAHIGRLGSREAIAQAKCELLAEMPPGGTAVLNADSPLLL 233

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              A+  +    T    G +    +Q  +      +++                      
Sbjct: 234 PTVAQVWSGRTITYGLEGGTLRGIYQPPQTLHVGGRTYTVPLAGAHHALNFL-------- 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                       +   +D     L V    E    R      +    L+DE+YNA   SM
Sbjct: 286 --------AALGVLQALDVESDRLPVQLTLELPSGRGGRYRLEPDILLLDETYNAGLESM 337

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHV 411
            AA+ +L  +        +AVLG M E+G  S SFH  +   ++  ++  +++   G   
Sbjct: 338 VAALHLLRSLPGQR---HLAVLGPMRELGAFSLSFHEQVGATVAQLDLDGLFILDQGEEG 394

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
            AL     + I      + + L  ++   L  GD ++ K+S++    R++N L + +P +
Sbjct: 395 AALAQGAGQ-IPTQQFGSHEELVEYLLRELQAGDRLLFKASHAVALDRVVNQLRQRWPKL 453

Query: 472 Q 472
           Q
Sbjct: 454 Q 454


>gi|327461646|gb|EGF07977.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1]
          Length = 456

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    ++ +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDQKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|254362465|ref|ZP_04978573.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
 gi|153094057|gb|EDN74969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica PHL213]
          Length = 464

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 119/479 (24%), Positives = 197/479 (41%), Gaps = 30/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +       + +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVEREC-----EIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    + +  K
Sbjct: 174 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              S  +   +         AD+     +     S   +      + +    +G H   N
Sbjct: 234 EIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A ++     L      +GR    +          ID++YNAN  SMK+
Sbjct: 294 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL          RI  +GDM E+GE S   H ++A+      +  +   G     + 
Sbjct: 351 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468
                    H+      +  F+   +         +V++ K S S     +I+ L + F
Sbjct: 407 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 460


>gi|238786719|ref|ZP_04630520.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
 gi|238725087|gb|EEQ16726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia frederiksenii ATCC 33641]
          Length = 440

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 127/447 (28%), Positives = 203/447 (45%), Gaps = 18/447 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  ++ID+R +     F A+KG  +DGHDF        A        +V+    + 
Sbjct: 7   DNVDITEVTIDTRQVTAGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVG 61

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            P   V D   AL + A   R +  A ++A+TGS GKT+ KEM+   L          G+
Sbjct: 62  APQLVVKDTRLALGQFAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGN 121

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  ++ AHL  F  
Sbjct: 122 FNNDIGVPLTLLRLTPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLSAAHLEGFGS 181

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +  +A AK EIF GL   GT  +N D   +   +   H   +   +S   +++ DF    
Sbjct: 182 LAGVAQAKGEIFAGLPANGTAIINADSHDWPHWQETLHNKRVWR-FSPHAAEDIDFYASD 240

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +   + ++  +      +++     G H   N L    +   + AD+    + L+    
Sbjct: 241 VRITPQTTYFILHSPFGIVDIELPLPGRHNIANALAAAALAMSVGADLAAVRQGLTQLQA 300

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR    + A       L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G
Sbjct: 301 VPGRLFPIQLAAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMAELG 353

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + +   H  + E      +  V   G   LAL DA   S    + +    +   +   L+
Sbjct: 354 DTAVDCHRQVGEAAKQAGVDKVLSVGTLSLALSDA---SECGEHFQDKSAIVTRVSELLL 410

Query: 443 DGDV--VVVKSSNSCGFYRLINLLLEE 467
           +  V  V++K S S     ++  L E+
Sbjct: 411 EHPVITVLIKGSRSAAMENVVRALQEK 437


>gi|59712812|ref|YP_205588.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
 gi|59480913|gb|AAW86700.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase [Vibrio
           fischeri ES114]
          Length = 452

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 214/471 (45%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +    ++ +A  G  +G      ++ +S DSR I  +  F A+ G  +D HDFI   
Sbjct: 1   MITML-LSEIAKACDGRLVG--ADCQISSVSTDSRHIDEEGLFVALIGERFDAHDFIPAV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++V+ ++       ++P   V D   AL  +A            A+TGS GKT
Sbjct: 58  QEQGATALLVSKEV-----DTTLPQVIVSDTQKALGLVAKHVHQVCHTFTFALTGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T 
Sbjct: 113 TVKEMLASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P++A++  IA AHL  F  IE +A AK EIFEGL++ G    N D +      +   
Sbjct: 173 LAQPNVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLQENGIAIYNLDSNGLPKWSSLF- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + +       +ADF     +     +   ++     +++V    IG H   N +  
Sbjct: 232 -EGKQVVSFAMDDSSADFYASNIEVNAIGEPSFQLNTPKGNIQVSLGIIGKHNVANAVAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +     A ++   + L      +GR      A       +ID++YNA+  +MKAA+ +
Sbjct: 291 AALAIQAHASLNDIQQGLQELGSVKGRVAVETLASGLK---VIDDTYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + +   
Sbjct: 348 LGGFK----GQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
              +  + ET   L  ++   L     +   V+VK +NS     +++ L E
Sbjct: 402 --CNGRHFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 450


>gi|332361732|gb|EGJ39536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1056]
          Length = 456

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 203/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLMAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    ++ +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---I 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPLG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|261493186|ref|ZP_05989715.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261311149|gb|EEY12323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 466

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 119/479 (24%), Positives = 196/479 (40%), Gaps = 28/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + + +    IG   +  V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-QQIAEILNAKLIGNG-ETVVETTSTDTRQAVENGLFFALKGENFDAHHYLQNA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +G   VVV  +       + +P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VAQGCVAVVVERECE---CEIDVPQLVVADTRLALGELAKWLKAKLNPKTVAMTGSSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVP+TL R+     + + ELG +H+GEI 
Sbjct: 116 TVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYAVIELGANHIGEIA 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL++ G   +N    + +  K
Sbjct: 176 YTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENGKAIVNLAFYYPQWQK 235

Query: 237 AKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 +   +         AD+     +     S   +      + +    +G H   N
Sbjct: 236 EIDSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQGEIAIDLPYLGKHNVSN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A ++     L      +GR    +          ID+SYNAN  SMK+
Sbjct: 296 ALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQI---NDHCLFIDDSYNANVDSMKS 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AISVL          RI  +GDM E+GE S   H ++A+      +  +   G     + 
Sbjct: 353 AISVLENYPA----YRIFAVGDMAELGEESSKCHQEVADFAKNAALDLIVSFGKESAVIS 408

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLLLEEF 468
                    H+      +  F+   +         +V++ K S S     +I+ L + F
Sbjct: 409 QQAE-----HHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKMETVISELCKPF 462


>gi|322392711|ref|ZP_08066171.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
 gi|321144703|gb|EFX40104.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus peroris ATCC 700780]
          Length = 455

 Score =  236 bits (602), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 204/473 (43%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ + +     + +     +N    DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVARVVGAKNDVTVFLDDSLNKAEFDSRLIAEGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L +   ++       S P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAALTLSEKEVA------SHPYILVDDVLTAFQALAAYYLQKTGVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTNYKTYKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T I  AHL+ F    EIA  K +I +G+ + G +    D      L  K   + 
Sbjct: 176 PKTAIVTLIGEAHLAFFKDRSEIAKGKLQIVDGMPEGGLLLAPSDSIVDSYLPTKQQVVR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          +L        +  +  +       +     G + A N ++   + 
Sbjct: 236 ----------FGQGAELEVTDLVERKDSLTFKTNFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  +         ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVPEEQIHQAFQNLELTRNRTEWKKATNGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G+++AVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKLAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  + +   ++ SL   D +++K SNS    +L+  L E+
Sbjct: 403 IGHVYYFKKTADEDQFEAMTKQVKESLGAHDQILLKGSNSMNLAKLVESLQED 455


>gi|225857286|ref|YP_002738797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
 gi|225725342|gb|ACO21194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae P1031]
          Length = 457

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T +++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIYEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGA-LDGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLTPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQIILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK 457


>gi|296454436|ref|YP_003661579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296183867|gb|ADH00749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 483

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 205/484 (42%), Gaps = 26/484 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114
             ++GA + +V+ ++     S  +P   V D + AL +LA     R R       II +T
Sbjct: 60  TAEQGATVAIVDHEV----ESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +   +    +       +            +     +  V   G    V     G H   
Sbjct: 236 MAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353
           N L    +        +T  + L+  H              +   FTLID+S+NANP SM
Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           KA ++ L   + +       V  LG M E+G    + H  +    +   I  +   G   
Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVGSAQ 415

Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459
             H+ AL  AL           V     +D     +          VV++K S++ G   
Sbjct: 416 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVVDLARNHPDAVVLLKGSHASGLSA 475

Query: 460 LINL 463
           L   
Sbjct: 476 LAER 479


>gi|303251836|ref|ZP_07338007.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249137|ref|ZP_07531144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
 gi|302649266|gb|EFL79451.1| UDP-MurNAc-pentapeptide synthetase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854425|gb|EFM86621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
          Length = 464

 Score =  236 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + A ++     L      +GR              LID++YNAN  SMK+
Sbjct: 294 ALAATSLAMAVGAGLNAVKAGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     + 
Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|322513879|ref|ZP_08066958.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120278|gb|EFX92225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 464

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   + G   G      V   S D+R       FFA+KG H+D H ++ +A
Sbjct: 1   MIKLTT-NEIADILSGQLSGNGG-VMVETTSTDTRQAVENGLFFALKGEHFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G   VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGCVAVVVEREC-----EISVPQIVVQDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTVCEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTAITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYTGSDQDSYADFWAENVELDLSGSHFTLHSPQGEIEINLPYLGAHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD++     L      +GR              LID++YNAN  SMK+
Sbjct: 294 ALAATSLAMAVGADLNAIKVGLEQRSQVKGRLYPVEV---NQHCLLIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++VL          RI  +GDM E+G+ S + H  +A+ +   N+  V   G     + 
Sbjct: 351 AVAVLKNYPA----FRIFAVGDMAELGDESAACHQQVADFVREANLDLVVSFGQQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----GETAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLISAL 456


>gi|307707460|ref|ZP_07643942.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
 gi|307616412|gb|EFN95603.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus mitis NCTC 12261]
          Length = 457

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 204/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +   + + +     +     DSR IA  + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNNVSLFADAQLEKAEFDSRLIATGDLFVPLKGAR-DGHDFIEIAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +    +       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKKVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMSSNSLLLAPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLIERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDTVIFYGEDIAELAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGVNDQILLKGSNSMNLAKLLESLENEAK 457


>gi|152988693|ref|YP_001350324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
 gi|150963851|gb|ABR85876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PA7]
          Length = 458

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 194/468 (41%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F   K
Sbjct: 175 YTVGLTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFATWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +    +   ADF     ++ +                V   +        
Sbjct: 235 AR--ANGRPLLTFSLEQAQADFHAADLQRDARGCMGFRLHGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I     I     GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 ID----ILGGFSGRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMANAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGEAGR--HFADQASLIRALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|254424815|ref|ZP_05038533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
 gi|196192304|gb|EDX87268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Synechococcus sp. PCC 7335]
          Length = 455

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 208/468 (44%), Gaps = 28/468 (5%)

Query: 6   TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  ++ + +       + I  Q    G++ D+R++   E F A+ G  +DGH+F   AV+
Sbjct: 7   SLGEIAKVLGVAPQACVEIETQAMATGVTTDTRTVQAGELFVALVGETFDGHEFAKQAVE 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V   + +    +++P   V D L A   L    R +    ++AITGSVGKTTT
Sbjct: 67  KGAIATIVKKGVFSKT--VTLPRIEVTDTLAAYQTLGQWWRSQCAIPVVAITGSVGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++  ALS     +    +YNN IGVP TL  +  + D+ + E+GM  L EI  LT + 
Sbjct: 125 KELVAAALSQFGTVFKTRANYNNEIGVPKTLLGLTTEHDYAVVEMGMRGLEEIALLTQIA 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+IT +  AH+        IA AK E+   L   GT  LN+DD+      A+  + 
Sbjct: 185 KPTVALITNVGTAHIGRLGSRAAIAQAKCELLRELPTDGTAVLNHDDARLMSTAARFWSG 244

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T    G                        +    +++     G H A N+L  +  
Sbjct: 245 TQITYGLEGGDVR-------------GQIAGSDIIVDGVKIPLPLPGRHNALNLLSAIAT 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  +     +  S          R +         L+DE+YNA   +  AA+ +   
Sbjct: 292 LKALNLNWQQLSQGFS----VPMPAGRSQRHQLPNDILLLDETYNAGAEATIAALEL--- 344

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPR 420
           ++     R IAVLG M E+G  S   H  + + ++   +  + +        A+ D+  R
Sbjct: 345 LADQPGTRHIAVLGTMKELGTQSVDLHRLVGKTVADLALDQLLILADPIEAKAMADSA-R 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           S+     +  D L   +++ L  GD ++ K+S S    ++++ LL++F
Sbjct: 404 SVPSQQFDNHDQLAQCLKAQLQAGDRLLFKASRSVEMDKVVDQLLKDF 451


>gi|169833765|ref|YP_001695051.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
 gi|168996267|gb|ACA36879.1| UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D- alanyl-D-alanine
           ligase [Streptococcus pneumoniae Hungary19A-6]
          Length = 457

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 127/475 (26%), Positives = 200/475 (42%), Gaps = 30/475 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +    +       + P   VDDVL A   L+     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKKVA------NHPYILVDDVLTAFQTLSAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS   KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSITYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G++    +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMDSGSLLLAPADTIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  E  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENEAK 457


>gi|85058423|ref|YP_454125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Sodalis
           glossinidius str. 'morsitans']
 gi|84778943|dbj|BAE73720.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 455

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 206/473 (43%), Gaps = 23/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFIL 58
           M P +T   +   +    +G      +  +  DSR  S A    F A+KG  +D HDF  
Sbjct: 1   MIP-FTLSAIAPVLNAERVGD--DCTILSVVTDSRAPSAAESSVFVALKGEQFDAHDFAE 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  ++VN  +      L +P   V D   AL +L    R +  A ++A+TGS G
Sbjct: 58  QAVAAGAAALLVNRRL-----PLDVPQLVVADTRRALGQLGAWVRQQVPARVVALTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KEM    L    +  A  G++NN IGVPLTL R+    DF + ELG +HLGEI + 
Sbjct: 113 KTSVKEMTAAILRQCGRVLATEGNFNNDIGVPLTLLRLTPAHDFAVIELGANHLGEIAWT 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LVRP  A++  ++ AHL+ F  +  +A AK EIF GL   G   LN D   +   +  
Sbjct: 173 TDLVRPETALVNNLSAAHLAGFGSLSGVAQAKGEIFAGLPANGCGILNADSHDWPHWQQV 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +        +   DF     +   +     +        V     G H   N L 
Sbjct: 233 LGHKAVWRFA-VQAAGGVDFFASDIESDQQGVRFTLHSPLDECPVRLPLPGKHNVANALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   + A++      L+      GR              ++D+SYNAN  SM AA  
Sbjct: 292 ACALALSVGAELPAVAAGLAQLQAVPGRLF---PIALGAGRLMLDDSYNANVGSMTAAAQ 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+++     G R+ V+GDM E+GE +   H  + E ++L  I  V   G     + +A 
Sbjct: 349 VLAEMP----GYRVMVVGDMAELGEEAAECHRQVGEAVALAGIDKVLSVGSLSHLIGEA- 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
             S    + +    L   +   L +  V  V+VK S S    +++  L E+ P
Sbjct: 404 --SGRGEHFQDKTALTARLAQLLSEQAVMTVLVKGSRSAAMEQVVRALQEKAP 454


>gi|330994427|ref|ZP_08318352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
 gi|329758427|gb|EGG74946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter sp. SXCC-1]
          Length = 463

 Score =  236 bits (601), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 158/468 (33%), Positives = 240/468 (51%), Gaps = 13/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  LW   DLL A  GH            G+SID+R++ P + F A++G + +GHD +  
Sbjct: 1   MTLLWNRADLLAATSGHFAAASGTDIAGTGVSIDTRTLHPGDIFIALRGENSNGHDHVAR 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA  VV + D           +  VDD L A+  +A  AR R    ++A+TGSVGK
Sbjct: 61  ALEAGAACVVAHEDC-----GTDPRILRVDDTLAAMQAMARYARARFGGRMLAVTGSVGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ K+ML  AL++   T+  + SYNNH GVPLTLAR+P    + + E+GM+H GEI  L 
Sbjct: 116 TSVKDMLHAALAACGPTHCAVASYNNHWGVPLTLARLPAGAAYCVCEIGMNHAGEIAPLA 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRP +AV+TT+A +HL     +E IA  KAEI   L + G   +       +    ++
Sbjct: 176 AMVRPDVAVVTTVASSHLGLMGSVEAIAREKAEILLALHRGGIGIIPDGV-SGQAFFERN 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    T++  G  +         +  +  S   ++L G   E      G HMA N ++ 
Sbjct: 235 AAQAGATVWRAGTGEGCAIVPGPVRATATGSDFSLRLPGWVGEAHVSAPGRHMAANAMLA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG      AD+  A+  L+ F P  GRG   +   ++    L+DESYNA+PAS++AA+ +
Sbjct: 295 LGAACAAGADMARAVAGLATFRPGAGRGAMTKVMQDKVA--LLDESYNASPASVQAALDL 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  ++P   GRR+AVLGDM E+G  +   H+ L       N   V+  G ++  L D LP
Sbjct: 353 LGLVAP---GRRVAVLGDMLELGAFAGHEHVSLLP-AVRANADIVFCCGPNMKTLFDTLP 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S+   ++     L   ++++L  GD V+VK S       ++  L  +
Sbjct: 409 PSLRGAWTPDSGQLAPLVRAALRAGDTVMVKGSLGSRMRHVVASLQAD 456


>gi|325694084|gb|EGD36002.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK150]
          Length = 456

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 202/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    ++ +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELKLTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454


>gi|163741579|ref|ZP_02148970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385313|gb|EDQ09691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 470

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 169/448 (37%), Positives = 241/448 (53%), Gaps = 10/448 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+RSIA  + F A+K    DGH+F+  A++KGAG  +V+        S   
Sbjct: 20  DWRVDGISIDTRSIAEGDLFVALKAAR-DGHEFVAQALEKGAGAALVSR--RPEGVSEDA 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDDV   L  L  A R R+ A +IA+TGSVGKT+TKEML   LS   +T+A + SY
Sbjct: 77  PLLLVDDVQTGLEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + E+GM+H GEI  L    RPH+A++TT+AP HL  F GI
Sbjct: 137 NNHWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGI 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           E IA+ KA I +GLE  G   LN D       + +  +  +         G         
Sbjct: 197 EGIAAEKAAIMDGLEPGGVAILNADIAEAPILQSVAERVTSDVQWFGTGTGPIAPTYHLT 256

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               +  E   + +   G++  +    +G H A N L  L  ++ L  D+  A+++LS++
Sbjct: 257 GTTLRGDETEAVVMLPGGQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLW 316

Query: 321 HPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            P  GRG R   +    QG   L+D+SYNANP S+ AA++VL+       GRRIA LGDM
Sbjct: 317 SPVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATP--CAGRRIAYLGDM 374

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G   Q  H DLA++ ++  +  +   G  + AL  ALP      +  T   +   + 
Sbjct: 375 KELGPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPADKRGGHYATSHDVRADLA 434

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +  GDVV+ K S S    ++++ + E
Sbjct: 435 GHIAAGDVVLAKGSLSMALAKVVDGIRE 462


>gi|126665250|ref|ZP_01736233.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
 gi|126630620|gb|EBA01235.1| UDP-N-acetylmuramyl pentapeptide synthase [Marinobacter sp. ELB17]
          Length = 459

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 138/468 (29%), Positives = 205/468 (43%), Gaps = 18/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   ++  + +Q +Q       P     N ++ D+RS+ P + F A++G ++DGH F+  
Sbjct: 1   MMRAFSLAEAVQWLQPDCHFDGPDKLTFNAVNTDTRSLLPGQLFVALRGENFDGHRFLQK 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A ++GA   VV+    A    + +P   V D L AL +LA   R  S AT+IAITGS GK
Sbjct: 61  AQEQGASAAVVDCIDAA----VDLPQLLVSDTLIALGELATRHRATSNATLIAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT +EM    L  +       G+ NNHIGVPLTL  +  +  FG  ELG S L EI +  
Sbjct: 117 TTVREMTGAILQQMGPALITQGNLNNHIGVPLTLFGLAPEHRFGAIELGASGLNEIAYTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+P +A++T    AHL  F   + I  AK EI +G+   G + LN DD  F+    ++
Sbjct: 177 AMVKPQVAILTNAGQAHLEGFGSYQNIVLAKGEIIDGVADDGLVVLNRDDPAFDQWLVRA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + ++   G          K    +          G   ++     G H   N  M 
Sbjct: 237 GRRRVASVSRAG----HAGADYKVIAGAGGQVQISGPDGWLCDLRLGLEGEHNLSNAAMA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L A  +     L      +GR      A     +TLID+SYNANPAS+KAA++V
Sbjct: 293 AAAARELGATNEHIKAGLEQVLAVKGRLHIQPLAQG---WTLIDDSYNANPASIKAALAV 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+         RIAVLG M E+GE +   H ++A+      I  +   G           
Sbjct: 350 LA----KRPSPRIAVLGAMAELGEQAAQLHREVAQYARDLGIERLLAVGPGCEGYGRGF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               V    + D     +  +      V+VK S S     +   +  +
Sbjct: 405 -GATVEICASHDQAINAVLKNTQVPATVLVKGSRSSAMEIVAEGIKNK 451


>gi|322389128|ref|ZP_08062691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321144170|gb|EFX39585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 504

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 199/476 (41%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   +     I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 49  MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 105

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 106 AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 159

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 160 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 219

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L  K 
Sbjct: 220 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPEKQ 279

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +              D ++   +    +  +  +       +     G + A N ++ 
Sbjct: 280 TVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 329

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +         R +  + +       ++ + YNANP +M+  +  
Sbjct: 330 AYVALQEGVSEAAIRDSFETLQLTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 386

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 387 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 446

Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 447 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 502


>gi|328542962|ref|YP_004303071.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [polymorphum gilvum SL003B-26A1]
 gi|326412708|gb|ADZ69771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polymorphum gilvum SL003B-26A1]
          Length = 476

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 206/471 (43%), Positives = 277/471 (58%), Gaps = 3/471 (0%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  PLWT    + A  G  +G VP G + GISIDSR++ P +AF AI+G  +DGHDF+  
Sbjct: 1   MTQPLWTRDAFVDATGGSVLGDVP-GAIGGISIDSRTLQPGDAFVAIEGERFDGHDFVAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A++ GA L +V  D +  +         VDD L AL  LA AAR RS A I+A+TGSVGK
Sbjct: 60  ALEAGAALALVARDRLERL-PADGRYVVVDDPLEALRGLARAARARSHARIVAVTGSVGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T TKE L +AL    +T+A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEI  L 
Sbjct: 119 TGTKEALRLALERSGRTHASVASFNNHWGVPLTLARMPADTDYGVFEIGMNHAGEITPLV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LVRPH+A+ITT+ P HL  F  +E+IA AKAEIF GLE  G   LN D++ F+LL   +
Sbjct: 179 ALVRPHVAIITTVQPVHLEFFGSVEKIAQAKAEIFTGLEPGGVAILNRDNAQFDLLTFLA 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G+  I +FG+   AD   ++    +  S ++ ++ G+ +       G H+ +N L  
Sbjct: 239 RNAGVTEIRTFGEDPQADAFPQRVAMQTGSSSIQARVLGQDITYKIGAPGRHLVKNSLAV 298

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L AD+  A  AL      +GRG + R  L  G  TLIDESYNANPASM+AA+ V
Sbjct: 299 LLAVVELGADLALAGIALGDLSAPKGRGAQTRLRLPAGVATLIDESYNANPASMRAALQV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        GRRIAVLGDM E+GE + + H  L E ++   +  V+ +G H+  L + LP
Sbjct: 359 LGDAQVSPPGRRIAVLGDMRELGEAADTLHAGLIEPVTAARVDLVYCAGPHMRRLWELLP 418

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 Y+E   GL   ++  L  GDVV++K S       L+  L +E+PA
Sbjct: 419 VHRRAAYAEEAAGLAAMLKEDLRPGDVVMIKGSLGTRMGPLVEALKQEYPA 469


>gi|254382596|ref|ZP_04997954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
 gi|194341499|gb|EDX22465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. Mg1]
          Length = 474

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 188/477 (39%), Gaps = 20/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++     G    I  P   ++G + IDSR +     F A  G H DGH +  
Sbjct: 1   MIAL-SLAEIADITGGRPHDIPDPSVRISGPVVIDSRKVEAGSLFAAFAGEHVDGHAYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   V DV  AL  LA A   R    ++A+TGS G
Sbjct: 60  -------RAVAAGAAAVLAARPVGVPAIVVPDVEKALGALARAVVERLGTDVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L S   T    GS NN IG+PLT  +   +    + E+G   +G I +L
Sbjct: 113 KTSTKDLIAQVLQSHAPTVWTPGSLNNEIGLPLTALQATAETRHLVLEMGARGIGHIAYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L            +  +LL   
Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPAEADG-GVAVLNADDLLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A        FG++++AD +  + +                   V   +          
Sbjct: 232 MSARTKARTVLFGEAEDADVRATEVRMTPGGRPAFTLHTPTGCSDVTLRLY-GEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 291 LAAAAVAHVLGMSAMEIATALSGAGTLSRWRMEVTERADGVTIVNDAYNANPESMRAALR 350

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 351 ALVAMGGAARATGGRTWAVLGPMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 410

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +                    ++S L  GDVV+VK+S S G  R+   LLE 
Sbjct: 411 QLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLVKASRSIGLERVALALLER 467


>gi|324990631|gb|EGC22567.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK353]
          Length = 456

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 203/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDRPVAEG------AYILVDDVLAAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    ++ S       R +  + +       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVAEAAITQSFSELELTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILETFSTIPS 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|302819065|ref|XP_002991204.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
 gi|300141032|gb|EFJ07748.1| hypothetical protein SELMODRAFT_133115 [Selaginella moellendorffii]
          Length = 515

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 135/470 (28%), Positives = 220/470 (46%), Gaps = 21/470 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + QA+ G        G    I  D+R I   + F A+ G ++DG+ F+  A+  
Sbjct: 49  IWDCQQIAQAVGGILAKQGSPG---SICTDTRGIHRGDWFLALVGRNFDGNSFLAQALAA 105

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    +      +      +    V D L AL+KLAV AR R +  ++ ITGS GKTTTK
Sbjct: 106 GCAGAI----GRSMPTDWPVGFVEVSDSLAALHKLAVDARNRYRGHVVGITGSCGKTTTK 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +AL S+   +   GS NNHIGVPLTL  +P      + E+GM+HLGEI  L+ + +
Sbjct: 162 AMVALALESLGHIHQTQGSENNHIGVPLTLLALPSFSPACVIEMGMNHLGEILELSRICK 221

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  + PAH+ N   +E++A AK E+F    +     LN DD     +        
Sbjct: 222 PSVRVVLNVGPAHMENLGSLEQVALAKGELFRDSGRGDVCILNADDPLVMAM----PVSP 277

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----SMEVVHHGIGYHMAQNMLMT 299
              I  FG+S+ +D +L   +  S    ++  LQ +             G H+A N    
Sbjct: 278 DAMIRFFGRSEVSDLRLLNGEVTSGGQGVKFTLQQQGVPGFETTFLSCPGIHLASNACAA 337

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + + L   +  A +++S F P   R +    + N     LI+++YNANP SM  A+ +
Sbjct: 338 ACVATSLGVPLKAASESISKFSPVGMRSRLEAISSNIQ---LINDAYNANPMSMTVALEI 394

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S   +GR++  LGDM E+G+ ++  H+   +     ++  +  +G       + L 
Sbjct: 395 LA--SVECKGRKVVALGDMLELGDFARGAHMKAIKCCQEVHVDVIGTAGPAFSDALNGLE 452

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                V   E    L   + + +  GDVV+VK S       +++ +  +F
Sbjct: 453 LEKCEVVKCENSAALAEELTARVTPGDVVLVKGSRGMRMELVVDAIKRKF 502


>gi|226953733|ref|ZP_03824197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|294651780|ref|ZP_06729078.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
 gi|226835521|gb|EEH67904.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter sp. ATCC 27244]
 gi|292822337|gb|EFF81242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter haemolyticus ATCC 19194]
          Length = 465

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 205/469 (43%), Gaps = 24/469 (5%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L QA QG      +P+  +  I  DSR     +AF A+KG  +D HDF+     +
Sbjct: 14  WTAEQLQQATQGEWFRQNLPKSEIKRILTDSRHAEMGDAFLALKGERFDAHDFVAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +        I    V D   AL  L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQIAIVERPI-----DSDIAQLIVKDTRLALGHLGTYRRQQNQQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  F + ELG +H GEI + ++LV
Sbjct: 129 KEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRPEHQFAVMELGANHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A I  I  AHL  F G + I  AK+EI+  +   GT  +  DD F   ++      
Sbjct: 189 QPYVAGILNIGTAHLGEFGGRDGICRAKSEIYAHILPDGTAIVPSDDDFTATIRQ---NA 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   I SFG+    D    + +   + +   +     S  V     G H  QN       
Sbjct: 246 GNHPILSFGE--GGDVYATEIQLNPQSAQFNLHTPEGSRTVNLPFAGAHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  ++ L      +GR    +       +  ID++YNANP SM       ++
Sbjct: 304 ALAIGIPLDDIVQGLEQAQGAKGRLNFIQ----HQNYLFIDDTYNANPTSM----RAAAK 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +G ++ V+GD+ E+G+ S   H DL   L    + H+ + G    A +     + 
Sbjct: 356 VLLQQQGLKVMVMGDIGELGDSSWQEHHDLGRDLIELPLDHLVVVGEFAEAAQQGSGCAE 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
           ++H   T      F+ + +          + K S       L+  L+E+
Sbjct: 416 NLHAFATQADALPFLINLVQTHQPQSMSFLFKGSRYTHMETLMADLMEK 464


>gi|297539596|ref|YP_003675365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
 gi|297258943|gb|ADI30788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylotenera sp. 301]
          Length = 464

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 211/468 (45%), Gaps = 24/468 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +   AIQ   +G         +  DSRS+   + F A+KG ++DGH F   A+ +
Sbjct: 1   MMLLSEAANAIQATLLG--ADVTFTSVGTDSRSVTKGQLFVALKGDNFDGHSFAAQAIAQ 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+++   +        P   VDD   +L +LA   R +    + A+TGS GKTT K
Sbjct: 59  GAAAVLISDRTLNVQ-----PAILVDDTCQSLGELAAYWRSKFDIPLAAVTGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L +           +G+ NNHIG+PLTL ++     + + E+GM+H GEI +L+
Sbjct: 114 EMLASILRAACDQPDAVLATVGNLNNHIGLPLTLLKLNARHRYAVAEMGMNHTGEISYLS 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P +A+I     AH+      E IA AK EIFEGL    T  +N DD F  L     
Sbjct: 174 RIGKPTVALINNAGNAHIGELGSFEAIARAKGEIFEGLAADATAVINADDVFAPLWLD-- 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G + I +FG    AD   + ++  +  S +E+     +++V     G H   N L  
Sbjct: 232 -LAGQRKIMTFGLKNKADVTAQ-YQLHASASDIEITTPQGAVKVSLPTPGLHNVMNALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 + A +      L  +   +GR    +         +ID++YNANP SMK AI V
Sbjct: 290 TSTALAMGASLQAVSIGLENYAGVKGR---LQQKAGLNGALVIDDTYNANPMSMKVAIDV 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +S    G +I VLGDM E+G+ +   H ++        +  +++ G           
Sbjct: 347 LMAMS----GEKILVLGDMGELGDNAAEMHAEIGSYAKASGLKSLFVLGDMSAETAKTFG 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +  T   L   ++  +  G  V+VK S      R++N ++ +
Sbjct: 403 AG--AKHYTTPQDLVTDLRKQMQQGTNVLVKGSRFMAMERVVNEIVTK 448


>gi|289209365|ref|YP_003461431.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
 gi|288944996|gb|ADC72695.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thioalkalivibrio sp. K90mix]
          Length = 457

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 133/466 (28%), Positives = 208/466 (44%), Gaps = 25/466 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +L  A++G       +    G+  D+R       F A++GP +D H+ +  A
Sbjct: 1   MIRM-TGQELADAVRGRLENGDGERVFEGVFTDTRQPLEGGLFVALRGPRFDAHEHV--A 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A +++V       +  +  P   V D   AL +LA   R RS+A +IA+TGS GKT
Sbjct: 58  ADLPAAVLLVER-----VLDVPHPQVVVADTGEALGRLAQHWRRRSRARVIALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L  +   +A  G+ NN IGVPLTL  MP D D+ + E+G +H GEI  +  
Sbjct: 113 TTKEMLRCILEGVGSVHATQGNLNNEIGVPLTLLAMPEDTDYAVIEMGANHAGEIGRMAR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
              P +A+IT    AHL  F  +E +A AKAEIF G   + GT  +N DD F +   + +
Sbjct: 173 WTEPMVAMITNAGRAHLEGFGSLEGVAHAKAEIFSGLPSQGGTAVINLDDPFADYWLSLN 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +     G  +         +         + + G   ++     G H+A N +  
Sbjct: 233 EHHHCQRFSLEGGGEIEGVWQAPDRL-------RLTILGAGRDLRLASPGRHVAANAIAA 285

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + +   +D     L+ + P +GR +            L D++YNANP S++A + V
Sbjct: 286 AAAANAVGVAIDAIANGLAGWTPVQGRLQELWHVSG---ARLWDDTYNANPDSLRAGLEV 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ +     GRRI VLG M E+G  +   H +   +     + +    G       +A  
Sbjct: 343 LAAMP----GRRILVLGAMGELGAETPVLHRETGALARAMGVDYCLALGEAARDSAEAFG 398

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 +    D L   +++ L D   V++K S S    R+I  L 
Sbjct: 399 EG--GEWFADHDALRTRLEALLEDETTVLIKGSRSQHMERIIEGLE 442


>gi|312867216|ref|ZP_07727426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
 gi|311097345|gb|EFQ55579.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis F0405]
          Length = 456

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 199/476 (41%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   ++    I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 1   MN--LTLHEVAHLVRAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 58  AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L  K 
Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVNAYLPEKQ 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +              D ++   +    +  +  +       +     G + A N ++ 
Sbjct: 232 KVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 281

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +         R +  +         ++ + YNANP +M+  +  
Sbjct: 282 AYVALQEGVSEAAIRDSFETLQLTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398

Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454


>gi|269101756|ref|ZP_06154453.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161654|gb|EEZ40150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 460

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 134/480 (27%), Positives = 213/480 (44%), Gaps = 37/480 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   L QA++G  IG      ++ +S D+R+IA Q  F A+KG  +D HDF   A
Sbjct: 1   MISV-SLASLAQAVEGQLIG--SDTTISEVSTDTRNIAAQTLFVALKGERFDAHDFCQTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGS 116
              GA  ++V+  +      + +P   V D   AL  L    +     +     +A+TGS
Sbjct: 58  KDNGAVALLVSRHL-----PVELPQILVKDTRIALGLLGAWLKAQLTQQCGLQTLALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM    L++  K  A  G++NN IG PLTL R+  +  + + ELG +HLGEI 
Sbjct: 113 CGKTTVKEMCAAILATKGKVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHLGEIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T+LV+P +A+I  +A AHL  F  ++ +A AK EIFEGL K  T  +N   +  EL  
Sbjct: 173 YTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLAKGATAVINLASNDRELWA 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                L  K + +F   + ADF     +  S+          +    +   +      N+
Sbjct: 233 ---PLLADKNVITFSSEEQADFFASDIELDSDGYPHFELHSPQGSVAI--HLSQLGLHNV 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L   ++ +    T  +             R   +       +ID++YNA+ AS+KAA
Sbjct: 288 SNALAAAALTSVLGATLAEIKQGLETATNVKGRVAVSQPMVGLRVIDDTYNASVASVKAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +L+      +G+R  +LGDM E+GE S++ H ++        +  V   G     + +
Sbjct: 348 IDLLASY----QGQRWFILGDMAELGEESENLHREVGLYAQTKGLDKVMTFGKASAVVSE 403

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----------VVVVKSSNSCGFYRLINLLLE 466
                 H  +      L   +   L   D           V+VK + S     ++  L E
Sbjct: 404 L----NHGQHFADKQPLIAMVNELL--NDQINQQNPLEVTVLVKGARSSRMEEVVTALQE 457


>gi|197335886|ref|YP_002157001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
 gi|197317376|gb|ACH66823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           fischeri MJ11]
          Length = 449

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 133/465 (28%), Positives = 211/465 (45%), Gaps = 25/465 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +A  G  +G      ++ +S DSR I  Q  F A+ G  +D HDFI    ++GA 
Sbjct: 3   LSEIAKACDGRLVG--ADCQISSVSTDSRHIDEQGLFVALIGERFDAHDFIPAVQEQGAT 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V+ ++       ++P   V D   AL  +A            A+TGS GKTT KEML
Sbjct: 61  ALLVSKEV-----DTTLPQVIVSDTQKALGLIAKHVHQVCHTFTFALTGSCGKTTVKEML 115

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+   +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T L +P++
Sbjct: 116 ASILTRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFAVIELGANHQNEISYTTQLAQPNV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  IA AHL  F  IE +A AK EIFEGL++ G    N D +      +     G + 
Sbjct: 176 ALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENGIAIYNLDSNGLPKWSSLF--EGKQV 233

Query: 247 IYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +        ADF     +     +   ++     S++V    IG H   N +    +   
Sbjct: 234 VSFAMNDSCADFYASNIEVNAIGEPSFQLNTPKGSIQVSLGIIGKHNVANAVAAAALAIQ 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             + ++   + L      +GR      A       +ID++YNA+  +MKAA+ +L     
Sbjct: 294 ANSSLNDIQQGLQELGSVKGRVAVETLASGLK---VIDDTYNASVPAMKAAVELLGGFK- 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G+R  VLG+M E+GE S + H ++ E  + Y    V   G     + +      +  
Sbjct: 350 ---GQRWLVLGNMAELGEESLALHREVGEYAAPYQFEQVVTFGDDTKVISEL----CNGR 402

Query: 426 YSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
           + ET   L  ++   L     +   V+VK +NS     +++ L E
Sbjct: 403 HFETRSDLNAYLLKELQLIKHNEVTVLVKGANSSRMSEVVSALKE 447


>gi|149190164|ref|ZP_01868440.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
 gi|148836053|gb|EDL53014.1| UDP-N-acetylmuramyl pentapeptide synthase [Vibrio shilonii AK1]
          Length = 454

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 132/473 (27%), Positives = 213/473 (45%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  D+   ++G   G   +  +  ++ D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MIAL-TLSDIANIVEGTQSGG--EVQIQEVTTDTRAIQSGALFIALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  ++V   +      + IP   V D   AL  L      R     +AITGS GKT
Sbjct: 58  ADKGAAALIVERQL-----DIDIPQVIVADSKVALGLLGAEVHRRCGTKTLAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS + +     G++NN IGVPLTL R     DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSGLGQVLYTAGNFNNDIGVPLTLLRSTPQDDFSVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  ++ + +AK EI++GL   GT  +N D     +      
Sbjct: 173 LVKPDIAMVNNVAEAHLEGFGSLDGVKTAKGEIYQGLTANGTALINLDSQGESIWSEVLQ 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMT 299
              + T     ++ NADF        SE   +        ++E+    +G H   N +  
Sbjct: 233 DKNLIT--FSKQNTNADFYGSDIAMSSEGYPLFTLHTPIGNVELQLSLLGEHNVANAVAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +     A ++     L      + R    +        TLID+SYNA   S+ A  + 
Sbjct: 291 SALAIQCGATLEQIKIGLQSLSKVKRRVDVEKLT---EHITLIDDSYNA---SVPAMKAA 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +  ++   +G+R  +LG+M E+G  S + H ++ +  + +   HV   G     + D   
Sbjct: 345 VDLLAQFKQGQRWLILGNMAELGHESLALHKEVGQHAAPFAFEHVLTYGEDAKVISDL-- 402

Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
                 + ++ D +  +I+ +L         ++VK + S G Y + N L E +
Sbjct: 403 --CGGMHFQSHDSMLEYIERNLIQLNQTSHTLLVKGALSAGMYTIANALKETY 453


>gi|332362740|gb|EGJ40536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK49]
          Length = 456

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 199/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENIALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +V            VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVVEG------AYILVDDVLTAFQRLAQYYLKKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +          +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQSIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++ VL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLVVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVQYFVKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|239940574|ref|ZP_04692511.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987058|ref|ZP_04707722.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444009|ref|ZP_06583399.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
 gi|291346956|gb|EFE73860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces roseosporus
           NRRL 15998]
          Length = 473

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 133/476 (27%), Positives = 204/476 (42%), Gaps = 23/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G    I  P   V G + IDSR +AP   F A  G   DGHD+  
Sbjct: 1   MITL-SLAEIAEIVGGQPHDIPDPAVTVTGPVVIDSREVAPGSLFAAFAGERVDGHDYAQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   VDDV+GAL  LA AA  R   +++A+TGS G
Sbjct: 60  -------RAVEAGAAAVLAARPVGVPAIVVDDVVGALGALARAAVERLGTSVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+PLT      + +  + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLQRHGPTVWTPGSFNNEIGLPLTALSATAETEHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AHL  F   E IA AK E+ EGL + G   LN DD     + ++
Sbjct: 173 TELTPPRIGLVLNVGSAHLGEFGSREAIAQAKGEMVEGLPEDGCAVLNADDPLVRAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +     FG++  AD +  K +   +   +           V   +          
Sbjct: 233 TKARVLL----FGEAPEADVRGEKVRMTPDGRPVFELHTPTGCSDVTMRLY-GEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 288 LAAAAVAHELGMSVTEIAEALSEAGTLSRWRMEVTERGDGVTVVNDAYNANPESMRAALR 347

Query: 359 VLS---QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L+   Q      GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALAAMGQARGADGGRTWAVLGQMAELGDASLAEHDAVGRLAVRLNVSKLVAVGGREASWL 407

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LLE
Sbjct: 408 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEKVAQALLE 463


>gi|238026128|ref|YP_002910359.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
 gi|237875322|gb|ACR27655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia glumae BGR1]
          Length = 468

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 122/473 (25%), Positives = 199/473 (42%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T HD    I G ++          +S DSR++   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLHDAAALIPGATVIGDGSVAFARVSTDSRTVGEGDLFVALKGERFDAHDFLAEV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+   V       +P     D   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  AARGASAALVSRAGVLP----GLPQLKAADTRVALGALAHGWRQRFDLPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        +  G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASVFAAAVGQDARLSTAGNFNNDIGLPLTLLRLAPAHRLAVIELGMNHPGETGT 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P IA++      H    + +E +A   A +   L   G      DD +  + + 
Sbjct: 176 LARIAAPTIALVNNAQREHQEFMATVEAVALEHASVIHALGPDGVAVFPADDRYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  + +           ++   + +      +EV    +G H A+N L
Sbjct: 235 --VAATGNRIVDFALNDDGRATAAAVTGTTQGGVLAIDTPAGRIEVRLRALGAHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                      + D     L  F P +GR +  R    +     LID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVEPDAIRAGLEAFEPVKGRLQVKRASLASLAGAMLIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+Q +      R+ V+G+M E+G+   +FH ++        I  ++ +G        
Sbjct: 353 IDVLAQCAA----PRVLVIGEMGEVGDAGPAFHREIGAYARERGIDALYATGEATREACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   +  +   G    V+VK S      R+++ L  +
Sbjct: 409 AYGAAAR--HFDEVGALVAAL-DAAGYGAAATVLVKGSRYTRMERVVDALTNQ 458


>gi|311693451|gb|ADP96324.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine
           bacterium HP15]
          Length = 462

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 146/473 (30%), Positives = 226/473 (47%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   ++  +    +    + G +      G+S D+R++ P + F A++G ++DGH F+  
Sbjct: 1   MMRAFSLAEAKGWLGAQCASGDLASVSFAGVSTDTRTLEPGQLFVALRGENFDGHRFLQQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ KGA  +VV+T       +L++P   V++ L AL +LA A R  S A I+AITGS GK
Sbjct: 61  AMDKGAVGLVVDTPDT----NLALPQLVVNETLEALARLAAANREESTAAILAITGSSGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM    LS + KT +  G+ NNHIGVPLTL  +  +  +G+ ELG S LGEI    
Sbjct: 117 TTVKEMCAAILSQMGKTLSTKGNLNNHIGVPLTLFGLSPEHQYGVIELGASGLGEIAHTV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +P +A++T    AHL  F   E I  AK EI +G+   G + LN DD  F   ++++
Sbjct: 177 ALAKPRVAILTNAGEAHLEGFGSYENIVLAKGEIIDGVASDGLMVLNGDDPAFAQWRSRA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +  +   G   +    +   +    +++      G    V     G H   NML+ 
Sbjct: 237 GARRVAGVSRLGAEADY-HAVIDGQDAGTRTFQVSGPDGWLCRVTLGLEGDHNITNMLLA 295

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L A     +  L+   P +GR +    +      TLID+SYNANP+SMKAA+ V
Sbjct: 296 IAATRELGASDQAIVAGLASVAPVKGRLQVLELSPE---MTLIDDSYNANPSSMKAALGV 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       G++IAVLG M E+G  + + H ++      + I  +   G       D   
Sbjct: 353 LA----GRAGQKIAVLGAMAELGAKANALHREVGVCAREHGIDRLITVGPGCEGYADGFG 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLEE 467
            S  +    + +            GD      V+VK S S    R++  + E+
Sbjct: 409 ESTELGL--SHEQAVESAI-----GDKNTPLTVLVKGSRSSAMERVVEGIKEK 454


>gi|323491033|ref|ZP_08096225.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
 gi|323314697|gb|EGA67769.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase [Vibrio
           brasiliensis LMG 20546]
          Length = 452

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 211/471 (44%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     +  A+    +G      +  +S D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MITMM-LSQIADALDAELVGN--DRAIESVSTDTRAIDAGALFVALVGERFDAHDFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GAG ++V+      I    +P   V D   AL +L        +   +AITGS GKT
Sbjct: 58  VESGAGALLVSR-----IVESDVPQLLVKDTKLALGQLGALVHQSCQTPTVAITGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   +    +     G++NN IGVPLTL R   + D+ + E+G +H+GEI + T+
Sbjct: 113 TVKEMVASIMEQKGRVLFTAGNFNNDIGVPLTLLRSTPEDDYAVIEMGANHIGEIAYTTN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+  +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  E   +   
Sbjct: 173 LVKADVALVNNVAAAHLEGFGSLDGVKQAKGEIYQGLKPGSVAIINLDSNGGEYWHS-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +   +S   S    F        S ++   +      + +    +G H   N L   
Sbjct: 232 ADKLVKRFSVMDSDADFFAKDISLNSSGEAEFTLVSPVGDVAIKLGIVGQHNVANALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A+++     L+     +GR              LID+SYNA+  +MKAA  +L
Sbjct: 292 ALALELGANLEMVQSGLAQLSKVKGR---VEVIELNDTIKLIDDSYNASVPAMKAAADLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  +    G R  +LG+M E+G+ S + H  + E  + +   HV   G    A+ D    
Sbjct: 349 ASFT----GIRWLILGNMAELGDESLALHRQVGEHAAPFKFEHVLTYGADAKAISD---- 400

Query: 421 SIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLEEF 468
                +  +   +  +I+  L    +   ++VK +NS G  ++   + E +
Sbjct: 401 ECGGIHFSSHQSMIDYIKQHLAQHQEQQTLLVKGANSAGMSKVATAVKEMY 451


>gi|322384124|ref|ZP_08057842.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151204|gb|EFX44513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate-D-alanyl-D-alanine ligase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 455

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 125/461 (27%), Positives = 208/461 (45%), Gaps = 34/461 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV---------QKGAGLVVVNT 72
                + G+SID+RS+ P   F  + G H DGH+ +  A+         ++G        
Sbjct: 13  ADAISIQGVSIDTRSLRPGNLFVPLPGNHIDGHEHVAAALSKEAAAAFWKRG-------- 64

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                       +  VDD L AL +L+   R +  A II ITGS GKTTTK+++   L +
Sbjct: 65  ---YPNPPEDAVLIFVDDPLKALQRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGT 121

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             + +   G+ NNHIG+PLTL ++  D +  + E+GMS  GEI  L+ L +P +A+IT I
Sbjct: 122 TYRVHKTQGNLNNHIGLPLTLLQIGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMI 181

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AHL      EEIA AK EI  GL+  G    N D+   + +  +          SFG+
Sbjct: 182 GDAHLLQLGSREEIARAKTEILGGLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQ 241

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               +      +  ++ S   +Q       +     G H   N L  +     L    + 
Sbjct: 242 KSTNNIYPVDIQIGNDGSSFRLQDSDTEFYIPLL--GLHNVMNALAAVTAGRELEVSDEK 299

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L      +  G R      +  FT+++++YNA+PA+ KA +S++ Q+   G   + 
Sbjct: 300 IAQGLRD---VQLSGMRIEKRKAESGFTVLNDAYNASPAATKAVLSLMKQL--KGYRHKY 354

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYN----ISHVWLSGFHVLALKDALPRS---IHVH 425
            VL DM E+GEL + FH ++  + +       +S ++  G     + +        ++ +
Sbjct: 355 VVLADMLELGELEEQFHREIGGIAANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTY 414

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + E    +   ++  +   DVV+VK+S       ++N LL 
Sbjct: 415 WFEDKQAMANALKEVIHPEDVVLVKASRGMKLEDVVNFLLA 455


>gi|167614202|gb|ABZ89705.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Buchnera
           aphidicola]
          Length = 453

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 212/469 (45%), Gaps = 17/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   +     G   G      ++ I I+++ I P   F A+ G ++D H FI  A
Sbjct: 1   MISL-SLKTIASITNGQLYGK--DLLIDEIVINTKKIIPGCLFIALIGKNFDAHIFIQDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KG   ++ +  +        I    V +   AL ++A   R ++ A I+AITGS GKT
Sbjct: 58  IKKGCSAIITHKHI-----KSHISYIIVQNTSFALGQIANWIRNQTNAKILAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L     T + IG+ NN+IGVP+TL ++     + + ELG +  GEI ++++
Sbjct: 113 TVKEMTASILRKYGNTISTIGNLNNNIGVPITLLQLNKYHKYAVIELGANQPGEISYISN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +I  I  +HL  F  +  ++ AK+EIF GL+  G + +N D   F     K+ 
Sbjct: 173 MTQPEIILINNIQYSHLQGFKSLLGVSQAKSEIFSGLKPNGKVIINLDSHHFSKW-KKNI 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  K +N++F        S  +   +     ++ +    +GY    N L   
Sbjct: 232 KNNHVIYFSIKKKQNSNFFSSNITIDSYGTTFVMHTPNGTINISLPFLGYQNISNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   ++     L+       R    +  +      LID++YN+N ASM  AI VL
Sbjct: 292 ALAFALKIPLNIIQIGLADTPIISRR---LQSIILNPDKILIDDTYNSNVASMITAIKVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     G +I V+GDM E+GE S  +H  +    +L +I+ ++  G     + D    
Sbjct: 349 EKMP----GYKILVIGDMSELGENSFLYHRMIGNAANLSDINKIFSIGNISNEITDIFHN 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             H  + + ++               +++K S +     ++  L++E+ 
Sbjct: 405 GKHFLHKKDLNKYLKKYFLKKTK-ITILIKGSRNTKMDEVVENLIQEYK 452


>gi|227500314|ref|ZP_03930381.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
 gi|227217600|gb|EEI82912.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus tetradius ATCC 35098]
          Length = 460

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 198/466 (42%), Gaps = 18/466 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  ++ + ++            + G+S DSR+I     +  + G  +DG  FI     K 
Sbjct: 5   SLGEISRMLKAELCDKAYDSHMIKGVSTDSRTIQEGNLYIPLVGEVFDGRLFIKECEDKK 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
           A   +++ D      ++SIP   VDD L AL  LA A R   S   II ITGS GKTTTK
Sbjct: 65  AAAFLIDKDYKIK-NNISIPYIRVDDTLKALQALAKAYRNELSSTKIIGITGSNGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L   L         IG+ NN IGVP T+  +  D +  I E+G    G+I   T +V+
Sbjct: 124 DLLYEVLKKKFNVQKTIGNLNNEIGVPKTILSLREDCEVAIVEMGTDSFGDISLTTSIVK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +HL      E I  AK EI EGL   G    N DD   +  K  S    
Sbjct: 184 PDIALITNIGDSHLEKLKTKEGILKAKMEIVEGLNPEGYFIYNGDDPTIK--KDISLYTI 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   SFG++ + DF ++   +   +           + ++     Y+         G  
Sbjct: 242 KQKKISFGENDDNDFVVKDVGEKLAKVSFSHDGDVYEIPLLGSHNVYNG--------GAC 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++++ +  + + +     +          +    F ++D+ Y +NP S+++ ++    +
Sbjct: 294 LLISSLLGLSKEQIKEGLLEVTPANNRSRIIEFDGFDVLDDCYKSNPQSLRSGLNTTKML 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +     I VLGDM E+GE  +  H  + + +   ++ +    G     +      +  
Sbjct: 354 GGYDNK--ILVLGDMLELGESEKDLHYQVGKEIDPKDVHYCLFFGELSYYMYQGALENFP 411

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + +  + + L   ++S +    ++ VK S+      +I  + +
Sbjct: 412 KNRLFHFTSKNDLIDKLKSLITRSSLLFVKGSHGMHMEEIIESISK 457


>gi|325690162|gb|EGD32166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK115]
          Length = 456

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSEHPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +        +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIASYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|296876857|ref|ZP_06900905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432359|gb|EFH18158.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 456

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 126/476 (26%), Positives = 198/476 (41%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T H++   +     I       +     DSR I P + F  +KG   DGHDFI  
Sbjct: 1   MN--LTLHEVAHLVHAKNDISQFEDVALVKPEFDSRLIGPGDLFVPLKGAR-DGHDFIET 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA        +         P   V+DVL A   LA A   ++K  + A+TGS GK
Sbjct: 58  AFENGAVATFSEKVVE------GHPYILVEDVLSAFQTLAAAYLQKTKVDVFAVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   LS+   TY   G+YNN IG+P T+  MP   D  + E+G  HLG+I  L+
Sbjct: 112 TTTKDMLAQLLSTTYLTYKTQGNYNNEIGLPYTVLHMPEGTDKLVLEMGQDHLGDIHLLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L  P  A++T I  AHL  F    EIA  K +I +G+ + G + +  D      L    
Sbjct: 172 ELAHPKAAIVTLIGEAHLEFFKDRSEIAKGKLQIADGMPEGGLLVVPADPIVDAYLPENQ 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +              D ++   +    +  +  +       +     G + A N ++ 
Sbjct: 232 TVVR----------FGPDEEIFITELIERKDSLTFRANFLEEAIDLPVTGKYNATNAMIA 281

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +             +         R +  + +       ++ + YNANP +M+  +  
Sbjct: 282 AYVALKEGVSEAAIRDSFETLQLTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     
Sbjct: 339 FSTIPANPNGRKLAVLADMKELGEQSVDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLAS 398

Query: 420 RS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +     HV+Y       +  + +   ++ SL + D +++K SNS    +L+  L  
Sbjct: 399 QMFPLGHVYYFKKTAEEDQFEDMVKQVKESLKEQDQILIKGSNSMNLGKLVEELEN 454


>gi|325697105|gb|EGD38992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK160]
          Length = 456

 Score =  235 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +         ++     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQKIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSDADIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|327473366|gb|EGF18786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK408]
          Length = 456

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P   F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVPLRNAEFDSRLIEPGGLFVPLKGAR-DGHDFIATAFTQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +         ++     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFDCNFLEQKIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEADIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|85703613|ref|ZP_01034717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
 gi|85672541|gb|EAQ27398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseovarius sp. 217]
          Length = 476

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 172/475 (36%), Positives = 243/475 (51%), Gaps = 18/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  +   A  G   G      V+G+SID+R++   + F A++    DGH+F+  A
Sbjct: 1   MS-LWSAQEAAAATGGRVTG---DWQVSGVSIDTRTLQRGDLFVALRAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+   V        P+  V+DV   L  L  A R RS+A ++A+TGSVGKT
Sbjct: 56  LAKGAAAALVSH--VPEGVGGDAPLLIVEDVQAGLEALGRAGRARSRAKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L    +T+A   SYNNH GVPLTLARMPVD  F + E+GM+H GEI  L  
Sbjct: 114 STKEMLRDVLRHQGRTHAAEASYNNHWGVPLTLARMPVDTQFAVIEIGMNHPGEIAPLAR 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+AVITT+A AHL  F  IE IA  KA IFEGLE  G   +N D +   +L+A++ 
Sbjct: 174 MARPHVAVITTVAAAHLEAFEDIEGIAREKASIFEGLEPGGVAVINADIATAPILRAEAV 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I SFG ++ A  +L   +     +    +     +       G H A N L  L
Sbjct: 234 -RHAARILSFGTARGAHHRLLNVELHDRVTVGHARAWRSPLVYKVGVPGRHFAMNALAVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLIDESYNANPASMKAA 356
            +V +L  D   A+  L+ + P  GRG R         +     LID+++NANP SM AA
Sbjct: 293 AVVQVLGCDRAVAMADLAGWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAA 352

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRRIA+LGDM E+G    + H  LA++  +  I  +   G  
Sbjct: 353 LEVLAAAQPRDGVGRVARGRRIAILGDMLELGADEVAMHAGLADLPYMAQIDEIHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + AL + L       ++ T + L       +  GDVV+VK S       ++  L 
Sbjct: 413 MRALWEVLSEGRQGRWAATAEDLAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467


>gi|88858798|ref|ZP_01133439.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
 gi|88819024|gb|EAR28838.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas tunicata D2]
          Length = 463

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 204/469 (43%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+   + +   +     G   Q     I+ D+R+I   E F AIKGP++DGH F+  A
Sbjct: 1   MIPM-DLNWIASVLAVSFEGQNQQVL--NINTDTRTIKAGEVFLAIKGPNFDGHKFVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V+  +      + +P F V D   AL KL  A         IAITGSVGKT
Sbjct: 58  VAQGAVAVIVDHSV-----KVQVPQFIVPDARLALGKLGAAVMAEVNPKTIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    LS   +  A  G++NN IGVPLTL R+     + + ELG +H+GEI + T 
Sbjct: 113 TVKEMCAAILSQHGEVLATKGNFNNDIGVPLTLLRLEPKHQYAVIELGANHIGEIAYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +AV+  +A AH+  F  ++ +A AK EIF GL+  G   +N D  + +       
Sbjct: 173 LVKPDVAVVCNVAAAHIEGFGSLDGVAQAKGEIFSGLKAGGIAVINADSPYVDYWLTSLD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +       +       +   K       +    +  ++++   G       N+   L
Sbjct: 233 KSTLCQFSMSQQLDVWPENIHLDKLGRAGFDLCTPTERIAVQLPIAGKH-----NITNAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++      T                R          T+ID++YNAN  S+KA I +L
Sbjct: 288 IACALTLPLGVTLAHVAQGLASMPMVQGRVNLIEVNDSLTVIDDTYNANVQSVKAGIDLL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            QI    EG +I   GDM E+G  ++ +H ++        I   +  G       D   +
Sbjct: 348 GQI----EGHQIFAFGDMGELGADARQYHEEVGLYAQQKGIDTFYSLGVLSRYASDVYQK 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV--DG-DVVVVKSSNSCGFYRLINLLLE 466
           +    +  +   L   I + +   +G   ++VK S S     L+  ++ 
Sbjct: 404 A--GLHFSSRQQLLAAILNDIAHVEGPITILVKGSRSSRMELLVQDIVA 450


>gi|150391439|ref|YP_001321488.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951301|gb|ABR49829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Alkaliphilus metalliredigens QYMF]
          Length = 457

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 111/463 (23%), Positives = 206/463 (44%), Gaps = 15/463 (3%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + ++G          ++NG+SID+R+I   + +  I G  ++GH+FI  A+  GA
Sbjct: 6   LNEIQEMVKGSGLKKSHEDIWINGVSIDTRTIKDTQLYIPIIGEKFNGHEFIEKAMGNGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + + +    I ++  P   V+D L A+  LA A R +    II ITGS GKT+TK++
Sbjct: 66  TATLWDKNQ--PIPNIDFPFILVEDTLDAIQTLAKAYRNQLNVKIIGITGSNGKTSTKDI 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L ++ KT+  +G+ NNH+GVPLTL  M  + +  + E+GMS LGEI  L+ +    
Sbjct: 124 LFNILQTVYKTHKTLGNLNNHLGVPLTLLEMAENTEIAVIEMGMSGLGEIELLSKIASSD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+IT     H+++   +E I  AK EI EGL+  G      D     +   K      +
Sbjct: 184 VAIITNSTNVHINDLGSVENILKAKLEIIEGLKPHGLFIYFGDSPPLRVGVEKLDLK--Q 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG +++ D+ ++     +E  + E+         +     + +             
Sbjct: 242 KKVTFGINRDNDYTVKLISSENEGIYFELVGSDSPRLFLSMLGNHQIYNAAAA-----IA 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  ++ +     K          +    F ++++SY +NP S+++ +  +     
Sbjct: 297 VAQYFNITLEKIQEGMLKIEATGMRNELIKCNGFDILNDSYKSNPISLRSVLDTMYSFKK 356

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
           + +   I VLGDM   GE   + HID+ E +    I +V+  G                 
Sbjct: 357 YKQK--IVVLGDMFGTGENEITTHIDIGEEIDPSQIDYVFTIGELGKYFAQGAKTRFPDE 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V        L   ++  +    +V++K S      ++++ L 
Sbjct: 415 RVFSFMDKSSLTTKLKEMIKKDAIVLIKGSRILELEKVVDELK 457


>gi|134280041|ref|ZP_01766752.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
 gi|134248048|gb|EBA48131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 305]
          Length = 468

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVVRAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|126451793|ref|YP_001067790.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|226199585|ref|ZP_03795141.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|126225435|gb|ABN88975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106a]
 gi|225928331|gb|EEH24362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 468

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|254191016|ref|ZP_04897522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157938690|gb|EDO94360.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 468

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLVIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|110598575|ref|ZP_01386843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339809|gb|EAT58316.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 471

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/472 (26%), Positives = 201/472 (42%), Gaps = 13/472 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + +  D  + I        P   +    + IDSR +   E F A+KG   DGH ++ 
Sbjct: 1   MKGVLSVEDF-RGIGDVVTHGSPLLTITAPVVVIDSREVKGGELFVALKGERTDGHCYVS 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +  Q+GA  V+V+ +     GS   P        DD +  L +LA   R      ++AI 
Sbjct: 60  NVFQQGASWVMVSREWYEKEGSPQPPEGKGFIVTDDPVSGLQQLASCYRKTFSIPVVAIG 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEM+   L++        G+ NNH+GVPLTL ++  D    + E+G++H GE
Sbjct: 120 GSNGKTTTKEMVASVLATGFTVQMSQGNRNNHLGVPLTLLQLRPDTGIAVVEVGINHPGE 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  LT + RP   ++T I   HL     ++ +A+A+ ++F  L+++G       D     
Sbjct: 180 MEELTAIARPTHGLLTNIGHEHLEFLIDLDGVAAAETQLFTYLQESGGTAFVNGDD--SR 237

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+A   AL    IY          + R    C +     V       E V          
Sbjct: 238 LRAAGEALEGPVIYGTADLPGRICRARDISVCRDGRISFVLCSADRTEPVTLNFTGKHNV 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
              +    V +      + I+   +       G +    ++ G   +++++YNAN  SM+
Sbjct: 298 INAVAAAAVGLHFGLPLSRIR-EGLESLVPAPGWKRLEVMDSGGLRILNDTYNANSDSMR 356

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            AI  L  +    EG+RIAVLGDM E+G      H  +   +    +  +++ G     +
Sbjct: 357 LAIDALCDLP--CEGKRIAVLGDMLELGAAGDVEHESIGRYIHGSRVDLLYVYGEKARLI 414

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               P S   H   T + L   +   + DGD ++ K S      R++  L+ 
Sbjct: 415 CRESPGSCQGH-FSTHEELLEALLEGVHDGDAILFKGSRGMKLERVVESLIN 465


>gi|158522801|ref|YP_001530671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
 gi|158511627|gb|ABW68594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfococcus oleovorans Hxd3]
          Length = 472

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 206/466 (44%), Gaps = 18/466 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            D++ A  G  +          ISIDSR++   + F AI+G  +DGHDFI   + +GAG 
Sbjct: 2   SDVIAATGGELVQGKGNEMFENISIDSRTLGKGDLFVAIQGQQHDGHDFIDRVLAQGAGG 61

Query: 68  VVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+++    + I +           V D + AL  LA   R      + AITG+ GKT+TK
Sbjct: 62  VMIDQAHASRINTPRATGRGARVVVKDTVVALGDLARHRRRSVNPRVAAITGTNGKTSTK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM  +      +  A  G++NN IG+PLTL R+       I E+GM+  GEI  L  +  
Sbjct: 122 EMAAMVCGRRYRVLATTGNFNNEIGLPLTLLRLEKGHQVAILEMGMNAPGEIGRLAKICE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+  +   HL     I+ +A AKAE+ E L    T  +N DD     +  K     
Sbjct: 182 PDMGVVLNVGAGHLEGVENIDGVARAKAELLEALTDKDTAIVNADDMRVMKMAQKVRG-- 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++G  + AD      ++   +   ++ L    + + V     G  M  N L    
Sbjct: 240 --RVVTYGMRQKADITAASVRRQDGRVCFDLCLSATDEQVAVALPASGTFMVSNALAAAA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I + L          L  F P  GR    +       FTL+D++YNANP SMKAA++ L 
Sbjct: 298 IGAGLGLSAPEIKAGLENFSPVPGRMTITQTRAG---FTLVDDTYNANPESMKAALAGLR 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++   G G  I ++GDM E+G+ +   H     + +   +  ++++G    A+      +
Sbjct: 355 ELKGAGRG--ILIMGDMFELGDHAPVMHGKTGVMAAESGVDRLYVTGEFAEAVAGGAAAA 412

Query: 422 I---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    E+ + +   +   L  GD V+VK S       ++  L
Sbjct: 413 GMTPEKIMIESKETIIEAVCPVLEPGDWVLVKGSRGMRMETVVQAL 458


>gi|307256035|ref|ZP_07537823.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
 gi|306865457|gb|EFM97352.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
          Length = 464

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/475 (27%), Positives = 203/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T +++   +    IG      V   S D+R       FFA+KG ++D H ++ +A
Sbjct: 1   MIKLTT-NEIAGILNAQLIG-DGNVLVETTSTDTRQAVENGLFFALKGENFDAHHYLANA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++G+  VVV  +       +S+P   V D   AL +LA   + +     +A+TGS GKT
Sbjct: 59  VEQGSVAVVVEREC-----EISVPQIVVKDTRLALGELAKWLKAKLNPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +           G+ NN +GVP+TL R+     F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKMTACEDEVLYTFGNLNNDLGVPMTLLRLTPQHKFAVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +E +A AK EI+ GL+  G   +N    + +  K
Sbjct: 174 YTTEITQPDACLVNNVAAAHLEGFGSLEGVAQAKGEIYRGLKAGGKAIVNQAFYYPQWQK 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               H L   +     +   ADF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGEHELQSFSYIGSDQDSYADFWAENVELGLAGSRFTLHSPQGEIEINLPYLGAHNISN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR               ID++YNAN  SMK+
Sbjct: 294 ALAATSLSMAVGADLQAVKSGLEQRSQVKGRLYPVEV---NDHCLFIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL          RI  +GDM E+G+ S++ H  +A+ +   N+  V   G     + 
Sbjct: 351 AVSVLKNYPA----FRIFAVGDMAELGDESEACHQQVADFVREANLDLVVSFGKQSAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+     Q       +V++ K S S     LI  L
Sbjct: 407 -----HDTAHHFTDKQAMHDFLLPIISQKIAEKQPLVLLAKGSRSQKMETLIFAL 456


>gi|152996631|ref|YP_001341466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
 gi|150837555|gb|ABR71531.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Marinomonas
           sp. MWYL1]
          Length = 448

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 189/467 (40%), Gaps = 20/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T  D+ +A  G  IG      +N +  D+R I     F A+KG  +DGHD+I  A
Sbjct: 1   MLINLTLSDIAKACDGELIG--EDCSLNAVVTDTRKIVSGCLFVALKGERFDGHDYIGQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           VQ+GA  VV +  +             V D   A   +A   R   K  ++ ITGS GKT
Sbjct: 59  VQEGAVGVVSDRVVDVPN------YVKVFDTTLAYGVIARLIRDAFKGPVVCITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K+ L  +L+          + NN IGVP TL  +  D D  + E G S  GEI  L  
Sbjct: 113 TVKDWLAQSLTDKNVLKTR-ANLNNQIGVPQTLLELDADNDVAVIEAGTSFTGEIPLLAK 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P I V+T    +H     GIE+IA  K  +  G     ++ LN DD +F+       
Sbjct: 172 VAFPDIVVLTNATGSHFEGLGGIEDIAKEKGALISGSSPNASVVLNSDDEYFDYW---CG 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G + +YSFG +++AD      +  +E S       G +  V   G G H    +   +
Sbjct: 229 LAGDRQVYSFGFTESADLYASDIELGAESSLAMFHYDGMAQLVTIAGAGKH---QIANGM 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V  +        +A            R      +    LI++ YNA+P S++AAI VL
Sbjct: 286 AVVLAMLIIGIDFKQAADKLASPVLVSGRLERLKTKNGALLINDCYNASPKSVEAAIDVL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
           S  S         +LG + E+G      H  L        IS +   G        A   
Sbjct: 346 SIQSVEE---TWLILGGLAELGAQRDDIHHSLGIYAKNKGISCLICVGPVASIAGAAFRS 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  +  Y  T +     ++  L     ++VK S S     +I  L+ 
Sbjct: 403 KGGNAIYCNTHNEAATVVRP-LDKKHAILVKGSRSAKMENVIEALIN 448


>gi|254199028|ref|ZP_04905443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
 gi|169656858|gb|EDS88255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei S13]
          Length = 468

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKVGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|229823665|ref|ZP_04449734.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
 gi|229786902|gb|EEP23016.1| hypothetical protein GCWU000282_00966 [Catonella morbi ATCC 51271]
          Length = 467

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 131/447 (29%), Positives = 210/447 (46%), Gaps = 11/447 (2%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             Q  +  +  D+R + P   F  + G   DGH +I  A+  GA   + + D  A   S 
Sbjct: 22  DRQISITSVEFDARKVTPGSLFVPLVGGATDGHSYIQQALDNGAVATLWSAD-PAQAPSD 80

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + V  VDD L AL  LA   R      ++ +TGS GKTTTK+M  + L +  + +   G
Sbjct: 81  DLAVVFVDDTLQALQDLANFYRRDLNPIVVGVTGSNGKTTTKDMTAMVLQAKYRVHKTQG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IG+P TL +MP D    + E+GMS  GEI+ L+ + +P IA IT I  +HL    
Sbjct: 141 NYNNEIGLPYTLLQMPEDTQVAVIEMGMSDFGEIKQLSEIAQPDIAAITLIGESHLEFLG 200

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
               IA AK EI  GL+  G +    ++   E             + SFG + +AD    
Sbjct: 201 SRAGIAQAKLEILYGLKPNGVLLYPANEPLIES--EMPEIDQPIYLRSFGFTDHADAFAY 258

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
              +  ++++ +  L+  ++      +G +   N L+ L +  +L   ++ AI  L+ F 
Sbjct: 259 DMVEEVDRTYFKTNLE-PNVTCTIPVLGAYNVSNALIALSVAELLDVPLEQAIFQLANFQ 317

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R              L++++YNA+P S+ A +  L+ ++     RRIAVLGD+ E+
Sbjct: 318 LTANR---LEWLTTHQGARLLNDAYNASPTSVLAVLKSLAALNLAPGQRRIAVLGDVREL 374

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS----ETMDGLFLFI 437
           GE S   H  LA+ L+  +   V+L G  + +L + L       +          L   +
Sbjct: 375 GEASAQLHRSLAQGLAPESFERVYLFGPEIASLYETLQDRYEASHLFYEPADHSRLIAQL 434

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           Q+ L D D+V+VKSS      +++  L
Sbjct: 435 QADLTDKDLVLVKSSFGTDLLQVVTAL 461


>gi|76810198|ref|YP_334919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254261158|ref|ZP_04952212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
 gi|76579651|gb|ABA49126.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1710b]
 gi|254219847|gb|EET09231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1710a]
          Length = 468

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHTLGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|53720639|ref|YP_109625.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei K96243]
 gi|67643633|ref|ZP_00442378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|121601455|ref|YP_991825.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124385798|ref|YP_001027318.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126439883|ref|YP_001060539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126448083|ref|YP_001082745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998641|ref|ZP_02264499.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
 gi|237813923|ref|YP_002898374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|254178804|ref|ZP_04885458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|254180542|ref|ZP_04887140.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|254202819|ref|ZP_04909182.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|254208161|ref|ZP_04914511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|254357635|ref|ZP_04973909.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|52211053|emb|CAH37041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia pseudomallei K96243]
 gi|121230265|gb|ABM52783.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei SAVP1]
 gi|124293818|gb|ABN03087.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10229]
 gi|126219376|gb|ABN82882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 668]
 gi|126240953|gb|ABO04046.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747066|gb|EDK54143.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei FMH]
 gi|147752055|gb|EDK59122.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei JHU]
 gi|148026699|gb|EDK84784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei 2002721280]
 gi|160694718|gb|EDP84726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 10399]
 gi|184211081|gb|EDU08124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1655]
 gi|237506094|gb|ACQ98412.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia pseudomallei MSHR346]
 gi|238525012|gb|EEP88442.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065320|gb|EES47506.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei PRL-20]
          Length = 468

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|325688256|gb|EGD30275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK72]
          Length = 456

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 203/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYLLVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL + G + +  D    E L          
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRENGLLIVPADKIVNEFL------PTGC 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG     D  +   +    ++ +  +       +     G + A N ++       
Sbjct: 232 DLVRFG----PDADIFLTRLEERKNSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|315186405|gb|EFU20165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 470

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 208/479 (43%), Gaps = 26/479 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P  +   L   +    +    +   +  ++IDSR       F  ++G   DGH ++  A 
Sbjct: 7   PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPV--------FGVDDVLGALNKLAVAARLRSKATI-IA 112
           Q+GA   +V   + +  GS  +            V D L AL  L        +  I I 
Sbjct: 67  QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVPDTLEALQTLGEWYLSSLRVPIRIG 126

Query: 113 ITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           +TGS GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H
Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GE+  L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ F
Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F +L            +           +  ++    +    V L  K + +   G G H
Sbjct: 247 FHVLVE---------GWRGTFLPYGPATVEGFEGWESRGLEGVILLWKGLRIPLQGYGEH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M +N L  + +   L        + L  + P  GRG+             + + YNANP 
Sbjct: 298 MVRNALGVIRLSDHLGVPPSMVAEGLQAYRPLFGRGELKEIGGVW----FLVDCYNANPE 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+A++  +  +        I VLG M E+G+ + S H  L + L+ Y    V L G  +
Sbjct: 354 SMRASLEGVRGLKGVRRR--IVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            A    L     V +  T++     + S + +GD+V++K S + G  R+I      + A
Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRYHA 470


>gi|307731076|ref|YP_003908300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
 gi|307585611|gb|ADN59009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1003]
          Length = 478

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 119/470 (25%), Positives = 194/470 (41%), Gaps = 21/470 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP++T H+    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   NPMFTLHEAAALIPGATVSGDGSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLAEVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +     +V         S  +P+  V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAALVARVPDGWDVSA-VPLVRVADTRAGLGALARGWRRKFSMPLVAVTGSNGKTT 124

Query: 122 TKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     +  A +G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 125 VKEMIASIFAAAVGANERLATVGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +A++      H    + +E +A   A +   L   G      +D++  + +  
Sbjct: 185 AKIAEPTVALVNNAQREHQEFMATVEAVALEHASVIHALNPEGVAVFPANDAYASIWR-- 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I  F  +              +   + ++    + EV    +G H A N L 
Sbjct: 243 -VAATGNRIVDFALNTAERTTAAAVTGRFDGKRLSIETPEGAFEVTLQVLGDHNAHNALA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  +         T+ID++YNANP SM+AAI
Sbjct: 302 ATSAALASGVSLDAIRRGLESFGAVKGRLQVKQAALGALAGATVIDDTYNANPDSMRAAI 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+    FH ++        I  ++  G        A
Sbjct: 362 DVLASHAS----PRVLVMGDMGEVGDHGPEFHREIGAYAKERGIDALYAMGDASRDACTA 417

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q     G      ++VK S      R+++ 
Sbjct: 418 YGAG--AHHMADVGTLVAQLQ---QAGYGAAATLLVKGSRFMQMERVVDA 462


>gi|332711587|ref|ZP_08431518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
 gi|332349565|gb|EGJ29174.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lyngbya
           majuscula 3L]
          Length = 457

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 205/466 (43%), Gaps = 29/466 (6%)

Query: 10  LLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L+  +   ++GI     +    GI+ D+R++ P + F A++G  +DGH++   AV+KGA 
Sbjct: 10  LVDILAAKTVGIPEKILEKSFTGITTDTRNLEPGQLFLALRGEKFDGHNYAALAVEKGAL 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+      + +    +P+  V++ L A  ++A   R + +  +IA+TGSVGKTTTKE++
Sbjct: 70  TVIAEATNASQLE--GLPLIQVENTLKAYQQIARWWRDQFQIPVIAVTGSVGKTTTKELI 127

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+         +YNN IGVP TL  +  D D+ + E+ M   G+I  LT +  P +
Sbjct: 128 AAVLSTKGTVLKTQANYNNEIGVPKTLLELTPDHDYAVIEMAMRGSGQIAELTEIANPTV 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VIT +  AH+      E IA AK E+   +   G   LN+D+       A+       T
Sbjct: 188 GVITNVGTAHIGLLGSTEAIAKAKCELLAHMSNNGVAVLNHDNQRLIDTAAQVWQGQTLT 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               G                 Q      L+ + ME      G H A N L  L I  +L
Sbjct: 248 YGLEGGD------------VQGQLIAPEILKVEGMEFPIPLPGRHNALNYLAALAIGKLL 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D +T    L+V  P        +         ++DE+YNA   SM   ++ L  ++  
Sbjct: 296 GVDWETLRNGLNVELPPGRS----QRYELPNDVVILDETYNAGVESM---VAALEMLAQT 348

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGF---HVLALKDALPRSI 422
              R IAVLG M E+G  S   H  + + +   N+  +  L         A+   +  S+
Sbjct: 349 PGKRHIAVLGAMKELGTQSGELHQQVGQKVEQLNLDGLRILVDESDPEAEAIATGV-TSV 407

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            V      + L   +   +  GD ++ K+S+S G  +++      F
Sbjct: 408 PVESFCDSNPLVEHLLEFVQPGDRLLFKASHSVGLDQVVKQFKAGF 453


>gi|167904395|ref|ZP_02491600.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei NCTC 13177]
 gi|217425696|ref|ZP_03457186.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
 gi|254299370|ref|ZP_04966820.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|157809154|gb|EDO86324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 406e]
 gi|217391284|gb|EEC31316.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 576]
          Length = 468

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 202/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F     A           + S + +   G  ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR +  R A       T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       D
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACD 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A       H+ +    +   + ++      ++VK S      R+++ L  E
Sbjct: 409 AYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|330987130|gb|EGH85233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 456

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +                  +       +V  + +G H   N L  
Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|289624978|ref|ZP_06457932.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647036|ref|ZP_06478379.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868711|gb|EGH03420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 456

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +                  +       +V  + +G H   N L  
Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|51473774|ref|YP_067531.1| D-alanine ligase. [Rickettsia typhi str. Wilmington]
 gi|13235380|emb|CAC33730.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl ligase [Rickettsia typhi]
 gi|51460086|gb|AAU04049.1| synthetase [Rickettsia typhi str. Wilmington]
          Length = 448

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 142/463 (30%), Positives = 232/463 (50%), Gaps = 17/463 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N +  +S+ +   + F A++G   DGHD+I  A
Sbjct: 1   MI--WNSKTLSIALGIEISH---SVNCNAVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+  +  +       +  V+D   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGATAVIVSKQVEINDKD---KIILVNDSFNALQKMALYKRKNSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE L I L      +A  G++NN++G+ + LA M  D ++ IFELGM+H GEI  L  
Sbjct: 112 STKEALKILLQHDFIVFASRGNFNNYLGLLINLASMADDTEYAIFELGMNHKGEISELVQ 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+I+ I+ AHL  F+ IEEIA AK EIF+   K     +N  ++ +  + +   
Sbjct: 172 ILKPNIAMISNISEAHLEFFNSIEEIAEAKCEIFKNFSKNDIAIINASNNCYNKILSILK 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L I  IYSFG+SK +  +L  +K   EQ  ++  +  K +++    I  H A N    L
Sbjct: 232 NLSITNIYSFGRSKAS-AELIFYKTLGEQVHLKYYINNKFIDITIPFIPKHFANNYTGVL 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+ IL       I+  + +       K     +N     +I + YNA+P SMKAA+  L
Sbjct: 291 LIIDILG----KDIEIAANYLADISITKGRGEIINIQNSRVICDYYNASPQSMKAALEYL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q+    +    +++G+M E+G  SQ  H +L   +     + V+L G +   + D LP 
Sbjct: 347 KQVPADNK---TSIIGEMLELGWNSQRLHEELVPYILDSGCTKVYLIGAYTKYIYDLLPT 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            I   + + ++   + I       +++++K S      ++++ 
Sbjct: 404 KISKKFFKNVEEFIMHITDLFEYSELILIKGSRGVKLDKIVDY 446


>gi|229815100|ref|ZP_04445437.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
 gi|229809330|gb|EEP45095.1| hypothetical protein COLINT_02142 [Collinsella intestinalis DSM
           13280]
          Length = 482

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 192/471 (40%), Gaps = 20/471 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L        +   P     G+ IDSR++ P   F A  G   DG+ F   A++ GAG VV
Sbjct: 9   LQSTTGARFVAGDPDRVCRGVEIDSRAVTPDAVFVAFPGERVDGNAFAPAAIEAGAGAVV 68

Query: 70  --VN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                  ++V         +   +D    L +LA   R R + T+I ITGS+GKTTTK++
Sbjct: 69  MTCEPTRELVDLALEHGSSILVAEDPTEFLLRLAQGYRARLRCTVIGITGSIGKTTTKDV 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+   + +A  G++N+ IG+PLT+   P D    + E+GMS  GEI  L+   +P 
Sbjct: 129 LAACLAKRYRVHATAGNFNSLIGLPLTILSAPADTQMLVLEMGMSDFGEIERLSRCAQPT 188

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKA 237
             +IT +  +H+      E IA AKAEI  G+             + L+ +D F   +  
Sbjct: 189 FGIITKVGTSHIGMLGSREGIARAKAEIVSGMPASAENFEGNHSALVLHGEDDFTPFIIE 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +   G S + D      +   +   +                      ++ 
Sbjct: 249 NFARPAGLDVVLAGTSTDDDVCATHIELDEDGCPVFDLTFEDGSSFKTRLSVPGAQ-SVP 307

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L   ++         +    F   +  G+R +         +ID+SYNA+P SM A +
Sbjct: 308 NALFAAAVAHRLGVPGFEIDEAFGELQMTGRRTQVRHAACGARVIDDSYNASPESMAAGL 367

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
           ++ S +     G RIAVLG+M E+G+ ++  H  +    +    S +    G +   + D
Sbjct: 368 NLFSTLP--CTGSRIAVLGEMGELGDDAERLHALVGAYAAAKRPSMLICVGGENARVMAD 425

Query: 417 ALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           A          V    + D L       + + D+V+VK S   G  R +  
Sbjct: 426 AARLMGLDEGDVQVVPSCDALIRRYAGVMGERDLVLVKGSRFVGLDRFVEE 476


>gi|121998874|ref|YP_001003661.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Halorhodospira halophila SL1]
 gi|121590279|gb|ABM62859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Halorhodospira halophila SL1]
          Length = 450

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 124/464 (26%), Positives = 189/464 (40%), Gaps = 26/464 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+PL +   +        IG    G V G+++DSR       F A+ G   DGHDF   A
Sbjct: 1   MDPL-SLEQIAALTGAELIGNGG-GAVTGVALDSRRATSGSLFVALPGARCDGHDFADDA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA  V+    + A      +P   V+D   AL  L    R RS   ++A+TGS GKT
Sbjct: 59  AARGAVAVLGTRPVGA------LPTLVVEDPAAALAVLGAECRRRSGVRLVAVTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L+    T A  G+ NN +GVP  L R+     F + E+G +  GEI  LT 
Sbjct: 113 TVKELLAAMLAESGPTLATEGNRNNLLGVPEMLCRLGAGHRFAVIEMGANAPGEIAQLTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P + V+T   PAHL  F  ++ +A AK E+F+GL + G   LN DD F  L +    
Sbjct: 173 WAQPDVGVVTNAGPAHLEGFGSLDGVARAKGELFQGLPRQGVAVLNADDDFCGLWRE--- 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +   +FG    AD    + +    +  +++     +      G             
Sbjct: 230 MAGARRCLTFG----ADAGQFRHRGHGSRLELDLGGGWMAAPTPLLGGHNAQNIAAAAAC 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                + A       + +   P      R           L+D++YNANPAS++AAI  +
Sbjct: 286 AAALEVPARTILDRISSAAAVP-----GRLELRRGDHGGWLVDDTYNANPASLQAAIDTV 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +            +LG M E+G  +  +H           +  +W  G       +A   
Sbjct: 341 TGFQAAP----WLLLGAMGELGAETAEWHSRAGRRARAAGVERLWTLGEAAAPAAEAFGE 396

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +    L    ++ L    VV++K S S    R+   L
Sbjct: 397 GGRC--FDNASALIEACRAELPADAVVLIKGSRSAAMERVAAGL 438


>gi|118594408|ref|ZP_01551755.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440186|gb|EAV46813.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Methylophilales bacterium HTCC2181]
          Length = 448

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 144/472 (30%), Positives = 211/472 (44%), Gaps = 30/472 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L     L+Q I G            V G SIDSR++   E F AI+G ++DG ++I 
Sbjct: 1   MIALK-VSKLIQVIDGKIKQKQLEEDEEVFGFSIDSRTLRKNEIFIAIQGENFDGSNYID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++KG+  ++ ++    S          V +    L K+A          IIAITGS G
Sbjct: 60  VAIKKGSSWIITSSKNHKSN-----RCIYVKNTKETLCKIASYLVGEVSPKIIAITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTTKEM+   L             G+ NN IG+PLTL  +  +    + E+GM+H  EI
Sbjct: 115 KTTTKEMVANILYQHYPKNEILVTKGNLNNDIGLPLTLFNLKKNHTIVVLEMGMNHQDEI 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +  P IAVIT I  AHL NFS    IA AK EI  G +K G   L  DD +F  L
Sbjct: 175 TKLCKIAPPDIAVITNIGEAHLENFSSKNGIAKAKKEILLGAKKNGIAILPRDDVYFNYL 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           K+    L      SFG +KN++ +        + S   + +  + + +    +G     N
Sbjct: 235 KSDCLYL---RCISFGINKNSNIR-------LDLSSKVLTVDEEKINIESSLLGKENLMN 284

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           M   + + + L    +T IK +      EGR       +      +ID++YN+NP+SM  
Sbjct: 285 MAAAVSVANALELPTETIIKGMKTIDSIEGR---LEVKITASNIKIIDDTYNSNPSSMMM 341

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL Q         I ++GDM E+G LS+ +H D+   +   NI  V   G     L 
Sbjct: 342 AIDVLDQFKQKK----ILIVGDMAELGPLSKKYHTDIGHYILEKNIDLVMGIGNMTKYLI 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D L       +  + + L       L    VV+VK S       +++ + E+
Sbjct: 398 DVL--GTKGLWYPSKEDLLNETNKILKKDTVVLVKGSRFMRMEEIVDGINEQ 447


>gi|257867060|ref|ZP_05646713.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257873395|ref|ZP_05653048.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
 gi|257801116|gb|EEV30046.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC30]
 gi|257807559|gb|EEV36381.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC10]
          Length = 449

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 191/470 (40%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +             P      +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKEAAAVFGQQIENETP---FASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    II ITGS GKT
Sbjct: 55  KDNGAIATLWSHPTIE--PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   E       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   + G  +             E+S  +              +G +  +N L+ +
Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI        +   + L+ F   + R    +         ++ + YNANP +M   +   
Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
            ++     GRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+     
Sbjct: 341 RKLPL--AGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL   +     +    L   +  +L   D +V+K SN  G   +++ L 
Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|332366049|gb|EGJ43805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1059]
          Length = 456

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIPTAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLTTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIINEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    ++ +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKNSLSFECNFLEERIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDIEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D V++K SNS    +L+  L +
Sbjct: 405 KVQYFIKNDEKDQFEQLKQAVREKLTPADQVLLKGSNSMNLAKLVEDLED 454


>gi|103487369|ref|YP_616930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977446|gb|ABF53597.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 459

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 174/468 (37%), Positives = 239/468 (51%), Gaps = 17/468 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PLWT   + QA  G          V+G++ DSR +   + F A+KG + DGH FI  A+
Sbjct: 3   TPLWTARTIAQATGGI---ASADFTVSGVAFDSREVTRGDLFIAMKGENADGHSFIDKAI 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +V  T       ++  P   V D   ALN L  A+R RS   II +TGS GKT 
Sbjct: 60  AAGAAGIVCET-------AIDHPHVRVADSAAALNALGTASRARSHGRIIGVTGSAGKTG 112

Query: 122 TKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TKE L  AL   +    +  + SYNNH+GVPL+LARMP   DFGIFE+GM+H GE+  LT
Sbjct: 113 TKEALFAALDRFRPGKAHRSVKSYNNHVGVPLSLARMPSTADFGIFEMGMNHAGELAALT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+A++TTIAPAH+  F   E IA AK EIFEGLE  GT  + +D   +  L+AK+
Sbjct: 173 RIVRPHVAIVTTIAPAHMEFFGSEEAIADAKGEIFEGLEPGGTAIIPFDSPHYARLRAKA 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  + SFG ++ AD +   W       S +  Q+Q   +       G H   N L 
Sbjct: 233 EQHAAHIV-SFGLAEGADVRAVDWLPDGKGGSLVTAQVQDALLCFTIAQAGAHWVANSLA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V  +  D+  A  A +      GRG R+R A+  G   +IDESYNANPASM    +
Sbjct: 292 VLAAVKAVGGDLPAAGLAFAEMPGLTGRGARHRIAVPGGHILVIDESYNANPASM---AA 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            + Q++     R++A+LG M E+G   +++H  LA  L    +    L G  +  L  AL
Sbjct: 349 TIGQLAGESADRKVAILGAMKELGPGGEAYHAGLAAPLVAAGVQFALLVGEEMAPLAKAL 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              I   +          +   +  GD V+VK SNS G   ++  L+ 
Sbjct: 409 EGRIDFAHVPAHPDATARLGGLIRPGDAVLVKGSNSVGLSHVVTALIN 456


>gi|153214104|ref|ZP_01949238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|153826886|ref|ZP_01979553.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
 gi|124115530|gb|EAY34350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 1587]
 gi|149739302|gb|EDM53558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-2]
          Length = 453

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF+  A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VAGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|87122631|ref|ZP_01078508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
 gi|86162089|gb|EAQ63377.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Marinomonas
           sp. MED121]
          Length = 449

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 124/467 (26%), Positives = 191/467 (40%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++     G  +G      V  +  D+R       + AIKG  +DGH ++  A
Sbjct: 1   MLVELKLSEIASICNGSLLG--EDRLVYSVKTDTRLSLQGSLYLAIKGDSFDGHAYLETA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++ GA  V+   D          P+  VDD   A   +A   R      ++AITGS GKT
Sbjct: 59  LKNGALAVLSQQDSQVR------PLVLVDDTRQAYADIAHYLRQLFSGKLVAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE L+  L+   K      + NN IGVPLTL  +  +    + E G S +GEI  L  
Sbjct: 113 TIKEWLSQCLAERVKVLKTEKNNNNQIGVPLTLLGLKKEHQVAVIETGTSFVGEIAKLAQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA+I+  + +H   F  IE IA  K  +  GL   G   LN+DD +F+       
Sbjct: 173 ITTPDIAIISNASGSHYEGFGSIEGIAKEKGALLTGLTAEGVAILNHDDPWFDYWVGLLD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG    AD   ++ +  S+ S   +  QG+   +     G H    +   +
Sbjct: 233 KRA---CVSFGFGSGADLVAKQVELFSQSSKSILCYQGEEYVLHLAVPGKH---QVANAM 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L     T   A           KR           ++++ YNA+P S++AAI VL
Sbjct: 287 AVLLALLNLGVTFESACESLSRPLVIDKRLEFQYLNSQALVLNDCYNASPKSVEAAIDVL 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
                  +G++  VLG + E+GEL +  H  L E  +   ++ +   G        A   
Sbjct: 347 M---SQSQGQKWLVLGALGELGELEEKIHQQLGEYAAFAGVTGLISVGPIAAIAAKAYEE 403

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           R     Y E       FI+    +   ++VK S S    ++I +L  
Sbjct: 404 RGGVAVYCENNLQAAEFIKPLGKEN-AILVKGSRSAQMEQIIKVLEN 449


>gi|71733572|ref|YP_276234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554125|gb|AAZ33336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322454|gb|EFW78547.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330077|gb|EFW86064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330874998|gb|EGH09147.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 456

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELASEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +                  +       +V  + +G H   N L  
Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|297560288|ref|YP_003679262.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844736|gb|ADH66756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 459

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 124/471 (26%), Positives = 190/471 (40%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHDFILH 59
           M PL +   +  A  G      PQ  V G++ DSR ++P + F A++G    DGHDF   
Sbjct: 1   MQPL-SLAQIAAAAGGQVSDADPQTQVTGVAFDSRKVSPGDLFVALRGEEGRDGHDFAPS 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           AV+ GA  V+           L +P   VDD L AL   A A         ++A+TGS G
Sbjct: 60  AVRAGAVAVLAARP-------LDVPAIMVDDPLTALGGWARAHVEALSELDVVALTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS+NN IG+P+T      D    + E+G    G I +L
Sbjct: 113 KTSTKDLIAQVLQRAGATVFTQGSFNNEIGLPITALEATADTRHLVVEMGARGQGHIAYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P I  +  +  AH   F G E  A AK E+ E L       +   ++    + A 
Sbjct: 173 TQITPPRIGAVLNVGTAHAGEFGGPEMTAKAKGELVEALPSEAEGGVAVLNADDARVAA- 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     + +FG  ++AD          +       L   + +           Q    
Sbjct: 232 MSARTKARVVTFGVERSADVYATDVTLDGQG-RASFTLHTPTGDAPVRLQVVGEHQVPNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                    A +D A    ++   +     R R        T+++++YNAN  S  AA+ 
Sbjct: 291 LAAAAVAEAAGMDAAQIGKALTAAESLSEGRMRVTERPDGVTVVNDAYNANADSTAAALR 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDA 417
            L+ +     GR IA+LG+M E+G  S   H  +  + ++  I  +   G      L   
Sbjct: 351 ALAHLGRERAGRTIALLGEMRELGASSAEEHRRIGALAAVLGIDVLVAVGEGDARVLATE 410

Query: 418 LPRSIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 V    T      ++   +   GDVV+VK SN+ G   L + L   
Sbjct: 411 YGPDGRVE--ATKAAAGEWLSRYNFRAGDVVLVKGSNALGLGELADALAAR 459


>gi|119961244|ref|YP_947466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
 gi|119948103|gb|ABM07014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter aurescens TC1]
          Length = 496

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 135/477 (28%), Positives = 207/477 (43%), Gaps = 19/477 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T  ++     G   G  P      +  DSR       + A  G H DGHDF+  A
Sbjct: 1   MIAL-TAAEIADITHGRLTG-DPDIVPTSVVTDSRESTHGSLYVAKPGEHADGHDFVDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---------KATII 111
            ++GA LV+   ++  + G    P   V+D + A+  LA  +  R            T+I
Sbjct: 59  FERGAVLVLGEREVTDADG-RPFPAVVVEDAVLAMGALAAESVRRIRAERASRGEDFTVI 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK++L   LS+   T A  GSYN  +GVPLT+        F + E+G + 
Sbjct: 118 GITGSAGKTTTKDLLAGVLSTAGATVAPQGSYNGEVGVPLTVFAADATTRFLVIEMGATG 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG I++L  +V+P I V+  +  AH   F G+E IA  K E+ E L + GT  +N DD  
Sbjct: 178 LGHIKYLAEMVKPDIGVVLVVGTAHAGEFGGVENIAKTKGELVEALSEHGTAVINLDDGR 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              ++A++ A  +    S   ++  + +             ++ L      V        
Sbjct: 238 VAAMRARTKAKVLGFTSSPATTEEVEARNV-VVNGQGFPDFDLVLPDGGPAVEVRSRLIG 296

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                 +     +   A +  A  A S+         R          T+I+++YNANP 
Sbjct: 297 GHHVTNLLAAAAAAFAAGIPAADIATSLSSQSAASRWRMERTERADGVTIINDAYNANPE 356

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AA+  L+ +      R  AVLG M E+GE S   H  +   +   NIS + + G   
Sbjct: 357 SMRAALRSLADLGQ--GRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREA 414

Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL               ++ET++  +  +Q  L  GD+V+ KSSN  G   L + +
Sbjct: 415 RALYISAIQEGSWGDECSFTETVEEAYELLQRELEPGDLVLFKSSNGVGLRHLGDRI 471


>gi|294635005|ref|ZP_06713522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091604|gb|EFE24165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 458

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 131/466 (28%), Positives = 204/466 (43%), Gaps = 21/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L  AI     G      +  ++ D+R + P   F A++G  +DGHDF   A
Sbjct: 1   MIA-TTLRTLADAIGATLYGD--DAPLAAVTTDTRKLTPGCLFIALQGESFDGHDFAARA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA  ++V+  +      L +P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 58  CEAGAAALLVSRRL-----PLGVPQLLVADTRLALGQLAAWVRSQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L+         G+ NN IGVPLTL R+    DF + ELG +H+GEI +   
Sbjct: 113 SVKEMSAAILAQCGNVLYTAGNLNNDIGVPLTLLRLEPQHDFAVIELGANHVGEIAYSVA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH A++  +A AHL  F  +  +A AK EIF GL   GT  +N D + ++  +    
Sbjct: 173 LTRPHSALVNNLAAAHLEGFGSLAGVARAKGEIFSGLPAQGTAIINADSNDWDNWQQALP 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S       DF   + +   + +   +      + V     G H   N L   
Sbjct: 233 TQRVWR-FSPQAGSGVDFYASEVRSEVDGTHFVLHTPTGEIAVTLPLPGRHNIANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + L+  H   GR    R         L+D+SYNAN  SM AA  VL
Sbjct: 292 ALTMSVGASLTQVRQGLAGLHAVPGRLYPIRL---GEQQLLLDDSYNANVGSMSAAAEVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +     G R+ V+GDM E+G  +++ H  + E      I  V   G     + +A   
Sbjct: 349 GAMP----GYRVMVVGDMAELGVEAEACHRRVGEAARAAGIDKVLSVGGLSRLIGEA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLL 464
           S    +      +   ++  L +     ++VK S S    +++  +
Sbjct: 402 SGCGEHYMDKGAVIERLKHLLCEHAAITILVKGSRSAAMEQVVRGI 447


>gi|323352702|ref|ZP_08087672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
 gi|322121738|gb|EFX93484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis VMC66]
          Length = 456

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 202/476 (42%), Gaps = 32/476 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M      +++ + +     +       +     DSR I   + F  +KG   DGH+FI  
Sbjct: 1   MI--LDLYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIGSGDLFVPLKGAR-DGHNFIPT 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A  +GA   +    +             VDDVL A  +LA     + +  ++A+TGS GK
Sbjct: 58  AFAQGAAATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+ML   L++  KTY   G+YNN IG+P T+  MP + +  + E+G  HLG+I  L+
Sbjct: 112 TTTKDMLAQLLATSYKTYKTQGNYNNEIGLPYTILHMPENTEKLVLEMGQDHLGDIHLLS 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +P   ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A  
Sbjct: 172 ELAKPKTGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADC 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +              D  +   +    +  +  +       +     G + A N ++ 
Sbjct: 232 KLVR----------FGPDSDIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIA 281

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                          +A S       R +  + +       ++ + YNANP +M+  +  
Sbjct: 282 AYAALQEGVSEAAIAQAFSELELTRNRTEWKKASNGAD---ILSDVYNANPTAMRLILET 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            S I  +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D   
Sbjct: 339 FSTIPTNPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAK 398

Query: 420 R---SIHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 399 EIYPPGKVQYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|84516394|ref|ZP_01003753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509430|gb|EAQ05888.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Loktanella
           vestfoldensis SKA53]
          Length = 476

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 161/476 (33%), Positives = 246/476 (51%), Gaps = 18/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT H  + A QG + G        G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MTALWTAHQAVAATQGVTQG---DWVATGVSIDTRTLQPGDLFVALKDVR-DGHDFVAMA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA   +V+        +   P+  V DVL  L  L +AAR RS A I AITGSVGKT
Sbjct: 57  LEKGAAAALVSH--RPDGVASDAPLLVVPDVLKGLEALGIAARARSTARIAAITGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS   K +A   SYNNH GVPLTLARMP D DF + E+GMS+ GEI  L+ 
Sbjct: 115 STKEMLRTVLSRQGKCHAAEASYNNHWGVPLTLARMPADADFAVIEIGMSNPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+A++TT+A AHL++F  +  IA+ KA I +GLE  G   LN D +   +L+ ++ 
Sbjct: 175 MARPHVAMVTTVAAAHLASFESLAGIAAEKATIVDGLEPGGIAVLNGDVATTAILQDRAG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G + +     +     ++   +   + + +     G          G H   N +  L
Sbjct: 235 DIGAQIVLFGETAGAW--RISDLRISRDVTVIGATSPGHDYLFKLSVPGRHFGLNAVGVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +V+ L AD   A   L+++ P          +   A       L+D+++NANP S+ A+
Sbjct: 293 AVVAALGADPVAASLDLALWVPPAGRGTREIIQLDLANEFETIDLMDDAFNANPTSLAAS 352

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + V++   P        +GR+IA+LGDM E+G    + H  +A+   L  +  +  +G  
Sbjct: 353 LEVIAAGQPQDGVGRIVKGRKIAILGDMLELGTDEVAMHAAMAQNPHLQQLDLIHCAGPL 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L +ALP+     ++ T   L       +  GDVV+VK S       +++ + +
Sbjct: 413 MRHLWEALPQGKRGQWAATAAELAAQATRLVDTGDVVLVKGSKGSKVSLVVDAIRK 468


>gi|237807296|ref|YP_002891736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
 gi|237499557|gb|ACQ92150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Tolumonas
           auensis DSM 9187]
          Length = 459

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 137/470 (29%), Positives = 213/470 (45%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +   + Q   G  +        V+ IS D+R++A    F A++G  +D H F+  
Sbjct: 1   MIPM-SLAQIAQVTDGQLLNCPDATQTVSHISTDTRTVAAGALFLALQGERFDAHQFVAQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           AV KGA   VV+      +  +SIP   V D   AL ++A   R +    I+AITGS GK
Sbjct: 60  AVAKGAVAAVVSRP----LADVSIPQILVADTRIALGQIAAWVRAQLDLQIVAITGSCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM    L       A  G+ NN IGVP TL R+  D  + + ELG +H GEI + T
Sbjct: 116 TTLKEMCAAILQQAAPVLATQGNLNNEIGVPQTLLRLTPDDRYAVVELGANHPGEIAWTT 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P +AVI  +A AHL+ F  +  +A AK EIF GL  +GT  +N D  F++  +   
Sbjct: 176 SLVKPDVAVINNVAAAHLAGFGSLRGVAVAKTEIFSGLSDSGTAVINADSEFYDWWREIL 235

Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNML 297
                   +SFG ++  ADF+     Q  +             +++     G H   N L
Sbjct: 236 ----SVRTFSFGVENPKADFRAENITQDEQGIAAFTLISPLGQIDIQLPIPGLHNVSNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + + L   +      L+   P +GR    + + +    TLID++YNA+  S+ AAI
Sbjct: 292 AAAAVTTSLGLSLVQVQSGLANMLPVKGRFCVQKLSDD---LTLIDDTYNASVQSVMAAI 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +     G R+   GDM E+G  +   H  + E   L  +  V+  G       +A
Sbjct: 349 DTLAVMP----GYRVLAFGDMGELGADAADLHRQIGEHARLKKLDAVFTVGELSRHTAEA 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLL 465
              S    +    D L+  +Q+ +       ++ K + S     ++  + 
Sbjct: 405 AAAS--GQHFANKDSLYQALQTLMQHQRPMTILAKGARSARMEEVVAFVK 452


>gi|302533955|ref|ZP_07286297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
 gi|302442850|gb|EFL14666.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. C]
          Length = 474

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 188/477 (39%), Gaps = 22/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T  ++     G     +P   V     + IDSR + P   F A +G H DGHD+ 
Sbjct: 1   MIAL-TLAEIADITGGRPH-DIPDPSVRTAGPVVIDSRQVEPGSLFAAFEGEHVDGHDYA 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                     V      V +   + +P   V DV  AL  LA     R    ++A+TGS 
Sbjct: 59  G-------RAVAAGAVAVLAARPVGVPAIVVPDVEKALGALARTVVERLGTDVVALTGSA 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++   L     T    GS NN IG+PLT  +   +    + E+G   +G I +
Sbjct: 112 GKTSTKDLIAQVLQHHAPTVWTPGSLNNEIGLPLTALKATAETRHLVLEMGARGIGHIAY 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT L  P I ++  +  AH+  F G E IA AK E+ E L            +  +LL  
Sbjct: 172 LTGLTPPRIGLVLNVGTAHIGEFGGREAIAQAKGELVEALPSEAEG-GVAVLNADDLLVR 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A        FG++++AD +  + +                   V   +         
Sbjct: 231 AMSARTKARTVLFGEAEDADVRATEVRMTPAGQPSFTLHTPTGCSDVTLRLY-GEHHVSN 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                       +     A ++         R      +   T+++++YNANP SM+AA+
Sbjct: 290 ALAAAAVAHVLGMPAEEIATALSGAGTLSRWRMEVTEREDGVTIVNDAYNANPESMRAAL 349

Query: 358 SVLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLA 413
             L  +   G+   GR  AVLG M E+G+ S + H  +  +    N+S +    G     
Sbjct: 350 RALVAMGEAGKADGGRTWAVLGPMAELGDDSLAEHDAVGRLAVRLNVSRLVAVGGREASW 409

Query: 414 L----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L     +                    ++S L  GDVV+VK+S S G  R+   LL+
Sbjct: 410 LQLGAYNEGSWGEESVLVSDAQAAVDLLRSELRPGDVVLVKASRSVGLERVALALLD 466


>gi|148556852|ref|YP_001264434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
 gi|148502042|gb|ABQ70296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingomonas wittichii RW1]
          Length = 472

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 166/475 (34%), Positives = 234/475 (49%), Gaps = 22/475 (4%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  PLWT  D+  A+ G   G       +G++ DSR + P + F A+KG   DGH F+  
Sbjct: 1   MTAPLWTAFDIAAAVDGEVYG---DFRTDGVTFDSREVGPGDLFIALKGETTDGHRFLDK 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA   +V+            P   V D + AL+ L  AAR R    +I +TGSVGK
Sbjct: 58  AFAAGAAGAIVSDAC-------DGPHVRVADTMAALDALGAAARDRMHGRVIGVTGSVGK 110

Query: 120 TTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T TKE L   L      + +  + SYNNH GVPL+LARMP D   G+FE+GM+H GE+  
Sbjct: 111 TGTKEALYACLDRALPGRVHRSVKSYNNHTGVPLSLARMPADTRIGVFEMGMNHSGELAA 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LVRPH+A++T IAPAH + F+   +IA AK EIF+GL+  G   + YD    + L A
Sbjct: 171 LTRLVRPHVAIVTAIAPAHSAFFASEADIADAKGEIFQGLQPGGVAIIPYDSPHRDRLIA 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +       I +FG  + AD   +        + + + L    +       G H   N +
Sbjct: 231 AA-KPHAARILTFGMDRAADVHAQDVIPLDRGTLLSLVLPDAELTFTIAPPGEHWVSNAM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG-----FFTLIDESYNANPAS 352
             +  V  +  D+  A  A +      GRG+R   A+  G        LIDESYNANPAS
Sbjct: 290 AVIAAVWAVGGDLAAAGLAFAEMEGLPGRGQRSTIAVGSGAVGSGEALLIDESYNANPAS 349

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M    + +  +      RR+AVLG+M E+G  S  +H DLA  L    +    L G  + 
Sbjct: 350 M---AATIKMLGRERADRRLAVLGEMRELGAGSAGYHADLAGPLRDAGVDFALLVGSEMA 406

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           AL +AL   I   +    D     I++ +  GD +++K SN+ G  RL+  L  +
Sbjct: 407 ALANALEGRIEFEHVPDADAAIESIEAKIAPGDAILIKGSNAIGLSRLVAHLRTK 461


>gi|298488531|ref|ZP_07006561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156872|gb|EFH97962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 456

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 191/467 (40%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKSMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +                           +        +  N+L  
Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA----------RGCPGFTINSPLGVAQVQLNLLGA 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESYNANPASMKAAI 357
           L + + L A        +++     G                 +     +    +  A+I
Sbjct: 285 LNVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGTRVIDDTYNANPASI 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +    I     GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A
Sbjct: 345 NAAVDILTGFTGRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSA 403

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                H ++  +   L   + +       +++K S S     ++  L
Sbjct: 404 F--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|288553165|ref|YP_003425100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
 gi|288544325|gb|ADC48208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 114/451 (25%), Positives = 192/451 (42%), Gaps = 25/451 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLS 82
           +     +S D+R+I     F  +KG  ++GHD++  A++ GA   +      V +     
Sbjct: 20  EQSFTAVSTDTRTIVEGALFVPLKGERFNGHDYVDAAIKSGAQAALWEEGQPVPAALPDD 79

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             ++ V D L AL ++A A R++    +I ITGS GKTTTK++L   LS   +TY   G+
Sbjct: 80  FQLYVVKDTLFALQEMASAYRVKINPKVIGITGSNGKTTTKDILASLLSLEGETYKTQGN 139

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNHIG+PLT+  MP    + I E+GMS  GEI  L+ + +P +A++T I  +H+     
Sbjct: 140 YNNHIGLPLTILAMPSTCKYLILEMGMSGYGEIERLSEIAKPDLAIVTNIGESHMEQLGS 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
              IA AK EI EGL   G +F++ D+   +  K                 +        
Sbjct: 200 RAGIAKAKMEIKEGLSPAGFLFIDSDEPLLDGWKQ------------SSIMRVGFNHADI 247

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             +    +    Q   +        +G H  +N    + +              L     
Sbjct: 248 LVENVAATVDGYQFDIEGHHFELSLLGKHNVKNAAYCIAVARKFGLVTSKIQTGLRQ--- 304

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R           +++++YNA+P SM AAI  L  I  + +   + VLGDM E+G
Sbjct: 305 ISLTSMRLEKLTGNKGELIVNDAYNASPTSMIAAIDALKAIPSYEKR--VVVLGDMFELG 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS------IHVHYSETMDGLFLF 436
              ++ H  +A+V++   I+HV   G     + +             + +  T   L   
Sbjct: 363 TEEEALHKSVAQVITP-PITHVLTLGDRAKWIYEEASHISSSSTFDEMAHFTTKQELADH 421

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   +    V++ K+S       +I    ++
Sbjct: 422 LSKLVDQKTVILFKASRGMKLEEVITAYQDK 452


>gi|297581032|ref|ZP_06942957.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534858|gb|EFH73694.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 453

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF+  A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFVSQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VAGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|229820900|ref|YP_002882426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
 gi|229566813|gb|ACQ80664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Beutenbergia cavernae
           DSM 12333]
          Length = 474

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 200/477 (41%), Gaps = 18/477 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T  ++     G  +   PQ  V+ G+ IDSR       F A+ G H DGH ++  
Sbjct: 1   MIEM-TADEIASVTSGTVVAGDPQARVSEGVVIDSREATAGSLFVALPGEHVDGHAYVRV 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR------SKATIIAI 113
           A + GA   +V   +  +          VDD   AL  LA     R          ++ I
Sbjct: 60  AHENGATTSLVTRLVPDA---GDGAQVLVDDAQRALGDLARHVLARRREVADEPPVVVGI 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT+TK++L   L+ +   +A  GS NN +G+PLT+ R P D    + E+G    G
Sbjct: 117 TGSVGKTSTKDLLAEVLAPLGVVHAPPGSLNNELGLPLTVLRAPQDARVVVAEMGADAPG 176

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            + +LT +  P +AV+ T+  AHL+ F  ++ +A+ K+E+  GL   G   LN DD    
Sbjct: 177 NLTYLTSIAPPDVAVVLTVGRAHLAGFGSVDAVAATKSELVSGLAPGGFAVLNADDERVA 236

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +     A  + T  S           R     +      V       EV          
Sbjct: 237 AMAR--LAPRVVTFGSGDAVPPPSVGARDVTLDAAGRAAFVLTTPDGEEVPVTLALVGEH 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                       L   +  A  A ++ +       R          T++D++YNANP S+
Sbjct: 295 HVTNALAAAAVGLGLGIAAADVAGALANAGARSPHRMHVVERPDGVTVVDDAYNANPESV 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +AA+  L  I+   E R +AVLG+M E+G+ S+  H  +  V    N+  + + G    A
Sbjct: 355 RAALKALVAIAG-RERRSVAVLGEMLELGDSSRDEHDAVGRVAVRLNVDKLVVVGEGARA 413

Query: 414 LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +               ++  +D    ++ + L  GDVV+VKSS   G   L + L  
Sbjct: 414 MHTGASHEGSWGDEALFAPDLDAARAYLATELRPGDVVLVKSSKGAGLAALADELTA 470


>gi|320352818|ref|YP_004194157.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
 gi|320121320|gb|ADW16866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfobulbus propionicus
            DSM 2032]
          Length = 1011

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 110/482 (22%), Positives = 178/482 (36%), Gaps = 22/482 (4%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            W    LL A  G   G      +  +  DSR + P + F A+KG  +DGH +I  A ++ 
Sbjct: 523  WNERHLLAATSGKVAGGTLCRVLASVCTDSRQLRPGDIFVALKGEAFDGHQYIEAAAEQR 582

Query: 65   AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
            AG +V     +       +    V D L AL  LA   R        + AITGS GKTT 
Sbjct: 583  AGAIVAE--WMPPRMRPEVLYIEVKDSLRALGDLAAYRRRLLNGTIKVAAITGSSGKTTV 640

Query: 123  KEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMPVDVDFGIFELGMSHLGE 174
            KEM+    +   +                    G+PL+L  +       + E+GM+  GE
Sbjct: 641  KEMVASIFAEALQGSRTGMDAVLKTRGNFNNLVGLPLSLLPLEAGHRLAVVEMGMNVPGE 700

Query: 175  IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            I  L  +  P I  I  + PAHL     +  +A+AK E+F G+       +N DD     
Sbjct: 701  IARLVAIADPDIGCINNVHPAHLQGLGSLAGVAAAKGELFAGMRPEAVRVVNLDDPHVRA 760

Query: 235  LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               K     I    +    K              +  M   L  +          +    
Sbjct: 761  QAKKFAGEQIGFAVTPSGRKFGPQVRATRPDNLGEQGMRFTLHIEGWRARVTVPVFGAHN 820

Query: 295  NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                         A +   + A  +        KR       G   +++++YNANPASM 
Sbjct: 821  VSNCVAAAAIAHAAGIGPEVIAQGLQRYAPSVDKRLAVTELPGGLKVVNDAYNANPASMA 880

Query: 355  AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A +  ++    H   R +A LGDM E+G  S+  H  +  +++      + L+G     +
Sbjct: 881  AGLRTVAAF-GHRGCRHLAALGDMLELGAASEDLHAGIGALVASLGYDFLALTGMQATVM 939

Query: 415  KDALP----RSIHVHYSETMDGLFLFI-----QSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              A      +  ++        +  +I     +  L  GD +++K S      +L++ L 
Sbjct: 940  ARAASAAGMKEENIRVFANPRAMADWIYPMLARGDLAAGDWLLIKGSRGMRMEQLLDELE 999

Query: 466  EE 467
            + 
Sbjct: 1000 QR 1001



 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 98/505 (19%), Positives = 165/505 (32%), Gaps = 66/505 (13%)

Query: 4   LWTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T   L+QAI         G V    V  I+ DSR + P   F A++G   DG  +I  
Sbjct: 1   MITLAKLVQAIAPGANRRLSGTVLAQPVTAITSDSRQVVPGSLFVAVRGVKTDGRRYIPE 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A+ KG     V  D+   +   ++PV  VDD   AL +LA A      S+  ++AITG+ 
Sbjct: 61  AIGKGCLA--VVVDVDEGVDEWNVPVLLVDDCPAALGELAAAWNGYPASQMQLVAITGTN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----------------MPVDV 160
           GKTT   ++   L +       IG+ N        L                   +    
Sbjct: 119 GKTTCSWLIEEMLVASGFRPGVIGTVNYRYHGADGLHIIQDAPLTTPDPVTLQGLLRTMA 178

Query: 161 DFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D G+    + +S     +      R  +A+ T ++  HL     +E    AK ++F    
Sbjct: 179 DNGVTHVIMEVSSHALQQQRLGSTRFDVALFTNLSRDHLDYHQSMEVYFEAKKQLFHKHL 238

Query: 219 KTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           K   + +       E        + +L  + +   G   + +    +  Q  E     + 
Sbjct: 239 KEQGVAVVVLGPQAEGCDWGGLLTASLPAEQVIRCGLHGSCEVSAHQLTQTMEGFRCCLH 298

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L+G  +       G +   N+L   G+   L    D  ++ L+      GR +R R    
Sbjct: 299 LRGAEVNFASPLTGEYNVLNVLAAAGVGLGLGLVPDRFLEGLARVGRVPGRLERVRLPGE 358

Query: 336 QG-FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           Q      +   Y   P ++   +  L ++     GR + V G     G         L  
Sbjct: 359 QIGSGPAVFVDYAHTPDALDNVLRNLKKL---TTGRLLCVFG----CGGDRDRGKRPLMG 411

Query: 395 VLSLYNISHVWLSGFHVL--------------------------ALKDALPRSIHVHYSE 428
            ++      V ++  +                            AL +A           
Sbjct: 412 RVAAQLADAVVVTSDNPRTEAPEAIIDEIVAGVEAGGKSRTDAWALLNAAQPVDGYTVIA 471

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                     S    GD V++  K 
Sbjct: 472 DRRCAITAACSLAAPGDSVLLAGKG 496


>gi|300780828|ref|ZP_07090682.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532535|gb|EFK53596.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 505

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 141/504 (27%), Positives = 213/504 (42%), Gaps = 41/504 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T  D+ +   G    G  P+  V G +  DSR I     F A+ G + DGHDF  
Sbjct: 1   MIEI-TLADIARVTGGQLSPGADPEATVTGYVEFDSRKITEGGLFVALPGANVDGHDFAQ 59

Query: 59  HAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDVLGA--------------LNKLAVAAR 103
            A+ +GA   +V  D+ V ++    +     D+   A              + KLA    
Sbjct: 60  SAIDRGAVGALVARDVGVPAVILPPVEQIEGDNSDLAANDPDGSARAVVAGMAKLAAHVA 119

Query: 104 ----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                + +  I  ITGS GKT+TK+++   L+   +T A  GS+NN IG+P T+ R   D
Sbjct: 120 TTLVDKHQLRITGITGSAGKTSTKDLIASVLADAGETVAPPGSFNNEIGLPYTVLRCTED 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DF + E+    +G I  LTH+  P I V+  +  AHL  F   E IA AK E+ E L  
Sbjct: 180 TDFLVAEMSARGIGHIAQLTHVAPPQIGVVLNVGSAHLGEFGSRENIAQAKGELVEALPA 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD     + +++ A  +        +     +       +  S+       +
Sbjct: 240 DGIAILNADDELVAGMASRTKARVVCFSTDPRSNAEYVAEGITLDDVARASFTMHSPNSE 299

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +V     G H   N L T  +      D  T  +ALS  H             +    
Sbjct: 300 PQQVRLKVFGAHQVSNALATAAVGMEAGMDAATVARALSNAHSLSVNRMDVNTRADGV-- 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSL 398
           T+I+++YNANP SM+A I+ L   +    G R IAVLG+M E+GE S   H  L   L+ 
Sbjct: 358 TVINDAYNANPDSMRAGIAALGYTAAGRPGVRSIAVLGEMGELGEDSVEAHTALGNELAR 417

Query: 399 YNISHVWLSGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSL------------VD 443
           Y ++H+ + G           A  R I    +  ++     +   L              
Sbjct: 418 YRVTHLVVVGESAETAALLSRAAERGIESVSALDIEDATERVSEILRTVPLGEENWRDRP 477

Query: 444 G-DVVVVKSSNSCGFYRLINLLLE 466
             DVV+VK+SN+ G +R+   LL+
Sbjct: 478 DRDVVLVKASNAAGLWRVAERLLD 501


>gi|83719896|ref|YP_441662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|257137831|ref|ZP_05586093.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
 gi|83653721|gb|ABC37784.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis E264]
          Length = 468

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F                 + S + +      ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLYALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR    +    +    T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +
Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|218281655|ref|ZP_03488056.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
 gi|218217262|gb|EEC90800.1| hypothetical protein EUBIFOR_00623 [Eubacterium biforme DSM 3989]
          Length = 452

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/468 (25%), Positives = 200/468 (42%), Gaps = 20/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T H++   +     G +     ++G+ IDSR +     +  I G   DGH F   
Sbjct: 1   MI-VKTIHEITNMMHATLHGDIDDTKKIHGVVIDSRQVTKDVLYVPIIGQRVDGHTFAKQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            ++ GA + +   D V        PV  VDD L A+  L+ A        +I +TGS GK
Sbjct: 60  TIEDGALISLWQKDHVPYP---DFPVILVDDTLRAMQDLSKAYLDELHPLVIGVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+ K+ML    S  KKT    G+ N+ IG+PLT+     D++  I E+GM + GEI  LT
Sbjct: 117 TSCKDMLYSIFSQEKKTQKTQGNRNSEIGLPLTIFDFDEDIEVAILEMGMENKGEITQLT 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P I+VIT+I  AH+ N  G  +IA AK EI EG ++ G    NY+    + +    
Sbjct: 177 SIAQPDISVITSIGSAHMENLGGKLQIAQAKCEILEGTKENGLFLYNYESKEIQEVLCTL 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + SFG+  +            ++  +  +       V     G   A N L  
Sbjct: 237 DTENK-NVVSFGQGGDVSIT---SDIEYDKEGIVFKCNILDAPVHLRAFGDFQAMNALPC 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I        ++ +  L          K     ++     ++D++Y +NP S KAAI  
Sbjct: 293 IYIAKACHLKEESILNGLKNLE----MTKMRTQLISVKNAYILDDTYKSNPESAKAAIDT 348

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L ++  +     IA++ DM ++G   +  H D+        +  ++ +G       D   
Sbjct: 349 LMELPANK---HIAIISDMLDLGSEEKQLHYDVGVYAKEKGVDELYCTGPLSKETADGF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +  + ET D ++   +  L    ++++K S +     L++    +
Sbjct: 405 ---NGKWYETKDEIYEACKPLLDKDCIIMIKGSRAMKMDTLVDAFRGK 449


>gi|296160547|ref|ZP_06843363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
 gi|295889296|gb|EFG69098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. Ch1-1]
          Length = 470

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 117/468 (25%), Positives = 192/468 (41%), Gaps = 19/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +++  +    I G ++          IS DSRS  P + F AIKG  +D HDF+   
Sbjct: 1   MS-MFSLREAAALIPGSTVLGDDSVAFERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +     + +     +    ++P   V D    L  LA   R +    ++A+TGS GKT
Sbjct: 60  AARNVTAALASR----TPQDWNVPTLQVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSD 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +AV+      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGIAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  +          K     + + +      +EV    +G H A N L
Sbjct: 235 --VAATGNRIMDFALNSAERTTEAAVKGTFAGNILSIDTPEGHIEVTLQVLGDHNAHNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAA 356
                       +D   + L  F   +GR +  +         T+ID++YNANP SM+AA
Sbjct: 293 AATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAPRPA----PRVLVMGDMGEVGDNGPAFHREIGAYARERGIDALYAMGDASRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           A     + H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 409 AY--GANAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454


>gi|330815439|ref|YP_004359144.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
 gi|327367832|gb|AEA59188.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia gladioli BSR3]
          Length = 468

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 121/476 (25%), Positives = 198/476 (41%), Gaps = 20/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T       I G  +        + +S DSRS+   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLQQAAALIPGAIVTGDGNVSFSRVSTDSRSVGEGDLFVALKGERFDAHDFLADV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+ +        S+P   V D    L  LA   R R    ++A+TGS GKT
Sbjct: 60  AARGANAALVSREGA----PASLPQLQVADTRLGLGALAHGWRQRFAIPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A     G++NN IG+PLTL R+       + ELGM+H GE + 
Sbjct: 116 TVKEMIASIFAAAVGIDARLSTAGNFNNDIGLPLTLLRLSAAHRLAVIELGMNHPGETQT 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD +  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHASVIHALAPDGVAVFPADDKYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  +                  + ++      EV    +G H A+N L
Sbjct: 235 --VAATGNAILDFALNDADRSTAAAVTGTMSGGVLAIETPAGRAEVRLQALGAHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                       ++     L  F P +GR +  R    +     LID++YNANP SM+AA
Sbjct: 293 AAAAAALASGVALEAIRTGLEAFEPVKGRLQVKRAAVGSLAGAMLIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+Q +      R+ V+G+M E+G+   +FH ++        I  ++ +G        
Sbjct: 353 IDVLAQQAS----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALYATGDATRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           A   +    + + +  L   + ++       V+VK S      R+++ L  + PA 
Sbjct: 409 AYGDTAR--HFDDVGALLAALDAAGFGAAATVLVKGSRYTRMERVVDALTNQ-PAT 461


>gi|261379344|ref|ZP_05983917.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
 gi|284797784|gb|EFC53131.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria subflava NJ9703]
          Length = 455

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLG--LPVPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 58  LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLACVLRHRFGNEAVLATAGNFNNHIGLPLTLLKLNEKHRYSVIEMGMNHFGELSL 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT +  P++A++     AH+   F G+ +IA AK+EI+EGL   G   +  +D+     +
Sbjct: 174 LTQIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGIALIPCEDANIATFE 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +  L  +T          D      +        ++    + + VV    G H   N 
Sbjct: 234 AATAQLNAQTFGVAS----GDVHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       +      L  F   +GR    +        TLID++YNANP SMKAA
Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLAAMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|220910491|ref|YP_002485802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
 gi|219867102|gb|ACL47441.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cyanothece
           sp. PCC 7425]
          Length = 457

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 194/466 (41%), Gaps = 29/466 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL     +L A   H           GI  D+R + P E F A++G ++DGH F+  A+
Sbjct: 18  IPLLQLPQILAATAVHLDAGQG-LTAQGICTDTRGLQPGEVFLALRGANFDGHQFVQRAM 76

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++GA   + +      +     P   V D L A   L    R   +  +IA+TGSVGKTT
Sbjct: 77  EQGAIAAITDQ-----VLPGDFPQLVVKDTLVAYQTLGRWWRDTFQIPVIAVTGSVGKTT 131

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++   L           +YNN IGVP TL ++  D  + + E+GM  LGEI  LT +
Sbjct: 132 TKELIAAVLGLQGSVLKTEANYNNEIGVPKTLLQLTTDHAYAVIEMGMRGLGEIASLTRI 191

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP IAVIT +  AH+      E IA AK E+   +  T    LN D+    LL   +  
Sbjct: 192 ARPDIAVITNVGTAHIGRLGSREAIAQAKCELLAEMPTTSVAVLNADNP---LLIETATE 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      S+G     D +        E       L         + +       +L    
Sbjct: 249 VWSGKTLSYGL-TAGDLRGHLQGDMLEVEGQCFPLPLPGQHNALNYLAALAVAKLLGLDW 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +                       R +         L+DE+YNA P SM+AA+ +L+
Sbjct: 308 KPLLQG-------------LQVNLPEGRAKSHRLGEDVVLLDETYNAGPESMEAALRLLA 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
           Q        R+AVLG M E+G+ +   H  + + +   N+  + +   G    AL     
Sbjct: 355 QTPGKR---RLAVLGPMRELGDYALELHYQIGQKVRELNLDGLLVLDMGEEGTALVKGAA 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +      T   L  ++Q S+  GD ++ K+S+S G  R++N L 
Sbjct: 412 P-LPSQQFATHTELVNYLQDSIQPGDRLLFKASHSVGLDRVVNSLK 456


>gi|25028613|ref|NP_738667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|23493899|dbj|BAC18867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 528

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 118/498 (23%), Positives = 190/498 (38%), Gaps = 43/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +++ + G   G   P   V G +  DSR +     F A+ G   DGH++  
Sbjct: 25  MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 83

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD---------------------VLGALNK 97
            A+ +GA  V+           + +P   V                       V+ AL+K
Sbjct: 84  TAIGQGAVAVLAARP-------VDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSK 136

Query: 98  LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           LA             T++A+TGS GKT+TK+ +   LS    T A  GS+NN +G+P T 
Sbjct: 137 LARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTA 196

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R      + + E+    +G I  L  +  P I  +  +  AHL  F     IA AK E+
Sbjct: 197 LRCTTHTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGEL 256

Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                     G   LN DD F   +  ++ A  + T  +               +  + +
Sbjct: 257 VEALPAAADGGVAVLNADDPFVAAMAPRTTAR-VVTFSTANPPAPGAQYWAGDLELDDVA 315

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                L             +   Q           + A VD       +         R 
Sbjct: 316 RASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASAHRM 375

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFH 389
                    T+I++SYNANP SM+A ++ L+  +    +    AVLG M E+G+ +   H
Sbjct: 376 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 435

Query: 390 IDLAEVLSLYNISHVWLSGFHV--LALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             L   L+ Y++  +   G +    AL++ A    +              ++  + DGDV
Sbjct: 436 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 495

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK+SN+   +R+   L
Sbjct: 496 VLVKASNADQLWRVAEEL 513


>gi|227488525|ref|ZP_03918841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227543130|ref|ZP_03973179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091419|gb|EEI26731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181118|gb|EEI62090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 514

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 125/495 (25%), Positives = 198/495 (40%), Gaps = 30/495 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL    D+     G  + G  P   V G +  DSR+++    F  + G   DGHDF  
Sbjct: 1   MIPL-RLGDIAAITGGELVDGAEPDTMVTGPVEFDSRNVSAGSLFICLPGARVDGHDFAG 59

Query: 59  HAVQKGAGL-----------VVVNTDMVASIGSLSIPVFGVDD-------VLGALNKLAV 100
            AV +GA             ++V+      +   +       D       V+ AL+KLA 
Sbjct: 60  IAVDQGAVACLEGHRTGQPGILVDNSDADELSDSATSYVLEADNTGEGQAVITALSKLAR 119

Query: 101 AARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A   +    +  T+I +TGS GKT+TK+++   L    +T A  GS+NN +G P T  ++
Sbjct: 120 AHTKKAVEENGLTVIGVTGSAGKTSTKDLIASVLRQAGETVAPPGSFNNELGHPYTALKV 179

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + + EL    +G I  L  +  P I  +  +  AH+  F   E IA AK E+ E 
Sbjct: 180 GEHTTYLVSELSARAIGNIAHLARIAPPRIGAVLNVGTAHIGEFGSKENIAQAKGELVEA 239

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L            +  + L           I +FG    A  +    +  +         
Sbjct: 240 LPPAADG-GVAVLNADDPLVIGMRNRTSARIVTFGMDNPATVRAEDVELDAVARAAFTLC 298

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                        +   Q             A +D    A ++         R       
Sbjct: 299 IEGEKARRIQLRVFGRHQVYNALAAAAVGHAAGLDCESIADALSEHVSSSEYRMDVRTRA 358

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEV 395
              T+I++SYNANP SM+A I  L+  +   E     AVLG M E+G+ S + H  LAEV
Sbjct: 359 DGVTVINDSYNANPDSMRAGIDALAFTASGREDCHSWAVLGSMGELGDDSLTEHAALAEV 418

Query: 396 LSLYNISHVWLSGFH--VLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   ++ ++   G +  + AL  +A    ++     T       +   L  GDVV+VK+S
Sbjct: 419 LYNRHVDNLVAVGDNTAMGALALEARRYGVNTEVVSTTQEAADIVLRHLKPGDVVLVKAS 478

Query: 453 NSCGFYRLINLLLEE 467
           N+CG + + + +L +
Sbjct: 479 NACGLWAVAHTILAD 493


>gi|293391354|ref|ZP_06635688.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951888|gb|EFE02007.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 442

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 127/457 (27%), Positives = 197/457 (43%), Gaps = 27/457 (5%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V  +S DSR    +  FFA+KG ++D H ++  A ++G    VV          
Sbjct: 2   GDGTVTVENVSTDSRQAVNKGLFFALKGENFDAHHYVAKAAEQGCVAAVVEHPTEG---- 57

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----IALSSIKKT 136
            +I    V D   AL +LA   R +    ++A+TGS GKTT KEM+      +       
Sbjct: 58  -NIARLIVKDSRLALGRLAKWLREKINPKVVAMTGSSGKTTVKEMVASILQQSAVDSDDV 116

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               G++NN IGVPLTL R+     F + ELG +H+GEI + T L +P +A++  +  AH
Sbjct: 117 LFTQGNFNNDIGVPLTLLRLTERHKFAVIELGANHIGEIAYTTSLAQPDVALVNNVMAAH 176

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L  F  I+ +A+AK EIF GL K G   +N   ++ +  +A          Y    +  A
Sbjct: 177 LEGFGSIDGVATAKGEIFRGLTKNGVAIINLAHNYQQKWQA--DIGRHAVQYFAYDNPRA 234

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           DF   +     + +   +      +++    +G H   N L    +   + A      K 
Sbjct: 235 DFYAEQIHFSEQGASFLLHTPQGRVQINSPYLGEHNISNALAATALSMNVGATTAQVKKG 294

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L      +GR    +   N     L+D++YNAN  SMK+AISVL +        R+ V+G
Sbjct: 295 LETPSLVKGRLFPIQPCEN---LLLLDDTYNANVGSMKSAISVLQKYPA----FRVFVVG 347

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           DM E+G+ +Q  H ++ E      +  V   G     +           +      L  +
Sbjct: 348 DMGELGDNAQLCHQEVGEFAHAAKLDLVLSFGCSSGVISAV----NSGRHFTDKTELVTY 403

Query: 437 I-----QSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           +     Q       VV+VK S S     +I+LL   F
Sbjct: 404 LTPIIQQQLAQQKVVVLVKGSRSMKMEEVIDLLKGNF 440


>gi|167580469|ref|ZP_02373343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis TXDOH]
          Length = 468

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGERARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     +  F                 + S + +      ++V  + +G H A+N L
Sbjct: 235 --VAATGNRLVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR    +    +    T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +
Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|307718582|ref|YP_003874114.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
 gi|306532307|gb|ADN01841.1| hypothetical protein STHERM_c08940 [Spirochaeta thermophila DSM
           6192]
          Length = 470

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 208/479 (43%), Gaps = 26/479 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P  +   L   +    +    +   +  ++IDSR       F  ++G   DGH ++  A 
Sbjct: 7   PALSLDQLASIVGARLVAPSGERPPIRRVTIDSRECEEGVLFVPLRGRFTDGHLYLGEAF 66

Query: 62  QKGAGLVVVNTDMVASIGSLSIPV--------FGVDDVLGALNKLAVAARLRSKATI-IA 112
           Q+GA   +V   + +  GS  +            V D L AL  L        +  I I 
Sbjct: 67  QRGASAALVQETVFSEAGSALLKHVVQTRGALLVVTDTLEALQTLGEWYLSSLRVPIRIG 126

Query: 113 ITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           +TGS GKT+TKEML   LS    + +A  G+ N+ IGVPL++  +  + +  I E+G+ H
Sbjct: 127 VTGSSGKTSTKEMLRAVLSLHYSRVWATEGNLNSEIGVPLSILGIREEPEVVICEMGIDH 186

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GE+  L  +V+P++AV+T I  AHL  F   E IA  KA+IF   +     F+  D+ F
Sbjct: 187 VGEMDVLARIVKPNLAVVTGIGSAHLERFGTRERIAREKAKIFSSFDDRSVGFIPEDEEF 246

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F +L            +           +  ++    +    V L  K + +   G G H
Sbjct: 247 FHVLVE---------GWRGTFLPYGPATVEGFEGWESRGLEGVILSWKGLRIPLQGYGEH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           M +N L  + +   L        + L  + P  GRG+             + + YNANP 
Sbjct: 298 MVRNALGVIRLSGHLGVPPSMVAEGLQAYRPLFGRGELKEIGGVW----FLVDCYNANPE 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+A++  +  +        I VLG M E+G+ + S H  L + L+ Y    V L G  +
Sbjct: 354 SMRASLEGVRGLKGIRRR--IVVLGSMRELGDAAPSEHRRLGDYLAGYPADVVLLVGEEM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            A    L     V +  T++     + S + +GD+V++K S + G  R+I      + A
Sbjct: 412 EAAFAVLEGRSGVWWMRTVEEASSLLVSIVQEGDLVLLKGSRALGLERIIQDFEGRYHA 470


>gi|92114316|ref|YP_574244.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797406|gb|ABE59545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 452

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 197/466 (42%), Gaps = 21/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               +   +            V G++ D+R ++P + F A+ G  +DGH+F+  A   GA
Sbjct: 5   NVQTIATWLGAPP--PDVDAPVTGVTTDTRHVSPGDVFVALVGERFDGHEFLEQARASGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV+  + +      +    V D   AL  LA AAR      ++A+TG+ GKTT KEM
Sbjct: 63  VAAVVSRRVASP-----LAQIEVADTRLALGILARAARRAWSGELVAVTGNSGKTTVKEM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS +  T A  G+ NN IG P TL  +       + ELG +HLGEI + T L  P 
Sbjct: 118 LAAILSRVHPTLATRGNLNNDIGAPQTLLALSSAHRRAVIELGANHLGEIAWTTSLAIPD 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT +  AH+  F GI  IA AKAEI  GL  +GT  LN DD F+ + +      G  
Sbjct: 178 VAVITNVTGAHVGEFGGIGRIAQAKAEILLGLSASGTAVLNRDDRFYPMWRE---LAGDA 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  FG    A  +        +  +             V    +G +  +N L +    
Sbjct: 235 EVLDFGLDPAARVRAEALACDDDGRYAFTLFVDGVSLGRVRLALLGRYNVRNALASAAAA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +  +  L           R           L+D++YNANP +++AA++VL+++
Sbjct: 295 WALRVPAEDIVAGLEACR---TMPGRMMNVPGIRGTRLLDDTYNANPGAVRAALAVLAEM 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  R   LG + E+G  S+  H DL  V     I  +   G        A      
Sbjct: 352 PA----PRWCFLGALGELGAESERLHADLGRVARELKIDFLGTFGADARPAVAAF--GDR 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             + +    L  +    L  G  V+VK S S G  RLI  L  + P
Sbjct: 406 GCHFDDWAALVRYAHDHLPPGASVLVKGSRSAGMERLIADLRTDAP 451


>gi|167618577|ref|ZP_02387208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 200/471 (42%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+     S G  ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSR----STGEWNLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGVRARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETDA 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F                 + S + +      ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGLGRDTPAAVTGVLDGSRLAIDTPDGRVDVRLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                       +      L  F P +GR    +    +    T+ID++YNANP SM+AA
Sbjct: 293 AATAAALAAGVPLAAVKAGLEAFAPVKGRLQVTHAALGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G   L   +
Sbjct: 353 IDVLAACSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATLPACE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   S   H+ +    +   +         ++VK S      R+++ L  E
Sbjct: 409 AYGASAR-HFDDAAALVAALVAEHFGAHATLLVKGSRFMKMERVVDALANE 458


>gi|28211293|ref|NP_782237.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
 gi|28203733|gb|AAO36174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           tetani E88]
          Length = 459

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 205/469 (43%), Gaps = 21/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  ++++A+ G  +    +     IS D+R I  +  F A+KG  ++G+++   A QKG
Sbjct: 4   LSLEEIVKAVSGEILIKGNELGWEYISTDTRKIEEKAIFIALKGERFNGNEYTASASQKG 63

Query: 65  AGLVVVNTDMVASIGSLSIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A + +V+              V  V D   AL  LA   + + +  ++AITGS GKT+TK
Sbjct: 64  AFICIVDEVHFKKEEIKDYTTVIKVKDTSEALLDLAKYYKSKLEVKVVAITGSTGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L +  K +   G++NN IG+PL + ++    D  + E+GMS+ GEI  +     
Sbjct: 124 DLTASVLGAKYKVFKTEGNFNNEIGLPLMIFKLDKTYDIAVLEMGMSNFGEIHKMAKTAL 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA+IT I  +H+ N    + I  AK EI +   +   + +N +D     LK + + L 
Sbjct: 184 PDIAIITNIGISHIENLKSRDNILKAKLEIIDFFGEDNILIVNGEDDLLGNLKEEKYKLI 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                  G  KN +          +    ++   G  +++     G H   N L+ +   
Sbjct: 244 KT-----GLGKNHNIYAYDINLNEKSVSFKIFEDGDELQIDIPVPGKHNVLNSLLAIACG 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            I     +     +        R            F ++D+SYNA+P SMKAAI VL  I
Sbjct: 299 RIFKMSFEEIKNGILDLQTTSMRLDMVEGKK----FNIVDDSYNASPDSMKAAIEVLCNI 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
               +    AVLG M E+GE +   H ++ +     +++ + + G    A  +       
Sbjct: 355 KSKRK---FAVLGTMKELGEEAYRAHREIGKYAGEKSVN-LIVLGSFSKAYIEGYLEGSE 410

Query: 422 -----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++  ++  + +  ++  +L   DVV+ K+S S  F  ++    
Sbjct: 411 NKNNRGNILEAKDKEEVINYLDINLNSEDVVLFKASRSEHFEEMVESFK 459


>gi|270292369|ref|ZP_06198580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
 gi|270278348|gb|EFA24194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus sp. M143]
          Length = 457

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q ++    + + P   +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEVAQVVRAKNDVTVYPDSPLVKAEFDSRLITAGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +    +       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAVVTLSEKKVA------NQPYILVDDVLTAFQTLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L  
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAH 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMRPGSLLLAPADSIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQTLDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A       +    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIRQAFQN---LDLTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL DM E+G+ S   H  +   LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADMKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELSQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             HV+Y       +  +GL   +++SL   D +++K SNS    +L+  L  E
Sbjct: 403 IGHVYYFKKTADEDQFEGLVKQVKASLGTNDQILLKGSNSMNLAKLVESLENE 455


>gi|193222410|emb|CAL62929.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Herminiimonas arsenicoxydans]
          Length = 455

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 198/469 (42%), Gaps = 26/469 (5%)

Query: 1   MNPLWTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T + L  AI    + G       +G+S DSR +A    F A++G  +D H F+  
Sbjct: 1   MKA--TLNLLQTAIKNATATG---DAAFDGVSTDSRHVAVGNLFVALRGERFDAHAFLPQ 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             ++    VV           L++P   V D   AL ++A   R +    +I +TGS GK
Sbjct: 56  VAERKVAAVVAEKIPAG----LNVPALIVPDTRMALGEMASYWRRQFNLPLIGVTGSNGK 111

Query: 120 TTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           TT KEM+   L +           G++NN IGVPLTL R+       + ELGM+H GEI 
Sbjct: 112 TTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVPLTLLRLNAACKAAVIELGMNHPGEIA 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ + +P + ++      H      +E +A     +   L   G      DD+F  L +
Sbjct: 172 VLSAIAQPTVGLVNNAQREHQEFMESVEAVAQENGAVLASLPADGVAVFPADDAFTPLWR 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           + +         +FG S +AD +          + M V    +   +     G H  +N 
Sbjct: 232 SYAAQRKT---LTFGFSADADVRCTYAANVF-GNDMSVTAGNQKFTIALSAAGVHNVRNA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +     +    +  ++ L  F P  GR    +  L      +ID++YNANP S++AA
Sbjct: 288 LAAIACTLAIGIAPEAIVRGLQAFAPVSGR---LQRKLAASGALVIDDTYNANPDSVRAA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+Q++      RI VLGDM E+G   + +H ++        I HV   G        
Sbjct: 345 IDVLAQMAS----PRILVLGDMGEVGNDGRQYHEEIGAYARANGIEHVLALGELARHTVS 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A        + ++++ L   + +       V+VK S      R++  LL
Sbjct: 401 AFGAG--AQHYDSVEALNDALAAIFAADATVLVKGSRFMKMERVVQHLL 447


>gi|1171075|sp|P45450|MURF_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|575416|emb|CAA44303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechocystis sp.]
          Length = 454

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 120/475 (25%), Positives = 200/475 (42%), Gaps = 28/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           MN   +  D+   ++   +    +     +N I  D+RS+   + F A++G  +DGH FI
Sbjct: 1   MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GA  VV +  +     +  +  F V+D L A   +A   R R    II +TGSV
Sbjct: 61  PQALTAGAIAVVTDRPVEGLGET--VAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   LS     +    +YNN IGVP TL  +  D DF I E+ M   G+I  
Sbjct: 119 GKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIAL 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P I +IT +  AH+        IA AK E+                     +  
Sbjct: 179 LADIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQP-----------PESTAILN 227

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +AL ++T   F + K   + L             + L G S+ +   G+         
Sbjct: 228 RDNALLMETAQRFWQGKTITYGLEGGDVHGTVDGENLILDGVSLPLPLAGVHNASNYLAA 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + L     L      +   + +   +  R +  +         L+DE+YN    SM A++
Sbjct: 288 IALAQCLGLDWQQLQSGLTVELPKGRARRYQWGQDV------VLLDETYNDGLESMLASL 341

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
            +L+         R+AVLG M E+G+   +FH  +   +    +  ++L     +  A+ 
Sbjct: 342 DLLANTPGKR---RLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA 398

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 +          L   ++++L  GD ++ K+SNS G   +++ LL E P 
Sbjct: 399 AGA-NGVETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENPT 452


>gi|91785297|ref|YP_560503.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
 gi|91689251|gb|ABE32451.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia xenovorans LB400]
          Length = 470

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 195/468 (41%), Gaps = 19/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +++  +    I G ++       +  IS DSRS  P + F AIKG  +D HDF+   
Sbjct: 1   MS-MFSLREAAALIPGATVLGDDSVTIERISTDSRSAGPGDLFVAIKGDRFDAHDFLPDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +    V+V      +    ++P   V D    L  LA   R R    ++A+TGS GKT
Sbjct: 60  AVRNVSAVLVTR----TPQDWNVPALKVADTRVGLGALARGWRRRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETSE 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +AV+      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LAKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPEGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  +          K     + + +      +EV    +G H A N L
Sbjct: 235 --VAATGNRIMDFALNSAERTTEAAVKGTFAGNVLSIDTPAGRLEVTLQVLGDHNAHNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +D   + L  F   +GR +  +  L      T+ID++YNANP SM+AA
Sbjct: 293 AATSAALAAGVSLDAIRRGLESFGAVKGRLQVKQGVLGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLASRPA----PRVLVMGDMGEVGDNGPAFHREIGAYARDRGIDALYAMGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           A     + H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 409 AY--GANAHHVADIGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 454


>gi|56964124|ref|YP_175855.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
 gi|56910367|dbj|BAD64894.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus clausii KSM-K16]
          Length = 453

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 112/444 (25%), Positives = 194/444 (43%), Gaps = 22/444 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGSLSIPV 85
            +G+S D+R       F  +KG  +DGH FI  A++ GA   +    + V      +  +
Sbjct: 24  FSGVSTDTRQRMENGLFVPLKGERFDGHRFIEQAIEAGATGALWKEQEPVPEQLPETFQL 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V+D L AL  LA A R +    +I ITGS GKTTTK+++   L+     +   G+ NN
Sbjct: 84  YYVEDTLKALQALAQAYREKVNPFVIGITGSNGKTTTKDIVASVLAGTAAVHKTKGNLNN 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIGVPLTL  MP D  + + E+GM+H GEI  LT + +P+ A+IT+I  AH+ +    E 
Sbjct: 144 HIGVPLTLLAMPEDCTYAVVEMGMNHAGEISTLTQIAKPNAAIITSIGDAHIEHLGSREG 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           IA+AK EI +GL K   +  + D+        ++      +  +  K  +       +  
Sbjct: 204 IAAAKMEIADGLIKESWLLFDGDEPLLSPYNEQAETTVGFSDQAATKISDVKTLENGYVF 263

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +  ++ +                  N+      + +      +             
Sbjct: 264 YLNGARWQLTM--------------LGKHNVKNAAYAILLAQKLGFSNAMIQKQLSSLAI 309

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            G R          T+I+++YNANP SMKAAI  + ++  +     + VLGD+ E+G+  
Sbjct: 310 TGMRLEKLKGPNGSTIINDAYNANPTSMKAAIETVKELPHYKRR--VLVLGDIYELGQDE 367

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH----YSETMDGLFLFIQSSL 441
           ++ H  +A  +    I+ V   G     + +A            +++T+      ++   
Sbjct: 368 EALHKSVATAI-EPPITDVVTVGKKGRWIYEAQLDKKDSRISLVHADTVVEAAEILKPYY 426

Query: 442 VDGDVVVVKSSNSCGFYRLINLLL 465
               VV++K+S       ++  + 
Sbjct: 427 TKDTVVLIKASRGLALEEVLPAVK 450


>gi|330938044|gb|EGH41812.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 456

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MLKPMTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++
Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + T      + +        +         +     +  V  + +G H   N L  
Sbjct: 235 GNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAV 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAASCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|170696717|ref|ZP_02887832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
 gi|170138380|gb|EDT06593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia graminis C4D1M]
          Length = 475

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 188/467 (40%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N ++T  +    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   NAMFTLREAAALIPGATVIGDDSVAFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLADVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +     +V        G  S+P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAALVAR----VPGGWSVPALRVADTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     A     G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGVDARLATAGNFNNDIGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPDGIAVFPADDAYASIWR-- 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I  F  +              +   + +Q       +    +G H A N L 
Sbjct: 240 -VAATGNRIVDFALNTAERTTEAAVTGTFDGKVLSIQTPEGHTNITLQVLGNHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR   ++         T+ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKHAALGTLAGATVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+    FH ++        I  ++  G        A
Sbjct: 359 DVLASHAS----PRVLVMGDMGEVGDNGPEFHREIGAYAKERGIDALYAMGDASRDACTA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 415 Y--GASAHHVADVGTLVAQLQQAGFGPAATLLVKGSRFMQMERVVDA 459


>gi|37521967|ref|NP_925344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
 gi|35212966|dbj|BAC90339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Gloeobacter
           violaceus PCC 7421]
          Length = 450

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 199/467 (42%), Gaps = 34/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL      + G +P   V G+  D+R++AP   F A++G  +DGHD+   AV  GA
Sbjct: 8   TLQTLL---GAEAEGTLP-MSVRGVGTDTRALAPGALFVALRGERFDGHDYARQAVAGGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+    +        +P   V D L A   LA   R R    ++A+TGS GKTTT+E+
Sbjct: 64  ALVIAERPVA-------VPHLRVADTLEAYQTLARWWRDRCTLPVVAVTGSAGKTTTREL 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++     A  G+ NN +GVP  L ++     + + E+GM   GEI  L     P+
Sbjct: 117 IRAVLATAGPVLAPPGNENNDVGVPKLLLQLTGAHRYCVVEMGMRGPGEIARLARCAAPN 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + VIT +  AH+        IA AK E+   L  +G   LN +D        +  A  + 
Sbjct: 177 VGVITNVGSAHIGRLGSHAAIADAKCELLAELPCSGIAVLNGEDERLLSTARRHWAGPVL 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T                       S+  V L    +  +    G H   N L  L +   
Sbjct: 237 TYGLDAGDVM-------------GSFDGVHLHVDGIAFIPPLPGRHNHLNFLAALAVARH 283

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  ++    + L       GR    R    +G   LIDE+YN+ P S +AA++ L+ +  
Sbjct: 284 LGLELLQVRERLKDLQLPTGR---SRVIALEGDVQLIDETYNSAPESARAALAWLAGLP- 339

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIH 423
              GRRIAVLG M E+GE S+  H  L E      +  V +  +G    AL       + 
Sbjct: 340 ---GRRIAVLGQMRELGEFSRELHRVLGEHCRRLALDEVVVLEAGEDTEALLAGAGD-LP 395

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                    +  ++   +  GD ++ K+S + G  R++    + F A
Sbjct: 396 AVQLADHRAVAAYLADRVRPGDRLLFKASRAVGLERVLAEFQDLFRA 442


>gi|259507671|ref|ZP_05750571.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
 gi|259164718|gb|EEW49272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium efficiens YS-314]
          Length = 504

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 120/498 (24%), Positives = 192/498 (38%), Gaps = 43/498 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +++ + G   G   P   V G +  DSR +     F A+ G   DGH++  
Sbjct: 1   MIEL-TLGQIVEIVGGELAGGAQPDTTVTGTVEFDSRQVTAGGLFLALPGARVDGHEYAT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD---------------------VLGALNK 97
            A+ +GA  V+           + +P   V                       V+ AL+K
Sbjct: 60  TAIGQGAVAVLAARP-------VDVPSIIVPPVTPTDSNADIYAHDPEGHGAAVIEALSK 112

Query: 98  LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           LA             T++A+TGS GKT+TK+ +   LS    T A  GS+NN +G+P T 
Sbjct: 113 LARHVVDLAVGAHDLTVVALTGSAGKTSTKDFIATVLSMAGDTVAPPGSFNNEVGLPHTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R      + + E+    +G I  L  +  P I  +  +  AHL  F     IA AK E+
Sbjct: 173 LRCTTHTRYLVAEMSARGIGHIAHLARITPPRIGAVLNVGSAHLGEFGSRANIAQAKGEL 232

Query: 214 FEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E L      G   LN DD F   +  ++ A  + T  +               +  + +
Sbjct: 233 VEALPAAADGGVAVLNADDPFVAAMAPRTTAR-VVTFSTANPPAPGAQYWAGDLELDDVA 291

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                L             +   Q           + A VD       +         R 
Sbjct: 292 RASFTLHTPRGSWPVSLQVFGEHQVANALAAAAVAIEAGVDETTVVSGLSSHAAASAHRM 351

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFH 389
                    T+I++SYNANP SM+A ++ L+  +    +    AVLG M E+G+ +   H
Sbjct: 352 DVRTRPDGVTVINDSYNANPDSMRAGVAALAYTASARRDATSWAVLGQMGELGDEAVQEH 411

Query: 390 IDLAEVLSLYNISHVWLSGFHV--LALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             L   L+ Y++  +   G +    AL++ A    +              ++  + DGDV
Sbjct: 412 RALGAELAKYHVERLIAVGDNPNCRALREQAAALGVRTDAVPDAASAVDLLRHQVRDGDV 471

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK+SN+   +R+   L
Sbjct: 472 VLVKASNADQLWRVAEEL 489


>gi|257877138|ref|ZP_05656791.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
 gi|257811304|gb|EEV40124.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus EC20]
          Length = 449

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 192/470 (40%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +             P   +  +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKEAAAVFGQQIENETP---LASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    II ITGS GKT
Sbjct: 55  KDNGAIATLWSHPTIE--PPQDILVIPVTDTVKAFQQLARAYKEKLAPKIIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVEAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   E       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMMPADEPLLEPFVPNLT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   + G  +             E+S  +              +G +  +N L+ +
Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI        +   + L+ F   + R    +         ++ + YNANP +M   +   
Sbjct: 284 GIGRHFGVADEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---- 416
            ++     GRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+     
Sbjct: 341 RKLPL--AGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAN 397

Query: 417 -ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            AL   +     +    L   +  +L   D +V+K SN  G   +++ L 
Sbjct: 398 TALADKVRYFAIDEKPQLIASLIETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|15599612|ref|NP_253106.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|218893507|ref|YP_002442376.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
 gi|254244773|ref|ZP_04938095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|9950648|gb|AAG07804.1|AE004856_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126198151|gb|EAZ62214.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa 2192]
 gi|218773735|emb|CAW29549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 458

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  K
Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +        ADF+    ++ +                V   +        
Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|66047333|ref|YP_237174.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258040|gb|AAY39136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 456

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MLKPMTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++
Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     +  V  + +G H   N L  
Sbjct: 235 GNRNILTFALTDSAADVYASELS-RDARGCPAFNLNSPLGTARVQLNLLGTHNVSNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|302185273|ref|ZP_07261946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 456

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MLKPMTFSELVVPLDARLVGG--DCSFVGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  ++    +P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGAV----LPQLVVLDTRKALAQLGAMNRNAFLDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++
Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + T      + +        +         +     +  V  + +G H   N L  
Sbjct: 235 GNRNVLTFALSDSAADVYASELS-RDARGCPGFIINSPLGTARVQLNLLGTHNVSNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +   ++  +  L+   P +GR      +       +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAGCAMGVPLEGIVTGLNNVQPVKGRAVAQIVSNG---TRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|119485235|ref|ZP_01619620.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
 gi|119457463|gb|EAW38588.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Lyngbya
           sp. PCC 8106]
          Length = 467

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 116/476 (24%), Positives = 191/476 (40%), Gaps = 24/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L Q +               V  I+ D+R++ P EAF A++G  +DGH F+
Sbjct: 1   MFSPITLTQLSQILAVSLPPQCDTPQDTPVIAITTDTRTLQPGEAFLALRGERFDGHHFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+ D  A   + ++P+  V D L A   +A   R +    II +TGSV
Sbjct: 61  EQAIAQGAVCAIVDADFTAD--NPNLPLLTVQDSLAAYQTIARWWREQFTIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +    +    +YNN IGVP TL ++    ++ + E+ M   GEI  
Sbjct: 119 GKTTTKELIAAVLGTQGNVHKTQANYNNEIGVPKTLLQLNSHHNYAVIEMAMRARGEIAL 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP I +IT +  AH+      + IA AK E+   + +     LN D        A
Sbjct: 179 LTQIARPTIGLITNVGTAHIGRLGSEQAIAEAKCELLAEMPQNSVAVLNCDHHRLMDTAA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              +    T    G     +       +              +                L
Sbjct: 239 TVWSGETLTYGLEGGDLQGELIDAHTLRVEGLDLPLPLPGYHNASNFL---------AAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               I+             L      +    R +         ++DE+YNA   SM AA+
Sbjct: 290 AVFKIIQGQGLSPTELYTPLQTGLSVQLPEGRAKRYELSNDIVILDETYNAGLESMIAAL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
            +L +         IAVLG M E+GE S  FH  + ++    N+  +++       +A+ 
Sbjct: 350 KLLMETPGQR---FIAVLGTMKELGERSLEFHQKVGKMAQELNLDALFILADAEEAIAMA 406

Query: 416 DALPRSIHVHY----SETM-DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   V       E + + +   +   +  GD ++ K+S+S   YR++  + +
Sbjct: 407 TGAKGLSVVEIGKMEVENIHNQIAEQLIEFIQPGDRILFKASHSVELYRVVEKVRK 462


>gi|16330763|ref|NP_441491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
 gi|1653256|dbj|BAA18171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diamino-pimelate-D-alanyl-D-alanine ligase
           [Synechocystis sp. PCC 6803]
          Length = 454

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 125/475 (26%), Positives = 196/475 (41%), Gaps = 28/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           MN   +  D+   ++   +    +     +N I  D+RS+   + F A++G  +DGH FI
Sbjct: 1   MNSKLSLFDIRTFLESCLLSVTNLSEDIRINNICTDTRSLVSGDLFLALRGESFDGHSFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GA  VV +  +     +  +  F V+D L A   +A   R R    II +TGSV
Sbjct: 61  PQALTAGAIAVVTDRPVEGLGET--VAQFLVEDTLVAYQHIAAGWRQRFTIPIIGVTGSV 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   LS     +    +YNN IGVP TL  +  D DF I E+ M   G+I  
Sbjct: 119 GKTTTKELIAAVLSQFGNVHKTRANYNNEIGVPKTLLELSPDHDFAIVEMAMRGRGQIAL 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P I +IT +  AH+        IA AK E+        T  LN D++       
Sbjct: 179 LADIAKPTIGLITNVGTAHIGLLGSELAIAEAKCELLAHQPPESTAILNRDNALLMETAQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +       T    G   +              +     L    + +     G H A N L
Sbjct: 239 RFWQGKTITYGLEGGDVH-------------GTVDGENLILDGVSLPLPLAGVHNASNYL 285

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L  D              E    R R         L+DE+YNA   SM A++
Sbjct: 286 AAIAVAQCLGLDWQQLQSG----LTVELPKGRARRYQWGQDVVLLDETYNAGLESMLASL 341

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
            +L+         R+AVLG M E+G+   +FH  +   +    +  ++L     +  A+ 
Sbjct: 342 DLLANTPGKR---RLAVLGAMKELGDYGPTFHQRVGAKVKALGLDGLFLLANDPNTDAIA 398

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                 +          L   ++++L  GD ++ K+SNS G   +++ LL E P 
Sbjct: 399 AGA-NGVETQSFSDGPSLVAALKTTLQPGDRLLFKASNSVGLGAVVSQLLAENPT 452


>gi|218258245|ref|ZP_03474647.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225588|gb|EEC98238.1| hypothetical protein PRABACTJOHN_00301 [Parabacteroides johnsonii
           DSM 18315]
          Length = 428

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 202/443 (45%), Gaps = 24/443 (5%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           + F++   ++ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   ELFIHNPKVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NNHIGVPLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F 
Sbjct: 124 NLNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +   K E+++ + +T        D+  + LK  ++ +   T  S   +        
Sbjct: 184 SFEGVIKTKGELYDYMRRTKGKIFINQDN--KYLKEIANGIEQVTYGSDETAFAWGCV-- 239

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
               C+     E + QGK   V  H IG +   N L+ + +        +   +A++ + 
Sbjct: 240 --VSCNPYLTFEWKQQGKIHTVETHLIGNYNLDNALVAVAVGRFFKIPAERISRAIAAYE 297

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +   N+    LI ++YNANP+SMK A+   + +    +     +LGDM E+
Sbjct: 298 PTNNRSQLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPK---ALILGDMREL 350

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S   H ++   +   N   V+L G H                  T + L   ++ + 
Sbjct: 351 GPTSDELHTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNP 405

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
           ++G  V++K S+     R++ +L
Sbjct: 406 LEGYHVLIKGSHGMALERVVEVL 428


>gi|209519091|ref|ZP_03267897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
 gi|209500463|gb|EEA00513.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. H160]
          Length = 470

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 193/468 (41%), Gaps = 19/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +       I G S+          +S DSRS  P + F AIKG  +D HDF+   
Sbjct: 1   MT-MLSLRAAAAQIPGASVTGDDSVRFERVSTDSRSAGPGDLFIAIKGDRFDAHDFLPQV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++    V+V      +  + ++P   V D   AL  LA   R + +  ++A+TGS GKT
Sbjct: 60  AERNVAAVLVAR----TPENWNVPAIRVADTRAALGALARGWRRQFEMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHRLAVVELGMNHPGETEL 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +AV+      H    + +E +A   A +   L   GT     DD++  + + 
Sbjct: 176 LAKLAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALSPQGTAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F  +          K   +   + +      ++V    +G H A N L
Sbjct: 235 --VAATGNRIIDFALNSAERTTEAAVKGTFDGKRLSIDTPQGRVDVTLQVLGNHNAHNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                       +D   + L  F   +GR +  +         T+ID++YNANP SM+AA
Sbjct: 293 AATSAALAAGVSLDAIQRGLESFGAVKGRLQVKQAALGTLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLA----SRASPRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           A       H+   +  L   +Q +        +VK S      R+++ 
Sbjct: 409 AYGAG--AHHVADVGALVAQLQQAGFGATATFLVKGSRFMQMERVVDA 454


>gi|332976288|gb|EGK13148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 463

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 122/466 (26%), Positives = 216/466 (46%), Gaps = 16/466 (3%)

Query: 6   TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++    +G  +G    P   V+G+S D+R++     +  +KG  +DGH F + AV+ 
Sbjct: 4   TLREITHWTRGKLVGGVSDPHLLVDGVSTDTRTLQRNNLYVPLKGERFDGHAFWMDAVRA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + N ++        IP+  V+D L AL +LA   R   +  ++ ITGS GKTTTK
Sbjct: 64  GAAAALWNREVPLPKDPP-IPLIQVEDTLIALQELAAGYRRELEVKVVGITGSNGKTTTK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++    L++  + +   G+ NNHIG+PLTL  MP D +  + E+GM+H GEI  L+ +  
Sbjct: 123 DLTAAILATRYRVHRTQGNLNNHIGLPLTLLSMPPDTEVAVVEMGMNHAGEIARLSKIAA 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++T I  AHL        IA AK EI EG+  TGT+ ++ D+     L  +  A  
Sbjct: 183 PDLALVTNIGEAHLEFLGSRGAIADAKLEIREGMPSTGTLIIDGDEP----LLRERLAGE 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + +   G  ++ D ++   +    ++ +               +G H A N L+ +   
Sbjct: 239 ERPVIRVGFGESNDDRILDLEL-KGRAGIAFTSSATDTRFETGLMGKHNALNALLGIQAA 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L        + L        R      +       ++D+SYNA+P +++AAI  L+ +
Sbjct: 298 RLLGLTETGIREGLKGAEGSGRR---LETSTASNGMLVVDDSYNASPTAVRAAIDWLTSL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPR 420
             + E     +LGDM E+G   ++ H ++        I  V+  G     + +   A   
Sbjct: 355 EDYEEKW--VLLGDMLELGVQEEALHREVGSYAVQQGIPRVFTLGERARWISEGARAAAP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + V +  +++     ++     G  ++VK+S      R++  L +
Sbjct: 413 DLPVTHFNSVEEAVNTLRRRGGPGVAMLVKASLMARLDRVVQQLTK 458


>gi|257483451|ref|ZP_05637492.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 456

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 208/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    S+P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----SLPQLVVLDTRKALAQLGAMNRNAFIDKPVAAMTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI F  
Sbjct: 115 TTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELTPEHSAAVIELGASRVGEIAFTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKAFPVWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +                  +       +V  + +G H   N L  
Sbjct: 235 GNRNILTFALADPAADLHASDLSNDA-RGCPGFTINSPLGVAQVQLNLLGAHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAAACALGVTLEGIVAGLNNVQPVKGRAVVQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  S    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   +         +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGVEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|154494091|ref|ZP_02033411.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
 gi|154086351|gb|EDN85396.1| hypothetical protein PARMER_03436 [Parabacteroides merdae ATCC
           43184]
          Length = 428

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 202/443 (45%), Gaps = 24/443 (5%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           + F++   ++ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   ELFIHNPKVTTDSRNCPRGSIFFALKGDKFDGNQYAEKALASGCVYAVIDNPDYF----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLTTLQQLAHRHRKVIGCPIIGITGTNGKTTTKELLASVLSTKYNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NNHIGVPLTL R+  D +  + E+G SH G+I+ L  + +P+  +IT +  AHL  F 
Sbjct: 124 NLNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIAQPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +   K E+++ + +T        D+  + LK  ++ +   T  S   +        
Sbjct: 184 SFEGVIKTKGELYDYMRRTKGKIFINQDN--KYLKEIANGIEQVTYGSDETAFAWGCV-- 239

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
               C+     E + QGK   V  H IG +   N L+ + +        +   +A++ + 
Sbjct: 240 --VSCNPYLTFEWRQQGKIHTVETHLIGSYNLDNALVAVAVGRFFKIPAERISRAITAYE 297

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +   N+    LI ++YNANP+SMK A+   + +    +     +LGDM E+
Sbjct: 298 PTNNRSQLKKTENNE----LIIDAYNANPSSMKVALDNFATMPVSPK---ALILGDMREL 350

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S   H ++   +   N   V+L G H                  T + L   ++ + 
Sbjct: 351 GPTSDELHTEVVARIKEGNYDKVFLCGEHFQKAA-----GKDFTTYATTEELIEALRKNP 405

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
           ++G  V++K S+     R++ +L
Sbjct: 406 LEGYHVLIKGSHGMALERVVEVL 428


>gi|331016730|gb|EGH96786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 456

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 211/465 (45%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 NLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     S +V  + +G H   N L  
Sbjct: 235 GHRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANP S+ AA+ +
Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|91786969|ref|YP_547921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
 gi|91696194|gb|ABE43023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Polaromonas sp. JS666]
          Length = 459

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 190/463 (41%), Gaps = 17/463 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T    L  +    +          +  D+RS+   + F A+KG  +D HDF+  A  +
Sbjct: 1   MMTLQQALGWLPSARLVGDGSVKPLRVHTDTRSLQAGDLFVALKGERFDAHDFLAQAKAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   + +  + A+     +P   V D   AL +LA   R +    +IA+TGS GKTT  
Sbjct: 61  GAVAAIAHHGLAAA----GLPGLEVADSKLALGQLAAGWRSQFSLPLIAVTGSNGKTTVT 116

Query: 124 EMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +M+          + +A  G+ NN IGVPLTL R+      G+ ELGM+H GEI +L  L
Sbjct: 117 QMIAAILRAWKSTQAFATEGNLNNDIGVPLTLLRLRASHAVGVVELGMNHPGEIAYLAAL 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P +A++      HL   + +E +A     + + L   G      DD +  + +  + A
Sbjct: 177 AKPGVALVNNAQREHLEFMATVEAVARENGSVLQALGTDGIAVFPADDDYTAIWRGLAGA 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + T    G +                  +  +     ++   H  G H  +N L    
Sbjct: 237 RRVLTFAQTGPADVTAQAQWSGDCWQ----VAARTPAGPLDFPLHIAGRHNVKNALAATA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +      LS F P +GR +     L     TLID++YNANP SM+AAI VL+
Sbjct: 293 CALAAGVPLPVIAAGLSEFAPVKGRSRALTVRLANRVVTLIDDTYNANPDSMRAAIEVLA 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++       R+ V+GDM E+G+    FH +         I  ++  G        A    
Sbjct: 353 ELPA----PRLLVMGDMGEVGDQGPQFHEEAGRYAHARGIEQLFTLGAQSQRASTAFGAG 408

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            H      +      +      G  V+VK S      +++ ++
Sbjct: 409 RHFSQMADLAAAV--VAELPQAGS-VLVKGSRFMKMEQVVQVI 448


>gi|147678200|ref|YP_001212415.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274297|dbj|BAF60046.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 469

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 139/476 (29%), Positives = 216/476 (45%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L +   G  I   P   ++ +S D+R +   E FFA+ G  +D H+F+  A
Sbjct: 1   MKPV-TLKELERIACGRIIQGDPGTVLSSVSTDTRRLKKGEIFFALSGERHDAHNFLAQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG +VV+     +     +PV  V++ L AL  LA   R    A ++A+TGS GKT
Sbjct: 60  AGAGAGCLVVSR---TADLPAGVPVLAVENTLAALQALAAFNRKSCGARVVAVTGSTGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M    LS+  +T    G++NN IG+PLTL R+    +  + E+ M   GEI  L  
Sbjct: 117 TTKDMTASILSTRLRTLKSEGNFNNEIGLPLTLLRLDETCEIAVVEMAMRGAGEIDALCR 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P  AVIT I  AHL     +  IA+AK E+ E +   G   LN +  F      +  
Sbjct: 177 IAKPDCAVITNIGEAHLELLGTVSNIAAAKGEVLEHIPAGGFALLNAEAPFIRREAGRCR 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I     +G    AD +    +     S  EV L G+  E      G H   N L  +
Sbjct: 237 GKVIY----YGIDCPADIRAANIRPEGRGSRFEVILDGERREFFLPVPGRHNVMNALAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+   L    +   + L+       R +            +I+++YNANPAS KAA+ VL
Sbjct: 293 GVARELGLTWEEVARGLAAVTLTGMRLEIIEAK----NLRIINDAYNANPASAKAALQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +++  G  R +AVLG+M E+G  +   H ++ E  +   +S +   G     + +    
Sbjct: 349 KEMA--GGRRAVAVLGNMLELGPRAAEGHREVGEAAAGARVSCLVTVGDLAAGIAEGALD 406

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN-LLLEEFPAI 471
           +      +            ++  + DGDVV+VK S       ++  LL    PA+
Sbjct: 407 AGLPAERIFRCADNMQAAGILEELIRDGDVVLVKGSRGMKMEEIVRCLLKSREPAL 462


>gi|332976673|gb|EGK13513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 507

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 201/497 (40%), Gaps = 44/497 (8%)

Query: 5   WTFHDLLQAI---QGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           WT   L  A        IG+  Q         I  D+R I   + F AI G ++DGH+F+
Sbjct: 17  WTPEHLQAATAQLDSRWIGLDAQNKTTLNATRIITDTRKIQAGDTFLAIVGENFDGHNFV 76

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGS 116
             A++KGA  V+V+  + A    L++P   VDD   A  ++A   R +  K  +IA+TGS
Sbjct: 77  TAAIEKGAIAVIVSQPIEA----LAVPQLKVDDTRLAFGQIAAYRRQQHAKLKVIALTGS 132

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSY--------NNHIGVPLTLARMPVDVDFGIFELG 168
            GKTT KEML    + ++       S         NN  GVP+ L  +     + + ELG
Sbjct: 133 SGKTTVKEMLRHIFTQVEAANNAEQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLELG 192

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            +H+GEI + T +V+P +A I  I  AHL  F G + IA  KAEI++ L ++ T  + +D
Sbjct: 193 ANHVGEIAYTTAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQSLTESSTAVVPFD 252

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L A +       I+ +G         +      +    EVQ          H  
Sbjct: 253 DDYTQQLTAVAKQHTPHVIH-YGWQHLQHNSDKADSSQPQVYATEVQTTALQSCFKLHFD 311

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-----------CALNQG 337
                  + +TL +          A  A +                             G
Sbjct: 312 LDSQTSVVDITLPMSGEHNVSNALAAAACAYASGIAPEVIAAGLNQATSSKGRLGRQTLG 371

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +ID++YNANP SM       + +     G ++ VLGD+ E+G+ S   H  L + ++
Sbjct: 372 MHHIIDDTYNANPNSM----RAAADVLAAQAGYKVLVLGDIGELGDASSEEHYKLGQAIA 427

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD------VVVV 449
              I  +  +G   +              +  +T   L   +Q+ L           ++ 
Sbjct: 428 NKAIDLLLCAGEFAVDTIAGARNQGMQQAYAFDTKAELLPKLQAVLAQNTESQQICTLLF 487

Query: 450 KSSNSCGFYRLINLLLE 466
           K S S     LI+ L +
Sbjct: 488 KGSRSTTMETLIDDLSK 504


>gi|23465880|ref|NP_696483.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189439040|ref|YP_001954121.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227547552|ref|ZP_03977601.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|312132480|ref|YP_003999819.1| murf [Bifidobacterium longum subsp. longum BBMN68]
 gi|317483067|ref|ZP_07942068.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689510|ref|YP_004209244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|322691465|ref|YP_004221035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|23326583|gb|AAN25119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum NCC2705]
 gi|189427475|gb|ACD97623.1| UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211962|gb|EEI79858.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|311773408|gb|ADQ02896.1| MurF [Bifidobacterium longum subsp. longum BBMN68]
 gi|316915473|gb|EFV36894.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456321|dbj|BAJ66943.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320460846|dbj|BAJ71466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 483

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 136/484 (28%), Positives = 204/484 (42%), Gaps = 26/484 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114
              +GA + +V+ ++     S  +P   V D + AL +LA     R R       II +T
Sbjct: 60  TAGQGATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +   ++   +       +            +     +  V   G    V     G H   
Sbjct: 236 MAGLANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353
           N L    +        +T  + L+  H              +   FTLID+S+NANP SM
Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           KA ++ L   + +       V  LG M E+G    + H  +        I  +   G   
Sbjct: 356 KAGLNGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQ 415

Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459
             H+ AL  AL           V     +D     +          VV++K S++ G   
Sbjct: 416 DQHLDALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSA 475

Query: 460 LINL 463
           L   
Sbjct: 476 LAER 479


>gi|254515245|ref|ZP_05127306.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
 gi|219677488|gb|EED33853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR5-3]
          Length = 459

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 213/467 (45%), Gaps = 18/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L T   + Q +     G       +G++IDSR ++P + F A+ G   DGHDF+  A
Sbjct: 2   MSAL-TLSAIAQRLGVAYTGAS--LQFSGVAIDSRQVSPGDLFIALPGERVDGHDFVDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V   +      +SIP   V + L AL+++  A+R  S + ++AITGS GKT
Sbjct: 59  IARGAIAALVERPV-----QVSIPCLQVSNCLDALSEIGRASRDLSASVVVAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K +     S    T A  G+YNN IGVPLTLAR+  D  + I E+G +  G+I  L  
Sbjct: 114 TVKNLCRSIFSEAGSTVATAGNYNNEIGVPLTLARLQDDTRYAIVEMGATKRGDIAHLCT 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP I  +     AHL  F  + ++A  KAEI++GL  +G   +N D  +  L + +  
Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIYDGLGSSGAAIVNLDQPWVPLWRDRIA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G + +       +AD  +   ++C  E S   + ++G+S  + +   G H   N L  
Sbjct: 234 QAGAQALSYSLDDSSADLYVSGLQECGLEGSAFTLHIRGESRALKYPLPGRHSVANALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +       +D  +  L           R +        TLID+SYNANP S+      
Sbjct: 294 AALAIAAGLSLDQIVVGLEHAQ---AEPGRLQSERLGNDKTLIDDSYNANPGSV----RA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +     G  + +LG+M E+G  S   H ++ E+  L  I+     G  V    +A  
Sbjct: 347 AITLLAATAGESLLILGEMLELGAESPERHAEMGELARLSGITRFVGVGEAVRPAVEAF- 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  +  + + L   +   L   D ++VK S       +++ L E
Sbjct: 406 -GANGQWFASREALTPKLADLLGASDTILVKGSRGAAMESVLSALRE 451


>gi|288939890|ref|YP_003442130.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
 gi|288895262|gb|ADC61098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Allochromatium vinosum DSM 180]
          Length = 452

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 129/464 (27%), Positives = 196/464 (42%), Gaps = 15/464 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +WT    +    G   G       + +  DSR+    + F A++G  +DGH+++      
Sbjct: 1   MWTLAQAIARAGGVLHG--SDVAFSSVGTDSRADCTGQLFVALRGERFDGHEYVAA---- 54

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            A        MV     L +P + VDD    L +LA A R R    +IAITGS GKTT K
Sbjct: 55  -AQAAGAVAAMVDQPLPLDLPQWVVDDTRLGLGRLAAAWRDRFPGRVIAITGSNGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   LS   +  A  G+ NN IG+PLTL     D DF + E+G +H GEI ++T + R
Sbjct: 114 EMVAAILSQAGRVRATRGNLNNDIGMPLTLLSA-RDEDFLVLEMGANHHGEIGYMTEIAR 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+IT    AHL  F  +E +A AK EI  GL + G   ++ D  +  L +  +    
Sbjct: 173 PEVALITNAGRAHLEGFGSVEGVARAKGEIARGLPEDGVFVVSGDSPYLGLWRELAEGRR 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T    G +           +     +        + E     +      N+   L   
Sbjct: 233 MLTFALDGAADLTAGTESIGVEWGAAGFRTTFTARVADENWPLALSLAGQHNVRNALAAS 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +   A         +          R    L +     ID+SYNANP S+ AAI+VL+ +
Sbjct: 293 AGALALGLDRAAIAAGLESLTPVKGRLYPRLCREIGV-IDDSYNANPDSIAAAIAVLAGL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +    GRR  VLGD+ E+G  +   H ++ E      +  ++  G        A      
Sbjct: 352 T----GRRTLVLGDLGELGADAARLHAEIGEQAHAAGLDRLFTVGTLSAEASRAFGAG-- 405

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    D L   +++ L  GD V+VK S      R++  L  E
Sbjct: 406 AEHFADQDALLNRLKADLKPGDRVLVKGSRLARMERIVEALCAE 449


>gi|146276739|ref|YP_001166898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145554980|gb|ABP69593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 481

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 183/475 (38%), Positives = 253/475 (53%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A  G +          G+SIDSR++ P + F A+K    DGH F+  A
Sbjct: 1   MTPLWTSDEASAATGGRATRAFSA---TGVSIDSRTLRPGDLFVALK-DQRDGHAFVAQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   +V+   +    +   P+  V DVL AL  L  AAR RS+A +I +TGSVGKT
Sbjct: 57  LANGAAAALVSR--IPDGLTDGAPLLLVPDVLEALAALGRAARARSRARVIGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML  AL      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRAALRGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+APAHL  F  +  IA  KA I EGLE  G   L  D     +L A++ 
Sbjct: 175 LARPHLALITTVAPAHLEAFDSMTAIAEEKAAILEGLEPGGLAILPADLEVTPVLAARAS 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG+S  AD++L   +   E +        ++        G H A N L  L
Sbjct: 235 ALGV-PAMTFGQSGAADWRLSDIQITPEATIARASHADQTFLFKVLTPGRHFAANALAVL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
                L  D+      L ++ P  GRG R R AL+      F LID+++NANPAS+ A++
Sbjct: 294 AAAEALGLDLTITACDLGLWSPPAGRGTRERIALDPVDEAGFDLIDDAFNANPASVAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G    + H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRISTGRRIAILGDMLELGPTEAALHRAVADHPALAGIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|312795057|ref|YP_004027979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166832|emb|CBW73835.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC
           6.3.2.10) [Burkholderia rhizoxinica HKI 454]
          Length = 476

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/474 (25%), Positives = 202/474 (42%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++        + +S DSRS  P   F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAALIDGATVLGDDTVAFDQVSTDSRSCGPASLFVALKGERFDAHDFLPDL 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++G   V+V+     S G   +P   V D   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  ARRGVAAVLVSR----SPGDWRVPAIRVADTRAALGALAAGWRRRFALPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++           G+ NN IG+PLTL ++       + ELGM+  GE + 
Sbjct: 116 TVKEMIASIFAAAVGHAQRLSTQGNLNNVIGMPLTLLQLAPQHRLAVVELGMNRPGETQQ 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P IA++      H    + +E +A   A +   L   GT     DD +  + + 
Sbjct: 176 LARIAGPTIALVNNAQREHQEFMATVEAVALEHASVIHALPPDGTAVFPADDPYAGIWRV 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +    I          N+D  ++     ++   + ++ +  ++EV     G H A+N L
Sbjct: 236 AATDNRIVDFALRRPGANSDAAVQGTT--TDTGALRIETRAGALEVSLRAPGEHNARNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                       +D   + L  F P  GR   +   A+     T+ID++YNANP SM+AA
Sbjct: 294 AATAAALAAGVGLDAIRRGLETFEPVNGRLQAKLAQAMPWAGATVIDDTYNANPDSMRAA 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        +  ++  G        
Sbjct: 354 IDVLTMRQA----PRVLVMGDMGEVGDNGPAFHREVGAYARERGLDALYALGDASRDACT 409

Query: 417 ALPRSIHVHYSETMDGLF-LFIQSSL-----VDGDVVVVKSSNSCGFYRLINLL 464
           A     H H+ ++ + L    ++          G  ++VK S      R++  L
Sbjct: 410 AF--GPHAHHFDSAEALICALLRQDAVASERAAGATILVKGSRFMRMERVVQAL 461


>gi|326795774|ref|YP_004313594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546538|gb|ADZ91758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Marinomonas
           mediterranea MMB-1]
          Length = 452

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 187/466 (40%), Gaps = 16/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        +     G   G      V  +S DSR     + F A++G  ++GH F+  A
Sbjct: 1   MLKELKLSQIADICGGTLFG--EDACVIDVSTDSRDDLSNKLFLALRGEKFNGHSFVDKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+V+ D   S+     P   V + L A + +A   R   +  + +ITGS GKT
Sbjct: 59  IDQGASGVLVDVDSGVSLE----PRIVVHNTLLAYHDIARFLRDAFQGRVFSITGSNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K+ L  +L           ++NNHIGVP TL ++  +  F + E G S  GEI  L+ 
Sbjct: 115 SVKDWLAQSLEDFGCVLKTQSNFNNHIGVPKTLIQIENNHQFAVVEAGTSFPGEISILSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   + ++T  + +HL  F   + IA  K ++         + LN+DD FFE  K  + 
Sbjct: 175 TIHADVVIVTNASGSHLEGFGSTKAIAEEKGDLITYSSLYSKVILNFDDPFFEYWKGLTG 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                    F  S +              +     +     +     I       +   L
Sbjct: 235 KR-----EFFSFSLSDASADLYVSDLDLGASESSCIVHFRDQSSLVTIPAPGKHQVYNAL 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L       I AL+          R    L +    LID+ YNA+P S++AAI VL
Sbjct: 290 AVIGALMHVDVHFIDALNKVSKAVQVKGRMEFGLTKNNALLIDDCYNASPTSVEAAIDVL 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S   P  +     VLG + E+G+  +S H  L +  +   I  V   G       D   +
Sbjct: 350 SMQKPIKK---WLVLGALGELGDQEESIHRGLGKYAAEKKIDCVLAVGPIAGLAVDEFKK 406

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                    + + L  F+  +L +   V+VK S S     ++N++ 
Sbjct: 407 VGREGRVYASKESLAQFLL-TLNNEHAVLVKGSRSAKMDDIVNVIK 451


>gi|12007717|gb|AAG45236.1| MurF [Pseudomonas aeruginosa]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 197/468 (42%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 AVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  K
Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +        ADF+    ++ +                V   +        
Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|28871547|ref|NP_794166.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|28854798|gb|AAO57861.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 456

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     S +V  + +G H   N L  
Sbjct: 235 GHRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANP S+ AA+ +
Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|256830375|ref|YP_003159103.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579551|gb|ACU90687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 452

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 210/466 (45%), Gaps = 19/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T   +  A+   SI       V  + IDSR++   + FF I G   DGH+F   A
Sbjct: 1   MN--MTLTQIASAM-ASSIEQDHDLTVGRVCIDSRAVRKGDLFFCIVGQKLDGHEFARQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GA  VV +  +      L +PV  V D   AL +LA A R +++A +I ++GS GKT
Sbjct: 58  VENGACAVVASAPL-----DLDVPVLLVRDTTSALGRLARAWREKTRARVIGVSGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   LS+  +T     + NN IG+PL++  M  D DF + ELG+S  G++  L +
Sbjct: 113 TVKEMLAQVLSAAGRTAKNFRNLNNQIGLPLSILEMDGDEDFWVLELGISRPGDMDELGY 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P  A++  I   HL     +  +A  KA + + + K G   +N D      L  +S 
Sbjct: 173 ILAPDAALLVNIGACHLEGLGSLAGVAEQKAVLLDHVRKGGFACVNADYP---ELMQEST 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               K +   G    AD+   + +  +       ++  + +         H+A+N+   +
Sbjct: 230 KRSPKLVTFSGTGARADYSCLRQENVAGAISYTFRVGHEELRCTVSAGI-HVAENLAAVV 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L     T   ALS + P   R  + R     G +  ID++YNANP SM  +I   
Sbjct: 289 AMAMELGMTFATIESALSAYSPVAQRFVQTR----VGTWLFIDDTYNANPVSMARSIGEA 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++      R + VLGDM E+G  S   H +L  +++    SH +  G +   +KD L  
Sbjct: 345 KRL--GEGKRLVLVLGDMLELGRDSVRAHRELGGLIADTGASHCFFQGRYAEDVKDGLGD 402

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +         + +   + +   D  V++ K S  C   +  + L 
Sbjct: 403 YNGIFMKVSGAEEVLQALNAVRRDQGVMLFKGSRGCKMEQYYSALE 448


>gi|330964053|gb|EGH64313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 456

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G + I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     S +V  + +G H   N L  
Sbjct: 235 GHRNILTFALADAAADFYASELS-RDARGCPSFTMDSPLGSAQVQLNLLGTHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANP S+ AA+ +
Sbjct: 294 AAAAGALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|296120948|ref|YP_003628726.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
 gi|296013288|gb|ADG66527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Planctomyces
           limnophilus DSM 3776]
          Length = 480

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 126/479 (26%), Positives = 220/479 (45%), Gaps = 25/479 (5%)

Query: 7   FHDLLQAIQGHSIGI-----VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   + G  +G        +   +G +SIDSR +   + F A+     DGH F+  A
Sbjct: 6   LEVLATILCGTILGDQRTVAAAEKKFSGRVSIDSRKLKEGDLFLALSTGQRDGHLFLSDA 65

Query: 61  VQKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            + GA   ++     A   SL +  P   V D + AL  LA + R      ++ ITGSVG
Sbjct: 66  AKAGAAFAIIERHFEAEFASLKLSMPAVVVADSVLALQLLAASHRDEFDGLVVGITGSVG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRF 177
           KT+T+ ML   L +         ++NN +G+PL++  +     +F + E+G    G+I  
Sbjct: 126 KTSTRSMLYEVLQARYSGRQSPANFNNTLGLPLSILELECTRDEFAVLEMGAGQRGDIAR 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P + VIT+I  AHL+ F     +A +KAE+FE L + G  F    D F  +LK 
Sbjct: 186 LCEIAQPEMGVITSIGLAHLATFGTPLSVAESKAELFESLPENGVAFFPGHDPFALVLKD 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K+H        + G+    D+ +++ +   +     +  Q          +  H  QN  
Sbjct: 246 KAH----CRTVTVGEDTVNDWTIQQVRAVRDGYRFVMDGQDYF----IRTVARHFVQNAG 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + +   +          L+ + P  GR       +     T++D+ YNA+P++M AA+
Sbjct: 298 LAIAVGREVGISNAEIADQLAKWQPVSGRC----SLIPHPSLTILDDCYNASPSAMAAAL 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L ++    E R IAVLGDM E+GE+S+  H  + ++    +I  +   G H   +  A
Sbjct: 354 RTLEELGEREETRTIAVLGDMAELGEISEREHRRVGQLAGGLSIDFILAVGQHADLIAKA 413

Query: 418 LPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
              +      +  +  ++  ++ ++  + +GDV++VK S S G  R++  L    PA++
Sbjct: 414 AKATNLSLHRLAVARDVEMAWMLLECWIEEGDVILVKGSRSMGLERIVENLRSFQPAVR 472


>gi|227494644|ref|ZP_03924960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831826|gb|EEH64209.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 460

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 212/463 (45%), Gaps = 15/463 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + QA+ G  +G      V+G +  DSR       + A  G   DGH+FI  A+  GA   
Sbjct: 8   IAQAVNGKLLG--ADVVVSGSVETDSRECGSGSLYVARVGEATDGHNFIDSAIANGAVCA 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKTTTKE 124
           +V      SIG+       V+D   AL  LA     R        I+ ITGSVGKTTTK+
Sbjct: 66  IVTNP---SIGNPEHTRILVEDATYALGLLAKVHIERLRATGDLRIVGITGSVGKTTTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L+    T A + S+NN +G+PLT  +   +  + + E+G S +G + +LT LV P
Sbjct: 123 LTAGILAKFAPTVAPVASFNNEVGMPLTALKADENTRYLVLEMGASGIGHLEYLTGLVSP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V  ++  AHL  F  +  +A AKAE+ EG+++ G + LN DD     ++  +H   +
Sbjct: 183 DLGVELSVGRAHLGGFGSVAGLARAKAELVEGVKENGLVILNLDDPNVAAMETVAHTPVV 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                F    N    +       ++          + EV+   +G   A  +   L  +S
Sbjct: 243 Y----FSALGNEKADIYARNVTLDEFSHASFEAVTTGEVIPVHLGLVGAHQVNNALAAIS 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I         + ++  +  +         +     T ID+SYNANP SMKA ++VL++  
Sbjct: 299 ICQGFGLELPEIVAALNGMKAASPHRMSIVESRGATFIDDSYNANPDSMKAGLAVLAKQG 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
            H   +RIAVLG+M E+GE S   H ++ E++    +  +   G     +   L      
Sbjct: 359 EHAN-QRIAVLGEMMELGETSAQLHQEVGEMVVATQVDLLITLGEGAKEIAVPLTEKTTH 417

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            ++ ++      ++  +V GDVV +K SN  G +++ +  + E
Sbjct: 418 FHAGSVAEAVKLLEEKVVAGDVVFLKGSNGSGVWKVADKFVAE 460


>gi|296391125|ref|ZP_06880600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas aeruginosa PAb1]
          Length = 458

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  K
Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +        ADF+    ++ +                V   +        
Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEEAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|189423743|ref|YP_001950920.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
 gi|189420002|gb|ACD94400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Geobacter
           lovleyi SZ]
          Length = 462

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 204/468 (43%), Gaps = 17/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T   L     G  IG      V+GIS DSR+I P E F  ++G  +DGHD++    ++
Sbjct: 1   MFTPEQLTTITHGRLIG-PETASVSGISTDSRTIKPGELFIPLRGDRFDGHDYLNGLTER 59

Query: 64  GAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
              + + N   +       ++    V D L AL  LA A R R   T+I +TGS GKTTT
Sbjct: 60  RIQVSLCNESWLQHQQPPATLSCIAVRDTLRALGDLAAAFRKRFALTMIGVTGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   L  + +     G+ NN IG+P  L ++  +  + + E+GMS  GEI  L  + 
Sbjct: 120 KEMLAAILDQVDQGLKTSGNLNNQIGLPQMLFQLKPEHCWAVLEMGMSEPGEIDRLAEIA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I ++    PAHL +   +E +A AK E+ + ++  G   +N DD     L    H  
Sbjct: 180 CPSIGIVLNAFPAHLQSMGSVEAVAQAKGELLQRIQDGGLAVVNADDPRIASL----HQN 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 SFG  +            +E    ++     S+E+    +G H   N L     
Sbjct: 236 PSARRTSFGIKRGEVRAEAVQAIGTEGQAFKLVTPKGSIELRLKALGQHNIYNALAAAA- 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++T  + L  F P  GR      + N     LID+SYNANPAS  AA++ L  
Sbjct: 295 GLLELVGLETIAEGLEAFVPYTGRFHLETLSNN---RLLIDDSYNANPASCAAALATLQG 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDAL 418
           I   G  R    LGDM E+G      H  L    +      ++L G           +A 
Sbjct: 352 I--KGNRRAFVALGDMLELGRDELELHRQLGIQAASV-ADRLYLLGSLTKETAGAAAEAG 408

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             S  +  + + + +   I +   +GD++++K S      ++  LL  
Sbjct: 409 LASEAIISATSHEEIARDIHTHAGNGDLILLKGSRGMKMEKIAALLRA 456


>gi|238060251|ref|ZP_04604960.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
 gi|237882062|gb|EEP70890.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Micromonospora sp. ATCC 39149]
          Length = 466

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++ +A+ G  +   P   V G +  DSR       F A  G   DGHD+   
Sbjct: 1   MIPL-TLAEVAEAVGGRLVAADPAALVTGPVEFDSRKAGAGGLFVAFPGEKVDGHDYAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           AV  GA  V+   ++        +P+  V D L A+ +LA A   R    T+I +TGS G
Sbjct: 60  AVAGGAVAVLGTREVP------GVPMVLVGDALDAMGRLARAVVDRLPALTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++      +  T A  GS+NN +G P T  +   D  F + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLTVRLGPTVAPPGSFNNELGHPWTALQADQDTRFLVLEKGARGVGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +V P I+V+  +  AHL  F  +E IA AK E+ E L   G   LN DD   +++ A+
Sbjct: 174 CEVVPPRISVVLNVGVAHLGEFGSVENIALAKGELVESLPADGLAVLNADDPLVDVMAAR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++ +AD +          ++   +     S  V     G H   N L
Sbjct: 234 TAA----RVVRYGEAAHADVRAVDVTLDGRGRAAYTLVTPEGSAAVRLGLTGRHQVSNSL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL        R             T+ID+SYNANPAS   A+
Sbjct: 290 AAAAVARELGMPLAELAAALGELGLVSTRRMD--VFERPDGVTVIDDSYNANPASTAVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +   G GR +AVLG M E+GE  +  H+++  + +   +  + + G     + + 
Sbjct: 348 RALAGMR--GAGRAVAVLGYMAELGEYERQGHLEVGRLAAELGVDRLLVVGEPAAPIHEG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                                  ++S L  GDVV+VK S     + + + L 
Sbjct: 406 ATAVEDWGGESVLLTDQAAAVEVLRSELRPGDVVLVKGSR-YRTWEVADALR 456


>gi|116052450|ref|YP_792762.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|313106946|ref|ZP_07793149.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587671|gb|ABJ13686.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879651|gb|EFQ38245.1| UDP-N-acetylmuramyl pentapeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLSEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  K
Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +        ADF+    ++ +                V   +        
Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|229521236|ref|ZP_04410656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
 gi|229341768|gb|EEO06770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TM 11079-80]
          Length = 453

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGQVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMTQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G +   + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKYAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|237799286|ref|ZP_04587747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022142|gb|EGI02199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 456

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +LL  +    +G       +G+S DSR I   + F A+ GP +DGH+++   
Sbjct: 1   MLKPMTFAELLVPLDARRVGG--DCRFDGVSTDSRGIQAGQLFVALTGPRFDGHEYLEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +     +P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVEGAT----LPQLVVLDTRKALAQLGAMNRNAFVDKPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G ++I  AK EI EGL+ TGT  LN +D  F + + ++
Sbjct: 175 SLTKPHVAMITNAGSAHVGEFGGPDKIVEAKGEILEGLDATGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + T      + +        +         +       +V  + +G H   N L  
Sbjct: 235 GNRAVLTFALADTAADLYASDLS-RDARGCPGFTLNSPLGKAQVQLNLLGAHNVTNALTA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ V
Sbjct: 294 AAAACALGVSLEGIVTGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPASINAAVDV 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|229524391|ref|ZP_04413796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
 gi|229337972|gb|EEO02989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae bv. albensis VL426]
          Length = 453

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|213966571|ref|ZP_03394722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384714|ref|ZP_07233132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059798|ref|ZP_07251339.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131745|ref|ZP_07257735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928421|gb|EEB61965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 456

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR IAP + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIAPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEHEVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G E I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPERIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     S +V  + +G H   N L  
Sbjct: 235 GPRNILTFALADAAADFHAGELS-RDARGCPSFTMASPLGSAQVQLNLLGTHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANP S+ AA+ +
Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|90416332|ref|ZP_01224264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
 gi|90332057|gb|EAS47271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2207]
          Length = 455

 Score =  232 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 211/467 (45%), Gaps = 16/467 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       D      G  +   P    +G+SI+SR+IA  + F A+ G   DGH+F+   
Sbjct: 1   MINSLRLTDAAIRFGGTLLN--PDCEFDGVSINSRNIAEGDLFVALIGERLDGHEFLADV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             + A  +VV++    +   L +P + V+D   AL +LA   R     T+IA+TGS GKT
Sbjct: 59  TDR-ASGLVVSS----ADTDLPLPQWVVEDTTVALGQLAQLQREAFSGTVIAVTGSTGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K++++  L      +A  G+ NNHIGVPLTL  M  D DF + E+G S   EI +L  
Sbjct: 114 SVKDLISAILGGFGTVHATKGNLNNHIGVPLTLLDMQQDSDFAVIEMGASAGSEISYLCS 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I++I  +  AHL  F  +E IA+AK EI+ GL+  GT  LN D  +     A   
Sbjct: 174 IAKPQISLINNVQSAHLEGFGSVEGIAAAKGEIYSGLDTDGTAILNLDQPWQAEWMALIG 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                T        +      +  +     +        S+E     +      ++   L
Sbjct: 234 DRECITFSVDDDCADISASDIELMESGCCRFTLHLFTDMSLESQVVNLAIPGRHSVSNAL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +   A   +  + +S     +   +R +         +ID+SYNA+P S++AAI VL
Sbjct: 294 AAAACAVAAGASIEQIVSGLEAAQSPARRLQAKDLAQGGQIIDDSYNASPESVRAAIDVL 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       GRR+ VLGDM E+G  ++  H ++ +  S   I  ++  G    A       
Sbjct: 354 A----SRPGRRVMVLGDMAELGADAEQLHSEVGDYASSAGIDQLYTLGNLSAAASAVF-- 407

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLE 466
               H+   ++ L   + + +   D  ++VK S S     ++++L+ 
Sbjct: 408 --KGHHFTDLESLKAPLFNEIEHSDLTLLVKGSRSSKMDLVVDMLVA 452


>gi|255020009|ref|ZP_05292082.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970538|gb|EET28027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 448

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 138/463 (29%), Positives = 212/463 (45%), Gaps = 21/463 (4%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +T  ++ Q   G  + G  P+  ++G+  D+R+      F A++GP +DGHDF+  A + 
Sbjct: 4   YTLREIAQRTGGSLLQGTDPEKEIHGVGTDTRTHLSGRLFVALRGPRFDGHDFVEAARKA 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+V             P   V D L AL  LA A R     ++ A+TGS GKTT K
Sbjct: 64  GAAAVLVQRPSPG-------PGVLVADPLAALQVLAAAWRRELGTSLAAVTGSCGKTTVK 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   L       A  G+ NNHIGVPLTLA +  +    + E+GM+H GEI  LT + R
Sbjct: 117 EILAAMLRQSGPCLATRGNLNNHIGVPLTLAELGPEHRHAVVEMGMNHAGEIAVLTRMAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A+I    PAH+ N   I  IA+AK EI EGL   G   +N DD + +    ++    
Sbjct: 177 PDLALINNAGPAHIENLGSIAAIAAAKGEILEGLSAHGIAVINGDDEYADYWAERAPGE- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++ F           +W+   +   ++++    ++ +     G H   N+L      
Sbjct: 236 ---VWRFSLDDRPARVRGQWRPQGKGGVLDLRAPQGNVSLRIPLSGRHNGANVLAATTAA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D   +A+    P  GR +            ++D++YNANPAS++AA+ VL+  
Sbjct: 293 LALNLGLDQIARAVEALTPAPGRLQWREGKGG---SRILDDTYNANPASVEAALRVLA-- 347

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                GRR  VLGDM E+G  ++  H  +        I  V+  G        A   +  
Sbjct: 348 --EQPGRRYLVLGDMAELGADAELHHQQMGGHARALGIDGVFTLGSLSRTTSRAFGPA-- 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +    + L   + S L    VV+VK S +    R++  L E
Sbjct: 404 GTHFVEREALVDAVLSMLAPDAVVLVKGSRAAHMERVVAALTE 446


>gi|238791169|ref|ZP_04634808.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
 gi|238729302|gb|EEQ20817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia intermedia ATCC 29909]
          Length = 427

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 199/438 (45%), Gaps = 18/438 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R +     F A+KG  +DGHDF        A        +V+    +  P   V D
Sbjct: 2   TIDTRKVTAGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVGAPQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL + A   R +  A ++A+TGS GKT+ KEM+   L          G++NN IGVP
Sbjct: 57  TRLALGQFAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGNVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLSPEHDFAVIELGANHVGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAKAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EIF GL   GT  +N D + +   +   H   +      G +++ DF     +   + +
Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQEMLHNKRVWYFSPRG-AEDIDFYASDVRITPQAT 235

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     ++ +     G H   N L    +   + AD+    + L+      GR    
Sbjct: 236 HFTLHSPFGTIAIELPLPGRHNIANALAATALAMSVGADLAAVRQGLAQLQAVPGRLFPI 295

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           + +       L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+G+ +   H 
Sbjct: 296 QLSAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVLVVGDMAELGDTAVDCHR 348

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448
            + E      +  V   G     L DA   S +  + +  + L   +   L++  V  V+
Sbjct: 349 QVGEAARQAGVDKVLSVGSLSQTLSDA---SGNGEHFQDKNTLAARVSELLLEHPVITVL 405

Query: 449 VKSSNSCGFYRLINLLLE 466
           +K S S     ++  L E
Sbjct: 406 IKGSRSAAMENVVRALQE 423


>gi|254238921|ref|ZP_04932244.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
 gi|126170852|gb|EAZ56363.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           aeruginosa C3719]
          Length = 458

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 133/468 (28%), Positives = 198/468 (42%), Gaps = 22/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M        L  A+    IG       + +S DSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLEPLRLSQLTVALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  +     +P   V D   AL +L    R +    + A+TGS GKT
Sbjct: 59  AAKGAVAALVEREVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKT 114

Query: 121 TTKEMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEML   L       +   A  G+ NN +GVPLTL ++       + ELG S +GEI 
Sbjct: 115 TVKEMLASILRTQAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIA 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L RPH+A+IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  K
Sbjct: 175 YTVELTRPHVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWK 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+  A G   +        ADF+    ++ +                V   +        
Sbjct: 235 AR--ASGRPLLTFSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVAN 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     +         I A              +  L      +ID+SYNANPASM AA
Sbjct: 293 ALAAAAAAHALGVPLGGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +LS  S    GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     
Sbjct: 351 IDILSGFS----GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQ 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A   +    +      L   + +       +++K S S    +++  L
Sbjct: 406 AFGATGR--HFADQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 450


>gi|170781764|ref|YP_001710096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169156332|emb|CAQ01480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 484

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 139/480 (28%), Positives = 218/480 (45%), Gaps = 25/480 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T  ++ +A+ G  +       Q  V+G+   DSR I P   F A  G   DGH F
Sbjct: 16  MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIGPGGIFVAKPGEETDGHLF 74

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112
              AV+ GA L++V  ++      L +P   V DV+ AL +LA       R   +  ++A
Sbjct: 75  APWAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGELRMVA 129

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTTTK +L   L +  +T + + S+NN +G PLT+ ++     F + E+G S L
Sbjct: 130 VTGSNGKTTTKNLLHAILETQGETVSPVASFNNEVGAPLTMLKVTRSTRFLVAEMGASGL 189

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD   
Sbjct: 190 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 249

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +  K+ A  +     FG+   A  +       +  +   + L   S   V   +    
Sbjct: 250 ASMSDKTQAPVLW----FGRDARAAVRATDIVASAAGTTFTLHLPDGSTRPVSFRVLGEH 305

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                +     +        AI  +S     +   +     L     T+I+++YNA+P S
Sbjct: 306 HVTNALAAAAGAWALGVDGDAI--VSALQTVQRAERWRMEVLGGNGVTVINDAYNASPDS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G    
Sbjct: 364 MAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPAR 422

Query: 413 ALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L  +A+ +        ++E        +   L DGD+V+VKSSNS G   L + L E++
Sbjct: 423 RLHLEAIGQGSWDGESIFAEDAAEAREILDGILRDGDLVLVKSSNSAGLRFLGDELGEKY 482


>gi|325568402|ref|ZP_08144769.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158171|gb|EGC70324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 449

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 202/470 (42%), Gaps = 28/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +   A+ G  I    +  +  +  DSR I     F  + G   DGH+F   A
Sbjct: 1   MN--FTVKE-AAAVFGQPI--ENETPLASVEFDSRLIKENSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   + +   +       I V  V D + A  +LA A + +    IIAITGS GKT
Sbjct: 55  KDNGAIATLWSHPTI--QPPQGILVIPVKDTVKAFQQLARAYKEKLAPKIIAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   +TY   G++NN +GVPLT+   P D    I E+GM H GEI  L+ 
Sbjct: 113 TTKDMVDAVMAQKYQTYKTQGNHNNELGVPLTILHAPEDTQVLILEMGMDHAGEIEVLSR 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  P  A IT I  AH+ N    E IA AK EI  GL+K G   +  D+   +       
Sbjct: 173 LAEPDAAAITLIGEAHIENLGSREGIAKAKMEITAGLKKDGFFMIPVDEPLLDPFVPNLT 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   + G  +             E+S  +              +G +  +N L+ +
Sbjct: 233 QTIETFGLTEGDLQGD---------IVEESQDQTIFTVAGTTFTLPVLGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+        +   + L+ F   + R    +         ++ + YNANP +M   +   
Sbjct: 284 GLGRHFGVSNEAIKEGLAHFQLTKNR---TQWVTAGNGAAILSDIYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++    EGRRIAVL DM E+G  S   H  +A  L       V+L G  + AL+  L +
Sbjct: 341 RKLPL--EGRRIAVLADMLELGPDSAQMHEQMAAHLDDS-FQLVFLYGKEMQALQKRLAQ 397

Query: 421 ---SIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +  V Y  T +   L   ++ +L   D +V+K SN  G   +++ L 
Sbjct: 398 SPLADKVRYFATDEKPQLIASLKETLEPSDSLVIKGSNGMGLSEVVDALK 447


>gi|90407780|ref|ZP_01215958.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
 gi|90311140|gb|EAS39247.1| UDP-N-acetylmuramyl pentapeptide synthase [Psychromonas sp. CNPT3]
          Length = 474

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 131/481 (27%), Positives = 208/481 (43%), Gaps = 25/481 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ QA QG  +        ++ I+ D+R++A Q  F A+KG ++D H F+ +
Sbjct: 1   MIRL-TLEEIAQATQGKLLRTKDALLSIDAIATDTRNLAEQALFVALKGENFDAHLFLDN 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           A+  GA  ++V            I +  V D   AL  L+   R + K    IAITGS G
Sbjct: 60  AISTGAKALLVEQA-----SDHDIAMIVVTDTRLALGALSAYVRDKIKGLNCIAITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYA----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           KTT KE+L+  L    +  +      G++NN IGVPLTL R+  +  F + ELG +H GE
Sbjct: 115 KTTCKELLSAVLREHCQDDSALLATAGNFNNEIGVPLTLLRLTQNTRFAVLELGANHPGE 174

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +   LV+P +A+I  I  AHL  F  +  +AS+K EI+  L+  GT  +N D  F + 
Sbjct: 175 INYTAQLVQPKVALINNIMAAHLEGFGSLAGVASSKGEIWRHLQADGTAVVNLDADFSQT 234

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHM 292
             ++  A G            A+F     +  +  +                   +    
Sbjct: 235 YLSQLQAQGQCIFTFSQTLAQANFFADAIEFDAHGNANFILHVKTPICTGTQSISLKIPG 294

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+   L + S+  A   +            G   R        F T+ID++YNAN AS
Sbjct: 295 QHNVSNALAVASMAVALGCSLENVAKGLAQLPGVSGRVARIEVNDFLTIIDDTYNANSAS 354

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KAAI+VL   S      +  +L DM E+G  ++  H  + E  ++ N+  +   G H L
Sbjct: 355 VKAAINVLCATSTK----QALILSDMGELGTHTELEHQKVGEYAAMQNVPLLLAVGTHSL 410

Query: 413 ALKDALPRSIHV----HYSETMDGLFLFIQSSLVDG---DVVVVKSSNSCGFYRLINLLL 465
              +A            +      L  FI+  L        +++K S S     ++  + 
Sbjct: 411 HTVEAFNLHCKGQQKAQHFANKTQLKTFIKEYLDKNEQLTTMLIKGSRSAKMEEIVAFIT 470

Query: 466 E 466
           +
Sbjct: 471 K 471


>gi|42524585|ref|NP_969965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576795|emb|CAE78024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 473

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 201/468 (42%), Gaps = 14/468 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     +++      +    +    GI  D+R+    + F A+KG  +D H+F+  A
Sbjct: 1   MRAM-DLQTIVKVTGAKILSQK-ETNFAGIGTDTRAQLQGQLFIALKGEAFDAHNFLDKA 58

Query: 61  VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           V++GA  ++V   + +         +  V D L AL KL   AR  S A I+ ITGS GK
Sbjct: 59  VEQGASGLLVHEENALIEKLKDKATILLVPDTLKALQKLGNWARHESSARIVGITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE     + S    +   GS+NNH GVP TL ++P + D  I E+GM+H GEI  L 
Sbjct: 119 TTTKEFTAALVGSSMDVHYNKGSFNNHWGVPFTLLQLPPNKDVAIIEMGMNHAGEITELV 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKA 237
           H+  P + V T +  AH+  F  IE++A AK EI+E  G +      L+   +    +KA
Sbjct: 179 HIAEPDVVVCTMVGRAHMEFFGTIEKVAEAKEEIYEAAGDQTVRIYNLDNTQTHNMYVKA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +      + +    +   AD  L        +  ++  + G++        G     N++
Sbjct: 239 RDKFPKARILTFSSEDPRADVHLMISSMNMSEISIKGSIGGEAGTARVQVFGAQNLTNLM 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   +          L           R +    +    +I ++YNANP SMKA I
Sbjct: 299 AAASVGLAVGMTPAQVWAGLPACK---TNWGRNQLVHLKSGAQMIFDAYNANPDSMKALI 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +  ++    GR++ V G M E+G  S + H +L   +       V+  G    A    
Sbjct: 356 DNMKLLTV--PGRKVGVFGQMRELGSASANLHEELGTWVGQAGFDKVYFIGDDADAFAKG 413

Query: 418 LPRSIHVHYS----ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           L  + + + +    +  D     +   L  GD+ VVK+S      R +
Sbjct: 414 LSSAGYKNLALIEKDYKDSSGQDLAGFLKTGDIAVVKASRGTKLERFV 461


>gi|51246753|ref|YP_066637.1| putative bifunctional
            UDP-N-acetylmuramoylalanyl-D-glutamate--2,
            6-diaminopimelate
            ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
            ligase [Desulfotalea psychrophila LSv54]
 gi|50877790|emb|CAG37630.1| probable murein precusor biosynthesis bifunctional protein
            [Desulfotalea psychrophila LSv54]
          Length = 1014

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 127/481 (26%), Positives = 199/481 (41%), Gaps = 36/481 (7%)

Query: 5    WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            WT   L+ A  G  IG +    + G ++ DSRS+     F A++G ++DGH ++   V  
Sbjct: 542  WTPDKLVAATGGSLIGGMLTPLLLGEVTTDSRSVGRGSIFVALRGENHDGHAYLDQVVAA 601

Query: 64   GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----IIAITGSVGK 119
            GA  +VV      +   L+ P   V D   AL  +A A R     T    ++ ITGS GK
Sbjct: 602  GAACLVVEK----ARPDLTCPQVLVADTRRALGDMAAARRCAFAGTTKPVVVGITGSSGK 657

Query: 120  TTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            TT KEM    L+S+                G++NN IG+PL+L  +       + E+GM+
Sbjct: 658  TTIKEMTASILASLWPAGAEYPENVVLKTEGNFNNLIGLPLSLLPLDNMHRAAVLEMGMN 717

Query: 171  HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              GEI  L  + +P I  +  +  AHLS    IE +A AK E+F        + +N DD 
Sbjct: 718  SPGEIARLAEIAQPDICCVANVHAAHLSGLGSIEGVARAKEELFAHAPVDSILVVNLDDP 777

Query: 231  FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIG 289
                +            YS   + +AD            S      L  +S  V    +G
Sbjct: 778  HVVEMAKGYEQKK--ICYSLSAAGSADIWASDLSSGEAGSIDFNLHLGAESTSVQLDTLG 835

Query: 290  YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             H   N L   GI     A        L  +     R            +T+I + YNAN
Sbjct: 836  EHNVSNALAAAGIALAAGASPQQIALGLGSYKTPSKR---LERIRTSCNWTIISDCYNAN 892

Query: 350  PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            PASM A +  L+ ++   +   IA++GDM E+GE ++  H  +  +    ++ ++ + G 
Sbjct: 893  PASMSAGLRTLATVAGEKK---IAIVGDMLELGEFAEEAHRQIGSLAGELSLDYLLIVGE 949

Query: 410  HVLALKDAL----PRSIHVHYSETMDGLFLFIQSS-----LVDGDVVVVKSSNSCGFYRL 460
                L+ A          V    + + +  ++Q+      L + D+V +K S       L
Sbjct: 950  FASFLQQAALNSGMGKEQVLVFPSKEAIIDWLQAYQADGGLGEKDIVFIKGSRGMQLETL 1009

Query: 461  I 461
            I
Sbjct: 1010 I 1010



 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 137/481 (28%), Gaps = 71/481 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP-- 84
           V  ++ DSR +A    F A +G   DGH ++  A+ +G  +V+V    V+       P  
Sbjct: 40  VADVTADSRQVASGSLFIARRGGIQDGHAYVEDALLRGCPVVIVEAGSVSQNAYAHCPAL 99

Query: 85  VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D   A  K+          K +++ ITG+ GKTT   +L   L+ +      IG+
Sbjct: 100 VIEVADSQAAYGKILANYFANPAEKLSLVGITGTNGKTTISYLLEDMLTRLGHQVGVIGT 159

Query: 143 YNNHI--------------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            NN                       V   L RM       +  + +S     +     +
Sbjct: 160 VNNRFYRADGSQEIIATSLTTPDAKIVQQLLRRMADAGVDTVI-MEVSSHAISQARIGAL 218

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIA------SAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           R  +A+ T ++  HL     +E+         ++    +G+    +        F + L 
Sbjct: 219 RFDLAIFTNLSRDHLDYHLQMEDYFSAKLGLFSRYLKEDGIAVIPSDSRQLQTEFLQRLH 278

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQGKSMEVVHHGIGYHM 292
            +    G     S+G+   +D QL  ++    ++          Q    +    G     
Sbjct: 279 RQL--AGRNRFLSWGEEVGSDVQLHHYRVGLTETDCAVRLADCQQMLEFQSGLVGRFNID 336

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
               ++       ++              P                  +  + Y   P +
Sbjct: 337 NLLAVIAACRALAISGQDIAENIGRLQGAPGRVERVFATETPANAQPVVFVD-YAHTPDA 395

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +   +S L  +     G  IAV G     G         L   ++      V ++  +  
Sbjct: 396 LDKLLSTLGDVPH---GDLIAVFG----CGGDRDKGKRPLMGAVAARLADVVIVADDNPR 448

Query: 413 --------------------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                                      L +                            D+
Sbjct: 449 TEASEPILAEIVVGVAEQAMPLRNPDWLFERKANERGCVVVGDRRRAIDLAVHMACSKDI 508

Query: 447 V 447
           +
Sbjct: 509 I 509


>gi|226943449|ref|YP_002798522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
 gi|226718376|gb|ACO77547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Azotobacter
           vinelandii DJ]
          Length = 455

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 189/458 (41%), Gaps = 17/458 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +++   +QG   G       + +  DSR+I   + F A+ GP +DGH F+     KGA 
Sbjct: 7   LNEIAGPLQGALAGD--DVTFDSVGTDSRAIRSGQLFVALVGPRFDGHAFLAEVAAKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V      ++  L +P   V D   AL +L    R      + A+TGS GKTT KEML
Sbjct: 65  AALVQR----TMPELGLPQLQVADTRLALGRLGSLNRQAYSGPLAAVTGSSGKTTVKEML 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L RP +
Sbjct: 121 ASILRTRGPVLATRGNLNNDLGVPLTLLELAPEHVGAVIELGASRIGEIAYTVALTRPQV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT    AH+  F G E+I  AK EI EGL   G   LN DD  F++ + +  A G + 
Sbjct: 181 AIITNAGTAHVGEFGGPEKIVEAKGEILEGLPADGIAVLNRDDPAFDIWQRR--AAGRRV 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     + +ADF  R  +  +                +   +         +     +  
Sbjct: 239 LSFALDASDADFLARDIQPDARGCPAFTLRGPAGEARIQLNLLGRHNVANALAAASAAHA 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  I+A              + A       +ID+SYNANPASM         I   
Sbjct: 299 LGMPLVGIRAGLESLQPVKGRAVAQFA--PSGVRVIDDSYNANPASM----RAAIDILAG 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             GR +  LGDM E+G  ++  H  +    +   +  ++  G  +     A  +     +
Sbjct: 353 FSGRTLLALGDMGELGAWAEEGHRQVGAYAA-GKVDALYAVGPLMTHAVAAFGKGGR--H 409

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                GL   + S       +++K S S    ++++ L
Sbjct: 410 FADQAGLLEALCSEQHPDTTILIKGSRSAAMDKIVSAL 447


>gi|120437228|ref|YP_862914.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
 gi|117579378|emb|CAL67847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gramella forsetii KT0803]
          Length = 430

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 127/439 (28%), Positives = 202/439 (46%), Gaps = 22/439 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+  D+R+I     FFA+KG +++G++F   A+++GA  VVV+                
Sbjct: 14  SGVDTDTRNIRKDSMFFALKGTNFNGNEFAGEALKQGASYVVVDDKKFVKNKEH---YIL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL +L KLA+  R      I+AITGS GKTTTKE++   L    KT A  G+ NNHI
Sbjct: 71  VQNVLESLQKLAIFHRKYLGIPILAITGSNGKTTTKELVHSVLLRKFKTIATKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    +FGI E+G +H  EI FL  +  P    IT    AHL  F  +E + 
Sbjct: 131 GVPLTLLSMDDHTEFGIVEMGANHPLEIEFLCTIANPDYGYITNFGKAHLEGFGSLEGVV 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK E+++ L++   +     D   +              +SFG+S  AD Q        
Sbjct: 191 KAKTELYKNLQERHKLIFLNIDDEVQR-----KHENYNHTFSFGESNEADVQ-----LSY 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +      QL   + +      G + A+NM   L I        +    ALS + P     
Sbjct: 241 QSGLANAQLNYNNTDFKSKLTGEYNAKNMAAALCIGLYFKVKFEEIQTALSNYSP----D 296

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 LN    T+I ++YNANP SM AA+    Q+  + +   IA+LGDM E+G  + +
Sbjct: 297 NNRSQTLNTASNTIIMDAYNANPTSMHAALENFKQLKTNKQK--IAILGDMFELGSSAVT 354

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A  +   + +  +L G +          S  +   ++++ L   ++ +       
Sbjct: 355 EHQIIANYVQNSDFAETYLLGDNFKNTNT---SSNFIFKFKSIESLKEHLKETDFQNCYF 411

Query: 448 VVKSSNSCGFYRLINLLLE 466
           ++K S      R+++ + +
Sbjct: 412 LIKGSRGMALERVLDSIKK 430


>gi|302518531|ref|ZP_07270873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|318057550|ref|ZP_07976273.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actG]
 gi|318079767|ref|ZP_07987099.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. SA3_actF]
 gi|333027789|ref|ZP_08455853.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
 gi|302427426|gb|EFK99241.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces sp. SPB78]
 gi|332747641|gb|EGJ78082.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-alanyl ligase [Streptomyces sp. Tu6071]
          Length = 473

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 122/472 (25%), Positives = 197/472 (41%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P+  V G +  DSR++     F A  G   DGHD+  
Sbjct: 1   MIAL-SLAEIADIVGGRTHDIPDPELRVTGPVVTDSRAVEDGGLFVAFAGERVDGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                  G V      V +   L +P   VDDV  AL  LA     R    +IA+TGS G
Sbjct: 60  -------GAVAAGAVAVLATRPLGVPAIVVDDVTAALGALARTVVERLGTAVIAMTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   LS    T    G+ NN IG+PLT  R+  +    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQLLSRRGPTVWPPGNLNNEIGLPLTALRVTEETRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L ++G   LN DD     +  +
Sbjct: 173 TSLTPPSIGIVLNVGSAHIGEFGGKEKIAEAKGEMVEALPESGLAVLNADDPLVRGMAPR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +     FG++ +A+ +                L+  +         Y        
Sbjct: 233 TRARVLL----FGEADDAEVRAENVTLTDTG-RPRFLLRTPTGCGEVTLRLYGEHHVSNA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     AL +   +     R          T+++++YNA+P S++AA+ 
Sbjct: 288 LAAAAVAHELGMPAEEIALGLSEARSLSRWRMEVTERPDGVTIVNDAYNASPDSVRAALR 347

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
            L  +   +    GR  AVLG M E+G+ S + H  +  +    N+S +    G     L
Sbjct: 348 ALVAMGSAARDKGGRTWAVLGTMAELGDESLAAHDAVGRLAVRLNVSKLVAVGGQEAAWL 407

Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +              +          ++  L  GDVV+VK+S + G  ++  
Sbjct: 408 RMGAYNEGSWGEESVHVSDTQAAIDLLRGELRPGDVVLVKASRAAGLEKVAQ 459


>gi|153006718|ref|YP_001381043.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030291|gb|ABS28059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 127/468 (27%), Positives = 205/468 (43%), Gaps = 11/468 (2%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  P ++  +L  A  G  +G  P   + G+S D+R+I P   F A++G  +DGH ++  
Sbjct: 1   MTVPRFSPDELAAATGGRWMGAPP-AELAGVSTDTRTIVPGALFVALRGERFDGHAYLGE 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A                +     +PV  V D L AL  +A   R R    ++ +TGS GK
Sbjct: 60  ASA---KGAAAAVVAHGAAAGAPLPVLAVPDTLAALGAIARHHRRRFHIPVVGVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+EM+   L++        G+ NN +GVPLTL  +  +    + E+GM+H GEI  L 
Sbjct: 117 TTTREMIAGILATRGPVLKTEGNLNNEVGVPLTLLGLGPEHRSAVIEMGMNHPGEIARLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P++ V+T  A AHL     ++ +A AKAE+++GL+ TG +  N DD    +LK   
Sbjct: 177 AIAEPYVGVVTLAAAAHLEGLGTVDAVADAKAELYQGLQDTGIVVANADDP--RMLKRAQ 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A      ++ G  +  D  + +     +     V   G     VH          +   
Sbjct: 235 AAGKRMLTFAAGAGRRGDVVVLEIGSQGDDGLHFVLGVGNREVPVHIPGLVGAHNAVNAA 294

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + ++        A          G+R R         L+D+ YNANPASM AA+  
Sbjct: 295 AAAAAAISLGCSDREIAQ-GLAAVRPVGRRLRLERLASGLRLVDDCYNANPASMSAALRT 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDAL 418
           L  ++   + R +AVLGDM E+G   +  H +L    +   +  +   G       + A 
Sbjct: 354 LVDLA-RPDARAVAVLGDMLELGAFEEPAHRELGGEAARAGVRLLAAFGPRSRATAEAAR 412

Query: 419 PRSIHVHYSETMDGLFLFIQ-SSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +   +++ MD L  + + +     DV++VK S      RL+  L 
Sbjct: 413 AAGLETFHTDDMDALVRWARTALAPPSDVLLVKGSRGMKLERLVEALR 460


>gi|88808389|ref|ZP_01123899.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
 gi|88787377|gb|EAR18534.1| hypothetical protein WH7805_01827 [Synechococcus sp. WH 7805]
          Length = 471

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 115/466 (24%), Positives = 181/466 (38%), Gaps = 9/466 (1%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              L+Q          P+  ++     +  DSR++ P   F  ++G  +DGH F+ +AV+
Sbjct: 5   LSQLVQLWGQPLWAGGPRPDLSEALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLANAVE 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA    V  D   ++    +  + V+D L A  +LA   R +  A ++A+TGS GKTTT
Sbjct: 65  RGAQAAFVARDCAHAVPD-GLLHWRVEDTLLAYQQLATLHRRQLSAAVVAVTGSAGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++  AL+ +    A   + NN IGVPLTL     +    + E+GM   GEI  L+   
Sbjct: 124 RELIRSALAPLGDVQASDSNNNNDIGVPLTLLGAHREHAAVVVEMGMRGAGEIERLSRCA 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT I  AH+        IASAK EI   L   G + +   D+  E   ++    
Sbjct: 184 EPQIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPLGIVVIPAGDALLEDALSRCWTG 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I  +   G       ++      S        +     E              L     
Sbjct: 244 RILRVALDGDEPENGPEVSG--LTSGDLPTPDLVGHFLPEDQSLAFNGLRFHCPLEGRHN 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +  A +        +    +     N+          +    +   A+    Q
Sbjct: 302 ARNFMLALAVAQELKVSLQTIQALDVQVPGGRNRRLSLGGIALLDETYNASPEAVFAALQ 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPR 420
           +  H  GRR AVLG M E+G  S   H  +A+      +  + +   G    A++ A   
Sbjct: 362 LLAHQPGRRYAVLGTMLELGSRSVDLHRRVAQKAVDLQLDGLVVVAGGEEGEAMEVAAGS 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  ET +   L +   L  GD V++K+S      RLI  L  
Sbjct: 422 LSRFERVETPEQAALPLAEWLKPGDTVLLKASRGVALERLIPSLQN 467


>gi|330981221|gb|EGH79324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 456

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 209/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MLKPMTFSELVVPLDSRLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++
Sbjct: 175 SLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + T      + +        +         +     +  V  + +G H   N L  
Sbjct: 235 GNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +   ++  +  L+   P +GR       +      +ID++YNANPAS+ AA+ +
Sbjct: 294 AAASCAMGVPLEGIVTGLNNVQPVKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVSALYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVAAL 448


>gi|194364377|ref|YP_002026987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347181|gb|ACF50304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Stenotrophomonas maltophilia R551-3]
          Length = 464

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +   +     G   G      ++ +S D+R++ P   + A++G  +DGHDF   A  +
Sbjct: 5   LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRNLGPGSLYVALRGERFDGHDFAADAQAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V       +  + +P   V D   AL K+A   +      + AITGS GKT+ K
Sbjct: 61  GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRDTEVFAITGSNGKTSVK 115

Query: 124 EMLTIA-----LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            +L          + K  YA  G+ NN IG+PL +   P D D+ ++E+G    G+I +L
Sbjct: 116 SLLLSILQQVARHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP  A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +  
Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235

Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +  +G    AD   R  +  ++ S   +        VV    G H   N L
Sbjct: 236 FVGTPARCRVLRYGLEHTADVTARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +      ++      L+   P  GR   ++         L+D+SYNANP S+ AAI
Sbjct: 296 AAASLALAAGIELALVAAGLADAQPVPGRQIAHQL---HNGAVLVDDSYNANPGSLAAAI 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+     G      VLGDM E+G  +++ H           +  ++  G    A   A
Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGLRARAAGLKRLYALGPLSAAAATA 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +  T D L   ++  L  G   +VK S       ++  LL +
Sbjct: 409 FGEGGR--HFATHDALSQALKDELHAGVRCLVKGSRGSAMDTIVKALLAQ 456


>gi|213852462|ref|ZP_03381994.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
          Length = 423

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 201/443 (45%), Gaps = 20/443 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400

Query: 421 SIHVHYSETMDGLFLFIQSSLVD 443
           S    +      L   + + L +
Sbjct: 401 SGVGEHFADKAALIARLHALLQE 423


>gi|330877137|gb|EGH11286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 456

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 210/465 (45%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L   +    +G       +G+S DSR I P + F A+ GP +DGH+++   
Sbjct: 1   MIKPMTFSELTVPLDARLVGG--DCSFDGVSTDSRGIVPGQLFVALTGPRFDGHEYLDQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGK 119
             KGA   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GK
Sbjct: 59  AAKGAVGALVEREVEGA----ALPQLVVLDTRKALAQLGAMNRNGFVDRPVAAVTGSSGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +  
Sbjct: 115 TTVKEMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTAAVIELGASRVGEIAYTV 174

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +PH+ +IT    AH+  F G + I  AK EI EG+E +GT  LN +D  F + + ++
Sbjct: 175 SLTKPHVVIITNAGTAHVGEFGGPDRIVEAKGEILEGVEASGTAVLNLEDKAFPIWRKRA 234

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I T      + +        +         +     +++V  + +G H   N L  
Sbjct: 235 GHRNILTFALADAAADFYASELS-RDARGCPSFTMDSPLGNVQVQLNLLGTHNVTNALAA 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L   ++  +  L+   P +GR       +      +ID++YNANP S+ AA+ +
Sbjct: 294 AAAACALGVSLEGIVAGLNNVQPVKGRAVAQ---IASNGVRVIDDTYNANPGSINAAVDI 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +     A  
Sbjct: 351 LTGFT----GRTVLVLGDIGELGEWAEQGHHDVGAYAA-GKVSAMYAVGPLMTHAVSAF- 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H ++  +   L   + +       +++K S S     ++  L
Sbjct: 405 -GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 448


>gi|270263955|ref|ZP_06192223.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
 gi|270042148|gb|EFA15244.1| hypothetical protein SOD_f01690 [Serratia odorifera 4Rx13]
          Length = 453

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 205/471 (43%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L   +    IG      +  ++ D+R +     F A+KG  +       HA
Sbjct: 1   MIPV-SLQALADVLSAELIG--ADCQIIEVTTDTRQVTAGCLFVALKGERF-----DAHA 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    + +P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 53  FAADAVAAGAGALLVSKRLLVDVPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T 
Sbjct: 113 SVKEMAAAILRECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++  +
Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFTGLPADGVAIINADNNDWPHWQSMLN 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S   ++  DF        ++ +   +     +  +     G H   N L   
Sbjct: 233 DKTVWR-FSPQAAEGVDFFASDVLVNAKGTQFTLHSPFGTATIALPLPGRHNVANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A ++   + L       GR        N     L+D+SYNAN  SM AA  VL
Sbjct: 292 ALAMSVGASLEAVRQGLKQLQGVPGRLFPIALTEN---KLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  ++  H  + E   L  I  V   G    AL  A   
Sbjct: 349 AEMP----GYRVMVVGDMAELGADAEECHRQVGEAARLAGIDKVIGIGPLSQALCAA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
           S    + +    +   +   L +  V  V++K S S    +++  L E+ P
Sbjct: 402 SGSGEHFQDKAAVIARVAELLSEHAVITVLIKGSRSAAMEQVVRALQEKAP 452


>gi|158335995|ref|YP_001517169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
 gi|158306236|gb|ABW27853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acaryochloris marina MBIC11017]
          Length = 448

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 138/471 (29%), Positives = 209/471 (44%), Gaps = 31/471 (6%)

Query: 1   MN---PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    PL    ++L A   H  G +    V G++ D+RS+ PQE F A  G ++DGH F 
Sbjct: 1   MTLQAPLAQLIEILAAQPLHIPGALTSQQVQGVNTDTRSLKPQEIFLAFSGENFDGHRFA 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             AVQ+GA   +V+  + A+      P   V D L A  +L    R + +  IIAITGSV
Sbjct: 61  ESAVQQGAIAAIVDHPIDAAT-----PQLVVPDTLVAYQRLGQWWRQQFQIPIIAITGSV 115

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE+++  L +         +YNN IGVP TL  +  D D+ + E+GM   GEI  
Sbjct: 116 GKTTTKELISAVLGTAGSVLKTEANYNNEIGVPKTLLGLTADHDYAVVEMGMRGPGEIAE 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+ + +P I VIT +  AH+      E IA AK E+   +       LN D+    LL  
Sbjct: 176 LSQIAQPTIGVITNVGTAHIGRLGSREAIAQAKCELLAQMPAESLAVLNADN---SLLIE 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  +      ++G                +    +  LQ           G H A N L
Sbjct: 233 TAQTVWSGAQVTYGL----------DSGDLQGQLADQTLQVADHSFPLPLPGAHNALNYL 282

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I   L  D+    + +S+  P        R         ++DE+YNA   SM+AA+
Sbjct: 283 AALAIAQHLHLDLAPLQQGISLELPSGRA----RKLTLPNDVVVLDETYNAGLESMQAAL 338

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
            +L+Q        RIAVLG M E+GE +   H  +  ++   NI  + +   G    AL 
Sbjct: 339 HLLAQTPGER---RIAVLGPMKELGEYAAELHRQVGRLVQTLNIDQLLILDQGPEGTALA 395

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++          L  ++   +  GD ++ K+S+S G  R+++   +
Sbjct: 396 AG-TTTVPTEQFAEHQALMDYLDQHIQPGDRLLCKASHSVGLDRIVDHFTQ 445


>gi|261414979|ref|YP_003248662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371435|gb|ACX74180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328164|gb|ADL27365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 461

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 137/477 (28%), Positives = 214/477 (44%), Gaps = 22/477 (4%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L  T  ++L+ ++  ++G+  +     +   +DSR  A    F+ IKG  +D H F+
Sbjct: 1   MLKLDLTIGEMLEILETEAVGVPARTLKRKVNLCMDSRESAKGVVFWPIKGARFDAHQFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               + GA + VVN   +     +  P   V+D   AL KLA   +   K   +AITGS 
Sbjct: 61  SQMEKDGALMSVVNQTAIDPNFKMYAP---VEDTTKALLKLAKGYQRLFKLKKVAITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM    LS    T+A  G++NNHIGVP+TL ++    +  + E+G S   EIR 
Sbjct: 118 GKTTTKEMTKAVLSMKYNTHATKGNFNNHIGVPMTLFQLKHSHEAAVVEMGTSGPDEIRP 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L+    P IAVIT I  +HL     ++ + + K  I  GL++ GT+ +N DD     +KA
Sbjct: 178 LSLATEPDIAVITNIGASHLERLGDLDGVFNEKINITAGLKENGTLIVNADDERLCKVKA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             H   +      G  K    +  +         +           V +  G H   + L
Sbjct: 238 TKHYKVVTFGVRRGVVKPEKLKWTEN--------LCADFYVGRTHFVLNVPGDHNLYDAL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L        KAL+ F     R        N   F +I + YNANP+S K A+
Sbjct: 290 AAIAVGQALRIPKGDIAKALAGFTSTSMRM----EIKNANGFKVISDCYNANPSSTKMAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L  +    EG+RIAVLGDM E+G+ S + H  +  ++   N   +   G       + 
Sbjct: 346 QTLGNMRV--EGKRIAVLGDMLELGKESGNLHKQIGALVPEMNFDMLLAVGKDAKKYVEG 403

Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
                  +V Y ET+  +   +   + +GD+++VK S      +++  LL   P  +
Sbjct: 404 AKSRGMKNVQYFETVPEVISMLGEVVAEGDILLVKGSRGMHMEQVVEALLHMVPVFK 460


>gi|312890789|ref|ZP_07750319.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311296752|gb|EFQ73891.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 433

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 114/434 (26%), Positives = 183/434 (42%), Gaps = 17/434 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA+KG  +D + F   A+  GA   V++        ++S     VD
Sbjct: 16  ISTDTRKIIPGSIFFALKGDKFDANTFAQQALDAGAAYAVIDNGDY----NVSQKCILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +     + +TGS GKTTTKE++   LS    TYA  G+ NNHIGV
Sbjct: 72  DVLSCLQNLARYHRKQLNIPFVGLTGSNGKTTTKELIRAVLSQHFNTYATYGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +   V+  + E+G +H  EI  L  + +P   +IT +  AHL  F G E +   
Sbjct: 132 PLTILAIDQTVEMAVIEMGANHQKEIELLCSIAQPTHGLITNVGKAHLEGFGGAEGVKKG 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+ +  +     +   ++L        +  +  +G     +      +     
Sbjct: 192 KGELYDYLKTSKGVIF--VNQDSKVLTDMVAERALTDVQYYGSDIGNNISGELLENSPYL 249

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        V     G +   N+L  + I        D     LS + P       
Sbjct: 250 KLRWKIKNEAYHTVQSQLTGAYNMDNLLAAICIGHYFKLSPDEINTGLSGYQP----HNN 305

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               +     TLI + YNANP+SM  AI  + ++     GR++ +LGDM E+GE S   H
Sbjct: 306 RSQIVKTASNTLICDYYNANPSSMFVAIENIGKLPA---GRKVVILGDMFELGEESAVEH 362

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + +      I      G       +     ++  +  +++      +S  V    +++
Sbjct: 363 ESVIQKAMQTAIDERIFIGAEFYKQSEL----VNATFYRSVEDAIGAFKSRPVKNATILI 418

Query: 450 KSSNSCGFYRLINL 463
           K S      RL++L
Sbjct: 419 KGSRGMALERLVDL 432


>gi|323137897|ref|ZP_08072972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
 gi|322396900|gb|EFX99426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylocystis sp. ATCC 49242]
          Length = 475

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 187/466 (40%), Positives = 261/466 (56%), Gaps = 4/466 (0%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLW+   L+ A+     G +      G+SID+R++   + FFAIKG   DGH+F+  A +
Sbjct: 5   PLWSGLALVGALHARVSGALA-REATGVSIDTRTLKAGDLFFAIKGEARDGHEFVRAAFE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   V++    A       P+  V DV  +L  L   AR RS A I AITGSVGKT+T
Sbjct: 64  KGAAAAVIDEAHAAEFSGAG-PLLIVKDVQRSLEMLGKRARERSSAFIAAITGSVGKTST 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M  + LS   +T+A + SYNN  GVPLTLARMP    FG+FELGM+H GEI  L   V
Sbjct: 123 KDMTRLMLSRFGETHASVASYNNQWGVPLTLARMPAASRFGVFELGMNHAGEITGLVAQV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RPH+AV+T +A  HL +F+ +E IA AKAEIF  L+    I    D ++  L  A +   
Sbjct: 183 RPHVAVVTRVAAVHLEHFASVEGIADAKAEIFSALDGGVAIINRDDATYERLAAAAAPTA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   I+SFG+S+ A+ +L  +K   +   +E  + GK +       G H+A N L  L I
Sbjct: 243 G--HIFSFGESEGAEARLLSYKGIDDGCEVEADILGKRLAYRIGAPGKHIALNSLAALLI 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++   DV+ A   L+ F P  GRG R +     G FTLIDESYNANP SM++A  +L  
Sbjct: 301 AAVFDIDVEKAALTLADFTPPSGRGAREKLMAPSGPFTLIDESYNANPTSMRSAFELLGA 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P   GRRIAVLGDM E+G      H +LA  L+      ++ +G  + +L  A P ++
Sbjct: 361 TTPGAGGRRIAVLGDMLELGPCGAELHGELAVDLARAKCDLLFTAGPLMASLYYAAPNAM 420

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              +  T   L   + ++L  GDVV+VK SNS    R++  + ++F
Sbjct: 421 RAAHRRTALELEEAVLAALRAGDVVMVKGSNSSRMSRIVAAVRQKF 466


>gi|256545630|ref|ZP_05472988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398707|gb|EEU12326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus vaginalis ATCC 51170]
          Length = 459

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 192/463 (41%), Gaps = 17/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++ + + G        +  + GISIDSR+I     +  I G  +DG  FI      G
Sbjct: 5   NLEEIAKMLGGEISNPKYSKTKIKGISIDSRTIKKDNLYIPIVGEKFDGRIFIEECENSG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +++ +      S+SIP   V D   AL  LA A R      IIAITGS GKTT+K 
Sbjct: 65  AVAFLID-ENYKIPKSISIPFVKVSDTKKALQDLARAYRDELDIKIIAITGSNGKTTSKN 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   LS   K     G+ NN IGVPLTL         G+ E+G    GEI  LT++ +P
Sbjct: 124 LIHSVLSEKYKVEKTQGNLNNEIGVPLTLLDFSDKTQIGVVEMGTEDFGEISLLTNIAKP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AHL      E IA AK EI EGL+  GT   N DD   + +         
Sbjct: 184 DMAMITNIGDAHLLKLKSREGIAKAKLEILEGLKADGTFIYNGDDEILKKVLPSYTIK-- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +   S+GK    +F+        E S    +   ++ +     +G H   N  + + I  
Sbjct: 242 QKTISYGKEDGVNFK----VYPKEFSSTYTKFSYENEDYKVPLLGTHQVYNGALAVLIGK 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     +     L+       R +            ++D++Y +NP S+K  + +   + 
Sbjct: 298 LFNLSYEEIDNGLAKVSNNANRNELIERNGFD----ILDDAYKSNPQSLKQGLELAGFLD 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            +     I VLGDM E+G+  ++ H      +    I++    G     +  A   +   
Sbjct: 354 GYLNK--IVVLGDMLELGDGEKNLHYKSGLDIKPKKINYCLFYGPLCKEMYKASLENFPE 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 412 NRSFYFENKNDLIDKLKFLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|29832660|ref|NP_827294.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
 gi|29609780|dbj|BAC73829.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase
           [Streptomyces avermitilis MA-4680]
          Length = 471

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/473 (25%), Positives = 188/473 (39%), Gaps = 19/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR +     F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAVVGGQTYDIPDPAVQVTGPVVRDSREVESGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  -------AVVEAGAVAVLASRPVGVPAIVVDDVQTALGALARHVVERLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L S   T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLRSKAPTVFTPGSLNNEIGLPLTALSATEETKFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L  P + ++  +  AH+  F G E+IA AK E+ EGL            +  + L   
Sbjct: 173 ADLTPPKVGLVLNVGTAHIGEFGGREQIAQAKGELVEGLPPAEDG-GAAILNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG+S  AD +    +  +                V   +          
Sbjct: 232 MASRTKARVILFGESDEADVRAENVRLTAGGQPSFSLHTPSGCSDVTMRLY-GEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 291 LAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
            L+  +     R  AVLG M E+G+ + + H  +  +    N+  +    G     L   
Sbjct: 351 ALA--AMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 408

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +         +          ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 409 AYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLESVAQALLE 461


>gi|94676780|ref|YP_588952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94219930|gb|ABF14089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 453

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 140/469 (29%), Positives = 217/469 (46%), Gaps = 21/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P    HD++  ++    GI P   +  ++ DSR+I     F A+ G  +D H F  +A
Sbjct: 1   MIPFM-LHDIITILRAKVYGINP--MIEDVTTDSRTIGKNCLFIALHGTRFDAHFFAKNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++VN  +      L+IP   V+D L AL +L+   R +  A +IA+TGS GKT
Sbjct: 58  VLAGASAILVNRQL-----PLNIPQLIVEDTLLALKQLSYWVRKQVSARVIALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    K  A  G+ NN IGV LTL R+    DF I ELG +H+GEI    +
Sbjct: 113 SVKEMTASILRQCGKVLATQGNLNNDIGVSLTLLRLTPQDDFAIIELGANHIGEISSNAN 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P IA++  I+ +HL+ F  +  +A AK EIF  L   G + LN + + +     +  
Sbjct: 173 LVLPEIALVNNISFSHLAGFGSLAGVAQAKGEIFTKLPGNGLVILNENSNDWLNW-QQGS 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  K+ N  F   K        +  +     S +V    +G H   N L   
Sbjct: 232 KCKTVWRFSLNKTDNVQFFATKIVSNLHSMYFTLHSPQGSCQVQLPMLGKHNITNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A++      LS   P  GR    +  +      LID+SYNAN  SM AA  VL
Sbjct: 292 ALAIAVGANLSAVSLGLSKVKPIPGRLCPIQLDVG---KLLIDDSYNANVNSMIAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G  + V+GDM E+GE    +H  + + +++  I+ V   G     + +    
Sbjct: 349 SEMP----GYLVMVVGDMAELGEKEIKYHQQVGKFIAMVGINKVLSIGNLSYIISN---T 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEE 467
           S    +      L   +   L+  ++  ++VK S +    ++I  L E+
Sbjct: 402 SRRGEHFNNKSALTNRLIQLLLKYNIITILVKGSRNTTMEQVIQELKEK 450


>gi|255529994|ref|YP_003090366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
 gi|255342978|gb|ACU02304.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Pedobacter
           heparinus DSM 2366]
          Length = 433

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 201/435 (46%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R+I P   FFA+KG  +D + F   A++ GA   +++ +        +     V 
Sbjct: 17  VCTDTRNIVPGCLFFALKGEKFDANTFAEEALKLGAAYSIIDNEAY----QTNERCLLVS 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  LA   R +    ++ +TGS GKTTTKE++   LS   KT+A  G+ NNHIGV
Sbjct: 73  DVLTALQDLARHHRSQLHIPVVGLTGSNGKTTTKELINAVLSRKYKTFATRGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +  +++  + E+G +H  EI FL  + +P   +IT I  AHL  F G E +   
Sbjct: 133 PLSILSLGPEIEMAVIEMGANHQKEIEFLCGIAQPTHGLITNIGMAHLDGFGGFEGVKKG 192

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KAE+F  L++         ++    L   S    +  +  +G   +     +  K     
Sbjct: 193 KAELFAYLKQHSGFAFINRNN--PYLLEMSEKAQLSKVVYYGTESSNTVAGKLLKTDP-F 249

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +  Q +     +  +  G +  +N+L  + I              LS + P   R + 
Sbjct: 250 IELSWQSKAGEFYIALNLTGAYNFENILAAVCIGQFFEVSPVEINAGLSGYFPNNNRSQL 309

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    T+I + YNANP+SM AA++ +  +    +     ++GDM E+GE S   H
Sbjct: 310 TKTASN----TVICDFYNANPSSMAAALTNIELLKGSNK---TVIIGDMFELGEESAKQH 362

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++ E     +I+ +   G H    K     +   H+  T      F++++ +   ++++
Sbjct: 363 LNIIEQAEKLDIATLIFIGKHFYHAKQ----NHKGHFFATPAEAAAFLKTNPLKNALILL 418

Query: 450 KSSNSCGFYRLINLL 464
           K S      +L+ LL
Sbjct: 419 KGSRGMALEQLMPLL 433


>gi|119469210|ref|ZP_01612194.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
 gi|119447462|gb|EAW28730.1| D-alanine:D-alanine-adding enzyme [Alteromonadales bacterium TW-7]
          Length = 457

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 145/448 (32%), Positives = 214/448 (47%), Gaps = 21/448 (4%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V  I+ D+R++   E F A+KGP++DGH FI  A QKGA  V+V+  +      + 
Sbjct: 17  DNQQVLNINTDTRTVCEGEVFLALKGPNFDGHKFIAEAKQKGAIGVIVDHKV-----DVD 71

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           I  F V+D   AL  +  A   +     IAITGSVGKTT KEM    LS      A  G+
Sbjct: 72  IAQFIVNDTRIALGAIGTAVMAQVAPKTIAITGSVGKTTVKEMCAAILSVHGDVLATKGN 131

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NN IGVPLTL R+     F + ELG +HLGEI + T + +P +AV+  +APAHL  F  
Sbjct: 132 FNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTAMAKPDVAVVCNVAPAHLEGFGS 191

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +  +A AK EIF+GL++ G   +N D  F +    K     IK    F  S+  D     
Sbjct: 192 LMGVAKAKGEIFDGLKENGVAIINCDSEFSQYWLDKLEGRNIKR---FSTSEKLDIWAED 248

Query: 263 WKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
               +  ++   +  + K + V     G H   N L+   + S L   +D    AL+   
Sbjct: 249 ISLDANARASFTLCTKQKKVPVTLALPGKHNISNALIAAALTSELDVTLDDIAHALATMG 308

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +GR      +      T++D++YNAN  S+KAAI +LS +    +G RI  LGDM E+
Sbjct: 309 DVKGRVNLIEVS---DMLTVVDDTYNANVKSVKAAIDLLSDM----QGHRILALGDMGEL 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ--- 438
           GE ++ +H ++ E      I  ++  G       D    +    +    D +   IQ   
Sbjct: 362 GEDARKYHQEVGEYALEKGIDELFTLGVLSKCASDVFALANR--HFSNRDQMQQQIQATI 419

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +     +VVK S S     L+  L+ 
Sbjct: 420 NQVNKKTTIVVKGSRSSRMELLVTDLVN 447


>gi|78065117|ref|YP_367886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
 gi|77965862|gb|ABB07242.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. 383]
          Length = 468

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 111/474 (23%), Positives = 192/474 (40%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++        + +S DSR+  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTAGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V          +++P     +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  AARGASAALVAH----VPAGVTMPAIEGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEI 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +      + V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAGRQNDAQVTGRLHGGELAIDTPAGVVTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  +         T++D++YNANP SM+AA
Sbjct: 293 AATAAALGAGVALSAIKQGLESFEPVKGRLQVKQAIAGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    +   +  L   + ++         ++VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFGDVGALVEALLAAGYGAQA--TLLVKGSRYMKMERVVDALTNQ 458


>gi|15642402|ref|NP_232035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121587634|ref|ZP_01677398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|153818405|ref|ZP_01971072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|153822244|ref|ZP_01974911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227082528|ref|YP_002811079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229507533|ref|ZP_04397038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229512271|ref|ZP_04401750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229519407|ref|ZP_04408850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229607039|ref|YP_002877687.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254849527|ref|ZP_05238877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255746922|ref|ZP_05420867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262161535|ref|ZP_06030645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|298500235|ref|ZP_07010040.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656978|gb|AAF95548.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|121548144|gb|EAX58217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 2740-80]
 gi|126511038|gb|EAZ73632.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae NCTC 8457]
 gi|126520254|gb|EAZ77477.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae B33]
 gi|227010416|gb|ACP06628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae M66-2]
 gi|229344096|gb|EEO09071.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC9]
 gi|229352236|gb|EEO17177.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae B33]
 gi|229355038|gb|EEO19959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae BX 330286]
 gi|229369694|gb|ACQ60117.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae MJ-1236]
 gi|254845232|gb|EET23646.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           cholerae MO10]
 gi|255735324|gb|EET90724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholera CIRS 101]
 gi|262028846|gb|EEY47500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae INDRE 91/1]
 gi|297540928|gb|EFH76982.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 453

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|237654088|ref|YP_002890402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
 gi|237625335|gb|ACR02025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thauera sp.
           MZ1T]
          Length = 470

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 127/469 (27%), Positives = 200/469 (42%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + + HD  +A+  H      +G  + +  D+R++AP + F A++G  +DGHDF+  A + 
Sbjct: 1   MMSLHDATRALACHGARATGEGRFDSVGTDTRALAPGQLFVALRGERFDGHDFVADAAKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+    A      +P+  VDD   AL  LA A R R    +I +TGS GKTT K
Sbjct: 61  GAAAAMVDAAWSAGKADAGLPLLVVDDTRRALGTLAAAWRARFALPLIGVTGSNGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSY--------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM    L                     NN IG+PLTL  +       + E+GM+H GEI
Sbjct: 121 EMCAAILRVQASRDGFGEESVLATRGNLNNDIGMPLTLLELRDFHRAAVIEMGMNHPGEI 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L+ L +P +A++     AHL     ++E+A  K  I+EGL   G   +N DD      
Sbjct: 181 GYLSALAQPTVALVNNAQRAHLQGMGSVDEVAREKGAIYEGLGGAGVAVINADDPHAGYW 240

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++ +    I    +FG    AD   R        S +E+ +    ++      G H  +N
Sbjct: 241 RSLNAGRPI---VTFGIDHPADVSAR-CTLRGLGSRLELDIPQGKIDFALQVPGLHNVRN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L            ++   + L+ F    GR    +         ++D+SYNANP S++ 
Sbjct: 297 ALGAAAACLAAGVPLEAVAEGLAGFAGTRGR---LQRRSGPRGALILDDSYNANPDSVRV 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+ +     G    VLGDM E+GE S   H ++        I  ++  G       
Sbjct: 354 GIDVLAAMP----GHTWLVLGDMGEVGETSAQVHDEVGGYAKSKGIDGLFALGEMSAVAA 409

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +  +++ L   +   L    VV+VK S      R+ + L
Sbjct: 410 HNFGEGAR--HFTSVEALVKALVPRLDADSVVLVKGSRFMRMERVADAL 456


>gi|56752262|ref|YP_172963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687221|dbj|BAD80443.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 6301]
          Length = 455

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 24/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   ++   +   +      +G         ++ DSR I P + F A++G  +DGHDF+ 
Sbjct: 1   MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +V+ D        +  +  VD+ L A  ++A   R R    +I ITGSVG
Sbjct: 61  QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177
           KTTTKE++   L+          +YNN IGVP T+ ++  D  +  + E+GM   G+I  
Sbjct: 121 KTTTKELIAAMLAVRGPVLKPEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P+IAVIT +  AH+      + IA AK E+   L  TG   LN D+     L A
Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  L +    ++G                 Q      L  +         G H A N L
Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I   L  D +                 R R         L+DE+YNA   SM   +
Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESM---L 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
           + L  ++     RRIAVLG M E+G+ S+++H  + E  +   +  + +       A   
Sbjct: 341 AALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           A   +I        + L   ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|257063605|ref|YP_003143277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
 gi|256791258|gb|ACV21928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           heliotrinireducens DSM 20476]
          Length = 458

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 192/445 (43%), Gaps = 11/445 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSI 83
            G+S DSR++ P   + A+ G   DGHDF+  A   GA L +V+ D+  S          
Sbjct: 13  TGLSWDSRTVQPGYVYAALPGQRVDGHDFLPQAFSAGAALALVSRDLTESESEAARAAHA 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDDV  A++ LA A R   KA I+ +TGSVGKTTT+ ++   L+S  +     G++
Sbjct: 73  AVVKVDDVARAISDLAAAWRDVLKAEIVGVTGSVGKTTTRSLIYGVLASAFEADCTKGNF 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN +G+P TL +     +  + E+GM  LG+I  L  + RP   VIT +  +HL      
Sbjct: 133 NNELGMPYTLLQTEPSCEVLVLEMGMDGLGQIADLARIARPKYGVITNVGVSHLERLGTR 192

Query: 204 EEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           + IA AKAE+ EG  +  G  FL  D  + + +   + A+              +  +  
Sbjct: 193 DNIARAKAEMVEGLPDGEGVAFLQADGEYTDFIIEHARAVERGIRIVRFDGTAENSDVYA 252

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                +             E     +      N+       ++         +  +    
Sbjct: 253 TDIAVDDQGRPSFTLNARGESASCTLSVRGVHNVTNACAAAAVGLEFGIALDQVAAALSG 312

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R     +   F + D++YNA+P SM AA++VL+  S    GRRIAVLGDM E+G
Sbjct: 313 VEPESGRQALKRSSRGFLVFDDAYNASPESMAAALNVLASFSAS--GRRIAVLGDMGELG 370

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQ 438
                 HI+  +  +   I  +   G     + DA  +       V      D     + 
Sbjct: 371 SAEVEGHINTGKAAAQAGIDMLVCVGAMSRYIADAARKGGMAVKSVIEVADADAAATTVL 430

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINL 463
                GDVV+VK+S+  G  R++  
Sbjct: 431 DIAQPGDVVLVKASHFMGLDRVVER 455


>gi|308177863|ref|YP_003917269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
 gi|307745326|emb|CBT76298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter arilaitensis Re117]
          Length = 485

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 201/470 (42%), Gaps = 15/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  DLL+   G +         +  ++ DSR + P   + A  G   DGH FI  
Sbjct: 1   MIEL-SLTDLLEITGGKATATVAADTVITSVATDSREVLPGALYVAKPGEFSDGHTFIDG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITG 115
           A   GA L +    +         P   V+D + A+ K+A       + ++ A ++ ITG
Sbjct: 60  ARAAGAVLSLAER-ITHDEERREHPAIIVEDAVDAMGKIAAHIVSHLKAKNDAKVVGITG 118

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTK++L   LS    T + IGSYN  +GVPLT+     +  + + E+G + +G +
Sbjct: 119 SAGKTTTKDLLAGILSQAAPTVSPIGSYNGEVGVPLTVFSATEETKYFVIEMGATGIGHL 178

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT +V PH+ V+  +  AH   F G+E I  AK E+ E L+  G   LN +D     +
Sbjct: 179 NYLTDMVHPHVGVVLCVGTAHAGEFGGVENIEKAKGELVEALDTEGIAILNAEDPRVARM 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           ++++ +          K +NA          +E                           
Sbjct: 239 ESRARSQVRFFGTGAVKPENAGVWASDVVVNAEGQPELTLEFPNGYSKRITSGLLGRHHV 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +     + L  D+D  + A  +     G   R          ++I+++YNANP SM+A
Sbjct: 299 SNILAAANAALALDIDPELIAAGLEGRAAGSRWRMERLERADGVSIINDAYNANPESMRA 358

Query: 356 AISVLSQISPHGEG----RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           A+  L+++    +G    R  AVLG+M E+G+ S   H  L  +    NI  + + G   
Sbjct: 359 ALVTLAELGLGADGAPGRRTWAVLGEMLELGDESIHQHDLLGRMAVRMNIKKLVVVGRGA 418

Query: 412 LALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               ++           +Y E ++     ++  L  GD+ + KSSN  G 
Sbjct: 419 KPAYNSAVLEGSWGDEAYYVEDVEEARALLEEQLQPGDIALFKSSNGAGL 468


>gi|81300650|ref|YP_400858.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
 gi|81169531|gb|ABB57871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 24/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   ++   +   +      +G         ++ DSR I P + F A++G  +DGHDF+ 
Sbjct: 1   MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +V+ D        +  +  VD+ L A  ++A   R R    +I ITGSVG
Sbjct: 61  QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177
           KTTTKE++   L+          +YNN IGVP T+ ++  D  +  + E+GM   G+I  
Sbjct: 121 KTTTKELIAAMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P+IAVIT +  AH+      + IA AK E+   L  TG   LN D+     L A
Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  L +    ++G                 Q      L  +         G H A N L
Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I   L  D +                 R R         L+DE+YNA   SM   +
Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESM---L 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
           + L  ++     RRIAVLG M E+G+ S+++H  + E  +   +  + +       A   
Sbjct: 341 AALQLLADTPGQRRIAVLGTMKELGDFSETYHRQVGEKAAALGLDRLLIYADPTEAAAMQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           A   +I        + L   ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|115524116|ref|YP_781027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518063|gb|ABJ06047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 480

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 193/467 (41%), Positives = 260/467 (55%), Gaps = 3/467 (0%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LWT   +  A++    G        G+SIDSR++ P +A+FAIKG  +DGH F+  A++ 
Sbjct: 6   LWTLDAMASAMRAERSGAPSDVVF-GLSIDSRTLTPGDAYFAIKGEAHDGHAFVAAALEA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + VV  +      +    +  VDDVL AL  LA AAR R +  +IA+TGSVGKT+TK
Sbjct: 65  GAAVAVVAREQRDQFAA-DARLLIVDDVLEALRDLARAARARLEGQVIAVTGSVGKTSTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L    ++  +T+A + S+NNH GVPL+LAR P    F +FE+GM+H GEI  L  LVR
Sbjct: 124 EALRAVFAAQGETHASVASFNNHWGVPLSLARCPASARFAVFEIGMNHAGEIEPLVGLVR 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+ITT+ P HL  F GIE IA AKAEIF GLE  G + LN D++ F  L   + A G
Sbjct: 184 PHVAIITTVEPVHLEFFDGIEAIADAKAEIFAGLESGGAVVLNRDNAQFTRLAECAEARG 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           IK I SFG    AD +L       + S +  ++ G+++       G H A N L  L   
Sbjct: 244 IKRIVSFGADGRADAKLIDIALQPDCSAIRAEIGGQTVTYKLGMPGRHQAINSLAVLAAA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +  AD+  A   LS   P  GRG R R    + G  TLIDESYNANPASM AA++VL  
Sbjct: 304 ELAGADLALAALTLSQVVPAAGRGVRKRLEISHSGEATLIDESYNANPASMAAALNVLGG 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +P  +GRRIAVLGDM E+G  S   H  L   +    I  V+  G  +  L DAL    
Sbjct: 364 AAPGPQGRRIAVLGDMLELGPRSAELHAGLNAAVKANAIDTVFCCGPMMRHLWDALSTGK 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              Y+E    L   +  ++  GDV++VK S       +++ L + +P
Sbjct: 424 RGGYAENSAALESHVVGAVRAGDVIMVKGSLGSRMKTIVSALEKRYP 470


>gi|332666718|ref|YP_004449506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335532|gb|AEE52633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 434

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 198/433 (45%), Gaps = 16/433 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR I P   FFA++G +++G+ +   A+++GA   VV+   +A+          VD
Sbjct: 16  VSTDSRKIEPGCIFFALRGDNFNGNQYAQSALEQGASYAVVDDPALATQD----RCIVVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    IIAITGS GKTTTKE++   L S    +   G+ NNHIGV
Sbjct: 72  DVLDTLQALAKFHRRQLHIPIIAITGSNGKTTTKELIAAVLGSQYPMHYTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++   ++  + E+G +H GEI  L  +  P   +IT I  AHL  F GIE +   
Sbjct: 132 PLTLLQLDFRLEVAVIEMGANHQGEIDQLCRIAEPTHGLITNIGKAHLEGFGGIEGVKKG 191

Query: 210 KAEIFEGLEKTGT-IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K+E++  L +T    F+N D+ F   L +                 +  +++   +    
Sbjct: 192 KSELYRYLAETDGLAFVNNDEPFLVELSSGVRKRIFYERSDDPAPNHKPYEVVLLQLQPF 251

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                +    + +E     +G H  QN+   + +             A+  ++P   R +
Sbjct: 252 IRVAFLDENNQLIEAGSKLMGEHNFQNIKTAVTLGKYFKVPGKKIKAAIENYNPNMNRSQ 311

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 N    +++ ++YNANP+SM+  +      S     +RIA+LGDM E+GE S   
Sbjct: 312 WVSWGTN----SILLDAYNANPSSMEVTLRS---FSESPASQRIAILGDMFELGESSAVE 364

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +A++    N   V L G H  A+   L       +   +  L  + ++   +    +
Sbjct: 365 HERVAQLAQSLNFEQVILVGQHFAAIARQLGW----LHFPNVGALKPWFEARQWENTAFL 420

Query: 449 VKSSNSCGFYRLI 461
           +K S      +L+
Sbjct: 421 IKGSRGMALEKLL 433


>gi|167856474|ref|ZP_02479191.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
 gi|167852397|gb|EDS23694.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus parasuis 29755]
          Length = 464

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 126/475 (26%), Positives = 202/475 (42%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L Q ++G  +G   +     IS D+R    +  FF +KG  +D HD++  A
Sbjct: 1   MIKQTT-QQLAQTLKGKLLG-SGEVVAENISTDTRQAVEKGLFFVLKGEKFDAHDYVEKA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +++G   +VV  ++     ++++P   V+D   AL +LA   +       +A+TGS GKT
Sbjct: 59  IEQGCVALVVEREL-----AVNVPQIIVEDTRLALGQLAKWLKAEINPKTVAMTGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYN----NHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +        N +GVPLTL R+  +  F + ELG +H+GEI 
Sbjct: 114 TVKEMTAKILQKVTACEDQVLYTFGNLNNDLGVPLTLLRLTPEHKFTVVELGANHIGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   ++  +A AHL  F  +  +A AK EI+ GL+  G   +N    + E  K
Sbjct: 174 YTTEIAQPDACLVNNVASAHLEGFGSLAGVAQAKGEIYRGLKTGGKAIVNLAHYYPEWQK 233

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                      Y+   K    DF     +     S   +      +E+    +G H   N
Sbjct: 234 EIGDHELQSFCYTGEDKDSYVDFWAENVELHLNGSRFTLHTPQGEIEINLPYLGEHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L    +   + AD+      L      +GR        N      ID+SYNAN  SMK+
Sbjct: 294 ALAATALAMAVGADLTAVKAGLEQRSAVKGRLYPIEIKEN---VLFIDDSYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+SVL Q        RI V GDM E+G+ S + H ++A+ +    +  V   G     + 
Sbjct: 351 AVSVLKQYPA----FRIFVAGDMAELGKDSPACHQEVADFVKQAKLDLVVSFGKESEVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSL-----VDGDVVVV-KSSNSCGFYRLINLL 464
                    H+      +  F+   +      +  +V++ K S S     +I  L
Sbjct: 407 -----GNSAHHFNDKTAMAAFLLPIILQKIEQNQPLVLLAKGSRSQKMEEVIASL 456


>gi|119505124|ref|ZP_01627200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
 gi|119459106|gb|EAW40205.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [marine gamma
           proteobacterium HTCC2080]
          Length = 456

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 197/465 (42%), Gaps = 20/465 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    +  D            + +   V+G++IDSR + P + F AI G   DGHD++  
Sbjct: 1   MIAPLSVTDFAARCGAELHCEIDKLLEVSGLAIDSRQVKPGDLFVAIPGVKVDGHDYLEA 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+++GAG  +V   +     S ++P   V D   AL       R      ++ ITGS GK
Sbjct: 61  ALERGAGAALVQQQV-----SSALPQLIVSDSEAALQTFGAMTRAAYDGILVGITGSAGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT K ML   LS      A  G+ NN +GVPLTLA +  D ++ + ELG    G+I  L 
Sbjct: 116 TTAKNMLAEILSRAGSVVATKGNQNNELGVPLTLADLNNDTEYAVLELGAGKPGDIARLC 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP+IA++  +APAHL+NF  ++ I+  K  + + L   G   +N DD          
Sbjct: 176 EMARPNIAILLNVAPAHLANFGSLDAISKTKGALLDDLPADGLAVINADDPRVFDW---H 232

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                    +FG +  AD+Q    +      S   +Q   + +EV  +  G     N L 
Sbjct: 233 VRASPTRCLTFGMNCKADYQAIDLQLKGFSGSDFVLQTPEQDVEVTLNVPGRQGIYNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L     T  + L+   P  GRG     A+     +LID++YNANP +++AAI 
Sbjct: 293 AAAVADALGISAITIREGLAAVKPAPGRGG---VAVLSPDASLIDDTYNANPVAVRAAID 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GRR  VLG M E+G   +  H +L        +  +W  G        A 
Sbjct: 350 VLA----SEPGRRRLVLGAMLELGLDEEKLHAELGVYAREAGLDELWAVGSEAAPAAVAF 405

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                         L  +  +        +VK+S        +N 
Sbjct: 406 GEG--ALCFTDTSELITYAPTLWGANTT-LVKASRGAQLEVAVNH 447


>gi|304310314|ref|YP_003809912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
 gi|301796047|emb|CBL44251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HdN1]
          Length = 974

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 132/458 (28%), Positives = 208/458 (45%), Gaps = 20/458 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L + + G   G        G+S D+R++   + FFA+ G  +D HDF+  A   GA
Sbjct: 520 TLASLAERLGGELRG--EDLPFAGVSTDTRALKSMDVFFALVGEKFDAHDFLQQAKVAGA 577

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              VV+         + +P   V+D   AL   A   R R    ++A+TGS GKT+ KEM
Sbjct: 578 CGAVVSR-----WVDVDLPQIKVEDTRLALGAWAGMFRDRFHPRVVAVTGSSGKTSVKEM 632

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    S   +  A  G+ NN IGVPLTL R+     F + ELG +H+GEI +   LVRP 
Sbjct: 633 LAAIFSEEGRVLATSGNLNNDIGVPLTLLRLDDSYQFAVIELGANHVGEIAYTVGLVRPD 692

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT +  AHL  F     IA AK+EI+ GL   G   +N DD + +     + +  + 
Sbjct: 693 AALITNVGEAHLEGFGSRNNIAKAKSEIYTGLVPKGVAVVNLDDDYSQDFLTLNASRNVL 752

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T        N   +         +  +EV + G+ +++  + IG H   N L        
Sbjct: 753 TFSIENTRANCFAKSWSLDP-VGRPRIEVSINGELIQLSLNLIGKHQIANALAAAAAARA 811

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A + +    L+   P +GR        + G +  ID++YNANP+SM+AAI  L+++  
Sbjct: 812 AGASLTSIRDGLNKLQPFKGRMFP----KSLGRWHWIDDTYNANPSSMRAAIDALARLDE 867

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
                ++ +LG M E+GE S   H D+    +   I  +++S                  
Sbjct: 868 ----PKVLILGRMGELGEQSAKLHADIGAYAARAGIRRLFISRDDAGDYARGYRSVTNDG 923

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            +   +  + +   +  S+ +G VV+VK S S    ++
Sbjct: 924 QLFVGDGPEAIAKQLIESMPEG-VVLVKGSRSAAMEKV 960



 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 162/476 (34%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL A++           V+G+  DSR +   + F A+KG H DG D+I  A+++GA 
Sbjct: 10  LGDLL-AVEAEF----ADVMVSGLQQDSRKVQHGDLFVALKGHHVDGRDYIKDALKRGAS 64

Query: 67  LVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
            V+ +   V++   ++    V   DD+   L  +A            +IA+TG+ GKTT 
Sbjct: 65  AVLADRVGVSAEQVVNAHGNVIWRDDLRSELGDIASRFYDEPSKQMRVIAVTGTNGKTTV 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
             +L   L  + ++   IG+     G P  L  +       I                  
Sbjct: 125 SHLLVRLLMRLGESAKTIGTLG--YGHPDHLIPLANTTPDAIQLHEILAACREDGARFVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     V    AV T I   HL     ++    AKA++         + LN
Sbjct: 183 MEASSHGLDQGRLGCVEISTAVFTNITRDHLDYHQTMQAYWEAKAKLA-SWHGLRNLVLN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+    + A +        +S     N D  L +         ++++++ +       
Sbjct: 242 ADDAGVAKMAAVAEHGVKIVWFSLRADANVDVALVRCLYHPRGMSLDIRVKDEVYSFDTR 301

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  L  +          + AL    P +GR              ++ + Y
Sbjct: 302 LMGEFNVANILAVLAALVSEGFSASLVVDALKEIAPVKGRMDCLPHTSGAQLPAVVID-Y 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++ A++ L        G+   V G     G         L   ++  +   V +
Sbjct: 361 AHTPDALQQALNALRHH--CTTGKLWCVFG----CGGDRDKGKRPLMGKIAASSADRVVV 414

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  +  +  V                    DV+++  K 
Sbjct: 415 TSDNPRSEVPDVIIAEIRGGMEATDQVRLVTDRGEAIRDAIFLAAPEDVILIAGKG 470


>gi|33519612|ref|NP_878444.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
 gi|33517275|emb|CAD83659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Candidatus
           Blochmannia floridanus]
          Length = 462

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 133/474 (28%), Positives = 207/474 (43%), Gaps = 21/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +  ++   +   SIG+     +N IS +S  I  +  F A+ G  YDGHDFI  A
Sbjct: 1   MI-LLSVSEISLILNAKSIGMNMNVLINTISTNSNEIKKKCMFIALIGKRYDGHDFIEQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  V+VN        S+++P   V D   AL K+A   R R  + +IAITGS GKT
Sbjct: 60  VMAGAQAVLVNR-----YVSVNVPQIIVVDTYHALVKIASWLRDRVSSKVIAITGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K M    L +     +  G+ NN IGVP+TL  +    DF + ELG + LGE+  L+ 
Sbjct: 115 SVKNMTVSILKNCGTVVSTQGNQNNLIGVPITLLNLTYQSDFAVIELGSNQLGELNKLSK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V   +A++  I  +HLS F  ++ I   K EIF GL   G + +N D +    +     
Sbjct: 175 IVAADVALVNNIFISHLSGFRSLKSIQQEKGEIFSGLACNGQVVINGDSNAV-FMWNSML 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L  +  +S    K  DF               +        V    +G H   N L   
Sbjct: 234 QLKKRWWFSIYVKKEMDFFANNICIYPHGVRFILSSPYGVAPVFLSILGRHSVSNALAAS 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A++   +  L    P  GR         +        +YN+N  SM  AI+VL
Sbjct: 294 ALAFSVGANLSEIVYGLQNIQPLPGRLYPILLNDGKLLLLDD--TYNSNVGSMIEAINVL 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           S +     G RI V+ DM E+GE   +  +H  +A ++S   I  +   G     +    
Sbjct: 352 SVMP----GYRILVISDMLELGERYVAIQYHYYIARLISESKIDQILTIGNISYLISKNC 407

Query: 419 PRSIHVHYSETMDGLFLFIQSS-LVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
               H H     + L  ++ ++ L       ++VK S S    R+++++ ++F 
Sbjct: 408 KEGKHFH---NKNKLIRYLLNNILFQNTYISILVKGSRSFQMERIVDIIRDQFE 458


>gi|257870942|ref|ZP_05650595.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
 gi|257805106|gb|EEV33928.1| MurC UDP-N-acetylmuramate-L-alanine ligase [Enterococcus gallinarum
           EG2]
          Length = 449

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 137/471 (29%), Positives = 210/471 (44%), Gaps = 28/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   +  ++        +    Q  ++ I  DSR +     F  + G   DGH+F   A
Sbjct: 1   MN--LSIKEVAALFG---VECADQTMISSIEFDSRLVTTDSLFVPLAGTR-DGHEFAQQA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA     +   +       + +  V D L A  KLA   + +    +IAITGS GKT
Sbjct: 55  QEKGAIAAFWSHPTI--QPPEGLMIIEVSDTLAAFQKLAKFYKEKLAPKVIAITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   ++   KTY   G++NN IG+PLT+   P D +  + E+GM H GEI  L+H
Sbjct: 113 TTKDMVDAVVAQQFKTYKTQGNHNNEIGLPLTILHAPADTEVLVLEMGMDHAGEIEVLSH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P +A IT I  AH+ N    E IA AK EI  GL+  G   +  D+     L     
Sbjct: 173 LAQPDVAAITLIGEAHIENLGSREGIAKAKMEITAGLDPAGFFMIPADEP----LLTPYL 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   + + +FG       +        E++  +              IG +  +N L+ +
Sbjct: 229 AELTQQVETFGL-----GEGNLKGTIQEETQEQTAFTVADQVYTIPVIGGYNVKNALIAI 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           GI   L  + +     L+ F   + R +  + A       ++ + YNANP +M   +   
Sbjct: 284 GIGRYLGIEEEKIKAGLADFQLTKNRTQWLKAANGAA---ILSDVYNANPTAMGLVLDSF 340

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++     GRRIAVL DM E+G  S   H  +A+ L       ++L G  + ALK AL +
Sbjct: 341 RKLPL--TGRRIAVLADMLELGPDSAKMHAGMADHLDER-FDLIFLYGSEMQALKRALDQ 397

Query: 421 ---SIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  VH+   E    L   +Q  L   D +V+K SN  G   +I+ L  
Sbjct: 398 SRLADRVHFFSKEEKAALITQLQKELQPTDSIVLKGSNGMGLVEVIDSLTA 448


>gi|254226623|ref|ZP_04920203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
 gi|125620842|gb|EAZ49196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V51]
          Length = 453

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAIALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKNVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|213691746|ref|YP_002322332.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523207|gb|ACJ51954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457840|dbj|BAJ68461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 483

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 137/484 (28%), Positives = 205/484 (42%), Gaps = 26/484 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  IG    +        DSR   P   F AI+G H DGHDF+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLIGDADSESRSTNTVSDSRQAGPGSVFVAIRGEHVDGHDFVAK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAIT 114
              +GA + +V+ ++     S  +P   V D + AL +LA     R R       II +T
Sbjct: 60  TAGQGATVAIVDHEV----ESDGLPQIVVKDTVDALGELARHNIVRRRELDGDFDIIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GE
Sbjct: 116 GSVGKTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     
Sbjct: 176 IARLTRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +   +    +       +            +     +  V   G    V     G H   
Sbjct: 236 MAGLASGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVM 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353
           N L    +        +T  + L+  H              +   FTLID+S+NANP SM
Sbjct: 296 NALAAATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           KA ++ L   + +       V  LG M E+G    + H  +    +   I  +   G   
Sbjct: 356 KAGLNGLKAWNSNDGKDPFRVALLGAMLELGADETALHTSIGTYAAELGIDAIIAVGSAQ 415

Query: 409 -FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYR 459
             H+ AL  AL           V     +D     +          VV++K S++ G   
Sbjct: 416 DQHLDALAQALADGARQSPSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSA 475

Query: 460 LINL 463
           L   
Sbjct: 476 LAER 479


>gi|258404870|ref|YP_003197612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797097|gb|ACV68034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 460

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 119/469 (25%), Positives = 199/469 (42%), Gaps = 14/469 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T H++  A             V  I  DSR++ P + F  + G  +DGH+F+  A  KG
Sbjct: 3   LTLHEIANATGAVGDFDPQTPPVCRIQTDSRAVQPGDLFVCLSGERFDGHNFVDEAASKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++    +     S  IPV  V D L AL +LA   R     T++A+TGS GKT+TKE
Sbjct: 63  ASAIIAQQPLFD--LSAGIPVLLVQDTLHALGQLAGYWRRTFGGTVVAVTGSAGKTSTKE 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +   L    +      ++NN +GVPL +     + +F + E G+S  GE+  L  ++ P
Sbjct: 121 CIAGVLGRRGQAAKSYKNWNNRLGVPLNILSFSGEEEFWVLEAGISEPGEMAALASIIAP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T +AP HL     +  +   K  + + L   GT+ L+ D        A +     
Sbjct: 181 DVAVVTNVAPVHLEGLVDVPTVVEEKLHLCDHLTHNGTLVLSVDYPELSQRAASAVCPKT 240

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K+      ++  +        ++   G   E        +MA+N+     +  
Sbjct: 241 YFSVQAEKAPYWCEPIQDPEVY---GRFQLSCDGVRTEFDLPWAADYMAENLAAAACVGH 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +V+  +  L      E RG      L      +ID++YNANP SM+ AI   ++ +
Sbjct: 298 RLGLEVEEIVAGLQTAELPEHRG----QLLTLPGGIVIDDAYNANPHSMQRAIRAAARRA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRS 421
                  + VLG+M E+G  +++ H  L  V+     + V+  G H  A+      +   
Sbjct: 354 GERP--LVLVLGEMAELGPDAEAAHTQLGRVVGAVAPTAVYYQGEHADAVDCGAREVDPD 411

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           + +    +   L     +      +V+VK S S    + I +L +EF A
Sbjct: 412 LRIQRVRSPQDLENAWGAFAKRSPLVLVKGSRSGRMEQYIQVLQKEFGA 460


>gi|86160185|ref|YP_466970.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776696|gb|ABC83533.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 468

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 139/466 (29%), Positives = 205/466 (43%), Gaps = 6/466 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A  G  +G  P   V+G+S D+R++A  + F A+KG  +D HD +  A 
Sbjct: 7   TPHFTSDELAAATGGRWLGAPP-AAVDGVSTDTRTLAAGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSGAWAAAHPAPPRPALAVADTLAALGAIARFHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLDDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     +E +A AKAE++EGL   G   +N DD     +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVEAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + +            +           +   L   + EV  H  G   A N      
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVLSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                 A   T  +           G+R R         L+D+ YNANPASM AA+ VL 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALEVLR 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419
            ++     R +AVLGDM E+G      H  L    +   ++ +   G      A      
Sbjct: 363 DLAAAPGARAVAVLGDMLELGSFEAEAHRALGAEAATAGVAVLAAFGPRARATAEAARAA 422

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|195977779|ref|YP_002123023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974484|gb|ACG62010.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 454

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 121/467 (25%), Positives = 203/467 (43%), Gaps = 30/467 (6%)

Query: 10  LLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           + + +    S+  +    +N I  DSR+I   + F  ++G   DGHDFI  A + GA   
Sbjct: 1   MARVVDAQNSLSDLDDVPLNQIEFDSRNITKGDLFLPLQGER-DGHDFIDLAFENGAVAT 59

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
                +         P   V++ L A  KLA     + +  +IA+TGS GKT+TK+M+  
Sbjct: 60  FSERAIS------GRPYILVENCLAAFQKLAQYYIDKLRVDVIAVTGSNGKTSTKDMIEA 113

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L+   KTY   G+YNN IG+P T+  MP D +  + E+G  H+G+I+ L+ + RPHIAV
Sbjct: 114 VLAKAYKTYKTQGNYNNDIGLPYTVLHMPEDTEKIVLEMGQDHMGDIQLLSRIARPHIAV 173

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I  AHL+ F   E+IA  K +I +G++  G +    D      L      +      
Sbjct: 174 LTLIGEAHLAYFGSREKIAEGKMQIVDGMDSNGILIAPGDPILDPYLPDSQMVIR----- 228

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                     +L        +  +  +       V     G + A N ++   +  +L  
Sbjct: 229 -----FGDHQELVVEDIKERKDSLTFKTNVLPRPVTIPLTGKYNATNAMIAAYVGRLLAV 283

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  I+AL      +    R           L+ + YNANP +M+  +   + I  +  
Sbjct: 284 PDEDIIEAL---EAVKLTRHRTEWIKAANGADLLADVYNANPTAMRLILETFAAIPANLN 340

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVH 425
           G++IAVL DM E+G  S + H  L   L    I  +   G  + AL     +   S  V 
Sbjct: 341 GKKIAVLADMKELGADSVALHSQLITSLDPKRIDQLVFYGDDIQALAKLASQDYPSGRVS 400

Query: 426 YS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +       +  + +  ++ + L   D +++K S+S     +++ L  
Sbjct: 401 FFKKNNQEDQYEDMCQYLLTILEPNDQMLLKGSHSMLLANVVDRLTA 447


>gi|332704505|ref|ZP_08424593.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554654|gb|EGJ51698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 468

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 118/470 (25%), Positives = 203/470 (43%), Gaps = 22/470 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +   +    +G       V  + IDSR + P + F  + G   DGH F   AV+KGA
Sbjct: 5   LSRIATVLNA--VGEQTDGRTVTRVQIDSRVVQPGDLFVCLPGERVDGHSFAADAVRKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+    +    G    PV  V D   AL  LAVA R   ++ ++A+TGS GKTT KE+
Sbjct: 63  VAVLAQRPLPEVDG---APVLLVRDTFKALGDLAVAWRGSVQSRVVAVTGSAGKTTVKEL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++         + NN IG+PL++     + D  + E+G+S  G++  L  +  P 
Sbjct: 120 IAQTLAAEMSVAKNHKNLNNQIGLPLSMLAASGEEDVWVMEVGISRQGDMEELAPIASPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVI  I PAHL     +  +A AKA +   + + G   +N D         +       
Sbjct: 180 LAVIHNIGPAHLEGLGSLRGVAEAKAHLLTSVRRGGAAIVNRDYPELWEAAQRIFPSVRA 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 +++ A +         +     ++L+ + +EV    +G H A+N++       +
Sbjct: 240 M---STQNEKAPYFCTYLGPSQQGGVFLLRLEDERLEVDLPFLGAHFAENVVAAASAAYL 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L     + ++AL+     + R   +    + GF TLID++YNANP SM  AI   ++++ 
Sbjct: 297 LGMSAGSIVQALAKAQLPDQRFAAH----HLGFGTLIDDTYNANPLSMSRAIQAATELAG 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           +     + VLGDM E+G  +++ H+ L E  +    + V   G    A+   L ++    
Sbjct: 353 NRP--LVLVLGDMLELGSEAEAEHVRLGERAAASGCAAVVYRGGFAKAVARGLAQAGFKG 410

Query: 426 YSETMDGLFLF--IQSSL-----VDGDVVVVKSSNSCGFYRLINLLLEEF 468
             + +        +   L       G V++ K S S      +  L   +
Sbjct: 411 RFQEVRAGAELPPVLEDLGLTKEQAGTVILAKGSRSSRMEEFVTALRSSY 460


>gi|121728357|ref|ZP_01681386.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|147673448|ref|YP_001217907.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262168386|ref|ZP_06036083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
 gi|121629348|gb|EAX61779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae V52]
 gi|146315331|gb|ABQ19870.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|227014299|gb|ACP10509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae O395]
 gi|262023278|gb|EEY41982.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae RC27]
          Length = 453

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLSSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR      A  +   TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDM---APLRDDITLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|326693282|ref|ZP_08230287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 441

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 129/468 (27%), Positives = 207/468 (44%), Gaps = 35/468 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           ++   +   +     G    G V G+S +SR + P + F A+   + DGH +I  A+Q+G
Sbjct: 3   YSIAKIGDILNADIQG---SGQVTGVSFNSRQVVPGDLFVALVADN-DGHQYIQDALQRG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+           +P   V D L AL +L    R      ++AITGS GKTTTK+
Sbjct: 59  AAAVLVDDQHD---IPNDVPAVIVPDTLVALQQLGAFRRQELNPKVVAITGSNGKTTTKD 115

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    ++   KT+    ++NN IGVP+TL  MP D +  + ELGM   G++  L+ LV P
Sbjct: 116 MTAAVMAKRYKTFKTPENFNNEIGVPMTLLTMPADTEVLVVELGMDRPGQLTALSKLVVP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+IT I  AH+  F    +IA AK EI  GL+  G +       F E L  ++     
Sbjct: 176 DVAIITMIGEAHIEFFQTRAKIAQAKLEIVAGLKPDGVLC----IPFDEPLLTQADVAQQ 231

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++  G S              E                   I      N++  L  VS
Sbjct: 232 VVVFGDGVSAVQGDATTTTFTYQE---------------TRFAIPLIGGYNIMNALAAVS 276

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A+      +    R    +      LI + YN+NP ++ A ++ L  I 
Sbjct: 277 AGILLHIDLDDAVEALQTFDLTKNRTERLVTARGVNLISDVYNSNPTAVAAVLATLKAIP 336

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----LKDALPR 420
                 +  VLGDM E+GE + + H +LA+ +   N++ V+L G    A    +      
Sbjct: 337 AP---HKYVVLGDMLELGEQAATLHANLAKEILAANVTGVYLVGQLFTANTAPILAPHFD 393

Query: 421 SIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           S H+H  +T  +D L   +++    GDV+++K+S+      ++N L++
Sbjct: 394 SEHLHLYDTHQLDALIADLKTLGDAGDVILLKASHGIHLENVVNALVQ 441


>gi|319639035|ref|ZP_07993793.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
 gi|317399939|gb|EFV80602.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Neisseria mucosa C102]
          Length = 454

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 135/469 (28%), Positives = 205/469 (43%), Gaps = 25/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLG--LPMPSENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 58  LAAGATAVVVSREDCAALKGA----LKVDDTLAALQKLAKAWRENVNPFVFGITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAGVLRHRFGDEAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSL 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT +  P++A++     AH+   F G+ +IA AK+EI+EGL   G   +  +D+     +
Sbjct: 174 LTRIAGPNVALVNNALRAHVGCGFDGVGDIAKAKSEIYEGLLSDGVALIPCEDANIATFE 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A +  L I+T          D      +        ++    + + VV    G H   N 
Sbjct: 234 AATVQLNIQTFGIAS----GDVHAENIELKPLSCTFDLVRGNERVAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       +      L  F   +GR    +        TLID++YNANP SMKAA
Sbjct: 290 VAAAALALAAGLSLAEVSDGLKNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLAAMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +         +    D L   +   L +   V+VK S       ++  L
Sbjct: 403 ETF--GAEGLWFADKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEAL 449


>gi|117924067|ref|YP_864684.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
 gi|117607823|gb|ABK43278.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Magnetococcus sp. MC-1]
          Length = 469

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 201/462 (43%), Gaps = 10/462 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L A +  +         + +S D+RS+ P   F A+ GP++D + ++  AV  GA 
Sbjct: 12  LEQTLSATRVDAQDGTLPEVFHSLSSDTRSLQPGALFVALSGPNHDANLYVQQAVTAGAS 71

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +     S+    IP++ V D L A+ +LA A R    A  I ITGS GKTT KEML
Sbjct: 72  GILCSRPPAQSLP---IPLWVVTDPLAAMTQLARAWRAHLSAKTIGITGSSGKTTVKEML 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            + +SS  +T    G+ NNHIG+PLTL   P D    + E+GMS  GEI  L  L +P I
Sbjct: 129 GLIVSSRYRTGITRGNLNNHIGLPLTLLNCPSDRTHLVLEMGMSAPGEIAHLAELAQPQI 188

Query: 187 AVITTIAPAHLSNF--SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++T I  AH++ F    +       A     L +             +   A   +L  
Sbjct: 189 GIVTNILAAHVAGFGGGNLVSALRGIAHAKGELLQALPHDGLAVLPAIDPHLALLQSLTG 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I SFG   +    +       +   +   +         +  G+     +       +
Sbjct: 249 CAILSFGPQSSGADVVFTPPSYGDDGMLSTLILPNGERFALNLPGFGPHLWLNAVAACAA 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +D A          + +  R      Q    +++++YNAN  +M+ A+  LS ++
Sbjct: 309 AYGLGLDAAAM-QEGLSRFKLQKGRGSVEHGQVGCRILNDTYNANVGAMRVALEALSHMA 367

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSI 422
           P  +   IAVLGDM E+GE + + H +LA+ +    I  ++L+G H+ AL  AL     +
Sbjct: 368 PAPQR--IAVLGDMLELGEAADTLHAELAQTILALGIQRIFLAGPHMAALYQALQSSPGL 425

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + +      L   +   +  GD V+VK S      R++  L
Sbjct: 426 QLFHYADPVALAKDLSHYVGHGDAVLVKGSRGMRMERVVEAL 467


>gi|119478640|ref|ZP_01618543.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
 gi|119448417|gb|EAW29668.1| UDP-N-acetylmuramyl pentapeptide synthase [marine gamma
           proteobacterium HTCC2143]
          Length = 452

 Score =  230 bits (585), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 141/466 (30%), Positives = 217/466 (46%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       D+ +   G   G   +   + +  D+RS++P + F A+ G HYDG+ F+  A
Sbjct: 1   MISALLLSDIARETGGQLFG---EASFSNVCTDTRSVSPGDLFVALAGDHYDGNQFVSDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA   + +  + A+     IP   VDD   AL ++A   R R    ++A+TGS GKT
Sbjct: 58  VIAGAVAAITSEAVTAA-----IPSVKVDDTRFALGQIARLNRRRFSGPVVALTGSAGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L    +  A   ++NN IGVPLTL  +     F + E+G SH+G+I +LT 
Sbjct: 113 TTKEMVARILCERGEVLATEANFNNEIGVPLTLLAIDPSHQFAVVEMGASHIGDIAYLTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P IAV+T     H+  F  IE +A  K EIFE L + G   +N D+ FF+    ++ 
Sbjct: 173 FAEPTIAVLTNAMAVHIEGFGSIEAVAKTKGEIFENLPEGGVAIINQDEPFFQQWLQQAG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T   +  S N  +      Q +  +  E+ L  +++ +    +G H   N +   
Sbjct: 233 KASVVTFSKYDTSANY-YASNIHIQTNASTVFELHLAQQTITIKLALLGEHNVLNAVAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                  A VD   K L    P +GR      A      T+ID++YNA+P S+ AAI VL
Sbjct: 292 AAAMTAGATVDDVKKGLESVRPVDGRL----KASADSNRTVIDDTYNASPGSVMAAIDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S  S    GRR  +LG M E+G L++  H D+A       I  + + G     + ++   
Sbjct: 348 SGFS----GRRCLILGTMAELGGLAEKSHRDVASYARHKGIEELLVVGEFASLVSESFGA 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +      + +  L   +  SL    V++VK S S    R++  L  
Sbjct: 404 AC--LPFDDVQQLLDVLDESLHS-SVILVKGSRSAHMERVVEALKN 446


>gi|23014460|ref|ZP_00054275.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 470

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 189/467 (40%), Positives = 263/467 (56%), Gaps = 5/467 (1%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN PLWT  +   A+ G   G  P     G+SIDSR++ P + F A++GP++DGHD +  
Sbjct: 1   MNRPLWTSAEAAAAVAGTPSG--PAWEARGVSIDSRTVQPSDLFIALEGPNHDGHDHVAS 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  GA   +V+   +        P+  V D + AL  L VA+R RS A I+A+TGSVGK
Sbjct: 59  ALAGGAAGALVHK--LPKGVQDDAPLILVRDTMTALQDLGVASRARSSAHIVAVTGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T +KEML +ALS    T+  +GS+NNH GVPL+LARMP    + IFE+GM+H GEI  L 
Sbjct: 117 TGSKEMLALALSDQGVTHYSLGSFNNHWGVPLSLARMPAGSRYAIFEIGMNHPGEITPLV 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +VRPH+AVITT+   H+  F+   EIA+AKAEIF+G+E  G   L  D++ F  L   +
Sbjct: 177 RMVRPHVAVITTVEMVHMEFFASTAEIAAAKAEIFDGIEPGGMAVLPRDNAHFAFLAEAA 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              GI  I SFG    +  +L       + + +   L  + +       G   A N L  
Sbjct: 237 AKAGITHIRSFGNHIESTARLLDCAVDPQSTAVFALLTDQPLSYRIGVAGRQWATNSLAV 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V  L ADV+ A  AL+     +GRG+R R  ++ G F LIDESYNA+P SMKAAI+ 
Sbjct: 297 LLAVEALGADVNLAAMALAAMSAPKGRGQRRRVEMDGGSFDLIDESYNASPVSMKAAIAA 356

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ + P   GRRIAVLGDM E+G      H  +AE +  +NI  V+ +G     L DAL 
Sbjct: 357 LASVKPAKGGRRIAVLGDMLELGPQGPMLHASMAETVERWNIDLVFTAGILTAHLHDALA 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 ++   D +   +++++  GDVV+VK S      R++N L E
Sbjct: 417 EQRRGGHAADSDAVSALVKAAVRPGDVVMVKGSAGSRMGRVVNALAE 463


>gi|149927128|ref|ZP_01915385.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
 gi|149824067|gb|EDM83288.1| UDP-N-acetylmuramoyl tripeptide-D-alanyl-D-alanine ligase
           [Limnobacter sp. MED105]
          Length = 468

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 128/477 (26%), Positives = 195/477 (40%), Gaps = 30/477 (6%)

Query: 1   MNPL-WTFHDLLQAIQ----GHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M  L W F  +  A+           VP+    V  I  DSR +   + F  + G  +D 
Sbjct: 1   MLELNWAFEHIATALSKLLIAQVNQGVPELPSAVRLIQTDSRLVEKGDLFVCLIGERFDA 60

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           HDF    ++ GA  +V N      +  L I  F V+D   AL  LA A R +    ++A+
Sbjct: 61  HDFAGQVMKSGAAALVTNR-----VLDLPIHQFVVNDTRLALGALASAWRQQFDLKVLAV 115

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            GS GKTT+KEML     +           G+ NN IGVP TL ++       + E+GM+
Sbjct: 116 VGSNGKTTSKEMLGGICKAQCGDDQVLVTAGNLNNDIGVPQTLLKLRPQHQMAVIEMGMN 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H GEI +L  LV+P + ++T     H      +  +A+     F  L   G       D 
Sbjct: 176 HPGEIDYLAGLVKPDVVLLTNAQREHQEFMKTVLAVANENGSAFTHLSSNGCAVFPVSDE 235

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F    +A S         S      ADF++   +    QS + ++     +E+  + IG 
Sbjct: 236 FDACWQALSTGKSTLRFGS-----GADFEILPPRSDFGQSAVVLRALDAPIELRPNFIGE 290

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N               +     L+ F P  GR    + ALN     LI++SYNANP
Sbjct: 291 HNYANAAGAAAAAHAAGCTHEAIQAGLNAFQPVNGR---LQVALNTPSILLINDSYNANP 347

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S+ AA  VL        G  + VLGDM E+G  S  +H ++        + H++  G  
Sbjct: 348 DSVNAASKVL----GQQAGSTLLVLGDMGEVGNQSDEYHAEVGSYAKQAGVKHLYALGDA 403

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLLE 466
                 A        + +T++ L     ++   G   V+VK S      R++  L++
Sbjct: 404 TTHTVLAFGEG--AMHFKTIETLIENTMNTTKQGRWSVLVKGSRFMKMERVVQALVQ 458


>gi|328881791|emb|CCA55030.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Streptomyces venezuelae ATCC 10712]
          Length = 474

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 118/476 (24%), Positives = 188/476 (39%), Gaps = 20/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   + G + IDSR +     F A  G H DGHD+  
Sbjct: 1   MIAL-SLAEIAEIVGGQAHDIPDPAARITGPVVIDSREVRAGSLFAAFAGEHVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                    V      V +   + +P   VDDV  AL  LA A   R    ++A+TGS G
Sbjct: 60  -------RAVAAGAVAVLAARPVGVPALVVDDVQTALGALARAVVERLGTDVVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT  R   +    + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLDRHAPTVWTPGSLNNEIGLPLTALRASDETRHLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 173 TGLTPPRIGLVLNVGTAHIGEFGGREQIAEAKGELVEALPAAEDG-GVAVLNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG++  A  +    +                   V   +          
Sbjct: 232 MASRTKARVTLFGEADEAAVRAENVRLTENGQPSFRLHTPTGCSDVTLRLY-GEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 291 LAAAAVAHELGMPVEEIATALSEAGTLSRWRMEVTERPDGVTIVNDAYNANPESMRAALR 350

Query: 359 VLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
            L+ +   +     R  AVLG M E+G+ S   H  +  +    N+S +   G    +  
Sbjct: 351 ALAAMGRAAQARGARTWAVLGKMAELGDASLVEHDAVGRLAVRLNVSKLVAVGDREASWL 410

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G  ++   LL+
Sbjct: 411 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEQVALALLD 466


>gi|254291797|ref|ZP_04962582.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
 gi|150422309|gb|EDN14271.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae AM-19226]
          Length = 453

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR      A  +   TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDM---APLRDDITLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|312959053|ref|ZP_07773572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
 gi|311286823|gb|EFQ65385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Pseudomonas
           fluorescens WH6]
          Length = 456

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 205/465 (44%), Gaps = 18/465 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    TF +L QA+    +        +G+SIDSR+I P + F A+ GP +DGHD++   
Sbjct: 1   MLKAMTFSELSQALSARVL--SSDCRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA   +V  ++  S     +P   V D   AL +L    R      + A+TGS GKT
Sbjct: 59  AAKGAVGALVQCEVPEST----LPQLLVADTRLALGQLGALNRAAFDKPVAAVTGSSGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   L +     A  G+ NN  G PLTL  +  +    + ELG S +GEI +   
Sbjct: 115 TVKELLAGVLRTRGPVLATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVA 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +PH+A+I     AH+  F G E+I  AK EI EGL+ +GT  LN DD  FE  +A++ 
Sbjct: 175 LTKPHVAIINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGTAVLNLDDKAFETWRARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +                  +        V  + +G H   N L   
Sbjct: 235 GRKVLTFAVLNAAADFHASDITVDA-RGCPSFTLHTPQGREPVQLNLLGNHNVANALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   +      L    P +GR       L      +ID++YNANP+S+ AA+ +L
Sbjct: 294 AAAHALGVSLFGIATGLGAVQPVKGRTVAQ---LATNGMRVIDDTYNANPSSINAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  +GR++ VLGD+ E+GE ++  H ++    +   +  ++  G ++    +A   
Sbjct: 351 KGF----DGRKVLVLGDIGELGEWAEQGHREVGAYAA-GKVDALYAVGPNMAYAVNAFGP 405

Query: 421 SIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  T   L   +  +       +++K S S     ++  L
Sbjct: 406 G--AQHFATQVELIQALTAAEHDKHTTILIKGSRSAVMENVVVAL 448


>gi|229528608|ref|ZP_04417998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|229332382|gb|EEN97868.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae 12129(1)]
 gi|327484901|gb|AEA79308.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Vibrio
           cholerae LMA3894-4]
          Length = 453

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|209696056|ref|YP_002263986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010009|emb|CAQ80332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 452

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 132/470 (28%), Positives = 205/470 (43%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L + +++    QG   G+     ++ +S DSR+I  Q  F A+ G  +D H F+  A
Sbjct: 1   MI-LMSLNEVANICQGRLNGV--NTSISSVSTDSRNIEAQGLFVALIGERFDAHSFVSVA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++V+ ++       S+P   V D   A   L      +  +  IA+TGS GKT
Sbjct: 58  EEQGAVALLVSHEV-----DSSLPQVIVSDTEKAFGLLGQYVHQQCHSFTIALTGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   L    +  A  G++NN IGVPLTL R     DF + ELG +H  EI + T 
Sbjct: 113 TVKEMLASILKRSGEVLATAGNFNNEIGVPLTLLRSQPSNDFSVIELGANHQNEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRP +A++  IA AHL  F  IE +A AK EIFEGL++  T   N D +          
Sbjct: 173 LVRPDVALVNNIAAAHLEGFGSIEGVAKAKGEIFEGLKENATAIYNLDSNGLPRWSD-LF 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S   ++               S   +     S+ V    IG H   N +   
Sbjct: 232 ENKTVLSFSQENNQADFHASNIEINGLGASSFTLNTPVGSIVVSLTIIGKHNVSNAVAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       +    + L      +GR              +ID++YNA+  +MKAA+ +L
Sbjct: 292 ALAVQANCTLADIQQGLQSLENVKGRVAVEVLPSGLK---VIDDTYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                   G R  VLG+M E+G+ S + H ++ E  + Y    V   G     + +    
Sbjct: 349 GGF----NGSRWLVLGNMAELGKESLALHREVGEYAAPYQFEQVITFGDDTKVISEL--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLE 466
             +  + E+ + L  ++   L     +   V+VK +NS     ++  L E
Sbjct: 402 -CNGRHFESRNELNAYLLQELQLIKHNEVTVLVKGANSSRMSEVVLALKE 450


>gi|261855067|ref|YP_003262350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
 gi|261835536|gb|ACX95303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Halothiobacillus neapolitanus c2]
          Length = 474

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 124/472 (26%), Positives = 198/472 (41%), Gaps = 27/472 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   +   +        P   + G+S D+R++ P   F A+KG  +DGHD +  A   GA
Sbjct: 5   SLQQVATWLN-QLSVQQPDITIQGVSTDTRTLVPGNLFVALKGERFDGHDHLADARLAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V+         + +P   V+D L AL  L    R +    +IAITGS GKTT K++
Sbjct: 64  AAAIVSH----LNPDIDLPQIEVEDTLTALQTLGQCWRGQVDPFVIAITGSAGKTTVKQL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    +    T A +G+ NN IGVPLTL  +     F + E+G +HLGEI  LT L RP 
Sbjct: 120 LASICAQAGPTLATLGNLNNDIGVPLTLLSLSDIDQFAVIEMGANHLGEIARLTALARPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT    AH+  F  ++ I   K E+F GL       +N D    +           +
Sbjct: 180 VGLITMAGTAHVGEFGSVDAIVQGKGELFVGLVPEAQAVINLDSYGADRW---WAMGSAQ 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  +        ++   +E+  +    Q           G H A N+L  + +   
Sbjct: 237 RNGFTLNNDPRARWTGEYNATTERLTIFENGQLLIESQPLPLPGAHNATNLLAAVAVART 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  +  L+ F P  GR             T+I+++YNANP SM AA+  L     
Sbjct: 297 AGFSKEIILAGLNSFTPPAGRMS---LVACSEQLTVINDTYNANPESMCAALDYL----V 349

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD--ALPRSIH 423
              G  +AVLGDM E+G+LS + H ++        I  ++  G  +       A+  ++ 
Sbjct: 350 GRPGLHLAVLGDMGELGDLSAALHEEVIAYARGLAIDGLFTLGAAMDVAMKPNAVSSNVS 409

Query: 424 VHY-SETMDG-------LFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLL 465
           + Y ++               + S    G    +++K S      R++N LL
Sbjct: 410 IEYSAKDHADLALALVRALDQLASRSASGTPITILLKGSRFMRMERILNQLL 461


>gi|187251658|ref|YP_001876140.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
 gi|186971818|gb|ACC98803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Elusimicrobium minutum Pei191]
          Length = 450

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 124/468 (26%), Positives = 204/468 (43%), Gaps = 21/468 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T     + + G  I   P    N    DSR +   + F+A+KG  +DG+ F+ +A
Sbjct: 1   MYLNLTLGSFAKIVDGRIIQGNPLMPFNAFITDSRKLTKGDIFWALKGEKFDGNTFLQNA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  +V +      I   +  +  V++ L AL  LA   R RS   ++AITGS GK+
Sbjct: 61  VDAGASALVADKFFADKIDLKNTALVEVENTLTALQTLAAYHRRRSDLKVVAITGSNGKS 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+ML     +     A +G+ NN  G+P +L  +     FG+FELG S  G+I  +  
Sbjct: 121 TTKQMLLSICKTSGPARANMGNLNNQFGLPFSLLEIDSKDKFGVFELGASKKGDILEIGK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P +A+IT ++ AHL  F  ++ +   K E+ + L   G +  N DD+  + LK +  
Sbjct: 181 PTLPDVAIITNVSAAHLQFFKDLKTVYETKTELIDCLNFGGILVFNSDDAMLKKLKTEYK 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    SFG    AD Q++  K                 +           ++  +  
Sbjct: 241 GKAI----SFGFKSGADLQIKNKKNL-----------EFVYKGEVFSFDLQFEKHNKLNA 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +     +      +                   G    I + YNANPASM    + +
Sbjct: 286 AAAAAGAIALGLYKDNIEKGLAAYEAMPMRMEERKIGNVDFILDCYNANPASM---KNAI 342

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
           + ++    G R+AVLGDM E+G  S  +H  LA++L    I +++LSG  + A  +AL  
Sbjct: 343 TLLAKRKAGPRVAVLGDMKELGNCSAKYHAHLAKILIGKQIDYIFLSGPEMAAAAEALKT 402

Query: 420 --RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +  + YS         ++  L +G   ++K+S S  + ++++ L 
Sbjct: 403 KNPAAKLKYSLEYKDWAQDLKEVLKNGGTCLIKASRSMNYEKILDCLK 450


>gi|282891537|ref|ZP_06300028.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498505|gb|EFB40833.1| hypothetical protein pah_c180o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 455

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 119/462 (25%), Positives = 201/462 (43%), Gaps = 16/462 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TFH++ Q +           F   + +DSR +   + F A+ G   DGH F+    +KG
Sbjct: 6   LTFHEICQILNSPVFPAEIDSFTPSVVVDSRLLQKNDLFIALPGEKTDGHHFLNEVEKKG 65

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   +V+ D +     +  +P+ GVDDVL AL KLA     + +  I+AITGSVGKTTTK
Sbjct: 66  AAAAIVSNDFLRQNKTNFHMPILGVDDVLEALQKLAQEYLKQRQVKIVAITGSVGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLV 182
            +L   L          G+ N+ IG+PL++       +   I E+GM+  G I+ L  + 
Sbjct: 126 HLLFQLLQKHFSVAFSPGNQNSQIGLPLSILNHYHGHEDVLILEMGMTAQGHIQKLIEIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IA++T +   H++    +E IA AK EI    +      +           A  H  
Sbjct: 186 PPDIAIVTALELVHVAGVHSLENIAHAKREILTHPK-----TMLGLIPSEIPFYALLHET 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G     SF             ++  +   +        +      +G H   N L  +  
Sbjct: 241 GTCRKQSFSTLSIQADYC--LREQDQHLQIRDSQGLSPLLPRLPFLGKHNQHNFLAAISA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L        + +      E R ++            I++SYNA   S+KAA+  L  
Sbjct: 299 CRALGMTWSDIQQVIPTLTLPERRLEQVIKKG----ILFINDSYNAALTSVKAALDAL-P 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-S 421
                 G+RI V+G+M E+G  S++ H ++  +LSL  +  +   G   L +++   + +
Sbjct: 354 PPLQFSGKRIGVIGEMVELGTFSEACHREVG-ILSLAKLDLMICYGDGCLPIEEVWKKHN 412

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             VH + T + +   ++  ++ GDVV++K SN    ++++  
Sbjct: 413 KPVHLTLTFEQVIAELKQHVLPGDVVLLKGSNKKQLWKVLEY 454


>gi|46191056|ref|ZP_00120693.2| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|291516663|emb|CBK70279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium longum subsp. longum F8]
          Length = 480

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 134/480 (27%), Positives = 201/480 (41%), Gaps = 25/480 (5%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+     +
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAITGSVG 118
           GA + +V+ ++     S  +P   V D + AL +LA     R R       II +TGSVG
Sbjct: 61  GATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  L
Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +   
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDEHVVPMAGL 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           ++   +       +            +     +  V   G    V     G H   N L 
Sbjct: 237 ANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
              +        +T  + L+  H              +   FTLID+S+NANP SMKA +
Sbjct: 297 AATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSMKAGL 356

Query: 358 SVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411
           + L   + +       V  LG M E+G    + H  +        I  +   G     H+
Sbjct: 357 NGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQDQHL 416

Query: 412 LALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINL 463
            AL  AL           V     +D     +          VV++K S++ G   L   
Sbjct: 417 DALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSALAER 476


>gi|85714969|ref|ZP_01045954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
 gi|85698166|gb|EAQ36038.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrobacter
           sp. Nb-311A]
          Length = 465

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 198/459 (43%), Positives = 264/459 (57%), Gaps = 2/459 (0%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A++    G +P   +NGISIDSR+IAP EA+FAIKG  +DGH F+  A++ GA L V
Sbjct: 1   MAAAMRADRRGALP-AAINGISIDSRTIAPGEAYFAIKGDVHDGHAFVDAALRAGAALAV 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V         +   P+  VDDVL AL  LA A+R R  A +IA+TGSVGKT+TKE L   
Sbjct: 60  VEAAQRDQFAA-DAPLLIVDDVLAALCDLARASRARLAAQVIAVTGSVGKTSTKEALRSV 118

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + +  KT+A + S+NNH GVPL+LAR P D  F +FE+GM+H GEI  L  +VRPH+AVI
Sbjct: 119 VDAQGKTHASVASFNNHWGVPLSLARCPADARFAVFEIGMNHAGEITPLVKMVRPHVAVI 178

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+ P HL  F+GIE IA AKAEIFEG+E  G + LN D++ F  L  ++  LGI  I S
Sbjct: 179 TTVEPVHLEFFAGIEAIADAKAEIFEGVEPNGAVVLNRDNAQFARLHGRAKKLGIARIVS 238

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  + AD +L         S +  ++ G  +       G H+A N L  L   S+  AD
Sbjct: 239 FGADEKADARLLDVALHPTCSAVHAEILGHELTYKLGMPGRHIAMNSLAVLASSSLAGAD 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A  ALS   P  GRG R   A+  G   LIDESYNANPASM AA+ VL        G
Sbjct: 299 LALAGLALSQAQPAAGRGVRRALAVPGGEAILIDESYNANPASMAAALGVLGGAGIGKLG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           RRIAVLGDM E+G  S   H  LAE ++   +  ++  G  +  L +AL       Y+E 
Sbjct: 359 RRIAVLGDMLELGPKSADLHRGLAEAINANAVDMIFCCGPLMRNLWNALSSGKRGGYAED 418

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
              L   + +++  GDV++VK S       +++ L + F
Sbjct: 419 SVALESQVTAAIRSGDVIMVKGSLGSRMKVIVSALEKRF 457


>gi|293392863|ref|ZP_06637181.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
 gi|291424722|gb|EFE97933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Serratia odorifera DSM 4582]
          Length = 453

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 128/471 (27%), Positives = 202/471 (42%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   L   +    IG      +N ++ D+R I P   F A+KG  +       H 
Sbjct: 1   MISV-SLQALADVLSAELIG--ADCQINEVTTDTRQITPGCLFVALKGERF-----DAHD 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+    L  P   V D   AL +LA   R +  A ++A+TGS GKT
Sbjct: 53  FAADALAAGAGALLVSKRLPLGAPQLVVKDTRLALGQLAAWVRQQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L    +     G++NN IGVPLTL R+    DF + ELG +H+GEI + T 
Sbjct: 113 SVKEMTAAILRQCGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   + +  
Sbjct: 173 LTRPQTALVNNLAAAHLEGFGSLAGVAQAKGEIFAGLPADGVAIINADNNDWPHWQTQLV 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   +S   +   DF   +     + +   +     ++ +     G H   N L   
Sbjct: 233 GKTVWR-FSPQATDGVDFFASEISVNGKGTQFTLHSPFGAVAIELPLPGRHNVANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + + + A ++     L       GR    +         L+D+SYNAN  SM AA  VL
Sbjct: 292 ALATSVGASLEAVRVGLGQLQAVPGRLFPIQLKPG---QLLLDDSYNANVGSMTAAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V GDM E+G+ ++  H  + E   L  I  V   G     L  A   
Sbjct: 349 AEMP----GYRVLVAGDMAELGDEAEECHRQVGEAARLAGIDKVLTVGSLSQLLSAA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
           S    + +    +   +   L +  V  V++K S S    +++  L E+ P
Sbjct: 402 SGQGEHFQDKAAVIARVAELLTEHTVITVLIKGSRSAAMEQVVRALQEKAP 452


>gi|242238096|ref|YP_002986277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Dickeya
           dadantii Ech703]
 gi|242130153|gb|ACS84455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Dickeya
           dadantii Ech703]
          Length = 453

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 127/462 (27%), Positives = 206/462 (44%), Gaps = 20/462 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + +    +G      +  +S D+R +     F A++G ++D HD+        A 
Sbjct: 6   LQQLAEVLGARLVG--ENLTIGEVSTDTRKLTAGCLFVALRGENFDAHDYAAD-----AV 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                  +V     + +P   V D   AL  LA   R +S A ++A+TGS GKT+ KEM 
Sbjct: 59  AGGAGALVVCKRLPIEVPQLVVADTRLALGALAAWVRSQSHARVVALTGSSGKTSVKEMT 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L          G++NN IGVPLTL R+  + DF + ELG +H+GEI + T LV+P  
Sbjct: 119 ASILRQCGNVLYTAGNFNNDIGVPLTLLRLAPEHDFAVIELGANHIGEIAYTTELVKPET 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  IA AHL  F  +  +A AK EIF+GL + G   +N D +     +  S A     
Sbjct: 179 ALVNNIAAAHLEGFGSLAGVAQAKGEIFDGLPENGVGIINADSNDIARWQP-SLAGKTLW 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +S   + +ADF     +     +   +      ++V     G H   N L    +   +
Sbjct: 238 RFSSQPASSADFLASDVRAADLGTAFTLHTPVGQVDVTLPLPGRHNIANALAATALAISV 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A ++     LS      GR       L      L+D+SYNAN  SM AA  VL+++   
Sbjct: 298 GASLEAVKLGLSRLQAVPGRLF---PILLAPGKRLLDDSYNANVGSMTAAAQVLAEMP-- 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G ++ V+GDM E+G+ +++ H  +     L  I  V   G     + +A   S    +
Sbjct: 353 --GYQVMVVGDMAELGQEAEACHRQVGAAAKLAGIDKVLSVGTLSALIGEA---SGVGEH 407

Query: 427 SETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLE 466
            +    L   +++ + + +   V++K S S    +++  L E
Sbjct: 408 FDNKTALTARLRALVAEHNTITVLIKGSRSAAMEQVVRALQE 449


>gi|239621163|ref|ZP_04664194.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
 gi|239515624|gb|EEQ55491.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Bifidobacterium longum
           subsp. infantis CCUG 52486]
          Length = 480

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 134/480 (27%), Positives = 201/480 (41%), Gaps = 25/480 (5%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ +A+ G  IG    +        DSR   P   F AI+G   DGHDF+     +
Sbjct: 1   MSVEEIAKAVDGRLIGDAGSESRATNTVSDSRQAGPGSVFVAIRGERVDGHDFVAKTAGQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS---KATIIAITGSVG 118
           GA + +V+ ++     S  +P   V D + AL +LA     R R       II +TGSVG
Sbjct: 61  GATVAIVDHEV----KSDGLPQIVVKDTVDALGELARYNIVRRRELDGDFDIIGLTGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L+  L+++  T A +GS+NN IG+PLT  R+     F + E+G SH+GEI  L
Sbjct: 117 KTTTKDLLSSLLATVGPTVAPVGSFNNEIGLPLTALRVDEHTRFFVAEMGASHIGEIARL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P+ A++  +  AHL  F   E IA AK+EI +GL   GT  LN DD     +   
Sbjct: 177 TRIAPPNTAIVLKVGVAHLGEFGSRERIAQAKSEIVQGLLTGGTAVLNADDEHVVPMAGL 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           ++   +       +            +     +  V   G    V     G H   N L 
Sbjct: 237 ANGDVLWFGLGSSQEPEVRAIDVTADRSDHAEFTLVDADGNHTPVHLGIPGRHNVMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAI 357
              +        +T  + L+  H              +   FTLID+S+NANP SMKA +
Sbjct: 297 AATVAMRYGMAPETVARILASQHTISPHRMALSTVNREGTSFTLIDDSFNANPDSMKAGL 356

Query: 358 SVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411
           + L   + +       V  LG M E+G    + H  +        I  +   G     H+
Sbjct: 357 NGLKAWNSNDGKEPFRVALLGAMLELGADETALHTSIGTYADELGIDAIIAVGSAQDQHL 416

Query: 412 LALKDALPRSIH------VHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINL 463
            AL  AL           V     +D     +          VV++K S++ G   L   
Sbjct: 417 DALAQALADGARQSQSASVDCVHDIDAAEQLVIDLARNHPDAVVLLKGSHASGLSALAER 476


>gi|94269092|ref|ZP_01291367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93451352|gb|EAT02220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 202/471 (42%), Gaps = 21/471 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R  +  ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +                        + +      V    +G H   N L   
Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +            L+ + P   R +            LID++YNANP+SM AA++ +
Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLK---LIDDTYNANPSSMLAALATV 381

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
             +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G     + +A   
Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVEAARY 439

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462
               +         + +   ++  +  G     D+V+ K S       +I+
Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|306822426|ref|ZP_07455804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553971|gb|EFM41880.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 493

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 135/491 (27%), Positives = 207/491 (42%), Gaps = 33/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +                 DSR +     F AI G   DGHDF
Sbjct: 1   MMPMG-LAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++        +P   VDD + AL +LA     R     S  T+I
Sbjct: 60  VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235

Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +   +    +           +    +  +  +    S+     +G+  +V     G
Sbjct: 236 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348
            H   N L    +   L   +D     L+                  +  FTLID+S+NA
Sbjct: 296 MHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355

Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +  L +   + E +    AVLG M E+G   ++ H  +        +  +  
Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVDALIA 415

Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452
            G       DAL  +              V ++  +D     +        G VV++K S
Sbjct: 416 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 475

Query: 453 NSCGFYRLINL 463
           ++ G   L   
Sbjct: 476 HASGLSALAER 486


>gi|116495994|ref|YP_807728.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei ATCC
           334]
 gi|116106144|gb|ABJ71286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei ATCC 334]
          Length = 462

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+     L  +    
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +        ++   +   I      N++  L  
Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +                  +    R +  +      ++ + YNANP +MKA I   S+
Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--- 419
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL D L    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADTLAAKY 409

Query: 420 RSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +  +HY   +  + +   +Q+ +   D+V++K+S+      +++ L+ 
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458


>gi|312130994|ref|YP_003998334.1| udp-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Leadbetterella
           byssophila DSM 17132]
 gi|311907540|gb|ADQ17981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leadbetterella
           byssophila DSM 17132]
          Length = 433

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 125/440 (28%), Positives = 192/440 (43%), Gaps = 23/440 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI+ D+R+I     FFA+KG  ++G+ F   A+Q GA   VV+   +         +  
Sbjct: 14  SGITTDTRNIQKDNLFFALKGEKFNGNGFAEQAIQDGAAYAVVDDASLKGKE----RMIY 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +DVL  L  LA   R +    +IA+TGS GKTT KE+LT  L    K +A  G+ NNHI
Sbjct: 70  CEDVLETLQALARHHRRQFDIAVIALTGSNGKTTNKELLTRVLGQKYKVHATKGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  MP D    I E+G +H  EI  L  +  P    IT +  AHL  F G E I 
Sbjct: 130 GVPLTLLSMPDDAQVAIIEMGANHQKEIALLCSIAEPTHGFITNLGKAHLEGFGGEEGIR 189

Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+F+   +  G +F+N +D     L  + + L I                      
Sbjct: 190 KGKGELFDFLKQSGGIVFVNANDPKVRALAEERNILPI---------VYYGDDEDALLIK 240

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E   +  +             G +   NM     I        D A +A++ ++P   R
Sbjct: 241 EESPVVVFESPVSGKTYTTFIGGKYNFDNMQTAHAIGRYFDVSEDKACEAIAHYNPDNNR 300

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N      I ++YNANP+SM+A++     +        + VLGDM E+G+ S+
Sbjct: 301 SQHVMVGTNH----FIMDAYNANPSSMEASLKSFGALKTDSPK--VVVLGDMYELGDYSE 354

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H  + ++LS      V L G ++ A    LP+    +Y      +  ++     +   
Sbjct: 355 AEHAAIGKLLSELKFDDVVLFGENMKAALAFLPK---AYYFTDKFSMHNWLLDRKYENTY 411

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           ++VK S S G   ++     
Sbjct: 412 ILVKGSRSTGLESVLKAFQN 431


>gi|229514034|ref|ZP_04403496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
 gi|229349215|gb|EEO14172.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae TMA 21]
          Length = 453

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|83589690|ref|YP_429699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572604|gb|ABC19156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 465

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 135/474 (28%), Positives = 200/474 (42%), Gaps = 40/474 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++  AI G+ +   P   V G+S DSR I P  AF A+KG  +DGHDFI        
Sbjct: 5   TVREICDAIGGYLVAGDPAVVVKGLSTDSREIQPGMAFVALKGERFDGHDFIGA------ 58

Query: 66  GLVVVNTDMVASIGSLSIP------------VFGVDDVLGALNKLAVAARLR-SKATIIA 112
                 +   A+    S P            +  VDD L AL KLA   R +  K  +I 
Sbjct: 59  ----ALSGGAAAAIGTSFPGHQVVGLRPGQALIQVDDTLLALQKLAAYHRQKVLKGPLIG 114

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTTTK ++   LS + K     G++NN IG+P+TL R+       + E+ M   
Sbjct: 115 VTGSSGKTTTKNLIAAVLSPVLKVLKTPGNFNNEIGLPMTLLRLAPWHQAAVVEMAMRGK 174

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + RP I VIT I   HL     I  IA+AK E+   L   G   LN D+ + 
Sbjct: 175 GEIASLAAIARPTIGVITNIGTTHLGLLGSIANIAAAKGELLAALPAEGLAVLNGDNEWC 234

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             L A         +  F      +   R    +  E ++      GK + V     G H
Sbjct: 235 RRLAA----TCPCRVVFFSTRGQGEIYARDIGDRGLEGTFFTAVFPGKEVRVQLPVPGRH 290

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             ++ L  L +   L  + +T  ++L+ +        R       G   + +++YNANP 
Sbjct: 291 NVEDALAALAVGFSLGVEPETMARSLADWP---AEDLRQDLRPGPGGSLVFNDAYNANPE 347

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AA+  L  +     GRR+AVLG M E+G      H  +    +   +  +   G   
Sbjct: 348 SMEAALQALGALP----GRRVAVLGAMLELGPAEVELHRRVGRFAAARGLYRLITVGELA 403

Query: 412 LALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             +      +      V    T +     ++  L  GDVV+ K S   G  +++
Sbjct: 404 GEIAAGALEAGMPADQVFACLTHEEAAGHLRG-LGHGDVVLFKGSRLTGMEKVL 456


>gi|254487020|ref|ZP_05100225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
 gi|214043889|gb|EEB84527.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseobacter sp. GAI101]
          Length = 478

 Score =  229 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 161/476 (33%), Positives = 240/476 (50%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  +   A  G ++G       +G+SID+R++   + F A+K    DG DF+  A
Sbjct: 1   MS-LWTATEAAAATGGRAVG---DWSCDGVSIDTRTLQAGDLFVALKDVR-DGQDFVATA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGAG  +V+   V    +   P+  VDDVL  L  L  AAR R+ A ++A+TGSVGKT
Sbjct: 56  LEKGAGAALVSR--VPDGVADDAPLLIVDDVLKGLEALGAAARARTSAKVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML    +   + +A + SYNNH GVPLTLARMPVD D+ + E+GM+H GEI  L  
Sbjct: 114 STKEMLLAIFADQGRAHASVDSYNNHWGVPLTLARMPVDTDYAVIEIGMNHPGEISPLAI 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P  A++TT+A  HL  F  +  IA  KA IF+GLE  G   +N D     +L AK+ 
Sbjct: 174 LTKPDAAMVTTVAAVHLEAFDDVAGIALEKAAIFDGLEPGGVAVINADIDHAAILMAKAV 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++ I          F+L+  +   + + ++    G  +       G H A N L  L
Sbjct: 234 DRRLRDIEF--GENAYHFKLKDVQVQGDVTVVQADADGTPLLFKIGTPGRHFAMNALGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKE----GRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +   + AD+  A  +L  + P +               +   +LID+SYNANP SM AA
Sbjct: 292 AVAQAMGADLALAAASLGRWTPYKGRGVREVIHLDSVETRMTLSLIDDSYNANPTSMAAA 351

Query: 357 ------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   V   I    +GRRIA LGDM E+G    + H  LA + +   +  +   G  
Sbjct: 352 LEVLAASEVTHDIGRVSKGRRIAYLGDMKELGPDEIALHAGLAHLDATKKLDVIHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L D +P      ++ T   L   + + L  GDVV+ K S S     +++ + +
Sbjct: 412 MRSLYDLIPAHQRGDWAATSAELLPGLGAHLDSGDVVLAKGSLSMKLGLIVDAIRK 467


>gi|229817315|ref|ZP_04447597.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
 gi|229785104|gb|EEP21218.1| hypothetical protein BIFANG_02576 [Bifidobacterium angulatum DSM
           20098]
          Length = 489

 Score =  229 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 143/488 (29%), Positives = 211/488 (43%), Gaps = 31/488 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ T  ++ +A+ G  +     VP+G V      DSR +     F AI+G   DGHD+
Sbjct: 2   MMPM-TIGEVAEAVAGRLVEGANGVPEGAVALHAVSDSRQVENGSVFVAIQGERVDGHDY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLR---SKATII 111
           +     +GA   +V+ ++  +    ++P   VD+ + AL  LA    AR R      TII
Sbjct: 61  VASVADQGAVAAIVDHEVPGA----AVPQIVVDNTVTALGDLAKANIARRRASGEPFTII 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK++    LS++  T A +GS+NN IG+PLT   +     + + E+G +H
Sbjct: 117 GITGSVGKTTTKDLTKALLSTLGPTVAPVGSFNNEIGLPLTALTVGEHTRYFVAEMGANH 176

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT +  P IAV+  +  AHL  F  +E IA AK EI  GL   G   LN DD  
Sbjct: 177 VGEIAHLTTIAPPDIAVVLKVGVAHLGEFGSVERIAQAKTEIVRGLLPNGIAMLNTDDEH 236

Query: 232 FELLKAKSHAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            E + A +           S                    S+  V   G+  +V     G
Sbjct: 237 VEAMSAVAPGEVLRFGIDESNAGRDALHACDIVTDSFDRASFTMVAGDGEQSQVALAIPG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            H   N L    +   L   ++   +      H    R            FTLID+S+NA
Sbjct: 297 AHNVMNALAAAMVAHRLGMPLEDIARVLGEQRHISPHRMAVSTVERGGARFTLIDDSFNA 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM A +  L++    G   R+AVLG M E+G   +  H  +    + + I  V   G
Sbjct: 357 NPDSMHAGLDGLARW-SEGAQYRVAVLGAMLELGGDEKQLHRSIGAYAAEHGIDEVVAVG 415

Query: 409 FHVLALKDALP-----------RSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSC 455
                  DAL             ++ V ++ +       I       +G VV++K S++ 
Sbjct: 416 SPTDQALDALAGELAQGAKNADGAMAVEWAHSAAQADDMIVRIAREHEGTVVLLKGSHAS 475

Query: 456 GFYRLINL 463
           G   L   
Sbjct: 476 GLSTLAER 483


>gi|303246303|ref|ZP_07332583.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
 gi|302492366|gb|EFL52238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio fructosovorans JJ]
          Length = 470

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 128/468 (27%), Positives = 195/468 (41%), Gaps = 14/468 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  D+L A +    +G      +  + IDSR++ P   F  I G  +DGH+F   AV K
Sbjct: 3   MTLSDILTATKAVGDVGERGNPVIEAVRIDSRAVTPGCLFVCIPGERFDGHNFAAEAVGK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +  +         PV  V D + AL  LA A R +  A ++ +TGS GKTT K
Sbjct: 63  GAAAVLADRPLTG--LPDGTPVLLVRDTVAALGFLAKAWRTQVGARLVGVTGSAGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    L  +  T     ++NNHIG+PL++        + + ELG+S  GE+  L  +  
Sbjct: 121 ELTAAILGKLGPTAKNYKNFNNHIGLPLSMLEASDKDAYWVMELGISRPGEMEPLAAIAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--FFELLKAKSHA 241
           P +AVI  + PAHL     +  +A+ K ++F  L   G    + D    +   L      
Sbjct: 181 PDVAVIHNVGPAHLEALGDVAGVAAEKTKLFNFLRPGGVALASMDYPELWEAALAVFPRV 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+ T                      +    ++L    MEV     G H A+N+L    
Sbjct: 241 RGLSTKGQGKGRSAPYRAKYLGALPEGRGRFFLKLGELEMEVETPLTGGHFAENILAAAT 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              IL A        L      E R    R    QG +T+ID++YNANP SM+ AI+   
Sbjct: 301 SAHILGAGEKQIAAGLETAVMPEQRFYCRR----QGCYTIIDDTYNANPLSMRRAIAAAV 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           + +       + VLG+M EMG  ++  H  L E  +      V+  G H  A+ + L R 
Sbjct: 357 ETAQ--GKPLVLVLGEMREMGAHAEEEHAKLGEAAAASGARAVFYRGAHAEAVGEGLTRG 414

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                    +T       + +  + G V + K S S      +    +
Sbjct: 415 GYAGRFAVVDTPAAFCDMLAAMDLRGGVFLFKGSRSMRMEEYLAAFTQ 462


>gi|220912335|ref|YP_002487644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859213|gb|ACL39555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 488

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 207/477 (43%), Gaps = 19/477 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   +T  ++    +G      P      +  DSR   P   + A  G H DGHDFI  A
Sbjct: 1   MIA-FTAAEIADITKGRL-DADPGITPTSVVTDSREATPGSLYVAKPGEHADGHDFIAAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR---------SKATII 111
            + GA L +V        GS S P   V+D + A+  LA  A  R          + T++
Sbjct: 59  FESGAVLALVERPAARPDGS-SYPSVLVEDAVLAMGALAAEAVRRIRAARAAAVQELTVV 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK++L    +S   T A  GSYN  +GVPLT+ +      + + E+G + 
Sbjct: 118 GITGSAGKTTTKDLLAGLFASQGSTVAPKGSYNGEVGVPLTVFQADEGTRYLVIEMGATG 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +G IR+L  +V+P I V+  +  AH   F G++ IA AK E+ EGL   GT  +N DD  
Sbjct: 178 IGHIRYLADMVKPDIGVVLAVGTAHAGEFGGVDNIALAKGEMVEGLSADGTAIINLDDDR 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +++++ A  +    + G+   A   L            ++QL G             
Sbjct: 238 VAAMRSRTTATVLG-FSAEGRGGAAVQALSADTNEHGNPEFDLQLPGSDGPQHVASKLIG 296

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                 +     +   A +  A  A  +         R          T+I+++YNANP 
Sbjct: 297 AHHTGNLLAAAAAAFAAGMSGADIAAGLSKQSAASRWRMERTERADGVTVINDAYNANPE 356

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AA+  L+ +      R  AVLG M E+G+ S   H  +   +   NIS + + G   
Sbjct: 357 SMRAALRTLADL--GRGRRTWAVLGAMLELGDDSIREHTAVGTQVVRLNISRLVVVGREA 414

Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL               ++E  D  +  + + L  GD+V+ KSSNS G   L + +
Sbjct: 415 RALYVSAVQEGSWGDECLFAENPDEAYELLNAELEPGDLVLFKSSNSVGLRHLGDRI 471


>gi|332283261|ref|YP_004415172.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427214|gb|AEC18548.1| D-alanyl-D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 934

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 121/442 (27%), Positives = 201/442 (45%), Gaps = 21/442 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            IS D+RSIA  + F A+KG  +DGH ++  A++ GA   VV     A    +++P F +
Sbjct: 499 SISTDTRSIAKGQLFVALKGEAFDGHAYLATALEAGACAAVVEHKDTA----VALPQFVL 554

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYNN 145
            D   AL +++   R +    ++A+TGS GKTTTKEM+              A  G+ NN
Sbjct: 555 GDTRQALIRISTLWRRQHDLPVVAVTGSNGKTTTKEMIASIFRQSPGEEASLATRGNLNN 614

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLT+ R+       +FELGM+H GEI  L  + +P +A++      H      +E 
Sbjct: 615 DIGVPLTVLRLNRQHRAAVFELGMNHPGEISLLAGIAQPTVALVNNAQREHQEFMLTVEA 674

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A     + + L   G      DD++ +L        G +T+  FG S + D    +   
Sbjct: 675 VARENGTVIDMLPVDGIAVFPGDDAYSDLWAE---LAGTRTVLRFGFSPDFDVYADQIHA 731

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +   +     S  +     G H  +N L            +++ ++ L  F+P  G
Sbjct: 732 EPTHTVCCIHTPIGSATLALASPGVHNLRNALAAAACAFATGVPLESIVQGLEAFNPVSG 791

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R + +  A       LID++YNANP S++AAI VL+++    +G+R+ VLGDM E+G   
Sbjct: 792 RMQPHALAGGYQ---LIDDTYNANPDSVRAAIDVLAEL----DGKRVLVLGDMGEVGANG 844

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            + H ++        I  +   G   +    A           +++ L   + + +    
Sbjct: 845 DAMHAEVGAYAHERGIDVLLAFGTACVHAVQAFGAGGQS--FTSIEALNSRLLTEMPA-- 900

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
            ++VK S S    R++  L +E
Sbjct: 901 HILVKGSRSTRMERVVRALEKE 922



 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 171/485 (35%), Gaps = 51/485 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    +++  +  H            + +D+R ++  + FFA  G   DG D+I  A
Sbjct: 1   MT-LMNAQEVISWLSRHVSPKAQ------LCLDTRQLSAGDVFFACVGLTGDGRDYIAQA 53

Query: 61  VQKGAGLVVVNTDMVAS-IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           V+ GA  +V+  D  AS   ++ +PV  V D+ G L  +      R     +++A+TG+ 
Sbjct: 54  VEAGAAAIVMQADDRASATPAIDVPVLAVPDLPGQLGSIGHLWYDRPSEDMSVVAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGV--------PLTLARMPVDVDF 162
           GKT+  + L  AL++       I        + NN  GV                     
Sbjct: 114 GKTSCVQWLAAALNAEGTPCGTIGTLGVTLPNGNNLGGVLTTPDVLSMHRSLATMRAAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  L  S +G  +     VR  IA  T +   HL     ++    AK  +         
Sbjct: 174 QVVALEASSIGLDQGRLDQVRIVIAAFTNLTHDHLDYHGTLDNYQRAKFSL-FAWPGLRG 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD   + L + +        YS      A  Q +            V  +  +++
Sbjct: 233 AVVNVDDPAGKQLVS-TLPPASTLAYSISGHAEATIQAQDIHAGRYGLVFNVVTRDGAVQ 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR---CALNQGFF 339
           ++   +G H   N+L+  G++  L  D+    + LS     EGR +              
Sbjct: 292 LLTRLVGEHNVANLLLVTGVLQQLGWDLSRIARVLSTLRSVEGRLQVVDALGAVGAAHGQ 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++   Y   P ++K A+  L  ++    G+ I V G     G         +   +++ 
Sbjct: 352 AMVVVDYAHTPDALKRALLALRDVARVRGGKLICVFG----CGGSRDRSKRPMMGRIAVE 407

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVVV 448
               V L+  +            +K  +  +  V     +D     + S       DVV+
Sbjct: 408 LADEVVLTNDNPRLEEPLDIIAQIKSGMSTAARVE----LDRALAILSSIWAADAHDVVL 463

Query: 449 V--KS 451
           +  K 
Sbjct: 464 LAGKG 468


>gi|27904703|ref|NP_777829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
 gi|46396400|sp|Q89AQ1|MURF_BUCBP RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|27904100|gb|AAO26934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase [Buchnera
           aphidicola str. Bp (Baizongia pistaciae)]
          Length = 460

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 131/474 (27%), Positives = 215/474 (45%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  +     L     G              ++ I+ D+R I P+  F A+ G ++D H F
Sbjct: 1   MISI-NLIKLTSITNGILYCSNYATLHSISIHSITTDTRKITPKCLFIALIGKNFDAHMF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A+ KGA  +++            IP   V +   AL K+A   R ++ AT+IAITGS
Sbjct: 60  VNEAISKGAAALLLEKQCYPKNV---IPQIIVQNTTIALGKIASWIRDQTNATVIAITGS 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+ KEM +  L +   T +   + NN+IGVPLTL  +     + I ELG ++  +I 
Sbjct: 117 SGKTSVKEMTSSILKNCGNTISTFQNLNNNIGVPLTLLNLNKSHKYAILELGANYPKDIE 176

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P+IA+I  I  +HL+ F  +  +A AK EIF GL K G    N D +++   K
Sbjct: 177 YTTKITKPNIALINNIYHSHLAGFKSLFGVAQAKQEIFLGLRKNGIAIYNKDSNYWSKWK 236

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                  I     F   KN+          ++ S  ++      + V    +GYH   N 
Sbjct: 237 KNLLTQKIIN---FSIKKNSTIFASNITTSNQGSKFKIHSPNGEIYVTLPLLGYHNISNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    I   +   ++     LS          R +      + T+I+++YNAN ASM  A
Sbjct: 294 LAAATIAISINIPLEIIKIGLS---SLPILKNRLQIIRLNKYKTIINDTYNANTASMIVA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I +L  IS    G ++ V GDM E+G+    +H  +   +   NI+ V+  G     +  
Sbjct: 351 IKILENIS----GYKLFVAGDMLELGKNDVLYHKIIGNTIYNSNINEVFSIGKLSKEISI 406

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEF 468
           A   S   H+    D L   +++ L++  +  ++VK+S S     ++  L++E+
Sbjct: 407 A---SKKGHHFYNSDELLKNLKNKLLNKKIITILVKASRSEKLDVIVEQLIKEY 457


>gi|327312708|ref|YP_004328145.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
 gi|326946102|gb|AEA21987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola F0289]
          Length = 437

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 182/439 (41%), Gaps = 21/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A           VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD--DGRYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQ 265
           K E+++ L+    +     +     L   +       I ++G+ + AD Q          
Sbjct: 194 KGELYDFLKAHDGLLF--LNESNADLMEMAAQREFSRIITYGQDETADVQGNVVSCAPFL 251

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  Q    + EV  H IG +   NML  + I             AL  + P   
Sbjct: 252 KFTWQALSHQPSSGTYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIP--- 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          LI ++YNANP+SM AAI     +    +   +A+LGDM E+G  S
Sbjct: 309 -HNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDK---MAILGDMRELGAAS 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + ++L    I +VWL G      + +  +         ++ +   I     +  
Sbjct: 365 GEEHQKVVDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPENH 418

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K SN    + L  LL
Sbjct: 419 YILIKGSNGIKLFELPALL 437


>gi|262273817|ref|ZP_06051630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
 gi|262222232|gb|EEY73544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Grimontia
           hollisae CIP 101886]
          Length = 454

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 206/470 (43%), Gaps = 24/470 (5%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    L T  D+L       IG      ++ +S D+R++     F A+ G  +D HDF+ 
Sbjct: 1   MISVALTTLQDVL---NAELIGQ--DVTIDAVSSDTRTLGKGALFIALVGERFDAHDFVE 55

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A Q GA  ++V+      +  + +P   V D   AL +L    + +     IA+TGS G
Sbjct: 56  TAKQNGASALLVSK-----VVDIDLPQLVVKDTKLALGQLGAWVKSQCDVKTIALTGSCG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT KEML   LS   +T    G++NN IGVPLTL R+    D+ + ELG +H+GEI + 
Sbjct: 111 KTTVKEMLAAILSQKGQTLYTAGNFNNDIGVPLTLLRLTPFDDYAVIELGANHIGEIAYT 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV+P +A++T +A AHL  F  ++ +A AK EIF+GL   G   +N D +  +     
Sbjct: 171 TSLVKPDLALVTNLAAAHLEGFGSLDGVAQAKGEIFQGLSDGGVAIVNQDSNGGDFWTPA 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T+   GK   AD++                +    +  V   +         +
Sbjct: 231 LEGKQVLTMTVTGK--PADYRAENIHHIDNGCCAFDLVSPDGVYPVRLSLPGEHNVANAV 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I +       T    +           R   +  +    LID+SYNA+ A+MKAA+ 
Sbjct: 289 LAAIAATKIDSRVTMDDVVRGLGSVSPVKGRGAISFPRPGLRLIDDSYNASLAAMKAAVD 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L       +G +I VL DM EMGE + S H D+A  LS  +I  V   G     + +  
Sbjct: 349 LLDSF----DGDKIIVLADMAEMGEHTDSVHEDVAMHLSNASIQTVLTYGLASAVISE-- 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSL--VDGDVVVVKSSNSCGFYRLINLLLE 466
                  + E    L   +   +       V+VK +N      ++  + E
Sbjct: 403 --RCGGQHFEDKSALIAHVVKLMNTKREVSVLVKGANGMKMSEVVAAIEE 450


>gi|94264631|ref|ZP_01288414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93454926|gb|EAT05167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 21/471 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R  +  ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +                        + +      V    +G H   N L   
Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +            L+ + P   R +            LID++YNANP+SM AA++ +
Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLQPFIAGLK---LIDDTYNANPSSMLAALATV 381

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G     +  A   
Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAARH 439

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462
                         + +   ++  +  G     D+V+ K S       +I+
Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|298207680|ref|YP_003715859.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
 gi|83850317|gb|EAP88185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Croceibacter
           atlanticus HTCC2559]
          Length = 422

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 204/437 (46%), Gaps = 25/437 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GIS D+R I     FFA+KG +++G+ +   A+ +GA  VV++ +              
Sbjct: 11  TGISTDTRKIKKDNIFFALKGDNFNGNTYADLAIDQGASYVVIDEEQFKK----DDRYIL 66

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II++TGS GKTTTKE++   L+   KT A +G+ NNHI
Sbjct: 67  VDDVLQTLQELASFHRNYLGIPIISLTGSNGKTTTKELINAVLTKGYKTVATVGNLNNHI 126

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  D + GI E+G +H+GEI  L ++ +P    IT    AHL  F   E + 
Sbjct: 127 GVPLTLLSMSKDTELGIVEMGANHIGEIEMLCNIAQPDYGYITNFGKAHLEGFGSEEGVV 186

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+++ L+    I     +        +         ++FG       +        
Sbjct: 187 IGKSELYKHLKSHDKIVFVNSND-----AKQVDLTKGMKTFTFGL------KQSDVWVSF 235

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +     V++   ++ +  + IG + + N+   + I           ++A+  + P   R 
Sbjct: 236 KNVNPLVEMNLDNLTIKSNLIGVYNSNNIAAAVAIGRYFKISDKHIVEAVENYVPSNNRS 295

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 + +   T++ ++YNANP+SMK A+  L  ++   +    A+LGDM E+G  ++ 
Sbjct: 296 ----QIIKKDNLTILLDAYNANPSSMKVALENLQALNDTPK---YAILGDMFELGASAKK 348

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H+ +A++ +  ++  V L G +   L          +Y+ T + L     S    G  +
Sbjct: 349 EHMSIAKLAASIHLDGVLLVGENFSNL--NFDAPGIAYYTSTKELLENEDFSKYKTG-TL 405

Query: 448 VVKSSNSCGFYRLINLL 464
           +VK S      ++++ L
Sbjct: 406 LVKGSRGMALEQILDKL 422


>gi|262190388|ref|ZP_06048648.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
 gi|262033728|gb|EEY52208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           cholerae CT 5369-93]
          Length = 453

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVERELDAECS-----QLVVADTKQALGQLGSWMHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|78184902|ref|YP_377337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9902]
 gi|78169196|gb|ABB26293.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9902]
          Length = 449

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 129/463 (27%), Positives = 207/463 (44%), Gaps = 24/463 (5%)

Query: 6   TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   L+ A  G  +G    P   +  I  DSRS+   + F  + G ++DGH F+      
Sbjct: 4   TVRQLI-ACWGAPLGPTPDPDMALGRICTDSRSLQTGDFFVPLVGENFDGHSFLGQLSAL 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VV       + S  +  + VDD L A  +LA+  R      ++A+TGS GKTTT+
Sbjct: 63  GAQAAVVEQSWSDPLPS-DLLHWRVDDTLKAYQQLALLHRRSLDQPLVAVTGSAGKTTTR 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E++  AL+ +   +   G+ NN IGVPLT+          + E+GM   GEI  L+    
Sbjct: 122 ELIRAALAPLGDVHCSEGNNNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTE 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVIT I  AH+      E IA+AK EI   L+  G + +   D+  E   +K  +  
Sbjct: 182 PDVAVITNIGTAHIGRLGSREAIAAAKCEITAALKSDGVVVIPAGDALLETALSKVWSGR 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +     +                +    QL+  +  +     G H A+N+L+ L + 
Sbjct: 242 VVRVRLADDTP--------VAADCIGAIDAGQLEVGAHRLPLPLEGRHNARNVLLALAVA 293

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    ++ A+ V  P     +  +  L     TL+DE+YNA+P ++ AA+++L   
Sbjct: 294 D-QLGVDSASLNAMEVSVPGGRNRRLVQGGL-----TLLDETYNASPEAVMAALTLL--- 344

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
                GRR AVLG M E+G  S   H D+A   +   +  + +   G    A+ +A    
Sbjct: 345 -SSQPGRRFAVLGTMLELGAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGL 403

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +    + +     ++  L  GDVV++K+S      RL+ LL
Sbjct: 404 PRLAVVSSPEDAAKPLKEWLRPGDVVLLKASRGVALERLLPLL 446


>gi|146329801|ref|YP_001209874.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
 gi|146233271|gb|ABQ14249.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dichelobacter nodosus VCS1703A]
          Length = 444

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 204/467 (43%), Gaps = 31/467 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   WT  ++   + G+  G         +S D+R++   + F A++G H+ G DF+  A
Sbjct: 1   MIAAWTAKEIATIVGGYLRGND-DWRALEVSTDTRTLTAGQLFIALRGEHFCGEDFLQTA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  V+V          + IP   V+D L AL  LA A R +S A II +TG+ GKT
Sbjct: 60  QERGAVAVIVQE-----YREIDIPQIVVNDTLTALQMLAAARRKQSNAFIIGLTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  KT A +G+ NN IGVPLTL R+  +  F + E+G +H  +I  L  
Sbjct: 115 STKEMLYRILSAQGKTLATVGNLNNDIGVPLTLLRLQNEHRFAVIEMGANHPRDIERLVK 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +AVIT ++ AHL  F  ++ +A+AK+EI+      G + +N D         +  
Sbjct: 175 IVCPDVAVITNVSAAHLQGFGSLDGVAAAKSEIYRFSS--GALVVNADLPQAAAWLQEF- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G ++I +F   ++A +         ++  +    Q   +     G             
Sbjct: 232 --GHRSIQTFALEQSAQWTAADISDNGQRFTLMHLAQRAEIAWQLCGRHNVANALAATAA 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              + ++                       R        TL D++YNANPAS KAAI V+
Sbjct: 290 ASFAGVSLAQSAQALQGLRLQQSRLVALHVR------HHTLYDDTYNANPASFKAAIEVI 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                      + + G M E+G  S + H ++A       I H W     V       P 
Sbjct: 344 -----KTAAHSLVIAGKMGELGAQSAALHAEVAAFAREKGIKHFWAL--SVPDYAAGFPD 396

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLL 464
                  E ++ +   ++  L  G+    V+VK S S    R+I  L
Sbjct: 397 ---ARLFEDVEAVNQALRDIL-AGEKPYTVLVKGSRSARMERVIAAL 439


>gi|238760093|ref|ZP_04621243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
 gi|238701712|gb|EEP94279.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia aldovae ATCC 35236]
          Length = 427

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 132/439 (30%), Positives = 202/439 (46%), Gaps = 18/439 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R + P   F A+KG  +DGHDF        A        +V+    +  P   V D
Sbjct: 2   TIDTRKVTPGCLFVALKGERFDGHDFAED-----AVAAGAGALLVSKRLLVGGPQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGVP
Sbjct: 57  TRLALGQLAAWVRQQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EIF GL   GT  +N D + +   +   H   +      G +++ DF     +  S+ +
Sbjct: 177 GEIFAGLPAKGTAIINADSNDWPHWQETLHHKRVWRFAPHG-AEDIDFFASDVRIASQVT 235

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  +     ++ +     G H   N L    +   + A +    + L+      GR    
Sbjct: 236 YFTLHSPFGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVREGLTQLQAVPGRLFPI 295

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A       L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +   H 
Sbjct: 296 ELAAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDCHR 348

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448
            + E      I  V   G     L DA   S    + +  + L   +   L++  V  V+
Sbjct: 349 QVGEAAKQAGIDKVLSVGTLSQTLSDA---SGCGEHFQDKNTLAARVSELLLEHPVITVL 405

Query: 449 VKSSNSCGFYRLINLLLEE 467
           +K S S     ++  L E+
Sbjct: 406 IKGSRSAAMEDVVRALQEK 424


>gi|305664629|ref|YP_003860916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
 gi|88708646|gb|EAR00882.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Maribacter
           sp. HTCC2170]
          Length = 425

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 129/436 (29%), Positives = 200/436 (45%), Gaps = 27/436 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+++   A++KGA   +V+ +  A+          V 
Sbjct: 16  VCTDTRKIKINCLFFALKGDNFNGNEYADEALKKGASYSIVDEEKYATSDKT----ILVK 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L KLA   R    A +I +TGS GKTTTKE++   LSS  KT A IG+ NNHIGV
Sbjct: 72  DVLQTLQKLATFHRNFYSAKVIGLTGSNGKTTTKELVNAVLSSKYKTIATIGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +H  EI FL  L +P    IT    AHL  F  +E +   
Sbjct: 132 PLTLLTIKEDTEIAIVEMGANHQKEIEFLCSLAQPDYGYITNFGKAHLEGFGSVEGVIEG 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++ L                 L A       K  +   K      +   +K     
Sbjct: 192 KSELYDYLLANQKSI---------FLNADDPIQHKKLGHYIKKYGFTTAKKEYFKIKFLI 242

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S   V L  + +E+    IG +   N    + +      +++    A+  + P+  R + 
Sbjct: 243 SDPYVSLSVEDIEINSKLIGNYNFTNCCAAVLMGKYFNVELNDIKTAIESYIPQNNRSQI 302

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      +I ++YNANP SMK A+   + +S   +   IA LGDM E+G  S   H
Sbjct: 303 IESNGT----RIILDAYNANPTSMKVALENFNSLSGEPK---IAFLGDMFELGATSNEEH 355

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLVDGDVVV 448
            ++A++ S  +IS V+L G +    K  L +       +  + L L++    L     ++
Sbjct: 356 QNIADLTSSLDISEVFLVGDNFYRTKTPLKK------FKNYEALALYLADVELPSNSTIL 409

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      RL+ LL
Sbjct: 410 IKGSRGMALERLLELL 425


>gi|317121704|ref|YP_004101707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591684|gb|ADU50980.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 477

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 119/467 (25%), Positives = 187/467 (40%), Gaps = 16/467 (3%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D+  A  G  +       V G ++DSR + P   FFA+ G   DGH F+  A+  GA   
Sbjct: 7   DVAAATGGRLVAGSQGVTVEGGTVDSRRVRPGNLFFALPGQRVDGHRFVAQALAAGARGA 66

Query: 69  VVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKE 124
           V+   +   +   + P   V  V D   AL  LA    R R+   ++ ITGS+GKTTTKE
Sbjct: 67  VIARPLAEVLPDGAPPGTAVVEVADTRQALADLARWVRRRRTGLRVVGITGSLGKTTTKE 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+         G+YN  +G+PLTL  +       + E+ M  LGEI  L  +  P
Sbjct: 127 MAAAVLARRFAVLKSAGNYNTDVGLPLTLLDLEERHQVAVLEMAMRGLGEIARLAAIAEP 186

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + V+T +A +HL     +E +A AK E+ E L + G   LN  D       A      +
Sbjct: 187 DVGVVTVVAESHLEFLGSLERVAQAKGELVEALPEDGVAILNAGDPRVRA-MAARTRARV 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T    G+  +      + +  +   +      G +  V     G       L    +  
Sbjct: 246 LTFGHDGEGADVRAVNVEHRGAAGSRFRLEVPGGDAATVELAVPGPAAVTCALAAAAVGV 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D  T    L+   P   R +  +     G +TL  + YNA+P S +AA+  L Q++
Sbjct: 306 ALGLDAATIAAGLAEARPAALRNEIRQ----AGPWTLYIDCYNASPTSTRAALHALRQVA 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA----LPR 420
             G  R +A+LGDM E+G+ +   H +     +      +   G     + +        
Sbjct: 362 --GSRRAVAILGDMFELGDWAVEGHRETGREAART-ADVLLAVGRWAPQMVEGWIQAGGA 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                       L   +   L  GD +++K+S       ++  L   
Sbjct: 419 GAAAAAYPDKAALLGELDRWLRPGDAILIKASRGMAMEEVVEALTAR 465


>gi|72161510|ref|YP_289167.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
 gi|71915242|gb|AAZ55144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermobifida fusca YX]
          Length = 470

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 121/478 (25%), Positives = 193/478 (40%), Gaps = 25/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +  +    G   P   V+G + IDSR  AP   F A++G   DGHDF  
Sbjct: 1   MIAL-TLDRIAKITRSRLRGSAQPTDTVDGPVVIDSREAAPGSLFVALRGSRVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV---DDVLGALNKLA--VAARLRSKATIIAI 113
            AV+ GA  V+ +         +  P   V   DD + A               A II +
Sbjct: 60  AAVRAGATAVLCSRP-------VDAPHLLVDGGDDAVVAALAKLARAVVAELPDADIIGV 112

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L   L  I  T A  GS+NN IG PLT+ R      F   E+    +G
Sbjct: 113 TGSSGKTTTKDLLAQTLQRIGPTVAPPGSFNNEIGHPLTVLRADQTTRFIALEVAARGVG 172

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I  L  +  P I V+  +  AH+  F   + IA AK E+ E L       +   ++  +
Sbjct: 173 HIAHLCQIAPPRIGVVLNVGSAHMGEFGSRDTIAQAKGELVEALPAAAQGGVAVLNADDD 232

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHM 292
            +     +     + S+G + +AD +               + +   +  V    +G H 
Sbjct: 233 AVIG-MASRTAARVVSYGLAPDADVRAEGIALDERGRPRFTLAIGEDTAPVSLRLVGTHQ 291

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L    ++  L   V     ALS   P      R          T+++++YNANP S
Sbjct: 292 VHNALAVAAVLRELGEPVTAIAAALSEAGPV--SRWRMEVTERPDGVTIVNDAYNANPES 349

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+  L+ ++     R  AVLG M E+G   ++ H  +  +++   +  +   G    
Sbjct: 350 MSAALRTLATLAS--GRRAFAVLGHMAELGSAHRTEHERIGRLVTESGVDVLITVGEQAA 407

Query: 413 ALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++ D                 +      ++  L   D+V++K S   G  ++   L++
Sbjct: 408 SIADGAASVADWKGETVTVADVTEAVAVLKERLRPKDIVMLKGSRVAGLEQVAEQLID 465


>gi|291457561|ref|ZP_06596951.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380614|gb|EFE88132.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium breve DSM 20213]
          Length = 481

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 203/484 (41%), Gaps = 26/484 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ +  ++ +A+ G  + G  P         DSR       F AIKG   DGH F+  
Sbjct: 1   MVPM-SVEEIAKAVDGRLVAGDGPAIEATETVTDSRQAGSGAVFVAIKGERVDGHGFVDK 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRSKA--TIIAIT 114
              +GA   +V+ ++       ++P   V+D + AL  LA      R +      +I +T
Sbjct: 60  VADQGAAAAIVDHEVAC----TTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTTK++L+  LS++  T A IGS+NN IG+PLT  R+  D  F + E+G +H+GE
Sbjct: 116 GSVGKTTTKDLLSALLSTLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGE 175

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  LT +  P+  ++  +  AHL  F   E IA AK+EI +GL   GT  LN DD +   
Sbjct: 176 IARLTRIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVP 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +   +    +       +                  +      G+ + V     G H   
Sbjct: 236 MAQFASGDVLWFGQGHTRDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVM 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASM 353
           N L    +       +    + L+  H              Q   F LID+S+NANP SM
Sbjct: 296 NALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDSM 355

Query: 354 KAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-- 409
           KA +  L   + +   +   V  LG M E+G   +  H  + E  +   +  +   G   
Sbjct: 356 KAGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVGSPS 415

Query: 410 ------HVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVD--GDVVVVKSSNSCGFYR 459
                    +L +     R+  V   +T+D     +     +    VV++K S++ G   
Sbjct: 416 DAHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVFDLAKNHTDTVVLLKGSHASGLSA 475

Query: 460 LINL 463
           L   
Sbjct: 476 LAER 479


>gi|325860151|ref|ZP_08173276.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
 gi|325482238|gb|EGC85246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella denticola CRIS 18C-A]
          Length = 437

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/439 (26%), Positives = 183/439 (41%), Gaps = 21/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+QKG    VV+    A           VD
Sbjct: 16  VTTDSRDCPQGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEKEYAKAD--DGRYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  LS     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFPIPVIGITGTNGKTTSKELISAVLSEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVKYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----LRKWKQ 265
           K E+++ L+    +    + +    L   +       I ++G+ + AD Q          
Sbjct: 194 KGELYDFLKAHDGLLFLNESNV--DLMEMAAQREFSRIITYGQDETADVQGNVVSCAPFL 251

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                 +  Q    + EV  H IG +   NML  + I             AL  + P   
Sbjct: 252 KFIWQALSHQPSSGTCEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQVCHALENYIP--- 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          LI ++YNANP+SM AAI     +    +   +A+LGDM E+G  S
Sbjct: 309 -HNNRSQLTETAHNRLIVDAYNANPSSMAAAIENFRLMQVKDK---MAILGDMRELGTAS 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H  + ++L    I +VWL G      + +  +         ++ +   I     +  
Sbjct: 365 GEEHQKVIDLLKNTGIDNVWLVGEEFGKTRTSFRK------FHDVEEVKAEIARCRPENH 418

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K SN    + L  LL
Sbjct: 419 YILIKGSNGIKLFELPALL 437


>gi|325295150|ref|YP_004281664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065598|gb|ADY73605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 435

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 205/465 (44%), Gaps = 31/465 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++ + ++G  IG    G VN I  DSR++     F  ++G   DGH FI  A Q G
Sbjct: 1   MRAEEVAKIVKGKLIG---NGKVNSIEFDSRNVKKGSLFVPLRGNR-DGHQFIKDAFQNG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +    G     +  V +   A   L    R     T IAITGSVGKTTTKE
Sbjct: 57  ASGTLSERTLPIPEGKF---LIEVKNTFEAFKLLGKWKRGNFNGTTIAITGSVGKTTTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +LT   S   KTY  + S+NN +G+  TL+ +P+D +  I ELG +  GEI  L  +V+P
Sbjct: 114 LLTHVFSKFFKTYRNVKSFNNILGLTYTLSNLPLDTELYIQELGTNRQGEIPELVEIVKP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+V+T +  AH + F  I +I   K  I EG                  +         
Sbjct: 174 EISVVTAVEKAHTAGFKDISDIVKEKLSITEG--------------AILSIVPIQFKEFS 219

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K+  +    +  D +L   +    ++   ++  G+ ++      G  +  + L+ +G+  
Sbjct: 220 KSKETITFGREGDIKLLDVQLFPNKTEFLIESFGRRLQFFSPIPGLGVVNSTLIAVGLAE 279

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   +++   + +  F P E R              LID+SYNANP SM+ AI VLS   
Sbjct: 280 VFKVNIEKVSELIRTFTPPEMRL----TVEQLNKVILIDDSYNANPKSMENAIKVLSL-- 333

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              E  ++A++G+M E+GE S+  H  + E+L+   +  +   G    +           
Sbjct: 334 --QELPKVAIIGEMLELGEESKKEHEKIGELLNHAKVETLIAYGKETESTFKVFKGKKS- 390

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            Y  + + L  FI++    G  V+VK S      ++  ++ E + 
Sbjct: 391 -YFTSQEELIKFIKTFHFQGKAVLVKGSRGNRLEKIARIIRERYK 434


>gi|325953852|ref|YP_004237512.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
 gi|323436470|gb|ADX66934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/
           D-alanyl-D-alanyl ligase [Weeksella virosa DSM 16922]
          Length = 444

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 200/435 (45%), Gaps = 21/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R I     FFA+KG  ++G+ F   A+ KGA +VVV+             +  V 
Sbjct: 31  VTTDTRKITQNAIFFALKGEKFNGNLFAKEALDKGASIVVVDEP----QNLQDDRIILVK 86

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L +L  LA A R   +  +I +TGS GKTT+KE++   L    + +   G+ NNHIGV
Sbjct: 87  NGLESLQALARAYRSTLRIPVIGLTGSNGKTTSKELIAAVLQEKFQVHYTQGNLNNHIGV 146

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +P +    + E+G +HL EI  L+ + +P +  +T    AHL  F G E +   
Sbjct: 147 PLTLLSIPENAQIAVIEMGANHLKEIELLSSIAQPDLGYVTNFGHAHLEGFGGFEGVVKG 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E++  L +     L   D   +L      A  +++  SF K+++         + +  
Sbjct: 207 KSELYNFLHEHHKTVLINADDPLQL----QQAKAVESQISFSKNESTQATYCIELKENVN 262

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++V ++   +     G            +                +  ++P   R + 
Sbjct: 263 NKIQVVVEDVVIRSNLTGNYNWSNVAA--AISFGKHFGLSPKEIKNGIENYYPANHRSQL 320

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +    +  +TL+ ++YNANP+SM+A+++  S      +G +  +LGDM E+GE S+  H
Sbjct: 321 IQ----KDKYTLLMDAYNANPSSMEASLNNFSTF----DGSKTVILGDMFELGESSKVNH 372

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A++        ++L G +   ++        + + E  D L  +++   ++   +++
Sbjct: 373 QKIAQLTKDLGFEKIYLVGNNFSKIEGDFSD---IQFFEDRDSLVNYLKKHPIETKNILI 429

Query: 450 KSSNSCGFYRLINLL 464
           K S+      L N L
Sbjct: 430 KGSHGMRLDLLENEL 444


>gi|300173742|ref|YP_003772908.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299888121|emb|CBL92089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 441

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 124/449 (27%), Positives = 204/449 (45%), Gaps = 32/449 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G + G++ +S+ +   + F A+   + DGH++I +A+  GA  V+V+   V    +  I
Sbjct: 19  NGLITGVAFNSQQVTTGDLFVALVMDN-DGHNYIQNALDNGAAAVLVDNKHV---INTKI 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   VDD L AL +L    R +   TIIAITGS GKTTTK+ML   +++  +T+    ++
Sbjct: 75  PAIIVDDTLIALQQLGKYQRNQINPTIIAITGSNGKTTTKDMLFSIMATTYRTFKTPENF 134

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL  MP + +  + ELGM   G++  L+ LVRP +A+IT I  AH+  F   
Sbjct: 135 NNEIGVPMTLLMMPENTEVLVVELGMDRPGQLTVLSRLVRPDVAMITMIGEAHIEFFKTR 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA AK EI  GL+  G +F+ +D+                             Q+  +
Sbjct: 195 ANIARAKLEIVSGLKSDGVLFIPFDEPLL-------------------TEAIVQRQVILF 235

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q                +     I      N++  L  +S          K        
Sbjct: 236 GQGVNNIEAFSDHTMFVYQNTQFAIPLIGGYNIMNALAAISAGILLHIDLKKVAKALQTF 295

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R    +      LI + YN+NP ++ A ++ L  I       +  VLGDM E+G+
Sbjct: 296 DLTKNRTERLVTARGVVLISDVYNSNPTAVAAVLATLKAIPAP---HKYVVLGDMLELGD 352

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGF----HVLALKDALPRSIHVHYSET--MDGLFLFI 437
            +   H +L + +    +  V+L G     ++  +  A   S+  H   T  +D L L +
Sbjct: 353 QANKLHANLGQKVLDSGVDGVYLVGPLLNKNMAPIIQAHIDSVDFHQYATDQLDQLRLDL 412

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           Q+    GDV+++K+S+      ++N L++
Sbjct: 413 QTLGEKGDVILLKASHGIHLETVVNALMK 441


>gi|238761553|ref|ZP_04622528.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
 gi|238700067|gb|EEP92809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia kristensenii ATCC 33638]
          Length = 427

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 131/439 (29%), Positives = 208/439 (47%), Gaps = 18/439 (4%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           +ID+R + P   F A+KG  +DGHDF   A+  GAG ++V+  ++        P   V D
Sbjct: 2   TIDTRQVTPGCLFVALKGERFDGHDFAEDAIAAGAGALLVSKRLLVE-----APQLVVKD 56

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL +LA   R +  A ++A+TGS GKT+ KEM+   L    K     G++NN IGVP
Sbjct: 57  TRLALGQLAAWVREQVPARVVALTGSSGKTSVKEMVAAILRQCGKVLYTAGNFNNDIGVP 116

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  +A AK
Sbjct: 117 LTLLRLTPEYDFAVIELGANHIGEIAYTTDLSRPESALVNNLAAAHLEGFGSLAGVAQAK 176

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EIF GL   GT  +N D + +   +   H   +      G +++ DF     +   + +
Sbjct: 177 GEIFAGLPANGTAIINADSNDWPHWQETLHNKRVWRFSPHG-AEDIDFFASDVRITPKTT 235

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  +     ++ +     G H   N L    +   + A +    + L+      GR    
Sbjct: 236 YFTLHSPLGTVAIELPLPGRHNIANALAAAALAMSVGASLAAVRQGLTQLQAVPGRLFPI 295

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             +       L+D+SYNAN  SM AA  VL+++     G R+ V+GDM E+GE +   H 
Sbjct: 296 ELSAG---KLLLDDSYNANVGSMTAAAQVLAEMP----GYRVMVVGDMGELGETAVDCHR 348

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448
            + +      +  V   G    AL +A   S    + +  + L   +   L++  V  V+
Sbjct: 349 QVGDAAKQAGVDKVLSVGVLSQALSEA---SECGEHFQDKNTLTARVSELLLEHPVITVL 405

Query: 449 VKSSNSCGFYRLINLLLEE 467
           +K S S     ++  L E+
Sbjct: 406 IKGSRSAAMENVVRALQEK 424


>gi|94266850|ref|ZP_01290510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
 gi|93452480|gb|EAT03079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [delta
           proteobacterium MLMS-1]
          Length = 496

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 21/471 (4%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+WT   +L A  G   G   Q     IS DSR+I   + F A++G ++D   F+  AV
Sbjct: 31  NPVWTLSQVLLATGGRLWGDRTQAAFRLISTDSRTIEAGDLFVALRGENFDAQQFVAEAV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
            KGA  +V+    V  +    + V    D L AL  LA   R R  +  ++AITGS GKT
Sbjct: 91  AKGAAGLVLEQPPVEPVPVPVVLV---PDTLAALGDLAHYRRCRMRELQVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L   ++     G+ NN +G+PL+L  +     F + E+GM+  GEI  +  
Sbjct: 148 TVKEMTATILQRRQQVLKTRGNLNNLVGLPLSLLPVEHSHRFAVLEMGMNRPGEIARMAE 207

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P IA IT +  AHL+  + ++ +A AK E+F GL   G + +N DD     L A++ 
Sbjct: 208 IALPDIACITNVQEAHLAGLADVQGVARAKGELFAGLPAWGKLVVNLDDKRVRRLAARTG 267

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +                        + +      V    +G H   N L   
Sbjct: 268 QQRITYGRT---RNARVRATYIRSLGEAGMSFTLTIDDWRQRVRLAALGEHNVSNALAAA 324

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +            L+ + P   R +            LID++YNANP+SM AA++ +
Sbjct: 325 ALATAAGVSPAEIAAGLAAYRPFAKRMQLLPFIAGLK---LIDDTYNANPSSMLAALATV 381

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    + R +AVLGDM E+GE S + H  +   ++  +  ++   G     +  A   
Sbjct: 382 HNLR--RQRRVVAVLGDMLELGEQSVAAHRFIGGEVARLDFDYLLAVGEFAHQVVAAARH 439

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDG-----DVVVVKSSNSCGFYRLIN 462
                         + +   ++  +  G     D+V+ K S       +I+
Sbjct: 440 RGMAAARTAACADKEEIVARLRRMVDAGELAADDIVLFKGSRGMRMETIID 490


>gi|145588351|ref|YP_001154948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145046757|gb|ABP33384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 481

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/491 (24%), Positives = 194/491 (39%), Gaps = 33/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M+ + T   +   + G  +            +  +  DSR I   E F A+ G  +D HD
Sbjct: 1   MSAMTTLAQVHAMLPGSILVNISLEAAQALSITRVGTDSRQIDAGELFVALAGERFDAHD 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F+      GAG  +++          ++P   ++D   AL +LA A R+     +  +TG
Sbjct: 61  FLSDVASSGAGAALISNK---DKCPKNLPAVCIEDTRAALGQLAKAWRVTRHIPLALVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           S GKTT KEM+     +           G+ NN IG+PLTL ++       + ELGM+H 
Sbjct: 118 SNGKTTVKEMIASIFKAAVGESHTLVTKGNLNNDIGLPLTLLKLRPTDQLAVVELGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE   L  + + +IA+I      H    + +  +A   A++   L + G      D  F 
Sbjct: 178 GETALLADIAQANIALINNAQREHQEFMATVAAVAQEHADVIRALPQDGIAVFPGDSEFT 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           +L +  +    +          NA   +           +EV  +  S+++  + +G H 
Sbjct: 238 DLWRKAAADRKVLDFVLSSTQTNASSAVGGKLL--NDGRIEVNTENGSIQIQLNTLGNHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L    +       +    + L  F P  GR    +        TLID+SYNANP S
Sbjct: 296 VRNALAASAVAIAAGISLKKIQEGLESFQPVNGR---MQAKTIDANHTLIDDSYNANPDS 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++AAI  L             VLGDM E+G+    FH ++    +   IS ++  G    
Sbjct: 353 VRAAIDALK----QSGNNAWIVLGDMGEVGDQGPEFHQEVGAYAAEQGISKLFALGEQCQ 408

Query: 413 ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDV-------VVVKSSNSCGFYR 459
                   +          +   MD L   ++ +L    +       ++VK S      R
Sbjct: 409 FAIQGFESAKGKSALSSATHFSNMDSLIAQLRDALHAQALGTNQHLNILVKGSRFMRMER 468

Query: 460 LINLLLEEFPA 470
           ++  LLEE  A
Sbjct: 469 VVQALLEEAKA 479


>gi|261211503|ref|ZP_05925791.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
 gi|260839458|gb|EEX66084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC341]
          Length = 453

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 137/473 (28%), Positives = 212/473 (44%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      ++ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--ADRAISAVSTDSRTIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + K   +AITGS GKT
Sbjct: 58  VIGGAVALLVEHELDA-----DCSQLVVADTKQALGQLGAWVHTQCKTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  IE +  AK EI++GL +     +N D +  E    K+ 
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIEGVKRAKGEIYQGLREGAVAIVNLDSNGGEHW--KTV 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                         NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 231 LADKTVKTFSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR        +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIAHGLAHLSKVKGRVDLTHLRDDI---TLIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + ++   V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|284929329|ref|YP_003421851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
 gi|284809773|gb|ADB95470.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [cyanobacterium UCYN-A]
          Length = 458

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 207/479 (43%), Gaps = 37/479 (7%)

Query: 5   WTFHDLLQAIQGHS--------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
              ++L+  +  +         +       V  I+ D+R I   + F A+ G ++DGH F
Sbjct: 1   MNVNELVTVLGSNFQKQKSYFNLSSFDDIKV--INTDTREIQKGDVFIALSGKNFDGHLF 58

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KGA +V++  + + +  +  +    V   L A  ++A   R + K  IIAITGS
Sbjct: 59  IREAIEKGASIVILEQEALVNS-TYKVSHIVVGSALKAYQQIANWWRNKYKIPIIAITGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTTTKE++  +L    + +    +YNN IGVP TL ++    D+ + E+GM  L EIR
Sbjct: 118 VGKTTTKELIAASLGMYGQVHKTYDNYNNEIGVPRTLLKLSKHHDYAVIEMGMRDLEEIR 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT +++P I +IT I  AH+      E IA AK E+   +       LN DD       
Sbjct: 178 LLTKIIQPTIGIITNIGTAHIGRLGSKEAIAQAKCELLSEMSLDSIAILNNDDELLMKTA 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +       T                      +   +  L+ + +       G H A N 
Sbjct: 238 MRIWKGKTIT------------YGLNKGDIIGKLINDRTLRVEGLNFPLPLSGRHNAINY 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   L  D     K +      E    R +     G   L+DE+YNA   SM   
Sbjct: 286 LAALAVTKSLNLDWKKFTKQIK----VEMPQGRSQKNYLPGDIILLDETYNAGLESM--- 338

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLAL 414
            + L+ +      R IAVLG M E+G  S  FH ++ E      I  +++        A+
Sbjct: 339 KAALNMLKDTPGKRHIAVLGAMKELGVNSSQFHREVGETAQALGIDVLYILIRDEEARAI 398

Query: 415 KDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + +      R+I V    + + LF  + + + +GD ++ K+SNS     L+  + + F
Sbjct: 399 PNGIKNIDGVRNIKVICCLSPEKLFEQLINDISEGDRILFKASNSVKLKSLVEQICKYF 457


>gi|107099999|ref|ZP_01363917.1| hypothetical protein PaerPA_01001020 [Pseudomonas aeruginosa PACS2]
          Length = 449

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 132/456 (28%), Positives = 197/456 (43%), Gaps = 22/456 (4%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A+    IG       + +S DSR+I P + F A+ GP +DGHD++     KGA  V+V  
Sbjct: 4   ALDARLIG--EDAVFSAVSTDSRAIGPGQLFIALSGPRFDGHDYLAEVAAKGAVAVLVER 61

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS- 131
           ++  +     +P   V D   AL +L    R +    + A+TGS GKTT KEML   L  
Sbjct: 62  EVADAP----LPQLLVRDTRAALGRLGALNRRKFTGPLAAMTGSSGKTTVKEMLASILRT 117

Query: 132 ---SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                +   A  G+ NN +GVPLTL ++       + ELG S +GEI +   L RPH+A+
Sbjct: 118 QAGDAESVLATRGNLNNDLGVPLTLLQLAPQHRSAVIELGASRIGEIAYTVELTRPHVAI 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT    AH+  F G E+I  AK EI EGL   GT  LN DD  F+  KA+  A G   + 
Sbjct: 178 ITNAGTAHVGEFGGPEKIVEAKGEILEGLAADGTAVLNLDDKAFDTWKAR--ASGRPLLT 235

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                  ADF+    ++ +                V   +         +     +    
Sbjct: 236 FSLDRPQADFRAADLQRDARGCMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALG 295

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                I A              +  L      +ID+SYNANPASM AAI +LS  S    
Sbjct: 296 VPLDGIVAGLQALQPVKGRAVAQ--LTASGLRVIDDSYNANPASMLAAIDILSGFS---- 349

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           GR + VLGDM E+G  ++  H ++    +   +S ++  G  +     A   +    +  
Sbjct: 350 GRTVLVLGDMGELGSWAEQAHREVGAYAA-GKVSALYAVGPLMAHAVQAFGATGR--HFA 406

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               L   + +       +++K S S    +++  L
Sbjct: 407 DQASLIGALATE-QPTTTILIKGSRSAAMDKVVAAL 441


>gi|291003735|ref|ZP_06561708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 487

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 128/493 (25%), Positives = 195/493 (39%), Gaps = 40/493 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  D+ +A+ G          V+  +  DSR +AP   F A+ G   DGHDF   
Sbjct: 1   MIRL-SLADIAEAVGGRLHRADGSEIVSASVEFDSRKVAPGGLFVAVPGERVDGHDFAAR 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------LGALN----------------K 97
           AV  GA  V+   +       +  P   V  V      L AL                  
Sbjct: 60  AVADGAAGVLAARE-------VDAPAVIVPPVPAEATGLMALAGDTDGSGAAVLAALARL 112

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                    + T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T  R  
Sbjct: 113 ARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQLLEPMGPTVAPPGSFNNELGHPWTALRAD 172

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D    + EL    +G I  L  +  P I  +  +  AHL  F   E +A AK E+ E L
Sbjct: 173 EDTRHLVLELSARGVGHIAKLCEVAPPRIGAVLNVGHAHLGEFGSQEAVARAKGELVESL 232

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   LN DD     + +++ A  +    S G    A+  +   +     +       
Sbjct: 233 PADGVAVLNADDPLVAAMASRTRARVVLVGESPGAHVRAEDIVLDEQARPSFTL---VAP 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S +V     G H   N L    I   L A ++     LS       R  R   A    
Sbjct: 290 QGSAQVSLPLHGEHHVGNALSAAAIALELGATLEQVADRLSGVRRVSAR--RMEVAETAD 347

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+++++YNANP SM+AA+  L+ ++    GR  AVLG M E+GE     H ++  +  
Sbjct: 348 GVTVVNDAYNANPESMRAALKTLASMTRGRPGRAWAVLGVMGELGESGAQAHDEIGRLAV 407

Query: 398 LYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
             NI  + + G     +                   +D     +++ L  GDVV+ K+S 
Sbjct: 408 RLNIDRLVVVGDQAAGMHHGASLEGSWGEESVLVPDVDAAVALLRAELRPGDVVLAKASK 467

Query: 454 SCGFYRLINLLLE 466
               +R+   L+E
Sbjct: 468 VAALWRVAEALIE 480


>gi|332288556|ref|YP_004419408.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
 gi|330431452|gb|AEC16511.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D- alanine ligase
           [Gallibacterium anatis UMN179]
          Length = 464

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 126/469 (26%), Positives = 209/469 (44%), Gaps = 28/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A          +  V+ ++ DSR+      FFA++G  +D H F+    Q+GA 
Sbjct: 9   LSELLSA--KEVNPPSAELEVDKVTTDSRTDCCGSVFFALRGESFDAHRFLAQVSQQGAK 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++VV     A    +S+P   V +   AL +LA+  R +    + A+TGS GKTT KEM 
Sbjct: 67  ILVVEHADPA----VSVPQLVVANTKKALGQLALWVRQQVNPKVAAMTGSSGKTTVKEMT 122

Query: 127 T----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                    +  +     G++NN IGVPLTL R+     F + ELG +H GEI + T L 
Sbjct: 123 AAILQQTAKNADEVLFTAGNFNNDIGVPLTLLRLTDQHRFAVIELGANHAGEIAYTTQLA 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A++  +APAHL+ F  ++ +A AK EI++GL + G   +N D ++  + +      
Sbjct: 183 RPDVALVNNVAPAHLAGFGSLQGVAKAKGEIYQGLTENGIAVINQDCNYLPMWQQNIAQH 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            IK          AD   R  +  +      +      +E+    +G H   N L    +
Sbjct: 243 PIKR--FSLTHSEADIYARAIQHTNIGFSFVLCTPQGEIEIELPYLGLHNVSNALAAASL 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L A +D   K L++    +GR             TL+D++YNAN  S+    + +S 
Sbjct: 301 AIALGATLDDVKKGLALGKRVKGRLFPIEV---NSQLTLLDDTYNANVDSL---KAAISV 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +    +  ++ V+GDM E+GE ++  H  +AE     N+  V   G +   +      + 
Sbjct: 355 LYSAPQQVKVLVVGDMAELGESTEQCHRQVAEAALNANLDQVMSFGQYSRVISQ----TC 410

Query: 423 HVHYSETMDGLFLFIQSSL----VDGDV--VVVKSSNSCGFYRLINLLL 465
              + +    L   +Q         G    ++VK S S    ++I+   
Sbjct: 411 GGKHYQDKAELIADLQQYAAQQMKAGKTILILVKGSRSMRMEQVIDSFK 459


>gi|306836494|ref|ZP_07469466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304567628|gb|EFM43221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 509

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 132/514 (25%), Positives = 208/514 (40%), Gaps = 58/514 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+     G   G   P   V G +  DSR +     F A+ G   DGHDF  
Sbjct: 1   MIPL-SIGDIAAITGGSLDGVDDPDERVTGFVEFDSRKVTTGSLFVALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94
            A+++GA  V+           + +P   V                          V+GA
Sbjct: 60  KAIEQGAVAVLAARP-------VGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ LA     R        I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P
Sbjct: 113 LSDLAREVTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R      F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232

Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            E+ E L      G   LN DD F   +  ++ A  +    +  ++ +A +     +   
Sbjct: 233 GELIEALPAAADGGVAVLNADDPFVSSMAPRTQAKVVYYSANRPQAADAQYYATDIELDD 292

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                          +      +   Q         + + + V+ A+ A ++   +    
Sbjct: 293 VARPSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPAVVARALSGHQTSSA 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
            R      +   T+ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + 
Sbjct: 353 HRMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAV 412

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLV- 442
             H  L  VLS Y++ ++   G      A+ +A     I       ++     +++ L  
Sbjct: 413 EAHRILGSVLSKYHVDYLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRV 472

Query: 443 ------------DGDVVVVKSSNSCGFYRLINLL 464
                         DVV+VKSSN+   +R+   L
Sbjct: 473 APAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|320540409|ref|ZP_08040059.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
 gi|320029340|gb|EFW11369.1| putative UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Serratia symbiotica str. Tucson]
          Length = 453

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 132/471 (28%), Positives = 207/471 (43%), Gaps = 21/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ +   L + +    IG      +  +  D+R +     F A+KG  +D HDF    
Sbjct: 1   MIPV-SLLVLAEILSAELIG--ADSQIIEVKTDTRKVTAGCLFVALKGERFDAHDFAAA- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V+   +L  P   V D   AL +LA   R +  A ++++TGS GKT
Sbjct: 57  ----AVAAGAGALLVSQRLALDAPQLVVADTRLALGQLAAWVRQQVPARVVSLTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS   +     G++NN IGVPLTL R+    DF + ELG +H+GEI + + 
Sbjct: 113 SVKEMTAAILSECGEVLYTAGNFNNDIGVPLTLLRLQPQHDFAVIELGANHIGEIAYTSA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A+I  +A AHL  F  +  +A AK EIF GL   G   +N D++ +   ++   
Sbjct: 173 LARPQAALINNLAAAHLEGFGSLAGVAQAKGEIFTGLPTDGVAIINADNNDWPHWQS-ML 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S   +   +F   + +     +  ++     S E+V    G H   N L   
Sbjct: 232 DGKTVWCFSPQATAGVEFFASEVRGDGNGTQFQLHSPFGSAEIVLPLPGRHNVANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +    + LS      GR      A N     L+D+SYNAN  SM  A  VL
Sbjct: 292 ALAMSVGASLKAVRQGLSQLQAVPGRMFPIVLAAN---KLLLDDSYNANVGSMTTAAQVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +++     G R+ V+GDM E+G  +Q  H  + E      I  V   G     L  A   
Sbjct: 349 AEMP----GYRVMVVGDMDELGAEAQECHRQVGEAARRAGIDKVISVGGLSRVLSVA--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLEEFP 469
           S +  + +    +   +   L + +V  V++K S      +++  L E+ P
Sbjct: 402 SGNGEHYQDKAAVIARVAELLAEHEVMTVLIKGSRRAAMEQVVCALQEKTP 452


>gi|288803774|ref|ZP_06409202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
 gi|288333761|gb|EFC72208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           melaninogenica D18]
          Length = 440

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 185/442 (41%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A++KG    +++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDE--RYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+     +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262
           K E+++ L+  G +     +     L   +       I ++G+ + AD            
Sbjct: 194 KGELYDFLKAHGCLLF--LNESNPDLTEMAEQRAFDRIITYGQDETADVQGYVVSCAPCL 251

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             +    S    Q      EV  H IG +   NML  + I             AL  + P
Sbjct: 252 KFEWQSSSLNTHQPAPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYVP 311

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                             LI ++YNANP+SM AAI     +    +   +A+LGDM E+G
Sbjct: 312 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFQLMEVENK---MAILGDMRELG 364

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + S   H  + E+L   +I +VWL G      +    +         +D +   I     
Sbjct: 365 DASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFLK------FRDIDEVKKEIALHRP 418

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN    + L  LL
Sbjct: 419 EDHYILIKGSNGIKLFELPALL 440


>gi|290961152|ref|YP_003492334.1| UDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
 gi|260650678|emb|CBG73794.1| putativeUDP-N-acetylmuramoyl-tripeptide--D-alan yl-D-alanineligase
           [Streptomyces scabiei 87.22]
          Length = 471

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 116/473 (24%), Positives = 183/473 (38%), Gaps = 19/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR + P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIADVVGGQTHDIPDPSAQVTGPVVRDSREVVPGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   V DV  AL  LA     +   T++A+TGS G
Sbjct: 60  -------AVVEAGAAAVLASRPVGVPAIVVPDVQAALGALARHVVRKLGTTLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLVAQVLRRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P I ++  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 173 TGLTPPKIGLVLNVGTAHIGEFGGREQIAQAKGELVEALPSAEEG-GAAILNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG+S  AD +               +L   S         Y        
Sbjct: 232 MASRTKARVILFGESGEADVRAENVTLTDAGQ-PAFRLHTPSGASDVTMRLYGEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +  +  A ++         R          T+++++YNANP S     +
Sbjct: 291 LAAAAVAHELGMSVSEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPES--MRAA 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
           + +  +     R  AVLG M E+G+ + + H  +  +    N+  +    G     L   
Sbjct: 349 LRALAAMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVGKLVAVGGREASWLQLG 408

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +         +          ++S L  GDVV+VK+S S G   +   LL+
Sbjct: 409 AYNEGSWGEESVHVSDAQAAIDLLRSQLRPGDVVLVKASRSVGLESVAQALLD 461


>gi|302345941|ref|YP_003814294.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
 gi|302149087|gb|ADK95349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella melaninogenica ATCC 25845]
          Length = 469

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 184/442 (41%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A++KG    +++    A  G        VD
Sbjct: 45  VTTDSRNCPEGSIFVALKGASFDGNKFAEAALEKGCSYAIIDEKEYAKAGDE--RYILVD 102

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+     +    +YNN +GV
Sbjct: 103 DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISAVLAEKFNVHHTEANYNNDVGV 162

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 163 PRTLLGIRPEHEIAVIEMGASHPGDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKKT 222

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262
           K E+++ L+  G +     +     L   +       I ++G+ + AD            
Sbjct: 223 KGELYDFLKAHGCLLF--LNESNPDLTEMAEQRAFDRIITYGQDETADVQGYVVSCAPCL 280

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             +    S           EV  H IG +   NML  + I             AL  + P
Sbjct: 281 KFEWQSSSLNTHHPSPTIYEVQTHLIGSYNLDNMLAAIAIGLHFGVTPQQINYALENYVP 340

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                             LI ++YNANP+SM AAI     +    +   +A+LGDM E+G
Sbjct: 341 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFQLMEVENK---MAILGDMRELG 393

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           + S   H  + E+L   +I +VWL G      +    +         +D +   I     
Sbjct: 394 DASAEEHQKVVELLKATDIRNVWLVGEEFGKTQTDFRK------FRDIDEVKKEIALHRP 447

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN    + L  LL
Sbjct: 448 EDHYILIKGSNGIKLFELPALL 469


>gi|298489991|ref|YP_003720168.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
 gi|298231909|gb|ADI63045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase ['Nostoc
           azollae' 0708]
          Length = 454

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 203/465 (43%), Gaps = 29/465 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQ--GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T   L++ +   S+ +       V+  I  D+R + P E F A++G  +DGH+F+  A+ 
Sbjct: 6   TLSQLVEILSASSVNLSASALTKVSKSIQTDTRILQPGEVFVALRGEKFDGHEFVAMAIV 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V+      +     PV  V D L A  ++    R      +I +TGSVGKTTT
Sbjct: 66  KGAIAAIVDYAYENPV----FPVLQVTDTLKAYQQIGRWWRDSYSIPVIGVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L++  + +   G++NN IGVP TL  +  + DF + E+ M   G+I  LT + 
Sbjct: 122 KELIAAVLATKGQVHKTYGNFNNEIGVPKTLLELGAEHDFAVIEMAMRGRGQIAELTQIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT +  AH+   S  E IA AK E+   +       LNYD         K    
Sbjct: 182 RPTIGVITNVGTAHIELLSSEEAIAEAKCELLAEMPNDSVAILNYDSPLLMETAKKFWQG 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + +    G                 +      ++   + +     G H A N L  L +
Sbjct: 242 KVISYGFSGGD------------IQGKLIDNETVEVAGIGLPLPLPGRHNATNFLAALAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D  +                R +         ++DE+YNA P +M AA+ +L+ 
Sbjct: 290 AKVLEIDWQSLQAG----VIVNMPNGRSQRFTLPNDVIILDETYNAAPEAMLAALQLLAD 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDALPR 420
           I    +   IAVLG M E+GE SQ  H  + E++     +   + +       + ++  +
Sbjct: 346 IPGKRK---IAVLGVMKELGERSQQLHQQVGEMVQKLNLDGLLLLVDSKDAEFIANSA-K 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            I      T   L   +++ +  GD ++ K+++S G  R++N L 
Sbjct: 402 GIPCECFATHADLIARLKTFMQAGDRLLFKAAHSVGLDRVVNQLR 446


>gi|325268572|ref|ZP_08135202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
 gi|324989100|gb|EGC21053.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella multiformis DSM 16608]
          Length = 504

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 188/440 (42%), Gaps = 22/440 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSRS      F A+KG  +DG+ F   A+QKG    VV+    A  G        VD
Sbjct: 82  VTTDSRSCPAGSIFIALKGASFDGNRFAEAALQKGCSYAVVDEAEYAKAG--DARFILVD 139

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA A R R    +I ITG+ GKTT+KE+++  LS     +A   +YNN +GV
Sbjct: 140 DALVTYKELARAHRRRFGIPVIGITGTNGKTTSKELISAVLSEKFNVHATEANYNNDVGV 199

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + D  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 200 PRTLLGIRPEHDIAVIEMGASHPGDIEKLVRYVEPTCGLITNVGRAHLQGFGSFEGVKRT 259

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+  G +     +     L   +       I ++G+   AD Q +        
Sbjct: 260 KGELYDFLKAHGGLLF--LNESNADLTEMAEQREFDRIVTYGQDSTADVQGQVVSCAPFL 317

Query: 270 SWMEVQLQGKSMEVVHHGIGY-----HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +    L         + +       +   NML  + +             AL  + P+ 
Sbjct: 318 KFTWRALNTPQPSSNTYEVQTRLVGSYNLDNMLAAISVGLHFGVTAQQVNHALENYIPRN 377

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +    A N     LI ++YNANP+SM AAI     +    +   +A+LGDM E+GE 
Sbjct: 378 NRSQLTETAHN----RLIVDAYNANPSSMSAAIENFRLMQVENK---MAILGDMRELGEA 430

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S   H  +   L    I  VWL G      + A  +         ++ +   I+    +G
Sbjct: 431 SGEEHQRVVGELEAAGIDDVWLVGEEFGKTRCAFRK------FRDVEEVKAEIERRRPEG 484

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K SN    + L  LL
Sbjct: 485 HYILIKGSNGIKLFELPALL 504


>gi|71279923|ref|YP_271117.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
 gi|71145663|gb|AAZ26136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Colwellia psychrerythraea 34H]
          Length = 513

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 131/494 (26%), Positives = 209/494 (42%), Gaps = 36/494 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQE----AFFAIKGP 49
           M  + +   L++   G  I           +  ++ + IDSR+I        AF A+KGP
Sbjct: 1   MITI-SLTTLVKVTDGELIVPAIQTALSLDELVIDDLVIDSRAIKEHSDKCSAFLALKGP 59

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           ++DGH F    +++G  L++V+  + A           V D   AL K+A   +      
Sbjct: 60  NFDGHRFAEQVIKQGCQLLIVDHHLSAV---TDTAQLIVSDTRIALGKIAAFVKKEVAPK 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            + ITGS GKTT KEM+   LS + K  A  G++NN IGVPLTL R+    DF + E+G 
Sbjct: 117 TVGITGSSGKTTVKEMVAAILSRLGKVLATNGNFNNDIGVPLTLLRLDNSHDFAVIEMGA 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H+GEI + T L +P +AVI  IA AHL  F  +  +A AK EIF GL + G    N D 
Sbjct: 177 NHMGEIAYTTALTQPDVAVINNIAAAHLEGFGDLCGVARAKGEIFSGLGENGVALYNKDT 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
            +    +     L  KT+ +F     A+    K            +Q +  S  +     
Sbjct: 237 KYTSKWQ---WRLTDKTVRTFSCVNKANCYSEKVSLDKNGCASFTLQSEQGSCVMTLTVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESY 346
           G H   N +    I     A ++     L+   P        +           LID+SY
Sbjct: 294 GKHNVCNAVAAAAIALEFGASLEDIQLGLAQMQPVKGRLNLHQLENKKTGCNVKLIDDSY 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S        +Q+     G+++ +LGDM E+G  ++S+H ++        ++ +  
Sbjct: 354 NANLESA----KAAAQLLSSYPGKQLLILGDMGELGSEARSYHQEVGGFAKHLQLNTLLS 409

Query: 407 SGFHVLALKDALPRSIHV----HYSETMDGLFLFIQSSL-------VDGDVVVVKSSNSC 455
            G    +  DA  +  H      +      L   + + L            ++VK S S 
Sbjct: 410 LGVLSQSASDAFAKDNHKNDQSQHFNQRADLMTHLFTMLSQQLSVGQQDIAILVKGSRSA 469

Query: 456 GFYRLINLLLEEFP 469
               ++  +++ F 
Sbjct: 470 HMEHVVTEIIDWFE 483


>gi|210634248|ref|ZP_03298046.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
 gi|210158884|gb|EEA89855.1| hypothetical protein COLSTE_01968 [Collinsella stercoris DSM 13279]
          Length = 482

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 188/467 (40%), Gaps = 20/467 (4%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
                    P     G++IDSR + P   F A  G   DG+DF L A++ GAG VV+  D
Sbjct: 13  TGARLAAGDPDRMCRGVTIDSRVVEPDAIFVAFPGERVDGNDFALKAIELGAGAVVMTRD 72

Query: 74  MVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
               +          V   DD    L +LA   R R + T+I +TGS+GKTTTK++L   
Sbjct: 73  PEDEVVAMARDRGCAVLTCDDPTEFLLRLAQGYRARLRCTVIGVTGSIGKTTTKDVLAAC 132

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           LS   + +A  G+YNN IG+PLT+   P D    + E+GM+  GEI  LT   +P   +I
Sbjct: 133 LSKRYRVHATAGNYNNLIGLPLTILSAPADTQMLVLEMGMNDFGEISRLTACAQPTFGII 192

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLE--------KTGTIFLNYDDSFFELLKAKSHA 241
           T +  +H+      E IA AKAEI EG+             + L+ +D F   +  +   
Sbjct: 193 TKVGTSHIGMLGSREGIARAKAEIVEGMPPSAENFEGHHSALVLHGEDDFTPYIIERYAR 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +   G S + D      +   +                 H        ++   L 
Sbjct: 253 PAGIDVVLAGTSTDDDVCATHIELDEDGRAHFDITFEDGSSFKTHLSIPGAQ-SVPNALF 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             ++       A +    F   E  G+R +         +ID+SYNA+P SM A + +L 
Sbjct: 312 AAAVAHRLGVPAFEIDEAFASLEMTGRRAQVRHAACGARVIDDSYNASPESMAAGLDLLG 371

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP- 419
            +     G RIAVLG+M EMG+ +   H       +      +    G     +  A   
Sbjct: 372 SLP--CSGTRIAVLGEMGEMGDEAPRLHALTGAYAAAKRPGLLICVGGELADEMAAAARL 429

Query: 420 ---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                  V    + D L       L   D+V+VK S   G  R +  
Sbjct: 430 MGMDEGDVQVVPSCDVLIKRFAGVLGVRDLVLVKGSRFVGLDRFVEE 476


>gi|255320230|ref|ZP_05361415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
 gi|255302669|gb|EET81901.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SK82]
          Length = 468

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 207/472 (43%), Gaps = 27/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D HDF+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHDFVAQVLDK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +      L +    V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG+    D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTRVLSFGE--GGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L +    +GR       ++      ID++YNANP SM+AA  VL+ 
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNF----ISHKQHLFIDDTYNANPTSMRAAGEVLA- 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
                 G ++ V GD+ E+G+ +   H  L   L   +I+ V   G    A  +      
Sbjct: 359 ---QQSGIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFVVTIGEFAPAALEGARSTR 415

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
               +    T      F+ S +          + K S       L+  L+E+
Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467


>gi|153803322|ref|ZP_01957908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|153830357|ref|ZP_01983024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
 gi|124121140|gb|EAY39883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae MZO-3]
 gi|148874164|gb|EDL72299.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           cholerae 623-39]
          Length = 453

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V+ +S DSR I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--EDRAVSAVSTDSRVIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAIALLVQRELDAECS-----QLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHVGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  +  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +       +      + V    +G H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVAVELGIMGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +    + L+     +GR    +   +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDI---TLIDDSYNASVPAMKAAVEL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452


>gi|94970660|ref|YP_592708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552710|gb|ABF42634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 458

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 218/470 (46%), Gaps = 20/470 (4%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   LW   + +     +  G        G SIDSR+I P E FFA+KG   DGHD++  
Sbjct: 1   MKLALWRIAEFIHGTGDYRAG----AEALGYSIDSRTIKPGELFFAVKGERLDGHDYVQA 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA   VV+ +  A        +   DD L AL++LA   R      ++ +TGS GK
Sbjct: 57  ALDRGAVAAVVSREFPARFNGTR-NLLVADDPLLALHRLAEMVRSLWHHPVVGVTGSAGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE +   L+S  K     G+ NNH G+PL L ++  + +  + E+GMSH GEI  L 
Sbjct: 116 TTTKECIAHVLASKLKVLKSEGNLNNHFGLPLQLLKVEPEHEIAVIEMGMSHAGEIAALA 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L +P+  V+T +AP HL NF  I  IA AK E+   L + G   LN DD F        
Sbjct: 176 KLAQPNTGVVTNVAPVHLENFDSIAGIARAKYELIAALPRGGCAVLNADDEFVSQFGRDF 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           H   +     FG  + ADF+    +   +  S  +++ + K        IG H   N L 
Sbjct: 236 HGTVLM----FGVKRAADFRAENVEMLGAAGSKFDLRFREKGYPAEMPLIGEHNVYNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       +++AI +L    P + RG+    A      T++++ YN+NP ++ A + 
Sbjct: 292 AVAVGVHHGIAIESAIASLKTLKPADKRGEVVEIAG----ATVVNDCYNSNPKALNAMVD 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+++       RI + G+M E+G   +  H D  + +    + H+        A+ +  
Sbjct: 348 ALAKMPAQR---RIVIAGEMLELGPEGEHLHRDSGKHMKGI-VDHLVGVRGLAQAMVEGA 403

Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +   +  T +    ++ +++  GD V++K+S      R +    E+
Sbjct: 404 KSAGVEAEFVATPEEAGDWLAANIRPGDAVLLKASRGVKLERALERWKEK 453


>gi|149201998|ref|ZP_01878972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
 gi|149145046|gb|EDM33075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Roseovarius sp. TM1035]
          Length = 478

 Score =  227 bits (578), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 173/475 (36%), Positives = 246/475 (51%), Gaps = 18/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LW+  + + A QG            G+SID+R++ P + F A+     DGH+F+  A
Sbjct: 1   MS-LWSAKEAVAATQGR---STADWQATGVSIDTRTLKPGDLFVALNAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+   +        P+  V+DV   L  L  AAR RS+A ++A+TGSVGKT
Sbjct: 56  LAKGAAAALVSR--IPEGLPAEAPLLIVEDVQKGLEDLGRAARARSEARVVAVTGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L    +T+A   SYNNH GVPLTLARMPVD +F + E+GM+H GEI  L  
Sbjct: 114 STKEMLRDVLGHQGRTHAAEASYNNHWGVPLTLARMPVDTEFAVIEIGMNHPGEIAPLAC 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+AVITT+A AHL  F  I+ IA  KA IFEGLE  G   +N D +   +L+AK+ 
Sbjct: 174 MARPHVAVITTVAAAHLEAFENIDGIAKEKASIFEGLEPGGVAVINADIATTPILRAKA- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I SFG ++ A  +L   +     +    +     +       G H A N L  L
Sbjct: 233 AQHAARILSFGTARGAHHRLLNVELHDHVTVGHARAWRSPLVYKVGVPGRHFAMNALAVL 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCA----LNQGFFTLIDESYNANPASMKAA 356
            +  +L  D   A+  L+ + P  GRG R         +     LID+++NANP SM AA
Sbjct: 293 AVAQVLGCDRAVAMADLASWAPPAGRGTREELVLDLASDGMSIDLIDDAFNANPTSMAAA 352

Query: 357 ISVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P         GRRIA+LGDM E+G    + H  LA++  +  I+ +   G  
Sbjct: 353 LEVLAAAHPRDGVGRVSRGRRIAILGDMLELGPDEAAMHAGLADLPYMARINEIHCVGPR 412

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           + AL D LP +    +  + + L       +  GDVV+VK S       ++  L 
Sbjct: 413 MRALWDILPEARRGRWVASAEELAAQAHRLIDAGDVVLVKGSKGSRVSLVVEALR 467


>gi|222524108|ref|YP_002568579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
 gi|222447987|gb|ACM52253.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           sp. Y-400-fl]
          Length = 497

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 136/500 (27%), Positives = 213/500 (42%), Gaps = 50/500 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    +LL  +Q   I              +  +  DSR + P   F A+ G   DGH F
Sbjct: 1   MIRLDNLLYGVQPRVIRQAVTLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRF 60

Query: 57  ILHAVQKGAGLVVVNTDM-------------------------VASIGSLSIPVFGVDDV 91
           +   V +GA   +V+ +                          +A++   +  +  VDD 
Sbjct: 61  LADVVTRGAAAALVSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDP 120

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L AL ++AV  R     T+I ITGSVGKT+TKE++    S   +T     S+N+ + +P 
Sbjct: 121 LFALQRVAVYHRQMFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPA 180

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  +  D    + E+GM   GEIRFL  L RP I ++T + P+HL     IE IA+AKA
Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKA 240

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQS 270
           E+ E L   G   LN DD     + +++ A     + ++G + NAD +L           
Sbjct: 241 ELPESLPADGWCILNADDHRVAAMASRTAA----RVLTYGYAPNADVRLLDVVSHGLYGI 296

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V  +G+S  +    IG H A   L  +    +L  D D   + L       G   R 
Sbjct: 297 ELTVGYEGQSHRLTTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE----PGEQLRL 352

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R    Q   T+ID++YNA P S  AA+ VL+      +GRRIAVLG+M E+G  S   H 
Sbjct: 353 RIVPGQHGTTIIDDTYNAAPLSTIAALQVLA----ETKGRRIAVLGEMLELGAASVEGHQ 408

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDV 446
            +    +      +   G     + +A   +      +   +  +     +   +  GD 
Sbjct: 409 QVGAAAATM-ADVLVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDH 467

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           +++K S       ++  L  
Sbjct: 468 LLIKGSRGVQMETIVAALQA 487


>gi|325962945|ref|YP_004240851.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469032|gb|ADX72717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 488

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 134/477 (28%), Positives = 205/477 (42%), Gaps = 19/477 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   +T  ++     G          ++ +  DSR       + A  G + DGHDF+  A
Sbjct: 1   MIA-FTAAEIADITNGRLDAEPGITPLS-VVTDSREATQGSLYVAKPGENADGHDFVGSA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARL--------RSKATII 111
              GA L +V   +++  G    P   V D + A+ KLA    R           + T+I
Sbjct: 59  FAAGATLALVEHPVLSPDG-TPYPSVLVPDAVLAMGKLAAESVRRIRAARAETNDELTVI 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK++L   LS+   T A  GSYN  IGVPLT+     D  + + E+G + 
Sbjct: 118 GITGSAGKTTTKDLLAGILSAHGTTVAPKGSYNGEIGVPLTVFTAGTDTRYLVIEMGATG 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +G I +L  +V+P I V+  +  AH   F G+E IA AK E+ EGL  +GT  +N DD  
Sbjct: 178 IGHISYLVDMVKPDIGVVLAVGTAHAGEFGGVENIAQAKGELVEGLAASGTAIINLDDER 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              ++A++ A  +    + G+   A   L            ++ L G             
Sbjct: 238 VAAMQARTSASVLG-FTAEGRPGAAVQALNADTNAEGNPEFDLLLPGGDTPHHVSSRLIG 296

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                 +     +   A V     A ++         R          T+I+++YNANP 
Sbjct: 297 AHHTGNLLAAAAAAWAAGVSGEDIAAALSSQAAASRWRMERTERADGVTIINDAYNANPE 356

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AA+  L+ +      R  AVLG M E+GE S   H  +   +   NIS + + G   
Sbjct: 357 SMRAALRTLADLGQ--GRRTWAVLGAMLELGEDSIREHTAVGTQVVRLNISRLVVVGREA 414

Query: 412 LALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL               ++E  +  +  + + L  GD+V+ KSSNS G   L + +
Sbjct: 415 RALYVSAVQEGSWGDECIFAEDAEEAYELLSAELEPGDLVLFKSSNSVGLRHLGDRI 471


>gi|255264176|ref|ZP_05343518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
 gi|255106511|gb|EET49185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Thalassiobium sp. R2A62]
          Length = 472

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 164/476 (34%), Positives = 235/476 (49%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  D   A  G + G   +   +G+SID+R+IA  + F A+     DGHDF+  A
Sbjct: 1   MT-LWTATDAAAATGGRTSG---EWAASGVSIDTRTIAKGDLFVALADIR-DGHDFVGMA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V         +   P+  V +VL AL  L  AAR R+ A +I ITGSVGKT
Sbjct: 56  LDKGAAAALVTH--RPEGVADDAPLLIVPNVLKALEDLGSAARARTGAKVIGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L +  K +A   SYNNH GVPLTLARMP D +F I E+GM+H GEI  L  
Sbjct: 114 STKEMLRTVLQAQGKIHAAEASYNNHWGVPLTLARMPQDTEFAIIEIGMNHAGEIAPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +   A+ITT+APAHL  F  + EIA  KA I EGL        + +         +  
Sbjct: 174 MAQLDAAMITTVAPAHLEAFGSVAEIAVEKAAITEGLNGPLIANRDIETWDV----IRDV 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A   +T  ++  ++   F L   +     + +  +  G  + +     G H A N L  +
Sbjct: 230 AAAAETQVTWFGAQADAFVLTDVRLADSATVIVAEFNGTPLLIKLSVAGRHFAMNALGAV 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356
            +   + AD+  A   ++ + P  GRG R    L+           D+++NANP SM+A+
Sbjct: 290 AVCDAVGADIARAAMDMANWLPPAGRGTRETLRLDTQNSDDTVDLYDDAFNANPTSMRAS 349

Query: 357 ISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           + VL+   P        +GRRIAVLGDM E+G      H D+A   SL  ++ V   G  
Sbjct: 350 LEVLAATQPRDNVGRIVKGRRIAVLGDMLELGSAEMQMHADMAADPSLPAVTVVHCVGPR 409

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +L D LP      + E    L     S +  GDV++VK S       +++ L +
Sbjct: 410 MRSLYDVLPEGQRGQWVEIAGELAGKAHSLIDAGDVILVKGSKGSKVSLIVDALRK 465


>gi|270295564|ref|ZP_06201765.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274811|gb|EFA20672.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 432

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPEGDT--RYIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L       +   +    L   K  A G+  I    +               
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                +   + K  EV    IG +   N L  + I      + +   KAL+ + P+  R 
Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM A+IS    +    +   + +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A+ L       V L G    A + +            +  L   +Q     G  +
Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      ++  L
Sbjct: 416 LIKGSNGIKLSSVVEYL 432


>gi|319947393|ref|ZP_08021625.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
 gi|319746333|gb|EFV98594.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus australis ATCC 700641]
          Length = 456

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 129/471 (27%), Positives = 204/471 (43%), Gaps = 30/471 (6%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T H++ + +     I       +     DSR I   + F  +K    DGHDFI  A + G
Sbjct: 4   TLHEVARVLAVRNDISQFEDFDLQKPEFDSRLIGKGDLFVPLKVAR-DGHDFIETAFENG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   ++         P   VDDVLGA  KLA     +S+  ++A+TGS GKTTTK+
Sbjct: 63  AVATLSEKEVE------GHPYLLVDDVLGAFQKLAQYVLEKSQVDVLAVTGSNGKTTTKD 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ +  P
Sbjct: 117 MLAQLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSEIAHP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T I  AHL  F    EIA  K +I +G+   G + +  D    + L         
Sbjct: 177 KAAIVTLIGEAHLEFFKDRTEIAKGKLQIADGMPAGGLLLVPADPIVEDFL------PNQ 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG+  +    +R  K    +  +  +       +     G + A N ++   +  
Sbjct: 231 QELVRFGEGAD----IRITKLDERKDSLTFEANFLEEAIDLPVTGKYNATNAMIASYVAL 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +      + F   E    R           ++ + YNANP +M+  +   S I 
Sbjct: 287 KEGVSEEAI---RASFKGLELTKNRTEWKKAGNGADILSDVYNANPTAMRLILETFSTIP 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
            +  GR++AVL DM E+GE S   H  +   LS   +  V   G  +  L     +    
Sbjct: 344 ANPNGRKLAVLADMKELGEQSIDLHNQMILSLSPDVLDTVIFYGQDIAGLAQLASQMFPL 403

Query: 422 IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            HV+Y       +  + L   ++ SL + D +++K SNS    +L+  L  
Sbjct: 404 GHVYYFKKTAEEDQFEDLVKQVKESLKEQDQILIKGSNSMNLAKLVEELEN 454


>gi|149370882|ref|ZP_01890477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
 gi|149355668|gb|EDM44226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [unidentified eubacterium SCB49]
          Length = 427

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 121/438 (27%), Positives = 202/438 (46%), Gaps = 25/438 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  D+R I     FFA+ G +++G+ F   A++ GA  VV++      +   +     
Sbjct: 14  TGICTDTRKITEGCLFFALSGENFNGNTFAKQALELGAHKVVIDQKEYHQVSGET---IL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            D+ L  L KLA   R      I+A+TGS GKTTTKE++   LS    T A  G+ NNHI
Sbjct: 71  TDNSLECLQKLASFHRQYLNIPILALTGSNGKTTTKELIHAVLSKKFNTTATKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  + + GI E+G +HL EI  L H+ +P+   IT    AHL  F  +E + 
Sbjct: 131 GVPLTLLSMTKETEIGIVEMGANHLKEIETLCHIAQPNYGYITNFGKAHLEGFGSLEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ + K+  +     +        +      +  Y+FG       +    +   
Sbjct: 191 KGKTELYKHIVKSDGLLFVNAND-----AKQLELTKKEKRYTFG------NEGNDCEIKL 239

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++  E+ +  +   +  + IG +   N+   + I            +A+  + P   R 
Sbjct: 240 LEATKELIISYQGQSINSNLIGLYNYHNIAAAIAIGQYFKVSATKVKEAIEEYIPTNNRS 299

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +        T+I ++YNANP+SM AA+    Q   + +   I +LGDM E+GE +  
Sbjct: 300 QIIKQNG----HTIILDAYNANPSSMTAALDNFKQTVGNNK---ILILGDMFELGETASK 352

Query: 388 FHIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            H  +A+ +S  NI + V+L G +   +K     + H+H   T + L   ++    +   
Sbjct: 353 EHQAIADKISSQNIGNTVYLVGENFSKIKT---DNKHMHLCPTFEALQSNLKHQKPNNAT 409

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      R + LL
Sbjct: 410 ILIKGSRGMALERTLKLL 427


>gi|311063962|ref|YP_003970687.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF
           [Bifidobacterium bifidum PRL2010]
 gi|310866281|gb|ADP35650.1| MurF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 513

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 216/507 (42%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 1   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSKAT 109
           GHDF+  A + GA + +V  ++ A      +    V D + AL  LA    AAR      
Sbjct: 60  GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAVGTP 114

Query: 110 --IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+
Sbjct: 115 FTLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN 
Sbjct: 175 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 234

Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274
           DD+    +   +    +                   GKS        +       S+   
Sbjct: 235 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354

Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSGEDPYRIAVLGAMLELGGDESALHEGIG 414

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501


>gi|163846343|ref|YP_001634387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
 gi|163667632|gb|ABY33998.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chloroflexus aurantiacus J-10-fl]
          Length = 483

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 134/487 (27%), Positives = 210/487 (43%), Gaps = 45/487 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + QA+            +  +  DSR + P   F A+ G   DGH F+   V +GA   +
Sbjct: 2   IRQAV--TLPPSWANAQIGPVVTDSREVTPGSLFVALTGERTDGHRFLADVVTRGAAAAL 59

Query: 70  VNTDM-------------------------VASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           V+ +                          +A++   +  +  VDD L AL ++AV  R 
Sbjct: 60  VSPEKLTALASNLDTVARPWRLIEPAQAQTLATVPPDACLLIAVDDPLFALQRVAVYHRQ 119

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
               T+I ITGSVGKT+TKE++    S   +T     S+N+ + +P TL  +  D    +
Sbjct: 120 MFTPTVIGITGSVGKTSTKEVVAAVCSRRLRTLKSQRSFNSEVTLPATLLGLTADHQVAV 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+GM   GEIRFL  L RP I ++T + P+HL     IE IA+AKAE+ E L   G   
Sbjct: 180 LEMGMWAAGEIRFLATLARPQIGIVTNVGPSHLERLGSIEAIANAKAELPESLPADGWCI 239

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEV 283
           LN DD     + +++ A     + ++G + NAD +L            + V  +G+S  +
Sbjct: 240 LNADDHRVAAMASRTAA----RVLTYGYAPNADVRLLDVVSHGLYGIELTVGYEGQSHRL 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H A   L  +    +L  D D   + L       G   R R    Q   T+ID
Sbjct: 296 TTPLIGRHHAYTALAAIAAGLVLGLDWDAIAEGLRE----PGEQLRLRIVPGQHGTTIID 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNA P S  AA+ VL+      +GRRIAVLG+M E+G  S   H  +    +      
Sbjct: 352 DTYNAAPLSTIAALQVLA----ETKGRRIAVLGEMLELGAASVEGHQQVGAAAATM-ADV 406

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +   G     + +A   +      +   +  +     +   +  GD +++K S       
Sbjct: 407 LVAVGRQAHTMAEAARSAGMPAEQILVCDNNEAAINLLNRYIQPGDHLLIKGSRGVQMET 466

Query: 460 LINLLLE 466
           ++  L  
Sbjct: 467 IVAALQA 473


>gi|302550800|ref|ZP_07303142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468418|gb|EFL31511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl [Streptomyces
           viridochromogenes DSM 40736]
          Length = 471

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 129/476 (27%), Positives = 195/476 (40%), Gaps = 25/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ + + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAEVVGGQTHDIPDPSVQVTGPVVRDSREAGPGSLFVAFAGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V     + +P   VDDV  AL  LA     R  AT++A+TGS G
Sbjct: 60  -------AVVGAGAVAVLGTRPVGVPAIVVDDVQTALGALARHVVRRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T    GS NN IG+PLT      +  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQRKAPTVFTPGSLNNEIGLPLTALSATEETRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELL 235
             L  P I ++  +  AH+  F G E+IA AK E+        + GT  LN DD +   +
Sbjct: 173 AGLTPPKIGLVLNVGSAHIGEFGGREQIAQAKGELVEALPSEAEGGTAILNADDPYVRAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +++ A  I     FG+S  AD      +          +L   S         Y     
Sbjct: 233 ASRTKAKVIL----FGESGEADVSAENVRLTDTGQ-PAFRLHTPSGASDVTMRLYGEHHV 287

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                         +     A+++         R          T+++++YNANP SM+A
Sbjct: 288 SNALAAAAVAHELGMSADEIAVALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL 414
           A+  L+  +     R  AVLG M E+G+ + + H  +  +    N+S +    G     L
Sbjct: 348 ALRALA--AMGKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREAAWL 405

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +         +          ++S L  GDVV+VK+S S G   +   LLE
Sbjct: 406 QLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLEGVAQALLE 461


>gi|160887823|ref|ZP_02068826.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
 gi|156862653|gb|EDO56084.1| hypothetical protein BACUNI_00226 [Bacteroides uniformis ATCC 8492]
          Length = 432

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDT--RYIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L       +   +    L   K  A G+  I    +               
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                +   + K  EV    IG +   N L  + I      + +   KAL+ + P+  R 
Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM A+IS    +    +   + +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A+ L       V L G    A + +            +  L   +Q     G  +
Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRHSYQS------YPDVTALIAELQREKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      ++  L
Sbjct: 416 LIKGSNGIKLSSVVEYL 432


>gi|326570018|gb|EGE20064.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC7]
          Length = 494

 Score =  227 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    IP   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVKCDIPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV   G H+     A+     +  +      L   ++  L  G   V+ K S  
Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|15615133|ref|NP_243436.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
 gi|10175190|dbj|BAB06289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus
           halodurans C-125]
          Length = 452

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 125/463 (26%), Positives = 208/463 (44%), Gaps = 25/463 (5%)

Query: 12  QAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           Q ++G      P       G+S D+R+I     F  + G  +DGHD++  A+ KGA   +
Sbjct: 6   QLLKGIITKNNPSAPLSFTGVSTDTRTIQEGNLFVPLIGERFDGHDYVEQALSKGAQASL 65

Query: 70  V--NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
              +  +  S+ +    +  V+D L AL  +A A   +++ T++A+TGS GKTT K++L 
Sbjct: 66  WATSVPVPESLKNED-RLLFVNDTLFALQAMAKAYLRQTEPTVVAVTGSNGKTTVKDLLY 124

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+ +   Y   G+YNNHIG+PLT+  MP +    I E+GMS LGEI  L+ L  P IA
Sbjct: 125 ATLAPLGSIYKTQGNYNNHIGLPLTVLSMPANCQTLILEMGMSGLGEIELLSKLATPDIA 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T I  +HL      E IA AK EI  GL+ TG +FL+ D+        +        +
Sbjct: 185 VVTNIGESHLEQLGSRENIAKAKMEIALGLKPTGVLFLDGDEPLLSHYVKEG-------V 237

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G S      +   +   +     +      ++++      + A  + + L +     
Sbjct: 238 QTVGFSSENKIVIHDLEAREDGYSFTIDEHSYDIKLIGEHNVKNAAYAVSVALHLGLSPE 297

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                                R      Q    L++++YNA+P SMKAAI  L     + 
Sbjct: 298 QV-------ARSLERVAISKMRLEKIEGQKGALLLNDAYNASPTSMKAAIKTLKAYPNYE 350

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHV 424
           +   +AVLGD+ E+G   ++ H  +A+ ++   I+   L G     + D + R   +I  
Sbjct: 351 KK--VAVLGDIYELGIDEEALHRSVADEITE-PITTAVLVGEKGQWIADEMKRRGSNIPF 407

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +    +I+  L    VV+ K+S       +++ L  E
Sbjct: 408 VSFVEKEEATDYIEGLLDGKTVVLFKASRGLELESIVDKLKRE 450


>gi|319789828|ref|YP_004151461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114330|gb|ADU96820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermovibrio
           ammonificans HB-1]
          Length = 432

 Score =  227 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 192/465 (41%), Gaps = 33/465 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++G  +G    G   G+  DSR IA  E F  +KG   DGH FI  A  +G
Sbjct: 1   MDAKTLAEIVKGELVG---SGRFGGVHFDSREIAKGELFIPVKG-RRDGHLFINDAFSRG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +    +    G        V D L A  +LA   R + K T+I +TGSVGKTTTKE
Sbjct: 57  AAGTLTERRVELPPGKF---QVVVRDTLEAFERLARWKREKFKGTVIGVTGSVGKTTTKE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L     T     S+NN +GV  TL+ +P    F + ELG +  GEI  LT  V+P
Sbjct: 114 LLGKLLGRNCYTS--KKSFNNLLGVCYTLSNLPESARFLVQELGTNSPGEIARLTKTVKP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+AV+TT+  AH   F  +E I   K  I EG E                LK    A   
Sbjct: 172 HVAVVTTVGKAHTQGFKTLEAIKKEKLSITEGAEVAVVPV---------ELKEMCRADKC 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+   G       +++ W     ++   ++   + +++     GY +     +   +  
Sbjct: 223 LTVGRGGTV-----EVKNWGIKGGRTLFTLKAGKEELQLESSIPGYSIVNAAAVAAAVAL 277

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   +K +  F P + R             TLID+ YNANP SM+ A+ VL+   
Sbjct: 278 ELGIPLRELVKVVREFSPPKHRCS----VERLPNGTLIDDCYNANPVSMENAVRVLASF- 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G ++AVLG+M E+GE     H  L E+L+   I  +   G                
Sbjct: 333 ---NGPKVAVLGEMLELGEEGPKEHRKLGELLNALGIEELIAFGAQTEETVKTFK--GKG 387

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +    +    FI      G  V+VK S        + L+ E   
Sbjct: 388 FHFTNREEFIKFISEFPFRGKTVLVKGSRGNRLEEAVELIRERLK 432


>gi|310287097|ref|YP_003938355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
 gi|309251033|gb|ADO52781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Bifidobacterium bifidum S17]
          Length = 519

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 149/507 (29%), Positives = 216/507 (42%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 7   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLRSKAT 109
           GHDF+  A + GA + +V  ++ A      +    V D + AL  LA    AAR      
Sbjct: 66  GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRTVGTP 120

Query: 110 --IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+
Sbjct: 121 FTLIGITGSVGKTTTKDLMAALLSTLGPTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN 
Sbjct: 181 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 240

Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274
           DD+    +   +    +                   GKS        +       S+   
Sbjct: 241 DDAHVATMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360

Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507


>gi|283456400|ref|YP_003360964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
 gi|283103034|gb|ADB10140.1| murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium dentium Bd1]
          Length = 499

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 209/491 (42%), Gaps = 33/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +                 DSR +     F AI G   DGHDF
Sbjct: 7   MMPMG-LAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++        +P   VDD + AL +LA     R     S  T+I
Sbjct: 66  VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241

Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +   +    +           +    +  +  +    S+     +G+  +V     G
Sbjct: 242 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348
            H   N L    +V  L   +D     L+                  +  FTLID+S+NA
Sbjct: 302 MHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 361

Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +  L +   + E +    AVLG M E+G   ++ H  +        ++ +  
Sbjct: 362 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIA 421

Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452
            G       DAL  +              V ++  +D     +        G VV++K S
Sbjct: 422 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 481

Query: 453 NSCGFYRLINL 463
           ++ G   L   
Sbjct: 482 HASGLSALAER 492


>gi|260775370|ref|ZP_05884267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608551|gb|EEX34716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 452

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 200/471 (42%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L+  +    IG      +  +S D+R+I     F A+ G  +D HDF   A
Sbjct: 1   MITLM-LSQLVDVLDAQLIGD--DTAIESVSTDTRTIESGSLFVALVGERFDAHDFAGQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++V+  +      + +P   V+D   AL KL        +   +AITGS GKT
Sbjct: 58  ASAGASALLVSKAV-----DVQVPQLLVEDTKVALGKLGQFVHQVCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   ++   +     G++NN IGVPLTL R   + DF + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASIMTQKGQVLYTAGNFNNDIGVPLTLLRSQPEDDFAVIELGANHVGEIAYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P +A++  +A AHL  F  ++ +  AK EI++GL+      +N D +  E  +    
Sbjct: 173 LVNPDVAMVNNVAAAHLEGFGSMDGVKRAKGEIYQGLKPGSVAIVNLDSNGGEHWREVLS 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +KT      S     +        E S+  +Q    S +V    IG H   N L   
Sbjct: 233 DKTVKTFSLSDNSAEYKARNVTMNVNGEASF-TIQTPETSFDVKLGIIGQHNVSNALAAT 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L A  +     L+            +  +     T      + +  +   A+   
Sbjct: 292 ALSLELGATTEMIASGLANLSKV-------KGRVETVDLTDSIRLIDDSYNASVPAMKAA 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +    +G R  VLG+M E+GE S + H  + E  + +   HV   G    A+ D    
Sbjct: 345 ADLLNSFDGVRWLVLGNMAELGEESLALHRQVGEHAAPFKFEHVLTFGADTKAISDV--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLEEF 468
                + +T D +  FI+  L        ++VK +NS G  ++   L E +
Sbjct: 402 -CQGMHFDTHDHMIEFIEQQLSQQTGPHTLLVKGANSAGMSKIAAALKEMY 451


>gi|325286970|ref|YP_004262760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
 gi|324322424|gb|ADY29889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulophaga lytica
           DSM 7489]
          Length = 425

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 117/436 (26%), Positives = 189/436 (43%), Gaps = 27/436 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I     FFA+KG +++G+ +   A++KGA   VV+    A           VD
Sbjct: 16  VCTDTRKITKDCIFFALKGDNFNGNTYASEALEKGAAYAVVDEKEYAINN----KFILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +L    R + KA +I +TGS GKTTTKE++   +    KT A +G+ NNHIGV
Sbjct: 72  DVLQALQQLGKYHRKQCKAKVIGLTGSNGKTTTKELIKAVIQKKYKTVATVGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D +  I E+G +HL EI FL+ L  P    IT    AHL  F   E +   
Sbjct: 132 PLTLLTIQKDTEIAIVEMGANHLKEIAFLSSLAEPDYGYITNFGKAHLEGFGSTEGVIQG 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++ L                 L A       K      K   +      +K     
Sbjct: 192 KSELYKYLTTNQKHV---------FLNADDPIQESKLGTYVKKIGFSSNNSNYFKIELLS 242

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   V ++ K + +    +G +   N    + +       +    +A+  + P   R + 
Sbjct: 243 ADPFVTIKVKDITITTKLVGAYNFTNCCAAIIMGKYFNIALPLIKEAIEGYTPANNRSQI 302

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                    + +I ++YNANP SM AA+   + I       +I  LGDM E+G  +++ H
Sbjct: 303 LEQNG----YKIILDAYNANPTSMAAALDNFNGIKAA---HKIVFLGDMFELGTTAETEH 355

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVV 448
             +A+     N +  +L G +    K             T   L  +++   L     ++
Sbjct: 356 QHIADKACKMNFTTTFLVGENFAKAK------TEATQLATFKDLEEYLKKHPLQPNSSLL 409

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      R++++L
Sbjct: 410 IKGSRGMALERILDIL 425


>gi|319952318|ref|YP_004163585.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Cellulophaga
           algicola DSM 14237]
 gi|319420978|gb|ADV48087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulophaga
           algicola DSM 14237]
          Length = 436

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 116/440 (26%), Positives = 196/440 (44%), Gaps = 26/440 (5%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + IS D+R +     FFA+KG ++DG+ +   A++ GA   V++ +  A   +    
Sbjct: 23  LKFSTISTDTRKVTKDCIFFALKGENFDGNTYAKKALESGAKYAVIDDERFADSDAT--- 79

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V DVL  L +LA   R   K  +IA+TGS GKTTTKE++   L +  KT A +G+ N
Sbjct: 80  -ILVPDVLTCLQQLANFHRNFYKTKVIALTGSNGKTTTKELINSVLCTTYKTIATVGNLN 138

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIGVPLTL  +  D +  I E+G +H  EI FL ++  P    IT    AHL  F   E
Sbjct: 139 NHIGVPLTLLAIKEDTEIAIIEMGANHQKEIEFLCNIAEPDFGYITNFGKAHLEGFGSFE 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +   K+E+++ L+K         D   +       A  +    +       D      +
Sbjct: 199 GVIKGKSELYDYLQKDEKPIFFNADDELQ-------ANKLSNYINKFGFSETDSHYYNIQ 251

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                 ++++  + + +     G    +       + +       +D     +  + P  
Sbjct: 252 LKEADPFVQIIFENQEIVSNLIGAYNFINCCA--AIIMGKYFNVSIDQIKNGIERYIPSN 309

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R       L Q    +I ++YNANP+SMKAA+   S++    +   I  LGDM E+G  
Sbjct: 310 NRS----QVLTQNTNEIILDAYNANPSSMKAALDNFSKLKTTKK---IVFLGDMFELGST 362

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +   H  +AE+ S  N +  +L G +       L         ++ + L +F++++    
Sbjct: 363 APEEHQHIAELTSALNFTEAFLIGENFDVTTSDLKT------FKSFNELAVFLKTNTFKD 416

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K S      R+++LL
Sbjct: 417 ASILIKGSRGMALERVLDLL 436


>gi|171742513|ref|ZP_02918320.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
 gi|171278127|gb|EDT45788.1| hypothetical protein BIFDEN_01625 [Bifidobacterium dentium ATCC
           27678]
          Length = 493

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 136/491 (27%), Positives = 209/491 (42%), Gaps = 33/491 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +                 DSR +     F AI G   DGHDF
Sbjct: 1   MMPMG-LAEIEQAVHGRLVTAEGISSNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++        +P   VDD + AL +LA     R     S  T+I
Sbjct: 60  VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 115

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 116 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 175

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 176 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 235

Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +   +    +           +    +  +  +    S+     +G+  +V     G
Sbjct: 236 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348
            H   N L    +V  L   +D     L+                  +  FTLID+S+NA
Sbjct: 296 MHNVMNALAAATVVHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 355

Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NP SMKA +  L +   + E +    AVLG M E+G   ++ H  +        ++ +  
Sbjct: 356 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAMLELGPDERALHEQVGSYAVQGGVNALIA 415

Query: 407 SGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQSSL--VDGDVVVVKSS 452
            G       DAL  +              V ++  +D     +        G VV++K S
Sbjct: 416 VGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSRLATEHAGTVVLLKGS 475

Query: 453 NSCGFYRLINL 463
           ++ G   L   
Sbjct: 476 HASGLSALAER 486


>gi|154509046|ref|ZP_02044688.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798680|gb|EDN81100.1| hypothetical protein ACTODO_01563 [Actinomyces odontolyticus ATCC
           17982]
          Length = 465

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 211/467 (45%), Gaps = 14/467 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G      V G +  DSR       + A +G   DGH F+  A  +G
Sbjct: 4   SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120
           A  V+V  ++  +     +P   V+D   AL  LA A   +        +IA+TGSVGKT
Sbjct: 62  AVAVIVEHEVDEA-----VPQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   +S    T A   S+NN +G+PLT+          + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+ +G    G + LN DD   E +   + 
Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I+   S  +  +   +  +  +    S+  V  +G++   +     +H+A  +    
Sbjct: 237 GRVIRFSASGNERADVVARDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAAAA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G +++       A            R   +   ++    TLID+SYNAN  SM+A I+ L
Sbjct: 297 GALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAAL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I    + +RIAVLG+M E+GE SQS H  +  +++   +  +   G       +  P 
Sbjct: 357 ASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPE 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +   +               DG VV+VK S     +++ ++L E+
Sbjct: 415 VPNREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461


>gi|262166448|ref|ZP_06034185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
 gi|262026164|gb|EEY44832.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus VM223]
          Length = 453

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 215/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    +G+     ++ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLVGV--DRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  LTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR    +   +     LID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +    G   V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|187925446|ref|YP_001897088.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
 gi|187716640|gb|ACD17864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           phytofirmans PsJN]
          Length = 475

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 190/467 (40%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + +++  +    I G ++          +S DSRS  P + F AIKG  +D HDF+    
Sbjct: 6   DAMFSLREAAALISGATVIGDEYVTFERVSTDSRSAGPGDLFVAIKGDRFDAHDFLPDVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +    V++            +P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVTAVLITRTPQDWT----VPALKVTDTRVGLGALARGWRRKFSMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++        A  G++NN IG+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGADARLATAGNFNNDIGLPLTLFRLHAAHQLAVVELGMNHPGETLEL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L   G      DD++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALTPEGVAVFPADDAYASIWR-- 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I  F  +          K     + + +      +EV    +G H A N L 
Sbjct: 240 -VAATGSRIMDFALNSAERITEAAVKGTFAGNVLSIDTPEGQIEVTLQVLGDHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  +         T+ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKQAVLGTLAGATVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+   +FH ++        I  ++  G        A
Sbjct: 359 DVLASRAA----PRVLVMGDMGEVGDNGPAFHREIGAYAKERGIDALYAMGDASRDACTA 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                  H+   +  L   +Q +       ++VK S      R+++ 
Sbjct: 415 Y--GASAHHVADIGTLVAQLQQAGFGSTATLLVKGSRFMQMERVVDA 459


>gi|169632243|ref|YP_001705979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii SDF]
 gi|169151035|emb|CAO99681.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii]
          Length = 466

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 203/470 (43%), Gaps = 25/470 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W    L QA QG+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      
Sbjct: 14  WIAQQLQQATQGYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAAN 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTT 122
           G  + +V   + A      I    V D   AL +L    R ++ +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLINRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++    A 
Sbjct: 189 QPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AA 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I SFG     D    + +   + +  ++     S  V     G H  QN    +  
Sbjct: 246 KSHQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++  +K L      +GR    +    +     ID++YNANP SM       +Q
Sbjct: 304 ALALGVSLEDIVKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RS 421
           +     G ++ V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S
Sbjct: 356 VLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAGLPLDHIVAVGQFASAALEGAGLHS 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
             +   +T      F+ + +          + K S       L+  L+E+
Sbjct: 416 TKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|116670127|ref|YP_831060.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
 gi|116610236|gb|ABK02960.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arthrobacter sp. FB24]
          Length = 491

 Score =  226 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 133/479 (27%), Positives = 209/479 (43%), Gaps = 20/479 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   +T  ++ +   G      P    + +  DSR       + A  G   DGHDFI  A
Sbjct: 1   MIA-FTAAEIAEITDGRL-AADPTITPSAVVTDSREATEGSLYVAKPGESADGHDFIGAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---------AARLRSKATII 111
            ++GA L +V  +     G+   P   V D + A+  LA           A   ++ T+I
Sbjct: 59  FERGAVLALVEREGPDGAGAP-YPAIVVKDAVLAMGALAAESVRRIRARRAAEGTEFTVI 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTTK++L   LS+   T +  GSYN  +GVPLT+ +   D  + + E+G + 
Sbjct: 118 GITGSAGKTTTKDLLAGILSAEGNTVSPQGSYNGEVGVPLTVFQAGFDTRYLVIEMGATG 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +G IR+L  +VRP I V+  I  AH   F G++ IA AK E+ E L  +GT  +N DD  
Sbjct: 178 IGHIRYLADMVRPSIGVVLGIGTAHAGEFGGVDNIAVAKGELLEALPDSGTAVINLDDGR 237

Query: 232 FELLKAKSHAL--GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + +++ A   G     +      A   +      +     E+   G++         
Sbjct: 238 VAAMTSRTTANVLGFSAQPADDVPGAALRAVHVETNPAGNPEFELFFPGEAEGHQVRSRL 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                   +     +   A V     A S+         R          T+I+++YNAN
Sbjct: 298 IGAHHVTNLLAAAGAAYAAGVTGERIAASLSTQTAASRWRMERTERPDGVTIINDAYNAN 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM+AA+  L+ +      R  AVLG M E+G+ S   H+ +   +   NIS + + G 
Sbjct: 358 PESMRAALRTLADL--GRGRRTWAVLGAMLELGDESIREHMAVGTQVVRLNISRLVVVGR 415

Query: 410 HVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +L     +         ++E+ D  +  +Q  L  GD+V+ KSSNS G   L + +
Sbjct: 416 EARSLYVSAVNEGSWGDECVFTESADEAYDLLQRELEPGDLVLFKSSNSVGLRHLGDRI 474


>gi|225850024|ref|YP_002730258.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
 gi|225646530|gb|ACO04716.1| udp-murnac-pentapeptide sythetase [Persephonella marina EX-H1]
          Length = 440

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 133/464 (28%), Positives = 219/464 (47%), Gaps = 27/464 (5%)

Query: 5   WTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               ++L+ ++G  +        +    IDSR       F  +KG   DGHDFI  A++K
Sbjct: 1   MKIKEILEIVKGRPLKLRDADKEIKRFIIDSRKAQKDSFFVPLKGSKADGHDFIDDALKK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G+   + + +     G        VDD L AL ++ +  R + K   + ITG+ GKTTTK
Sbjct: 61  GSSGYLTSIETDYKNG------ILVDDTLKALTEIGIFKRKKLK-KAVGITGTSGKTTTK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   LS I + YA  G+YNN IG+PLTL+ +P + + G+FELG S  G+I  L  + +
Sbjct: 114 EILRFLLSDIFRVYATEGNYNNEIGLPLTLSNIPENTEVGVFELGASKRGDISKLVSISK 173

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + V+T++   H+  F   E +   K EIF+G           + S         +   
Sbjct: 174 PEVRVLTSVGHGHIEGFGSFEGVVQGKGEIFDG----------GEISVLPEDLKIYYMDR 223

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +K   +FG S  AD ++ +     E +   V  +   + +        +  N+   L ++
Sbjct: 224 LKKYVTFGISDYADIKISEINITPEGTAGTVSYKNDKIRITVPVYSRALFNNIAAALSVL 283

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +   + + L  F   EGRG      L +G  T+ID+SYNANP S+K AI  LS I
Sbjct: 284 YALDINPVRSAEKLRDFSLPEGRG----KVLRKGSLTVIDDSYNANPLSVKNAIETLSGI 339

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  R+ +LGDM E+G+LS+  HI + + +   +I  + L G         +    +
Sbjct: 340 PS----FRVLILGDMLELGDLSEQMHIKVGKEILSSDIDLILLYGRETYHTYTVIKDKKN 395

Query: 424 VHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLINLLLE 466
            ++ +  + L+  +  S+ D + V++VK S       +I  +L+
Sbjct: 396 SYHFDDKEKLYRKLMDSIKDKECVLLVKGSRGMRMEDIIEKVLQ 439


>gi|301307831|ref|ZP_07213787.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
 gi|300834174|gb|EFK64788.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 20_3]
          Length = 427

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F 
Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257
             E +   K E+++ + ++        ++ +         +         ++ G+  + D
Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L              + QGK   V  H IG +   N+L  + +        +   +A+
Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +LGD
Sbjct: 294 AAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H ++ E +       V+L G H   +              T + +   +
Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + G  +++K S+S G  +L ++L
Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|90580224|ref|ZP_01236031.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
 gi|90438526|gb|EAS63710.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Vibrio
           angustum S14]
          Length = 460

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 202/473 (42%), Gaps = 31/473 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      +  +S D+R+I  +  F A+KG  +D HDF   A + GA 
Sbjct: 6   LSQLASVLNAELIG--ADVSIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKENGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122
            ++V+  +      + +P   V D   AL  +    +     +     +A+TGS GKTT 
Sbjct: 64  ALLVSKPL-----PVELPQLVVSDTRIALGMMGAWLKAQMTEKYGLQTVALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    L++  +  A  G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV
Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEISYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A+I  IA AHL  F  ++ +A AK EIFEGL + GT  +N + +   L +      
Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINLESNDLALWQPLLADH 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T  +      AD+   + K  ++               +   +      N+   L  
Sbjct: 239 QVLTFSTDS--HQADYFAEEIKITTQGLACFTMCTPIGKIDI--NLALAGIHNVSNALAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++  +   T     +          R           LID++YNA+ A++KAAI VL+ 
Sbjct: 295 AALTVSLGATLADVKAGLETMANVKGRLDITEPCAGLRLIDDTYNASVAAVKAAIDVLAS 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EG+R  + GDM E+GE S + H ++ E      +  V   G     + +      
Sbjct: 355 F----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL----N 406

Query: 423 HVHYSETMDGLFLFIQSSL-----VDGD---VVVVKSSNSCGFYRLINLLLEE 467
              +      L L ++  L             V+VK + S     +I  L E+
Sbjct: 407 QGQHFSDKGALILSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459


>gi|313139795|ref|ZP_07801988.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313132305|gb|EFR49922.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 513

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 218/507 (42%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 1   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLR--SK 107
           GHDF+  A + GA + +V  ++ A      +    V D + AL  LA    AAR    + 
Sbjct: 60  GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAAGTP 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+
Sbjct: 115 FTLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN 
Sbjct: 175 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 234

Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274
           DD+    +   +    +                   GKS        +       S+   
Sbjct: 235 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 294

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 295 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 354

Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 355 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 414

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 415 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 474

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 475 ALAGDHDDTVVLLKGSHASGLSALAQR 501


>gi|258620872|ref|ZP_05715906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
 gi|258586260|gb|EEW10975.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM573]
          Length = 453

 Score =  226 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALSA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR    +   +     LID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +    G   V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|237736128|ref|ZP_04566609.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
 gi|229421681|gb|EEO36728.1| histidinol-phosphatase [Fusobacterium mortiferum ATCC 9817]
          Length = 426

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 104/437 (23%), Positives = 190/437 (43%), Gaps = 30/437 (6%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  + +DSR I     FFAI     +G+ +I   +++GA LV+ +             V
Sbjct: 19  EILKVVMDSRKIEKDSLFFAI----NNGNKYIDEVLERGATLVIAD-----DYSGDDSRV 69

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D + A+  LA   R      +IAITGS GKTTTK+M+   LS   +     G+YNN
Sbjct: 70  IVVEDTIKAMQDLAQEYRKALGVKVIAITGSNGKTTTKDMIYSVLSQKYRCKKTEGNYNN 129

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+P T+ ++    +  + E+GMS  GEI  L  + +P  A+IT I  +HL      E 
Sbjct: 130 HIGLPFTILQLDDTDEVSVLEMGMSGFGEIDRLCEIAKPDYALITNIGDSHLEFLKTREN 189

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  AK EI + +                ++    + L   +  + G  KN   ++  +K 
Sbjct: 190 VFKAKGEIIKYVVSENL-----------IIFGDDYYLKNLSGITVGYEKNCKKRIENFKD 238

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E     ++          +  G H   N  M + +   L    +   K     +    
Sbjct: 239 TDEGIEFSLEGN----NYKINLNGKHNCINGAMAVVVGMSLDLTSEEIQKGFDNLNLTPM 294

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +     + +G    I+++YNA+P SM+ ++    ++  + +  +IAVLGDM E+G+  
Sbjct: 295 RFQ----KIVKGETLYINDAYNASPISMRYSLETFDKL--YNDRTKIAVLGDMLELGDKE 348

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             FH ++ +      +  +++ G  +    + + ++  +  S   + +   I+ S+    
Sbjct: 349 IEFHREIIKKALDIKVDRIYIYGERMQKAYELMKQNKKIITSLDKNFIRESIKESIKGSK 408

Query: 446 VVVVKSSNSCGFYRLIN 462
            +++K S       +I 
Sbjct: 409 AILLKGSRGMKMEEIIE 425


>gi|78188035|ref|YP_378373.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           chlorochromatii CaD3]
 gi|78170234|gb|ABB27330.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 476

 Score =  226 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 117/472 (24%), Positives = 197/472 (41%), Gaps = 16/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN----GISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M      +DL +A+                   + IDSR ++    F A+ G   DGH +
Sbjct: 1   MKATLQRNDL-EAVGELVFHGEAPPSFELAEPHVVIDSREVSEGGLFVALHGERTDGHRY 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIA 112
           +    Q GA   +VN     + G    P       V+D +  L  LAV  R      I+A
Sbjct: 60  VNDVFQHGATWAMVNRSWYEAEGHPLPPHHKGFLVVEDTVAGLQHLAVRYRNTFSIPIVA 119

Query: 113 ITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           I GS GKTTTKEM+     S         G+ NNH+GVPLTL +M    +  + E+G++H
Sbjct: 120 IGGSNGKTTTKEMVAAVLASDSSAVSMSQGNRNNHLGVPLTLLQMRHSTERAVVEVGINH 179

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  L  LV P   ++T I   HL     ++ +A A+ ++++   + G       D  
Sbjct: 180 PNEMAMLAELVAPTHLLLTNIGHEHLEFLGDLDGVAKAETQLYDYARQHGATAFINADD- 238

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E L+A +  +  +  YS  ++ ++           +     + +     E     + + 
Sbjct: 239 -ERLRAAAEGMPFRIDYSLHEAVDSLVWAEDVTVERDGRLSFLLVTKGRSEQERLRLHFT 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANP 350
              N+L  +   ++      +           +      R   +  G   L++++YNAN 
Sbjct: 298 GRHNVLNAVAAATVGLQFGISLHHICEGLAGLQPAPGWKRLEVVEVGGVRLLNDTYNANS 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM+ AI  L  +     GRRIAV+GDM E+G+ ++  H  +A  +    ++ ++  G  
Sbjct: 358 DSMRRAIDALCDMP--CNGRRIAVVGDMLELGDAAEVEHQAVAHYIQRSLVTKLFTFGTQ 415

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             A+    P   +  YSE    L   +   L +GDVV+VK S       +++
Sbjct: 416 AAAICRHAPELCYGSYSE-HSALLDDLLHVLSEGDVVLVKGSRGMRLELIVD 466


>gi|255022984|ref|ZP_05294970.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J1-208]
          Length = 418

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 119/428 (27%), Positives = 194/428 (45%), Gaps = 15/428 (3%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           + F    G   DGH+F+  A + GA       D+         PV  V+D L AL +LA 
Sbjct: 1   DLFVPFVGNVRDGHEFVNQAREMGAVATFWQKDV--PNPPTDFPVILVEDTLLALQELAA 58

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               + K  +IAITGS GKTTTK+++   + +  K +   G++NNHIG+P T+  MP D 
Sbjct: 59  KYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDT 118

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+GM+H  EI  L+ + +P IA+IT I  AH+      EEIA AK EI  G    
Sbjct: 119 EVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAG---- 174

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       E L    +  G     +FGKS+ A+    + +  +E +      +   
Sbjct: 175 LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTCFITNWE-PE 232

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+    IG H   N +  +     +  + +    AL           R      +    
Sbjct: 233 LEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNME---RSKSRLEWITTKSGAR 289

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +++++YN++P ++K  +     +   G+  +  VL DM E+G+LS   H + AEVL    
Sbjct: 290 ILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLADMLELGDLSTKLHQESAEVLESDT 348

Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I  V+L G  + A     +A      VH+ +T + L   + S +   + ++VK S   G 
Sbjct: 349 IEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLSEIKGNEWILVKGSYGMGL 408

Query: 458 YRLINLLL 465
             ++  L+
Sbjct: 409 KDVVENLI 416


>gi|212697007|ref|ZP_03305135.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676005|gb|EEB35612.1| hypothetical protein ANHYDRO_01572 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 459

 Score =  225 bits (574), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 124/465 (26%), Positives = 193/465 (41%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   + + + G      P+     + G+SIDSR+I     +  I G  +DG  FI     
Sbjct: 5   SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+   +++ +      S++IP   VDD   AL  LA A R +    IIAITGS GKTT+
Sbjct: 63  AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKKLDIKIIAITGSNGKTTS 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS   K     G+ NN IG+PLT+     D D G+ E+G    GEI  LT++ 
Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGLPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+IT I  AHL      E IA AK EI EGL+  G    N DD   + +       
Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLPSYDIK 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   SFG     DF++   +     +        K        +G H   N  + + I
Sbjct: 242 --QKTISFGMGDKVDFKVEAREY----TSTSTNFSYKDENYSVPLLGSHQVYNGALAVLI 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     D     LS               + +  F ++D++Y +NP S+K  + +   
Sbjct: 296 GKLFDLSYDQIKVGLSKSS----NNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGF 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           +  +     I VLGDM E+G+   + H      +    I++    G     +  A   + 
Sbjct: 352 LDGYLNK--IVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|303236845|ref|ZP_07323424.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
 gi|302483013|gb|EFL46029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella disiens FB035-09AN]
          Length = 433

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 17/435 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F   A++KG    +++    A  G+    +  V 
Sbjct: 16  ITTDSRECPQGSIFIALKGASFNGNKFAKMALEKGCSYAIIDEKEYAEEGND--RLILVK 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  K+A   R      +I ITG+ GKTT+KE+++  LS         G++NN +GV
Sbjct: 74  DALVAFKKIARLHRREFHIPVIGITGTNGKTTSKELISAVLSEKYNVLHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLDGKHEIAVIEMGASHQGDIKKLVEYVEPTCGLITNVGRAHLEGFGSFEGVKLT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+    +     +     L   +     + I S+G++   + Q          
Sbjct: 194 KGELYDYLKANDCLLF--LNESNPDLSEMAAQRNFERIISYGQNDMVNVQGEIIDCAPFL 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +   ++  +  EV+ H +G +   NML  + +    +        AL  + P   R + 
Sbjct: 252 HFRWREVGSEWKEVMTHLVGAYNLDNMLAAIALGLHFSVAPQQICHALETYVPSNNRSQL 311

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    L+ ++YNANP+SM AAI     ++   +   +A+LGDM E+GE++   H
Sbjct: 312 TETVHNK----LVVDAYNANPSSMVAAIENFRLMNVENK---MAILGDMRELGEVTDVEH 364

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + E L    +++VWL G +         +         ++ +   I  +   G  +++
Sbjct: 365 QKVVEQLKAAGLTNVWLVGENFGKTNTDFKK------FHDVEEVKAEIAKAQPQGHYILI 418

Query: 450 KSSNSCGFYRLINLL 464
           K SN    + L  LL
Sbjct: 419 KGSNGIKLFELPTLL 433


>gi|255012790|ref|ZP_05284916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. 2_1_7]
 gi|262382745|ref|ZP_06075882.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298374305|ref|ZP_06984263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
 gi|262295623|gb|EEY83554.1| hypothetical protein HMPREF0103_1795 [Bacteroides sp. 2_1_33B]
 gi|298268673|gb|EFI10328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_19]
          Length = 427

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F 
Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257
             E +   K E+++ + ++        ++ +         +         ++ G+  + D
Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L              + QGK   V  H IG +   N+L  + +        +   +A+
Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +LGD
Sbjct: 294 AAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H ++ E +       V+L G H   +              T + +   +
Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + G  +++K S+S G  +L ++L
Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|330469293|ref|YP_004407036.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
 gi|328812264|gb|AEB46436.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Verrucosispora maris AB-18-032]
          Length = 474

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 125/478 (26%), Positives = 198/478 (41%), Gaps = 23/478 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++  A+ G  +   P   V G +  DSR +     F A  G   DGHD+   
Sbjct: 1   MIAL-SLAEIASAVDGRLVAADPTAQVTGSVEFDSRKVTSGGLFVAFDGEKVDGHDYAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           AVQ GA  V+   ++        +P+  V D L A+ +LA A   R  + T+I +TGS G
Sbjct: 60  AVQAGAAAVLGTREVP------GVPMVVVADALTAMARLARAVVDRLPQLTVIGLTGSSG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+++    + + +T A  GS+NN +G P T  +      + + E G   +G +R+L
Sbjct: 114 KTTTKDLIAQLTARLGETVAPPGSFNNELGHPYTALQAVPSTRYLVLEKGARGIGHVRYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I+V+  +  +H+  F   E IA AK E+ E L   G   LN DD   + +  +
Sbjct: 174 CEVAPPRISVVLNVGVSHIGEFGSQENIALAKGELVEALPADGLAVLNADDPLVDAMAGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + A     +  +G++ +AD +               +     S  V     G H   N L
Sbjct: 234 TTA----RVVRYGEAAHADVRAVDVTLDERGRPAYTLVTPEGSATVRLALTGRHQVWNTL 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     AL        R             T+ID+SYNANPASM  A+
Sbjct: 290 AAAAVARELGMPLVEIAVALGELGLVSTRRMD--VFERTDGVTVIDDSYNANPASMSVAL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +      R  AVLG M E+GE     H ++  + +   +  + + G     +   
Sbjct: 348 RALAGVGA--GRRTFAVLGYMAELGEFEAQGHTEVGRLAAELGVDRLLVVGEAAAPIHHG 405

Query: 418 LPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                                  ++S L  GDVV+VK S     + + + L  +  A 
Sbjct: 406 ATSVGDWGGESVLLTDQAAAVQVLRSELRPGDVVLVKGSR-YRTWEVADALRADAVAT 462


>gi|116626355|ref|YP_828511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116229517|gb|ABJ88226.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 442

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 130/458 (28%), Positives = 203/458 (44%), Gaps = 24/458 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + +AI   S          G S+D+R+    + +FA++GP++DGHDFI  AV+K A 
Sbjct: 5   IQTVARAIGASSEAAARSAS--GWSVDTRTQIAGDVYFALRGPNHDGHDFIAAAVEKRAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            +VV                 V D L AL  L   AR     T+I +TGS GKTTTK+ +
Sbjct: 63  ALVVERAYGVPGE------LVVPDTLRALQNLGAWARRNWGGTVIGVTGSAGKTTTKDAI 116

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+S       +G++NNH+GVPL+L R+P     G+ E+GM+H GEIR L  + RP I
Sbjct: 117 AHLLASEMPVGKTVGNFNNHVGVPLSLLRLPDGCRAGVIEMGMNHSGEIRELGAIARPEI 176

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +  AH+  F  IE IA AK E+ EGL   G   LN DD       A      I  
Sbjct: 177 GVVTNVGYAHVEFFDSIEGIALAKRELIEGLTPDGVAVLNADDPRVAGFSAVHPGRSI-- 234

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG S++A+ +       +  +      +   ME      G H   N+L  + + ++ 
Sbjct: 235 --TFGLSEHAEIRAEDVAAHAGGTR----FRALGMEFETGLSGRHAVMNLLAAIAVATVF 288

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                    A++ F   + RG+R           + ++ YN+NP + ++ I VL +    
Sbjct: 289 GIAPARMRDAVASFAAGKMRGERTEHNG----IVIWNDCYNSNPEAAQSMIDVLRETPAR 344

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVH 425
               RIAVLG+M E+G  +   H  +    + + +  +        A+ + A    +   
Sbjct: 345 R---RIAVLGEMLELGHAADELHRQVGRYAAEHGVDLLIGVRGAARAMVESAARAGLDAR 401

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + E         +     GD V+ K S      + +  
Sbjct: 402 FFEDPAEAGDRARELAHAGDAVLFKGSRGVKVEKALER 439


>gi|224282637|ref|ZP_03645959.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 150/507 (29%), Positives = 218/507 (42%), Gaps = 50/507 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIG--------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M P+ T   + +A+QG  I                     DSR +     F AI G   D
Sbjct: 7   MMPM-TVRQVAEAVQGRLIVPQTGDGVEDGADALATSAVSDSRQVREGSVFVAIAGERVD 65

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV---AARLR--SK 107
           GHDF+  A + GA + +V  ++ A      +    V D + AL  LA    AAR    + 
Sbjct: 66  GHDFVARAGESGAVVALVQHEVDAP-----VAQIVVPDTVDALGLLAKANIAARRAAGTP 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T+I ITGSVGKTTTK+++   LS++  T A +GS+NN IG+PLT  ++  D  F + E+
Sbjct: 121 FTLIGITGSVGKTTTKDLMAALLSTLGSTVAPVGSFNNEIGLPLTALKVGRDTRFFVAEM 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G SH+GEI  LT +  P IAV+  +  AHL  F  +E IA AK+EI +GL   G   LN 
Sbjct: 181 GASHVGEITRLTTIAPPDIAVVLKVGCAHLGEFGSVERIAQAKSEIVQGLVPDGLAVLNA 240

Query: 228 DDSFFELLKAKSHALGIKTIYS-------------FGKSKNADFQLRKWKQCSEQSWMEV 274
           DD+    +   +    +                   GKS        +       S+   
Sbjct: 241 DDAHVAAMAPLAPQGHVFWFGMAGDDAEASAGNAASGKSDALFASDVRTDDGDRPSFTLE 300

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G +  V     G H   N L    +  +L   + +  + LS                
Sbjct: 301 RADGGTAHVQLAIRGTHNVMNALAAASVAHLLGVPLQSIAETLSRQSRISPHRMAVSTVR 360

Query: 335 NQGF-FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             G  FTLID+S+NANP SM+A +  L++     +  RIAVLG M E+G    + H  + 
Sbjct: 361 RGGMSFTLIDDSFNANPDSMRAGLDGLARWRSDEDPYRIAVLGAMLELGGDESALHEGIG 420

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIH------------VHYSETMDGLFLFIQ 438
           E  +   I  V   G    H  AL  AL +               VH+   +D     ++
Sbjct: 421 EYAAGLPIDAVIAVGNDDEHFDALASALAKGARKRRDDSDGNTPEVHWVHDIDQADTLVR 480

Query: 439 SSLVDGD--VVVVKSSNSCGFYRLINL 463
           +   D D  VV++K S++ G   L   
Sbjct: 481 ALAGDHDDTVVLLKGSHASGLSALAQR 507


>gi|240081130|ref|ZP_04725673.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA19]
 gi|240124141|ref|ZP_04737097.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 452

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|254523673|ref|ZP_05135728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
 gi|219721264|gb|EED39789.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Stenotrophomonas sp. SKA14]
          Length = 464

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 194/470 (41%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +   +     G   G      ++ +S D+RS+ P   + A++G  +DGHDF   A  +
Sbjct: 5   LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFATDAQAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V       +  + +P   V D   AL K+A   +   +  + AITGS GKT+ K
Sbjct: 61  GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRETEVFAITGSNGKTSVK 115

Query: 124 EMLTIALSSIKKTYA-----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            +L   L  + +          G+ NN IG+PL +   P D D+ ++E+G    G+I +L
Sbjct: 116 SLLLSILQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP  A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +  
Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235

Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +  +G    AD   R  +  ++ S   +        VV    G H   N L
Sbjct: 236 FVGTPARCRVLRYGLEHTADITARDIRAGAQGSQFTLVSPMGEARVVLGLPGRHNVSNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +      D+      L+   P  GR   ++         L+D+SYNANP S+ AAI
Sbjct: 296 AAASLALAAGVDLALIAAGLAEAQPVPGRQIAHQLRNG---AVLVDDSYNANPGSLAAAI 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+     G      VLGDM E+G  +++ H           +  ++  G    A   A
Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGLRARASGLKRLYALGPLSAAAAAA 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +  T D L   ++  L  G   +VK S       ++  LL +
Sbjct: 409 FGEGGR--HFTTHDALSQALKDELHPGVRCLVKGSRGSAMDTIVKALLAQ 456


>gi|293610703|ref|ZP_06693003.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827047|gb|EFF85412.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 466

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133
                 + I    V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  -----DVDIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G E I  AK+EI+  +   G   +   D F   +     A     I +FG  
Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D      +   + +   +     S  V     G H  QN    +     +   ++  
Sbjct: 255 VGGDVYATDVELLPQSTNFSLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L      +GR    +    +  +  ID++YNANP SM       +Q+    +G ++ 
Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGVKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  V   +T   
Sbjct: 367 VMGDIGELGDSSWQEHYDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|323527434|ref|YP_004229587.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
 gi|323384436|gb|ADX56527.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           sp. CCGE1001]
          Length = 475

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 112/467 (23%), Positives = 190/467 (40%), Gaps = 18/467 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           N ++T  +    I G ++          +S DSRS  P + F A+KG  +D HDF+    
Sbjct: 6   NAMFTLREAAALIPGATLVGDESAAFERVSTDSRSAGPGDLFVALKGDRFDAHDFLADVA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +    V+V            +P   V D    L  LA   R +    ++A+TGS GKTT
Sbjct: 66  ARNVSAVLVARVPDGWT----VPAVRVADTRAGLGALARGWRRKFGMPLVAVTGSNGKTT 121

Query: 122 TKEMLTIALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KEM+    ++     +  A  G++NN +G+PLTL R+       + ELGM+H GE   L
Sbjct: 122 VKEMIASIFAAAVGAAERLATAGNFNNDVGLPLTLFRLNAAHRLAVVELGMNHPGETSLL 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+      H    + +E +A   A +   L+  G      +D++  + +  
Sbjct: 182 AKIAEPTVAVVNNAQREHQEFMATVEAVALEHASVIHALKPEGVAVFPANDAYASIWR-- 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I  F  +              +   + ++    +++V    +G H A N L 
Sbjct: 240 -VAATGNRIIDFALNTAERATEAAVTGTFDGGLLSIETPEGALQVSLQVLGDHNAHNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAAI 357
                      +D   + L  F   +GR +  R          +ID++YNANP SM+AAI
Sbjct: 299 ATSAALAAGVSLDAIKRGLESFGAVKGRLQVKRAALGTLAGAKVIDDTYNANPDSMRAAI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+  +      R+ V+GDM E+G+    FH ++        +  ++  G         
Sbjct: 359 DVLASHAS----PRVLVMGDMGEVGDNGPEFHREIGAYAKERGVDALYAMGDASRDAC-- 412

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           +      H+   +  L   +Q +        +VK S      R+++ 
Sbjct: 413 IAYGASAHHVADVGTLVAQLQQAGFGAAATFLVKGSRFMQMERVVDA 459


>gi|332531945|ref|ZP_08407829.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038572|gb|EGI75015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 460

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 146/470 (31%), Positives = 217/470 (46%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+  F  L   +     G      V  I+ D+R++   E F A+KGP++DGH FI  A
Sbjct: 1   MIPM-DFDWLANVLTTDYQGD--NQHVLNINTDTRTVCGGEVFLALKGPNFDGHKFIAEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA  V+V   +      + IP F V D   AL  +  A   +     IAITGSVGKT
Sbjct: 58  KQKGAIGVIVQHKV-----DVDIPQFIVSDTRIALGAIGTAVMAQVAPKTIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    LS      A  G++NN IGVPLTL R+     F + ELG +HLGEI + T 
Sbjct: 113 TVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +AV+  +A AHL  F  +  +A AK EIF+GL+  G   +N D  F +    K  
Sbjct: 173 MTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLDKLE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +K    F  ++  D         +  ++   +  + K + V     G H   N L+ 
Sbjct: 233 GRNVKC---FSTTEKLDIWAENITLDANARASFTLCTKNKQVPVTLALPGKHNISNALIA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S     ++    AL+     +GR      +      T++D++YNAN  S+KAAI +
Sbjct: 290 AALTSEFDVTLEEIANALATMGDVKGRVNLIEVS---DLLTVVDDTYNANVKSVKAAIDL 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           LS +    +G RI  LGDM E+GE ++ +H ++ E      I  ++  G       D   
Sbjct: 347 LSDM----QGHRILALGDMGELGEDARKYHQEVGEYALEQGIDELFTLGVLSKYASDVFE 402

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466
                 +  + + +   IQ S+        +VVK S S     L+  L+ 
Sbjct: 403 LPNR--HFSSREQMQQKIQESINKVNKKTTIVVKGSRSSRMELLVTDLVN 450


>gi|317164862|gb|ADV08403.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 452

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SM+AA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|139437201|ref|ZP_01771361.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
 gi|133776848|gb|EBA40668.1| Hypothetical protein COLAER_00340 [Collinsella aerofaciens ATCC
           25986]
          Length = 474

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 196/469 (41%), Gaps = 16/469 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++L  A    ++         G  IDSR +     F A  G + DG+DF   AVQ GAG
Sbjct: 6   VNNLAAATGARTVTGEADQVCRGCVIDSRQVEEGTIFVAFPGENVDGNDFASRAVQSGAG 65

Query: 67  LVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            VV+  +  A +          +   DD    L +LA   RL     ++ ITGS+GKTTT
Sbjct: 66  AVVMTREPEAELVSLAQDKGCAILLTDDPEEFLLRLAHTYRLELGCLVVGITGSIGKTTT 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K++L   L+   + +A  G++NN IG+PLT+   P D +  + E+GM+H  EI  L+   
Sbjct: 126 KDVLAAVLAKRYRVWATKGNFNNLIGMPLTVLSAPADTEVLVLEMGMNHFHEIERLSQSA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL----NYDDSFFELLKAK 238
            P++A+++ I  +H+      E IA AKAEI +G+   G          +D F   ++  
Sbjct: 186 NPNLAIVSKIGTSHIGILGSRENIARAKAEIVQGMCAAGDFLPLLVLGGEDDFTPFIRDT 245

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   +   G S + + + R  +   E       L     E +   +     Q++  
Sbjct: 246 FAQPAGIDVMLAGVSDDDEVRARDVRVDDEG-RPVFTLDFGQGETIDTMLAIPGVQSVPN 304

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +   ++      T  +  + F      G R      +    +ID+SYNA+  SM A + 
Sbjct: 305 AVKAAAVAYRLGVTPEQIDAAFRGLTITGHRQEIKRAKSGARVIDDSYNASAESMAAGLD 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDA 417
           +L  +S    G R+A+LG+M EMG+ +   H  +    +   +  +    G     + DA
Sbjct: 365 LLCSLS--CTGSRMAILGEMGEMGDEAPRMHELVGAYAAAKKLDMLACVGGELAQLMADA 422

Query: 418 LP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                     +        +   +  +L   DV +VK S      R + 
Sbjct: 423 ARMMGMDEDRIQVFSDYQQVLDRMGGALEKHDVALVKGSRFVELDRFVE 471


>gi|325123729|gb|ADY83252.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 466

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 126/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133
                 + I    V D   AL +L    R + S+  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  -----DVDIAQLVVADTRLALGQLGAYRREQNSQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G E I  AK+EI+  +   G   +   D F   +     A     I +FG  
Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D      +   + +   +     S  V     G H  QN    +     +   ++  
Sbjct: 255 VGGDVYATDVELLPQSTNFNLHTPQGSSAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L      +GR    +    +  +  ID++YNANP SM       +Q+    +G ++ 
Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGVKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  V   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAAFEGADSHSNKVKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|309792357|ref|ZP_07686825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
 gi|308225578|gb|EFO79338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oscillochloris trichoides DG6]
          Length = 493

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 128/465 (27%), Positives = 201/465 (43%), Gaps = 43/465 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------------------ 72
            IDSR + P   F A+ G   +GH F+   + +GA   +V+                   
Sbjct: 35  VIDSREVEPGTLFVALAGERTNGHTFLPDVIARGALGALVSRTEIEARTTILARTPRRWA 94

Query: 73  -------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                    + S       +  VDD L AL +LAV  R +   T++ ITGSVGKT+TKE 
Sbjct: 95  LVNPVTGAGLDSATPGVCLLIAVDDPLMALQRLAVYHRRQLTPTVVGITGSVGKTSTKEA 154

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS    T     S+N+   VP TL ++    +  + E+GM   GEIRFL  L RP 
Sbjct: 155 LAALLSQRFCTLKSKRSFNSEATVPTTLLQLAPAHEVAVLEMGMWAPGEIRFLADLARPQ 214

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T + P HL      E I  AKAE+ E L + G   LN DD     ++  ++A    
Sbjct: 215 IGLVTNVGPTHLERLKSQEAIWYAKAELVEELPRDGWAVLNADDPLVWAMRDMTNA---- 270

Query: 246 TIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++S+G + +A     + +    +   M V  Q + + +    IG H     L  + +  
Sbjct: 271 RVFSYGLAPHATLWANQVESYGLDGIAMRVHYQDQVISMRLPLIGRHSIYLALAAMSVGL 330

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL  +    I  L+          R R    Q   TLID++YNA P S  AA+ +L    
Sbjct: 331 ILGMEWPAMIAGLTD----PAAQARLRVVAGQHATTLIDDTYNAAPISTLAALDLL---- 382

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               GRR+A+LGDM E+G   +  H  + +  +      +   G   + + +A  ++   
Sbjct: 383 GATPGRRVAILGDMLELGSAEEEGHRQVGQRAAQV-ADLLVTVGQRAIWIAEAARQAGMP 441

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             H+    T       ++  L+ GD +++K+S       ++  L 
Sbjct: 442 SAHILVCMTNAEAIASVRPRLMPGDHILLKASRGMALEEIVVALQ 486


>gi|268597241|ref|ZP_06131408.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268682766|ref|ZP_06149628.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
 gi|268551029|gb|EEZ46048.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae FA19]
 gi|268623050|gb|EEZ55450.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID332]
          Length = 463

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANIAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|302344208|ref|YP_003808737.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
 gi|301640821|gb|ADK86143.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Desulfarculus baarsii
           DSM 2075]
          Length = 466

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 136/462 (29%), Positives = 210/462 (45%), Gaps = 15/462 (3%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           ++ A      G  P   + G+  DSR+IAP + F A+KG ++DGHDF+  A+Q GA   +
Sbjct: 9   VIAATGAELTGQAPAQAMAGVCTDSRTIAPGQLFVALKGENFDGHDFVEKALQAGAAAAL 68

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V      +  +    +  VDD   AL +LA A R    A I+A+TGS GKT+TKEM+   
Sbjct: 69  VERGF--NPTAAGQCLLRVDDTTKALGRLAAAWRAALPARIVAVTGSNGKTSTKEMIAQV 126

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    + +   G+ NNHIG+PLTL  +  +    + E+GM+  GEI +L  + RP +AVI
Sbjct: 127 LGQRFEVHKTKGNLNNHIGLPLTLLALRPEHQVCVAEMGMNAPGEIAYLAAIARPDVAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + PAHL     IE +A+AKAE+F+ L       +N DD        K        + +
Sbjct: 187 TNVGPAHLGPLGSIEAVAAAKAELFQALGPEAVAAVNLDDPLLAPWADKL----PCRVIT 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSILTA 308
           FG    A  + R       +    +++  +  E       G H  +N L    + + L  
Sbjct: 243 FGLDPKAQARARDVSAFGSRQAFTMEIGDQPAERVRLAAPGLHNVRNALAAAAVGAGLGL 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +       +  F P +GR         +G   LID++YNANPAS+ A +  L+ +S  G+
Sbjct: 303 EAWQIKDGVEAFTPTKGR---LENVFTKGGPLLIDDTYNANPASVAAGLQSLAALSKWGK 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HV 424
           G    ++GDM E+G  +   H  +      +    V   G     +      +       
Sbjct: 360 G-HGLIMGDMGELGPEAPRLHRQVGRQAVEFGCKFVLAVGQMADEVVAGAREAGLAAPKA 418

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +D L       + +G  V+VK S +    R+I  L E
Sbjct: 419 LAFAEVDQLIDASPRVIGEGWTVLVKGSRAARMERVIQRLQE 460


>gi|293192324|ref|ZP_06609435.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
 gi|292820239|gb|EFF79233.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces odontolyticus F0309]
          Length = 465

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 210/467 (44%), Gaps = 14/467 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G      V G +  DSR       + A +G   DGH F+  A  +G
Sbjct: 4   SAQWIAVAVSGRLVGN--DVPVTGPVVTDSREAQAGSLYVARRGESADGHAFVSGAATRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITGSVGKT 120
           A  V+V  ++  +     +    V+D   AL  LA A   +        +IA+TGSVGKT
Sbjct: 62  AVAVIVEHEVDEA-----VTQIVVEDSTEALGSLARAHVEKLRSGGDLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   +S    T A   S+NN +G+PLT+          + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQIMSEDGPTVAPKLSFNNEVGLPLTVLLADETTRHLVLEMGASGPGHITYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+ +G    G + LN DD   E +   + 
Sbjct: 177 IVAPDVAIELCVGHAHVGGFGGFEGVAAAKAELIKGTRPGGPVILNTDDPNVEAMAPLAT 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I+   S  +  +   +  +  +    S+  V  +G++   +     +H+A  +    
Sbjct: 237 GRVIRFSASGNERADVVVRDVRLDRADRASFTLVTPEGEAPVELKIVGRHHVANALAAAA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G +++       A            R   +   ++    TLID+SYNAN  SM+A I+ L
Sbjct: 297 GALTLGVGLETVASVLSRARALSPHRMDVHELRVDGTDLTLIDDSYNANLDSMRAGIAAL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + I    + +RIAVLG+M E+GE SQS H  +  +++   +  +   G       +  P 
Sbjct: 357 ASI--GRDSQRIAVLGEMLELGEDSQSLHQQVGALIADAGVDTLIGLGADAHYYLEGAPE 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             H   +               DG VV+VK S     +++ ++L E+
Sbjct: 415 VPHREVAADPQDAARLALEHAEDGAVVLVKGSFGSQSWQVADILREK 461


>gi|59801875|ref|YP_208587.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
 gi|239999610|ref|ZP_04719534.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           35/02]
 gi|240014785|ref|ZP_04721698.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI18]
 gi|240017233|ref|ZP_04723773.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA6140]
 gi|240113342|ref|ZP_04727832.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|240116311|ref|ZP_04730373.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|240118598|ref|ZP_04732660.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|240121308|ref|ZP_04734270.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           PID24-1]
 gi|240126243|ref|ZP_04739129.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|260439872|ref|ZP_05793688.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           DGI2]
 gi|59718770|gb|AAW90175.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           FA 1090]
          Length = 452

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|77361423|ref|YP_340998.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876334|emb|CAI87556.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 460

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 147/472 (31%), Positives = 217/472 (45%), Gaps = 28/472 (5%)

Query: 1   MNPL---WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+   W  + L    QG          V  I+ D+RSI   E F A+KGP++DGH FI
Sbjct: 1   MIPMDFDWLANVLATDYQG------DNQPVLNINTDTRSICSGEVFLALKGPNFDGHKFI 54

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A Q GA  V+V   +      + IP F V D   AL  +  A   +     IAITGSV
Sbjct: 55  AQAKQNGAIGVIVQHKV-----DVDIPQFIVADTRLALGIIGGAVMAQVAPKTIAITGSV 109

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT KEM    LS      A  G++NN IGVPLTL R+     F + ELG +HLGEI +
Sbjct: 110 GKTTVKEMCAAILSVHGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHLGEIAY 169

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T + +P +AV+  +A AHL  F  +  +A AK EIF+GL+  G   +N D  F +    
Sbjct: 170 TTAMTKPDVAVVCNVAAAHLEGFGSLMGVAKAKGEIFDGLKDDGVAIVNCDSEFSQYWLD 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K     +    S  K       +   +  + ++   +  +   + V     G H   N L
Sbjct: 230 KLDGRKVTRFSSSEKLDIWAENISLDE--NARASFTLCTKNAQIPVKLALPGKHNISNAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   + S     ++    AL+     +GR             T++D++YNAN  S+KAAI
Sbjct: 288 IAAALTSEFDVTLEDIANALATMGDVKGRVN---LINVSDLLTVVDDTYNANVKSVKAAI 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +LS +    +G RI  LGDM E+GE ++ +H ++ E      I+ ++  G       D 
Sbjct: 345 DLLSDM----QGHRILALGDMGELGEEARQYHQEVGEYALEQGINELFTLGVLSRYASDV 400

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466
               +   +    + +   IQ+S+   D    +VVK S S     L+  L+ 
Sbjct: 401 Y--GLPNRHFSNREQMLQQIQTSIKKVDKKTTIVVKGSRSSRMELLVTDLVN 450


>gi|330446839|ref|ZP_08310490.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491030|dbj|GAA04987.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 460

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 124/479 (25%), Positives = 203/479 (42%), Gaps = 32/479 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      ++ +S D+R+I  +  F A+KG  +D HDF   A
Sbjct: 1   MIEVQ-LSQLASVLNAELIG--ADTSISAVSTDTRNIPSETLFIALKGERFDAHDFCQTA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGS 116
              GA  ++V+  +      + +P   V D   AL ++    +     +     +A+TGS
Sbjct: 58  KDNGAKALLVSKRL-----PVDLPQLVVTDTRIALGQMGAWLKVEMTQKHGLKTLALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KE+    L++     A  G++NN IG PLTL R+  +  + + ELG +H  EI 
Sbjct: 113 CGKTTVKEISAAILATKGNVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQQEIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T+LV+P +A+I  +A AHL  F  ++ +A AK EIFEGL   G   +N D +   L +
Sbjct: 173 YTTNLVKPDVALINNLAAAHLEGFGSLKGVAKAKGEIFEGLSDGGIAIVNLDSNDLPLWQ 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                  + T  +     +   +          +   +      ++V     G H   N 
Sbjct: 233 PLLAQHQVLTFSATASDADYHAERININA-QGLACFTMCTPIGKVDVNLTLAGMHNVANA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   L A +      L      +GR              LID++YNA+ A++KAA
Sbjct: 292 LAAAALTISLGATLAEVKAGLETMANVKGRLDITEPRAG---LRLIDDTYNASVAAVKAA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+      +G+R  +LGDM E+G+ S + H ++ E      +  V   G     + D
Sbjct: 349 IDVLANF----QGQRYFILGDMAELGDESDNLHREVGEYAQAKQLDCVMTFGRASAVVSD 404

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDG----D----VVVVKSSNSCGFYRLINLLLEE 467
                    +      L   ++  L       D     V+VK + S     +I  L ++
Sbjct: 405 L----NQGQHFTDKTALIALLKQQLQQHFSQPDFEQVTVLVKGARSSKMEDVIAALQDD 459


>gi|213621299|ref|ZP_03374082.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 415

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 197/435 (45%), Gaps = 20/435 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++   
Sbjct: 173 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +        + N+DF        S  +   +Q    S++V+    G H   N L   
Sbjct: 233 DRQVWR--FSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+      GR    + + N     ++D++YNAN  SM AA+ VL
Sbjct: 291 ALSMAVGATLAAVKAGLAALKAVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S++     G R+ V+GDM E+G  S++ H+ + E      I  V  +G     +  A   
Sbjct: 348 SEMP----GYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA--- 400

Query: 421 SIHVHYSETMDGLFL 435
           S    +      L  
Sbjct: 401 SGVGEHFADKAALIA 415


>gi|171462983|ref|YP_001797096.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
 gi|171192521|gb|ACB43482.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Polynucleobacter necessarius subsp. necessarius STIR1]
          Length = 482

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 188/492 (38%), Gaps = 34/492 (6%)

Query: 1   MNPLWTFHDLLQAIQGH-----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M+ + T       + G       +    Q  ++ +  DSR I   E F A+ G  +D HD
Sbjct: 1   MSIMTTLAQAQAMLPGSTLVNVLVEAAQQLTLSRVGTDSRQIDRNELFVALVGERFDAHD 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F+  A + G G  ++++          +P   V +    L  LA A R      +  +TG
Sbjct: 61  FLSDAAKAGTGAALISSQ---DKCPADLPAICVSNTRVGLGNLAKAWRANHPIPLALVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           S GKTT KEM+     +           G+ NN IG+PLTL ++       + ELGM+H 
Sbjct: 118 SNGKTTVKEMIASIFKAAVGEQHTLVTKGNLNNDIGLPLTLLKLRSTDRLAVVELGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE   L  + + +IA+I      H    + +  +A   ++    L   G      D  F 
Sbjct: 178 GETAQLAVIAQANIALINNAQREHQEFMATVAAVAEEHSDAIRTLPSDGVAIFPADSEFA 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            + +  +    +           A   +      +    ++++ +  ++EV  + +G H 
Sbjct: 238 GVWRQAAAGRKVIDFVLSSAQTKASAAVTGCLLSNG--LVQIKSEQGTIEVQLNTLGSHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L    +       ++   + L  F P  GR    +        TLID+SYNANP S
Sbjct: 296 VRNALAASAVGIAAGVSLEKIKQGLESFSPVNGR---MQAKAIDSSRTLIDDSYNANPDS 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ AI  L             +LGDM E+G     FH ++    +   ++ ++  G    
Sbjct: 353 VRVAIDALK----QSGNLSWLILGDMGEVGNQGPEFHREVGAYAAEQGVAKLFALGEQCQ 408

Query: 413 ALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGD-------VVVVKSSNSCGFY 458
                          + H  +   MD L   ++ +L            ++VK S      
Sbjct: 409 FALQGFNEVNKGGETTSHAKHFADMDSLIAQLRDALRSQSSGSNQHLNILVKGSRFMRME 468

Query: 459 RLINLLLEEFPA 470
           R++  LLEE   
Sbjct: 469 RVVQALLEEAKT 480


>gi|229829653|ref|ZP_04455722.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
 gi|229791642|gb|EEP27756.1| hypothetical protein GCWU000342_01750 [Shuttleworthia satelles DSM
           14600]
          Length = 560

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 130/550 (23%), Positives = 209/550 (38%), Gaps = 98/550 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-------------GFVNGISIDSRSIAPQEAFFAIKGPHY 51
            T  ++  A  G  I    +               + G+  D+R +     F    G   
Sbjct: 12  MTLANIAAACGGELIFPAEEPYANGRVKADYERLTIAGVVTDNRQVERDFLFIPFVGEKV 71

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           D H FI  A ++GA   +   D+   +G    P   V+    AL  +A   R + K  ++
Sbjct: 72  DAHRFIPQAFEQGAACSLSEEDLTDPVG----PCIRVESSQRALMDIAAYYRRQLKLPLV 127

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            I GSVGKT+TKEM+   LS         G++NN IG+P+T+ ++       + E+G+ +
Sbjct: 128 GIIGSVGKTSTKEMVASVLSRHYSVLKTEGNFNNEIGMPMTVLKIRDHHQVAVVEMGIDN 187

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            G++  L  + RP+I VIT I  AHL      + I ++K E+F+ L    ++ LN DD  
Sbjct: 188 FGQMSALAAVARPNIVVITNIGEAHLEFMKTRDGILASKTEVFDYLADGASVILNGDDDH 247

Query: 232 F----------------------------------------ELLKAKSHALGIKTIYSFG 251
                                                    E L       G+       
Sbjct: 248 LNCIRRAGGARIIFYGLGVDSSAAAREKDKDKLARLNGQIAEHLAKAKDRDGLADGCFDM 307

Query: 252 KSKNADFQLRKWKQC---------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +   D +    +            E             E V    G H   N L    +
Sbjct: 308 SAAYTDQERLARETYRAENLSALGMEGMSASFITPEGDFEAVIPIPGEHNVYNALAAAAV 367

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D+D     +       GR       L+ G  TLID+ YNANP+SM+A+++VL+ 
Sbjct: 368 GQSLGLDLDEIKAGMETASTISGRAHF----LHLGGLTLIDDCYNANPSSMRASLAVLA- 422

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                +GRRIAVLGDM E+GE + + H +L E  +   I  ++ +G     +      + 
Sbjct: 423 ---RAKGRRIAVLGDMGELGENAPAMHYELGERAAEEGIDMLYAAGALGREIARGASDAS 479

Query: 422 -----------------------IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                                  + ++     D L   +   L +GD V+VK+S+  GF 
Sbjct: 480 LNRREEGAFFAEEGGGAHRREKPMEIYACPDRDALLADLLGRLKEGDTVLVKASHFMGFE 539

Query: 459 RLINLLLEEF 468
            ++  + E +
Sbjct: 540 EVVKAIQESY 549


>gi|89074174|ref|ZP_01160673.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
 gi|89050110|gb|EAR55636.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium sp. SKA34]
          Length = 460

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 202/473 (42%), Gaps = 31/473 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    IG      +  +S D+R+I  +  F A+KG  +D HDF   A   GA 
Sbjct: 6   LSQLASVLNAELIG--ADISIAAVSTDTRNIPSETLFIALKGERFDAHDFCQTAKDNGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR----LRSKATIIAITGSVGKTTT 122
            ++V+  +      + +P   V D   AL  +    +     +     +A+TGS GKTT 
Sbjct: 64  ALLVSKPL-----PVELPQLVVSDTRIALGMMGAWLKAQMTEKYGLKTLALTGSCGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    L++  +  A  G++NN IG PLTL R+  +  + + ELG +H  EI + T+LV
Sbjct: 119 KEMSAAILANKGQVLATAGNFNNDIGAPLTLLRLTPEYQYAVIELGANHQNEIFYTTNLV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P++A+I  IA AHL  F  ++ +A AK EIFEGL + GT  +N++ +   L +      
Sbjct: 179 KPNVALINNIAAAHLEGFGSLQGVAKAKGEIFEGLVQNGTAIINFESNDLALWQPLLAEH 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T  +      AD+   K K  ++               +   +      N+   L  
Sbjct: 239 QVLTFSTDS--HQADYFAEKIKITTQGLACFTMCTPIGKIDI--NLALAGMHNVSNALAA 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++  +   T     +          R           LID++YNA+ A++KAAI VL+ 
Sbjct: 295 AALTVSLGATLADVKAGLETMANVKGRLDITEPYARLRLIDDTYNASVAAVKAAIDVLAS 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                EG+R  + GDM E+GE S + H ++ E      +  V   G     + +      
Sbjct: 355 F----EGKRYFIFGDMAELGEESDNLHREVGEYAQEKQLDCVMTFGHSSAVVSEL----N 406

Query: 423 HVHYSETMDGLFLFIQSSL-----VDGD---VVVVKSSNSCGFYRLINLLLEE 467
              +      L + ++  L             V+VK + S     +I  L E+
Sbjct: 407 QGQHFSDKGALIMSLKQQLQQYSRQPDAETVTVLVKGARSSKMEDVIAALQED 459


>gi|240128811|ref|ZP_04741472.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 452

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 234 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|189184780|ref|YP_001938565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189181551|dbj|BAG41331.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 469

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 132/469 (28%), Positives = 235/469 (50%), Gaps = 18/469 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHY-DGHDFILHAV 61
           +W+  DL  A+      +     VNGI   +S+ I P + F A++  +  DGH F+  A+
Sbjct: 5   IWSAADLTAALG-----VPVNVNVNGIVQFNSKDIQPGDLFIALQSENGGDGHQFVKDAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
            +GA  V+V+  +     + +  +  V++ + AL++LA   R +    T I ITGSVGKT
Sbjct: 60  ARGADAVIVSKLID---NNTNDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKE++    S+  KT+A   ++NN +G+ L LA +P++ ++ IFEL     GE++ L  
Sbjct: 117 STKEIMFKVFSTHYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELCTRSPGELQKLVK 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++  +IAV+T I  AH   F+ +E +  AK EIF GL   G   +N D  FF       +
Sbjct: 177 ILPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFFTKQLEYIN 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LGI  +++FG  + ++ ++  +   ++     + +     ++  +       Q   +  
Sbjct: 237 KLGINNVFTFGTHQLSNSRILNYYYDADNQKSVININCNGYDLQFYTQILGYGQAFNIAA 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAIS 358
            ++      ++       +   +   G+     LN    +  +ID+ YNANPASMK A+ 
Sbjct: 297 VMLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALD 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +L QI    +   +A+LGDM E+G  ++  H++L   +  YNI HV   G  +  + + L
Sbjct: 357 LLDQIKAKRK---VAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVISIGSLMKNVYELL 412

Query: 419 PRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           P  + + +   ++ L    +   L D D V++K SN    ++++  LLE
Sbjct: 413 PAELKLSHYNNINELTVDQLLPLLHDKDYVLIKGSNRMRLWQVVENLLE 461


>gi|326567255|gb|EGE17375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 12P80B1]
          Length = 494

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRAMPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV+  G H+     A+     +  +      L   +   L  G   V+ K S  
Sbjct: 420 ALLEIDHVFTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLFKGSRG 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|78187956|ref|YP_375999.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Chlorobium
           luteolum DSM 273]
 gi|78167858|gb|ABB24956.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlorobium luteolum DSM 273]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 179/440 (40%), Gaps = 12/440 (2%)

Query: 31  SIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VASIGSLSIPV 85
           +IDSR+I  P   F A++G   DGH F+    ++GA   +V+ +        +       
Sbjct: 34  AIDSRAIDGPG-IFIALRGESTDGHRFVQDVFRRGADFAMVSREWHSLEKDPVPPPGKAY 92

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D    L +LA   R      ++ I GS GKTTTKEM    L +  K +   G++NN
Sbjct: 93  IVVQDTEKGLQELASIYRDTFPIPVVGIGGSNGKTTTKEMTAAVLRTGFKVHVSRGNFNN 152

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           H+GVP+TL  M  D +  + E+G++H GE+  LT + RP   ++T I   HL     +E 
Sbjct: 153 HLGVPITLLGMRRDTEIAVVEMGINHPGEMELLTAIARPTDGLLTNIGHEHLEFLIDLEG 212

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +  A+ ++F+ L++         D     L   +       +Y  G  +           
Sbjct: 213 VRLAERKLFDWLDRCRGTIFVNADD--SRLADAATDSERHVLYGTGSPEGRICSAESVSV 270

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                       G   E V             +    V +        +KA       E 
Sbjct: 271 GHGGRVSFTLTAGAVREQVFLQFTGRHNVQNAVAAAAVGLHFGLSTAQVKAGLEGLLPES 330

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             KR      +G  T+I+++YNANP SM+ A+  L+ +     GRRIAV+GDM E+G  +
Sbjct: 331 GWKRLE-LSEEGGVTIINDTYNANPDSMRLALDTLADMP--CSGRRIAVIGDMLELGATA 387

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  +   L+   I   +  G         LP     H     D L   +Q  +  GD
Sbjct: 388 EDEHRSIGRYLAGLPIDMFFTFGALAGLGGRELPERCRGH-FTGRDELLHALQEEVRSGD 446

Query: 446 VVVVKSSNSCGFYRLINLLL 465
            V+ K S      +    L+
Sbjct: 447 AVLFKGSRGMHLEQTAGALI 466


>gi|262404719|ref|ZP_06081274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
 gi|262349751|gb|EEY98889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio sp.
           RC586]
          Length = 453

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 136/473 (28%), Positives = 213/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      ++ +S DSR I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLIG--ADRAISVVSTDSRQIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VIGGAVALLVERELDA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   + D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDDYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL       +N +    +L K    
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLRAGAVAIVNLESHGGDLWKTDLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT  +     NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 233 DKTVKTFST--TDHNADFYPRDVRLNALGVASFTLVTPIGEVDVELGIIGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR        +    TLID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIRHGLAHLAKVKGRVDLTHLRQDI---TLIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + ++   V   G     + D   
Sbjct: 348 LGGFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFSFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +        V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGRAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|226311639|ref|YP_002771533.1| UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226094587|dbj|BAH43029.1| putative UDP-N-acetylmuramoyl-tripeptide--D- alanyl-D-alanine
           ligase [Brevibacillus brevis NBRC 100599]
          Length = 460

 Score =  225 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 201/469 (42%), Gaps = 16/469 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+          +G  I   P   ++ +  D+R +     F A+ G   DGHDF+L A
Sbjct: 1   MKPIA-LDQAAINAEGILIAGSPGLALSSVHFDTRELTVGSLFVALTGGARDGHDFLLQA 59

Query: 61  VQKGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            ++GA   +V+  + +         +  V+D L    KLA A R       IAITGS+GK
Sbjct: 60  AEQGAVAALVSNQEKIPGDLPNDFGLILVNDTLRGFQKLAAAYRKSFSFPRIAITGSIGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT K+++   L+S    Y    ++NNHIGVPL+L +M  +    + ELGM+H GEI  L 
Sbjct: 120 TTVKDIVAHVLASRSPVYKTYKNFNNHIGVPLSLLQMEENHQAAVLELGMNHAGEIDLLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            LV+P I+VIT I  +H+  F   E+IA AKAE+       G + LN D  +  L+    
Sbjct: 180 SLVQPDISVITFIGESHIEYFGTREKIALAKAELLPHTALDGLVLLNKDSEYLRLIAHLY 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLM 298
                  +  +  ++ AD    + +     +  +V    G+  E      G H   N L 
Sbjct: 240 PGE----LMYYSVNEKADIWAEQIETVEGGTRFKVYLASGEYFEAFLPLHGRHSVLNALP 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I   L  D +    ALS     +    R+     +     I ++YNA+P SM+AA+ 
Sbjct: 296 AVAIAKRLGMDTEQIAYALST---VQLSAMRFEQINGKHATVYISDAYNASPVSMEAAVR 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLSGFHVLALKD 416
             +++ P      I VLGDM E+G  S++ H  +   +         +   G     L D
Sbjct: 353 TFAELYPECAR--IVVLGDMYELGPDSRAMHAGVGASIQDIAERFELLVTIGEDSRHLHD 410

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A        +  T       +     +    + K+S     + LI  L 
Sbjct: 411 AYAGKK--LHFATKAEAMAALLPLRDEKHAFLFKASKGMSLWTLITDLE 457


>gi|326564322|gb|EGE14552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 103P14B1]
 gi|326573676|gb|EGE23634.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis O35E]
 gi|326574701|gb|EGE24637.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 101P30B1]
          Length = 494

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV   G H+     A+     +  +      L   ++  L  G   V+ K S  
Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|167564203|ref|ZP_02357119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis EO147]
          Length = 468

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/471 (24%), Positives = 197/471 (41%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSR+ +  + F A+KG H+D H+F+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A +    ++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETET 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F                 + S + +      ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAGHDTPAAVTGVLDGSRLAIDTPDGRIDVQLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
            +          +    + L  F P +GR +  R    +    T+ID++YNANP SM+AA
Sbjct: 293 ASTAAALAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       +
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +             L   +       ++VK S      R++  L  E
Sbjct: 409 AYGAAARRFDDAAALLAALLAANF-GAHATLLVKGSRFMKMERVVGALANE 458


>gi|86143910|ref|ZP_01062278.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85829617|gb|EAQ48080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 447

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 126/443 (28%), Positives = 199/443 (44%), Gaps = 32/443 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GIS D+R I P   FFA+KG +++G+ F   A++ GA   V++ +              
Sbjct: 32  DGISTDTRKIEPNTLFFALKGANFNGNSFAQQALKSGASHAVIDEEEYHLKDKT----IL 87

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+DVL  L  LA A R      ++A+TGS GKTTTKE++   LS   KT A  G+ NNHI
Sbjct: 88  VEDVLQTLQDLAHAHRKYLDIPVLALTGSNGKTTTKELINSVLSKKFKTTATQGNLNNHI 147

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M  + + GI E+G +H+GEI  LT +  P    IT    AHL  F  ++ + 
Sbjct: 148 GVPLTLLSMNKNTEMGIVEMGANHIGEIADLTAIAAPDFGYITNFGKAHLEGFGSVQGVI 207

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+++ L           D   +           + + S      +  Q        
Sbjct: 208 KGKSELYDYLIAHKGTLFLNLDDPIQA----------EKLGSTHTFCFSAHQETDLNIVY 257

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +      Q   + V  + +G +   N+     I +      +   +AL  + PK  R 
Sbjct: 258 HTAQPFANFQFDEITVNSNLMGQYNTINLAAAAAIGTFFKISAEDIKEALEAYVPKNNRS 317

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +N G  T+I ++YNANP SM+AA+   + +    +G +IA LGDM E+GE S  
Sbjct: 318 ----QIINNGDQTIILDAYNANPTSMEAALRNFAGL--ERQGPKIAFLGDMFELGETSAY 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-----IQSSLV 442
            H  +A + +  +I H+ L G H          +        ++ L        +Q +L 
Sbjct: 372 EHQFIANLAAQLDIDHLILLGSHFEKT------NTTAFKFTDVNQLKEQNLPVSLQKAL- 424

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
               +++K S       L++L+ 
Sbjct: 425 ADATILIKGSRGMKLETLLDLVQ 447


>gi|254494325|ref|ZP_05107496.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268595421|ref|ZP_06129588.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268599416|ref|ZP_06133583.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268601978|ref|ZP_06136145.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268604310|ref|ZP_06138477.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268684824|ref|ZP_06151686.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043148|ref|ZP_06568871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|293398484|ref|ZP_06642662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
 gi|226513365|gb|EEH62710.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 1291]
 gi|268548810|gb|EEZ44228.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae 35/02]
 gi|268583547|gb|EEZ48223.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae MS11]
 gi|268586109|gb|EEZ50785.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID18]
 gi|268588441|gb|EEZ53117.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae PID1]
 gi|268625108|gb|EEZ57508.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012754|gb|EFE04737.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae DGI2]
 gi|291610955|gb|EFF40052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Neisseria
           gonorrhoeae F62]
          Length = 463

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|332187133|ref|ZP_08388873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
 gi|332012833|gb|EGI54898.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Sphingomonas sp. S17]
          Length = 459

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 168/466 (36%), Positives = 235/466 (50%), Gaps = 20/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT  ++  A  G + G      V+G++ DSR + P + F A+ G   DGH F+  A
Sbjct: 1   MT-LWTADEIATATGGQASGAFA---VSGVAFDSREVGPGDLFVAMLGEATDGHRFLDQA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+ D          P   V D   AL  L  A+R R++ATII +TGSVGKT
Sbjct: 57  FAQGAAGALVSADTPH-------PHVKVADSFRALEDLGRASRARTQATIIGVTGSVGKT 109

Query: 121 TTKEMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           + KE L  AL        +  + SYNNH GVPL+LARMP DV  G+FE+GM+H GE+  L
Sbjct: 110 SAKEALYAALERGWHGRVHRSVKSYNNHTGVPLSLARMPRDVRAGVFEMGMNHAGELSAL 169

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +VRPHIA++T IAPAH   F     IA AK EIF+GLE  GT  + YD    + L A 
Sbjct: 170 TAMVRPHIAIVTAIAPAHTEFFPDESAIADAKGEIFQGLEPGGTAIIPYDSPHRDRLIAA 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +     + +            +   +  +  S++  +L  + +       G H   N L 
Sbjct: 230 AKPYAARIVTFGFDPAADVHAMEAMRGPNGGSFVTARLGDRELNFTLSQPGQHWVSNALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V     D+  A  AL+      GRG R+R A       +IDESYNANPASM+A ++
Sbjct: 290 VLAAVDAAGGDLGLAGLALAELGGLAGRGARFRAANGA---LIIDESYNANPASMRATLA 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+       GR +AVLG+M E+G+ S  +H  LAE +   ++  V L G  +  L  AL
Sbjct: 347 VLA----EEPGRHVAVLGEMRELGDDSADYHAGLAEPILAAHVEKVLLVGESMAPLAAAL 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   +          + S +   DVV++K SN  G  R++  L
Sbjct: 403 EGRVDFVHVTDAKAAQAALASIIAPNDVVLIKGSNGVGLARVVAGL 448


>gi|325849555|ref|ZP_08170793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480036|gb|EGC83113.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 459

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 125/465 (26%), Positives = 192/465 (41%), Gaps = 21/465 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   + + + G      P+     + G+SIDSR+I     +  I G  +DG  FI     
Sbjct: 5   SLDQISKMLGGEI--SDPEYGHVKIKGVSIDSRTIKKDMLYIPIVGEKFDGRIFIEECQN 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+   +++ +      S++IP   VDD   AL  LA A R      IIAITGS GKTT+
Sbjct: 63  AGSPAFLIDKNFKIP-KSINIPYIIVDDTQKALRDLARAYRKELDIKIIAITGSNGKTTS 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K ++   LS   K     G+ NN IGVPLT+     D D G+ E+G    GEI  LT++ 
Sbjct: 122 KNIIHSVLSEKYKVEKTHGNLNNEIGVPLTILDFSEDTDIGVVEMGTDDFGEISVLTNIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+IT I  AHL      E IA AK EI EGL+  G    N DD   + +       
Sbjct: 182 RPDMAMITNIGDAHLLKLKTREGIAKAKLEILEGLKDDGIFLYNGDDEILKKVLPSYEIK 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   SFG     DF++   +     +        K        +G H   N  + + I
Sbjct: 242 --QKTISFGMGDKVDFKVEAKEY----TSTSTNFSYKDENYSVPLLGSHQVYNGALAVLI 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +     D     LS               + +  F ++D++Y +NP S+K  + +   
Sbjct: 296 GKLFDLSYDQIKVGLSKSS----NNANRNELIERDGFDILDDAYKSNPQSLKQGLELAGF 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
           +  +     I VLGDM E+G+   + H      +    I++    G     +  A   + 
Sbjct: 352 LDGYLNK--IVVLGDMLELGDDELNLHYKSGLDIDPKKINYCLFFGPLCKEMYRASLENF 409

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 Y E  + L   ++  +    +V VK S       +I  +
Sbjct: 410 PQDRSFYFENKNDLIDKLKLLITKSTLVFVKGSRGLHMEEVIEAI 454


>gi|268687193|ref|ZP_06154055.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627477|gb|EEZ59877.1| UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 463

 Score =  225 bits (572), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 134/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++G        VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LSAGAAAVVVSREDCAALGGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDDAVSATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI+ GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D +             ++    +   VV    G H   N 
Sbjct: 245 TATFNLNTCTFG----VDSGDVRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 301 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|269127140|ref|YP_003300510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
 gi|268312098|gb|ACY98472.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermomonospora
           curvata DSM 43183]
          Length = 475

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 195/472 (41%), Gaps = 16/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL     +     G +        V G + IDSR++ P   F A++G   DGHDF   
Sbjct: 1   MIPLA-LSQIALLSGGKATPGAEDALVTGPVVIDSRAVVPGALFVALRGERADGHDFAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           AV                +   ++P   VDD + AL +LA     R  + T++ +TGS G
Sbjct: 60  AV----AAGAAGVLAQRPLDDPALPAVIVDDAVAALGRLAGGVLARLPQVTVVGVTGSAG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L     T A  GS+NN IG PLT+ R        + E+G   +G + +L
Sbjct: 116 KTSTKDLIAQVLRRHGPTVAAEGSFNNEIGHPLTVLRADEQTRHLVLEMGARGIGHVAYL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I V+  +  AHL  F   E IA AK E+ E L   G   LN DD     + A+
Sbjct: 176 CRVAPPRIGVVLNVGSAHLGEFGDREAIARAKGELVEALPADGAAVLNADDPLVRAMAAR 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +    +      A  +    +    +    +     S  V     G H   N L 
Sbjct: 236 TAAEVLTFGRAADADVRAADETLDAR---GRPRFTLVTPRGSAPVELRLHGRHAVGNALA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +       V+   +ALS   P      R          T+++++YNANP SM+AA+ 
Sbjct: 293 AAAVALRAGMAVEAIARALSQAAPL--SRWRMEVTERPDGVTVVNDAYNANPESMRAALE 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            ++ ++    GR  A LG+M E+G  S + H  + + ++    + +   G     L D  
Sbjct: 351 AVAHMARAAGGRAFAALGEMAELGARSVAEHEKIGQHVARNGYAGLVAVGEAAAPLLDGA 410

Query: 419 PRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++          + +      +   L   DVV+VK S   G  R+   LL 
Sbjct: 411 RQAGSWTGECVQVDDVGAAVTALSERLRPRDVVLVKGSRVAGMERVAQGLLA 462


>gi|291515928|emb|CBK65138.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes shahii WAL 8301]
          Length = 417

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 192/436 (44%), Gaps = 33/436 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA++G  +DG+ F+  A++KGA   V +   VA+       +  VD
Sbjct: 14  ISTDTRRIEPDSIFFALRGDTFDGNRFVAEALEKGAAYAVSDDPQVAASDERQ-RIVLVD 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 73  DTLKALQDLARCHRRALGIPILAISGSNGKTTTKELVSRVLAERFEVYATRGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GE+  L  +  P+  ++T I  AHL  F G E +   
Sbjct: 133 PLTLLAMTRDTEFGVVEMGASACGELALLASVAEPNYGILTNIGLAHLEGFGGPEGVRRG 192

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+F+ L   G                                   D  L       + 
Sbjct: 193 KGELFDFLAANGGHAF---------------------------VPADDEILTGMAAERDS 225

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E      +  + +H  G +   N+   + +        +    A++ + P       
Sbjct: 226 LADEYYSASLADGIENHLEGSYNRFNIAAAVAVGRYFDVPDERIRHAIASYVP----DNN 281

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               +     TL+ + YNANP+SM+A++            RR+ +LGDM E+G+ S+  H
Sbjct: 282 RSQRIGTSRNTLVADCYNANPSSMRASVGNFLAEPLEERQRRVLILGDMLELGDWSEREH 341

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + E+ +    + + L G       D L     +V    T D L   ++ S V+  +V+
Sbjct: 342 AAIIEMAAQDPEAELLLVGPEFAKAYDGLAEKPANVTLCPTRDDLISLLKVSPVEHSLVL 401

Query: 449 VKSSNSCGFYRLINLL 464
           VK S+  G  + +  L
Sbjct: 402 VKGSHGMGLEQALEAL 417


>gi|167571353|ref|ZP_02364227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia oklahomensis C6786]
          Length = 468

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 117/471 (24%), Positives = 197/471 (41%), Gaps = 17/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSR+ +  + F A+KG H+D H+F+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERVSFERVSTDSRTASLGDLFVALKGEHFDAHEFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFALPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIG---SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A +    ++NN IG+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAAGADARLATAGNFNNDIGLPLTLLRLTAAHRLAVVELGMNHPGETET 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F                 + S + +      ++V  + +G H A+N L
Sbjct: 235 --VAATGNRIVDFALHGAGHDTPAAVTGALDGSRLAIDTPDGRIDVQLNALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
            +          +    + L  F P +GR +  R    +    T+ID++YNANP SM+AA
Sbjct: 293 ASTAAAFAAGVPLAAIRQGLEAFEPVKGRLQVTRATVGSLAGATVIDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  S      R+ V+G+M E+G+   +FH ++        I  ++  G       +
Sbjct: 353 IDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDSLYALGAATQPACE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +             L   +       ++VK S      R++  L  E
Sbjct: 409 AYGAAARRFDDAAALLAALLAANF-GAHATLLVKGSRFMKMERVVGALANE 458


>gi|320535365|ref|ZP_08035479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
 gi|320147767|gb|EFW39269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema phagedenis F0421]
          Length = 466

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/475 (26%), Positives = 205/475 (43%), Gaps = 32/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +F +   A+QG  +    +    + +SIDSR++     F  ++G   DGH +I  
Sbjct: 1   MKNLLSFDETSIAVQGMLLKNHTKARGFSSVSIDSRTVKDGSLFVPLRGEKQDGHRYIRS 60

Query: 60  AVQKGAGLVVVNTDMVASIGSL----------SIPVFGVDDVLGALNKLAVAARLRSKAT 109
           A++KGA L   +   ++   +           S     V + L AL   A     +    
Sbjct: 61  ALEKGAVLFFADEKFLSVDSNKIKTEKLCDEFSASCIQVKNTLAALQAAARFYLKKFPNL 120

Query: 110 I-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           I + ITGS GKTTTKE+    LS         G+ N+  G+PL++  +  + + GIFELG
Sbjct: 121 IKVGITGSSGKTTTKEIAGAVLSQKFSVVMNKGNLNSETGLPLSVFEVRDEHEVGIFELG 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           M+  GE++ +T ++ P   +IT I  AH+      + IA  K +IF   +K    F+  D
Sbjct: 181 MNRKGEMKEITSVLCPQFGIITNIGSAHIGILGSQQAIAEEKKQIFSFFDKDCMGFVP-D 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             F + L+A      +    +  K           K+   +      +  K  E+     
Sbjct: 240 CPFTDFLQAVPLGKVVCYENTTLK---------NIKKIESKGMYGSTIFYKDEEICFPLA 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N    + +   L   V    + L    P  GR +  +  ++      + + YNA
Sbjct: 291 GNHNIKNAQAVIALAEELGLSVKEIKRGLESVQPIFGRSQFMQGDVD-----CLFDCYNA 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM AA++V S+      G++ AVLG M E+G+ S + H  +    +  +I  ++L G
Sbjct: 346 NPDSMSAALAVFSETKVQ--GKKAAVLGSMLELGKESAAAHKKICAQAAASDIDFIYLFG 403

Query: 409 FHVLALKDALP-RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +      +      V Y +   MD L   +  +L  GD V++K+S      RL
Sbjct: 404 KEIGDSGKNINWNGKTVFYFDESEMDALGKALDENLHRGDFVLLKASRGLALERL 458


>gi|313901770|ref|ZP_07835196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467976|gb|EFR63464.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 475

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 186/461 (40%), Gaps = 18/461 (3%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A  G  +       V G ++DSR +     FFA+ G   DGH F+  A+  GA  
Sbjct: 6   AEVAEATGGRLVAGDGGVTVAGGAVDSRRVEAGNLFFALPGQRVDGHQFVGQALAAGARG 65

Query: 68  VVVNTDMVASI---GSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTK 123
            V+   +   +         V  V D   AL  LA    R R    ++ ITGSVGKTTTK
Sbjct: 66  AVIARPLAEVLPGGPPPGTAVVEVADTRQALASLARWVRRRRPGLRVVGITGSVGKTTTK 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L          G+YN  IG+PL L  +       + E+ M  LGEI  L  +  
Sbjct: 126 EMTAAVLEQRFAVLKTAGNYNTDIGLPLILLDLEDHHQVAVLEMAMRGLGEIARLASIAE 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T +A +HL     +E+IA AK E+ E L   G   LN  D           A  
Sbjct: 186 PDIGVVTVVAESHLEFLGSLEKIAQAKGELVEALPADGVAILNAGDPRVRA----MAART 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG    AD +    +     +   +++ G     V   +    A    +    V
Sbjct: 242 RARVLTFGVEGGADVRAVAVESRGPGTRFRLEIPGGDAATVELALPGPAAVTCALAAAAV 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++      AI A              R A +   +TL  + YNA+P S  AA+  L Q+
Sbjct: 302 GVVLGLDADAIAAGLGRARPASLRSEIRQAGS---WTLFIDCYNASPTSTAAALQALRQV 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           +  G+ R +A+LGDM E+G+ ++  H    +  +  ++  +   G    AL +   +   
Sbjct: 359 A--GDRRAVAILGDMFELGDWAEEGHRRTGQ-AAARSVDVLLAVGRWAPALVEGWRQAGG 415

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            +           L   +   L  GD +++K S       +
Sbjct: 416 AAGAAAAYPDKAALLADLDRWLHPGDAILIKGSRGMAMEEV 456


>gi|258625127|ref|ZP_05720044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
 gi|258582578|gb|EEW07410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           mimicus VM603]
          Length = 453

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   AL +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVQRELEA-----DCSQLVVADTKQALGQLGAWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL +     ++ D +  E  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVSLDSNGGEHWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFTLVTLIGEVDVELGIIGQHNVANALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR    +   +     LID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEIRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +    G   V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|148239364|ref|YP_001224751.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Synechococcus sp. WH 7803]
 gi|147847903|emb|CAK23454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 7803]
          Length = 471

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 111/468 (23%), Positives = 174/468 (37%), Gaps = 15/468 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              L++          P   ++     +  DSR++ P   F  ++G  +DGH F+  AV+
Sbjct: 5   LSQLVELWGQPLWAGGPAPDLSKALGPVCTDSRTLEPGSFFIPLRGERFDGHRFLSSAVE 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA    V +D   ++    +  + V D L A  +LA   R +  A ++A+TGS GKTTT
Sbjct: 65  RGAQAAFVASDCAHAVPD-GLLHWKVADTLEAYQQLATLHRRQLNAAVVAVTGSAGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++  AL+ +    A   + NN IGVPLTL          + E+GM   GEI  L+   
Sbjct: 124 RELIRSALAPLGDVQASDSNNNNDIGVPLTLLGAHRSHAAVVVEMGMRGAGEIERLSCCA 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT I  AH+        IASAK EI   L   G + +   D+  E   ++    
Sbjct: 184 EPEIAVITNIGTAHIGRLGSRAAIASAKCEITAALSPRGVVVIPAGDALLEDALSRCWTG 243

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I  +   G     D            S          +                  L  
Sbjct: 244 RILRVSLEG-----DEPEGGPDVSGLTSAALPAPDLVGVFQPEDQSLAFQGLRFRCPLEG 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA---NPASMKAAISV 359
                  +     A  +  P                  L     +       +   A+  
Sbjct: 299 RHNARNFMLALAVASELEVPLHSLEAMDVAMPGGRNKRLSMGGVSLLDETYNASPEAVLA 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDA 417
             ++  H  GRR AVLG M E+G  S   H  +A+      +  + +   G     ++  
Sbjct: 359 ALELLAHQPGRRFAVLGTMLELGSRSVELHRRVAQRAVDLKLDGLVVVAGGDEGDVMEAT 418

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                     +T +   L ++  L  GD V++K+S      RLI +L 
Sbjct: 419 ACSLSRFTRVQTPEDAALPLRGWLKPGDTVLLKASRGVALERLIPVLR 466


>gi|315656830|ref|ZP_07909717.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315492785|gb|EFU82389.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 483

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 128/490 (26%), Positives = 208/490 (42%), Gaps = 34/490 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T   L +AI            + G    DSR ++  + F A+ G + DGH F+  
Sbjct: 1   MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57

Query: 60  AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
             ++G  + +V+ D    +            + V  V D   AL +LA A   + +A   
Sbjct: 58  VARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117

Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  +
Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G
Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280
              LN DD   E +  ++       +  F   KN   ++   +     +    +     S
Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L    I  +           LS   P            +     
Sbjct: 294 APVQLQLLGAHHVTNALAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   
Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409

Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           IS +   G     +     AL R    H           +Q  +  GD+++VK S+  G 
Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469

Query: 458 YRLINLLLEE 467
           ++L   + E 
Sbjct: 470 WKLAQEIEER 479


>gi|304389587|ref|ZP_07371549.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327140|gb|EFL94376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 483

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 208/490 (42%), Gaps = 34/490 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T   L +AI            + G    DSR ++  + F A+ G + DGH F+  
Sbjct: 1   MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57

Query: 60  AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
             ++G  + +V+ D    +            + V  V D   AL +LA A   + +A   
Sbjct: 58  VARRGGKVAIVSHDRAEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117

Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  +
Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G
Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280
              LN DD   E +  ++       +  F   KN   ++   +     +    +     S
Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N +    I  +           LS   P            +     
Sbjct: 294 APVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   
Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409

Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           IS +   G     +     AL R    H           +Q  +  GD+++VK S+  G 
Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469

Query: 458 YRLINLLLEE 467
           ++L   + E 
Sbjct: 470 WKLAQEIEER 479


>gi|326559302|gb|EGE09729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 7169]
 gi|326569940|gb|EGE19987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC1]
          Length = 494

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 196/492 (39%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV   G H+     A+     +  +      L   ++  L  G   V+ K S  
Sbjct: 420 ALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRG 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|40713142|emb|CAE53342.1| murF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 193/466 (41%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            Q GA  V+ +          ++P   V+D   AL  LA     RLR + T++ +TGS G
Sbjct: 60  GQAGAVAVLGSRP-------TALPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A  G+ NN +GVPLT+ R      F + E+G   +G++  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AHL  F     IA  K E+  GL   GT  LN DD     +++ 
Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +    +FG +++AD ++R                  +   V   I          
Sbjct: 233 TDGPVL----TFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                ++       A  A              R        TL+++SYNA+P S +AA+ 
Sbjct: 289 AAVAAALSAGLTLDAAAAPLATASLTRWRLELRDIAGGV--TLLNDSYNASPGSTRAALD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++    GRR+AVLG M E+G+ S++ H  + E  +      V   G  V  L  A+
Sbjct: 347 A---LAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--AV 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                            +++  L  GDVV+VK+S       +   L
Sbjct: 401 GAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446


>gi|262380446|ref|ZP_06073600.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
 gi|262297892|gb|EEY85807.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter radioresistens SH164]
          Length = 468

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 207/472 (43%), Gaps = 27/472 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   L++A QG+      P+  +  I  DSR     +AF A+KG  +D H+F+   + K
Sbjct: 14  WTAQQLMEATQGYWYQERCPEQPIKRILTDSRQAEAGDAFLALKGERFDAHNFVAQVLNK 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V   +      L +    V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVERPL-----DLDMMQLVVTDTRQALGRLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELTAEHQYAVMELGASHQGEIDYTSQLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  +  AHL  F G E I  AK+EI+  + K GT  +   D F + ++   HA+
Sbjct: 189 QPQVAGIINVGTAHLGEFGGREGICRAKSEIYAHIAKDGTSVIPAADDFTDAIR---HAV 245

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + SFG+    D    +    ++ +   +       EV     G H  QN       
Sbjct: 246 QTTQVLSFGE--GGDIYATEMTLLAQSAQFMLHTPQGVREVNLPFAGLHNVQNATAATAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L +    +GR       ++      ID++YNANP SM+AA  VL+ 
Sbjct: 304 ALAIGISLDDIVIGLELAQGAKGRLNF----ISHKQHLFIDDTYNANPTSMRAAGEVLA- 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
                 G ++ V GD+ E+G+ +   H  L   L   +I+ +   G    A  +      
Sbjct: 359 ---QQSGIKVMVTGDIGELGDAAAVEHYRLGRDLVSQDINFLIAVGEFAPAALEGARSTQ 415

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
               +    T      F+ S +          + K S       L+  L+E+
Sbjct: 416 YGKKMQAFLTQAQALPFLMSLVETHQPQSMSFLFKGSRYTHMETLMADLMEK 467


>gi|311745654|ref|ZP_07719439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
 gi|126575090|gb|EAZ79440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Algoriphagus sp. PR1]
          Length = 431

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 124/438 (28%), Positives = 197/438 (44%), Gaps = 21/438 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+S D+R I     FFA+KGP++D ++F   A+++GA LVV++              F 
Sbjct: 14  TGVSTDTRKIGKGNVFFALKGPNFDANEFAPKALEQGASLVVIDDP--KYFIEDDERYFL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             D L  L  LA   R +    II +TGS GKTT+KE+L   L +  KT A +G+ NNHI
Sbjct: 72  AKDALKMLQDLANYHRKQLTIPIIGLTGSNGKTTSKELLHAVLQTKFKTVATVGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +P D +  I E+G +  G+I  L  +  P    IT I  AHL    G   + 
Sbjct: 132 GVPLTLLSIPEDAEMAIVEMGANKQGDIEELCEIAEPTHGFITNIGRAHLEGMGGPAGVL 191

Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             K E+F+      GT+F+N  D     +  +     +                   K  
Sbjct: 192 KTKTELFQFLRANKGTVFINSQDPVLSNMAKRFDKPVLYPAKGDFCEVGFVEANPFVKFT 251

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            E +                 IG +   N+   L +      ++  AI+A+  + P   R
Sbjct: 252 VEGTEEVYL---------SSLIGAYNFGNIANALAVGKYFEVEMKGAIEAIVNYQPSNMR 302

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +      N     +I ++YNANP+SM+ AI    +++  G+  ++ +LGDM E+GE ++
Sbjct: 303 SQLLEKRSN----LIILDAYNANPSSMEVAIRTFGEMT--GKKHKMIILGDMFELGEHAE 356

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  L E++S Y I  V  +G     +  AL R     Y         ++Q S ++  +
Sbjct: 357 EEHAKLGEIISEYEIEKVCFTGKL---IVSALARYPKALYFPDPFSFRNWLQDSQLEDYL 413

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S       L++ +
Sbjct: 414 ILIKGSRGMKLEGLVDFI 431


>gi|45580841|emb|CAG15001.1| MurF-like protein [Actinoplanes teichomyceticus]
          Length = 447

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 193/466 (41%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +   +   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLEAIAAVVGGTVEGDHTVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            Q GA  V+ +          ++P   V+D   AL  LA     RLR + T++ +TGS G
Sbjct: 60  GQAGAVAVLGSRP-------TALPTVVVEDARTALQALAADVVARLRERLTLVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A  G+ NN +GVPLT+ R      F + E+G   +G++  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATKGNLNNELGVPLTMLRAGAATRFLVVEMGARRIGDLAKL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AHL  F     IA  K E+  GL   GT  LN DD     +++ 
Sbjct: 173 TDLVPLDVAVVLNVGEAHLGVFGSRAAIAEGKGELVRGLVPGGTAILNADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +    +FG +++AD ++R                  +   V   I          
Sbjct: 233 TDGPVL----TFGHAEDADVRVRDLTLDRLGRPSFTLRTADATARVKLPIVGAHQALNAA 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                ++       A  A              R        TL+++SYNA+P S +AA+ 
Sbjct: 289 AAVAAALSAGLTLDAAAATLATASLTRWRLELRDIAGGV--TLLNDSYNASPGSTRAALD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++    GRR+AVLG M E+G+ S++ H  + E  +      V   G  V  L  A+
Sbjct: 347 A---LAAIEGGRRVAVLGQMLELGDESEAEHRAVGEYAAAR-ADVVVTVGEAVRPL--AV 400

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                            +++  L  GDVV+VK+S       +   L
Sbjct: 401 GAGERAVAVADNGAAVDWLRGHLAPGDVVLVKASRGARLDEVAAAL 446


>gi|315604427|ref|ZP_07879493.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314133|gb|EFU62184.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 465

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 209/468 (44%), Gaps = 16/468 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   +  A+ G  +G  P   V G +  DSR  +    + A +G + DGH F+  A+++G
Sbjct: 4   SAQWIADAVSGRLVG--PDACVTGTVVTDSREASAGSLYVARRGENADGHAFVHGAIERG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSVGKT 120
           A  V+   ++  +     +    V+D   AL  LA A     R R    +IA+TGSVGKT
Sbjct: 62  AVAVIAERELEEA-----VAQIIVEDSTRALGDLARAHVDALRSRGTLDVIAMTGSVGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   LS    T A   S+NN +G+PLT  +        + E+G S  G I +LT 
Sbjct: 117 TTKDLLLQILSEDGPTVAPKLSFNNEVGLPLTALQADETTRHLVLEMGASGPGHISYLTD 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P +A+   +  AH+  F G E +A+AKAE+  G    G + LN DD   E +     
Sbjct: 177 IVSPDVAIELCVGHAHVGGFGGFEGVAAAKAELIAGTRPGGPVILNTDDPNVEAMAP-MA 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    + G+ +            ++++   +     S  V    +G H   N L   
Sbjct: 236 TGPIVRFSALGEPRADVRAEEVRTDRADRASFTLVTPRGSAPVSLALVGRHHVSNALAAA 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISV 359
                L  D+DT    LS            +   +     TLID+SYNAN  SM+A I+ 
Sbjct: 296 AGALTLGMDLDTVAAVLSGARALSPHRMDVHDLDIEGTALTLIDDSYNANLDSMRAGIAA 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ I    +  RIAVLG+M E+GE S+S H  +  +++   +  +   G H     +   
Sbjct: 356 LASI--GRDAVRIAVLGEMLELGEESRSLHEQVGALVADAGVDTLIGLGAHSHYYLEGAS 413

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +   +         +     +G VV+VK S     +++ ++L E+
Sbjct: 414 GVANRTVASDPSDAARLVARFAEEGAVVLVKGSYGSQSWQVADILREK 461


>gi|294628853|ref|ZP_06707413.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
 gi|292832186|gb|EFF90535.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. e14]
          Length = 471

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 122/467 (26%), Positives = 186/467 (39%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++   + G +  I  P   V G +  DSR   P   F A  G   DGHDF  
Sbjct: 1   MIAL-SLAEIAAVVGGQTHDIPDPSVQVTGPVVRDSREAVPGSLFVAFVGERVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                   +V      V +   + +P   V+DV  AL  LA     R  AT++A+TGS G
Sbjct: 60  -------AVVAAGAVAVLASRPVGVPAIVVEDVQAALGALARHVVNRLGATLVALTGSAG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK+++   L +   T    GS NN IG+PLT      D  F + E+G   +G IR+L
Sbjct: 113 KTSTKDLIAQVLQTKAPTVFTPGSLNNEIGLPLTALSATEDTRFLVLEMGARGIGHIRYL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T L  P + V+  +  AH+  F G E+IA AK E+ E L            +  + L   
Sbjct: 173 TELTPPKVGVVLNVGSAHIGEFGGREQIAQAKGELVESLPAAEDG-GAAILNADDPLVRA 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +     +  FG+S  AD +    +          +L   S         Y        
Sbjct: 232 MASRTKAKVILFGESDEADVRAENVRLTDSGQ-PSFRLHTPSGASDVTMRLYGEHHVSNA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      +     A ++         R          T+++++YNANP SM+AA+ 
Sbjct: 291 LAAAAVAHELGMSATEIATALSEAGSLSRWRMEVTERPDGVTVVNDAYNANPESMRAALR 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLAL--- 414
            L  +      R  AVLG M E+G+ + + H  +  +    N+S +    G     L   
Sbjct: 351 ALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKLVAVGGREASWLQLG 408

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +         +          ++S L  GDVV+VK+S S G   +
Sbjct: 409 AYNEGSWGEESVHVSDAQAAIDLLRSELRPGDVVLVKASRSVGLEGV 455


>gi|150009948|ref|YP_001304691.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|149938372|gb|ABR45069.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Parabacteroides distasonis ATCC 8503]
          Length = 427

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 116/447 (25%), Positives = 198/447 (44%), Gaps = 33/447 (7%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F 
Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257
             E +   K E+++ + ++        ++ +         +         ++ G+  + D
Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L              + QGK   V  H IG +   N+L  + +        +   +A+
Sbjct: 244 PFL----------VFNWKQQGKLHTVETHIIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +LGD
Sbjct: 294 AAYEPTNNRSQFKKTDNNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H ++   +       V+L G H   +              T + +   +
Sbjct: 347 MRELGPTSDELHAEVVAQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMVEEL 400

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + G  +++K S+S G  +L ++L
Sbjct: 401 RKQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|307824827|ref|ZP_07655050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
 gi|307734185|gb|EFO05039.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Methylobacter tundripaludum SV96]
          Length = 519

 Score =  224 bits (570), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 127/530 (23%), Positives = 218/530 (41%), Gaps = 75/530 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD-------- 52
           MN +    ++   +QG  +G      ++ +SID+R+I P + + AIKG ++D        
Sbjct: 1   MNMM--LSEIAACVQGKLVG--EDVAISSVSIDTRAIKPGQLYVAIKGHNFDGNEFVAEA 56

Query: 53  ---------------------GHD-------FILH------AVQ---------------- 62
                                GHD       F         A+                 
Sbjct: 57  EQAGAVAAIVHQGITATAIDGGHDCSRQSSAFPPSMEVRSVAISTTAWKQDDCKDAGGRA 116

Query: 63  -KGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +GA   V      +   +   +IP   VDD   AL +LA   R ++  +++ ITGS GK
Sbjct: 117 TQGAVAEVEQRMEQLPRELMRPTIPHIVVDDTRLALAELAGVWRKKAAVSVVGITGSNGK 176

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEM+   LS    T    G+ NN IGVPLTL R+     + + E+G +H GEI + +
Sbjct: 177 TTVKEMVAAILSVNADTLFTQGNLNNDIGVPLTLLRLNEQHRYAVIEMGANHPGEIEYTS 236

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +  +A+IT +  AH+  F  I+ +A AK EI + L++ G   LN DD++F+  K+  
Sbjct: 237 QYAQADVAIITNVGAAHIEGFGSIDGVAKAKGEIIQTLKQDGVAVLNRDDAYFDYWKSI- 295

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY-HMAQNMLM 298
              G + + SFG  + AD      K            +  + +             N++ 
Sbjct: 296 --AGTRKVISFGIDERADVTAHSVKTEIINHAFATTFELVTAKGELTVKLKLAGRHNVVN 353

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L   +   A      +        +    R +  +++    +ID++YNAN AS+KA + 
Sbjct: 354 ALAAATACLALDTDLQQIKQGLESVKPVTGRLQPLVSRLGNIVIDDTYNANSASLKAGLD 413

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           VL+    + +G+R  VLG   E+G  S   H  + E++    +  +   G          
Sbjct: 414 VLA----NCDGKRWLVLGAFGELGPDSPKIHEQMGELIKSSGVVRLLAVGSDAGNTVKIF 469

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                  + +T + L   ++  L   + +++K S +     ++  L+E F
Sbjct: 470 GEG--ATFFDTQNDLIEMLKQELKGDEAILIKGSRAQRMENVVAALVENF 517


>gi|296113986|ref|YP_003627924.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
 gi|295921680|gb|ADG62031.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis RH4]
          Length = 494

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 134/492 (27%), Positives = 195/492 (39%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV   G H+     A+     +  +      L   +   L  G   V+ K S  
Sbjct: 420 ALLEIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLCQLLSHGSATVLFKGSRG 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|50086342|ref|YP_047852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
 gi|49532318|emb|CAG70030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter sp.
           ADP1]
          Length = 468

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 132/474 (27%), Positives = 203/474 (42%), Gaps = 27/474 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             W    L QA QG+      P+G +  I  DSR     +AF A+KG  +D HDF+   V
Sbjct: 12  APWDASQLQQATQGYWHNNRQPEGTIKRILTDSRHAEAGDAFLALKGERFDAHDFVAQVV 71

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKT 120
           Q+G  + +V   +      + I    V D   AL  L    R +  K  +IA+TGS GKT
Sbjct: 72  QQGCQVAIVEQPL-----DVDIFQLIVSDTRLALGALGAYRRQQYPKLQVIALTGSSGKT 126

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + 
Sbjct: 127 TTKEMLGSILSRLAPTLVTRGNLNNDLGVPMMLLELRPEHQYAVMELGASHQGEIDYTSK 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+PH+A I  I  AHL  F G + I  AK+EI++ +   GT  L  DD F + +K    
Sbjct: 187 LVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYQHIAVDGTAILPADDDFTDQIKQAIQ 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +    G+              ++ S  ++        +     G H  QN L   
Sbjct: 247 TQKMLSFGQDGE-----IYATSVVLHAQSSEFDLHTPQGQAHLSLPFAGEHNVQNALAAT 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +  D++  ++ LS     +GR    +     G    ID++YNANP SM       
Sbjct: 302 AFALAIGIDLNNIVQGLSAAQGAKGRLNFIQ----HGHHLFIDDTYNANPGSM----RAA 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +     G ++ V GD+ E+G+ S   H  L   L+   + ++   G    A++     
Sbjct: 354 AGVLAQQTGIKVMVTGDIGELGDASMLEHTQLGHDLANEQLDYIVAVGEFAGAMQQGAAS 413

Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
           S H   +    T      F+   +          + K S       L+  L+E+
Sbjct: 414 SDHPEKLKAFTTQAQALPFLIELIQQHQPQSMSFLFKGSRYTHMETLMADLMEK 467


>gi|227503276|ref|ZP_03933325.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075779|gb|EEI13742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 509

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 131/514 (25%), Positives = 207/514 (40%), Gaps = 58/514 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+     G       P   V G +  DSR +     F A+ G   DGHDF  
Sbjct: 1   MIPL-SIGDIAAITGGSLDSVDDPDERVTGFVEFDSRKVTSGSLFVALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94
            A+++GA  V+           + +P   V                          V+GA
Sbjct: 60  KAIEQGAVAVLAARP-------VGVPAIIVKPQGRVTGDAANADIYANDEDGSAAAVIGA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ LA     R        I+ +TGS GKT+TK++L     +  +T A  GS+NN +G+P
Sbjct: 113 LSNLAREVTSRLAAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGETVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R      F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTEITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232

Query: 211 AEIFEGLE---KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            E+ E L      G   LN DD F   +  ++ A  +    +  ++ +A +     +   
Sbjct: 233 GELIEALPAAADGGVAVLNADDPFVASMAPRTQAKVVYYSANRPQAADAQYYATDIELDD 292

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                          +      +   Q         + + + V+  + A ++   +    
Sbjct: 293 VARPSFTFHAPGVEPMSIKLQVFGKHQVSNALAAAAAAIESGVEPTVAARALSGHQTSSA 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
            R      +   T+ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + 
Sbjct: 353 HRMDVRTRRDGVTVIDDSYNANPDSMHAAIAALAYTSAARPDARSIAVLGEMGELGGEAV 412

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLV- 442
             H  L  VLS Y+++H+   G      A+ +A     I       ++     +++ L  
Sbjct: 413 EAHRILGSVLSKYHVNHLVAVGEGAHTVAMVEAAHAHGIQTELCPDIEAATAAVENILRV 472

Query: 443 ------------DGDVVVVKSSNSCGFYRLINLL 464
                         DVV+VKSSN+   +R+   L
Sbjct: 473 APAGVEDWSARAAKDVVLVKSSNAQRLWRVAEQL 506


>gi|85707762|ref|ZP_01038828.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
 gi|85689296|gb|EAQ29299.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter sp. NAP1]
          Length = 486

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 172/476 (36%), Positives = 239/476 (50%), Gaps = 26/476 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW    +  A  G +         +G+ +DSR + P + F A+KG   DGH FI  A  
Sbjct: 22  ALWDAQSIASATGGTASHAFQA---SGVEMDSRDVRPGDVFVALKGEAMDGHKFIAAAFA 78

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   + +         +  P   V D   AL+ LA AAR R  A  IA+TGSVGKT  
Sbjct: 79  KGAVAAITDRP-------VDFPHVLVKDTTKALHDLAHAARERGFAKRIAVTGSVGKTGV 131

Query: 123 KEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  +L    +   +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GEI  L+ 
Sbjct: 132 KEAIFASLDRASRGAAHRSVRSYNNHVGVPLSLARMPARAKFGVFEMGMNHAGEIAPLSD 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRPH+A+ITTIAPAH+ N   +E IA  KA+IF GL   GT  +  D  +   +   + 
Sbjct: 192 HVRPHVALITTIAPAHIENLGSMEAIADEKAQIFTGLVTGGTAIIPADSEYAGRMIGHAK 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           ALG+  + +FG+S++AD +L       +  S +   L    +       G H   N L  
Sbjct: 252 ALGV-NVVTFGRSEHADVRLLDAIPSATGGSMVTADLGDARLCYTIAEPGEHWIANSLGV 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  V     D+ +A  AL+     +GRG R+      G   L+DESYNANPASM+A +  
Sbjct: 311 IAAVRAAGGDLASAGLALAEMGGLKGRGARFDIPAAGGKALLVDESYNANPASMRATLRA 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q   H    R+AVLG M E+G+ +  FH  +AE L+   I HV L G  + AL   L 
Sbjct: 371 LGQTPAHR---RVAVLGSMKELGDFAPRFHAQIAEPLTEAKIDHVILVGDEMRALAGELG 427

Query: 420 R--------SIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLE 466
           R        +      ++       ++   L  GD V+VK SNS G  RL+    +
Sbjct: 428 RMPANSLGFAPSFAQCDSPAEAIAALEEYGLTHGDAVLVKGSNSVGLGRLVQHFTK 483


>gi|156973217|ref|YP_001444124.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Vibrio
           harveyi ATCC BAA-1116]
 gi|156524811|gb|ABU69897.1| hypothetical protein VIBHAR_00898 [Vibrio harveyi ATCC BAA-1116]
          Length = 454

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 126/472 (26%), Positives = 202/472 (42%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +     G  +G      +  +S D+RSI     F A+ G  +D HDF   A
Sbjct: 1   MITV-TLSQIADITGGERVGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHDFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GAG ++V   +  ++  + +      D   AL ++A       +   +AITGS GKT
Sbjct: 58  VESGAGALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +          
Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKWDEVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T      + +ADF        +            + + +   +G     N+   +
Sbjct: 233 DKNVIT--FSQSNADADFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I      T  +  S          R           LID+SYNA+  +MKAA+ +L
Sbjct: 291 AASIIALKMGATLEEIRSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 AAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|315655249|ref|ZP_07908150.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
 gi|315490504|gb|EFU80128.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 51333]
          Length = 483

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 208/490 (42%), Gaps = 34/490 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T   L +AI            + G    DSR ++  + F A+ G + DGH F+  
Sbjct: 1   MIDM-TLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGS 57

Query: 60  AVQKGAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
             ++G  + +V+ D    +            + V  V D   AL +LA A   + +A   
Sbjct: 58  VARRGGKVAIVSHDRTEILNQGWATADELDQLTVLQVSDPQYALGRLARAHLRQLRAQAR 117

Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  +
Sbjct: 118 GGTGKLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G
Sbjct: 178 YLVLEMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKS 280
              LN DD   E +  ++       +  F   KN   ++   +     +    +     S
Sbjct: 238 MAILNADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGS 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N +    I  +           LS   P            +     
Sbjct: 294 APVQLQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD-- 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   
Sbjct: 352 LIDDAYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLG 409

Query: 401 ISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           IS +   G     +     AL R    H           +Q  +  GD+++VK S+  G 
Sbjct: 410 ISVLLTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGL 469

Query: 458 YRLINLLLEE 467
           ++L   + E 
Sbjct: 470 WKLAQEIEER 479


>gi|86134152|ref|ZP_01052734.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
 gi|85821015|gb|EAQ42162.1| UDP-N-acetylmuramyl pentapeptide synthase [Polaribacter sp. MED152]
          Length = 418

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 206/436 (47%), Gaps = 33/436 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I     FFA+KG +++G+ F   A++ GA   +V+ ++  +  +    +  V 
Sbjct: 16  VNTDTRNIRKNTIFFALKGDNFNGNSFAEEALKLGANYAIVDEEVYQTQDA----IILVP 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R + KATII +TGS GKTTTKE++   LS   KT A  G+ NNHIGV
Sbjct: 72  NVLETLQQLANYHRKQLKATIIGLTGSNGKTTTKELIFAVLSKKYKTIATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  MP+D + GI E+G +H  EI FL+ +  P    IT    AHL  F G+E +   
Sbjct: 132 PLTLLSMPIDTEMGIVEMGANHQKEIEFLSSICEPDFGYITNFGKAHLEGFGGVEGVIKG 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E++  LE+   I     D   ++ K K+                            ++
Sbjct: 192 KSELYHFLEQNNKIAFINPDDKIQVDKTKNITTIPFL----------------PSIALKE 235

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   VQL   ++ +  + IG +   N+ + + I +      D   +A+  +     R   
Sbjct: 236 ANPFVQLSYDNLVINSNLIGTYNYTNIAIAITIGNYFKVKDDVIKEAIEGYESTNNRS-- 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               +NQ    +I ++YNANP+SMK A+     +       +I +LGDM E+G+     H
Sbjct: 294 --QIINQNSNVIILDAYNANPSSMKVALENFHALKAD---HKIVILGDMFELGDARLEEH 348

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + +  N +  +  G H    K+      + +  +T D      ++++     +++
Sbjct: 349 QQIVNMATQMNFNGYYFVGEHFYQTKE------NENLFKTFDDFKNDFENNIPSNSSILI 402

Query: 450 KSSNSCGFYRLINLLL 465
           K S      R++ LL 
Sbjct: 403 KGSRGMRLERVVELLK 418


>gi|326572876|gb|EGE22861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis CO72]
          Length = 494

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 133/489 (27%), Positives = 197/489 (40%), Gaps = 39/489 (7%)

Query: 8   HDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +L QA QG        + + + I  D+R I   + F AIKG  +D HDFI +A Q+GA 
Sbjct: 12  DNLKQATQGQWHHSDKAEIYAHRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQGAS 71

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTTKEM 125
             +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTTKEM
Sbjct: 72  AAIVER-----VVDCDMPQLLVADTKLALGDLGRFRREAHPDLTVIALTGSSGKTTTKEM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +VRP 
Sbjct: 127 IGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMVRPD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK------- 238
           +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +       
Sbjct: 187 VALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASKFTNL 246

Query: 239 -------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                                A+      S        F        +  ++        
Sbjct: 247 YLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTNIDI 306

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                       + ++ +      +  T  +   ++ ++    +    K     L    +
Sbjct: 307 DQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLPMDGY 366

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L+L 
Sbjct: 367 CIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQLALL 422

Query: 400 NISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGF 457
            I HV   G H+     A+     +  +      L   ++  L  G   V+ K S     
Sbjct: 423 EIDHVLTLGNHMAHTAAAINEQKPIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRGMAM 482

Query: 458 YRLINLLLE 466
             LI +L  
Sbjct: 483 ESLIAVLTA 491


>gi|108762254|ref|YP_633747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
 gi|108466134|gb|ABF91319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Myxococcus xanthus DK 1622]
          Length = 466

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 207/465 (44%), Gaps = 10/465 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  +++QA      G         +  D+R++ P   F A+ G  +D H F+  A
Sbjct: 1   MAASFSDEEVVQATGATRRGGPAPAAYATVCTDTRALTPGCLFVALVGERFDAHAFVDAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   VV            + ++ VDD L AL  L    R R +  + A+ GS GKT
Sbjct: 61  AKGGAAGAVVARGRPLPALPDGLTLYEVDDTLRALGALGRHHRQRFRIPVCAVGGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN IGVPLTL R+       + E+GM+  GEI  L  
Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEIGVPLTLFRLEPRHVAAVIEVGMNQPGEIERLAR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P   VIT + P HL     IE +A+A+ E+F+ +    TI +N D    + L     
Sbjct: 181 VVQPDAGVITVVQPEHLEGLGSIEGVAAAEGELFQEMGHGTTIVVNVD----DALIPAQA 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   +FG++++AD +L   K    E     V+  G+   V  H +G H AQN    
Sbjct: 237 ERSGAQRLTFGRAEHADVRLADVKTLGREGMVATVRHLGREWPVRLHFVGPHNAQNATAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++ L    P   R         Q   T+ID+ YNANPASM AA+  
Sbjct: 297 FAVALALGYTPEECVRGLESARPYSRRLN---VVDGQHGVTVIDDCYNANPASMDAALET 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  + P   GR + VLGDM E+G      H  L   +  +     +  G   L   +A  
Sbjct: 354 LGTLVPAS-GRAVVVLGDMLELGPGELEEHARLGGQIPSHAALAAF-FGPRSLKGWEAAS 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +   ++ L  ++   L +GDVV+VK S      R++  L
Sbjct: 412 MGESAAHFTDVEPLMAWLAPRLREGDVVLVKGSRGMRLERVVAAL 456


>gi|239907967|ref|YP_002954708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797833|dbj|BAH76822.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Desulfovibrio magneticus RS-1]
          Length = 466

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 195/464 (42%), Gaps = 14/464 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++L A      +G      +  + IDSR+++P   F  I G   DGH+F + AV K
Sbjct: 3   LTLSEILAATGAVGDVGERGNPDIEAVRIDSRAVSPGSLFVCIPGERLDGHNFAVEAVSK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +  +         PV  V D + AL KLA A R R++A ++A++GS GKTT K
Sbjct: 63  GAAAVLADRPLAG--LPEGTPVLLVRDTVAALGKLAKAWRERAQARLVAVSGSAGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    L+ +  T     ++NN IG+PL++          + ELG+S  GE+  L  +  
Sbjct: 121 ELTAAILAKVGPTAKNFKNFNNKIGLPLSMLEAGETDRLWVMELGISAPGEMAPLAAIAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVI  + PAHL     +  +A+ K+ +F                + EL  A      
Sbjct: 181 PDVAVIHNVGPAHLEALIDVAGVAAEKSRLFA--ALRPGGVALASMDYPELWAAAKAVRP 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S                   +    ++L G  +EVV    G H A+N+L      
Sbjct: 239 DVRGMSVKGGSAPYRAKYLGALSEGRGRFFLRLDGLELEVVTPLTGGHFAENILAAAASA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L A  +     L      E R    R     G +TLID++YNANP S     ++ +  
Sbjct: 299 RLLGATEEQIATGLESAVMPEQRFFCRR----HGCYTLIDDTYNANPLS--MRRAIATAA 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   + VLG+M EMG  ++  H  L E  +      V+  G H  A+ + L R  +
Sbjct: 353 EAAQGKPLVLVLGEMREMGAQAEDEHHKLGEEAAASGAKAVFYHGGHAQAVGEGLARKGY 412

Query: 424 V---HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +T +     + S+ + G V + K S S      +  L
Sbjct: 413 AGLFAVVDTPEMFTQTVASAGLRGGVYLFKGSRSMRMEEYLAAL 456


>gi|326568239|gb|EGE18321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis BC8]
          Length = 496

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 137/495 (27%), Positives = 200/495 (40%), Gaps = 43/495 (8%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QA QG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQATQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPMMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  ++   
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 243 GIKTIYSFGKS--------------------------KNADFQLRKWKQCSEQSWMEVQL 276
             K   SFG+                              D      +  +  S   +  
Sbjct: 244 -TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNT 302

Query: 277 Q---GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                             + ++ +      +  T  +   ++ ++    +    K     
Sbjct: 303 NIDIDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMR 362

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L+   + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L 
Sbjct: 363 LSMDGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLG 418

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKS 451
             L+L  I HV   G H+     A+     +  +      L   ++  L  G   V+ K 
Sbjct: 419 HQLALLEIDHVLTLGNHMAHTAAAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKG 478

Query: 452 SNSCGFYRLINLLLE 466
           S       LI  L  
Sbjct: 479 SRGMAMESLIADLTA 493


>gi|300726265|ref|ZP_07059718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
 gi|299776462|gb|EFI73019.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bryantii B14]
          Length = 434

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 195/436 (44%), Gaps = 18/436 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A++KG    +++    A  G         D
Sbjct: 16  VTTDSRDCPQDSIFIALKGESFDGNKFAASALEKGCSYAIIDEKEYAVEGDS--RYILTD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L    +LA   R +    +I ITG+ GKTTTKE+++  LS         G++NN IGV
Sbjct: 74  NTLTTFKELAREHRRQFDIPVIGITGTNGKTTTKELVSAVLSEKYNVMHTEGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLNKEHEIAVVEMGASHPGDIDVLVKYVEPTCGMITNVGRAHLLGFGSFEGVKKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSE 268
           K E+++ L +   +     +     L        I  + ++G+ ++A+ Q          
Sbjct: 194 KGELYDFLAENDALVF--LNESNPHLVKMVQQRNINRVITYGQDEDANIQGEVLSCAPFL 251

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +     + + +  EV    IG +   NML  + I      D      AL  + P   R +
Sbjct: 252 KFNWRKEGEPQLYEVQTQLIGAYNIDNMLAAITIGLHFGVDPVQINHALENYCPSNNRSQ 311

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 N+    LI ++YNANP+SM AA+     ++   +   +A+LGDM E+G +S + 
Sbjct: 312 LTVTENNK----LIVDAYNANPSSMAAALENFKVMAVSPK---MAILGDMRELGNVSDAE 364

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +A++L   NI  VWL G            + +      +D +   I+   + G  ++
Sbjct: 365 HQKIADMLKECNIDKVWLVGEEFEKT------NCNFTKFHNVDEVKEAIRQENLSGYYIL 418

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN    ++L  LL
Sbjct: 419 IKGSNGIKLFQLPELL 434


>gi|183221139|ref|YP_001839135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911230|ref|YP_001962785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775906|gb|ABZ94207.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779561|gb|ABZ97859.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase
           D-alanyl-D-alanine-adding enzyme;
           D-alanyl-D-alanine-adding enzyme) [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 459

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 123/473 (26%), Positives = 200/473 (42%), Gaps = 26/473 (5%)

Query: 1   MNPLW--TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M   +  +   +L       +   P       IS  S+ I     F  ++G   DGH++I
Sbjct: 1   MIAPFEYSLSTILSLFSLKPVWENPMNPKFFWISTSSKEIQKNTLFVPLRGER-DGHEYI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             A++ GA   +   +                 V D L AL  LA   R R    +IAIT
Sbjct: 60  ADALKAGATGFLCEKNHPILKNLSNEDQKKAIFVKDTLIALGTLANFHRNRFCPIVIAIT 119

Query: 115 GSVGKTTTKEMLT--IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKT+TK++L    +    K       +YNN IGVP TL R+       I E+GM+H 
Sbjct: 120 GSSGKTSTKDLLGGLFSFLGSKSLVVTEKNYNNEIGVPFTLFRITERTQVVICEMGMNHR 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L+ +  P  A+IT I  AH+ N    E IA  K +I  GL   G +F+  D  F 
Sbjct: 180 GEINRLSKMAEPTHALITNIGSAHIENLKSRENIAEEKIDIINGLRPNGVLFVPDDLDFL 239

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
              K ++    +            + ++ K  +  E     VQ  G  +E     I +++
Sbjct: 240 GRAKQRTKKSNV------------NLKIWKHSKNPELKVNIVQKNGFLLEWRMEKIQWNI 287

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             + L++     I   +             +  +    R  + +GF+T+ID+SYNANP S
Sbjct: 288 PGSKLLSNVRGMIAVGNFFQIPDVEMKKTIRTYKSPNKRLNIKKGFYTIIDDSYNANPES 347

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M ++I    Q + +     + VLG M E+G+ S+ +H ++ + L  Y    +   G   L
Sbjct: 348 MLSSIDASIQYAQNKP--IVWVLGTMKELGKFSKFYHEEIGKNLKKYPKGTLLGFGDDTL 405

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   +       + ++   L  FI+  +    V++VK S S     +++ L+
Sbjct: 406 PMVKQVSNGK---HFQSKVDLVEFIKKEIPKQAVILVKGSRSMKMEEIVSELV 455


>gi|262170648|ref|ZP_06038326.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
 gi|261891724|gb|EEY37710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           mimicus MB-451]
          Length = 453

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 135/473 (28%), Positives = 214/473 (45%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    +G      ++ +S DSR+I  +  F A+ G  +D HDF   A
Sbjct: 1   MIRVM-LSQLCSVLNARLVG--ADRAISAVSTDSRNIPAEALFVALVGERFDAHDFASQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V  ++ A           V D   A+ +L      + +   +AITGS GKT
Sbjct: 58  VTGGAVALLVQRELEA-----DCSQLVVADTKQAIGQLGAWVHAQCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS   +     G++NN IGVPLTL R   +  + + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILSQKGQVLYTQGNFNNDIGVPLTLLRSTAEDGYAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL +     +N D +  E  KA   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLREGAVAIVNLDSNGGEHWKAVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +KT        NADF  R  +  +   +   +      ++V    IG H   N L  
Sbjct: 233 DKTVKT--FSATDHNADFYPRDVRLNALGVASFILVTPIGEVDVELGIIGQHNVGNALAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   + A +      L+     +GR    +   +     LID+SYNA+  +MKAA+ +
Sbjct: 291 AALSLEMGASLAEVRHGLAHLSKVKGRVDLTQLREDIK---LIDDSYNASVPAMKAAVDL 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L   S      R  +LG+M E+G+ S + H  + E  + +    V   G     + D   
Sbjct: 348 LGSFSA----VRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL-- 401

Query: 420 RSIHVHYSETMDGLFLFIQSSL--VDGD--VVVVKSSNSCGFYRLINLLLEEF 468
                H+  T   +  FI+  +    G   V++VK +NS G  ++   L E+F
Sbjct: 402 --CQGHHFATHQDMMTFIEQHIEQQQGHAQVLLVKGANSAGMSKIAAALKEKF 452


>gi|213965235|ref|ZP_03393432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
 gi|213952087|gb|EEB63472.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium amycolatum SK46]
          Length = 508

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 193/498 (38%), Gaps = 34/498 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++   + G  + +     V      DSR I     F A+ G   DGHDFI  
Sbjct: 1   MIAL-TAAEIAHIVGGELVHVDDDATVTQPAEFDSRKIREGSLFLALPGARVDGHDFIDQ 59

Query: 60  AV-----------QKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAA- 102
           AV             G   VVV    +    S +       D     VL AL KLA    
Sbjct: 60  AVAAGATMALAARDVGQPAVVV--KPLGKQDSNADAFAHDPDGSGAAVLEALGKLARYVV 117

Query: 103 --RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               + +  ++ +TGS GKT+TK+M+   L +   T A  GS+NN IG P T+ +   + 
Sbjct: 118 DELKKDQLHVVGVTGSAGKTSTKDMMATLLRTDGPTVAPKGSFNNEIGHPYTVLQCTPET 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGL 217
            + + E+    +G +  L  +  P I  +  +  AHL  F   E IA AK E+       
Sbjct: 178 KYLVAEMSARGIGHVAHLARIAPPTIGAVLNVGTAHLGEFGSREVIAQAKGELVEALPAA 237

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           E+ G   LN DD +   +  ++ A  +      S  +   AD++    +           
Sbjct: 238 EQGGVAVLNADDDYVTGMAPRTQAKVVFFSADESSERHATADYRATNVQLDDFARASFDL 297

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                         Y   Q       I   + + +D    A ++        +R      
Sbjct: 298 HVPDGRTFPIQLQVYGAHQVANALAAIAVAVESGIDAEQVAKAMAAHVAASERRMDVQQL 357

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            G   +I++SYNANP SM+A I  L++      H +    AVLG M E+G+ ++  H  L
Sbjct: 358 TGNIVVINDSYNANPDSMRAGIDALARTAAGPTHQDASSWAVLGQMGELGDSAEDEHSSL 417

Query: 393 AEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            E L    I  +   G      AL D      ++             + + +   DVV+V
Sbjct: 418 GEYLVGRGIDRLIAVGESSNVHALADKAEELGLNTSRVPDTSTAADLVAAEVRPDDVVLV 477

Query: 450 KSSNSCGFYRLINLLLEE 467
           K+S + G +R+ + L  +
Sbjct: 478 KASYADGMWRVADSLAAK 495


>gi|53726028|ref|YP_104098.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
 gi|52429451|gb|AAU50044.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia mallei ATCC 23344]
          Length = 457

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 121/458 (26%), Positives = 198/458 (43%), Gaps = 16/458 (3%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I G ++    +     +S DSRS  P + F A+KG  +D HDF+     +GA   +V+  
Sbjct: 2   IPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDVAARGASAAIVSRS 61

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                   ++P   V D   AL  LA   R+R    ++A+TGS GKTT KEM+    ++ 
Sbjct: 62  PAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKTTVKEMIASIFAAA 117

Query: 134 KKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              +A     G++NN +G+PLTL R+       + ELGM+H GE   L  +  P +A++ 
Sbjct: 118 VGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVN 177

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
                H    + +E +A   A +   L   G      DD++  + +    A     I  F
Sbjct: 178 NAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR---VAATGNRIVDF 234

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A           + S + +   G  ++V  + +G H A+N L            +
Sbjct: 235 ALHGAAGGAPAAVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPL 294

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 L  F P +GR +  R A       T+ID++YNANP SM+AAI VL+  S     
Sbjct: 295 AAIKAGLEAFAPVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSA---- 350

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R+ V+G+M E+G+   +FH ++        I  ++  G       DA       H+ + 
Sbjct: 351 PRVLVIGEMGEVGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDA 409

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +   + ++      ++VK S      R+++ L  E
Sbjct: 410 AALVAALLAANFGAHATLLVKGSRFMKMERVVDALANE 447


>gi|270340250|ref|ZP_06007583.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
 gi|270332023|gb|EFA42809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bergensis DSM 17361]
          Length = 458

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 192/441 (43%), Gaps = 22/441 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  +DG+ F   A+ KG    V++             +  VD
Sbjct: 34  VTTDSRNCPKDSIFIALKGASFDGNKFAKAALDKGCSYAVIDEK--EYDDEADDRIILVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTTTKE+L+  LS         G++NN +GV
Sbjct: 92  DCLLTYKELAREHRRQFDIPVIGITGTNGKTTTKELLSAVLSEKYNVMHTEGNFNNDVGV 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    D  + E+G SH+G+I+ L   V P   +IT +  AHL  F   E +  A
Sbjct: 152 PKTLLRLNKTHDIAVVEMGASHVGDIKKLVDYVEPTCGLITNVGRAHLQGFGSFEGVMQA 211

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK------SKNADFQLRKW 263
           K E+++ L+           +  E L   +H   ++ I S+G+                 
Sbjct: 212 KGELYDYLKACHAPVFLNTSN--EHLVDMAHQRRLERIISYGQDDGAQVWGEVMSCDPFL 269

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K     S  E        EV  H +G +   N+L  + +        +   +AL  + P 
Sbjct: 270 KLQWGASHAEHHSPTSMQEVSTHLVGAYNLDNVLAAITVGLHFGVSEEQIRQALESYTPS 329

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +    + N     LI ++YNANP SM AAI    ++S        A+LGDM E+GE
Sbjct: 330 NNRSQFVETSRN----RLIIDAYNANPTSMAAAIDNFERMSMTQPRM--AILGDMRELGE 383

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +S+  H  +A+ L   +I  +WL G       +    S      + ++ +   + +    
Sbjct: 384 VSEEEHQKIADSLKASDIDTIWLVG------GEFAKTSCKFRKFKDVEEVKAALATEQPS 437

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           G  ++VK SN     +L   L
Sbjct: 438 GYCILVKGSNGMHLSQLTTEL 458


>gi|256838742|ref|ZP_05544252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
 gi|256739661|gb|EEU52985.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Parabacteroides sp. D13]
          Length = 427

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 117/447 (26%), Positives = 199/447 (44%), Gaps = 33/447 (7%)

Query: 24  QGFVNG--ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             F++   I+ DSR+      FFA+KG  +DG+ +   A+  G    V++         +
Sbjct: 8   DLFIHNPQITTDSRNCPKGSIFFALKGDKFDGNQYAGKALASGCVYAVIDNPDYY----I 63

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 VD+VL  L +LA   R      II ITG+ GKTTTKE+L   LS+        G
Sbjct: 64  GERTILVDNVLKTLQQLAHHHRKVLGLPIIGITGTNGKTTTKELLAAVLSTKFNLLYTEG 123

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NNHIGVPLTL R+  D +  + E+G SH G+I+ L  +V P+  +IT +  AHL  F 
Sbjct: 124 NFNNHIGVPLTLLRLTHDHEMAVIEMGASHPGDIKELVDIVHPNYGIITNVGRAHLEGFG 183

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNAD 257
             E +   K E+++ + ++        ++ +         +         ++ G+  + D
Sbjct: 184 SFEGVIRTKGELYDYIRRSKGKIFIKKENEYLQSIAKGIEQITYGNGDDAFASGQVVSCD 243

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L              + QGK   V  H IG +   N+L  + +        +   +A+
Sbjct: 244 PFL----------VFNWKQQGKLHTVETHMIGSYNLDNVLAAVAVGRFFKIPAERISRAI 293

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + + P   R +  +   N+    LI ++YNANP+SMK A+     +    +     +LGD
Sbjct: 294 AAYEPTNNRSQFKKTENNE----LIIDAYNANPSSMKVALDNFITMPVQPK---AIILGD 346

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G  S   H ++ E +       V+L G H   +              T + +   +
Sbjct: 347 MRELGPTSDELHAEVVEQIKKGQFDKVFLCGEHFSKVGKEFSP------FATTEAMTEEL 400

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   + G  +++K S+S G  +L ++L
Sbjct: 401 RRQPLKGYHILIKGSHSMGLEKLADIL 427


>gi|56476231|ref|YP_157820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate--D-alanyl-D-alanyl ligase protein [Aromatoleum
           aromaticum EbN1]
 gi|56312274|emb|CAI06919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase protein
           [Aromatoleum aromaticum EbN1]
          Length = 466

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 196/469 (41%), Gaps = 25/469 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T H+  QA+    +     G  + +  DSR I   + F A++G  +DGH+F++ A   G
Sbjct: 1   MTLHEAAQALG---VVATMPGNFSSVGTDSRKIKAGQLFVALRGERFDGHEFVVQAAADG 57

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   +V+     +      +P+  V+D   AL +LA   R R +  +I +TGS GKTT K
Sbjct: 58  AAAALVDARWAGTQPVPSPLPLLVVEDTRLALGRLAAHWRARFELPVIGVTGSNGKTTVK 117

Query: 124 EMLTIALSSIKKTYACIG--------SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           EM T  L +  +              + NN IG+PLTL  +       I E+GM+  GEI
Sbjct: 118 EMCTAVLRAQARRDGHGAEAVLATAGNLNNDIGLPLTLLELRSSHRAAIVEMGMNRPGEI 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  L RP +AV+T    AHL     +  IA  K  I+E L   G   +N DD+     
Sbjct: 178 AYLAGLARPTVAVVTNAQRAHLQGMGTVIGIAREKGAIYEALGPDGVAVINADDTQAGYW 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  + A        F  +  AD    +       S + +      + V     G H A+N
Sbjct: 238 RELNAARRTLV---FSLTPRAD-VAGECTLRGLGSHLVMTTPAGRIAVDLQVPGEHNARN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                       A  +   + L+ +    GR    +         ++D+SYNANP S++A
Sbjct: 294 ATGAAAACLAAGASPEAVAEGLAAYTGTRGR---LQRRAGPNGAVVLDDSYNANPDSLRA 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            I VL+       G++I VLGDM E+G  S   H ++        +  ++  G       
Sbjct: 351 GIDVLAATP----GQKILVLGDMGEIGWTSAQVHDEIGGYAKSKGVDALFALGEMSAVAA 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                    H+  +++ L   +   L    VV+VK S      R+ + L
Sbjct: 407 SNFGGG--GHHFASVEALVAALTRKLDGDTVVLVKGSRFMRMERVADAL 453


>gi|88192084|pdb|2AM1|A Chain A, Sp Protein Ligand 1
 gi|88192085|pdb|2AM2|A Chain A, Sp Protein Ligand 2
          Length = 454

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 124/472 (26%), Positives = 193/472 (40%), Gaps = 30/472 (6%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + L   LS+  KTY   G+YNN IG+P T+   P   +  + E G  HLG+I  L+ L R
Sbjct: 116 DXLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHXPEGTEKLVLEXGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G      +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKXQIADGXASGSLLLAPADPIVEDYL------PI 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N  +   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAXIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +    A         R +  + A       ++ + YNANP + K  +   S I
Sbjct: 286 LQEGVSEEQIRLAFQHLELTRNRTEWKKAANGAD---ILSDVYNANPTAXKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IAVL D  E+G+ S   H      LS   +  V   G  +  L     +   
Sbjct: 343 PANEGGKKIAVLADXKELGDQSVQLHNQXILSLSPDVLDIVIFYGEDIAQLAQLASQXFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             HV+Y       +  + L   ++ SL   D +++K SNS    +L+  L  
Sbjct: 403 IGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSXNLAKLVESLEN 454


>gi|33240501|ref|NP_875443.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33238029|gb|AAQ00096.1| UDP-N-acetylmuramyl pentapeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 466

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 114/442 (25%), Positives = 193/442 (43%), Gaps = 8/442 (1%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR+I     F  + G  +DGH F+    +KG     ++ D   +I    +  + VD
Sbjct: 30  VCTDSRNIKKGNFFVPLIGNKFDGHLFLEEVFEKGVQAAFISKDCNLAIPEE-LLYWQVD 88

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   A  KLA   R      ++A+TGS GKTTT+E++  +L  + +  A   + NN IGV
Sbjct: 89  DTQEAYQKLAFLHRRLFSIPVVAVTGSAGKTTTRELIHSSLVPLGEVLATSNNNNNDIGV 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL +  V+    + E+ M  LG+I  L+    P IAVIT I  +H+      + IASA
Sbjct: 149 PFTLLKANVNHSAIVLEMAMRGLGQIERLSKCACPDIAVITNIGSSHIGLLGSKQNIASA 208

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   +   G + +   D   E    +     I  +    KS           Q  + 
Sbjct: 209 KCEIAAHMNPNGFVIIPAGDQLLEKTLQEVWKGRIVRVDIESKSNPFFANEYDSHQTKKN 268

Query: 270 SWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                 L   + ++ +   I     Q     +  +  L    +  +   S+ +       
Sbjct: 269 VDYLGVLDSDNWQITYDGIIFQMPLQGRHNAINFMFALAVAYELNVPLDSIRNLSVNLPP 328

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               +L  G   ++DE+YNA+P S+ A++ +L+       GR  AVLG+M E+GE +  +
Sbjct: 329 GRNHSLTFGNINVLDETYNASPESVIASLDLLAT----KPGRHFAVLGNMYELGEKTIDY 384

Query: 389 HIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           H  + +      ++ + +   G    A+  A     ++    T +  FL ++S L  GD 
Sbjct: 385 HEQIVQHSIATGLTGLVICVNGPEAEAMLLAGQPLSYIEVVSTPEDAFLILKSWLNSGDY 444

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           +++K+S      R++ LL E +
Sbjct: 445 LLLKASRKVSLERILPLLKEAY 466


>gi|257092212|ref|YP_003165853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044736|gb|ACV33924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 456

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 143/456 (31%), Positives = 220/456 (48%), Gaps = 17/456 (3%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            +A  G  +G       +G+S DSRSIA  E F A++G ++DGHD++  A  +GA   +V
Sbjct: 7   ARATAGKVLG--ANATFSGVSTDSRSIAAGELFVALRGENFDGHDYVAAAKARGAAAAIV 64

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            TD    + +LS+P+  V +   +L  LA   R R    ++A+TGS GKTTTKEM+   L
Sbjct: 65  ATDAAEGLQALSLPLVQVAETRLSLGALAADWRGRFALPLLAVTGSNGKTTTKEMIASIL 124

Query: 131 SSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            +          G++NN IG+PLTL R+       I ELGM+H GEI +L  + RP +A+
Sbjct: 125 KAAYGEAVLATQGNFNNDIGLPLTLLRLNATHRAAIIELGMNHPGEIAYLAGIARPTVAL 184

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T    AHL+    +E IA+ K  I+ GL++TG    N DD + +L +++   L    + 
Sbjct: 185 VTNAQRAHLAGMGSLEAIAAEKGSIYTGLDETGVAVFNADDPWAKLWRSQCRGL---RMM 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG  + AD    K+     +S + +       +VV    G H A+N L           
Sbjct: 242 TFGFEQAADVT-GKFHLHGLESRLSLFAPDGQADVVLALPGQHNARNALAAATAALAAGI 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +      LS F   +GR    +         L+D++YNANP S++A I VL+       
Sbjct: 301 SLTAVQAGLSAFRGLKGR---LQRRTALHGAVLLDDTYNANPDSVRAGIDVLAATI---- 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G++I VLGDM E+GE+S  FH ++        I  +   G                H+  
Sbjct: 354 GKKILVLGDMGEIGEMSAQFHDEIGGYAKSQGIDLLLALGEASALAAHNFGSGGEHHH-- 411

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           ++D L   + + L     V+VK S      R+ + L
Sbjct: 412 SIDRLVASLTAELTPETTVLVKGSRFMRMERVADAL 447


>gi|315125599|ref|YP_004067602.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
 gi|315014112|gb|ADT67450.1| D-alanine:D-alanine-adding enzyme [Pseudoalteromonas sp. SM9913]
          Length = 462

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 147/469 (31%), Positives = 220/469 (46%), Gaps = 22/469 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+  F  L   +         +  +N I+ D+R++   E F A+KGP++DGH FI  A
Sbjct: 1   MIPM-DFDWLANVL-ATDYQGDNRKVIN-INTDTRTLCDGEVFLALKGPNFDGHKFIEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            QKGA  V+V+  +        I  F V D   AL  +  A   +     IAITGSVGKT
Sbjct: 58  KQKGAIGVIVDHAV-----DTDIAQFVVADTRIALGTIGTAVMAQVAPKTIAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    LSS     A  G++NN IGVPLTL R+     F + ELG +H+GEI + T 
Sbjct: 113 TVKEMCAAILSSKGDVLATKGNFNNDIGVPLTLLRLEPQHRFAVIELGANHIGEIAYTTA 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +AV+  +A AHL  F  ++ +A AK EI++GL++ G   +N D  F +    K  
Sbjct: 173 MTKPDVAVVCNVAAAHLEGFGSLQGVAQAKGEIYDGLKEDGIAIVNCDSDFSQYWLDKLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              IK   S  K     +          ++   +  +  S+ V     G H   N L+  
Sbjct: 233 TRNIKCFSSSEKLDI--WAEDISLDAQARASFTLCTKQHSVPVKLALPGKHNISNALIAA 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S     ++    AL+     +GR      +      T+ID++YNAN  S+KAAI +L
Sbjct: 291 ALTSEFDVSLEDIASALATMGEVKGRVNLIEAS---DSLTIIDDTYNANVKSVKAAIDLL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S I    +G RI  LGDM E+GE ++ +H ++ E      I  ++  G       D    
Sbjct: 348 SDI----QGHRILALGDMGELGEDARKYHQEVGEYALAQGIDELFTLGVLSKCASDVF-- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD---VVVVKSSNSCGFYRLINLLLE 466
            +   +    + +   IQ+S+   D    +VVK S S     L+  L+ 
Sbjct: 402 GLPNRHFSNREQMLQQIQNSISKVDKKITLVVKGSRSSRMELLVTDLVN 450


>gi|72381886|ref|YP_291241.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|72001736|gb|AAZ57538.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 465

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 111/468 (23%), Positives = 191/468 (40%), Gaps = 13/468 (2%)

Query: 6   TFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           TF DL++ + G       I     +  IS DSR+I   + F  + G  +D HD++  A  
Sbjct: 4   TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNKFDAHDYLDMAFD 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+      +  + +P + V D L A  ++A+  R      ++A+TGSVGKTTT
Sbjct: 63  LGIQAAVVSEKYNG-LVPIGLPHWVVPDTLYAYQQIALLHRRNLNLPVVAVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   LS + +  +  G+ NN IGVP TL          + E+GM   G+I  L+ + 
Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDIGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT +  AH+      E IA AK+EI   L   G + + + D   E    +  + 
Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTL 300
            I  +   G S N      +     +     +         +                 +
Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFAFQDIEPDYISQIDMQNNFILFEGRKFKLPLEGRHNAM 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  LT   +  +    +   K          ++ G + ++DE+YNA+P S+ A++ +L
Sbjct: 302 NFLLALTVATELGLSIKKLDQLKINMPIGRNRLVDCGQYLVLDETYNASPESVIASLELL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL 418
                   GR  AVLG M E+G  S   H  + +      ++ +     G     +K  +
Sbjct: 362 ----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGEESNIIKKTI 417

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +           + +   L  GD +++K S      +++  L +
Sbjct: 418 KELPNHDVVSNPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPYLQK 465


>gi|113952815|ref|YP_730736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
 gi|113880166|gb|ABI45124.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9311]
          Length = 458

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 192/437 (43%), Gaps = 16/437 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +     F  ++G  +DGH F+  A ++G    VV  D    +   S+  + VD
Sbjct: 33  VCTDSRLLTAGAFFVPLRGERFDGHRFLASATEQGIQAAVVARDSDIPVPQ-SLLHWIVD 91

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  ++A   R    + ++AITGS GKTTT+E++  AL+ +    A IG+ NN +GV
Sbjct: 92  DTLEAYQQMACLVRRNLNSAVVAITGSAGKTTTRELIRAALAPLGAVQASIGNNNNDVGV 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +       + E+GM   GEI  L+    P IAVIT I  AH+      E IA+A
Sbjct: 152 PLTLLGVDEQHAAVVVEMGMRGPGEIERLSRCAEPEIAVITNIGTAHIGRLGSREAIAAA 211

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K EI   L   G + +   D   +   A+  +  ++ +     + +++         +  
Sbjct: 212 KCEITAALSPDGLVVIPAGDPLLDAALAQCWSGRVRRVALVDDANDSEHVADDLGDYNPL 271

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +                  G H A+N ++ + +   L       +        K      
Sbjct: 272 TGRISLGN---DSYNCPLEGRHNARNFMLAIAVARTLGVAPADLV------QLKVEVPGG 322

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                  G  T++DE+YNA+P ++ AA+ +L+       GRR AVLG M E+G  S   H
Sbjct: 323 RNRKRQIGSLTILDETYNASPEAVFAALDLLAAQP----GRRFAVLGTMLELGTDSVGLH 378

Query: 390 IDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + +  +  N+  + +   G    A+ DA  R       ET +     +   L  GD V
Sbjct: 379 RAVIDHAATLNLDGLVVVATGAEAKAMSDASSRWPQFQQVETPEQAAEPLIEWLRPGDTV 438

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K+S      RL+ LL
Sbjct: 439 LLKASRGIALERLLPLL 455


>gi|255009968|ref|ZP_05282094.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147761|ref|ZP_07809954.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136528|gb|EFR53888.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 432

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 115/435 (26%), Positives = 187/435 (42%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    VV+    A   +  I    VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAAQALKDGCAYAVVDEAEYAPEDNKHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  L+         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLAKAHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + D  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHDLAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +     +        L+     A G+  I    ++                
Sbjct: 194 KGELYDYLREKDDSTVFIHHDNVYLM---DIARGLNLIPYGSENSLYVNGHVTGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    G   +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 251 FEWKAGKDGNLHQVQTQLIGEYNFPNALAAVTIGRFFGVESSKIDEALAGYTPRNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    TLI ++YNANP SM AA+     ++   +   + +LGDM E+G  S + H
Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVERK---MLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + E L   +   V L G            +           L   +Q+    G  +++
Sbjct: 364 HKIVEYLQECSFEKVLLVGELF------ASTNPPYPTYANAQELIKDLQTENPQGYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      ++  L
Sbjct: 418 KGSNGIKLSTVVEFL 432


>gi|256827372|ref|YP_003151331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
 gi|256583515|gb|ACU94649.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cryptobacterium curtum DSM 15641]
          Length = 485

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 25/485 (5%)

Query: 5   WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  D+ +   G  +      +  V G + DSR + P   + A+ G  +DG DF ++A+ 
Sbjct: 3   LSASDIARFTGGMLVVPPAHEESLVAGFTWDSRQVQPGCLYVALPGERHDGFDFCINALD 62

Query: 63  KGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  ++V      ++          +  V+D   A   LA A R R   ++IAITGS G
Sbjct: 63  AGAACLLVMRSPDEALTLCAQRSGAAIVCVEDTFTAFTDLAAAWRSRLSGSVIAITGSSG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK ++   L+      A  G+ NN +GVP TL R   D  F + E+GM   G+I  L
Sbjct: 123 KTTTKNLVRDVLARAGSVVATQGNQNNELGVPATLLRAEEDTQFVVVEMGMRGRGQIESL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              VRP +A++T +  +H+      + IA AKAEI  G++    I        F  +   
Sbjct: 183 CRFVRPDMALVTNVGESHIELLGSRDGIARAKAEIIAGVKANTGIAFINASDDFASMLPA 242

Query: 239 S-------------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                            G +      +               +++               
Sbjct: 243 YGSADERGVEILFFDGSGKEPASYAAQDGIEVPSTFASDIELDEAGCARFTLHTPTGTAS 302

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+       ++ +    +A   +           R R         ++D++
Sbjct: 303 VHLALAGLHNVHNATAAAAVGSQVGLSASVIVDALEKATSLDGRGRVVRTASGVVVVDDA 362

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SMKA++   + +  H  GR IAVLGDM E+G+ ++  H  +  +++   I  + 
Sbjct: 363 YNANPDSMKASLGSFAAM--HFAGRHIAVLGDMGELGDTAEEAHARIGSLVASLPIDLII 420

Query: 406 LSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             G     +  A                       + S +  GD ++VK+S+S G   ++
Sbjct: 421 CVGSLACGIARAAVAAGMPEDAAICVTDASAALDQVVSLVNAGDGILVKASHSVGLEAVV 480

Query: 462 NLLLE 466
             L++
Sbjct: 481 KGLVK 485


>gi|33151487|ref|NP_872840.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
 gi|33147707|gb|AAP95229.1| UDP-MurNAc-pentapeptide synthetase [Haemophilus ducreyi 35000HP]
          Length = 467

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 130/475 (27%), Positives = 198/475 (41%), Gaps = 30/475 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   + Q + G  IG      V  ++ D+R       FFA+KG H+D H ++  A
Sbjct: 1   MIKLTT-KQVAQILNGQLIG-DEYLVVETVNTDTRQAVENGLFFALKGNHFDAHHYVDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +G   +VV   M+     ++ P   V D   AL +LA   + +     IAITGS GKT
Sbjct: 59  IAQGCIALVVEQRML-----INAPQIIVADTRLALGELAKWLKAKLNPKTIAITGSSGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSY----NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM    L  +      +       NN +GVPLTL R+     F + ELG +HLGEI 
Sbjct: 114 TVKEMAAKILQKLTACADEVLYTSGNLNNDLGVPLTLLRLTEQHKFAVIELGANHLGEIA 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T + +P   V+  +A AHL  F  +  +A AK EI+ GL   G   +N          
Sbjct: 174 YTTSITQPDACVVNNVAAAHLEGFGSLAGVAQAKGEIYRGLPPEGIAIINQASYSSAWQT 233

Query: 237 AK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              S  +    +Y   + K  DF           S   +      +E+    +G H   N
Sbjct: 234 EIGSRKVQSFALYPSAEHKPVDFSAENVHLHLNGSTFMLHSPQGEIEINLPYLGEHNVSN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L    +V  + AD+      L      +GR           +  LID++YNAN  SMK+
Sbjct: 294 VLAASALVMAVGADLAAIKAGLEQPVAVKGRLC---PLPINRYCLLIDDTYNANVDSMKS 350

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+ VL          RI  + DM E+G+ S + H ++A+ +    +  V   G     + 
Sbjct: 351 AVQVLKNYQA----FRIFAVADMGELGKDSVACHQEVADFVREAELDLVVSFGKESAVIS 406

Query: 416 DALPRSIHVHYSETMDGLFLFI-----QSSLVDGDVVVV-KSSNSCGFYRLINLL 464
                +   H+      +  F+     Q       +V++ K S S     LI+ L
Sbjct: 407 -----NQSTHHFTDKQAMHNFLMPIIMQKIAEKQPLVLLAKGSRSQKMETLISSL 456


>gi|317478547|ref|ZP_07937705.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
 gi|316905300|gb|EFV27096.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 4_1_36]
          Length = 432

 Score =  223 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 189/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG  ++G+ F   A++ G+   +V+ +  A  G        
Sbjct: 14  TSVTTDSRNCPQGSLFIALKGESFNGNAFAARALESGSAYAIVDEEAYAPAGDT--RYIV 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R + +  II ITG+ GKTTTKE+++  LS        +G+ NNHI
Sbjct: 72  VENSLKTLQQLANYHRRQMRTPIIGITGTNGKTTTKELMSTVLSQTHNVLYTLGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E I 
Sbjct: 132 GVPLTLLRLRPEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGII 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L       +   +    L   K  A G+  I    +               
Sbjct: 192 KTKGEMYDYLRTRKEATIFIHNDNPYL---KKIAYGLHQIAYGSEDGLYINGHVTGNSPY 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                +   + K  EV    IG +   N L  + I      + +   KAL+ + P+  R 
Sbjct: 249 LTFEWKTDNESKYHEVQTRLIGEYNFPNALAAVTIGHFFGVEPEKIDKALAGYTPQNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM A+IS    +    +   + +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMMASISNFRNMQAENK---MLILGDMRELGKDSAD 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A+ L       V L G    A +              +  L   +Q     G  +
Sbjct: 362 EHQKIADYLEECGFKDVVLVGELFAATRH------PYQSYPDVTALIAELQREKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN       +  L
Sbjct: 416 LIKGSNGIKLSSTVEYL 432


>gi|241760221|ref|ZP_04758317.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
 gi|241319332|gb|EER55797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria flavescens SK114]
          Length = 438

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 128/448 (28%), Positives = 195/448 (43%), Gaps = 22/448 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++   
Sbjct: 3   SENQPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDVLAAGATAVVVSREDCAALKGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 V D L AL KLA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVGDTLVALQKLAKAWRENVNPFVFGITGSSGKTTVKEMLAGVLRHRFGDEAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT +  P++A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELSLLTRIAGPNVALVNNALRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI+EGL   G   +  +D+     +A +  L  +T          D
Sbjct: 179 CGFDGVADIAKAKSEIYEGLLSDGIALIPCEDANIATFEASTAQLNAQTFGVAS----GD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 +        ++    + + VV    G H   N +    +       +      L
Sbjct: 235 IHAENIELKPLSCEFDLVRGNERVAVVLPVPGRHNVHNAVAAAALALAAGLSLAEVSDGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR    +        TLID++YNANP SMK AI VL+ +       RI V+GD
Sbjct: 295 KNFSNIKGRLNIKQGIKG---ATLIDDTYNANPDSMKVAIDVLAAMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAAETF--GAEGLWFADKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   L +   V+VK S       ++  L
Sbjct: 406 LSHDLPERATVLVKGSRFMKMEEVVEAL 433


>gi|299768540|ref|YP_003730566.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
 gi|298698628|gb|ADI89193.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter sp.
           DR1]
          Length = 466

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 196/459 (42%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAETGDAFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133
                 + I    V D   AL +L    R + ++  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  -----DVEIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G E I  AK+EI+  +   G   +   D F   +     A     I +FG  
Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEILD---AAKAHRISTFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D      +   + +   +        V     G H  QN    +     +   ++  
Sbjct: 255 VGGDVYATDIELLPQSTNFTLHTPQGISAVKLPFAGEHNVQNATAAVAFALAIGIGLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L      +GR    +    +  +  ID++YNANP SM       +Q+    +G ++ 
Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPTSM----RAAAQVLLQQQGLKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  V   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIIAVGQFAPAALEGADSHSNKVKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|262280346|ref|ZP_06058130.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258124|gb|EEY76858.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 466

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 195/459 (42%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     + F A+KG  +D HDF+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAETGDVFLALKGERFDAHDFVAQVAANGCQIAIVERPL 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSI 133
                 + I    V D   AL +L    R + ++  +IA+TGS GKTT KEML   LS +
Sbjct: 85  -----DVDIAQLVVADTRLALGQLGAYRREQNTQLKVIALTGSSGKTTAKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  F + ELG SH GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQFAVMELGASHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G E I  AK+EI+  +   G   +   D F   +   + A  I T    G  
Sbjct: 200 TAHLGEFGGREGICRAKSEIYRHILPNGVAIVPQQDDFTAEIHKAAQAHRISTFGVGG-- 257

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D      +   + +   +     +  V     G H  QN    +     L   ++  
Sbjct: 258 ---DIYATDIELLPQSTNFTLHTPQGTSTVKLPFAGEHNVQNATAAVAFALALGIGLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L      +GR    +    +  +  ID++YNANP SM       +Q+    +G ++ 
Sbjct: 315 VQGLEQAQGAKGRLNFIQ----KSPYLFIDDTYNANPNSM----RAAAQVLLQQQGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  V   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGHDLAQLPLDHIIAVGQFASAALEGADSHSNKVKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|271964370|ref|YP_003338566.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
 gi|270507545|gb|ACZ85823.1| UDP-N-acetylmuramyl pentapeptide synthase [Streptosporangium roseum
           DSM 43021]
          Length = 465

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 198/475 (41%), Gaps = 25/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G   G   P+  V G + IDSR++ P   F AI+G   DGHDF  
Sbjct: 1   MIPLP-LARIAEITSGALAGMADPRAVVRGPVVIDSRAVEPGSLFVAIRGDRVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSV 117
            AV+ GA  V+ +         +  P   V D + AL  LA A        T+I +TGS 
Sbjct: 60  QAVEAGAVAVLASRP-------VDAPAVVVGDTVTALADLATAVCADLPSTTVIGVTGSA 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L    + I  T A + S+NN IG PLT+ +   D  + + EL     G I  
Sbjct: 113 GKTSTKDLLARLTARIGPTIAPVESFNNEIGHPLTVLKAGEDTRYLVLELSARDAGHISH 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P I V+  +  AHL  F G + IA AK E+ E L   G   LN DD     +  
Sbjct: 173 LARIAPPRIGVVLNVGTAHLGVFGGKDAIAKAKGELVEALPADGVAVLNADDPLVAAMAR 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A       +   +  A+          ++      L+  S         Y       
Sbjct: 233 RTDARVAWYGRAESAAVRAEGVTLD-----DRGRAAFTLRTPSGAAPVVLRLYGEHAVEN 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                 +     +  A  A  +   +     R          T+I+++YNANP SM+AA 
Sbjct: 288 ALAAAAAAYELGLPVATIAEELSEAEPRSRWRMEVTDRADGVTVINDAYNANPDSMRAAF 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410
             L  ++  G  RR AV+  + E+GE S + +  +  + +   +  +++ G         
Sbjct: 348 GALDALA--GGRRRFAVIAALRELGEESAALNEGVGRMAAGAGLEGLFVVGPDAGPVLAG 405

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             A  D +P +  V +          + + LV GDVV+VK   + G  R+   L+
Sbjct: 406 AGAAVDGVPSATRVTHVADAQEAAAALSALLVPGDVVLVKGPRAAGLERVAAALV 460


>gi|90413036|ref|ZP_01221034.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
 gi|90326051|gb|EAS42490.1| hypothetical UDP-N-acetylmuramoylalanyl-D-glutamyl-2 pentapeptide
           synthase [Photobacterium profundum 3TCK]
          Length = 468

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 124/482 (25%), Positives = 194/482 (40%), Gaps = 31/482 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V  +S D+R+++    F A+KG  +D HDF  +A
Sbjct: 1   MIEVQ-LAQLADVLGAELIGN--DITVANVSTDTRTVSAHTLFIALKGERFDAHDFCQNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGS 116
           +  GA  ++V+  +      + +P   V D   AL  L    +           IA+TGS
Sbjct: 58  MDNGAAALLVSRHL-----PVELPQLVVKDTHQALGLLGAWLKQSMEQDHGLKTIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM    LS      +  G++NN IGVPLTL R+  + +F + ELG +H  EI 
Sbjct: 113 CGKTTVKEMAAEILSQKGNVLSTAGNFNNDIGVPLTLLRLTAEHEFAVIELGANHQQEIA 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLNYDDSFFEL 234
           + T+LV+P +A++  +A AHL  F  +  +A AK EIFEG       +       +    
Sbjct: 173 YTTNLVKPQVALVNNLAAAHLEGFGSLAGVAKAKGEIFEGLTAPLNDSGLSTAIINVDSN 232

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A    L  +         + D                      S   +   +      
Sbjct: 233 DLAMWQPLLAQHAVKTFSLTDIDADFSATDIFINSEGRACFTMRTSAGTIDITLTLAGIH 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+   L   ++      T  +  +          R   +  +    LID++YNA+ AS+K
Sbjct: 293 NVSNALAAAALAMTVGATLEQVKAGLEQVVNVKGRVDVSHPREGLRLIDDTYNASVASVK 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI +L+  +    G+R  VLGDM E+GE S S H ++AE      +  V+  G     +
Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEESASLHREVAEYAMTKALDKVFTFGCASAVV 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLV---------DGDVVVVKSSNSCGFYRLINLLL 465
            D         +      L   +Q+ L              V+ K + S     +I  L 
Sbjct: 409 SDL----NQGQHFADKSKLIEQLQAQLHLRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464

Query: 466 EE 467
           E+
Sbjct: 465 ED 466


>gi|317484859|ref|ZP_07943751.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
 gi|316923905|gb|EFV45099.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bilophila wadsworthia 3_1_6]
          Length = 472

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 116/470 (24%), Positives = 209/470 (44%), Gaps = 17/470 (3%)

Query: 5   WTFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +F ++++A+ G ++ G  P G V G+  DSR++ P   F  I G  +DGHDF + A++ 
Sbjct: 3   LSFEEIVRAVDGSAVAGAAPCGIVEGVGTDSRAVKPGSLFVCIPGETFDGHDFAVKAIEA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122
           GA  ++V+ +   ++    +P+  V+D + AL KLA   R R     +I +TG+ GKTT 
Sbjct: 63  GAAALLVSRNPFDAVPP--VPLILVEDTVKALGKLAHCWRERLGETRVIGLTGTAGKTTV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+L   LS    T     + NN IG+PL++     +  F + E G+SH  ++  L  ++
Sbjct: 121 KELLAQVLSRRGLTAKTHMNLNNQIGLPLSMLAATGEEAFWVMEAGISHPNDMDELGAIL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +A+I  + P H +        A  K+++   L   GT  ++ D       +      
Sbjct: 181 EPDLALILNVGPGHAAGLGDR-GTAHYKSKLLAHLAPGGTAIISADYPDLA--REARAVR 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +S    +             ++    + L G S++V     G   A+N++    +
Sbjct: 238 QELVFFSTSGRQVDYRAAYVVPAGEDKGLFRLWLDGVSIDVEAPFRGAFGAENVIAVAAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +      +     + R    R     G + +ID+SYNANP S    +   ++
Sbjct: 298 AHRLGLGAEEIAAGFAGAALPKQRFACSR----AGDWLVIDDSYNANPLSFSRMLEAAAE 353

Query: 363 ISP-HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           ++  H +   + VLG+M E+G LS+  H +L  +++      V   G H+   +D L   
Sbjct: 354 MAGDHADRPLVCVLGEMGELGSLSEDEHRNLGRLVADIKPRLVCWKGGHLEEFEDGLHAG 413

Query: 422 IHVHYS---ETMDGLFLFIQS-SLVD-GDVVVVKSSNSCGFYRLINLLLE 466
            +        + + +F  + +  L   G V++ K S S     L++   E
Sbjct: 414 RYGGAFCPVTSAEDMFKGLAACDLGSGGGVILFKGSRSNKLETLVSAFTE 463


>gi|298346704|ref|YP_003719391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|298236765|gb|ADI67897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus curtisii ATCC 43063]
          Length = 480

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 126/486 (25%), Positives = 206/486 (42%), Gaps = 33/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L +AI            + G    DSR ++  + F A+ G + DGH F+    ++
Sbjct: 1   MTLDALREAIG--LEPGENSTRIQGSAHTDSRLVSTGDVFVALPGENTDGHHFLGSVARR 58

Query: 64  GAGLVVVNTDMVASIGS--------LSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109
           G  + +V+ D    +            + V  V D   AL +LA A   + +A       
Sbjct: 59  GGKVAIVSHDRTEILNQGWATAEELDQLTVLQVSDPQYALGRLARAHLRQLRAQARGGTG 118

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+   T A + S+NN +G+PLT+    V  ++ + 
Sbjct: 119 KLKLVIGITGSAGKTTTKDLTKQLLSTKGATVAPVASFNNEVGLPLTVLEADVSTEYLVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G+I +LT +    +A++  +  AHL ++S +E +A+ KA I E L  +G   L
Sbjct: 179 EMGASQPGDIAYLTDIAPLDVALVLMVGVAHLESYSSVEALAAEKATILENLGPSGMAIL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVV 284
           N DD   E +  ++       +  F   KN   ++   +     +    +     S  V 
Sbjct: 239 NADDPRVEAMSGRT----SGRLMYFSTKKNTPVRITDLRLDEAARGSFLLHTPEGSAPVQ 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N +    I  +           LS   P            +     LID+
Sbjct: 295 LQLLGAHHVTNAVAAAAIAHVAGMTPAEIATVLSNATPVSEHRMNLVHLADGVD--LIDD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP S++AA+ V++        R + VLGDM E+GE S   H ++    +   IS +
Sbjct: 353 AYNANPDSVRAALDVIA--KSGATRRVVIVLGDMLELGETSPQLHGEIGRYAANLGISVL 410

Query: 405 WLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
              G     +     AL R    H           +Q  +  GD+++VK S+  G ++L 
Sbjct: 411 LTVGPMAKHIESAYSALKRDGESHQVMDATAAGRLLQEIVRPGDLILVKGSHGSGLWKLA 470

Query: 462 NLLLEE 467
             + E 
Sbjct: 471 QEIEER 476


>gi|257124998|ref|YP_003163112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
 gi|257048937|gb|ACV38121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Leptotrichia buccalis
           C-1013-b]
          Length = 464

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 116/459 (25%), Positives = 188/459 (40%), Gaps = 31/459 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +N +SI+S+ +   + F AI+G    G+ F+  A++KGA   V +++ V      + 
Sbjct: 18  DFKINNVSINSKELNKNDIFVAIRG----GNSFVNEALEKGA-FAVYDSEAVKIDEKYAE 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             F V D +  L K A   R      +I ITGS GKTT K+M+   LS   K     G+Y
Sbjct: 73  RAFFVKDSIEFLQKFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTEGNY 132

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+P TL R   D DF I E+GMS  GEI  L  +  P I VIT I  +HL      
Sbjct: 133 NNHIGLPFTLLRAEKDDDFIILEMGMSDFGEIDLLGQIALPDINVITNIGESHLEFLKTK 192

Query: 204 EEIASAKAEIFEG------LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
           E +  AK EI         +        N      E+++A +         +        
Sbjct: 193 ENVFLAKTEIIPHIKSTLVINGDDKYLKNVKAENIEIVRALNLRNNEYEDKTSDFYYGDI 252

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                      + + ++           + +G H   N++M + +      +     +A+
Sbjct: 253 HFDESGTNFFLKYFGKMCQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIISEAV 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                   R       +  G  T I+++YNA+P SMK ++   S I    +  +I VLGD
Sbjct: 313 KNIELTGMRF----QIIENGNTTYINDAYNASPMSMKKSLETFSLI--FNDKLKIMVLGD 366

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------------RSIHV 424
           M E+GE     H DL + +   N   ++L G  + +L + +              ++   
Sbjct: 367 MLELGERELEIHRDLFDTIKNTNFDKLYLFGERMKSLLEKIKENMDNGNLENESLKNKEF 426

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            Y +  + +   I+        V++K+S       +I  
Sbjct: 427 EYFDEKNKIKDRIREISESK-AVLLKASRGMKLEEIIEK 464


>gi|77462652|ref|YP_352156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387070|gb|ABA78255.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 477

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 249/475 (52%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +      G +          G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDEAAATTGGRATRAFAA---TGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSR--RPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLSAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL+      F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|325829773|ref|ZP_08163231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
 gi|325487940|gb|EGC90377.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eggerthella sp. HGA1]
          Length = 494

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 116/494 (23%), Positives = 203/494 (41%), Gaps = 40/494 (8%)

Query: 8   HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +     P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRP   ++  +  +H+      E IA AKAE+   L +         D  +     +   
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------------------------- 276
           L  + + +     +A    R+ +  + Q+                               
Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAQTARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + ++        G H   N      +       +     AL+   P+ GR +  R     
Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGG- 364

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             FT+++++YNANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  
Sbjct: 365 --FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFA 420

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +  +   G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S
Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480

Query: 453 NSCGFYRLINLLLE 466
           +  G  R++  L+ 
Sbjct: 481 HFMGLTRVVEGLVN 494


>gi|323343902|ref|ZP_08084129.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
 gi|323095721|gb|EFZ38295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella oralis ATCC 33269]
          Length = 436

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 181/435 (41%), Gaps = 15/435 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A++G ++DG+ F   A++KG    +V+                VD
Sbjct: 17  ITTDSRICPKDSIFIALRGENFDGNKFAETALEKGCAYAIVDEQ--KYQKPDDSRYILVD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L    +LA   R R    II ITG+ GKTTTKE+++  L          G++NN +GV
Sbjct: 75  NCLKTYQQLAREHRRRFHIPIIGITGTNGKTTTKELVSAVLGKKYSVLHTDGNFNNDVGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+       + E+G SH G+I+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 135 PKTLFRLSEKHQIAVIEMGASHRGDIKTLVEIVEPDYGIITNVGKAHLQGFGSFEGVIRT 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L         + ++    L   S  L +         + +             
Sbjct: 195 KGELYDYLRAKQGGNKVFINADNPYLMNISQGLTLIKYGKRDDCELSVKGEVTGCSPFLD 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                   G   EV    IG +   NML    I            +ALS + P   R + 
Sbjct: 255 FRWYNTQAGHWNEVHTRMIGAYNIDNMLAAACIGLHFGISEADIDEALSKYTPSNNRSQL 314

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    LI ++YNANP SM AAI     +    +   IA+LGDM E+G  S+  H
Sbjct: 315 TVTNDNK----LIVDAYNANPTSMHAAIENFKAMHVSPK---IAILGDMRELGNASKEEH 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L   +  +VWL G      K    +         ++ +   +Q++   G  +++
Sbjct: 368 QRIADELKTADFDNVWLVGEEFYNTKSGFRK------FHNIEEVKTALQTNKPKGCYILI 421

Query: 450 KSSNSCGFYRLINLL 464
           K SN     +L  LL
Sbjct: 422 KGSNGLHLSQLPELL 436


>gi|153835407|ref|ZP_01988074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
 gi|148868063|gb|EDL67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Vibrio
           harveyi HY01]
          Length = 454

 Score =  222 bits (566), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 197/472 (41%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +     G  IG      +  +S D+RSI     F A+ G  +D H+F   A
Sbjct: 1   MITV-TLSQIADITGGERIGN--DLSIESVSTDTRSIEQGALFVALVGERFDAHNFCQQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+ GAG ++V   +  ++  + +      D   AL ++A       +   +AITGS GKT
Sbjct: 58  VESGAGALLVQKRVNVNVPQVVV-----GDSKVALGQVAAWVHQTCQTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L    K     G++NN IGVPLTL R   D D+ + ELG +H+GEI + T 
Sbjct: 113 TVKEMVASILQLKGKVLFTAGNFNNDIGVPLTLLRSQQDDDYAVIELGANHIGEIEYTTQ 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++  +A AHL  F  I+ +  AK EI++GL   G   +N D +          
Sbjct: 173 LVKPDIAMVNNVAAAHLEGFGSIDGVKQAKGEIYQGLAAGGIAIVNLDSNGGAKWDEVLA 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + T                     E S+            +  GI         +  
Sbjct: 233 DKNVITFSQSNADAYFYASNIVMSAAGEASFDLHIAATSQEIELSLGIIGQHNVANAIAA 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+++        I   S          R           LID+SYNA+  +MKAA+ +L
Sbjct: 293 SIIALKMGATLEEI--RSGLKHLNKVKGRVEVEELSDKIKLIDDSYNASVPAMKAAVDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +G+R  +LG+M E+GE S + H  + E  +     HV   G     + +    
Sbjct: 351 AAF----QGQRWLILGNMAELGEESLALHRQVGEHAAPQKFEHVLTYGADAKVISEL--- 403

Query: 421 SIHVHYSETMDGLFLFIQSSLV----DGDVVVVKSSNSCGFYRLINLLLEEF 468
                + ET   +  +I+  L     +   ++VK +N    + +   L E +
Sbjct: 404 -CDGIHFETHQEMIDYIKQHLDQAVPEHHTMLVKGANGARMFEVAAALKEYY 454


>gi|124025377|ref|YP_001014493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|123960445|gb|ABM75228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. NATL1A]
          Length = 465

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 112/468 (23%), Positives = 192/468 (41%), Gaps = 13/468 (2%)

Query: 6   TFHDLLQAIQGHSIG---IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           TF DL++ + G       I     +  IS DSR+I   + F  + G  +DGHD++  A  
Sbjct: 4   TFKDLIK-LWGTLDNQKEIDLDLPIGRISTDSRTIEKGDFFVPLVGNTFDGHDYLDMAFD 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+      +    +P + V D L A  ++A+  R      ++A+TGSVGKTTT
Sbjct: 63  LGIQAAVVSEKYNG-LVPTGLPHWVVPDTLYAYQQIALLHRRNLSLPVVAVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   LS + +  +  G+ NN +GVP TL          + E+GM   G+I  L+ + 
Sbjct: 122 RELIRAILSPLGEIVSSRGNENNDVGVPKTLLSGSETDAAFVLEMGMRGFGQITRLSRVA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IAVIT +  AH+      E IA AK+EI   L   G + + + D   E    +  + 
Sbjct: 182 EPDIAVITNVGQAHIGILGSRENIAKAKSEITSYLSPDGVVIIPFGDYILEKALLEKWSG 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--NMLMTL 300
            I  +   G S N      +     +     +         +                 +
Sbjct: 242 RIVRVEIEGFSLNWLDCNNEHFALQDIEPDYISQIDMQNNFILFEGRKFKLPLEGRHNAM 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  LT   +  +    +   K          ++ G + ++DE+YNA+P S+ A++ +L
Sbjct: 302 NFLLALTVATELGLSIKKLDQLKINMPIGRNRLVDCGQYLVLDETYNASPESVIASLELL 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL 418
                   GR  AVLG M E+G  S   H  + +      ++ +     G     +K  +
Sbjct: 362 ----VSKPGRHFAVLGTMLELGSESILLHQKVLKKAIELGLTGIVFVSCGEESNIIKKTI 417

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +     T     + +   L  GD +++K S      +++  L +
Sbjct: 418 KELPNHDVVSTPKDAAMSLLPWLSPGDNILIKGSRKLELEKVLPFLQK 465


>gi|116074569|ref|ZP_01471830.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
 gi|116067791|gb|EAU73544.1| hypothetical protein RS9916_28584 [Synechococcus sp. RS9916]
          Length = 488

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 118/469 (25%), Positives = 184/469 (39%), Gaps = 21/469 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-------ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               L+Q + G   G+    +V         +  DSR +     F  + G  +DGH F+ 
Sbjct: 28  NLGQLVQ-LWGEPAGLTADQWVQRQSEPLGPVCTDSRRLEAGALFVPLVGEQFDGHAFLA 86

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A + GA   +V     AS+    +  + V D   A  +LA   R +  A ++A+TGS G
Sbjct: 87  DAARCGAQAALVAAGSNASLPE-GLLHWRVPDTTLAYQQLASLHRQQLNAAVVAVTGSAG 145

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+E++  AL+S+    A   + NN IGVPLTL          + E+GM   GEI  L
Sbjct: 146 KTTTRELIRAALASLGPIQASASNNNNDIGVPLTLLGTTQHHAAVVVEMGMRGPGEIERL 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +   +P IAVIT I  AH+      E IA+AK EI   L+  G + +   D   E   A+
Sbjct: 206 SRCAQPDIAVITNIGTAHIGRLGSREAIAAAKCEITAALKLDGVVVIPAGDPLLETALAR 265

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                I  +   G     + QL      ++       L     +      G H A+N L+
Sbjct: 266 VWQGRIHRVALVGDPGLTNSQLPAANDLADVDEQSGVLTLGEFDYRMPLAGRHNARNWLL 325

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              + S L  D D                       N+          +    +   A+ 
Sbjct: 326 ARAVASGLNVDSD----------SLVALDVDVPGGRNRRLKLGALTVLDETYNASPEAVL 375

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416
               +     GRR AVLG M E+G+ S + H  + E      +  + +   G    A+ +
Sbjct: 376 AALDLLAQQPGRRFAVLGTMLELGDESAALHRAVVERAVALKLDGLVVVTSGAEATAMAE 435

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A           + +     ++  L  GD +++K+S      RL+  L 
Sbjct: 436 AGASLERFAVVASPEAAAEPLRGWLSAGDCLLLKASRGVALERLLPALE 484


>gi|288926619|ref|ZP_06420534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
 gi|288336588|gb|EFC74959.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           buccae D17]
          Length = 439

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 188/439 (42%), Gaps = 19/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+    +  VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNG--RLILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ LE    +    + +   +  A     G    Y   +  N + ++         
Sbjct: 194 KGELYDFLESHNGLLFLNESNPDLMEMAAQRNFGRIISYGRDEGGNVEGEVIDCSPFLNF 253

Query: 270 SWMEV----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            W +     Q+   + EV  H IG +   NML  + +             AL  + P   
Sbjct: 254 RWRQHLHAGQMPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIPSNN 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R              LI ++YNANP+SM AAI     +    +   +A+LGDM E+G +S
Sbjct: 314 RS----QLETTEHNRLIVDAYNANPSSMAAAIDNFKLMKAERK---MAILGDMLELGTVS 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H    + L+   I  VWL G        A  +       + +D +   I +   +  
Sbjct: 367 DEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRPENY 420

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K SN     +L  LL
Sbjct: 421 YILIKGSNGIHLSQLPELL 439


>gi|327404532|ref|YP_004345370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
 gi|327320040|gb|AEA44532.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Fluviicola taffensis
           DSM 16823]
          Length = 427

 Score =  222 bits (566), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 21/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  D+R I     FF +KG ++DG+ F   A+Q+GA   VV+       G        
Sbjct: 12  TGIETDTRKIQKGSLFFCLKGLNFDGNKFAQEAIQQGAIAAVVDNPEYHIEGKT----IL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDD L AL  LA   R + +  II ITGS GKTT+KE++++ LS+    +   G+ NNHI
Sbjct: 68  VDDTLLALQNLAKHHRCQFQIPIIGITGSNGKTTSKELISVVLSTQLHVHFTSGNLNNHI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL ++    +  + E+G +  G+I+ L  +  P   +IT I  AHL  F  +E + 
Sbjct: 128 GVPLTLLQLNTTHEIAVIEMGANKPGDIKELVEIALPTHGIITNIGRAHLEGFKSLEGVI 187

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+F  L +         +           +      ++   + + +          
Sbjct: 188 KTKTELFNFLAQNRGHIFANKED------ETITSHLPSNTHNHFYNDSKELHGELISLNP 241

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +    +    S ++  + +G +   N L  + I        +   KA+S + P   R 
Sbjct: 242 FVNMTWSEPNYTSSDIHTNLVGEYNFINFLAAIRIGRFFGISAENCNKAISDYQPTNNRS 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N    TLI + YNANP SM++A+S  ++I  H +   I +LGDM EMG+ + +
Sbjct: 302 QVTKTEKN----TLIVDCYNANPTSMRSALSSFAKIDNHAK---IFILGDMREMGDEAPA 354

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H ++ +      +S  +  G   L  K       +  + ++ D L      +     ++
Sbjct: 355 VHEEVIQQTIDLRLSG-FFIGEEFLKFK---GTHPNAIFLKSTDPLIEHFSQNPPADLLI 410

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      ++I  L
Sbjct: 411 LLKGSRGISLEKVIPYL 427


>gi|260593466|ref|ZP_05858924.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
 gi|260534582|gb|EEX17199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           veroralis F0319]
          Length = 440

 Score =  222 bits (566), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 116/442 (26%), Positives = 185/442 (41%), Gaps = 24/442 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  +DG+ F   A+ KG    +V+    A        +  V+
Sbjct: 16  VTTDSRYCPEGSIFIALKGALFDGNKFAKAALDKGCSYAIVDEKEYAD--PTDKRIILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R +    +I ITG+ GKTT+KE+++  L+   K +    +YNN +GV
Sbjct: 74  DALVTYKELAREHRRQFSIPVIGITGTNGKTTSKELISTVLAEKYKVHHTEANYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLGIGSDDEIAVIEMGASHPGDIKKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD-------FQLRK 262
           K E+++ L+    +     +     L   +       I ++G+   AD            
Sbjct: 194 KGELYDYLKAHDALLF--LNESNADLTEMAAQREFDRIITYGQDDTADVQGKVISCAPFL 251

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
             +    S  + Q      EV  H IG +   NML  + I             AL  + P
Sbjct: 252 KFEWQSSSLNKQQPANTIYEVQTHLIGSYNLDNMLAAITIGLHFGVTPQQINHALESYIP 311

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                             LI ++YNANP+SM AAI     +       ++A+LGDM E+G
Sbjct: 312 ----HNNRSQLTETAHNKLIVDAYNANPSSMAAAIENFRLMEVE---HKMAILGDMRELG 364

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
             S   H  + E+L    +++VWL G         L  +      + +D +   I     
Sbjct: 365 AASAEEHQKVVELLKAAGLTNVWLVGEEF------LKTNTDFRKFKNVDEVKAEIAHHQP 418

Query: 443 DGDVVVVKSSNSCGFYRLINLL 464
           +   +++K SN    + L +LL
Sbjct: 419 ENHYILIKGSNGIRLFELPDLL 440


>gi|253581423|ref|ZP_04858649.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
 gi|251836787|gb|EES65321.1| UDP-N-acetylmuramyl pentapeptide synthase [Fusobacterium varium
           ATCC 27725]
          Length = 448

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 111/463 (23%), Positives = 194/463 (41%), Gaps = 36/463 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D  +     S+    +  +  + +DSR +   + FFAI     +G+++I   
Sbjct: 21  MKILFNILD--EIFGIKSVVETNE--IGHVVMDSRKVQKGDLFFAI----NNGNNYIEDV 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA LVV +     +       V  V++ + ++ KLA   R      IIAITGS GKT
Sbjct: 73  LNKGAALVVAD-----NYKGNDKRVIKVENTVESMQKLAQKYREALDIKIIAITGSNGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L++
Sbjct: 128 TTKDMMYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDSKYEVAVLELGMSGFGEIDLLSN 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I VIT I  +HL      E +  AK E+ + + K   I    DD F ++L     
Sbjct: 188 IAKPDIGVITNIGDSHLEFLKTRENVFKAKTELIKYITKENLII-FGDDPFLKILDGIKV 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G    Y      ++D                +  +    +      G H   N  M +
Sbjct: 247 GYGDNNNYQIKNFMDSD--------------KGLSFELDENKYEVALNGKHNCLNAAMAV 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 293 VIGKKMGIPYEEIKAGLKNLELTPMRFQKIE----KENIVYINDAYNASPISVSFSLETF 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++  + +  +I VLGDM E+GE    +H ++ +     +   ++L G  +    + +  
Sbjct: 349 DKL--YNDTLKIVVLGDMLELGENEIEYHKNILDKALNIHTDKIYLYGERMRKALEYIKE 406

Query: 421 S-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +   + +    + +   I         V++K S       +I 
Sbjct: 407 NREKITHFTEKEEIKKAILKEQRK-ISVLLKGSRGMKLEEIIE 448


>gi|310779644|ref|YP_003967977.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
 gi|309748967|gb|ADO83629.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ilyobacter polytropus
           DSM 2926]
          Length = 429

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/440 (24%), Positives = 181/440 (41%), Gaps = 28/440 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  + +DSR +     FFAIKG    G++ +  A++ GA LV+ +   +      +
Sbjct: 18  ESMDIKDVCMDSREVKKGSLFFAIKG----GNNHVEEAIKNGAVLVIYDRKDLLIQDENT 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
                 +D +  + KLA   R  ++  ++AITGS GKTTTK+++   LS   +T    G+
Sbjct: 74  ---IFTEDTVNFMQKLARDYRKSNQTKVVAITGSNGKTTTKDIIYSVLSQRFRTKKTQGN 130

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +NNHIG+P T+     + +  + E+GMS  GEI  L  +  P   +IT I  +HL     
Sbjct: 131 HNNHIGLPYTILNAQPEDEVLVLEMGMSDFGEIDLLCSIALPDYGIITNIGESHLEYLKN 190

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +  AK E+ E    +    +  DD + + +       G +  +   +    D     
Sbjct: 191 KENVFKAKGELLE-YVHSKNTIVFGDDYYLKDIHGIKVGYGDENTFKISEFIEND----- 244

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                       + +           G H   N    + +   +   +    K L     
Sbjct: 245 ---------KGAEFKLAGKTYRIPINGEHNVINASFAVVLGLEMGLSLSEIEKGLQGVEL 295

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R ++            I+++YNANP SMK AI    ++       +I VLGDM E+G
Sbjct: 296 TPMRFQKIEKGKK----LYINDAYNANPTSMKLAIETFDKLYNKRA-CKIIVLGDMLELG 350

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           E S+ +H ++   L      +++L G  +  L         V+Y E    L      S+ 
Sbjct: 351 EKSEEYHKNIKYYLKKSKAEYIFLYGKEMKNLWSVCQDDKRVYYFEDKI-LISKKIESIN 409

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
           +  V+++K S       +I 
Sbjct: 410 EKSVILLKGSRGMKLEEIIK 429


>gi|257791845|ref|YP_003182451.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
 gi|257475742|gb|ACV56062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Eggerthella lenta DSM
           2243]
          Length = 494

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/494 (22%), Positives = 199/494 (40%), Gaps = 40/494 (8%)

Query: 8   HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +     P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFMVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRP   ++  +  +H+      E IA AKAE+   L +         D  +     +   
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 242 LGIKTIYS-------------------------FGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L  + + +                             +    +  + +            
Sbjct: 246 LDARRVETVLFDGSAAAAERRAQADAAEAARPAVWAEQVELDEQGRPRFRLHAVGFADAP 305

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + ++        G H   N      +       +     AL+   P+ GR +  R     
Sbjct: 306 EEETARCALTLRGLHNVSNACAATAVGRACGIPLAVCADALAHAEPEAGRQEVLRARGG- 364

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             FT+++++YNANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  
Sbjct: 365 --FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFA 420

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +  +   G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S
Sbjct: 421 ATLPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKAS 480

Query: 453 NSCGFYRLINLLLE 466
           +  G  R++  L+ 
Sbjct: 481 HFMGLTRVVEGLVN 494


>gi|296140346|ref|YP_003647589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028480|gb|ADG79250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/506 (25%), Positives = 195/506 (38%), Gaps = 56/506 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   +   + G       PQ  V G +  DSR I   + F A+ G   DGHDF  
Sbjct: 1   MIEL-TLAQIADIVGGTLHDVPDPQATVTGTVEFDSREIGSGDLFLALPGARVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--------------DV-------LGALNK 97
            A++KGA  V+           + +P   V               D        L AL  
Sbjct: 60  TAIEKGAVAVLGARP-------VGVPAIVVPVSGETDNRVMALESDTDGAGAAVLTALGD 112

Query: 98  LAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           LA            T++ +TGS GKT+TK+++   L  + +T A  GS+NN IG P T  
Sbjct: 113 LAAYCTKSLAADGLTVVGVTGSAGKTSTKDLIAAVLRPLGETVAPPGSFNNEIGHPWTAL 172

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R      F + E+     G I  L  L  P I V   +  AHL  F   E IA AK E+ 
Sbjct: 173 RATASTKFLVLEMSARGEGHIAALAKLAPPRIGVELNVGTAHLGEFGSREAIARAKGELV 232

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L   G   LN DD+    + +++ A  +    +  + +  D  L        ++   +
Sbjct: 233 EALPVDGVAVLNADDAAVAAMASRTAARVVFYGTAEAQVRATDVVLDAHA----RAAFTL 288

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G +  V     G H   N L +  +     A      +ALS         +R     
Sbjct: 289 HTAGGTAPVALKVHGEHQVHNALASAAVGLECGATTAQVAEALSGAGA--ASPRRMDVFT 346

Query: 335 NQGFFTLIDESYNANPASMKAAI----------SVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G  T+++++YNANP +M+AA+              ++      R  AVLG+M E+GE 
Sbjct: 347 TDGGVTVVNDTYNANPDAMRAALRSLVLMSEHDEAGERLPGRDRRRTFAVLGEMGELGEE 406

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDAL----PRSIHVHYSETMDGLFLFIQ 438
           S   H  L   L   +I+     G      AL                 +T       ++
Sbjct: 407 SILEHDRLGRFLVRLDITSTICVGSSRAVHALWQGAVMEGSWGSEAIRVDTRAEAVERLR 466

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           + L  GD+V+VK+S S   + +   L
Sbjct: 467 AELRPGDLVLVKASKSEKMWEVAESL 492


>gi|163754139|ref|ZP_02161262.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
 gi|161326353|gb|EDP97679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2 [Kordia
           algicida OT-1]
          Length = 423

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 195/436 (44%), Gaps = 26/436 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ DSR I P   FFA+KG +++G+ +   A++KGA   +V+     +          V
Sbjct: 14  NITTDSRKITPNCIFFALKGDNFNGNKYAKDALEKGAAYAIVDEKEYVTSEQT----ILV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L +L KLA   R +    II++TGS GKTTTKE++   LS    T A  G+ NNHIG
Sbjct: 70  NDALESLQKLANYHRKQLNIPIISLTGSNGKTTTKELINAVLSKKFNTTATKGNLNNHIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  D + GI E+G +H  EI FL+ +  P    IT    AHL  F GIE +  
Sbjct: 130 VPLTLLSMNSDTEIGIVEMGANHKREIAFLSSIAEPDYGYITNFGKAHLEGFGGIEGVII 189

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+E+++ L+ +        D        +         Y FG S   D  +        
Sbjct: 190 GKSELYDYLKASDKFIFVNGDDT-----KQVERTQDANTYVFGGSDTYDLSIEFLTAN-- 242

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                V       ++    IG +   N+   + I +    + D   +A+  + P   R  
Sbjct: 243 ---PMVSCAVDGKKIQSQLIGSYNFSNIAAAIAIGTYFKVNSDDIKEAIEAYIPSNNRS- 298

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                L +    +I ++YNANP SMKAA+   S ++   +   IA LGDM E+G+ ++  
Sbjct: 299 ---QILTKNTNKIILDAYNANPTSMKAALDNFSDLTDTSK---IAFLGDMFELGDSAKEE 352

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + +  +   I  ++L G +          +  +    T + L     +   +   ++
Sbjct: 353 HQFINDYAASLEIEKIYLIGENFGITN---STNEKIVIHSTFESLKENFPAL--ENSTLL 407

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      R++ LL
Sbjct: 408 IKGSRGMALERILELL 423


>gi|84495978|ref|ZP_00994832.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
 gi|84382746|gb|EAP98627.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [Janibacter sp.
           HTCC2649]
          Length = 476

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 204/473 (43%), Gaps = 20/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF---VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L +  ++  A  G   G    G    V G +  DSR   P   + A  G   DGH F
Sbjct: 1   MIAL-SLAEIAVATGGTVHGAPTSGELPVVTGAVVTDSREAEPGSLYVARIGESMDGHQF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115
           +  A  KGA   + +  +        +P   VDDV  A   ++ A   R +  T+I ITG
Sbjct: 60  VGAARDKGAVAALTSRPVDE------LPCVVVDDVQAAFVAISRAVLERATDLTVIGITG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKT+TK++L   L +   T A +GSYN+ +GVPLT+ R+  D  F + E+G   +G I
Sbjct: 114 SSGKTSTKDLLGGVLGAAAPTIAPVGSYNSEVGVPLTVTRVTADTRFLVVEMGARGIGHI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT +  P I V+  +  AH+  F   E IA AKAE+ E L   G   LN DD     +
Sbjct: 174 NYLTRIAPPQIGVVLNVGTAHVGEFGSREAIARAKAELVEALPSDGVAVLNADDPVVRAM 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             ++ A  +    +   +  A+           ++   V        +    +G H   N
Sbjct: 234 ADRTSARVVLVGEAAEAAVRAEDVTVGSD---GRATFRVTTPAGGATIALRLVGRHHVGN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +       +DTA  +++          R          T+++++YNANP SM+A
Sbjct: 291 ALAVLAVALECGIPLDTATTSIAEAGIV--SRWRMEVTERPDGVTVVNDAYNANPDSMRA 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+S L  +      R  AVLG M E+G+ S + H ++        +  + + G     + 
Sbjct: 349 ALSALESM--GEGRRTWAVLGSMLELGDESDTDHAEVGAEAQQRGVDELLVVGETARPMA 406

Query: 416 DALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           D  P     + +    D     +++ +   DVV+ KSS   G   L + L  E
Sbjct: 407 DIRPVDGTRIRWVADADAAEALLRAEVAPPDVVLFKSSRDAGLRWLGDRLTAE 459


>gi|86132113|ref|ZP_01050709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
 gi|85817447|gb|EAQ38627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Dokdonia
           donghaensis MED134]
          Length = 424

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 183/437 (41%), Gaps = 28/437 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + +FA+KG +++G+ F   A++ GA L +V+     +  S       
Sbjct: 14  NGVCTDTRSLEKNQIYFALKGENFNGNKFAQQALKSGASLAIVDEKEYVTDRS-----VL 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II ITGS GKTTTKE++   LS      A  G+ NNHI
Sbjct: 69  VDDVLSTLQQLANYHRNYLDIPIIGITGSNGKTTTKELIYAVLSEQYNVIATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI+ L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLTMDASTEIGIVEMGANHQGEIKMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++  L +   +    D    ++ ++ +                 +      K   
Sbjct: 189 KGKSELYNYLRENNELVFINDQDEIQVRQSANIVSKTFGSSQSEYPVYLEDGSGNLKITV 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++ +   L G                     + +   +    D  +  +     K    
Sbjct: 249 GETTITSNLIGTYNFSN---------------IAVAMAMGNHFDVPLTHIKNGIEKYVPS 293

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +++  + +I ++YNANP SM AA+  L           IA +GDM E+GE S++
Sbjct: 294 NNRSQIIDKDTYKIILDAYNANPTSMAAALKNLQ----ATGTNAIAFIGDMFEVGETSKA 349

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + ++    NIS V+  G                    + D         +     V
Sbjct: 350 EHQAILDLAHNLNISKVYAIGPDFGT----SSPHPEQKVYGSYDAFAKAYSKQIPADTTV 405

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      R++++L
Sbjct: 406 LIKGSRGMKMERILDIL 422


>gi|186684309|ref|YP_001867505.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
 gi|186466761|gb|ACC82562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Nostoc
           punctiforme PCC 73102]
          Length = 451

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 130/468 (27%), Positives = 206/468 (44%), Gaps = 29/468 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQ--GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T   L++ +    I +       V+ GI  DSR++   E F A++G  +DGH F+  A+ 
Sbjct: 6   TLSQLVEVLLASPINLSETALTQVSCGIQTDSRTLKLGEVFVALRGDKFDGHKFVPTAIA 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA   +V+        +   PV  V D L A  ++    R R    +I +TGSVGKTTT
Sbjct: 66  KGAIAAIVD----FEYENPGFPVLRVKDTLKAYQQIGRWWRDRFNIPVIGVTGSVGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L +  + +   G+YNN IGVP TL  +  + D+ + E+ M   G+I  LT + 
Sbjct: 122 KELIAAVLGTKGQVHKTYGNYNNEIGVPKTLLELGAENDYAVIEMAMRGRGQIAELTQIA 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I VIT +  AH+      E IA AK E+   +       +N+D+       AK    
Sbjct: 182 RPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMAADSVAIINHDNPLLMATAAKVWHG 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T    G                 Q     Q++   +++     G H A N L  L +
Sbjct: 242 EVLTYGFSGGD------------IQGQLLDNDQMEVAGIQLPLPLPGRHNATNFLAALAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D       +      +    R +         ++DE+YNA P +M A++ +L+ 
Sbjct: 290 AKVLGIDWSNLKAGVE----VDMPTGRSQRFTLPNDVIILDETYNAAPEAMIASLQLLAD 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALKDALPR 420
                +   IAVLG M E+GE SQ  H  + E +   N+    V + G    A+      
Sbjct: 346 TPGKRK---IAVLGAMKELGERSQQLHQRVGETVRKLNLDGLLVLVDGEDAEAMA-LSAE 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            I      T   L   +++ +  GD ++ K+++S G  R++N L  EF
Sbjct: 402 GIPSECFATHAELVARLKTFVQTGDRLLFKAAHSVGLDRVVNQLRAEF 449


>gi|110637119|ref|YP_677326.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110279800|gb|ABG57986.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 426

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 125/437 (28%), Positives = 205/437 (46%), Gaps = 24/437 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ D+R +   + FFA+KGP+++G+ F   A++ GA  VVV+   V            
Sbjct: 14  RSVTTDTRKVKNGDLFFALKGPNFNGNTFAATALEMGAAYVVVDEAEVVQ----DDRYVL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      I+AITGS GKTTTKE++   +S   KTYA +G+ NNHI
Sbjct: 70  VDDVLTTLQQLANLHRRTLGIPILAITGSNGKTTTKELVNAVMSKKYKTYATVGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PLTL  M   ++FGI E+G +H  EI      V P+  +I  +  AHL  F G E + 
Sbjct: 130 GIPLTLLAMDESIEFGIVEMGANHQKEIASYCSFVEPNYGLINNVGKAHLEGFGGFEGVK 189

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L          + +    + +K+  L   + +        +      K   
Sbjct: 190 KGKGELYQYLF---------ETNGIAFINSKNEHLMEMSPFEAPVLYGRNSDFYNAKFLK 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              ++      + + V    +G +   N+L  L I          A +A+  + P   R 
Sbjct: 241 SDPFVAFIAGNEEL-VETKLVGDYNFDNILAALCIGKYFGVPSIAANQAIEQYDPTNNRS 299

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N+    +I +SYNANP SM+AAI   + +    +   + +LGDM E+GE S+ 
Sbjct: 300 QIVKTEKNE----VILDSYNANPTSMRAAIENFASLQKENK---VVILGDMYELGEESEV 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H ++  +L+L   + + L G ++ A            Y +T +    F+ S+ +    +
Sbjct: 353 EHANIGALLNLLTDTKIILIGKNMAAASK---ECTAAAYMDTKEAAVNFLVSNQILNSTI 409

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S   G   L+ LL
Sbjct: 410 LLKGSRGMGLESLMPLL 426


>gi|262377041|ref|ZP_06070267.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
 gi|262308079|gb|EEY89216.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Acinetobacter lwoffii SH145]
          Length = 467

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/473 (26%), Positives = 203/473 (42%), Gaps = 30/473 (6%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W+   L QA QG+ +    P G +  I  DSR     +AF A+KG  +D HDFI     +
Sbjct: 14  WSIEQLQQATQGYWLNDKKPAGQIKRILTDSRDAEAGDAFLALKGERFDAHDFIAQVAAQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V+  + A      I    V+D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCEIAIVSRPVDA-----DICQLVVEDTRLALGQLGAYRRQQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + + +V
Sbjct: 129 KEMLGSILSRLAPTLVTRGNLNNDLGVPVMLLELRPEHQYAVMELGASHQGEIDYTSKMV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +PH+A I  I  AHL  F G + I  AK+EI+  +    T  +   D F E+++A     
Sbjct: 189 QPHVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIS--ETSIIPAADDFAEVIRAAVRTE 246

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  + G+   +D         ++ S   +     S  V     G H  +N       
Sbjct: 247 KSLSFGAGGEVYASDVV-----LEAQSSSFTLNTPQGSKTVQLPFAGEHNVENATAAAAF 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L      +GR       +    +  ID++YNANP SM       ++
Sbjct: 302 ALAIGIGLDDIVAGLEQAVGAKGRLNF----IPHKDYLFIDDTYNANPGSM----RAAAE 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDALPR- 420
           +    +G R+ V GD+ E+G  +   H  L   ++S+  I+ V   G    A ++     
Sbjct: 354 VLAQQQGIRVMVTGDIGELGSSAAIEHYKLGRDLVSVKGINFVVAVGEFAPAAQEGARST 413

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
                +      +    F+   +          + K S       L+  L+E+
Sbjct: 414 QYGKKMQAFLNQEQALPFLIRLIETHQPQPMSFLFKGSRFTHMETLMAALMEK 466


>gi|119511818|ref|ZP_01630919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
 gi|119463530|gb|EAW44466.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nodularia
           spumigena CCY9414]
          Length = 450

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 210/473 (44%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ--GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    +   LL+ +    I +       V+  I  D+R I P E F A++G ++DGHDF+
Sbjct: 1   MPWSVSISQLLEVLCAQPINLSEAALTQVSSTIQTDTRRIKPGEVFLALRGENFDGHDFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            HA+ +GA   +V++D      +  + V  V D L A  +L    R R    +I +TGSV
Sbjct: 61  SHAIAQGAIAAIVDSDY----ENADVAVLQVRDTLQAYQQLGRWWRDRLNIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L++  + +   G++NN IGVP TL  +  + D+ + E+ M   G+IR 
Sbjct: 117 GKTTTKELIAAVLATEGRVHKTFGNFNNEIGVPKTLLELDTEHDYAVVEMAMRGEGQIRE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT + RP+I VIT +  AH+      E IA AK E+   + +     LN+D+        
Sbjct: 177 LTQIARPNIGVITNVGTAHIELLGSEEAIARAKCELLAEMPEDSVAILNHDNPLLMATAQ 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +  + T    G                        ++   M +     G H A N L
Sbjct: 237 QVWSGEVVTYGLSGGD------------IQGVLTDNQTIKVGEMRLPLPLPGRHNASNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D  T    +           R +         L+DE+YNA P +M AA+
Sbjct: 285 AALAVAQVLGIDWSTLQNGVK----VNMPTGRSQRFTLPHDIILLDETYNAAPEAMTAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+      +   IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSLQLHQRVGETVQRLQLDGLLVLVDGKDAQAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   +++ +  GD ++ K+++S G  R++N    EF
Sbjct: 398 QSA-EGIPSECFTTHADLVARLKTFVQAGDRILFKAAHSVGLDRVVNQFRAEF 449


>gi|167753175|ref|ZP_02425302.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
 gi|167659489|gb|EDS03619.1| hypothetical protein ALIPUT_01446 [Alistipes putredinis DSM 17216]
          Length = 447

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 126/438 (28%), Positives = 194/438 (44%), Gaps = 35/438 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI-PVFGV 88
           IS DSR I P   FFA++G  +DG+ F   A++KGA   VV+   + +        +  V
Sbjct: 42  ISTDSRRIEPDSVFFALRGASFDGNRFAADALEKGAAYAVVDDPSLPNTRPDKADRLIVV 101

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  L  LA   R      I+AITGS GKTTTKE+++  L+   + YA  G+ NNHIG
Sbjct: 102 DDALQTLQALAREHRRELGLPILAITGSNGKTTTKELVSRVLAEKYEVYATRGNLNNHIG 161

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  M  DV+FGI E+G S  GEI  L  +  P+  ++T I  AHL  F G E +  
Sbjct: 162 VPLTLLAMTRDVEFGIVEMGASACGEIALLCSIAEPNYGIVTNIGRAHLEGFGGPEGVRR 221

Query: 209 AKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            K E+++ L +T G +F+  +D     + A+   L  +   +             + + +
Sbjct: 222 GKGELYDWLARTGGRVFVPANDPVLMSMAAERETLAAECYPTTLADGVEHHLEGDYNRFN 281

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                                           +     +        + +          
Sbjct: 282 --------------------------------VAAAVAVGRYFGVDDERIRYAVGSYRPD 309

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +  G  TLI + YNANP+SM+A++    Q    G  R+I +LGDM E+G+ S +
Sbjct: 310 NHRSQKIRTGQNTLILDCYNANPSSMQASLVNFRQEPLEGCTRKILILGDMLELGDWSDA 369

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            H  +  + +    + + L G H      +L  R        + + L   ++   V   +
Sbjct: 370 EHRHIISLAAEIPDARILLVGPHFAKAYRSLESRPADTTLYPSQEVLAAELRKHPVSQAL 429

Query: 447 VVVKSSNSCGFYRLINLL 464
           ++VK S+S G  RL +LL
Sbjct: 430 ILVKGSHSIGLERLADLL 447


>gi|315607153|ref|ZP_07882157.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
 gi|315251207|gb|EFU31192.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccae ATCC 33574]
          Length = 439

 Score =  222 bits (564), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 119/439 (27%), Positives = 186/439 (42%), Gaps = 19/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       FFA+KG  +DG+ F   A++KG    V++    A  G+    +  VD
Sbjct: 16  ITTDSRDCPEGSIFFALKGESFDGNRFAKAALEKGCAYAVIDEREFAEEGNG--RLILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL    +LA   R R    +I ITG+ GKTTTKE++   L          G++NN +GV
Sbjct: 74  NVLTTFKELAREHRRRFDIPVIGITGTNGKTTTKELIAAVLGEKYNVMYTRGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFSLRPEHEIAVVEMGASHPGDIKALVDYVEPTCGLITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ LE    +    + +   +  A     G    Y   +  N + ++         
Sbjct: 194 KGELYDFLESHDGLLFLNESNPDLMEMAAQRNFGRIISYGRDEGGNVEGEVIDCSPFLNF 253

Query: 270 SWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            W +          + EV  H IG +   NML  + +             AL  + P   
Sbjct: 254 RWRQHLHAGQIPANAYEVETHLIGAYNLDNMLAAIAVGLHFGVSPAQINHALGHYIPSNN 313

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R              LI ++YNANP+SM AAI     +    +   +A+LGDM E+G +S
Sbjct: 314 RS----QLETTEHNRLIVDAYNANPSSMAAAIDNFKLMKAERK---MAILGDMLELGAVS 366

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              H    + L+   I  VWL G        A  +       + +D +   I +   +  
Sbjct: 367 DEEHQKTVDALAAAGIKEVWLVGEEFGKTHTAFRK------FKNVDEVKAAIAAHRPENY 420

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K SN     +L  LL
Sbjct: 421 YILIKGSNGIHLSQLPELL 439


>gi|290891222|ref|ZP_06554284.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
 gi|290479186|gb|EFD87848.1| hypothetical protein AWRIB429_1674 [Oenococcus oeni AWRIB429]
          Length = 461

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 129/480 (26%), Positives = 212/480 (44%), Gaps = 40/480 (8%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DGH FI  A++ GA     +      I   S+P+  V D   AL  LA     +
Sbjct: 63  YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +  + 
Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+GM HLG++  L+ ++ P+IA+IT I  AH+  F   ++IA AK EI +GL+K GT   
Sbjct: 178 EMGMDHLGQLTALSKMLEPNIALITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + D    E+L  +   L      +FG+ ++ +F + + +     S+     +        
Sbjct: 238 DGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSF-----KVNQETYSV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G   A N    + +         T  +        +    R +        T+I + 
Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDN---LQITKNRLQLLTGSKGETIISDV 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN+NP +   AI +L       +G++I VLGDM E+G+   S H+ L   +       V+
Sbjct: 346 YNSNPTAAIKAIEILKDFP--TQGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L G  + +L   +    +      +  L   +QSSL   DVV++K+S+     ++   L+
Sbjct: 404 LVGPIMKSLAVKMQARWYDKAF--LTDLSRDLQSSLSKNDVVLLKASHGIHLEKVEQALI 461


>gi|219849712|ref|YP_002464145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
 gi|219543971|gb|ACL25709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Chloroflexus
           aggregans DSM 9485]
          Length = 487

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 205/498 (41%), Gaps = 48/498 (9%)

Query: 4   LWTFHDLLQAIQGH----SIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    +LL A+Q       + I P      +  + +DSR + P   F A+ G   DGH +
Sbjct: 1   MIRLDNLLYAVQPRATRQVVHIPPSWVDRQIGPVVVDSREVTPGSLFVALTGERTDGHLY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASI-------------------------GSLSIPVFGVDDV 91
           +   V++GA   +V+   +A++                            +     VDD 
Sbjct: 61  LPDVVERGAAAALVSPAKLAALAPDWSAVARPWRLIEPSDGSALATVPPEACLFIAVDDP 120

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L AL + AV  R     T+I ITGSVGKT+TKE++   +S   +T     S+N+ I +P 
Sbjct: 121 LCALQRAAVYHRRMFTPTVIGITGSVGKTSTKEVVAAVISQRLRTLKSQRSFNSDITLPA 180

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  +  D    + E+GM   GEIRFL  L RPHI ++T + P+HL     IE IA+AKA
Sbjct: 181 TLLGLTADHQVAVLEMGMWAAGEIRFLAALARPHIGIVTNVGPSHLERLGSIEAIANAKA 240

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ E L   G   LN DD     +  ++ A     + ++G + +AD +  +         
Sbjct: 241 ELPESLPPDGWCILNADDPRVAAMAKRTPA----HVVTYGFAPHADVRAVEVISHGLYGI 296

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                       +   +         +     +++      AI A            R R
Sbjct: 297 ELTVSYQGEQHHLQTPLIGRHHAYTTLAAIAAALVVGLDWEAIAAGLRDPG---ERLRLR 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q   T+ID++YNA P S  AA+ VL+       GRRIAVLG+M E+G  ++  H  
Sbjct: 354 VVNGQQGVTIIDDTYNAAPLSTIAALEVLA----ETPGRRIAVLGEMLELGSATEEGHRQ 409

Query: 392 LAEVLSLYNISHVWLSGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +    +      +   G        A + A      V      D     ++S +  GD +
Sbjct: 410 VGAAAART-ADLLVAVGRQAQTVAAAARAAGMAEAQVIVCADNDAAIDRLRSLIQAGDCL 468

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK S       ++  L 
Sbjct: 469 LVKGSRGVQMETIVTALQ 486


>gi|148284401|ref|YP_001248491.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
 gi|146739840|emb|CAM79764.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 471

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/468 (27%), Positives = 231/468 (49%), Gaps = 14/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
           +W+  DL  A+       V    +  +  +S+ I P + F A++  +  DGH F+  A+ 
Sbjct: 5   IWSAADLTAALGVPVNVNVNVNGI--VQFNSKDIQPGDLFIALQSENGGDGHQFVNDALA 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTT 121
           +GA  V+V+  +     + +  +  V++ + AL++LA   R +    T I ITGSVGKT+
Sbjct: 63  RGADAVIVSKLID---NNANDKIILVNNTMSALSQLANYRRQQLKNTTFIGITGSVGKTS 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE++    S+  KT+A   ++NN +G+ L LA +P++ ++ IFEL  S  G ++ L  +
Sbjct: 120 TKEIMFKVFSTYYKTFASRKNFNNLLGMLLNLASVPINTEYAIFELSTSSPGGLQKLVKI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  +IAV+T I  AH   F+ +E +  AK EIF GL   G   +N D  F+       + 
Sbjct: 180 LPLNIAVLTNINSAHTEFFNSLEHLTEAKCEIFNGLVNKGIAVINSDSMFYTKQLEYINK 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           LGI  +++FG  + A+  +  +   ++     + +     +   +       Q   +   
Sbjct: 240 LGINNVFTFGTHQEANSNITNYYYDADNQKSVINISCNGYDWQFNTQILGYGQAFNIAAV 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT--LIDESYNANPASMKAAISV 359
           ++      ++       +   +   G+     LN    +  +ID+ YNANPASMK A+ +
Sbjct: 300 MLVSNICKINLNKVTEVINTLRNYEGRGKIYLLNFHSNSSFIIDDCYNANPASMKNALDL 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L QI    +   +A+LGDM E+G  ++  H++L   +  YNI HV   G  +  + + LP
Sbjct: 360 LGQIKAKRK---VAILGDMLELGNNTKEHHLNLVTYIKKYNI-HVIAIGSLMKNVYELLP 415

Query: 420 RSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + + +   ++ L    +   L D D V++K SN    +++I  LLE
Sbjct: 416 AELKLSHYNNINELPVDQLLPLLHDKDYVLIKGSNRMRLWQVIENLLE 463


>gi|53711742|ref|YP_097734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
 gi|52214607|dbj|BAD47200.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           fragilis YCH46]
          Length = 432

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 184/435 (42%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +     +        L+        I          N            E 
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFE- 252

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    G   +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 253 --WKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    TLI ++YNANP SM AA+     ++   +   + +LGDM E+G  S + H
Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVEKK---MLILGDMRELGTESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   +   V L G    A           H       +   +Q+       +++
Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      ++  L
Sbjct: 418 KGSNGIKLNTVVEFL 432


>gi|227533027|ref|ZP_03963076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227189428|gb|EEI69495.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 462

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPVAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+     L  +    
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +        ++   +   I      N++  L  
Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +                  +    R +  +      ++ + YNANP +MKA I   S+
Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL DAL    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHASLAEALDPKEVQVVYLYGSDMKALADALAAKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H +  +  + +   +Q+ +   D+V++K+S+      +++ L+ 
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458


>gi|291301482|ref|YP_003512760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570702|gb|ADD43667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 463

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 205/470 (43%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + +  ++ +A+ G       P+  V G +  DSR I P   F A  G H DGHDF  
Sbjct: 1   MIAM-SLAEIAEAVGGRLSDTANPETRVTGPVEHDSRKIEPGSLFVAFTGEHADGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSV 117
                    V            +  P   VDDV  A  KLA A   R     II +TGS 
Sbjct: 60  -------AAVADGAVAALVSREVDAPSILVDDVQLAFGKLARAVVDRLPELKIIGVTGSA 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++     ++  T A  G+ NN IG+P T+ ++     + + E     +G I +
Sbjct: 113 GKTSTKDVMAELCRALGPTVAPEGTLNNEIGLPYTVLKVDETTRYLVLEYSARGIGHIDY 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P IAV+  +  AH+  F  ++ IA AK E+ E +   G + LN DD+       
Sbjct: 173 LCGIAPPGIAVVINVGTAHMGEFGTVDGIARAKGELAEAVAPGGVVILNADDARVAA--- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    + +FG++++AD +       + Q    +     S  V     G H   N L
Sbjct: 230 -MRDRARARVVTFGEAESADIRATDVVSEAGQPRFTLHTPNGSAPVALKLYGAHHVSNTL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   +     A  V  P     +R          T+ID+SYNANP+SM AAI
Sbjct: 289 AAAAVAVELG--MAAEAIASVVSGPLSLSPRRMDVFTRADGTTVIDDSYNANPSSMAAAI 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L+ +    E R+IAVLG M E+G+ +++ H+ + E+ +  +I  V        A+ + 
Sbjct: 347 NALADL--GKESRKIAVLGYMAELGDETEAAHLQVGELAARNDIDIVISVEEVAAAIAEG 404

Query: 418 LPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +  + Y  +        +   L  GDVV+VK S     +++ + L E
Sbjct: 405 AGLAGSIAYGVDDQAEAIAKLDELLDVGDVVLVKGSR-YRTWKVADYLRE 453


>gi|254449024|ref|ZP_05062478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
 gi|198261418|gb|EDY85709.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium HTCC5015]
          Length = 452

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 136/464 (29%), Positives = 211/464 (45%), Gaps = 21/464 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + + ++G   G      V G  ID+R++   + FFA+ G   DGH+F+  A + GA 
Sbjct: 6   LSQITRVLRGEWHGD--DCHVKGACIDTRALQKGQLFFALSGTQRDGHEFVAQAAEAGAS 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEM 125
             VV       +  + +P   V D   AL  LA   R +      +A+TGS GKTT KEM
Sbjct: 64  AAVVER----YLEDVDLPQCVVSDARLALGHLAAWWRAQLNETRFVALTGSNGKTTVKEM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS++  T A  G++NN +G+PLTL R+  +  F + E+G S  GEI +LT + +P 
Sbjct: 120 LKQILSAVGSTCATQGNFNNDLGLPLTLLRVGREHQFAVLEMGASQFGEIEYLTQVAKPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++    PAHL  F  I  +A  K EI+ GL + G   +N DD   +  ++        
Sbjct: 180 VALVNNAGPAHLDGFKDISGVARGKGEIYNGLGEKGIAIINADDIHADYWRSLCADK--- 236

Query: 246 TIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           T+ SFG   +AD   Q     +         +L   S+ +     G H A+N +    + 
Sbjct: 237 TVVSFGLENSADVQGQWSSQTKTLNLQVGGDKLDSGSVLIKLPLSGRHNARNAVAAAAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+D   K LS   P  GR              LID++YNANPAS+ A I V   +
Sbjct: 297 LAAGVDLDAVEKGLSKVRPVAGRMVPMTARGGFY---LIDDTYNANPASLMAGIDVALDM 353

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +      LGD+ E+G+ S++ H  L E +    +  ++  G       +       
Sbjct: 354 ----QRPVWLALGDLAELGDNSETVHAQLGEQVQQRGVQRLFTLGEQSKNAAERFGEGAA 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++ + L   I++      V++VK S S    R++ LL EE
Sbjct: 410 A--FDSPEALAQQIETLATRDVVLLVKGSRSSRMERVVRLLSEE 451


>gi|88856508|ref|ZP_01131165.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
 gi|88814162|gb|EAR24027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-alanyl ligase [marine
           actinobacterium PHSC20C1]
          Length = 467

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 123/475 (25%), Positives = 212/475 (44%), Gaps = 24/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L +  ++  AI G  +       +     +  DSR       FFA++G   DGH F 
Sbjct: 1   MIEL-SIAEIAAAIGGELVDGTDGKRRLPPVAVQTDSRLSTAGSIFFALRGETTDGHLFA 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAI 113
             AV+ GA L+V    +      + +    V+D + AL  LA       R   +  ++A+
Sbjct: 60  HTAVENGATLIVAERAL-----DIDVAQIIVNDGVTALQALARAVVARVRENGQLKVLAV 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK ML   L    +T A  GS+NN +G P+T+  +     + + E+G   +G
Sbjct: 115 TGSNGKTTTKNMLRTILEREGETVAPKGSFNNDVGAPITMLGVTNSSKYLVVEMGADGIG 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +I  L  +V P + ++  +  AH+  F      A AK+E+   L    T  LNYDD    
Sbjct: 175 DITRLQSIVMPDVGIVLMVGLAHIGKFGDAATTALAKSEMVTALPPQSTAVLNYDDGRVR 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  ++ A    T+  FG   ++D    + +  +  +  ++ +  + + V    +G H  
Sbjct: 235 AMAPQTEA----TVNFFGLDSHSDVWADEIEASARGTAFDLHVADEVVPVQLRILGEHHV 290

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +   +     +     A+++         R       G  T+I+++YNA+P SM
Sbjct: 291 TNALAAIT--AARALGIPVQRSAVALESIDRAERWRMELLEAPGGITVINDAYNASPDSM 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AA+  L Q+    E R +AVLG++ E+GE +   H  +  ++   N+  + + G     
Sbjct: 349 AAALKTLVQV-VGPENRSVAVLGEIAELGEYANEEHDRIGRLIVRLNVQKLIVVGHAARH 407

Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + +A              + ++  +  ++  L  GDVV+VKSSNS G   L + +
Sbjct: 408 IHNAAGLEGSWDGESVLVDNVEEAYAVLREELRGGDVVLVKSSNSAGLRHLGDRI 462


>gi|323341781|ref|ZP_08082014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464206|gb|EFY09399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 440

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 118/466 (25%), Positives = 206/466 (44%), Gaps = 27/466 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +   ++G  +G      V G+ +DSR++   + F  +KG   DGHD+I   
Sbjct: 1   MKDLKT-DIIANWVKGSVLG---STQVQGVKVDSRAVEAGDLFVCLKGARVDGHDYIEDV 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+      I +L +    VDD + AL   A A R    AT I ITGS GKT
Sbjct: 57  IGKGAVAVLVDHK----IDNLDVCQIIVDDTMAALQLFAKAYRDTLNATFIGITGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK++L   LS +  + A   + N  IG  L L RM  D +FGIFE+G+ ++G++  +  
Sbjct: 113 STKDILFSILSRVGNSIATYKNQNTEIGTYLNLFRMNDDTEFGIFEMGLDYVGDVAVMAE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +RP   ++ ++APAH+ NF  IE IAS K  IF+ +      F   D   +  +     
Sbjct: 173 CIRPDAGLVMSLAPAHMMNFDSIEHIASEKMRIFDFVTHKDLSFYQGDFEQYRSI----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  ++FG +++ ++ +      +             ++ V +              
Sbjct: 228 ---SHGEHTFGFNEDNEWVVSDVSSNNHGIS-------FKLDGVAYSSNLLGNHQASNCA 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G++++L+             +       R       G   ++ ++Y +NP S K A+ +L
Sbjct: 278 GVIALLSKLGIDDAVIREGLNHVALTSLRTELVEK-GNALVLLDAYKSNPISAKYALDLL 336

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LALKDALP 419
           +      +G R+A+L DM E+G  S   H+++ + +   NI      G     AL D+  
Sbjct: 337 AHY--EYDGDRVAILSDMVELGPESHKAHLEVLDCIQDLNIKMAHTLGPEFKKALSDSRL 394

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +      +T +     +     +  ++++K S S    RL+  + 
Sbjct: 395 DASRFTNDDTFEAFVERVTPCFDEHAMILIKGSRSYQLERLMEEVK 440


>gi|192361367|ref|YP_001983389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
 gi|190687532|gb|ACE85210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Cellvibrio
           japonicus Ueda107]
          Length = 463

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 127/443 (28%), Positives = 203/443 (45%), Gaps = 16/443 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 +S D+R++   + F A++G  +D HDF+  A  +    +VV         ++ +
Sbjct: 31  DAMFTRVSTDTRTLDAGDLFIALRGERFDAHDFLAQAEARQPCAMVVEK----FNPAIQL 86

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   V D   AL ++A   R      ++AITGS GKTT K ++   L    +T A  G+ 
Sbjct: 87  PQLVVADSTLALGQVAALNRSLFTGPLVAITGSSGKTTVKTLVASILGECGETLATRGNL 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIGVPLTL  +     F + E+G S   EI +   L +P +A+I  + PAH+  F  I
Sbjct: 147 NNHIGVPLTLLELEERHQFAVIEMGASGPSEIAYACSLAKPQVAMINNVMPAHIEGFGSI 206

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             +A+AK+EI+ GL   G   +N DD+F      +       T+     + +A+ +    
Sbjct: 207 AGVANAKSEIYGGLVTGGIAVVNIDDAFAPQWIQQLAGKKTLTV--SLANPDANCRAEAI 264

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  SE    ++ +  + + ++ +  G H  +N LM       L A ++   + L+ F P 
Sbjct: 265 EYASEHLAFDLLIHRQRLRIILNAQGEHSVRNALMAAACAYALGASMEQIQRGLARFAPV 324

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR  R R   N     +ID+SYNANP S++AAI VL+Q         I VLGD+ E+GE
Sbjct: 325 AGRMSRQRGIHN---ALIIDDSYNANPGSVRAAIDVLAQAEDS-----ILVLGDLAELGE 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +   H  L +     +I+ ++  G                 +    + L   +   L  
Sbjct: 377 TATEQHAALGDYAKQKHINRLFTLGVLTANTSSHFGEG--AQHFTERNQLLAALIPLLTS 434

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           G  V+VK S S     ++  L E
Sbjct: 435 GTTVLVKGSRSSKMDLVVRELCE 457


>gi|88704096|ref|ZP_01101811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
 gi|88701923|gb|EAQ99027.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Congregibacter litoralis KT71]
          Length = 458

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 208/466 (44%), Gaps = 17/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L +   + + +     G      V+GI+IDSR++ P + F A+ G   DGH++I  A
Sbjct: 2   MSAL-SLSVIAERLGAPYEGAP--LAVSGITIDSRAVTPGDLFVALPGERVDGHNYIDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA   +V   + A      +P   V   L AL+ +  A+R  S++ +IAITGS GKT
Sbjct: 59  VANGAIAALVEHPVDA-----DVPCLRVSSCLAALSDIGRASRDFSRSLVIAITGSCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K +     +    T A  G+YNN IGVPLTLAR+  +  F I E+G +  G+I  L  
Sbjct: 114 TVKNLCRSIFTQAGPTVATAGNYNNEIGVPLTLARLDDETRFAIVEMGATRRGDIAHLCA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RP I  +     AHL  F  + ++A  KAEIF+GL   GT  LN D  +  L + +  
Sbjct: 174 LARPSITTVLNAMEAHLEGFGSVADVADIKAEIFDGLGAQGTAILNLDQPWVSLWRERIA 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G  T+      +             + S   +++ G+   V     G H   N L   
Sbjct: 234 RAGADTVSYSLGEEGDITVADLRDLGLQGSEFTLRVHGEEQAVRFPLPGRHSVANALAAA 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +    D+ T +  L           R R        TLID+SYNANP S++AAI +L
Sbjct: 294 ALATAAGLDLGTIVTGLEQAE---AESGRLRAESLGEDKTLIDDSYNANPGSVRAAIDLL 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +  +    G  + +LG+M E+GE S   H ++        ++     G  +    +    
Sbjct: 351 AATA----GNSLLILGEMLELGEESAERHREMGARAREQGVTRFVGIGDALKPAVETFGS 406

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    +  T D L   +   L   D ++VK S       ++  + +
Sbjct: 407 T--GQWYPTRDALTAALPELLEQSDTLLVKGSRGAAMESVLVAIRD 450


>gi|42526709|ref|NP_971807.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
 gi|41817024|gb|AAS11718.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score =  221 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 119/477 (24%), Positives = 196/477 (41%), Gaps = 31/477 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L    +LL +     +         + + +DSR++     F  ++G + DGH +I  A++
Sbjct: 14  LMNLDELLTSTGAWLVYESNSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73

Query: 63  KGAGLVVVNTDMVASI--------GSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113
            GA   VV+ D +            +       V + L AL   A     +      I I
Sbjct: 74  NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L    S    T +  G+ N+  G+PL++  +  + + GIFELGM+  G
Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  ++ P+ A+IT I  AH+      + IA  K EIF   +     F+     F +
Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFKDDSLGFIPE-CEFTD 252

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            LK   H               +D      ++  +   +  ++  K  E++    G +  
Sbjct: 253 FLKDIPHG---------SVFTVSDNDSSLVQKVEDAGVLGSKIFYKGEEILFPLPGVYNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L+ + +              L    P  G     R  +  GF T   + YNANP SM
Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFG-----RSQVLHGFVTYFLDCYNANPDSM 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K+AI     I+         VL  M E+G  S   H  + E     N  +++  G  + +
Sbjct: 359 KSAIEFCDSINTECAKHY--VLASMLELGAESDYEHKKIIEDALKSNADNLYFFGDDICS 416

Query: 414 LKDAL--PRSIHVHYSET--MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +    S  ++  +T   D L   ++ +L   D V++K S S    RL ++L E
Sbjct: 417 AFEGMNVSSSKKIYKFKTNQFDALKEQLKENLSKDDFVLLKGSRSMELERLESVLKE 473


>gi|191639474|ref|YP_001988640.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239630392|ref|ZP_04673423.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301067545|ref|YP_003789568.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|190713776|emb|CAQ67782.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus casei BL23]
 gi|239526675|gb|EEQ65676.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300439952|gb|ADK19718.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|327383569|gb|AEA55045.1| MurF [Lactobacillus casei LC2W]
 gi|327386761|gb|AEA58235.1| MurF [Lactobacillus casei BD-II]
          Length = 462

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +        V G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSEADGSHVVTGLAFDSRKLKPGMLFVPLRGER-DGHEFIPAAATA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +     L      V D L A+ +LA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAADHLPVTTKLIT--LVVPDPLKAMQQLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSTLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F   ++IA AK EI +GL+  GT   N D+     L  +    
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRDKIADAKMEITDGLKDDGTFIFNGDEP----LLQERAKK 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +   +FG                  +        ++   +   I      N++  L  
Sbjct: 236 ITQERETFGLHPENTIFAHSISGHRNHTEFT----VEAWPDLTFSIPIMGEYNVVNALAA 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +                  +    R +  +      ++ + YNANP +MKA I   S+
Sbjct: 292 LLVGRKFHVKPEIMQKALAHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
            +    GR IAVLGDM E+GE S + H  LAE L    +  V+L G  + AL DAL    
Sbjct: 352 FTA--TGRHIAVLGDMLELGEQSPALHAGLAEALDPKEVQVVYLYGSDMKALADALAAKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H +  +  + +   +Q+ +   D+V++K+S+      +++ L+ 
Sbjct: 410 PADQLHYYPLDDKEQMTRDLQNDVNHDDMVLLKASHGLHLETVLSALVA 458


>gi|298373389|ref|ZP_06983378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274441|gb|EFI15993.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 434

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 20/438 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+IDSR   P+  FFA+KG + DG+ F   A+Q GA   V++   VA+          V
Sbjct: 16  NITIDSRCCPPESLFFALKGKNNDGNRFAEKALQNGAEYAVIDDPDVAA----DDRYIVV 71

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL A+ +LA   R + KA IIA+TG+ GKTTTKE++   L+   K      ++NNHIG
Sbjct: 72  PDVLTAMQQLAAYHRRQMKARIIAVTGTNGKTTTKELIATVLAKQYKVLYTERNHNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  +  FG+ E+G +H GEI  L  + +P   +IT    AHL  F   E +  
Sbjct: 132 VPLTLLRLTEEDQFGVIEMGANHKGEIASLCDIAQPDFGIITNFGRAHLEGFGSFEGVIE 191

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+F+ L +          +    +  K+  +G  +        +    +     C  
Sbjct: 192 AKTELFDYLREHKGRVFINIGN--SNIVEKAKGIGNISYGINNDKADVSGYITGQNPCIS 249

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            SW   +    +  V  H +G +  +N+L  + +      + +   +AL  + P+  R +
Sbjct: 250 VSWASQRFFVVAQSVKTHLVGGYNLENLLAAVVVGLFFEVEPNDINEALCGYIPENHRSQ 309

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N     LI ++YNANP+SM AA+   + +       ++ +LGDM EMG+ +   
Sbjct: 310 YMKTDRND----LIIDAYNANPSSMAAALRNFNSLPYP---HKMVILGDMLEMGDTAVED 362

Query: 389 HIDLAEVL-SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H ++  ++ +  +I  V L G    ++              T+D L  +++++      V
Sbjct: 363 HEEIVNIIRNQLSIDEVLLVGEIFASIDSGYKT------FVTVDDLSAYLEANPPKDTAV 416

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K SN  G  R+I  L 
Sbjct: 417 LLKGSNGIGLERIIAYLK 434


>gi|254462013|ref|ZP_05075429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206678602|gb|EDZ43089.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 485

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 176/476 (36%), Positives = 256/476 (53%), Gaps = 19/476 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW   D  +A  G ++G      V+GISID+RSI   + F A+K    DGH+F+  A
Sbjct: 1   MT-LWIAPDAAKATGGKAVG---DWSVSGISIDTRSIEVGDLFVALKAAR-DGHEFVAQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGAG  +V    V    +   P+  V+DVL AL  L  A R R++A ++AITGSVGKT
Sbjct: 56  LAKGAGAALVTH--VPEGVAKDAPLLVVEDVLSALEDLGRAGRARTEARVVAITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   LS+  +T+A + SYNNH GVPLTLARMP D +F + E+GM+H GEI  L  
Sbjct: 114 STKEMLRDVLSAQGRTHASVASYNNHWGVPLTLARMPQDTEFAVIEIGMNHPGEIAPLAK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RPH+++ITT+A AHL  F  I+ IA+ KA I  GLE  G   LN D     +LK+K+ 
Sbjct: 174 MARPHVSLITTVAAAHLEAFDNIDGIAAEKAAIMNGLEPDGVAILNADIETAHVLKSKAE 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ I  ++    +   ++ L         + +E  + G  +       G H A N L  L
Sbjct: 234 AMHINAVWF--GASADEYCLETCVLRGNTTVVEANILGTPLLFKIQSAGQHFAMNGLGAL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL----IDESYNANPASMKAA 356
                L AD+  A ++++ + P  GRG R   AL+     +    ID++YNANP S+ AA
Sbjct: 292 ASAEALGADLALAAQSIAKWVPFTGRGAREVIALDPADSRMTLELIDDAYNANPTSLSAA 351

Query: 357 ------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   V   I    +GRRIA LGDM E+G+   + H  +A +  + ++  +   G  
Sbjct: 352 LDVLAAAEVTHDIGRVSKGRRIAYLGDMKELGDDENAMHEAVARLSCIEHLDMIHCVGPL 411

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +    +ALP +   H+ ET   +   +   L  GDVV+ K S S G  R+++ + +
Sbjct: 412 MRGCYEALPDAKRGHWFETSAEMASTVGRDLDAGDVVLAKGSLSMGLARVVDAVRK 467


>gi|310823492|ref|YP_003955850.1| UDP-n-acetylmuramoyl-tripeptide--d-alanyl-d-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|309396564|gb|ADO74023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 467

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 142/466 (30%), Positives = 206/466 (44%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A
Sbjct: 1   MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG  VV             P++ V D L AL  LA   R R +  + A+ GS GKT
Sbjct: 61  HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT 
Sbjct: 121 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT + P HL     +E +A A+ E+F  L       +N DD     L     
Sbjct: 181 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDP----LIPAQA 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A G     +FG++++AD +L + +    E   + V+ QG+   V  H IG H A N    
Sbjct: 237 AKGRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++ L    P   R             T++D+ YNANPASM AA+  
Sbjct: 297 FALALALGYSPEECVRGLESARPYARRLN---VVDGLHGVTVVDDCYNANPASMDAALDT 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR +AVLGDM E+G      H  L    +      V   G        A  
Sbjct: 354 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 411

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +   +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 412 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 457


>gi|262370677|ref|ZP_06064002.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314477|gb|EEY95519.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 469

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 127/473 (26%), Positives = 208/473 (43%), Gaps = 28/473 (5%)

Query: 5   WTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           WT   LL+A QG+ +    P   +  I  DSR     +AF A+KG  +D H FI    ++
Sbjct: 14  WTAAQLLEATQGYWLNDQAPNTEIKRILTDSRDAEAGDAFLALKGERFDAHAFITQVAEQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           G  + +V+  + A      +    V D   AL +L    R +  +  +IA+TGS GKTTT
Sbjct: 74  GCQVAIVSQPIDAE-----VCQLVVPDTRLALGQLGAYRRAQNPQLKVIALTGSSGKTTT 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEML   LS I  T    G+ NN +GVP+ L  +  +  + + ELG SH GEI + ++LV
Sbjct: 129 KEMLGSILSRIAPTLVTRGNLNNDLGVPVMLLELHPEHQYAVMELGASHQGEIDYTSNLV 188

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A I  I  AHL  F G + I  AK+EI+  +   GT  +   D F + ++      
Sbjct: 189 QPLVAGIINIGTAHLGEFGGRDGICRAKSEIYAHIAPNGTSIVPAADDFADSIRQAVQTE 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + +  + G+    +      +  ++ +  ++       +V     G H  QN       
Sbjct: 249 QVLSFGAGGEIFATE-----IELQAQSATFKLNTPQGVRQVNLPFAGEHNVQNATAAAAF 303

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  +  L      +GR    +    QG   LID++YNANP SM       ++
Sbjct: 304 ALAIGISLDDIVLGLEQAVGAKGRLNFIQ----QGRHLLIDDTYNANPTSM----RAAAE 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSGFHVLALKDALPR- 420
           +    EG R+ V+GD+ E+G  +   H  L   ++S+  ++ V   G    A ++     
Sbjct: 356 VLAQQEGVRVMVMGDIGELGSSAAQQHYMLGRDLVSVKGLNFVVAVGEFAPAAQEGARST 415

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
                +    T +    F+ S +          + K S       L+  L+E+
Sbjct: 416 QYGKKMQAFLTQEQALPFLLSLIETHQPQSMSFLFKGSRYTHMETLMADLMEK 468


>gi|265765120|ref|ZP_06093395.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
 gi|263254504|gb|EEZ25938.1| hypothetical protein HMPREF0101_02395 [Bacteroides sp. 2_1_16]
          Length = 432

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 114/435 (26%), Positives = 187/435 (42%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +     +  D     L+     A G+  I    +                 
Sbjct: 194 KGELYDYLREKEDSTVFIDHDNAYLM---DIAHGLNLIPYGSEDSLYVNGHVTGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    G   +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 251 FEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    TLI ++YNANP SM AA+     ++   +   + +LGDM E+G  S + H
Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVKKK---MLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   +   V L G    A           H       +   +Q+       +++
Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      ++  L
Sbjct: 418 KGSNGIKLSTVVEFL 432


>gi|118473094|ref|YP_888508.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118174381|gb|ABK75277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 509

 Score =  220 bits (560), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 126/508 (24%), Positives = 202/508 (39%), Gaps = 53/508 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  + T   + + + G    I P+      V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIDM-TIARIAEIVGGELADITPEQAAATHVTGTVEFDSRAVGPGGLFLALPGARSDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG------VDDVLGALNK------------ 97
           F   AVQ GA  V+           + +P         VD   GAL              
Sbjct: 60  FAAAAVQSGAVAVLAARP-------VGVPAIVVRPDGGVDSASGALEHDTDGSGAAVLAA 112

Query: 98  ------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                             II +TGS GKT+TK++L   L+ + +  A  GS+NN +G P 
Sbjct: 113 LARLAAAVANELAADGLKIIGVTGSSGKTSTKDLLAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R   D DF + E+   H G I  L  +  P +AV+  +  AHL  F   E IA  KA
Sbjct: 173 TVLRATRDTDFLVLEMSARHPGNIAALAAIAPPSVAVVLNVGTAHLGEFGSREAIAKTKA 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ + +  +G + LN DD     +  ++ A  ++     G   +  +          +  
Sbjct: 233 ELPQAVGPSGVVILNADDIAVAAMAEQTDARVVRISRDPGSDIDV-WAGPVTLDELARPR 291

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +  +   ++V     G H   N L    +     A       AL+          R +
Sbjct: 292 FTLHTRDGEVDVNLAVHGDHQVSNALCAAAVALECGATPQQVADALAAAG--PASRHRMQ 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-------IAVLGDMCEMGEL 384
            +      T+I+++YNANP SM+A +  L+ ++    G +        AVLG+M E+G+ 
Sbjct: 350 VSTRADGVTVINDAYNANPDSMRAGLKALAWMARQTAGGQPGGKRRSWAVLGEMAELGDD 409

Query: 385 SQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQ 438
           + + H  +       ++S + +   G  + A+                    D     ++
Sbjct: 410 AITEHDAIGRFAVRLDVSRLLVVGSGRAMNAMHHGAVMEGSWGSESTMVADADAALTVLR 469

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L  GDVV+VK+SNS G   L   L+ 
Sbjct: 470 DELQPGDVVLVKASNSVGLGALAEALVA 497


>gi|253564192|ref|ZP_04841649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|251947968|gb|EES88250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 3_2_5]
 gi|301161513|emb|CBW21053.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis 638R]
          Length = 432

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 184/435 (42%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGIITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +     +        L+        I          N            E 
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLMDIAHDLNLIPYGSEDSLYVNGHVTGNSPYLTFE- 252

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    G   +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 253 --WKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    TLI ++YNANP SM AA+     ++   +   + +LGDM E+G  S + H
Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVEKK---MLILGDMRELGTESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   +   V L G    A           H       +   +Q+       +++
Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      ++  L
Sbjct: 418 KGSNGIKLSTVVEFL 432


>gi|259650801|dbj|BAI42963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 463

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T  ++ + ++   +          G++ DSR + P   F  ++G   DGH+FI  
Sbjct: 1   MMKM-TLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPA 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVG 118
           A   GA    V  D +       +P   V D L A+ KLA     ++    ++AITGS G
Sbjct: 59  AAAAGAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L
Sbjct: 117 KTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHAL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + L  P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+     L   
Sbjct: 177 SSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVS 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 ++  +FG                  +        +    +   I      N++ 
Sbjct: 233 RAKQVTQSQETFGLHPENTLFAHSISGHRNHTEFT----VEQWPELTFSIPIMGEYNVVN 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  + +                  +    R +  +      ++ + YNANP +MKA I 
Sbjct: 289 ALAALLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIH 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S+      GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL
Sbjct: 349 DFSEF--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEAL 406

Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   +H +  +    +   +Q+ +   D+V++K+S+      ++  L+ 
Sbjct: 407 TTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 459


>gi|115372741|ref|ZP_01460047.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
 gi|115370222|gb|EAU69151.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Stigmatella aurantiaca DW4/3-1]
          Length = 518

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 142/466 (30%), Positives = 206/466 (44%), Gaps = 11/466 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  D+L+A   H  G         IS D+RS+ P   F A++G  +D HDF+  A
Sbjct: 52  MAARFSDADVLKATGAHRGGGTAPASYPAISTDTRSLPPGCLFVALQGERFDAHDFLAQA 111

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG  VV             P++ V D L AL  LA   R R +  + A+ GS GKT
Sbjct: 112 HAGGAGGAVVRAGQALPAIPGDFPLYEVPDTLAALGALARFHRERFRIPVAAVGGSNGKT 171

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   L++        G+ NN +GVPLTL R+       + E GM+  GEI  LT 
Sbjct: 172 TTKEMVGAILATRGPALKTEGNLNNEVGVPLTLLRLEPSHVAAVIEAGMNRPGEITRLTR 231

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   +IT + P HL     +E +A A+ E+F  L       +N DD     L     
Sbjct: 232 VIQPQAGLITVVQPEHLEGLGSLEGVAEAEGELFRELSPEAVAVVNLDDP----LIPAQA 287

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A G     +FG++++AD +L + +    E   + V+ QG+   V  H IG H A N    
Sbjct: 288 AKGRGKRLTFGRAESADVRLSQVETRGREGLGLTVRYQGRDWPVRLHFIGEHNALNATGA 347

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             +   L    +  ++ L    P   R             T++D+ YNANPASM AA+  
Sbjct: 348 FALALALGYSPEECVRGLESARPYARRLN---VVDGLHGVTVVDDCYNANPASMDAALDT 404

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +     GR +AVLGDM E+G      H  L    +      V   G        A  
Sbjct: 405 LRTL-VTAGGRAVAVLGDMLELGPGELEEHAALGTRAAGR-AQLVAFFGPRSEKGFQAAS 462

Query: 420 RSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +   +  L  ++   L  GDVV+VK+S      R++  L
Sbjct: 463 GLGDATAHFTEVGPLVDWLTPRLKAGDVVLVKASRGMRLERVVAAL 508


>gi|60679976|ref|YP_210120.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60491410|emb|CAH06159.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 432

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 186/435 (42%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +  I    VD
Sbjct: 16  VTTDSRNCPAGSLFIALKGESFNGNAFAAQALKDGCAYAIVDEAEYAPENNRHI--ILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIGV
Sbjct: 74  NCLQTLQQLANYHRRQLGTKVIGITGTNGKTTTKELISAVLSKSHNVLYTEGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+TL R+  + +  + E+G +H GEI+FL H+  P   +IT +  AHL  F   E +   
Sbjct: 134 PMTLLRLKAEHELAVIEMGANHPGEIKFLVHIAEPDYGMITNVGKAHLEGFGSFEGVIRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +     +        L+     A G+  I    +                 
Sbjct: 194 KGELYDYLREKEDSTVFIHHDNAYLM---DIAHGLNLIPYGSEDALYVNGHVTGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    G   +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 251 FEWKAGKDGDLHKVQTQLIGEYNFPNALAAVTIGRFFGVEAGKIDEALAGYTPRNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N    TLI ++YNANP SM AA+     ++   +   + +LGDM E+G  S + H
Sbjct: 311 KKTADN----TLIIDAYNANPTSMMAALQNFRNMTVKKK---MLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   +   V L G    A           H       +   +Q+       +++
Sbjct: 364 RKIVDFLQECSFEKVLLVGEQFTAT------HPPYHTYANAQEVIKELQTEKPKDYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      ++  L
Sbjct: 418 KGSNGIKLSTVVEFL 432


>gi|199598809|ref|ZP_03212221.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
 gi|199590314|gb|EDY98408.1| UDP-N-acetylmuramyl pentapeptide synthase [Lactobacillus rhamnosus
           HN001]
          Length = 462

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 209/469 (44%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +          G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +       +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+     L       
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +      Q   +      +G +   N L  L +
Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
                 GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 F--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H +  +    +   +Q+ +   D+V++K+S+      ++  L+ 
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458


>gi|227504689|ref|ZP_03934738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198699|gb|EEI78747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 511

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 121/516 (23%), Positives = 200/516 (38%), Gaps = 60/516 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G       P   V G +  DSR + P   F A+ G   DGHDF  
Sbjct: 1   MIAL-TLQEIADITGGRLDCVPDPAATVTGFVEFDSRKVTPGGLFLALPGARVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------------------------LGA 94
            AV+ GA  V+           + +P   V+                          + A
Sbjct: 60  KAVESGAVAVLAARP-------VGVPAIVVEPTGKVEGDGANADIYANDEDGSAAAVIQA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ LA A   R        I+ +TGS GKT+TK+++     +  +T A  GS+NN +G+P
Sbjct: 113 LSALARAVTQRLAAEDGLNIVGVTGSAGKTSTKDLIATIFRAAGETVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R     ++ + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTEYLVAEMSARGIGHIRHLTGITAPKVGVVLNVGTAHLGEFGSRENIALAK 232

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQ 265
            E+ E L       +   ++    +   +     K +Y       G +  A +     + 
Sbjct: 233 GELVEALPSAAEGGVAVLNANDSFVAGMALRTNAKVVYYSAVAKQGSTPPAQYYATDVQL 292

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                   +        +      +   Q         + +   +   + A ++   +  
Sbjct: 293 DDVARASFLMHTPGHAPLPVKLQVFGAHQVSNALAAAAAAIELGLSAELVANALSGHRIA 352

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              R      +   TLID+SYNANP SM+ A  ++    +   + R IAVLG+M E+G+ 
Sbjct: 353 SEHRMDVRNRRDGVTLIDDSYNANPDSMRAAIAALAYTATARPDARSIAVLGEMGELGDD 412

Query: 385 SQSFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441
           +   H  L   L+ Y++ H+   G   +  A+ +A   + I+   S  +D     + S L
Sbjct: 413 ALDAHRQLGAELAKYHVDHLVAVGSSPNTRAMAEAAQAKGINTSVSVDVDEAAKIVDSLL 472

Query: 442 VD-------------GDVVVVKSSNSCGFYRLINLL 464
                           DVV+VK+SN+   + +   L
Sbjct: 473 RTPPVGVDDWPQRDVKDVVLVKASNAQRLWLVAEKL 508


>gi|190572798|ref|YP_001970643.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010720|emb|CAQ44329.1| putative 3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Stenotrophomonas maltophilia K279a]
          Length = 464

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 120/470 (25%), Positives = 192/470 (40%), Gaps = 24/470 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +   +     G   G      ++ +S D+RS+ P   + A++G  +DGHDF   A  +
Sbjct: 5   LLSL--IAHWAGGEIHGD--DVAIDAVSNDTRSLGPGSLYVALRGERFDGHDFAADAQAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++V       +  + +P   V D   AL K+A   +      + AITGS GKT+ K
Sbjct: 61  GASALLVER-----LLPIELPQVLVADSELALAKIATGMQRDRGTEVFAITGSNGKTSVK 115

Query: 124 EMLTIALSSIKKTYA-----CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            +L   L  + +          G+ NN IG+PL +   P D D+ ++E+G    G+I +L
Sbjct: 116 SLLLSILQQVAQHAHKVVYANPGNRNNEIGLPLAVIDAPEDADYAVYEMGAGKPGDIAYL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP  A++  IAPAHL     +  +A  K  I+  L   G   +N DD++    +  
Sbjct: 176 TDIARPRYALVNNIAPAHLERMGSLLGVAVTKGAIYAALPADGVAVINVDDAYGRWFEQH 235

Query: 239 SH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +  +G    AD   R  +  ++ +   +        VV    G H   N L
Sbjct: 236 FVGTPARCRVLRYGLEHTADITARDIRAGAQGNQFTLVSPAGEARVVLGLPGRHNVSNAL 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +      D+      L+   P  GR   ++         L+D+SYNANP S+ AAI
Sbjct: 296 AAASLALAAGVDLALIAAGLAEAQPVPGRQIAHQLRNG---AVLVDDSYNANPGSLAAAI 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+     G      VLGDM E+G  +++ H           +  ++  G    A   A
Sbjct: 353 DALAAAPEEG----WLVLGDMRELGPDAEALHAQAGIRARAAGLKRLYALGPLSAAAAAA 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +  T   L   +Q  L  G   +VK S       ++  LL +
Sbjct: 409 FGEGGR--HFATHGALSQALQDELHAGVRCLVKGSRGSAMDLIVKALLAQ 456


>gi|258509534|ref|YP_003172285.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
 gi|257149461|emb|CAR88434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus GG]
          Length = 462

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 204/469 (43%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +          G++ DSR + P   F  ++G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLRGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +       +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+     L       
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +        +    +   I      N++  L  
Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTEFT----VEQWPELTFSIPIMGEYNVVNALAA 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +                  +    R +  +      ++ + YNANP +MKA I   S+
Sbjct: 292 LLVGRRFHVKPEAMQKALVHFQVTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
                 GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 F--QTAGRHIAVLGDMLELGEQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H +  +    +   +Q+ +   D+V++K+S+      ++  L+ 
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458


>gi|167764247|ref|ZP_02436374.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
 gi|167698363|gb|EDS14942.1| hypothetical protein BACSTE_02632 [Bacteroides stercoris ATCC
           43183]
          Length = 475

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 191/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI+ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G        
Sbjct: 57  TGITTDSRNCPEGSLFIALKGDTFNGNAFAAKALEAGSTYAVVDEAAYAPAGDT--RYIL 114

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN I
Sbjct: 115 VDNCLHTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNVLYTLGNLNNPI 174

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 175 GVPLTLLRLTTEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 234

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L + G   +        L   +  A G+  I    ++              
Sbjct: 235 RTKGELYDYLRRQGNSTIFLHQDNPYL---REIARGLNPITYGEENSLYINGHVTGNSPY 291

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                    +G+  +V    IG +   N L  + I      + +   KAL+ + P+  R 
Sbjct: 292 LAFEWRAGKEGEFHQVHTRLIGEYNFPNALAAVTIGHFFGVEAEKIDKALNEYEPRNNRS 351

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM AAI     +    +   + +LGDM E+G+ S  
Sbjct: 352 QLKKTADN----TLIIDAYNANPTSMLAAIGNFRNMQAEKK---MLILGDMRELGKDSAE 404

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L  Y    V L G    A +                 L   +Q +   G  +
Sbjct: 405 EHQRIVDYLEEYGFEDVILVGELFAATRH------TYTTYPDAPALIAALQKNKPCGKTI 458

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +++ L
Sbjct: 459 LIKGSNGIKLNTVVDYL 475


>gi|215482066|ref|YP_002324248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851362|ref|ZP_08433414.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332868773|ref|ZP_08438396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
 gi|213988030|gb|ACJ58329.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730078|gb|EGJ61406.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013150]
 gi|332733202|gb|EGJ64399.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6013113]
          Length = 466

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 200/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG+ 
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFGE- 255

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 256 -GGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|300776807|ref|ZP_07086665.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300502317|gb|EFK33457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 423

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 104/435 (23%), Positives = 192/435 (44%), Gaps = 27/435 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++IDSR IA  + FFA  G +++       A+  GA  V+V    +    +    +F V 
Sbjct: 16  VTIDSRKIAENDIFFAFSGENFNAATLAEKAIDDGALAVIVE---LPEFENRDKNIFYVP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             L  L +LA+  R +     I +TGS GKTTTKE++   LS         G+ NNHIGV
Sbjct: 73  STLEFLQQLAIYHRRKLSIPFIGLTGSNGKTTTKELIHAVLSEKFNVQYTSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  +  + +  + E+G +H  EI FL  + +P    IT    AHL  F G E +   
Sbjct: 133 PLTILSIKPEHEMAVIEMGANHQKEIEFLCTISQPDFGYITNFGKAHLEGFGGFEGVIKG 192

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++ L+      +  ++   +L K +++   I    +FGK  +        ++    
Sbjct: 193 KSELYDYLKNNNRTIVVNENDPIQLEKTENYPSKI----TFGKETSNYNFESFSEEHFVG 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                    + ++ V    G +   N+     +        +    AL ++ P   R + 
Sbjct: 249 LI------YQGVKAVSKLTGEYNFTNLCAAASLGLHFGIGFEKIKHALELYTPTNMRSQV 302

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +        TL+ ++YNANP+SM A+++         EG +  ++GDM E+G+ S+  H
Sbjct: 303 VKKEGR----TLVLDTYNANPSSMTASLNNFISF----EGSKTIIIGDMLELGDESEKEH 354

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ ++    +   +   G H  A+      +      E    L  +++   +  + +++
Sbjct: 355 QNILKLAQDLHFDEIITVGKHFKAV------NSSDLAFENTTELAEYLKQHKIQTENILL 408

Query: 450 KSSNSCGFYRLINLL 464
           K S      ++I+ +
Sbjct: 409 KGSRGIALEKIIDFI 423


>gi|296269382|ref|YP_003652014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Thermobispora
           bispora DSM 43833]
 gi|296092169|gb|ADG88121.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Thermobispora bispora
           DSM 43833]
          Length = 455

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 132/467 (28%), Positives = 199/467 (42%), Gaps = 19/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G   G   P+  V G + IDSR++ P   F AIKG   DGHDF  
Sbjct: 1   MIPLP-LARVAEITSGALNGLADPEAVVRGPVVIDSRAVEPGSLFAAIKGSRADGHDFAQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA  V+ +  + A        V   D V    +  A         T++ +TGS G
Sbjct: 60  EACAAGAVAVLASRPVDAP------AVIVRDVVAALADLAAAVVAELPSVTVVGVTGSQG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK++L      I  T A +GS+NN IG PLT+ +      F + EL   ++G I +L
Sbjct: 114 KTTTKDLLAGLTERIGPTVAPVGSHNNEIGHPLTVLKADERTRFLVLELSARNVGHIAYL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P I V+  +  AH+  F G E IA AK E+ E L + G   LN DD +   +  +
Sbjct: 174 TRIAPPRIGVVLNVGAAHIGVFGGREAIAKAKGELVEALPEDGVAVLNADDPYVREMAGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A       S      A+ +    +    ++   +     S  V     G HM  + L 
Sbjct: 234 TRARVTWFGRSAEARIRAENETLDER---GRASFTLCTPSGSAPVRLRLHGAHMVPDALA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L   V    + LS   P      R          T+I+++YNA+P S++AA +
Sbjct: 291 AAAVAYELGLPVVAIAEELSRAEP--RSRWRMEVTDRADGVTVINDAYNASPDSVRAAFA 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +      RR AV+  M E+GE     + +   + +   +  + + G     +    
Sbjct: 349 ALRAM--GDGRRRFAVVAAMRELGEAGAELNEEFGRIAAGSGLEALIVVGDDAGPILAGA 406

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           P +IHV      D     + S L  GDVV+VK   + G  R+   +L
Sbjct: 407 PGAIHV---PDTDAAARELASRLAPGDVVLVKGPRAAGLERVAAAVL 450


>gi|116491615|ref|YP_811159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
 gi|116092340|gb|ABJ57494.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oenococcus oeni PSU-1]
          Length = 461

 Score =  220 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 128/480 (26%), Positives = 211/480 (43%), Gaps = 40/480 (8%)

Query: 5   WTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHY--------- 51
           ++  ++ + + G  I I      + FV+ +  DSR I     F  I              
Sbjct: 3   YSIAEICKIVDGKLINISNRQANETFVDSLDFDSRKIKQGALFLPISDHDNASVHKLFSD 62

Query: 52  ------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 DGH FI  A++ GA     +      I   S+P+  V D   AL  LA     +
Sbjct: 63  YTIAEKDGHKFINSALKNGAVASFADH-----IVQTSLPLILVSDTQLALWALAKNYLNK 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+TGS GKTTTK+++   LS   K +  + S NN IGVP T+  MP D +  + 
Sbjct: 118 INPKRIAVTGSNGKTTTKDLIASVLSRKYKVHRTVASNNNEIGVPTTILNMPADTEIAVI 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+GM HLG++  L+ ++ P+I++IT I  AH+  F   ++IA AK EI +GL+K GT   
Sbjct: 178 EMGMDHLGQLTALSKMLEPNISLITMIGEAHIEFFKTRDKIADAKMEIIKGLKKDGTFIY 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + D    E+L  +   L      +FG+ ++ +F + + +     S+     +        
Sbjct: 238 DGD----EILLKERADLFSGEKVTFGEKESNNFWVSQIEDKKRLSF-----KVNQETYSV 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G   A N    + +         T  +        +    R +        T+I + 
Sbjct: 289 NLLGKFNADNCAAAVAVAKEFNLSSKTIQEGFDN---LQITKNRLQLLTGSKGETIISDV 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN+NP +   AI +L        G++I VLGDM E+G+   S H+ L   +       V+
Sbjct: 346 YNSNPTAAIKAIEILKDFP--TRGKKILVLGDMLELGDQEVSLHLALKAPIERAAFDEVY 403

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           L G  + +L   +    +      +  L   +QSSL   DVV++K+S+     ++   L+
Sbjct: 404 LVGPIMKSLAVKMQARWYDKAF--LTDLSRDLQSSLSKNDVVLLKASHGIHLEKVERALI 461


>gi|317474461|ref|ZP_07933735.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
 gi|316909142|gb|EFV30822.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides eggerthii 1_2_48FAA]
          Length = 432

 Score =  220 bits (559), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 191/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG +++G+ F   A++ G+   +V+       G        
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNTFAAKALEAGSAYAIVDEAAYVPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN I
Sbjct: 72  VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E + 
Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L + G   +        L K       I      G   N            
Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQDGLYVNGHVTGNSPYLIF 251

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E    +   +G   EV    IG +   N L  + I      + +   +AL+ + P+  R 
Sbjct: 252 E---WKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPEKIDQALNEYEPRNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM A+IS    +     G+++ +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILGDMRELGKDSPE 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L   +   V L G    A +   P             L   +Q +   G  +
Sbjct: 362 EHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALIAELQKNKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +++ L
Sbjct: 416 LIKGSNGIKLNTVVDYL 432


>gi|281420992|ref|ZP_06251991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
 gi|281404910|gb|EFB35590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           copri DSM 18205]
          Length = 433

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 191/435 (43%), Gaps = 17/435 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  +DG+ F   A++KG   V+V+    A  G        V+
Sbjct: 16  ITTDSRDCPEGSIFLALKGASFDGNKFADMALEKGCAYVIVDEKEYAKEGEE--RYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    +LA   R      ++ ITG+ GKTTTKE+++  L          G++NN +GV
Sbjct: 74  DCLTTFKELAREHRRHFDIPVVGITGTNGKTTTKELVSAVLGEKFNVMFTQGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+IR L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLSPENEIAVVEMGASHPGDIRKLVEYVEPTCGMITNVGRAHLQGFGSFEGVKKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L     +     D+  E L   +    I  + ++GK +N D            
Sbjct: 194 KGELYDYLAANDALVFINADN--EHLMQMAEQRNINRLITYGKDENCDVWGEVISCAPFL 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +          EV  H IG +   NML  + I             AL  + P   R + 
Sbjct: 252 KFRWRTESFDWHEVQTHLIGSYNIDNMLAAITIGLHFDVKPQQIDHALENYIPSNNRSQL 311

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A N+    L+ ++YNANP+SM AAI     +       ++A+LG M E+GE+S   H
Sbjct: 312 EETAHNK----LVVDAYNANPSSMAAAIENFRMMDVP---HKMAILGQMGELGEVSHEEH 364

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L    + +VWL G     +             + ++ +   ++++      +++
Sbjct: 365 QKVVDQLQTAGLENVWLVGDEFKDI------PCSYRKFQNVEEVKEALKANQPHDHYILI 418

Query: 450 KSSNSCGFYRLINLL 464
           K SNS   ++L  LL
Sbjct: 419 KGSNSVKLFQLPELL 433


>gi|194099354|ref|YP_002002453.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
 gi|193934644|gb|ACF30468.1| putative UDP-MurNAc-pentapeptide synthetase [Neisseria gonorrhoeae
           NCCP11945]
          Length = 436

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 197/451 (43%), Gaps = 22/451 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++G  
Sbjct: 3   SENKPVSRIVTDSRDIREGDVFFALAGGRFDAHDFVGGVLSAGAAAVVVSREDCAALGGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVSA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNALRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI+ GL   G   +  +D+   + K  +  L   T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYAGLCSDGMALIPQEDANMAVFKTATFNLNTCTFG----VDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            +             ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VRAENIVLKPLSCEFDLVCGDERTAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAA+ VL+++       RI V+GD
Sbjct: 295 QGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAAVDVLARMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   L +   V+VK S       ++  L ++
Sbjct: 406 LSHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|302383887|ref|YP_003819710.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194515|gb|ADL02087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 474

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 156/464 (33%), Positives = 223/464 (48%), Gaps = 10/464 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G   G V     NG++ +SR I P + F A+KG   DGHDF   A  
Sbjct: 7   PLWTAQEIAVATGGRIEGGVFDA--NGLTYNSREIEPGDLFLALKGAR-DGHDFAASAFA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            GA   +V   +         P   V D L AL  L  AAR R       A+TGSVGKT+
Sbjct: 64  AGAAGALVERPVD------GGPCIVVPDTLHALEALGAAARDRAPHIRRGAVTGSVGKTS 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             + +   L      +A I SYNNHIGVPLTLARM   V+  +FE+GM+  GEI  L  +
Sbjct: 118 VTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMHPSVERAVFEIGMNAPGEIGPLARM 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+PH A +TT+ P H+  F+  E   +A+          G + +   D+ +  L  ++  
Sbjct: 178 VQPHAACVTTVGPVHIEAFADGEAGVAAEKAAIFQGLGPGGLAVINGDNPWVELLHQAAL 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + +FG     D +L  +    E + +  ++ G++        G+H   N L  + 
Sbjct: 238 RAGARVATFGSEPAHDARLIDFTPNPEGARVTAEVYGRTHVFPLRQSGFHWGLNSLAVIL 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L   V+TA++AL+ F P +GRG+     L +G FTLIDESYNANP SMKA    L 
Sbjct: 298 MLDALDVPVETALEALAHFEPLKGRGETRLVHLPKGAFTLIDESYNANPLSMKAGFLSLG 357

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  GRR+ VL DM E+G+ S++ H  LA  +    I  V  +G  +  L DA+   
Sbjct: 358 AKPVERRGRRVVVLTDMLELGDQSEALHAGLATAIEAAAIDVVHAAGPQMRHLYDAISPE 417

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               ++ T   L           D+V+VK SN      +   LL
Sbjct: 418 RRGVWAGTAAALADQAADLAGPDDIVMVKGSNGSKASLVAAALL 461


>gi|326565087|gb|EGE15280.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Moraxella catarrhalis 46P47B1]
          Length = 494

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 135/492 (27%), Positives = 197/492 (40%), Gaps = 39/492 (7%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           W   +L QAIQG        +     I  D+R I   + F AIKG  +D HDFI +A Q+
Sbjct: 9   WNQDNLKQAIQGQWHHSDKAEIDARRIVTDTRQIQAGDVFLAIKGERFDAHDFIQNAYQQ 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
           GA   +V       +    +P   V D   AL  L    R      T+IA+TGS GKTTT
Sbjct: 69  GASAAIVER-----VVDCDMPQLLVADTKLALGNLGKFRRDAHPDLTVIALTGSSGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   LS I  T    G+ NN +GVP+ L  +  +  F + ELG +HLGEI +   +V
Sbjct: 124 KEMIGAILSQIAPTLITRGNLNNDLGVPIMLLELTDEHRFLVIELGANHLGEIAYTASMV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK---- 238
           RP +A+I  I  AHL  F G   IA AK+EI+  L   G   L + D F+  L  +    
Sbjct: 184 RPDVALILNIGTAHLGEFGGRANIACAKSEIYSALTSQGVAILPFSDDFYPELLKQASQF 243

Query: 239 ----------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                   A+      S        F        +  ++     
Sbjct: 244 TKLHLSFGERAVPIEQAGLEATDQAMLKAEGISSVLMMGDLFADDIETFATHSTFTLNTN 303

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                          + ++ +      +  T  +   ++ ++    +    K     L+ 
Sbjct: 304 IDIDQIDSLPVHLPFIGEHNVANALAAASATFALGVPLEQIAKGLLRATPPKGRLMRLSM 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             + +ID++YNANP SM AA  VL          +I VLGD+ E+G+ +   H  L   L
Sbjct: 364 DGYHIIDDTYNANPTSMLAAAKVLE----AELDTKILVLGDIFELGDAADDEHTKLGHQL 419

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGD-VVVVKSSNS 454
           +L  I HV   G H+     A+     +  +      L   ++  L  G   V+ K S  
Sbjct: 420 ALLEIDHVLTLGNHMAHTATAINEQKSIARHYTDKPSLLKDLRQLLSHGSATVLFKGSRD 479

Query: 455 CGFYRLINLLLE 466
                LI  L  
Sbjct: 480 MAMESLIADLTA 491


>gi|169794476|ref|YP_001712269.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213158952|ref|YP_002320950.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
 gi|301345413|ref|ZP_07226154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB056]
 gi|301510059|ref|ZP_07235296.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB058]
 gi|301596005|ref|ZP_07241013.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB059]
 gi|169147403|emb|CAM85264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii AYE]
 gi|213058112|gb|ACJ43014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Acinetobacter baumannii AB0057]
          Length = 466

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 199/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+   V  G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVVANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KTPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|323144062|ref|ZP_08078706.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
 gi|322416175|gb|EFY06865.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Succinatimonas hippei YIT 12066]
          Length = 461

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 208/471 (44%), Gaps = 24/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +   +L +  QG   G      V  ++ DSR+  P   F A+KG  +D HDF+  A
Sbjct: 1   MIPFY-LSELARKAQGTLSG--EDIEVASVTTDSRNCPPGSLFIALKGEKFDAHDFLEKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  + V+       G+ S+P     D L  L    +  R +  A I A+TGS GKT
Sbjct: 58  VLSGAAALGVS-----LGGNFSVPCVKCADTLRLLGLAGLLVREKCPAKIGAVTGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM    L          G++NN +GVPLTL R+   +D+ I E G SH  +I+  + 
Sbjct: 113 TVKEMAYSILKQGFNAMCTNGNFNNDVGVPLTLLRLDEKLDYAIIEQGASHKEDIKRTSE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKS 239
            V+   AVIT +  AH+  F     +   K+EI + +  + G   +     + +  K   
Sbjct: 173 FVQADAAVITNVGQAHIEGFGSAYGVYKGKSEILDSVLARGGIGIVPSCSQWIDEWKKDY 232

Query: 240 HALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               ++  + +FG + +   ++ + K  S++    +  +G+S ++  + +G H AQN   
Sbjct: 233 KEAFLQGKMLTFGYNDDDFVKVSEVKSSSQEVSFILTAKGQSEQIKLNLLGKHNAQNAAA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L  D       L      +GR        N   FTLID++YNA+  ++ + I 
Sbjct: 293 AAALCLALGCDFKYIKPGLENTSSVKGRL----QVKNFAGFTLIDDAYNASFNAVLSGID 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            LS  +    G ++ V GDM E+G+ + S H  +        I+ +   G       +  
Sbjct: 349 TLSSFA----GFKVMVFGDMGELGDEAVSLHEKVGLYA-KNKINLLLCLGPLSRHSVEKA 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466
                  + ++ D L  F++  +    D  V++VK S++     + + L+ 
Sbjct: 404 --GSIARHFDSHDALAAFLKDEVLKRHDNAVILVKGSHAMRMDLITDKLIA 452


>gi|256819594|ref|YP_003140873.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581177|gb|ACU92312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 185/441 (41%), Gaps = 21/441 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++                V
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT----LLV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G+ NN+IG
Sbjct: 70  DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F   E +  
Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189

Query: 209 AKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQL 260
            K E+++       TI  N D+   E L    +         G+        ++    Q 
Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEGVNVSAQCLSTQPVKIQF 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 +        ++G +            + N    +            + KA+   
Sbjct: 250 ADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTN-IAASVAFGRYFKLSTKAIQKG 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                        L  G  T++ ++YNANP+SM AAI  L  ++       + +LGDM E
Sbjct: 309 IESYIPQNNRSQLLQWGSNTVLLDAYNANPSSMTAAIDNLLSMNSFPNK--VLILGDMFE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ +   H  + + L  +  + V+L G +    K   P+       ET +      +  
Sbjct: 367 LGDYATQEHQSIVDKLKEHQWAGVYLIGKNFKQTKAPYPQ------YETFEEFREVFKKL 420

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
                ++++K S      RLI
Sbjct: 421 SFQDSLILIKGSRGMALERLI 441


>gi|218131936|ref|ZP_03460740.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
 gi|217985812|gb|EEC52152.1| hypothetical protein BACEGG_03559 [Bacteroides eggerthii DSM 20697]
          Length = 432

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 191/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG +++G+ F   A++ G+   +V+       G        
Sbjct: 14  TGVTTDSRNCPKGSLFIALKGDNFNGNAFAAKALEAGSAYAIVDEADYVPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R R    II ITG+ GKTTTKE+++  LS         G+ NN I
Sbjct: 72  VDNSLRTLQQLANYHRRRLGTRIIGITGTNGKTTTKELISAVLSRKYNILYTQGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +   HL  F   E + 
Sbjct: 132 GVPLTLLRLQAEHDLGIVEMGASHPGDIKELVEIAEPDYGIITNVGKGHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L + G   +        L K       I      G   N            
Sbjct: 192 RTKGELYDYLRQKGDSTIFIHQDNPYLTKLAWGLNPISYGEQDGLYVNGHVTGNSPYLIF 251

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E    +   +G   EV    IG +   N L  + I      + +   +AL+ + P+  R 
Sbjct: 252 E---WKSGKEGSLHEVHTRLIGEYNLSNALAAVTIGCFFGVEPEKIDQALNEYEPRNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM A+IS    +     G+++ +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLASISNFHNMQA---GQKMLILGDMRELGKDSPE 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L   +   V L G    A +   P             L   +Q +   G  +
Sbjct: 362 EHQKIVDYLEKCDFKDVALVGELFAATRHNYPT------YPDAPALITELQKNKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +++ L
Sbjct: 416 LIKGSNGIKLNTVVDYL 432


>gi|224023460|ref|ZP_03641826.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
 gi|224016682|gb|EEF74694.1| hypothetical protein BACCOPRO_00161 [Bacteroides coprophilus DSM
           18228]
          Length = 461

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 188/435 (43%), Gaps = 20/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A+QKG    VV+    A        +  V+
Sbjct: 47  VTTDSRNCPEGSMFIALKGGNFNGNAFAEQALQKGCRYAVVDEPEYAQKDDP--RILLVE 104

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L          G+ NNHIGV
Sbjct: 105 DCLKALQELANYYRRQLGTRIIGITGTNGKTTTKELIATVLGRKYNVLYTQGNLNNHIGV 164

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G SH GEI  LTH+V P   +IT +  AHL  F   E +   
Sbjct: 165 PLTLLRLKPEHEIAVVEMGASHPGEIHMLTHIVEPDYGIITNVGKAHLEGFGSFEGVIRT 224

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L       +   +    L +       I+   + G   +              
Sbjct: 225 KGELYDYLRSRKNSSVFIQNENPYLNQIAEGLNCIRYGQTEGLYVSGHVLKCSPFL---- 280

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  +    EV  H IG +   N+L    I      + +    ALS + P+  R + 
Sbjct: 281 -AFAWIGEKGLHEVQTHLIGTYNLDNVLAAAAIGRFFGVEEEEISLALSSYIPQNNRSQL 339

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N     LI ++YNANP SM AA+     +       ++ +LGDM E+G  S+  H
Sbjct: 340 EETPNNH----LIVDAYNANPTSMMAALENFRHVEAA---HKMVILGDMKELGSSSKEEH 392

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   N   V L G     ++ +  +         +D L   ++S    G  ++V
Sbjct: 393 AKIVDFLDTCNFEKVILVGPEFGCIQTSYEK------YPDVDTLIDHLKSDCPIGFYILV 446

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    RL   L
Sbjct: 447 KGSNSMKLSRLPEFL 461


>gi|225009973|ref|ZP_03700445.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
 gi|225005452|gb|EEG43402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-3C]
          Length = 428

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 197/440 (44%), Gaps = 27/440 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +S DSR I     +FA+ G  ++G+DF + A+  GA   VV+                
Sbjct: 14  KSVSTDSRKIESNSIYFALSGERFNGNDFAIDALNNGALYAVVDAAKYKDHPG----CIY 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V DVL AL  L    R   KA +I++TGS GKTTTKE++   LS    T A +G+ NNHI
Sbjct: 70  VADVLKALQALGTYHRNYCKAKVISLTGSNGKTTTKELIYKVLSQKYNTSATLGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +    +F + E+G +H  EI FL  L +P    IT    AHL  F G++ + 
Sbjct: 130 GVPLSLLNIKESTEFAVIEMGANHQKEIEFLCALAQPDFGCITNFGKAHLEGFGGVQGVI 189

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+++ L       L  ++   +    + +   I    SFGK + + +     K   
Sbjct: 190 KGKSELYQYLIANNKTILYNNEDPIQAGALRQYDHSI----SFGKDQESTYTTSILK--- 242

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             S   V++Q +   +     G + A N ++   I       +     A+  + P   R 
Sbjct: 243 --SNTSVKIQFQDTTINTSLYGAYNATNCMIAASIGRHFDVPIQDIKNAIESYKPNNNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +     G   L+ ++YNANP+SM+ AI   S+++      +I VLGDM E+GE +  
Sbjct: 301 ELRQ----IGPHMLVLDAYNANPSSMEVAIKHFSELTHSSLKNKIVVLGDMFELGETAAK 356

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-- 445
            H  +   L L  I+ + L G      + +             D      ++S    D  
Sbjct: 357 EHQAIVAQLKLSKINRIILIGALFHNTQHSFES------YPNFDAFKQ--KNSPFKSDPS 408

Query: 446 VVVVKSSNSCGFYRLINLLL 465
           ++++K S      R++ LL 
Sbjct: 409 LILIKGSRGMALERVLPLLE 428


>gi|282859876|ref|ZP_06268964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
 gi|282587279|gb|EFB92496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella bivia JCVIHMP010]
          Length = 476

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 117/443 (26%), Positives = 196/443 (44%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+ KG    +V+    A  G+       VD
Sbjct: 51  VTTDSRNCPEGSIFIALKGASFNGNKFAKAALDKGCSYAIVDEAEYAEAGNN--RFILVD 108

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G++NN IGV
Sbjct: 109 NALVAYKELAREHRRNIDIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNFNNDIGV 168

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M  D +  + E+G SH  +I  L   V P   +IT +  AHL  F   E + + 
Sbjct: 169 PRTLLEMTSDDEIAVIEMGASHPKDIEKLVTYVEPTCGLITNVGRAHLQGFGSFEGVKNT 228

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-------- 261
           K E+++ L+    +     +     L   +     + + ++G+   AD +          
Sbjct: 229 KGELYDYLKAHNALLF--LNESNPDLVEMAEQREFERVITYGQDNTADVKGEVVSCAPLL 286

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K+   + QS    Q+     EV  + IG +   NML  + I      +      AL  + 
Sbjct: 287 KFSWQATQSLGTEQVVSAVYEVQSNLIGAYNLDNMLAAITIGLHFGVEPQKICHALESYV 346

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +      N+    LI ++YNANP+SMKAAI     +    +   +A+LGDM E+
Sbjct: 347 PSNNRSQLTETKDNK----LIVDAYNANPSSMKAAIENFRLMDIKNK---MAILGDMREL 399

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+++   H  + + L    + +VWL G            +        ++ +   I +  
Sbjct: 400 GDVTAEEHQRVVDELIASGLENVWLVGEEFGKT------NCSFRKFADIEEVKAAIAAQK 453

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
                +++K SN    + L  LL
Sbjct: 454 PIDHYILIKGSNGIKLFELPELL 476


>gi|294788568|ref|ZP_06753810.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483445|gb|EFG31130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 459

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 129/470 (27%), Positives = 213/470 (45%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T + + + +            +N I  DSR     + F A+ G ++D HDF+   
Sbjct: 6   MKTL-TLNFICETLN--LPKPQTNQTINRIITDSRQAQSGDLFVALIGENHDAHDFVADV 62

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA L +V+ D    +         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 63  LAKGA-LALVSRDDFVGVSG----CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKT 117

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL  +  +  + + E+GM+H GE+  
Sbjct: 118 TVKEMLATVLREKFGADAVLATAGNFNNHIGLPLTLLNLRENHRYAVIEMGMNHFGELAV 177

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P++A++     AH+   F+G+++IA AK+EI++G+++ G   L  DD+   + +
Sbjct: 178 LTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQ 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A    L ++T  +FG     D            S  ++    + + +     G H   N 
Sbjct: 238 AACKNLNLQT-QTFG-FAQGDIHAENLVLQPLASEFDLIQGSECVHITLPVAGRHNVSNA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +    + L+ F   +GR    +        T++D++YNANP SMKAA
Sbjct: 296 CAAAALALAGGVKLTEIARGLANFANIKGR---LQVKHGIKNSTILDDTYNANPDSMKAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       R+ V+GDM E+GE  +   H ++        I   +  G + +   
Sbjct: 353 LDVLAKMPA----PRVFVMGDMGELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAA 408

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +         +    D L L +   L +   V+VK S       ++  L+
Sbjct: 409 EKF--GADGLWFVDKDPLILSLTHDLAENASVLVKGSRFMKMEEVVMALM 456


>gi|257470789|ref|ZP_05634879.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 428

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 197/462 (42%), Gaps = 36/462 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D  +     S+    +  +  + +DSR +   + FFAI     +G+ +I   
Sbjct: 1   MKILFNILD--KIFGIKSVVEKNE--IGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 52

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +     +       V  V+D +  + +LA   R      +IAITGS GKT
Sbjct: 53  LEKGAALVIAD-----NYKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 107

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ 
Sbjct: 108 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 167

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P I VIT I  +HL      E +  AK E+ + +     I    DD F + L     
Sbjct: 168 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIV-FGDDPFLKDL----- 221

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G   N ++Q++ +    E    E++ +    +      G H   N  M +
Sbjct: 222 -----NGIKVGYENNNNYQIKNFTDSDEGLSFEMEEK----KYTVSLNGKHNCINTAMAI 272

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 273 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 328

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++  + +  +I VLGDM E+GE    +H ++ E   + +   ++L G  +      +  
Sbjct: 329 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 386

Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +   + +    + +   ++        V++K S       +I
Sbjct: 387 NKEKITHFTNKEDIKNILEKEHGK-TAVLLKGSRGMKLEEII 427


>gi|91070267|gb|ABE11186.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11H7]
          Length = 457

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 119/463 (25%), Positives = 189/463 (40%), Gaps = 13/463 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    D+L  I+    G +       ISIDSR+    + F AIKG ++DGH F+   + K
Sbjct: 5   LLELKDVLGDIKNLGEGEIDSLNFKNISIDSRTCFENDLFIAIKGKNFDGHSFLPEVLNK 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   VV+    +  +   + P + V+D L A  KL +  R +    ++AITGSVGKTTTK
Sbjct: 65  GVKSVVI-KKGMQKLLPDNFPCWVVNDTLEAFQKLTLLIRKKLSIPVVAITGSVGKTTTK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM+   L  + K      ++NN IGV LT+     +    + E+GM  LG+I  L+    
Sbjct: 124 EMVGEVLKKLGKIKLSHSNFNNEIGVGLTILAADKEDKVLVLEMGMRGLGQIENLSKHSE 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAVIT I  AH+      + I  AK EI + L   G + +  +D   E    +     
Sbjct: 184 PDIAVITNIGTAHIGLLRSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGR 243

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  +             +          +   +  +         G+H A N L    + 
Sbjct: 244 VIKVELLNIKDQKGSFKKNDNLRGFYDPLNETILIEENTFKISFEGFHNASNFLFAYAVA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D ++  K   V              L     T+ DESYNA+P S+ A I  L   
Sbjct: 304 KELGIDFESFNKFDFVSLG------GRNKILKSVKTTIYDESYNASPESVNACIKNL--- 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALK-DALPRS 421
                  +  + G M E+GE S+ +H ++  +++  +I   +         +    L   
Sbjct: 355 -IGKPRNKFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCFFICDKKSEKIYTKYLKDK 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   +  +   I  S   GD +++K S      ++I L+
Sbjct: 414 KKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|228472553|ref|ZP_04057313.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228275966|gb|EEK14722.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 421

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 187/433 (43%), Gaps = 23/433 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ D+R       FF ++G ++DG+ F+  A++KGA  VV +     S          
Sbjct: 10  KGVTTDTRKELKDTLFFCLQGENFDGNTFVPLALEKGAKWVVTSDPQWNSEPKA----IV 65

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L AL +LA   R +    IIA+TGS GKTTTKE++   L+         G+ NNH+
Sbjct: 66  VKDTLWALQELATYHRQKLGTPIIALTGSNGKTTTKELIYSVLNQSFNALKTEGNLNNHL 125

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E + 
Sbjct: 126 GVPLTLLRLTFETDIAIVEMGANHPGEIARLCQIADPDFGYITNFGRAHLEGFGSFEGVI 185

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK+E+++ L+K        +D+  +    +    G +  YSF        +    +   
Sbjct: 186 RAKSELYQYLKKDNKCIFFSEDNSLQ----RELLEGYEPTYSFSL---EGREGANLQLSL 238

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +S   V L+    E     IG + A N+   + I        +   + +  + P   R 
Sbjct: 239 LKSIPTVTLEWAGQEFSSALIGNYNATNIAAAMCIGRYFKLSAEAIRRGVEGYIPTNNR- 297

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +         ++ ++YNANP+SM AAI     +       ++ +LGDM E+G  S+ 
Sbjct: 298 --SQFVEKTRGNRVLMDAYNANPSSMHAAIEAFQALPSA---HKVLILGDMKELGAYSER 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L   ++ Y  + V L G +    +    +        +      ++ +      + 
Sbjct: 353 EHQQLVTDIATYPWTAVLLIGENFGRTQTDFLK------FASPAEANSYLAAHPFSDTLF 406

Query: 448 VVKSSNSCGFYRL 460
           +VK S S    ++
Sbjct: 407 LVKGSRSMTLEKI 419


>gi|260550826|ref|ZP_05825033.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
 gi|260406136|gb|EEW99621.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter sp.
           RUH2624]
          Length = 466

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 200/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D HDF+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHDFVAQVAANGCQVAIVEQPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A     +I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DA-----NIAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++  + +  I +  + G  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTTEIREAAKSHHIMSFGTGG-- 257

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   +D  
Sbjct: 258 ---DVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLDDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAQLPLDHIIAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|126695974|ref|YP_001090860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543017|gb|ABO17259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9301]
          Length = 457

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 121/460 (26%), Positives = 197/460 (42%), Gaps = 13/460 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  I+    G +       I IDSR+    + F AIKG ++DGH+F+   + KG  
Sbjct: 8   IKDVLGDIKNLGEGGIDSLNFKNICIDSRTCLKNDLFIAIKGKNFDGHNFLPDVLNKGVK 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV+  + +  +   + P + V D L A  KL +  R +    ++AITGSVGKTTTKEM+
Sbjct: 68  SVVI-KEGMQKLLPDNFPCWVVSDTLNAFQKLTLLKRKKLSIPVVAITGSVGKTTTKEMV 126

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+ + K      ++NN IGV LT+     +    + E+GM  LG+I  L+   +P I
Sbjct: 127 GEVLNKLGKIKLSHANFNNEIGVGLTILATDKEDKVLVLEMGMRGLGQIENLSKYSKPDI 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AVIT I  AH+      + I  AK EI + L   G + +  +D   E    +     +  
Sbjct: 187 AVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDLLLEETLREYWKGRVTK 246

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +         D   +        +     +  +         G+H A N L+   +   L
Sbjct: 247 VELLNIENQNDSFKKDNNLRGFYNPSNKTILIEENIFEISFEGFHNASNFLLAYAVAKEL 306

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D ++  K   V              L     T+ DESYNA+P S+KA I  L      
Sbjct: 307 GIDFESFNKFDFVSLG------GRNKILKSVKTTIYDESYNASPESVKACIKTL----LE 356

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALK-DALPRSIHV 424
               +  + G M E+GE S+ FH ++  +++  +I   +++       +  + L      
Sbjct: 357 KPRNKFFIFGSMQELGEESEKFHKEIFNLINNSDIEKCLFICDKKNKKIYTNYLKDKKKF 416

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  +   I  S   GD +++K S S    ++I L+
Sbjct: 417 LVLNNIKDVPKEINKSTKKGDSILIKGSRSWQLEKIIELI 456


>gi|283850518|ref|ZP_06367806.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
 gi|283574089|gb|EFC22061.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. FW1012B]
          Length = 466

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 128/463 (27%), Positives = 194/463 (41%), Gaps = 14/463 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  D+L A      +G      +  + IDSR++ P   F  + G   DGH F   AV+K
Sbjct: 3   MTLSDILAATGAVGDVGERGNPVIEAVRIDSRAVVPGSLFVCVPGARLDGHHFAAEAVEK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +  +         PV  V D + AL +LA A R R  A ++A++GS GKTT K
Sbjct: 63  GAAAVLADRPLAG--LPEGTPVLLVRDTVAALGRLARAWRERVGARLVAVSGSAGKTTVK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    L  +  T     ++NN IG+PL++     +    + ELG+S  GE+  L  +  
Sbjct: 121 ELTAAILGKVGPTAKNYKNFNNRIGLPLSMLEAGENDALWVMELGISAPGEMAPLASIAE 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AVI  + PAHL     +  +A+ K  +F                + EL  A   A  
Sbjct: 181 PDVAVIHNVGPAHLQALGDVAGVAAEKTFLFR--SLRPGGTALASMDYPELWDAARAAFP 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S                   +    ++L    +EVV    G H A+N+L      
Sbjct: 239 GVRGMSTKGQAAPYRAKYLGAISEGRGRFFLKLDDLELEVVTPLTGGHFAENILAAAAAA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            IL A        L+     E R    R    QG +TLID++YNANP SM+ AI+  ++ 
Sbjct: 299 RILGAGEPEIAAGLATAVMPEQRFFCRR----QGCYTLIDDTYNANPLSMRRAIAAAAET 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
           +       + VLG+M EMG  +++ H  L E  +    + V+  G H  A+ + L R   
Sbjct: 355 AQARP--LVLVLGEMREMGAHAEAEHGKLGEAAAASGANAVFYHGAHAEAVGEGLTRSGY 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +      +T D     +      G V + K S S      +  
Sbjct: 413 AGRFAVVDTPDAFLGALAPMGFGGGVFLFKGSRSMRMEEYLAA 455


>gi|317060168|ref|ZP_07924653.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
 gi|313685844|gb|EFS22679.1| LOW QUALITY PROTEIN: histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 464

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 190/459 (41%), Gaps = 37/459 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +LQ         + +  +  + +DSR +     FFAI+    +G+ ++  A++K
Sbjct: 39  MKLLCQILQ----KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEK 90

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+ +             V  V D +  + +LA   R   K  +IAITGS GKTTTK
Sbjct: 91  GASIVIADHYFEPHE-----RVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTK 145

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    T   +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + R
Sbjct: 146 DIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIAR 205

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT I  +HL      E +  AK E+   L +                   +    
Sbjct: 206 PDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQGHF---------------ITSGDD 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I      G     +           +       Q +  +      G H   N  M + + 
Sbjct: 251 IFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYEICLEGKHNVMNAAMGIALA 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++    +   + LS       R +R+     +     I+++YNA+P SM AA+  L ++
Sbjct: 311 EMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE----YINDAYNASPISMFAALDSLEEM 366

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +    AVLGDM E+GE    FH ++ +     ++  V L G  +      LP    
Sbjct: 367 KAERK---FAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEG 423

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +++ E+ + +  +++        V++K+S       +I 
Sbjct: 424 LYHFESKEAIREYLRKFSEK--TVLIKASRGMKLEDIIE 460


>gi|17227532|ref|NP_484080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
 gi|17135014|dbj|BAB77560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Nostoc sp.
           PCC 7120]
          Length = 451

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 130/473 (27%), Positives = 205/473 (43%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+   T + L++ +    + I         +GI  D+R I P E F A +G  +DGH+FI
Sbjct: 1   MSWSVTLNQLIEVLLARPVNISEAALTQVSSGIQTDTRMIKPGEVFLAFRGEKFDGHEFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+ D      +  +PV  V + L A  KL    R R    +I +TGSV
Sbjct: 61  SSAIARGAIAAIVDDDY----ENPGLPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +        G+YNN IGVP TL  +  + D+ + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTKGNVLKTYGNYNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP I VIT +  AH+      E IA AK E+   + K     LN+D+       A
Sbjct: 177 LAQIARPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNPLLMATAA 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K  +  + T    G                        ++   + +     G H A N L
Sbjct: 237 KFWSGEVLTYGLSGGD------------VQGSLVDNAIVEVAGLRLPLPLPGRHNATNYL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  +  +    +S          R +         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGIEWSSLQAGVS----VNMPTGRSQRFSLPNDVLILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+      +   IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   + + +  GD ++ K+++S G  R+++ L  EF
Sbjct: 398 RSA-EGIPSECFATHADLVARLTTFVQGGDRLLFKAAHSVGLDRVVSQLRAEF 449


>gi|75908850|ref|YP_323146.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
 gi|75702575|gb|ABA22251.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anabaena variabilis ATCC 29413]
          Length = 451

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 128/473 (27%), Positives = 202/473 (42%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV---NGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M+   T + L++ +      I         +GI  D+R I P E F A +G  +DGH+F+
Sbjct: 1   MSWSVTLNQLIEVLLARPFNISEAALAQVSSGIQTDTRIIKPGEVFLAFRGEKFDGHEFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+  GA   +V+ D      +   PV  V + L A  KL    R R    +I +TGSV
Sbjct: 61  QTAIANGAIAAIVDDDY----ENPGFPVLQVSNTLEAYQKLGRWWRDRFDIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +    +   G++NN IGVP TL  +  + D+ + E+ M   G+I  
Sbjct: 117 GKTTTKELIAAVLGTKGNIHKTYGNFNNEIGVPKTLLELNAEHDYAVIEMAMRGRGQIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT +  P I VIT +  AH+      E IA AK E+   + K     LN+D+        
Sbjct: 177 LTQIANPTIGVITNVGTAHIELLGSEEAIAEAKCELLAEMPKDSVAILNHDNPLLMATAG 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K  +  + T    G                        ++   + +     G H A N L
Sbjct: 237 KFWSGEVLTYGLSGGD------------IQGSLVDNAIVEVAGLRLPLPLPGRHNATNYL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  +  +    +S          R +         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLGIEWSSLQAGVS----VNMPTGRSQRFSLPNDVLILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+      +   IAVLG M E+GE S   H  + E +    +    V + G    A+ 
Sbjct: 341 QLLADTPGKRK---IAVLGAMKELGERSAQLHQRVGETVRNLKLDGLLVLVDGEDAEAIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            +    I      T   L   + + +  GD V+ K+++S G  R+++ L  EF
Sbjct: 398 KSA-EGIPSECFATHADLVARLTTFVQGGDRVLFKAAHSVGLDRVVSQLRAEF 449


>gi|255038275|ref|YP_003088896.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
 gi|254951031|gb|ACT95731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dyadobacter
           fermentans DSM 18053]
          Length = 434

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 117/433 (27%), Positives = 189/433 (43%), Gaps = 22/433 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R I     FFA+KG  +DG+ +   A+QKGA   VV+   VA+           +
Sbjct: 18  VSTDTRQITDGCIFFALKGDKFDGNQYAAEALQKGAAYAVVDDPTVAN----GDRFLLFE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R      ++A+TGS GKTTTKE++   LS    TYA  G+ NNHIGV
Sbjct: 74  DGLTALQDLARHHRKTLDIPVVALTGSNGKTTTKELIAKVLSMKFNTYATRGNLNNHIGV 133

Query: 150 PLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           PLT+  +     +  + E+G +H  EI  L+ + +P   +IT I  AHL  F G+  I  
Sbjct: 134 PLTVLSIDPAKHEMAVIEMGANHQQEIALLSSIAQPTHGLITNIGKAHLEGFGGVSGIIK 193

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+F+ L K                        +    +FG+      +         
Sbjct: 194 GKGELFDYLSKKKGTVFVNSTQDV-------IMDMVSKRRAFGEIVFYCSENSPINPTLI 246

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +    V        V  H  G +   N+   L +      +   A +A++ + P      
Sbjct: 247 EENPNVVFSNGGKTVTTHLPGRYNFDNICAALAVGKHFGVEDADAYEAVATYEP----DN 302

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                + +G  T+I ++YNANP+SM AA++   ++    +   I +LGDM E+G+ +   
Sbjct: 303 NRSQIVKKGTNTVIMDAYNANPSSMAAAVANFGRMEAARK---ILILGDMFELGDAAPEE 359

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H+ L + ++      V L+G  +     ALP+    +Y      L  +I  +  +    +
Sbjct: 360 HLALGKQIAGEKFDVVILAGKLMQHALPALPK---AYYFPDKFSLHNWIMDNPQENTHFL 416

Query: 449 VKSSNSCGFYRLI 461
           +K S       ++
Sbjct: 417 IKGSRGMSLETVL 429


>gi|51892345|ref|YP_075036.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856034|dbj|BAD40192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 521

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 122/518 (23%), Positives = 196/518 (37%), Gaps = 60/518 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+T  ++     G      P   V+GI+ DSR + P + F A+ G   DGHDF   A
Sbjct: 1   MTQLFTAAEIAALTGGRLAAGDPNAGVSGIAWDSRLVRPGDCFVALAGERADGHDFAAQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGK 119
             +GA  V+    + A        V    D L  L +L +A R R     ++ ITGSVGK
Sbjct: 61  AARGAACVLAARPVPAG----DAAVVVCPDPLLGLGRLGLALRSRHPHLRVVGITGSVGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKEM    L+   + +   G+ N+ +G+P +LA +  + +  + E+GM   GEI +L 
Sbjct: 117 TTTKEMTAAVLAERFRVFRTEGNLNSEVGLPASLAGLTDEHEAAVLEMGMRAPGEIAYLA 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP + V+T +   HL      E IA AK+E+   L   G   LN DD     + A +
Sbjct: 177 SIARPQVGVVTNVGITHLELLGTQENIALAKSELVRALPPDGVAVLNADDPRVRAMAAAT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A       +  ++ +           + ++          +   +      MAQ   + 
Sbjct: 237 PARVWFYGLTAREAADDAAAAPVATGTAGEAGTPGGRVVGWVTAENARPDGPMAQRFRLV 296

Query: 300 LGIVSILTA--------------------DVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +                               ++A++               +  G  
Sbjct: 297 CHLGEADVRLPAPGPHNLLNALAAAAVGLSQGLDLEAVARGLSLFRNAGNRLRLVEAGGV 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D++YNA PAS+ AA+ V+   +   EGR +AVLGDM E+G L    H  +  V +  
Sbjct: 357 RILDDTYNAAPASVIAALEVMRGFAG-PEGRCVAVLGDMYELGALEVEGHRQVGMVAARL 415

Query: 400 NISHVWLSGFHVLAL---------------------------------KDALPRSIHVHY 426
               +   G     +                                      R   VH+
Sbjct: 416 T-DELVAVGQLGRHIAEGARAALAGAGGGSAGAGFRGGEGPPEGQGPVAGGGTRLREVHH 474

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                G   +++  L  GD V+VK S       ++  L
Sbjct: 475 VPDNAGAIAWLKERLRPGDTVLVKGSRGMKMEEIVQAL 512


>gi|229918547|ref|YP_002887193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
 gi|229469976|gb|ACQ71748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Exiguobacterium sp. AT1b]
          Length = 434

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 114/463 (24%), Positives = 184/463 (39%), Gaps = 30/463 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L             +  V  ++ DSR       F  I G   DGHD+I  A
Sbjct: 1   MEQL-TVQKLASWFGMDLH---DERLVERVATDSRDANEAGLFVPIVGARVDGHDYIEAA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V+KGA +              ++ V  V   + AL   A          ++AITGS GKT
Sbjct: 57  VEKGAIVTFWEEGRPQ---PDNLVVIPVKSTVEALQTAAARYLEEINPLVVAITGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TK+M+ + L    KT+   G++N+ +G+PLT+ RMP D +  + E+GM+  G+I  L+ 
Sbjct: 114 STKDMVAVVLEEKFKTHKTAGNFNSDVGLPLTVLRMPRDTEVAVLEMGMNGFGQIETLSK 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L +P +A +T I  +H     G   IA AK EI  GL+  G + ++ D+           
Sbjct: 174 LAKPDVAFVTNIGESHGEQVGGRTGIAKAKLEIKAGLKADGRLIVDADEPLLS------- 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G     D       +  E ++     +          +G H  +N    +
Sbjct: 227 --------GQGYRVGYDETADGKIEVIETTFDASIFKYNGDLYELKVLGAHQIRNAAYAI 278

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   D     + L        R ++           LI+++YNA+P SM AAI  +
Sbjct: 279 ACGLAFGLDHAMIQRGLDRIKLTSMRMEKQMFGEAH----LINDAYNASPTSMIAAIETI 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +   + VLGDM E+G   Q  H  +        ++   L G     + D +  
Sbjct: 335 KSLEGFSKR--VLVLGDMYELGADEQMQHEQVGG-AVTSPVTDCILVGDKAKWIADGIQD 391

Query: 421 S-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           S ++V    T++     +        VV++K+S      RL+ 
Sbjct: 392 SRVNVKMVPTVEEAKALLHHYQRPDTVVLLKASRGLALERLVQ 434


>gi|262283025|ref|ZP_06060792.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261277|gb|EEY79976.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 456

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 203/470 (43%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +         P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAE------APYILVDDVLKAFQCLAKYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSETAIAQAFSKLELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++ SL   D +++K SNS    +L+  L +
Sbjct: 405 RVHYFVKNDEKDQFEQLTKAVRESLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|298386757|ref|ZP_06996312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
 gi|298260431|gb|EFI03300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 1_1_14]
          Length = 432

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 192/435 (44%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +V P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIVEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L K     +        L+   + A G+  I    +                 
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    GKS +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G  S + H
Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       VWL G    A + +            +  +   +++    G  +++
Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      +++ L
Sbjct: 418 KGSNGIKLSSVVDYL 432


>gi|315225027|ref|ZP_07866845.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
 gi|314945002|gb|EFS97033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga ochracea F0287]
          Length = 444

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 187/441 (42%), Gaps = 21/441 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+S D+R+I P   +FA+KG  ++G+ F   A+ KGA   V++                V
Sbjct: 14  GVSTDTRNITPNSIYFALKGASFNGNTFAQEALAKGACYAVIDDPAYHIADKT----LLV 69

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L +LA   R + K  +I ITGS GKTTTKE++   LS      A  G+ NN+IG
Sbjct: 70  DDVLTTLQQLATYHRRKLKTLVIGITGSNGKTTTKELIKSVLSQQLNIVATQGNLNNNIG 129

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H GEI FL  +  P    IT+I  AHL  F   E +  
Sbjct: 130 VPLTLLTIKPETDIAIVEMGANHPGEIAFLCSIAEPDYGYITSIGKAHLEGFGSFEGVIK 189

Query: 209 AKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQL 260
            K E+++       TI  N D+   E L    +         G+        ++    Q 
Sbjct: 190 TKGELYDYLKTHHKTIIANADNPITEALLENYNNVYSFGVGEGVNVSVQCLSTQPVKIQF 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 +        ++G +            + N    +            + KA+   
Sbjct: 250 ADSSLQTTTEGFPANIEGFTDTPTVATSHLVGSYNFTN-IAASVAFGRYFKLSTKAIQKG 308

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                        L  G  T++ ++YNANP+SM AAI  L  ++       + +LGDM E
Sbjct: 309 IESYIPQNNRSQLLQWGSNTVLLDAYNANPSSMTAAIDNLLSMNSFPNK--VLILGDMFE 366

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+ +   H  + + L+ +  + V+L G +    K   P+       ET +      ++ 
Sbjct: 367 LGDYATQEHQSIVDKLTEHQWAGVYLIGKNFKQTKAPYPQ------YETFEEFREVFKNL 420

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
                ++++K S      RLI
Sbjct: 421 SFQDSLILIKGSRGMALERLI 441


>gi|333029695|ref|ZP_08457756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
 gi|332740292|gb|EGJ70774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Bacteroides coprosuis
           DSM 18011]
          Length = 436

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/434 (27%), Positives = 203/434 (46%), Gaps = 17/434 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG ++DG+ +   A++ GA  V+V+   V   G        V 
Sbjct: 17  ITTDSRNCPKGSLFIALKGENFDGNLYASKALENGAAFVIVDNPEVVIEGDD--RYILVH 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL ++A   R   K  IIAITG+ GKTTTKE++   L    KT+   G+ NNHIGV
Sbjct: 75  DSLHALQQMANYHRQMLKTPIIAITGTNGKTTTKELIANVLLKKYKTHYTQGNLNNHIGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M    +  + E+G +H GEI+ LT +V P   +IT +  AHL  F  +E +   
Sbjct: 135 PLTILSMTASDEMAVIEMGANHPGEIKDLTRIVLPDYGLITNVGKAHLEGFGSLEGVIRT 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++ L++        +     L+K       + T  +  +S +   ++         
Sbjct: 195 KSELYDYLKEKKNGTAFINFDDSILMKQAEGISHLITYGT-SESTSVCGKIDDSSLTLSL 253

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            W +  L      +    IG +   N+L  + I       ++   +AL  + P+  R + 
Sbjct: 254 EWYKPTLSNNIQRINTQLIGDYNLSNILAAITIGVFFKVPIEDIKEALEQYTPQNNRSQF 313

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   NQ    LI ++YNANP SM AA++    +       ++ +LGDM E+G+ S   H
Sbjct: 314 KKTESNQ----LIIDAYNANPTSMLAALNNFCNLKAE---HKMVILGDMRELGKDSLLEH 366

Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + + L+ +  I  V L G            +    + + ++ +  ++ S+ +    ++
Sbjct: 367 QKIIDFLTKHKDIEKVLLVGDEF------CKTNHPYTHFKDVNEVKNYLVSNPITDHTIL 420

Query: 449 VKSSNSCGFYRLIN 462
           +K SN    + L++
Sbjct: 421 IKGSNGIRLFTLVD 434


>gi|308048064|ref|YP_003911630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
 gi|307630254|gb|ADN74556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ferrimonas balearica
           DSM 9799]
          Length = 455

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 133/471 (28%), Positives = 201/471 (42%), Gaps = 25/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T   L  A+ G   G      V+ I  D+R++A  + F A+ G  +DGH+F+  A
Sbjct: 1   MIPV-TLSTLADAVGGTLNG--ADLMVSRIGTDTRALAEGDLFLALVGDRFDGHEFVAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  +VV+  +       ++P   V+D L AL ++    R       +AITGSVGKT
Sbjct: 58  EASGAAALVVSRPV-----DSALPQILVEDTLLALGQMGAWLRRELAPRCLAITGSVGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM     + +  T A  G+ NN IGVP+TL  +  +  F + ELG +H GEIR+ + 
Sbjct: 113 SVKEMTAAIFAQVGPTLATRGNLNNTIGVPMTLLELTPEHRFAVIELGANHAGEIRYTSS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L  PH AVI  I  AHL  F GIE +A AK+EI+E L + GT  +N DD +   L  +  
Sbjct: 173 LALPHAAVINNIRGAHLEGFGGIEGVARAKSEIYEHLGEAGTAIVNLDDEWAPWLLERLG 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                T  S G +      L       +       L  +    V   +       +   L
Sbjct: 233 DQNRFTYSSRGPAD-----LWASALSRDADGCYHFLLHRGEAEVLVRLPLPGRHQVDNAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++ +    +  +  S          R +     G   LID+SYNAN AS  AAI ++
Sbjct: 288 AAAALASTAELSLEQIASGLAQAPTVAGRTQMTALSGEVMLIDDSYNANAASTMAAIDLM 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +G  + V GDM E+GE +++ H  +        I  +   G        A   
Sbjct: 348 A----ERDGSSLLVFGDMGELGEEAEAEHRTVGRYAGEKGIDRLLTVGTLSRF---AAQE 400

Query: 421 SIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLEE 467
                +      L   + + L         V++K S S     +   L E+
Sbjct: 401 HDAARHFGDQAELLPTLMTELAALPRP-VTVLIKGSRSARMENVAKALREQ 450


>gi|146299078|ref|YP_001193669.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium johnsoniae
           UW101]
 gi|146153496|gb|ABQ04350.1| alanine racemase [Flavobacterium johnsoniae UW101]
          Length = 822

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/464 (22%), Positives = 190/464 (40%), Gaps = 12/464 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQK 63
               L+  +     G     FV+ ISIDSRS+       F A+ G + D H +I   ++K
Sbjct: 4   NLKSLIPVLNAEWTGSDTDIFVDHISIDSRSLQNGPQTLFIALSGANNDAHLYIAELIEK 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G     V    +          F V + L AL +LA   R      II +TGS GKT  K
Sbjct: 64  GVQNFAVQ--YIPENVKGKANFFVVKNTLKALQELAAYYRDLFDFPIIGLTGSNGKTIVK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ +GVPL++  +    + GIFE G+S + E+  L  +++
Sbjct: 122 EWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINEKHNLGIFEAGISTVNEMVNLEKIIK 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+I V+T I  AH   F  + +  + K  +F+             D       A+     
Sbjct: 182 PNIGVLTNIGSAHDEGFENLTQKINEKLLLFKKSAVIIYQKNELVDKCLLDFSAQYPLEN 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                      +AD  + K +  ++ + ++ Q + +   +          +N +  L ++
Sbjct: 242 RALFSWSFADASADVFILKKETKNDSTTIKYQYKDEIFNLEIPFSDSASIENAISCLLVL 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       + + +P      R          +LID+SY+++  S+K A+  L   
Sbjct: 302 LHFEYDFTIIQNRMEMLYPV---EMRLEVKNGIHNCSLIDDSYSSDFQSLKIALDFLESQ 358

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             +       +L D+ + G  ++  +  +A+++S   I+ V   G  + + +D  P S  
Sbjct: 359 KKNASK--AVILSDIFQSGFSNEELYSKVAQLISDNKINRVIGIGTTISSFQDKFPNS-- 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +        I++   + + +++K + S  F  +++LL E+
Sbjct: 415 -TMFQNTAAFIAEIENLNFNNETILIKGARSFQFEEIVSLLEEK 457


>gi|163854998|ref|YP_001629296.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella petrii DSM 12804]
 gi|163258726|emb|CAP41025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bordetella petrii]
          Length = 943

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 120/439 (27%), Positives = 189/439 (43%), Gaps = 21/439 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+RSI   E F A+ G  +DGH ++  A   GA   +V   +  +    S+P   + 
Sbjct: 506 LSTDTRSIGANEVFLALTGEQFDGHAYLAQAESAGACAAIVAHPVDGA----SLPQLVLG 561

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNH 146
           D   AL ++  A R R    +I + GS GKTTTKEM+              A  G++NN 
Sbjct: 562 DTRQALQRIGAAWRARYSLPVIGVAGSNGKTTTKEMIAAILADWQGEAGRLATAGNFNND 621

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVPLTL R+       + ELGM+H GEI  L  L  P +A++T     H      +E +
Sbjct: 622 IGVPLTLLRLRAQHRAAVIELGMNHPGEIAVLAALAAPSVALVTNAQREHQEFMHSVEAV 681

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A       E L + G      DD    + +A+    G + +  FG     D    +    
Sbjct: 682 AQENGASIEALPEDGVAVFPGDDPHCGIWEAQ---AGARRVLRFGLQPGLDVYAEQIDAT 738

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +   V     S ++V    G H  +N L  +       A +  A++ALS F    GR
Sbjct: 739 PHDTRCRVVTPAGSADLVLPVAGLHNLRNALAAIAAALAAGAPLAGAVRALSAFSAVAGR 798

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               +         LID++YNANP S++AA+ VL+++       R  VLGDM E+G+   
Sbjct: 799 ---MQRQTLDDGTILIDDTYNANPDSVRAAVDVLARLPA----PRALVLGDMGEVGDNGP 851

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + H ++ E    + I  ++  G        A           ++D +   ++        
Sbjct: 852 AMHREVGEYARQHGIDTLYTLGEASRDSAAAFGPG--ALACASVDEIVAALRG-ARP-AS 907

Query: 447 VVVKSSNSCGFYRLINLLL 465
           ++VK S      R++ +L+
Sbjct: 908 LLVKGSRFMRMERVVKVLV 926



 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 90/452 (19%), Positives = 157/452 (34%), Gaps = 41/452 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +A  + F A  G   DG  FI  A+ +GA  V+        + +    V  V D+ 
Sbjct: 31  DSRDVAAGDVFVACSGGSADGRAFIGQALARGAAAVLCQAPAPGDV-ATDARVRAVPDLR 89

Query: 93  GALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             L +LA     R     +++A+TG+ GKT+  + +   L+   K    IG+    +   
Sbjct: 90  ELLGELADDWYGRPSAALSVVAVTGTNGKTSCVQWVAQTLTDAGKPCGSIGTLGAMLPDG 149

Query: 151 LTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            TL       D                    L  S +G  +     VR  +A  T +   
Sbjct: 150 RTLGGELTTPDVLSMHRILAAMRAAGAQAVALEASSIGIEQGRLDGVRIAVAGFTNLTRD 209

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E    AKA +F+       +    D +   LL+     L +       +   
Sbjct: 210 HLDYHGSMERYEQAKARLFQWPGLAAAVINADDAAGERLLRTLPRGLALGYTQ---QDVP 266

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
             FQ R+ +  +      +       +VV   +G H   N+L+  G++  L   +    +
Sbjct: 267 TAFQARELQATAHGQVFTLATPDGEAQVVTSLLGRHNVSNLLLVAGVLYKLGWPLAQLAR 326

Query: 316 ALSVFHPKEGRGK-----RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           AL+   P  GR +       R     G   L+   Y+  P S+  A++ L  ++    GR
Sbjct: 327 ALAATRPVAGRLQVVSPLPLRALGATGRGPLVVVDYSHTPDSLARALAALRPVADARGGR 386

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA----LKDALPRS 421
            + + G     G    +        ++      + +S     G    A    +   +PR 
Sbjct: 387 LVCLFG----CGGERDTGKRPEMGRIAADLADKITVSSDNPRGEDPAAIIAQIVAGIPRG 442

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          +    +    DVV++  K 
Sbjct: 443 ARLQVEADRARAIMQTIWAADPDDVVLLAGKG 474


>gi|224536424|ref|ZP_03676963.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521979|gb|EEF91084.1| hypothetical protein BACCELL_01298 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 432

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 190/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG +++G+ F   A++ G+  V+++    A  G        
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFAAKALESGSAYVIIDEAEYALAGDSH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++ L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHI
Sbjct: 72  VNNCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELMAAVLSKKYNVLYTQGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLRAEHDLGIIEMGASHPGDIKELVDITEPEYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L +     +         L+  +  L + +  S  +               
Sbjct: 192 KTKGELYDYLRERKNSTIFIHHDNL-YLRNMARGLNLISYGSADELYVNGHVTGNSPYLI 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                     G+S EV    IG +   N L  + I        +    AL  + P+  R 
Sbjct: 251 --FEWRAGKDGESHEVKTQLIGEYNFANALAAVTIGHFFEVASEKIDAALREYTPQNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM+A+IS    +    +   + +LGDM E+G+    
Sbjct: 309 QLKQTADN----TLIIDAYNANPTSMQASISNFRNMEVENK---MLILGDMRELGKDGPK 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A+ L+      V L G    A K   P             +   +Q S   G  +
Sbjct: 362 EHQKIADFLAECGFKDVMLVGEQFAAAKHNFPT------YPDAPAVIEVLQKSKPHGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +I+ L
Sbjct: 416 LIKGSNGIKLSTVIDYL 432


>gi|317064993|ref|ZP_07929478.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
 gi|313690669|gb|EFS27504.1| histidinol-phosphatase [Fusobacterium ulcerans ATCC 49185]
          Length = 448

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 111/462 (24%), Positives = 197/462 (42%), Gaps = 36/462 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L+   D  +     S+    +  +  + +DSR +   + FFAI     +G+ +I   
Sbjct: 21  MKILFNILD--KIFGIKSVVEKNE--IGHVVMDSRKVQKGDLFFAI----NNGNSYIDDV 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +     +       V  V+D +  + +LA   R      +IAITGS GKT
Sbjct: 73  LEKGAALVIAD-----NYKGNDKRVIKVEDTIKCMQELAKKYRHTLDVKVIAITGSNGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK+M+   LS    T   +G+ NNHIGVP T+ ++    +  + ELGMS  GEI  L+ 
Sbjct: 128 TTKDMIYSVLSQKYVTAKTMGNLNNHIGVPFTILQLDEKCEAAVLELGMSGFGEIDLLSS 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P I VIT I  +HL      E +  AK E+ + +     I    DD F + L     
Sbjct: 188 IVEPDIGVITNIGDSHLEFLKTRENVFKAKTELVKYVSAENLIV-FGDDPFLKDL----- 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                     G   N ++Q++ +    E    E++ +    +      G H   N  M +
Sbjct: 242 -----NGIKVGYENNNNYQIKNFTDSDEGLSFEMEEK----KYTVSLNGKHNCINTAMAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   +    +     L        R ++      +     I+++YNA+P S+  ++   
Sbjct: 293 VIGKKMGVSYEEISNGLKNLELTPMRFQKIE----KENIIYINDAYNASPISVSFSLETF 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            ++  + +  +I VLGDM E+GE    +H ++ E   + +   ++L G  +      +  
Sbjct: 349 DKL--YNDALKITVLGDMLELGEKEIEYHENIIEKALIIHTDKIYLYGERMAKALKVIQG 406

Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +   + +    + +   ++        V++K S       +I
Sbjct: 407 NKEKITHFTNKEDIKNILEKEHGK-TAVLLKGSRGMKLEEII 447


>gi|15639377|ref|NP_218826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189025619|ref|YP_001933391.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|6093451|sp|O83401|MURF_TREPA RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3322664|gb|AAC65370.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018194|gb|ACD70812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine [Treponema
           pallidum subsp. pallidum SS14]
 gi|291059776|gb|ADD72511.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Treponema pallidum subsp. pallidum str. Chicago]
          Length = 459

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 208/475 (43%), Gaps = 29/475 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L +F ++  A+QG  +         +G+S DSR++ P++ F  ++G H DGH F+  A+Q
Sbjct: 2   LLSFDEVCAAVQGARVCDARGARGFDGVSFDSRAVVPRDLFIPLRGAHVDGHTFVEEALQ 61

Query: 63  KGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITG 115
           KGA   +++       + VA           V D L AL  LA     +  A I I ITG
Sbjct: 62  KGAVATLIDQRYPHAGEYVAWCTRFGAACIAVHDTLRALQDLASFYCKKFPALIRIGITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTT KEM     S   +  A  G+ N+ IG+P +L  +  + + GIFELGM+  GE+
Sbjct: 122 SSGKTTVKEMARAVFSERYRVVATPGNLNSEIGLPQSLFFVRAEHEVGIFELGMNRRGEM 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L  ++ PH A+IT +  AH+      + IA  K EIF   + T        D  + + 
Sbjct: 182 RTLAQILVPHYAIITNVGCAHVGILGTQQAIAEEKKEIFS--QFTEHSVGFVPDDAYRVF 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +      +      G+    +          ++     ++  +   +     G H A+N
Sbjct: 240 LSNIPYGRVVVYDQGGRGLATE--------VIDEGLRGSRVLYQGRWIRVPLPGVHNAKN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + + +    +   + +    P  GR             T + + YNANP SM A
Sbjct: 292 ALAVIALAAQVGLPAEEIQRGMERVKPPFGRSHVV-----CASLTFLLDCYNANPDSMAA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-LAL 414
           A+ + + IS   +   + VLGDM E+G  +   H  +  + +  +   V++ G     A+
Sbjct: 347 ALHLCAHISAVSK---VYVLGDMGELGVTAAEAHYRVCVLAAASDARAVYVFGPEFCRAV 403

Query: 415 KDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +        V+    E +  L   + + L  GD V+VK S S    RL  LL +E
Sbjct: 404 RKVSWGRKRVYAFALEELSALQETLDAQLRRGDFVLVKGSRSVALERLEPLLRKE 458


>gi|29349052|ref|NP_812555.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340959|gb|AAO78749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 432

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 117/435 (26%), Positives = 191/435 (43%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L K     +        L+   + A G+  I    +                 
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    GKS +V    IG +   N L  + I      +     +AL+ + P+  R + 
Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G  S + H
Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       VWL G    A + +            +  +   +++    G  +++
Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      +++ L
Sbjct: 418 KGSNGIKLSSVVDYL 432


>gi|299139514|ref|ZP_07032688.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
 gi|298598442|gb|EFI54606.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX8]
          Length = 463

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 125/468 (26%), Positives = 204/468 (43%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +   I              G SIDSR+I   E FFA++G   DGHD++  A+  G
Sbjct: 3   LTLGQIADWIHAEG-DFDSTALAQGYSIDSRTIGAGELFFAVRGERVDGHDYVETALADG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   VV+   +         +  V D     VL ++ KLA   R      II +TGS GK
Sbjct: 62  AVAAVVSMRWLKPATVEEGKLLRVPDEDEDCVLQSMQKLANRVRREWGKRIIGVTGSAGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE +   LS+        G+ NN  G+PL L ++  + +  + E+GM+H GEIR L 
Sbjct: 122 TTTKECIAQVLSAKFHVLKSEGNLNNGFGMPLQLLKLEPEHEVAVIEMGMNHAGEIRALA 181

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +  P  AV++ +AP HL +F  GIE IA AK E+ E L   G   LN DD         
Sbjct: 182 KIAEPDWAVVSNVAPVHLEHFPDGIEGIARAKYELVEALPADGIAILNGDDERVAAFGKG 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +      G +  A   +   +   + +   V + G+  ++    +G H   N L 
Sbjct: 242 MRGRTVLYGTLPGLTVRA---VEIEEAGLDGTRFRVGIVGRVQKIHLRLMGRHNVLNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +      D+     AL    P E RG+            +I++ YN+NP +++A + 
Sbjct: 299 AVAVGLQSGIDLKDCCLALEQMRPTEKRGEVIERHG----AKIINDCYNSNPRALEAMVE 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L +        RI + G+M E+G    + H +    +++  +  V        +L +  
Sbjct: 355 ALRKTKATR---RIVMAGEMLELGPEGAALHRECG--IAMAGMDVVVGVRGLAASLVEGA 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +  ++ ET +    +++ +L +GDVV++K+S      + +  L 
Sbjct: 410 ESEGVEANFVETPEAAGEWLRENLREGDVVLMKASRGVRLEKALAGLE 457


>gi|298531029|ref|ZP_07018430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509052|gb|EFI32957.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 462

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 118/464 (25%), Positives = 191/464 (41%), Gaps = 18/464 (3%)

Query: 7   FHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +  +A+QG + +  +    VN +  DSR   P + FF ++G   DGH F   A  +GA
Sbjct: 5   LGEAARAMQGTADLQGLENAPVNAVRTDSRQTGPGDLFFCLQGTRSDGHSFAGQAADRGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V + D+ +     + PV  VDD L AL +L    RL++   ++ ITGS GKTTTKE+
Sbjct: 65  LAIVAHRDLGSIQ---NTPVLAVDDTLKALGRLGRHWRLKAGPRVLGITGSAGKTTTKEI 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L +         ++NN +G+PL+L     D DF I ELG+++  ++  L  ++ P 
Sbjct: 122 LAEVLKTRFTVGKNHKNWNNQLGLPLSLLMQKGDEDFWIMELGINNTTDMDELGEILLPD 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+I  + P HL     +  +A AKA + + L      F+N D    +        L   
Sbjct: 182 AALILNVGPCHLEGLGDVSGVARAKARLLDYLRAEHRAFINLDYPDLKREAGARPDLNTT 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S       D +       S  +   + L  + +       G H  +N+     +   
Sbjct: 242 WFSS------RDPEADCRVSHSRDNLFVLNLNEEEIPFHAPVQGAHFCENLAAIWAVALE 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D     L      E R     C    G +T+ID+SYNANP SM+AA+     ++ 
Sbjct: 296 YGMQPDEIQAGLEKSSLPEQRM----CISRSGDWTIIDDSYNANPMSMQAALETARSLAS 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--H 423
              G  + VLGDM E+G      H DL   L     + ++ +G ++  +   +       
Sbjct: 352 --GGDLVLVLGDMAELGRDEARAHRDLGRSLCAGAFTALFYNGDNLEHVLSGMNGEGSRK 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            H  + +               V++ K S   G    +      
Sbjct: 410 AHKIKDVSSFLSAHDKLGCRHGVILFKGSRRAGMENFVQAFKAR 453


>gi|257462513|ref|ZP_05626925.1| histidinol-phosphatase [Fusobacterium sp. D12]
          Length = 426

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 109/459 (23%), Positives = 190/459 (41%), Gaps = 37/459 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +LQ         + +  +  + +DSR +     FFAI+    +G+ ++  A++K
Sbjct: 1   MKLLCQILQ----KRFSHLKELSIQNVVMDSRKVVAGSLFFAIQ----NGNRYVSEALEK 52

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+ +             V  V D +  + +LA   R   K  +IAITGS GKTTTK
Sbjct: 53  GASIVIADHYFEPHE-----RVISVKDTVLFMQELAAEYRSFLKTKLIAITGSNGKTTTK 107

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS    T   +G+YNNHIG+P T+  +    +F + E+GMS  GEI  L  + R
Sbjct: 108 DIVYAILSKTFPTKKTLGNYNNHIGLPFTILNLEEGDEFAVLEMGMSSFGEIDALGKIAR 167

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT I  +HL      E +  AK E+   L +                   +    
Sbjct: 168 PDYGIITNIGDSHLEFLKTRENVFKAKTELLPYLPQGHF---------------ITSGDD 212

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I      G     +           +       Q +  +      G H   N  M + + 
Sbjct: 213 IFLKKVSGVHVGYEEGNDYRIVSYRKKERMTSFQVRGKDYEICLEGKHNVMNAAMGIALA 272

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++    +   + LS       R +R+     +     I+++YNA+P SM AA+  L ++
Sbjct: 273 EMIGMKPEEIQRNLSQIELSPMRFERFEYRGTE----YINDAYNASPISMFAALDSLEEM 328

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
               +    AVLGDM E+GE    FH ++ +     ++  V L G  +      LP    
Sbjct: 329 KAERK---FAVLGDMLELGEREIEFHKEVIQKAMSCHLQAVLLYGTRMKLALHELPFHEG 385

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +++ E+ + +  +++        V++K+S       +I 
Sbjct: 386 LYHFESKEAIREYLRKFSEK--TVLIKASRGMKLEDIIE 422


>gi|296117534|ref|ZP_06836118.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
 gi|295969265|gb|EFG82506.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium ammoniagenes DSM 20306]
          Length = 511

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 132/516 (25%), Positives = 203/516 (39%), Gaps = 58/516 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++   + G       P   V G +  DSR +AP   F    G   DGHDF  
Sbjct: 1   MIDL-TLKEIADIVGGSLDSVDDPDARVTGFVEFDSRKVAPGGLFLCFPGAKVDGHDFAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV------------------------LGA 94
            A+++GA  V+   +       + +P   V                           + A
Sbjct: 60  KAIEQGAVAVLAARE-------VGVPAIVVQPTGRIEGDGANADIYANDADGSAAAVVRA 112

Query: 95  LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ LA     +       +II +TGS GKT+TK+++   L +  +T A  GS+NN IG P
Sbjct: 113 LSDLAHYVTTKLTSEHDLSIIGVTGSAGKTSTKDLIATILRNDGETVAPPGSFNNEIGHP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R  VD  + + EL    +G I+ LT +  P I V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDVDTKYLVAELSARGIGHIKHLTDIATPRIGVVLNVGTAHLGEFGSRENIAIAK 232

Query: 211 AEIFEGLEKTGT---IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            E+ E L          LN DD F   +  ++ A  +    +   +  AD+        +
Sbjct: 233 GELVESLPDVSEGGVAVLNADDPFVAAMAKRTTAKVVTYSSANPPAVGADYYATNITLDN 292

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                          V      + + Q         + + A +     A S+   +    
Sbjct: 293 VARPSFTLHAPGVKPVSVTLQVFGVHQVSNSLAAAAAAIEAGLSVESVADSLSGHRNASA 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ-ISPHGEGRRIAVLGDMCEMGELSQ 386
            R          T+I++SYNANP SM+AAI+ L    S   + R IAVLG+M E+G+ + 
Sbjct: 353 HRMDVHTRADGVTIINDSYNANPDSMRAAIAALGYTTSGRPDARSIAVLGEMGELGDDAI 412

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             H  L   L+ +++  + + G           A  R I+   S  +D     I+  L  
Sbjct: 413 EEHYSLGAELAKFDVHTLIVVGETANGEAMASAAAERGINTMVSRDIDEAIWHIEDVLNT 472

Query: 444 -------------GDVVVVKSSNSCGFYRLINLLLE 466
                         DVV+VK+SN+   + +   LL 
Sbjct: 473 PPAGVEDWSAREMKDVVLVKASNAQRLWLVSERLLN 508


>gi|238754432|ref|ZP_04615787.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
 gi|238707261|gb|EEP99623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Yersinia ruckeri ATCC 29473]
          Length = 431

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 128/444 (28%), Positives = 197/444 (44%), Gaps = 18/444 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +  ++ D+R +     F A+KG  +D HDF  +A+  GAG ++V+  ++     + +P 
Sbjct: 1   MITEVTTDTRKVTAGCLFVALKGERFDAHDFAENAIAAGAGALLVSKRLL-----VDVPQ 55

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL + A   R +    ++A+TGS GKT+ KEM    L          G++NN
Sbjct: 56  IVVKDTRLALGQFAAWVRQQVPTNVVALTGSSGKTSVKEMTAAILRQCGNVLYTAGNFNN 115

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGVPLTL R+  + DF + ELG +H+GEI + T L RP  A++  +A AHL  F  +  
Sbjct: 116 DIGVPLTLLRLTPEHDFAVIELGANHIGEIAYTTDLSRPEAALVNNLAAAHLEGFGSLAG 175

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +A AK EIF GL   G   +N D   +   +       +      G  ++ DF     + 
Sbjct: 176 VAQAKGEIFAGLPANGIAIINADSHDWSHWQTTLAHKQVWRFSPLG-GEDIDFYATDLRI 234

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +     +      + V     G H   N L    +   + AD+D     LS      G
Sbjct: 235 EQQGMNFTLHSPFGHVVVSLPLPGRHNVANALAAAALAISVGADLDAVRVGLSQLKAVPG 294

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R      A       L+D++YNAN  SM AA+ VL+++     G R+ V GDM E+GE +
Sbjct: 295 RLFPLVLADG---KLLLDDTYNANVGSMTAAVQVLAEMP----GYRVMVAGDMAELGETA 347

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  +     L  I  V   G     +  A   S H  +      L   + + L    
Sbjct: 348 EDCHRQVGNAAKLSGIDKVLTVGTLSQLISSA---SGHGEHFHDKSALTARLAALLSQHQ 404

Query: 446 V--VVVKSSNSCGFYRLINLLLEE 467
           V  V++K S S     ++  L E+
Sbjct: 405 VITVLIKGSRSAAMESVVQALQEK 428


>gi|255325348|ref|ZP_05366454.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
 gi|255297913|gb|EET77224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium tuberculostearicum SK141]
          Length = 509

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/514 (25%), Positives = 210/514 (40%), Gaps = 58/514 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+ +   G       P   V G I  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIPL-SIADIAEITGGSLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94
            A+++GA  V+           + +P   V                          V+ A
Sbjct: 60  KAIEQGAVAVLAARP-------VGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ +A     R        I+ +TGS GKT+TK++L     +   T A  GS+NN +G+P
Sbjct: 113 LSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R      F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232

Query: 211 AEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            E+        + G   LN DD F   +  ++ A  +    +   + +A +     +   
Sbjct: 233 GELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQLDD 292

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V     +  +      +   Q         + + + +D  + A ++   +    
Sbjct: 293 VARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASE 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
            R      +   T ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + 
Sbjct: 353 HRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAV 412

Query: 387 SFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSE-------TMDGLFLF 436
           + H  L EVLS Y++ H+   G   ++ A+ +A   R I+   S         ++ +   
Sbjct: 413 AAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRV 472

Query: 437 IQSSL------VDGDVVVVKSSNSCGFYRLINLL 464
             + +         DVV++KSSN+   +R+   L
Sbjct: 473 APAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506


>gi|311741525|ref|ZP_07715349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303695|gb|EFQ79774.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 509

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/514 (25%), Positives = 211/514 (41%), Gaps = 58/514 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL +  D+ +   G+      P   V G I  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIPL-SIADIAEITGGNLDCVSDPDQRVTGFIEFDSRKVTKGGLFLALPGARVDGHDYAE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD------------------------VLGA 94
            A+++GA  V+           + +P   V                          V+ A
Sbjct: 60  KAIEQGAVAVLAARP-------VGVPAVVVKPQGRVTGDAANADIYAHDEDGSAAAVVQA 112

Query: 95  LNKLAVAARLRS----KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           L+ +A     R        I+ +TGS GKT+TK++L     +   T A  GS+NN +G+P
Sbjct: 113 LSDIAREVTRRLTAEQGLDIVGVTGSAGKTSTKDLLATIFRAEGDTVAPPGSFNNEVGLP 172

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            T  R      F + E+    +G IR LT +  P + V+  +  AHL  F   E IA AK
Sbjct: 173 YTALRCDEHTRFLVAEMSARGIGHIRHLTTITAPTVGVVLNVGTAHLGEFGSRENIAQAK 232

Query: 211 AEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            E+        + G   LN DD F   +  ++ A  +    +   + +A +     +   
Sbjct: 233 GELVEALPSAAEGGVAVLNADDPFVAGMAPRTSAKVVYYSANKPPASDAQYYASDIQLDD 292

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V     +  +      +   Q         + + + +D  + A ++   +    
Sbjct: 293 VARPSFVLHAPGTDPLPVKLQVFGKHQVSNALAAAAAAIESGMDPQVVANALSGHQNASE 352

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQ 386
            R      +   T ID+SYNANP SM AAI+ L+   +   + R IAVLG+M E+G  + 
Sbjct: 353 HRMDVRTRRDGVTTIDDSYNANPDSMHAAIAALAYTSAARPDARAIAVLGEMGELGGEAV 412

Query: 387 SFHIDLAEVLSLYNISHVWLSG--FHVLALKDAL-PRSIHVHYSE-------TMDGLFLF 436
           + H  L EVLS Y++ H+   G   ++ A+ +A   R I+   S         ++ +   
Sbjct: 413 AAHRALGEVLSKYHVDHLVAVGDNDNMRAMVEAAQARGINTTISPDVDAAAAAVEDIIRV 472

Query: 437 IQSSL------VDGDVVVVKSSNSCGFYRLINLL 464
             + +         DVV++KSSN+   +R+   L
Sbjct: 473 APAGIEDWTGREAKDVVLIKSSNAQRLWRVAEQL 506


>gi|260556909|ref|ZP_05829126.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
 gi|260409515|gb|EEX02816.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D [Acinetobacter baumannii
           ATCC 19606]
          Length = 466

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYHHILPQGVAIIPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|193078568|gb|ABO13595.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 466

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 199/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L+     +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLAQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|110833455|ref|YP_692314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
 gi|110646566|emb|CAL16042.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase
           [Alcanivorax borkumensis SK2]
          Length = 454

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 135/462 (29%), Positives = 200/462 (43%), Gaps = 22/462 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + Q   G   G      VN ++ D+R I P   F A++G  +D HDF+  A   
Sbjct: 2   MW-LSQIAQWTGGALHGD--DLKVNAVATDTRDIEPGCLFAALRGERFDAHDFLASAKNG 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V  +           V  V D    L +LA     +     +A+TG+ GKTT K
Sbjct: 59  GAIAALVEHEQDCFDN-----VVQVADSRKGLGRLAGGYAAQFGMPRLAVTGNAGKTTVK 113

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L          G++NN +GVPLTL R+  +  + + ELG +  GEI + + L R
Sbjct: 114 EMAATMLGEGTLATN--GNFNNDVGVPLTLLRLRAEHRYAVIELGANAPGEIAWTSSLTR 171

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T +  AHL  F  ++ IA AKAEIF G  + G   +N DDSF +    K+ A G
Sbjct: 172 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFTGCTQGGQAIVNNDDSFADFFAEKARAAG 231

Query: 244 -IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S  +S  A   L        +   E  LQ     V+    G H   N LM    
Sbjct: 232 LTVVRVSMDESTRAGADLYAENIVLHRDSAEFVLQPLGDAVLVPLPGAHQVSNALMACAA 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L A +   +  L+   P  GR        + G  T++D++YNANP S++AAI  L+ 
Sbjct: 292 VRALGASLPQVLPRLAALKPVPGRM----HIQSAGTGTVVDDTYNANPGSVRAAIDWLAA 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                   ++ VLG+M E+G  + S    L E      I+ + +      A   A     
Sbjct: 348 QPA----PQMLVLGEMGELGPQADSLVEALGEYAQQAGIAGLVVM---TGAAAAARGYGE 400

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             + ++       +    L  G  V+VK S S G   ++ LL
Sbjct: 401 AANIAKDYQQAANWSAPVLEQGGTVLVKGSRSAGMEAVVRLL 442


>gi|326385116|ref|ZP_08206785.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326196149|gb|EGD53354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 438

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 129/459 (28%), Positives = 197/459 (42%), Gaps = 27/459 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +  A  G   G  P   V+  SIDSRS  P + F  I     DGHDFI  AVQ GA 
Sbjct: 5   ASQIAAATGGTLHG--PDATVDSASIDSRSARPGQLFVPIVAAR-DGHDFIPSAVQAGAP 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + + +    A   +L      V D   AL  L    R     +++ +TGSVGKT+TK++L
Sbjct: 62  VYLTDR---APDPALGATAVQVADTAEALADLGRFVRAGLPGSVVGVTGSVGKTSTKDLL 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  +T A   S+NN +G+PLTL   P D +  + E+G   +G I  L  +  P +
Sbjct: 119 AGVLGTTFRTAASEKSFNNELGLPLTLLGAPDDTEAVVLEMGARGVGHIAQLCSIASPTV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +   HL  F  ++++A AK E+ E L   G   LN D      + +++ A     
Sbjct: 179 GVLTRVEAVHLEMFGSLDDVAQAKGELVEALPADGLAVLNADHPVVAAMTSRTSA----R 234

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + ++G    AD +        E ++   +     +  V     G H   N L        
Sbjct: 235 VLTYGVDPGADVRATDIVLDDELRASFTLHSPWGTTAVRLGARGEHQVSNALAAAAAGGG 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   ++   + L         G R   +      T+I+++YNANP SM A +S L++I  
Sbjct: 295 IGVPIEKIAEGL---LGANLSGLRMELSTTAAGVTIINDAYNANPTSMAAGLSALARIDA 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GRR AVLG M E+G+ S + H ++A+      +  V                   V 
Sbjct: 352 ---GRRFAVLGTMAELGDDSAAAHREVADQAVALGV-TVIAVDEPAY--------GAGVT 399

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +   +DG    +   L  GD V+VK S      R+   L
Sbjct: 400 HVSGVDGAVDAL-GDLRSGDAVLVKGSRVAALERVAQAL 437


>gi|229551598|ref|ZP_04440323.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|229315063|gb|EEN81036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus LMS2-1]
          Length = 463

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 131/473 (27%), Positives = 211/473 (44%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T  ++ + ++   +       V  G++ DSR + P   F  + G   DGH+FI  
Sbjct: 1   MMKM-TLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPA 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVG 118
           A   GA    V  D +       +P   V D L A+ KLA     ++    ++AITGS G
Sbjct: 59  AAAAGAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L
Sbjct: 117 KTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHAL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + L  P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+     L   
Sbjct: 177 SSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVS 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 ++  +FG                  +      Q   +      +G +   N L 
Sbjct: 233 RAKQVTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +        +   KAL+ F        R +  +      ++ + YNANP +MKA I 
Sbjct: 292 ALLVGRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIH 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             S+      GR IAVLGDM E+G+ S++ H  LA+ L  + I  V+L G  + AL +AL
Sbjct: 349 DFSEF--QTAGRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEAL 406

Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                   +H +  +    +   +Q+ +   D+V++K+S+      ++  L+ 
Sbjct: 407 TTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 459


>gi|242278171|ref|YP_002990300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
 gi|242121065|gb|ACS78761.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio salexigens DSM 2638]
          Length = 463

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/455 (26%), Positives = 195/455 (42%), Gaps = 14/455 (3%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  +L + +     +       +  + IDSR +   + FF I+G ++DGH+F+  A   
Sbjct: 3   LTLCELEEQLMGSSDLPSAADIEIAAVRIDSRLVKKGDVFFCIEGENFDGHNFVQQAFDA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VVV+  M         P   V D + AL ++A   R++S A +IA+TGS GKTT K
Sbjct: 63  GAVAVVVSQFMPEFE---DKPTIMVKDTVQALGRVAAYWRMKSHARMIAVTGSAGKTTVK 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   LS     +    + NN +G+PL++     +  + + ELG+S   ++  L  + +
Sbjct: 120 EMLAHVLSGSGSVHKNFMNLNNQLGLPLSMLEATGEETYWVMELGISLPHDMGELGPIAQ 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++  I PAHL     +E +A  K+ +F+ +   G      D    ELL   ++ + 
Sbjct: 180 PDMAIVHNIGPAHLEGLGSLENVADQKSSLFKYIRPEGVALCCKDH---ELLWEAANKIS 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S        +               ++   ++ EV+    G H A+N        
Sbjct: 237 KPVPFSSQDENAEYYSTLLHTLPDGSGRFLIKAGEETAEVILPTCGSHFAENAAAVTCAA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  ++    + L+     + R   +      G +TLID+SYNANP SM  AI    +I
Sbjct: 297 HQLGMELTEIAERLATVELPKQRFHCH----THGKWTLIDDSYNANPLSMNRAIDTAKRI 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +   +   + VLGDM E+GE +   H DL   ++       +  G H   +      S  
Sbjct: 353 A--DDRPLVLVLGDMLELGEEAGCAHCDLGSKIAETKPDATFYHGKHYSEVASQTNGSTL 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V   +        I    +   VV+ K S SC   
Sbjct: 411 VP-VKQPIEFLNGIHELGLSDAVVLFKGSRSCHME 444


>gi|326771700|ref|ZP_08230985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
 gi|326637833|gb|EGE38734.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces viscosus C505]
          Length = 483

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 203/483 (42%), Gaps = 25/483 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   
Sbjct: 7   LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSARDL 64

Query: 64  GAGLVVVN-----TDMVASIGSLSIPV--FGVDDVLGALNKLAVAARLRSK--------- 107
           GA   +V+        ++   +  +P+    V+D + AL  LA       +         
Sbjct: 65  GAVGAIVSDLEAARSGLSQGQAEEVPIGLVLVEDTVAALGALARTHLEALRQAAAEQGDR 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+
Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   G   LN 
Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPEGIAILNA 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286
           DD+        +     + +    + + AD +       +  ++  ++ L G +      
Sbjct: 245 DDARAAA---MAELAPARVLTFSARGRQADLRAENVDLDAAARAAFDLHLPGLAEPRRVQ 301

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +             L A +   + A  +         R   +   G   LID+SY
Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGLAPELVADRLGSVSIESPHRMDISELSGDLLLIDDSY 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S     ++    +  G+ RR+ V+ +M E+GE S + H    E+ +    + +  
Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAMLIG 419

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L E
Sbjct: 420 IGSTQEALEAARARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHLKE 479

Query: 467 EFP 469
             P
Sbjct: 480 VRP 482


>gi|148269824|ref|YP_001244284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           petrophila RKU-1]
 gi|147735368|gb|ABQ46708.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga petrophila RKU-1]
          Length = 426

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 108/446 (24%), Positives = 185/446 (41%), Gaps = 24/446 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                   ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S      
Sbjct: 3   DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD----- 57

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +F V+  + AL KLA         T++ ITGS GKTTTKE+L   L + +  +   G+ 
Sbjct: 58  RIFLVESSVDALAKLAREKLGNFSGTVVGITGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N   G+PL++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   
Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGNAHLEFFGTR 177

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I   K EI +  ++  T    +DD            +       F   +  D  L+ W
Sbjct: 178 ERIMETKMEIIKHSKENATAVTLFDDPDLRR------EVPCYRKTLFFGKEGGDSVLKDW 231

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +  E +       V   G            L I + L                 
Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNG-----GQLLNIAASLCVMRALGETVDIFDLAS 286

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                       +    ++D++YNA+P + + +I  L +      GRR AV+G M E+GE
Sbjct: 287 LKTVPGRFNVREKKDVLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGE 342

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S+ FH +L E L++ +  +++LS      +K        +  S+  + +   + S + +
Sbjct: 343 RSKEFHEELGERLNVLDGVYIFLSEPEAEWIK----SKKIILKSDDPEKIAKDLASRVTE 398

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GDVV+ K+S +    +++ +  +E  
Sbjct: 399 GDVVLFKASRAVRIEKVLEMFEKELE 424


>gi|197124212|ref|YP_002136163.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
 gi|196174061|gb|ACG75034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter sp. K]
          Length = 468

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 138/466 (29%), Positives = 205/466 (43%), Gaps = 6/466 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAAATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +   P   V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRPALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD     +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + +            +           +   L   + EV  H  G   A N      
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                 A   T  +           G+R R         L+D+ YNANPASM AA+ VL 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALDVLR 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419
            ++     R  AVLGDM E+G      H  L    +   ++ +   G      A      
Sbjct: 363 DLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAAGAA 422

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|300858818|ref|YP_003783801.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686272|gb|ADK29194.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206523|gb|ADL10865.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|302331078|gb|ADL21272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276765|gb|ADO26664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 516

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 117/494 (23%), Positives = 182/494 (36%), Gaps = 33/494 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +   + + + G    G  P   V G +  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIEL-SLGTIAEIVGGSLTSGTDPTALVTGSVEFDSRKVTAGGLFVALNGARVDGHDYAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFG---------------------VDDVLGALNK 97
            AV  GA   +++  ++  +  +   V                       V  VL AL  
Sbjct: 60  KAVADGAVGCLLSRPVMDGMRPVPGVVVPPIPENERKRDSYATENDVDGAVAAVLRALGL 119

Query: 98  LAVAARL---RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +A        +    ++ +TGS GKT+TK+M+    S+   T A  GS+NN IG P T  
Sbjct: 120 IARHVIDILTQKGLVVVGVTGSAGKTSTKDMMATIFSAAGNTVAPPGSFNNEIGHPYTAL 179

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   +  F I E+    +G I  L  +  P I V   +  AH+  F     IA AK E+ 
Sbjct: 180 KCTAETQFLISEMSARGIGHIAHLAAIAPPKIGVELNVGTAHVGEFGSQTAIAQAKGELV 239

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L + G   LN DD     + +++ A           S  A                  
Sbjct: 240 EALPENGEAVLNADDPLVAQMASRTRAR---VTSYSAVSTAAAVYATDITFDHNACARFR 296

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                        +     Q         +   A +D+   A S+         R     
Sbjct: 297 LHIEDENVHQITLLVAGEHQVSNALAAAAAAHAAGIDSETIAHSLNRHVGASAHRMSLVS 356

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T+ID++YNAN  SM+A +S L   +        AVLG M E+G  SQ+ H  +  
Sbjct: 357 CPRNITVIDDAYNANNESMRAGLSALVHTARSRGSSAWAVLGPMGELGRESQTVHAAIGA 416

Query: 395 VLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMD-GLFLFIQSSLVDGDVVVVKS 451
            L    +  +   G      AL  A  ++         +      +   L   DVV+VK+
Sbjct: 417 ELKNIGVHGLIAVGENSDSRALATAAEKTGITTLVARTNLEAAHKLAPLLHADDVVLVKA 476

Query: 452 SNSCGFYRLINLLL 465
           SN+   + + + L+
Sbjct: 477 SNAFALWEVADELV 490


>gi|320531618|ref|ZP_08032560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320136147|gb|EFW28153.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 483

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 130/483 (26%), Positives = 198/483 (40%), Gaps = 25/483 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  A   
Sbjct: 7   LSLSQIAAAVGGRLIG--PDVSVTGPVVTDSRQATEGSLFVAVHGERTDGHAHLGSAGAL 64

Query: 64  GAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--------- 107
           GA   +V+    A  G         S+ +  V+D + AL  LA       +         
Sbjct: 65  GAVGAIVSDLEAARSGLSQGRTEEPSMGLVLVEDTVTALGALARTHLEELRRAAADRGER 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++A+TGSVGKTTTK++    L+    T A   S+NN IG+PLT+        + + E+
Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAPSGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G S  G I +LT +     A +  +  AH+  F  IE +A+AKAEI  GL   GT  LN 
Sbjct: 185 GASGPGHIAYLTGIAPLDAAGVLMVGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTTILNA 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286
           DD+        +     + +    + + AD +          ++  ++ L G        
Sbjct: 245 DDARAAA---MAELAPARVLTFSSQGRAADLRTENVVLDVAARAAFDLHLPGLDEPRRVQ 301

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                              L A +   + A  +         R   +   G   LID+SY
Sbjct: 302 LSVAGAHNVANALAAAGLALAAGLAPELIAERLGSVSIESPHRMDVSELGGDLLLIDDSY 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S     ++    +  G+ RR+ V+ +M E+GE S + H    E+ +    + +  
Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVVSEMLELGESSAADHARTGELAAQAGAAMLIG 419

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L E
Sbjct: 420 IGSTQEALEAAGARGVEVVGFDDAATAISQIDALLSDGDAVLVKGSNGSGAWRLADHLKE 479

Query: 467 EFP 469
             P
Sbjct: 480 VRP 482


>gi|325105557|ref|YP_004275211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
 gi|324974405|gb|ADY53389.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Pedobacter saltans
           DSM 12145]
          Length = 431

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 115/436 (26%), Positives = 191/436 (43%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +S D+R +     FFA+KG ++D + F   A+  GA   +V+   +            V
Sbjct: 15  SVSTDTRKVTESCLFFALKGENFDANTFAEQAIALGAAFAIVDKQDLPKHPQ----FIFV 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DDVL  L  LA   R +    +I +TG+ GKTTTKE++   LS   KT A +G+ NNHIG
Sbjct: 71  DDVLKTLQDLAHYHRRQLGLPVIGLTGTNGKTTTKELINAVLSQKFKTAATLGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  D +  I E+G +H  EI  L  +  P   +IT +  AHL  F G E +  
Sbjct: 131 VPLTLLAITPDTEVAIVEMGANHQKEIELLCAIAVPDYGLITNVGKAHLEGFGGFEGVKK 190

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K G       D    L   +           +  + + ++   K      
Sbjct: 191 GKGELYDFLSKNGGTVFINRD---NLHLQEMARSRSFKEVIYYGTSSDNYVFGKLIANDP 247

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E        EV     G +  +N+L  + I   L        + ++ + P+  R +
Sbjct: 248 YLTVEWSDGENKDEVQSQLTGIYNFENILAAIAIGKKLGLTTQQIHEGINSYKPQNNRSQ 307

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    T+I + YNANP+SM  AI  ++++    +   + +LGDM E+GE S + 
Sbjct: 308 IIKTERN----TVIGDFYNANPSSMAVAIENIARLEADNK---VLILGDMFELGEESGAE 360

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + E      I+ V   G            +    + + ++ L  ++  + V   +++
Sbjct: 361 HRAVIEKAEKLGIAKVLFVGQEFFK-----NSNQKSVFLKNVEELRTYLHENPVHQALIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      ++I  L
Sbjct: 416 LKGSRGMKLEQVIAYL 431


>gi|254428841|ref|ZP_05042548.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
 gi|196195010|gb|EDX89969.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Alcanivorax sp. DG881]
          Length = 452

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 132/465 (28%), Positives = 196/465 (42%), Gaps = 22/465 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W    + Q   G   G      VN ++ D+R+I P   F A++G  +D HDF+  A   
Sbjct: 1   MW-LSQVAQWTGGTLQGD--DLKVNAVATDTRAIEPGCLFAALRGERFDAHDFLASAKTG 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ +  +   +       V D    L +LA     +     +A+TG+ GKTT K
Sbjct: 58  GAIAALVDREQDSFESA-----VRVADSREGLGRLAGGYAAQFDLPRLAVTGNAGKTTVK 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EM    L          G++NN +GVPLTL R+  +  F + ELG +  GEI + + L R
Sbjct: 113 EMAAAMLGDGTLATH--GNFNNDVGVPLTLLRLRAEHRFAVIELGANAPGEIAWTSSLTR 170

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T +  AHL  F  ++ IA AKAEIF G    G   +N DDSF +    K+ A G
Sbjct: 171 PQVVLVTNVTGAHLEGFGSMQGIADAKAEIFGGCTPGGQAIINNDDSFADFFAEKARAAG 230

Query: 244 -IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S  +S      L        +   E  LQ     V     G H   N LM    
Sbjct: 231 LTVVRVSMDESTRTGADLYAENIALHRDRAEFVLQPLGEAVTVPLPGAHQVSNALMACAA 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V  L  ++   +  L+   P  GR              ++D++YNANP S++AAI  L+ 
Sbjct: 291 VRALGVNLPQVLPRLAALKPVPGRMHIQAAGAGA----VVDDTYNANPGSVRAAIDWLAA 346

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                   ++ VLG M E+G  + S   +L E      +S +        A   A     
Sbjct: 347 QPA----PQMLVLGAMGELGPQADSLVEELGEYARQAGLSGLV---AMTGAAAAARGYGE 399

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +E       +    L  G  V+VK S S G   ++  L +E
Sbjct: 400 AAKIAEDYQQAASWSAPVLAQGGTVLVKGSRSAGMEAVVQRLTQE 444


>gi|172059545|ref|YP_001807197.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992062|gb|ACB62981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria MC40-6]
          Length = 468

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118
             +           + +     + +  V+  +   AL  LA   R R    ++A+TGS G
Sbjct: 60  AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113

Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE 
Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L  P +A++      H    + +E +A   A +   L   G      DD++  + 
Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +    A     I  F           +         + +     +M V    +G H A+N
Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPAGAMTVRLRALGEHNARN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354
            L           ++    + L  F P +GR +  +    +    T++D++YNANP SM+
Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+         R+ V+GDM E+G+   +FH ++        I  ++  G      
Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
             A   +    +   +  L   + ++         V+VK S      R+++ L  +
Sbjct: 407 CTAYGDTAR--HFGDVGALVTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|319900256|ref|YP_004159984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415287|gb|ADV42398.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides helcogenes P 36-108]
          Length = 432

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 190/435 (43%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A+++G+   +V+    A  G+       VD
Sbjct: 16  VTTDSRNCPQGSLFIALKGANFNGNAFAAKALEQGSTYAMVDEAQYAPAGNTH--YILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L KLA   R +    II ITG+ GKTTTKE++   LS         G+ NNHIGV
Sbjct: 74  NCLRTLQKLANYHRNQQGTRIIGITGTNGKTTTKELMAAVLSQGHSVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+    D  + E+G SH G+IR L  +  P   +IT +  AHL  F   + +   
Sbjct: 134 PLTLLRLKAHHDLAVIEMGASHPGDIRELVEITEPDYGIITNVGKAHLEGFGSFDGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L + G   +  D      LK  +  L +    +  +              +  
Sbjct: 194 KGELYDYLRRRGDSTIFIDHDN-PYLKEIAWGLNMIPYGTEDELYVNGRITGNSPYLT-- 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +   +G+  EV    IG +   N+L  + I      +     KAL+ + P+  R + 
Sbjct: 251 FKWKAGKEGERHEVQTQLIGEYNFPNVLAAVTIGRFFGVEPAKIDKALAEYVPQNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            + A N     LI ++YNANP SM AAIS    +    +   + +LGDM E+G+ S   H
Sbjct: 311 KKTADN----ILIVDAYNANPTSMMAAISNFRNMQAENK---MLILGDMRELGKDSAEEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L      +V L G    A +                 L   +Q     G  +++
Sbjct: 364 QKIVDYLEKCGFGNVILVGEQFAATRHG------YLTCPNASALIEALQKDRPAGKTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      + + L
Sbjct: 418 KGSNGIKLGTITDFL 432


>gi|260061850|ref|YP_003194930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
 gi|88785983|gb|EAR17152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Robiginitalea biformata HTCC2501]
          Length = 425

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 198/436 (45%), Gaps = 27/436 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR+I     FFA+KGP+++G++F + A+ +GA L VV+                V 
Sbjct: 16  VSTDSRTIPENGIFFALKGPNFNGNEFAIEALSRGAALAVVDEGDFPDEP----RCIRVP 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA+  RL+ KA II +TGS GKTTTKE++   LS   +T A  G+ NNHIGV
Sbjct: 72  DALAALQQLAMHHRLQCKARIIGLTGSNGKTTTKELIAAVLSKKYRTLATRGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  I E+G +H GEIR L+ + +P    IT    AHL  F G+E +   
Sbjct: 132 PLTLLRIAPETELAIVEMGANHQGEIRLLSEMAQPDFGYITNFGKAHLEGFGGVEGVIRG 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E++E L + G       D   +  K   +A  +            +    + K  ++ 
Sbjct: 192 KSELYENLMERGATIFMNADDPVQFEKLAGYANCVG-------FSTRNPAYMQIKNLTDG 244

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             + +Q+    ++    G        +   +              +A++           
Sbjct: 245 PAVRLQVDDVVVQTQLTGRYNFSNCAVSACI------GKHFGVPAEAIAEALESYIPANN 298

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +G   ++ ++YNANP SM AA+  L+++    +   IA+LGDM E+G  + + H
Sbjct: 299 RSQLIERGNLRILLDAYNANPTSMAAALENLAEMDSPRK---IAILGDMFELGAEAAAEH 355

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVV 448
             +       N   ++L G H           +          L   ++++ + G   V+
Sbjct: 356 EAVGRFALSKNPEKLYLVGQHFYDTA------LPAARFPDFAALSRELKANPLTGPATVL 409

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      R++  L
Sbjct: 410 IKGSRGMALERVLEFL 425


>gi|258540735|ref|YP_003175234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|257152411|emb|CAR91383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 462

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 130/469 (27%), Positives = 209/469 (44%), Gaps = 20/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  ++ + ++   +       V  G++ DSR + P   F  + G   DGH+FI  A   
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLFVPLHGER-DGHEFIPAAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTT 122
           GA    V  D +       +P   V D L A+ KLA     ++    ++AITGS GKTTT
Sbjct: 62  GAVATFVAEDHLPMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPKVVAITGSNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+M    L++         +YNN IGVP+T+  M  + +  + E+GM   G++  L+ L 
Sbjct: 120 KDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGMDRPGQLHALSSLA 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+     L       
Sbjct: 180 EPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDEP----LLVSRAKQ 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             ++  +FG                  +      Q   +      +G +   N L  L +
Sbjct: 236 VTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMGEYNVVNALAALLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   KAL+ F        R +  +      ++ + YNANP +MKA I   S+
Sbjct: 295 GRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNANPTAMKAVIHDFSE 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---- 418
                 GR IAVLGDM E+G+ S++ H  LA+ L  + I  V+L G  + AL +AL    
Sbjct: 352 F--QTAGRHIAVLGDMLELGDQSRALHAGLADALDPHEIQEVYLYGSEMQALAEALTTKY 409

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +H +  +    +   +Q+ +   D+V++K+S+      ++  L+ 
Sbjct: 410 PQDQVHYYPLDAKSTMIRDLQNDVGHDDMVLLKASHGLHLETVLAALVA 458


>gi|170700178|ref|ZP_02891196.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
 gi|170134910|gb|EDT03220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria IOP40-10]
          Length = 468

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 114/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118
             +           + +     + +  V+  +   AL  LA   R R    ++A+TGS G
Sbjct: 60  AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113

Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE 
Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L  P +A++      H    + +E +A   A +   L   G      DD++  + 
Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +    A     I  F           +         + +     +M V    +G H A+N
Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPSGAMTVHLRALGEHNARN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354
            L           ++    + L  F P +GR +  +    +    T++D++YNANP SM+
Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+         R+ V+GDM E+G+   +FH ++        I  ++  G      
Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
             A   +    +   +  L   + ++         V+VK S      R+++ L  +
Sbjct: 407 CTAYGDTAR--HFGDVGALVTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|225011571|ref|ZP_03702009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
 gi|225004074|gb|EEG42046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Flavobacteria bacterium MS024-2A]
          Length = 437

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 116/441 (26%), Positives = 194/441 (43%), Gaps = 24/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GIS D+R++     F A++G +++G+ +   A+  GA  V+V+   + ++G+ S     
Sbjct: 19  SGISTDTRTLKKDALFLALRGDNFNGNLYAEKALSLGASSVIVDDPKLKNLGANS---IV 75

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L +LA   R +    II ITGS GKTTTKE++   LS   K  A  G+ NNHI
Sbjct: 76  VEDTLKTLQELATYHRKQLNTPIIGITGSNGKTTTKELVREVLSQKYKILATKGNLNNHI 135

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  +    I E+G +HL EI+ L  +  P+   IT    AHL  F G++ + 
Sbjct: 136 GVPLTLLELTKEHQIAIIEMGANHLDEIKNLCCISLPNWGYITNFGKAHLEGFGGVDGVI 195

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++  L +     L   D   ++            + SFG  K   FQ+   ++  
Sbjct: 196 KGKSELYNHLIEQQQKILINGDDPLQI-----KQTKNYPVSSFGHGKENTFQISTNEKDD 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E                 +  G +   N+   +    I      +  KA+  +     R 
Sbjct: 251 ELQLT-----YNDQIFTSNLYGAYNLNNIAAAILFGYIFEVPTKSIQKAIQKYQATNNRS 305

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           ++ +        ++I ++YNANP SM+ AI    +I+       + ++GDM E+G  S+ 
Sbjct: 306 QKIKIKNT----SIILDAYNANPTSMEHAIKAFKKIATQKS---VLIMGDMKELGVESEK 358

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DV 446
            H  + +         + L G      KD       V   + ++    FI +      D 
Sbjct: 359 EHQQIVDYCLEMKFEQIDLIGPLFSKTKDVADM---VRKHKNLNSFTNFINAQSQLDFDH 415

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           +++K S S     L+ L   +
Sbjct: 416 IMIKGSRSMKLETLLPLFESK 436


>gi|71891925|ref|YP_277655.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796031|gb|AAZ40782.1| D-alanine:D-alanine-adding enzyme [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 457

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 133/470 (28%), Positives = 216/470 (45%), Gaps = 22/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P ++ H++   +    IG      ++ I+I+S  I  Q  F A+ G  +DGHDF   A
Sbjct: 1   MIP-FSLHEIAPVLNAKYIG--MDLIIHEITINSNIIHKQCMFIALIGKRFDGHDFTSQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++VN  ++     L +P   V D   AL  LA   R +  + +IAITGS GKT
Sbjct: 58  IAAGAQALLVNHHIL-----LDVPQLIVPDTRCALIMLARWVRQKVSSKVIAITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM T  L     T A  G++NN IGVP+TL R+    +F I ELG S  GE+  L+ 
Sbjct: 113 SVKEMTTSILKECGHTIATQGNFNNMIGVPITLLRLTKKNNFAIIELGTSSPGELVQLSK 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V  ++A++  + PAHLS F  + +I   K +IF  L+  GT  +N D     L + K  
Sbjct: 173 IVAANVALVNNVYPAHLSGFKSLSKIGKEKGKIFSELDLNGTGIINADSHALSLWR-KPL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S   +   DF          +    +     +  VV   +G H   N L   
Sbjct: 232 KGKSMWFFSLRTNVGIDFFASNIISEKNRIRFILHTPYGTSPVVLSMLGTHNVANALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A++   +  L       GR       +      L+D++YN+N  SM +AI VL
Sbjct: 292 ALAFSVGANLSEVVYGLENIKTLPGRLF---PIILGEGKLLLDDTYNSNVGSMISAIHVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     G RI V+ DM E+G+  S  +H  + ++++  NI+ +   G     +     
Sbjct: 349 TTMP----GYRILVVSDMLELGKYKSIKYHCYIGKLIATTNINKILTIGSVSCCISKICG 404

Query: 420 RSIHVHYSETMDGLFLFIQSSLV-DGDV-VVVKSSNSCGFYRLINLLLEE 467
           +     +    + L ++I+  L     + V+VK S      ++IN + +E
Sbjct: 405 KGK---HFRNKNKLIIYIKQMLSIHNSISVLVKGSRGFKMEQIINAIRDE 451


>gi|198274372|ref|ZP_03206904.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
 gi|198272738|gb|EDY97007.1| hypothetical protein BACPLE_00517 [Bacteroides plebeius DSM 17135]
          Length = 821

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 108/468 (23%), Positives = 187/468 (39%), Gaps = 24/468 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++   +     G      ++ I  DSRS+    +  FFA+K    DGH +I    QK
Sbjct: 4   TIEEITAILGAKRTGTTSST-IDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPDLYQK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    V+N    A+          V + L +L +LA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVINEIPEAASSYTDANFLIVPNPLKSLQRLASKHREQFQVPVIGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWLYQILSPDRTITRSPRSYNSQIGVPLSVWLMNEHTELGIFEAGISEMGEMEALRPIIQ 182

Query: 184 PHIAVITTIAPAHLSNF-----SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           P I ++T I  AH  NF       +E++   K            +  +         +  
Sbjct: 183 PTIGILTNIGGAHQENFSSVQDKCMEKLQLFKDCDVIVYNGDNELITSCVTKSLFTAREI 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + +        F +    D            + ++ +  G   E     I     +N L 
Sbjct: 243 AWSTKDSERPLFIEKILKDDT---------GTTIKYRYLGFFKEYRIPFIDDASIENSLN 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   L    +T  + +    P      R      +   TLI++SYN++ AS+  A+ 
Sbjct: 294 CLAVALYLMVPPETIAERMLHLEPI---AMRLEVKEGKNGCTLINDSYNSDFASLDIALD 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            + + S      R  +L DM E G+ S+  +  +A+++    + H+   G  + A  +  
Sbjct: 351 FMMRRSEDKNRERTLILSDMLESGQTSKLLYRQVADLVHSRKVDHIIGVGEEISAAANRF 410

Query: 419 PRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              I   +      L    + + L + D +++K +    F  + + L 
Sbjct: 411 E--IQKDFFANTSELLNSGLLNQLHNED-ILIKGARVFHFDDITDALE 455


>gi|209545290|ref|YP_002277519.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532967|gb|ACI52904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 162/471 (34%), Positives = 248/471 (52%), Gaps = 10/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++         I +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDL-IATLPPAGIAIVPDDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG        +    L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALKPILGGRAA--LLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +       R+AVLGD+ E+G  +++ H  L     L +   V+ SG  +  L D LP 
Sbjct: 357 GLLPATR---RMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S    ++     L   ++ ++   DV++VK S       ++ +L    PA 
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVAVLTA--PAT 461


>gi|91215145|ref|ZP_01252117.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186750|gb|EAS73121.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 427

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 190/437 (43%), Gaps = 26/437 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + I  D+R I     FFA+KG ++DG+ +   A++KGA   V++   +            
Sbjct: 15  SSICTDTRKIESNCLFFALKGDNFDGNLYADQALEKGASFAVIDNPDLQGDRK-----IL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL  L  LA   R + K  I+AITGS GKTTTK++++  LS   K  A  G+ NNHI
Sbjct: 70  VKNVLATLQDLAHFHRKQLKIPIVAITGSNGKTTTKKLVSEVLSKKFKVRATKGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     ++D GI E+G +H  EI  L  +  P+   IT    AHL  F G+E + 
Sbjct: 130 GVPLTLLSFTAELDLGIIEIGANHQKEIESLCKIAEPNYGYITNFGKAHLEGFGGVEGVI 189

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+++ L     +     D   ++             YS G+   +D ++       
Sbjct: 190 KGKSELYDYLIHHDGLIFFNRDDDIQV-----KKAVNYKNYSIGEKPLSDCRVTFMDAN- 243

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V+L+   +++    IG +  +N+   +G+        D   +A+  F       
Sbjct: 244 ----PFVELEYSHLQIKSQLIGEYNFKNIAAAIGVGRYFGVGKDEIKEAIENFE----AE 295

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     + +    ++ ++YNANP SMKAA+    ++S   +     +LGDM E+GE +  
Sbjct: 296 EMRSQVIEKNDLKILLDAYNANPTSMKAALESFKKMSSQSQ---TVILGDMFEIGETTLE 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDV 446
            H  + +     N   +   G H            ++    T   L  FI          
Sbjct: 353 EHRQILKTCETLNFDSILACGEHFSEASKGFE---NISSFRTKKDLTAFISKYKPKASSF 409

Query: 447 VVVKSSNSCGFYRLINL 463
           +++K S       L++ 
Sbjct: 410 ILIKGSRGMQLETLMDA 426


>gi|313205596|ref|YP_004044773.1| udp-n-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|312444912|gb|ADQ81267.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Riemerella
           anatipestifer DSM 15868]
 gi|315022674|gb|EFT35699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Riemerella anatipestifer RA-YM]
 gi|325334975|gb|ADZ11249.1| UDP-N-acetylmuramyl pentapeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 424

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/438 (23%), Positives = 195/438 (44%), Gaps = 27/438 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +SIDSR+IA  + FFA  G +++       A+ KGA  V+V         ++S  +F 
Sbjct: 14  NKVSIDSRTIAEGDLFFAFSGENFNAATLAEDAINKGALAVIVEQKEYE---NISKNIFY 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L +L++  R +    IIA+TGS GKTT+KE++   LS   K     G+ NNHI
Sbjct: 71  VPSTLKFLQELSIFHRNKLNIPIIALTGSNGKTTSKELIAAVLSKKYKVQFTKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  + +  + E+G +H  EI  L  + +P    +T    AHL  F G+E + 
Sbjct: 131 GVPLTLLSIKPEHEIAVVEMGANHQKEIERLCQIAQPDYGYVTNFGKAHLEGFGGVEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+++ L+              ++L   +  + ++    + K          +    
Sbjct: 191 KGKSELYDYLK----------KENKQILVNANDTIQVEKTKDYSKIICFGTLQSDYDFQL 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                 V L  +  E++    G +   N+   + +      D +   +A+  + P   R 
Sbjct: 241 FYDNQRVGLIFEGEEMISQLTGAYNFTNISAAVTLGLHFGIDKNLIKEAIQEYTPTNMRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    +G  TL+ ++YNANP+SM  ++   +       G +  ++GDM E+G+ S+ 
Sbjct: 301 QIMQ----KGDKTLVLDTYNANPSSMAVSLENFALF----NGCKTVIIGDMLELGDASKE 352

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + +     N   +   G H  ++      +           L +++++  +    +
Sbjct: 353 EHKTILQKAQSLNFDKIITVGKHFSSV------NTQGTAFLNTQQLSVYLKNQPLTTKNI 406

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K S      +L++ ++
Sbjct: 407 LLKGSRGIALEKLLDDIV 424


>gi|148651953|ref|YP_001279046.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Psychrobacter sp. PRwf-1]
 gi|148571037|gb|ABQ93096.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Psychrobacter sp. PRwf-1]
          Length = 505

 Score =  217 bits (552), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 116/495 (23%), Positives = 189/495 (38%), Gaps = 41/495 (8%)

Query: 4   LWTFHDLLQAI---QGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +WT   LL A     G  IG             I  D+R I   + F AI G ++DGH F
Sbjct: 12  IWTPEQLLAATAQLNGEWIGLEAADSSSLRATRIITDTRKIEAGDIFLAIVGENFDGHSF 71

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115
           +  AV+KGA   +V+  +      +++P   VDD   A  ++A   R +     +IA+TG
Sbjct: 72  VASAVEKGAIATIVSQPLSE----VNVPQLKVDDTRLAFGQIAAYRRQQHPNLKVIALTG 127

Query: 116 SVGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           S GKTT KEML    +            T    G+ NN  GVP+ L  +     + + EL
Sbjct: 128 SSGKTTVKEMLRHIFAQVEAASADVQSTTLVTRGNLNNDFGVPMMLLELEQQHRYAVLEL 187

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H+GEI +   +V+P +A I  I  AHL  F G + IA  KAEI++ L +  T  +  
Sbjct: 188 GANHVGEIAYTAAMVKPDVACILNIGTAHLGEFGGRDNIAKTKAEIYQPLTQASTAVVPC 247

Query: 228 DDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           DD + + L   AK H   I         +        +    + + ++ + Q        
Sbjct: 248 DDDYSDQLMSTAKQHTDTIIGFGWHSLEQRTAKLPAVYATEVKTTALQSRFQLHFAIEGK 307

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL-IDE 344
                 +   M     + + L A        +S     +G  +        G   L    
Sbjct: 308 APAMVSVLLPMAGEHNVSNALAAAACAYAAGVSAELIAQGLNQAKSSKGRLGRQRLGQHH 367

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +    +   ++   + +    EG RI VLGD+ E+G+ + S H  L E ++   + ++
Sbjct: 368 IIDDTYNANPNSMRAAADVLAAQEGTRILVLGDIGELGDDAVSEHYKLGEAIANKAVDYM 427

Query: 405 WLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-----------SLVDGDVVVVKS 451
             +G                  +  +T   L   +               +       K 
Sbjct: 428 LCAGEFAKDTVAGASSQGMTQAYSFDTKADLLPKLIELVQTQQQQGQLCTLL-----FKG 482

Query: 452 SNSCGFYRLINLLLE 466
           S +     LI+ L +
Sbjct: 483 SRTTTMETLIDDLTQ 497


>gi|257453536|ref|ZP_05618826.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
 gi|257448994|gb|EEV23947.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Enhydrobacter aerosaccus SK60]
          Length = 500

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 135/510 (26%), Positives = 208/510 (40%), Gaps = 61/510 (11%)

Query: 1   MNP-LW---TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M   +W      + L+ +         Q     I  D+R I   + F AI+G ++DGHD+
Sbjct: 1   MTAYIWQSANLTEALKDLNPTFHSDFTQTS-KKIITDTRKIEQGDIFLAIQGDNFDGHDY 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITG 115
           +  A  KGA L +V+  +        +P   V D   AL KL    R +     ++AITG
Sbjct: 60  VKTAKDKGAVLAIVSRAV-----ESDLPQLVVTDTKLALGKLGAYRRDQHPNLKVVAITG 114

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTT KEML   L+ I  T    G+ NN +GVP+ L  +     + + ELG +H+GEI
Sbjct: 115 SSGKTTAKEMLGSILNRIAPTLITRGNLNNDLGVPMMLLELTDAHRYAVMELGANHVGEI 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            + T LV+P +A +  I  AHL  F G + IA  K+EI++GL   GT  + + D +F+ L
Sbjct: 175 AYTTQLVKPDVACVLNIGTAHLGEFGGRDNIAKTKSEIYQGLSDAGTAIVPFGDDYFDTL 234

Query: 236 KAKSHALGIKTIYSFGKSK------------------------------NADFQLRKWKQ 265
              +     + I +FG+                                 AD        
Sbjct: 235 LNNAQQF-TQNILTFGERDVSLADAGVDMQQAKEIGLTDEDTVLLMGDVFADDVEVGNTS 293

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               ++     + +S  V  +  G H   N L        L   +D   K L    P +G
Sbjct: 294 TFSLNFNFEIDEIESQNVSLNFAGEHNISNALAAAACAQALGLSIDDIAKGLDAAKPAKG 353

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R          G  TLID++YNANP+++ AA  VL           + VLGD+ E+G+ +
Sbjct: 354 RLNFIE----FGKHTLIDDTYNANPSAVLAATQVL----VSQGAPTMLVLGDIGELGDAA 405

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALK--------DALPRSIHVHYSETMDGLFLFI 437
           Q  H  L E ++   ++ ++  G                A    +          L   I
Sbjct: 406 QEEHRKLGEAIAASGVTVLYTVGELTPVTVAQAQASGMQAQASGMQAQAYPDKATLLAAI 465

Query: 438 QSSLVDGD---VVVVKSSNSCGFYRLINLL 464
           +  L   D    ++ K S      ++I+ L
Sbjct: 466 KDKLTSSDDAWHILFKGSRYMMMEQVIDEL 495


>gi|330752619|emb|CBL87563.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 427

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/439 (25%), Positives = 188/439 (42%), Gaps = 28/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G+  DSR I     FF+++G +++G+ F   A++ GA   V++ +              
Sbjct: 14  SGVVTDSRKIKNNCIFFSLQGSNFNGNQFAKSAIENGAMYAVIDEEKYFENKEN---YIQ 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R + K  II ITGS GKTTTKE++   L +  KTY   G+ NNHI
Sbjct: 71  VDNSLATLQQLANFHRKKVKTKIIGITGSNGKTTTKELINSVLKTHFKTYCTKGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPL+L  +  + +F + E+G +H+GEI  L+ +  P+   IT    AHL  F   E + 
Sbjct: 131 GVPLSLLEISENTEFAVIEMGANHIGEIELLSKIAEPNYGYITNFGKAHLEGFGSEEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++E L ++        D      K K         + FGK      +        
Sbjct: 191 KGKSELYEFLTESSGFIFYNSDDE----KQKHILSNYNKKFGFGK------EAGDLNYLV 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +     + ++  +        G +   N++  + I   L   V+     +S +     R 
Sbjct: 241 KAENPNIVVEVNNKTFKSTLFGNYNIPNVISAISIGIFLGVPVEKVKNGISDYISSNNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +   N     +I ++YNANP+SM  AI          +   + +LGDM E+G     
Sbjct: 301 QILKINSNN----VILDAYNANPSSMLLAIKAFQNAELENK---VLILGDMFELGRDENK 353

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           FH ++ +  +  +I  V+L G         +    S +               SSL    
Sbjct: 354 FHQEIVDYCNNLDIERVFLVGEIFSKTNYSNKFISSHNYIELSNKKEFKEIKHSSL---- 409

Query: 446 VVVVKSSNSCGFYRLINLL 464
             ++K S      ++++ +
Sbjct: 410 --LIKGSRGIELEKILDYI 426


>gi|332873768|ref|ZP_08441710.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
 gi|323519648|gb|ADX94029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332737991|gb|EGJ68876.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acinetobacter baumannii 6014059]
          Length = 466

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   +
Sbjct: 25  GYWHKDQIPQSEIKRILTDSRHAESGDAFLALKGERFDAHNFVAQVAANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFLQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|184159717|ref|YP_001848056.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|183211311|gb|ACC58709.1| UDP-N-acetylmuramyl pentapeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|322509630|gb|ADX05084.1| murF [Acinetobacter baumannii 1656-2]
          Length = 466

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 125/459 (27%), Positives = 197/459 (42%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + LV+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKLVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   +    ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSVNFQLHTPQGSSFVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|153808921|ref|ZP_01961589.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
 gi|149128254|gb|EDM19473.1| hypothetical protein BACCAC_03222 [Bacteroides caccae ATCC 43185]
          Length = 432

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 188/436 (43%), Gaps = 18/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A++ G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAGKALEDGCAFAIIDEAQYAIEG--DRRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS         G+ NNHIG
Sbjct: 73  NDCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQTHNILYTQGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHQGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K G   +        L+   + A G+  I                     
Sbjct: 193 TKGELYDFLRKKGNSTIFIHHDNPYLM---NIAKGLNLISYGSGEDLYVNGCITGNSPYL 249

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               + +  G+   +    IG +   N L  + I      +     +AL+ + P+  R +
Sbjct: 250 ALEWKAEKNGEIHRIRTQLIGEYNFPNALAAITIGRFFGVEDRKIDEALAGYTPQNNRSQ 309

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               A N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 310 LKETADN----TLIIDAYNANPTSMAAALQNFRNMTVS---HKMLILGDMRELGTESLNE 362

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +   +   VWL G    ++  +            +  +   ++++   G  ++
Sbjct: 363 HQKIVDYIKESDFEKVWLVGEQFASVCHSFKT------YANVQEVIKELETNKPKGYTIL 416

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 417 IKGSNGIKLSSTVEYL 432


>gi|257452947|ref|ZP_05618246.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|317059488|ref|ZP_07923973.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
 gi|313685164|gb|EFS21999.1| histidinol-phosphatase [Fusobacterium sp. 3_1_5R]
          Length = 427

 Score =  217 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 186/442 (42%), Gaps = 34/442 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +           
Sbjct: 16  PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADR-----YSGNH 66

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T   +G+
Sbjct: 67  EKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLGN 126

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL     
Sbjct: 127 YNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKT 186

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +  AK E+   L +   I         ++   K  A               D +   
Sbjct: 187 RENVFKAKTELLPYLPEGCFISSGD-----DVFLKKIPA----------IHVGYDERNDY 231

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                ++       Q    +      G H   N  M + I  ++  D  T  + L     
Sbjct: 232 RIFGYQKKDRRSSFQLNDKQYEIPLEGKHNVMNAAMGIAIAEMIGMDSKTIQQNLLQIEL 291

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +R      +     I+++YNA+P SM  A+  L + +   +   IAVLGDM E+G
Sbjct: 292 SPMRFERSEYQGTK----YINDAYNASPISMGVALDSLVETTAECK---IAVLGDMLELG 344

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
           E   +FH D+ E     ++  + L G  +             V + E  + +  +++   
Sbjct: 345 EKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKDYLKQFP 404

Query: 442 VDGDVVVVKSSNSCGFYRLINL 463
                V++K+S       +I  
Sbjct: 405 RK--TVLIKASRGMKLEEIIER 424


>gi|149280098|ref|ZP_01886222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
 gi|149229112|gb|EDM34507.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Pedobacter sp. BAL39]
          Length = 433

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 199/435 (45%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R+I+    FFA++G  ++ ++F   A+++GA   +++                V 
Sbjct: 17  VCTDTRAISKDCLFFALRGDKFNANEFAAQALKEGAAYAIIDDQQYH----TDERCILVP 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL  LA + R+  +  +I +TGS GKTTTKE++   LS   +T+A  G+ NNHIGV
Sbjct: 73  DVLTALQDLARSHRIELRIPVIGLTGSNGKTTTKELIKAILSEKYRTFATSGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +  D++  + E+G +H  EI  L  +  P   +IT +  AHL  F G E +   
Sbjct: 133 PLSILSITDDIEIAVIEMGANHQKEIELLCSIALPEYGLITNVGMAHLDGFGGFEGVKKG 192

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KAE++  L++        +D+ + L  A +  L     Y   +S      L       E 
Sbjct: 193 KAELYAHLKQQQGKAFINNDNPYLLEMAHTAQLSDIVYYGSERSNTISGALNSTDPFLEL 252

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           SW +   +      +    G +  +N+L  + I    +   +   K LS + P+  R + 
Sbjct: 253 SWQKQGSEFSVGTQLT---GAYNFENILAAICIGDFFSLTPEQINKGLSGYAPQNNRSQL 309

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N    T+I + YNANP+SM AA+  +  +    +   + ++GDM E+G  S   H
Sbjct: 310 TKTEHN----TVICDFYNANPSSMNAALKNMDSLHAANK---VVIIGDMFELGSESAEQH 362

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +    +   +  +   G +              HY E+     +++Q   V   ++++
Sbjct: 363 LQIILQATNMTLDTLIFIGKNFHQ----AGMGHSGHYFESPADAAVYLQQQPVKDSLILL 418

Query: 450 KSSNSCGFYRLINLL 464
           K S      +L+  L
Sbjct: 419 KGSRGMALEQLLPQL 433


>gi|301169874|emb|CBW29478.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Haemophilus influenzae 10810]
          Length = 457

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 133/473 (28%), Positives = 208/473 (43%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   L Q +Q   IG      V  I+ D+R       FFA+KG  +D H ++  A
Sbjct: 1   MIKLSTV-QLAQILQAKLIG-DENVQVEEINTDTRKSVSNSLFFALKGEKFDAHQYLDQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V        V   +     S+SIP   V D   AL +LA   R +     +A+TGS GKT
Sbjct: 59  V----AQGAVAVVVQQENSSISIPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKT 114

Query: 121 TTKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI 
Sbjct: 115 TVKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEIN 174

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ +
Sbjct: 175 YTTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQ 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     I+           D+ ++  +   + S   +      +++    +G H  +N 
Sbjct: 235 KEISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNA 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +   + A +      L      +GR    +   N     L+D++YNAN  S+ AA
Sbjct: 289 LAATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPN---LLLLDDTYNANKDSLCAA 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL           I  + DM E+GE S + H ++ + ++L N+  V   G     + +
Sbjct: 346 IDVLKSYDA----FLILCVADMKELGENSLAIHREVGQYVNLVNLDLVCSYGNESAVISE 401

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           A+        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 402 AVLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 454


>gi|56459543|ref|YP_154824.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178553|gb|AAV81275.1| UDP-N-acetylmuramyl pentapeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 467

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 206/471 (43%), Gaps = 23/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +   + + ++G  IG      ++ +S D+R+      F A+KG ++D HDF+  A
Sbjct: 1   MISV-SLKWIAEQVEGRLIG--SDCTIDAVSTDTRADLTDALFIALKGKNFDAHDFVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  ++    + +           V++   AL +L  A + +     +A+TGS GKT
Sbjct: 58  IAKGAAAIICEKKVDSE-----CRQIIVENSRHALGRLGAAIKAKVAPKTVAVTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML   LS      A  G++NN IGVPLTL R+  +  + + ELG +H GEI + T 
Sbjct: 113 TVKEMLAAILSIRHPVLATQGNFNNDIGVPLTLLRLQEEHKYAVVELGANHPGEISYTTD 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  ++ AH+  F  +  +A AK EIF G+   GT     D  F+   +    
Sbjct: 173 LVKPDVAILNNVSAAHVEGFGSLHGVARAKTEIFRGVGGQGTAITPRDSEFYPCWQRAC- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   +FG S +AD         SE             E     +      N+L  L
Sbjct: 232 --SDMQWKTFGLSDSADVYASDVTLNSEG--HPSFTLHLGGETKQLELKLSGRHNVLNAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +  +    +     +     +    R           +ID++YNA+ AS KAA+ +L
Sbjct: 288 SAAAAASELGISLNDIANGLQQVQPAQGRLTTIKVSDHLRIIDDTYNASVASTKAALDLL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  +G RI VLGDM E+G  ++++H D+ E      I +++  G    +  +    
Sbjct: 348 ----GSYQGYRIFVLGDMGELGADARAYHEDIGEHAIGSGIDNLYSLGVLSQSASEVFNG 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGD-----VVVVKSSNSCGFYRLINLLLE 466
                +  ++  L   +   L +        V+VK S S    R++  + +
Sbjct: 404 HG-GKHFGSLQSLVESVLQRLTEQTGKQPVTVLVKGSRSAHMERVVAAIQQ 453


>gi|229495556|ref|ZP_04389289.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229317539|gb|EEN83439.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 460

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 198/437 (45%), Gaps = 13/437 (2%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +G++ DSR+      F A+KG  +DG+DF L A+ KG    VV+    A +         
Sbjct: 35  SGVTTDSRAPKRDSLFIALKGERFDGNDFALDALAKGCAYAVVDR---AELAQKEARCLY 91

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D   AL +LA   R +    II ITG+ GKTTTKE+++  L S     A +G+ NN I
Sbjct: 92  VEDSFVALTELARMHRRQLGFPIIGITGTNGKTTTKELISAVLRSTYTIGATVGNLNNQI 151

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     ++ +G+ E+G SH+G+I  LT +  P   +IT I  AHL  F   E + 
Sbjct: 152 GVPLTLLSFTPEMQYGVVEMGASHIGDIAELTAIAEPDFGLITNIGRAHLEGFGSFEGVT 211

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK E++   +  G        +  + L  +  A  ++T Y   +       L       
Sbjct: 212 KAKCELY---DWLGQHNGEAWVNADDPLLMQHSAPLVRTTYGTSREAFFRASLLDHPLGY 268

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             ++     +          +G +   N L  + +   L       + AL  + P   R 
Sbjct: 269 FLAFAFYWQRETYRVHT-QLVGKYNLPNALAAVAVGLRLGVAPPDIVMALEHYSPSNSRS 327

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      +     +  ++YNANP+SM  AI     +S  G   +  +LGDM E+G  S+ 
Sbjct: 328 QYIANTPHHNNLVV--DAYNANPSSMYTAIENF--LSTSGAQAKYLILGDMFELGSASRE 383

Query: 388 FHIDLAEVLSLYNIS-HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            H+ L + L+        +L G    AL+    ++ H+HY  + + L   ++ + ++   
Sbjct: 384 EHLALVQRLARETTDITCYLVGKEFAALESEA-KAPHLHYFPSTEILAEQLRLAPIEHAF 442

Query: 447 VVVKSSNSCGFYRLINL 463
           ++VK+S    F  L+ L
Sbjct: 443 ILVKASRGMHFESLVEL 459


>gi|281412293|ref|YP_003346372.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373396|gb|ADA66958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermotoga
           naphthophila RKU-10]
          Length = 426

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 179/446 (40%), Gaps = 24/446 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                   ++S+ +   + F A+KG  +DGHDFI  A++ GA  V+     V S      
Sbjct: 3   DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALKNGAYAVIAERKTVNSD----- 57

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +F V+  + AL KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ 
Sbjct: 58  RIFLVESSVDALAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N   G+PL++       +  I E+  S  G+I  L  +  P IAV+  +  AHL  F   
Sbjct: 118 NTEYGLPLSILNDYKGEEILILEMAASKPGDIAHLCKIAPPDIAVLLNVGNAHLEFFGTR 177

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I   K EI +  ++  T    +DDS       +          S        +     
Sbjct: 178 ERIMETKMEIIKYSKENATAVTFFDDSDLRREVPRYRKTLFFGKESGDSVLKGWWYYEGS 237

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                                   +      N    L I + L                 
Sbjct: 238 TIA-----------EFEAFESLFTVKLSGYWNGGQLLNIAASLCVMRALGETVDIFDLAS 286

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                       +    ++D++YNA+P + + +I  L +      G++ AV+G M E+GE
Sbjct: 287 LKTVPGRFNVREKEGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGE 342

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S+ FH +L + L++ +  +V+LS      +K        +  S+  + +   + + + +
Sbjct: 343 RSKEFHEELGKRLNVLDGVYVFLSEPEAEWIK----SEKIILKSDDPEDIAKDLAARVTE 398

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GDVV+ K+S +    R++ +  +E  
Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKELE 424


>gi|323356555|ref|YP_004222951.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323272926|dbj|BAJ73071.1| UDP-N-acetylmuramyl pentapeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 470

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 210/464 (45%), Gaps = 22/464 (4%)

Query: 6   TFHDLLQAIQGHSIG---IVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   L  A+ G  +      P   V G+   DSR I P + F A  G   DGH F+  AV
Sbjct: 5   SLSHLADALGGRLVVRGDDTPDTLVAGLVDTDSRLIEPGDIFVAKPGETTDGHLFVGTAV 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAITGSV 117
           ++GA L +V  ++        +    V D + AL+ LA       R   +  I+ ITGS 
Sbjct: 65  ERGAALAIVERELDDP-----VSQIVVPDAVTALSDLARDVVARVREHGRLRIVGITGSN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTK +L   LS   +T +   S+NN +G PLT+ R+  D  F + E G S  G I  
Sbjct: 120 GKTTTKNLLARILSDEGETVSPRASFNNEVGAPLTMLRVTEDTRFLVSEFGASAPGAIAH 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  LV P + V+  +  AH   F GIE    AK+E+     + G   LN DD     ++ 
Sbjct: 180 LAGLVTPDVGVVLMVGMAHAGGFGGIESTFRAKSELVHATREGGLAVLNVDDPRVAAMEP 239

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +   G    + FG+ + A  +    +  +  +  ++ + G+   +    +G H   N L
Sbjct: 240 FARERGQDVRW-FGRGERAAVRAVDVEVSASGTRADLLVDGEPFTLTLRVLGEHHVMNAL 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L   + L      A +A++     E   +     L      +I+++YNA+P SM AA+
Sbjct: 299 AALATATALGVP---AAEAIARLETVEIAERWRMQPLGSDRVRIINDAYNASPDSMAAAL 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-D 416
             L+QI+  GE   +AVLG M E+GE +   H  +  +     I  + + G     +  +
Sbjct: 356 RTLAQITGPGER-TVAVLGAMSELGEYADEEHDRVGLLAVRLRIQRIVVIGPEARRMYLE 414

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           A+ +        +    D  + ++ + L DGD V+VKSSNS G 
Sbjct: 415 AIAQGSWDGEAVFFADADAAYDYLATELRDGDRVLVKSSNSAGL 458


>gi|162148957|ref|YP_001603418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787534|emb|CAP57130.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 469

 Score =  217 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 162/471 (34%), Positives = 249/471 (52%), Gaps = 10/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LWT   L  A  G   G  P   V G+SID+R++AP + F A+ G + DGH  +  A
Sbjct: 1   MTVLWTRAALQDATGGTFTGQAP-VAVTGVSIDTRTLAPGDLFIALAGENSDGHAHVRAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +++   V    S    +  V D + ALN L   AR R    ++A+TGSVGKT
Sbjct: 60  LDQGAAAAMIHDPTVLGTDSDDPRLLRVPDTMAALNALGRYARTRFTGRMVAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML +AL +I  T+    SYNNH GVPLTLAR+P+D  F + E+GM+H GEI  L  
Sbjct: 120 TTKEMLRLALGAIGPTHCAAASYNNHWGVPLTLARLPMDAAFCVCEVGMNHPGEIAPLAV 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +VRP +A++TTIA AHL +   +E IA  K+++         I +  DD+  + + A+  
Sbjct: 180 MVRPLVALVTTIAGAHLGHMGSLEAIAREKSDL-IATLPPAGIAIVPDDATGQPIFAEQA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    T++  G+  ++   +      +E S   V + G+S+ V  +  G H+ +N    L
Sbjct: 239 ARARATLWRAGERTDSTVAVSDVALDAEGSSFTVTIDGRSVPVRLNAPGRHLVRNAATAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+ L AD+ TA  AL+ F P  GRG        +    L+DESYNA+  S++++++VL
Sbjct: 299 AAVAALGADIATAATALADFRPGAGRGALKPILGGRAA--LLDESYNASVLSVRSSLAVL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +       R+AVLGD+ E+G  +++ H  L     L +   V+ SG  +  L D LP 
Sbjct: 357 GLLPATR---RMAVLGDIRELGAFARAEHESLL-SAVLAHADLVFCSGPDMKYLFDLLPP 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           S    ++     L   ++ ++   DV++VK S       ++++L    PA 
Sbjct: 413 SRRGAWAPDAASLAPLVRDAVAQDDVILVKGSFGSRMRDVVSVLTA--PAT 461


>gi|239501972|ref|ZP_04661282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Acinetobacter
           baumannii AB900]
          Length = 466

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 124/459 (27%), Positives = 198/459 (43%), Gaps = 25/459 (5%)

Query: 16  GHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G+     +PQ  +  I  DSR     +AF A+KG  +D H+F+      G  + +V   +
Sbjct: 25  GYWHKDQIPQTEIKRILTDSRHAESGDAFLALKGERFDAHNFVGQVAANGCQVAIVERPI 84

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSI 133
            A      I    V D   AL +L    R ++ +  +IA+TGS GKTTTKEML   LS +
Sbjct: 85  DAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKTTTKEMLGSILSRL 139

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
             T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + +V+PH+A I  I 
Sbjct: 140 APTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSKIVQPHVAGILNIG 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            AHL  F G + I  AK+EI+  +   G   +   D F   ++    A     I SFG  
Sbjct: 200 TAHLGEFGGRDGICRAKSEIYRHILPQGVAIVPQQDDFTAEIRE---AAKSHQIMSFG-- 254

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D    + +   + +  ++     S  V     G H  QN    +     L   ++  
Sbjct: 255 AGGDVFATEIELLPQSANFQLHTPQGSSLVRLPFAGEHNVQNATAAVAFALALGVSLEDI 314

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +K L      +GR    +    +     ID++YNANP SM       +Q+     G ++ 
Sbjct: 315 VKGLEQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAAAQVLLQQNGIKVM 366

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           V+GD+ E+G+ S   H DL   L+   + H+   G    A  +     S  +   +T   
Sbjct: 367 VMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGLHSTKLKAFQTQAE 426

Query: 433 LFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
              F+ + +          + K S       L+  L+E+
Sbjct: 427 ALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 465


>gi|225872738|ref|YP_002754195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793712|gb|ACO33802.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 465

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 213/468 (45%), Gaps = 16/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   + +          P     G SIDSR++A  + FFA+KG  +DGHDF+  A+ +G
Sbjct: 3   LTLEQIARWCSAELRSSQPARPATGYSIDSRTLATDDLFFAVKGDRFDGHDFVAAAIHRG 62

Query: 65  AGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A   VV+    A +  L     +  VDD L AL +LA A R      ++ +TGS GKTTT
Sbjct: 63  AVGAVVSRARAAELLPLIDHASLLLVDDPLAALQQLAAAVRRHWGKRVVGVTGSAGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   L +  +     G+ NN+ G+PL L R+  + +  + E+GM+H GEI  L  + 
Sbjct: 123 KEAIAAVLGAGYRVLKSQGNLNNNFGLPLQLLRLDTEDEIAVIEMGMNHAGEITALARIA 182

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            P   V+T +  AH+ NF  GI  +A AK E+ + L            +  +   ++   
Sbjct: 183 MPDWGVVTNVGKAHVENFTDGIAGVARAKYELVQALPAE----GIAFLNCDDAYVSQFGR 238

Query: 242 LGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                +  FG+   A  ++ +     +E + + V  +G+   +  H +G H   N L  L
Sbjct: 239 DFHGRVILFGRGPCAHLRVEQLENLGAEGTRLTVSAEGRCATLHLHLLGEHNVSNALAAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +       ++   +AL          ++    +     +++++ YN+NP ++KA I+ L
Sbjct: 299 AVGLAAEIPLEIGARALESLR----ADEKRGQIIPWRGASIVNDCYNSNPEALKAMIATL 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDALP 419
             +      R I V G+M E+G  + + H    E  +   +  V    G     +  A  
Sbjct: 355 MGMP---GNRHILVAGEMLELGAEAPALHAACGEAAAAAKVDIVVGVRGAASQIVDAARR 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 Y ET +   ++++++L +GD V++K+S      R +++L  E
Sbjct: 412 AGADAVYVETPEDAGIWLKANLREGDAVLLKASRGVRLERALDVLQAE 459


>gi|302528473|ref|ZP_07280815.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
 gi|302437368|gb|EFL09184.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sp. AA4]
          Length = 479

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 113/474 (23%), Positives = 180/474 (37%), Gaps = 53/474 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+R + P   F A+ G   DGHDF   AV+ GA  V+   +       +  P   V
Sbjct: 4   SVEFDTRKLGPGGLFLALPGERVDGHDFAAKAVEAGAVGVLAARE-------VDAPAIVV 56

Query: 89  D----------------DV---------------LGALNKLAVAARLRSKATIIAITGSV 117
                            D                   +++LA         T+I +TGS 
Sbjct: 57  PPLPPGQANSGSVALTGDTDGSGAAVLAALAKLARHVVDRLAAG-----GLTVIGVTGSS 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+++   +  +  T A  GS+N+ +G P T  R      F + E+    +G I  
Sbjct: 112 GKTSTKDVIAQLIEPMGPTVAPPGSFNSELGHPWTALRADASTKFLVLEMSARGVGHIAA 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P I  +  +  AH+  F   E IA AK E+ E L + G   LN DD     + +
Sbjct: 172 AAETTPPRIGAVLNVGSAHVGEFGSREGIAKAKGELVEALPEDGLAVLNLDDPLVAAMAS 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A  +    S G    A       +         +        V     G H   N L
Sbjct: 232 RTKARIVGVGESAGAQIRAADITVDAEARP---SFRLITPEGEAPVTLPLHGEHHVGNAL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               I   L A  +    A  +   +    +R          T++++SYNANP S++A +
Sbjct: 289 SAAAIARELGATTEEI--AQRLSSLQRRSERRMEVTTRADGVTILNDSYNANPESVRAGL 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+ +      R  AVLG M E+GE S + H  +  ++   NI  + + G    A+   
Sbjct: 347 KALASM-SRSGRRAWAVLGVMGELGEDSVNAHDSIGRLVVRLNIEKLVVVGQEAAAMHQG 405

Query: 418 L----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                           ++     +   L  GDVV+VK+S + G +R+   LL +
Sbjct: 406 AFQEGSWGEESVLVPDVEAAVAVLHDQLRPGDVVLVKASKAAGLWRVAEALLAD 459


>gi|253571213|ref|ZP_04848620.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251839166|gb|EES67250.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 432

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 191/435 (43%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    V++    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEG--DQRYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIGV
Sbjct: 74  DCLQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSRSHNILYTLGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + D  + E+G +H GEI+FL+ +  P   +IT +  AHL  F   E +   
Sbjct: 134 PSTLLRLKTEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L K     +        L+   + A G+  I    +                 
Sbjct: 194 KGELYDFLRKKEGSTVFIHHDNAYLM---NIAEGLNLIPYGTEDDLYVNGRITGNSPYLT 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +    GKS +V    IG +   N L  + I      +     +ALS + P+  R + 
Sbjct: 251 FEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALSGYTPQNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N    TLI ++YNANP SM AA+     +       ++ +LGDM E+G  S + H
Sbjct: 311 KKTDDN----TLIIDAYNANPTSMMAALQNFRNMEVP---HKMLILGDMRELGAESAAEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       VWL G    A + +            +  +   +++    G  +++
Sbjct: 364 QKIADYLKECAFEKVWLVGDQFAAAEHSFQT------YPNVQEVIKELEADKPKGYTILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SN      +++ L
Sbjct: 418 KGSNGIKLCSVVDYL 432


>gi|282880729|ref|ZP_06289430.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
 gi|281305391|gb|EFA97450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella timonensis CRIS 5C-B1]
          Length = 446

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 120/446 (26%), Positives = 197/446 (44%), Gaps = 26/446 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V++                V+
Sbjct: 16  VTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQK--EYQIQQDERYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAHLQGFGSFEGVKRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KAE+++ +E        + +     L+    A                    + K CS  
Sbjct: 194 KAELYDYMEVNKPNGKVFINQDNPHLQEMFQAHCPHVHRISYSQTQQTGVSYQGKICSNN 253

Query: 270 SWMEVQLQG-----------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++  Q +            +  EV  H +G +   N+L  + I   L         AL+
Sbjct: 254 PFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHYLGVQPHEINHALT 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +      N     LI ++YNANP SM+AA+   +Q+    +   +A+LGDM
Sbjct: 314 HYTPSNNRSQLEVTKHNN----LIVDAYNANPTSMEAALVNFAQMQVAPK---MAILGDM 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+GE+S + H  +  +L+   I  +WL G           +       + ++ +   I+
Sbjct: 367 RELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQK------YKNIEEVKETIR 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
                G  +++K SN    ++L  LL
Sbjct: 421 QQQPQGFYILIKGSNGIKLFQLPELL 446


>gi|257466673|ref|ZP_05630984.1| histidinol-phosphatase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 427

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 113/442 (25%), Positives = 185/442 (41%), Gaps = 34/442 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  +  + +DSR I     FFAI+    +G+ ++  A+ KGA LV+ +           
Sbjct: 16  PKIKIQNVVMDSRKITEGSLFFAIQ----NGNQYVQEALDKGASLVIADR-----YSGNH 66

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             V  V++ +  + +LA   R   K  +IAITGS GKTTTK+++   LS   +T   +G+
Sbjct: 67  EKVIKVENTILVMQELAEEYRRCLKTKMIAITGSNGKTTTKDIIYAILSKTFQTKKTLGN 126

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           YNNHIG+P T+  +    +F + E+GMS  GEI  L  + RP   +IT I  +HL     
Sbjct: 127 YNNHIGLPFTILNLEEKDEFAVLEMGMSSFGEIDLLGKIARPDYGIITNIGDSHLEFLKT 186

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E +  AK E+   L +   I         ++   K  A               D +   
Sbjct: 187 RENVFKAKTELLPYLPEGCFITSGD-----DVFLKKIPA----------IHVGYDERNDY 231

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                ++       Q    +      G H   N  M + I   +  D  T  + L     
Sbjct: 232 RIFGYKKKDRRSSFQLNDKQYEIPLEGKHNVMNAAMGIAIAETIGMDSKTIQQNLLQIEL 291

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R +R      +     I+++YNA+P SM  A+  L + +   +   IAVLGDM E+G
Sbjct: 292 SPMRFERSEYQGTK----YINDAYNASPISMGVALDSLVETTAECK---IAVLGDMLELG 344

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
           E   +FH D+ E     ++  + L G  +             V + E  + +  +++   
Sbjct: 345 EKEVTFHKDVIEKAISCSLQAILLYGPRMKKALQEFSNIPNKVLHFEKKEEIKDYLKQFP 404

Query: 442 VDGDVVVVKSSNSCGFYRLINL 463
                V++K+S       +I  
Sbjct: 405 RK--TVLIKASRGMKLEEIIER 424


>gi|284991688|ref|YP_003410242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064933|gb|ADB75871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Geodermatophilus
           obscurus DSM 43160]
          Length = 464

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 125/466 (26%), Positives = 191/466 (40%), Gaps = 23/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  ++ +A+ G             +++DSR++AP + F A+ G   DGHDF+  A
Sbjct: 1   MIEM-SLAEVAEAVGGRLTPDAAGTVPGKVTVDSRAVAPGDLFVAVPGERVDGHDFLTAA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSV 117
              GA   +            ++P   VD+ + AL +LA A   R        I ITGS 
Sbjct: 60  AAAGAVAALTTRP------DGALPCVVVDEPVAALGRLAAAVHTRLAGGDLVTIGITGSS 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L++   T +  GSYNN IG+PLT+     D  F + E+G    G I  
Sbjct: 114 GKTSTKDLLGQVLATAGATVSPPGSYNNDIGLPLTVLDADEDTRFLVLEMGSRGRGHIAR 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + RP + V+  +  AHL  F   + IA AK E+ E L   GT  LN DD     +  
Sbjct: 174 LCRVARPDVGVVLNVGSAHLGEFGSADGIAVAKGELVEALPAEGTAVLNADDPRVIGMAP 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++ A  + T  S G    A+         +  + +    +      V        A +  
Sbjct: 234 RTRARVVTTGRSAGADVRAEDVALDEAGRAGFTLVAGGERAAVRLQVVGEHQVANALSAA 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  +    V  A+ A            R          T+++++YNANP SM+AA+
Sbjct: 294 GAALAAGMAPDAVAAALSAAEPRS-----RWRMEVTRRDDGVTVVNDAYNANPESMRAAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD- 416
           + L   +     RR+AVLG M E+G  +   H  L        +  V   G   + + D 
Sbjct: 349 AAL---AGLPARRRVAVLGAMAELGPGAADEHERLGRDAVAAGVDLVVAVGPDAVGIADG 405

Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                                   +   LV GDVV+VK+S S G  
Sbjct: 406 ALAAGAREGEGAVRVPDRAAARELLTEVLVPGDVVLVKASRSYGLE 451


>gi|254246422|ref|ZP_04939743.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871198|gb|EAY62914.1| UDP-N-acetylmuramyl pentapeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 468

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHAPADVAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAERQNDAQIVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  +    +    T++D++YNANP SM+AA
Sbjct: 293 AATAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++         V+VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|172040889|ref|YP_001800603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852193|emb|CAQ05169.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 500

 Score =  216 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 130/501 (25%), Positives = 200/501 (39%), Gaps = 32/501 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++     G  I G   +  V G +  DSR +AP   F A+ G   DGHD++ 
Sbjct: 1   MIEL-SAGEIAAITGGELIDGAAAETIVAGPVEFDSRKVAPGSIFMALPGATVDGHDYVA 59

Query: 59  HAVQKGAGLVVVNTD--MVASIGSLSIPVFGVDD--------------VLGALNKLAVA- 101
            A ++GA L +V       A +   S    G D+              VL A++KLA   
Sbjct: 60  AAGEQGAALAIVGRPVGYPALLAPASERAEGTDNSAVFGADEEGYGAAVLAAVDKLARHN 119

Query: 102 ---ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                      ++ +TGS GKT+TK+++   L  + +T A  GS+NN IG+P T  R   
Sbjct: 120 TDVLADEEGMVVVGVTGSAGKTSTKDLIGALLGDLGETVAPPGSFNNEIGLPYTALRASR 179

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E+    +G I  LT +  P I V   +  AHL  F   E IA AK E+ E L 
Sbjct: 180 GTKFLVSEMSARGVGHIAHLTTVTPPKIGVELNVGSAHLGEFGSREAIAQAKGELVEALP 239

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-----IYSFGKSKNADFQLRKWKQCSEQSWME 273
                 +   ++  + + A  H    +             + AD+     +         
Sbjct: 240 AAEDGGIAILNADDDAVIAMRHRTRARVVTFALDERSKTGERADYWASDIRLDEVARASF 299

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    V      +   Q           + + +  A  A  + +       R    
Sbjct: 300 RLHHPYGEPVDIRLGVFGAHQVSNALAAAAVAVESGMLPASVARVLGNHVAASANRMDVR 359

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQIS-PHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             +   T+I++SYNANP SM+A I  L+  +    E    AVLG M E+GE S   H +L
Sbjct: 360 TRRDGATIINDSYNANPESMRAGIDALAYTAGGRPEASSWAVLGQMGELGEESAEEHTEL 419

Query: 393 AEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L    I H  + G   +  A+ DA     +     E +D    F+   +   DVV+V
Sbjct: 420 GKFLGTRGIDHAVIVGTGVNQRAIADAAREHGVDTRSVEDVDAAVNFVDQHVKPKDVVLV 479

Query: 450 KSSNSCGFYRLINLLLEEFPA 470
           K+S S G + +   LL +  A
Sbjct: 480 KASYSDGLWAVAEGLLADEGA 500


>gi|126662328|ref|ZP_01733327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
 gi|126625707|gb|EAZ96396.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteria bacterium BAL38]
          Length = 428

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 124/437 (28%), Positives = 197/437 (45%), Gaps = 23/437 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + +S D+R I     F A+KG ++D + F   A++KGA  VV++     S   +      
Sbjct: 15  SSVSTDTRKIEKNSLFVALKGDNFDANTFSKEALEKGAKYVVID----NSKFYIDERTLL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L AL +LA   R     TII +TGS GKTTTKE++   L     T A IG+ NNHI
Sbjct: 71  VEDSLIALQELAKFHRKHLGLTIIGLTGSNGKTTTKELIHAVLLKKYNTLATIGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R   D + GI E+G +H  EI FL  + +P    IT    AHL  F G+E + 
Sbjct: 131 GVPLTLLRFTKDTEIGIVEMGANHQKEIEFLCEIAQPDFGYITNFGKAHLEGFGGVEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++  ++          D   +            T YSF      +          
Sbjct: 191 KGKSELYNYIKNNNKTVFINADDPLQK-----EKSNNLTTYSFST----NETEADVTISK 241

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   VQ+      +  H IG + A N+   + I            +A+  + P+  R 
Sbjct: 242 VVANPMVQISFNDETINSHLIGIYNANNINAAITIGHYFKISDKLIKEAIENYIPENNRS 301

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N+    +I ++YNANP+SM+AAI+   Q+  + +   IA+LGDM E+GE S  
Sbjct: 302 QLIEKNGNK----IILDAYNANPSSMQAAITNFIQLEDNSK---IAILGDMFELGEESLL 354

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + E L   N    +  G              ++ + E  + L  F++++     ++
Sbjct: 355 EHKKIIEFLVNENKITTYFIGKD---FYANKVNHSNLKFFENFEILSDFLKNNPPTNSLL 411

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      + + ++
Sbjct: 412 LIKGSRGMALEKTLQII 428


>gi|220918992|ref|YP_002494296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956846|gb|ACL67230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 468

 Score =  216 bits (549), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 137/466 (29%), Positives = 204/466 (43%), Gaps = 6/466 (1%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P +T  +L  A +G  +G  P   V G+S D+R+++P + F A+KG  +D HD +  A 
Sbjct: 7   TPQFTPDELAGATRGRWLGAPPSA-VAGVSTDTRTLSPGQLFVALKGERFDAHDHLEAAA 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             GA  +VV+    A+  +       V D L AL  +A   R R    +I +TGS GKTT
Sbjct: 66  AAGAAALVVSEAWAAAHPAPPRAALAVADPLAALGAIARHHRCRFGIPVIGVTGSNGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T+EM+   L++        G+ NN +GVPLTL  +       + E+GM+H GEI  L  +
Sbjct: 126 TREMIAAILATRGPVLKTEGNLNNEVGVPLTLFGLEDAHATAVIEMGMNHPGEIARLAAI 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P + V+T  APAHL     ++ +A AKAE++EGL   G   +N DD     +  +  A
Sbjct: 186 AQPQVGVVTLAAPAHLEGLGTVDAVADAKAELYEGLPAGGIAVVNADD---ARMLKRGVA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G + +            +           +   L   + EV  H  G   A N      
Sbjct: 243 SGRRMLTFASGRGRRGDVVVLEVVSQSVEGLRFVLGVGNREVPVHIPGLVGAHNARNAAA 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                 A   T  +           G+R R         L+D+ YNANPASM AA+ VL 
Sbjct: 303 AACAAIAVGCTDREIAQGLAAVRPVGRRLRLERLPSGVQLVDDCYNANPASMSAALDVLR 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALP 419
            ++     R  AVLGDM E+G      H  L    +   ++ +   G      A      
Sbjct: 363 DLAAAPGARAFAVLGDMLELGAFEAEAHRALGAEAAAAGVAVLAAFGPRARATAEAAGAA 422

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 ++E +D L  F++  L   DV++VK S      RL+  L 
Sbjct: 423 GLAETFHTEDLDRLVAFVRERLRPTDVLLVKGSRGMKLERLVEALR 468


>gi|311742802|ref|ZP_07716611.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314430|gb|EFQ84338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 458

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 191/470 (40%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L     +  A  G + G   +  V G  +IDSR + P   F AI G H DGH +   
Sbjct: 1   MIEL-DLEGIAAATGGTAHG---RARVTGPATIDSRDVPPGGLFVAIPGEHVDGHAYAEA 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
           AV+ GA  V+    + A       P   V D   AL  LA A   R    + + +TGS G
Sbjct: 57  AVRAGAAAVLCTRPVAA-------PHVLVPDATVALGLLARATHDRLDRLSTVGLTGSSG 109

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   L  +  T A  GS+NN +GVPLT+ R      + + E+G    G I  L
Sbjct: 110 KTSTKDLLAHVLEPLAPTVAPTGSFNNELGVPLTVLRADPSTRYLVVEMGARGRGHIAAL 169

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P +AV+  +  AH   F  +++ A AK E+ E L   GT  LN DD     +  +
Sbjct: 170 CRISPPDVAVVLNVGTAHQGEFGSVDDTAVAKGELVEALGPGGTAVLNADDPRVAAMAGR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +    +FG+    D +L      +          G   E            +   
Sbjct: 230 TAGQVL----TFGR--GGDVRLVDLLTDAAGHPRITLAHGPDRETFVLPQIGGHHGSNAA 283

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V++        + A           +  R         ++D+SYNANP S+ AA+ 
Sbjct: 284 ATAAVAVALGVDLATVAARLATATVRSPHRMARHV-RPDGLVVVDDSYNANPESVAAALR 342

Query: 359 VLSQI-SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            ++ + +P   GR + VLG+M E+G  S   H  +  +     I  V   G     + + 
Sbjct: 343 SVADLGAPGDGGRTVVVLGEMLELGADSADHHRRIGALARELGIGLVVAVGPGASPVVEG 402

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                       +      +   +  GD+V+VK+S S    R++  LL +
Sbjct: 403 AGALATG--VPDVAAAVELLHEQVGPGDLVLVKASRSARLERVVTALLAD 450


>gi|307566043|ref|ZP_07628501.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
 gi|307345231|gb|EFN90610.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella amnii CRIS 21A-A]
          Length = 441

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 191/443 (43%), Gaps = 25/443 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A++ G    +V+    A   +    +  V 
Sbjct: 16  VTTDSRNCPKGSIFIALKGASFNGNAFAKTALENGCSYAIVDESKYAEPDNE--RIILVS 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A  +LA   R      +I ITG+ GKTT+KE+++  L+   K +  +G+YNN +GV
Sbjct: 74  DALIAYKELAREHRRSMNIPVIGITGTNGKTTSKELISAVLAEKYKVHHTLGNYNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  M    +  + E+G SH  +I+ L   V P   +IT +  AHL  F   E +   
Sbjct: 134 PRTLLEMTTKDEIAVIEMGASHPTDIKKLVTYVEPTCGLITNVGRAHLEGFGSFEGVKKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+    +     +     L   +       I ++G+   AD +      C   
Sbjct: 194 KGELYDYLKAHNALLF--LNESNPDLVEMATERNFDRIITYGQDDTADVKGEVISCCPFL 251

Query: 270 SWMEV--------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +           Q+     EV  + IG +   NML  + I      +      AL  + 
Sbjct: 252 KFSWQAALSLGTEQVFSAIYEVQTNLIGAYNLDNMLAAVTIGLHFGVEPHKICHALESYT 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P   R +  +   N     LI ++YNANP+SMKAAI     +    +   +A+LGDM E+
Sbjct: 312 PTNNRSQLIKTKDNN----LIVDAYNANPSSMKAAIENFRLMEVKNK---MAILGDMHEL 364

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ +   H  + + +    I +VWL G +          + H      ++ +   I    
Sbjct: 365 GDATAEEHQRIVDQIDASKIENVWLVGENFAKT------NCHFRKFANVEEVKAAIALKK 418

Query: 442 VDGDVVVVKSSNSCGFYRLINLL 464
                +++K SN+   + L  LL
Sbjct: 419 PTEHYILIKGSNTTKLFELPKLL 441


>gi|227548909|ref|ZP_03978958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079037|gb|EEI17000.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 518

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 136/503 (27%), Positives = 212/503 (42%), Gaps = 39/503 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M PL     + +   G       P   V+G +  DSR I P   F A+ G H DGH+F  
Sbjct: 1   MIPL-ELAAIARITGGRLSDDADPHAVVDGFVEFDSRKITPGGLFVALPGKHVDGHNFAR 59

Query: 59  HAVQKGAGLVVVNTDM--------VASIGSLSIPVFGVDD-------VLGALNKLAVAAR 103
            A+ +GA  V+   D+         A+           +D       V+  ++KLA    
Sbjct: 60  DAIAQGAAGVLAAKDVGVAAVIMPKAAKREGDNSGLAANDPDGSAAGVVSGMSKLASYVA 119

Query: 104 L----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    +I+ ITGS GKT+TK+++   LS+  +T A  GS+NN +G P T+ R    
Sbjct: 120 STLTAEHGLSIVGITGSAGKTSTKDLVASVLSAAGQTVAPPGSFNNELGHPYTVLRCTES 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+    +G I  L  +  P   V+  I  AHL  F   E IA+AK E+ E L  
Sbjct: 180 TKFLVAEMSARGIGHIAHLATIAPPKFGVVLNIGSAHLGEFGSKENIAAAKGELVEALPS 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +   ++   L+   +     + +   G+   AD+                     
Sbjct: 240 AAEGGVAILNADDPLVAGMAPRTRARVVTFSGQHGAADYYATDISLDDVTRASFTLHSPH 299

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +         +   Q           + + +D A  A S+       G R          
Sbjct: 300 NEPQRVELNVFGAHQVSNALAAAAVGIESGIDAATVARSLSSAHGESGNRMDVQTRADGV 359

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLAEVLSL 398
           T+I+++YNANP SM+A I+ L   +    G R IAVLG+M E+G  S S H +L   L+ 
Sbjct: 360 TVINDAYNANPDSMRAGIAALGFTAAARPGVRSIAVLGEMGELGGDSVSAHRELGNELAR 419

Query: 399 YNISHVWLSGFH--VLALKD-ALPRSIHVHYSETMDGLFLFIQSSL------VDG----- 444
           Y ++H+   G +  + ALKD A  R I+V  +  ++     +Q+ L       +G     
Sbjct: 420 YRVTHLVAVGDNDAMDALKDRARDRGIYVASARDVEEATSLVQAILSVPPMGEEGWYERD 479

Query: 445 --DVVVVKSSNSCGFYRLINLLL 465
             DVV+VK+SN+ G + + N LL
Sbjct: 480 ARDVVLVKASNALGLWAVANALL 502


>gi|189460410|ref|ZP_03009195.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
 gi|189432882|gb|EDV01867.1| hypothetical protein BACCOP_01049 [Bacteroides coprocola DSM 17136]
          Length = 821

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 196/463 (42%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++   I    IG   Q  ++ I  DSRS+    +  FFA+K    DGH +I     +
Sbjct: 4   SIEEITSVIGAERIGK-HQATIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIPELYAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 V + L AL +LA   R + +  ++ ITGS GKT  K
Sbjct: 63  GVRNFVVTDVPEQLSHYADANFLQVGNTLKALQRLAAKHREQFQVPVVGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   LS  K       SYN+ IGVPL++  M    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWIYQLLSPEKVITRSPRSYNSQIGVPLSVWMMNEHTELGIFEAGISEMGEMEALQPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NFS ++     K ++F   +    I  N D+       +KS    
Sbjct: 183 PTIGVLTNIGWAHQENFSSLQGKCMEKLQLF---KDCDVIIYNGDNELISSCVSKSLFTS 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       + K ++    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSM-KDNERPLFIEKIEKDDTGTTVKYRYLGFLKEYRIPFIDDASIENSLNALAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + ++   P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVSPEDIAERMAHLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     RR  +L D+ E G+ S+  +  +A+++    +  +   G  + A          
Sbjct: 356 TEDKGRRRTLILSDILESGQPSKLLYRQVADLVHSRKVDRIIGVGEEISAAASRFEIDKR 415

Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  T   L    I SSL   +VV++K +    F  + +LL 
Sbjct: 416 --FFRTTAELIESGILSSLR-NEVVLIKGARVFHFDDITDLLE 455


>gi|158318858|ref|YP_001511366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158114263|gb|ABW16460.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 447

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 129/466 (27%), Positives = 192/466 (41%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLGEIAAVVGGTVAGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            + GA   + +           +P   V+D   AL  LA     RLR   T++ +TGS G
Sbjct: 60  GRAGAVATLGSRPTP-------LPTVVVEDAQSALQALAAHVVARLRDGLTVVGLTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LSS   T A IGS NN +GVPLT+ R      F   E+G  H+G+I  L
Sbjct: 113 KTSTKDLLAAVLSSAAPTIATIGSLNNELGVPLTMLRADPATRFLALEMGARHIGDIAEL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P IAV+  +  AHL  F   E IA  K E+ +GL   GT  L  DD     +++ 
Sbjct: 173 TGLVAPDIAVVLNVGQAHLGEFGSREAIARTKGELVQGLAPGGTAVLGADDPRVVAMRSL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +    +FG+ ++AD ++                   +   V   +          
Sbjct: 233 TDGPVL----TFGRVEHADVRVLDLALDRLGRPSFTLRTADASAPVTLPLVGGHQALNAS 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +          A              R        TL+++SYNANP S +AA+ 
Sbjct: 289 AAAAAGLAAGVPLDVAAAALATASLSQWRMELRDLA--CGATLLNDSYNANPDSTRAALD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++    GRRIAVLG+M E+G+ S++ H  + E  +      V   G     + D  
Sbjct: 347 A---LAAIEGGRRIAVLGEMRELGDGSEAEHRAVGEYAASR-ADVVVAVGEAARPIADGA 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                V      +    +++  L  G+VV+VK+S       +   L
Sbjct: 403 --GERVVALADNNAAVDWLRGHLAAGEVVLVKASRGARLDEVAVAL 446


>gi|15643008|ref|NP_228050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
 gi|4980734|gb|AAD35327.1|AE001707_14 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           maritima MSB8]
          Length = 426

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 103/446 (23%), Positives = 182/446 (40%), Gaps = 24/446 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                   ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S      
Sbjct: 3   DLLTRRFVLNSKEVREGDVFVAVKGKRFDGHDFIDEALRNGAYAIIAERKTVNSD----- 57

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +F V+  +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ 
Sbjct: 58  RIFLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N   G+PL++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   
Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTR 177

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I   K EI +  ++       +DD        +           F   +  D  L+ W
Sbjct: 178 ERIMETKMEIIKHSKENAIAVTLFDDPDLRKEVPR------YRNTLFFGKEGGDSVLKDW 231

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +  E +       V   G            L I + L                 
Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNG-----GQLLNIAASLCVMRTLGETVDIFDLAS 286

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                       +    ++D++YNA+P + + +I  L +      G++ AV+G M E+GE
Sbjct: 287 LKTVPGRFNVREKKGVLIVDDTYNASPEAFQTSIEALLRFP----GKKFAVVGAMKELGE 342

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S+ FH +L E L++ +  +V+LS      +K        +  S+  + +   + + +  
Sbjct: 343 RSKEFHEELGERLNVLDGVYVFLSEPEAEWIK----SKKIILKSDDPEKIAKDLATRVKK 398

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GDVV+ K+S +    R++ +  +E  
Sbjct: 399 GDVVLFKASRAVRIERVLEMFEKELE 424


>gi|332829642|gb|EGK02288.1| hypothetical protein HMPREF9455_01558 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 200/435 (45%), Gaps = 22/435 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+      FFA+KG +++G+++   A+  G    +V+    A+  +    +  V+
Sbjct: 16  VSTDTRNSPKDSIFFALKGANFNGNEYAEKAIDSGCSYAIVDESKYATRPN----IILVE 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L KLA   R + K  +I ITG+ GKTTTKE++T  LS      A  G+ NNHIGV
Sbjct: 72  DCLDTLQKLANHHRKQLKTPVIGITGTNGKTTTKELITSVLSQEYNVLATQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  I E+G SH+GEI+ L+ +  P+  VIT I  AH+  F   E +  A
Sbjct: 132 PLTLLRIKKEHEIAIIEMGASHVGEIKVLSEMAMPNYGVITNIGHAHIEGFGSYENVIKA 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E +  T          +   L  +         Y   +      ++   +   E 
Sbjct: 192 KGELYEYIRSTRD--GKIFIDYDNSLLREMSEGITSIYYGLEEDLFISGKVLSIRPFLE- 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E +   +  +V  + IG +   N L  + I   L        KA+  + P   R + 
Sbjct: 249 --FEWKFGTRRNKVKTNLIGEYNLSNALAAITIGKYLGVKASLICKAIEEYQPTNNRSQL 306

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  +   H
Sbjct: 307 KETDRNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTDLEH 359

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ +S +N   V   G +   +    PR       + +D L  +++ + +    +++
Sbjct: 360 QKVADYVSHHNFDRVIFVGDNFSRIITDYPR------FKDLDSLKYYLKENPIADSYILL 413

Query: 450 KSSNSCGFYRLINLL 464
           K S      R I++L
Sbjct: 414 KGSRGVQLERCIDVL 428


>gi|148358647|ref|YP_001249854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
 gi|148280420|gb|ABQ54508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Legionella
           pneumophila str. Corby]
          Length = 406

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 127/420 (30%), Positives = 189/420 (45%), Gaps = 19/420 (4%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G  +DGHDFI  A  KGA   VVN      I  + IP F V   L AL K+A A R    
Sbjct: 2   GERFDGHDFIKEAEAKGASAAVVNR----LIDGVHIPQFVVVSPLMALAKIAAAHRQEMS 57

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IIA+TGS GKTT KEM+   L     ++A  G+ NNHIGVPL++  +     + +FEL
Sbjct: 58  CPIIALTGSNGKTTVKEMIATILPQ--PSHATKGNLNNHIGVPLSMLALNKQHRYAVFEL 115

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G +H GEI     +V+P +++I  IAPAH+  F  I+ +A +K EI +GL  TG   +N 
Sbjct: 116 GANHPGEIAHTVGIVQPDVSLINNIAPAHVEGFGSIDGVARSKGEIHQGLSPTGVAIVND 175

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHH 286
           DD++            I     F     AD   +  +  +        +     +E+   
Sbjct: 176 DDAYAHFWDDLIADKKILR---FSSLHPADIYAQDIRLDTHGRAHFTLVLPNSRVEIELQ 232

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L        +    +   + L+ F   +GR         Q   T+ID++Y
Sbjct: 233 VPGLHNVRNALAAAACCYAVGISGNDIQRGLAHFGGVKGRMTM---LSGQNQSTVIDDTY 289

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S+  A+ VL        GR+I V GDM E+GE +   H ++        I  +  
Sbjct: 290 NANLRSVLTALEVL----SGRPGRKIFVFGDMGELGEWTTQHHREVGIAARQLGIDKLMS 345

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G H      A        +  + + L   +++ L     V+VK S S     +++ L++
Sbjct: 346 CGLHSELASQAFGEG--GQHFCSQEELIEVVKNDLTPDTTVLVKGSRSSAMENVVHRLVQ 403


>gi|157803551|ref|YP_001492100.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
 gi|157784814|gb|ABV73315.1| hypothetical protein A1E_01850 [Rickettsia canadensis str. McKiel]
          Length = 502

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 138/515 (26%), Positives = 239/515 (46%), Gaps = 69/515 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L +A+             N +  +S+ +   + F A+KG + DGHD++L A
Sbjct: 1   MI--WNSETLSKALGITI---SNSINCNEVQFNSKDVKKGDLFIALKG-NGDGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-------- 112
           + KGA  ++V+  +     +    +  VDD   AL K+A+  R  SKA  IA        
Sbjct: 55  IDKGANAIIVSKHIDIVDKN---KIILVDDCFEALQKMALYKRGSSKAKFIAITGSVGKT 111

Query: 113 -------------------------------------------ITGSVGKTTTKEMLTIA 129
                                                      +  +     T ++    
Sbjct: 112 STKGALKTLLTETSDKSLHLLYNEANKEEFEGNTEYSTTEYKKVCDAASTRLTYKLPLEV 171

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+I
Sbjct: 172 SYIKGLVFASRGNFNNHLGLLINLASMSDDTEYAIFELGMNHKGEIRELVQILKPNIAMI 231

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++ AHL  F+ +E+IA AK EIFE   K     +N + + +  + +    L I  IY+
Sbjct: 232 TNVSEAHLEFFNSLEDIAEAKCEIFENFSKNDIAVINANTNCYNKILSILKNLSIDKIYN 291

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG S N   +L  +    +Q  ++ ++  K++E+    I  H A+N +  L I++IL  +
Sbjct: 292 FGASYNTSAELTLYANLGKQVHLKYKINNKTIEITIPFIPRHFAENYIGVLLIINILGKN 351

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D A   L+   P +GRG+     +N     +I + YNA+P SMKAA+  L Q+    + 
Sbjct: 352 LDIAANHLANISPTKGRGEM----INIQNCCVICDYYNASPQSMKAALEYLKQVPAENK- 406

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
              A++GDM E+G+ S++ H +L   +   + S V+L G +   + + LP  I   Y + 
Sbjct: 407 --TAIIGDMLELGQNSEALHKELVPYILDADCSKVFLVGKNTKYIYNLLPFKIAKKYFKN 464

Query: 430 MDGLFLFI--QSSLVDGDVVVVKSSNSCGFYRLIN 462
           +D L   I       + +++++K S      ++++
Sbjct: 465 VDELITHITVTDLFKNNELILIKGSRGIKLDKIVD 499


>gi|206561803|ref|YP_002232568.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
 gi|198037845|emb|CAR53789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diami
           nopimelate--D-alanyl-D-alanyl ligase [Burkholderia
           cenocepacia J2315]
          Length = 468

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 194/474 (40%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHAPAGVAMPMIAGGETRAALGALAHGWRMRFPLPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAERQNDAQIVGRMHGDELAIDTPAGAVTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYRCALNQGFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR   +     +    T++D++YNANP SM+AA
Sbjct: 293 AATAAALGAGVALSAIRQGLEAFEPVKGRLQVKPASVGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++         V+VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|170731879|ref|YP_001763826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815121|gb|ACA89704.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia MC0-3]
          Length = 468

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++        + +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDAGVTFDRVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  +    +    T++D++YNANP SM+AA
Sbjct: 293 AATAAALGAGVALSAIRQGLESFEPVKGRLQVKQASVGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFAFGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++         V+VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFDDVGALVSALFAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|291615178|ref|YP_003525335.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585290|gb|ADE12948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 480

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 137/482 (28%), Positives = 211/482 (43%), Gaps = 38/482 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +      + A+     G       + +S D+R+I   + F A+KG ++DG  F+  A   
Sbjct: 1   MMMLSQAVNALHARMDG--ADVRFSAVSTDTRTIQQGDLFIALKGENFDGARFVAQAAMA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   VVN D         +P+  V+D   AL +LA   R +    ++AITGS GKTT K
Sbjct: 59  GAVAAVVNRDAGLRTQDSGVPLLFVEDTRLALGELAAYWRAQFDIPLVAITGSNGKTTVK 118

Query: 124 EMLTIALSSIKKTYAC-----------------------IGSYNNHIGVPLTLARMPVDV 160
           EML+  L    K  +                         G++NN IG+PLTL R+  + 
Sbjct: 119 EMLSAILRQKIKDDSYDRSLAPRERVGECDDADRFVLATKGNFNNDIGMPLTLLRLRANH 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+GM+H  EI +LT +  P +A++     AHL     +E +A AK EIF GL+  
Sbjct: 179 RYAVIEMGMNHPNEIDYLTRIACPDVALVNNATGAHLQGLGTVEGVARAKGEIFAGLKDD 238

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT  +N DD+   L ++     G   +  F     A+ Q +   Q      + V+     
Sbjct: 239 GTAVINADDAHAALWRS---LAGKHRVLDFSLEHPANIQGKWVVQGYGG-ELLVRTPAGE 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +V    G H A+N L        L     T +  L  F    GR +R +        T
Sbjct: 295 MRIVLQVPGEHNARNALAAATAALALQIPSATIVTGLQGFGGVAGRLQRKQAKNG---AT 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID++YNANPASM AA+ VL+      +G+RI VLGDM E+GE +  FH ++        
Sbjct: 352 LIDDTYNANPASMHAALEVLA----QAKGKRIFVLGDMGELGEDAAQFHREIGISARELG 407

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           I  ++  G                 +  +++ L   + + L      ++K S      R+
Sbjct: 408 IERLFALGTLSAEAVREFGAG--ALHFASVEELNAALDAELDAQTTALIKGSRFMKMERV 465

Query: 461 IN 462
           + 
Sbjct: 466 VQ 467


>gi|54310307|ref|YP_131327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Photobacterium profundum SS9]
 gi|46914748|emb|CAG21525.1| hypothetical
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Photobacterium profundum SS9]
          Length = 468

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/482 (25%), Positives = 192/482 (39%), Gaps = 31/482 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +     L   +    IG      V  +S D+R+++    F A+KG  +D HDF  +A
Sbjct: 1   MIEVQ-LAQLADVLDAELIG--SDITVANVSTDTRTVSAHTLFIALKGDCFDAHDFCQNA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGS 116
           +  G   ++V+  +      + +P   V D   AL  L    +           +A+TGS
Sbjct: 58  MDNGVAALLVSRHL-----PVELPQLVVKDTHQALGLLGAWLKQTMEQDHGLKTMALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT KEM+   LS      A  G++NN IGVPLTL R+  + +F + ELG +H  EI 
Sbjct: 113 CGKTTVKEMVAEILSQKGNVLATAGNFNNDIGVPLTLLRLTPEHEFAVIELGANHQQEIA 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + T+LV+P +A+I  +A AHL  F  +  +A AK EIFEGL                   
Sbjct: 173 YTTNLVKPQVALINNLAAAHLEGFGSLAGVAQAKGEIFEGLTAPLNGSGLSTAIINLDSN 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +  L     ++       D                                +      
Sbjct: 233 DVAMWLPFLAQHAVKTFSLTDISADFSATDIFINSEGRACFTMCTPEGSTDITLTLAGTH 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+   L   ++  A   T  +  +          R   +  +    LID++YNA+ AS+K
Sbjct: 293 NVSNALAAAALAMAVGATLEQVKAGLEQVVNVKGRVDVSHPREGLRLIDDTYNASVASVK 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI +L+  +    G+R  VLGDM E+GE S S H ++AE      +  V+  G     +
Sbjct: 353 AAIDLLASFT----GQRWFVLGDMAELGEDSASLHREVAEYAMTKGLDKVFTFGCASAVV 408

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVVKSSNSCGFYRLINLLL 465
            D         +      L   +Q+ L              V+ K + S     +I  L 
Sbjct: 409 SDL----NQGQHFADKSTLIEQLQAQLHPRNINQQHYQEVTVLAKGARSSRMEDVIAALQ 464

Query: 466 EE 467
           E+
Sbjct: 465 ED 466


>gi|237719731|ref|ZP_04550212.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299147335|ref|ZP_07040400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
 gi|229451000|gb|EEO56791.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298514613|gb|EFI38497.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. 3_1_23]
          Length = 431

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 187/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEG--DQRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K   I   + D+    L   S  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G++ +V    IG +   N L  + I      +     KAL+ + P+  R +
Sbjct: 249 AFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +   N   VWL G    A + +            +  +   +Q     G  ++
Sbjct: 362 HQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEFL 431


>gi|254283739|ref|ZP_04958707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
 gi|219679942|gb|EED36291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [gamma
           proteobacterium NOR51-B]
          Length = 456

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 121/471 (25%), Positives = 199/471 (42%), Gaps = 19/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M      + +   +    +G      V+G++IDSR+++  + F A++G   DGHD++   
Sbjct: 1   MIEALDLNAIATRLGAEVLGATDALRVSGVAIDSRTVSAGDLFVALRGERVDGHDYVAA- 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V    ++ IP   V   +  L+ +A   R + +  ++ ITGS GKT
Sbjct: 60  ----AHAGGAVAAVVEEPVAVEIPQLQVAASVDVLSLIAGMVREQYRGVLVGITGSAGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + K +L   L+    T A  G+ NN IGVPLTL R+   ++F + E+G    G+I  L  
Sbjct: 116 SAKTLLASVLAEAGPTLATSGNQNNEIGVPLTLFRLDPAIEFAVVEMGAGRPGDIAHLCA 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + RP I  +   APAHL+N+  ++ IA  K EI   L        N D  + ++ +    
Sbjct: 176 VARPGITALLNAAPAHLANYDSVDAIARTKGEILAALGSGDLGVFNGDQRYADVWRE--- 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 + +FG SK  D +    +    + +   V+      +V     G     N L  
Sbjct: 233 MAAPAEVRTFGMSKGVDVRAINIQYEGYKGTHFRVKTPEDGFDVALKLPGSPGVYNALAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I   L        + L    P+ GRG+  R +       ++D+SYNANP ++ AAI  
Sbjct: 293 IAIAGALGLSPAAIARGLEKVSPERGRGRALRASSGAQ---IVDDSYNANPVAVAAAIDT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+       GRR  +LG M E+G  +  FH ++        +  +   G       +   
Sbjct: 350 LAMTP----GRRSLILGPMLELGPKTDEFHREMGVRAKEAGLDRLITVGEATRPAAEGFG 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            S    +      L   +      GD V+VK S       +++ LL E  A
Sbjct: 406 GSPQ--HFADNSALLSALPDF-TSGDTVLVKGSRGARLEVVVDALLGELEA 453


>gi|114327097|ref|YP_744254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315271|gb|ABI61331.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 459

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 164/464 (35%), Positives = 238/464 (51%), Gaps = 17/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT   LL A  G           +G+SID+R++ P + F A++G + DGHD    A
Sbjct: 1   MSALWTREALLAATGGRF---SMPFDAHGVSIDTRTLEPADLFVALQGDNGDGHDHAEAA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+ + D          P   V+D + AL  L   AR R   T+ A+TGSVGKT
Sbjct: 58  LARGAAGVLAHRDGPG-------PRLLVNDTMSALQALGRFARDRFHGTVFAVTGSVGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML  AL+     +A   SYNNH GVPLTLAR+P      + E+GM+H GEI  L  
Sbjct: 111 TTKEMLRTALAPFGPVHAAYASYNNHWGVPLTLARLPESARSCVVEIGMNHAGEIAPLAA 170

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+  +H+ +   IE IA  KA +F GL   G   +  D      L A+  
Sbjct: 171 LARPHVAIITTVERSHIGHLGSIEAIADEKAALFSGLAADGVAIMPADSPMLPRLMAQ-- 228

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + +FG   N+  +L++ +  ++ S +++ ++G+S+       G HMA N L  L
Sbjct: 229 -AAPHRVMTFGTDANSMVRLQQIEAATDSSRLDIVVRGQSLSCTIGAPGRHMAMNALAAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     D   A  AL  FH   GRG +   ALN G   L+DESYNA+ AS++AA+ VL
Sbjct: 288 SAVDAAGFDPHPAAAALENFHALAGRGAKRSIALNDGQAVLLDESYNASSASIRAALDVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                     RI VLGD+ E+G+ + + H  LA+ ++       +  G  +  L DALP 
Sbjct: 348 RLTPASR---RIVVLGDILELGDQAVAEHAGLAQDIAACA-DLAFTCGPMMRHLFDALPA 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           S+   +      L   + +++ DGD ++VK S       +   L
Sbjct: 404 SVRGAHEADSASLAPVVSAAIRDGDTILVKGSFGSRMCIVTAAL 447


>gi|331001076|ref|ZP_08324707.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
 gi|329569381|gb|EGG51159.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parasutterella excrementihominis YIT 11859]
          Length = 462

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 122/471 (25%), Positives = 195/471 (41%), Gaps = 29/471 (6%)

Query: 1   MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  L T  +  + +     I   P    + +S DSRS+ P   FFAI+G   DGH+F+ 
Sbjct: 1   MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA   VV          +S+P   V D   AL   A   R +    +IA+ GS G
Sbjct: 60  AASDAGAAAAVVTH-----FVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 119 KTTTKEMLTIALSSIKK---TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTT +M+   +    +        G+ NN +GV L L ++  +     FE+GM+H+GE+
Sbjct: 115 KTTTTQMVLSIIKERFQEGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L   + P I  +T     H    + +EE A    E+F  L + G   +N  D F    
Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      G   + +FG   +  +         E +   +      +++     G H   N
Sbjct: 235 RK---MAGNNRVVTFGTPDSDVYAC-----EVEGTAFRLVTPIGQIDIELKVPGKHNIVN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++  +  D+    K L  F        R           +ID+SYNANP SM  
Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAV---SHRGEVVTLDDGSVVIDDSYNANPDSM-- 341

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             +    +    +  +I V GDM E+G  S  FH +L E +    I + +  G  +L   
Sbjct: 342 --NAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465
           +         + ET + L   ++  +V G   V+ K+SN    ++L + L+
Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|303258240|ref|ZP_07344247.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858993|gb|EFL82077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 462

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 197/471 (41%), Gaps = 29/471 (6%)

Query: 1   MN-PLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MN  L T  +  + +     I   P    + +S DSRS+ P   FFAI+G   DGH+F+ 
Sbjct: 1   MNEALMTIGEFAEMLGSDIQIKGAPGIKFSSVSFDSRSVRPNGLFFAIEGER-DGHEFVQ 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A   GA   VV          +S+P   V D   AL   A   R +    +IA+ GS G
Sbjct: 60  AASDAGAAAAVVTH-----FVPVSLPQVLVKDTREALLDSAKKWRSKFDLPVIAVAGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSY---NNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTTT +M+   +    +  A +G+    NN +GV L L ++  +     FE+GM+H+GE+
Sbjct: 115 KTTTTQMVLSIIKERFQKGAWVGTEGNLNNELGVSLMLWKLRPEHQAACFEVGMNHIGEM 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R L   + P I  +T     H    + +EE A    E+F  L + G   +N  D F    
Sbjct: 175 RPLVSAIAPTIGTVTNTMRDHQEFLASLEETAKENGEVFAQLPRQGVAVINAADPFAVEW 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      G   + +FG   +  +         E +   +      +++     G H   N
Sbjct: 235 RK---MAGNNRVVTFGTPDSDVYAC-----EVEGTAFRLVTPIGQIDIELKVPGKHNIVN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +    ++  +  D+    K L  F        R           +ID+SYNANP SM  
Sbjct: 287 AVNAAAVLFAMGRDLCDIKKGLENFEAV---SHRGEVVTLDDGSVVIDDSYNANPDSM-- 341

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             +    +    +  +I V GDM E+G  S  FH +L E +    I + +  G  +L   
Sbjct: 342 --NAAVNMLSEYQLPKIFVAGDMGELGVQSPQFHRELGEFVRRCGIENFFSIGNRMLDAV 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLL 465
           +         + ET + L   ++  +V G   V+ K+SN    ++L + L+
Sbjct: 400 EGYGEGAR--HFETQEELLAALKEEMVKGPHAVLFKASNFMKLFKLADELV 448


>gi|291458600|ref|ZP_06597990.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419133|gb|EFE92852.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 438

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 128/456 (28%), Positives = 202/456 (44%), Gaps = 38/456 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-L 81
            +  +  I +DSR       F  I G H DGHDFI  AV++GA  V+ + D+        
Sbjct: 10  DERGIEKIYLDSREDGRGGLFVPIIGAHKDGHDFIEMAVERGAAAVLSSRDVTELKKKYP 69

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  + V D   AL ++    + R +  +I +TGS GKTT + ML +ALSS ++ +   G
Sbjct: 70  EVRFWQVPDTRAALQEIGRYEKERFRGKVIGVTGSSGKTTMRSMLALALSSERRVFQTAG 129

Query: 142 SYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           + N+ +GVP+TL ++     +  + ELGMS  GE+  +  + R  +A+IT I  AH+ N 
Sbjct: 130 NANSQLGVPITLFQLARSGAEIAVLELGMSEPGEMTRIASIARVDLALITNIGTAHIENL 189

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E I   K  I +G      ++LN +D     L  +          S GK     F  
Sbjct: 190 KTKENILLEKLHILDGAADGAALYLNGEDPLLASLTEERIH---DLGISLGKRVELHFYR 246

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            + +     +   +Q                        L +   L    +  ++AL  F
Sbjct: 247 AEEEIPLSAAGHHMQQN------------------AAAALAVSLDLGLQREGVLRALRGF 288

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +GRG      L++    ++D+SYNA+P ++KA++ V   +S     R+IA+L DM E
Sbjct: 289 SGLKGRG---EKLLSRSGIGILDDSYNASPDALKASLLV---LSKEKGRRKIALLSDMLE 342

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---------IHVHYSETMD 431
           +GE S+  H D    LS   I  V L G   L +   + R          I V +    +
Sbjct: 343 LGERSEELHEDCGAFLSSLPIDRVLLYGEKSLGILRGIRREEKRRGDGRQIPVSHFSNAE 402

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L+  +      GD+V+ K S+S G  RL+    EE
Sbjct: 403 ELYRELLREAAPGDLVLFKGSHSMGLSRLVERFREE 438


>gi|85373182|ref|YP_457244.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
 gi|84786265|gb|ABC62447.1| UDP-N-acetylmuramyl pentapeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 498

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 180/473 (38%), Positives = 245/473 (51%), Gaps = 26/473 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW+  ++  A  G + G        G+ +DSR + P + F A+KG   DGH F+  A  
Sbjct: 35  ALWSAQEIAAATGGTASG---DFQCAGVEMDSRDVRPGDLFVALKGESMDGHRFVEKAFA 91

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V          +  P   V+D   AL  LA AAR R+ A  I +TGSVGKT  
Sbjct: 92  AGAAAALVERP-------VDWPHVLVEDTGAALEALAHAARERADAKRIGVTGSVGKTGV 144

Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  AL      + +  + SYNNH+GVPL+LARMP    +G+FE+GM+H GEI  LT 
Sbjct: 145 KEAIFAALEKSSRGQAHRSVRSYNNHVGVPLSLARMPARSRYGVFEMGMNHAGEIAGLTD 204

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRPH+AVITTIAPAH+ N   IE IA AKAEIFEGL K GT  +  D   +E L+A + 
Sbjct: 205 HVRPHVAVITTIAPAHIENLGSIEAIADAKAEIFEGLVKGGTAVIPADSEQYEQLRASAE 264

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             G+ TI SFG++ +AD +L       +  S +  Q++   +       G H   N L  
Sbjct: 265 KRGV-TIVSFGRADHADVRLLDAIPAANGGSLVTAQVRDSRLCFTVAEPGEHWVSNALAV 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V     D+  A  AL+     +GRG R+  A+  G   LIDESYNANPASM    + 
Sbjct: 324 LAAVQAAGGDLGAAGLALAELGGLKGRGARHHVAVTGGKALLIDESYNANPASM---RAT 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q+      RRIAVLG M E+G+    FH  LAE +   ++ +  L G  +LAL   L 
Sbjct: 381 LRQLGQTPATRRIAVLGSMKELGDFGPEFHRQLAEPMGEADLDYAVLVGDEMLALARHLG 440

Query: 420 RSIHVH--------YSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
           ++            + +        +Q   L  GD ++VK SNS G  +L++ 
Sbjct: 441 KAGSGTLGKTPAFAHCDGPAEAIAALQEYGLTAGDAILVKGSNSIGLGKLVDH 493


>gi|332876573|ref|ZP_08444333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332685406|gb|EGJ58243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 464

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 184/446 (41%), Gaps = 25/446 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G+  D+R I P   +FA+KG  +DG+ F   A+ KGA L V++         +      V
Sbjct: 28  GVCTDTRKIVPNSIYFALKGASFDGNTFAAEALNKGATLAVIDNPAY----QIDERTLLV 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL AL +LA   R   K  II ITGS GKTTTKE++   LS   +  A  G+ NN IG
Sbjct: 84  PDVLLALQELANYHRRTLKTLIIGITGSNGKTTTKELIKSVLSEAMQVVATEGNLNNAIG 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +  + D  I E+G +H  EI  L+ +  P    IT+I  AHL  F   E +  
Sbjct: 144 VPLTLLSIKPETDIAIVEMGANHPHEIADLSRIAEPDYGYITSIGKAHLEGFGSFEGVIK 203

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQC 266
            KAE+++ L+      +   D   +    + +A       +   +        +    + 
Sbjct: 204 TKAELYDYLKAHQKTIIYNADDTLQQSLVEGYANVYSFGTTDEVNVPVACVAVQPVSIRF 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-----------LGIVSILTADVDTAIK 315
           SE S ++ +                 +   +             +               
Sbjct: 264 SEGSVLQTEEPATKDLPYIDTTIKGFSGATIAVSHLMGSYNFNNIAAAVAFGRYFRLPAA 323

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+     K          +  G  TL+ ++YNANP+SM AAI  +  +    +   + +L
Sbjct: 324 AIKRGIEKYVPHNNRSQLMAWGTNTLLLDAYNANPSSMAAAIHNVLTMPNFTKK--VLIL 381

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G+ + + H  + + L+ +    V+L G H    K   P+       ET +    
Sbjct: 382 GDMFELGDYAAAEHQQIVDSLTPHQWEGVYLVGQHFAQTKSPYPQ------YETFEAFQE 435

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLI 461
             +       ++++K S      RLI
Sbjct: 436 AFKQLTFTDSLILIKGSRGMALERLI 461


>gi|298481692|ref|ZP_06999883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
 gi|298272233|gb|EFI13803.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           sp. D22]
          Length = 431

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 114/436 (26%), Positives = 187/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEG--DQRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K   I   + D+    L   S  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G++ +V    IG +   N L  + I      +     KAL+ + P+  R +
Sbjct: 249 AFEWKAGKDGEAHQVCTQLIGEYNFPNALAAITIGRFFGVETKKIDKALAEYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTENN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +   N   VWL G    A + +            +  +   +Q     G  ++
Sbjct: 362 HQKIVDYIKESNFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEFL 431


>gi|298245711|ref|ZP_06969517.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
 gi|297553192|gb|EFH87057.1| alanine racemase [Ktedonobacter racemifer DSM 44963]
          Length = 870

 Score =  215 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 119/474 (25%), Positives = 209/474 (44%), Gaps = 22/474 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL A QG       Q    G S D+R I P E F A++G   DGHD++  A+++GA  ++
Sbjct: 7   LLAATQGRLQSPEKQTRFQGFSHDTRQILPGEMFVAVRGERGDGHDYLFDAIERGATGLL 66

Query: 70  VNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V T  + S+          I    V+D   AL   A     R + TIIA+ G VGKT+ K
Sbjct: 67  VETRHIESMPEAEQERLKQITTVMVEDTRQALRAYASEILQRWQPTIIAVAGGVGKTSMK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E +   LS    T+    +YN+ +G+PL+L R+    ++ + ELG  H GE+  L  +V+
Sbjct: 127 EAIASVLSRNYATFRSWKNYNDLLGIPLSLGRLEPQHEYAVLELGCDHPGELHKLCQMVK 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI ++T +AP  L  F  +E +A   +E+   L   G  +LN  D+    + A      
Sbjct: 187 PHIGILTNVAPVQLQYFGSLEHLAKELSELLYSLPPEGCFWLNDSDARLVEIVAHYQQQR 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI--GYHMAQNMLMTLG 301
              +         +    + +   E     ++ +G+   +       G      ML    
Sbjct: 247 GSAVPDIRPLGIREINETQIRVGWEGLSFTLEQEGEMGTLTLASRLLGRQHISTMLAAYR 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        +   +AL    P EGR              L+D+++NA+P S+ A +  L 
Sbjct: 307 IGRACGMSAEEVSEALEQLGPIEGRLN---PLPGVYESRLLDDTHNASPGSVLAGLQALD 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +++ +  G+RIA+LG+M  +G     ++  + E  +   + ++ L G     + ++  ++
Sbjct: 364 ELT-NEGGKRIAILGEMLNLGYYQDDWYEQIGEQAA-SKVDYLILRGERTALIAESARQA 421

Query: 422 I----HVHYSETMDGLFLFIQSSL-VDGD----VVVVKSSNSCGFYRLINLLLE 466
                 +    T +      ++ L  +G+    VV++K S +    R+  +L+ 
Sbjct: 422 GLASEQIELVSTHEDAAQLARAYLEREGEAGRNVVLLKGSEATRMERVTEMLMA 475


>gi|33865536|ref|NP_897095.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. WH 8102]
 gi|33632705|emb|CAE07517.1| Cytoplasmic peptidoglycan synthetases, N-terminal:
           UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Synechococcus sp. WH 8102]
          Length = 449

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 129/445 (28%), Positives = 188/445 (42%), Gaps = 21/445 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   V  I  DSR +     F  + G  +DGH F+      G    VV+ D  A + S 
Sbjct: 21  NPDQPVGTICTDSRQLKAGNFFVPLVGERFDGHRFLEQLPALGGQGAVVSLDWTAPLPS- 79

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  + VDD L A  +LA+  R +    ++A+TGS GKTTT+E++   L+ +    A  G
Sbjct: 80  GLLHWRVDDTLAAYQQLALLHRRQLGLPLVAVTGSAGKTTTRELIRAVLAPLGAIQASDG 139

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + NN IGVPLT+     D    + E+GM   GEI  L+    P +AVIT I  AH+    
Sbjct: 140 NNNNDIGVPLTVLGAGSDHAALVIEMGMRGPGEIARLSRCTEPDVAVITNIGTAHIGRLG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E IA+AK EI   L   G + +   D   E   A      +  +              
Sbjct: 200 SREAIATAKCEITAALHPQGVVVIPAGDPLLEQALAAVWQGRVLRVRL--------EDDP 251

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                   +    +L      +     G H A+N+L+ L + S L  D      A +   
Sbjct: 252 DITADLIGAARNDRLLLDEASIPLPLDGRHNARNLLLALAVGSHLGVDP-----ASAAQL 306

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                G R R  L QG  TL+DE+YN    +   A+     +     GRR AVLG M E+
Sbjct: 307 QVNIPGGRNR-RLQQGGLTLLDETYN----ASPEAVLAALDLLADQPGRRFAVLGTMLEL 361

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           G+ S   H  +A   +   +  V L   G    A+ + +     +    T +   + +  
Sbjct: 362 GDRSIELHQQVAARAAALKLDGVVLVDGGDEGQAMANVVSCLDRLALVATPEAAAVPLGQ 421

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            L  GDVV++K+S      RLI LL
Sbjct: 422 WLQAGDVVLLKASRGVALERLIPLL 446


>gi|111018105|ref|YP_701077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
 gi|110817635|gb|ABG92919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus jostii RHA1]
          Length = 504

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/501 (24%), Positives = 196/501 (39%), Gaps = 52/501 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G       P   V G +  DSR +     F A+ G H DGHD   
Sbjct: 1   MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGAHVDGHDHAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-----LGALN----------------- 96
            AV+ G   V+           + +P   V          A+                  
Sbjct: 60  SAVEAGVVAVLAARP-------VGVPAIVVTPTPSDVPSKAMALEHDTDGSGAAVLAALA 112

Query: 97  ---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              + +V        T++ +TGS GKT+TK++L   L  +    A  GS+NN +G P T 
Sbjct: 113 KLARASVDGLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R   D  F + E+     G I  L ++  P I V+  +  AHL  F   + IA+AK E+
Sbjct: 173 LRADADTGFLVLEMSARGRGHIASLANIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGEL 232

Query: 214 FEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E L          LN DD     +  ++ A  +    S      A   +   K    ++
Sbjct: 233 AESLPSADEGGVAILNADDPLVAAMAPRTSARVVLVGRSESAHVRATDIVLDEKA---RA 289

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S+ V     G H   N L    +     AD++   +ALS       R    
Sbjct: 290 RFTLTAPTGSVAVELAVHGEHQVGNALAAAAVALECGADLEQIAQALSGAAAVSARRMDV 349

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---RRIAVLGDMCEMGELSQS 387
           R   +    T++++SYNANP SM+AA+  L  ++  G G   R  AVLG+M E+G  S  
Sbjct: 350 RDRPDGV--TVVNDSYNANPDSMRAALKALVSMARSGRGAARRSWAVLGEMAELGPESVV 407

Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
            H  +       ++S + + G      A+                   + G    +++ L
Sbjct: 408 EHDAIGRFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEAEL 467

Query: 442 VDGDVVVVKSSNSCGFYRLIN 462
             GD+V+VK+S S G + + +
Sbjct: 468 APGDLVLVKASQSIGLWEVAD 488


>gi|255994324|ref|ZP_05427459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
 gi|255993037|gb|EEU03126.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Eubacterium saphenum ATCC 49989]
          Length = 481

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/482 (25%), Positives = 197/482 (40%), Gaps = 27/482 (5%)

Query: 5   WTFHDLLQAIQGHSIGIV--------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
               +  + I G+               G +  +  DSR +     F  +KG  +DGHD+
Sbjct: 1   MNLEEFCEIIDGNVCYKSVDFKMPCEQDGKMFNVVTDSRDVKKGCIFVCLKGEFHDGHDY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKAT 109
           +  A + GAG+++VN D  A +          +  V  V   L A+ +LA          
Sbjct: 61  VRQAAEDGAGIIIVNEDKKADVMKAIDDARAMNTSVISVKAPLYAMGELAKWYISYLGVK 120

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I ITGSVGKTT K+M+   L S   TY   G++N+ IG+PLT   MP D    +FELGM
Sbjct: 121 TIGITGSVGKTTVKDMVASVLPSAMNTYKTKGNFNSLIGLPLTALSMPRDTSLCVFELGM 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              GEI  L+ ++ P +A+IT I  +H+      E I  AK+EI   ++  GT+ L  D+
Sbjct: 181 DAKGEIDRLSEIIAPDVAIITKIGVSHVERLGSRENIFRAKSEIVNHIKPGGTLILGVDE 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               L K            +       D      +   +                     
Sbjct: 241 DEQYLKKENFTGNFNVIEVTAKHYAGVDSNTYCVENVRDDMEGIRFEFSGGGYEKIPVTI 300

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                +  +  G+        D  ++++           +      +G  T ID+SYNA+
Sbjct: 301 NTHGIHNALNAGLAIACGLQFDIDLESIKEGLKNVNFTAKRLEIKEKGGITFIDDSYNAS 360

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM +A+ VLSQIS   +GR +AVLGDM E+G+ S+ FH  +  ++    I  +   G 
Sbjct: 361 PESMSSALRVLSQIS---KGRMVAVLGDMNELGKDSEDFHKRIGRLVFDLGIEELIAVGE 417

Query: 410 HVLALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                 +    +  +          + E            + +GD V++K+SN+     +
Sbjct: 418 KGRGYIEGFSEAAEIEGKKNDVQIVWIEDSKKCRDACFKHISEGDWVLLKASNALKLSSI 477

Query: 461 IN 462
           + 
Sbjct: 478 LE 479


>gi|257056721|ref|YP_003134553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586593|gb|ACU97726.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 487

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 121/497 (24%), Positives = 186/497 (37%), Gaps = 44/497 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56
           M  L T  ++ +A+ G          V G +  DSR +     F A+ G   DGHDF   
Sbjct: 1   MIEL-TLAEIAEAVSGRLHRADGGERVTGSVEFDSRKVTDGGLFVALPGERADGHDFAAS 59

Query: 57  --------------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--------VLGA 94
                         +       A  V+V           S+ + G  D         L A
Sbjct: 60  AVAAGAAGVLAAREVD------APAVIVPPLPPGQAHERSVALAGDTDGSGAAVLAALAA 113

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +  V     +  T++ +TGS GKT+TK+++   L  +  T A  GS+NN +G P T  
Sbjct: 114 LARHVVTRLSETGLTVVGVTGSSGKTSTKDLIAQLLEPLGPTVAPPGSFNNELGHPWTAL 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R        + EL     G I  L  +  P I V+  +  AH+  F   E IA  K E+ 
Sbjct: 174 RADRKTRHLVLELSARGPGHIAELAAVAPPRIGVVLNVGSAHVGEFGSQEGIARTKGELV 233

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L   G   LN DD F   +  ++ A  +      G+S  AD +    +   E +    
Sbjct: 234 EALPAEGVAVLNVDDPFVAEMAQRTSARVVG----VGESPKADVRAENVRL-DEHARASF 288

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L                             L   +  +  A  +        +R     
Sbjct: 289 DLVAGGERAEVRLQLVGEHHVGNALAAAAVALELGMPLSEVAAGLSAATRRSERRMEVTT 348

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T++++SYNANP SM+AA+  L+ ++        AVLG M E+G  S S H ++  
Sbjct: 349 RSDGVTVLNDSYNANPESMRAALKTLASMTSSRRSW--AVLGVMSELGADSVSAHDEIGR 406

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +    NI+ + + G    A+                    D     ++  L   DVV+VK
Sbjct: 407 LAVRLNINRLVVVGEQAAAMHRGASHEGSWGEESVLVPDTDAAVALLREQLRPNDVVLVK 466

Query: 451 SSNSCGFYRLINLLLEE 467
           +S     +R+ + LLEE
Sbjct: 467 ASKVAELWRVADALLEE 483


>gi|293370650|ref|ZP_06617202.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
 gi|292634384|gb|EFF52921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CMC 3f]
          Length = 431

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 186/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDK--RYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K   I   + D+    L   +  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--AYLMNIAQGLNLISYGTEDDLYVNGQITDN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G+  +V    IG +   N L  + I      +     +AL+ + P+  R +
Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGAESPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +       VWL G    A + +               +   +Q++   G  ++
Sbjct: 362 HQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQANKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEYL 431


>gi|257068260|ref|YP_003154515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
 gi|256559078|gb|ACU84925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brachybacterium faecium DSM 4810]
          Length = 495

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 124/486 (25%), Positives = 209/486 (43%), Gaps = 23/486 (4%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++     G  +G       V G + IDSR + P + F A  G H DGHDF+  A   
Sbjct: 5   TAREIAAVTGGELVGGATGDELVTGTARIDSREVGPGDLFAAFLGEHVDGHDFLDAARTA 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAARLRSKATIIAITGSVG 118
           GA L +V     A+    S+P   VDDV       A  +LA A +   +  ++A+TGS G
Sbjct: 65  GAALSLVTD--AAAAAEHSLPAVRVDDVRDALAALARAQLARARQENPQLVVLAVTGSAG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TK++L   L S   T A +GS+NN +G+PLT+ ++  +  F + E+G   +G I  L
Sbjct: 123 KTGTKDLLGTILRSAGPTVAPVGSFNNELGLPLTVLQVTGETRFLVLEMGARGIGHIAEL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP ++++  +  AHL  F  ++ IA AK E+ + L   G   LN +D     +  +
Sbjct: 183 TEIARPDVSLVLNVGSAHLGEFGSVDAIARAKGELVDALAPGGRAILNAEDRLVAAMAER 242

Query: 239 SHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           S A  +   ++ G     +    +     +          +     +             
Sbjct: 243 SAAPVVTWGFTTGDVRGAELTLDEQARVAFTLEVPAGLTTLHGDAVAPGSFPVRPDLLGE 302

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 L  ++        +  A +          +    L  G   +ID++YNANP S+
Sbjct: 303 HQAANVLAALTAALMAGVDSASATAALDGATLASGQRMQVLRAGGALIIDDAYNANPDSL 362

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A+  L+ +      R IAVLG+M E+G  +   H ++  +    NI  +++ G     
Sbjct: 363 RQALKTLAHLGRRH--RTIAVLGEMLELGPDTVRLHDEIGRLAVRLNIGQLYVVGEGAAP 420

Query: 414 LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE--- 466
           +               Y +T++     ++  +  GD V++KSS   G  R+   L+E   
Sbjct: 421 IHHGASLEGSFGGESEYLDTVEEAIAVLERIVQPGDAVLLKSSRDAGLRRIAAPLVEHLA 480

Query: 467 EFPAIQ 472
           + PA +
Sbjct: 481 QRPAAE 486


>gi|308233781|ref|ZP_07664518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 482

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/477 (25%), Positives = 203/477 (42%), Gaps = 25/477 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  GA
Sbjct: 5   TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 64

Query: 66  GLVV----VNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
             VV     + +++      +  +     DD    L +LA   R ++   T++ +TGS G
Sbjct: 65  SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  +
Sbjct: 125 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIAS------AKAEIFEGLEKTGTIFLNYDDSFF 232
             + +P IAVIT I  +HL      + IA       A     +  +    + L+  D F 
Sbjct: 185 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290
             +           +   G+  ++   + K                 G   +V     G 
Sbjct: 245 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 304

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +    L +  IL    D A  AL           R           +ID+SYNA P
Sbjct: 305 ACVIDACFALRVCEILGVSYDKACCALLHMKQV---HMRMEEIKKPHLPLIIDDSYNAAP 361

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-F 409
           AS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G  
Sbjct: 362 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 419

Query: 410 HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           H   + +A       S  + Y   +D     ++  L   DV++VK+S S    + + 
Sbjct: 420 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 476


>gi|237715366|ref|ZP_04545847.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405210|ref|ZP_06081760.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645647|ref|ZP_06723336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294806411|ref|ZP_06765254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444675|gb|EEO50466.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356085|gb|EEZ05175.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638992|gb|EFF57321.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides ovatus SD CC 2a]
 gi|294446426|gb|EFG15050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 431

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 112/436 (25%), Positives = 186/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAVEG--DQRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K       + D+    L   S  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDATTFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G++ +V    IG +   N L  + I      +     KAL+ + P+  R +
Sbjct: 249 AFEWKAGKDGEAHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDKALAEYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGADSPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +   +   VWL G    A + +            +  +   +Q     G  ++
Sbjct: 362 HQKIVDYIKESDFEKVWLVGEQFAASEHSFKT------YANVQEVIKDLQEDKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEFL 431


>gi|312887539|ref|ZP_07747133.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
 gi|311299909|gb|EFQ76984.1| alanine racemase [Mucilaginibacter paludis DSM 18603]
          Length = 822

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 127/465 (27%), Positives = 203/465 (43%), Gaps = 17/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQ 62
           ++   + Q I   +  I     VN +  DSR I       FFA+ G   DGH+FI    Q
Sbjct: 6   YSITQIQQIIGASAT-ITHDSMVNNLLTDSRKINNPFTSLFFALSG-RRDGHEFIGDVYQ 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV    V            VDDVL AL KLA+  R +    +I ITGS GKT  
Sbjct: 64  AGVRNFVVFKLPVKVDLLRDANFLVVDDVLKALQKLAIHHREKFDIDVIGITGSNGKTIV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L + KK      SYN+ IGVPL++ +M    + GIFE G+S  GE+  L  ++
Sbjct: 124 KEWLYQLLCADKKIIRNPKSYNSQIGVPLSVWQMDDQHNLGIFEAGISTTGEMERLERMI 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I ++T +  AH   F       S   +  E   K  T        +  LLK K+   
Sbjct: 184 KPTIGILTHMGSAHDEGF-------SGPEKKLEEKLKLFTHCSMVIYQYDALLKYKARVP 236

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G        K +  D  +      S + ++    +GK +E +   I     +N ++    
Sbjct: 237 GKTKFTWSRKFREVDLYVFNETIISNKYYLRGVFKGKEIECLVPFIDEASIENAIVCWAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D   A   L    P   R +  +   N    ++ID+SYN++  S++ A++ L+Q
Sbjct: 297 MLALGYDSQVADDRLERLVPVSMRMELKQGINN---CSIIDDSYNSDFQSLEIALNFLNQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            + H       +L D+ + G      +  +A++LS  NI  V   G  + A +      +
Sbjct: 354 QNQHQTR--TLILSDIFQSGLEQAVLYQQVADLLSQKNIDKVIGVGKAISAQQQLFNIPL 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              Y++T D L + +    ++ + +++K S S  F R+   L+++
Sbjct: 412 KYFYADT-DSLLMALADLTLEDETILIKGSRSFEFERISRALVQK 455


>gi|328943770|ref|ZP_08241235.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
 gi|327491739|gb|EGF23513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae DSM 15829]
          Length = 491

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 123/477 (25%), Positives = 203/477 (42%), Gaps = 25/477 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +++QA + +         ++G +IDSR++  Q  F A +G   DG+ +   A+  GA
Sbjct: 14  TTEEIVQATRAYVCNHADITSISGTTIDSRNVVSQGMFVAFRGERTDGNLYADSAIGAGA 73

Query: 66  GLVV----VNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
             VV     + +++      +  +     DD    L +LA   R ++   T++ +TGS G
Sbjct: 74  SCVVLTCEASQELIQLAHEHNCLLLRAAHDDAQEFLLELASFWREKNPLWTVVGVTGSCG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   LS+  +TY    ++NN IG+PLT+   P D +  + E+GM+H GEI  +
Sbjct: 134 KTTTKDMLIATLSTTFRTYGTKANHNNLIGLPLTILNTPSDAEVIVAEMGMNHEGEISRM 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIAS------AKAEIFEGLEKTGTIFLNYDDSFF 232
             + +P IAVIT I  +HL      + IA       A     +  +    + L+  D F 
Sbjct: 194 ALVAKPTIAVITNIGTSHLGLLGSRKAIAQAKAEIIAPMCSQQSRQLKPELILHDSDDFT 253

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGY 290
             +           +   G+  ++   + K                 G   +V     G 
Sbjct: 254 TFITEAYAQPADVLVSCVGEKSSSSIHVTKIDLNELGKACAHVVCSDGLMRKVTLSEAGK 313

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +    L +  IL    D A  AL           R           +ID+SYNA P
Sbjct: 314 ACVIDACFALRVCEILGVSYDKACCALLHMKQV---HMRMEEIKKPHLPLIIDDSYNAAP 370

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-F 409
           AS+  A+ VL Q +    GRRIA+LG++ E+G  +   H  +   ++  N+  V   G  
Sbjct: 371 ASIAQALQVLQQCT--CTGRRIAMLGEVGELGAHAHRLHGYIGAYVAACNLDMVVFVGSD 428

Query: 410 HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           H   + +A       S  + Y   +D     ++  L   DV++VK+S S    + + 
Sbjct: 429 HAQEMMEAASTMGYPSDRMMYVHDVDEALKQVKPLLTSDDVILVKASRSAQLDKFVK 485


>gi|289450690|ref|YP_003474676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185237|gb|ADC91662.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 553

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 136/554 (24%), Positives = 219/554 (39%), Gaps = 92/554 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSI--------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M+P+    +L++A  G                  + G S DSR+I   EAFFA+KG ++D
Sbjct: 1   MDPI-RLKELIRATSGQLFFSADSAMRKEAMNYVLLGTSTDSRTIKRCEAFFALKGENFD 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH F+  AV+ GA  +VV+    A +    +P   V+D L AL KLA   R     T++A
Sbjct: 60  GHAFVERAVRAGAVALVVSDLKCAELWQAELPTILVEDTLTALQKLAAYYRQNYLHTLVA 119

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKT+T+EM+  AL           + NN IGVP T+ ++    D  + E+GM H 
Sbjct: 120 ITGSVGKTSTREMIAAALRPTLAVSCTGENLNNEIGVPQTVLKVRSACDVAVVEMGMDHA 179

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G++  L+ L +P IAVIT I   H+        I  AKAEI  GL+  G + LN DD F 
Sbjct: 180 GDLTKLSRLAQPDIAVITNIGYCHIEQLGSQMAIMRAKAEIINGLKADGVLLLNADDPFL 239

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLR----------------------KWKQCSEQS 270
             L A+      +   +                                          +
Sbjct: 240 RQLAAEQKGKIKQAFVALNTCPPDLPGDCLVATDVKIEVDGCASFIIKLQQAPDLEKYGT 299

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                   +   +     G H   N L  L    +L   +  A   L  F          
Sbjct: 300 MEAFVDSNRLPRIKLPVPGEHHVINALFGLATAHLLHQPLTLAANGLRDFS----VIGNR 355

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  +N     LI+++YNA P S++A +  L  ++   + R IAVLG + E+G ++   H 
Sbjct: 356 QRIMNADGVVLINDTYNAAPESIRAGVKTLCFLAHSEKRRAIAVLGGIAELGNMADRLHY 415

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-------------------------- 424
           +L   L+  +++ +WL G +V A+   +                                
Sbjct: 416 ELGRYLATADLAEIWLCGPYVAAVAQGIADGDQAGDQADSQAGGKGDRSPGASGTEPAVD 475

Query: 425 ------------HYSETMDGLFLFIQ-------------------SSLVDGDVVVVKSSN 453
                       + SE+       I+                    ++ D D++++K S+
Sbjct: 476 LASESVALTATNYTSESRARAEATIKPPVKVHVFADRDSLTAELLPTIQDRDIILIKGSH 535

Query: 454 SCGFYRLINLLLEE 467
           S    ++ + ++ +
Sbjct: 536 SFAMEKVCDAIISK 549


>gi|295086462|emb|CBK67985.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 431

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 185/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEIQYAIEG--DQRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           DD L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DDCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K   I   + D+    L   S  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--PYLMNISQGLNLISYGTEDDLYVNGRITGN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G+  +V    IG +   N L  + I      +     +AL+ + P+  R +
Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALAEYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFQNMTVP---HKMLILGDMRELGADSPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +   +   VWL G      + +            +  +   +Q     G  ++
Sbjct: 362 HQKIVDYIKESDFEKVWLVGEQFATSEHSFKT------YADVQEVIKDLQEDKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEFL 431


>gi|315937120|gb|ADU56127.1| hypothetical protein CA915-6 [uncultured organism CA915]
          Length = 447

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 130/467 (27%), Positives = 196/467 (41%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + +  ++  A+ G  +       V   + +D R   P   F A  G H DGHDF   
Sbjct: 1   MIAM-SVGEIAAAVGG-LVAGDRAVTVTAAAVLDGREARPGGLFVAFDGEHVDGHDFAGQ 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSV 117
           A Q GA  V+ +   V       +P   VDD           V ARLR+  T+IA+TGS 
Sbjct: 59  AGQAGAVAVLGSRPTV-------LPTVVVDDVQAALQALAAHVLARLRAGLTVIAVTGSQ 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+ L   L+S+  T A + + NN +GVPLT+ R   +  F + E+G  H G+I  
Sbjct: 112 GKTSTKDQLGAVLASVAPTIATVANRNNELGVPLTVLRAGPETRFLVLEMGARHTGDIAM 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT+L    +AV+  +  AHL  F   E I  AK E+  GL   GT  LN DD    L+++
Sbjct: 172 LTNLYPLDVAVVLNVGTAHLGEFGSREAIGRAKGELVRGLVPGGTAVLNADDPRVALMRS 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               L    + +FG + +AD ++R                  +   V             
Sbjct: 232 ----LSDGPVLTFGYADHADVRVRDLTLDRFGRPSFTLCTADASVGVTLPFVGGHQAGNA 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                 ++          A+             R   +    TL+++SYNA+P S +AA+
Sbjct: 288 SAATAAALAAGVSLDVAAAVLGTASLSKWRMELRHLTSGV--TLLNDSYNASPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +      RRIAVLG+M E+G+ S++ H  + E  +      V   G  V  L D 
Sbjct: 346 DA---LLAVEGARRIAVLGEMRELGQASEAEHRAVGEYAAAR-ADMVIAIGETVRPLADG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        D    ++  +L  GDVV+VK+S       +   +
Sbjct: 402 A--GDRAVVLADNDAAVKWLHGNLAAGDVVLVKASRGARLDEVAAAI 446


>gi|160885477|ref|ZP_02066480.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|260172201|ref|ZP_05758613.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           sp. D2]
 gi|315920509|ref|ZP_07916749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109099|gb|EDO10844.1| hypothetical protein BACOVA_03477 [Bacteroides ovatus ATCC 8483]
 gi|313694384|gb|EFS31219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 431

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 185/436 (42%), Gaps = 19/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKLALDSGCAFAIIDEAEYAVEGDK--RYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  + +LA   R +    +I ITG+ GKTTTKE+++  L         +G+ NNHIG
Sbjct: 73  DNCLQTMQQLANYHRRQLGTRVIGITGTNGKTTTKELISSVLCQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K   I   + D+    L   +  L + +  +                   
Sbjct: 193 TKGELYDFLRKKDAITFIHHDN--AYLMNIAQGLNLISYGTEDDLYVNGQITDN--SPYL 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +    G+  +V    IG +   N L  + I      +     +AL+ + P+  R +
Sbjct: 249 AFEWKAGKDGERHQVRTQLIGEYNFPNALAAITIGRFFGVEAKKIDEALASYTPQNNRSQ 308

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S + 
Sbjct: 309 LKKTEDN----TLIIDAYNANPTSMMAALQNFRNMTVP---HKMLILGDMRELGAESPAE 361

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + +       VWL G    A + +               +   +Q+    G  ++
Sbjct: 362 HQKIVDYIKESGFEKVWLVGELFAASEHSFKT------YANAQEVIKDLQADKPKGYTIL 415

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 416 IKGSNGIKLSSTVEYL 431


>gi|27808668|sp|O33804|MURF_STRTO RecName: Full=Probable
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|21911433|gb|AAC23581.2| MurX [Streptomyces toyocaensis]
          Length = 446

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 193/467 (41%), Gaps = 25/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL    ++ + + G + G      V     +DSR   P   F A  G H DGHD+   
Sbjct: 1   MIPLG-LGEIAEIVGGKATG--ESVTVTAPAVLDSRQAEPGGLFVAFAGEHADGHDYAER 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A + GA  V+ +          S+P   V+DV  AL  LA     RLR   T++ +TGS 
Sbjct: 58  AGRAGAVAVLGSRP-------TSLPTVVVEDVRTALQTLAAHVVARLRDGLTVVGVTGSQ 110

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT TK++L   LS    T A  GS NN +GVPLT+ R      F + E+G  H G+I  
Sbjct: 111 GKTGTKDLLAAVLSGAGPTVATTGSLNNELGVPLTMLRAQAATRFLVLEMGARHEGDIAE 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LV P IAV+  +  AHL  F     IA AK E+ +GL   GT  LN DD     +  
Sbjct: 171 LTGLVAPDIAVVLNVGVAHLGEFGSRAAIARAKGELVQGLVPGGTAVLNADDPRVASMS- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               L    + +FG++  AD Q+                   +   +   +         
Sbjct: 230 ---VLTDGPVLTFGRTDPADVQVLDVVLDRLGRPSCTLRTVDTSARLALPLVGAHQALNA 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                 ++          A +          R          TL+++SYNANP S +AA+
Sbjct: 287 SAAAAAALAAGVPLDL--ATTALTTASLSPWRMELRDLACGATLLNDSYNANPDSTRAAL 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                +S    GRRIAVLG+M E+G+ S++ H  +    +      V   G     L D 
Sbjct: 345 DA---LSAIEGGRRIAVLGEMLELGDGSEAEHRAVGAYAAARADVVV-AVGEAARPLADG 400

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                        D    +++  L  GDVV+VK+S       +   L
Sbjct: 401 A--GERAVVLAGNDAAVDWLRDHLAAGDVVLVKASRGARLDEVAAGL 445


>gi|123965910|ref|YP_001010991.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200276|gb|ABM71884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9515]
          Length = 456

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 104/441 (23%), Positives = 184/441 (41%), Gaps = 14/441 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
               IS+DSR+I   + F AIKG ++DGHDF+   ++KG   VV+  D +  +     P 
Sbjct: 27  TFKNISLDSRNILNNDLFIAIKGKNFDGHDFLKEVLKKGVKAVVI-RDGMQHLLPEKFPY 85

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           + V + L +  KLA+  R      ++ ITGSVGKTTTKEM+   L  + K      +YNN
Sbjct: 86  WLVPNTLESFQKLALHKRRTLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLTQLNYNN 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IGV  T+          I E+GM  LG+I  L+    P IAVIT I  +H+      E 
Sbjct: 146 EIGVGRTILDSDFKDKILIIEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKEN 205

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I  AK EI + L+ +G + +  +D F E    K+ +  I  +     ++  D        
Sbjct: 206 ITYAKCEITKYLKPSGVVIIPANDLFLEETLKKNWSGRIIKVDLLDINQKVD-------S 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++++ +    +  +  ++   +     +        + +     +  I+          
Sbjct: 259 INKKNLIGFFNRSNNSIIIEDKLFEISLKGFHNAFNFLFVYAVAKEFGIEFKDTNKFNFL 318

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   +      + DE+YNA+P S+            +       + G + E+G  S
Sbjct: 319 TLDGRNKIIKSKKTVIYDETYNASPESL----KACIINLLNNPNNHFLIFGSIQELGSKS 374

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + +H +L + +   +I            +   D L +S    +   ++ + + I      
Sbjct: 375 KKYHKELFDFIVKSDIKKCIFICDRNDEIYYADYLKKSTKFIFFNDVNKVGITINKYTKK 434

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
           GD ++VK S +     ++  +
Sbjct: 435 GDFILVKGSRNWQLESILKSI 455


>gi|315937025|gb|ADU56034.1| hypothetical protein CA37-11 [uncultured organism CA37]
          Length = 447

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 198/466 (42%), Gaps = 22/466 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G           +D R   P   F A  G H DGHD+   A
Sbjct: 1   MIPL-SLDEIAAVVSGTVEGDGAVTVTAPAVLDGRQAEPGGLFVAFAGEHVDGHDYAGQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            + GA  V+ +          ++P   V+D   AL  LA     RLR + T++ +TGS G
Sbjct: 60  GRAGAVAVLGSRP-------TTLPTVVVEDARAALQALAAHVVARLRDRLTVVGLTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   LS    T A IGS NN +GVPLT+ R   D  F + E+G   +G I  L
Sbjct: 113 KTSTKDLLAAVLSHTGSTVATIGSLNNELGVPLTMLRTTPDTRFLVLEMGARGIGHIAEL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV   +AV+  +  AH+  F   E IA+AKAE+ +GL   GT  LN DD    +++A 
Sbjct: 173 TALVALDVAVVLNVGQAHIGEFGSREAIATAKAELLQGLVPGGTAILNADDPRVLVMRAL 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    +    +FG++++A  ++                   +   V   +          
Sbjct: 233 TDGPAL----TFGRAEHAHVRVLDLALDRLGRPAFTLRTADASAPVALPLVGAHQALNAS 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +          A              R        +L+++SYNANP S +AA+ 
Sbjct: 289 AAAAAGLAAGIPLDVTAATLATASLSKWRMELRGLSGGV--SLLNDSYNANPDSTRAALD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++    GRRIAVLG+M E+G+ S++ H  + E  +      V   G     + +  
Sbjct: 347 A---LAAIEAGRRIAVLGEMRELGDDSEAEHRAIGEYAARA-ADLVVAVGEAAAPIAEGA 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                       D    +++ +L  GDVV+VK+S       +   L
Sbjct: 403 --GDRAVALADNDAAVDWLRRALTAGDVVLVKASRLARLDEVAAAL 446


>gi|78778995|ref|YP_397107.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712494|gb|ABB49671.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 457

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 120/465 (25%), Positives = 194/465 (41%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           ++  +L   +    +             ISIDSR+I   + F AIKG  +DGH F+   +
Sbjct: 3   FSLSELKNVLGDIKNLKEGGEDFLNFKNISIDSRTILKDDLFIAIKGKDFDGHSFLSEVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KG   VV+    +     +  P + V+D L A  KLA+  R +    I+AITGSVGKTT
Sbjct: 63  KKGVKSVVI-KKGMQKSLPIDFPCWVVNDTLEAFQKLALLKRKKLNIPIVAITGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   L  + +      ++NN IGV LT+    V+    + E+GM  LG+I  L+  
Sbjct: 122 TKEMMGEVLKKLGRIKLSYSNFNNEIGVGLTILDTDVEDKVLVLEMGMRGLGQIENLSKY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT I  AH+      + I  AK EI + L   G + +  +DS  E    +   
Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKFLNPKGVVIIPANDSLLEETLKEFWK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +         +   +        +     +  +         G+H A N L   G
Sbjct: 242 GRVIKVELLNIENQNERFKKDDNLRGFYNPSNKTISIQENTFEISFGGFHNASNFLFAYG 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L       I   S               L     T+ DESYNA+P S+KA I  L 
Sbjct: 302 VAKELG------IDFSSFNKFNFASLGGRNKILKSVKTTIYDESYNASPESVKACIKTL- 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLAL-KDALP 419
                    +  + G M E+GE S+ +H ++  +++  +I   +++       +  + L 
Sbjct: 355 ---LEKPRNQFFIFGSMQELGEESEKYHKEIFNLINNSDIEKCLFICDKKNERIYANYLK 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +        +  +   I  S   GD +++K S      ++I L+
Sbjct: 412 DNKKFLVLNNIKDVPKEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|313159807|gb|EFR59163.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alistipes sp. HGB5]
          Length = 414

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 125/436 (28%), Positives = 185/436 (42%), Gaps = 36/436 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R I P   FFA+ G  +DG+ F   A+ KGA  VVV+     S          V 
Sbjct: 14  ISTDTRRIEPGSVFFALHGATFDGNRFAADALSKGAAYVVVDDPAAVSGDRT----VLVG 69

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R      I+AI+GS GKTTTKE+++  L+   + YA  G+ NNHIGV
Sbjct: 70  DTLEALQELAREYRRELAIPILAISGSNGKTTTKELVSRVLAERFEVYATHGNLNNHIGV 129

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  M  D +FG+ E+G S  GEI  L  +  P+  ++T I  AHL  F G E I   
Sbjct: 130 PLTLLAMTRDTEFGVVEMGASACGEIALLASIAEPNYGILTNIGRAHLEGFGGPEGIRR- 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                                  + L A      +            D  L       + 
Sbjct: 189 -----------------GKGELLDYLAANGGRAFVPR---------EDQTLTNMAAERDG 222

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E      +  + HH  G +   N+   + +      D +    A+  + P   R +R
Sbjct: 223 LAAEYYSVTLADGIAHHLEGDYNRFNIAAAVAVGRYFDIDGERIRHAVGSYMPDNNRSQR 282

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N    TLI + YNANP+SM+A++         G  RR+ +LGDM E+G  S+  H
Sbjct: 283 TETERN----TLIVDCYNANPSSMRASVLNFLAEPAGGRSRRVLILGDMLELGAWSEQEH 338

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            D+  + +    + + L G         + P+  +     + + L   ++   V+   V+
Sbjct: 339 RDIVALAARNPDAELMLVGGEFARACAGMEPQPANTALFPSREELIAELRRRPVENAFVL 398

Query: 449 VKSSNSCGFYRLINLL 464
           VK S   G  + +  L
Sbjct: 399 VKGSRGIGLGKALEEL 414


>gi|53804641|ref|YP_113756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
 gi|53758402|gb|AAU92693.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylococcus capsulatus str. Bath]
          Length = 449

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 115/463 (24%), Positives = 181/463 (39%), Gaps = 21/463 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + + G  +    +   +G+S D+R+I P   FFA++G  +D HDFI       
Sbjct: 1   MNLGELAKHVPGAKLSGDAETSFDGVSTDTRAIRPGSLFFALRGDRFDAHDFIAD----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +V       +P   V D   AL   A A R +    +IA+ GS GKTT  +
Sbjct: 56  AVGGGAAALVVERRIDTPLPQIIVPDGRRALGAAAAAWRAQFDVPLIAVAGSNGKTTVTQ 115

Query: 125 MLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           M+   L++           G+ NN +G+PL L  +       + ELGM+H GEI +L +L
Sbjct: 116 MIAAILAAAFGEERRLATRGNLNNDVGLPLMLFELKAGHRIAVLELGMNHPGEIAYLANL 175

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A++T     H    + +E  A     +   L   GT     DD    + +  +  
Sbjct: 176 ARPTVALVTNAQREHQEFMASVEATAHENGSVIAALPTDGTAVFPADDPCAGIWRKLAGT 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +      G +  +       +  +  + + +       +      G H   N L    
Sbjct: 236 RRVIDFARRGTATVSGTF----RTSAGFAEVSITTPAGCWQANLPLAGEHNVHNALAATA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                    +   + L  F P  GRG + R         LID++YNANP S++AAI VL+
Sbjct: 292 AALAAGVPPEAIRRGLESFRPVAGRGVQLRTRTG---ARLIDDTYNANPDSVRAAIDVLA 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                    RI  LGDM E+G     FH ++       +I  +   G             
Sbjct: 349 GFPQ----PRILALGDMGEVGVHGPEFHREIGRYARERDIDTLLALGELSSETVRTF--G 402

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H+  TMD L   + S+      ++VK S      R +  L
Sbjct: 403 TSGHHFGTMDELIAALASADRPEATLLVKGSRFMQMERAVKAL 445


>gi|294674906|ref|YP_003575522.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
 gi|294471729|gb|ADE81118.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella ruminicola 23]
          Length = 478

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 184/446 (41%), Gaps = 29/446 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR       F A+KG  ++G+ F L A++KG    +V+ D+          +  VD
Sbjct: 51  ITTDSRDCPEGSIFLALKGESFNGNKFALQALEKGCAYAIVDEDVANDP-----RIIKVD 105

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L     LA   R +    +I ITG+ GKTTTKE++   LS         G++NN +GV
Sbjct: 106 NCLQTFKDLAREHRRQFDIPVIGITGTNGKTTTKELIAAVLSQKYNVLYTQGNFNNDVGV 165

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L     P   +IT +  AHL  F   E +   
Sbjct: 166 PKTLFRLNKEHEIAVIEMGASHPGDIKTLAETAEPTCGLITNVGRAHLQGFGSFEGVIKT 225

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L       +  +     L+   S    +          N    +         
Sbjct: 226 KCELYDFLRSREDSLIFINADNEHLIDQISDDEEMWLSPYSTDPDNQYSCISGEVLECNP 285

Query: 270 SWMEVQLQG-----------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                  +            K  +V    IG +   N+L  + +      D    + AL 
Sbjct: 286 FLKFRWREPLMVLEEEGRSTKWHKVQTKLIGSYNIDNLLAAIAVGINFGVDRKKIVAALE 345

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +      N     LI ++YNANP+SM+AA+     +    +   +A+LG M
Sbjct: 346 AYEPSNNRSQMTVTEKNH----LIVDAYNANPSSMQAALENFKIMQADNK---MAILGAM 398

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+GE+S   H  + + L   +I  VWL G      +            + ++ +   I 
Sbjct: 399 RELGEVSAEEHQHVVDYLKTSDIKTVWLVGEEFEDTQ------CDFRKFKDVEEVKAAIA 452

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
           +    G  +++K SNS   Y+L  LL
Sbjct: 453 AEQPTGHYILIKGSNSTKLYQLPELL 478


>gi|212691758|ref|ZP_03299886.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|237724084|ref|ZP_04554565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. D4]
 gi|212665659|gb|EEB26231.1| hypothetical protein BACDOR_01253 [Bacteroides dorei DSM 17855]
 gi|229437544|gb|EEO47621.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides dorei
           5_1_36/D4]
          Length = 432

 Score =  213 bits (543), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G     +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTCIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E L   G   +  D     L         I      G+      +L         
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R + 
Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S   H
Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       V L+G     +           + + +  L   ++     G  +++
Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    +L  +L
Sbjct: 418 KGSNSMKLGQLQEIL 432


>gi|255692589|ref|ZP_05416264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621646|gb|EEX44517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 432

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 110/436 (25%), Positives = 181/436 (41%), Gaps = 18/436 (4%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            ++ DSR+      F A+KG  ++G+ F   A+  G    +++    A  G        V
Sbjct: 15  SVTTDSRNCPDGSLFIALKGESFNGNAFAKFALNSGCAYAIIDEGEYAVEG--DQRYILV 72

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+ L  + +LA   R +    +I ITG+ GKTTTKE+++  LS        +G+ NNHIG
Sbjct: 73  DNCLQTMQQLANYHRRQLGTKVIGITGTNGKTTTKELISTVLSQAHNVLYTLGNLNNHIG 132

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP TL R+  + D  + E+G +H GEI+FL  +  P   +IT +  AHL  F   E +  
Sbjct: 133 VPTTLLRLKPEHDLAVIEMGANHPGEIKFLCEIAEPDYGIITNVGKAHLEGFGSFEGVIK 192

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+++ L K     +        L+        I      G   N            E
Sbjct: 193 TKGELYDFLRKKENSTIFIHHDNPYLMNMSEELDRIYYGTQDGLYINGRITDNSPYLAFE 252

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               +     +   +    IG +   N L  + I      ++    +AL+ + P+  R +
Sbjct: 253 ---WKAGNGNEIHRIQTQLIGEYNFPNALAAITIGHFFGVEMQKIDEALAGYTPQNNRSQ 309

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    TLI ++YNANP SM AA+     ++      ++ +LGDM E+G  S   
Sbjct: 310 LKQTTDN----TLIIDAYNANPTSMMAALQNFRNMAVP---HKMLLLGDMRELGAESNIE 362

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +   +   N   VWL G    A +              +  +   +++    G  ++
Sbjct: 363 HQKIVNYIKDSNFEQVWLVGEQFAATQHNFKT------YANVQEVIKELETQKPKGYTIL 416

Query: 449 VKSSNSCGFYRLINLL 464
           +K SN       +  L
Sbjct: 417 IKGSNGIKLSSTVEHL 432


>gi|170288510|ref|YP_001738748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
 gi|170176013|gb|ACB09065.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           sp. RQ2]
          Length = 426

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 106/446 (23%), Positives = 188/446 (42%), Gaps = 24/446 (5%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                   ++S+ +   + F A+KG  +DGHDFI  A++ GA  ++     V S      
Sbjct: 3   DLLTRRFVLNSKEVREGDVFVAVKGKKFDGHDFIDEALRNGAYAIIAERKTVDSD----- 57

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +F V+  +  L KLA         T++ +TGS GKTTTKE+L   L + +  +   G+ 
Sbjct: 58  RIFLVESSVDTLAKLAREKLGNFSGTVVGVTGSSGKTTTKEILYNLLKNKRSVFKTPGNM 117

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N   G+PL++       +  + E+  S  G+I  L  +  P +AV+  +  AHL  F   
Sbjct: 118 NTEYGLPLSILNDYKGEEILVLEMAASRPGDIAHLCKIAPPDVAVLLNVGSAHLEFFGTR 177

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E I   K EI +  ++  T    +DD            +       F   +  D  L+ W
Sbjct: 178 ERIMETKMEIIKHSKENATAVTLFDDPDLRR------EVPCYRKTLFFGKEGGDSVLKDW 231

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +  E +       V   G        + +   +  +        I  L+     
Sbjct: 232 WYYEGSTIAEFEAFDSLFTVKLSGYWNGGQ-LLNIAASLCVMRALGETVDIFDLASLKTV 290

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR              ++D++YNA+P + + +I  L +      GRR AV+G M E+GE
Sbjct: 291 PGRFNVREKKG----VLIVDDTYNASPEAFQTSIEALLRFP----GRRFAVVGAMKELGE 342

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S+ FH +L E L++ +  +++LS      +K        +  S+  + +   + S + +
Sbjct: 343 RSKEFHEELGERLNVLDGVYIFLSEPEAEWIK----SKKIILKSDDPEKIAKDLASRVTE 398

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GDVV+ K+S +    +++ +  +E  
Sbjct: 399 GDVVLFKASRAVRIEKVLEMFEKELE 424


>gi|332297594|ref|YP_004439516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
 gi|332180697|gb|AEE16385.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Treponema
           brennaborense DSM 12168]
          Length = 488

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 120/488 (24%), Positives = 194/488 (39%), Gaps = 39/488 (7%)

Query: 2   NPLWTFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           + L +F + ++A+ G      G   +     ++ DSR++     F  + G   DGH +IL
Sbjct: 14  SSLLSFRETIEAVAGKYVCLAGAAERFHFTNVTTDSRTVTDGSLFVPLVGETQDGHKYIL 73

Query: 59  HAVQKGAGLVVVNTDMVA---------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            A+++GA +V  + +                       V + L AL   A A   +    
Sbjct: 74  QALEQGARVVFADLESYECLAGLFMDFLENYPDAVFIVVKNTLTALQCAAAAYVKKFPDL 133

Query: 110 I-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           I I ITGS GKTTTKE++   LS         G+ N+  G+PL++ ++  + + GIFE+G
Sbjct: 134 IKIGITGSSGKTTTKELIAAVLSRKYTVVMNEGNLNSETGLPLSVFKIRAEHEVGIFEMG 193

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           M+  GEI  L +++ P  AV+T I  AH+      + IA  K +IF         F+   
Sbjct: 194 MNRKGEIAELANVLCPRFAVVTNIGSAHIGILGSKDAIAYEKKQIFSRFTADCVAFIPAA 253

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L               G             +         +   + + ++    
Sbjct: 254 DPYADFLAENCG----------GTVVRYGVNTDPVSRIKNAGLAGTEFLYRQVPILLPLP 303

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     + L    + S +    D     L    P  GR +        G  +++ + YNA
Sbjct: 304 GAGNFSDALAAASLASYMGFGADDIKAGLESVRPLFGRSQII-----GGPVSVVQDCYNA 358

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM+ A+   + +     GR+IAVLGDM E+G  S+S H+      +      +   G
Sbjct: 359 NPDSMEQALDFFASLDIE-PGRKIAVLGDMLELGAESESAHVAAVRSAAASGAVLLVCIG 417

Query: 409 FHVLALKDALPR-----SIHVHYSET-----MDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V A  + L R     S+ V          +      +   L  GDVV++K S      
Sbjct: 418 RAVSAAAERLVREDRVGSVRVECFADSSDAVISDAAALLCGFLRRGDVVLLKGSRGMRLE 477

Query: 459 RLINLLLE 466
           RL   L E
Sbjct: 478 RLTPYLTE 485


>gi|150003104|ref|YP_001297848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775869|ref|ZP_06741368.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
 gi|149931528|gb|ABR38226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450238|gb|EFG18739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides vulgatus PC510]
          Length = 432

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G     +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E L   G   +  D     L         I      G+      +L         
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R + 
Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S   H
Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       V L+G     +           + + +  L   ++     G  +++
Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    +L  +L
Sbjct: 418 KGSNSMKLGQLQEIL 432


>gi|312140146|ref|YP_004007482.1| UDP-N-acetylmuramoyl-tripeptide-d-alanyl-d-alanin e ligase murf
           [Rhodococcus equi 103S]
 gi|311889485|emb|CBH48802.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase MurF
           [Rhodococcus equi 103S]
          Length = 506

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 135/496 (27%), Positives = 201/496 (40%), Gaps = 34/496 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + QA+ G       P   V+G +  DSR I P   F A+ G   DGHD   
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITPGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDD---VLGALNKLAVAARL 104
            AV             G   +VV     +  G+L++          VL AL KLA A+  
Sbjct: 60  GAVAAGAVAVLAARPVGVPAIVVEPLGTSGNGALALEHDRDGSGAAVLAALGKLARASVD 119

Query: 105 R----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           R    S  T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D 
Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L   
Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
                    +  + L A         +   G S NAD +    +   + ++   +     
Sbjct: 240 ADG-GVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDVRLDDQARASFTLTCAAG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++ V     G H   N L    +     A +D    AL    P   R    R   +    
Sbjct: 299 AVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSARRMEVRDRSDGV-- 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396
           T++++SYNANP SM+AAI  L  ++  G G      AVLG+M E+G  S   H  +    
Sbjct: 357 TVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIGRFA 416

Query: 397 SLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +++ + L G    V A+               +          ++  L  GD+V+VK
Sbjct: 417 VRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLVLVK 476

Query: 451 SSNSCGFYRLINLLLE 466
           +S S G + + + +L 
Sbjct: 477 ASQSIGLWEVADAVLA 492


>gi|237708647|ref|ZP_04539128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|265755303|ref|ZP_06090073.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
 gi|229457347|gb|EEO63068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 9_1_42FAA]
 gi|263234445|gb|EEZ20035.1| hypothetical protein HMPREF0105_3739 [Bacteroides sp. 3_1_33FAA]
          Length = 432

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 124/435 (28%), Positives = 195/435 (44%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G     +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E L   G   +  D     L         I      G+      +L         
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTAISQGLTRICYGMEGGEGLYISGKLGACAPFL-- 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R + 
Sbjct: 252 -SFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S   H
Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       V L+G     +           + + +  L   ++     G  +++
Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFQDVVALKESLERYKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    +L  +L
Sbjct: 418 KGSNSMKLGQLQEIL 432


>gi|325265591|ref|ZP_08132282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982939|gb|EGC18560.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella denitrificans ATCC 33394]
          Length = 456

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 124/454 (27%), Positives = 199/454 (43%), Gaps = 23/454 (5%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                    V  +  DSR     + F A+ G ++D HDF+   + KGA  +V  +D+   
Sbjct: 19  LPQPAENHPVCRVITDSRQAQEGDLFVALAGENHDAHDFVPDVLAKGARAIVSRSDLAGV 78

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            G      F V D L AL ++A A R      +  ITGS GKTT KEML   L +     
Sbjct: 79  AG-----CFFVPDTLHALQQMAAAWRKAVNPFVFGITGSSGKTTVKEMLAAVLRAKFGAD 133

Query: 138 ---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              A  G++NNHIG+PLTL  +     + + E+GM+H GE+  LT +  P  A++     
Sbjct: 134 AVLATAGNFNNHIGLPLTLLNLRGHHRYAVIEMGMNHFGELAALTRIAAPDTALVNNAMR 193

Query: 195 AHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           AH+   F+G+ +IA AK+EI++GL + G   L  +D+   + +A  + L   T      +
Sbjct: 194 AHIGCGFNGVADIARAKSEIYQGLPENGVALLPAEDANLPVFQAACNGLKTLTFG----A 249

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           +  D            S  ++    + + V     G H   N      +       +   
Sbjct: 250 EQGDIHAENIDLQPLSSTFDLVYGTERVRVSLPAAGRHNVANACAAAALAVQAGVSLAEI 309

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L+ F   +GR ++ R   N     ++D++YNANP SMKAA+ VL++        R+ 
Sbjct: 310 AIGLAAFGNIKGRLQQKRGIRN---ALILDDTYNANPDSMKAALDVLAKQPA----PRVF 362

Query: 374 VLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           V+GDM E+GE  +   H ++        I + +  G +     +    +    +    D 
Sbjct: 363 VMGDMGELGEAEAPKMHEEIGVYARELGIEYAYFVGDNSAQAAEKFGAA--GLWFADKDP 420

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           L L +   L +   V+VK S       + + L E
Sbjct: 421 LILSLAHDLPENASVLVKGSRFMRMEEVADALAE 454


>gi|329956058|ref|ZP_08296829.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
 gi|328524817|gb|EGF51871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides clarus YIT 12056]
          Length = 432

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 189/437 (43%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR+      F A+KG  ++G+ F   A++ G+   VV+    A  G        
Sbjct: 14  TGVTTDSRNCPEGSLFIALKGDTFNGNAFAAKALETGSAYAVVDEAAYAPAGDTH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD+ L  L +LA   R +    II ITG+ GKTTTKE+++  LS        +G+ NN I
Sbjct: 72  VDNCLRTLQQLANYHRRQLGTRIIGITGTNGKTTTKELISAVLSQKYNILYTLGNLNNPI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + + G+ E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLKAEHELGVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L + G   +         L   +  L   T                    +
Sbjct: 192 RTKGELYDYLRRQGNSTIFIHQDN-PYLTQIAWGLNPVTYGEEDNLYINGHVTGNSPYLT 250

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                +    G+  EV    IG +   N L  + I      +     KAL  + P+  R 
Sbjct: 251 --FEWKAGKAGERHEVQTQLIGDYNFPNALAAITIGHFFGVEAAKIDKALHEYEPRNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM AAIS    +     G ++ +LGDM E+G+ S  
Sbjct: 309 QLKKTADN----TLIIDAYNANPTSMLAAISNFHNMQA---GGKMLILGDMRELGKDSPG 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L  Y    V L G    A +   P             L   +Q +   G  +
Sbjct: 362 EHQKIVDCLEEYGFKDVALVGELFAATRHTYPT------YPDAPALIAELQKNKPCGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +++ L
Sbjct: 416 LIKGSNGIKLNTVVDYL 432


>gi|163841233|ref|YP_001625638.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954709|gb|ABY24224.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 515

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 196/472 (41%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T   +     G     V       V  I  DSR + P   + A  G H DGH FI
Sbjct: 1   MIEL-TAPRIAALTSGRLSRTVADELRINVAQICTDSREVQPGSVYVAKPGEHSDGHTFI 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAI 113
             A++ GA L++   ++  + G    P   V D + A+  +A       R   + T++ I
Sbjct: 60  EAAIEAGAILIIAEREIADAQGQP-FPAIIVADAVQAMGDIAAEVVQLIRANGEVTVLGI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTK++L   L  +  T A IGSYN  +GVPLT+ +  +   F + E+G + +G
Sbjct: 119 TGSAGKTTTKDLLAGILRQLGPTVAPIGSYNGEVGVPLTVFQADLTTRFLVIEMGATRIG 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I +L  LV+P I V+  I  AH   F G+E IA AK E+ E L  TGT  LN  D    
Sbjct: 179 HIEYLAGLVKPDIGVVLGIGSAHAGEFGGVENIAQAKGELVEALSPTGTAVLNLGDGRVS 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQL--RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + +++ A  +       +       +     +  S  +                     
Sbjct: 239 AMASRTVAPVLWFGEEGLRIPEGQTSVLAGNVQVGSNATPSFDLRFPDGSSWPIRSGLIG 298

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
           +     +     +   A  D    A  +         R   +      T+I+++YNANP 
Sbjct: 299 IHHVNNLLAAAAAAWAAGADGETIARGLDGQGPKSRWRMERSERADGVTVINDAYNANPD 358

Query: 352 SMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           SM+AA+ VL+++             + R  AVLG M ++G  S   H  L +V+   NIS
Sbjct: 359 SMRAALRVLAELGRGGADENGKILPQRRTWAVLGPMFQLGAESIREHNALGQVVVRLNIS 418

Query: 403 HVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            + + G    AL               +   +D  +  +Q  L  GD+V+ K
Sbjct: 419 RLLVIGAEARALHIGAINEGSWGEESVHVPDLDSAYALLQEELKPGDIVLFK 470


>gi|282878040|ref|ZP_06286848.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
 gi|281299875|gb|EFA92236.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella buccalis ATCC 35310]
          Length = 446

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 200/446 (44%), Gaps = 26/446 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G++F   A++KG    V++                V+
Sbjct: 16  VTTDSRDCPKDSMFFALKGTSFNGNEFAQSALEKGCAYAVIDQK--EYQIQEDERYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R      II ITG+ GKTTTKE+L   L+     +   G++NN IGV
Sbjct: 74  DCLQTLKQLANYHRRTLGTPIIGITGTNGKTTTKELLATVLAERFNVWYTQGNFNNEIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  + +  + E+G SH G+I+ L  +  P  A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLCLKPEHEMAVVEMGASHPGDIQSLVTVAEPDYALITNVGRAHLQGFGSFEGVMRT 193

Query: 210 KAEIFEGLEKT-----------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           KAE+++ +++                     +    +KA  +A   +   S      +  
Sbjct: 194 KAELYDYMQQHKPQGLVFINQDNEYLKEMFRTHCPNVKAMGYAQTDRPDISIRGEVVSCA 253

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              K++     +    +   +  EV    IG +   NML  + I S      +    AL+
Sbjct: 254 PYLKFRWRKTAAAPSPREDTRWHEVQTQLIGAYNLDNMLAAITIGSHFGVSDEQINHALA 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            + P   R +    A N+    LI ++YNANP SM+AA++   ++    +   +A+LGDM
Sbjct: 314 GYVPSNNRSQLQITAHNK----LIVDAYNANPTSMEAALTNFQRMDVPKK---MAILGDM 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+G++S + H  + ++++  N+  VWL G         L +       +  + +   ++
Sbjct: 367 RELGDVSMAEHQKIVDLIATLNLDKVWLVGEEFGRTNTTLRK------FKDTEAVREALR 420

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
                G  +++K SN    ++L  LL
Sbjct: 421 QEPPQGYYILIKGSNGIKLFQLPELL 446


>gi|282896502|ref|ZP_06304522.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
 gi|281198608|gb|EFA73489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Raphidiopsis
           brookii D9]
          Length = 437

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 186/443 (41%), Gaps = 29/443 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M    T   L   +    + I        + GI  D+R + P E F A+ G  +DGH F+
Sbjct: 1   MTVTATLSQLAAVLSASLLNIPSSSLSQVIVGIQTDTRVLQPGEIFLALGGEKFDGHQFV 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A+ +GA   +V+     +    ++PV  V + L A  +LA   R +    +I +TGSV
Sbjct: 61  EMAIARGAVAAIVD----YTYDYPNLPVIKVSNTLNAYQELAKWWRGQFGIPVIGVTGSV 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE++   L +  K +   G++NN IGVP TL  +    DF + E+ M   G+I  
Sbjct: 117 GKTTTKELIASVLGTRGKVHKTYGNFNNEIGVPKTLLELSEGDDFAVIEMAMRGRGQIGE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LTH+ +P+I VIT +  AH+      + IA AK E+   +       LNYD+        
Sbjct: 177 LTHIAKPNIGVITNVGTAHIELLGSEQAIAEAKCELLAEMPNDSVAVLNYDNPLLMTTAK 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +  + +    G                 +     +++   M +     G H   N L
Sbjct: 237 QVWSGEVISYGFSGGD------------IQGKLVDYQKIEVGGMTLPLPLTGVHNGSNFL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +  +L  D       ++          R +         ++DE+YNA P +M AA+
Sbjct: 285 AALAVAKVLDVDWKLLEAGIN----VTMPQGRSQSWKLPKDIMILDETYNAAPEAMLAAL 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--HVWLSGFHVLALK 415
            +L+Q     +   IAVLG M E+GE S   H  + E +   N+    V + G     + 
Sbjct: 341 ELLAQTPGRRK---IAVLGAMKELGERSAKLHQQVGETVRKLNLDGLLVLVDGPDAEIIA 397

Query: 416 DALPRSIHVHYSETMDGLFLFIQ 438
            +  + I          L   ++
Sbjct: 398 TSA-QGIPCERCHNHSDLVSLLK 419


>gi|33861167|ref|NP_892728.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33639899|emb|CAE19069.1| Cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 456

 Score =  213 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 189/440 (42%), Gaps = 14/440 (3%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              IS+DSR+I  +E F AIKG ++DGH+F+   ++KG   VV+  + + ++     P +
Sbjct: 28  FKNISLDSRTILNRELFIAIKGTNFDGHNFLNEVIKKGVKAVVI-KEGMQNLLPYKFPFW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D L A  KLA+  R +    ++ ITGSVGKTTTKEM+   L  + K      ++NN 
Sbjct: 87  TVPDTLEAFQKLALFKRRKLNIPVVGITGSVGKTTTKEMMGEVLKQLGKIKLSQLNFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+          I E+GM  LG+I  L+    P IAVIT I  +H+      E I
Sbjct: 147 IGVGLTILDSDFKDKTLILEMGMRGLGQIENLSKFSEPDIAVITNIGSSHIGILGSKENI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI + L   G + +  +D F E    ++    I  +    K        +K +  
Sbjct: 207 TYAKCEITKHLNPKGVVIIPANDLFLEETLKRNWNGRIIKVDLLDK-------NQKAQSL 259

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           ++ +      +  +  ++   I     Q        + +     +  IK           
Sbjct: 260 NKTNLQGFYNRSNNSVIIEDKIFEISFQGFHNAFNFLFVYAVAKELGIKFKDTNKFNFVS 319

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                  L     T+ DE+YNA+P S+KA I+ L             + G M E+G  SQ
Sbjct: 320 LNGRNKILKSKKTTIYDETYNASPESVKACINNL----LDNPNNHFLIFGSMQELGNKSQ 375

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLAL--KDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +H DL E++   +I            +   D L +S    +   ++ +   I      G
Sbjct: 376 KYHKDLFELIDRSDIKKCIFICDKNDEIYYADYLKKSTKFLFLNEINKVGETINKYTKMG 435

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D +++K S      ++I  +
Sbjct: 436 DFILIKGSRCWHLEKVIKSI 455


>gi|260576884|ref|ZP_05844867.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
 gi|259020921|gb|EEW24234.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhodobacter
           sp. SW2]
          Length = 478

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 176/475 (37%), Positives = 247/475 (52%), Gaps = 18/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  D   A  G S  +      +G+SID+R++ P + F A+K    DGHDF+  A
Sbjct: 1   MAPLWTSTDAATATGGRSTTV---WQAHGVSIDTRTLQPGDLFVALKDVR-DGHDFVAAA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA   +V+   +    + + P+  V DVL  L  L  A R R++A +I +TGSVGKT
Sbjct: 57  LAKGAAAALVSR--IPEGVAANAPLLIVPDVLAGLEALGRAGRARARARVIGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLAR+P   DF + E+GM+H GEI  L  
Sbjct: 115 STKEMLRCMLLGQGSVHAAEASYNNHWGVPLTLARLPATADFAVIEIGMNHPGEIAPLAR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + R H+A+ITTIA AHL+ F G+E IA  KA I +GLE  G   L  D +   +L     
Sbjct: 175 MARLHVALITTIATAHLAAFDGLEGIAREKATIIQGLEPGGIAVLPTDLAVSPVLLR--- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A       +FG +K+ADFQ+      ++ + ++    G    +     G H A N +  L
Sbjct: 232 AASAVRSLTFGTAKSADFQMLDVTLTADATIVQASHHGARRLLKLSAPGRHFAMNAMGCL 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT---LIDESYNANPASMKAAI 357
            +   L+ D   A   L  + P  GRG R R  L+        LID++YNANPAS+ AA+
Sbjct: 292 AVAEALSLDPTIATHDLGRWQPPAGRGMRERIVLDAVDDLSFELIDDAYNANPASLAAAL 351

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            VL+   P         GRRIA+LGDM E+GE   + H+ +A    L  IS +   G  +
Sbjct: 352 EVLAASQPTDGVGRIQHGRRIAILGDMLELGEGEAALHVAVAANPHLAAISTIHCVGPLM 411

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             L DALP+     +  T   L     + +  GD+V+VK S       +++ L +
Sbjct: 412 RGLHDALPKRQRGEWVATAPELLARAATLVDAGDIVLVKGSKGIKVSLMVDGLRK 466


>gi|221213281|ref|ZP_03586256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
 gi|221166733|gb|EED99204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD1]
          Length = 468

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAQAPAGVALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEI 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F    +      +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  R +       T++D++YNANP SM+AA
Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++       V+VK S      R+++ L  +
Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|319786249|ref|YP_004145724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464761|gb|ADV26493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 471

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 122/479 (25%), Positives = 197/479 (41%), Gaps = 38/479 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L     G   G  P   V+ I+ D+R+++    + A++G  +DGHDF   A+ +GA 
Sbjct: 6   LSLLAHWAGGELHG--PDVAVDAIAHDTRALSAGSLYLALRGERFDGHDFAADALARGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V       +  +  P   V+D   AL ++A   +    A ++AITGS GKT+ K ++
Sbjct: 64  ALLVER-----LLDVDAPQLLVEDSELALARIAAGMQRGRDAKVVAITGSNGKTSVKALV 118

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L    + YA  G+ NN IG+PL +   P D DF I+E+G    G+I +LT + RP +
Sbjct: 119 LSVLQQAGQAYANPGNRNNEIGLPLAVIDAPEDADFAIYEMGAGKPGDIAYLTDIARPDV 178

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK--SHALGI 244
           +++  IA AHL     +  +A+ K  I+  L   GT  +N DD+F    + +    A   
Sbjct: 179 SLVNNIAAAHLERMGDLLGVATTKGAIYAALPAGGTAVVNADDAFGAWFEQEVVRPAGTG 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + +  FG   +A+   R  +  +E S   +        +     G H  +N L    I  
Sbjct: 239 RQLLRFGLDASAEVTARDVQAGAEGSRFVLVTPQGEAAIELALPGRHNVRNALAAAAIGL 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +      L    P  GR   +          L+D+SYNANP S+ AAI       
Sbjct: 299 ACGVSLAAIAAGLGQARPVAGRQVAHGLPGG---VVLVDDSYNANPGSVAAAIDA----L 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                    VLGDM E+G  + + H D         ++ ++  G        A       
Sbjct: 352 AASGDEAWLVLGDMRELGPEAATLHADAGLRARQAGLARLYALGELSAHAARAFGDEGR- 410

Query: 425 HYSETMDGLFLFIQ----------------SSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + ++   L   +                   L     V+VK S      R++N LL +
Sbjct: 411 -HFDSHQALAAALAADLAARAPADAAGAEGRRLR----VLVKGSRGSAMDRIVNALLAQ 464


>gi|255534719|ref|YP_003095090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340915|gb|ACU07028.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 427

 Score =  213 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 95/437 (21%), Positives = 175/437 (40%), Gaps = 27/437 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
             +IDSR++   + FFA  G  ++       A  KGA  V+V      +       +F V
Sbjct: 18  NATIDSRTLKKDDIFFAFSGDSFNAATLAEDAADKGALAVIVEQKAYENPARD---IFYV 74

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              L  L +LA   R +    +IA+TGS GKTTTKE++   L+         G+ NNHIG
Sbjct: 75  PSTLNFLQELATHHRDQLDIPVIALTGSNGKTTTKEIIHAVLAQKYNVQYTSGNLNNHIG 134

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL  +    +  + E+G +H  EI  L  + +P    IT    AHL  F G E +  
Sbjct: 135 VPLTLLSVRSHHNMAVIEMGANHQKEIEMLCEIAKPTYGYITNFGKAHLEGFGGFEGVIK 194

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+E++  L                 L  ++ A+ ++    +            +     
Sbjct: 195 GKSEMYSYLRANSQTI----------LVNENDAIQVENTAGYSPVITFGKPDSDYLFEEV 244

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   V L+           G +   N+     +             A+  + P   R +
Sbjct: 245 SNQNFVGLRFGDQTAHSQLTGSYNFTNLCAAASLGLHFGISFREIKTAIENYVPTNMRSQ 304

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                      TL+ ++YNANP+SM+ ++   ++     EG +  ++GDM E+G  S++ 
Sbjct: 305 ILEKNGK----TLVLDTYNANPSSMEESLKNFNRF----EGSKTIIIGDMLELGNESEAE 356

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + ++        V   G +   +      +      ++   L   ++ + ++   ++
Sbjct: 357 HRRILDLAGSLAFDAVVTVGENFRRI------NPGSQSYKSAQELADALKLNPINSQNIL 410

Query: 449 VKSSNSCGFYRLINLLL 465
           +K S      ++++ ++
Sbjct: 411 LKGSRGIALEKILDFIV 427


>gi|107021634|ref|YP_619961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688579|ref|YP_834202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891823|gb|ABF74988.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646668|gb|ABK07309.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia cenocepacia HI2424]
          Length = 468

 Score =  212 bits (540), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 195/474 (41%), Gaps = 23/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++        N +S DSR++   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDAGVTFNRVSTDSRTVGAGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHAPAGIAMPMIEGGETRAALGALAHGWRMRFPLPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + E+GM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLSAAHRLAVIEIGMNHPGETEV 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + ++ +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVDAVALEHAAVIHALPPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAERQNDAQVVGRMHGGELAIDTPAGAVTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  +    + G  T++D++YNANP SM+AA
Sbjct: 293 AATAAALGAGVALSAIRQGLEAFEPVKGRLQVKQASVGSLGGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAHPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACT 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++         V+VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFDDVGALVSALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|326334339|ref|ZP_08200553.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693498|gb|EGD35423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 423

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 118/433 (27%), Positives = 194/433 (44%), Gaps = 23/433 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ D+R       FF ++G  ++G++F+  A++KGA  VV N    + +         
Sbjct: 12  KGVATDTRKDLTDMLFFCLQGERFNGNEFVPIAIEKGARYVVTNDKKWSYLPQA----IL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L +LA+  R      IIA+TGS GKTTTKE++   L+   +T    G++NNH+
Sbjct: 68  VEDTLKTLQELALYHRHYLATPIIALTGSNGKTTTKELIYSVLNQSFRTLKTEGNFNNHL 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D  I E+G +H GEI  L  +  P    IT    AHL  F   E + 
Sbjct: 128 GVPLTLLRLTPETDIAIVEMGANHPGEIAQLCRIAEPDFGYITNFGRAHLEGFGSFEGVI 187

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK+E++  L+K         D+  ++        G    YSF        +    +   
Sbjct: 188 QAKSELYNYLKKDNKRIFFCQDNEIQV----RLLNGYSNTYSFS---MEGNKKANLQLSL 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +  + V+L  +   +  H IG + A N+   + I +      +  I  +  + P   R 
Sbjct: 241 YKESLLVKLHWEESNIQTHLIGKYNAMNVAAAICIGNYFKLTKEAIIHGIEGYIPTNNR- 299

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +         ++ ++YNANP+SM AAI    +I    +   I +LGDM E+G+ S +
Sbjct: 300 --SQFVEKAHGNKILMDAYNANPSSMHAAIEAFKEIPSANK---ILILGDMKELGDYSPA 354

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L   ++LY    V L G +    +    +        T++ +  ++          
Sbjct: 355 EHQQLVNDIALYPWEAVLLVGENFWNTQTNFLK------FHTLEEVNAYLAQQHFVNTFF 408

Query: 448 VVKSSNSCGFYRL 460
           +VK S S    R+
Sbjct: 409 LVKGSRSMTMERI 421


>gi|332885521|gb|EGK05770.1| hypothetical protein HMPREF9456_02572 [Dysgonomonas mossii DSM
           22836]
          Length = 429

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 202/436 (46%), Gaps = 23/436 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+      FFA+KG +++G+++   A+ +G    VV+ +  A+  +    +  V 
Sbjct: 16  ISTDTRNSPKDSIFFALKGANFNGNEYAEKAIDQGCAYAVVDEERYATRPN----IILVK 71

Query: 90  DVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D L  L +LA   R +  K  IIAITG+ GKTTTKE++   LS      A  G+ NNHIG
Sbjct: 72  DSLETLQELARHHRKQFIKKPIIAITGTNGKTTTKELIYSVLSQEYNVLATQGNLNNHIG 131

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL R+  + +  I E+G SH+GEIRFL  +  P+  +IT +  AH+  F   E +  
Sbjct: 132 VPLTLLRIKKEHEIVIVEMGASHVGEIRFLAEMALPNYGLITNLGHAHIEGFGSFENVVK 191

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E++E +  T          +  LL  +         Y          ++        
Sbjct: 192 AKGELYEFIRSTKD--GKIFIDYSNLLLREMSEGITSIYYGLEDDLFISGKVTSISPFL- 248

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E +   K  +V  + IG +   N L  + I   L        KA+  + P   R +
Sbjct: 249 --ALEWKFGSKRNKVQTNMIGEYNLSNALAAITIGKYLGVKASLICKAIEEYVPTNNRSQ 306

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N     LI ++YNANP SM AA+     +  +    ++ +LGDM E+G  +   
Sbjct: 307 LKKTEKNM----LIIDAYNANPTSMHAALENFDHMDVN---HKVLILGDMKELGPDTDME 359

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  +A+ +S +N   V   G +   +K   PR       + +D L  +++   V+   ++
Sbjct: 360 HQKIADYISDHNFERVMFIGDNFSRVKTKYPR------FKNLDDLKEYLKKDPVEDSYIL 413

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      + I++L
Sbjct: 414 LKGSRGVQLEKCIDML 429


>gi|317504089|ref|ZP_07962091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
 gi|315664761|gb|EFV04426.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella salivae DSM 15606]
          Length = 446

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 116/438 (26%), Positives = 198/438 (45%), Gaps = 18/438 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A++KG    +++    A   +    +  VD
Sbjct: 24  ITTDSRNCPKDSIFLALKGASFDGNKFAKAALEKGCAYAIIDEPAYAEADND--RLILVD 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    ++A   R   +  +I ITG+ GKTTTKE+++  L+   +     G++NN +GV
Sbjct: 82  DCLKTFKEIAREHRRSFQIPVIGITGTNGKTTTKELVSAVLAERYRVMHTEGNFNNDVGV 141

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L   V P   +IT +  AHL  F   E +   
Sbjct: 142 PKTLLRLDATHEIAVVEMGASHPGDIEKLVTYVEPTCGMITNVGRAHLLGFGSFEGVKRT 201

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+    +    + +   +  A+   +     Y      N   ++         
Sbjct: 202 KGELYDYLKAHDGLLFLNESNADLVEMARQREMNRIMTYGQSDDANVQGEVLDCAPFLRF 261

Query: 270 SWMEV---QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +W  +   + + ++ +V  H IG +   NML  + I        +    ALS + P   R
Sbjct: 262 TWRNMATTESKVRTYDVQTHLIGAYNIDNMLAAITIGLHFGVTPEQINHALSHYIPANNR 321

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +    A N+    LI ++YNANP+SM AA+     ++      ++A+LGDM E+GE+S 
Sbjct: 322 SQLEVTAKNK----LIVDAYNANPSSMAAAVENFKLMNVE---HKMAILGDMRELGEVSA 374

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  L + L+      VWL G      + A  +       + +D +   I +   +   
Sbjct: 375 LEHQKLVDKLAEDGFKEVWLVGEEFGKTQTAFRK------FKNVDEVKAEIAAHCPENYY 428

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SN    + L  LL
Sbjct: 429 ILIKGSNGIKLFELPELL 446


>gi|125717546|ref|YP_001034679.1| D-Ala-D-Ala adding enzyme [Streptococcus sanguinis SK36]
 gi|125497463|gb|ABN44129.1| D-Ala-D-Ala adding enzyme, putative [Streptococcus sanguinis SK36]
          Length = 456

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/470 (25%), Positives = 202/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L++L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSNLAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  ++S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADAKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|320106148|ref|YP_004181738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924669|gb|ADV81744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Terriglobus
           saanensis SP1PR4]
          Length = 471

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 131/470 (27%), Positives = 203/470 (43%), Gaps = 15/470 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +   I      +     V G SIDSR++   E FFA+ G  +DGH+F+  A++ G
Sbjct: 3   LTLGQVADWIHAEGEFVSTDEVV-GYSIDSRTVGAGELFFAVMGERFDGHEFVKTALEAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A   VV+   V S       +  V D    VL AL KLA   R      +I +TGS GKT
Sbjct: 62  AVAAVVSMRWVVSAEVDPCKLLRVPDGEDCVLSALQKLAREVRKSWGGRVIGVTGSAGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE +   L++  K     G+ NNH GVPL L R+  +    + E+GM+H GEI  L  
Sbjct: 122 TTKECVAAVLAAKFKVLKSAGNLNNHFGVPLQLLRLEKEHQVAVIEMGMNHAGEIATLAK 181

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +  P  AV++ +A  HL  F  G+E IA AK E+ + L   G  FLN DD F        
Sbjct: 182 IAEPDWAVVSNVAAVHLEFFADGMEGIARAKKELVDALPAAGVAFLNADDVFVSTFGEGH 241

Query: 240 HALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A       +   +         +  Q   Q           M      +G H   N L 
Sbjct: 242 EARMFGLSETADVRGVEVKNVGLEGMQFVVQVTAREGRVADKMRARIALLGEHNVYNALA 301

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       +   + AL    P + RG+            LI++SYN+NP +++A + 
Sbjct: 302 AIAVGLESGMTLGECVFALDSVVPSDKRGEMIEWHG----ARLINDSYNSNPRALEAMVD 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  I     GR I + G+M E+G+ +   H      ++   +  V        +L    
Sbjct: 358 ALMAI---EGGRHIVIAGEMLELGQDAGKLHAASGRQMAKRGVDVVVGVRGFAESLAGVA 414

Query: 419 P-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   + +T +    +++++L +GDVV++K+S      + +  L+E+
Sbjct: 415 KMSGAEALFVKTPEEAGAWMKANLREGDVVLLKASRGVRLEKALASLVED 464


>gi|260767161|ref|ZP_05876104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
 gi|260617835|gb|EEX43011.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [Vibrio
           furnissii CIP 102972]
          Length = 453

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 211/472 (44%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   L   +    +G      +  +S D+RSIA    F A+ G  +D H+F   A
Sbjct: 1   MIRL-SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V   +      +++P   V +   AL +L      +     +AITGS GKT
Sbjct: 58  VAAGAKALLVERAL-----DVNVPQLVVSNTKTALGQLGSWVHQQCHTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS+  +     G++NN IGVPLTL R     D+ + ELG +H+GEI +   
Sbjct: 113 TVKEMVASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL    T  +N D     L ++   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGYTAVVNLDSQGGALWQS-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      +S  +     +        + ++   +      + V    IG H   N L   
Sbjct: 232 ADKSVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+     +GR             TLID+SYNA+  +MKAA+ +L
Sbjct: 292 ALAIEMGATLADIQHGLAHLSKVKGRVDVTEL---TDHITLIDDSYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              S      R  +LG+M E+GE S + H  + E  + +   +V   G     + D    
Sbjct: 349 GGFSA----TRWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDG--DVVVVKSSNSCGFYRLINLLLEEF 468
             H  +  +   + +FI+  L        V++VK +NS G  +++  L E++
Sbjct: 402 -CHGRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|254882385|ref|ZP_05255095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|319640562|ref|ZP_07995282.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
 gi|254835178|gb|EET15487.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Bacteroides sp. 4_3_47FAA]
 gi|317387839|gb|EFV68698.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Bacteroides sp. 3_1_40A]
          Length = 432

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 125/435 (28%), Positives = 200/435 (45%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ + L A++KG    VV+    A+ G     +  VD
Sbjct: 16  VTTDSRNCPEGSMFIALKGETFNGNAYALQALEKGCQYAVVDEKEYAADGHP--RILLVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL +LA   R +    II ITG+ GKTTTKE++   L    +     G+ NNHIGV
Sbjct: 74  DCLKALQELANYHRHKMGTRIIGITGTNGKTTTKELIASVLQKRYEVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ LT +V P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTPEHELAVIEMGANHPGEIKALTRIVEPDYGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E L   G   +  D     L      + G+  I    + +   +   K   C+  
Sbjct: 194 KGELYEHLRYNGKHIIFIDKDNEYLTA---ISQGLTRICYGMEGREGLYISGKLGACAPF 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E + +G+  EV  H IG +  +N L  + +    +       +AL  + P   R + 
Sbjct: 251 LSFEWEHEGQKFEVNTHLIGSYNMKNALAAITVGRFFSVPSRQICEALEAYVPHNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    LI ++YNANP SM AA+     ++      ++ +LGDM E+GE S   H
Sbjct: 311 TETTDNK----LIVDAYNANPTSMMAALENFRLMNVA---HKMVILGDMKELGETSHEEH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A+ L       V L+G     +           + + +  L   ++     G  +++
Sbjct: 364 QKIADYLDECKFDRVLLAGEEFGKVI------PSFEHFKDVVALKESLERYKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    +L  +L
Sbjct: 418 KGSNSMKLAQLQEIL 432


>gi|189464363|ref|ZP_03013148.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
 gi|189438153|gb|EDV07138.1| hypothetical protein BACINT_00704 [Bacteroides intestinalis DSM
           17393]
          Length = 432

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 187/437 (42%), Gaps = 18/437 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++ DSR+      F A+KG +++G+ F   A++ G+   +V+    A  G        
Sbjct: 14  TSVTTDSRNCPEGSLFIALKGDNFNGNAFATKALESGSNYAIVDEVEYAPAGDPH--YIL 71

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VD  L  L +LA   R +    II ITG+ GKTTTKE++   LS         G+ NNHI
Sbjct: 72  VDSCLHTLQELANYHRRQIGTRIIGITGTNGKTTTKELIAAVLSPKYTILYTQGNLNNHI 131

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL R+  + D GI E+G SH G+I+ L  +  P   +IT +  AHL  F   E + 
Sbjct: 132 GVPLTLLRLKAEHDLGIIEMGASHPGDIKELVDIAEPDYGIITNVGKAHLEGFGSFEGVI 191

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K E+++ L +     +         L  ++ A G+  I    +               
Sbjct: 192 KTKGELYDYLRERKDSTIFIHHDN---LYLRNIAWGLNQISYGSEDGLYINGHVTGNSPY 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                +    G+  EV    IG +   N L  + I      +      AL  + P+  R 
Sbjct: 249 LTFEWKAGKDGEHHEVKTQLIGEYNFANALAAVTIGHFFDVESGKIDTALKEYTPQNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  + A N    TLI ++YNANP SM+A+IS    +    +   + +LGDM E+G+    
Sbjct: 309 QLKQTADN----TLIIDAYNANPTSMQASISNFHNMEIDNK---MLILGDMRELGKDGPK 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + + L+      V L G    A +   P             +   +Q +   G  +
Sbjct: 362 EHQKIVDFLTECGFKDVMLVGEQFAAARHDFPT------YPDAPAVIEALQKNKPHGKTI 415

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K SN      +I+ L
Sbjct: 416 LIKGSNGIKLSTVIDYL 432


>gi|46446887|ref|YP_008252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanine-ligase murF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400528|emb|CAF23977.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine-ligase murF
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 445

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 107/463 (23%), Positives = 202/463 (43%), Gaps = 22/463 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   + + +         +G V G  +DSR     E F A++G H DGH ++    QK
Sbjct: 3   IMTLKQIAKILNSSL--PEVEGVVKGFCVDSRLTKKNEVFVALRGEHVDGHAYLNEVKQK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+ +    +    + +F  ++ L AL  LA     ++   ++A+TGS+GKTTTK
Sbjct: 61  GALAAIVDQNYQGPV--FGMHLFRTENPLLALQMLAQKCLEKTS-RVVAVTGSIGKTTTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLV 182
           E +   L     T A  G+ N+ +G+PLT+       +   + E+GM+  G++  L ++ 
Sbjct: 118 EFIKTLLEQRYVTAASQGNSNSQVGLPLTVLNHTTGTEDILVLEMGMTEPGQLSTLVNIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P ++V+TT A  H   F  +++IA  KAEIF        +     +++  + +      
Sbjct: 178 HPEVSVLTTAALVHACRFETLKDIALTKAEIFSHSHTRLGVVDREIEAYETIAQIGECKK 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  S     + +    + +  +E   + +       +   H        N+L  + +
Sbjct: 238 ISFSTVSSRADYHLETVNEEVRLKTEGQSISLGKMCLPGKHNLH--------NLLAAIAV 289

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   +A+      E R +  +          +++SYNA+  S+K+A+  L  
Sbjct: 290 ARYFELTWNEIKQAIPFLKLPERRLQFVQKEGVY----FLNDSYNASELSVKSALETL-- 343

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +  G+G +IAVLG M E+G  S   H  + E    Y +  ++  G   L + +   ++ 
Sbjct: 344 PNATGKGYKIAVLGSMMELGHFSDECHQRVGEFALNY-VDKMYCLGAECLPIVEVWKKAN 402

Query: 423 H-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             V        L   ++ +L   DVV++K S S   ++++  L
Sbjct: 403 RPVELFMERSELISTLKKNLKPADVVLLKGSRSKELWKILEEL 445


>gi|213964055|ref|ZP_03392297.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
 gi|213953281|gb|EEB64621.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sputigena Capno]
          Length = 443

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 190/443 (42%), Gaps = 21/443 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+S D+R+IA    +FA+KG  ++G+ F   A++KGA   V++          S  +  
Sbjct: 12  TGVSTDTRNIAKGSIYFALKGASFNGNTFAAEALEKGAQYAVIDEVAY----QTSDKMIL 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V DVL  L +LA   R   K  +I ITGS GKTTTKE++   LS      A  G+ NN+I
Sbjct: 68  VSDVLTTLQELATYHRNTLKTLVIGITGSNGKTTTKELIKSVLSQQLNVVATQGNLNNNI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +  + D  I E+G +H GEI FL ++ +P    IT+I  AHL  F   E + 
Sbjct: 128 GVPLTLLSIKPETDIAIVEMGANHPGEIAFLCNIAQPDYGYITSIGKAHLEGFGSFEGVI 187

Query: 208 SAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA-------LGIKTIYSFGKSKNADFQ 259
             K E+++       TI  N D+   E L A            G+        ++    Q
Sbjct: 188 QTKGELYDYLKAHQKTIIANADNPITEALLADYDNDYSFGVGKGVNVAVQCVGTQPVTIQ 247

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  + +    V ++G +            + N    +            + +A+  
Sbjct: 248 FEDASTQTTEEGERVLIEGFTDAPTVATSHLVGSYNFTN-IAAAVAFGKFFKLSNEAIKR 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                         +  G  T++ ++YNANP+SM AAI  L  +S   +   + +LGDM 
Sbjct: 307 GIEAYIPQNNRSQLMQWGSNTVLLDAYNANPSSMAAAIDNLLTMSDEKKK--VLILGDMF 364

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G  +   H  + + L  Y    V+L G +    +   P+       ET +       +
Sbjct: 365 ELGNYAAEEHQRIVDKLKNYEWEGVYLVGSNFAKTQSPYPQ------YETFEAFKEVFPT 418

Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462
              +  ++++K S      RLI 
Sbjct: 419 LSFNNCLLLIKGSRGMALERLIQ 441


>gi|146299318|ref|YP_001193909.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
 gi|22094897|gb|AAM92032.1| MurF [Flavobacterium johnsoniae]
 gi|146153736|gb|ABQ04590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Flavobacterium johnsoniae UW101]
          Length = 428

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 207/436 (47%), Gaps = 23/436 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +SID+R I     FFAIKG ++D + F   A+  GA  VV++ +       +      V
Sbjct: 15  SLSIDTRKIEKGSMFFAIKGENFDANTFAKEALDLGALYVVIDNESYF----IDDRTILV 70

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           ++ L  L +L+   R   K  I+A+TGS GKTTTKE++ + LS   KT A IG+ NNHIG
Sbjct: 71  NNSLETLQELSKFHRNYLKLPIVALTGSNGKTTTKELINVVLSKKFKTKATIGNLNNHIG 130

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLTL     + + GI E+G +H  EI FL  + +P    IT    AHL  F G++ +  
Sbjct: 131 VPLTLLSFTKETEIGIVEMGANHKKEIEFLCEIAQPDYGYITNFGKAHLEGFGGVQGVIE 190

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+E+++ L K         +   ++             ++FG     + +    K  + 
Sbjct: 191 GKSEMYQYLLKNNKTVFVNLEDPIQI-----EKSTGIKNFTFG----VNKESADLKIKNI 241

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q+   V ++ +  +V  H IG + A N+   + I      +     +A+  + P   R +
Sbjct: 242 QANPFVVIEYEDFKVESHLIGLYNANNINAAVSIGKYFNVEDALIKEAIENYIPANNRSQ 301

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N+    +I ++YNANP+SM  AI+   Q+    +   I +LGDM E+G  S   
Sbjct: 302 LLKKGSNE----IILDAYNANPSSMAVAITNFLQLENQNK---IMILGDMFELGNESHEE 354

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  + + LS  N S  +L G    +  +    + ++ + ET D    ++++     + ++
Sbjct: 355 HKAIVDSLSNQNKSKCYLIG---KSFYENKISNENIQFYETFDAFAAYLKTIEFKDNTIL 411

Query: 449 VKSSNSCGFYRLINLL 464
           +K S      R ++ +
Sbjct: 412 IKGSRGMALERTLDYI 427


>gi|319440252|ref|ZP_07989408.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium variabile DSM 44702]
          Length = 505

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 124/495 (25%), Positives = 194/495 (39%), Gaps = 32/495 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T  ++     G  + G  P   V G +  DSR +     + A+ G   DGHDF+ 
Sbjct: 1   MIEL-TAGEIADITGGTLVDGADPDTVVTGPVEFDSRRVTAGSVYMALPGARVDGHDFVG 59

Query: 59  HAVQKGAGLVVVNT---------DMVASIGSLSIPVFGVDD--------VLGALNKLAVA 101
            A++ GA LV+              V            +D+        V+ A+++LA  
Sbjct: 60  PALEAGAALVMAGRPTALPELLCPAVEEEQGTQRNASYLDNDPDGLGERVITAVSRLARH 119

Query: 102 ----ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                   ++ T+I +TGS GKT+TK++L    S   +T A  GS NN IG P T+ +  
Sbjct: 120 STEVLVAENRLTVIGVTGSAGKTSTKDLLGAVFSRDGETIAPPGSLNNEIGHPYTVLKAG 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + + E+     G I  L  +  P I V+  +  AHL  F   E IA AK E+ E L
Sbjct: 180 RTTKYLVAEMSARGQGHIAHLARIAPPRIGVVLNVGTAHLGEFGSREGIAQAKGELVEAL 239

Query: 218 EKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                     LN DD     +  ++ A  +      G    AD++              +
Sbjct: 240 PPAAEGGVAVLNADDDLVSGMAPRTAARVVYYSADQGADGTADYRASDITLDEVARASFL 299

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               +   V      +             + +   +  +  A ++         R     
Sbjct: 300 LHHPEGEPVKVSLGVFGAHNVANALAAAAAAIECGLAPSEVASALTGYTAASANRMDVRT 359

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR-IAVLGDMCEMGELSQSFHIDLA 393
                T+I++SYNANP SM+A I  L+  +    G    AVLG M E+GE +   H  + 
Sbjct: 360 RPDGLTVINDSYNANPDSMRAGIDALAHAASTRTGTESWAVLGQMAELGEDAVGEHTGIG 419

Query: 394 EVLSLYNISHVWLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS-LVDGDVVVV 449
             L+   I  + +   G +  AL  A     I     + +DG    +  +    GDVV+V
Sbjct: 420 AYLAERGIDRLIVVGHGVNQDALAAAGEDNGIRTRQVDDVDGAVNLLTGAPTHPGDVVLV 479

Query: 450 KSSNSCGFYRLINLL 464
           K+S S G +R+   L
Sbjct: 480 KASYSDGLWRVAERL 494


>gi|222112153|ref|YP_002554417.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase [Acidovorax
           ebreus TPSY]
 gi|221731597|gb|ACM34417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           ebreus TPSY]
          Length = 482

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 188/472 (39%), Gaps = 22/472 (4%)

Query: 2   NPLWTFHDL-----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +P+ T          +      IG      +  +  D+R++A  + F A+KG  +D H F
Sbjct: 8   SPMMTLQQAFDLLRARIPGARLIGEGA-TPLARVHTDTRTLAAGDLFVALKGERFDAHQF 66

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A               A +    +P   V D L AL  LA   R +    +IA+TGS
Sbjct: 67  LSQAR----TAGAAAAIAHAGLADAGLPGIEVPDTLAALGALATGWRAQRDLPLIAVTGS 122

Query: 117 VGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTT  +M+             A  G++NN +GVPLTL R+    +  + ELGM+H GE
Sbjct: 123 NGKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGE 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + RP +A++      HL     +E +A     +   L   GT      D+F  L
Sbjct: 183 IANLADIARPTVALVNNAQREHLEFMHTVEAVAHENGSVLSALPADGTAVFPAADAFTPL 242

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +      G +   +FG+    + +    +       + +     + +      G H   
Sbjct: 243 WRE---LAGTRHCLTFGE-AAGEVRCAAAQWGDGAWQVRIDTPNGAFDTRLAIAGRHNVT 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L            + +  + L+ F P  GR +           T++D+SYNANP S+ 
Sbjct: 299 NALAATACALAAGGPLASIARGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVH 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+ +     G R+ VLGDM E+G+    FH +      +  I  ++  G      
Sbjct: 359 AAIEVLAALP----GPRLLVLGDMGEVGDQGSQFHAEAGAHARVRGIEQLFALGDLSAHA 414

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             A   +    + + M  L   +  +L     V+VK S      +++  L  
Sbjct: 415 VQACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQA 464


>gi|74316133|ref|YP_313873.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055628|gb|AAZ96068.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 464

 Score =  212 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 136/467 (29%), Positives = 208/467 (44%), Gaps = 23/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +    +     G      V  ++ DSR++ P + F A++G  +DG  F   A+Q+
Sbjct: 7   MMRLSEAAAMLGVPLPG--ADAEVVRVTTDSRTLRPGDLFVALRGERFDGGAFAAQALQQ 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV++      +         VDD   AL +LA A R R    ++AITGS GKTT K
Sbjct: 65  GAAGVVLDRAQAPDLAQA----LRVDDTRLALGRLAQAWRQRFAIPLVAITGSNGKTTVK 120

Query: 124 EMLTIALS----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           EML   L              G+ NN IGVPL L R+     + + E+GM+H GEI +LT
Sbjct: 121 EMLAAILRVEAGDAAAVLHTEGNLNNDIGVPLMLLRLRDHHQYAVLEMGMNHAGEIDYLT 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L RP IA++     AH+     +E IA AK EIF GL   G    N DD    L +  +
Sbjct: 181 RLARPDIAIVNNALTAHIGFLGSVENIARAKGEIFNGLTDAGIAVFNADDPHAGLWREAN 240

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +          +A      ++     S + V L   ++++     G H   N L  
Sbjct: 241 RQRCVVDFGLV----HATSVRGDYRADEFGSALTVTLPNATLDIALQVPGEHNVMNALAA 296

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L     + +  L+ F   +GR    +        T+ID++YNANP S+KAA++V
Sbjct: 297 VAGAFALDVSHRSVVAGLAGFGGVKGR---LQRKAALHGSTVIDDTYNANPDSVKAALAV 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+Q      G++I VLGDM E+G+ + S H ++        +  +   G    A   A  
Sbjct: 354 LAQQP----GKKIFVLGDMGELGDDAASMHEEIGVAARAAGVGRLLALGDLSCATVAAFG 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + E ++ L   +++ L  G VV+VK S      R++    E
Sbjct: 410 TG--AMHFERIEELLAELENELAPGTVVLVKGSRFMQMERVVKSFTE 454


>gi|254491301|ref|ZP_05104481.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxidans DMS010]
 gi|224463430|gb|EEF79699.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Methylophaga thiooxydans DMS010]
          Length = 451

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/464 (28%), Positives = 209/464 (45%), Gaps = 19/464 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T + + + +   +I       V+G  +D+R I   + F A+KG H DGHD++  A
Sbjct: 1   MGLNLTLNQVAEIVACDAIY--ADIKVSGAVVDTRKIQAGDLFIALKGEHVDGHDYLAQA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            + GA   +V+      I   ++P   V DV  A   +A A + + KA ++AITGS GKT
Sbjct: 59  REAGAAAALVSE-----IQDDALPQLVVADVRKAFAHIARAWQQQCKARVVAITGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+T  L  +    A  G+ NN +GVPLTL+ +  D DF + E+G +H GEI  L +
Sbjct: 114 SVKEMVTTMLKQVGSVTATQGNLNNELGVPLTLSCLNQDDDFAVIEMGTNHHGEIAELVN 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V P IAVI  IA AHL+ F  +E +A  K  I++GL   G   +N D  +  L +    
Sbjct: 174 IVVPDIAVINNIAAAHLAGFGSLEGVAKEKGAIYDGLAANGIAVVNADMPYQRLWQ---P 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G +   SF     AD +    +     S   V +   S        G H   N L  +
Sbjct: 231 LIGDRKTISFSLESEADIKADYIQLDPASSHFLVNIDDVSHHFNLPLPGMHNVNNALAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   VD  +K LS+      R +  +   +     LID++YNANP S   A++ L
Sbjct: 291 AVAVALDIPVDAMVKGLSLMRSVPHRLQVRQGVND---SRLIDDTYNANPGSYLQALNTL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +      +G    VLGD  E+G  + + H  + +      +S +   G        +   
Sbjct: 348 TAF----QGEHWLVLGDFGELGIDNDNIHQQMGQQAREAGVSRLMTVGNSSKIAAHSF-- 401

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                + E +  L   +Q  L      ++K S      +L + L
Sbjct: 402 GDDAVHYEDLGVLQHTLQQELSKDVTCLIKGSRFMQLDKLADQL 445


>gi|327489499|gb|EGF21292.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1058]
          Length = 456

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A   GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +         P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +        +  +          +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLKQAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|222099424|ref|YP_002533992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571814|gb|ACM22626.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 427

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 179/442 (40%), Gaps = 23/442 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
               ++S+ +   + F A+KG  +DGHDFI  A+++GA  V+    +V S       +  
Sbjct: 7   RRFVLNSKEVKEGDVFVAVKGKRFDGHDFIDEALKRGAHAVIAERAVVHSD-----RIVL 61

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + +  L +LA      S  TII ITGS GKTTTKE+L   L   +  +   G+ N   
Sbjct: 62  VKNTVETLAELARLKLNDSPKTIIGITGSNGKTTTKEILYELLKRRRNVFKTPGNMNTEY 121

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL++       +  + E+  +  G+I  L  +  P +AV+  +  AHL  F   E I 
Sbjct: 122 GLPLSILNEYGGEEILVLEMAANKKGDIAHLCSIAPPDVAVLLNVGSAHLEFFKSRENIM 181

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI +  +K   +   +DD              +      G     D+   +    S
Sbjct: 182 EAKLEIVKHSKKDSAVVTFFDDGDLRKKVPVLRENVLFFGTKGGDVVLEDWWYYENSTIS 241

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           E            M      I      N    L + + L        K   +        
Sbjct: 242 E----------YRMFGSSFTIKLPGFWNRGQLLNLAASLCVMKVLGEKVDVLELSNLKAV 291

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                        +ID++YNA+P + + AI  L +      GR+ AV+G M E+GE S+ 
Sbjct: 292 PGRFNVKEVEGVRIIDDTYNASPEAFQMAIEALLKFP----GRKFAVVGAMKELGEESKK 347

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           FH  L + L   +  +V+ +      +K        V  +++ + +   + + +  GD V
Sbjct: 348 FHEMLGKQLDALDGVYVFSTEPEAGWIK----TRKKVLETDSAEEIARDLYTRVRKGDTV 403

Query: 448 VVKSSNSCGFYRLINLLLEEFP 469
           + K+S +    R++ +   E  
Sbjct: 404 LFKASRAVRIERVLEIFERELK 425


>gi|260911068|ref|ZP_05917704.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
 gi|260634872|gb|EEX52926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella sp. oral taxon 472 str. F0295]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 121/433 (27%), Positives = 191/433 (44%), Gaps = 21/433 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G   VVV+                VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCAFVVVDE--AEYCVQGDERYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  NVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGEKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K     F    K G +F++ ++     +      +   T        +            
Sbjct: 194 KGELYDFMRQSKRGKVFVDANNPHLMGIAEGLDLVKYGTPARPDLFVSGKVVSAAPFLR- 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              +   +  G   EV  H +G +   NML  + +   L    D A +AL+ + P   R 
Sbjct: 253 ---FAWQREGGAWNEVQTHLVGAYNVLNMLAAISVGLYLGVSADEANRALAHYVPSNNRS 309

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +    A N+    LI ++YNANP SM  A++    +       ++A+LGDM E+G +S+S
Sbjct: 310 QLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVP---HKMAILGDMLELGAVSES 362

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  +A+ LS   +  VWL G        A  +         ++ +   ++    +   +
Sbjct: 363 AHQAIADQLSQLALDEVWLVGPEFARTHCAFRK------FNDVEEVIAELKKHRPENHYI 416

Query: 448 VVKSSNSCGFYRL 460
           +VK SN     +L
Sbjct: 417 LVKGSNGIHLDKL 429


>gi|161526009|ref|YP_001581021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349274|ref|YP_001944902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
 gi|160343438|gb|ABX16524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189333296|dbj|BAG42366.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanine ligase [Burkholderia
           multivorans ATCC 17616]
          Length = 468

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAQAPAGIALPMIVGGETRAALGALAHGWRKRFALPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGAHARLATAGNLNNDVGLPLTLLRLAAAHRLAVIELGMNHRGETEI 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F    +      +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVTGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  R +       T++D++YNANP SM+AA
Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++       V+VK S      R+++ L  +
Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGADASVLVKGSRYMKMERVVDALTNQ 458


>gi|324995316|gb|EGC27228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK678]
          Length = 456

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/470 (26%), Positives = 201/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLQKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRTEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYTALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|329964640|ref|ZP_08301694.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
 gi|328525040|gb|EGF52092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteroides fluxus YIT 12057]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 194/435 (44%), Gaps = 17/435 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG +++G+ F   A++ G+   VV+    A  G        VD
Sbjct: 16  VTTDSRNCPEGSLFIALKGDNFNGNAFASKALENGSAYAVVDEAGYAPTG--DAHYIIVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  L +LA   R +    II ITG+ GKTTTKE+++  LS         G+ NN IGV
Sbjct: 74  NCLRTLQQLANFHRRQLGTRIIGITGTNGKTTTKELMSAVLSQSYHVLYTAGNLNNSIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + D  + E+G SH G+I+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PLTLLRLTTEHDLAVVEMGASHPGDIKELVEIAEPDYGIITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L +       +       L+  ++ L   T  S  +   +          +  
Sbjct: 194 KGELYDYLRRRKEGSTIFIHYDNPYLREIAYGLNQITYGSEEELYVSGRVTGNSPYLT-- 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +   +GK+ +V    IG +   N L  + I      +     KAL+ + P+  R + 
Sbjct: 252 FEWKAGKEGKTHQVQTQLIGEYNFPNALAAVTIGRFFGVEPAKIDKALAEYTPQNNRSQL 311

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R A N    TLI ++YNANP SM A+IS   ++       ++ +LGDM E+G+ S   H
Sbjct: 312 KRTADN----TLIIDAYNANPTSMMASISNFCKMEAA---HKMLILGDMRELGKDSAEEH 364

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L   +  HV L G    A + + P                 +Q +     ++++
Sbjct: 365 QKIIDYLEECHFEHVMLVGELFAATRHSYPAYADAAAV------IAELQKNKPTERMILI 418

Query: 450 KSSNSCGFYRLINLL 464
           K SN      +I  L
Sbjct: 419 KGSNGIKLSSVIEYL 433


>gi|315181134|gb|ADT88048.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Vibrio
           furnissii NCTC 11218]
          Length = 453

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 130/472 (27%), Positives = 211/472 (44%), Gaps = 24/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   L   +    +G      +  +S D+RSIA    F A+ G  +D H+F   A
Sbjct: 1   MIRL-SLSQLTTVLDAQLVGDDTD--IAAVSTDTRSIAQDALFVALVGERFDAHEFAAQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++V   +      +++P   V +   AL +L      +     +AITGS GKT
Sbjct: 58  VAAGAKALLVERAL-----DVNVPQLVVSNTKTALGQLGCWVHQQCHTPTVAITGSCGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   LS+  +     G++NN IGVPLTL R     D+ + ELG +H+GEI +   
Sbjct: 113 TVKEMVASILSAKGQVLFTAGNFNNDIGVPLTLLRSTPQDDYAVIELGANHIGEIAYTVG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P +A++  +A AHL  F  I+ +  AK EI++GL    T  +N D     L ++   
Sbjct: 173 LVKPDVALVNNVAAAHLEGFGSIDGVKRAKGEIYQGLSAGNTAVVNLDSQGGALWQS-VL 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      +S  +     +        + ++   +      + V    IG H   N L   
Sbjct: 232 ADKSVKTFSVTEHSADFYPRDIVLNAAGEASFVLVTPIGDVAVKLGIIGKHNVGNALAAS 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   + A +      L+     +GR             TLID+SYNA+  +MKAA+ +L
Sbjct: 292 ALAIEMGATLADIQHGLAHLSKVKGRVDVTEL---TDHITLIDDSYNASVPAMKAAVDLL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
              S      R  +LG+M E+GE S + H  + E  + +   +V   G     + D    
Sbjct: 349 GGFSA----TRWLILGNMAELGEESLALHQQVGEHAAPFQFDYVLTYGHDAKVISDV--- 401

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDG--DVVVVKSSNSCGFYRLINLLLEEF 468
             H  +  +   + +FI+  L        V++VK +NS G  +++  L E++
Sbjct: 402 -CHGRHFASHQDMIMFIEQHLEQQPDRTHVLIVKGANSAGMSKIVAALKEKY 452


>gi|189502568|ref|YP_001958285.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498009|gb|ACE06556.1| hypothetical protein Aasi_1231 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 433

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 116/435 (26%), Positives = 187/435 (42%), Gaps = 22/435 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR       FFA+KG   DG+ F   A+ KGA   V++                V+
Sbjct: 21  VSFDSRKDVANTIFFALKGACCDGNIFASQALAKGAAYAVIDNPRYYQEDE---RYLLVN 77

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R +    IIAITGS GKTTTKE++   LS     YA  G++NNHIGV
Sbjct: 78  DTLETLQQLAKLHRSQLNIPIIAITGSNGKTTTKELIYAVLSQRYNCYATSGNFNNHIGV 137

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P++L  +    +  + E+G +H+GEI  L  +V+P   +IT I+ AHL  F GI  +   
Sbjct: 138 PISLLSIKKSTEMAVIEMGANHIGEIAQLCEIVQPTHGLITNISHAHLEGFGGINGVIKG 197

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+                     + +    L                    + +  E 
Sbjct: 198 KSEL---------YTYLKQHGGVPFINSADSVLLNVANGFVNPIYYPQKGDYYYCELKEA 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   V    +S  V    IG H   N+   L I      + +    A+  ++P   R + 
Sbjct: 249 NPYLVYTSEQSTTVTTQLIGKHHFHNVAAALCIGKYFGIEPNMVNTAIQAYNPSNNRTQL 308

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N    +++ ++YNANPAS++AA+   S +    +   + +L DM E+GE S +FH
Sbjct: 309 IKKGTN----SILLDAYNANPASVQAALESFSFLKSMYK---VLILADMNELGEESLAFH 361

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + E  +  +   + L G  +     A   +    Y + +  L  ++ +        ++
Sbjct: 362 QAIIEKTAQQDYDAILLHGPVME---KACLYNPKAIYFKQISNLQEYLSNHKFSNTAFLL 418

Query: 450 KSSNSCGFYRLINLL 464
           K S S     L+N +
Sbjct: 419 KGSRSYHLESLLNFI 433


>gi|327458729|gb|EGF05077.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK1057]
          Length = 456

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 125/470 (26%), Positives = 200/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I P + F  +KG   DGHDFI  A   GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVVLRNAEFDSRLIEPDDLFVPLKGAR-DGHDFIATAFAHGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              + +  +         P   VDDVL A   LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSDHPVAEG------PYLLVDDVLTAFQCLAQYYLEKRQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADYKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +        +  +          +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTCLEERKDSLSFDCNFLEKRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSEVAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NPGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            VHY       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVREKLTPADQILLKGSNSMNLAKLVEDLED 454


>gi|260434510|ref|ZP_05788480.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
 gi|260412384|gb|EEX05680.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Synechococcus sp. WH 8109]
          Length = 459

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 183/468 (39%), Gaps = 16/468 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    T   LL A  G   G    P   V  +  DSR +   + F  + G  +DGH F+ 
Sbjct: 1   MT--LTLRQLLAAW-GTPQGSSFEPDALVGRVCTDSRQLQAGDFFVPLVGERFDGHHFLD 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              +      VV+        S  +  + VDD L A  +LA+  R      ++A+TGS G
Sbjct: 58  KLTEHKVQAAVVSRSWTEPFPS-GLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+E++  AL+ +    A   + NN +GVPLT+          + E+GM   GEI  L
Sbjct: 117 KTTTRELIRAALAPMGAIQASEANNNNDVGVPLTVLGATAADAALVIEMGMRGSGEIERL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +    P +AVIT I  AH+      E IA+AK EI  GL   GT+ +   D   E   A 
Sbjct: 177 SRCTEPDLAVITNIGTAHIGCLGSREAIAAAKCEITAGLHPKGTVVIPAGDPLLESALAA 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +  +  +            +      ++        Q                    +
Sbjct: 237 VWSGRVLRVRLADDPVVESDLINADWIGADLVGDINGDQLLIDADRLPLQLEGRHNARNL 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +       V              GR +R +        TL+DE+YN    +   A+ 
Sbjct: 297 LLAVAVADQLGVSRKQLQGMQVTVPGGRNRRLQQGG----LTLLDETYN----ASPEAVL 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416
              ++     GRR AVLG M E+GE S   H ++A       +  + L   G    A+ +
Sbjct: 349 AALELLAAQPGRRFAVLGTMLELGERSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAE 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 H+      +   + + + L  GDV+++K+S      RLI LL
Sbjct: 409 VAAPLPHLQLVSNPEDAAVPLAAWLNSGDVLLLKASRGVALERLIPLL 456


>gi|325676973|ref|ZP_08156645.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552273|gb|EGD21963.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus equi ATCC 33707]
          Length = 506

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 134/496 (27%), Positives = 200/496 (40%), Gaps = 34/496 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + QA+ G       P   V+G +  DSR I     F A+ G   DGHD   
Sbjct: 1   MIPM-TLAQIAQAVGGTLHDVDDPSATVSGTVEFDSRKITSGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDD---VLGALNKLAVAARL 104
            AV             G   +VV     +  G+L++          VL AL KLA A+  
Sbjct: 60  GAVAAGAVAVLAARPVGVPAIVVEPLGASGNGALALEHDRDGSGAAVLAALGKLARASVD 119

Query: 105 R----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           R    S  T++ +TGS GKT+TK++L   LS +    A  GS+NN +G P T  R   D 
Sbjct: 120 RLTTESGLTVVGVTGSSGKTSTKDLLAAVLSPLGSVVAPPGSFNNELGHPWTALRADADT 179

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            F + E+     G I  L  +  P I V+  +  AHL  F   E IA  K E+   L   
Sbjct: 180 RFLVLEMSARGRGHIAALAEIAPPRIGVVLNVGTAHLGEFGSREAIAETKGELPASLPSA 239

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGK 279
                    +  + L A         +   G S NAD +    +   + ++   +     
Sbjct: 240 ADG-GVAVLNADDPLVAAMADRTEARVVMVGLSGNADVRATDVRLDDQARASFTLTCAAG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++ V     G H   N L    +     A +D    AL    P   R    R   +    
Sbjct: 299 AVPVTLAVHGEHHVGNALAAAAVALECGATLDQIAAALGGAAPVSARRMEVRDRSDGV-- 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGELSQSFHIDLAEVL 396
           T++++SYNANP SM+AAI  L  ++  G G      AVLG+M E+G  S   H  +    
Sbjct: 357 TVVNDSYNANPDSMRAAIKALVSMARSGRGPARRTWAVLGEMAELGPESVVEHDAIGRFA 416

Query: 397 SLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              +++ + L G    V A+               +          ++  L  GD+V+VK
Sbjct: 417 VRLDVTKLILVGPGRPVRAMYQGAVMEGSWGDEAIHVPDGASAIALLEQELRAGDLVLVK 476

Query: 451 SSNSCGFYRLINLLLE 466
           +S S G + + + +L 
Sbjct: 477 ASQSIGLWEVADAVLA 492


>gi|332527091|ref|ZP_08403171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111522|gb|EGJ11504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rubrivivax
           benzoatilyticus JA2]
          Length = 448

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 123/463 (26%), Positives = 191/463 (41%), Gaps = 23/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T    L  + G ++          +  D+R++ P + F A++G  +DGH+F+  A + GA
Sbjct: 4   TLAQALPFVPGATLVGEGTTAFARVHTDTRTLQPGDLFVALRGERFDGHEFLASAREAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +  +     +P   V D L AL +LA   R R    ++A+TGS GKTT  +M
Sbjct: 64  VAAIAEHGLSDA-----LPGLQVPDALAALQQLAAGWRARFTLPLVAVTGSNGKTTVTQM 118

Query: 126 LTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +   L +      +A  G+ NNHIGVPLTL  +      G+ ELGM+H GEI  L  + R
Sbjct: 119 VAAILRAAHGDAAFATRGNLNNHIGVPLTLLGLEPAHAAGVVELGMNHPGEIAELAAIAR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++      H    + +E +A    +    L   G      DD +  L +  + A  
Sbjct: 179 PTIALVNNAQREHQEFMATVEAVARENGQAIAMLPPDGVAVFPADDDYTPLWRELAGARR 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T    G +              ++  +E+      +       G H  +N L      
Sbjct: 239 TITFALDGAADLTARATW----QGDRWRVEMATPAGPLVTTLAVAGRHNVKNALAAAACA 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                        L+ F P  GR +  R A   G  TL+D+SYNANP S  AA++VL+ +
Sbjct: 295 LAAGVAPAAIAAGLTAFQPVAGRSQAARLATAHGEITLVDDSYNANPDSALAAVAVLAAL 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G R  VLGDM E+GE    FH ++        I  VW +G     +         
Sbjct: 355 P----GPRWLVLGDMGEVGERGPEFHAEVGAAARAAGIETVWTAGTLSRHVGAD------ 404

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             + +    L   +  +      V+VK S      +++  L E
Sbjct: 405 -RHFDNTPALVAALADAPQAAS-VLVKGSRFMRMEQVVRALKE 445


>gi|198274199|ref|ZP_03206731.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
 gi|198272874|gb|EDY97143.1| hypothetical protein BACPLE_00339 [Bacteroides plebeius DSM 17135]
          Length = 430

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 120/436 (27%), Positives = 191/436 (43%), Gaps = 20/436 (4%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              NG++ DSR       F A+KG  ++G+ F   ++ +G    VV+    AS  +  I 
Sbjct: 11  TECNGLTTDSRHCPEGSMFLALKGETFNGNAFAAQSLAQGCRYAVVDEPQYASPENPYI- 69

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V++ L  L +LA   R +    ++ +TG+ GKTTTKE++   L          G++N
Sbjct: 70  -LLVENCLQTLQQLANYHRRKLGTRMVGVTGTNGKTTTKELIAAVLKEKFNVLYTQGNFN 128

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIGVPLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E
Sbjct: 129 NHIGVPLTLLRLKPEHEVAVIEMGANHPGEIKTLVHIAEPDCGIITNVGKAHLEGFGSFE 188

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +   K E+++ L + G   +   +    L K       ++   + G   +         
Sbjct: 189 GVIRTKGELYDYLREKGNATIFIQNENPHLNKIAEGLNCVRYGQTSGLDVSGTVLSCSPF 248

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                        G S EV  H IG +   N L  + I      +      ALS + P+ 
Sbjct: 249 LHLG-----WTAGGASHEVKTHLIGAYNLDNALAAVAIGRYFGVEDTQICHALSSYVPQN 303

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   N    TLI ++YNANP SM AA+    Q+       ++A+LGDM E+GE 
Sbjct: 304 NRSQLVQTESN----TLIVDAYNANPTSMMAALVNFRQMEAE---HKVAILGDMKELGEG 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S+  H  + + L+      V L G     L  +        + E +  +   + +  V  
Sbjct: 357 SREEHQKVVDFLNECQFERVILVGPEFAGLSASF------EHYENVKEVEAMLAAHPVQH 410

Query: 445 DVVVVKSSNSCGFYRL 460
             V++K SNS     L
Sbjct: 411 CCVLIKGSNSMKLSEL 426


>gi|285019577|ref|YP_003377288.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474795|emb|CBA17294.1| probable udp-n-acetylmuramoyl-tripeptide-d-alanyl-d-alanine ligase
           protein [Xanthomonas albilineans]
          Length = 501

 Score =  211 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 118/501 (23%), Positives = 192/501 (38%), Gaps = 57/501 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +         G      ++ IS D+R +A    + A++G  +DGH F   A  +GA 
Sbjct: 6   LSMIAHWADADLHGD--DVAIDAISQDTRRLAAGSLYVALRGERFDGHTFAADAAMRGAS 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++V       +  + +P   V D   AL ++A   +      + AITGS GKT+ K +L
Sbjct: 64  ALLVERR----LPQIELPQIVVADTQLALARIAAGMQRGRATRVAAITGSNGKTSVKALL 119

Query: 127 TIALSSIKK-----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
              L    +      YA  G++NN IG+PL +   P D D+ I+E+G    G+I +LT +
Sbjct: 120 LAILQYACRLDGGSVYANPGNHNNEIGLPLAVIAAPDDADYAIYEMGAGKPGDIAYLTDI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P ++++  IAPAHL     +  +A  K  I+  L   GT  +N DD+F    + +  A
Sbjct: 180 APPRVSLVNNIAPAHLERMGSLLGVAQTKGAIYAALPADGTAVINIDDAFGLWFEQQLSA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    A     + +  ++++   +       E      G H   N L    
Sbjct: 240 ASRPRVLRFGLQHGAHVTATRIRMAADRTHFVLLTPQGEAETTLPLPGRHNLLNALAAAA 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L          L+   P  GR   +          LID+SYNANP S+ AAI    
Sbjct: 300 LALALDVAPARIAAGLAQVQPVPGRQISHTLPGG---AVLIDDSYNANPGSLAAAIDA-- 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G R  VLGDM E+G  +++ H           ++ ++  G        A   +
Sbjct: 355 --LAAIGGERWLVLGDMRELGAGAEALHASGGSRARAAGLTRLYALGPLSAHAAQAFGDN 412

Query: 422 IHVHYSETMDGLFLFIQSSLV-----------------------DGD------------- 445
             V   ++   L   +Q  L                          D             
Sbjct: 413 GRV--FDSHATLVEALQRDLAAVVAREKQDQKQETELMHDKTGVPSDGALPRVPGPGSRI 470

Query: 446 -VVVVKSSNSCGFYRLINLLL 465
             ++VK S      ++++ LL
Sbjct: 471 PTLLVKGSRGSAMDKVVSALL 491


>gi|239917865|ref|YP_002957423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413641|ref|ZP_06245383.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839072|gb|ACS30869.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus NCTC 2665]
          Length = 504

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 138/493 (27%), Positives = 202/493 (40%), Gaps = 34/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +A+ G       P   +  ++ DSR +      + A  G   DGHDFI 
Sbjct: 1   MIAL-TAAQIAEAVSGTLSATLDPATVLVHVTPDSREVTAEGTLYVAKPGERADGHDFID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAIT 114
            A+  GA  V+      A  G+   P   V+D + A+  LA       R  S  T+I IT
Sbjct: 60  TALGAGAAAVLAERATHAPDGAA-HPAIIVEDAVLAMGALAREVVRRVREHSPTTVIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L++   T A +GSYN  +GVPLT+ R  +D  F + E+G  H+G 
Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRFLVVEMGADHVGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +L  +VRP I V+  +  AH  +F G+  IA  K E+ E L   G   LN DD     
Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238

Query: 235 LKAKSHALGIKTI----------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + A++ A                       + G     D +    ++      +      
Sbjct: 239 MAARTAAPITWFTADERGVTRAAEDVAAGRASGLVAARDVRSDDQERPVFDLQVGTDEAA 298

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V     G H   N+L           D     + L    P      R         
Sbjct: 299 VRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGP--ASRFRMERTDRADG 356

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+I+++YNANP SM+AA+  L+ +      R  AVLG+M E+G+     H  + E +  
Sbjct: 357 VTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVR 416

Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            NI+ + + G     L              H+ +       F+   L  GD+V+VKSSN 
Sbjct: 417 LNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLAEHLRPGDLVLVKSSNG 476

Query: 455 CGF----YRLINL 463
            G      RL   
Sbjct: 477 VGLAALGERLATA 489


>gi|319778488|ref|YP_004129401.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
 gi|317108512|gb|ADU91258.1| Murein precusor biosynthesis bifunctional like-protein [Taylorella
           equigenitalis MCE9]
          Length = 909

 Score =  211 bits (536), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 115/441 (26%), Positives = 194/441 (43%), Gaps = 27/441 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR++   E F AIKG ++DGHDF+   +       +V+           +  F VD
Sbjct: 493 INTDSRTLKSDEIFLAIKGENFDGHDFLET-ID--CIGAIVSKP----NPKAKVRQFIVD 545

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNH 146
           D   A+  +A A R +    +IA+ GS GKTT KEM+   L S       +A  G+ NNH
Sbjct: 546 DTTLAMGTIAKAWRSQFDIPVIAVCGSNGKTTCKEMIASILKSYAGDGAYFATRGNLNNH 605

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGVP +L  +  +    +FELGM+H GEI +L+ L +P IAV+T     H      +E +
Sbjct: 606 IGVPKSLLSLTDNHRIAVFELGMNHPGEIEYLSGLAKPTIAVVTNAQREHQEFMKSVEAV 665

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A     +F+ L+  G         +  +   +          +FG++ + +         
Sbjct: 666 ARENGSVFQSLDADGVAIYPRSSPYSYIWDEQ---SRHCKSITFGEAGSVNAT--NISYD 720

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SE S   V ++ + + +    +G H  QN L  +        D       L+ F   +GR
Sbjct: 721 SEGSSFTVDVESEKLNIHLSILGDHNIQNALAAIATTLSAGIDKKYIESGLAEFKAVKGR 780

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +++          ++D++YNANP S+ AAI +L  ++      R  VLGDM E+G    
Sbjct: 781 LQKHILKDG---TVILDDTYNANPDSVIAAIDILKTLAT----PRTLVLGDMGEVGVDGV 833

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H ++        I ++   G      ++    +    +  + D L  F+ S L    +
Sbjct: 834 QMHEEIGTYARENGIDNLLTLGELTKFAQEKFGDN---THFNSHDELAKFLIS-LHSKSI 889

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           + +K S      +++  L ++
Sbjct: 890 I-IKGSRFMKMEKVLEALTKD 909



 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 167/449 (37%), Gaps = 38/449 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + F A KG   DG +F+  A++ GA  +++  ++   +  L  PV  V ++ 
Sbjct: 21  DSRDIQKGDVFVACKGHKGDGKEFLTDAIENGASAILIEDNLDIVV--LQTPVLVVKNLR 78

Query: 93  GALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGS------YN 144
             L +LA A      +   +IA+TG+ GKT+    ++ AL+SI    A IG+        
Sbjct: 79  QKLGELADAWYGSPSSKIAVIALTGTNGKTSCAHWISKALNSINIPCATIGTLGTILPSG 138

Query: 145 NHIGVPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            ++G  LT   +                I  +  S +G  +     V+  IA  T +   
Sbjct: 139 ENLGGSLTTPDVLSVHRILATLVARGIEIVTIEASSIGIEQGRLDSVQIKIAGFTNLTLD 198

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++E   AK  +F        IF   D +   + +    +  +   YS   +  
Sbjct: 199 HLDYHKSMQEYEEAKTSLFLRDGLECAIFNLDDMAGVRMYEKSKASRNL--GYSILSNSK 256

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A     + +         +QL     +V+    G H   N+L+  G++S L   V+  ++
Sbjct: 257 AVITASELEFHDYGLSFNIQLPEGKSQVITRLAGRHNIYNLLLVAGVLSHLNVSVEKIVE 316

Query: 316 ALSVFHPKEGR----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            ++   P  GR      +   +        +   Y+  P ++  AI  L  +     G+ 
Sbjct: 317 IIATIRPVPGRLKLVDIQPFSSSRLINLPHVYVDYSHTPDALANAIKALEVVKNIRGGKM 376

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVHY 426
             V G     G         +   ++      ++++       +   + + + +    + 
Sbjct: 377 ACVFG----CGGDRDKTKRPVMAKVASECADDIYITSDNPRTENASDILNDILKGAKKYS 432

Query: 427 SETMDGLFLFIQSSLV--DGDVVVV--KS 451
              +D  +  + + L     D +++  K 
Sbjct: 433 FSHIDRAYTILHAILNASKNDTILIAGKG 461


>gi|260891634|ref|ZP_05902897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
 gi|260858644|gb|EEX73144.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia hofstadii F0254]
          Length = 464

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 112/462 (24%), Positives = 190/462 (41%), Gaps = 31/462 (6%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    +N ISI+S+ +   + F AI+G    G++F+  A++KGA   V ++  +     
Sbjct: 15  EISDLEINNISINSKELGKNDIFVAIRG----GNNFVNEALEKGA-FAVYDSKTLKIDEK 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +   F V+D +  L   A   R      +I ITGS GKTT K+M+   LS   K     
Sbjct: 70  YANRAFFVNDSIEFLQNFAREWRKNLDIKVIGITGSNGKTTVKDMIYHLLSQKYKGKKTE 129

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YNNHIG+P TL R   D  F I E+GMS  GEI  L  +  P I VIT I  +HL   
Sbjct: 130 GNYNNHIGLPFTLLRAEEDDKFIILEMGMSGFGEIDLLGQIALPDINVITNIGESHLEFL 189

Query: 201 SGIEEIASAKAEIFEGLEK------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
              E +  AK EI   ++             N      E++KA +         +     
Sbjct: 190 KTKENVFLAKTEIIPYIKNTLVINGDDDYLKNVKAENIEVVKALNLGSNEFREKTSDFYY 249

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                         + + ++           + +G H   N++M + +      +     
Sbjct: 250 GDVHFNESGTDFFLKYFGKICQSTVERNYKTNVLGEHNVLNLVMAIAVAKQFGMEDKIIS 309

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +A+        R       +  G  T I+++YNA+P SM+ ++   SQI  + +  +I V
Sbjct: 310 EAVKNIGLTGMRF----QIIENGDTTYINDAYNASPMSMEKSLETFSQI--YNDRLKIMV 363

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-------------RS 421
           LGDM E+GE     H +L   +       ++L G  + +L + +              ++
Sbjct: 364 LGDMLELGENELELHSNLFNTIKNTKFDKLYLFGERMKSLFEKIKENVDNENLENENLKN 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               + +  + +   I+    +   V++K+S       +I  
Sbjct: 424 KEFGHFDQKEEIKEKIRQISGEK-AVLLKASRGMRLEEIIEK 464


>gi|33862674|ref|NP_894234.1| cytoplasmic peptidoglycan synthetase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634590|emb|CAE20576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9313]
          Length = 465

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 119/466 (25%), Positives = 201/466 (43%), Gaps = 13/466 (2%)

Query: 7   FHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              L++        H+  +     V  I  DSR ++    F  + G H++GH F+  A++
Sbjct: 5   LGQLVEFWGAPMHVHASDLDLDQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALK 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                 VV       +    +P + V+D L A  +L +  R +    ++A+TGS GKTTT
Sbjct: 65  LEVQAAVVARKDHHPVPE-GLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++  AL+ + +  A  G+ NN +GVPLTL +   D    + E+GM  +GEI  L+   
Sbjct: 124 RELIRSALTPLGEVLASAGNNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCT 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +AVIT I  AH+        IASAK EI   L+  G I +   D   E    +    
Sbjct: 184 QPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPRGVIVIPAGDLLLEDALERIWRG 243

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  +      +    +      +   +   +      K   ++         + M    
Sbjct: 244 RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGNAYTLPLEGMHNAC 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    +  +   S+ + K          L  G FT++DE+YNA+P +++AA+ +L
Sbjct: 304 NLMLALAVARELDVCKESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQAALELL 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       GR  AVLG M E+G+ S + H  +AE      +  + +      A   A   
Sbjct: 364 AIQP----GRHFAVLGTMLELGDQSVALHRQVAERAVQVGLDGLVVVAAGAEAEAMATAA 419

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               H+      +     +Q+ L  GDVV++K+S      +LI LL
Sbjct: 420 GSLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|225021922|ref|ZP_03711114.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945309|gb|EEG26518.1| hypothetical protein CORMATOL_01954 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 496

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 113/502 (22%), Positives = 181/502 (36%), Gaps = 47/502 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L    ++   + G          + G +  DSR +A  + F A+ G   DGHD+   
Sbjct: 1   MITL-RLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAT 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVD--------------DV-------LGALNKL 98
           A+ +GA  V+           + +P   V               D        L  + KL
Sbjct: 60  AMDQGAAGVLAARP-------VGVPAVIVPPATEVDHHSYATEHDTDGSVAAVLEGMAKL 112

Query: 99  AVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           A     +      T+I ITGS GKT+TK+++   L     T A  GS+NN IG P T  R
Sbjct: 113 ARHVVDKLSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALR 172

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 + + E+    +G I  L  +  PHI V+  +  AH+  F   + IA AK E+ E
Sbjct: 173 CTETTKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARAKGELVE 232

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV- 274
            L   G   LN DD +   +  ++ A    T++SF              +    S     
Sbjct: 233 ALPADGIAVLNADDDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFT 288

Query: 275 ------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                 Q    + +V     G H   N L           D  T  + L     +     
Sbjct: 289 LIGTDSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAHRM 348

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               A N         + N            L+        R IAVLG M E+G+ + + 
Sbjct: 349 DVHHAGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATAD 408

Query: 389 HIDLAEVLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           H++L   ++   I  V + G        +  A    +    +         +   L  GD
Sbjct: 409 HVELMRTVAEQGIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGD 468

Query: 446 VVVVKSSNSCGFYRLINLLLEE 467
           V++VK+SN+   +++   ++ +
Sbjct: 469 VILVKASNAYRLWQVAEAVVAQ 490


>gi|332877391|ref|ZP_08445139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684774|gb|EGJ57623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 432

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 123/435 (28%), Positives = 193/435 (44%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A+ G        V+
Sbjct: 16  VTTDSRKCPQGALFFALKGNSFNGNAFAAQALEQGCAYAIVDEAEYAAGGDE--RYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLTALQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTAAVLSKKHNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  D    + E G +HLGEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELSPDHTIAVIETGANHLGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L                    +      +  Y     +    +    +     
Sbjct: 194 KGELYDYLRAKHGTV---FIDHDSEDLKRIAGGVHQICYGSPCDEVLSVEGEVLECAPFL 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +      G+  EV    IG +  QNML    I      +VD+  +AL+ + PK  R + 
Sbjct: 251 KFRWRPAGGEWQEVQTGLIGAYNMQNMLAAATIGRTFGVEVDSINRALAAYEPKNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    L+ ++YNANP SM+AAI     +       R+ +LGDM E+GE S   H
Sbjct: 311 METDDNK----LLVDAYNANPTSMRAAIENFRDMKVER---RMVILGDMGELGESSWKAH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A++L      HVWL G    A +            ++++ +   ++     G  +++
Sbjct: 364 QAIADLLVESGFEHVWLVGPKFKAARH------PFRTFDSVEQVKKALEIKKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K S+S   Y L + L
Sbjct: 418 KGSHSTRLYDLPDFL 432


>gi|227539119|ref|ZP_03969168.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300770625|ref|ZP_07080504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|227241020|gb|EEI91035.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|300763101|gb|EFK59918.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 433

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 193/437 (44%), Gaps = 21/437 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S D+R+I P   FFA+KG +++G+ F   A+Q GA  V+++    A  G        VD
Sbjct: 16  VSTDTRNILPGSLFFALKGANFNGNSFADQALQTGASYVIIDEASYAKDG----RYILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L KLA   R      +I +TG+ GKTTTKE+L   LS   KTYA  G+ NNHIGV
Sbjct: 72  NVLESLQKLANHHRKTLSIPVIGVTGTNGKTTTKELLHATLSQKFKTYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +   +   + E+G +HL EI FL  +  P   +I+ +  AHL  F   E +   
Sbjct: 132 PLTLLSVDSTIQIAVIEMGANHLKEIAFLCDIAEPTHGLISNVGKAHLEGFGSFEGVKKT 191

Query: 210 KAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS- 267
           K E+++ L+          D+     + A      I  + ++G ++  D   +  K    
Sbjct: 192 KGELYDYLQNHNGTLFLQADNPHLNEMAA---TRKISEVVTYGFAETNDVIGKLLKADPL 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            Q   + + +  S  V     G +  +N L  + +        +     +  + PK  R 
Sbjct: 249 LQIEWKEKDKPDSYTVHTQLTGSYNTENFLAAIAVGLYFGVSAEQINTGIERYTPKNNRS 308

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                       T+I + YNAN +SM AA+  +  I    +   + +LGDM EMG+ S +
Sbjct: 309 ----QVTKTEHNTIIADYYNANASSMAAALDNIEVIDASRK---VIILGDMFEMGDESDA 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + +         +   G             +   + ET +     +    V    +
Sbjct: 362 EHEKVVQRAKSIGADRLIFVGKAFKK-----QAYLEAEFYETSEEAKQALIDRPVINSTI 416

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K+S    F  L+++L
Sbjct: 417 LLKASRGMAFEHLMDVL 433


>gi|150004319|ref|YP_001299063.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides vulgatus ATCC 8482]
 gi|149932743|gb|ABR39441.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides vulgatus ATCC 8482]
          Length = 821

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 187/463 (40%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T      SK  + +    +   + +                 I +    ++  +L  +
Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGAHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    + +  +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|325298878|ref|YP_004258795.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
 gi|324318431|gb|ADY36322.1| Alanine racemase [Bacteroides salanitronis DSM 18170]
          Length = 823

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 115/462 (24%), Positives = 201/462 (43%), Gaps = 11/462 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  +++  +    IG   Q  ++ I  DSRS+    +  FFA+K    DGH +I     +
Sbjct: 4   SIEEIVSVVGATRIGER-QASISWILTDSRSLCFPEETLFFALKAKRNDGHKYIPELYAR 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV            +    V +VL AL +LA   R + +  +I ITGS GKT  K
Sbjct: 63  GVYNFVVAEVPEEMKNCTDVNFLVVGNVLKALQRLAGKHREQYQVPVIGITGSNGKTVVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  K+      SYN+ IGVPL++  M    + GIFE G+S +GE+  L  ++R
Sbjct: 123 EWLYQLLSPDKRIIRSPRSYNSQIGVPLSVWMMDEHTELGIFEAGISEMGEMETLEPIIR 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NFS +++    K  +F   ++   I  N D+       +KS    
Sbjct: 183 PTIGVLTNIGGAHQENFSSLQDKCMEKLLLF---KECDVIVYNGDNELIRDCVSKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       + K ++ +  + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSM-KDPERPLFIEKIEKDAAGTTIKYRYLGFFKEFRIPYIDDASIENSLHCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + ++   P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVPTEVIAERMAHLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     RR  +L D+ E G+  +  +  +AE++    +  +   G  + A          
Sbjct: 356 SEDKARRRTLILSDILETGQPGKLLYRQVAELVHSRGVDRLIGVGEEISASSSRFDVKEK 415

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  T + +   +  +L   D+V++K + +  F  + + L 
Sbjct: 416 QFFLTTEELMASGVLETLR-NDIVLIKGARAFHFDAVSDFLE 456


>gi|307690762|ref|ZP_07633208.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium cellulovorans 743B]
          Length = 395

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 189/405 (46%), Gaps = 15/405 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A +G+ I   P+   N +SID+R +     + AIKG ++DG+DF++ A+ KGA
Sbjct: 5   TLEEVLKATEGNLIINGPKTSFNLVSIDTRKLEKGCIYIAIKGENFDGNDFVVEAINKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            L +++         L+      V++   AL +LA   R +    +I +TGS GKT+TK+
Sbjct: 65  ELCIIDKIAYTEAEVLNKSAIVLVENTKKALMQLAKYYRNKLDIKVIGVTGSTGKTSTKD 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++  ALS   K +   G++NN IG+PL +  +    D  + E+GMS L EI+ L+ + RP
Sbjct: 125 LIAAALSEKLKVFKTKGNFNNEIGLPLMIFNLDNTYDVAVLEMGMSDLFEIQRLSDVARP 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + VIT I  +H+ N    E I  AK EI     K   + +N+DD +   +    + L  
Sbjct: 185 DLGVITNIGISHIENLKTRENILKAKMEITTYFGKENLLIVNHDDQYLSTIDKAEYRL-- 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S    KN D +        +      + +    +      G H   N L+ +    
Sbjct: 243 -IKASISDDKNIDLKGESLVLKEDS----CEFKLNESKFYIPMPGKHNISNALLAIACAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +     K          R    +        T+I+++YNA+P SMKAAI V+  + 
Sbjct: 298 ELGVEDQLINKGFLNIEATSMRLDIEKNKG----ITIINDTYNASPDSMKAAIEVMKNLK 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                 RIAV+G M E+GE S  +H ++       ++  +   G 
Sbjct: 354 GKR---RIAVVGTMKELGENSFEYHKEMGIFAKENSVDILIAIGE 395


>gi|124023586|ref|YP_001017893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123963872|gb|ABM78628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9303]
          Length = 465

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 121/466 (25%), Positives = 203/466 (43%), Gaps = 13/466 (2%)

Query: 7   FHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              L++        H+  +     V  I  DSR ++    F  + G H++GH F+  A++
Sbjct: 5   LGQLIELWGAPMHVHASDLDLDQAVGPICTDSRQLSEGSFFVPLVGEHFNGHAFLAQALK 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             A   VV       +    +P + V+D L A  +L +  R +    ++A+TGS GKTTT
Sbjct: 65  LEAQAAVVARKDHHPVPE-GLPHWIVEDTLEAYQQLGLLHRRQLNVPVVAVTGSAGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++  AL+ + +  A  G+ NN +GVPLTL +   D    + E+GM  +GEI  L+   
Sbjct: 124 RELIRSALTPLGEVLASAGNNNNDVGVPLTLLQAHSDHGAVVVEMGMRGIGEIERLSCCT 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +AVIT I  AH+        IASAK EI   L+  G I +   DS  E    +    
Sbjct: 184 QPDVAVITNIGNAHVGRLGSRAAIASAKCEITTCLKPRGVIVIPAGDSLLEDALERIWRG 243

Query: 243 GIKTIYSFGKSK--NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  +      +    +      +   +   +      K   ++         + M    
Sbjct: 244 RVIRVAVQDNQQLEPPEIADLHRRPLPKADLVGCVDLAKGELLLEGKAYTLPLEGMHNAC 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    +  +   S+ + K          L  G FT++DE+YNA+P +++AA+ +L
Sbjct: 304 NLMLALAVARELDVCNESLSNLKVDVPGGRSRRLKVGNFTVLDETYNASPEAVQAALELL 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       GR  AVLG M E+G+ S + H  +AE      +  + +      A   A   
Sbjct: 364 AIQP----GRHFAVLGTMLELGDQSVALHRQVAERAVQIGLDGLVVVAAGAEAEAMATAA 419

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               H+      +     +Q+ L  GDVV++K+S      +LI LL
Sbjct: 420 ESLPHLAVVANPEQAAQPLQAWLEAGDVVLLKASRGVALEKLIPLL 465


>gi|76798437|ref|ZP_00780676.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
 gi|76586199|gb|EAO62718.1| D-Ala-D-Ala adding enzyme [Streptococcus agalactiae 18RS21]
          Length = 430

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 117/448 (26%), Positives = 195/448 (43%), Gaps = 30/448 (6%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            + H++ + +   + +       +  I  DSR+I+  + F  +KG   DGH+FI  A   
Sbjct: 3   LSLHEVAKVVGAKNQVSEFEDVPLGNIEFDSRNISEGDLFLPLKGAR-DGHEFIEMAFDN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++         P   V D L A   LA     +    +IA+TGS GKTTTK
Sbjct: 62  GAIATISEKEIE------GHPYLLVSDALKAFQVLAQYYIEKMNVDVIAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   LS+  KTY   G+YNN IG+P T+  MP D +  I E+G  HLG+I  L+ + +
Sbjct: 116 DMIAAILSTTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKIILEMGQDHLGDIHVLSEIAK 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AHL  F   E+IA  K +I +G+   G +    D      L A    + 
Sbjct: 176 PRIAVVTLIGEAHLEFFGSREKIAEGKMQITDGMSSDGILIAPGDPIIDPYLPANQMTIR 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                        D +L+  +   E+  +  +      ++     G + A N ++   + 
Sbjct: 236 ----------FGHDQELQVTELKEEKHSLTFKTNALEHQLRIPVPGKYNATNAMVAAYVG 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +  + AL        R +  + A       ++ + YNANP +M+  +   S I
Sbjct: 286 KLLAVAEEDIVDALENLQLTRNRTEWKKSANGAD---ILSDVYNANPTAMRLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-- 421
             +  G++IA+L DM E+GE S   H  +   +   +I  +   G  +  L     +   
Sbjct: 343 PNNDGGKKIALLADMKELGEQSVDLHNQMIMSIRPDSIDTLICYGQDIEGLAQLASQMFP 402

Query: 422 -IHVHYS------ETMDGLFLFIQSSLV 442
              V++       +  D L   ++ +L 
Sbjct: 403 IGKVYFFKKNQEVDQFDQLLAKVKDTLK 430


>gi|288929828|ref|ZP_06423671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
 gi|288328929|gb|EFC67517.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 317 str. F0108]
          Length = 433

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 193/435 (44%), Gaps = 25/435 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+Q+G    VV+                VD
Sbjct: 16  VTTDSRDCPAGSIFFALKGESFNGNKFAAAALQQGCTFAVVDE--AEFCPPNDERYILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL A   LA   R      I+ ITG+ GKTTTKE+L   L         +G++NN IGV
Sbjct: 74  DVLRAFQLLARHHRRTLGTRIVGITGTNGKTTTKELLAAVLGQKYNVLYTLGNFNNDIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  LV P +A+IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVAVVEMGASHPGDIKTLVELVEPDLALITNVGMAHLQGFGSFEGVVKT 193

Query: 210 KA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           K     F    K G +F++ ++     +           + ++G     D  +      +
Sbjct: 194 KGELYDFMRQSKRGKVFIDANNPHLMGIAE------GLDLVTYGTPARPDLFVSGKVVSA 247

Query: 268 EQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                +   +  G   EV  H +G +   NML  L +   L    + A +AL+ + P   
Sbjct: 248 APFLRFAWQREGGAWNEVQTHLVGAYNVLNMLAALSVGLFLGVSAEDANRALANYVPSNN 307

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +    A N+    LI ++YNANP SM  A++    +       ++A+LGDM E+G +S
Sbjct: 308 RSQLEETAHNK----LIMDAYNANPTSMSVALNNFHDMEVP---HKMAILGDMLELGAVS 360

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           QS H  + + LS   +  VWL G        A  +         ++ +   ++    +  
Sbjct: 361 QSAHQAIVDQLSQLALDEVWLVGSEFARTSCAFRK------FNNVEEVIAELKKHRPENH 414

Query: 446 VVVVKSSNSCGFYRL 460
            ++VK SN     +L
Sbjct: 415 YILVKGSNGIHLDKL 429


>gi|332291225|ref|YP_004429834.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169311|gb|AEE18566.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 424

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 184/439 (41%), Gaps = 28/439 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           NG+  D+RS+   + + ++KG +++G+ F   A++ GA L V++        +       
Sbjct: 14  NGVCTDTRSLQKNQIYISLKGDNFNGNKFAKQALKDGARLAVIDEKEYEDDYT-----VL 68

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           VDDVL  L +LA   R      II +TGS GKTTTKE++   LS    T A  G+ NNHI
Sbjct: 69  VDDVLKTLQQLANYHRNYLNLPIIGLTGSNGKTTTKELINAVLSEKYVTVATKGNLNNHI 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  M    + GI E+G +H GEI  L  + +P+   IT    AHL  F G E + 
Sbjct: 129 GVPLTLLSMDSTTEIGIVEMGANHQGEIAMLCEIAQPNFGYITNFGKAHLEGFGGFEGVI 188

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++  L     +    D    ++ KA    L            +        K   
Sbjct: 189 KGKSELYNYLRDNEEMAFINDTDKLQVEKATGITLQTFGSTESKYPISLVDGSESLKLSF 248

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + + +  QL G                     + +   +    D +I  +     +    
Sbjct: 249 KNTTINSQLIGIYNYSN---------------IAVAIAMGTYFDVSIDQIKSGIEEYIPA 293

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 + +  + +I ++YNANP SM AA+  L           IA +G+M E+G  S++
Sbjct: 294 NNRSQIIKKDSYRIILDAYNANPTSMAAALENLK----ATNTTTIAFIGNMFEVGVTSKA 349

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + ++    +I  V+  G             ++    E  +       S + +G  V
Sbjct: 350 EHQAMLDLAHHLSIDQVYAIGPDFCTSV----PQVNQEVYEDYNAFAKAYSSKIPNGATV 405

Query: 448 VVKSSNSCGFYRLINLLLE 466
           ++K S      R++NLL  
Sbjct: 406 LIKGSRGMKMERILNLLEN 424


>gi|325298740|ref|YP_004258657.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318293|gb|ADY36184.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 428

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 120/435 (27%), Positives = 189/435 (43%), Gaps = 22/435 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+KG  ++G+ F   A+ +G    VV+    A   S       VD
Sbjct: 16  VTTDSRHCPQGSMFIALKGETFNGNAFAAQALAQGCRYAVVDEPEYARGES----YILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L  L +LA   R + K  II ITG+ GKTTTKE+++  LS   K     G+ NNHIGV
Sbjct: 72  DCLQVLQQLANYHRRQLKTPIIGITGTNGKTTTKELVSSVLSKKYKVLFTQGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 132 PLTLLRLNKEHEMAVVEMGANHPGEIKALVQIAEPDYGLITNVGKAHLLGFGSFEGVIKT 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L + G   +   +    L         ++   + G   +            E 
Sbjct: 192 KGELYDFLREKGNATIFIQNENSYLNAIAHGLHCVRYGQASGLFVSGKLLSCSPFLAFE- 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  +  +  V  H IG +   N L ++ +        +   +ALS + P       
Sbjct: 251 ----WMSERNTYPVQTHLIGAYNLDNALASVAVGKYFDVAPEDICEALSTYMP----QNN 302

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               ++ G   LI ++YNANP SM AA+    Q+       ++ +LGDM E+GE S   H
Sbjct: 303 RSQLVDTGRNKLIVDAYNANPTSMMAALENFRQVQAP---HKMVILGDMKELGEASLEEH 359

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   L       V L+G    A+  A        + + +D +   ++ S   G  +++
Sbjct: 360 RKIVGFLDGCRFDRVMLAGPEFKAVASA------YEHFDNVDAVKEALEKSKPVGFTILI 413

Query: 450 KSSNSCGFYRLINLL 464
           K SNS    +L   L
Sbjct: 414 KGSNSMKLSQLPAYL 428


>gi|317154470|ref|YP_004122518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944721|gb|ADU63772.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 465

 Score =  210 bits (534), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 114/460 (24%), Positives = 194/460 (42%), Gaps = 12/460 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  D+   + G +        +N +  DSR++ P + FF I+G ++DGH+F   A  +G
Sbjct: 3   LTLGDVQHCLTGMAEECREFAVINAVRTDSRAVEPGDLFFCIEGWNFDGHEFAAQAETRG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV +         +++PV  V D + AL +LA   R    + ++A+TG+ GKTT KE
Sbjct: 63  AVAVVASR----MPEGVTVPVIMVRDTVRALGQLASCWRDLCGSILVAVTGTAGKTTVKE 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   +S          + NN IG+P+++ +     +  I ELG+S  G++  L  +  P
Sbjct: 119 MLAAVVSRKFTVAKNYRNLNNQIGLPVSMLKADSGQEVWIMELGISVKGDMEELAVIASP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT + P HL     +  +A AK+ + + + + GT  ++ D    EL  A +   G 
Sbjct: 179 DVAVITNVGPGHLEGLGDVAGVARAKSSLLKYMRQDGTAIVSKDYP--ELWAAATELTGS 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +S      +   +        +    ++      E      G H A+N+       +
Sbjct: 237 PVGFSTSDESASCHAVFLGADDDGRGRFRLRTPTGQGEFTAPFCGDHYAENVACVAAAAN 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D  +  +        R          G   +ID++YNANP SM  +I     ++
Sbjct: 297 ALGLPFDDIVAGVQAVEADCQRFCC----RPMGDALVIDDTYNANPLSMGRSIRTAVAMA 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   + VLGDM E+G+ +Q+ H +L  ++       V+  G H   +   L   +  
Sbjct: 353 --KDRPLVLVLGDMRELGDEAQARHEELGRLIRDVAPRAVFFKGAHCGDVLCGLDGGVDF 410

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              E         +   +   VV+VK S S         L
Sbjct: 411 TAVEGPGEFLAAWRDMELADAVVLVKGSRSLKMEAFAAAL 450


>gi|172057973|ref|YP_001814433.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
 gi|171990494|gb|ACB61416.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Exiguobacterium sibiricum 255-15]
          Length = 439

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 116/458 (25%), Positives = 206/458 (44%), Gaps = 27/458 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   + Q +    +       +   + DSRSI  +  +  I+G   DGH FI  AV +
Sbjct: 1   MVTIAQIAQWLG---LEETDTRALRNFATDSRSILTEGLYIPIQGARVDGHTFIEGAVAQ 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +    +   +  + I V  V+D L AL  +A     +    +IAITGS GKT+TK
Sbjct: 58  GAIATLWKKGI--PLPEMDITVLEVEDPLQALQIIAKRYLQQVAPKVIAITGSNGKTSTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L    +T+   G++N+ IG+PLT+  MP++ +  + E+GM+  G+I  L++L  
Sbjct: 116 DMIESVLKQSFRTHKTAGNFNSDIGMPLTILMMPIETEVAVLEMGMNGFGDIELLSNLAE 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T I  +H     G   IA AK EI  GL+  G +F++ D+     + A+     
Sbjct: 176 PDIALVTNIGESHAEQVGGRTGIAQAKLEIRSGLKPNGHLFVDGDEPLLGEVPAERIGYH 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               Y                + +E +++    +          +G H  +N    +   
Sbjct: 236 ATNTY--------------VIEQAEATFIGTTFKFDGTTFSIPVLGKHQVRNAAYAIATA 281

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D     L+       R       L  G   +I+++YNA+P SM AAI  ++ +
Sbjct: 282 KALGLTDDVIQAGLNDVQLTPMRM----ERLMYGQTAIINDAYNASPTSMNAAIETIATL 337

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   + VLGDM E+G+  +  H  + + ++   +SH  L G     + D +   ++
Sbjct: 338 DGFTNK--VVVLGDMYELGQQERLLHASVGKKIA-LPVSHAILVGGKGRYIADGIADPTV 394

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            V +++T++     +Q  L    V+++K+S      ++
Sbjct: 395 QVQFADTVEEAARLLQPLLGQQTVILLKASRGLALEQI 432


>gi|259416006|ref|ZP_05739926.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
 gi|259347445|gb|EEW59222.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Silicibacter sp. TrichCH4B]
          Length = 463

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 172/443 (38%), Positives = 246/443 (55%), Gaps = 7/443 (1%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GISID+R++AP + F A+K    DGHDF+  A+ KGAG  +V+   +    +   
Sbjct: 20  DWAVDGISIDTRTLAPGDLFVALKAAR-DGHDFVAQALAKGAGAALVSH--IPEGVAEGS 76

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  VDDV  AL  L  A R R+KA ++A+TGSVGKT+TKEML   L+   +T+A + SY
Sbjct: 77  PLLVVDDVQAALEALGRAGRARTKARVVAVTGSVGKTSTKEMLAAMLAPQGRTHAAVASY 136

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP D +F + ELGM+H GEI  L+   RPH+A++TT+A  HL  F  +
Sbjct: 137 NNHWGVPLTLARMPADTEFAVIELGMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDV 196

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
             IA  KA I EGLE  G   LN D     +L+A + A GI+T +         ++L+  
Sbjct: 197 AGIAREKAAIIEGLEPGGVAVLNADLDETPVLRAVAEAAGIETRWF--GQSADAYRLKDA 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +   + +   + L G+ +      +G H A N    L  V  L  D+D A+  L+ + P 
Sbjct: 255 ELDGDITRAHLSLAGRDVTADIQSLGTHFAMNATGALASVLALGGDLDLALAGLAGWSPV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG R+   L  G  T++D++YNANP SM AA++VL+       GRRIA L DM E+G 
Sbjct: 315 KGRGARFTVDLPSGSVTVLDDAYNANPTSMAAALTVLAATPA--TGRRIAYLADMKELGP 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H  LA   +L  I  +   G  +  L DALP +    + ET       + + +  
Sbjct: 373 QEAALHAALAAHPALDRIDQIHCIGPLMKHLFDALPATKRGIWVETSAEAATALPTHISG 432

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD V+ K S S    R+++ + E
Sbjct: 433 GDAVLAKGSLSMAVARVVDAIRE 455


>gi|254883405|ref|ZP_05256115.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|319644253|ref|ZP_07998766.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
 gi|254836198|gb|EET16507.1| alanine racemase [Bacteroides sp. 4_3_47FAA]
 gi|317384244|gb|EFV65216.1| alanine racemase and UDP-N-acetylmuramoylalanyl-D-glutamyl
           [Bacteroides sp. 3_1_40A]
          Length = 821

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 186/463 (40%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T      SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    + +  +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|116328698|ref|YP_798418.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330644|ref|YP_800362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121442|gb|ABJ79485.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124333|gb|ABJ75604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 466

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 122/455 (26%), Positives = 209/455 (45%), Gaps = 31/455 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---S 80
           +  +  ++  S  +     F  ++G   DGH+FI  A+ +GA   +V  D          
Sbjct: 27  ESPITTVTTASTEVEKNSLFIPLRGNR-DGHEFIGDALSRGASYFLVEEDHPIRKNFDSK 85

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YA 138
                  V D L +L KLA   R R    +IA+TGS GKTTTKE+L   L ++++     
Sbjct: 86  ERAKAIPVKDTLVSLGKLAAFHRSRFNPIVIAVTGSSGKTTTKEILGNCLKNLEEPVLVV 145

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +YNN IG+P TL R+       + ELGM+H GEI  LT + +P  A+ITTI  AH+ 
Sbjct: 146 TEKNYNNEIGLPFTLFRISDRTRIVVCELGMNHKGEIARLTQIAKPDFALITTIGTAHIE 205

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
                + IA AK E+ EGL K G +F      + ++LK+     G + I           
Sbjct: 206 FLGSQKNIAKAKVEVAEGLVKGGKLFYPDTGEYSKILKSTLRRHGSRLIL---------V 256

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +        ++      L+ +  E+  +  GY + +N+ + +  +  +    +  +K +S
Sbjct: 257 KPNHIFSVLQKRPSGFLLEYRDKEIEWNLPGYKLLENLAIAIACLETVGVPTEWILKGIS 316

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   + R    +       +++I+++YNAN  SM +++ V  Q++         VLGDM
Sbjct: 317 TFKSVDKRLNLQKGK-----YSIINDTYNANYESMLSSLEVTDQLA--DGKEFYVVLGDM 369

Query: 379 CEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDG 432
            E+G+ SQ FH +L +  S   N+  ++  G   L +++   +         H++ T +G
Sbjct: 370 KELGKHSQKFHKELGKKCSEFQNLKGLFTFGTDSLWIREEFVKRTTFPRFSEHFAGTEEG 429

Query: 433 LFLFIQSSLV---DGDVVVVKSSNSCGFYRLINLL 464
           L   ++        G +V+ K+S      R ++ L
Sbjct: 430 LVKLVRKFSQTVPKGSIVLAKASRGIQLERFVDSL 464


>gi|120601787|ref|YP_966187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
 gi|120562016|gb|ABM27760.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris DP4]
          Length = 478

 Score =  210 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 182/461 (39%), Gaps = 11/461 (2%)

Query: 5   WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T +++ +A+  G  +G         +  DSR +AP + F  I+G  +DGHDF    V++
Sbjct: 3   LTPNEMREALGAGAILGAQGDATFASVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQ 62

Query: 64  GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +++   D       S  + +  V D + AL +LA   R+RSKA ++ +TG+ GKTT 
Sbjct: 63  GARVLIAERDPFNGECPSADVTIMVVGDSVKALGRLANLHRMRSKARVVGVTGTAGKTTV 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+L   L     T     + NN IG+PL++     +  F + E G+S   ++  L  ++
Sbjct: 123 KELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVL 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I ++  +   H++       +A  K+ +   L + GT  +  D       +A+S   
Sbjct: 183 RPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVR-EARSVCR 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++   + G+              +  S   V+ + +              +       +
Sbjct: 241 RLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  A     +    +           +       G F  ID++YNANP S    +  +
Sbjct: 301 AAVAAAAHLCGLSGEEIAAGLAEAVLPRQRFACATVGGFVCIDDTYNANPLSSARMVEAV 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DA 417
           ++++    G  + VLG+M E+GE +   H  L   L+      V+  G +  A+      
Sbjct: 361 TEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGLRL 418

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                     +          S  +    V+ K S      
Sbjct: 419 GGYGGLFSAVDDTASFVDRFASLGLASAHVLFKGSRGNRLE 459


>gi|294776870|ref|ZP_06742333.1| alanine racemase [Bacteroides vulgatus PC510]
 gi|294449346|gb|EFG17883.1| alanine racemase [Bacteroides vulgatus PC510]
          Length = 821

 Score =  210 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 187/463 (40%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFG-DRSAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLPELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMKSFQDANFLQLANPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNERTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------IYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T      SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFTSREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    + +  +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVSPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S   E +R  +L DM E G+  +  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKEKKRTLILSDMLETGQSGKLLYRQVAELVHSRGVEKIIGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|332969034|gb|EGK08074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kingella kingae ATCC 23330]
          Length = 454

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 130/462 (28%), Positives = 208/462 (45%), Gaps = 24/462 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L   + +  A+            +N I  DSR     + F A+ G ++D HDF+   
Sbjct: 1   MKTL-DLNFICTALN--LPQPENNQPINRIITDSRQAQSGDLFVALIGENHDAHDFVADV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA L +V+ D    +         VDD L AL KLA A R      +  ITGS GKT
Sbjct: 58  LAKGA-LALVSRDDFVGVSG----CLKVDDTLIALQKLAKAWRQVINPFVFGITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEMLT  L          A  G++NNHIG+PLTL  +     + + E+GM+H GE+  
Sbjct: 113 TVKEMLTTVLREKFGADAVLATAGNFNNHIGLPLTLLNLRESHRYAVIEMGMNHFGELAV 172

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P++A++     AH+   F+G+++IA AK+EI++G+++ G   L  DD+   + +
Sbjct: 173 LTQIAQPNVALVNNAMRAHIGCGFNGVDDIARAKSEIYQGIQQDGLAILPIDDANLPIFQ 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A    LG++T  +FG     D      K     S  ++    + + +     G H   N 
Sbjct: 233 AACKDLGLQT-QTFG-FAQGDIHAENVKLQPLVSEFDLVQGSERVHITLPVAGKHNVSNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +            + L+ F   +GR    +        T++D++YNANP SMKAA
Sbjct: 291 CAAATLALAGGVKFTEIARGLANFANIKGR---LQVKHGIKNSTILDDTYNANPDSMKAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++        + V+GDM E+GE  +   H ++        I   +  G + +   
Sbjct: 348 LDVLAKMPA----PHVFVMGDMGELGENEAPKMHEEIGIYAKNLGIELAYFVGENSVQAA 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +         +    D L L +   L +   V+VK S     
Sbjct: 404 EKF--GADGLWFVDKDPLILSLTHDLPENASVLVKGSRFMKM 443


>gi|332363454|gb|EGJ41237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK355]
          Length = 454

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 125/469 (26%), Positives = 201/469 (42%), Gaps = 30/469 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVSLRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL A  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------AYILVDDVLTAFQRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATSYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +          +     G + A N ++       
Sbjct: 236 --------FGPDTDIFLTRLEERKDSLSFGCNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  + A       ++ + YNANP +M+  +   S I  
Sbjct: 288 EGVSETAIAQAFSELELTRNRTEWKKAANGAD---ILSDVYNANPTAMRLILETFSTIPA 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NSGGRKLAVLADMKELGADSKSMHGSMITSLNPEILTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            VHY       +  + L   ++ SL   D +++K SNS    +L+  L 
Sbjct: 405 KVHYFIKNDEKDQFEQLTKAVRESLTSADQILLKGSNSMNLAKLVEDLE 453


>gi|123968201|ref|YP_001009059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198311|gb|ABM69952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. AS9601]
          Length = 457

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 116/465 (24%), Positives = 191/465 (41%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           ++  ++   +    +             ISIDSR++   + F AIKG ++DGH F+   +
Sbjct: 3   FSISEINNVLGDIKNLSEGKKDFLNFKNISIDSRTLLKNDLFIAIKGKNFDGHGFLSEVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KG   VV+    +  +   + P + V+D   A  KLA+  R +    I+AITGSVGKTT
Sbjct: 63  NKGVKSVVI-KKGMQKLLPSNFPYWVVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   L+ + +      ++NN IGV LT+    ++    + E+GM  LG+I  L+  
Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILAADIEDKVLVLEMGMRGLGQIENLSKY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT I  AH+      E I  AK EI + L   G + +  +D F E    +   
Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKENITHAKCEISKFLNPEGVVIIPANDPFLEKTLKEFWK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +     +   +   +        +     +  +         G+H A N L    
Sbjct: 242 GRVIKVRLLNIANQKESIKKDDNLRGFYNPSNKTILIEENTFEISFEGFHNASNFLFAYA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L       I   S               L     T+ DESYNA+P S+KA I  L 
Sbjct: 302 VAKELG------IDFASSNKFDFVSLDGRNKILKSVKTTIYDESYNASPESVKACIKNL- 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
                    +  + G M E+G+ S+ +H ++  +++  +I          +     + L 
Sbjct: 355 ---LEKPRNKFFIFGSMQELGKESEKYHKEIFNLINNSDIKKCLFICEKENEKNYTNFLK 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +  +   I  S   GD ++VK S      ++I L+
Sbjct: 412 DKKKFLVLNNIKDVPQEINKSTKKGDSILVKGSRFWQLDKIIELI 456


>gi|304321492|ref|YP_003855135.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
 gi|303300394|gb|ADM09993.1| hypothetical protein PB2503_09704 [Parvularcula bermudensis
           HTCC2503]
          Length = 478

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 177/476 (37%), Positives = 256/476 (53%), Gaps = 12/476 (2%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M   PLWT  +++ A      G        +  V G+S D+RS+A  + F A+ G   DG
Sbjct: 1   MTDAPLWTVREIIAATGAALRGAGEGETLGERPVYGLSFDTRSLAKGDLFIALSGAR-DG 59

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           HDF   A  KGA   ++      +  S ++P   VDD L AL  LA AAR R    ++A+
Sbjct: 60  HDFAQAAADKGAAAALLTH--RPADLSEALPGLMVDDPLRALEDLARAARQRCFGALVAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTKEML  ALS + + +A   S+NNHIGVP++LA +P    FG+FE+GM+H G
Sbjct: 118 TGSVGKTTTKEMLRAALSPLGEVHAAAKSFNNHIGVPISLASLPQQAAFGVFEIGMNHAG 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L  LVRPH+A+IT++A  HL NFS ++ IA AKAEI  G+ + G   L  D+ ++E
Sbjct: 178 EITPLVDLVRPHVAIITSVAAVHLENFSSVDGIADAKAEILSGIRRGGAAVLPSDNPYYE 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYH 291
            L +++   G++ I  FG    A   +           S  E+ + G+   +     G H
Sbjct: 238 RLVSRARECGVERIVPFGFGDGARPGIWGTAPVMIEGGSRTEIAIAGERHVLELGVPGTH 297

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  +   + L  D+++ I+ L+ F    GRG R+   +      ++DESYNANP 
Sbjct: 298 QVSNALAVIAAGAALGLDLESMIEGLASFRAGAGRGARHHVTIRGKKVLVLDESYNANPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM +A++ L +  P   GRR+AVLG+M E+G  S + H  LA  +     + VWL+G  +
Sbjct: 358 SMASALAQLGETEPVAGGRRLAVLGEMKELGPTSDALHAGLAGPIEDAGTARVWLAGSGM 417

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             L+DALP      ++     L   +  SL  GDVV+ K SN+ G   L+   L +
Sbjct: 418 APLRDALPADRVAEWAPKAPDLLSNLVDSLEQGDVVLFKGSNAAGIGALLEAFLAK 473


>gi|262200427|ref|YP_003271635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
 gi|262083774|gb|ACY19742.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Gordonia bronchialis
           DSM 43247]
          Length = 436

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 131/461 (28%), Positives = 199/461 (43%), Gaps = 27/461 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ + + G  +G      VNG +IDSRS++  + F  I     DGHDFI  A+  GA 
Sbjct: 2   ASEIAEVVGGQLVGD--DVAVNGATIDSRSVSTGQLFVPIVAAR-DGHDFISAALDAGAP 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             + +   V      +     VDD   AL  L  AAR R    ++ +TGSVGKT+TK++L
Sbjct: 59  AYLTSAGAVDGAAGAA---IIVDDTARALAALGAAARDRLPGRVVGVTGSVGKTSTKDLL 115

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++  +T A   S+NN +G+PLTL   P D +  + E+G   +G I  L  + +P +
Sbjct: 116 AGLLATTFRTAASEKSFNNELGLPLTLVNAPDDTEAVVLEMGARGIGHIDLLCSIGKPTV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT +   HL  F  IE +A AK E+ E L   G   LN D      +  ++ A     
Sbjct: 176 GIITRVEGVHLELFGNIEAVARAKGELVEALPDDGIAVLNADHKHVAAMADRTSA----R 231

Query: 247 IYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           + +FG +  +D          E ++   +       ++     G H   N L  +     
Sbjct: 232 VITFGLTPESDVHASAVVIDDELRASFRLHSPWGETDIRLAARGEHQVPNALAAVAAAGG 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   ++   + L         G R     ++   T+++++YNANP SM AA+  L   + 
Sbjct: 292 LGVPLEKFAEGL---LGAALSGLRMELVTSERGVTILNDAYNANPTSMSAALQSL---AA 345

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GRRIAVLG M E+G  S   H  +A       I  V   G               V 
Sbjct: 346 LAAGRRIAVLGTMAELGHDSAWQHEAIASQARELGI-EVIAVGEPTY--------GADVR 396

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +      + S L  GD V+VK S      R+   LL 
Sbjct: 397 HVADVAAASAEL-SDLGAGDAVLVKGSRVAELERVAQALLN 436


>gi|307544547|ref|YP_003897026.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
 gi|307216571|emb|CBV41841.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Halomonas
           elongata DSM 2581]
          Length = 455

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 129/469 (27%), Positives = 197/469 (42%), Gaps = 23/469 (4%)

Query: 1   MNP--LWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M+   L +   + +A+        P   V    I+ D+R + P   F A+ G  +D HDF
Sbjct: 1   MSAVGLDSLGAVARALG----ESPPDTEVALTSITTDTRRLGPGALFVALVGERFDAHDF 56

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A + GA   +V            +P   V D   AL  L  A RL     ++A+TG+
Sbjct: 57  IAQAREAGAAAALVERRQDDP-----LPQLEVADTRLALGLLGRARRLAWGGPLVAVTGN 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT K+ML   LS    T A  G+ NN  G P+TL  +  +    + ELG +HLGEI 
Sbjct: 112 SGKTTVKQMLATILSRSGATLATRGNLNNDFGAPMTLLELDGEHRRAVVELGANHLGEIA 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +   L  P +AVIT +  AH+  F G+  IA AK EI  GL + G   LN DD +F    
Sbjct: 172 WTASLAMPDVAVITNVTGAHVGEFGGMGRIAQAKGEILGGLSRDGVAVLNRDDRYFRFWA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +++ +  +       + +     L   +     ++       +   V    +G H   N 
Sbjct: 232 SQAGSREVLDFGLEDEGRLRAETLVCDEFGR-YAFTLSFDGRELGRVQLALMGRHNVANA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L        L AD    +  L    P  GR   +     +    L+D++YNANP ++KAA
Sbjct: 291 LAAAAAALALRADPADVLAGLEEVEPVAGRLGVF---AGRNGARLLDDTYNANPGAVKAA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L+ +       R  +LG M E+GE S  +H ++        I  +   G        
Sbjct: 348 LETLATLPA----PRWCLLGAMGELGEASAHWHAEVGHHARTLGIDFLGTLGEAARPASR 403

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           A       ++ +  + L   +   L  G  V+VK S S G   ++  L 
Sbjct: 404 AFGEG--GYHFDDREALTRHVLHHLPPGASVLVKGSRSAGMEHVVTALR 450


>gi|325923949|ref|ZP_08185539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545575|gb|EGD16839.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 497

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 127/504 (25%), Positives = 203/504 (40%), Gaps = 54/504 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYVALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V+      + +LS+P   V++   AL ++A   +      +IA+TGS GKT
Sbjct: 58  VAQGASGLLVDR----LLPALSVPQVLVENTELALARIAAGMQRDRATRVIALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D D  I+E+G    G+I
Sbjct: 114 SVKALLLSILEEAGRVDGTTVYANPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K+ I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVARTKSAIYAALPADGVAVINADDAFGAWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + + HA  +    +  +G   +AD   R  +     +   +       ++     G H  
Sbjct: 234 EQQLHAQPVHGRRVLRYGLQASADLTARGLRLQDGGAQFTLVTPQGEAQIALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+   P  GR   +  +       LID+SYNANP S+
Sbjct: 294 LNALAAAGLALGAGIALPIIAAGLAQARPVAGRQIAHTLSSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G   ++ H           +  ++  G    A
Sbjct: 351 DAAIDTLA----AAPGAGWLVLGDMRELGPEGKALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--------------------------- 446
              A      V    T   L   +Q+ L    V                           
Sbjct: 407 AAQAFGDGGRV--FATHAALVAALQADLAQVAVSPTQTQESSSMHEHTGAAAQTAATTAQ 464

Query: 447 ----VVVKSSNSCGFYRLINLLLE 466
               ++VK S      R++  LL 
Sbjct: 465 VPPTLLVKGSRGSAMDRIVAALLA 488


>gi|313205082|ref|YP_004043739.1| udp-N-acetylmuramoyL-tripeptide--d-alanyL-d-alanine ligase
           [Paludibacter propionicigenes WB4]
 gi|312444398|gb|ADQ80754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paludibacter propionicigenes WB4]
          Length = 434

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 108/435 (24%), Positives = 181/435 (41%), Gaps = 13/435 (2%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR       FFA+KG ++D + F L A++ G    VV+    A    +      V+
Sbjct: 13  ICTDSRVCPSGSLFFALKGDNFDANAFALSALKNGCSYAVVDEAEYA----IDERFILVE 68

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL +L +LA   R +    +I ITG+ GKTTTKE++   L          G+ NNHIGV
Sbjct: 69  NVLESLQELATYHRRQLGTKVIGITGTNGKTTTKELIAAVLKEKYNILFTQGNLNNHIGV 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL ++  + +  + E+G +H  EI+ L  +  P   +IT +  AHL  F   E +   
Sbjct: 129 PLTLLQLKPEHEIAVIEMGANHPEEIKALAEIAEPDYGIITNVGMAHLEGFGSFEGVKKT 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E++E + K G       ++   L  A      +        S + +   R     ++ 
Sbjct: 189 KRELYEYIYKAGKAIFINKNNEHLLKMAVDSGFVVNNENVISYSLDKNSSSRIKAVVTDC 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S                     +       +     +        + L+    K      
Sbjct: 249 SPFLEMKCFIGKNDSFDISTKLIGAYNAENVLAAVTIGEYFGLNKEELTAGLEKYNPQNN 308

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      LI ++YNANP SMKAAI   +Q++  G+     +LGDM E+GE S + H
Sbjct: 309 RSQLTITENNKLIIDTYNANPTSMKAAILNFAQMNVEGK---TLILGDMLELGEQSSAEH 365

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + ++L    ++ V L G +  +       +      + +  L  +I++  +    V++
Sbjct: 366 QGIIDLLKQNKLADVLLVGNNFRST------NNPYTCFDEVTELINYIKNKPICNKYVLI 419

Query: 450 KSSNSCGFYRLINLL 464
           K S      +++ LL
Sbjct: 420 KGSRGIKLEKVVPLL 434


>gi|325971090|ref|YP_004247281.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
 gi|324026328|gb|ADY13087.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           sp. Buddy]
          Length = 461

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 116/469 (24%), Positives = 203/469 (43%), Gaps = 30/469 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T   +   ++   +       +  + +DSR       FFA+KG   DG  ++    +KG
Sbjct: 12  FTASSIAPLLKADCLN-PNGKRIADVQLDSRLCTKGSLFFALKGEKSDGFAYLEDVAKKG 70

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTT 122
           A  VVV       ++  +  PV   +DVL +L++LA     R      I ITGS GK+TT
Sbjct: 71  AAAVVVPKSRAAEALARVRCPVLAAEDVLSSLHELAQNYVQRFPSVKTIGITGSCGKSTT 130

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L    + +  T    G+ N+  G+PL++  +     +G+FE+G+ H+GE+  +  ++
Sbjct: 131 KEALARITAVLGSTAKTPGNLNSEYGLPLSIFGLDETSRYGVFEMGIDHVGEMDRMVGML 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P IA++T +  +HL      E IA  K      GLE              + + A+S  
Sbjct: 191 KPSIALLTNVGISHLEKMGSQEIIAEQKARIFHPGLEAGFVSSSCKHLDLIQTIAARSLV 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                               K     +      QL  +        +G H+ ++++  + 
Sbjct: 251 R----------------YDAKEISAVDLGLDGWQLTYEGHTFTVKSVGRHLLEDVVGAIK 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L A+     +AL  F P        R  +++   T+ID+SYNA+  S  + ++ LS
Sbjct: 295 VGRYLGANAGDIAEALEGFEP-----MHGRSFVHRSDVTIIDDSYNASLDSTNSILTYLS 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DAL 418
            +S    G +  VLG M E+G+LS+  H  +A  ++  + +  +L G  +         L
Sbjct: 350 GLSWK--GSKKVVLGPMKELGKLSRQAHRMVARTVAASSFNQTYLFGSEMEEASLELKKL 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V Y++  + L   +Q  L  GD+ ++K+S S    RLI  +   
Sbjct: 408 GYRGQVKYTKDFEELESMVQKQLKGGDLFLLKASRSVAMERLIPSIQRR 456


>gi|256027429|ref|ZP_05441263.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289765392|ref|ZP_06524770.1| histidinol-phosphatase [Fusobacterium sp. D11]
 gi|289716947|gb|EFD80959.1| histidinol-phosphatase [Fusobacterium sp. D11]
          Length = 607

 Score =  209 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 206/442 (46%), Gaps = 35/442 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTNIKDKR 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YN
Sbjct: 248 VVKVTDTIATMQNLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D+   +L   K            G ++N D+++  ++
Sbjct: 368 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIENYE 416

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ S   +  +    E     +G H   N  + + +   +    +   K L       
Sbjct: 417 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
             ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
            ++  V+++K+S       +I 
Sbjct: 587 KMEK-VILLKASRGTALEDIIK 607


>gi|327399669|ref|YP_004340538.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
 gi|327182298|gb|AEA34479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Hippea maritima DSM
           10411]
          Length = 429

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 119/459 (25%), Positives = 186/459 (40%), Gaps = 37/459 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +++  ++  SI +     + G SIDSR+I   E F  IKG  +DG DF   AV+K   
Sbjct: 5   LDEIIAVLKPKSISLDRDYTIKGFSIDSRAIKEGEVFVGIKGERFDGTDFAPEAVKKSKT 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +V          +  P   V++ LGAL +LA     +S A  +AI GSVGKTTTKE++
Sbjct: 65  FAIVEKK-------VDCPHIIVNNALGALKRLATYKLKKSGAISVAIVGSVGKTTTKELV 117

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS        + + NN IGV  TL R   D DF + E+G+++ GE+  +     P  
Sbjct: 118 ADFLSCRYSVCRSLENENNIIGVCKTLLR-VEDEDFCVVEVGINNPGEMEEIAAFFEPDN 176

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +   +   H+ NF  I+ I   K++I               ++  E+LK          
Sbjct: 177 VLFLNVTSTHIGNFENIDAIFKEKSKI------INKSSRLVYNADDEILKEAFEG----K 226

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             SFG     D +             E     K  ++            +L       + 
Sbjct: 227 ENSFGFCFFGDCEF----------RAENNNNVKVEDITLKKPFGLNPYTVLSGFVAAFVF 276

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D       +   K    +     L       I + YNAN  SM  AI  L+++   
Sbjct: 277 GGFKDETCFNDKLKAFKPVGYRMRPEILEDK--LFILDCYNANVNSMMHAIDELAKLK-- 332

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             GR++A+LGDM E+G  S+ FH D+   L+  +I  +   G     + DA       +Y
Sbjct: 333 --GRKLAILGDMLELGSFSERFHRDVGLYLNGKDID-LLAVGGDAFFIFDAFNGKK--YY 387

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            +T       ++  L D D+ ++K+S    F  +   L 
Sbjct: 388 CKTKPEAVELLKDKLTDYDIFLLKASRGMRFEDIFTRLK 426


>gi|319941795|ref|ZP_08016117.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804728|gb|EFW01595.1| hypothetical protein HMPREF9464_01336 [Sutterella wadsworthensis
           3_1_45B]
          Length = 473

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 110/468 (23%), Positives = 188/468 (40%), Gaps = 22/468 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +L++ + G             +  DSR +   + F A+ G   DGH ++L A + GA  
Sbjct: 24  DELVE-VHGDPANEDASWI--RVVTDSRIVRAGDVFVALSGERTDGHRYLLQAAESGAFC 80

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +VV          L++P   V++   A   +A A R R    + A+ GS GKTTT +M+ 
Sbjct: 81  LVVEH----VETGLNVPQLVVENSRRAYGLIARAWRRRFGIALTAVGGSNGKTTTTQMMK 136

Query: 128 IALSSIK---KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             L++       +A  G++NN +GVP TL  +       + E GM+H GE+  L   +RP
Sbjct: 137 AILAAHWGVQNIHATEGNFNNDVGVPHTLLGLHCGCRAAVVEAGMNHRGEMARLADWIRP 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + ++T     H +    + E A     +   L   G      DD   ++  + + A G+
Sbjct: 197 TVVLMTNAQREHQAYLETVAEAAFENGLLIAALPNDGVAVYPADDPCADVWASYALARGV 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T+        A     +         +   +       V      H A           
Sbjct: 257 RTLTYATAEGVAADVRGELVPGKGLRLLAYGIDRVIGLQVQGAHNIHNAVGAAAAALAQQ 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           I    +   + A      +  R        +   FTLID++YN NP S  A+I++L++  
Sbjct: 317 IDVDAIAEGLAAFKALPGRGARM------ASPAGFTLIDDAYNCNPDSAIASIAMLAEEK 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIH 423
           P      I + GDM E+G  ++ +H ++        I + W +G       +A     + 
Sbjct: 371 PAR----IFLFGDMGELGRDAELWHAEVGGAAKTLGIDYFWAAGPLSKHAAEAFGIDGVR 426

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +    D L   +    + G  V VK+S+S GF +++  L   FPA 
Sbjct: 427 GRWFADRDELIAHLPELPLKGATVAVKASHSSGFGKVVETLKH-FPAF 473


>gi|189462962|ref|ZP_03011747.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
 gi|189430244|gb|EDU99228.1| hypothetical protein BACCOP_03664 [Bacteroides coprocola DSM 17136]
          Length = 466

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 122/435 (28%), Positives = 191/435 (43%), Gaps = 23/435 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR+      F A+KG  ++G+ F   A+++G    V++    A  G+       VD
Sbjct: 55  VTTDSRNCPEGSMFIALKGETFNGNAFAAQALKQGCRYAVIDESEYAGEGT-----ILVD 109

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R + K  +I ITG+ GKTTTKE+++  LS    T    G++NNHIGV
Sbjct: 110 NCLQALQQLANYHRRQLKTPVIGITGTNGKTTTKELISTVLSRKFNTLYTEGNFNNHIGV 169

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  + +  + E+G +H GEI+ L H+  P   +IT +  AHL  F   E +   
Sbjct: 170 PLTLLRLTKEHEMAVVEMGANHPGEIKTLVHIAEPDYGIITNVGKAHLQGFGSFEGVIRT 229

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L   G   +   +    L         ++   + G   + +            
Sbjct: 230 KGELYDFLRAKGGATIFIQNENPYLNGIAEGLTCVRYGQTAGLYVSGELISCSPFL---- 285

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  +G S EV  H IG +   NML    I        D    AL+ + P   R + 
Sbjct: 286 -SFRWTAEGVSHEVNTHLIGSYNLDNMLAAAAIGRYFGVSDDDISSALASYLPHNNRSQL 344

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A N+    LI ++YNANP SM    + L          ++ +LGDM E+GE S+  H
Sbjct: 345 KETADNK----LIVDAYNANPTSMM---AALKNFRQIEAPHKMVILGDMKELGEASREEH 397

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + L       V L G    A       +      + +D +   I+     G  +++
Sbjct: 398 QKVVDYLKECGFDRVVLVGPEFAAA------THSYQTFQHVDEVLADIRMHKPQGYYILI 451

Query: 450 KSSNSCGFYRLINLL 464
           K SNS     L+  L
Sbjct: 452 KGSNSMKLSLLLEYL 466


>gi|212693805|ref|ZP_03301933.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
 gi|212663694|gb|EEB24268.1| hypothetical protein BACDOR_03326 [Bacteroides dorei DSM 17855]
          Length = 821

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +        SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    +    +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|329957604|ref|ZP_08298079.1| alanine racemase [Bacteroides clarus YIT 12056]
 gi|328522481|gb|EGF49590.1| alanine racemase [Bacteroides clarus YIT 12056]
          Length = 828

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 112/476 (23%), Positives = 205/476 (43%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T  D+ + I    IG  P   ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YTIEDIARIIGARRIGDTP-AAIDWLLTDSRSLSFPEETLFFALTTKRNDGTRYIR 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRSKATIIAI 113
               +G    VV+ + +  + + +       +  V + L AL KLA   R R +  +I I
Sbjct: 58  DLYTRGVRNFVVSEEGLKEVETFNFQPSTFNLLVVPNPLKALQKLAEQHRDRFQIPVIGI 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  G
Sbjct: 118 TGSNGKTIVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNGQTELAILEAGISEPG 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD F  
Sbjct: 178 EMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDEFIN 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               KS     +  +S  K       + K ++  + + +  +            I     
Sbjct: 235 NCVGKSMLSAREIAWSR-KDMERPLYINKVEKQEDSTVVSYRYLDMDNTFTLPFIDDASI 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  L     L    +   + ++   P      R      +    LI++SYN++  S+
Sbjct: 294 ENSLNCLAACLYLMLPAEQITERMAKLEPI---AMRLEVKEGKNGCLLINDSYNSDLGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  L + S     +R  +L D+ E G+ + + +  +A++++   I  +   G  + +
Sbjct: 351 DIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERIIGVGSEISS 410

Query: 414 LKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
                  +I   +      L   I +  L  + +++++K +   GF  L  +L ++
Sbjct: 411 CAARF--NIEKAFYPDTAALTEAIGKGELRLENEIILIKGARKFGFDELTEVLEKK 464


>gi|295394735|ref|ZP_06804950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972331|gb|EFG48191.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 481

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 214/472 (45%), Gaps = 20/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   +T   +   + G   GI PQ  ++ G+  DSR ++P + F A +G   +G +F   
Sbjct: 1   MKE-FTAQQIADIVGGELYGIDPQTTLSAGVETDSREVSPGDIFVARRGETTNGIEFAPS 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSV 117
           A+    G  +V  + V ++G  ++P   V D   AL KLA A+    R   T+IAITGS 
Sbjct: 60  AIAA--GAAIVIAEAVPTVGDDTLPSCVVTDATVALGKLASASVEALRETMTVIAITGSS 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+ K+++++ L+   +T     SYNN +GVPLT  R   +  F + E+G   +G + +
Sbjct: 118 GKTSVKDLVSVLLAGEGETVYPPNSYNNEVGVPLTALRAGEETRFLVLEMGARSIGNLAY 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT L+RP IAV   +  AH   F  I+  A AKAE+ E L++ G   LN DD     ++ 
Sbjct: 178 LTSLIRPDIAVELNVGAAHSGVFGSIDNTARAKAELVESLQEPGWAVLNADDPRVRDMQN 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWMEVQLQGKSMEVVHHGIGYHMA 293
                     +S G+    D  +      +      S++      +  +V    +G H  
Sbjct: 238 VLAQGVNTMWFSEGEPTRPDTTVWASDVTTGATGRSSFVLHLPGEEPAQVELSLLGRHHV 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L    +  +      + +  L+          R     +    T+I+++YNANP SM
Sbjct: 298 SNALAAATVAHLCGVTARSIVTTLATAGA--ASRWRMELVDSPNGVTVINDAYNANPDSM 355

Query: 354 KAAISVLSQISP----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           +AA+  L+++      +   R +AVLG+M E+G+ S   H  +  ++   NIS     G 
Sbjct: 356 RAALITLAEMGRGDDENPPRRTVAVLGEMLELGDTSIEEHDKIGSLVVRLNISRTIAVGE 415

Query: 410 HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               +  A            + E +      +QS L  GD+V+ KSS   G 
Sbjct: 416 GARPIYQAANLEGSWGNEAAWVENISEARDLLQSELQPGDIVLFKSSRDAGL 467


>gi|256845956|ref|ZP_05551414.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
 gi|256719515|gb|EEU33070.1| histidinol-phosphatase [Fusobacterium sp. 3_1_36A2]
          Length = 607

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/442 (26%), Positives = 196/442 (44%), Gaps = 35/442 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIKDKR 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YN
Sbjct: 248 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D    E L             +  K ++ DF  +  K
Sbjct: 368 NVFKAKTELLEFVDKENTFVCGDD----EYLGKLDVNKVGFNGNNTHKIESYDFSNKGSK 423

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +             E     +G H   N  + + +   +    +   K L       
Sbjct: 424 FILDG-----------KEYEMSLLGKHNISNTSIAIELAKKIGLTDEEIQKGLKEIKISN 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+D+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 585

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
           +    V+++K+S       +I 
Sbjct: 586 IKMDKVILLKASRGIKLEEIIK 607


>gi|148273044|ref|YP_001222605.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clavibacter michiganensis subsp. michiganensis NCPPB
           382]
 gi|147830974|emb|CAN01919.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 469

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 140/480 (29%), Positives = 218/480 (45%), Gaps = 25/480 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L T  ++ +A+ G  +       Q  V+G+   DSR IA    F A  G   DGH F
Sbjct: 1   MIAL-TLAEIAEAVDGRLLLRGDATAQTVVDGVVDTDSRLIARGGIFVAKPGEETDGHLF 59

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA----VAARLRSKATIIA 112
              AV+ GA L++V  ++      L +P   V DV+ AL +LA       R      ++A
Sbjct: 60  APAAVEAGAALLLVEREL-----DLPVPQVLVPDVVDALGRLAHEVVARVRALGDLRMVA 114

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GKTTTK +L   LS+  +T + + S+NN +G PLT+ ++     F + E+G S L
Sbjct: 115 VTGSNGKTTTKNLLHAILSTQGETVSPVASFNNEVGAPLTMLKVTRTTRFLVAEMGASGL 174

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P + ++ T+  AH   F GIE     K E+ + L    T  LN DD   
Sbjct: 175 GEITRLIRMAKPDVGIVLTVGLAHAGGFGGIERTLVTKTEMVKDLLPEDTAVLNADDPRV 234

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +  K+ A  +     FG+   A  +       +  +   + L   S   V   +    
Sbjct: 235 SSMSDKTEAPVLW----FGRDARAAVRATDIVASAAGTTFTLHLPDGSERPVSFRVLGEH 290

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                +     +        AI  +S     +   +     L     T+I+++YNA+P S
Sbjct: 291 HVTNALAAAAGAWALGVDGDAI--VSALQTVQRAERWRMEVLGGNGVTIINDAYNASPDS 348

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M AA+  L+QI    E R +AVLG+M E+GE S+  H  +  +    NI  + + G    
Sbjct: 349 MAAALRTLAQIRG-PEQRTVAVLGEMSELGEFSEEEHDRVGLLAVRLNIGQLVVVGRPAR 407

Query: 413 ALK-DALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            L  +A+ +        ++E        +   L DGD+V+VKSSNS G   L + L E++
Sbjct: 408 RLHLEAIAQGSWDGESIFAEDAAEAREILDRILRDGDLVLVKSSNSAGLRFLGDELGEKY 467


>gi|325067118|ref|ZP_08125791.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces oris K20]
          Length = 483

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 131/483 (27%), Positives = 203/483 (42%), Gaps = 25/483 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +   +  A+ G  IG  P   V G +  DSR  A    F A+ G   DGH  +  A   
Sbjct: 7   LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRQAAEGSLFVAVHGERTDGHAHLGSAGVL 64

Query: 64  GAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--------- 107
           GA   +V+    A  G         ++ +  V+D + AL  LA       +         
Sbjct: 65  GAVGAIVSDLEAARSGLSLDQAEEPTMGLVLVEDTVVALGALARTHLEGLRQAAAERGER 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+        + + E+
Sbjct: 125 LTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADESTRYLVLEM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G S  G I +LT +     A +  I  AH+  F  IE +A+AKAEI  GL   GT  LN 
Sbjct: 185 GASGPGHIAYLTDIAPLDAAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLRPDGTAILNA 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHH 286
           DD+        +     + +    + + AD +       +  ++  ++ L G +      
Sbjct: 245 DDARAAA---MAELAPARVLTFSVRGRQADLRAENVDLDAAARAAFDLHLPGLAEPSRVQ 301

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +             L A +   + A  +         R   +   G   LID+SY
Sbjct: 302 LAVAGVHNVSNALAAAGLALAAGIAPELVAERLGSVSIESPHRMDISELSGDLLLIDDSY 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NAN  S     ++    +  G+ RR+ V+ +M E+GE S + H    E+ +    + +  
Sbjct: 362 NANIDS--MTAALAVLPALAGDRRRVVVISEMLELGESSAADHARTGELAARAGAAMLIG 419

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            G    AL+ A  R + V   +        I + L DGD V+VK SN  G +RL + L E
Sbjct: 420 IGSTQEALEAAGARGVEVVGFDDAATAISQIDALLCDGDAVLVKGSNGSGAWRLADHLKE 479

Query: 467 EFP 469
             P
Sbjct: 480 VRP 482


>gi|237724567|ref|ZP_04555048.1| alanine racemase [Bacteroides sp. D4]
 gi|229437126|gb|EEO47203.1| alanine racemase [Bacteroides dorei 5_1_36/D4]
          Length = 821

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +        SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    +    +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|281421247|ref|ZP_06252246.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
 gi|281404782|gb|EFB35462.1| Mur ligase domain protein/alanine racemase [Prevotella copri DSM
           18205]
          Length = 825

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 203/471 (43%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      +  I  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MT--YTIEKVTTLIGARRYG-DNDTNIGFILTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV N     +          V + L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYRRGVKNFVVTNVPKGYASDYPGANFLKVVNTLEALQRLAERHRDEFNIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPSMFVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISMPGEMLA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NFS +EE    K  +F       T+  + DD     + A
Sbjct: 178 LRDIIQPTIAVLTNLGAAHQENFSSMEEKCREKLILFH---DAETVIYDGDDEVINKVIA 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +      + ++   K+  A F ++  ++    + +    +G+        I     QN +
Sbjct: 235 EYPDYKGEKLFWSLKNAEAPFYVKNIEKQQSVTVITYIYKGEEDSFSIPFIDNASVQNAI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           ++  + S L    +   K ++   P      R    + Q   TLI++SYN++  S+  A+
Sbjct: 295 ISAVVASKLGLSAEDIDKRMTQLEPV---AMRLEVKVGQHGCTLINDSYNSDINSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + G+  ++ + +++++     +      G  +    D 
Sbjct: 352 DFMNRRPDHRGRRHTLILSDIYQSGQAPEALYKEVSDLARKRGVVKFIGIGPELCKQHDV 411

Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  S    +   ++      + +SL   +V+++K +   GF +L  LL+++
Sbjct: 412 IQISEKF-FFPNVEEFIASEVFASLR-DEVILLKGARQFGFDQLTELLVQK 460


>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 829

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/455 (23%), Positives = 182/455 (40%), Gaps = 23/455 (5%)

Query: 5   WTF---HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T     +L   + G   G  P+  +  ++IDSR + P + F A+ G H DGHDF+  A 
Sbjct: 1   MTLPAPRELAALLDGELRGTPPEQPLRAVAIDSRRVLPGDLFVALGGRHCDGHDFVAQAE 60

Query: 62  QKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             GA LVV+  D     G         V D L AL +LA   R      ++A+TGS GKT
Sbjct: 61  GAGASLVVLRRDRCPDSGPGPGCAHLLVADPLLALQRLAAWYRRTHIRRVVAVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             K  LT  L+   +  +  GS+N+ +GVPL +   P   + G+FE G+S  GE+  L  
Sbjct: 121 VVKTALTALLAGRFRVASSPGSWNSQVGVPLAVLTAPPGTELGVFEAGISAPGEMERLEA 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+  +  A+L +F      A  K  +F+G++    +                 
Sbjct: 181 ILQPDHGVLVNVGLANLGSFGSRAVTAREKLRLFQGMDAHSWVIAP----------DDPL 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +              +L   +       +++ L G   +V  H     +  ++L+ L
Sbjct: 231 VNALPLPCRRIHPGAGPPRLLGQRSRGNGLLLQLDLGGCQAQVTVHTRSRPLVDDLLIAL 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L        + L  +     R + +R        T+I+++ + +P S++ A++ +
Sbjct: 291 TAAHHLGVPAAEMAEVLQDYTFGPTRMETWR---TPEGITIINDTASDDPLSVQTALATV 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       GRR+ V G M ++G   Q  H  +  + +    S + L      +   A   
Sbjct: 348 AAFP--EGGRRLFVFGGMGDLGPCEQREHALIGRMAAEQGFSGLLLLPHPARSHTAAAWN 405

Query: 421 SIH----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             H             L   I+     GD V++K 
Sbjct: 406 GCHPAQAAQELADTAALRERIRQMAEPGDTVLLKG 440


>gi|332665903|ref|YP_004448691.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
 gi|332334717|gb|AEE51818.1| Alanine racemase [Haliscomenobacter hydrossis DSM 1100]
          Length = 818

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 107/464 (23%), Positives = 191/464 (41%), Gaps = 14/464 (3%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           +++   + Q +Q  S      +  +  + +DSR I  A +  FFAIKG H+DGH F+  A
Sbjct: 1   MYSIQAIQQILQAKSPNLQFYEAQIEHLLLDSRQIIFAERSLFFAIKGTHHDGHQFLSAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            Q G    VV   +             V++V+ AL +LA   R +    +I ITGS GKT
Sbjct: 61  YQAGVRSFVVTK-VPELSQFPEANFLLVENVVQALQQLAAHHRQQFPLQVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE L   L           S+N+ IGVPL++  +    + GIFE G+S  GE+  L +
Sbjct: 120 TVKEWLFQLLYPHYAIIRSPRSFNSQIGVPLSVWGIQAQHELGIFEAGISRKGEMGNLAN 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++  I + T +  AH   FS   E    K  +           L Y      + +A   
Sbjct: 180 IIQAKIGIFTMLGEAHNEGFSSKAEKLREKLLL-----FAEVDLLIYRRDDATVHRAIKD 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  +  NAD  + K +     + +E + Q     +      +   +N +   
Sbjct: 235 LGRKTLAWSLDQHPNADLYVFKTETFLNHTHLEGRYQSSEQRIALPFTDHASIENAIHCW 294

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    +   + ++   P      R      +    +I+++YNA+ +S++  +  +
Sbjct: 295 AVLLHLGLKSEEIAERMAQLEPV---AMRMELLDGRNNCLIINDTYNADLSSLRLGLQWM 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q        R  VL ++ + G   +  +  +A+++  + +S V   G         LPR
Sbjct: 352 RQH--EHGRNRSLVLSEILQSGSSDEKLYRKVAQLIQEHQVSRVIGIGPATAVFATLLPR 409

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            IH  + ET + L   +       +V+++K +       +   L
Sbjct: 410 EIHQLHFETTEALLEALPHLSFQSEVILIKGARQYHLETIAQAL 453


>gi|260578092|ref|ZP_05846013.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603731|gb|EEW16987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium jeikeium ATCC 43734]
          Length = 504

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 135/500 (27%), Positives = 202/500 (40%), Gaps = 38/500 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +      I    PQ  V G +  DSR I P   F A+ G   DGHDF  
Sbjct: 1   MIELTT-QKIAEVTGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104
            A+  GA L++V    V     L+ PV   +    A              L  +   AR 
Sbjct: 60  AALNSGAALLIVGRP-VEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118

Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            +          ++ +TGS GKT+TK+++   L    +T A  GS+NN IG+P T  R  
Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  F + E+    +G I+ LT +  P + V+  +  AHL  F   + IA AK E+ E L
Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--------GKSKNADFQLRKWKQCSEQ 269
                  L   ++  + + A       + +           G   +      +    +  
Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARA 298

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S+M     G+ + V     G H   N L    +   +  D  T    LS           
Sbjct: 299 SFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMD 358

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSF 388
            R        T+I++SYNANP SM+A I  L+       +    AVLG M E+GE +   
Sbjct: 359 VRTR-ESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMGELGEDASDE 417

Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
           H +L  VL+   I H  + G   +  AL +A     +     E +DG   ++  SL   D
Sbjct: 418 HAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQD 477

Query: 446 VVVVKSSNSCGFYRLINLLL 465
           VV++K+S S G + +   LL
Sbjct: 478 VVLIKASYSDGLWAVAEGLL 497


>gi|265755008|ref|ZP_06089922.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263234619|gb|EEZ20198.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 821

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 185/463 (39%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV                 + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRSFVVGELPADMQSFQDANFLQLTNPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +        SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    +    +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|226360234|ref|YP_002778012.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
 gi|226238719|dbj|BAH49067.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus opacus B4]
          Length = 504

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 123/501 (24%), Positives = 193/501 (38%), Gaps = 52/501 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G       P   V G +  DSR +     F A+ G   DGHD   
Sbjct: 1   MIPM-TLARIAEIVGGELHDVADPSAEVTGTVEFDSRKVTAGGLFLALPGARVDGHDHAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALN----------------- 96
            AV+ GA  V+           + +P   V          A+                  
Sbjct: 60  SAVEAGAVAVLAARP-------VGVPAVVVSPAPGTGPSKAMALEHDTDGSGAAVLAALA 112

Query: 97  ---KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              + +V        T++ +TGS GKT+TK++L   L  +    A  GS+NN +G P T 
Sbjct: 113 KLARASVDDLTAKGLTVVGVTGSAGKTSTKDLLAAVLRPLGPVVAPPGSFNNELGHPWTA 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R      F + E+     G I  L  +  P I V+  +  AHL  F   + IA+AK E+
Sbjct: 173 LRADAGTGFLVLEMSARDRGHIASLAAIAPPKIGVVLNVGTAHLGEFGSRDAIAAAKGEL 232

Query: 214 FEGLEKTGTI---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E L          LN DD     +  ++ A  +    S      A   +   +    ++
Sbjct: 233 PESLPSADDGGVAILNADDPLVVAMAPRTSARVVLVGRSESAHVRATDIVLDERA---RA 289

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +     S+ V     G H   N L    +     AD+D   +ALS      GR    
Sbjct: 290 RFTLTTAAGSVPVELAVHGEHQVGNALAAAAVALECGADLDQIARALSAAAAVSGRRMDV 349

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE---GRRIAVLGDMCEMGELSQS 387
           R   +    T++++SYNANP SM+AA+  L  ++  G     R  AVLG+M E+G  S  
Sbjct: 350 RDRPDGV--TVVNDSYNANPDSMRAALKALVSMARSGREAARRSWAVLGEMAELGPESVV 407

Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
            H  +       ++S + + G      A+                   + G    ++  L
Sbjct: 408 EHDAIGRFAVRLDVSRLIIVGTGRPARAMHQGAVMEGSWGEESILVPDIAGAVALLEKEL 467

Query: 442 VDGDVVVVKSSNSCGFYRLIN 462
             GD+V+VK+S S G + + +
Sbjct: 468 APGDLVLVKASQSIGLWEVAD 488


>gi|283783552|ref|YP_003374306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
 gi|283441475|gb|ADB13941.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis 409-05]
          Length = 536

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 141/511 (27%), Positives = 210/511 (41%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ +A+ G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261

Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---------- 277
             +            G        +S + D            S+ +              
Sbjct: 262 SAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSNL 321

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336
              +EV     G H   N L    +   L   +D     LS          +      N 
Sbjct: 322 MNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381

Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      H +
Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441

Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434
           + E ++  ++  V   G             +            L     V++  + D   
Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSADEAD 501

Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463
             +   +      VV++K S++ G   L   
Sbjct: 502 DIVWKIVAEHPSSVVLLKGSHASGLSVLAEY 532


>gi|330995897|ref|ZP_08319793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
 gi|329574428|gb|EGG55999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Paraprevotella xylaniphila YIT 11841]
          Length = 432

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 121/435 (27%), Positives = 190/435 (43%), Gaps = 18/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  ++G+ F   A+++G    +V+    A           V+
Sbjct: 16  VTTDSRKCPQGALFFALKGDSFNGNAFAAQALEQGCVYAIVDEAEYAVGDDE--RYILVE 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L +LA   R + K  +I +TG+ GKTTTKE+    LS         G+ NNHIGV
Sbjct: 74  DVLATLQQLAHYHRKQFKIPVIQVTGTNGKTTTKELTASVLSQKYNVLYTQGNLNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL  +  +    + E G SH GEI+ L  +V P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLELTSEHTIAVIETGASHPGEIKALAEIVDPDFGLITNVGMAHLEGFGSFEGVVRT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L           DS       +      +  Y     +    +    +     
Sbjct: 194 KGELYDYLRAKHGTVFINHDSED---LKRIAGGLHQICYGSPCDEVLSVEGEVLECAPFL 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +      G+  EV    IG +  QN+L    I      +VD   +AL+ + PK  R + 
Sbjct: 251 KFRWRPAGGEWQEVQTGLIGAYNMQNLLAAATIGRTFGVEVDAVNRALAAYEPKNNRSQL 310

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    L+ ++YNANP SM+AAI     +       R+A+LGDM E+G+ S   H
Sbjct: 311 TETDDNK----LLVDAYNANPTSMRAAIENFRDMKVER---RMAILGDMGELGDCSWKAH 363

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +A++L      HVWL G    A +            + ++ +   ++     G  +++
Sbjct: 364 QAIADLLVESGFEHVWLVGPKFKAARH------PFRTFDNVEQVKKALEIKKPKGYYILI 417

Query: 450 KSSNSCGFYRLINLL 464
           K S+S   Y L + L
Sbjct: 418 KGSHSTRLYDLPDYL 432


>gi|91070140|gb|ABE11062.1| cytoplasmic peptidoglycan synthetase [uncultured Prochlorococcus
           marinus clone HF10-11A3]
          Length = 457

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 119/465 (25%), Positives = 195/465 (41%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQ--GHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           ++  +L   +    +             ISIDSR++   + F AI+G ++DGH F+ + +
Sbjct: 3   FSLSELNNVLGDIKNLSEGKRDFLNFKNISIDSRTLLKNDLFIAIEGKNFDGHSFLPNVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KG   VV+    +  +   + P + V+D L A  KLA+  R +    IIAITGSVGKTT
Sbjct: 63  DKGVQSVVI-KKGMQRLLPSNFPYWVVNDTLEAFQKLALLKRKKLNIPIIAITGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   L+ + +      ++NN IGV LT+    ++    + E+GM  LG+I  L+  
Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATEIEDKALVLEMGMRGLGQIENLSKY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT I  AH+      + I  AK EI + L   G + +  +D F E    +   
Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITYAKCEISKYLNPEGVVIIPANDPFLEKTLKEVWK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +         D   ++       +     +  +         G+H A N L    
Sbjct: 242 GRVIKVRILNIENKKDSFKKENNLRGFYNPSNKTILIEENIFEISLEGFHNASNFLFAYA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D  +  K                  L     T+ DESYNA+P S+KA I  L 
Sbjct: 302 VAKELGIDFASFNKFDFAILG------GRNKILKSVKTTIYDESYNASPESVKACIKNL- 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
                    +  + G M E+GE S+ +H ++  +++  +I          +  +  + L 
Sbjct: 355 ---LEKPRNKFFIFGSMQELGEQSEKYHKEIFNLINNSDIEKCVFICDKKNEKSYTNYLK 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +  +   I  S   GD V++K S      ++I L+
Sbjct: 412 DKKKFLVLNNIKDVPKEINKSTKKGDSVLIKGSRFWQLEKIIELI 456


>gi|239994439|ref|ZP_04714963.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
           27126]
          Length = 431

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 124/430 (28%), Positives = 191/430 (44%), Gaps = 17/430 (3%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
              + A+KGP+++GHDFI  A + GA  V+ + D+       S+PV  V+D   AL  L 
Sbjct: 1   GAVYLALKGPNFNGHDFISTAEKAGASAVIASEDVA-----TSLPVIMVEDTKEALGLLG 55

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A +       IAITGS GKTT KEM    L       A  G++NN IGVPLTL R+   
Sbjct: 56  AAVKAYVAPKTIAITGSSGKTTVKEMCAAILERRGNVLATNGNFNNDIGVPLTLLRLEPQ 115

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ + ELG +H+GEI + T+LV+P +A I   A +HL  F  +  +A AK+EIF+GL  
Sbjct: 116 HEYAVMELGANHIGEIAYTTNLVKPDVATIVNAAASHLEGFGSLLGVARAKSEIFKGLGS 175

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N D  F E  + K   L      +F   +  D   R                  
Sbjct: 176 DGVAVVNVDSQFSEFWQGK---LKQTKTLTFSPQQKNDADFRAEDITIGLDGCAAFHLVC 232

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +   +      N+   L   ++      +           +    R          
Sbjct: 233 PQGDMSIQLTIPGVHNVGNALVAAALTLQVGASLENVRDGLLAMKQVSGRLNVKQLTEQV 292

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D++YNAN AS+ AAI  LS  S    G R+ VLGDM E+GE ++ +H  + E     
Sbjct: 293 RLLDDTYNANVASVNAAIDTLSSFS----GIRVLVLGDMKELGEKARFYHEQVGEYAKQK 348

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL--VDGDV-VVVKSSNSCG 456
            I++++  G    +       +    +   ++ L   ++S L     D+ ++VK S S  
Sbjct: 349 GINYLYTMGVLSQSASAVFNENGG--HFSDVESLLAAMESDLLVQQRDISILVKGSRSSR 406

Query: 457 FYRLINLLLE 466
             R++  +  
Sbjct: 407 MERVVEAVEA 416


>gi|291460928|ref|ZP_06025930.2| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291380013|gb|EFE87531.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 613

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 200/441 (45%), Gaps = 35/441 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V  + +DSR +     FFAI     +G+ +I   + KGA LV+ +     +   +   
Sbjct: 201 VQVKNVVMDSRKVTEGSLFFAI----NNGNSYIKDVLDKGASLVIAD-----NTDVVDER 251

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YN
Sbjct: 252 IVKVSDTVATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 311

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 371

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D    +L   K            G ++  ++++  ++
Sbjct: 372 NVFKAKTELLEFVDKEDTFVCGDDVYLAKLDVNK-----------IGFNEENNYRIESYE 420

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + S   +  +    E     +G H   N  + + +   +    +   + L       
Sbjct: 421 FSDKGSKFTLDGK----EYQMSLLGKHNISNTAIAIELAKKIGLGEEEIEEGLKDIKISG 476

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  R     G    I+++YNA+P SM AAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 477 MRFQEIR----VGQDIYINDAYNASPTSMMAAIDTLNEI--YNDKYKIAILGDMLELGEE 530

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+++   L    I  ++L G  +    D   ++        +  T + +   ++S 
Sbjct: 531 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKFEEHRFCHYSTKEEIVESLKSI 590

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
            ++  V+++K+S       +I
Sbjct: 591 KMEK-VILLKASRGTALEDII 610


>gi|188995067|ref|YP_001929319.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594747|dbj|BAG33722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 434

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 120/432 (27%), Positives = 196/432 (45%), Gaps = 16/432 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P   FFA+KG  +DG+ F   A++KG  L VV+   V            VD
Sbjct: 16  VTTDSRQTPPDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVV----RDERYLLVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R      +I ITG+ GKTTTKE++   LS+        G+ NNHIGV
Sbjct: 72  DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +    I E+G +  G+I  LT + RP+  +IT I  AHL  F  +E +   
Sbjct: 132 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNFGLITNIGRAHLQGFGSLEGVRRT 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ +   G I     D                   S+G S +A  +       +  
Sbjct: 192 KEELYDFIRAEGGILFLNFDDDT-----LIDMSQGLQSVSYGTSADATVRGLIVANNTPY 246

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +++       +V  + +G +   N L  +          +  + AL+ + P      R
Sbjct: 247 LCLDLFDSSNEQQVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKP---SNNR 303

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +    +   +LI ++YNANP SM+AA+     +  H +   + +LGDM E+G  S+  H
Sbjct: 304 SQWIETERGNSLIVDAYNANPVSMRAALDNFDSL--HTDKPLVLILGDMNELGAESKREH 361

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L E ++      + L G  + AL D+ P             L  ++++  +   ++++
Sbjct: 362 MALLERINTGRYRQILLCGPCLTALADSFPGGATG--FADNAVLEEYLKAHSIHDSLILL 419

Query: 450 KSSNSCGFYRLI 461
           K S+     ++I
Sbjct: 420 KGSHGIHLEKII 431


>gi|281425031|ref|ZP_06255944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
 gi|281400875|gb|EFB31706.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris F0302]
          Length = 438

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 118/438 (26%), Positives = 189/438 (43%), Gaps = 18/438 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR+      F A+KG  +DG+ F   A+ KG    +++    A   +    +  VD
Sbjct: 16  ITTDSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADND--RLILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSTVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+    +    + +   +  A+   +     Y      N   ++         
Sbjct: 194 KGELYDYLKAHDCLLFLNESNADLVDMARQREMNRIITYGQSDDANVRGEVIDCAPFLHF 253

Query: 270 SWME---VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           SW +    + + ++ EV  H IG +   NM   + I        +    AL  + P   R
Sbjct: 254 SWTDLSTTESKARTYEVESHLIGAYNIDNMFAAITIGLHFGVTPEQINHALESYVPANNR 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E+GE+S 
Sbjct: 314 SQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELGEVSD 366

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  L + L       VWL G           +         +D +   I +   +   
Sbjct: 367 LEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRK------FRNVDEVKAEIAAHCPENCY 420

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K SN    + L  LL
Sbjct: 421 ILIKGSNGIKLFELPELL 438


>gi|46580912|ref|YP_011720.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450332|gb|AAS96980.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234603|gb|ADP87457.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio vulgaris RCH1]
          Length = 478

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 99/461 (21%), Positives = 183/461 (39%), Gaps = 11/461 (2%)

Query: 5   WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T +++ +++  G  +G         +  DSR +AP + F  I+G  +DGHDF    V++
Sbjct: 3   LTPNEMRESLGAGAILGAQGDATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQ 62

Query: 64  GAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +++   D       S  + +  VDD + AL +LA   R+RSKA ++ +TG+ GKTT 
Sbjct: 63  GARVLIAERDPFNGECPSADVTIMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTV 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE+L   L     T     + NN IG+PL++     +  F + E G+S   ++  L  ++
Sbjct: 123 KELLAQVLGVRGDTARNPLNLNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVL 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I ++  +   H++       +A  K+ +   L + GT  +  D       +A+S   
Sbjct: 183 RPDIGLVLNVGQGHVAGLGDR-GVAYYKSRLLAHLAEGGTGLVCADYDDLVR-EARSVCR 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++   + G+              +  S   V+ + +              +       +
Sbjct: 241 RLQFFSASGRGVGYRAAYDGPVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRC--ALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  A     +    +           +       G F  ID++YNANP S    +  +
Sbjct: 301 AAVAAAAHLCGLSGEEIAAGLAEAVLPRQRFACATVGGFVCIDDTYNANPLSSARMVEAV 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK---DA 417
           ++++    G  + VLG+M E+GE +   H  L   L+      V+  G +  A+      
Sbjct: 361 TEMAA--GGPLVFVLGEMLELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGLRL 418

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                     +          S  +    V+ K S      
Sbjct: 419 GGYGGLFCAVDDTASFVDRFASLGLASAHVLFKGSRGNRLE 459


>gi|126461545|ref|YP_001042659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103209|gb|ABN75887.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 477

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A               G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSR--RPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPAGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL+      F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|297742739|emb|CBI35373.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 213/476 (44%), Gaps = 33/476 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LHA 60
           +PLWT  ++ +A+ G  +   P G +     D+R++ P + FFAI+G ++D H+FI    
Sbjct: 49  SPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPEL 105

Query: 61  VQKGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             KG   V+        +   V   G            L +L K+A  AR +    ++ +
Sbjct: 106 GHKGCVGVIGNWVCPNWDKGFVEMGGE----------TLTSLEKMANYARNKFHGCLVGV 155

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   G
Sbjct: 156 TGSAGKTTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRG 215

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L    RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD    
Sbjct: 216 EIMELARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVM 275

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHM 292
            L              FG+    D +    K        + ++   + +E V    G H+
Sbjct: 276 SL----PVPHGVKKVLFGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHL 331

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           AQN   T  +   L   +     +LS F P      R    + +    +I++ YNANP S
Sbjct: 332 AQNACATAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVS 388

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            KAAI +L  I    +G+R+A+LGDM E+G+     H  +  +    +   + L G   L
Sbjct: 389 TKAAIELLKNI--DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 446

Query: 413 ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + L      ++ YS   + L   I   L   DV++VK S      +++  +  
Sbjct: 447 RAAENLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIKA 502


>gi|224025718|ref|ZP_03644084.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
 gi|224018954|gb|EEF76952.1| hypothetical protein BACCOPRO_02459 [Bacteroides coprophilus DSM
           18228]
          Length = 821

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/463 (23%), Positives = 198/463 (42%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++   +    IG  P   ++ I  DSRS+    +  FFA+K    DGH +I    ++
Sbjct: 4   TIEEITSVMGAERIGNAP-ARIDWILTDSRSLCFPEETLFFALKTKRNDGHKYIHELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV+         +      V + L AL +L    R + +  ++ ITGS GKT  K
Sbjct: 63  GVRNFVVSDLPENGEAYVDTNFLKVANPLRALQRLVAKHREQFQIPVVGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  +    + GIFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPERIITRSPRSYNSQIGVPLSVWLLNEHTELGIFEAGISEMGEMEALRPIIQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I  AH  NF+ +++    K ++F   +    I  N D+       AKS    
Sbjct: 183 PTIGVLTNIGGAHQENFTSLQDKCMEKLQLF---KDCDVIIYNGDNELISSCVAKSLFTA 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S  K       +    +    + ++ +  G   E     I     +N L  L + 
Sbjct: 240 REIAWSM-KDTERPLFIESISKDETGTTIKYRYLGFFKEYRIPFIDDASIENSLNCLAVA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    +   + +    P      R      +    LI++SYN++ AS+  A+  +++ 
Sbjct: 299 LYLMVSPEVIAERMLRLEPV---AMRLEVKEGKNGCVLINDSYNSDFASLDIALDFMARR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     +R  +L D+ E G++S+  +  +A+++    +  +   G  + A        I 
Sbjct: 356 TEDKGRKRTLILSDILESGQVSKLLYRQVADLVHSRGVDRIIGVGEEISAYASRFE--IE 413

Query: 424 VHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  + + L    + S L   +VV++K +    F  + ++L 
Sbjct: 414 KQFFRSTNELLASGVLSGLR-NEVVLIKGARVFHFDDITDVLE 455


>gi|237709333|ref|ZP_04539814.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
 gi|229456718|gb|EEO62439.1| alanine racemase [Bacteroides sp. 9_1_42FAA]
          Length = 821

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 101/463 (21%), Positives = 186/463 (40%), Gaps = 14/463 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQK 63
           +  ++ + +     G      ++ I  DSRS+    +  FFA+K    DGH ++    ++
Sbjct: 4   SIENIEKVLGAKRFGNR-SAQIDWILTDSRSLCFPEETLFFALKTKRNDGHKYLSELYER 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    VV    V            + + L  L KLA   R + +  +I ITGS GKT  K
Sbjct: 63  GVRNFVVGELPVDLQSFQDANFLQLINPLKGLQKLAEKHREQFQIPVIGITGSNGKTIVK 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS  +       SYN+ IGVPL++  M    +  IFE G+S +GE+  L  +++
Sbjct: 123 EWLYQLLSPDRVVTRSPRSYNSQIGVPLSVWLMNEHTELAIFEAGISEMGEMEALQTIIK 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++T I  AH  NF  +++    K  +F+  +                L +   A  
Sbjct: 183 PTVGILTNIGGAHQENFFSLQDKCMEKLTLFKDCDVI-------VYDGDNELISSCVAKS 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +        SK  + +    +   +                   I +    ++  +L  +
Sbjct: 236 LFASREIAWSKKDNERPLFIESIQKGEHATTIKYRYLGMPNEFSIPFIDDASIENSLHCL 295

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++    +    +        E    R      +    LI++SYN++ AS+  A+  +S+ 
Sbjct: 296 AVALYMMVPPEQITERMARLEQIAMRLEVKEGKNGCVLINDSYNSDLASLDIALDFMSRR 355

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     +R  +L DM E G+ S+  +  +AE++    +  +   G  +          I 
Sbjct: 356 SDDKGKKRTLILSDMLETGQSSKLLYRQVAELVHSRGVEKIVGVGEEIRTAAARFE--IE 413

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            ++  T + L    + + L   +V++VK S +  F R+ + L 
Sbjct: 414 KYFFRTTEELLESDLLAGLR-NEVILVKGSRAFHFDRISDRLE 455


>gi|294784923|ref|ZP_06750211.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486637|gb|EFG33999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 3_1_27]
          Length = 607

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 196/442 (44%), Gaps = 35/442 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIKDKR 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YN
Sbjct: 248 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D    E L             +  K K+ DF  +  K
Sbjct: 368 NVFKAKTELLEFVDKENTFVCGDD----EYLGKLDVNKIGFNGNNTHKIKSYDFSNKGSK 423

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +             E     +G H   N  + + +   +    +   K L       
Sbjct: 424 FILDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+D+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 585

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
           +    V+++K+S       +I 
Sbjct: 586 IKMDKVILLKASRGIKLEEIIK 607


>gi|296284502|ref|ZP_06862500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 489

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 169/478 (35%), Positives = 239/478 (50%), Gaps = 27/478 (5%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LW+  ++ +A  G + G       +G+ +DSR + P + F A+KG   DGH FI  A  
Sbjct: 25  ALWSADEIAEATGGVASG---DFQCSGVEMDSRDVRPGDLFVALKGEAMDGHRFIDKAFA 81

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+         +  P   V+D   AL+ LA AAR R +AT IA+TGSVGKT  
Sbjct: 82  AGAAAAIVDRP-------IDWPHVLVEDTTAALHALAAAARTRGEATRIAVTGSVGKTGV 134

Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE +  AL      + +  + SYNNH+GVPL++ARM     +G+FE+GM+H GEI  L  
Sbjct: 135 KEAIFSALDRASRGQAHRSVRSYNNHVGVPLSVARMSPRARYGVFEMGMNHAGEIAPLAD 194

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VRP +AVITTIAPAH+ N   +E IA  KA+IF GL+  G   +  D   FE LKA + 
Sbjct: 195 HVRPDVAVITTIAPAHIENLGSLEAIADEKAQIFTGLKPGGAAIIPADSEQFERLKAHAE 254

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           A G +  +SFG++ +A  +L      +    S +  Q+    +       G H   N L 
Sbjct: 255 AAGAEV-FSFGRADHARVRLLDAIPAANGGASLVTAQIDDTRLCYSVAEPGEHWIANSLA 313

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +  +  +  D+  A  AL      +GRG R+  A   G   LIDESYNANPASM    +
Sbjct: 314 VMACIYAVGGDLGAAGIALGEMGGLKGRGARHAIAAAGGRALLIDESYNANPASM---RA 370

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---- 414
            L+Q+      RRIAVLG M E+GE S  FH  L E +    + +  L G  +  L    
Sbjct: 371 TLTQLGQTPASRRIAVLGAMGELGEFSTRFHEALLEPIEEGQVDYAVLVGDAMEPLVRKM 430

Query: 415 ----KDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                + L       +          ++   L  GD ++VK SN+ G  RL++  +  
Sbjct: 431 GTAHANGLGNPPAFAHCAGPAEAIAALEEFGLNAGDAILVKGSNAVGLGRLVDHFVSR 488


>gi|221202510|ref|ZP_03575540.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
 gi|221208168|ref|ZP_03581173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221172071|gb|EEE04513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2]
 gi|221177605|gb|EEE10022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia multivorans CGD2M]
          Length = 468

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 193/472 (40%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++          +S DSR++   + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLDEAARLIPGATVHGDAHVTFERVSTDSRTVGAGDLFVALKGERFDAHDFLADV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   +++P+    +   +L  LA   R R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAQAPAGVALPMIVGGETRASLGALAHGWRKRFALPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETEI 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALPPDGVAVFPADDAYASIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F    +      +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDDERQTAAQVAGRLHGGELAIDTPSGTLTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAA 356
                       +    + L  F P +GR +  R +       T++D++YNANP SM+AA
Sbjct: 293 AATAAALAAGVALSAIKQGLESFEPVKGRLQVRRASAGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+         R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARERGIDALFALGDASRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    + + +  L   + ++       V+VK S      R+++ L  +
Sbjct: 409 AYGEAAR--HFDDVGTLVDALLAAGYGAEASVLVKGSRYMKMERVVDALTNQ 458


>gi|260905301|ref|ZP_05913623.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Brevibacterium linens BL2]
          Length = 488

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 126/477 (26%), Positives = 203/477 (42%), Gaps = 23/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++  A+ G   G+ P+  ++ G+  DSR + P + + A +G  +DG +F   
Sbjct: 1   MKRL-SAAEIATAVSGELYGVDPETKLSAGVVTDSREVGPGDIYVARRGESFDGIEFAAA 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----ARLRSKATIIAITG 115
           AV+ GA L++  +  V ++   ++P   V D   AL +LA       R   + T+IAITG
Sbjct: 60  AVEAGAALIIGES--VPTLDDATLPTVLVSDATEALGQLAKCNIESLREAGEITVIAITG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTT K++    L+   +T     SYNN +GVPLT  R      F + E+G   +G +
Sbjct: 118 SVGKTTVKDLAADLLAGEDETVWPPNSYNNEVGVPLTALRAGETTRFLVLEMGARSIGNL 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT LVRP IAV   +  AH   F  IE  A AKAE+ E L       LN DDS    +
Sbjct: 178 AYLTSLVRPDIAVELAVGTAHSGVFGSIENTARAKAELVESLSAGSVAILNADDSRVAGM 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +           +S  +S                   +          +       +   
Sbjct: 238 REVLSPDVSTLWFSQRESLPEWVADEDSVVRGTGVTTDASGHATFSLNLPGEEPQDVRLA 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEG-------RGKRYRCALNQGFFTLIDESYNA 348
           ++    + + L +        + +                R     +    T+++++YNA
Sbjct: 298 LIGEHHVGNALASAAIAHACGVGMKSIVTTLSTSSAASRWRMELIDSPSGVTVLNDAYNA 357

Query: 349 NPASMKAAISVLSQISP----HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NP SM+A++  L+ +          R  AVLG+M E+GE S S H D+ E++   NI+  
Sbjct: 358 NPESMRASLKTLASMGRGDEESRPRRTFAVLGEMLELGEESISAHSDIGELVVRLNITRT 417

Query: 405 WLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            + G     + +A            +  T       + + L  GD+V+ KSS   G 
Sbjct: 418 IVVGDGAKPIFNAANLEGSWGNEAAWVPTAAEAKDLLNAELAPGDIVLFKSSRDAGL 474


>gi|288800647|ref|ZP_06406104.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
 gi|288332108|gb|EFC70589.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           sp. oral taxon 299 str. F0039]
          Length = 442

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 13/430 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+KG +++G+ F   A+++G    VV+      IG+       VD
Sbjct: 17  ITTDTRDCPKGSIFFALKGANFNGNSFAHKALEQGCAYAVVDESTPDMIGNEQ--YIIVD 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L +LA   R     TII ITG+ GKTTTKE+L   L+        +G+ NN IGV
Sbjct: 75  NVLTTLQQLANHHRKALDTTIIGITGTNGKTTTKELLATVLAQKYNVLYTLGNLNNDIGV 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + +  + E+G SH G+I+ L  +V P+ A+IT +  AHL  F   + +   
Sbjct: 135 PKTLLRLNKEHNMAVIEMGASHPGDIKTLVDIVEPNYALITNVGRAHLQGFGSFDGVKRT 194

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KAE+++ +E        + ++    L            Y      N+       +  +  
Sbjct: 195 KAELYDFMEAHNRANNIFINAESADLLEMFSTHCKSESYIAYSPTNSVEASFVAEITANN 254

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRG 327
            ++  + +  + E                   +++ ++      +++  +          
Sbjct: 255 PFVSFRWKETNNESDTWHNVGTHLIGAYNIANMLAAVSIGRTMGVESKDICKALENYIPS 314

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +     T+I ++YNANP SMKAA+    ++    +   + +LGDM E+GE+S  
Sbjct: 315 NNRSQLIKTAHNTIIMDAYNANPTSMKAALENFIKMDVERK---MVILGDMKELGEVSNC 371

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + ++L+L     VWL G   +A ++           E ++ +   +Q + V    +
Sbjct: 372 EHQKICDLLNLAQFDCVWLVGKEFMATQNDFKS------FENVEQVIAELQQTDVQNFCI 425

Query: 448 VVKSSNSCGF 457
           +VK SN  G 
Sbjct: 426 LVKGSNGIGL 435


>gi|329118766|ref|ZP_08247464.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465113|gb|EGF11400.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 459

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 192/472 (40%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +DGHDF    
Sbjct: 5   MKPL-DLNFICQALN--LPAPAQNLAVSRIVTDSRDIRAGDVFFALDGERFDGHDFAEDV 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA   VV+ +  A +         V D L AL  LA A R      +  ITGS GKT
Sbjct: 62  LAAGAAAAVVSREDCAGLRGA----LQVADTLEALQTLAQAWRENVNPFVFGITGSGGKT 117

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G+ NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 118 TVKEMLAAVLRRRFGEEAVLATAGNLNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 177

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + RP  A++     AH+   F G  +IA AK+EI++GL               +   
Sbjct: 178 LTRIARPDAALVNNALRAHVGCGFDGTADIARAKSEIYQGLGAD----GLALIPCEDANA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                                   R           ++    ++  V     G H   N 
Sbjct: 234 EIFQTASAAHKQQTFGVDKGGVHARNIVLKPLSCAFDLVCGSETASVSLPVPGRHNVHNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +    +       ++     L  F   +GR K  R        TLID++YNANP SMKAA
Sbjct: 294 VAAAALALAAGLTLNEVSDGLKDFSNIKGRLKVKRGIKG---ATLIDDTYNANPDSMKAA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+ +       R+ V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 351 IDVLAALPA----PRVFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +    +    +    D L   +   L +G  V+VK S       + + L ++
Sbjct: 407 ETFGAA--GLWFAAKDPLIQVLTHDLPEGASVLVKGSRFMAMEEVADALEDK 456


>gi|297184170|gb|ADI20289.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 424

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 115/438 (26%), Positives = 186/438 (42%), Gaps = 27/438 (6%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I  D+RSI P   FFA+KG  ++G+ F L A++ GA   VV+ ++          +  V
Sbjct: 12  SICTDTRSIVPGSVFFALKGVSFNGNTFALQALEAGAAFAVVDENVGD-----DERLIKV 66

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            DVL A+   A+  R       I +TGS GKTTTKE+    L +  K +A  G++NNHIG
Sbjct: 67  SDVLTAMQGCALDYRRHLNIPTIGLTGSNGKTTTKELFLAVLKTKYKVHATKGNFNNHIG 126

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+   P + +  I E+G +H  EI  L  +  P +  IT    AHL  F G+E I  
Sbjct: 127 VPLTILSAPKETEMLIVEMGANHQKEIGQLASIAEPTLGYITNYGKAHLEGFGGVEGIIK 186

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+E+++ + +        +      L+            +FGK+        + K    
Sbjct: 187 GKSELYDYIAQNEEGVALVNADDAIQLEK----SAACRRTTFGKTNAQFTYTVEEKDEFA 242

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                +     +++    G          + L             ++AL+ + P   R +
Sbjct: 243 GIQFSIATASYTIQSNLSGSFNCTNLAAAVAL--GRYCDVPAPAIVQALTDYLPAMNRVE 300

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   NQ    ++ ++YNANP SM  +I   ++    G      VLGDM E+GE S + 
Sbjct: 301 WRKTPSNQ----VLLDAYNANPTSMSLSIENFAKWHKDG----WLVLGDMFELGEESAAE 352

Query: 389 HIDLAEVLSLYNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-V 446
           H  + +++   N+     L G H          S       T   L  + + +    D  
Sbjct: 353 HRAIVKLVQRINMEERCILVGKHFGRT------SWRGKQFPTTGDLKTYWKENGAPKDAA 406

Query: 447 VVVKSSNSCGFYRLINLL 464
           +++K S      +L+ LL
Sbjct: 407 ILLKGSRGIALEQLLPLL 424


>gi|171316203|ref|ZP_02905426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
 gi|171098617|gb|EDT43414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Burkholderia
           ambifaria MEX-5]
          Length = 468

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 113/473 (23%), Positives = 194/473 (41%), Gaps = 21/473 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGAAVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118
             +           + +     + +  V+  +   AL  LA   R R    ++A+TGS G
Sbjct: 60  AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113

Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE 
Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L  P +A++      H    + +E +A   A +   L   G      DD++  + 
Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYAGIW 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +    A     I  F           +         + +     ++ V    +G H A+N
Sbjct: 234 R---VAATGNPILDFALHDAERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354
            L           ++    + L  F P +GR +  +    +    T++D++YNANP SM+
Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADIGSLAGATVVDDTYNANPDSMR 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+         R+ V+GDM E+G+   +FH ++        I  ++  G      
Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             A   +   H+ +    +   + +       V+VK S      R+++ L  +
Sbjct: 407 CTAYGATAR-HFGDVGALVAALLAAGYGAQATVLVKGSRYMKMERVVDALTNQ 458


>gi|298252632|ref|ZP_06976426.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
 gi|297532996|gb|EFH71880.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           5-1]
          Length = 536

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/511 (27%), Positives = 210/511 (41%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+ +  ++ +A+ G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-SISEIAKAVHGEIHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSIEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLGETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261

Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---------- 277
             +            G        +S + D            S+ +              
Sbjct: 262 SAMSCLVENKHVRWFGRNVKNGLLESASKDDYQLSASNIKLDSFGKAVFTTTERSNSSDL 321

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336
              +EV     G H   N L    +   L   +D     LS          +      N 
Sbjct: 322 MNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381

Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      H +
Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441

Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434
           + E ++  ++  V   G             +            L     V++  + D   
Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHDAVYFVHSADEAD 501

Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463
             +   +      VV++K S++ G   L   
Sbjct: 502 DIVWKIVAEHPSSVVLLKGSHASGLSVLAEH 532


>gi|295698680|ref|YP_003603335.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157466|gb|ADD79911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 460

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 127/467 (27%), Positives = 216/467 (46%), Gaps = 21/467 (4%)

Query: 7   FHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              +   + G+   I      +  +  IS +SR+      F AIKG ++DGH F   +V+
Sbjct: 6   LKKIASIVSGNLQKISCFHASKLIIQKISTNSRNFRSCSLFIAIKGKNFDGHHFAKQSVK 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G+  ++        I S+  P   V++ + A+ +LA   R +S A  IAITGS GKT+ 
Sbjct: 66  NGSLAILSEK-----ILSIDHPQIIVENTIHAIERLASWIRKKSLAKFIAITGSSGKTSV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM    LS +  T +   + NN +GV LTL R+     + + E+G S LGEI+F + +V
Sbjct: 121 KEMTHTILSQVGSTISTKKNNNNSLGVLLTLLRVNEFHQYVVIEIGASQLGEIKFSSKIV 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + +I  +  +HL  F     ++ AK+EIF GL K  T  +N D+   +  K K   L
Sbjct: 181 NPDVVLINNLFASHLKGFGSFSNLSRAKSEIFFGLSKFNTAVINLDNHDIKHWKHKIRNL 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +S  K K + F      + +     ++        V  H  G H   N + +  +
Sbjct: 241 SKVWFFSLKKKKKSHFYSNTISEKNFFMKFDIHTPFGIARVSSHLAGLHNISNSIASAAL 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + A +D   K L  FHP +GR      +       ++D++YN+N  SMK+AI VLS+
Sbjct: 301 SISVGAKIDQIEKGLKNFHPIDGRMYPVYISSE---KIILDDTYNSNFGSMKSAIDVLSK 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +     G R+ V+GDM E+G+ S  +H  ++ ++   N++ +   G + L +  +    +
Sbjct: 358 MP----GYRVLVVGDMLELGQYSSFYHKKISRIIQNKNLNTIISFGKYSLFISQSFQNGM 413

Query: 423 HVHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           H H   +   L   +     + +   +++K S       +I  +   
Sbjct: 414 HFH---SKKKLTKKLIYLISIHEKISILIKGSRKMRMEEVIEDIRRR 457


>gi|212702353|ref|ZP_03310481.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
 gi|212674231|gb|EEB34714.1| hypothetical protein DESPIG_00366 [Desulfovibrio piger ATCC 29098]
          Length = 473

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 103/460 (22%), Positives = 183/460 (39%), Gaps = 23/460 (5%)

Query: 7   FHDLLQAIQ-GHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++++ +     +        V  +  DSR   P   F  I G   DGHD+   AV++G
Sbjct: 5   LAEIVRCLGCARDVKVADGSVTVTSVVTDSREAVPGSLFVCIAGERVDGHDYAARAVEQG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+    +      LS+PV  V D + AL  +A   R +S A ++ ITGS GKTT KE
Sbjct: 65  AVAVLAARPLEG----LSVPVLLVQDTVRALGAVAALWRGKSSARVVGITGSAGKTTVKE 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   LS   KT     + NN +G+PL + +   D DF +FE G+SH G++  L  +++P
Sbjct: 121 LLAHVLSRRGKTACNALNLNNQVGMPLCMLKTDGDEDFWVFEAGISHEGDMDELGAILQP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+I  +  AH         +A  K+ +   L   G   ++ D       +A++    +
Sbjct: 181 DLALILNVGAAHTEGLGER-GVAWHKSRLLAHLAPEGQALVSADYDDLVR-EARAVFGDV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               + G+  +               +           +      Y     + +      
Sbjct: 239 LFFTASGRPLSYRAAYAGCSDGVHGQYRLWLDGRPCDVIAPFRGDYGTENCIAVAAAAHM 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     + A        P +   +  R     G + ++D++YNANP SM   +   ++ +
Sbjct: 299 LGLTAEEIAAGFADAQLPPQRFARSRR-----GNWDIVDDTYNANPLSMARMLDAAAESA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--- 421
                  + VLG+M E+G ++   H  L   L+      V+  G H  A++D L      
Sbjct: 354 QKRP--FVVVLGEMRELGGVADREHERLGRHLAQLRPVLVFWRGGHADAVRDGLEHGLYT 411

Query: 422 IHVHYSETMDGLFLFIQSSL-----VDGDVVVVKSSNSCG 456
                 ++ +     ++  L       G +++ K S    
Sbjct: 412 GKFLPVDSGEAFVQALREHLPADTGEQGGLMLFKGSRGNH 451


>gi|332528822|ref|ZP_08404796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
 gi|332041681|gb|EGI78033.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Hylemonella
           gracilis ATCC 19624]
          Length = 496

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 122/490 (24%), Positives = 204/490 (41%), Gaps = 29/490 (5%)

Query: 3   PLWTFHDLLQAIQ-GHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           P++   D+L  +     +          +  V  +  DSR++   + F A++G  +DG+ 
Sbjct: 7   PMFGLRDILPWLGNAQLLADEAGGPAVDEVRVRRVHTDSRTLREGDLFVALRGDRFDGNA 66

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATII 111
           F+  A   GA   + +    A++    +P   V D   AL +LA   R       +  +I
Sbjct: 67  FLAQARAAGAVAALCSD--AAALRQAQLPGIVVSDTRRALGQLAQGWRQHIARGHRLPLI 124

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           A+TGS GKTT  +M    L + K        G++NN IGVPLTL R+    +  + ELGM
Sbjct: 125 AVTGSNGKTTVTQMTAAILRAHKPQTMLATEGNFNNDIGVPLTLLRLRPRHELAVVELGM 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI  L  + RP +A++      H      IE +A     +   L   G      DD
Sbjct: 185 NHPGEIAELAAITRPTVALVNNAQREHQEFMHSIEAVARENGAVISALGADGVAVFPSDD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQ-------LRKWKQCSEQSWMEVQLQGKSME 282
           ++  +    + A    T      + +             +      +  ++ +    ++ 
Sbjct: 245 AYTGIWHELAGARSRLTFSVNDAAADLHCADPALAAPQWQVDDKGGRWEVQARTPAGALR 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L            ++   + L  F P  GR +  R  +     TLI
Sbjct: 305 FTLRVAGLHNVKNALAAAACALAAGVPLNAIARGLESFEPVSGRSRALRLPVAGRELTLI 364

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YNANP S++AAI VL+ +     G R+ VLGDM E+G+    FH ++        I 
Sbjct: 365 DDTYNANPDSVRAAIDVLASLP----GPRLLVLGDMGEVGQEGPRFHAEVGTYARARGIE 420

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   G    A   A    +  H+ + +D L L + +SL     V+VK S      R++ 
Sbjct: 421 LLHTLGEMSEATTQAFTGGM--HHGQDIDALNLVVLASLPQVHSVLVKGSRFMKMERVVQ 478

Query: 463 LLLEEFPAIQ 472
            +   + A++
Sbjct: 479 AIQA-YAAME 487


>gi|294783655|ref|ZP_06748979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294480533|gb|EFG28310.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 609

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/441 (25%), Positives = 201/441 (45%), Gaps = 35/441 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIADER 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YN
Sbjct: 248 IVKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P T+  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 308 NHIGLPYTILNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E + K  T     D    +L   K            G +++ +F++  ++
Sbjct: 368 NVFKAKTELLEFVNKENTFVCGDDVYLAKLDVNK-----------IGFNEDNNFRIESYE 416

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + S   +  +    E     +G H   N  + + +   +    +   + L       
Sbjct: 417 FSDKGSKFTLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISS 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  R   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIRVGED----IYINDAYNASPTSMKAAIDTLNEI--YDDKYKIAILGDMLELGED 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+++   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
            ++  V+++K+S       +I
Sbjct: 587 RMEK-VILLKASRGTALEDII 606


>gi|317402447|gb|EFV83016.1| murein precusor biosynthesis protein [Achromobacter xylosoxidans
           C54]
          Length = 954

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 195/442 (44%), Gaps = 21/442 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S D+R I   E F A+ G ++D H+++  A ++GA        +  ++   S+P  
Sbjct: 515 VKGVSTDTRRIGAGELFVALVGENFDAHNYLDQAAERGACA----AVVAHAVPESSLPQL 570

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143
            + D   AL ++  A R R K  ++A+TGS GKTTTKEM++             A  G+ 
Sbjct: 571 VLGDTRVALMRIGAAWRARFKLPVVAVTGSNGKTTTKEMISAMLAGWRGEAGRLATAGNL 630

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLT+ R+  +    +FELGM+H GEI  L  +  P +A++T     H      +
Sbjct: 631 NNDIGVPLTVLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPSVALVTNAQREHQEFMHTV 690

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A         L   G      D+ +  +          +    FG     D    + 
Sbjct: 691 EAVALENGAAIAALPADGVAVYPGDEPYAAIW---DRLAAPRRALRFGLQPGLDVYAEQI 747

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               + +   V     S ++     G H  +N L  +       A +D A++AL+ F P 
Sbjct: 748 LADVDSTRCRVVTPVGSADLTLPVPGVHNLRNALAAIASAIAAGAPLDVAVRALAGFSPV 807

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR +  + +       LID++YNANP S++AAI VL++I+    G R+ VLGDM E+G+
Sbjct: 808 AGRMQYKKLSDG---TLLIDDTYNANPDSVRAAIDVLARIA----GTRVLVLGDMGEVGD 860

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H ++        +  +   G    A   A     H     ++D +   ++     
Sbjct: 861 NGPAMHEEVGNYARELGLDALITLGDASRAAAAAFGTGAHA--CASVDEVVAALRGLRAS 918

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
              V++K S      R++   +
Sbjct: 919 --CVLIKGSRFMRMERVVTAFI 938



 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 89/489 (18%), Positives = 157/489 (32%), Gaps = 50/489 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +P  T    +  +               + +DSR I P + F A  G   DG  +I  A+
Sbjct: 9   SPAATVEQAVAWLHSRVSLTA------HLKLDSREIEPGDVFVACPGLSSDGRLYIEKAL 62

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
             GA  V+      A+I +       P+  V  +   L +L      R  +T  ++A+TG
Sbjct: 63  ALGASAVLFEAPATAAIEAAAAAGDTPMLPVTGLRALLGELGDTWYGRPSSTLAVVAVTG 122

Query: 116 SVGKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDV 160
           + GKT++ + +  AL    K                +   H+  P       L     D 
Sbjct: 123 TNGKTSSVQWIAHALGRNDKPCGTIGTLGAVLPDGQTLGGHLTTPDVLTVHRLLAAMRDA 182

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                 +  S +G  +     VR  +A  T +   HL     +E    A           
Sbjct: 183 GAKAVAMEASSIGIEQGRMDGVRVALAAYTNLTRDHLDYHGTME-RYEAAKASLFRWPGL 241

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQG 278
               +N DD     L A   A      YS           + R  +  ++     +    
Sbjct: 242 SAAVVNADDEAGRRLIASLPADLSVMGYSLSADPAIPAAMRARDLQATAQGQIFTLVSPH 301

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++V   +G H   N+L+  G++  L        + L+   P +GR +          
Sbjct: 302 GEAQIVTRLLGAHNVSNLLLVAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVAASTQ 361

Query: 339 FT-----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  L+   Y+  P S+  A+  L  ++    GR + V G     G    +      
Sbjct: 362 AHAGRGALVVVDYSHTPDSLARALMALRPVAQARAGRLVCVFG----CGGDRDAGKRPEM 417

Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             ++     HV +S  +  +         +   +P S+ V          +    +    
Sbjct: 418 GRIAAELADHVVVSSDNPRSESPDAIVAQILAGIPASVAVEVQVDRARAIMQAIWASAPE 477

Query: 445 DVVVV--KS 451
           DVV++  K 
Sbjct: 478 DVVLLAGKG 486


>gi|332557534|ref|ZP_08411856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275246|gb|EGJ20561.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 477

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 178/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A               G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALA-DQRDGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSR--RPGGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG++ +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGV-PAVTFGQTADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL+      F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGIGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|120404499|ref|YP_954328.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957317|gb|ABM14322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 526

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 126/498 (25%), Positives = 207/498 (41%), Gaps = 38/498 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  + +   + + + G    +  +      V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIAM-SLARIAEIVGGRLADVSDEDAARTVVTGTVEFDSRAVTPGGLFLALPGARSDGHD 59

Query: 56  FILHAVQK-----------GAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F   AV             G   VVV+      A+ G+  +    VD    A+       
Sbjct: 60  FAATAVAAGAVGVLAARPVGVPAVVVDPVRPDPAAPGTAGVLEHDVDGSGAAVLAALARL 119

Query: 103 RLRS-------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                        TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R
Sbjct: 120 ASAVAAELVAGGLTIIGITGSSGKTSTKDLIAAVLAPLGEVVAPPGSFNNELGHPWTVLR 179

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E+   H G I  L  +  P IAV+  +  AHL  F   E IA+ K+E+ +
Sbjct: 180 ATRSTDYLVLEMSARHPGNIAALARIAVPSIAVVLNVGTAHLGEFGSREVIAATKSELPQ 239

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + ++G + LN DD     +  K+ A  ++     G                 +    + 
Sbjct: 240 SVPESGVVILNADDPAVAAMADKTAARVVRVGR--GAEALDVCADGVSLDALARPSFTLH 297

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                + V     G H   N L    +     A  +    AL+   P      R +    
Sbjct: 298 TGAADVPVTLAVHGDHQVSNALCAAAVALECGATPEQVAAALATAGPV--SRHRMQVTAR 355

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393
           +   T+I+++YNANP SM+A +  L+ +S  G  +GR  AVLG+M E+G+ + + H  + 
Sbjct: 356 EDGVTVINDAYNANPDSMRAGLKALAWMSRGGASKGRSWAVLGEMAELGDDAITEHDRIG 415

Query: 394 EVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +    ++S + +   G  + A+                    D     +++ L  GDVV
Sbjct: 416 RLAVRLDVSRLIVVGSGRPMSAMLHGAVMEGSFGSEAIPVADTDAALEILRAELRPGDVV 475

Query: 448 VVKSSNSCGFYRLINLLL 465
           +VK+SNS G   L + L+
Sbjct: 476 LVKASNSAGLGALADALV 493


>gi|254526298|ref|ZP_05138350.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537722|gb|EEE40175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 457

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 115/440 (26%), Positives = 186/440 (42%), Gaps = 13/440 (2%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              ISIDSR++   + F AIKG ++DGH F+   + KG   VV+    +  +   + P +
Sbjct: 28  FKNISIDSRTLLKNDLFIAIKGKNFDGHSFLPEVLNKGVKSVVI-KKGMQRLLPSNFPYW 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D   A  KLA+  R +    I+AITGSVGKTTTKEM+   L+ + +      ++NN 
Sbjct: 87  VVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTTTKEMIGGVLNKLGRIKLSHANFNNE 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IGV LT+    ++    + E+GM  LG+I  L+    P IAVIT I  AH+      + I
Sbjct: 147 IGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKYSEPDIAVITNIGTAHIGLLGSKKNI 206

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK EI + L   G + +  +D F E    +S    +  +         +   +     
Sbjct: 207 THAKCEISKFLNPEGVVIIPANDPFLEKTLKESWKGRVIKVKLLNIENQEEIFKKDDNLR 266

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              +  +  +  +         G+H A N L    +   L       I   S        
Sbjct: 267 GFYNPSKKTILIEENTFEISLEGFHNASNFLFAYAVSKELG------IDFASFNKFDFVS 320

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                  L     T+ DESYNA+P S+KA I  L          +  + G M E+G+ S+
Sbjct: 321 FGGRNKILKSLKTTIYDESYNASPESVKACIKNL----LEKPRNKFFIFGSMQELGKESE 376

Query: 387 SFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +H ++  +++  +I          +     + L           +  +   I  S   G
Sbjct: 377 KYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLKDKKKFLVLNNIKDVPQEINKSTKKG 436

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D +++K S      ++I L+
Sbjct: 437 DSILIKGSRCWQLEKIIELI 456


>gi|167764920|ref|ZP_02437041.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
 gi|167697589|gb|EDS14168.1| hypothetical protein BACSTE_03312 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/491 (23%), Positives = 203/491 (41%), Gaps = 36/491 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T  D+ + I    IG  P   ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YTIEDIARIIGARRIGDRP-AAIDWLLTDSRSLSFPEETLFFALPTKRNDGTRYIR 57

Query: 59  HAVQKGAGLVVVNTDMVASIG--------------------SLSIPVFGVDDVLGALNKL 98
               +G    VV+ + +  +G                      +  +  V + L AL KL
Sbjct: 58  DLYARGVRNFVVSEERLNEVGIGEPKVEDAVRQETVDTAAMQPAFNLLVVPNPLKALQKL 117

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A   R R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  
Sbjct: 118 AEQHRDRFQIPVIGITGSNGKTIVKEWLHQLLSPERMITRSPRSYNSQIGVPLSVWQMSE 177

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  I E G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +
Sbjct: 178 QTELAILEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD 237

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +  N DD F      KS     +  +S  K       + K ++  + + +  +   
Sbjct: 238 ---VVIYNGDDEFINNCVGKSMLAAREIAWSR-KDMERPLYISKVEKQEDSTVISYRYLD 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    I     +N L  L     L    +   + ++   P      R      +  
Sbjct: 294 MDNTFTLPFIDDASIENSLNCLAACLYLMLPAEQITERMAKLEPV---AMRLEVKEGKNG 350

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             LI++SYN++  S+  A+  L + S     +R  +L D+ E G+ + + +  +A++++ 
Sbjct: 351 CLLINDSYNSDLGSLDIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNS 410

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCG 456
             I  +   G  + +        I   +      L   I +  L  + +++++K +   G
Sbjct: 411 RGIERIIGVGNEISSCAARFS--IEKAFYPDTATLIEAIGRGELRLENEIILIKGARKFG 468

Query: 457 FYRLINLLLEE 467
           F  L   L ++
Sbjct: 469 FDALTEALEKK 479


>gi|317050620|ref|YP_004111736.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
 gi|316945704|gb|ADU65180.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurispirillum indicum S5]
          Length = 445

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 124/469 (26%), Positives = 188/469 (40%), Gaps = 29/469 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + ++  L       ++   P     G +IDSR +   E F A+     DGH +I  A
Sbjct: 1   MKKICSWAQLAALHPEATLLGEPGATFAGFAIDSRRVQSGELFIALATASDDGHAYIADA 60

Query: 61  VQKGAGLVVVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +KGA   +V+        +      +  V D L AL  LA   R + +  ++A+TGS G
Sbjct: 61  CRKGAAGALVHQLPADHQQLIDAGHALLVVPDTLAALAILAANWRQQWEFPVVAVTGSSG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT    L     +   T    G+YNNHIG+PL++   P D   G+FELGMS  GEI  L
Sbjct: 121 KTTVSACLRTLFPTSAGTT---GNYNNHIGLPLSMLGTPADAAIGVFELGMSGSGEIDAL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L++P I +IT +  AH+        I  AK E+               D   + L  +
Sbjct: 178 AELLQPQIGLITNVGSAHIGKLGSFAAILEAKLELARHCSCLI------VDGDGQELLDR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQN 295
           +         S G +       +  +   E  +        S     +        M +N
Sbjct: 232 ARQRHQDV-LSVGFTAGCQVFPQSMELRGEGGYHLEIRHPWSHGLLSLTVPFGQKFMVKN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+ +     L  D       L        R + +R   N    T I + YN+NP S++A
Sbjct: 291 SLLAIAAGLKLGLDQAALQAGLRRVQLPPLRWELHRRGGN----TYIFDCYNSNPGSLRA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+        H  G R+AVLG+M E+G  S+  H  +A  +   N   V   G     L 
Sbjct: 347 ALEDF----SHYPGYRVAVLGEMRELGAFSEREHRKVASAI---NCDLVLTYGDEARFLA 399

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           D L   I   +  T++ +   + +      VV+VK S      RL++ L
Sbjct: 400 DELGADI-ATHCPTLEDVVARLANC--QNAVVLVKGSRGNQMERLLDAL 445


>gi|221638509|ref|YP_002524771.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159290|gb|ACM00270.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase precursor
           [Rhodobacter sphaeroides KD131]
          Length = 477

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 179/475 (37%), Positives = 248/475 (52%), Gaps = 16/475 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PLWT  +   A               G+SID+RS+ P + F A+     DGH F+  A
Sbjct: 1   MTPLWTSDE---AAAATGGCATRAFAATGVSIDTRSLGPGDLFVALT-DQRDGHAFVAEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA   +V+            P+  V DVL  L  L  AAR R++A ++ +TGSVGKT
Sbjct: 57  LARGAAAALVSR--CPEGLPEDAPLLLVPDVLEGLRALGRAARARTRARVVGVTGSVGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +TKEML   L      +A   SYNNH GVPLTLARMP DVDF + E+GM+H GEI  L+ 
Sbjct: 115 STKEMLRATLGGQGTVHAAEASYNNHWGVPLTLARMPADVDFAVVEIGMNHPGEIAPLSR 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L RPH+A+ITT+A AHL  F  +  IA  KA I EGLE  G   L        +L A++ 
Sbjct: 175 LARPHLALITTVAAAHLEAFDSLAAIAEEKAAILEGLEPGGRAILPAGLEVSPVLAARAA 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ALG+    +FG+S +AD++L   +   E +       G +        G H A N L TL
Sbjct: 235 ALGV-PAVTFGQSADADWRLADIQITPEATVARASHAGGTFLFKVLTPGRHFASNALATL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF---FTLIDESYNANPASMKAAI 357
                L  D+  A   L ++ P  GRG R R AL+      F LID+++NANPASM A++
Sbjct: 294 AAAEALGLDLTIAACDLGLWTPPSGRGTRERIALDPVDEAGFDLIDDAFNANPASMAASL 353

Query: 358 SVLSQISPHGE------GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            +L+ ++P         GRRIA+LGDM E+G      H  +A+  +L  I+ V   G  +
Sbjct: 354 ELLAAMAPTDGVGRIAAGRRIAILGDMLELGPTEAELHRAVADHPALAEIALVHCVGPRM 413

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            AL +ALPR     + ET   L    +  +  GD+V+VK S       +++ L +
Sbjct: 414 RALHEALPRRQRGEWVETAAELVPRARLLVDAGDIVLVKGSKGIKVSLVVDALRK 468


>gi|269468988|gb|EEZ80561.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 419

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 122/460 (26%), Positives = 202/460 (43%), Gaps = 46/460 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ +     ++       +NG+  D+R       F A+ G ++D HD+I HA + GA 
Sbjct: 6   LKEIAKIFNSQALLGS-DIIINGVFTDTRKKMQGGLFVALMGENFDAHDYIDHAEKMGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +  +       ++PV  VDD   AL+ +A       K T++AITGS GKTTTK ML
Sbjct: 65  AIIASKQV-----KTNLPVIKVDDTETALSTIATWHLNNIKPTVVAITGSNGKTTTKNML 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+    T    G+ NNH+GVP+TL  +     F + E+G +HLGEI+ L  +  PHI
Sbjct: 120 ANILNLKAPTLKTQGNLNNHLGVPMTLLMLEPKHQFAVIEMGANHLGEIKHLRDITHPHI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T    AH+  F G   +  AK EI+    +                        + T
Sbjct: 180 AVVTNTLDAHIGEFGGFNNLVKAKGEIYHTNSQNI----------------------VNT 217

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +F    +       +         ++ ++ + + V    +G H  +N L        L
Sbjct: 218 NTTFTGDISFGKDGDVFASNINSHQFDLNIKNEKIAVSLQLLGQHNIENSLAASACAYAL 277

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D++T  K L     ++GR       +++   T+ID++YNA+P SM+AAI  L      
Sbjct: 278 DIDINTIKKGLEKTQAEKGRLT----IIHRQGLTIIDDTYNASPQSMRAAIDALLSF--- 330

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
            +G +IAVLG M E+G  S++FH  + ++    ++   +  G                 +
Sbjct: 331 -DGEKIAVLGSMAELGNDSKTFHQQIGKLA-KVSLDTFYTYGELAKDYG--------GIH 380

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            E +  L + I +       V+VK S       L+ LL +
Sbjct: 381 FEDLHKLSMHILTKY-SNATVLVKGSRMVKLDHLVQLLQK 419


>gi|148657880|ref|YP_001278085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           sp. RS-1]
 gi|148569990|gb|ABQ92135.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseiflexus sp. RS-1]
          Length = 490

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 123/502 (24%), Positives = 204/502 (40%), Gaps = 49/502 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
             +    ++L+ +Q  +    P       Q   +   IDSR    +  F A++G   DGH
Sbjct: 4   TAVLQLDEVLRGVQAEADRRKPSLPPALMQVAFSEAVIDSRQATSECLFVALRGERVDGH 63

Query: 55  DFILH-------------------AVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVL 92
           +F+                     ++++     V++    + +      S+ +  VDD  
Sbjct: 64  EFLADAAARGARGALVRRDKLSNLSLER--PYAVIDPVTGEGLEQATPDSVLLIAVDDPQ 121

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            ALN+LA   R +    +I +TGSVGKT+TKE+    L    +T     SYN+   +P+ 
Sbjct: 122 AALNRLAAYHRGKYHPVVIGVTGSVGKTSTKEVTASVLQRSFRTLKSPRSYNSEASLPIV 181

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L ++  D    + E+GM   GEI  L  L RP + ++T + P+HL     IE I  AK+E
Sbjct: 182 LLKLTADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSE 241

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSW 271
           + + L   G   LN DD     +   + A      + +G    AD      +    +   
Sbjct: 242 LPQALPDDGFAILNIDDLRVRAMAEVTRA----RPFFYGLDPAADLWADSIESRGLQGIS 297

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V  QG +  +    +G H     L       +L  + +  I  L     +        
Sbjct: 298 FRVHYQGDAFYLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRDESAQLRLL---- 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   TLID++YNA+PASM AA+++        EGRRIA+LGDM E+G + +  H  
Sbjct: 354 AVPGVNQTTLIDDTYNASPASMLAALNL----LAELEGRRIAILGDMLELGSVEEEAHRR 409

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447
           +   ++      +   G     + D   ++      V   +  D       S L  GD+V
Sbjct: 410 VGARVAEV-ARFLITVGRRARWIADEALQAGMAPDQVWSVDDNDEAADLAMSCLAPGDIV 468

Query: 448 VVKSSNSCGFYRLINLLLEEFP 469
           ++K S       ++  L +  P
Sbjct: 469 LIKGSRGMLMESIVARLQQRRP 490


>gi|237743958|ref|ZP_04574439.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
 gi|229432989|gb|EEO43201.1| histidinol-phosphatase [Fusobacterium sp. 7_1]
          Length = 611

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 118/442 (26%), Positives = 206/442 (46%), Gaps = 35/442 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTNIKDKR 251

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YN
Sbjct: 252 VVKVIDTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 311

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 371

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D+   +L   K            G ++N D+++  ++
Sbjct: 372 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIESYE 420

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ S   +  +    E     +G H   N  + + +   +    +   K L       
Sbjct: 421 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 476

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 477 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 530

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
             ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 531 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 590

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
            ++  V+++K+S       +I 
Sbjct: 591 KMEK-VILLKASRGTALEDIIK 611


>gi|118602202|ref|YP_903417.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567141|gb|ABL01946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 417

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 114/461 (24%), Positives = 186/461 (40%), Gaps = 48/461 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + + ++              +  D+R       F A+ G ++D HD+I  A Q GA
Sbjct: 5   TTSTIAKILK---TDCTTNVEFKDVCTDTRKHMNGALFLALTGDNFDAHDYIDQAQQMGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +V N  +     +  +P   VDD   ALN +A       K  +IAITGS GKTTTK M
Sbjct: 62  VAIVANKPV-----NNQLPTLVVDDTQIALNTIASWHLKNIKPIVIAITGSNGKTTTKNM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L+    T    G+ NNH+GVP+TL  +     + + E+G +HLGEI  L  LV P+
Sbjct: 117 LANILNLQAPTLKTQGNLNNHLGVPMTLLTLEEQHQYAVIEMGANHLGEIAHLCSLVNPN 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T    AH+  F G + +  AK EI+                             + 
Sbjct: 177 IAIVTNTLDAHIGEFGGFDNLVKAKGEIYSNNSHNI----------------------VN 214

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T  +F    +       +      +  ++ +  + + V  + IG H  +N L        
Sbjct: 215 TQDTFTGDVSFGKGGDIFASKLVNNKFDLNIYKQKISVTLNLIGTHNIENALAASTCAYA 274

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D++   + L                +N   F +ID++YNANP S   A+  L   S 
Sbjct: 275 LGIDINLIKQGLE----VTKAEHGRLEVINTKKFRIIDDTYNANPHSTTTALKALQDFS- 329

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G +I VLG M E+G  S+  H+ + ++         +  G                 
Sbjct: 330 ---GEKIVVLGAMRELGNDSEELHLKIGQLAKKSA-DTFYSYGKLTQHYY--------GI 377

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + ++   L   + ++      V++K S +     L++LL +
Sbjct: 378 HFDSKQQLANHLLAN-HVHATVLIKGSRTVKMNELVDLLKK 417


>gi|315606277|ref|ZP_07881293.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
 gi|315251968|gb|EFU31941.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella buccae ATCC 33574]
          Length = 831

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 185/471 (39%), Gaps = 9/471 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MT--YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV       +          V + L AL +LA   R      ++ ITGS 
Sbjct: 58  ELYRRGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  M    + G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T I  AH  NF    +    K  +F           +           
Sbjct: 178 LRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFHDARTVVYNADDELVERVLAQME 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +   G          ++    +       ++S   V    K  E   + I +    ++ 
Sbjct: 238 STLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASIC 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++    +         +        E    R      Q   TLI++SYN++  S+  A+
Sbjct: 298 NSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + GE   + + +++++     +      G  + A  + 
Sbjct: 358 DFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQSER 417

Query: 418 LPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +    +  +++  +   +  SL   +V+++K +   GF RL  LL+++
Sbjct: 418 IQIAEK-DFFGSVEEFIVSDVFRSLR-DEVILLKGARRFGFDRLTELLVKK 466


>gi|288926575|ref|ZP_06420492.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
 gi|288336652|gb|EFC75021.1| Mur ligase domain protein/alanine racemase [Prevotella buccae D17]
          Length = 831

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 185/471 (39%), Gaps = 9/471 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MT--YTIEKVTTLIGARRYG-DKETNIGFLLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV       +          V + L AL +LA   R      ++ ITGS 
Sbjct: 58  ELYRRGVKNFVVTEVPANCASDYPDANFLRVVNTLEALQRLAERHRDEFNIPVVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  M    + G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMCVTRSPRSYNSQIGVPLSVWLMNEQTEVGVFEAGISQPGEMLA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T I  AH  NF    +    K  +F           +           
Sbjct: 178 LRDIIQPTIAVLTNIGEAHQRNFESKGDKCKEKLVLFHDARTVVYNADDELVERVLAQME 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +   G          ++    +       ++S   V    K  E   + I +    ++ 
Sbjct: 238 STLPGGEPQERLGWSVRDRHAPMFVKSIEKKESATTVTYIYKGGEENWYSIPFIDDASIC 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++    +         +        E    R      Q   TLI++SYN++  S+  A+
Sbjct: 298 NSIICAIVALRIGIAPDELDRRMQGIEQVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + GE   + + +++++     +      G  + A  + 
Sbjct: 358 DFMNRRPDHKGRRHTLILSDIFQSGEEPTALYQEVSDLARERGVVKFIGIGPEICAQSER 417

Query: 418 LPRSIHVHYSETMDG-LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +    +  +++  +   +  SL   +V+++K +   GF RL  LL+++
Sbjct: 418 IQIAEK-DFFGSVEEFIVSDVFRSLR-DEVILLKGARRFGFDRLTELLVKK 466


>gi|297197151|ref|ZP_06914548.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197716564|gb|EDY60598.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 447

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 128/467 (27%), Positives = 194/467 (41%), Gaps = 24/467 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL +  ++   + G  +       V     +DSR       F A  G H DGH +   
Sbjct: 1   MIPL-SVGEIAAVVGGT-VSGDGSVTVTAPAVLDSRRAQQGSLFLAFAGEHVDGHAYAEQ 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A Q GA  V+ +           +P    +D   AL  LAV    RLR + T+  +TGS 
Sbjct: 59  AGQAGAAAVLGSRPTP-------LPTVVAEDTQAALQALAVHVVGRLRDRLTVFGVTGSQ 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   LSS  +T A  GS+NN +GVPLT+ R      F   E+G  HLG+I  
Sbjct: 112 GKTSTKDLLAAVLSSAGQTIATFGSFNNELGVPLTMLRTEATTRFLALEMGARHLGDISE 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LV P IAV+  +  AHL  F   E IA AK E+ +GL   GT  LN DD     +++
Sbjct: 172 LTGLVAPDIAVVLNVGQAHLGEFGSREAIAKAKGELVQGLAPGGTAVLNADDPRVAAMRS 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +    +    +FG++++AD +                    +   V             
Sbjct: 232 LTDRPVL----TFGRTEHADVRALGLALDRLGRPSFTLRTADASAPVSLPHVGAHQALNA 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                  ++         A+             R   +     L+++SYNANP S +AA+
Sbjct: 288 SAAVAAGLVAGVPLDTAAAMLATASLSRWRMEPRDLASGA--ILLNDSYNANPDSTRAAL 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                ++     R IAVLG+M E+G+ S+ +H  + E  +      V   G   L + + 
Sbjct: 346 DA---LAAIEGRRHIAVLGEMLELGDDSEVWHRAVGEYAAAR-ADVVVTVGKAALRIAEG 401

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                             ++++ L   DVV+VK+S       +   L
Sbjct: 402 A--GDRAVALADNGAAVHWLRNHLAADDVVLVKASRGARLDEVAAAL 446


>gi|34540839|ref|NP_905318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
 gi|34397153|gb|AAQ66217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Porphyromonas gingivalis W83]
          Length = 420

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 119/432 (27%), Positives = 193/432 (44%), Gaps = 16/432 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       FFA+KG  +DG+ F   A++KG  L VV+   V            VD
Sbjct: 2   VTTDSRQTPSDSIFFALKGELFDGNRFASSALEKGCALAVVDDPSVV----RDERYLLVD 57

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL +LA   R      +I ITG+ GKTTTKE++   LS+        G+ NNHIGV
Sbjct: 58  DVLTALQQLAAFHRKSLGTPVIGITGTNGKTTTKELMAAVLSTTYPVLYTEGNLNNHIGV 117

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +    I E+G +  G+I  LT + RP+  +IT I  AHL  F  +E +   
Sbjct: 118 PLTLLRLKAEHRIAIIEMGANKPGDIAELTRIARPNYGLITNIGRAHLQGFGSLEGVRRT 177

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ +   G I     D                   S+G S +A  + R     +  
Sbjct: 178 KGELYDFIRAEGGILFLNFDDDT-----LIDMSQGLQSVSYGTSADATVRGRIVANNTPY 232

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +++        V  + +G +   N L  +          +  + AL+ + P      R
Sbjct: 233 LCLDLFDSSNEQRVCTNLVGDYNLPNALAAITAGRFFDVPDEAIVSALATYKP---SNNR 289

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +    +   +LI ++YNANP SM+ A+     +  H +   + +LGDM E+G  S+  H
Sbjct: 290 SQWIETERGNSLIVDAYNANPVSMRVALDNFDSL--HTDKPLVLILGDMNELGAESKREH 347

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L E ++      + L G    AL D+ P             L  ++++  +   ++++
Sbjct: 348 MALLERINTGRYRQILLCGPCFTALADSFPGGATG--FADNAVLEEYLKAHSIHDSLILL 405

Query: 450 KSSNSCGFYRLI 461
           K S+     ++I
Sbjct: 406 KGSHGIHLEKII 417


>gi|302335885|ref|YP_003801092.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
 gi|301319725|gb|ADK68212.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Olsenella uli DSM 7084]
          Length = 481

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/476 (25%), Positives = 192/476 (40%), Gaps = 20/476 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +  D+L+A     +     G V  +++DSR  A   AF A  G   DG+ F   A+ + 
Sbjct: 4   MSVRDILEATGASRVAGPCDGVVRSVTLDSRQAAEGVAFVAFAGERVDGNAFASEALARA 63

Query: 65  AGLVVVN---TDMVASIGSLSIPVFGV--DDVLGALNKLAVAARL-RSKATIIAITGSVG 118
           A +V+          +       +     DD    L +LA A R    + T++ +TGSVG
Sbjct: 64  ATVVLTGPAPKGCAEAAERHGCALLRAEGDDGEEFLLRLAGAWRRLNPQWTVVGVTGSVG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ML   L +  + +A  G++NN IG+PLTL       +  + E+GM+H GE+  L
Sbjct: 124 KTTTKDMLAAGLRARFRVHATAGNFNNLIGLPLTLLSADPSDEVVVAEMGMNHAGELSRL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK-------TGTIFLNYDDSF 231
               RP +A+IT +  +H+      E IA AKAEI  G+                  D+ 
Sbjct: 184 AACARPTVALITNVGTSHIGLLGSRESIARAKAEIVGGMRPSSSAQGAVRPCLALTSDND 243

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F  L    +A            +  D          +      +L           +G  
Sbjct: 244 FAALIEDEYAAPAGVEVLHVGGRPCDDVRAGGIALDDGGLPRFELSFADGWSEPCTLGMP 303

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
               +   L  ++I          AL           R       G   +ID+SYNA+P+
Sbjct: 304 GRHVVSDVLLAMAICDRLGVDRHDALDRIARMPQTHMRLEVVTAPGRPRMIDDSYNASPS 363

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S+ AA+ VL  ++    GRR+AVLG++ E+G+ +   H  +    +   +  + L G H 
Sbjct: 364 SVAAALDVLCSMA--CTGRRVAVLGEVGELGDEAPRLHGYIGAYAAAKPLDLLVLVGTHD 421

Query: 412 LALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            A               +   + +      I   L + D+V+ K+S + G  R + 
Sbjct: 422 AAAMAEAALTMGFSEDRMERVDDVQAALDLIAPVLGEDDLVLAKASRASGLDRFVK 477


>gi|289704959|ref|ZP_06501374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
 gi|289558295|gb|EFD51571.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Micrococcus luteus SK58]
          Length = 504

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 137/493 (27%), Positives = 200/493 (40%), Gaps = 34/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +A+ G       P   +   + DSR +      + A  G   DGHDFI 
Sbjct: 1   MIAL-TAAQIAEAVSGTLSATLDPATVLVHATPDSREVTAEGTLYVAKPGERADGHDFID 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAIT 114
            A+  GA  V+      A  G+   P   V+D + A+  LA       R  S  T+I IT
Sbjct: 60  AALGAGAAAVLAERATHAPDGAA-HPAIIVEDAVLAMGALAREIVRRVREHSPTTVIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L++   T A +GSYN  +GVPLT+ R  +D    + E+G  H+G 
Sbjct: 119 GSAGKTTTKDLLAALLATQGPTVAPVGSYNGEVGVPLTVFRAELDTRSLVVEMGADHVGN 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I +L  +VRP I V+  +  AH  +F G+  IA  K E+ E L   G   LN DD     
Sbjct: 179 IAYLCDIVRPDIGVVLMVGTAHAGSFGGVANIARTKGELVEALGPDGVAVLNLDDERVAG 238

Query: 235 LKAKSHALGIKTI----------------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + A++ A                       + G     D +    ++      +      
Sbjct: 239 MAARTAAPITWFTADERGVARAAEDVAAGRASGLVAARDVRADDQERPLFDLQVGTDEAA 298

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V     G H   N+L           D     + L    P      R         
Sbjct: 299 VRHPVASGLTGLHHVHNVLAAAAAAHAAGMDPAEIARGLDGLGP--ASRFRMERTDRADG 356

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+I+++YNANP SM+AA+  L+ +      R  AVLG+M E+G+     H  + E +  
Sbjct: 357 VTIINDAYNANPESMRAALRTLATLGRSSGRRTWAVLGEMLELGDARVREHTLVGESVVR 416

Query: 399 YNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            NI+ + + G     L              H+ +       F+   L  GD+V+VKSSN 
Sbjct: 417 LNIAQLLVVGAGARPLYIGALNEGSWGEEAHFVDDAAQAEAFLTEHLRPGDLVLVKSSNG 476

Query: 455 CGF----YRLINL 463
            G      RL   
Sbjct: 477 VGLAALGERLATA 489


>gi|87199151|ref|YP_496408.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134832|gb|ABD25574.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 489

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 169/480 (35%), Positives = 236/480 (49%), Gaps = 34/480 (7%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            LWT  ++  A  G +        V+G+ IDSR +   + FFA+KG + DGH ++  A  
Sbjct: 21  ALWTSEEIAAATGGRASAPFA---VSGVEIDSREVVEGDLFFALKGENSDGHRYLEGAFG 77

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   VV             P   V +   AL  L  AAR R  A II +TGS GKT  
Sbjct: 78  RGAAGAVVEHACFG-------PHVLVSNTSTALEDLGKAARNRVDAGIIGVTGSAGKTGV 130

Query: 123 KEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           KE L  AL      + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  LT 
Sbjct: 131 KEALYAALDRASRGRAHRSVKSYNNHVGVPLSLARMPARTSFGVFEMGMNHAGELAALTR 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LVRPH+A++TTIAPAH+ +F+G E IA AKAEIFEGLE  G   +  D+  FE L+AK+ 
Sbjct: 191 LVRPHVAIVTTIAPAHIGHFAGEEAIADAKAEIFEGLEPGGVAIIPADNRHFEHLRAKAT 250

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L  + + SFG +K+A  +L           +     G                   + +
Sbjct: 251 -LHAERVISFGVAKDATVRLLDAVPAPGGGTLVTADLGGRKVCYTIAQPGEHWVANSLAV 309

Query: 301 GIV-SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF----FTLIDESYNANPASMKA 355
                 +  D+  A  AL+      GRG R+    + G       LIDESYNANPASM  
Sbjct: 310 MAAVEAIGGDLGAAGLALAEMEGLAGRGARHAIPAHGGDGSGSALLIDESYNANPASMAV 369

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +  L Q        R+A+LG M E+G     +H +LA  ++   +  + L G  + AL 
Sbjct: 370 TLRQLGQTPAAR---RVAILGAMRELGADEARYHAELAGPVAEGKVDRLILVGGEMTALA 426

Query: 416 DALPRSIHVHYSETMDGLFLFIQSS-----------LVDGDVVVVKSSNSCGFYRLINLL 464
           DAL +S     +  +D     +Q++           +  GD ++VK SNS G   L+  L
Sbjct: 427 DALGKSGSAALAGAID--VAHVQTAAEAAECLAADGVRGGDAILVKGSNSVGLGALVRSL 484


>gi|302875396|ref|YP_003844029.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|307688994|ref|ZP_07631440.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
 gi|302578253|gb|ADL52265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 453

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 103/473 (21%), Positives = 198/473 (41%), Gaps = 29/473 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDF-- 56
           M PL    ++ + + G  I       +  +S   R   + P+  +  +     D   +  
Sbjct: 1   MKPLK-ITEIAKVVGGKLINCNKDIILKSVST--RVFGVKPEYLYIYLTYSKSD---YNP 54

Query: 57  ---ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
              +  A++ GA  ++V            +P   V++   AL  L    R +    +IA+
Sbjct: 55  NPDVEQAIKNGAAAIMV-----PCKIDCKVPQIIVENTDTALRTLCKHYRKKFDIPVIAV 109

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKT+TK+++ + LS    T+  + + N+ IGVP+T  ++       + E+G+   G
Sbjct: 110 TGTSGKTSTKDLIALVLSERFNTHKTLSNVNDLIGVPMTTLQINDTHQISVIEIGLRSYG 169

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            I+    +VRP I VIT+I  AH+S+F   E I  AK E+    +K   + +N DD    
Sbjct: 170 HIKKGVDIVRPSIGVITSIGTAHISSFGSKENIMKAKMEVATYFDKNDILIINGDDPLLS 229

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +K K + +   ++   G+    D +        +    +   +G+         G H  
Sbjct: 230 TIKEKPYKIIRISLNGKGEYNAKDVR----DLGEKGVEFKCDYKGEEHLFKLKVPGIHNV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  + I  +   +VD   + +  F P   R    +   N     +I + Y +   SM
Sbjct: 286 YNAMFAIAIGDLFDIEVDDVKRGIVKFQPDNLRVNIVKMKNNAK---IILDCYTSELDSM 342

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           KA I+V   +   G  ++IAVLG M   G L++  H ++   +       +   G +   
Sbjct: 343 KAGINV---LKSFGGNKKIAVLGSMYGCGNLTEEIHREIGRYVI-GKCDILVTVGGNARY 398

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +     +   + ET +    ++++ +   DV+++         ++ N LL+
Sbjct: 399 INEEAKDKLEGKHCETKEEACSYLKNIIQKDDVILINGGRILKLEQIANYLLQ 451


>gi|115350513|ref|YP_772352.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Burkholderia ambifaria AMMD]
 gi|115280501|gb|ABI86018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia ambifaria AMMD]
          Length = 468

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 113/476 (23%), Positives = 194/476 (40%), Gaps = 27/476 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G ++   P      +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGATVHGDPDTTFERVSTDSRTVGPGDLFVALKGDRFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRSKATIIAITGSVG 118
             +           + +     + +  V+  +   AL  LA   R R    ++A+TGS G
Sbjct: 60  AAR------GAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFAVPLVAVTGSNG 113

Query: 119 KTTTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           KTT KEM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE 
Sbjct: 114 KTTVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSGAHRVAVIELGMNHPGET 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L  P +A++      H    + +E +A   A +   L   G      DD++  + 
Sbjct: 174 EILARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALTPDGVAVFPADDAYASIW 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +    A     I  F           +         + +     ++ V    +G H A+N
Sbjct: 234 R---VAATGNPILDFALHDGERQVEAQVTGRLHGGELAIDTPSGAVTVRLRALGEHNARN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMK 354
            L           ++    + L  F P +GR +  +    +    T++D++YNANP SM+
Sbjct: 291 ALAAAAAALAAGIELAAIKQGLESFEPVKGRLQVRQADVGSLAGATVVDDTYNANPDSMR 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+         R+ V+GDM E+G+   +FH ++        I  ++  G      
Sbjct: 351 AAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCGFYRLINLLLEE 467
             A   +    +   +  L   + ++         V+VK S      R+++ L  +
Sbjct: 407 CTAYGDTAR--HFGDVGALLTALLAAGYGAQA--TVLVKGSRYMKMERVVDALTNQ 458


>gi|313673687|ref|YP_004051798.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,6-diamin
           opimelate/d-alanyl-d-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940443|gb|ADR19635.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 446

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/438 (26%), Positives = 201/438 (45%), Gaps = 24/438 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+IDSR +     FFA KG   DGH +I  A+ KGA   V+      +    + P+  V 
Sbjct: 26  ITIDSRDVKEGSIFFAFKGEKTDGHLYIEQAISKGAVCCVI---TDENYYDANKPLVLVK 82

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L A+ +L      +     I ITGSVGKT+TK +L++ LS   K Y    ++NN +GV
Sbjct: 83  DTLYAMRELGRWNLGKFNGKKIVITGSVGKTSTKAILSLVLSQKLKIYEAFKNFNNELGV 142

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +  + + +   + IFE+G ++ GEI+ L+  ++P + +IT +  +H+  F  ++EI   
Sbjct: 143 AIVTSNIDLGAQYAIFEIGTNNPGEIKSLSEFLQPDVGIITGVGHSHIGRFGSLKEITKE 202

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I EG++K G +++N          +  +      +  FG SK++D  + +     E 
Sbjct: 203 KLAISEGVKKDGVLWINDGVDT-----SYYNFPEGINVKKFGFSKDSDIYIEELNVEKEV 257

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +++      +      +    H A N L  + +        +   + L  F P EGRG  
Sbjct: 258 NFIVNFNNFRYC-FRINHPFSHFAVNALPAIALAFENQFHYEEIYRGLDKFVPVEGRG-- 314

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               +      +I+++YNA   ++ +A+  LS+I    +   IA+LG+M E+    +  +
Sbjct: 315 --EIIRTQNKIIINDTYNAGFEAVLSAVENLSKIDAPKK---IAILGEMAEIDGFEEKLY 369

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-V 448
             L   +   N  + +L G              +V Y +    L     + ++ GD V +
Sbjct: 370 SRLKNEVEKRNDIYFYLVGESFKD----FQSLENVSYFKDKSELIN---ADILKGDGVYL 422

Query: 449 VKSSNSCGFYRLINLLLE 466
           VK+S S  F  L+  L +
Sbjct: 423 VKASRSKRFEELVEYLKK 440


>gi|261879587|ref|ZP_06006014.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
 gi|270333818|gb|EFA44604.1| Mur ligase domain protein/alanine racemase [Prevotella bergensis
           DSM 17361]
          Length = 825

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 190/471 (40%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G   +  +  +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MT--YTIEKVATLIGARRYGK-HKADIGFLLTDSRSLCFPEETLFFALKTKRNDGHNYIA 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV +                V D L AL +LA   R      I+ ITGS 
Sbjct: 58  DLYRRGVRNFVVTDVPNNYDSAYSGANFLKVIDTLEALQRLAERHRDAFDIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   +S          SYN+ +GVPL++  M      GIFE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLMSPDMYVTRSPRSYNSQVGVPLSVWLMDKQTRLGIFEAGISEKGEMSA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF   EE    KA +F       TI  + DD     + A
Sbjct: 178 LRDIIQPTIAVLTNLGSAHQENFESAEEKCREKAILFH---DAKTIVYHADDKIVAGVVA 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                G +  +S    +   +     K+ +  +   +   G         I      N +
Sbjct: 235 SLDYRGERLYWSTSDRQAPMYIKAVEKKETAATITYIYKGGIENWYSIPFIDDASVTNSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   I   L  D D   + +    P      R      +   TLI++SYN++  S+  A+
Sbjct: 295 VCATIALHLGLDADKLDERMLQLEPV---AMRLEVKEGRHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   RR  +L D+ + G      + D+ E+ +   +  +   G  + +  D 
Sbjct: 352 DFMNRRPDHQGRRRTLILSDIFQSGVEPARLYRDVGELAAKRGVEKLIGIGPSISSYADE 411

Query: 418 LPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      +   T+       +   L   +V+++K +   GF R+  LL+++
Sbjct: 412 IHTQEK-YCFSTVADFIHSPVFKGLR-NEVILLKGARRFGFDRITELLVQK 460


>gi|238022298|ref|ZP_04602724.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
 gi|237866912|gb|EEP67954.1| hypothetical protein GCWU000324_02205 [Kingella oralis ATCC 51147]
          Length = 450

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 128/455 (28%), Positives = 202/455 (44%), Gaps = 23/455 (5%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               I     +N I+ DSR+    + FFA+ G ++D HDF+   + KGA  VV   D  +
Sbjct: 14  RLPEIATDSPINQITTDSRTAQRGDLFFALVGENHDAHDFVPDVLAKGATAVVSRGDCAS 73

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             G        VDD L AL  LA A R +    +  ITGS GKTT KEML   L +    
Sbjct: 74  FSG-----CLKVDDTLAALQTLAAAWRKQLNPFVYGITGSSGKTTVKEMLASILRTAHGA 128

Query: 137 Y---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               A  G++NNHIG+PLTL  +       + E+GM+H GE+  LT +  P++A++    
Sbjct: 129 DAVLATAGNFNNHIGLPLTLLNLREPHRHAVIEMGMNHAGELATLTRIAAPNVALVNNAM 188

Query: 194 PAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            AH+   F+G+++IA AKAEI++GL + G   L  +D    + +A    +      +FG 
Sbjct: 189 RAHIGCGFNGVDDIARAKAEIYQGLPENGIAILPAEDDHLAIFQA---TVSAFKTLTFG- 244

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +   D         +  S  ++   G    V     G H   N      +          
Sbjct: 245 ATVGDVHAENIALEALSSTFDLVYNGNRQAVQLPVAGKHNISNACAAAALAIAGGLRQPE 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L+ F   +GR    +         ++D++YNANP SMKAA+ VL+++       R+
Sbjct: 305 IARGLAAFSNIKGR---LQRKNGIRQTLILDDTYNANPDSMKAALDVLAKLPA----PRV 357

Query: 373 AVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
            V+GDM E+GE  +   H ++        I + +  G + +   +      +  +    D
Sbjct: 358 FVMGDMGELGEDEAPKMHEEIGIYARDLGIEYAYFVGDNSVQAAEKF--GGNGLWFADKD 415

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L   +   L +   V+VK S       ++  LL 
Sbjct: 416 PLIQVLAHDLPERASVLVKGSRFMQMEEVVAALLA 450


>gi|157413027|ref|YP_001483893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387602|gb|ABV50307.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Prochlorococcus marinus str. MIT 9215]
          Length = 457

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 191/465 (41%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           ++  +L   +    +             ISIDSR+    + F AIKG ++DGH FI   +
Sbjct: 3   FSLSELNDVLGNIRNLRESKSDFLSFKNISIDSRTFLKNDLFIAIKGKNFDGHSFIPEVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            KG   VV+    +  +   + P + V+D   A  KLA+  R +    I+AITGSVGKTT
Sbjct: 63  NKGVKSVVI-KKGMQRLLPSNFPYWAVNDTTEAFQKLALLKRKKLNIPIVAITGSVGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEM+   L+ + +      ++NN IGV LT+    ++    + E+GM  LG+I  L+  
Sbjct: 122 TKEMIGGVLNKLGRIKLSHANFNNEIGVGLTILATDIEDKVLVLEMGMRGLGQIENLSKY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT I  AH+      + I  AK EI + L   G + +  +D F E    +S  
Sbjct: 182 SEPDIAVITNIGTAHIGLLGSKKNITHAKCEISKFLNPEGVVIIPANDPFLEKTLKESWK 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +         +   +        +  +  +  +         G+H A N L    
Sbjct: 242 GRVIKVKLLNIENQEEIFKKDDNLRGFYNPSKKTILIEENTFEISLEGFHNASNFLFAYA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L       I   S               L     T+ DESYNA+P S+KA I  L 
Sbjct: 302 VSKELG------IDFASFNKFDFVSFGGRNKILKSLKTTIYDESYNASPESVKACIKNL- 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALP 419
                    +  + G M E+G+ S+ +H ++  +++  +I          +     + L 
Sbjct: 355 ---LEKPRNKFFIFGSMQELGKESEKYHKEIFNLINNSDIEKCLFICEKKNEKNYTNYLK 411

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                     +  +   I  S   GD +++K S      ++I L+
Sbjct: 412 DKKKFLVLNNIKDVPQEINKSTKKGDSILIKGSRCWQLEKIIELI 456


>gi|221194353|ref|ZP_03567410.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
 gi|221185257|gb|EEE17647.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium rimae ATCC 49626]
          Length = 478

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 133/479 (27%), Positives = 213/479 (44%), Gaps = 24/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  D++++     +    +     + IDSR +     F A  G   DG+ +I  A
Sbjct: 1   MICM-SARDVVESTGAMLLVEGKRPLAGEVEIDSRRVGEGSLFVAFAGEKVDGNSYIDAA 59

Query: 61  VQKGAGLVVVN----TDMVASIGSLSIPVFGV--DDVLGALNKLAVAARL-RSKATIIAI 113
           +  GA +V  +       +     +   +     DD    L +LA A R      T++A+
Sbjct: 60  LDAGAAVVCASVEPAQATLEHARRVDATLLRAEGDDCEEFLLRLAGAWRALHQDWTVVAV 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKTTTK+ML   +++ ++ +A  G++NN IG+P+T+   P D +  + E GM+H G
Sbjct: 120 TGSVGKTTTKDMLRAGIATQRRVHATAGNHNNLIGLPMTILSAPKDAEVLVCECGMNHKG 179

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN----YDD 229
           EI  LT   RP IAVIT +  +H+      E IA AKAEI EG+E  G I          
Sbjct: 180 EILRLTRCCRPTIAVITNVGTSHIGLLGSRENIACAKAEIVEGMEAHGDIRPTLILESGG 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHG 287
            F   +  K        +   G       + +      E   +   V   G    V    
Sbjct: 240 DFTSFVSEKFARPKGIDVVCVGSHAGDILRAQDVTVGEESLPTATFVTQDGWKKTVTFSV 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     + LM L  +++L  D D A+ A++   P   R              +ID+SYN
Sbjct: 300 PGRVAVSDALMALEAITLLGLDRDMALDAIATMPPTRMRLSVLHAV---CGARIIDDSYN 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A+P+SM AA+ VLS++     GRRIA+LG++ E+G+  +  H  +   ++   I  V   
Sbjct: 357 ASPSSMAAALDVLSRMP--TRGRRIAILGEIGELGQEEKRLHGYVGAYVAAKPIDLVVFV 414

Query: 408 GFH-VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           G      + +A          +   E+++ +   I   L D D V+VK+S + G    +
Sbjct: 415 GKDAAREMAEAAKTMGLSEDAIELVESVEDVMKIIPPILKDTDTVLVKASRAAGLDAFV 473


>gi|78046383|ref|YP_362558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034813|emb|CAJ22458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 503

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 201/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V+      + +LS+P   VD+   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VARGASGVLVDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  +  ++   +  +G   +A+   R+ +  +  +   +       ++     G H  
Sbjct: 234 EQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAQIALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+      GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIADGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-----------VDGD----------------- 445
              A      V    T   L   +Q+ L             G                  
Sbjct: 407 AAQAFGEGARV--FATHAELIDALQADLVDATSQRQQVPQHGSGNTQEHAVIHQQQSPST 464

Query: 446 ---------VVVVKSSNSCGFYRLINLLLE 466
                     +++K S      R++  LL 
Sbjct: 465 NALPGVASITILIKGSRGSAMDRVVTALLA 494


>gi|304382932|ref|ZP_07365414.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
 gi|304335957|gb|EFM02205.1| Mur ligase domain protein/alanine racemase [Prevotella marshii DSM
           16973]
          Length = 824

 Score =  207 bits (525), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 183/469 (39%), Gaps = 12/469 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      +  I  DSRS+    +  FFA+K    DGH +I 
Sbjct: 1   MI--YTIDRITTLINAERYGEA-DARIGFILTDSRSLCFPEETLFFALKSDRNDGHRYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++G     V     +S          V D L AL  LA   R      II ITGS G
Sbjct: 58  ELYRRGVRNFAVEVLPDSSSSYTDANFLKVADTLKALQMLAKKHRETFHIPIIGITGSNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L   +       SYN+ IGVPL++  +  +   G+FE G+S   E+  L
Sbjct: 118 KTMVKEWLYQLLMPERFVTRSPRSYNSQIGVPLSVWLLNENTQIGLFEAGISRPKEMDAL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++RP I V+TTI  AH  NF+ IEE    K  +F   +       N        L ++
Sbjct: 178 REIIRPTIGVLTTIGTAHQENFASIEEKCREKLRLFRHAQTIVYCTDNA---LTARLISE 234

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G    +S        +  R  KQ    +           +     I     +N + 
Sbjct: 235 ESLEGEPIAWSTKDENAQLYVSRIEKQAEHTTVSYRYKNHIEGQYTLPFIDDASVENSIT 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L        K ++   P      R      Q   TLI++SYN++  S+  A+ 
Sbjct: 295 CTAVALYLGIAPAALAKRMAHLEPV---AMRLEVKEGQHGCTLINDSYNSDIHSLDIALD 351

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +++   H   +R  +L D+ + G      + +++ + +   +      G  + A  D++
Sbjct: 352 FMNRRPDHKGRKRTLILSDIEQTGRKPADLYREVSHLAAKRRVEKFIGIGRQLCAHADSI 411

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    + +    +       L   +V+++K +   GF RL +LL+++
Sbjct: 412 GITDKCFFPDCESFIHSEAFDKLR-NEVILIKGARRFGFDRLTDLLVKK 459


>gi|300726819|ref|ZP_07060249.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
 gi|299775932|gb|EFI72512.1| Mur ligase domain protein/alanine racemase [Prevotella bryantii
           B14]
          Length = 824

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 113/471 (23%), Positives = 197/471 (41%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      V  I  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MI--YTIEKVTTLIGARRYG-DRDCNVGFILTDSRSLCFPEETLFFALKSERNDGHNYIA 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV +     +          V + L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYRRGVRNFVVSDVPNNFASDYPDANFLRVVNTLEALQRLAERHRDEFNIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +    + GIFE G+S  GE+  
Sbjct: 118 GKTIVKEWLYQLLSDDMYVTRSPRSYNSQIGVPLSVWLLNKQTEIGIFEAGISEPGEMLA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF   E     K  +F   +         DD        
Sbjct: 178 LRDIIQPTIAVLTNLGSAHQENFKSKEAKCREKLILFHDAKTIVYNM---DDEIINDTVE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +  G K  +SF K+  A   ++  ++    + +    + K  + +   I      N +
Sbjct: 235 SYNYSGEKITWSF-KNPKATMFIKSVEKRKNDTVINYNFKDKEGKYILPFIDEASISNSI 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   +   L    D   + ++   P      R    + Q   TLI++SYN++  S+  A+
Sbjct: 294 ICAIVTLCLGVSTDVLSRRMAKLEPV---AMRLEVKVGQHGCTLINDSYNSDVNSLDIAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + GE  ++ + D++++     +      G  + A  D 
Sbjct: 351 DFMNRRPDHKGRRHTLILSDIFQSGEKPENLYRDVSDLAYKRGVVKFIGVGPELKAHADQ 410

Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +       +  +++ L    +  SL   +V+++K +   GF ++  LL+++
Sbjct: 411 IQIPEKF-FFSSVEQLINSEVFRSLR-DEVILIKGARQFGFDQITELLVQK 459


>gi|88811842|ref|ZP_01127095.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
 gi|88790726|gb|EAR21840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Nitrococcus
           mobilis Nb-231]
          Length = 453

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 138/470 (29%), Positives = 201/470 (42%), Gaps = 25/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ + +   L+  + GH  G  P   V G ++DSR I   E F A+ G   DGHD++   
Sbjct: 1   MDAV-SLSRLVADLGGHLRG--PDTEVIGAALDSRRIRSGELFVALTGSRADGHDYLSA- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-IIAITGSVGK 119
               A        ++       +P + V D  G L  L    R    AT I+A+TGS GK
Sbjct: 57  ----ARTAGAAAALLERAVPEPLPQWIVADGRGTLAALGCWVREHCAATQIVAVTGSNGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT KEML   L+    T A  G+YNN +GVPLTL R+     + + ELG S  G+IR LT
Sbjct: 113 TTVKEMLAAILARHGATLATSGNYNNELGVPLTLCRLQRRHRYAVLELGASAPGQIRRLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             VRP + VIT   PAHL  F  +  +A  K E+FE L   G   +N DD+F  L +   
Sbjct: 173 QWVRPSVGVITNAGPAHLDGFGSVAGVARGKGELFETLPDDGIAVINVDDAFANLWQR-- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                +   +FG     D +       +    +E++  G+ + V    +G H   N L +
Sbjct: 231 -LARPRRCITFGL----DRRAEVRATTAADGQLELRWDGRVLPVRLPLLGRHNQLNALAS 285

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 L          L    P  GR              ++D++YNANPAS+ AAI V
Sbjct: 286 AATALALELPGAAIRAGLEAMRPVPGRLCWREGIGG---ARILDDTYNANPASLAAAIRV 342

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+        RR  VLGDM E+GE +   H    ++     +  +++ G    A      
Sbjct: 343 LA----ENSQRRWLVLGDMAELGETAGRLHRRAGQLARAGGVERLFVIGELAAASAAGFG 398

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                   +  + L   +   L     V++K S S     + + L  + P
Sbjct: 399 LG--AECFDDREALVKALSGGLGPDIAVLIKGSRSAAMDIVADRLAADKP 446


>gi|319949798|ref|ZP_08023821.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
 gi|319436538|gb|EFV91635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Dietzia cinnamea P4]
          Length = 500

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 135/498 (27%), Positives = 207/498 (41%), Gaps = 36/498 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++   + G  +G  P   V G +  DSR + P   F A+ G   DGHDF+  
Sbjct: 1   MIDL-TLGEIAGIVGGRLVGGDPSTAVTGTVEFDSRRLTPGGLFLALPGERVDGHDFVAR 59

Query: 60  -----------AVQ----KGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                      A +     GA +VV  V+     ++   +        VL AL  LA A+
Sbjct: 60  ALDAGAAGALVAHEVDGVDGAQIVVPAVDRRETNAMALAADTDGSGAAVLTALGALARAS 119

Query: 103 RLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
             R        ++ +TGS GKT+TK+++   LS+     A  GS+NN IG P T  R   
Sbjct: 120 VDRLVADHGLVVVGVTGSSGKTSTKDLIGAVLSAAGTVVAPPGSFNNEIGHPWTALRADE 179

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D DF + EL     G IR L  L  P I V+  +  AHL  F   E IA+ K E+ E L 
Sbjct: 180 DTDFLVLELSARAPGNIRELAALAPPRIGVVLNVGTAHLGEFGSREVIAATKGELVEALP 239

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQ 277
                 +   ++  + + A         + + G   +AD +    +   E ++   +   
Sbjct: 240 DAAHGGVAVLNADDDRVAA-MAGRTSAEVVTVGLGGSADVRAEGVRLDDEVRASFTLVTP 298

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               EV     G H   N L    +      DV+    AL        R    R  +   
Sbjct: 299 RGEAEVALRVHGEHQVGNALSAAAVGLACGMDVERIAAALGTAEAASERRMDVR--VTAD 356

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRR---IAVLGDMCEMGELSQSFHIDLAE 394
             T+I++SYNANP SM+AA+  L+ ++  G GR     AVLG+M E+GE +   H  +  
Sbjct: 357 GITVINDSYNANPDSMRAALKSLAVMARSGGGRPRRTWAVLGEMAELGEDAVIEHDLIGR 416

Query: 395 VLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L   ++S + +   G    A+               +  T +     + S L  GD+V+
Sbjct: 417 FLVRLDVSQLVVVGLGRPQRAMFQGAIQEGSWGSEAEHVATAEEAVEILDSRLEPGDIVL 476

Query: 449 VKSSNSCGFYRLINLLLE 466
           VK+S + G + +   +L 
Sbjct: 477 VKASAAVGLWSVAEHVLA 494


>gi|299142150|ref|ZP_07035283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
 gi|298576239|gb|EFI48112.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           oris C735]
          Length = 438

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 119/440 (27%), Positives = 192/440 (43%), Gaps = 22/440 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR+      F A+KG  +DG+ F   A+ KG    +++    A   +    +  VD
Sbjct: 16  ITTNSRNCPKDSIFLALKGASFDGNKFAKTALDKGCAYAIIDEPAFAEADND--RLILVD 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L    KLA   R R    +I ITG+ GKTTTKE+++  L+         G++NN +GV
Sbjct: 74  DCLTTFKKLAREHRRRFNIPVIGITGTNGKTTTKELVSAVLAERYNVMHTEGNFNNDVGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+    +  + E+G SH G+I  L     P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLFRLNATHEIAVVEMGASHPGDIEKLVTYAEPTCGLITNVGRAHLLGFGSFEGVKQT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L+    +     +     L   +    +  I ++G+S +A+ +          
Sbjct: 194 KGELYDYLKAHDCLLF--LNESNADLVDMACQREMNRIITYGQSDDANVRGEVIDCAPFL 251

Query: 270 SWMEVQ-----LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +          + ++ EV  H IG +   NML  + I        +    AL  + P  
Sbjct: 252 HFSWTDLSTTESKARTYEVESHLIGAYNIDNMLAAITIGLHFGVTPEQINHALESYVPAN 311

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +    A N+    LI ++YNANP+SM AAI     ++      ++A+LGDM E+GE+
Sbjct: 312 NRSQLEVTAKNK----LIVDAYNANPSSMAAAIENFKLMNVE---HKMAILGDMRELGEV 364

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S+  H  L + L       VWL G           +         +D +   I +   + 
Sbjct: 365 SELEHQKLVDKLQADGFQEVWLVGEEFGKTHTNFRK------FRNVDEVKAEIAAHCPEN 418

Query: 445 DVVVVKSSNSCGFYRLINLL 464
             +++K SN    Y L  LL
Sbjct: 419 CYILIKGSNGIKLYELPELL 438


>gi|237739352|ref|ZP_04569833.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
 gi|229422960|gb|EEO38007.1| histidinol-phosphatase [Fusobacterium sp. 2_1_31]
          Length = 609

 Score =  207 bits (525), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 113/441 (25%), Positives = 200/441 (45%), Gaps = 35/441 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDIADER 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D +  +  LA   R +    +I ITGS GKT+TK+++   LS   KT    G+YN
Sbjct: 248 IVKVADTIATMQDLATKYRNKLDIQVIGITGSNGKTSTKDIVYSLLSKKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISNPDYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E + K  T     D    +L   K            G +++ +F +  ++
Sbjct: 368 NVFKAKTELLEFVNKENTFVCGDDVYLAKLDVNK-----------IGFNEDNNFIIESYE 416

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + S   +  +    E     +G H   N  + + +   +    +   + L       
Sbjct: 417 FSDKGSKFTLDGK----EYEMSLLGKHNISNTAIAIELAKKIGLSEEEIKEGLKDIKISS 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  R   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIRVGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGED 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+++   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EVKYHVEVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586

Query: 441 LVDGDVVVVKSSNSCGFYRLI 461
            ++  V+++K+S       +I
Sbjct: 587 RMEK-VILLKASRGTALEDII 606


>gi|87303659|ref|ZP_01086434.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
 gi|87281764|gb|EAQ73729.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. WH 5701]
          Length = 478

 Score =  206 bits (524), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 113/449 (25%), Positives = 176/449 (39%), Gaps = 23/449 (5%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD------M 74
                  + I  DSR + P   F  + G  +DGH F+  A+++GA  V+   D       
Sbjct: 19  ADQAASFSRIGTDSRELEPGCLFVPLVGERFDGHGFLAAALEQGALAVLAQRDRLSAEQA 78

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
            A + S    ++ VDD   A  +L    R +  A +IA+TGS GKTTT+E++   LS + 
Sbjct: 79  EALVRSSGGRIWLVDDTQAAYQELGRLWRRQGSAPVIAVTGSAGKTTTRELIRAVLSPLG 138

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              A +G+ NN IGVPLTL +   +    + E+GM  LGEI  L+    P I VIT I  
Sbjct: 139 PVLASVGNENNDIGVPLTLLKAGGEHRAVVVEMGMRGLGEIERLSRCAEPDITVITNIGT 198

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL-----LKAKSHALGIKTIYS 249
           AH+      E IA+AK EI   L   G + +   D   E         +   + ++   +
Sbjct: 199 AHIGRLGSREAIATAKCEIVAALRPDGLVVIPAGDPLLEASLAAVWSGRVIRVALQDDPT 258

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +      +LR         W   +   +         G H A+N+L+ L + S L  D
Sbjct: 259 GPQPGQLLGRLRAGTDGDRLIWGRAEPGAREHSTELPLPGRHNARNLLLALAVASELGVD 318

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +          R  R              E  +    +   A+     +     G
Sbjct: 319 PLQLSRLEVALPGGRSRRIRLGEI----------EVLDETYNASPEAMLAALDLLASQGG 368

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYS 427
           RR A LG M E+GE S   H  + E      +  + +   G    AL         +   
Sbjct: 369 RRFAALGTMLELGEQSTELHRRVGERARALGLDGLVIVAGGAEGEALLAGAAGLPRLQRV 428

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           ++ +     +   L  GD +++K+S    
Sbjct: 429 DSPEDAAQTLLGWLEPGDHLLLKASRGVA 457


>gi|260495144|ref|ZP_05815272.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
 gi|260197201|gb|EEW94720.1| histidinol-phosphatase [Fusobacterium sp. 3_1_33]
          Length = 609

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/443 (27%), Positives = 208/443 (46%), Gaps = 35/443 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LVV +     +       
Sbjct: 197 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVVAD-----NTNIKDKR 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS+  KT    G+YN
Sbjct: 248 VVKVIDTIATMQDLATKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSTKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D+   +L   K            G ++N D+++  ++
Sbjct: 368 NVFKAKTELLEFVDKKNTFVCGDDEYLGKLDVNK-----------VGFNENNDYKIESYE 416

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ S   +  +    E     +G H   N  +T+ +   +    +   K L       
Sbjct: 417 FSNKGSKFVLDGK----EYEMSLLGKHNISNTAITIELAKKIGLTDEEIQKGLKEIKISN 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
             ++HID+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 527 EINYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKNI 586

Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463
            ++  V+++K+S       +I L
Sbjct: 587 KMEK-VILLKASRGTALEDIIKL 608


>gi|68535821|ref|YP_250526.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
 gi|68263420|emb|CAI36908.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium jeikeium K411]
          Length = 504

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 135/500 (27%), Positives = 202/500 (40%), Gaps = 38/500 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +      I    PQ  V G +  DSR I P   F A+ G   DGHDF  
Sbjct: 1   MIELTT-QKIAEVSGSTLINDVDPQAVVTGPVEFDSRKITPGAIFMALPGARADGHDFAD 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--------------LNKLAVAARL 104
            A+  GA L++V    V     L+ PV   +    A              L  +   AR 
Sbjct: 60  AALNSGAALLIVGRP-VEQPALLAAPVEINEQTSNATAFEFDAEGHGAAVLAAIDKLARY 118

Query: 105 RSK-------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            +          ++ +TGS GKT+TK+++   L    +T A  GS+NN IG+P T  R  
Sbjct: 119 NTDVLAAEEGMVVVGVTGSAGKTSTKDLIGAVLREAGETVAPPGSFNNEIGLPYTALRAG 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  F + E+    +G I+ LT +  P + V+  +  AHL  F   + IA AK E+ E L
Sbjct: 179 RDTRFLVSEMSARGVGHIQHLTTVTPPRVGVVLNVGSAHLGEFGSRQAIAQAKGELVEAL 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF--------GKSKNADFQLRKWKQCSEQ 269
                  L   ++  + + A       + +           G   +      +    +  
Sbjct: 239 PAAADGGLAVLNADDDKVAAMDKRTAARVVRFSTEGATGAAGVPADYYATDIELDAVARA 298

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S+M     G+ + V     G H   N L    +   +  D  T    LS           
Sbjct: 299 SFMLHHPVGEPVRVELSVFGAHQVSNALAAAAVGIEMGIDAATVASLLSSHVAASVNRMD 358

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-SPHGEGRRIAVLGDMCEMGELSQSF 388
            R        T+I++SYNANP SM+A I  L+       +    AVLG M E+GE +   
Sbjct: 359 VRTR-ESDGVTIINDSYNANPESMRAGIDALAYTAKGRRDAASWAVLGQMGELGEDASDE 417

Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
           H +L  VL+   I H  + G   +  AL +A     +     E +DG   ++  SL   D
Sbjct: 418 HAELGHVLAQRRIDHAVIVGNGVNQRALANAARESGVETQVVENIDGAVNYLDMSLNPQD 477

Query: 446 VVVVKSSNSCGFYRLINLLL 465
           VV++K+S S G + +   LL
Sbjct: 478 VVLIKASYSDGLWAVAEGLL 497


>gi|225463627|ref|XP_002271742.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 771

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/476 (28%), Positives = 213/476 (44%), Gaps = 33/476 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI-LHA 60
           +PLWT  ++ +A+ G  +   P G +     D+R++ P + FFAI+G ++D H+FI    
Sbjct: 310 SPLWTVDEIAEAVNGTIVQRGPPGPI---CTDTRTLEPGQWFFAIRGENFDAHEFITPEL 366

Query: 61  VQKGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             KG   V+        +   V   G            L +L K+A  AR +    ++ +
Sbjct: 367 GHKGCVGVIGNWVCPNWDKGFVEMGGE----------TLTSLEKMANYARNKFHGCLVGV 416

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTT+ M+ + L S+   +   G+ NN IGV L+L  +P +V F + ELGM   G
Sbjct: 417 TGSAGKTTTRTMIALTLESLGLVHQTHGNENNRIGVCLSLIGIPQNVGFVVLELGMDRRG 476

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  L    RP I VI  +  AHL NF+ +EE+A AK EI    +      LN DD    
Sbjct: 477 EIMELARKARPSIRVILNVGCAHLENFASLEEVAMAKGEILAEAKPGDVCVLNADDPLVM 536

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHM 292
            L              FG+    D +    K        + ++   + +E V    G H+
Sbjct: 537 SL----PVPHGVKKVLFGQRLECDVRFAAEKVHGGHGVRVVLERNHEKVEFVIPSPGLHL 592

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           AQN   T  +   L   +     +LS F P      R    + +    +I++ YNANP S
Sbjct: 593 AQNACATAAVAVALGVSLPQVGISLSRFIPVS---MRSELEVAKTGIKIINDVYNANPVS 649

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            KAAI +L  I    +G+R+A+LGDM E+G+     H  +  +    +   + L G   L
Sbjct: 650 TKAAIELLKNI--DCKGKRVAILGDMLELGQAETVSHEMMLSLCCDSHFDLIALVGKRFL 707

Query: 413 ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + L      ++ YS   + L   I   L   DV++VK S      +++  +  
Sbjct: 708 RAAENLNLVGERNLLYSPDAESLAFEIVQRLNRNDVILVKGSRGMQMEKVVAAIKA 763


>gi|320093979|ref|ZP_08025806.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979085|gb|EFW10601.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 468

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 132/468 (28%), Positives = 198/468 (42%), Gaps = 13/468 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +   + +A +G   G  P    NG +  DSR  AP   + A +G + DGHD++  A + G
Sbjct: 4   SATWIAEATRGVVHG--PDVSANGPVVTDSREAAPGGVYVARRGENADGHDYVASAARAG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKT 120
           A   +V   +V       I    V D  GAL  LA A     +      ++A+TGSVGKT
Sbjct: 62  AVCALVER-VVDLSDCPPITQVVVGDATGALGDLARAHLEALRAGGAIDVVAVTGSVGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTK++L   LS+   T A   S+NN +G+PLT+          + E+G S  G I +LT 
Sbjct: 121 TTKDLLLQVLSADAPTVAPRLSFNNEVGLPLTVLTADESTRHLVLEMGASGPGHIAYLTR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A+   +  AH+  F  +  +A AKAE+ EG  +  T  LN DD     +  +  
Sbjct: 181 IAPPDVAIELVVGHAHMGGFGSVAGVAEAKAELIEGSRQGATAVLNADDPNVAAMAPR-- 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G    +S                 + ++   +        V    +G H   N L   
Sbjct: 239 AKGPVVRFSPSGVGADVVAEDVRVDAAGRASFTLAAPEGREPVSLSLVGAHHVANALAAA 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRC-ALNQGFFTLIDESYNANPASMKAAISV 359
                L   +    +ALS            R   +     TLID+SYNAN  SM+AA++ 
Sbjct: 299 AGARALGLGLPLIARALSGARALSPHRMDVRGLRIGAVPLTLIDDSYNANIDSMRAAVAA 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  I      R IAVL +M E+GE S + H  +  +LS   +  +   G       +   
Sbjct: 359 LEAI--GKGRRTIAVLSEMLELGEDSPATHRAVGAMLSGAGVDALIGLGRDAHYYSEGAA 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   E        +   L D  VV+VK S +   +++ + LLEE
Sbjct: 417 SVPDRVLVEDPGAALAAVLDRLTDDCVVLVKGSYNSYSWQVADGLLEE 464


>gi|159045011|ref|YP_001533805.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912771|gb|ABV94204.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 479

 Score =  206 bits (524), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 170/453 (37%), Positives = 235/453 (51%), Gaps = 14/453 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+SID+R +AP + F A+     DGHDF+  A+  GAG  +V+   +    +   
Sbjct: 21  DWAVTGVSIDTRELAPGDLFVALTAAR-DGHDFVAQALAAGAGAALVSR--IPEGVAEDA 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+  V DV  AL  L  A R R++A +IAITGSVGKT+ KEM+  AL+S  + +A   S+
Sbjct: 78  PLLLVPDVQTALEALGRAGRARTEARVIAITGSVGKTSAKEMMRAALASQGRAHAAERSF 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNH GVPLTLARMP   +  + E+GM+H GEI  L  + RPH A+ITTIA AHL     +
Sbjct: 138 NNHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAALITTIAAAHLEALGSL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E IA  KA IFEGLE  G   +  D     +L+A +   G   I SFG       +L   
Sbjct: 198 EAIAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGA-RIESFGTGAGNTHRLSDV 256

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +     +    QL G  M +     G H  +  L  L  V+ + AD   A+ AL  + P 
Sbjct: 257 QAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVGADPARALMALGAWAPP 316

Query: 324 EGRGKRYR----CALNQGFFTLIDESYNANPASMKAAISVLSQISPH------GEGRRIA 373
            GRG R R      +      LID+++NANP SM AA+ +L+Q +P        +GRRIA
Sbjct: 317 SGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQAAPAHDIGRIAKGRRIA 376

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LGDM E+G    + H  LA   ++  I+ V   G  + AL  ALP      + ET   L
Sbjct: 377 ILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAALPEDKRGRWVETAQAL 436

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                + +  GDVV+VK S       +++ L +
Sbjct: 437 VPHAHALVDAGDVVLVKGSKGSRVSLVVDALRK 469


>gi|21241546|ref|NP_641128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106897|gb|AAM35664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 503

 Score =  206 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 199/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V       + +LS+P   VD+   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VARGASGVLVER----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L+          YA  G+ NN IG+PL +   P D D  I+E+G    G+I
Sbjct: 114 SVKALLLSILTEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPAGGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  +  ++   +  FG   +A+   R+ +     +   +       ++     G H  
Sbjct: 234 EQQLQSQPVQGRRVLRFGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+      GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI          +G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDA----LAAAQGEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSV 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|323699051|ref|ZP_08110963.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio sp. ND132]
 gi|323458983|gb|EGB14848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans ND132]
          Length = 462

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 113/464 (24%), Positives = 185/464 (39%), Gaps = 15/464 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T  ++ + +   +     +  V  +  DSR++ P + FF I G ++DGH+F   A
Sbjct: 1   MN--LTLAEVARCLGTLADEGFEETVVTEVKTDSRTVEPGDLFFCIAGENFDGHEFAALA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KGA  VV +      IG +  PV  V D   AL +LA   R    A ++A+TG+ GKT
Sbjct: 59  AAKGACAVVASR----MIGEIDAPVIMVRDTRTALGRLAACWRDTCGAKLVAVTGTAGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEML    S    T     ++NN IG+P ++ +   D +  I ELG+S  G++  L  
Sbjct: 115 TVKEMLFAVASQKFATAKNYRNFNNQIGLPTSMLKASADQELWIMELGISRRGDMEELAP 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P +A+IT + P HL        +ASAK  +   L + G   ++ D        A   
Sbjct: 175 VASPDLAIITNVGPGHLEGLGNEAGVASAKTALLRYLRQGGRAVISRDYPLL--WNAALE 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +     +S      +DF         +               +            L  +
Sbjct: 233 LVDAPVGFSGRDDAESDFSAAFLGALPDGRGRFRLRTPDGDGELTAPFCGRHYAENLACV 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              +         +         + +    +        T+ID++YNANP SM  A+   
Sbjct: 293 AAAAHCLGLTRDDVVGGVQAMAADPQRFCRKIGGG---ITVIDDTYNANPLSMANALRTA 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +++       + VLGDM E+G  +   H +L  V+     + V+  G H L ++     
Sbjct: 350 RELAGERP--LVLVLGDMRELGAEAVLRHEELGRVIRETAPAMVFYKGDHFLDVERGF-- 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +  +  +D      +   +    V+VK S S G     N L
Sbjct: 406 GGFMRRAGDVDEFLEAWRELCISEGAVLVKGSRSLGMELYANAL 449


>gi|330752175|emb|CBL87134.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 28/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+           I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE-----TMDQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++   +  T  +   D   +  K K H         FG   +      K    +E 
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSLQSEKTKDHN-------RFGFGHSKGGVTWKSTSDNEF 240

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++++ +G S  +     G+    N+     +       +     AL  + P   R + 
Sbjct: 241 ASIQLETKGNSTSIKSQLSGHFNESNLAAAATLGLHFDVPLKDIKTALEAYVPSMNRVEW 300

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+ S+  H
Sbjct: 301 RKTQYNA----VLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASKVEH 352

Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447
             +   +   +   +  L G H                 +T   L  F Q      D  +
Sbjct: 353 EAIVREVISLDMAQNCILIGEHFYD------CDFEGLKFKTTKHLIDFWQKKGAPRDASI 406

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      RL+  L
Sbjct: 407 LLKGSRGIALERLLPHL 423


>gi|296327768|ref|ZP_06870307.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155115|gb|EFG95893.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 613

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 114/443 (25%), Positives = 197/443 (44%), Gaps = 35/443 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +I      
Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NIDVKDER 251

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YN
Sbjct: 252 IIKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      +
Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E + K  T     D    E L             +  K ++  F  +  K
Sbjct: 372 NVFKAKTELLEFVIKENTFVCGDD----EYLAKLDVNKIGFNNSNTYKIESYKFSDKGSK 427

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +             E     +G H   N  + + +   +    +     L       
Sbjct: 428 FVLDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISN 476

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+ 
Sbjct: 477 MRFQEIKIGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKVAILGDMLELGDN 530

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +HID+   L    I  ++L G  +    +   +S        Y  T +G+   +++ 
Sbjct: 531 EIDYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNI 590

Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463
            ++  V+++K+S       +I L
Sbjct: 591 KMEK-VILLKASRGTALEDIIKL 612


>gi|19704793|ref|NP_604355.1| histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19715132|gb|AAL95654.1| Histidinol-phosphatase [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 613

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 196/443 (44%), Gaps = 35/443 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KGA LV+ +     +       
Sbjct: 201 VQIKNVVMDSRKVTEGSLFFAI----NNGNSYVKDVLDKGASLVIAD-----NTDVKDER 251

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D +  +  LA+  R +    ++ ITGS GKTTTK+++   LS   KT    G+YN
Sbjct: 252 IIKVSDTIATMQDLAIKYRKKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      +
Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E + K  T     D    + L             +  K ++  F  +  K
Sbjct: 372 NVFKAKTELLEFVNKENTFVCGDD----KYLAKLDVNKIGFNNSNTYKIESYKFSDKGSK 427

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +             E     +G H   N  + + +   +    +     L       
Sbjct: 428 FVLDG-----------KEYEMSLLGKHNISNTAIAIELAKKIGLTDEEIENGLKEIKISN 476

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  ++A+LGDM E+G+ 
Sbjct: 477 MRFQEIKIGED----IYINDAYNASPMSMKAAIDTLNEI--YNDKYKVAILGDMLELGDN 530

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +HID+   L    I  ++L G  +    +   +S        Y  T +G+   +++ 
Sbjct: 531 EIDYHIDVLNYLLDKKIKLIYLYGERMKKAYNMFMKSKSEEYRFWYYPTKEGIVESLKNI 590

Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463
            ++  V+++K+S       +I L
Sbjct: 591 KMEK-VILLKASRGTALEDIIKL 612


>gi|330752054|emb|CBL80565.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 423

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 119/437 (27%), Positives = 192/437 (43%), Gaps = 28/437 (6%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ D+R+I P   FFA+KG +++G+DF L A+ +GA   VV+           I +  V 
Sbjct: 13  VTTDTRNIIPGSVFFALKGTNFNGNDFALEALTQGARYAVVDE-----TMDQDIRIIQVS 67

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL AL   A + R      +  +TGS GKTT KE++   LS+  KT+A  G+ NNH+GV
Sbjct: 68  DVLEALQSCAKSWRNHLNIPVFGLTGSNGKTTNKELMHAVLSTKYKTHATFGNLNNHVGV 127

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLT+  M  D +  I E+G +H  EI  L  + +P I  IT    AH+  F G+E I   
Sbjct: 128 PLTILSMSKDTEIAIIEMGANHQLEIALLASISQPTIGYITNYGKAHMEGFGGLEGIIKG 187

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+++   +  T  +   D   +  K K H         FG   +      K    +E 
Sbjct: 188 KSELYDFAFEHQTQVMVNFDDSLQSEKTKDHN-------RFGFGHSKGGVTWKSTSDNEF 240

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + ++++ +G S  +     G+    N+     +       +     AL  + P   R + 
Sbjct: 241 ASIQLETKGNSTSIKSQLSGHFNESNLAAATTLGLHFDVPLKDIKTALEAYVPSMNRVEW 300

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N     ++ ++YNANP SM  +I    +    G    + +LGDM E+G+ S+  H
Sbjct: 301 RKTQYNA----VLMDAYNANPTSMSLSIQNFGKWHTSG----LMILGDMYELGKASKVEH 352

Query: 390 IDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-V 447
             +   +   +   +  L G H                 +T   L  F Q      D  +
Sbjct: 353 EAIVREVISLDMAQNCILIGEHFYD------CDFEGLKFKTTKHLIDFWQKKGAPRDASI 406

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      RL+  L
Sbjct: 407 LLKGSRGIALERLLPHL 423


>gi|50842241|ref|YP_055468.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|50839843|gb|AAT82510.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|315107074|gb|EFT79050.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA1]
          Length = 485

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 189/493 (38%), Gaps = 33/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +   + +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++     +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRLINLLLEEFPA 470
            R+   + EE  A
Sbjct: 471 ERVGREVFEEREA 483


>gi|325925690|ref|ZP_08187068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
 gi|325543906|gb|EGD15311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas perforans 91-118]
          Length = 503

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 200/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DTMIDAVGNDTRTLADGSLYVALRGERFDGHDFATEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+V+      + +LS+P   VD+   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VARGASGVLVDR----LLPALSVPQVVVDNTELALARIAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVARTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  +  ++   +  +G   +A+   R+ +  +  +   +        +     G H  
Sbjct: 234 EQQLQSQPVQGRRVLRYGLQASAEITARQLRLHTGGAQFTLVTPQGEAPIALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+      GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIADGLAQARAVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-----------VDGD----------------- 445
              A      V    T   L   +Q+ L             G                  
Sbjct: 407 AAHAFGEGGRV--FATHAELIDALQADLVDATSQQQQVPQHGSGNTQEHAVIHQQQSPST 464

Query: 446 ---------VVVVKSSNSCGFYRLINLLLE 466
                     +++K S      R++  LL 
Sbjct: 465 NALPGVASITILIKGSRGSAMDRVVTALLA 494


>gi|218129279|ref|ZP_03458083.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|317475248|ref|ZP_07934515.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
 gi|217988657|gb|EEC54977.1| hypothetical protein BACEGG_00856 [Bacteroides eggerthii DSM 20697]
 gi|316908701|gb|EFV30388.1| alanine racemase [Bacteroides eggerthii 1_2_48FAA]
          Length = 828

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 112/476 (23%), Positives = 200/476 (42%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T  ++ Q I    IG +    ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YTIENIAQIIGARRIGEL-SATIDWLLTDSRSLSFPEETLFFALATKRNDGARYIR 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPV-----FGVDDVLGALNKLAVAARLRSKATIIAI 113
               +G    VV+ + +    +L  P+       V   L AL KLA   R R +  +I I
Sbjct: 58  DLYARGVRNFVVSEEGLKEAEALGSPLPDLNLLVVPSPLKALQKLAEQHRDRFQIPVIGI 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  I E G+S  G
Sbjct: 118 TGSNGKTVVKEWLHQLLSPERVITRSPRSYNSQIGVPLSVWQMNEQTELAILEAGISEPG 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N DD F  
Sbjct: 178 EMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALF---KDCDVVIYNGDDEFIS 234

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +KS     +  +S  +       + K ++    + +  +            I     
Sbjct: 235 NCVSKSIFSAREIAWSR-RDMERPLYINKVEKQENSTVISYRYLDMDNTFTLPFIDDASI 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L  L     L        + ++   P      R      +    LI++SYN++  S+
Sbjct: 294 ENSLNCLAACLYLMLPAGQITERMAKLEPV---AMRLEVKEGKNGCLLINDSYNSDLGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  L + S     +R  +L D+ E G+ + + +  +A++++   I  V   G  + +
Sbjct: 351 DIALDFLYRRSQSKGLKRTLILSDILETGQNTPTLYRQVAQLVNSRGIERVIGVGNEISS 410

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQS--SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  +I   +      L   I      ++ +++++K +   GF  L  +L  +
Sbjct: 411 CASRF--NIEKAFYPDTAALIDAIGKGELSLENEIILIKGARKFGFDALTEVLERK 464


>gi|260593152|ref|ZP_05858610.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
 gi|260534860|gb|EEX17477.1| Mur ligase domain protein/alanine racemase [Prevotella veroralis
           F0319]
          Length = 826

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 112/471 (23%), Positives = 191/471 (40%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G   +  ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYGTK-EANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV                  V   L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYARGVRNFVVEVVPDNWETLYSGSNFLKVVGSLEALQRLAERHRDEFLIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNENTQVGVFEAGISKPGEMMA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V T++  AH  NF  IE     K  +F   +         DD       A
Sbjct: 178 LRDIIQPTIGVFTSLGTAHQENFPSIEAKCKEKLCLFHDTQAIVYSM---DDDVLTHCLA 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +  G +  +S   +    +     K+  E +       GK  +     I     +N +
Sbjct: 235 QYNYQGEQLSWSTKHTDATFYIKSIEKKDIETTVTYTWKGGKEAQYKLPFIDDASVENSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L        + ++   P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TCAVVALHLGVTQAALAERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDYNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   +R  +L D+ + GE  +  +  +A +     +      G  +LA ++A
Sbjct: 352 DFMNRRPDHKGRKRTLILSDILQSGEDDKELYNKVAFLCEKRGVDKFIGIGEGLLAERNA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  H+  T++      + ++L   +V+++K +   GF  L  LL+++
Sbjct: 412 FKHLGEKHFFATINAFIHSEVFANLH-DEVILLKGARQFGFDHLTELLVKK 461


>gi|152967147|ref|YP_001362931.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361664|gb|ABS04667.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 487

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 128/475 (26%), Positives = 198/475 (41%), Gaps = 20/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ +   G          V G + +DSR+  P   F A+ G   DG D    
Sbjct: 1   MIAL-TAAEVAELTGGRLAAGTASTPVTGPVVVDSRAAGPGSLFVALPGERVDGADHAAG 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-----IIAIT 114
           AV  GA LV+   ++          +  V+D + AL +LA     R ++T     ++ +T
Sbjct: 60  AVAAGASLVLAEREVE---LPAGAALVVVEDGVTALGRLARGVLERLRSTGSGPLVVGVT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTK++L   L+      A  GS+NN IG PLT+ R        + E+G   LG 
Sbjct: 117 GSQGKTTTKDLLARVLAPAGPVVAPAGSFNNEIGAPLTVLRADRGTVTLVVEMGARGLGH 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + RP + V   +  AH   F  +E  A AK E+ E L   G   LN DD     
Sbjct: 177 IAALCAIARPDVGVELVVGAAHAGEFGSLETTARAKGELVEALPAEGLAVLNADDDRVAA 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  ++ A     + +FG+  +AD +    +  +  +     LQ            +   Q
Sbjct: 237 MATRTRA----RVLTFGRGAHADVRALDVELDA-LARPRFTLQHGGGRARVQLQLHGEHQ 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                      L         A S+    E    R +        T++ ++YNANP SM+
Sbjct: 292 VTNALAAAAVALGTGRPLEEVAASLSAATELSPGRMQVVERPDGVTVVHDAYNANPDSMR 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AA+  L  ++     R  AVLG+M E+G  S+  H  L   +   ++  + + G     +
Sbjct: 352 AALKALVGMAG-AGRRTWAVLGEMLELGPASREEHDLLGRTVVRLDVDQLLVVGAGARPV 410

Query: 415 KDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                          ++  +D    F+++ L  GDVV+VKSSN  G  RL   L+
Sbjct: 411 YTGAVMEGSWGEEAAFATDVDDALEFLRARLRPGDVVLVKSSNGAGLARLATTLI 465


>gi|269978141|ref|ZP_06185091.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|306818514|ref|ZP_07452237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|269933650|gb|EEZ90234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris 28-1]
 gi|304648687|gb|EFM45989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 483

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/489 (25%), Positives = 206/489 (42%), Gaps = 32/489 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T   L + +            + G ++ DSR I   + F A+ G H DGH F+  
Sbjct: 1   MIDM-TIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGS 57

Query: 60  AVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
             ++G  + VV          D         + +  VDD   AL K+A A   + ++   
Sbjct: 58  VARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRAR 117

Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D +
Sbjct: 118 NGSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG
Sbjct: 178 YLVLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN DD   E +  ++       +  F   K    +    K  S+ S     L   + 
Sbjct: 238 VAILNADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAG 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +                         A + T   A ++ H       R           L
Sbjct: 293 KAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADGVDL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID++YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I
Sbjct: 353 IDDAYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGI 410

Query: 402 SHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +   G     +     AL      H++         +Q  +   D++++K S+    +
Sbjct: 411 PVLIGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLW 470

Query: 459 RLINLLLEE 467
           +L   + E 
Sbjct: 471 KLAQSIEER 479


>gi|78212659|ref|YP_381438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Synechococcus sp. CC9605]
 gi|78197118|gb|ABB34883.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Synechococcus sp. CC9605]
          Length = 449

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 185/468 (39%), Gaps = 26/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    T   L+  + G + G    P   +  +  DSR +   + F  + G  +DGH F+ 
Sbjct: 1   MT--LTLRQLMD-VWGTTQGGRLEPDALLGRVCTDSRQLQAGDFFVPLVGERFDGHHFLE 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              +  A   VV+      +    +  + VDD L A  +LA+  R      ++A+TGS G
Sbjct: 58  QLPEHKAQAAVVSRCWAEPLPP-DLLHWRVDDTLLAYQQLALLHRRALGKPLVAVTGSAG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+E++  AL+ +    A  G+ NN +GVPLT+          + E+GM  LGEI  L
Sbjct: 117 KTTTRELIRAALAPLGAIQASEGNNNNDVGVPLTVLGATAADAALVIEMGMRGLGEIERL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++   P +AVIT I  AH+      E IA+AK EI  GL   GT+ +   D   E   + 
Sbjct: 177 SYCTEPDLAVITNIGTAHIGRLGSREAIAAAKCEITAGLHPQGTVVIPAGDPLLESALSA 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +  +  +                +  S+        Q                    +
Sbjct: 237 VWSGRVLRVRL----------ADDPEVESDLVGDINGDQLLIDADRLPLQLEGRHNARNL 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +       V              GR +R +        TL+DE+YN    +   A+ 
Sbjct: 287 LLAVAVADQLGVSRRALQAIQVTVPGGRNRRLQQGG----LTLLDETYN----ASPEAVL 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKD 416
               +     GRR AVLG M E+G+ S   H ++A       +  + L   G    A+ +
Sbjct: 339 AALDLLAAQPGRRFAVLGTMLELGDRSLELHQEVAARAVQLGLDGLVLVDGGAEGKAMAE 398

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 H+      +     + + L  GD +++K+S      RL+ LL
Sbjct: 399 VAASLPHLQLVSNPEDAAAPLAAWLEAGDFLLLKASRGVALERLMPLL 446


>gi|256825481|ref|YP_003149441.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
 gi|256688874|gb|ACV06676.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Kytococcus sedentarius DSM 20547]
          Length = 475

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/474 (25%), Positives = 194/474 (40%), Gaps = 28/474 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T   L Q + G   G   +  + G +  DSR       + A +G   DGHDF+  
Sbjct: 1   MIQLTT-RQLAQVVGGTLAG-DGELVLTGPVVTDSRLAEAGSLYVARRGESADGHDFVEA 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVG 118
           A+  GA   +   ++             V DV  A  +LA           ++A+TGS G
Sbjct: 59  ALGNGAVASLAEREVPG-------TYVLVPDVQEAFARLARWMVDELPDLQVVAVTGSSG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+TK++L   L+    T A I SYN+ +GVPLT+ R+    ++ + E+G S  G I +L
Sbjct: 112 KTSTKDLLGQVLAEAGPTIAPIESYNSEVGVPLTVCRIEPTTEYLVAEMGASGPGHIAYL 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T +  P + ++  +  AHL  F   + IA  KA I EGL   G   LN DD     +  +
Sbjct: 172 TAIAPPRVGIVLNVGSAHLGGFGSQQGIADTKAAIVEGLPADGLAVLNADDPLVAAMSER 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKW-------KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             +  ++           D  +  W       +    +  + V+ QG +     H     
Sbjct: 232 VTSGEVQYFSLDADRAVRDESVTAWAEDLALDEAGRARFTVAVRGQGGTERHPVHLRVRG 291

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                     ++++    VDTA    ++   +     R           +I++ YNANP 
Sbjct: 292 AHMAANALAVLLAVRHVGVDTADAVAALSRAEAISRWRMEVTERPDGVMVINDGYNANPE 351

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406
           SM+AA++ L  ++     R  AVL  M E+G  S + H ++    +   +  V +     
Sbjct: 352 SMRAALTALRDMAH--GRRTWAVLAGMLELGPDSAARHREVGRHAAEVGVDVVLVVGDTA 409

Query: 407 --SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
              G  V  +  A  +   V       +     ++  LVD DVV+ KSS   G 
Sbjct: 410 APIGEGVHDVSTAAGQDGPVVISVHDSEEARSVLEDQLVDQDVVLFKSSRDSGM 463


>gi|269215881|ref|ZP_06159735.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
 gi|269130831|gb|EEZ61907.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Slackia
           exigua ATCC 700122]
          Length = 473

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 136/472 (28%), Positives = 206/472 (43%), Gaps = 19/472 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           ++    ++ I    +         V+ I+ DSR++    AF A+KG   DGHDF   A+ 
Sbjct: 3   FSIETAVRRIGARIVVEPSSPLSRVSSITWDSRAVEQGGAFLALKGARVDGHDFAGAAIA 62

Query: 63  KGAGLVVVNTDMVAS----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA LV+V  D+              +  V D   AL+ LA A R    A ++ +TGSVG
Sbjct: 63  AGAALVIVTDDLPEQALAFAREAGCCIARVPDAQQALSALASAWREELSAHVVGVTGSVG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT+ +    LS+  KT +  G++NN +G+PLT+   P D +  + E+GM   G+I  L
Sbjct: 123 KTTTRGLAAQVLSARFKTESTKGNFNNELGLPLTVLTAPKDCEALVVEMGMDGRGQIARL 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK-- 236
             + RP  A+IT +  AHL      E IA AKAEI E L     +     D  F      
Sbjct: 183 AAVARPERAIITNVGTAHLEYLGTRENIARAKAEIAEALPDGEGVAFLAADGEFTDFIIE 242

Query: 237 -AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
            A+    GI+ +   G+   +D    +    +E      +  QG+S        G H  Q
Sbjct: 243 HARLAERGIRVVRFGGEGHASDVYATEVAFDAEGRPTFVLHAQGESCACALKLRGAHNVQ 302

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N      I       +     AL+    + GR    R       + L+D++YNA+P SM 
Sbjct: 303 NACGAAAIGLSYGMSLPDVCHALAGAQAQAGRQALLRMPEG---YRLLDDAYNASPESMA 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A++SVLS  S    G RIAVLGDM E+G  S + H  +   ++   I  +   G     +
Sbjct: 360 ASLSVLSSFS--TSGSRIAVLGDMGELGSASDAGHDSVGRAVAGAKIDALICVGPKSRRI 417

Query: 415 KDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             A   +      +   +        +   +   DVV+ K+S+  G  +L  
Sbjct: 418 AHAARAAGMDPARIQEVDDAGAAREALSRIVRADDVVLAKASHCMGLSKLAE 469


>gi|307700756|ref|ZP_07637781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
 gi|307613751|gb|EFN92995.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris FB024-16]
          Length = 483

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 123/489 (25%), Positives = 206/489 (42%), Gaps = 32/489 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T   L + +            + G ++ DSR I   + F A+ G H DGH F+  
Sbjct: 1   MIDM-TIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGS 57

Query: 60  AVQKGAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-- 109
             ++G  + VV          D         + +  VDD   AL K+A A   + ++   
Sbjct: 58  VARRGGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRAR 117

Query: 110 --------IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D +
Sbjct: 118 NGSGKLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG
Sbjct: 178 YLVLEMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN DD   E +  ++       +  F   K    +    K  S+ S     L   + 
Sbjct: 238 VAILNADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAG 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +                         A + T   A ++ H       R           L
Sbjct: 293 KAQVEMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDL 352

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID++YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I
Sbjct: 353 IDDAYNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGI 410

Query: 402 SHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             +   G     +     AL      H++         +Q  +   D++++K S+    +
Sbjct: 411 PVLIGVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLW 470

Query: 459 RLINLLLEE 467
           +L   + E 
Sbjct: 471 KLAQSIEER 479


>gi|314967016|gb|EFT11115.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA2]
 gi|314980972|gb|EFT25066.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA3]
 gi|315091703|gb|EFT63679.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA4]
 gi|315103163|gb|EFT75139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA2]
 gi|327327836|gb|EGE69612.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL103PA1]
          Length = 485

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 118/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++     +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRL 460
            R+
Sbjct: 471 ERV 473


>gi|89890158|ref|ZP_01201669.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
 gi|89518431|gb|EAS21087.1| UDP-N-acetylmuramoyl-tripeptide (MurF) [Flavobacteria bacterium
           BBFL7]
          Length = 417

 Score =  205 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 195/438 (44%), Gaps = 32/438 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+  D+R I   + F+A+ G ++DG++++  A+ KGA   V +     +  S+++    
Sbjct: 12  KGVQTDTRKIENGQLFYALSGENFDGNEYVEQALTKGAIHAVSSDHKWKNNPSVTV---- 67

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D L  L  LA   R      II++TGS GKTTTKE++   L         +G+ NNHI
Sbjct: 68  VEDPLKNLQALATYHRKALDIPIISLTGSNGKTTTKELILSVLGQQFNVKGTLGNLNNHI 127

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLT+       + G+ E+G +HL EI  L+ +  P   +IT    AHL  F   + I 
Sbjct: 128 GVPLTILSFDKSTEIGVVEMGANHLKEIEKLSTIALPDYGLITNYGKAHLEGFGSEKNII 187

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E+FE L+  G   +       +L +++     I +  S                  
Sbjct: 188 IGKSELFEHLKAHGKTAIVGHWDQEQLKRSQGIERFITSTDSKLI--------------- 232

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++   + L+ +  +     IG +   NML+   +  I      + +  LS + P     
Sbjct: 233 -KAEPYISLEFEGQKSDTQLIGEYNYHNMLLAAAVGQIFNMSTTSILNGLSQYTP----N 287

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +      +I ++YNANP+SM      LS +S   E  +IAVLGDM E+G+ S++
Sbjct: 288 NNRSQIIQSDNVKIILDAYNANPSSMSV---ALSNLSKQKESHKIAVLGDMFELGKYSKT 344

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + ++     +   +L G     +     ++ H      ++      + +  +  V+
Sbjct: 345 EHQKIVDLTKQLGLDQTYLIGESFSQV-----QTSHALLFNNLESFKKTFKINRNEDAVL 399

Query: 448 VVKSSNSCGFYRLINLLL 465
           ++K S      R+++L  
Sbjct: 400 LIKGSRGMALERILDLFQ 417


>gi|315093063|gb|EFT65039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL060PA1]
          Length = 485

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 118/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAYQVANAVAATAAALAAWAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++     +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRL 460
            R+
Sbjct: 471 ERV 473


>gi|311103997|ref|YP_003976850.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758686|gb|ADP14135.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 951

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 21/440 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + G+S D+R I   E F A+ G ++D H+++  A  +GA        +  ++    +P  
Sbjct: 512 IKGVSTDTRRIGQGELFVALVGENFDAHNYLDQAEARGACA----AVVAHAVPDAKLPQL 567

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143
            + D   AL ++  A R +    ++A+TGS GKTTTKEM++             A  G+ 
Sbjct: 568 VLGDTRIALMRIGAAWRAQFALPVVAVTGSNGKTTTKEMISAMLAEWQGEAGRLATAGNL 627

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P +A++T     H      +
Sbjct: 628 NNDIGVPLTLLRLRPEHRAAVFELGMNHPGEIAQLAAIAAPTVALVTNAQREHQEFMHSV 687

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A         L + G      D+ +  +  A       + +  FG     D    + 
Sbjct: 688 EAVAHENGAAIAALPEDGVAVYPGDEPYSAIWDA---LAEPRRVLRFGLQPGLDVYAEQI 744

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +   V       ++     G H  +N L  +       A ++ A++ALS F P 
Sbjct: 745 LADVHATRCRVVTPMGVADLTLPVPGLHNLRNALAAIASAIAAGAPLEGAVRALSGFSPV 804

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR    +         LID++YNANP S++ A+ VL++++    G+R+ VLGDM E+G+
Sbjct: 805 AGR---MQHKHMSDGTLLIDDTYNANPDSVRVAVDVLARMA----GKRVLVLGDMGEVGD 857

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H+++        +      G    A   A     H     ++D +   ++     
Sbjct: 858 NGPAMHVEVGNYAREQGLDAFITLGEASRAAAAAFGVGAHA--CASVDEVVAALRGLRAS 915

Query: 444 GDVVVVKSSNSCGFYRLINL 463
              V++K S      R++  
Sbjct: 916 --CVLIKGSRFMRMERVVTA 933



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 165/487 (33%), Gaps = 49/487 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+ T  + +  +               + +DSR I P + F A  G   DG  +I  A+
Sbjct: 9   NPVATVAETVAWLHSRVSLTA------HLKLDSRDIEPGDVFVACPGLSSDGRLYIEKAL 62

Query: 62  QKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
             GA  V+     +   +  +   P+  V  +   L +LA     R      ++A+TG+ 
Sbjct: 63  ALGASAVLFEAPANDAVAAVADQAPMLPVTGLRALLGELADTWYGRPSAELAVVAVTGTN 122

Query: 118 GKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDVDF 162
           GKT++ + +  ALS   K                +    +  P             D   
Sbjct: 123 GKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGA 182

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               +  S +G  +     VR  +A  T +   HL     +E   +AKA +F     T  
Sbjct: 183 KAVAMEASSIGIEQGRMDGVRVALAAFTNLTRDHLDYHGTMERYEAAKARLFRWPGLTAA 242

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D++   L+      + +    S      A  + R  +  ++     +       +
Sbjct: 243 VINADDEAGRRLIAGLPAGMAMGYSLSADPEIPAGMRARDLQATAQGQIFTLVSPHGEAQ 302

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL- 341
           +V   +G H   N+L+  G++  L        + L+   P +GR +      +       
Sbjct: 303 IVTRLLGAHNVSNLLLVAGVLYQLGLPFAQIARELAATDPVDGRLQTVEPVAHSTQAATG 362

Query: 342 ----IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +   Y   P ++  A+S L  ++    GR I + G     GE       ++  + +
Sbjct: 363 RGALVVVDYAHTPDALARALSALRAVATARSGRLICLFG---CGGERDPGKRPEMGRIAA 419

Query: 398 LYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFIQSSLV------DGDV 446
                HV +S  +       A+ + +   I       +       ++ +         DV
Sbjct: 420 DL-ADHVVVSSDNPRTESPEAIVEQILAGIPDSVRPDVQ--VDRARAIMQTIWAAAPDDV 476

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 477 VLLAGKG 483


>gi|288927757|ref|ZP_06421604.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330591|gb|EFC69175.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 825

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 199/465 (42%), Gaps = 13/465 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              +   I    +G   +  ++ +  DSRS+    +  FFA++    DGH++I    ++G
Sbjct: 5   IERVATLIGAQRLGNA-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYISELYRRG 63

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV      A+          V     AL +LA   R      I+ ITGS GKT  K
Sbjct: 64  VRCFVVEEVPARAAELFGDANFLCVRSTRQALQRLAQRHREAFNIPIVGITGSNGKTMVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ IGVPL++  +      GIFE G+S  GE++ L  +++
Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGIFEAGISQKGEMQALHDIIK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+IAV+T I  AH  NF+  EE    K  +FEG E    +  N DD     +  +++  G
Sbjct: 184 PNIAVLTNIGSAHEENFATPEEKCREKLRLFEGAE---VMVYNADDDLVTRVLNETNNKG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  +S      A F  +  KQ +  +   +   G+        I      N ++   I 
Sbjct: 241 ERLAWSTKSPNAAMFVTKIDKQPTHTTIHYIYKGGQPASYSLPFIDDASVCNSVVCATIC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +  D  T  K +    P      R          TLI++SYN++  S+  A+  +++ 
Sbjct: 301 LHVGLDAHTIDKRMRRLEPV---AMRLEVKEGLNGCTLINDSYNSDINSLDIALDFMNRR 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H   +R  VL D+ + G      + +++ +     +      G  + A K+++  +  
Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYKEVSSLAEQRGVQKFIGIGPKICANKESIRLAER 417

Query: 424 VHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            H+  +++      +   L   +VV++K + S GF +L  L++++
Sbjct: 418 -HFFASVEDFIRSDVFKGLR-NEVVLLKGARSFGFDQLTELMVKK 460


>gi|195953735|ref|YP_002122025.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933347|gb|ACG58047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 446

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/472 (23%), Positives = 205/472 (43%), Gaps = 34/472 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L    ++ +++    I      F+  +  DSR       F AIKG   DGH +I + 
Sbjct: 1   MNSL----EVSKSLG--LIHEGKPFFIKDVFFDSRESIKDALFVAIKGEKTDGHLYIKNL 54

Query: 61  VQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + +     +V  D     I +         D + AL  +A   R   KA ++AI GS GK
Sbjct: 55  LDENIAGFLVREDFDCKEILAKGKSCLKAKDTIKALQDIASLKRNSLKANVVAIAGSAGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE++   L           ++N+ IG+P  +     D+ + + E+G + L +++ LT
Sbjct: 115 TTTKELIAHVLPGKVHKTY--KNFNSQIGLPKVVITADDDIGYLVLEMGATALEDVKKLT 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++ + HI VI++I   HL +F  IE +     E+F+       ++     SF++      
Sbjct: 173 NIAKQHIGVISSIGEEHLESFGSIENVVKGNFEVFDSPNLLSGVYPKAFHSFYK------ 226

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  +       +AD +++      E +      +   + +    +   +A++    
Sbjct: 227 ---KEYGLSFCRFRDDADIRVKNVYIDEEGT----HFEIMGIRLTIPVLSIGIAESAAAA 279

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G+++    D          F   +GR +  +    +G F +ID++YNANP S+K AI  
Sbjct: 280 VGVLASFGIDWKELKDRFESFKGVQGRMQLIK----KGPFRIIDDTYNANPVSVKNAILT 335

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +       +   I VLGDM EMGE S++ H  +  +L   +I++V+L G  +    D L 
Sbjct: 336 IDSFKDFNK---IIVLGDMLEMGEYSKALHEKVGAMLKSSHINNVYLYGSDMKYAYDVLK 392

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466
             +  V Y +  + L   +  SL        +++VK S       +++ L+ 
Sbjct: 393 LSNKEVFYFDNQEELSFHLVKSLKQKTDTNTMILVKGSRGMKMENVVDRLVN 444


>gi|289663640|ref|ZP_06485221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. vasculorum NCPPB702]
          Length = 503

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 128/510 (25%), Positives = 204/510 (40%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V+      + +LS+P   V++   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVDR----LLPALSVPQVVVENTELALARVAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P + DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDNADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++   I  +G   +AD   R+ +  +  +   +       +V     G H  
Sbjct: 234 EQQLLAQPVQGRRILRYGLQISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPST 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|150025456|ref|YP_001296282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771997|emb|CAL43473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 427

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 193/437 (44%), Gaps = 23/437 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             +S D+R I     F A+KG ++D + F   A+ KGA  V+++     +       +  
Sbjct: 14  TSVSTDTRKIENNSLFIALKGDNFDANTFAEEAISKGALFVIIDDKKHHTNKD---KMIL 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D L  L +LA   R +    IIA+TGS GKTTTKE++ + LS      A IG+ NNHI
Sbjct: 71  VLDSLQTLQELAKYHRQQLGLPIIALTGSNGKTTTKELINVVLSKKYNAKATIGNLNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     D D GI E+G +H  EI  L  +  P+   IT    AHL  F GI+ + 
Sbjct: 131 GVPLTLLSFDEDTDIGIVEMGANHQKEIELLCSIAEPNFGYITNFGKAHLEGFGGIDGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK+E++  LE+         D   +           +      +   +  +    K   
Sbjct: 191 KAKSELYNYLEENKQTAFVNLDDEIQ----------NQKTMQIMRYSFSIAKESDVKIDF 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   V++  K M++  H IG + A N+   + I        D    A+  + P   R 
Sbjct: 241 VVANPMVEINYKKMKIKSHLIGLYNANNISAAIAIGKYFNIADDDIKDAIQNYIPTNNRS 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      N     +I ++YNANP+SM+AAI+   Q+    +   IA+LGDM E+G  S  
Sbjct: 301 QLIEKNSNN----IILDAYNANPSSMEAAITNFIQLKAKDK---IAILGDMFELGNDSLI 353

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + E+         +  G       + +    ++H+ +T +      ++     + +
Sbjct: 354 EHKKIIELFINGPEIETYFIGKDF--YCNKI-EMKNIHFFDTYESFSKSFKTRKTSKNTI 410

Query: 448 VVKSSNSCGFYRLINLL 464
           ++K S      R + +L
Sbjct: 411 LIKGSRGMSLERTLEIL 427


>gi|315077551|gb|EFT49609.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA2]
          Length = 485

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 123/493 (24%), Positives = 190/493 (38%), Gaps = 33/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R    IIA+TGS
Sbjct: 59  QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRIIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +         + R +AVLGDM E+G+ S   + +   + +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++G    +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRLINLLLEEFPA 470
            R+   + EE  A
Sbjct: 471 ERVGREVFEEREA 483


>gi|312880222|ref|ZP_07740022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783513|gb|EFQ23911.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ineligase
           [Aminomonas paucivorans DSM 12260]
          Length = 467

 Score =  205 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 121/463 (26%), Positives = 186/463 (40%), Gaps = 13/463 (2%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H++     G + G       + +  DSR + P   F A+ G   DGH F+  AV  GA  
Sbjct: 9   HEVAALFGGGAEGPDRPFPFS-VCYDSREVTPGCVFAALPGERTDGHRFVGDAVAGGASA 67

Query: 68  VVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           V+           +  GS  +    VD V  AL  LA   R R    +  ITGSVGKTTT
Sbjct: 68  VLALRGPGREARASLPGSADVAWVFVDSVEDALVTLARQWRERVAPKVYGITGSVGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++++   L+S++ ++    SYN  IG   T+  MP D    + E G +H GEI  L    
Sbjct: 128 RDLILRVLASVEPSHGAPKSYNTRIGCASTVLGMPPDTRNLVLEYGTNHPGEISALVASF 187

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P    +T + PAHL     ++ + +AK E+ E  +     +   +    + L A   A 
Sbjct: 188 PPQELFLTEVCPAHLEGLGDVQGVLAAKLELLESRQAERVTYNFDNALLRDALHASFSAE 247

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               +   G     +    +W        + ++  G+S        G   A        +
Sbjct: 248 RSLGVGVSGGEVRIERAEPRWTSKGPVLDLHLREAGRSWSFASRLWGRQHAYAWAFAWSV 307

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                   +   +      P  GR    R   ++    ++DE+YNANPASM  A+  L  
Sbjct: 308 ALRRGVGEEALREVAETSLPLPGR---GRVLSDREGLWILDETYNANPASMGVALENLHL 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S  G G   A+LG M E+GE S  +H ++   L    +    L G     L+  LP   
Sbjct: 365 LSSQGAGVSWAILGGMRELGETSPHWHREILGKL--RGVDGAVLVGEEWAPLRSDLPD-- 420

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V +      L       L    ++++K S S G  RL+ L  
Sbjct: 421 QVRWVPDTAVLLEEGGPVLPKHALLLLKGSRSYGLERLLPLFR 463


>gi|314923249|gb|EFS87080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL001PA1]
          Length = 485

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 117/483 (24%), Positives = 184/483 (38%), Gaps = 33/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++     +       DV+++K+S     
Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVILLKASRGLAL 470

Query: 458 YRL 460
            R+
Sbjct: 471 ERV 473


>gi|157364635|ref|YP_001471402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
 gi|157315239|gb|ABV34338.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Thermotoga
           lettingae TMO]
          Length = 422

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 108/440 (24%), Positives = 183/440 (41%), Gaps = 25/440 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +   +DSR + P   F AIKG   DGH +   A+ KGA  VV    +          +  
Sbjct: 5   SRFVVDSRQVTPGCVFVAIKGEKTDGHFYANEAINKGAAYVVAEKKLQHIPEE---KLIT 61

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+D +  L   A     +    +I ITGS GKTTTKE+L   L    + +   G+ N  I
Sbjct: 62  VNDTIEFLLSNAREKLKKHNPVVIGITGSNGKTTTKELLYQLLGK-DRAFRNPGNLNTEI 120

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL++        F I E+ M+  G+I  L  +  PH+A++  +  AH       E I 
Sbjct: 121 GLPLSILNEYNAEKFAILEMAMNKFGDIARLCQIAMPHVAILLNVGTAHRGIAGNQEMIL 180

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K ++ E ++K GT  + YD    + +  K        + +FG  K  D+QL  +    
Sbjct: 181 RGKLQLIENMQKNGTAIVLYDKKLLDRISLK-------PMVTFG-YKKGDYQLVDYCYID 232

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +    +   + +      I        +  +     +          L  F P  GR 
Sbjct: 233 FSTKAFYKTPREQLIFNLKSIWNAGQLTNISAVLAALDILGIDC-NKNILENFTPVAGRF 291

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +N     ++D++YNA+  S + A+  + ++      R  AV+G + E G+ S  
Sbjct: 292 ----RVMNCNGIYVVDDTYNASIESFETAVETIKKL----GKRSFAVVGSIKEQGKYSIE 343

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  L E+L    +  V +         + +  S  +  S +   +  F++  L+ GDVV
Sbjct: 344 THRKLGEIL--EKLDGVVVYNVDNEI--EIMNCSKKIFASNSATEISDFLKRILIPGDVV 399

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           + K+S S    +++ +  EE
Sbjct: 400 LFKASRSVQIEKVLQIYTEE 419


>gi|294627721|ref|ZP_06706303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292598073|gb|EFF42228.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 11122]
          Length = 503

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 124/510 (24%), Positives = 200/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLADGSLYVALRGERFDGHDFAAEA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  V+V+      + +LS+P   V++   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VACGASGVLVDR----LLPALSVPQVVVNNTELALARIAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D D  I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  +  ++   +  +G   +A+   R+ +     +   +       ++     G H  
Sbjct: 234 EQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEAQIALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+   P  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQARPVAGRQIAQTLPNG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQEHAVNQEQQSPSV 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGATPITILVKGSRGSAMDRVVTALLA 494


>gi|227875252|ref|ZP_03993394.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
 gi|227844157|gb|EEJ54324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mobiluncus mulieris ATCC 35243]
          Length = 480

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 204/485 (42%), Gaps = 31/485 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L + +            + G ++ DSR I   + F A+ G H DGH F+    ++
Sbjct: 1   MTIDALREIVG--LEPGTNSTRIQGTVNTDSRFIEAGDVFVALPGEHTDGHCFLGSVARR 58

Query: 64  GAGLVVVNT--------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT------ 109
           G  + VV          D         + +  VDD   AL K+A A   + ++       
Sbjct: 59  GGKVAVVTKNRDEILAQDWATEEELGKLILLQVDDAQIALGKIAQAHLEQLRSRARNGSG 118

Query: 110 ----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +I ITGS GKTTTK++    LS+  KT A  GS+NN IG+PLT+ +   D ++ + 
Sbjct: 119 KLKLVIGITGSAGKTTTKDLARQLLSAKGKTVAPPGSFNNEIGLPLTVLQADSDTEYLVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S  G++++LT +    +AV+  +  AHL ++  ++ +A+ K++I   L  TG   L
Sbjct: 179 EMGASKPGDLKYLTAIAPLDVAVVLMVGTAHLESYDSVDALAAEKSQIITSLGPTGVAIL 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E +  ++       +  F   K    +    K  S+ S     L   + +   
Sbjct: 239 NADDPRVEAMSGRT----AGRLIYFSSQKATGVRATHLKVDSD-SHASFTLHTPAGKAQV 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                                 A + T   A ++ H       R           LID++
Sbjct: 294 EMQLIGAHHVSNALAAAAIAHVAGMATHEIAAALHHATPQSEHRMHLVHLADAVDLIDDA 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP S+KAA+ VLS+ +     R +AVLGDM E+G  +   H ++    +   I  + 
Sbjct: 354 YNANPDSVKAALDVLSKYAAS--RRVVAVLGDMLELGVAAPQLHGEIGRYCAKVGIPVLI 411

Query: 406 LSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             G     +     AL      H++         +Q  +   D++++K S+    ++L  
Sbjct: 412 GVGPMAKNIELAYSALRHDGEHHHTLDEKSAGRLLQEVVRPKDLILIKGSHDSNLWKLAQ 471

Query: 463 LLLEE 467
            + E 
Sbjct: 472 SIEER 476


>gi|303236059|ref|ZP_07322662.1| alanine racemase [Prevotella disiens FB035-09AN]
 gi|302483932|gb|EFL46924.1| alanine racemase [Prevotella disiens FB035-09AN]
          Length = 826

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 107/471 (22%), Positives = 190/471 (40%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  ++   + + I    +G   +  ++ I  DSRS+    +  FFA++    DGH +I 
Sbjct: 1   MN--YSIDKIAENINAKRLG-DAEAQISFILTDSRSLCFPEETLFFALRSERNDGHHYID 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV       S          VD+ L AL +L    R      I+ ITGS 
Sbjct: 58  ELYHRGVRNFVVEQLPDAFSSIYKQANFLQVDNSLLALQQLTTWHRSAFTIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L+  LS          SYN+ IGVPL++  +    + GI E G+S  GE+  
Sbjct: 118 GKTMVKEWLSQLLSFDHNVTRSPKSYNSQIGVPLSVWLLNESSEIGIIEAGISKRGEMEA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V+T++  AH  NFS IEE    K  +                   + + A
Sbjct: 178 LQKIIQPTIGVLTSLGAAHQENFSSIEEKCKEKLLL-------FKDTQALVYQMDDAIAA 230

Query: 238 KSHALGIKTIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K            G   KN D  L   K   + +   ++   ++       + +    ++
Sbjct: 231 KCIEDFSYDGTLLGWSEKNKDAALFVEKISKDTTTSTIEYCWQTATKGKFTLPFIDDASI 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +   +I                  E    R      Q   TLI++SYN++  S+  A
Sbjct: 291 QNCITCAAISLYLGMKPETLAERMPMLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  +++     +  R  +L D+ + G+  +  + D+AE++    I      G  ++  ++
Sbjct: 351 LDFMNRRPDQQKRARTLILSDILQSGQTEKQLYCDVAELVQKRGIKKFIGIGSALMRQQE 410

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   ++ E +         + +  +V+++K + S GF +L  LL+++
Sbjct: 411 VFDGVEERYFFENVADFINSKVFNSLADEVILLKGARSFGFDQLTELLVKK 461


>gi|327468991|gb|EGF14463.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Streptococcus sanguinis SK330]
          Length = 456

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 121/470 (25%), Positives = 200/470 (42%), Gaps = 30/470 (6%)

Query: 7   FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +++ + +     +       +     DSR I   + F  +KG   DGHDFI  A  +GA
Sbjct: 5   LYEIAEVLSAKNDVTQFENVALRNAEFDSRLIESGDLFVPLKGAR-DGHDFIATAFAQGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +    +             VDDVL +  +LA     + +  ++A+TGS GKTTTK+M
Sbjct: 64  AATLSERPVAEG------TYILVDDVLTSFLRLAQYYLEKMQVDVLAVTGSNGKTTTKDM 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  KTY   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L +P 
Sbjct: 118 LAQLLATTYKTYKTQGNYNNEIGLPYTVLHMPEDTEKLVLEMGQDHLGDIHLLSELAKPK 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +  AHL  F    EIA  K +I +GL K G + +  D    E L A    +   
Sbjct: 178 TGIVTLVGEAHLEFFGSRAEIAQGKMQIADGLRKDGLLIVPADKIVNEFLPADCKLVR-- 235

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                      D  +   +    +  +  +       +     G + A N ++       
Sbjct: 236 --------FGPDADIFLTRLEERKDSLSFECNFLEQRIDLPVTGKYNATNAMIAAYAALQ 287

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                    +A S       R +  +         ++ + YNANP +M+  +   S I  
Sbjct: 288 EGISEAAIAQAFSELELTRNRTEWKKAGNGAD---ILSDVYNANPTAMRLILETFSTIPT 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SI 422
           +  GR++AVL DM E+G  S+S H  +   L+   ++ ++L G  + AL D         
Sbjct: 345 NLGGRKLAVLADMKELGADSKSMHGSMITSLNPEIVTDLFLYGQDMEALYDYAKEIYPPG 404

Query: 423 HVHYS------ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            V Y       +  + L   ++  L   D +++K SNS    +L+  L +
Sbjct: 405 KVLYFIKNDEKDQFEQLTKAVREKLTPTDQILLKGSNSMNLAKLVEDLED 454


>gi|256390856|ref|YP_003112420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256357082|gb|ACU70579.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 528

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 134/488 (27%), Positives = 202/488 (41%), Gaps = 38/488 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-------FVNG-ISIDSRSIAPQEAFFAIKGPHYD 52
           M        + + + G   G             V G +  DSR  A    F A  G   D
Sbjct: 1   MTSPHDLGWIARTVGGTLSGPPGATQEELAALAVTGPVVFDSRDAAAGALFVAFPGEAAD 60

Query: 53  GHDFILHAVQKGAGLVVVNTD---MVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSK 107
           GHDF+  AV KGA  V+   D           S+P   V   D+L AL+ LA A   R  
Sbjct: 61  GHDFVQAAVDKGAVAVLAAPDDAYRKPWTARGSVPTVTVGDGDLLRALSALATAHLARLP 120

Query: 108 -ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T+I +TGS GKTTTK+++      +  T A  GS+NN +G P+T+ R   D  + + E
Sbjct: 121 RTTVIGLTGSAGKTTTKDLIGRLTRELGPTVAPKGSFNNELGFPITVLRTDEDTRYLVAE 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI--------FEGLE 218
           +G   +G I+ LT +  P I V+  +  AHL  F  +E IA AK E+            +
Sbjct: 181 MGARGIGHIKHLTTIAPPRIGVVLNVGSAHLGEFGSVEAIAEAKGELAAAVPESGNCNPD 240

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-----ME 273
           + G   LN DD+    + A++       +  FG+S +AD +    +  S+          
Sbjct: 241 RDGVAILNADDARVRGMAART----KGRVVLFGESPDADVRAEDVRVGSDGRASFTLLYR 296

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    V    +G H   N L        L    +   + LS   P      R    
Sbjct: 297 DGEGPHRYPVALRLVGEHQVSNALAAAATGLELGLAGEKVAEVLSAAEP--DSKWRMAIG 354

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDL 392
            +    T+++++YNANP SM+AA+  L+ ++    G R  AVLG M E+G+ S   H  +
Sbjct: 355 ESADGVTVLNDAYNANPESMRAALKTLATMARARPGARSWAVLGTMAELGDDSAVEHDAV 414

Query: 393 AEVLSLYNISHVWLSGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +    NI+     G    A+          +         D    F+++    GDVV+
Sbjct: 415 GRLAVRLNIAQTVAVGAGAAAIHSGASMEGSYNGESVAVPDADAALAFVRAGARPGDVVL 474

Query: 449 VKSSNSCG 456
           VK+S + G
Sbjct: 475 VKASRAIG 482


>gi|227833495|ref|YP_002835202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|262184483|ref|ZP_06043904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454511|gb|ACP33264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 511

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/520 (23%), Positives = 202/520 (38%), Gaps = 68/520 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  ++ +   G    +  P   V G +  DSR +     F A+ G   DGHD+  
Sbjct: 1   MIAL-SLAEIAEITGGRLDSVDEPDTQVTGFVEFDSRKVTSGSLFVALPGARVDGHDYAT 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD------------DV--------------- 91
            A+ KGA  V+           + +P   V+            D+               
Sbjct: 60  TAIDKGAVAVLAARP-------VGVPAIVVEPHGRVEGDGANADIYANDEDGSAAAVVAA 112

Query: 92  -----LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                     +LA         TI+ +TGS GKT+TK+++      + +T A  GS+NN 
Sbjct: 113 LSAIARAVTQRLAA----EQNLTIVGVTGSAGKTSTKDLIATIFREVGETVAPPGSFNNE 168

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG+P T  R      + + E+    +G IR LT +  P + V+  +  AHL  F   E I
Sbjct: 169 IGLPYTALRCDEHTRYLVAEMSARGIGHIRHLTEITAPRVGVVLNVGTAHLGEFGSRENI 228

Query: 207 ASAKAEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLR 261
           A AK E+       E  G   LN DD F   +  ++ A  +   T    G +  A +   
Sbjct: 229 AQAKGELVEALPNAEAGGVAVLNADDPFVAAMAPRTEAKVVYYSTENRRGGAPAAQYYAT 288

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                             +  V      +   Q         + +   V     A ++  
Sbjct: 289 DIVLDDVARPSFTLHSPDAEPVAVKLQVFGSHQVSNALAAAAAAIELGVSADTVAAALSG 348

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMK-AAISVLSQISPHGEGRRIAVLGDMCE 380
            +     R      +   T+ID+SYNANP SM+ A  ++    +   + R IAVLG+M E
Sbjct: 349 HRLASEHRMDVRTRRDGVTIIDDSYNANPDSMRAAIAALAYTAAARPDARSIAVLGEMGE 408

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALP-RSIHVHYS-------ETM 430
           +G  ++  H  L E L+ Y++ H+   G +    A+ +A   + I+           + +
Sbjct: 409 LGSDAEQSHRQLGEFLAKYHVEHLIAVGENPNCRAMAEAAAQQGINTVVCADAAAAAQAV 468

Query: 431 DGLFLFIQSSLVD------GDVVVVKSSNSCGFYRLINLL 464
           DG+     + + D       DVV++K+SN+   + +   L
Sbjct: 469 DGILRVAPAGVDDWASRSVKDVVLIKASNAQRLWLVAEQL 508


>gi|258649253|ref|ZP_05736722.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850436|gb|EEX70305.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Prevotella
           tannerae ATCC 51259]
          Length = 430

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 111/435 (25%), Positives = 186/435 (42%), Gaps = 20/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R   P   FFA++G  ++G+ F   A+  G  L      +          +  VD
Sbjct: 16  ITTDTRDCPPGSIFFALRGETFNGNRFAHQALDNGCALA----VVDDPSVVDDDRLILVD 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           DVL  L  LA   R +    +I ITG+ GKTTTKE+++  LS         G++NNHIGV
Sbjct: 72  DVLTTLQALAAFHRHQFTGPVIQITGTNGKTTTKELVSAVLSERYNVLFTQGNFNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+       + E G +H GEI+ L+ +V P   +IT +  AHL+ F   E +   
Sbjct: 132 PKTLLRLNASHQIAVIETGANHPGEIKLLSEIVDPDCGLITNVGKAHLAGFGSFEGVIRT 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L      F+  +      L+  +H L   T    GK  + + ++     C   
Sbjct: 192 KGELYDYLRTKSDAFVFINADN-PYLQPIAHDLLRITYGRPGKDYDVEGEVLTCDPCLNL 250

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +       + ++    G          + +G+   +T +  +   A             
Sbjct: 251 RFRIKGGAWQEVKTQLIGAYNIDNILAAVAVGVRFGVTPEQISRAIAAYC------PTNN 304

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               L     TLI ++YNANP SM AA+     I       ++A+LG M E+G  S   H
Sbjct: 305 RSELLRTATNTLIVDAYNANPTSMAAALDNFQLIKHP---HKMAILGGMRELGNASAQEH 361

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + ++   +  +WL G       +         Y  +++ +   ++   +   ++++
Sbjct: 362 QAIIDKVATMALDDIWLVGEEFQPFAE------RYRYFPSVEAVEQQLREHPLHDSLILI 415

Query: 450 KSSNSCGFYRLINLL 464
           K SNS   YRL + L
Sbjct: 416 KGSNSQHLYRLPDYL 430


>gi|134102303|ref|YP_001107964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alani ne ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914926|emb|CAM05039.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 458

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 122/462 (26%), Positives = 183/462 (39%), Gaps = 38/462 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR +AP   F A+ G   DGHDF   AV  GA  V+   +       +  P   V  
Sbjct: 2   EFDSRKVAPGGLFVAVPGERVDGHDFAARAVADGAAGVLAARE-------VDAPAVIVPP 54

Query: 91  V------LGALN----------------KLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V      L AL                           + T++ +TGS GKT+TK+++  
Sbjct: 55  VPAEATGLMALAGDTDGSGAAVLAALARLARYVVDRLPRLTVVGVTGSSGKTSTKDLIAQ 114

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  +  T A  GS+NN +G P T  R   D    + EL    +G I  L  +  P I  
Sbjct: 115 LLEPMGPTVAPPGSFNNELGHPWTALRADEDTRHLVLELSARGVGHIAKLCEVAPPRIGA 174

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +  AHL  F   E +A AK E+ E L   G   LN DD     + +++ A  +    
Sbjct: 175 VLNVGHAHLGEFGSQEAVARAKGELVESLPADGVAVLNADDPLVAAMASRTRARVVLVGE 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S G    A+  +   +     +         S +V     G H   N L    I   L A
Sbjct: 235 SPGAHVRAEDIVLDEQARPSFTL---VAPQGSAQVSLPLHGEHHVGNALSAAAIALELGA 291

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++     LS       R  R   A      T+++++YNANP SM+AA+  L+ ++    
Sbjct: 292 TLEQVADRLSGVRRVSAR--RMEVAETADGVTVVNDAYNANPESMRAALKTLASMTRGRP 349

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL----PRSIHV 424
           GR  AVLG M E+GE     H ++  +    NI  + + G     +              
Sbjct: 350 GRAWAVLGVMGELGESGAQAHDEIGRLAVRLNIDRLVVVGDQAAGMHHGASLEGSWGEES 409

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                +D     +++ L  GDVV+ K+S     +R+   L+E
Sbjct: 410 VLVPDVDAAVALLRAELRPGDVVLAKASKVAALWRVAEALIE 451


>gi|256838760|ref|ZP_05544270.1| alanine racemase [Parabacteroides sp. D13]
 gi|256739679|gb|EEU53003.1| alanine racemase [Parabacteroides sp. D13]
          Length = 821

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I       +    V+ +  DSR ++   +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF        +  +                    +L  A       
Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +   S+         +   ++ +  +             I +    ++   +  ++
Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414

Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +        +      +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457


>gi|289426175|ref|ZP_06427921.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289426854|ref|ZP_06428580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|289153340|gb|EFD02055.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK187]
 gi|289159943|gb|EFD08121.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J165]
 gi|313764739|gb|EFS36103.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA1]
 gi|313791789|gb|EFS39900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA1]
 gi|313802124|gb|EFS43356.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL110PA2]
 gi|313807241|gb|EFS45728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA2]
 gi|313813211|gb|EFS50925.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA1]
 gi|313815804|gb|EFS53518.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA1]
 gi|313818287|gb|EFS56001.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA2]
 gi|313820049|gb|EFS57763.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA1]
 gi|313823142|gb|EFS60856.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA2]
 gi|313825581|gb|EFS63295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA1]
 gi|313827820|gb|EFS65534.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL063PA2]
 gi|313838456|gb|EFS76170.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL086PA1]
 gi|314915230|gb|EFS79061.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA4]
 gi|314918541|gb|EFS82372.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA1]
 gi|314919804|gb|EFS83635.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL050PA3]
 gi|314925471|gb|EFS89302.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL036PA3]
 gi|314931819|gb|EFS95650.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL067PA1]
 gi|314955975|gb|EFT00373.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA1]
 gi|314958370|gb|EFT02473.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA1]
 gi|314960278|gb|EFT04380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA2]
 gi|314963087|gb|EFT07187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL082PA1]
 gi|314968078|gb|EFT12177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA1]
 gi|314978264|gb|EFT22358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA2]
 gi|314987728|gb|EFT31819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA2]
 gi|314990207|gb|EFT34298.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA3]
 gi|315080335|gb|EFT52311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL078PA1]
 gi|315084594|gb|EFT56570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL027PA2]
 gi|315085930|gb|EFT57906.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL002PA3]
 gi|315088652|gb|EFT60628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL072PA1]
 gi|315098261|gb|EFT70237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL059PA2]
 gi|315101048|gb|EFT73024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL046PA1]
 gi|315108240|gb|EFT80216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL030PA2]
 gi|327330613|gb|EGE72359.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL097PA1]
 gi|327332213|gb|EGE73950.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA3]
 gi|327442835|gb|EGE89489.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL013PA2]
 gi|327451057|gb|EGE97711.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA3]
 gi|327452861|gb|EGE99515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL092PA1]
 gi|327453588|gb|EGF00243.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA2]
 gi|328753090|gb|EGF66706.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL087PA1]
 gi|328753745|gb|EGF67361.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL020PA1]
 gi|328759165|gb|EGF72781.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL025PA2]
 gi|332675171|gb|AEE71987.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes 266]
          Length = 485

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/493 (24%), Positives = 189/493 (38%), Gaps = 33/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +         + R +AVLGDM E+G+ S   + +   + +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++G    +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRLINLLLEEFPA 470
            R+   + EE  A
Sbjct: 471 ERVGREVFEEREA 483


>gi|150009966|ref|YP_001304709.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Parabacteroides distasonis ATCC
           8503]
 gi|255012771|ref|ZP_05284897.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. 2_1_7]
 gi|149938390|gb|ABR45087.1| alanine racemase [Parabacteroides distasonis ATCC 8503]
          Length = 821

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I       +    V+ +  DSR ++   +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF        +  +                    +L  A       
Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +   S+         +   ++ +  +             I +    ++   +  ++
Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414

Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +        +      +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457


>gi|262382727|ref|ZP_06075864.1| alanine racemase [Bacteroides sp. 2_1_33B]
 gi|262295605|gb|EEY83536.1| alanine racemase [Bacteroides sp. 2_1_33B]
          Length = 821

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 90/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I       +    V+ +  DSR ++   +  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEKSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF        +  +                    +L  A       
Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +   S+         +   ++ +  +             I +    ++   +  ++
Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYASVFE--IEK 414

Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +        +      +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457


>gi|295130329|ref|YP_003580992.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|291376175|gb|ADE00030.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes SK137]
 gi|313772511|gb|EFS38477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL074PA1]
 gi|313809747|gb|EFS47468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL083PA1]
 gi|313830656|gb|EFS68370.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL007PA1]
 gi|313833876|gb|EFS71590.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL056PA1]
 gi|314973658|gb|EFT17754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL053PA1]
 gi|314976251|gb|EFT20346.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL045PA1]
 gi|314983540|gb|EFT27632.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL005PA1]
 gi|315096278|gb|EFT68254.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL038PA1]
 gi|327325914|gb|EGE67704.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL096PA2]
 gi|327446206|gb|EGE92860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA2]
 gi|327447811|gb|EGE94465.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL043PA1]
 gi|328760589|gb|EGF74157.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium acnes
           HL099PA1]
          Length = 485

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 121/493 (24%), Positives = 186/493 (37%), Gaps = 33/493 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIDTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDTGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRTIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGNAHLGEFGSREVIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAHQVANAVAATAAALAALAMNDDIDDQTVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM          + ++     + R +AVLGDM E+G+ S   + +   + +
Sbjct: 353 EDCYNANPDSMAASLTSMGHVLATRRVRDPQTRGVAVLGDMLELGQDSARLNAESGRLAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++G    +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAENIAEGARAEGARVIVSTVEGASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRLINLLLEEFPA 470
            R+   + EE  A
Sbjct: 471 ERVGREVFEEREA 483


>gi|289522910|ref|ZP_06439764.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503934|gb|EFD25098.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 468

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 114/437 (26%), Positives = 190/437 (43%), Gaps = 14/437 (3%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG--SLSIPVF 86
            I  DSR I   + F A+KG   DGH FI  A+ +GA  V++  + ++     +  I  F
Sbjct: 32  SIKTDSRKIEKGDIFIALKGNRSDGHSFISDAINRGAKGVILKDEEMSKFTSFNKDISFF 91

Query: 87  GVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           GV     A+ + +        +   I+A+TGSVGKTTTKE +   L    + +   G+YN
Sbjct: 92  GVPSPDVAILEASERYLAGLSSLREIVAVTGSVGKTTTKEAIGKVLERTYRVHISRGNYN 151

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
             +G  LT+   P + +F + E+G +  GEI  + +  RP  +VIT++ P HL  F GI+
Sbjct: 152 TLLGCCLTILVAPRNTEFLVLEMGANAKGEIGEIANRFRPSSSVITSVDPVHLEGFGGID 211

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK EI         +F+N D         K        I S G S +  +++    
Sbjct: 212 GVLGAKLEIVT--ADCKLLFVNGDSPILNSGIDK-LKHRPSKIISVGTSTSCIYRITDSS 268

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + +    ++   S   +         +   + + +   +  +   A   ++      
Sbjct: 269 LRLDGNHYFRKITIDSPFGLKTVESKLWGKQHTLIISLAFAVGCEYGVAPDDIAQGLFVM 328

Query: 325 GRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
              +     L      L  + SYNA+P S+KAAI  L  I     GR+IAVLG M E+G 
Sbjct: 329 SLPRGRGAILQSEEGVLFIDESYNASPVSVKAAIDNLCLIPSR--GRKIAVLGGMKELGS 386

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +  FH ++ +  +      V + G     +        +V   + M+ +   +++ L  
Sbjct: 387 YANRFHDEILDYAAKA-ADQVLIHGSEWKGINKNY---KNVLCLQDMEDIVNHLKAILRT 442

Query: 444 GDVVVVKSSNSCGFYRL 460
           GDVV+VK S +    R+
Sbjct: 443 GDVVLVKGSRAYEMERV 459


>gi|256419281|ref|YP_003119934.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Chitinophaga pinensis DSM 2588]
 gi|256034189|gb|ACU57733.1| alanine racemase [Chitinophaga pinensis DSM 2588]
          Length = 834

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 181/473 (38%), Gaps = 15/473 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAV 61
           ++    + + ++G  +       +  I +DSR ++      F  +     + H +I    
Sbjct: 1   MYNAESISKVLKGELLQQTGNPEIEHILLDSRKLSFPETSLFIPLVSSRRNAHQYIQELY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KG    +V+  +          +  V D + AL+ L    R +    +I ITGS GKT 
Sbjct: 61  EKGVSNFIVSEPVPEGKYPK-ANIILVKDTMQALHALVAYHRQQFHIPVIGITGSNGKTI 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   L           SYN+ IGVPL++ +M  +    IFE G+S  GE+  L  +
Sbjct: 120 VKEWLYQLLEKDYNIVRSPKSYNSQIGVPLSVWQMKPEHQLAIFEAGISQPGEMEHLEKI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGI-----EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +RP+I + T I  AH   F  I     E++            K          +F  L+ 
Sbjct: 180 IRPNIGIFTNIGEAHNEGFLNIRQKINEKLVLFSKSDLLIYSKDYLALNECVLNFHNLVG 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K +  G   ++++ +   AD ++    +    S ++   Q   + +    +      ++
Sbjct: 240 KKDNHEGGLQLFTWSRKTEADLRIISVDKSEHHSRIDALYQTIPIHINIPFVDEG---SV 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +   +++                      R          ++I++SYN++  S+  A
Sbjct: 297 ENAIHCWALMLHLGMEHSVIQQRMDQLGNIAMRLELKQGINNCSVINDSYNSDLGSLAIA 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L Q   H       +L D+ + G+   S + ++A +L    I+ V   G ++   K 
Sbjct: 357 LEFLQQQQQHPTR--TVILSDILQSGKSDASLYEEVASLLQQKGINKVIGIGKNIFREKK 414

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  +   +   +  T +             + +++K +    F R+  LL ++
Sbjct: 415 SFQQITGLKSSFFLTTEEFIQQFNQQDFQHETILLKGARIFEFERIGKLLEQK 467


>gi|326798766|ref|YP_004316585.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
 gi|326549530|gb|ADZ77915.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Sphingobacterium sp. 21]
          Length = 437

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 119/436 (27%), Positives = 195/436 (44%), Gaps = 15/436 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS D+R+I P   FFA+ G  ++G+ F   A++ GA L +V+  +      +   +  V 
Sbjct: 16  ISTDTRNILPGSIFFALSGATFNGNQFAEKALELGARLAIVDEPIPI----VDERIEVVS 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R + +  +I +TG+ GKTTTKE+L   LS     YA  G+ NNHIGV
Sbjct: 72  NVLETLQNLARYHRDQLQIPVIGVTGTNGKTTTKELLQSVLSQKFNVYATKGNLNNHIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PL++  +   ++  I E+G +H+GEI FL  + RP + +IT +  AHL  F   E +  A
Sbjct: 132 PLSVLAIDSAIELAIIEMGANHIGEIAFLCGIARPELGLITNVGKAHLEGFGSFEGVKQA 191

Query: 210 KAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           K E      E  G +FL  D++    +        I T      +  +   L      + 
Sbjct: 192 KGELYEWLEEHKGVLFLQGDNNHLLSMANNKTFKQIITYGLDKSNNISGELLSVNPVLNL 251

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                         V  H  G +  +N+L  + +      + +   + ++ + P   R +
Sbjct: 252 GWSSIKAYGYDRQVVPTHLTGSYNLENVLAAVAVGLYFGLNPEEINRGITAYSPTNNRSQ 311

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    T+I + YNAN +SM AA+  L  I    +   +++LGDM E+GE + + 
Sbjct: 312 ITQTEKN----TVICDYYNANASSMWAALDNLESIHAEKK---VSILGDMFELGEEAPTE 364

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  L E +    +      G               + Y E++D     +Q   +D   V+
Sbjct: 365 HRRLIERIRGMKLYRKIFVG---RNFFGQRQEEHDIEYYESLDAAKQALQEKPLDNTTVL 421

Query: 449 VKSSNSCGFYRLINLL 464
           +K+S    F  L+  L
Sbjct: 422 LKASRGMAFEGLLQYL 437


>gi|298374323|ref|ZP_06984281.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|301307851|ref|ZP_07213807.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
 gi|298268691|gb|EFI10346.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_19]
 gi|300834194|gb|EFK64808.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 20_3]
          Length = 821

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 172/465 (36%), Gaps = 16/465 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++ + I       +    V+ +  DSR ++   Q  FFA+K    DGH +I    +  
Sbjct: 5   IKEIARVIGAK-TNQLLDDTVSLLLTDSRRLSFPEQSLFFALKTKTNDGHRYIQELYKLR 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
               VV+  +             V D L AL KLA   R +    +I ITGS GKT  KE
Sbjct: 64  VRNFVVSDMLPEFESMKDANFLIVKDTLRALQKLATHHRKQFNIPVIGITGSNGKTIVKE 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++ P
Sbjct: 124 FLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSEKNTLGIFEAGISQPDEMERLQPIIAP 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +IT I  AH  NF        +  +                    +L  A       
Sbjct: 184 TIGIITNIGEAHQENF-------LSSNQKCMEKLTLFNDCEAIIYDGDDLFIANCIESAC 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            +  +   S+         +   ++ +  +             I +    ++   +  ++
Sbjct: 237 LSHKAIAWSRTDSEAPLFIESIDKKEFETIIHCTLLGFNRVVTIPFTDDASIENVIHCMA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++     T++  ++ F   E    R           LI+++YN++  S+  A+       
Sbjct: 297 VMLYLKPTSVNDVTKFLHLEPVAMRLDVKQGINNCLLINDTYNSDINSLDIALDFQQSRR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              + +   +L D+ + G L +S +  +A+++    I  +   G  +          I  
Sbjct: 357 VGKQLKSTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIVGIGRDLKEYASVFE--IEK 414

Query: 425 HYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +  T +        +      +++++K S    F ++  LL ++
Sbjct: 415 EFYTTTEEFIKSPSFKKF--KDELILIKGSRHFHFEQISELLEKK 457


>gi|294085905|ref|YP_003552665.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665480|gb|ADE40581.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 483

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 167/477 (35%), Positives = 233/477 (48%), Gaps = 14/477 (2%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  PLWT  ++     G           ++ I++DSR       F A+ G   DGHDF+ 
Sbjct: 1   MTAPLWTVDEICTHTSGIMAETAMVPAPIDHITMDSRMCRKGSLFVALPGAQADGHDFLA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A    A   +V T  +    S+ +    V D L AL  LAVA R R K  +IAITGSVG
Sbjct: 61  KAANADASAALVTTPDI----SIELAQIIVPDCLAALTALAVAGRNRFKGAMIAITGSVG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TKEML   L +  +++A  G++NNHIG+PL+LA +P    F I E+GM+H GEI  L
Sbjct: 117 KTGTKEMLAHLLRACGQSHANEGNFNNHIGLPLSLAALPAGSQFAIQEIGMNHAGEIAKL 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP IA+IT IA  H  +F  I+ IA+AKAEIFEG+   GT  LN DD FF  L   
Sbjct: 177 TRIARPDIAMITRIAAVHSGHFESIDAIANAKAEIFEGM-HGGTAVLNIDDPFFPHLSQA 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + + GI  I +FG   +A+F L   +Q ++   +E  L G  +       G H A N L 
Sbjct: 236 AKSAGISRIVTFGSHSDAEFCLLSSRQDNDGMKIEADLSGVPVSFHLGMSGQHWAMNSLG 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  V  L  D   A  +L+ F    GRG  +    N    ++ID+SYNA+PASM AA++
Sbjct: 296 VLACVHALGEDPVAASDSLASFGDIAGRGACHNGIFNGHAISVIDDSYNASPASMSAALA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                + H +   I VL DM E+G  S + H D+   ++     HV   G         +
Sbjct: 356 PFLTGARHTD---IMVLSDMLELGSHSAAAHDDIVATVASIGPRHVIAIGDDFAHAFAKV 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL----LLEEFPAI 471
                V  +         +   +   D + +K S   G +R+ N     L ++ P  
Sbjct: 413 AHDCDVIIANDPAHATDMLARLVQADDTIFIKGSKGSGAWRVTNAVLSVLTDKTPTT 469


>gi|297243800|ref|ZP_06927730.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
 gi|296888221|gb|EFH26963.1| UDP-N-acetylmuramyl pentapeptide synthase [Gardnerella vaginalis
           AMD]
          Length = 536

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 140/511 (27%), Positives = 207/511 (40%), Gaps = 53/511 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M P+    ++   + G              N +  DSR I     F AI G H DGHD++
Sbjct: 27  MMPM-NISEIANTVHGEMHEFNSCDTDLVANSVFSDSRQIRNGSVFVAIVGEHVDGHDYV 85

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-----RSKATIIA 112
            +A + GA + +V       +   ++    V++ + AL  LA              TII 
Sbjct: 86  KNAEKSGAVVAIVEH----VVEGTNLNQIVVNNSVEALGLLAKHNLELRRNLNKPFTIIG 141

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGSVGKTTTK+ML   LS++ +T A +GS+NN+IG+PLT  ++  +  F I E+G +H+
Sbjct: 142 ITGSVGKTTTKDMLKALLSTLDETVAPVGSFNNNIGLPLTALQVGSNTRFLIAEMGANHV 201

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  LTH+  P +A++  +  AHL  F  +E IA AK+EI  GL   G   LN DD   
Sbjct: 202 GEIANLTHIAPPDLAIVLKVGVAHLGEFGSVERIAQAKSEIVRGLLPHGIAVLNSDDKRV 261

Query: 233 ELLK-----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--------- 278
             +            G        +S + D            S+ +              
Sbjct: 262 SAMSCLVENKHVRWFGRNAKNGLLESASKDDYQLSASNIKLDSFGKAVFTITERSNSSDL 321

Query: 279 -KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQ 336
              +EV     G H   N L    +   L   +D     LS          +      N 
Sbjct: 322 VNHIEVHLAIQGEHNVMNALAAANVARYLGMTLDDIASVLSKVSHISPHRMQLSTVSKND 381

Query: 337 GFFTLIDESYNANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             FTLID+S+NANP SMKA I  L        S   +  RIAVLG M E+G      H +
Sbjct: 382 EKFTLIDDSFNANPDSMKAGIDGLCAYENDSCSASSKPFRIAVLGSMLELGSNEDELHTN 441

Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDA---------LPRSIHVHYSETMDGLF 434
           + E ++  ++  V   G             +            L     V++  + D   
Sbjct: 442 IGEYVANSSVDAVVAVGSKTDSDLDKLAHCIAQGARSSWNNKLLSSHEAVYFVHSADEAD 501

Query: 435 LFIQSSL--VDGDVVVVKSSNSCGFYRLINL 463
             +   +      VV++K S++ G   L   
Sbjct: 502 DIVWKLVAEHPSSVVLLKGSHASGLSVLAEH 532


>gi|288803103|ref|ZP_06408538.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
 gi|288334364|gb|EFC72804.1| Mur ligase domain protein/alanine racemase [Prevotella
           melaninogenica D18]
          Length = 826

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 115/471 (24%), Positives = 195/471 (41%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV       +          V   L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYARGVRNFVVEVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMMA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V TT+  AH  NF  +E     K ++F     T  I  + D+       +
Sbjct: 178 LRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSADNEVMAQCLS 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G K  +S   ++ A +     K+  E +   V       +     I     +N +
Sbjct: 235 QYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVKNSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L     T  + ++   P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TCAVVSLHLGLTPATISERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +LA + A
Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  H+  T++      + ++L   +V+++K +   GF RL  LL+++
Sbjct: 412 FKHLGEKHFFATVNSFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461


>gi|262037247|ref|ZP_06010729.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
 gi|261748719|gb|EEY36076.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptotrichia goodfellowii F0264]
          Length = 459

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 196/453 (43%), Gaps = 29/453 (6%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +N IS++S+     + F AI+G    G+++I  A++KGA   V +             
Sbjct: 21  TDINKISMNSKECGKNDLFVAIRG----GNNYINEALEKGA-YAVYDNAHADIKEEYKNK 75

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            F V+D +  L K A   R      +I ITGS GKTT K++    LSS  K     G+YN
Sbjct: 76  TFFVNDSVEFLQKFAKKWREALDVKVIGITGSNGKTTVKDITYQLLSSKYKGKKTEGNYN 135

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL R+  D  F I E+GMS  GEI  L  +  P I++IT I  +HL      E
Sbjct: 136 NHIGLPFTLLRLEKDDKFIILEMGMSGFGEIELLGKISNPDISIITNIGESHLEFLHTKE 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+    +    + +N DD + + +   S              + ++F      
Sbjct: 196 NVFKAKTELLPYTK--EVLIINGDDDYLKNINESSLKTIKVLRKDSKNIEKSNFYYGNIN 253

Query: 265 QCSEQSWM------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              + S        +   + +      + +G H   N+ M + +      +     + + 
Sbjct: 254 FDEKGSSFSLEYSEKENEKFQKKLFKTNILGEHNILNLTMAIAVAKQFGIEDKDIEETVK 313

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                + R         +G    I+++YNA+PASMK ++   S+I  + +  +IAVLGDM
Sbjct: 314 NIKLTDMRF----QITEKGNTIYINDAYNASPASMKKSLETFSEI--YNDRMKIAVLGDM 367

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---------SIHVHYSET 429
            E+GE     H D+ E L    ++ ++L G  + +L D + +         +  V +   
Sbjct: 368 LELGENELELHSDIYETLRNIKLNKLYLFGERMKSLYDRVKKESQEKNSDENSEVEHFSD 427

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + +   ++    +  V+++K S       ++ 
Sbjct: 428 KNKIKEKLKEITDEK-VILIKGSRGMKLEEIME 459


>gi|149910623|ref|ZP_01899261.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
 gi|149806351|gb|EDM66326.1| UDP-N-acetylmuramyl pentapeptide synthase [Moritella sp. PE36]
          Length = 478

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 125/472 (26%), Positives = 193/472 (40%), Gaps = 23/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +   +     G      +  +S D+R+I   + F A+ G ++D + F+   
Sbjct: 1   MISLA-LSAIAAQLNSKWQGD--DVVITAVSTDTRTIKAGDLFIALSGDNFDANRFVAT- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A        +V    ++ IP   V D   AL  L    R      + A+TGS GKT
Sbjct: 57  ----AAEEGAIAAIVTKKQAVDIPQIIVKDSRIALGLLGKMVREHVAPKVAALTGSNGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   L  +  T A  G++NN IGVPLTL R+     F + ELG +H  EI + T 
Sbjct: 113 TTKEMLAAILKLVAPTLATAGNFNNDIGVPLTLLRLQQQHQFAVMELGANHKKEIAYTTG 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P + +I  +  AHL  F  ++ +ASAK+EI  G+++ G   LN DD F+     K  
Sbjct: 173 LVLPDVVLINNVDAAHLEGFGDLQGVASAKSEILSGVKQQGIAVLNRDDKFYPYWLRKVD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A    +      + +      ++      ++           +     G H   N L   
Sbjct: 233 AQRQVSFSVVDDNADYFAADIEFDNAGNPTFKLCTSN-GDCTINLAVAGRHNVANALAAA 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I S    D+ T  + L      +GR K  +         +ID+SYNAN AS+KAAI+VL
Sbjct: 292 AIASCFGIDISTIKRGLESMVNVQGRLKISQLTPR---IRIIDDSYNANIASVKAAINVL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +          + V+GDM E+G  +   H  +        + HV+  G            
Sbjct: 349 THFPS----TNVLVMGDMGELGSSTADMHQQVGHYAQQQQVDHVYTCGAVSREAALTAGE 404

Query: 421 SIHVHYSETMDGLFLFIQSSL--VDGD---VVVVKSSNSCGFYRLINLLLEE 467
           S     +++   L   +   +          ++ K S S    + I LL  +
Sbjct: 405 SGRAFLAQS--ALVDALVELVTTAPDTQMFTLLFKGSRSAKMEQAIGLLTTK 454


>gi|261749596|ref|YP_003257282.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497689|gb|ACX84139.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 433

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 114/439 (25%), Positives = 200/439 (45%), Gaps = 21/439 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI I+S+ +     FFA+KG ++DG+ F   A+  GA + +V+    +        +F 
Sbjct: 14  SGIEINSKKVKNGSIFFALKGNNFDGNQFAHEAISNGAMIAIVDNIKYSFSHKN---IFF 70

Query: 88  VDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNN 145
           V + L +L +LA+  RL+     IIAITGS GKTTTKE+ T  LS   +       ++NN
Sbjct: 71  VKNALSSLQELALYHRLQLNRVPIIAITGSNGKTTTKELTTAILSKKYEVVHSTEKNFNN 130

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLTL  MP +    + E+G +   EI+ +  ++ P+   IT    AHL  F  I+ 
Sbjct: 131 HIGIPLTLLSMPKNTQISVVEIGANQEKEIQKMCSIIHPNYGYITNFGKAHLEGFKNIKG 190

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +   K E++  L+K         D   +L+        +         +         K 
Sbjct: 191 VIRGKLELYNFLKKNKKKVFVNGDDPIQLI------HSLGIDRYIFSERINSDVDVPIKY 244

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +++ ++  L  K M++V   +G +   N+   + I +     +    KA+  + P   
Sbjct: 245 FWKKTDLKSVLCIKDMQIVSSLVGSYNLYNIASAITIGNYFKVPLKKIKKAVEDYIP--- 301

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   L +    +I + YNANP+SM   ++  ++I    +G +IA+LGDM E+G  S
Sbjct: 302 -NNYRSQILEKENVKIIVDCYNANPSSMIETLTFFNKI----QGNKIAILGDMLELGSFS 356

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +  H  +   L   NI+ ++L G            S  +      +    +I+S+ +  D
Sbjct: 357 KKEHAKIISFLEKSNINAIFLIGEIFSNTNR--NSSNRIRRFSHKNIFIQWIKSNSLKAD 414

Query: 446 VVVVKSSNSCGFYRLINLL 464
            +++K S       +I+ +
Sbjct: 415 YILIKGSRKNSLESMIHFI 433


>gi|225077134|ref|ZP_03720333.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
 gi|224951545|gb|EEG32754.1| hypothetical protein NEIFLAOT_02189 [Neisseria flavescens
           NRL30031/H210]
          Length = 455

 Score =  203 bits (515), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALKGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SM+AA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDKGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMQMEEVVEALTDK 452


>gi|309812705|ref|ZP_07706449.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
 gi|308433400|gb|EFP57288.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Dermacoccus sp. Ellin185]
          Length = 470

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 133/497 (26%), Positives = 209/497 (42%), Gaps = 55/497 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L +  ++     G  +G  P   + G +  DSR  A    + A  G H DGHDF+  
Sbjct: 1   MIEL-SLEEIATVTGGRLVG--PDARITGPVVTDSRECAAGSLYVARVGEHADGHDFVPA 57

Query: 60  -------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR- 105
                        AV  GA  VV                  VDDV  A  ++A A   R 
Sbjct: 58  ALAVGAAGVLGERAVD-GASCVV------------------VDDVELAFAEVARAVVDRA 98

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               I+ ITGS GKT+TK++L   L+    T A  GS N+ +GVPLT+ R+     + + 
Sbjct: 99  PNLQIVGITGSSGKTSTKDLLGAVLARFAPTIAPYGSLNSEVGVPLTVCRIDEATRYLVA 158

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G S +G I +LT +  P I ++  +  AH+  F  +E IA  K E+ E L + G   L
Sbjct: 159 EMGASGVGHIAYLTKIAPPSIGIVLNVGQAHMGEFGSVEAIARTKGELVEALPQDGVAIL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV 284
           N DDS    + +++ A  I      G  ++AD++               +       +V 
Sbjct: 219 NVDDSRVRAMASRTQAKVIL----VGLGEDADYRATDVSIDEAGRPRYHLTCPLGEADVR 274

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L  +   + L   +   ++A++                     TL+++
Sbjct: 275 LALVGEHQVGNSLSVIAAATSLGLALGDVVEAVAGAGAASRWRMEVSEVGGGV--TLVND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP SM+AA+  L+ +      R IA LG+M E+GE S   H  + ++ +   I  +
Sbjct: 333 AYNANPDSMRAALRALAHM--GTSRRSIAALGEMRELGEASHDEHTAVGQLAAELGIDRL 390

Query: 405 WLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            +            + A   +  V   + +D     +   +  GDVV+ KSS   G   L
Sbjct: 391 VVVGAGAQAIAQGARTAGMTADAVTTVDDIDAAHDVLVEQIAPGDVVLFKSSRDSGLRML 450

Query: 461 INLLLEE-----FPAIQ 472
            + L+EE     FP  +
Sbjct: 451 GDRLVEESGTPAFPVTE 467


>gi|325859574|ref|ZP_08172707.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|327314494|ref|YP_004329931.1| alanine racemase [Prevotella denticola F0289]
 gi|325482854|gb|EGC85854.1| alanine racemase [Prevotella denticola CRIS 18C-A]
 gi|326945620|gb|AEA21505.1| alanine racemase [Prevotella denticola F0289]
          Length = 826

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 112/471 (23%), Positives = 187/471 (39%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDADISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV T     +          V   L AL +LA   R      ++ ITGS 
Sbjct: 58  ELYGRGVRNFVVETVPEDWNKRYPDSNFLKVVGSLEALQRLAERHRDEYLIPVVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMSA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V T +  AH  NF  +E     K  +F   +         DD        
Sbjct: 178 LRDIIQPTIGVFTCLGSAHQENFPSLEAKCKEKLHLFHDTQAIVYSL---DDEVLNRCLD 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G K  +S    K   +     K+  E +       GK  +     I     +N +
Sbjct: 235 EYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVENSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L        + ++   P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TCAVTALQLGVTPAALGERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +L  + A
Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  H+  T++      + ++L   +V+++K +   GF RL  LL+++
Sbjct: 412 FRHLGKKHFFATVNAFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461


>gi|167630124|ref|YP_001680623.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592864|gb|ABZ84612.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate-d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 498

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 108/487 (22%), Positives = 184/487 (37%), Gaps = 32/487 (6%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L + +QG   G      ++G   +DSR +AP + FFA+ G   DGHDF+  A+  GA
Sbjct: 6   LSRLAEWMQGRVEGDGT-ARISGTAVVDSRKVAPGDVFFALPGEKVDGHDFVPAALAAGA 64

Query: 66  GLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              VV         +L     +  V+D L AL   A   R +    +IA+TGS GKT+TK
Sbjct: 65  ACAVVRRIDDGWTAALRPGQGLIVVNDGLQALQDCARHYRTQLAIPVIAVTGSTGKTSTK 124

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           ++L  A+ + +      G++NN IG+PLTL  +       I E+GM   G+I  L  + R
Sbjct: 125 DLLAAAVGAQRDVMKSPGNFNNEIGLPLTLLGVQEQHQALIVEMGMRGKGQIAALCRIAR 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----------------------GLEKTG 221
           P + ++T I P H+     +E IA AK E+ +                            
Sbjct: 185 PDVGLLTNIGPVHMELLGSMEAIARAKGELLQSLSDKGKAVVNGEDRQVVAETLSSRCPV 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                  ++    L A            +        +       +   ++  Q  G   
Sbjct: 245 VYAGTSPEALAHGLIAGGLNPAAPVQAIWATEVEPLGEQGSRVAGALGVFIPEQAAGYEE 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +       +   L  ++   A       A            R+         TL
Sbjct: 305 STFEFLLPLPGRHQVSNALLALAAAKAVGVDPAVAAGGLAQARLSSLRWETRRFDCAVTL 364

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I+++YNANPA+   + ++ +     G  R +AVLGDM E+G  +  +H  +    +   +
Sbjct: 365 INDAYNANPAA--MSAALTTAAELAGPSRLVAVLGDMYELGPEAAEYHRQVGRQAAELGV 422

Query: 402 SHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
             +   G     + D    +      +      +     +   +   DV+++K+S     
Sbjct: 423 GLLVSVGTLGACIADGAIEAGLTPERIRRFADAETAAAALPGQVEKDDVILIKASRGMRL 482

Query: 458 YRLINLL 464
            R+ + L
Sbjct: 483 ERVAHAL 489


>gi|166710649|ref|ZP_02241856.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzicola BLS256]
          Length = 503

 Score =  202 bits (514), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 128/508 (25%), Positives = 202/508 (39%), Gaps = 56/508 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V       + +LS+P   V +   AL ++A + +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVER----LLPALSVPQVVVKNTELALARIAASMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLCSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++   I  +G    AD   R+ +  +  +   +       +V     G H  
Sbjct: 234 EQQLQAQPVQGRRIVRYGLQIGADITARQLQLQAGATQFTLVTPQGEAQVALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVH--YSETMDGLFLFIQSSLVDGD-------------------------- 445
              A      V   + E +D L   +  +   G                           
Sbjct: 407 AAQAFGDGGRVFATHGELIDALQADLVDTARRGTRTQQHASGNTQEHAVIHQQKSPSTAA 466

Query: 446 -------VVVVKSSNSCGFYRLINLLLE 466
                   ++VK S      R++  LL 
Sbjct: 467 LSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|34763170|ref|ZP_00144137.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237742554|ref|ZP_04573035.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
 gi|27887168|gb|EAA24272.1| Histidinol-phosphatase;
           UDP-N-acetylmuramoylalanyl-D-glutamyl-meso-lanthionine--
           D-alanyl-D-alanine ligase [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229430202|gb|EEO40414.1| histidinol-phosphatase [Fusobacterium sp. 4_1_13]
          Length = 611

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 115/442 (26%), Positives = 202/442 (45%), Gaps = 35/442 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KG  LV+ +     +       
Sbjct: 201 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGTSLVIAD-----NTDIKDKR 251

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V  V D +  +  LA   R +    ++ ITGS GKTTTK+++   LS   KT    G+YN
Sbjct: 252 VIKVTDTIATMQDLATKYRNKLDIQVVGITGSNGKTTTKDIVYSLLSVKAKTLKTEGNYN 311

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P+ A+IT I  +H+      +
Sbjct: 312 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPNYAIITNIGDSHIEFLKTRD 371

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E ++K  T     D+   +L   K            G ++N  +++  ++
Sbjct: 372 NVFKAKTELLEFVDKENTFVCGDDEYLGKLDVNK-----------VGFNENNTYKIESYE 420

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++ S   +  +    E     +G H   N  + + +   +    +   K L       
Sbjct: 421 FSNKGSKFILDGK----EYEMSLLGKHNISNTAIAIELAKKIGLTDEEIQKGLKEIKISN 476

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +     G    I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 477 MRFQEIK----IGNDIYINDAYNASPMSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 530

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +H+D+   L    I  ++L G  +    D   ++        Y  T +G+   +++ 
Sbjct: 531 EVDYHMDVLNYLLDKKIKLIYLYGERMKKAYDIFMKNKSEEYRFWYYPTKEGIVESLKN- 589

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
           +    V+++K+S       +I 
Sbjct: 590 IKMDKVILLKASRGIKLEEIIK 611


>gi|255068197|ref|ZP_05320052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
 gi|255047539|gb|EET43003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sicca ATCC 29256]
          Length = 455

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRGNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRHRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL +             +   
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A                 + D               ++    +   VV    G H   N 
Sbjct: 230 AMFQTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLILDDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|329944587|ref|ZP_08292727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530140|gb|EGF57023.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 486

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 130/486 (26%), Positives = 199/486 (40%), Gaps = 28/486 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   +   +  A+ G  IG  P   V G +  DSR       F A+ G   DGH  +  
Sbjct: 5   MN--LSLSQIAAAVGGRLIG--PDAPVTGPVVTDSRLATEGALFVAVHGERTDGHAHLGS 60

Query: 60  AVQKGAGLVVVN----------TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR------ 103
           A   GA   +V+                    S+ +  V+D + AL  LA          
Sbjct: 61  AGALGAVGAIVSDLEAARSGLIQGERGETEDPSMGLVLVEDTVTALGALARTHLAGLRRT 120

Query: 104 ---LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                 + T++A+TGSVGKTTTK++    L++   T A   S+NN IG+PLT+       
Sbjct: 121 AADRGERLTVVAMTGSVGKTTTKDLTRQLLAASGPTVAPRASFNNEIGLPLTVLEADEST 180

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+G S  G I +LT +    +A +  I  AH+  F  IE +A+AKAEI  GL   
Sbjct: 181 RYLVLEMGASGPGHITYLTDIAPLDVAGVLMIGHAHMGGFGSIEGVAAAKAEIIAGLLPE 240

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN DD+    +   + A  +      G +     ++   +    +S  ++ L G  
Sbjct: 241 GVAILNADDARAAAMAGLAPAQVLTFSAQGGPADLRAERIVLDEAA--RSAFDLHLPGLD 298

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                                    L A ++  + A  +         R   +   G   
Sbjct: 299 GPRRVQLAVAGAHNVANALAAAGLALAAGLEPELIAERLGSVSIESPHRMDVSELSGDLL 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LID+SYNAN  S     ++ +  +  G  RR+ V+ +M E+GE S + H    E+ +   
Sbjct: 359 LIDDSYNANIDS--MTAALAALPALAGGRRRVVVVSEMLELGESSAADHARTGELAAEAG 416

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            + +   G    AL  A  R + V   +        I + L DGD V+VK SN  G +RL
Sbjct: 417 AAMLIGIGSTQEALDAAGARGVEVVGFDDAAAAISQIDALLSDGDAVLVKGSNGSGAWRL 476

Query: 461 INLLLE 466
            + L E
Sbjct: 477 ADHLKE 482


>gi|325136983|gb|EGC59580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M0579]
          Length = 463

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LAAGAAAVVVSREDCAALKDA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRHRFGNEAVLATTGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 245 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 301 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|167464916|ref|ZP_02330005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 420

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/438 (26%), Positives = 196/438 (44%), Gaps = 34/438 (7%)

Query: 45  AIKGPHYDGHDFILHAV---------QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
            + G H DGH+ +  A+         ++G                    +  VDD L AL
Sbjct: 1   PLPGNHIDGHEHVAAALSKEAAAAFWKRG-----------YPNPPEDAVLIFVDDPLKAL 49

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L+   R +  A II ITGS GKTTTK+++   L +  + +   G+ NNHIG+PLTL +
Sbjct: 50  QRLSRQYREQCGAKIIGITGSNGKTTTKDLVASVLGTTYRVHKTQGNLNNHIGLPLTLLQ 109

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D +  + E+GMS  GEI  L+ L +P +A+IT I  AHL      EEIA AK EI  
Sbjct: 110 IGEDTEVAVIEMGMSGRGEIELLSELAQPDMAIITMIGDAHLLQLGSREEIARAKTEILG 169

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           GL+  G    N D+   + +  +          SFG+    +      +  ++ S   +Q
Sbjct: 170 GLQDGGLFISNGDEPLIDFVLPEIKKPEEMRRVSFGQKSTNNIYPVDIQIGNDGSSFRLQ 229

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  +     G H   N L  +     L    +   + L      +  G R      
Sbjct: 230 DSDTEFYIPLL--GLHNVMNALAAVTAGRELEVSDEKIAQGLRD---VQLSGMRIEKRKA 284

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +  FT+++++YNA+PA+ KA +S++ Q+   G   +  VL DM E+GEL + FH ++  +
Sbjct: 285 ESGFTVLNDAYNASPAATKAVLSLMKQL--KGYRHKYVVLADMLELGELEEQFHREIGGI 342

Query: 396 LSLYN----ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +       +S ++  G     + +        ++ ++ E    +   ++  +   DVV+
Sbjct: 343 AANLAEQGELSGIYTYGPLGRYIAEEAKARFPLVNTYWFEDKQAMANALKEVIHPEDVVL 402

Query: 449 VKSSNSCGFYRLINLLLE 466
           VK+S       ++N LL 
Sbjct: 403 VKASRGMKLEDVVNFLLA 420


>gi|254303960|ref|ZP_04971318.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148324152|gb|EDK89402.1| bifunctional
           histidinol-phosphatase/UDP-N-acetylmuramoylalanyl-D-
           glutamyl-meso-diaminopimelate--D-alanyl-D-alanine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 608

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/443 (25%), Positives = 198/443 (44%), Gaps = 35/443 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  + +DSR +     FFAI     +G+ ++   + KG  LV+ +     +       
Sbjct: 197 VQIKNVVMDSRKVIEGSLFFAI----NNGNSYVKDVLDKGVSLVIAD-----NTDVKDER 247

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V + +  +  LA   R +    +I ITGS GKTTTK+++   LS+  KT    G+YN
Sbjct: 248 ILKVSNTIATMQDLATKYRKKLDIQVIGITGSNGKTTTKDIVYSLLSAKAKTLKTEGNYN 307

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P TL  +  +  F + E+GMS LGEIR L  +  P  A+IT I  +H+      +
Sbjct: 308 NHIGLPYTLLNVTDEEKFVVLEMGMSSLGEIRRLGEISSPDYAIITNIGDSHIEFLKTRD 367

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK E+ E        F+  DD +   L           +   G + N + ++  ++
Sbjct: 368 NVFKAKTELLE-FVNKENTFVCGDDEYLAKL----------DVNRIGFNDNNNHKIESYE 416

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + S   +  +    E     +G H   N  + + +   +    +     L       
Sbjct: 417 FSDKGSKFILDGK----EYKISLLGKHNISNTAIAIELAKKVGLTDEEIQSGLKEIKISN 472

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +  +   +      I+++YNA+P SMKAAI  L++I  + +  +IA+LGDM E+GE 
Sbjct: 473 MRFQEIKIGED----IYINDAYNASPTSMKAAIDTLNEI--YNDKYKIAILGDMLELGEN 526

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSS 440
              +HID+   L    I  ++L G  +    D   +S        Y  T +G+   +++ 
Sbjct: 527 EVDYHIDVLNYLLDKKIKLIYLYGERMKKAYDIFMKSKSEEYRFWYYPTKEGIVESLKNI 586

Query: 441 LVDGDVVVVKSSNSCGFYRLINL 463
            ++  V+++K+S       +I  
Sbjct: 587 RMEK-VILLKASRGTALEDIIKQ 608


>gi|326802039|ref|YP_004319858.1| alanine racemase [Sphingobacterium sp. 21]
 gi|326552803|gb|ADZ81188.1| Alanine racemase [Sphingobacterium sp. 21]
          Length = 820

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/465 (22%), Positives = 184/465 (39%), Gaps = 18/465 (3%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILH 59
           N ++T  D+   +   S  I P   VN ++ DSR I       FFA+ G   DGH ++  
Sbjct: 3   NKIYTVQDIATIVAVASELIDPSAIVNTLAYDSRKITDAKHALFFALPG-RRDGHQYVQE 61

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + G    VV  + V     L+     V D L AL +LA   R +    +IAITGS GK
Sbjct: 62  AYRAGVRNFVVRPEAVNITDYLNCNWLFVQDTLHALQQLATYHRKQFAYPVIAITGSNGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  KE L   LS          SYN+ +GVPL+L +M    +  I E G+S +GE+  + 
Sbjct: 122 TIVKEWLYQLLSPEYHIVRSPKSYNSQLGVPLSLWQMDGQHNLAIIEAGISKVGEMEAIE 181

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V+P I ++T I  AH   F+  +E    K ++F+  +K               + +  
Sbjct: 182 RMVKPTIGILTNIGHAHDDGFASTKEKTIEKLKLFKDADKIVY--------NPTYVDSAI 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G                    K+   Q  +E     +S  +    +     +N++  
Sbjct: 234 EVPGRHHFTWRIGKGAQLEVTASLKENGSQYVLEATYLQQSYVLTVPFVDKASIENLVCC 293

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             ++  +  +    +  +    P      R          ++ID+SY+ + +S+  A+  
Sbjct: 294 WALMLAIGYEAMVIVDRVKRLLPV---SMRLELKKGINNNSIIDDSYSNDLSSLLIALDF 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L Q   H       +L D+  +G+   + +  +A +L    +  +   G H+        
Sbjct: 351 LKQQQQHSRKM--LILSDLPTVGQNQTALYTKVASMLEGKGLDRLIGVGKHLRQHAALFR 408

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +   + +T + L   I    +    +++K S   GF  +   L
Sbjct: 409 --MDTQFFDTTEQLLTNIPKLEIRDSTILIKGSRVFGFENISKAL 451


>gi|319944702|ref|ZP_08018966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741951|gb|EFV94374.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 471

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 123/476 (25%), Positives = 190/476 (39%), Gaps = 32/476 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     + Q +   ++         GIS DSR++ P + + A++G  +DGH FI  A+  
Sbjct: 1   MLDLRTVYQWLPNVTMFGSGAERFTGISTDSRTVRPGDLYIALRGDRFDGHAFIDAAIDA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+           + +P   V D   AL  LA   R R +  +IA+TGS GKTT K
Sbjct: 61  GAAAVLTE----VFPERVRVPTLWVPDTRRALGALAGGWRRRFECPLIAVTGSNGKTTAK 116

Query: 124 EMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           EM+   L +    +  +A  G++NN IGVPLTL R+      G+ E+GM+H GEI  L  
Sbjct: 117 EMIAAILVAHLGAEAAFATRGNFNNDIGVPLTLLRLSDAHRMGVVEMGMNHPGEIAGLAA 176

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P +A++      H     G E  A     +F  L  +G      DD    + +A + 
Sbjct: 177 MTQPSVALVLNAQREHQEFMDGPEATARENGTVFGALAASGVAVFPGDDPCTPIWQALAQ 236

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +     FG   +        +   +     + +         H         + + L
Sbjct: 237 GQRVLN---FGLVADEAALEADVQSTPDAGTPYLSVAAARDARPEHFRARLGEALVDIRL 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY------------RCALNQGFFTLIDESYNA 348
            I          A  A ++                       R         LID++YNA
Sbjct: 294 NIAGRHNVRNALAAAACTLALGVPVEAIVRGLAAFEPVSGRLRRTHTAQGVPLIDDTYNA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM+AAI VL+         R+ V+GDM E G  +++FH ++ E      I  VW  G
Sbjct: 354 NPDSMRAAIDVLADQPA----PRLMVMGDMGETGAQAEAFHREVGEYAVSRAIEQVWAVG 409

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINL 463
             + A   A      V Y ET++ L          G   ++VK S      R++  
Sbjct: 410 KDMKAAAQAGG----VQYWETVEALLAE-HPQAPAGIASILVKGSRFMKMERVVRA 460


>gi|282877765|ref|ZP_06286578.1| alanine racemase [Prevotella buccalis ATCC 35310]
 gi|281300081|gb|EFA92437.1| alanine racemase [Prevotella buccalis ATCC 35310]
          Length = 824

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 178/470 (37%), Gaps = 14/470 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   ++   +   I     G      +  I  DSRS+    +  FFA+     +GH +I 
Sbjct: 1   MT--YSIEKVTTLIGARRYGTK-NAQIGFILTDSRSLCFPEETLFFALVTDRNNGHHYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              Q+G    VV+   +             V D   AL +LA   R      I+ ITGS 
Sbjct: 58  ELYQRGVRNFVVSAVPVGYDKLYPEANFLKVVDTRKALQRLAERRRDEFDIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQFYVTRSPRSYNSQIGVPLSVWLMNEQTQVGVFEAGISKPGEMNA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF  IE+    K  +                   + + +
Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFGLIEDKCREKLIL-------FHDAETLIYPADDEIIS 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K              S          K   ++  M         +   + + +    +++
Sbjct: 231 KVITEYDYPGERLYWSMKDKEAPFFVKFVEKKETMTTVTYIYKGKEDWYSLPFIDEASVV 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++    +      T           E    R      Q   TLI++SYN++  S+  A+
Sbjct: 291 NSIVCAIVSLHLGVTPDVLDQRMQQLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H    R  VL D+ + G  +   + +++ +     ++ +   G  +   +DA
Sbjct: 351 DFMNRRPDHQGRSRTLVLSDIDQSGREASELYREVSNLAVKRGVTKLIGIGPQLTEQQDA 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + +    ++  T++          +  +V+++K +   GF  L  LL ++
Sbjct: 411 I-KVTQKYFFPTVEAFIKSGVFQALRDEVILLKGARRFGFDSLSELLEQK 459


>gi|154249141|ref|YP_001409966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153077|gb|ABS60309.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 423

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/443 (22%), Positives = 166/443 (37%), Gaps = 35/443 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +   IDSR + P + F AIKG + DGHDF+ HA + GA   +V  D              
Sbjct: 11  HKFVIDSRKVQPGDVFVAIKGNNVDGHDFVKHAFENGAYAAIVEKDTGFEN------QII 64

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V + +  L +LA     + K  II ITGS GKT+TKE++   LSS    +   G+ N+ I
Sbjct: 65  VPNTVEFLGQLAKTIVEKFKPKIIGITGSNGKTSTKEIVWSVLSSEISAFKNEGNLNSEI 124

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL++          I E+    +G+I +L  +  P I V+  +  AH+     +E I 
Sbjct: 125 GLPLSIINSYRGESVLILEMAQRVVGDIEYLCKIFPPDIGVLLNVGSAHVGVAGSVENIF 184

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K +I E                      ++            K +        +    
Sbjct: 185 KGKWQIVEN-------------------SKEALVNFDDERMRCTKCRYFGTTGGDYILSK 225

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +      +     E               M L  +          +    +        
Sbjct: 226 REYNGSSTILTFEYEGEEFYYQLPGYWTKPMALSALVAFGIADMIDVLFNPLNLANYKPL 285

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           K            LID++YNA+  S KA I    +I  +    R A++G M E+GE S  
Sbjct: 286 KGRFNVHRFSKGYLIDDTYNASYESFKAGIE---EILENFPKPRYAIVGAMKELGEYSTY 342

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG--D 445
           +H  L+E+L    +  V +           +  S  +  S     +  F+ + L++   D
Sbjct: 343 YHKKLSELLEQ--LDGVVVYDKEEE--SKDISCSNIIFRSADDKEIISFLNNRLINDSFD 398

Query: 446 VVV-VKSSNSCGFYRLINLLLEE 467
            V+  K+S +    +++  +L  
Sbjct: 399 GVLYFKASRAVELDKIVEEVLNR 421


>gi|261365114|ref|ZP_05977997.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566546|gb|EFC88106.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria mucosa ATCC 25996]
          Length = 455

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ +  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQALN--LPTPSENKPVSRVVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL +             +   
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                             + D               ++    +   VV    G H   N 
Sbjct: 230 VVFQTTSQDHQQRTFGIDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++S      RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMSA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L  +
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452


>gi|313667811|ref|YP_004048095.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica ST-640]
 gi|313005273|emb|CBN86706.1| UDP-MurNAc-pentapeptide synthetase [Neisseria lactamica 020-06]
          Length = 452

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNAMRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|134294643|ref|YP_001118378.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
 gi|134137800|gb|ABO53543.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia vietnamiensis G4]
          Length = 468

 Score =  202 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 116/472 (24%), Positives = 192/472 (40%), Gaps = 19/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + I G  +   P      +S DSR+  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIPGAVVHGDPATTFERVSTDSRTAGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +      L++PV    +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHVPAGLAMPVVEGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN IGVPLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDIGVPLTLLRLSAAHRLAVIELGMNHPGETDV 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + + 
Sbjct: 176 LARLAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWR- 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              A     I  F           +         + +     ++ V    +G H A+N L
Sbjct: 235 --VAATGNRILDFALHDAQRQVGAQVTGRLHGGELAIDTPSGALTVRLRALGEHNARNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESYNANPASMKAA 356
                      ++    + L  F P +GR +  R    +    T++D++YNANP SM+AA
Sbjct: 293 AATAAALAAGVELAAIGRGLEAFEPVKGRLQVRRADVGSLAGATVVDDTYNANPDSMRAA 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL+  +      R+ V+GDM E+G+   +FH ++        I  ++  G        
Sbjct: 353 IDVLAAQAA----PRVLVIGDMGEVGDEGPAFHREIGAYARERGIDALFALGDASRDACA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           A   +    +   +  L   + ++       V+VK S      R+++ L  +
Sbjct: 409 AYGDTAR--HFGDVGALLTALLAAGYGAHATVLVKGSRYMKMERVVDALTNQ 458


>gi|224538222|ref|ZP_03678761.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520154|gb|EEF89259.1| hypothetical protein BACCELL_03113 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 833

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 113/481 (23%), Positives = 206/481 (42%), Gaps = 26/481 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T   + + I    +G  P   ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YTIETIAERISARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNKLAVAARLRSKA 108
               +G    VV+ +    + S          L++    V + L AL KLA   R + + 
Sbjct: 58  DLYSRGVRNFVVSKEAYKWVESGQLAMSNSDMLAVNFLVVANPLKALQKLAEQHREQFQI 117

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  IFE G
Sbjct: 118 PVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEAG 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N D
Sbjct: 178 ISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLFKNCD---VVIYNGD 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D F     AKS     +  +S  K       + K ++  + + +  +        +   I
Sbjct: 235 DEFISNCVAKSMLSAREIAWSR-KDMERPLFISKVEKKEDCTVISYRYLEMDNTFILPFI 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N L  L     L    +   + ++   P      R      +    LI++SYN+
Sbjct: 294 DDASIENSLNCLAACLYLMLPAEKITERMATLEPV---AMRLEVKEGKNGCLLINDSYNS 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + AS+  A+  L + S     +R  +L D+ E G+ + + +  ++++     I  +   G
Sbjct: 351 DLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLAGSRGIERIIGVG 410

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGFYRLINLLLE 466
             + +        I   +    + L   I +  L  + +++++K +   GF  L   L +
Sbjct: 411 SEISSCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGFDALTEELEK 468

Query: 467 E 467
           +
Sbjct: 469 K 469


>gi|156741088|ref|YP_001431217.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232416|gb|ABU57199.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 485

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 118/497 (23%), Positives = 202/497 (40%), Gaps = 43/497 (8%)

Query: 4   LWTFHDLL----QAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +    ++L    + +      + P   Q   +   IDSR    +  F A++G   DGH+F
Sbjct: 1   MLRLDEVLPGVQEEVNRRIHALPPALMQVAFSEAVIDSRLATSECLFVALRGERVDGHEF 60

Query: 57  ILH----------AVQKGAG-------LVVVNT---DMVASIGSLSIPVFGVDDVLGALN 96
           +              +            VV++    + +      ++ +  VDD   ALN
Sbjct: 61  LADAAARGARGALVRRSKVSSLTLERPYVVIDPVTGEGLERATPDTMLLIAVDDPQAALN 120

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R      +I ITGSVGKT+TKE+    L    +T     SYN+   +P+ L ++
Sbjct: 121 RLAAYHRGMYNPVVIGITGSVGKTSTKEVTAGVLQRSFRTLKSPRSYNSEATLPIVLLKL 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D    + E+GM   GEI  L  L RP + ++T + P+HL     IE I  AK+E+ + 
Sbjct: 181 TADHQVAVLEMGMYGPGEIAHLAALARPRLGIVTNVGPSHLERMGSIEAIQRAKSELPQA 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L + G   LN DD     +   + A      + +G    AD      +    Q       
Sbjct: 241 LPEDGFAILNIDDPRVRAMAEVTRA----RPFFYGLDPAADLWADAIESRGLQGVSFRVH 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  +   +    + +  +      +L      AI A       + R          
Sbjct: 297 YQGDGLHLTLPLLGRHSVHTALAAASAGLLLGMEWEAIIAGLRSEGAQLRLL---AVPGI 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              TLID++YNA+PASM+AA+++L+++    +GRRIA+LGDM E+G + +  H  +    
Sbjct: 354 NQTTLIDDTYNASPASMQAALNLLAEL----DGRRIAILGDMLELGSIEEEAHRMVGARA 409

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +      +   G     + +   ++      V+  +  D      ++ L  GD V++K S
Sbjct: 410 AEV-AQILIAVGQRARWIANEAQQAGLPADQVYAVDDNDAAAHLARNLLAPGDFVLIKGS 468

Query: 453 NSCGFYRLINLLLEEFP 469
                  +++ L    P
Sbjct: 469 RGMFMETIVSQLQAHRP 485


>gi|189468067|ref|ZP_03016852.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
 gi|189436331|gb|EDV05316.1| hypothetical protein BACINT_04461 [Bacteroides intestinalis DSM
           17393]
          Length = 842

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 112/490 (22%), Positives = 207/490 (42%), Gaps = 35/490 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T   + + I    +G  P   ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YTIETIAERIGARRVGDTP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGS-------------------LSIPVFGVDDVLGALNKLA 99
               +G    VV+ +   +I +                     +    V + L AL KLA
Sbjct: 58  DLYSRGVRNFVVSKETYKAIENGQLIIDDSIQRDDAQSSLIPQLNFLVVANPLKALQKLA 117

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              R + +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M   
Sbjct: 118 EQHREQFQIPVIGITGSNGKTIVKEWLHQLLSPERVIVRSPRSYNSQIGVPLSVWQMNEQ 177

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  IFE G+S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  + 
Sbjct: 178 SELAIFEAGISEMGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD- 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  N DD F     AKS     +  +S  K       + K ++  + + +  +    
Sbjct: 237 --VVIYNGDDEFISNCVAKSMLSAREIAWSR-KDMERPLFISKVEKKEDCTVISYRYLEM 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +   I     +N L  L     L    +   + ++   P      R      +   
Sbjct: 294 DNTFMLPFIDDASIENSLNCLAACLYLMLPAEKITERMTTLEPV---AMRLEVKEGKNGC 350

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  ++++++  
Sbjct: 351 LLINDSYNSDLASLDIALDFLYRRSQSNGLKRTLILSDILETGQNAPTLYRKVSQLINSR 410

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLV-DGDVVVVKSSNSCGF 457
            I  +   G  + +        I   +    + L   I +  L  + +++++K +   GF
Sbjct: 411 GIERIIGVGNEIASCAARF--DIEKAFYPNTEALLRAISRGELRLENEIILIKGARQFGF 468

Query: 458 YRLINLLLEE 467
             L   L ++
Sbjct: 469 DALTEELEKK 478


>gi|289671023|ref|ZP_06492098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. musacearum NCPPB4381]
          Length = 503

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/510 (25%), Positives = 202/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYIALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V       + +LS+P   V++   AL ++A   +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVGR----LLPALSVPQVVVENAELALARVAAGMQRDRATRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYTALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++   I  +G   +AD   R+ +  +  +   +       +V       H  
Sbjct: 234 EQQLLAQPVQGRRILRYGLHISADITARQLQLQAGAAQFTLVTPQGEAQVALPLPARHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGVALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL-------------VDG---------------- 444
              A      V    T   L   +Q+ L               G                
Sbjct: 407 AAQAFGEGGRV--FATHAELIDALQADLFDAASRETRTQQHASGNTQEHAVIHQQQSPST 464

Query: 445 -D-------VVVVKSSNSCGFYRLINLLLE 466
            D        ++VK S      R++  LL 
Sbjct: 465 ADLSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|319760282|ref|YP_004124220.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
 gi|318038996|gb|ADV33546.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Candidatus Blochmannia vafer str. BVAF]
          Length = 462

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 132/473 (27%), Positives = 211/473 (44%), Gaps = 25/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P +  H++   I    +G      +N ISI S  I  Q  F A+ G  YDGHDF+  A
Sbjct: 1   MVP-FRLHEIACFINAKCVG--SDVMINTISIHSDLIEEQCIFIALIGNRYDGHDFVEQA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V  GA  ++VN        SL IP   V D   AL K+A   R +  + IIAITGS GKT
Sbjct: 58  VMAGAKALLVNR-----YVSLDIPQLIVCDTRDALLKIAGWIRRQVSSKIIAITGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    L       A   +YNN IGV +TL ++   +DF + ELG + LGE++ L  
Sbjct: 113 SVKEMTASILKECGTVIATQKNYNNFIGVSITLLKLTYGIDFAVVELGSNKLGELKKLGE 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V   +A++  I  +HLS F  +  I   K +IF G+       +  +   +  ++  S 
Sbjct: 173 IVGADVALVNNIFSSHLSGFGSLTTIKKEKEKIFYGMSIDNAQAVI-NLDSYSFVQGNSI 231

Query: 241 ALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            L  K  +SF   K     +F               +     S  +    +G H   N+L
Sbjct: 232 LLNFKKKWSFSLYKKGIGVNFFASNVILYEHGIRFTLHSPNGSAPIFMPILGIHNISNIL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + A +   +  L   +   GR       LN+G   LID++YNAN  SM AAI
Sbjct: 292 AASALSFAVGASLSNIVHGLQKMNALPGRLFP--FILNRGKLCLIDDTYNANIGSMIAAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           +VLS +     G RI V+ DM E+G+  +++ +H  +  ++   NI ++   G     + 
Sbjct: 350 NVLSFMP----GYRILVVSDMLELGDLKMARYYHCYIGRLILGSNIDYIITIGDLSHFIL 405

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
               +     + +    L  +I   L    +  +++K +      ++++ + +
Sbjct: 406 KIFKKGK---HFQRKTALIFYINKILSQNRLISILIKGARKFKMEQVVDAVRK 455


>gi|294670604|ref|ZP_06735483.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307729|gb|EFE48972.1| hypothetical protein NEIELOOT_02329 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 455

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/472 (27%), Positives = 195/472 (41%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTSSENKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL +             +   
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTNDIAKAKSEIYQGLGED----GLALIPCEDEHA 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A                 + D               ++    +   VV    G H   N 
Sbjct: 230 AVFQTSSQGHQQQTFGVDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       +D   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAGALALAAGLSLDDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTDK 452


>gi|260911429|ref|ZP_05918020.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634476|gb|EEX52575.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 825

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 116/464 (25%), Positives = 201/464 (43%), Gaps = 11/464 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKG 64
              +   I    +G   +  ++ +  DSRS+    +  FFA++    DGH++I    ++G
Sbjct: 5   IERVATLIGAQRLGNT-EAHISFVLTDSRSLCFPEETLFFALRSNRNDGHNYIPELYRRG 63

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               VV      A+    +     V     AL +LA   R      I+ ITGS GKT  K
Sbjct: 64  VRCFVVEEVPERAAELFGNANFLCVSSTRQALQQLAQRHREAFDIPIVGITGSNGKTMVK 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E L   LS          SYN+ IGVPL++  +      G+FE G+S  GE++ L  +++
Sbjct: 124 EWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLLNSHSQLGVFEAGISQKGEMQALHDIIK 183

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I  AH  NFS  EE    K  +FEG E    +  N DD+    +  +++  G
Sbjct: 184 PTIAVLTNIGSAHEENFSTPEEKCREKLRLFEGAE---IMVYNADDALVTHVLNETNNGG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S   S  A F  +  KQ +  +   +   G+        I      N ++   + 
Sbjct: 241 QHLAWSTKSSDAAMFVTKIDKQPTHTTIHYIYKGGEPASYSLPFIDEASVCNSIICATVC 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  D  T  + +S   P      R          TLI++SYN++  S+  A++ +++ 
Sbjct: 301 LHLGLDAHTIGERISKLEPV---AMRLEVKEGLNGCTLINDSYNSDINSLDIALNFMNRR 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
             H   +R  VL D+ + G      + +++ ++    +      G  + A K+ +  +  
Sbjct: 358 PDHNGQQRTLVLSDILQSGLPDAELYREVSSLVEQRGVQKFIGIGPKICANKECIALAEQ 417

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            H+  ++D          +  +VV++K + S GF +L  L++++
Sbjct: 418 -HFFASVDEFIRSSVFKGLHNEVVLLKGARSFGFDQLTELMVKK 460


>gi|55163151|emb|CAH57484.1| D-alanine:D-alanine-adding enzyme [Actinoplanes teichomyceticus]
          Length = 463

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 125/471 (26%), Positives = 188/471 (39%), Gaps = 22/471 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  + T  ++     G  +       V   +  DSR + P   F A  G   DGHDF   
Sbjct: 1   MIRM-TLGEIAGITGGRLVNSDGSAEVTASVEYDSRKVVPGGLFVAFPGERVDGHDFAS- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVG 118
                  +V      V        P   V+D L A+  LA     R    T++ +TGS G
Sbjct: 59  ------AVVAAGAAGVLGTRDTGEPGVVVEDSLRAVATLAHEVVARLPELTVVGLTGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTK+ +   LS +  T A  GS NN +G P T+ +   D  F + E+G   +G IR L
Sbjct: 113 KTTTKDYIGQLLSRLGPTVALPGSLNNELGFPYTVLQAGADTRFLVLEMGARGVGHIRHL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T + RP I V+  I  AH+  F  +E  A AK E+ E L +TG   LN DD+    + ++
Sbjct: 173 TGIARPSIGVVLNIGAAHIGEFGSVEGTALAKGELVEALPQTGVAVLNADDALVSAMASR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +    + G    A            ++   ++   +   V     G H   N L 
Sbjct: 233 TGARVVTVGEAAGAQLRAVDVTLDPA---GRASYVLEHGERRGTVRLRVAGRHQVANSLS 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +        D  + ALS       R             T+ID+SYNANP+S  AA+ 
Sbjct: 290 AAAVALTAGLAFDDLVTALSEMSMVSDRRMD--VFERPDGVTVIDDSYNANPSSTAAALR 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+ +S     R  AVLG M E+GE   S H ++  + +   +  +     +   + D  
Sbjct: 348 ALAAMSA--GRRTTAVLGYMAELGEFEVSGHAEVGRLAAELGVDRLIAVAENARPILDGA 405

Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      ++         +Q  L   DVV+VK S     + + + L 
Sbjct: 406 AEVGAWRGTARFAADQAAAIEILQDDLRADDVVLVKGSR-YRTWDVADWLR 455


>gi|254420158|ref|ZP_05033882.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
 gi|196186335|gb|EDX81311.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           subfamily [Brevundimonas sp. BAL3]
          Length = 476

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 154/463 (33%), Positives = 218/463 (47%), Gaps = 12/463 (2%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PLWT  ++  A  G   G      + G++ +SR I   + F A+KG   DGH+F  +A  
Sbjct: 8   PLWTAAEVAAATGGVLHGD--DRPITGLTYNSREIVAGDLFLALKGAR-DGHEFAANAFA 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTT 121
            GA   +V   +             V D L  L  L VAAR R       A+TGSVGKT+
Sbjct: 65  AGAAAALVERPVEGGAS------VVVPDTLHGLEALGVAARERAPHVKRGAVTGSVGKTS 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             + +   L      +A I SYNNHIGVPLTLARMPV+    +FE+GM+  GEI  L+  
Sbjct: 119 VTQAIKAGLDLAGPAHASIKSYNNHIGVPLTLARMPVETRRAVFEIGMNAPGEIAPLSRF 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V PH A +TT+ P H+  F+  E   + +          G   +   D  F  +   +  
Sbjct: 179 VAPHAACVTTVGPVHIEAFADGEAGVAREKAAIFQGLVPGGTAVANGDVAFSGVLCDAAR 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG     D +L  ++  +E + +  +L G+ ++      G H   N L  L 
Sbjct: 239 AVGARLVVFGTDPGHDARLLDFRPDAEGAAVAAELFGRRIDYRLAQSGAHWGLNSLCVLL 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L   ++T ++AL+ F P  GRG+    A+  G FTLIDESYNANP SM A    L 
Sbjct: 299 MLDALDVALETGLQALAGFQPLAGRGQTRTVAVPGGAFTLIDESYNANPLSMTAGFKSLG 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  GRRI VL DM E+G+ S + H  LA+ +    +  V  +G  +  L DALP S
Sbjct: 359 ARP--TAGRRIVVLTDMLELGDQSHALHEGLAQPIEAAGLDLVHAAGPEMRRLYDALPAS 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               + ET   L     +    GD+V+VK SN      +   L
Sbjct: 417 RRGLWRETAVELAAEASALAEAGDIVMVKGSNGSRASLIARAL 459


>gi|94987542|ref|YP_595475.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731791|emb|CAJ55154.1| UDP-N-acetylmuramyl pentapeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 464

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 17/468 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +   +L    G  +        +++G+SIDSR+I     F  I G   DGH+F+L AV+
Sbjct: 3   LSLDTILSVTGGTLVAPTTGYNSYIDGVSIDSRAITTNSLFICISGNITDGHNFVLKAVE 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  ++ + +     G + +PV  V D L  L  LA AAR  +KA +I ITG+ GKTT 
Sbjct: 63  EGASAILASHNPFE--GEVPVPVILVPDTLNGLKVLAQAARKMTKAKVIGITGTAGKTTV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE++   L+S  K      ++N  IG+  ++     D DF + E+G+S+  ++  L  ++
Sbjct: 121 KELVAQLLTSKGKVAKNYLNFNTQIGMSFSILAAQGDEDFWVMEVGISNPQDMEELGTIL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P IA+I  + P    + SG+ +   A  +                  + +L+K      
Sbjct: 181 TPDIALIINVGP---GHLSGLNKQGVAYHKAQLLRYMKDEGLGIVSLDYPDLVKEVKELR 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +S   ++   +        +      + L    ++V    +G    +++L +  I
Sbjct: 238 SGSLFFSVLDNQCRYYSKYTGIVENGYGTYRLWLDDDIVDVTSPFLGNFGMESVLASATI 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    D+  + L      + R   +      G +  ID+SYNANP SM A I    +
Sbjct: 298 AHKLGVSSDSIKQQLFQAILPQNRFSCF----THGNWLCIDDSYNANPLSMNAVIESTYK 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           +S   +   + VLG+M E+G+ S++ H  + + L+    S ++  G  +  +   L    
Sbjct: 354 LSDEKK-PLVYVLGEMLELGDSSEAEHEKIGKKLAQTGASIIFWKGGMIDNVLIGLKGGG 412

Query: 423 HVHYSE---TMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                E   T       F++  L +G ++V K S S      +++ ++
Sbjct: 413 FKGILEKISTEQEFQSLFLKHRLDEG-IIVFKGSRSNKMEVFVDVFMK 459


>gi|269219537|ref|ZP_06163391.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210779|gb|EEZ77119.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 472

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 126/481 (26%), Positives = 211/481 (43%), Gaps = 21/481 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+ T   ++      + G  P    +  ++ ++ D+R+++  E F AIKG   DG + 
Sbjct: 1   MIPV-TLAQVVADCNATTAGDTPPDVAREQISSLTADTRTVSGGEVFAAIKGARVDGAEL 59

Query: 57  ILHAVQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLR------SKAT 109
              A+  GA  VV +    A + G+    V  VDDV  A+  LA A   R          
Sbjct: 60  AGAALSAGARAVVTSDPSTAVASGADPARVIVVDDVEKAIGALARANLQRARAEGNPALK 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGSVGKTT K++L   + S     A  GS+NN +G+P+T+ R        + E+G 
Sbjct: 120 VVAVTGSVGKTTVKDLLASLVESRGPVIAPPGSFNNELGLPITVLRTDAGTATLVLEMGA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            H+G I +LT +  P  + +  +A AHL  F GI+ +  AK+E+  G  + G + LN DD
Sbjct: 180 DHVGNIDYLTSIAPPDASAVLIVARAHLGEFGGIDNVGRAKSELVTGTREGGVVVLNADD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +   +H   +    +F      D   R     ++       +  +    V   + 
Sbjct: 240 PRVAAMAGLAHGPVL----TFSARGAGDVAARNIDVGADGRASFTLVTPEGEADVKLRLV 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                   +    ++         I   S                  G  T+ID+SYNAN
Sbjct: 296 GEHHVANALAAAALAHSLGIPTAQI--ASTLSAVGAASPHRMDVFEAGGATVIDDSYNAN 353

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P SM+A ++ L ++      R++AVLG+M E+GE S   H  + +  +   ++ +   G 
Sbjct: 354 PDSMRAGLAALERL--GRGRRKVAVLGEMLELGEASLLEHEAIGKAAAQAGVACLVAVGE 411

Query: 410 HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               L  A     +   ++   +G    + ++L  GDVV+VK SN  G +++ + L EE 
Sbjct: 412 EARPLASAAEAEGVDATWAAGPEGALRELDAALAAGDVVLVKGSNGSGVWKVADSLREEK 471

Query: 469 P 469
            
Sbjct: 472 K 472


>gi|315924807|ref|ZP_07921024.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621706|gb|EFV01670.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 476

 Score =  201 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 137/465 (29%), Positives = 215/465 (46%), Gaps = 22/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W+   +    QG  +   P   ++GI+ DSR + P++ +  I G   DGHDFI  A   G
Sbjct: 18  WSVEAVAAITQGKVVH--PGAAIHGIATDSRQVKPRDLYIPIIGARNDGHDFIDAACANG 75

Query: 65  AGLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+ ++D   A  G +   + GV D   A+  LA A R R    ++A+TGS GKTTTK
Sbjct: 76  AAAVLCDSDHLPAWQGKIDAGIVGVADTFEAMRALAAANRARYDIPVVAVTGSAGKTTTK 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +++   LS   +T    G++NN +GVPLTL ++    +  + E+GM+H GEI      VR
Sbjct: 136 DLIASVLSMGYQTMKTQGNFNNEVGVPLTLFQLTPAHEAAVVEMGMNHPGEIARSIGEVR 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHI VIT I  AHL N    E    AK EIF  +EK     +N DD +   + A+ + + 
Sbjct: 196 PHIGVITNIGSAHLENLGSKENTLKAKMEIFGTMEKDDIALINGDDPYLRRIVARDYRVV 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                     +  D  L+      + S +  +  G        GI       +   + I 
Sbjct: 256 RV------GIREPDADLKAEAIREDLSGLYFEADGVPFHFKWPGIHNVYNCLI--AIWIG 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D       L  F P   R +             ++++YNANP SM+AA+  +  +
Sbjct: 308 RYYHLDDAAIQAGLDAFVPSGNRMQMAEVGG----LRFVNDAYNANPESMRAAMDTVCAV 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +   EGR+IAVLGDM E+GE ++++H  + E     ++  +   G     L +    +  
Sbjct: 364 A---EGRKIAVLGDMLEIGENAEAWHRAVGEYAG-THMDVLIGVGEWAETLCEGARGAAP 419

Query: 424 VH---YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            H    + T+D     +      GD V++K+S+S    R+I+ + 
Sbjct: 420 NHPAVAAATVDAAAQILGEIAQTGDTVLIKASHSLALDRIIDRIK 464


>gi|15676328|ref|NP_273464.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis MC58]
 gi|7225638|gb|AAF40854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Neisseria
           meningitidis MC58]
          Length = 455

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 132/475 (27%), Positives = 207/475 (43%), Gaps = 28/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMG----ELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           I VL+++       RI V+GDM E+G    + + + H ++        I   +  G + +
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSV 402

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EAAEKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 455


>gi|330752144|emb|CBL87104.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [uncultured Flavobacteria bacterium]
          Length = 420

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/437 (27%), Positives = 197/437 (45%), Gaps = 28/437 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GI  DSR +   + FFA+KG +++G+ F   A++ GA  +V++ +++ ++   +  VF 
Sbjct: 12  KGICTDSRKLRSGQIFFALKGDNFNGNQFANEALKNGASAIVLD-EIIENLNYNNSDVFF 70

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V +VL  L   A   R +   TII ITGS GKTT KE+L   LS    T+A  G+YNNHI
Sbjct: 71  VKNVLTHLQNFATYHRNKWGKTIIGITGSNGKTTVKELLFNVLSQGYSTHATEGNYNNHI 130

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL  +    D  I E+G +H+GEI+ L  +  P    IT    AHL  F GIE + 
Sbjct: 131 GVPLTLLNIRDSHDIAIVEMGANHIGEIKALCEISLPDYGYITNFGLAHLEGFGGIEGVI 190

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+E++E L+K  +I     +    L              +    +  D     +K   
Sbjct: 191 KGKSELYEHLDKNNSISFVNPNDSIAL-----------KNCNSQNIEFTDGVNFFYKSGL 239

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                       + E++ +  G +   N+L  + I      +     K ++ + P+  RG
Sbjct: 240 LGVS------FGNEEILTNLTGSYQENNVLAAITIGRNFELEDSKIAKGIANYIPQNNRG 293

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           + ++   N    T+  ++YNANP SM+A++     +        + + G + E+GE S+S
Sbjct: 294 QIFKTGKN----TIFLDAYNANPTSMEASLRNAVNLYKKMP--HVYIAGGLLELGEYSKS 347

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H  + E+     I + W  G       +        +           ++   + G+ +
Sbjct: 348 QHQRMIEIFQELEIENAWFIGKQF----EESQMPEKYYNYRDTAQALEALRGKQIHGNFI 403

Query: 448 VVKSSNSCGFYRLINLL 464
            +K S S     L++ L
Sbjct: 404 WIKGSRSFALEALLDEL 420


>gi|158316859|ref|YP_001509367.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
 gi|158112264|gb|ABW14461.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Frankia sp.
           EAN1pec]
          Length = 492

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 119/472 (25%), Positives = 189/472 (40%), Gaps = 22/472 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++  A  G       +   V  + IDSR + P   F A+ G   DGHDF   
Sbjct: 1   MIAL-TLAEVAAATGGRLTAGADRLAPVTSVVIDSRQVGPGALFVALPGERVDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                 G V      V       +P   V D   AL  LA   R  + AT++ +TGS GK
Sbjct: 59  ------GAVAAGAVAVLGARETGVPTV-VADPAAALAALAAHLRDLAPATVVGVTGSAGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A +GS+NN IG+PLTL R   D  F + E+G   +G I  L 
Sbjct: 112 TTTKDLLADLLGRLGPTVAAVGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGIGHIATLC 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RPH+ ++  +  AH+  ++      +A        E           +  + L A  
Sbjct: 172 AVARPHVGLVLNVGSAHVGEYADGRNGIAAAKG-----ELAEAATGLVVLNADDPLVAAM 226

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + +FG++  AD +  + +   +       L                 Q     
Sbjct: 227 AGRAGAQVVTFGRAAAADVRAERVEVGGDG-RAAFDLLAGGERHRLRLGLVGAHQVANAL 285

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                  +  +  A  A ++   +     R           ++++SYNANP SM+AA++ 
Sbjct: 286 AAAAVATSLGLAPAEAAAALEEARPRSRWRMEVTTTPDGVVVLNDSYNANPESMRAALTA 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L  +   G GR  AVLG M E+G  + + H  L  + +   +S +   G     +  A  
Sbjct: 346 LMDMR--GAGRAWAVLGPMGELGADADAAHDTLGRLAAGLGVSRLVAVGAGARRVHQAAE 403

Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +    +   +D     + + +  GDVV+VK+S S G  R+   L  +
Sbjct: 404 HEGAWAGESTWVPGVDEAVALLAAQVRPGDVVLVKASRSFGLERVATGLTAD 455


>gi|325134883|gb|EGC57516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M13399]
          Length = 452

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVDPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|303327352|ref|ZP_07357793.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862292|gb|EFL85225.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 465

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 96/450 (21%), Positives = 177/450 (39%), Gaps = 16/450 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V  +  DSR   P   F  + G   DGHDF   AV++GA  V+ +      +  ++ PV
Sbjct: 1   MVTCVVTDSREARPGALFVCVPGERADGHDFAARAVEQGAAAVLASRP----LPDVAAPV 56

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D + AL  LA   R +++A ++ +TG+ GKT+ KE L   L+   KT     ++NN
Sbjct: 57  LLVEDTVRALGSLAALWRGKTRAKVVGVTGTAGKTSLKEALAQVLAVRGKTARNALNHNN 116

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            IG+P T+     D DF + E G+SH G++  L  ++RP + +I  + P H         
Sbjct: 117 QIGMPCTVLNTDGDEDFWVIEAGISHAGDMDELAPVIRPDLGLILNVGPGHTEGLGDRGV 176

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                  +    +    +             A    L   +  +      AD+     + 
Sbjct: 177 AWHKARLLAHLAQGGLGLVSADYPDLVREAGATGAKLRFFSAGAHEVEYRADYVGPATEA 236

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E +   +               +  A     ++ + +       +  + ++    +  
Sbjct: 237 GGEDATRGLYRLWLDGVRCDAVTPFQGAYGAENSIAVAAAAHLLGLSPAE-IAEGLGRAQ 295

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              +       G + +ID++YNANP SM+  +   +  +       + VLG+M E+G ++
Sbjct: 296 LPPQRFNRERVGAWEIIDDTYNANPLSMRRMLETAAGQA--RGRAFVPVLGEMGELGAVA 353

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI------HVHYSETMDGLFLFIQS 439
           ++ H +L  +L+    S V+  G H   ++  L R         V   E+    +  +  
Sbjct: 354 EALHEELGRLLADLGPSAVFWKGGHADEVRAGLARGGYDGPWLPVDGPESFMAAWRELAE 413

Query: 440 ---SLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  G ++  K S+      L+    E
Sbjct: 414 RKLDGKRGGLLFFKGSHFNRLETLLTAFRE 443


>gi|84625264|ref|YP_452636.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|84369204|dbj|BAE70362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
          Length = 503

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 130/510 (25%), Positives = 201/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  IA  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGIAQTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++      +G    AD   R+ +  +  +   +       +V     G H  
Sbjct: 234 EQQLQAQPVQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPST 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|58583452|ref|YP_202468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58428046|gb|AAW77083.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 503

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 129/510 (25%), Positives = 200/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGMWF 233

Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A   +      +G    AD   R+ +  +  +   +       +V     G H  
Sbjct: 234 EQQLQAQPAQGRCIVRYGLQIGADITARELQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETSTQQHASGNTQEHAVIHQQKSPST 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|114321346|ref|YP_743029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227740|gb|ABI57539.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 451

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 141/461 (30%), Positives = 208/461 (45%), Gaps = 24/461 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++ +   G   G      V  + +DSR +AP   F A+ G   DGHDFI  A ++G
Sbjct: 4   FTLQEVAEWTGGTRHGDA--VTVGEVGLDSRGLAPGGLFVAMAGERVDGHDFIADAARRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V  D     G   +PV  V D   AL  L  A R R  A ++ +TGS GKTT KE
Sbjct: 62  AAAALVERD-----GDWPLPVVRVADTRAALQALGAAWRRRLAARVVGVTGSNGKTTVKE 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L+    T A  G+ NN +GVPLTL R+  +  + + E+G +  GEI  LT +  P
Sbjct: 117 MIAAILARRGATLATRGNLNNELGVPLTLLRLDREHRYAVIEMGANAPGEIARLTAIAAP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT   PAHL  F  +  +A AK E+F GL   G   +N DD       A    +G 
Sbjct: 177 EVAVITNAGPAHLEGFGDLAGVARAKGELFLGLPDAGVAVVNADDPQAPTWYA---LVGD 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG+  +AD +             E+Q+ G    V     G H   N L    +  
Sbjct: 234 RRCLRFGRGADADVRATAETA---GGHFELQIPGGRHPVRLPLPGRHNVMNALAAAAVAV 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +   +  L       GR    +    +    ++D++YNANPAS++AA+ VL+   
Sbjct: 291 ALEVPLGDIVAGLEACSGVAGR---LQWRTGREDCRILDDTYNANPASLQAALDVLA--- 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G R  VLGDM E+G  +++ H +  E      +  ++  G    A   A       
Sbjct: 345 -AEHGERWLVLGDMGELGAGAEALHAEAGEAARRAGVHRLFAVGTLAAAAARAFGEGGR- 402

Query: 425 HYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLL 464
            + +  D   L    + + G+V V+VK S   G  R++  L
Sbjct: 403 -HFDDRDS-LLAALLAELSGEVRVLVKGSRFMGMDRIVAGL 441


>gi|326332501|ref|ZP_08198774.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325949691|gb|EGD41758.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 468

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 134/451 (29%), Positives = 195/451 (43%), Gaps = 23/451 (5%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++   + G  IG      V+    ID R   P   F A  G H DGHD+   A + GA 
Sbjct: 2   DEIASLVGGKVIG-DGSVTVSAPAVIDGRQADPGGLFVAFAGEHTDGHDYAPQAAEAGAV 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            V+ +          ++P   VDD   AL +LA      LR   T++AITGS GKT+TK+
Sbjct: 61  AVLGSRP-------TTLPTVVVDDAQAALQRLAAHVVALLRDGLTVVAITGSQGKTSTKD 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   LSS   T A  GS+NN +GVPLT+ R      F + E+G  H+G+I  LT LV P
Sbjct: 114 MIEAVLSSAAPTVATSGSFNNELGVPLTMLRADATTRFLVLEMGARHIGDIAELTGLVAP 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T +  AHL  F   E IA AK+E+  GL   GT  L+ DD     +   +    +
Sbjct: 174 DIAVVTNVGQAHLGEFGSREAIAVAKSELVRGLAGGGTAVLHADDPRVLAMSDLTDGPVL 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FG  + A  ++R      ++                  + +  A   L      +
Sbjct: 234 ----TFGAGERAGVRVRDLAL--DRLGRPSFALRHDDATAVVTLPFVGAHWALNAAAAAA 287

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A      +A +  +       R       G  TL+++SYNANP S +A +     ++
Sbjct: 288 AGLAAGVGLGQAATALNTASISKWRMELRALSGGATLLNDSYNANPESTRAGLDA---LA 344

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                RRIAVLG+M E+GE S+  H ++    +      V   G     + D        
Sbjct: 345 AIEARRRIAVLGEMLELGETSRDAHHEIGTYAATR-ADLVLTVGEAAAVIADGA--GAKA 401

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                      +++S L  GDVV+VK S   
Sbjct: 402 VALPDNAAAIDWLRSHLAPGDVVLVKPSRGA 432


>gi|119717291|ref|YP_924256.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
 gi|119537952|gb|ABL82569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Nocardioides sp. JS614]
          Length = 461

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 204/470 (43%), Gaps = 24/470 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   + + + G  +   P   V+  +  DSR   P   F A+ G H DGHD+       
Sbjct: 4   MTLGKIAKVVGGT-VAGDPDIVVDAPAYVDSRQAVPGGLFVAVVGEHVDGHDYAA----- 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+ +    A       P   V D + AL KLA     R  AT++A+TGS GKT TK
Sbjct: 58  GAHAVLGSRPTEA-------PTIVVRDPIPALGKLAAYVVRRLDATVLAVTGSQGKTGTK 110

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + L   LS+   T A  GS+NN +G+PLT+ R   +  + + E+G   +G I+ L  +  
Sbjct: 111 DYLARILSAAGSTVATSGSFNNELGLPLTVLRAHPETRYLVLEMGARRIGHIKHLCEIAP 170

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A +  +  AH+  F   + IA AK EI   L+  GT  LN  D     + +++ A  
Sbjct: 171 PDVAAVLNVGTAHIGEFGSRDSIAFAKGEIVAALQPEGTAVLNAGDPLVAEMTSRTRA-- 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G       +         +   E+    +   V     G H AQN L    + 
Sbjct: 229 --RVLTWGPDDADVSERGSEVDDLGRPSFEIGYDDEWYPVRLQQSGLHQAQNALAAATMA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +   +      LS          R           +++++YNANPAS+ AA+  L+ I
Sbjct: 287 LAVGIPLADIAAGLSAATA--SSPMRMEVHERADGLIVVNDAYNANPASVVAALESLAVI 344

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
                 R +AVLG+M E+G  S   H+ +    +      V + G     + + L     
Sbjct: 345 GRRRHRRTVAVLGEMLELGRESFDGHVRVGRAAARLGTDIVVVVGAAAGGIVEGLEAVAA 404

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                  +E ++    +++ +++ GDVV+VK+S+    + + + LL+  P
Sbjct: 405 WRGDGVVAEEVEEALEWVRENVLSGDVVLVKASHGVALWEVADALLDTDP 454


>gi|332287785|ref|YP_004422686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|325506916|gb|ADZ18554.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci 6BC]
 gi|328915043|gb|AEB55876.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase, putative
           [Chlamydophila psittaci 6BC]
          Length = 436

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + +
Sbjct: 13  KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 70

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+
Sbjct: 71  IVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNS 130

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   + 
Sbjct: 131 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNF-PDQG 189

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     E    L  +    L  D  ++     +S +    +   +      D     + +
Sbjct: 190 VQGIAEEKSHILRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY------DETADFYYK 243

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  + +      ++            N+L++L +  +L   VD  I +         
Sbjct: 244 AIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 303

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++      Q    +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G  S
Sbjct: 304 RFEQSVRNGIQ----IINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNHS 357

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A    L   S ++  G   L ++  L   +  V +  +  G+   ++  +  G
Sbjct: 358 EEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQG 416

Query: 445 DVVVVKSSNSCGFYRLI 461
           D+V++K S S     L+
Sbjct: 417 DIVLLKGSRSLALESLL 433


>gi|329943205|ref|ZP_08291979.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
 gi|313848357|emb|CBY17361.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila psittaci RD1]
 gi|328814752|gb|EGF84742.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family
           protein [Chlamydophila psittaci Cal10]
          Length = 448

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + +
Sbjct: 25  KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+
Sbjct: 83  IVVNDTTEALKEAGESQSHLFQGTIVGITGSIGKTTTKAFAKTFLSSVYRVYASPKSYNS 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT IA  H+ NF   + 
Sbjct: 143 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNIADQHVMNF-PDQG 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     E    L  +    L  D  ++     +S +    +   +      D     + +
Sbjct: 202 VQGIAEEKSHILRNSRVQLLPKDSPWYSYFMKQSVSAEKFSFAFY------DETADFYYK 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  + +      ++            N+L++L +  +L   VD  I +         
Sbjct: 256 AIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++      Q    +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G  S
Sbjct: 316 RFEQSVRNGIQ----IINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNHS 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A    L   S ++  G   L ++  L   +  V +  +  G+   ++  +  G
Sbjct: 370 EEGHTVVANKA-LSKASIIFFIGEKWLPIRHLLKHDTCEVSFYPSAQGIEEILKKVVQQG 428

Query: 445 DVVVVKSSNSCGFYRLI 461
           D+V++K S S     L+
Sbjct: 429 DIVLLKGSRSLALESLL 445


>gi|294101814|ref|YP_003553672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616794|gb|ADE56948.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Aminobacterium
           colombiense DSM 12261]
          Length = 468

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 120/474 (25%), Positives = 205/474 (43%), Gaps = 18/474 (3%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M   LW   DL ++I     G     P  F    + DSR + P  AF AI+G   DGHD+
Sbjct: 1   MKWQLWKVSDLAESIGASWWGEDIILPDFF----TADSREVRPGAAFVAIRGNAEDGHDY 56

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLR-SKATIIAIT 114
           I  A+ +GA L++     +    S+    V  V+D +  L ++A A         +IAIT
Sbjct: 57  IKDALHQGASLIIAEKGRIPQGLSIRDRAVIEVNDSVVDLARMASAYLSACLPDEVIAIT 116

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GSVGKTTT+E+L      +   +    S+N  IG  LT+  MP   +  I E+G +  GE
Sbjct: 117 GSVGKTTTREVLKKCFEGMPLVFGAEKSFNTLIGCSLTILAMPAGTNVLILEMGTNKPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  +     P   +IT ++ AHL     +E + +AK EI        T+  N D+     
Sbjct: 177 IEEMVQYFPPTRCIITEVSSAHLEGLVTLEGVIAAKMEITRS-PHLKTLIFNADNENLAN 235

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              + +    K      K +    Q   +        ++  ++ +   +     G     
Sbjct: 236 AAGQVYGTCKKIGVGVRKGEVRICQST-FDLVENLPRLKTTIRWEDGVISDLYCGLWGTH 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +  +++         +AL           R R    +    +ID+SYNANP+SMK
Sbjct: 295 NSLSLVYALTLYRELGYPLEEALRNLETMTSLPGRGRVFSTRAGAVIIDDSYNANPSSMK 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A+++  S +    +GR++A+LG M E+G+     H ++    S + +  ++L G      
Sbjct: 355 ASLNTFSTV--EVKGRKLAILGSMKELGKEESVLHEEILR--STHFLDALFLVGEEWKVP 410

Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +P      +     +    + +   +  GD V++K S+S    +++ +L+E
Sbjct: 411 LEKMPEHERSKIVIVSKVQSFAVELAKMIRSGDGVLIKGSHSHHLEKVVLILME 464


>gi|108804334|ref|YP_644271.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108765577|gb|ABG04459.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 454

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 122/463 (26%), Positives = 194/463 (41%), Gaps = 20/463 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++ +AI     G       +G ++DSR++   E FFA++G   DG DF   A     
Sbjct: 5   TLSEISRAIGARLHGTDGGERAHGAAVDSRAVRGGELFFALRG-RLDGADFAPDARA--- 60

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-ARLRSKATIIAITGSVGKTTTKE 124
                      +   L +P   V+D L AL +LA    R  + AT++ ITG+VGKTTTK+
Sbjct: 61  ----RGAVAAVADRPLEVPTLVVEDPLRALQELARWSLRREASATVVGITGTVGKTTTKD 116

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            L   L S  +      G+ NN IG+PLT+     D +  + E+G +H G+I FL  + R
Sbjct: 117 ALATILRSAGRKITATQGNLNNEIGLPLTVLNAAPDTEVMVLEMGATHPGDIAFLCGIAR 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+ V+T I+P HL +F  ++++A  K E+   L + G               A      
Sbjct: 177 PHVGVLTAISPVHLDSFGSLQKLAETKGELARSLPEDGAFVSPVGVPE----AAVGGGRA 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +FG    + +     ++  E     V   G+S  V     G H+ + +L   G  
Sbjct: 233 FGRHITFGDEGASLW-ASGVEETEEGLRFTVHAFGESAAVRAPVHGTHLVRPLLAATGGA 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++   + LS        G R      +    L D+SYNA+PA+M A +   ++ 
Sbjct: 292 LALGVALEECARGLSR---LRRTGLRGDLLRLRDDILLYDDSYNASPAAMAAVLRYGARQ 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +     R +AVLG M E+G  ++ +H +   + +   +  +   G       +A      
Sbjct: 349 ASSSGRRLVAVLGGMFELGPGAREYHREAGRLAAEVGVDLLVCVGEEAGWYAEAFDGEK- 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                        +   L  GD V+VK S       L   L E
Sbjct: 408 -VLYRDAGEAARELPHLLRPGDYVLVKGSRGVRLDTLTGRLKE 449


>gi|254673384|emb|CBA08673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha275]
 gi|325208769|gb|ADZ04221.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 452

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|86740117|ref|YP_480517.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
 gi|86566979|gb|ABD10788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Frankia
           sp. CcI3]
          Length = 467

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 119/476 (25%), Positives = 178/476 (37%), Gaps = 21/476 (4%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G       P   V  + +DSR +     F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVASATGGRLDAVPDPGVTVRSVVVDSREVRDGALFVALAGSRVDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                   V      V +  S+  P   V D   AL  LA   R  + AT++A+TGS GK
Sbjct: 59  ------AAVAAGASAVLAARSVGEPAVIVPDPPSALAALAAYVRDLAAATVVAVTGSAGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A  GS+NN IG+PLTL R   D  F + E+G    G I  L 
Sbjct: 113 TTTKDLLADVLGGLAPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGPGHIATLC 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP + V+  +  AHL  ++                E           +  + L A  
Sbjct: 173 AVARPAVGVVLNVGSAHLGEYAD-----GRLGIAAAKGELAEAASEAVVLNADDPLVAAM 227

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + +FG+   AD +                L       V  G+         + 
Sbjct: 228 AVRTTAEVITFGEGGRADVRAGAVDVDRLGRASFDLLAHGEHHRVTLGLVGAHQVPNALA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              V+I        + A         R  R           +++++YNANP SM+AA+  
Sbjct: 288 AAAVAIRLGLSPDRVAAALSAARPRSR-WRMEVTSTAAGVVVVNDAYNANPESMRAALKA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL- 418
           L  +   G+GR  AVLG M E+G+ + + H  L        +  +   G     +     
Sbjct: 347 LVDMR--GKGRAFAVLGPMGELGDAAAAEHDVLGRFAVRLGVDRLIAVGPAARHIHLGAS 404

Query: 419 ---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                          +     + +     DVV+VK+S S G  R+   L+  F  +
Sbjct: 405 LEGSWDGESVEVTDAEEAVALVAAQAGPDDVVLVKASRSFGLERVAEALVTRFGVL 460


>gi|32490959|ref|NP_871213.1| hypothetical protein WGLp210 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166165|dbj|BAC24356.1| murF [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 463

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 226/473 (47%), Gaps = 26/473 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M  L+   D+   +    IG      +N ISIDSR I       F AIKG  ++G  FI 
Sbjct: 1   MINLY-LKDIALILNAKLIGN--NCKINSISIDSRKIFNKKNCLFIAIKGKKFNGECFIK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            +++ GA  V+      A   +++IP   V + + +L +L+   R  SKA IIAITGS G
Sbjct: 58  ESIKNGAVAVI-----NARKVNINIPHLIVKNTIISLLRLSKWIRENSKAKIIAITGSSG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+ KE++   L++   T A   ++NN+IGVPLTL R+  + +F I E+G +  GEI+  
Sbjct: 113 KTSVKEIIFNILNTFSNTIATKKNFNNNIGVPLTLLRLNKNHNFAIIEVGGNKFGEIKTS 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           ++L++P IA+I  I+ +HLS F  I  ++ AK EIF G++      +  + +     K  
Sbjct: 173 SNLIKPDIALINNISESHLSGFKSINGVSKAKEEIFSGIQGKKNGIIVLNYN-SNDWKEW 231

Query: 239 SHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              L    ++ FG  KN          K+ +      +  Q +  EV    IGYH   N 
Sbjct: 232 KKKLKDNLVFWFGIIKNKKKYFYLKNIKKENFCIKFSISTQKEECEVSLPLIGYHNLFNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  + I  ++ A +++    L   +P + R        N     +ID+SYNAN  SM +A
Sbjct: 292 MAAIAISFLVGASMESIKYGLKKSYPFKRRLFPIFLNKN---KIIIDDSYNANVGSMISA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ISVL+ +     G +I ++GD+ E+G+  +   H ++   +S   I+ V+  G+      
Sbjct: 349 ISVLNNMP----GYKIIIIGDILELGKQKEIIIHKNIGFFISKSKINKVFSIGYLS-YFS 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLINLLLE 466
               +     +   +D L       +       V++K SN    Y ++ +L E
Sbjct: 404 SIFSK--KGKHFYNIDYLISETIKMISRYPIITVLIKGSNKTDAYNIVKMLQE 454


>gi|288919049|ref|ZP_06413390.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
 gi|288349589|gb|EFC83825.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EUN1f]
          Length = 510

 Score =  200 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 118/467 (25%), Positives = 189/467 (40%), Gaps = 29/467 (6%)

Query: 14  IQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            +G      G+ P   V  + IDSR +AP   F A+ G   DGHDF           V  
Sbjct: 13  TRGRLADCAGVDPAAPVTSVVIDSRQVAPGSLFVALPGERVDGHDFAA-------AAVGA 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +   + +P   V D    L  LA   R R  AT+I +TGS GKTTTK++L   L
Sbjct: 66  GALAVLAARPVGVPAVIVTDPAVGLAALAATVRDRYTATVIGVTGSAGKTTTKDLLADLL 125

Query: 131 SSIKKTYAC---------IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               +             IGS+NN IG+PLT+ R   +  F + E+G   +G I  L  L
Sbjct: 126 GGHGEAGGPGGLGATVAAIGSFNNEIGLPLTMLRAEPETRFVVLEMGARGIGHIATLCAL 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP + ++  +  AH+  ++      +           +  + LN DD     + A+  A
Sbjct: 186 ARPQVGLVLNVGSAHVGEYADGRRGIAVAKG-ELAEAASELVVLNADDPLVASMAARVQA 244

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG   +AD +  + +  +        L                 Q       
Sbjct: 245 SA--KVVLFGTGASADVRAERIEVDAAGRAAFDLLASGEC-HRLRLGLVGAHQVANALAA 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             + +   +  A  A ++   +     R       G   +++++YNANP SM+AA++ L 
Sbjct: 302 AAAAIGLGLAPADAAAALERARPRSRWRMEVTTTPGGVVVLNDAYNANPESMRAALAALL 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I   G+GR  AVLG M E+G  +   H +L  +++   +  +   G   L + +A    
Sbjct: 362 DIR--GDGRAWAVLGPMGELGAGAAEAHRELGRLVASLGVPRLVAVGPGALGVHEAARED 419

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +    +   +D    F+   +  GDVV+VK+S S G   +   L
Sbjct: 420 VAWAGESTWVSGVDEAVAFLGGQVRPGDVVLVKASRSFGLEAVAAGL 466


>gi|188575294|ref|YP_001912223.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519746|gb|ACD57691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 503

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 129/510 (25%), Positives = 201/510 (39%), Gaps = 60/510 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRTLANGSLYSALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V       + +LS+P   V D   AL ++A + +      ++A+TGS GKT
Sbjct: 58  VARGASGLLVER----LLPALSVPQVVVKDTELALARIAASMQRDRVTRVLALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L           YA  G+ NN IG+PL +   P D DF I+E+G    G+I
Sbjct: 114 SVKALLLSILQEAGRVEGTTVYATPGNRNNEIGLPLAVIAAPDDADFAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVAVINADDAFGIWF 233

Query: 236 KAKSHALGIKTIY--SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++      +G    AD   R+ +  +  +   +       +V     G H  
Sbjct: 234 EQQLQAQPVQGRCIVRYGLQIGADITARQLQLQAGAAQFTLVTPQGEAQVALPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+  HP  GR              LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPVIAAGLAQAHPVAGRQIAQTLPSG---AVLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGAEGLALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSL------------------VDGDV--------- 446
              A      V    T   L   +Q+ L                   +  V         
Sbjct: 407 AAQAFGDGGRV--FATHGELIDALQADLVDTASRETRTQQHASGNTQEHAVIHQQKSPST 464

Query: 447 ----------VVVKSSNSCGFYRLINLLLE 466
                     ++VK S      R++  LL 
Sbjct: 465 AALSGAASITILVKGSRGSAMDRVVTALLA 494


>gi|332521388|ref|ZP_08397844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
 gi|332043116|gb|EGI79314.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Lacinutrix
           algicola 5H-3-7-4]
          Length = 400

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 118/421 (28%), Positives = 198/421 (47%), Gaps = 23/421 (5%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           FFA+KG +++G+ F   A++KGA  V+++     +          V++VL  L +LA   
Sbjct: 2   FFALKGDNFNGNTFSTEALKKGAKYVIIDELEYNTSSQT----ILVENVLETLQQLATYH 57

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      II +TGS GKTTTKE++   LS    T A  G+ NNHIGVPLTL  M  D + 
Sbjct: 58  REYLNIPIIGLTGSNGKTTTKELINTVLSKKYNTTATKGNLNNHIGVPLTLLSMTKDTEI 117

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GI E+G +HL EI FL+++ +P    IT    AHL  F  I+ + + K+E++  L     
Sbjct: 118 GIVEMGANHLKEIEFLSNIAKPDFGYITNFGKAHLEGFGSIQGVINGKSELYNYLITYKK 177

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                 D   +           K      KS  ++    +      ++   V L+ +   
Sbjct: 178 HIFFNADDTIQ---------NEKLSNYNLKSGFSNQTQNQLNINFLEANPFVTLKFQDQI 228

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG +   N+   + I S           A+  + P   R       +N+    +I
Sbjct: 229 ITSQLIGKYNFTNISAAITIGSYFNVKFSDIKAAIENYAPTNNRS----QIINKNSNKII 284

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            ++YNANP SMKAA+   S ++   +   IA LGDM E+G+ +Q+ H ++ ++++  NI+
Sbjct: 285 LDAYNANPTSMKAALENFSNLNATYK---IAFLGDMFELGDEAQAEHQNITDLITTLNIN 341

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            V+L G +  + K     +  +   +T + L     +  +    +++K S      R+++
Sbjct: 342 TVYLIGTNFNSTKT---ENKKIKQYKTFEALKKSFNTIDITNATLLIKGSRGMALERIVD 398

Query: 463 L 463
           L
Sbjct: 399 L 399


>gi|121635450|ref|YP_975695.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
 gi|120867156|emb|CAM10923.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis FAM18]
          Length = 479

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 28  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 85  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 261 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 317 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 374 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479


>gi|304386670|ref|ZP_07368952.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339255|gb|EFM05333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 452

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+    +       V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLLMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE   +  H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAVMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|329895275|ref|ZP_08270917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
 gi|328922397|gb|EGG29740.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase [gamma
           proteobacterium IMCC3088]
          Length = 449

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 134/466 (28%), Positives = 216/466 (46%), Gaps = 25/466 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   +   L   +   + G     ++ G++ DSR +   + F A KG   DGHD++  A
Sbjct: 1   MNTRISSDQLAFLLDAQTRGSA--AYIQGLNFDSRHVQSGDLFVAFKGDKADGHDYVEAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V          + I    V+D L AL + A + R  S AT + ITGS GKT
Sbjct: 59  RARGAVAALVER-----WVPVEITQIRVEDCLSALAEWAKSVRQSSAATFVGITGSAGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T K  +   LS+   T A  G+YNN IGVPLTL  +  +  F + E+G    G+I +L  
Sbjct: 114 TVKSTVAHILSAQGATSATQGNYNNEIGVPLTLLELGPEDQFAVVEMGARFKGDIAYLCA 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV P++ ++T + PAH+  F  I+ IA  K EIF+G++ T    +  D  +    + +  
Sbjct: 174 LVEPNVRILTAVLPAHMETFGSIDVIAQTKGEIFDGMKPTDVAVMPGDSPYLSAWQTR-- 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I +FG S+  D Q+            + ++      EVV   +G H A N+  +
Sbjct: 232 --AAGKIVTFGYSEANDIQILDVSDRGFSGLALRLRTPAGECEVVSGLVGAHNASNIAAS 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G        +DT +   +     +    R    +     TL+D+SYNA+P +M+ A++ 
Sbjct: 290 VGACLACGMSLDTIV---AQVASVQAVQGRLARIILSDKTTLVDDSYNASPEAMRQALAA 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L        G R+A+LG M E+G  S  +H  + E     +++ +WLSG     L D+  
Sbjct: 347 LE----RSPGARLAILGPMAELGVNSDEYHRQVIEQALAGSVNEIWLSGASWPDLTDS-- 400

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               + Y      +   ++S  V  D ++VK+S S    R+ + L 
Sbjct: 401 ---RLRYFADTQAIIDELRSVPV-FDWILVKASRSARLDRVASHLQ 442


>gi|319764376|ref|YP_004128313.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|330826595|ref|YP_004389898.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
 gi|317118937|gb|ADV01426.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans BC]
 gi|329311967|gb|AEB86382.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Alicycliphilus denitrificans K601]
          Length = 463

 Score =  200 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 121/473 (25%), Positives = 196/473 (41%), Gaps = 27/473 (5%)

Query: 2   NPLWTFHD---LLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            P+ T      LL+A I    +       +  +  D+R++A  + F A+KG  +D +  +
Sbjct: 7   TPMMTLRQAFDLLRARIPAARLVGDGATPLMRVHTDTRTLAAGDLFVALKGERFDANSLL 66

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A                ++ +  +P   V D L AL  LA   R +    ++A+TGS 
Sbjct: 67  PQAR----AAGAAAAIAHGALEAAGLPGVEVPDTLAALGVLAAGWRAQRTLPLVAVTGSN 122

Query: 118 GKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTT  +M+             A  G++NN +G+PLTL R+    +  + ELGM+H GEI
Sbjct: 123 GKTTVTQMIASVLRAWKGDAALATQGNFNNDVGLPLTLLRLRPAHEAAVVELGMNHPGEI 182

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +L  + RP +A++      HL     +E +A     +   L   G       D+F  L 
Sbjct: 183 AYLAGIARPTVALVNNAQREHLEFMHTVEAVARENGSVLAALCAGGVAVFPAADAFTPLW 242

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      G     +FG    AD +    +       + VQ    + + +    G H   N
Sbjct: 243 RE---LAGAHRCITFG-GDAADVRCAHAQWQDGAWHLRVQTPQGAFDTLLSIAGRHNVTN 298

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L          A +    + L+ F P +GR + +          ++D+SYNANP S++A
Sbjct: 299 ALAAAACALAAGAPLAAIARGLAAFEPVKGRSRAFAVRCQGRAIAVVDDSYNANPDSVRA 358

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+++     G R+ VLGDM E+G     FH +         I  V+  G     + 
Sbjct: 359 AIDVLAELP----GPRLLVLGDMGEVGGQGPQFHAEAGAHARSRGIEQVFALGALSAHVA 414

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRLINLLLEE 467
            A        + E M  L   +++ L  G   V+VK S      R++  + EE
Sbjct: 415 GA-------RHFEDMASLIAAVRAQL-PGVGSVLVKGSRFMKMERVVQAIEEE 459


>gi|325144955|gb|EGC67238.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M01-240013]
          Length = 479

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 28  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 84

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGSVGKT
Sbjct: 85  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKT 140

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 141 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 200

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 201 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 260

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 261 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 317 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 373

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 374 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 430 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 479


>gi|325270857|ref|ZP_08137445.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
 gi|324986812|gb|EGC18807.1| Mur ligase domain protein/alanine racemase [Prevotella multiformis
           DSM 16608]
          Length = 826

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 112/471 (23%), Positives = 188/471 (39%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G   +  ++ +  DSRS+    +  FFA+K    DGH++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKEANISFVLTDSRSLCFPEETLFFALKSERNDGHNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV T     +          V   L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYGRGVRNFVVETVPEDWNRRYPDSNFLKVVGSLEALQRLAERHRDEYLVPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMSA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V T +  AH  NF  ++     K  +F   +         DD        
Sbjct: 178 LHDIIQPTIGVFTCLGSAHQENFPSLDAKCREKLHLFHDTQAIVYSL---DDEVLNRCLD 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G K  +S    K   +     K+  E +       GK  +     I      N +
Sbjct: 235 EYDYKGEKLCWSAKDEKAVFYIKSIEKKDVETTVTYTWKNGKEAQYRLPFIDDASVVNSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                   L        + +++  P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TCAVTALQLGVTPAALGERMALLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +L  + A
Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLGQRSA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  H+  T++      + ++L   +V+++K +   GF RL  LL+++
Sbjct: 412 FRHLGKKHFFATVNAFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461


>gi|218768816|ref|YP_002343328.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
 gi|121052824|emb|CAM09171.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis Z2491]
          Length = 452

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|78356085|ref|YP_387534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218490|gb|ABB37839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 471

 Score =  199 bits (506), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 110/468 (23%), Positives = 186/468 (39%), Gaps = 20/468 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                +  A+            V +G+  DSR +   E FF I G  +DGH F    ++K
Sbjct: 3   MNLEQIRDALGAVGTLGGADMTVPSGVQTDSRCVRDGELFFCISGERFDGHTFAAEVLEK 62

Query: 64  GAGLVVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA  VV                 PV  V D + AL +LA+  R+ + A +  ITG+ GKT
Sbjct: 63  GACAVVAERPPFSMDEMQDRQDRPVLIVPDTVAALGRLALHHRMGASAVVTGITGTAGKT 122

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KE+L   LS    T     + NN IG+PL++     D  F + E G+S   ++  L  
Sbjct: 123 TVKELLAHVLSVRGATARNHLNRNNQIGLPLSMLAATGDERFWVMEAGISQAADMDELGS 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AV+  +   HLS     + +A  KA + + + + G   ++ D      L     
Sbjct: 183 VLRPDLAVVLNVGQGHLSGLGD-KGVAHYKARLLKHIARGGVGLVSADYPDL--LAEARK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G   ++S        F          +    V+L+ +  E      G + A+N++   
Sbjct: 240 NCGELRLFSAVDPAVPYFCEYAGPAGEGRGLYRVRLESREFETEAPFRGAYGAENVIAVA 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               IL        + L      + R    R     G + +ID++YNANP S    +   
Sbjct: 300 AAAHILGLTSAEIAEGLRTAELPQQRFNCRR----YGRWLVIDDTYNANPLSAGRMVEST 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
           ++ +       + V+G+M E+GE +   H +L   L     + V+  G H   +++ L  
Sbjct: 356 AENA--CGEPVVFVMGEMLELGEAAAQAHTELGRALGRACPAAVFWKGGHGGHVQEGLHA 413

Query: 420 RSIHVHYSETMDGLFLFIQSS----LVDGDVVVVKSSNSCGFYRLINL 463
              +  +   +     F+++     +  G  V+ K S S         
Sbjct: 414 EGWNGPFVP-VADAGAFLRAFGALGIASG-TVLFKGSRSNRLETFAEA 459


>gi|282854262|ref|ZP_06263599.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
 gi|282583715|gb|EFB89095.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes J139]
          Length = 485

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 117/483 (24%), Positives = 183/483 (37%), Gaps = 33/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + I +R + P   F A+ G   DGHDF   A
Sbjct: 1   MRVL-DVATLAQWVEAAPVNDSAQVGPD-VVIGTRKVTPGALFIALPGTRVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+V     A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDMGAAAVLVTRRTDA-----QLPHLVVDDGQAGLSRLARHVVATERER-GMRAIAVTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IGVPLT  R   +  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGVPLTACRSNENTSFLVSEMGTRGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY-------DD 229
           +LT +V P +A++  +  AHL  F   E IA AK EI E L   G   LN          
Sbjct: 173 WLTSIVTPDVAMVLNVGSAHLGEFGSREIIAQAKGEIVEALSVDGWAVLNAADTLVAGMA 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  A                  A+            +    + +      V     
Sbjct: 233 PRTRGHIAWFSPDADHRRPDADIEVWAESTHADDLDRHSFTLAARRGESTWRSPVRLMTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++  I        A ++ +       R +         L+
Sbjct: 293 GAYQVANAVAATAAALAALAMNDDIDDESVTRIAEALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G+ S   + +     +
Sbjct: 353 EDCYNANPDSMAASLTAMGHVLATRRARDPQTRGVAVLGDMLELGQDSARLNAESGRRAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G     + +            T++     +       DVV++K+S     
Sbjct: 413 HAGFDVIIAVGDEAKNIAEGARAEGARVIVSTVEDASGSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRL 460
            R+
Sbjct: 471 ERV 473


>gi|270294455|ref|ZP_06200657.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275922|gb|EFA21782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 838

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 112/486 (23%), Positives = 204/486 (41%), Gaps = 31/486 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  ++   + ++I    +G  P   ++ +  DSRS+    +  FFA+     DG  +I 
Sbjct: 1   MS--YSIESITESIGARRMGNAP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIT 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS---------------IPVFGVDDVLGALNKLAVAAR 103
               +G    V++ +    + +                 +    V + L AL KLA   R
Sbjct: 58  DLYARGVRNFVLSEESFRLMDNGQLTIDNAMQRDDAQSIVNYLIVPNPLKALQKLAEQHR 117

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            + +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    +  
Sbjct: 118 NQFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQSELA 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           IFE G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +
Sbjct: 178 IFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKNCD---VV 234

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N DD F     AKS     +  +S  K       + K ++  + + +  +        
Sbjct: 235 IYNGDDEFVSNCVAKSMLSAREIAWSR-KDMERPLYISKVEKRDDCTVISYRYLDMDNTF 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               I     +N L  L     L    +   + ++   P      R      +    LI+
Sbjct: 294 TLPFIDDASIENSLNCLAACLYLMLPAEQITERMARLEPI---AMRLEVKEGKNNCLLIN 350

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +SYN++  S+  A+  L + S     RR  VL D+ E G+ + + +  +A++++   I  
Sbjct: 351 DSYNSDLGSLDIALDFLYRRSQSKGLRRTLVLSDILETGQNTPTLYRQVAQLVNSRGIER 410

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLI 461
           +   G  + +       +I   +      L   IQ   L  + +++++K +   GF  L 
Sbjct: 411 IIGVGNEISSCAARF--NIEKTFYPDTAALIRAIQRGELRLENEIILIKGARKFGFDSLT 468

Query: 462 NLLLEE 467
            +L ++
Sbjct: 469 EVLEKK 474


>gi|254671177|emb|CBA08291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha153]
          Length = 452

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKSVSRIVTDSRDIQEGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVDPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLASVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAVALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|325142970|gb|EGC65327.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis 961-5945]
          Length = 452

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           + VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 VDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMEMEEVVEALEDK 452


>gi|298369640|ref|ZP_06980957.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282197|gb|EFI23685.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 455

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 128/472 (27%), Positives = 194/472 (41%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + Q +            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQTLN--LPTPSENKPVSRIVTDSRDICAGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSHEDCAALDGA----LKVDDTLAALQTLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLKEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G  +IA AK+EI++GL +             +   
Sbjct: 174 LTQIAKPDAALVNNALRAHVGCGFDGTLDIAKAKSEIYQGLGED----GLALIPCEDEHA 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A                 + D               ++    +   VV    G H   N 
Sbjct: 230 AVFQTTSQGHQQRTFGVDSGDVHAENIVLKPLSCEFDLVCGNERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAATALALAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   +   L +   V+VK S       ++  L  +
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLSHDLPERATVLVKGSRFMKMEEVVEALTNK 452


>gi|330836622|ref|YP_004411263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
 gi|329748525|gb|AEC01881.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Spirochaeta
           coccoides DSM 17374]
          Length = 477

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 109/450 (24%), Positives = 191/450 (42%), Gaps = 26/450 (5%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSL 81
           F+  ++IDSRS      F A+ G   DGH +I  A+ +GA  V+++     +    +   
Sbjct: 34  FIRNLTIDSRSCDAGSLFIALPGSRSDGHLWIPDAISRGATTVLLHESRCGEFATLLDRT 93

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                   + L AL ++A          T I ITGS GKTTTKEML   LS    T    
Sbjct: 94  GTWALVAKEPLHALYRMATEYVSLLNGVTTIGITGSCGKTTTKEMLASILSQEFPTVKTP 153

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+YN+ +G+PL+L ++     +G+FE+G+ H+GE+  +  ++ P+ AV+T I  +H    
Sbjct: 154 GNYNSTLGLPLSLMQIGDHHKYGVFEMGIDHIGEMDTMLGMLAPNHAVLTNIGISHAEKL 213

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             I  I + K ++ +       + ++          A           + G +   D  L
Sbjct: 214 GSISAIMTEKGKLLKNARNGYFMGMDEPSRKAMEHIAGHPQGFWGIHATEGVTGIRDEGL 273

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             W    + +           E+    IG H  ++ L  + +   L    +     L   
Sbjct: 274 LGWTIIYQGT-----------EIHVPAIGKHSLKDALAAISVARHLGVGEEFIKHGLEKV 322

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              EG     R  +  G  T+I++ YNA  +S  + +  ++  +   +G +  VLGDM E
Sbjct: 323 ENLEG-----RSRVVSGDVTVIEDYYNAAASSTTSILDFMA--ATSWKGDKKVVLGDMKE 375

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV---HYSETMDGLFLFI 437
           +G  S   H  +   L L + S V+L G       + L    +     YS+    +   +
Sbjct: 376 LGRYSDRAHEMIGRRLLLASPSSVFLYGTDTKKTWNILRSGGYAGQLVYSDDEHEVNRAL 435

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + ++  GD+V+VK S      + + ++  +
Sbjct: 436 ERNIHRGDLVLVKGSRGMAMEKFLPVITAK 465


>gi|261337516|ref|ZP_05965400.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
 gi|270277915|gb|EFA23769.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium gallicum DSM 20093]
          Length = 535

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/534 (24%), Positives = 202/534 (37%), Gaps = 76/534 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF----------------VNGISIDSRSIAPQEAFF 44
           M P+ T   + QAI    +    Q                     + IDSR       F 
Sbjct: 1   MMPM-TLERVAQAINATLVPASVQSEHGSPVDPSSASPSSAIPTNVVIDSRQAHEGSLFV 59

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           AI G H DGH ++      GA   +V+ +    I   S+    VDD + AL +LA     
Sbjct: 60  AINGEHADGHAYVATLGDSGALAAIVDHE----IPQSSVVQLVVDDTVKALGELARHNLA 115

Query: 105 R-----------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +           +  +I+ ITGSVGKTTTK++L   L  + +T A +GS+NN +G+PLT 
Sbjct: 116 QRRAMAAAHPDAAPFSIVGITGSVGKTTTKDLLHALLGELGETVAPVGSFNNELGLPLTA 175

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            ++     F I E+G +HLGEI  LTH+  P +AV+  +  AHL  F  +E IA AK+EI
Sbjct: 176 LQVGPSSRFLIAEMGANHLGEIANLTHIAPPDVAVVLKVGNAHLGEFGSVERIAQAKSEI 235

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--W 271
             G    G   LN DD     + A +  L            +        +   +    +
Sbjct: 236 VRGEVPGGMTILNADDPHVAAMDAIAPGLVRWFGLEHATEHDDYVTADHVRMDDDGHAVF 295

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH--PKEGRGKR 329
              Q  G   +V     G H   N L    +       +   ++ L              
Sbjct: 296 TLRQSDGAYQQVRLGIPGAHNVMNALAATAVAQYFGLPLRHIVQVLEQVRAISPHRMAIS 355

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +  FTLID+S+NANP SM+A I  ++  +      RIAVLG M E+G    + H
Sbjct: 356 IVRRPERPEFTLIDDSFNANPDSMRAGIDGIAAFNAAEPMLRIAVLGAMLELGPDETALH 415

Query: 390 IDLAEVLSLYNISHVWLSGFHVLAL-------------------------------KDAL 418
             + +     ++  V   G    A                                 D  
Sbjct: 416 EAIGKYAVEQSVDAVIAVGNSNDAHLMTLATALAAGARDAHTADGAASVAEAELQPADLA 475

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVD---------GDVVVVKSSNSCGFYRLINL 463
             ++ +  + + D     + + L             VV++K S++ G   L   
Sbjct: 476 TATVPIAVASSTDEAEQMLDAILAAHHPDGSTADNTVVLLKGSHASGLASLAEH 529


>gi|332295504|ref|YP_004437427.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178607|gb|AEE14296.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 477

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/446 (27%), Positives = 206/446 (46%), Gaps = 20/446 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---- 81
               ISIDSR I  +E F AIKG ++DGH+FI +A+++GA  ++    +     +L    
Sbjct: 42  EFERISIDSRDIKGKELFIAIKGKNFDGHNFIKNALEQGAFGIISELSLAEVANTLGNIV 101

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                    V + + A++ +A   R R +  +I ITGSVGKTTTKE+L   L    +T +
Sbjct: 102 FGTDFSFIKVPNTILAMHDIARGFRQRIE-KVIGITGSVGKTTTKEILKTLL-KGYQTVS 159

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NN IG+PL+L R   +  FGIFE+ M   GEI  L  +  P I +IT IA +H+ 
Sbjct: 160 TFGNFNNEIGLPLSLFRAKKNDKFGIFEMAMRSKGEISQLCSIAMPDIGIITRIAESHIG 219

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E IA AK EI + ++     F             K      K +  FGK   +D 
Sbjct: 220 LLGSMENIARAKGEILDFVDSAFLNFNCKYSRKIFGEMLKDKKGKPKEVIWFGK--ESDL 277

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++  +     S +E+  +  +  +    I     + +L ++ +   L  D +     L 
Sbjct: 278 YIKSHEIFIHGSRLELSGRFGNFVLRAPNIFLPQFEPLLASVAVARFLGLDWNEINDNLQ 337

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            +HP +GR          G   +ID+SYNA   S    +  +  +   G  R+I V GD+
Sbjct: 338 GYHPLQGRF----LIKKLGDQIVIDDSYNATCTSFLKGLETIKSLK-FGNRRKIFVFGDI 392

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFI 437
            E G+ S+  H  + + +   +   V+  G        ++ R+  + +    +D +   +
Sbjct: 393 LEAGDKSRDLHKKVIKKIEELDPFLVYFVGTE---FVKSVGRNSKLRFKNLGIDEVKEDL 449

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
              L   D+V +K SNS   ++++ L
Sbjct: 450 AKILSKEDLVYIKGSNSTKTWKVLEL 475


>gi|45658139|ref|YP_002225.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|45601381|gb|AAS70862.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 466

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 202/443 (45%), Gaps = 31/443 (6%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92
                  F  + G   DGH+FI  A+ KGA   +V  +                 V + L
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150
            AL KLA   R R    +IA+TGS GKTTTKE+L   L +++++       +YNN IG+P
Sbjct: 98  TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            TL ++       + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK
Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI EGL+K G +F      + ++LK K+   G K + +  +   +  Q +      E  
Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSEKIFSILQKKSSGFLLE-- 275

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                   K+ ++  +  G  + +N+ + +  +  +    +   + +  F          
Sbjct: 276 -------YKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSNK----- 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  L  G +++I+++YNAN  SM +++ V  Q++        AVLGDM E+GE S+ FH 
Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLA--DGKEFYAVLGDMKELGEYSKEFHK 381

Query: 391 DLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLV-- 442
            L +  S   N+  ++  G     +++   +         H+  T +GL   I   L   
Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDAFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441

Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464
            +G +V+ K+S      R +  L
Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464


>gi|261378426|ref|ZP_05982999.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145204|gb|EEZ71622.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria cinerea ATCC 14685]
          Length = 452

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 204/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQALN--LPMPSENKSVSRIVTDSRDIRVGDVFFALAGERFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA   R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKVWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAILRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               A       +FG   + D               ++    +   VV    G H   N 
Sbjct: 234 ---MATLNLNTRTFGI-DSGDVHAENIMLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
 gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
          Length = 834

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 112/482 (23%), Positives = 206/482 (42%), Gaps = 27/482 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  ++   + +++    +G VP   ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YSIESITESMGARRVGSVP-ATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLS-----------IPVFGVDDVLGALNKLAVAARLRSK 107
               +G    VV+ +    I S             +    V + L AL KLA   R + +
Sbjct: 58  DLYARGVRNFVVSEESYRDIESGKLKPTANDQSPVVNYLIVPNPLKALQKLAEQHRGKFQ 117

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I ITGS GKT  KE L   +S  +       SYN+ IGVPL++ +M    +  IFE 
Sbjct: 118 IPVIGITGSNGKTIVKEWLHQLISPERAIVRSPRSYNSQIGVPLSVWQMNEQSELAIFEA 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N 
Sbjct: 178 GISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLVLFKNCD---VVIYNG 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD F     AKS     +  +S  K       + K ++  E + +  +            
Sbjct: 235 DDEFISNCVAKSMLSAREIAWSR-KDMERPLYISKVEKKEECTVISYRYLDMDNTFTLPF 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I     +N L  L     L    +   + ++   P      R      +    LI++SYN
Sbjct: 294 IDDASIENSLNCLAACLYLMLPAEKITERMAKLEPV---AMRLEVKEGKNGCLLINDSYN 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++  S+  A++ L + S     +R  VL D+ E G+ + + +  +A++++   I  +   
Sbjct: 351 SDLGSLDIALNFLYRRSLVNGLKRTLVLSDILETGQNTPTLYRQVAQLVNSRGIERIIGV 410

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLINLLL 465
           G  +          +   +    + L   I+   L  + +++++K +   GF  L  +L 
Sbjct: 411 GNEIATCAARF--DVEKSFYPDTNTLIRAIERGELRLENEIILIKGARKFGFDALTEVLE 468

Query: 466 EE 467
           ++
Sbjct: 469 KK 470


>gi|88802248|ref|ZP_01117775.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
 gi|88781106|gb|EAR12284.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Polaribacter
           irgensii 23-P]
          Length = 418

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 117/434 (26%), Positives = 189/434 (43%), Gaps = 35/434 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            D+RSI     FFA+KG +++G+ F   A+ +GA L +++     +          VD+V
Sbjct: 18  TDTRSIRKNTVFFALKGANFNGNAFAAEALAQGASLSIIDDAAYFTGPKT----ILVDNV 73

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L  LA   R + K  ++A+TGS GKTTTKE+++  LS   +T A  G+ NNHIGVPL
Sbjct: 74  LETLQALARYHRKQLKIPVLALTGSNGKTTTKELISAVLSKKYRTTATHGNLNNHIGVPL 133

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           TL  M    + GI E+G +H  EI FL  L  P    IT    AHL  F G+E +   K+
Sbjct: 134 TLLSMTPKTEIGIVEMGANHQKEIAFLCSLAAPDYGYITNFGKAHLEGFGGMEGVVMGKS 193

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E++  L               +  K    A                          + + 
Sbjct: 194 ELYTFLHTHQKTAFINPKDALQKEKTTDIA----------------HVYFPESITFKSAA 237

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             V++  + +E+  + +G +   N+   + I             A+S + P   R +   
Sbjct: 238 PFVKVAFEDLEIQSNLVGDYNYANIAAAIAIGLYFKIPKQEIKTAISEYVPSNNRSQIIH 297

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A NQ    L+ ++YNANP+SMKAA+S  + +    +     +LGDM E+G  +   H +
Sbjct: 298 TANNQ----LLLDAYNANPSSMKAAVSNFANLKAAFK---TVILGDMFELGTTAAEEHQE 350

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVK 450
           + +        + +  G          P+       +T + L   + +  L     +++K
Sbjct: 351 MVDFTDACCFENTYYVGALFSGTTTKNPQ------FKTFEALEKHLHAQPLRKNS-ILIK 403

Query: 451 SSNSCGFYRLINLL 464
            S      RL+N+L
Sbjct: 404 GSRGMRLERLLNVL 417


>gi|325205486|gb|ADZ00939.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M04-240196]
          Length = 452

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+I     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALINNALRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----VDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|302346993|ref|YP_003815291.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
 gi|302151125|gb|ADK97386.1| alanine racemase [Prevotella melaninogenica ATCC 25845]
          Length = 826

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 194/471 (41%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   +   I     G      ++ +  DSRS+    +  FFA+K    DG ++I 
Sbjct: 1   MN--YTIEKVTTLIGARRYG-DKDANISFVLTDSRSLCFPEETLFFALKTERNDGQNYIP 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV       +          V   L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYARGVRNFVVEVVPEDWATRYPDSNFLKVVGSLEALQRLAERHRDEYLIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVLLLNENTQVGVFEAGISQPGEMMA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V TT+  AH  NF  +E     K ++F     T  I  + D+       +
Sbjct: 178 LRDIIQPTIGVFTTLGTAHQENFPSLEAKCHEKIKLFH---DTEAIVYSADNEVMAQCLS 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +    G K  +S   ++ A +     K+  E +   V       +     I     +N +
Sbjct: 235 QYDYKGQKLDWSVKNTEAAFYIKAIEKKDIETTVSYVWKGQTEGQYKLPFIDDASVENSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L     T  + ++   P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TCAVVSLHLGLTPATISERMAQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   RR  +L D+ + G+  +  +  +A +     +      G  +LA + A
Sbjct: 352 DFMNRRPDHKGRRRTLILSDILQSGDTDKDLYNKVAFLCEKRGVEKFIGIGEGLLAQRSA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  H+  T++      + ++L   +V+++K +   GF RL  LL+++
Sbjct: 412 FKHLGEKHFFATVNSFIHSDVFANLH-DEVILLKGARQFGFDRLTELLVKK 461


>gi|293603440|ref|ZP_06685865.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
 gi|292818142|gb|EFF77198.1| UDP-N-acetylmuramoylalanyl--D-glutamate-2,6-diaminopimelate ligase
           [Achromobacter piechaudii ATCC 43553]
          Length = 952

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/440 (25%), Positives = 191/440 (43%), Gaps = 21/440 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+G+S D+R I P E F A+ G ++D H+++  A  +GA        +  ++    +P  
Sbjct: 513 VSGVSTDTRRIGPGELFVALVGENFDAHNYLDQAEGRGACA----AVVAHAVSDSKLPQL 568

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143
            + D   AL ++  A R +    ++A+TGS GKTTTKEM++             A  G+ 
Sbjct: 569 VLGDTRIALMRIGAAWRAQFTLPVVAVTGSNGKTTTKEMISAMLAEWQGESGRLATAGNL 628

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL R+  +    +FELGM+H GEI  L  +  P + ++T     H      +
Sbjct: 629 NNDIGVPLTLLRLRAEHRAAVFELGMNHPGEIAQLAAMAAPTVTLVTNAQREHQEFMHTV 688

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A         L   G      D+ +  +  A       + +  FG     D    + 
Sbjct: 689 EAVAHENGAAIAALPDDGVAVYPGDEPYCAIWDA---LAEPRRVLRFGLQPGLDVYAEQI 745

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               + +   V       ++     G H  +N L  +         +D A++ALS F P 
Sbjct: 746 LADVDSTRCRVVTPVGVADLALPVPGLHNLRNALAAIASAIASGVPLDCAVRALSRFAPV 805

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR +  + +       LID++YNANP S++ AI VL++I+    G R+ VLGDM E+G+
Sbjct: 806 AGRMQHKKMSDG---TLLIDDTYNANPDSVRVAIDVLARIA----GTRVLVLGDMGEIGD 858

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H ++        +  +        +   A       H   ++D +   ++  L  
Sbjct: 859 NGPALHAEVGNYAREQGLDALITL--GEASRAAAAAYGAGAHACASVDEVVAALRG-LRP 915

Query: 444 GDVVVVKSSNSCGFYRLINL 463
              V++K S      R++  
Sbjct: 916 SS-VLIKGSRFMRMERVVTA 934



 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 88/487 (18%), Positives = 159/487 (32%), Gaps = 48/487 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            P+ T  + +  +               + +DSR I P + F A  G   DG  +I  A+
Sbjct: 9   TPVATVAETVAWLHARVSLTA------HLKLDSRDIEPGDVFVACPGLSSDGRLYIDKAL 62

Query: 62  QKGAGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
             GA  V+       ++   + S P+  V  +   L +LA     R      ++A+TG+ 
Sbjct: 63  ALGASAVLFEAPGSDALQAAAGSTPMLPVTGLRALLGELADTWYGRPSAALAVVAVTGTN 122

Query: 118 GKTTTKEMLTIALSSIKKTY----------ACIGSYNNHIGVP-----LTLARMPVDVDF 162
           GKT++ + +  ALS   K                +    +  P             D   
Sbjct: 123 GKTSSVQWIAHALSRNDKPCGTIGTLGAVLPDGRTLGGDLTTPDVLTVHRTLAAMRDAGA 182

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               +  S +G  +     VR  +A  T +   HL     +E    A             
Sbjct: 183 QAVAMEASSIGIEQGRLDGVRVALAAFTNLTRDHLDYHGTME-RYEAAKARLFNWPGLTA 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKS 280
             +N DD     L A          YS   S +     + R  +  S+     +      
Sbjct: 242 AVVNADDEAGRRLLATLPTGMAAMGYSLSDSPDIPAAMRARDLQATSQGQIFTLVSPHGE 301

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++V   +G H   N+L+  G++  L        + L+   P +GR +           +
Sbjct: 302 AQIVTRLLGAHNVSNLLLVAGVLYKLGLPFAQIARELAATDPVDGRLQTVEPVTTSTQSS 361

Query: 341 -----LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                L+   Y   P ++  A++ L  ++    GR I + G     GE       ++  +
Sbjct: 362 AGRGALVVVDYAHTPDALSRALTALRAVAVARSGRLICLFG---CGGERDPGKRPEMGRI 418

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +     HV +S  +            +   +P + +V          +    S    DV
Sbjct: 419 AAQL-ADHVVVSSDNPRTESPQDIIDQILAGIPPAANVDVQVDRARAIMQTIWSASPDDV 477

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 478 VLLAGKG 484


>gi|118497121|ref|YP_898171.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323418|ref|ZP_03057195.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|118423027|gb|ABK89417.1| d-alanyl-d-alanine-adding enzyme [Francisella novicida U112]
 gi|194322273|gb|EDX19754.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. novicida FTE]
          Length = 452

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S    +++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSFAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    +        TL+D++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
            +     +G+R+  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A  
Sbjct: 344 DEF----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L +       + VK + S     ++  + E
Sbjct: 400 PAQNAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKE 450


>gi|149186206|ref|ZP_01864520.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
 gi|148830237|gb|EDL48674.1| UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase
           [Erythrobacter sp. SD-21]
          Length = 493

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 172/477 (36%), Positives = 235/477 (49%), Gaps = 31/477 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           LW    + +A+ G          V G+ +DSR +   + F A+KG   DGH F+  A   
Sbjct: 26  LWHSKAIAEAVGGT---ASSDFQVAGVEMDSRDVVHGDLFVALKGEAMDGHRFLDKAFAN 82

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +V+         +  P   V+D   AL  LA AAR R++A II +TGSVGKT  K
Sbjct: 83  GAAAAIVDRP-------VDYPHILVEDTTEALKALARAARNRTEAKIIGVTGSVGKTGVK 135

Query: 124 EMLTIALSSIKK--TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           E +  +L    +   +    SYNNH+GVPL+LARMP    FGIFE+GM++ GEI  LT  
Sbjct: 136 EAIFASLERASRGAAHRSTRSYNNHVGVPLSLARMPARNRFGIFEMGMNNAGEIEGLTTQ 195

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRPH+AVITTIAPAH+ N   +E IA AKAEIF GLE  G   +  D   FE L+  +  
Sbjct: 196 VRPHVAVITTIAPAHIENLGSMEAIADAKAEIFAGLEPGGVAVIPADSEHFERLRLAALR 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------EVVHHGIGYHMAQN 295
           +      SFG++ NAD +L      +    +     G                G H   N
Sbjct: 256 MSASV-VSFGRAANADVRLLDAIPSANGGSLVTCEFGNPAKGGGRLCYTVAEPGDHWVIN 314

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  +  V     D+  A  AL+     +GRG R+      G   LIDESYNANPASM  
Sbjct: 315 SLAVMATVRAAGGDMAAAGLALAEMGGLKGRGARHGIDAPGGKALLIDESYNANPASM-- 372

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             + L+Q+      RRIAVLG M E+G+ +  FH  L+E L   ++ +  L G  + AL 
Sbjct: 373 -RATLAQLGQTPSSRRIAVLGSMKELGDFAAKFHAGLSEPLIAADVDYALLVGDEMRALA 431

Query: 416 DALPRSI--------HVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
             L +             +  + +     +Q   +V GD V+VK SNS G  +L++ 
Sbjct: 432 RELGKPAFNSLGNPLEWEHCNSAEEAIGLLQEFGIVAGDAVLVKGSNSVGLGKLVDH 488


>gi|38234177|ref|NP_939944.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38200439|emb|CAE50127.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Corynebacterium diphtheriae]
          Length = 496

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 124/498 (24%), Positives = 195/498 (39%), Gaps = 39/498 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + + + G    G  P+  V G +  DSR ++    F A+ G   DGHDF+ 
Sbjct: 1   MIDL-TVEQIARIVGGTLTQGTDPETVVTGPVEFDSRKVSEGSLFVALAGARVDGHDFVP 59

Query: 59  HA---------------VQKG-AGLVVVNTDMVASIGSLSIPVFGVDD-----VLGALNK 97
            A               +  G A  +VV         + S      +D     VL  +  
Sbjct: 60  AALESGAAAALVAHPVKIDSGLAPAIVVPPATGQQQSANSYATEHDEDGSVAAVLQGMGL 119

Query: 98  LAVAARLRS---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +A            T++ +TGS GKT+TK+ML   LS+   T A  GS+NN IG P T  
Sbjct: 120 IARRVIDTLTAQGLTVMGVTGSAGKTSTKDMLASILSNQAPTVAPPGSFNNEIGHPYTAL 179

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R      + + E+    +G I  L  +  P I V+  +  AHL  F   E IA AK E+ 
Sbjct: 180 RCTEQTRYLVAEMSARGIGHIAHLAQIAPPKIGVVLNVGTAHLGEFGSREVIAQAKGELV 239

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L   G   LN DD     ++ ++ A  I    +F  +           +  + +    
Sbjct: 240 EALPHDGVAVLNADDDLVAGMRTRTDAKVI----TFSANSQDADVYATDIELDDYARARF 295

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L     E V         Q         +   A +     A ++ +       R     
Sbjct: 296 TLHIGEAENVVTLRVAGQHQVSNALAATAAAYAAGIAIDDIAEALSNHLGASAHRMALMH 355

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMCEMGELSQSFH 389
                T+ID++YNAN  SM+A ++ LS  + +           AVLG M E+GE S + H
Sbjct: 356 RSDGATIIDDAYNANTESMRAGLTALSTTAHNKSHKGEASHAWAVLGPMSELGEESVAAH 415

Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
            ++  +L   N+  + + G     LAL D   R ++    +         +  ++   DV
Sbjct: 416 EEIGRLLGELNVHGLIVVGDSADSLALADGARRSNVTTLMARDTAEAADLLDQNMGSADV 475

Query: 447 VVVKSSNSCGFYRLINLL 464
            +VK+SN+   +    +L
Sbjct: 476 ALVKASNAYRLWETAEIL 493


>gi|218961099|ref|YP_001740874.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729756|emb|CAO80668.1| putative bifunctional MurE/MurF enzyme [Includes:
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase (UDP-MurNAc-tripeptide
           synthetase);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (UDP-MurNAc-pentapeptide synthetase)] (partial
           match, murE/murF-like) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 956

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 189/437 (43%), Gaps = 23/437 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +SIDSRSI P   F AIKG  YDGH ++   ++      +       +  S     + V+
Sbjct: 539 LSIDSRSIKPGSVFIAIKGEKYDGHSYLGDVLKIKENCAIGEIPYPLNQFSEENSYYQVE 598

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L  +  +         A  IA+TGS GKTT KE++   L S       + + NN IG+
Sbjct: 599 NCLETMGLICRKYLQLFPAKRIALTGSTGKTTCKELMAQVLQSSAPVLKTLANENNIIGL 658

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
             T+ R+  +  + IFELG +H GEI  L  +  P I +I  I P+HL  F   E +   
Sbjct: 659 CKTIIRIKPEQQYAIFELGTNHFGEIAALADVANPDIGIILNIGPSHLEYFGDEEGVFRE 718

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +F+            DD  F+ L  +          S G ++N+D+++ + K   + 
Sbjct: 719 KITLFKRPL--ALRLYPGDDFRFDYLANE--------GISIGYNENSDYRITRHKCNKDN 768

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +                H A N    + +   L  D +    AL+     E R   
Sbjct: 769 QSFYLNEDLWF----LPYGAPHYAINSAFAIVLGLKLGIDKEKMQTALNKPIQLELRN-- 822

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +G   LI + YNANP SM+ A+    +++P       A+LGDM E+GE S  +H
Sbjct: 823 --QVEKRGTGLLILDCYNANPYSMQKALEYWQELNPEQP--HYAILGDMLELGESSILYH 878

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLVDGDVVV 448
             ++ +L+      ++  G +         +   + +  T++ L    + +SL +  +++
Sbjct: 879 QMISAMLAEMRYEKLYTVGNYSRIYHP--EKESPIFHYNTVEELIADRKLNSLPENAIIL 936

Query: 449 VKSSNSCGFYRLINLLL 465
           VK S++    R+I +L 
Sbjct: 937 VKGSHAIQLERVIPILK 953



 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 95/452 (21%), Positives = 160/452 (35%), Gaps = 48/452 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I P + F  I+G ++DGH+FI  A++KGA ++V        I    IP   V 
Sbjct: 38  VQTDNRKIKPGDIFVCIQGANFDGHNFINSALEKGAAIIVC-----REINKRDIPYIKVK 92

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNH 146
           D   A   +A       +   T+I ITG+ GKTTT  +L  AL ++  +           
Sbjct: 93  DTRKAAAVIARTVMLPQKIPYTLIGITGTNGKTTTSLLLYEALRNLGFRCGWIGTLGYYI 152

Query: 147 IGVPLTLARMPVD---------------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            G      R   D               VD+ + E+  S         + V+    + + 
Sbjct: 153 EGKAFPSERTTPDIIELNEIFGQMIEAKVDYVVMEV--SSHSLSLDRIYGVKFDYCLFSN 210

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E    AK   FE   K G+I +      F +            +YS G
Sbjct: 211 LGRDHLDFHQTLENYGKAKMSFFEQGAKDGSISVINTADAFGVQIKDMLKEKQAKVYSLG 270

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              +A+FQ    K     S  ++  +   + V    IG    QN+ +T+  +  L    +
Sbjct: 271 -GNDAEFQYSDIKTDINTSSFKLIAENCEIPVTSRLIGSFNIQNLGLTVLTLYALGFSPE 329

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               +L    P +GR +R     N G F      Y   P ++   +  +  +        
Sbjct: 330 AIHNSLKDIPPVQGRLERVENNFNIGIFID----YAHTPEAIDNVLKAVEDLPHKR---I 382

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVH 425
           + ++G     G         L    +L +   V +S  +  +      +KD +  S    
Sbjct: 383 LCLIGA----GGDRDKGKRPLMLKSALNHSDVVIISDDNPRSENPERIIKDIVSSSDIFL 438

Query: 426 ---YSETMDGLFLFIQSSLVDGDVVVV--KSS 452
                         I     + D+V++  K S
Sbjct: 439 PWWIIRNRQQAISSIIRLAQEEDIVLICGKGS 470


>gi|308235558|ref|ZP_07666295.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 576

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 139/545 (25%), Positives = 213/545 (39%), Gaps = 83/545 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI------------------VPQGFVNG------ISIDSRS 36
           M P+ +  ++  A+ G                            ++        + DSR 
Sbjct: 17  MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 75

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGAL 95
           +     F AI G   DGHDF+  A + GA + +V     +    +  I    V++ + AL
Sbjct: 76  VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 135

Query: 96  NKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             LA     R     +  +II ITGSVGKTTTK+ML   LS++  T A IGS+NN IG+P
Sbjct: 136 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 195

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E IA AK
Sbjct: 196 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 255

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-------KSHALGIKTIYSFGKSKNADFQLRKW 263
           +EI  GL   G   LN DD     +++       +       T   F  S N ++QL   
Sbjct: 256 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQLSAS 315

Query: 264 KQCSEQSWMEVQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               ++      +  +  E              G H   N +    +      ++D+  K
Sbjct: 316 DISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDSIAK 375

Query: 316 ALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------- 363
            L           +  + + N   FTLID+S+NANP SMKA I  L              
Sbjct: 376 VLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDLNVN 435

Query: 364 ------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------F 409
                 S      RIAVLG M E+G    + H  + E ++ +NI  +   G         
Sbjct: 436 TEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKKLDE 495

Query: 410 HVLALKDALPRSIH---------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFY 458
               +      +           V++          + +        VV++K S++ G  
Sbjct: 496 LAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHASGLS 555

Query: 459 RLINL 463
            L   
Sbjct: 556 VLAER 560


>gi|154489837|ref|ZP_02030098.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218258261|ref|ZP_03474663.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
 gi|154089279|gb|EDN88323.1| hypothetical protein PARMER_00066 [Parabacteroides merdae ATCC
           43184]
 gi|218225604|gb|EEC98254.1| hypothetical protein PRABACTJOHN_00318 [Parabacteroides johnsonii
           DSM 18315]
          Length = 821

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 102/467 (21%), Positives = 179/467 (38%), Gaps = 16/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           ++  ++   I   +   +    V+ +  DSR ++   Q  FFA++    DGH++I    +
Sbjct: 3   YSIKEIAGIIGADA-QKLYDAPVSILLTDSRRLSFPEQSLFFALQTKTNDGHNYIQGLYK 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                 VV+T +             V D L AL KLA   R R    +I ITGS GKT  
Sbjct: 62  LRVRNFVVSTFLPEFESMPEANFLVVKDTLKALQKLAAHHRKRFNIPVIGITGSNGKTIV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ +GVPL++ +M      GIFE G+S   E+  L  ++
Sbjct: 122 KEFLYQLLHNEFNIVRSPRSYNSQLGVPLSVWQMSDKNTLGIFEAGISQPDEMERLQPII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I VIT I  AH  NF  I        ++    +    I+   D      +++   + 
Sbjct: 182 APTIGVITNIGEAHQENF--ISSTQKCLEKLTLFNDCEAIIYDGDDAFIANCIESACLSH 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T         A   +   K+   ++ +   L G               +N +  + +
Sbjct: 240 KAITWSR--TDSEAPLYIESIKKLDSETIIRCTLLGFDRTYTIPFTDDASIENAIHCMAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L       I+      P   R    +   N     LI+++YN++  S+  A+     
Sbjct: 298 MLYLKPTSVNDIEKFKRLEPVAMRLDVKQGINN---CLLINDTYNSDINSLDIALDFQQS 354

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                  +   +L D+ + G L +S +  +A+++    I  +   G  +     A    I
Sbjct: 355 RRVEKNLKCTLILSDILQSGTLPKSLYKKVADLVRRKKIDRIIGIGRDLKEYGGAF--DI 412

Query: 423 HVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +  T D        +      +++++K S    F R+  LL ++
Sbjct: 413 EKEFYLTTDEFIKSPSFKKF--KDELILIKGSRQFHFERISELLEKK 457


>gi|168029598|ref|XP_001767312.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681376|gb|EDQ67803.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 194/492 (39%), Gaps = 45/492 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G  +     G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               VV N                V+ D L AL  LA   R R    ++ +TGSVGKTT 
Sbjct: 173 QCAGVVANWVPHGWSRG----FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228

Query: 123 KEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + M T          +   G++NN IGV LTL R+       + ELGM+H GEI  L + 
Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD     L     
Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVP 344

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----------------KSMEVV 284
                 +  FG+ + +D +L   K  +    + V L+                       
Sbjct: 345 LPAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG------- 337
                    +     L +     A    A                ++    +        
Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGP 464

Query: 338 ----FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  +I++ YNANP S++A++ +L  +  +    RIA+LGDM E+GE+S S H  + 
Sbjct: 465 ASHVQILVINDCYNANPMSVEASLQLLQSVKSNR---RIALLGDMFELGEISLSSHKGIL 521

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++   + +  V + G       +   +   +        L   +   +  GD V+VK S 
Sbjct: 522 QLCVDFKLDLVIVVGTCFSEAAEYF-KGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSR 580

Query: 454 SCGFYRLINLLL 465
                 L+  + 
Sbjct: 581 GMRMEVLVEAIK 592


>gi|298243532|ref|ZP_06967339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556586|gb|EFH90450.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 478

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 132/487 (27%), Positives = 199/487 (40%), Gaps = 33/487 (6%)

Query: 4   LWTFHDLLQA-----IQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           ++T  D+LQ       Q   +      P         DSR + P + F AIKG   DGH 
Sbjct: 1   MFTLADILQQSQDAQAQVQLVSTTTPDPVMTFTEAHHDSRQVKPGDLFIAIKGAKVDGHA 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-RLRSKATIIAIT 114
           FI  A Q GA   +    +             V DV+ AL+  A A  R + + T I IT
Sbjct: 61  FIHKAAQAGASAALCTHPV--EDVPEGFLQIVVPDVVAALHATARARTRRQPETTYIGIT 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT+TKE +   L     T   + SYN  IG PLTL R+     + + E+G   +GE
Sbjct: 119 GSNGKTSTKEAIAAVLERHAPTLKTLASYNTEIGYPLTLLRLEPQHRYAVLEMGAQWVGE 178

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++ L+ +  P  +VIT +  +HL  F   E++  AK+E+ + L   G   LNYDD     
Sbjct: 179 LKMLSGITCPDWSVITNVGASHLGYFGSQEQVVIAKSELVQVLSPDGIALLNYDDPNVRA 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  K+ A  I      G    A                 +  Q + + V  H  G H   
Sbjct: 239 MNTKTSARVIYYGQGEGADVRASKPGGDQLF---GRSFVLSYQDQEVPVQLHIPGEHGIA 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
             L    +       +D   +AL    P + R             TLID+SYNAN  S+ 
Sbjct: 296 IALAAAAVGCAAGLPLDVIRQALEDLKPAKRR---GEIKPGPNGSTLIDDSYNANRQSIL 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
           A    +   +    G+R AVLGD+ E+G+ ++  H      L+   + ++   G      
Sbjct: 353 AIAQAMHGSTLAPHGKRWAVLGDILELGQYAREEHRTCGAALASL-VDYIVAIGEQARFF 411

Query: 413 ---ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              A++  LP+     YS  ++               ++  +   D+V++K+S   G   
Sbjct: 412 IEGAIEAGLPQDHAYFYSADLENSAEVEASKRAAADLLKEQVRGDDLVLIKASLGLGMDT 471

Query: 460 LINLLLE 466
           LI  L E
Sbjct: 472 LIKQLSE 478


>gi|325138950|gb|EGC61500.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis ES14902]
          Length = 452

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 133/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  A++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCAAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|145223571|ref|YP_001134249.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|145216057|gb|ABP45461.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium gilvum PYR-GCK]
          Length = 504

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 121/500 (24%), Positives = 199/500 (39%), Gaps = 36/500 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  + +   + + + G    +         V G +  DSR++     F A+ G   DGHD
Sbjct: 1   MIEM-SLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLA-------------- 99
           F   AV  GA  V+    +      +             G L   A              
Sbjct: 60  FAATAVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARL 119

Query: 100 ----VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                A  +    TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R
Sbjct: 120 AAAVAAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLR 179

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ + E+   H G I  L  +  P I  +  +  AHL  F   E IA+ K+E+ +
Sbjct: 180 ATESTDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQ 239

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + ++G + LN DD     +  K+ A  ++   S                   +    + 
Sbjct: 240 AVPQSGVVILNADDPVVAAMADKTAARVVRVGRSADARTLDVRADGVTLDPLARPAFTLH 299

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G+ + V     G H   N L+   +     A +     AL+   P      R + +  
Sbjct: 300 AGGEQVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPV--SRHRMQVSTR 357

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLA 393
               T+I+++YNANP SM A +  L+ +S       R  AVLG+M E+GE + + H  + 
Sbjct: 358 SDGVTVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIG 417

Query: 394 EVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +    ++S + +   G  + A+                    D     ++  L  GDVV
Sbjct: 418 RLAVRLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVV 477

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK+SNS G   L + L+ E
Sbjct: 478 LVKASNSAGLGALADALVSE 497


>gi|76880174|dbj|BAE45859.1| MurF synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 120/492 (24%), Positives = 194/492 (39%), Gaps = 45/492 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +W  H +  A+ G  +     G    I  D+R++   + F A+ G ++DGH F+  A +K
Sbjct: 116 MWDAHAIAHAVHGKVLAEGGAG---SICTDTRTMRAGQWFLALTGHNFDGHSFLYQACEK 172

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
               VV N                V+ D L AL  LA   R R    ++ +TGSVGKTT 
Sbjct: 173 QCAGVVANWVPHGWSRG----FVQVEGDTLDALQALASDVRARFWGPVVGLTGSVGKTTA 228

Query: 123 KEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           + M T          +   G++NN IGV LTL R+       + ELGM+H GEI  L + 
Sbjct: 229 RAMTTLALQGLNGHVHQAPGNFNNDIGVALTLLRLNSRSVACVLELGMNHAGEILELANT 288

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +P + V+  + PAH+ NF  G+EE+A+AK EIF          +N DD     L     
Sbjct: 289 AKPDVRVLLNVGPAHMENFPGGLEEVAAAKGEIFRNARPGDLCIVNADDP----LAMAVP 344

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----------------SMEVV 284
                 +  FG+ + +D +L   K  +    + V L+                       
Sbjct: 345 LPAGVRVVRFGRKEGSDMRLVAAKTINRGFGISVILEHVARYARYANSLVSDDPVRNPNE 404

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF------ 338
                    +     L +     A    A                ++    +        
Sbjct: 405 TVTRTRVEFEIPSPGLHLAINACAAAAVATNLGVPLESVARSLSMFQPIDMRCQVEAVGP 464

Query: 339 -----FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  +I++ YNANP S++A++ +L  +  +    RIA+LGDM E+GE+S S H  + 
Sbjct: 465 ASHVQILVINDCYNANPMSVEASLQLLQSVKSNR---RIALLGDMFELGEISLSSHKGIL 521

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           ++   + +  V + G       +   +   +        L   +   +  GD V+VK S 
Sbjct: 522 QLCVDFKLDLVIVVGTCFSEAAEFF-KGRDIIAFRNTSSLTNHLARFISPGDSVLVKGSR 580

Query: 454 SCGFYRLINLLL 465
                 L+  + 
Sbjct: 581 GMRMEVLVEAIK 592


>gi|311114354|ref|YP_003985575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310945848|gb|ADP38552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 577

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 139/545 (25%), Positives = 213/545 (39%), Gaps = 83/545 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI------------------VPQGFVNG------ISIDSRS 36
           M P+ +  ++  A+ G                            ++        + DSR 
Sbjct: 18  MMPM-SVKEVAAAVNGRLFIGGCLVKENHSVTSEKFCITDNDVVISDNDVVIYATSDSRK 76

Query: 37  IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGAL 95
           +     F AI G   DGHDF+  A + GA + +V     +    +  I    V++ + AL
Sbjct: 77  VVDSSIFVAIPGDRVDGHDFVQKAAELGAKIAIVEHFVKLDESNNSKIAQIVVENSVEAL 136

Query: 96  NKLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
             LA     R     +  +II ITGSVGKTTTK+ML   LS++  T A IGS+NN IG+P
Sbjct: 137 GLLAKHNLERRRALNTPFSIIGITGSVGKTTTKDMLKALLSTLGNTVAPIGSFNNEIGLP 196

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LT  ++  +  F I E+G +H+GEI  LT +  P +AV+  +  AHL  F  +E IA AK
Sbjct: 197 LTSLQVNENTRFLIAEMGANHVGEIAKLTTIAPPDLAVVLKVGVAHLGEFGSVERIAQAK 256

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-------KSHALGIKTIYSFGKSKNADFQLRKW 263
           +EI  GL   G   LN DD     +++       +       T   F  S N ++QL   
Sbjct: 257 SEIVRGLVAHGIAILNADDFRVSAMRSLADQDKLRWFGKNSNTEGDFDASNNGNYQLSAS 316

Query: 264 KQCSEQSWMEVQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               ++      +  +  E              G H   N +    +      ++D+  K
Sbjct: 317 DISLDEMGCAEFVLNEKNEDKSKNSVRVHLAIQGQHNVMNAMAASNVARYFGMNLDSIAK 376

Query: 316 ALSVFHPKEGRGKR-YRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------- 363
            L           +  + + N   FTLID+S+NANP SMKA I  L              
Sbjct: 377 VLHEVSHISPHRMQLSKISNNNNVFTLIDDSFNANPDSMKAGIDGLCSYENHDLHDLNVN 436

Query: 364 ------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------F 409
                 S      RIAVLG M E+G    + H  + E ++ +NI  +   G         
Sbjct: 437 TEEDLTSKKNNIFRIAVLGSMLELGSNENNMHESIGEYVAKHNIDALIAVGSKFDKKLDE 496

Query: 410 HVLALKDALPRSIH---------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFY 458
               +      +           V++          + +        VV++K S++ G  
Sbjct: 497 LAGCIYKGAKDNWQNKSLDVENGVYFVHDCTEADNVVWNLVAAHSSSVVLLKGSHASGLS 556

Query: 459 RLINL 463
            L   
Sbjct: 557 VLAER 561


>gi|55540740|gb|AAV52896.1| MurF [Flavobacterium columnare]
          Length = 415

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 118/423 (27%), Positives = 199/423 (47%), Gaps = 23/423 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  D+R I+P   F A+KG +Y+ ++F   A+ KGA  V+++     +  +    +  V+
Sbjct: 16  VCTDTRKISPNSLFIALKGDNYNANEFAQEALNKGALFVIIDDKKYYTDEN---KMLLVN 72

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + L AL +LA   R +    IIA+TGS GKTTTKE++ + LS   KT A IG+ NNHIGV
Sbjct: 73  NSLQALQELANYHRNQLGLPIIALTGSNGKTTTKELINVVLSKKYKTIATIGNLNNHIGV 132

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL  +  D D  I E+G +H  EI  L  +  P    IT    AHL  F GIE +   
Sbjct: 133 PLTLLSIKEDTDIAIVEMGANHQKEIESLCSITEPDFGYITNFGKAHLEGFGGIEGVIKG 192

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E++  L+          D   +  K +                  + +         +
Sbjct: 193 KSEMYTYLKTHNKTAFVNLDDSIQEEKTQHINR--------YTFSTDNNKKANIIINKIE 244

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   V+++   +E+  + IG + + N+ + + I +          +A+  + P   R + 
Sbjct: 245 ANPFVKIKYNGIEIQSNLIGIYNSNNINVAISIGTYFNVSEQDIKQAIENYIPANNRSQL 304

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                N+    +I ++YNANP+SM AAIS   Q+    +G +IA LGDM E+GE S + H
Sbjct: 305 IEKGNNK----IILDAYNANPSSMAAAISNFQQL----DGSKIAFLGDMFELGEESLTEH 356

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + E +  +   + +  G +      +     H+HY  + +       + + +   +++
Sbjct: 357 KKIIESILNHTSINFYFIGKN---FYSSKIEKEHIHYYTSFEDFVENKPNGINNN-TILI 412

Query: 450 KSS 452
           K S
Sbjct: 413 KGS 415


>gi|308388618|gb|ADO30938.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130842|gb|EGC53575.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis OX99.30304]
          Length = 452

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 132/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+I     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALINNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|281423583|ref|ZP_06254496.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
 gi|281402403|gb|EFB33234.1| Mur ligase domain protein/alanine racemase [Prevotella oris F0302]
          Length = 857

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 107/471 (22%), Positives = 185/471 (39%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      +  +  DSRS+    +  FFA+K    DGH +I 
Sbjct: 33  MT--YTIEKVTTLIGARRFGAS-DAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIP 89

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV       +          V + L AL +LA   R      I+ ITGS 
Sbjct: 90  ELYRRGVRNFVVTEVPADYATEYAEANFLKVVNSLEALQRLAERHRDEFNIPIVGITGSN 149

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   L           SYN+ +GVPL++  +      GIFE G+S  GE+  
Sbjct: 150 GKTMVKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLA 209

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF   E     K  +F       T+  N DD        
Sbjct: 210 LRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVN 266

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +      + ++   K K A F ++  ++    + +    +G         I      N  
Sbjct: 267 ELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSF 326

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   VD   + +    P      R      Q   TLI++SYN++  S+  A+
Sbjct: 327 ACAAVALTLGVGVDVLDERMQQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 383

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + G  +   + ++  +     +      G  + +    
Sbjct: 384 DFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQSHAHC 443

Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      ++ E+++ L    +   L   +V+++K +   GF +L  LL+++
Sbjct: 444 IGVKAK-YFFESVEELIDSDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 492


>gi|319411055|emb|CBY91455.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alan ine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis WUE 2594]
          Length = 452

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|160891162|ref|ZP_02072165.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|317481059|ref|ZP_07940138.1| alanine racemase [Bacteroides sp. 4_1_36]
 gi|156859383|gb|EDO52814.1| hypothetical protein BACUNI_03609 [Bacteroides uniformis ATCC 8492]
 gi|316902772|gb|EFV24647.1| alanine racemase [Bacteroides sp. 4_1_36]
          Length = 841

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 115/489 (23%), Positives = 206/489 (42%), Gaps = 34/489 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  ++   + ++I    +G VP   ++ +  DSRS+    +  FFA+     DG  +I 
Sbjct: 1   MS--YSIESITESIGARRVGNVP-ATIDWLLTDSRSLNFPEETLFFALTTKRNDGARYIA 57

Query: 59  HAVQKGAGLVVVNTDMVASIG------------------SLSIPVFGVDDVLGALNKLAV 100
               +G    V++ +    I                   S ++    V + L AL KLA 
Sbjct: 58  DLYARGVRNFVLSEESFRLIEHGELKIDNDAQQPAIHFQSSTVNYLIVSNPLKALQKLAE 117

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R +  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M    
Sbjct: 118 QHRNRFQIPVIGITGSNGKTVVKEWLHQLLSPERAIIRSPRSYNSQIGVPLSVWQMNEQS 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  IFE G+S  GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +  
Sbjct: 178 ELAIFEAGISEPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLMLFKNCD-- 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +  N DD F     AKS     +  +S  K       + K ++  + + +  +     
Sbjct: 236 -VVIYNGDDEFVSNCVAKSMLSAREIAWSR-KDMERPLYISKVEKQDDCTVISYRYLDMD 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  I     +N L  L     L    +   + ++   P      R      +    
Sbjct: 294 NTFTLPFIDDASIENSLNCLAACLYLMLPAERITERMAKLEPI---AMRLEVKEGKNNCL 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LI++SYN++  S+  A+  L + S     RR  +L D+ E G+ + + +  +A++++   
Sbjct: 351 LINDSYNSDLGSLDIALDFLYRRSQSKGLRRTLILSDILETGQNTPTLYRQVAQLVNSRG 410

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFY 458
           I  +   G  + +       +I   +      L   IQ   L  + +++++K +   GF 
Sbjct: 411 IERIIGVGNEISSCAARF--NIEKTFYPDTAALIRTIQRGELRLENEIILIKGARKFGFD 468

Query: 459 RLINLLLEE 467
            L  +L ++
Sbjct: 469 SLTEVLEKK 477


>gi|24214164|ref|NP_711645.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24195061|gb|AAN48663.1| UDP-N-acetylmuramyl pentapeptide synthase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 466

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 123/443 (27%), Positives = 201/443 (45%), Gaps = 31/443 (6%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVL 92
                  F  + G   DGH+FI  A+ KGA   +V  +                 V + L
Sbjct: 39  EAEENSLFVPLLGNR-DGHEFIRDAISKGATYFLVEENHPIYKNLNLEEKSKAIPVKNTL 97

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--YACIGSYNNHIGVP 150
            AL KLA   R R    +IA+TGS GKTTTKE+L   L +++++       +YNN IG+P
Sbjct: 98  TALGKLASFHRSRFDPIVIAVTGSSGKTTTKELLGNCLKNLEESALVVTEKNYNNEIGLP 157

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            TL ++       + ELGM+H GEI  L+ + +P  A+ITTI  AH+      + IA AK
Sbjct: 158 FTLFKISDQTRVVVCELGMNHKGEISRLSQIAKPDYAIITTIGTAHIEFLESQKNIAKAK 217

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI EGL+K G +F      + ++LK K+   G K + +      +  Q +      E  
Sbjct: 218 GEIVEGLKKGGKLFYPNTGEYSKILKNKTRKHGNKLVLTKSDKIFSILQKKSSGFLLE-- 275

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                   K+ ++  +  G  + +N+ + +  +  +    +   + +  F          
Sbjct: 276 -------YKNKKIQWNLPGEKLLENLSVAITCLEAIGTPQEWIQEGIHSFKSSNK----- 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  L  G +++I+++YNAN  SM +++ V  Q++        AVLGDM E+GE S+ FH 
Sbjct: 324 RLDLQNGKYSVINDTYNANYESMISSLEVADQLA--DGKEFYAVLGDMKELGEYSKEFHK 381

Query: 391 DLAEVLSL-YNISHVWLSGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLV-- 442
            L +  S   N+  ++  G     +++   +         H+  T +GL   I   L   
Sbjct: 382 KLGKKCSEFQNLKGLYTFGTDSFWIQEEFVKRTSSPRFSEHFPGTQEGLSELIHKFLQTI 441

Query: 443 -DGDVVVVKSSNSCGFYRLINLL 464
            +G +V+ K+S      R +  L
Sbjct: 442 PEGSIVLAKASRGIQLERFVEAL 464


>gi|121595965|ref|YP_987861.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
 gi|120608045|gb|ABM43785.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax sp. JS42]
          Length = 482

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 120/471 (25%), Positives = 191/471 (40%), Gaps = 20/471 (4%)

Query: 2   NPLWTFHD---LLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +P+ T H    LL+A I G  +       +     D+R++A  + F A+KG  +D H F+
Sbjct: 8   SPMMTLHQAFDLLRARIPGVRLVGEGATPLARAHTDTRTLAAGDLFVALKGERFDAHQFL 67

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A               A +    +P   V D L AL  LA   R +    +IA+TGS 
Sbjct: 68  SQAR----RAGAAAAIAHAGLADAGLPGIEVPDTLAALGALAAGWRAQRDLPLIAVTGSN 123

Query: 118 GKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           GKTT  +M+             A  G++NN +GVPLTL R+    +  + ELGM+H GEI
Sbjct: 124 GKTTVTQMIAAVLRAWKGDAALATQGNFNNDVGVPLTLLRLRPGHEAAVVELGMNHPGEI 183

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  + RP +A++      HL     +E +A     +   L   GT      D+F  L 
Sbjct: 184 ANLADIARPTVALVNNAQREHLEFMHTVEAVARENGSVLSALPADGTAVFPAADAFTPLW 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +      G +   +FG+    + +    +       + +     + +      G H   N
Sbjct: 244 RE---LAGTRHCLTFGE-TAGEVRCAAAQWGGGAWQVRIDTPNGAFDTRLAIAGRHNVTN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L            + +  + L+ F P  GR +           T++D+SYNANP S+ A
Sbjct: 300 ALAATACALAAGVPLASIAQGLAAFAPVNGRSRALAVRCGGRSITVVDDSYNANPDSVHA 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI VL+ +     G R+ VLGDM E+G+    FH +         I  ++  G       
Sbjct: 360 AIEVLAALP----GPRLLVLGDMGEVGDQGPQFHAEAGAHARARGIEQLFALGDLSAHAV 415

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            A   +    + + M  L   +  +L     V+VK S      +++  L  
Sbjct: 416 QACGTAAR--HFKDMATLQAAVGQALPTVGSVLVKGSRFMKMEQVVQALQA 464


>gi|304384057|ref|ZP_07366512.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
 gi|304334845|gb|EFM01120.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Prevotella marshii DSM 16973]
          Length = 433

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 183/435 (42%), Gaps = 17/435 (3%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ D+R       FFA+ G  ++G+ F   A++ G    VV+    A+          V 
Sbjct: 16  ITTDTRDCPADSIFFALHGDTFNGNAFAAKALEAGCAYAVVDEPQYANADDD--RYLMVP 73

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL  LA   R +  A II ITG+ GKTTTKE++   L+         G++NNHIGV
Sbjct: 74  DSLKALQDLARHHRRQMPARIIGITGTNGKTTTKELIAAVLAEKYNVLYTQGNFNNHIGV 133

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P TL R+  + + G+ E+G +H GEI  L  +  P   +IT +  AHL  F   E +   
Sbjct: 134 PKTLLRLKPEHEVGVIEMGANHPGEIACLAGIAEPDCGMITNVGKAHLEGFGSFEGVIKT 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ L       +  D+    L         ++      ++   + Q          
Sbjct: 194 KGELYDFLRTKLKSTVFIDNDNPYLCDISQGLNLVRYGCRPAENLLIEGQAASSTPLL-- 251

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +          +V    IG +   N+L    +    +   +    ALS + P    G  
Sbjct: 252 QFRWRHSTDAWHDVGTQLIGSYNLTNLLAAACVGLYFSIAPEQIDHALSHYTP----GNN 307

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                      LI ++YNANP SM AA++   ++    +   +A+LGDM E+G +S + H
Sbjct: 308 RSQLAVTAHNRLIIDAYNANPTSMNAALTNFEEMDVPKK---MAILGDMKELGTVSHAEH 364

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L + L    I  VWL G      +    +         ++ +   ++    +G  +++
Sbjct: 365 QKLVDGLRHSTIHTVWLVGEEFGQTETDFRK------FRNVEEVKQALEKERPEGYHILI 418

Query: 450 KSSNSCGFYRLINLL 464
           K S+    Y L  +L
Sbjct: 419 KGSHGTRLYTLPEVL 433


>gi|269792479|ref|YP_003317383.1| Mur ligase middle domain-containing protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100114|gb|ACZ19101.1| Mur ligase middle domain protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 461

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 176/461 (38%), Gaps = 14/461 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T       + G  +G   +     +++DSR +   + F A++G   DGH F+  A+ +G
Sbjct: 6   MTLGQAADLVGGILVGPDMELP-RRVALDSREVLSGDLFVALRGNRTDGHAFVGQALSRG 64

Query: 65  AGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  ++V    +  I           V D   AL ++A          ++ ITGSVGKTTT
Sbjct: 65  ARCLLVEISKLEEIRPGLGGASCLAVPDPELALAEMASHWLKLVSPVVVGITGSVGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           +E++   L    K +    SYN  IG+  T+  M    D  + E G S  GEI  L    
Sbjct: 125 REVILSLLGRRFKVHGSPKSYNTLIGLSATVMGMDRGCDNLVLEYGTSSFGEISKLVSYF 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   VIT +APAHL     ++ +  AK EI E        +   +    +LL       
Sbjct: 185 PPDEMVITEVAPAHLERLRDVQGVLRAKLEILESQRGRFLSYNADN----DLLWGAVTGG 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G+         +  D ++   +         +       +            +    L +
Sbjct: 241 GLTVQRMGVGVRRGDVRISDRRIVWGDDGPRLNFNLHHGDRQLEVSSGLWPLHGAYPLAL 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             ++            V +  +    R R   ++    L+DESYNANP SM  AI    +
Sbjct: 301 SWVMALRFGVEDLFPEVAYGFKPVKGRGRAIRSREGGWLMDESYNANPTSMFGAIDSTLE 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++  G  R  AVLG M EMGE S  +H  + + L+      V L G       D LP   
Sbjct: 361 LARGGSMRPQAVLGGMLEMGEDSSLWHRRIVDRLN--GFQRVILVGDRWP--SDRLPDW- 415

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            V    + +     +   L +G + +VK S        +  
Sbjct: 416 -VVPVGSFEDALE-VPMDLGEGTLTLVKGSRGYKLDLYVEA 454


>gi|299141374|ref|ZP_07034511.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
 gi|298577334|gb|EFI49203.1| Mur ligase domain protein/alanine racemase [Prevotella oris C735]
          Length = 825

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 108/471 (22%), Positives = 185/471 (39%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      +  +  DSRS+    +  FFA+K    DGH +I 
Sbjct: 1   MT--YTIEKVTTLIGARRFGAS-DAKIGFVLTDSRSLCFPEETLFFALKSGRNDGHYYIP 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV       +          V D L AL +LA   R      I+ ITGS 
Sbjct: 58  ELYRRGVRNFVVTEVPADYATEYAEANFLKVVDSLEALQRLAERHRDEFNIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   L           SYN+ +GVPL++  +      GIFE G+S  GE+  
Sbjct: 118 GKTMVKEWLNQLLCDDMFITRSPRSYNSQVGVPLSVWLLNEHTQVGIFEAGISQPGEMLA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF   E     K  +F       T+  N DD        
Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFISKEMKCKEKLILFH---DAKTVVYNGDDPIVNGCVN 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +      + ++   K K A F ++  ++    + +    +G         I      N  
Sbjct: 235 ELEDFKGERLFWSLKDKRAPFFIKSVEKKETATTVTYIYKGNESWYSLPFIDDASVTNSF 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L   VD   + +    P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 ACAAVALTLGVGVDVLDERMQQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + G  +   + ++  +     +      G  + +    
Sbjct: 352 DFMNRRPDHQGRRHTLILSDIYQSGMTTDELYQEVGMLCQQRGVEKFIGVGKDLQSHAYC 411

Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +      ++ E+++ L    +   L   +V+++K +   GF +L  LL+++
Sbjct: 412 IGVKAK-YFFESVEELIDSDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 460


>gi|305680934|ref|ZP_07403741.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
 gi|305659139|gb|EFM48639.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Corynebacterium matruchotii ATCC 14266]
          Length = 496

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 113/498 (22%), Positives = 180/498 (36%), Gaps = 39/498 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDF--- 56
           M  L    ++   + G          + G +  DSR +A  + F A+ G   DGHD+   
Sbjct: 1   MITL-RLDEIAAIVGGRLADATGAEVITGNVEFDSRKVASGDLFVALSGVKVDGHDYAAA 59

Query: 57  --------ILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                   +L A   G   V+      V+    A+       V  V   L  + KLA   
Sbjct: 60  AMDRGAAGVLAARPVGVPAVIVPPATEVDHHSYATEHDTDGSVAAV---LEGMAKLARYV 116

Query: 103 RLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             +      T+I ITGS GKT+TK+++   L     T A  GS+NN IG P T  R    
Sbjct: 117 VDKLSARGLTVIGITGSAGKTSTKDIVHTILELAGDTVAPPGSFNNEIGHPYTALRCTEA 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    +G I  L  +  PHI V+  +  AH+  F   + IA  K E+ E L  
Sbjct: 177 TKYLVSEMSARSIGNIAHLAAIAPPHIGVVLNVGTAHMGEFGSRDNIARTKGELVEALPA 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV----- 274
            G   LN DD +   +  ++ A    T++SF              +    S         
Sbjct: 237 DGIAVLNADDDYVAAMADRTSA----TVWSFSTLHKPVRVAATDIRLDNLSRPTFTLIGT 292

Query: 275 --QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             Q    + +V     G H   N L           D  T  + L     +         
Sbjct: 293 DSQKVTHTAQVTLQIFGEHQVANALAAATAALAAGVDFATVAQGLRAHTVRSAHRMDVHH 352

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A N         + N            L+        R IAVLG M E+G+ + + H++L
Sbjct: 353 AGNDVIVIDDAYNANPESMRAGLRALALAAAKNGPGARSIAVLGPMAELGQDATADHVEL 412

Query: 393 AEVLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++   I  V + G        +  A    +    +         +   L  GDV++V
Sbjct: 413 MRTVAEQGIDLVVVVGTDENARAMINAAAAMGLRAIPTADTTQAATEVLKVLGRGDVILV 472

Query: 450 KSSNSCGFYRLINLLLEE 467
           K+SN+   +++   ++ +
Sbjct: 473 KASNAYRLWQVAEAVVAQ 490


>gi|325109905|ref|YP_004270973.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
 gi|324970173|gb|ADY60951.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Planctomyces
           brasiliensis DSM 5305]
          Length = 473

 Score =  197 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 144/471 (30%), Positives = 227/471 (48%), Gaps = 24/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   + Q + G S G  P   V G SIDSR++ P + F+A+ G + DGH F+  A
Sbjct: 11  MMP-TTLQKITQQLCGRSAG-SPNSNVLGHSIDSRTLNPGDVFWALPGRNCDGHQFVTAA 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA   VV+  +    G    P   V+DV  AL + +   R   +A +I +TGSVGKT
Sbjct: 69  FEKGAAAAVVSQPVTREAG----PCIQVEDVAAALAEASFEHRNSLEALMIGLTGSVGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT++ML   LS      A   ++NN +GVPL+L  +    ++ + E+G S  GEI  L  
Sbjct: 125 TTRQMLHAVLSKAYTGTASRENFNNRLGVPLSLLGISEADEYAVIEMGASAQGEIGALGE 184

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           LV+P IA++T IAPAHL  F  IE + S K+E+F+ L ++G   L         ++ + H
Sbjct: 185 LVQPEIALLTQIAPAHLDGFGSIEGVISGKSELFDNLPESGLAVLPEHLYVMPAIRRRIH 244

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +     + + G+  +AD  L   +  S Q   E            +  G H A +  + +
Sbjct: 245 S----RVLTVGQGPSADICLNNIRLDSGQLKFECDGD----SFRMNAPGKHFASSAGLCV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L          L  F P EGR     C    G +T++D++YNA+P S   +  ++
Sbjct: 297 AIARELGLTTAQIQAGLENFSPVEGRC----CRRMIGDWTVLDDTYNASPIS--MSAGLV 350

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S +     G RIA+LGDM  +GE ++ +H  L + ++   I ++ + G     +  A  R
Sbjct: 351 SLLQTSVSGPRIAILGDMLCLGEHAKYYHRKLGQEVARTGIDYLLVYGEFADHVAAAATR 410

Query: 421 SI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  +     ++ L   +   L  G  +++K+S +    RLI +L  E
Sbjct: 411 GGMSASRIAAFPKLEQLQELLPLWLSPGAGMLLKASRNMQLERLIPVLEAE 461


>gi|261401200|ref|ZP_05987325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208881|gb|EEZ75336.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria lactamica ATCC 23970]
          Length = 452

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L   T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTHTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLGLNDVAEGLKGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|319901186|ref|YP_004160914.1| alanine racemase [Bacteroides helcogenes P 36-108]
 gi|319416217|gb|ADV43328.1| alanine racemase [Bacteroides helcogenes P 36-108]
          Length = 831

 Score =  197 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 111/479 (23%), Positives = 204/479 (42%), Gaps = 24/479 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  ++  ++++ I    IG V    ++ +  DSRS++   +  FFA+     DG  +I 
Sbjct: 1   MS--YSIENIVEIIGAQRIGNV-SATIDWLLTDSRSLSFPEETLFFALTTKRNDGARYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
               +G    VV+ + +              +     V + L AL KLA   R + +  +
Sbjct: 58  DLYARGVRNFVVSKESMKRFDVQPFSGSQFSTANFLVVSNPLKALQKLAEQHREQFQVPV 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKT  KE L   LS+ +       SYN+ IGVPL++ +M       IFE G+S
Sbjct: 118 IGITGSNGKTIVKEWLHQLLSAERVIVRSPRSYNSQIGVPLSVWQMNEQSGLAIFEAGIS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GE+R L ++++P I ++T I  AH  NF  ++E    K  +F+  +    +  N DD 
Sbjct: 178 EPGEMRALQNIIKPTIGILTNIGGAHQENFFSLQEKCMEKLALFKNCD---VVIYNGDDE 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F     AKS     +  +S  K       + K ++  + + +  +            I  
Sbjct: 235 FISNCVAKSMLSAREIAWSR-KDMERPLYIGKVEKKDDCTVISYRYLDMDNTFTLPFIDD 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N L  L     L    +   + +    P      R      +    LI++SYN++ 
Sbjct: 294 ASVENSLNCLAACLYLMLPAEKITERMGRLEPV---AMRLEVKEGKNGCVLINDSYNSDL 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S+  A++ L + S     +R  +L D+ E G+ + + +  +A++++   I  +   G  
Sbjct: 351 GSLDIALNFLYRRSLSNGLKRTLILSDILETGQNTSTLYRQVAQLVNSRKIERIIGVGSE 410

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQS-SLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +I   +    D L   +    L  + +++++K +   GF  L  +L ++
Sbjct: 411 ISTCAARF--NIENAFYPNTDALMNAVVKGKLRLENEIILIKGARKFGFDALTEVLEKK 467


>gi|296129439|ref|YP_003636689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
 gi|296021254|gb|ADG74490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Cellulomonas
           flavigena DSM 20109]
          Length = 476

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 136/469 (28%), Positives = 205/469 (43%), Gaps = 26/469 (5%)

Query: 16  GHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           G      P   V G +  DSR + P   F A+ G H DGHDF          +      +
Sbjct: 15  GTLSATDPGHVVTGPVVTDSREVEPGGLFVALPGEHVDGHDFAAG------AVAAGAALV 68

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLR----------SKATIIAITGSVGKTTTKE 124
           +A+     +P   V DV  AL  LA A   R          S   +I +TGSVGKTTTK+
Sbjct: 69  LAARALPGLPCVVVPDVERALGDLARAVLARLRDAATLPGGSGLRVIGVTGSVGKTTTKD 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L     +   T A + S+NN IG+PLT+ R      F + E+G S  G + +LT +  P
Sbjct: 129 VLAQLCGAAGPTVAPVRSFNNEIGLPLTVLRADEQTRFLVLEMGASGPGHLTYLTDIAPP 188

Query: 185 HIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +AV+  +  AHL  F  GI+ +A AK+EI  GL   G   LN DD     +   +    
Sbjct: 189 DVAVVLVVGQAHLGGFGGGIDAVARAKSEIVAGLLPDGVAVLNGDDPRVRAMADVAPGRA 248

Query: 244 I-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +        + +  D +L    + + +    V     + +V    +G H   N L     
Sbjct: 249 VLFGAAPDAEVRVEDVRLDALGRATFRLVHVVGEDRHARDVALRLVGEHHVHNALAAAAA 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D     L+                     T++D+SYNANP SM+AA+  L+ 
Sbjct: 309 SLQVGLTLDEVAAGLTAADALSPHRMH--VVDRADGVTVVDDSYNANPDSMRAALKALAV 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
           I+   E R +AVLG+M E+G+  ++ H  +  ++   NI    + G    A++D      
Sbjct: 367 IAG-RERRSVAVLGEMLELGDEHRTAHDAIGRLVVRLNIGLTVVVGEGARAIRDGANHEG 425

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V   + +D    F+   L  GDVV+VKSS   G +RL + L+E 
Sbjct: 426 SWGDEVVLVDDVDTAAAFLAQELRAGDVVLVKSSYGAGLWRLGDELVER 474


>gi|254805552|ref|YP_003083773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|254669094|emb|CBA07659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Neisseria
           meningitidis alpha14]
 gi|261391930|emb|CAX49392.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase;
           D-alanyl-D-alanine-adding enzyme) [Neisseria
           meningitidis 8013]
          Length = 452

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SM+AA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|161870658|ref|YP_001599831.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
 gi|161596211|gb|ABX73871.1| UDP-MurNAc-pentapeptide synthetase [Neisseria meningitidis 053442]
          Length = 463

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 12  MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 68

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 69  LAAGAAAVVVSREDCVAMDGA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKT 124

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 125 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 184

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 185 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFK 244

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 245 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SM+AA
Sbjct: 301 AAAAALSLAAGLSLNDVAEGLQGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMRAA 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 358 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 414 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 463


>gi|150025143|ref|YP_001295969.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771684|emb|CAL43158.1| Bifunctional enzyme : Mur ligase domain proteinand alanine racemase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 817

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 203/470 (43%), Gaps = 22/470 (4%)

Query: 1   MNPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFI 57
           M+PL  + H+++  +  +  GI    + + ISIDSRS+       FFA+ GP+ D H +I
Sbjct: 1   MDPLTISLHNIIPILDANFQGIDENIYYDTISIDSRSLQNNENTLFFALVGPNNDAHIYI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + KG    VV    +    +       V + L AL   A   R      II ITGS 
Sbjct: 61  GDLISKGVKNFVVT--YIPKRLTGKANFLIVKNTLVALQIFARYYRNLFHFPIIGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ +GVPL++  +  + + GIFE G+S   E+  
Sbjct: 119 GKTIVKEWLNFLLSPDYNIIRSPKSYNSQVGVPLSVIAINENHNLGIFEAGISTKDEMEN 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I ++T I  AH   F+ I E    K ++F  +E                   
Sbjct: 179 LQKIIQPTIGILTNIGTAHDEGFADISEKIKEKLKLFTAVEVLILNKNKTI--------- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           ++        +++  +  +     + K  ++ + + +  QGK  ++    I     +N +
Sbjct: 230 ETFINKEINTFTWSTNDQSADVFFQKKTLNDHALLNITNQGKYFKIKIPFIDEASLENSM 289

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + ++  L  D+DT    +S   P      R +        TLID+SY+++  S+K A+
Sbjct: 290 HCILVMLYLKYDLDTIKHRISQLFPV---EMRLKVKNGINNCTLIDDSYSSDFQSLKIAL 346

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L     H +     +L D+ + G  ++  ++ +++++    I+ V   G  +   K+ 
Sbjct: 347 DFLENQKQHLKK--TLILSDIYQSGLENEDLYVRVSQLIISNKINRVICIGGVISKYKNK 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               ++V    + +       +     + +++K S    F +++ LL E+
Sbjct: 405 F---LNVISYLSTNDFIEDFDNLDFTNETILIKGSRHFEFEKIVTLLEEK 451


>gi|258647632|ref|ZP_05735101.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
 gi|260852446|gb|EEX72315.1| Mur ligase domain protein/alanine racemase [Prevotella tannerae
           ATCC 51259]
          Length = 824

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 187/463 (40%), Gaps = 12/463 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +   I  H  G      ++ +  DSRS+A      FFA++    DGH ++    +
Sbjct: 3   YTSEQITALIDAHRFGANSDKNIDWLLTDSRSLAFPEATLFFALRSQRNDGHKYVADLYR 62

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +G    VV+      +    +   + V D L AL  LA   R R    ++ ITGS GKT 
Sbjct: 63  RGVRDFVVSALPDDYASRFPAATFYVVADPLKALQHLAECHRRRFDIPVVGITGSNGKTI 122

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS          SYN+ +GVPL++  +      GIFE G+S  GE+  L  +
Sbjct: 123 VKEWLYQLLSPQLVVTRSPRSYNSQVGVPLSVCLLNAQTQLGIFEAGISQPGEMSALRPI 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++P I V+T    AH  NF+ +EE  + K  +F   +    +  + DD        ++  
Sbjct: 183 IQPRIGVMTNTGQAHQENFTSLEEKCAEKLSLF---KDADVLIYDADDPVVAEGVRQASF 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G +  +S  K    D      ++ + +S           +     I +    ++   + 
Sbjct: 240 AGDQLAWSRTK----DEGPLVIRKVAHESERTHITYAYLQQESDFFIPFTDEASVQNAIH 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +++       A          E    R           LI++SYN++  S+  A+  + 
Sbjct: 296 CLAVCLYLHVDAAVIAQRMARLEPVAMRLEVKQGVRGCILINDSYNSDVNSLDIALDFMQ 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +       R+  +L D+ + G   +  +  +AE+++   +  +   G  + A++D     
Sbjct: 356 RRPDRVGMRKTLILSDISQSGMPREQLYAQVAEMVNRRRVDRLIGVGPDLSAMQDLFK-- 413

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           I   +  T   L    +   +  ++V++K + +  F  L  LL
Sbjct: 414 IDAVFYPTTKALLESGKVGRLRNEMVLLKGARAYNFEALTELL 456


>gi|240168221|ref|ZP_04746880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           kansasii ATCC 12478]
          Length = 524

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 130/519 (25%), Positives = 199/519 (38%), Gaps = 68/519 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   +   + G    I PQ      V G +  DSR+I P   F A+ G H DGHD
Sbjct: 1   MIDL-TVAQIADIVGGTLADISPQDAAQRRVTGTVEFDSRAIGPGGLFLALPGAHVDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------- 107
           +                  V +   + +P   V     +L + A+A  L           
Sbjct: 60  YAA-------SAAAAGAVAVLAARPVGVPAIVVT-PERSLAEGALAGVLEHDADGSGAAV 111

Query: 108 -------------------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                               TII ITGS GKT+TK+++   L  +    A  GS+NN +G
Sbjct: 112 LAALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAAVLQPLGVVVAPPGSFNNELG 171

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            P T+ R   D D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA 
Sbjct: 172 HPWTVLRAGRDTDYLILEMSARHPGNIAALAQIATPAIGVVLNVGTAHLGEFGSREAIAR 231

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+E+ + + ++G + LN DD     +   + A  ++          A           +
Sbjct: 232 TKSELPQAVPQSGVVILNADDPAVAAMAEVTAARVVRVSRGSTGDVWAGPVSLDELARPQ 291

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +      Q    EV     G H   N L    +     A +D    AL    P      
Sbjct: 292 FTVHAGATQ---AEVRLGVYGDHQVSNALCAAAVALECGATLDQVATALGGAGPV--SRH 346

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG---------RRIAVLGDMC 379
           R +        T+ID++YNANP SM A +  L+ I+  G G         R  AVLG+M 
Sbjct: 347 RMQVTTRADGVTVIDDAYNANPDSMGAGLQALAWIARGGSGAGSDLAAKRRSWAVLGEMA 406

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----------PRSIHVHY- 426
           E+G  + + H  +  +    ++S + + G    V A+                +      
Sbjct: 407 ELGADAIAEHDRVGRLAVRLDVSRLVVVGTGRSVSAMHHGAVLEGAWGSWGAGADRGTVN 466

Query: 427 SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               D     +++ +  GDV+++K+SNS G   L + L+
Sbjct: 467 VADADAALELLRAEVQPGDVILIKASNSAGLGALADALV 505


>gi|299533122|ref|ZP_07046507.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
 gi|298718899|gb|EFI59871.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni S44]
          Length = 475

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 115/473 (24%), Positives = 188/473 (39%), Gaps = 23/473 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+            +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L K G       D +  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
               S          FG++ +           +  +W            V  H  G H  
Sbjct: 237 WTELSAGRPSLM---FGEAADGAQVFANDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    + LS F P  GR +     +     T++D++YNANP S+
Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDTYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+H +  G     
Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDNGPQFHAEAGALAQQAGIAHFFALGDQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              A        + ++M  L   + + L     V+VK S      +++  +  
Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460


>gi|264680250|ref|YP_003280160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
 gi|262210766|gb|ACY34864.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Comamonas
           testosteroni CNB-2]
          Length = 475

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 116/473 (24%), Positives = 188/473 (39%), Gaps = 23/473 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELTRVHTDTRTLQNGDLFVALKGERFDAHDFLPQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAIASHGLEAAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+            +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASILRAHVGGQGEAALATRGNFNNSIGMPLNLLRMTDAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L K G       D +  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLRFLPKDGVAIFPAGDEYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
               S          FG++ +           +  +W            V  H  G H  
Sbjct: 237 WTELSAGRPSLM---FGEAADGAQVFASDVVWANGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    + LS F P  GR +     +     T++D+SYNANP S+
Sbjct: 294 RNALAAAACAHAAGVPLPAIAQGLSGFEPVTGRSRALAVQIKGQGVTVVDDSYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+H +  G     
Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDDGPQFHAEAGALAQQAGIAHFFALGDQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              A        + ++M  L   + + L     V+VK S      +++  +  
Sbjct: 410 AASAFGSGAR--HFDSMSALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460


>gi|309379062|emb|CBX22364.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 452

 Score =  196 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 135/472 (28%), Positives = 207/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSENKPVSRIVTDSRDIRVGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +  AS+         VDD L AL  LA A R      +  ITGSVGKT
Sbjct: 58  LAAGAAAVVVSREDCASLKDA----LKVDDTLAALQTLAKAWRENVNPFVFGITGSVGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGNDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A+      AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALANNALRAHIGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANLAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLQGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I+VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 INVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|328675664|gb|AEB28339.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D- alanyl ligase
           [Francisella cf. novicida 3523]
          Length = 453

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 210/472 (44%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ           +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYSGEDVSIQTVAINSNEVRQDCLFVAII-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  V+V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAVLVSKKQ-----DLDIPQVVCSNTIKGLRALAKEYRKTLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L S K  +      N  +GVP+T+   P +VDF + E G +  GEI+    
Sbjct: 111 TVKEMIVTLLGSKKVHFTQGNFNNY-LGVPMTILETPHNVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +  +HL N   ++ +   K E+ + L K G   +N DD        K  
Sbjct: 170 IIQPNIAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDDERIPAYADKLD 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    S   +++AD  +  ++   E   +++++  K        IG H   N ++ +
Sbjct: 230 CKKITCSMS---NQDADILILDYQVTPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V     + ++ ++        +GR    +        TL+D++YNA+  +++AAI  L
Sbjct: 287 ASVVAAGFEPNSFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G+R+  +  M E+G+ ++++H  + + L+  N+  ++L G  +++       
Sbjct: 344 AEF----DGKRVIAITSMRELGDEAENYHRKMGQWLNKANLDKIFLFGEKNLINFALEEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLEE 467
           ++ ++ Y +    L   +   L +       + +K + S     ++  + + 
Sbjct: 400 KNSNIKYYDDKQQLNDDLLKVLTEYKSQNTKLTIKGARSFKMEEVVAFVKQR 451


>gi|330995980|ref|ZP_08319874.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
 gi|329573977|gb|EGG55555.1| alanine racemase [Paraprevotella xylaniphila YIT 11841]
          Length = 822

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 186/466 (39%), Gaps = 14/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M+  +T   +   +  H  G      V  I  DSRS+       FFA++    DGH +I 
Sbjct: 1   MS--YTLERIASLVGAHLWG-DEAVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++G    VV+                V   L AL +LA   R      ++ ITGS G
Sbjct: 58  ELYRRGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   LS  ++      SYN+ IGVPL++  +    + G+FE G+S  GE+  L
Sbjct: 118 KTVVKEWLYQLLSPERRVTRSPRSYNSQIGVPLSVWNLNEKSEVGLFEAGISEPGEMEAL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +++P I V T +  AH  NF+  E+    K ++F+  +       +   +        
Sbjct: 178 QSVIQPTIGVFTCLGDAHQENFTSYEQKCMEKLKLFKDAKVLVYDMDDACVAGCV----N 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A   +      + ++    +   ++   ++ +    +GK        I      N + 
Sbjct: 234 RSAFKGEYFAWSRQQRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVS 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   L    +T    ++V  P      R      +   TLI++SYN++  S+  A+ 
Sbjct: 294 CLAVCLHLGMSPETIAARMAVLEPV---AMRLEVKEGRSGCTLINDSYNSDYNSLDIALD 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +++       +R  VL D+ + G   +  +  +A ++++  +      G  + A++   
Sbjct: 351 FMNRRPDCAGRKRTLVLSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVRGLF 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   +  + D L        +  +V+++K + S  F  L   L
Sbjct: 411 --GMEACFYRSTDELLGSGVLDTLHDEVILIKGARSFRFDVLTEHL 454


>gi|326388914|ref|ZP_08210496.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206514|gb|EGD57349.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 510

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 172/489 (35%), Positives = 235/489 (48%), Gaps = 36/489 (7%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LW   D+  A  G   G      V+G + DSR +   + F A+KG + DGH F+  A 
Sbjct: 18  TALWRAADIAAATGGKLGGG--DFAVSGCAFDSREVMEGDLFIALKGENADGHRFVDGAF 75

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAARLRSKATIIAITGSVGK 119
            KGA   +V   +         P   V D +  L     A  ARL   A +I +TGS GK
Sbjct: 76  LKGAAGALVEQAVA-------HPHVLVADTMAGLEALARAARARLDPAARVIGVTGSAGK 128

Query: 120 TTTKEMLTIALSSIK--KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T  KE L  AL      + +  + SYNNH+GVPL+LARMP    FG+FE+GM+H GE+  
Sbjct: 129 TGVKEALFAALDRSSRGRAHRSVKSYNNHVGVPLSLARMPARTRFGVFEMGMNHAGELSA 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LVRPH+A++TTIAPAH+ +FSG   IA AKAEIFEGLE  G   +  D     LL A
Sbjct: 189 LTRLVRPHVAIVTTIAPAHIGHFSGEAAIAEAKAEIFEGLEPGGVAIVPADSPHCALLVA 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS------WMEVQLQGKSMEVVHHGIGYH 291
                    + +FG +++AD +L                +       + +       G H
Sbjct: 249 -HAQRHAGLVITFGTAEHADVRLVDALPTVTGGTLVTAEFSARTGAARKLCYTVAQPGAH 307

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL----NQGFFTLIDESYN 347
            A N L  +  V+ +  D+  A  AL+      GRG R+  A       G   LIDESYN
Sbjct: 308 WAANSLAVMAAVAAVGGDLGAAGLALAEMAGLPGRGARHAIAASGGDGSGKALLIDESYN 367

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANPASM    + ++ +      RR+AVLG M E+GE   ++H  LAE ++   I  V L 
Sbjct: 368 ANPASM---SATIAALGATPARRRVAVLGAMRELGEGEAAYHAALAEPIAAAGIDRVVLV 424

Query: 408 GFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           G  + AL DAL ++           VH +   +       +    GD ++VK SNS G  
Sbjct: 425 GAEMAALADALGKNAQGALAAGFDMVHVATAAEAAECLAAAGPQGGDAILVKGSNSVGLG 484

Query: 459 RLINLLLEE 467
            L+  L+  
Sbjct: 485 ALVKALIAR 493


>gi|54023730|ref|YP_117972.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
 gi|54015238|dbj|BAD56608.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate-D-alanyl-D-alanine ligase [Nocardia
           farcinica IFM 10152]
          Length = 499

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 119/506 (23%), Positives = 178/506 (35%), Gaps = 55/506 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T  ++   + G       P+  V G    DSR I   + F A+ G   DGHD+  
Sbjct: 1   MIEM-TLREIADVVGGTLHDAPDPEVRVTGTAEFDSRRIGSGDLFLALPGERADGHDYAA 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-------- 99
            AV             G   VVV     +           V     AL   A        
Sbjct: 60  AAVAAGAAAVLAARPVGVPAVVVEPRRCS-----------VPATSMALAHDADGSGAAVL 108

Query: 100 -----------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                               T++ +TGS GKT+TK++L   L+ +    A  GS+NN +G
Sbjct: 109 AALAALARASVERLSAAGGLTVVGVTGSSGKTSTKDLLAAVLAPLGPVVAPPGSFNNELG 168

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            P T  R   D  F + E+    +G I  L  +  P I V+  +  AHL  F   E IA 
Sbjct: 169 HPWTALRATADTRFLVLEMSARGVGHIAALAEVAPPRIGVVLNVGTAHLGEFGSREAIAR 228

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+ E L   G   LN DD           A     +   G S +AD++  + +   +
Sbjct: 229 AKGELVEALPADGLAILNADDPNVAA----MAARTAARVVRVGLSGDADYRASEVRLDEQ 284

Query: 269 -QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++   +     S E+     G H   N L    + S   AD+ T   ALS       R 
Sbjct: 285 ARATFTLHTPAGSTEIRLGVHGEHQVGNALAAAAVASECGADLATVAAALSGARAVSERR 344

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R   +         + N +         V    +     R  AVLG+M E+GE S  
Sbjct: 345 MDVRTTADGVTVVNDSYNANPDSVRAALKALVTMSRAGERPRRSWAVLGEMAELGEESVL 404

Query: 388 FHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSL 441
            H  +  +    ++  + + G      A+                   +D     +   +
Sbjct: 405 EHDGIGRLAVRLDVDRLVVVGTGRPSRAMHQGAVMEGSWGEESVLVPDIDAAVALLDREV 464

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
             GDVV+VK+S S G + +   L   
Sbjct: 465 EPGDVVLVKASKSVGLWEVAEHLTRR 490


>gi|212550421|ref|YP_002308738.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548659|dbj|BAG83327.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl- D-alanine ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 430

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 110/435 (25%), Positives = 198/435 (45%), Gaps = 20/435 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +SR       FFA++G  +DG+D+I+ A+  GA   V + + +         +  V 
Sbjct: 16  ITTNSRICPTNSLFFALRGEKFDGNDYIMEALMSGAIYAVGDRNDLPENE----RIIKVG 71

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +VL  L  LA   R    A IIAITG+ GKTTTKE++   LSS  KT     + NN+IGV
Sbjct: 72  NVLQTLQSLANYHRKLMNAKIIAITGTNGKTTTKELIATVLSSKYKTLYTQENLNNYIGV 131

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           PLTL R+  +  F + E+G SH+ EIR L  +  P   +IT +  AHL  F  ++ +  A
Sbjct: 132 PLTLLRLNSEHQFAVIEMGASHVNEIRMLCQIAEPDYGIITNVGKAHLEGFGSLDGVVKA 191

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K E+++ +   G +     D    L+  + +       Y          ++  +      
Sbjct: 192 KTELYDFIRDKGGVVFANLD---NLILKEWYNSFSVIYYGTTSKAFVYGRMIGFDPTL-- 246

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +E        ++V H +G +  +N+L ++ + +    +       ++ + P   R + 
Sbjct: 247 -VLEWSKNSNKNKIVTHFVGGYNLENILASICVANYFGVEDYRINVVIANYIPINNRSQN 305

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +   N     LI ++YNANP SM+ A+    ++    +   + +LG+M E+G  S+  H
Sbjct: 306 CKTKKNN----LIVDAYNANPDSMRVALDNFYKLRISPK---MVILGEMGELGSYSKEEH 358

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   L    +  V+L G +     + L            +    +++ + V+G  +++
Sbjct: 359 QKVLNSLWGSKVDKVFLIGRNFE---ECLLPCSGWKLFRQTEDCLEYLRMTSVEGYHILI 415

Query: 450 KSSNSCGFYRLINLL 464
           K S +    ++ + L
Sbjct: 416 KGSRNNQLEKIFHYL 430


>gi|120609511|ref|YP_969189.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587975|gb|ABM31415.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Acidovorax citrulli AAC00-1]
          Length = 501

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 110/479 (22%), Positives = 193/479 (40%), Gaps = 23/479 (4%)

Query: 1   MN--PLWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           M+  P+ T       +Q       +   P   +  +  D+R++   + F A++G  +D +
Sbjct: 1   MSGAPMLTLQQAHALVQARIPRARLVGEPGTPLLRVHTDTRTLQAGDLFVALRGERFDAN 60

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DF+  A     G           + +  +P   V D L AL  LA   R R    ++ +T
Sbjct: 61  DFLAQARA---GGAAAALAHPGRLDAAGLPGIEVPDTLAALGALAAGWRARLDLPLVGVT 117

Query: 115 GSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M+            +A  G++NN IGVPL L R+    +  + ELGM+H 
Sbjct: 118 GSNGKTTVTQMIASVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRDAHEAAVIELGMNHP 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + RP +A++      HL     ++ +A     +   L   G       D++ 
Sbjct: 178 GEIAVLAGIARPTVALVNNAQREHLEFMHTVQAVAEENGSVISALPPDGVAVFPAADTYA 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L +  +      T         AD +    +  +    +++     + +      G H 
Sbjct: 238 PLWRGLAGTRRCLTFCDRA-GVAADVRCTDARWETGAWNVQIDTPQGAFDGTLRIAGRHN 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYN 347
             N L          A +D   + L+ F P +GR + +     +        T +D++YN
Sbjct: 297 VANALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFVATVAQPGGAPRRITAVDDTYN 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ANP SM+AAI VL+++     G ++ V+GDM E+G+    FH +         I  ++  
Sbjct: 357 ANPDSMRAAIDVLAELP----GPQLLVMGDMGEVGDQGPQFHAEAGGHARERGIGRLFAL 412

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G   +    A        + + M  L   ++ +  +   V+VK S      +++  L  
Sbjct: 413 GALGIHAVQAF--GPQARHFDDMASLLAAVRKAAPESGSVLVKGSRFMKMEQVVQALEA 469


>gi|241668968|ref|ZP_04756546.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877500|ref|ZP_05250210.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843521|gb|EET21935.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 452

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 193/471 (40%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L        IG      +  +SI+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLATQAGLEYIG--EDVSIQTVSINSNEVNQDALFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         ++IP    ++ +  L  LA   R   K  II++TGS GKT
Sbjct: 56  IANGAKALLVSKKQ-----DINIPQVVCNNTIKGLRALAKEYRKSLKMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L   K  +      N  +GVP+T+   P DVDF + E G S  GEI+    
Sbjct: 111 TVKEMIVTLLGGKKVHFTQGNFNNY-LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAE 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P++A+IT +  +HL N   ++ +   K E+ + L K G   +N DD        K  
Sbjct: 170 IIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGVCIVNLDDERIPAYADKLD 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    S   +       +   +  +        +               +   + ++
Sbjct: 230 CKKITCSMSNQDADIIILDYQVTPELYDVKIRIFNKEYSYQLPNIGKHNLSNSMLAIASV 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   D     + +  +  +    K           TL+D++YNA+  +++AAI+ L
Sbjct: 290 VAAGLEPNDFLQNTQNIKNYKGRFSTEKLNDKL------TLVDDTYNASAGAVQAAIADL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G+++  +  M E+G+  +++H  + + L+   + +++L G  +++       
Sbjct: 344 AEF----DGKKVIAITSMRELGDEGENYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLE 466
              +V Y +    L   +   L         + VK + S     ++  + E
Sbjct: 400 EGSNVKYYDDKKQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKE 450


>gi|316984925|gb|EFV63881.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
 gi|325140931|gb|EGC63438.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis CU385]
 gi|325199604|gb|ADY95059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis H44/76]
          Length = 439

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/454 (27%), Positives = 199/454 (43%), Gaps = 25/454 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++   
Sbjct: 3   SESKPVSRIVTDSRDIRAGDVFFALAGERFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                          ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAAI VL+++       RI V+GD
Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347

Query: 378 MCEMG----ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           M E+G    + + + H ++        I   +  G + +   +         +    D L
Sbjct: 348 MGELGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPL 405

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              ++  L +   V+VK S       ++  L ++
Sbjct: 406 IQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 439


>gi|296313578|ref|ZP_06863519.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839879|gb|EFH23817.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 452

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 206/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR I   + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  +A A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMVAKAWRENVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDNAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P  A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPDAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR       +     TLID++YNANP SMKAA
Sbjct: 290 AAAAALSLAAGLSLNDVAEGLKGFSNIKGRLN---VKVGIKGATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 ETF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|323344463|ref|ZP_08084688.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
 gi|323094590|gb|EFZ37166.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Prevotella oralis ATCC 33269]
          Length = 896

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 111/471 (23%), Positives = 191/471 (40%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I  H  G      +  +  DSRS+  A +  FFA+K    DG  FI 
Sbjct: 73  MT--YTIERVATLIGAHRYGNR-DANIGFLLTDSRSLCFAEETLFFALKTDRNDGQHFIG 129

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV             +    V + LGAL +LA   R      ++ ITGS 
Sbjct: 130 DLYRRGVFNFVVEHLPDNYDTLYPDVNFLKVVNPLGALQRLAERHRDEFDIPVVGITGSN 189

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ IGVPL++  M      G+FE G+S  GE+  
Sbjct: 190 GKTMVKEWLYQLLSPQMVVTRSPRSYNSQIGVPLSVWLMNELTQIGVFEAGISMPGEMAS 249

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V+T I  AH  NF+ +EE  S K ++                +  + L A
Sbjct: 250 LRSIIQPTIGVLTGIGTAHQENFASMEEKCSEKLKL-------FHDSEAVIYNADDDLIA 302

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +            G S+         K   ++          + +   + I +  + +++
Sbjct: 303 RCMEQSGYKGRRMGWSQKDRNAPLFVKTIEKKENTTTVTYVYNGKEGQYSIPFIDSASVV 362

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++  +++      +A          E    R      Q   TLI++SYN++  S+  A+
Sbjct: 363 NSITCMAVSLYLGLSADDLDRRMQRLEPVAMRLEVKTGQHGCTLINDSYNSDVKSLDIAL 422

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + GE  +  + +++ ++    +      G  + A  D 
Sbjct: 423 DFMNRRPDHKGRRHTLILSDIYQSGESPRELYREVSTLVQGRGVEKFIGIGPEISAQSDE 482

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +       + E++D      +  SL   +V+++K S S GF  L  LL ++
Sbjct: 483 IKVREKF-FFESVDSFISSEVFRSLR-DEVILLKGSRSFGFDLLTELLAQK 531


>gi|159900033|ref|YP_001546280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159893072|gb|ABX06152.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 489

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 119/484 (24%), Positives = 210/484 (43%), Gaps = 48/484 (9%)

Query: 4   LWTFHDLLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           + T   ++  ++            +    +    IDSR  +    F A++G   DGHDFI
Sbjct: 1   MLTLQTVVDGVKIASEPRLQLPAALANLPIRSACIDSREASVDGLFVALQGERVDGHDFI 60

Query: 58  ---------LHAVQKGAGL-----------VVVNTD---MVASIGSLSIPVFGVDDVLGA 94
                       VQ+G              V+++ D   +     + +  +  VD  L A
Sbjct: 61  AAAAARGVRAALVQRGRLADPSQLGLDRPFVLLDPDQGQIANEAPANAFFLISVDQTLTA 120

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +++LA   R +    ++ ITGSVGKT+TKE+L   L+   +T+    SYN+   +PL + 
Sbjct: 121 MHRLATRYRQQQDLVVVGITGSVGKTSTKEVLAAMLAPTMRTHKSPRSYNSENTLPLVVL 180

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +    + E+G+ + G++  LT + +P I ++T +  +HL     IE +A AK+E+ 
Sbjct: 181 GIEPEHQIAVLEMGIYNKGDLALLTTIAQPQIGIVTNVGASHLERMHTIENVAEAKSELV 240

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWME 273
           + L   G   LNYDD     ++  + A     ++++G    AD      +    +    +
Sbjct: 241 QALPADGWAILNYDDQRVRAMQQVTKAQ----VFTYGLDPEADLWADNIESRGLDGIGFD 296

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +G+   +    IG H     L    +  +L    D+ I+ L                
Sbjct: 297 AHYRGEQWHIKLPLIGLHSVHTALAAAAVGIVLGLSWDSLIQGLRSSAQLRLLSYPA--- 353

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G  TLID++YNA+P S  AA+++L+++    +GRRIAV GDM E+G   +S H  + 
Sbjct: 354 --VGGATLIDDTYNASPVSCIAALNLLAEL----QGRRIAVFGDMAELGPHDESGHRLVG 407

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +   +  +++ G     + +        +  VH       L   +QS+L   D V+V
Sbjct: 408 VRAADV-VDQLYVVGEKARWIGEEAIEVGLPAEQVHVLPDKAALIAALQSTLQANDYVLV 466

Query: 450 KSSN 453
           K S 
Sbjct: 467 KGSR 470


>gi|284042879|ref|YP_003393219.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
 gi|283947100|gb|ADB49844.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Conexibacter woesei DSM 14684]
          Length = 447

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/456 (25%), Positives = 190/456 (41%), Gaps = 31/456 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G  +G  P   V G SIDSR++ P + +  I     DGH +I  A+  GA
Sbjct: 4   STSELAAHLGGELVG--PDVGVEGASIDSRTLRPGQLYVPIVAER-DGHAYIPAALDAGA 60

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +   +       +      V D   A+ +L V AR R     I +TGSVGKTTTK++
Sbjct: 61  PAYLTEQE------PVGGTAIRVGDTAAAMLRLGVLARGRVGG-AIGVTGSVGKTTTKDL 113

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L++  +T A   S+NN +G+PLTL   P    + + E+G    G+I  L  + RP 
Sbjct: 114 LAGCLAARFRTAASERSFNNELGLPLTLFNAPEAARWAVLEMGARRAGDIERLAAVARPE 173

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++T++  AHL     ++ +A  K E+   L  +G   LN+DD     + + S +  + 
Sbjct: 174 VGIVTSVDMAHLEYMGDLDGVARVKGELVAALPASGLAVLNFDDPRVRGMASLSASPVLG 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                     AD           ++   +       EV     G H   N L    +   
Sbjct: 234 YSVGGDADVRADDVTLDQDL---RARFRLSSPWGQAEVRLGVHGLHQVPNALAAATVALW 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++T   AL+       R + +          L+ + YNA P S +A +  L+ +  
Sbjct: 291 CGVPIETVAAALAQSKGSPWRMEVHHMPDG---PLLVVDCYNAMPTSTEAGLRSLAALPG 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +   +A+LG M E+G+ S+S H  +A V     I  V   G+      +A        
Sbjct: 348 ERK---LALLGLMAELGDHSESEHRRIARVAEELGIEAV---GYETPLYGEA-------- 393

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           Y    +     ++ +L  GD  +VK S       ++
Sbjct: 394 YVTGAEEAVALLR-TLGTGDAALVKGSRVTRLEDVV 428


>gi|62185438|ref|YP_220223.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
 gi|62148505|emb|CAH64276.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila abortus S26/3]
          Length = 448

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 113/437 (25%), Positives = 196/437 (44%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDS+ + P + FFA+ G   DGH F+  A Q GA   VV+ D      S  + +
Sbjct: 25  KISGVAIDSQQVRPGDLFFALSGQCTDGHRFLKQAAQSGAVAAVVSKDYQGD--SFGLEL 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   AL +   +     + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+
Sbjct: 83  IVVNDTTEALKEAGESQSHLLQGTIVGITGSIGKTTTKAFTQTLLSSVYRVYASPKSYNS 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL+L     D DF I E+G+S    ++ L  +V P +AVIT I   H+ NF   + 
Sbjct: 143 QLTVPLSLLMADGDEDFVILEMGVSEPKNMQDLLSIVEPEVAVITNITDQHVMNF-PDQG 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     E  + L  +    L  D  ++     +S +    +   +      D     + +
Sbjct: 202 VQGIAEEKSQILCNSRVQLLPKDSPWYPHFIKQSMSAEKFSFAFY------DETADFYYK 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  + +      ++            N+L++L +  +L   VD  I +         
Sbjct: 256 VIRKDSVVISTPEGDIDFAVAFPYKPAYSNLLISLSLAWLLDVPVDRIIHSCCDLQLPPM 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++      Q    +I+++YNA P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 316 RFEQSIRNGIQ----IINDAYNACPEAMLAALDAIPH--PSEGGKVILILGHMAELGNYS 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A    L   + ++  G   L ++  +      V +  +  G+   ++  +  G
Sbjct: 370 EEGHTVVANKA-LSKANIIFFIGEKWLPIRHLVKHGACEVSFYPSAQGIEEMLKKVVQQG 428

Query: 445 DVVVVKSSNSCGFYRLI 461
           D+V++K S S     L+
Sbjct: 429 DIVLLKGSRSLALESLL 445


>gi|148244320|ref|YP_001219014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326147|dbj|BAF61290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 426

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 112/461 (24%), Positives = 178/461 (38%), Gaps = 39/461 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T + + + ++   I         G+  D+R       F A+ G ++D HD+I  A Q GA
Sbjct: 5   TTNTIAKVLK---IDYSVNVKFKGVYTDTRKRMDGALFIALVGDNFDAHDYIYQAQQMGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ N  +        +P+  V+D   AL+ +A       K  +IAITGS GKTTTK M
Sbjct: 62  VAIIANKSV-----DSQLPILVVNDTQTALSTIASWHLQNIKPIVIAITGSNGKTTTKNM 116

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LS    T    G+ NNH+GVP+TL  +     + + E+G +HLGEI  L  +V P 
Sbjct: 117 LANILSLQAPTLKTQGNLNNHLGVPMTLLTLEKQHQYAVIEMGANHLGEISHLRKIVNPD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T    AH+  F G + +  AK EI+    K      +                   
Sbjct: 177 IAIVTNTLDAHIGTFGGFDNLVKAKGEIYSKNSKNIINTQSIFTGDV------------- 223

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SF    N           +              + +   +      N+   L   S 
Sbjct: 224 ---SFTPHGNTKVSGNNGDIFASNIVNNKFDLNIHQQKISITLNLIGIHNIDNAL-AASA 279

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +   I  +                ++   F +ID++YNANP S   A+  L   S 
Sbjct: 280 CVYPLGIDINLIKQGLEATKAEPGRLEIIHTKQFRIIDDTYNANPYSTIIALKTLQNFS- 338

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              G +I VLG M E+G  S+ FH  + ++         +  G   L             
Sbjct: 339 ---GEKIIVLGTMEELGNYSKMFHFKIGQLAKKSA-DTFYSYGKIALHHCS--------I 386

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + E    L   I ++      +++K S      +L++LL +
Sbjct: 387 HFEKKQPLANHILTN-HTNATILIKGSRMAKLNKLVDLLKK 426


>gi|315443918|ref|YP_004076797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
 gi|315262221|gb|ADT98962.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium sp. Spyr1]
          Length = 501

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 120/496 (24%), Positives = 197/496 (39%), Gaps = 35/496 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            +   + + + G    +         V G +  DSR++     F A+ G   DGHDF   
Sbjct: 1   MSLRRIAEIVGGRLADVSADEADRLRVTGTVEFDSRAVTAGGLFLALPGARSDGHDFAAT 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLA------------------ 99
           AV  GA  V+    +      +             G L   A                  
Sbjct: 61  AVASGAVAVLAARPVGVPAVVVDPVAPQHGAGGTAGVLEHDADGSGAAVLAALARLAAAV 120

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A  +    TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R    
Sbjct: 121 AAELVAGGLTIVGITGSSGKTSTKDLIAAVLAPLGEVIAPPGSFNNELGHPWTVLRATES 180

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E+   H G I  L  +  P I  +  +  AHL  F   E IA+ K+E+ + + +
Sbjct: 181 TDYLVLEMSARHPGNIAALARIAPPSIGAVLNVGTAHLGEFGSREAIAATKSELPQAVPQ 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +G + LN DD     +  K+ A  ++   S                   +    +   G+
Sbjct: 241 SGVVILNADDPVVAAMADKTAARVVRVGRSADARTLDVRADGVTLDPLARPAFTLHAGGE 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G H   N L+   +     A +     AL+   P      R + +      
Sbjct: 301 QVPVTLAVHGDHQVSNALVAAAVALECGATLTQVAGALAAAGPV--SRHRMQVSTRSDGV 358

Query: 340 TLIDESYNANPASMKAAISVLSQISPHG--EGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           T+I+++YNANP SM A +  L+ +S       R  AVLG+M E+GE + + H  +  +  
Sbjct: 359 TVINDAYNANPDSMTAGLKALAWMSRQNPEGSRSFAVLGEMAELGEDTITEHDRIGRLAV 418

Query: 398 LYNISHVWLS--GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             ++S + +   G  + A+                    D     ++  L  GDVV+VK+
Sbjct: 419 RLDVSRLVVVGSGRPMSAMLHGAVMEGSWGSEATPVADADAALALLRDELRPGDVVLVKA 478

Query: 452 SNSCGFYRLINLLLEE 467
           SNS G   L + L+ E
Sbjct: 479 SNSAGLGALADALVSE 494


>gi|208778914|ref|ZP_03246260.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
 gi|208744714|gb|EDZ91012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           novicida FTG]
          Length = 452

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 206/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     +++  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQIVCGNIIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S    +++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAVKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    +        TL+D++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
            +     +G+R+  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A  
Sbjct: 344 DEF----DGKRVIAITSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLVD----GDVVVVKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L +       + VK + S     ++  + E
Sbjct: 400 PAQNAKYYESKDELNNDLLKVLNEYKSQNTKLTVKGARSFKMEEVVKFVKE 450


>gi|254432056|ref|ZP_05045759.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197626509|gb|EDY39068.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 428

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/435 (27%), Positives = 189/435 (43%), Gaps = 25/435 (5%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---------GSLSIPVFGVDDVLG 93
           F A+ G  +DGHDF+  A+Q G+  VV+  D +            G     ++ V D + 
Sbjct: 2   FLALVGERFDGHDFLEQAIQAGSAAVVLQGDHLPPASLQSLMALAGERGCGLWAVPDTVL 61

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A  +LA   R      ++A+TGS GKTTT+E++   L+ +    A  G+ NN +GVPLTL
Sbjct: 62  AYQQLAAGWRRGFAGPVVAVTGSAGKTTTRELIRAVLAPLGSVVASRGNENNDLGVPLTL 121

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R+       + E+GM  LGEI  L+   +P +AVIT I  AH+      E IA AK EI
Sbjct: 122 LRLTDADRAAVVEMGMRGLGEIERLSRCAQPDVAVITNIGTAHIGRLGSREAIAQAKCEI 181

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L+  G + +   D   +   A      +  I   G    A+      +  +  S + 
Sbjct: 182 TTSLQPQGVVVIPAGDPLLDAALAAVWQGAVLRIALAGDPGEAEADWVGQEDPAAGSVV- 240

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                  + V     G H A+N+++ L +   L            +              
Sbjct: 241 ----VDGVAVPLPLEGRHHARNLMLALAVARHLGVGP------ERLQQLHVALPGGRSRR 290

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L  G   L+DE+YNA+P ++ A++ +   ++    GRR AVLG M E+G+ S + H  +A
Sbjct: 291 LAVGGIRLLDETYNASPEAVLASLEL---LATQAGGRRYAVLGTMLELGDKSLALHRRVA 347

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 ++  + +          A   +    +    + +     +Q  L  GD V++K+
Sbjct: 348 RRAIELDLDGLLIVDGGAEGEAMAAEAAGMSRLALVPSPEAAAAVLQPWLAPGDTVLLKA 407

Query: 452 SNSCGFYRLINLLLE 466
           S S    RLI LL +
Sbjct: 408 SRSVALERLIPLLQQ 422


>gi|153807458|ref|ZP_01960126.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
 gi|149129820|gb|EDM21032.1| hypothetical protein BACCAC_01738 [Bacteroides caccae ATCC 43185]
          Length = 830

 Score =  195 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/474 (21%), Positives = 194/474 (40%), Gaps = 20/474 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T   + + I    +G   +  ++ +  DSRS++   +  FFA+      G  +I 
Sbjct: 1   MS--YTIESIAECIGARRVGEC-EATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
               +G    VV  +      +       ++    V + L AL KLA   R   K  II 
Sbjct: 58  DLYDRGVRNFVVTEEDFEKFKNGELGKLSTLNFLIVANPLKALQKLAEIHREEFKIPIIG 117

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  ++      SYN+ IGVPL++ ++  + + GIFE G+S +
Sbjct: 118 ITGSNGKTIVKEWLHQLLSPDRRIVRSPRSYNSQIGVPLSVWQLNEEAELGIFEAGISEM 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +           +  
Sbjct: 178 GEMNALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGD 230

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L +   A  + T      S+    +     + +++    V             I +  
Sbjct: 231 NELISNCVAKSMLTAREIAWSRKDIERPLYISRVTKKEDHTVISYRYLDMDNTFCIPFID 290

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             ++   L  ++     +  A +        E    R      +    LI++SYN++ AS
Sbjct: 291 DASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLAS 350

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 351 LDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVRSRGIDKLIGVGAEIS 410

Query: 413 ALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +       ++  ++    + L    +  SL   +V+++K S    F  L   L 
Sbjct: 411 SCTARFDDALERYFFPNTEALLASNLLKSLHS-EVILIKGSRVFNFDLLSEELE 463


>gi|325202773|gb|ADY98227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240149]
          Length = 436

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 127/451 (28%), Positives = 197/451 (43%), Gaps = 22/451 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +   ++   
Sbjct: 3   SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA   R      +  ITGSVGKTT KEML   L          A
Sbjct: 63  ----LKVDDTLAALQTLAKVWRENVNPFVFGITGSVGKTTVKEMLAAVLRRRFGDNAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                          ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAAI VL+++       RI V+GD
Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++  L +   V+VK S       ++  L ++
Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|146342502|ref|YP_001207550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195308|emb|CAL79333.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase,
           D-alanyl-D-alanine-adding enzyme) [Bradyrhizobium sp.
           ORS278]
          Length = 458

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 128/466 (27%), Positives = 191/466 (40%), Gaps = 43/466 (9%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP---------- 49
           M   LWT  +  +A+     G  P+  ++ ++ DSR++ P   F A+ G           
Sbjct: 1   MTKALWTVAEAARALG--LAGDYPETAIDFVTQDSRAVKPGSLFVALSGTPSGGFVSSFA 58

Query: 50  -HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSK 107
              DG +F  +A Q GA  ++V       I  +++P   V D L   L  LA AAR R  
Sbjct: 59  SSRDGWEFAANAEQAGAVAMIV----PHRIEGVTVPQLVVTDTLIDGLWALARAARSRFH 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I +TGS GKT+TKE +     +     A   S+NN  GVPLTL          + E+
Sbjct: 115 GPVIGLTGSAGKTSTKEFIAAYPGAS----ASPSSFNNFWGVPLTLCNADPSASVWVVEM 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GM+  GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G + L  
Sbjct: 171 GMNQKGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRQEKVSIARGLPSGGILVLPA 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D      L A   +          + +      R              +         H 
Sbjct: 231 D------LAAPEWSGKTIRFGGDAEVRELSHTARGESWDVTADIAGCSVNFALTPGAPHR 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +   +A    +    +       +     +      E            G   LID+S+N
Sbjct: 285 LHNALAALASVAAAGLDPALLAPELGEVGIMTGRGVEQ---------TVGDIVLIDDSFN 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NPASM AA+  L        GRRIAV+GDM E+G+ + ++H  +   L+   I  V+  
Sbjct: 336 GNPASMAAALDGLQARPVR--GRRIAVIGDMLELGDEAPAYHAKMVGHLA--GIDGVFCV 391

Query: 408 GFHVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSS 452
           G  +  L +ALP+   + + E    L    + + L  GDVVVVK S
Sbjct: 392 GPLMRHLFEALPQGRRLGWHEDPVTLDPKQVAALLAPGDVVVVKGS 437


>gi|312196218|ref|YP_004016279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
 gi|311227554|gb|ADP80409.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia sp.
           EuI1c]
          Length = 493

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 126/467 (26%), Positives = 201/467 (43%), Gaps = 21/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G   G       V    +DSR + P   F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVAAATGGRLDGGADAATLVTAAVVDSRLVEPGALFVALPGARVDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                 G V      V +   +S+P   V D  GAL  LA   R  +KAT++AITGS GK
Sbjct: 59  ------GAVAAGARAVLAARPVSVPAVLVADPAGALMALAAHVRTLTKATVLAITGSSGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L S+  T A  GS+NN IG+PLTL R+  D ++   E+G   +G I  L 
Sbjct: 113 TTTKDLLADLLGSLGPTLAPPGSFNNEIGLPLTLLRLEPDTEYVALEMGARGIGHIAALC 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + RP + V+  +  AH+  ++      +           T  + LN DD     ++ + 
Sbjct: 173 QVARPQVGVVINVGSAHVGEYADGRAGIAQAKG-ELAEAATDVVVLNADDPLVAAMRPR- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + + +FG + +AD +  +    +   +  ++    +   V    +G H   N L 
Sbjct: 231 --AAGRRVVTFGVAADADVRAERIALDAAGRASFDLVTDAERHRVALALVGEHQVGNALA 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  +      A  AL+   P      R           +++++YNANP SM+AA+ 
Sbjct: 289 AAAAALAVGMTPTAAAAALAAARP--RSRWRMEVTTAPSGLVVVNDAYNANPESMRAALR 346

Query: 359 VLSQISPHGE---GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLAL 414
            L  +   G     R  AVLG M E+G  +++ H +L    +   +    + G       
Sbjct: 347 ALVGLGADGGPDRRRTWAVLGPMGELGTAAEAEHAELGRFAARLGVDRTVVIGEAARPLA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCGFYRL 460
           + A      V +   +D     + ++ +   DVV+VK+S + G  R+
Sbjct: 407 QAAAGAGARVDWVADVDAAAELLATAALGDADVVLVKASRAAGLERV 453


>gi|253563777|ref|ZP_04841234.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|265765516|ref|ZP_06093791.1| alanine racemase [Bacteroides sp. 2_1_16]
 gi|251947553|gb|EES87835.1| alanine racemase [Bacteroides sp. 3_2_5]
 gi|263254900|gb|EEZ26334.1| alanine racemase [Bacteroides sp. 2_1_16]
          Length = 848

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV          +++ +    +       V + L AL KLA   R   +  ++ 
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S  +       + + ++  + + +  +            I    
Sbjct: 256 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +        I  ++      L    +   L   +++++K S + GF  +   L 
Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 482


>gi|328676588|gb|AEB27458.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase [Francisella
           cf. novicida Fx1]
          Length = 453

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 205/472 (43%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPITILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S    +++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSFAVKIRVFDQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    +        TL+D++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKL---NDKLTLVDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
            + +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|254373946|ref|ZP_04989428.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
 gi|151571666|gb|EDN37320.1| hypothetical protein FTDG_00102 [Francisella novicida GA99-3548]
          Length = 453

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/472 (23%), Positives = 206/472 (43%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----DLDIPQIVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA++T +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMVTNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S    +++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
            + +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|53712185|ref|YP_098177.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis YCH46]
 gi|52215050|dbj|BAD47643.1| alanine racemase [Bacteroides fragilis YCH46]
          Length = 848

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 20  YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 78

Query: 63  KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV          +++ +    +       V + L AL KLA   R   +  ++ 
Sbjct: 79  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 138

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 139 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 198

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 199 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 255

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S  +       + + ++  + + +  +            I    
Sbjct: 256 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 314

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 315 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 371

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 372 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 431

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +        I  ++      L    +   L   +++++K S + GF  +   L 
Sbjct: 432 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 482


>gi|60680368|ref|YP_210512.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis NCTC 9343]
 gi|60491802|emb|CAH06560.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis NCTC 9343]
 gi|301161901|emb|CBW21445.1| putative alanine racemase and
           UDP-N-acetylmuramoylalanyl-D-glutamyl,
           6-diaminopimelate-D-alanyl-D-alanyl ligase fusion
           protein [Bacteroides fragilis 638R]
          Length = 840

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/474 (22%), Positives = 198/474 (41%), Gaps = 24/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++ I    +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKIGARRLGNKP-AAIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV          +++ +    +       V + L AL KLA   R   +  ++ 
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLAEQHRGSFQIPVVG 130

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S  +       + + ++  + + +  +            I    
Sbjct: 248 SNCVGKSMLTAREIAWSM-RDIERPLYISRVEKKEDHTVISYRYLEMDNTFCIPFIDDAS 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +        I  ++      L    +   L   +++++K S + GF  +   L 
Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLR-NEIILIKGSRNFGFDLVSEELE 474


>gi|318041247|ref|ZP_07973203.1| cytoplasmic peptidoglycan synthetase [Synechococcus sp. CB0101]
          Length = 456

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/447 (25%), Positives = 180/447 (40%), Gaps = 18/447 (4%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              + G+ P   V  I  DSR +   E F  + G  +DGH F+  A   G    VV    
Sbjct: 15  GAQAAGVDPAAPVGPICTDSRQLQGGELFVPLVGERFDGHGFLGQAAALGVQAAVVQRGR 74

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
              +    +  + VDD L A  +LA+  R +  A ++A+TGS GKTTT+E++  AL  + 
Sbjct: 75  AGDVPP-GLLHWLVDDTLDAYQQLALLHRRQLVAPVVAVTGSAGKTTTRELIRAALGPLG 133

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              A  G+ NN IGVPLTL +   +    + E+GM  LGEI  L+   +P +AVIT I  
Sbjct: 134 PVMASSGNENNDIGVPLTLLKAGTEHRAVVVEMGMRGLGEIDRLSRTAQPDVAVITNIGT 193

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AH+      E IA+AK EI   L+  G + +   D   E       +  ++ +   G   
Sbjct: 194 AHIGRLGSREAIATAKCEITSQLKPDGLLVIPAGDPLLEQAIQAVWSGRVQRVALAG--- 250

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D  + +     E       L  +   +     G H A+N+L+ + +   L   +    
Sbjct: 251 --DPGVDQADLLGELDETNDLLSVRGERIRLPLAGRHNARNLLLAVAVAQELGVGLPALA 308

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                               N+          +    +   A+    ++     GRR AV
Sbjct: 309 DLDVEVPG----------GRNRRLQLGGLRVLDETYNASPEAVLAALELLARQPGRRFAV 358

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDG 432
           LG M E+GE S + H  +AE  +   +  + +      A   A       ++        
Sbjct: 359 LGSMLELGEQSVALHRQVAERAAALGLDGLVVVAGGAEAQAMAAAAQALPNLAVVAEPAE 418

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               ++  L  GDV+++K+S      R
Sbjct: 419 AAEPLKQWLASGDVLLLKASRGVALER 445


>gi|56707569|ref|YP_169465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670040|ref|YP_666597.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456639|ref|ZP_03665112.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370091|ref|ZP_04986097.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874389|ref|ZP_05247099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604061|emb|CAG45055.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320373|emb|CAL08438.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568335|gb|EDN33989.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840388|gb|EET18824.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158726|gb|ADA78117.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 452

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L         + VK + S     ++  + E
Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450


>gi|269118795|ref|YP_003306972.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
 gi|268612673|gb|ACZ07041.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate/D-alanyl-D-alanyl ligase [Sebaldella
           termitidis ATCC 33386]
          Length = 435

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/439 (25%), Positives = 193/439 (43%), Gaps = 28/439 (6%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +N + I+S  +   + F AI+G    G+ +I  A +KGA  V+ +     +    +  
Sbjct: 23  LEINNVLINSGEVRENDVFIAIRG----GNSYIQEAAEKGA-YVIYDDKTKKTPYPKA-- 75

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            F V+D +  L K A   R      II ITGS GKTT K+++   LS+  K     G+ N
Sbjct: 76  -FLVNDSIKFLQKFAENWRNILDLKIIGITGSNGKTTVKDIIYQLLSTKYKGKKTEGNLN 134

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+P++L R     DF + E+GMS  GEI  L  + +P   +IT I  +HL      E
Sbjct: 135 NHIGLPVSLLRAENSDDFLVLEMGMSGFGEIDLLAAIAKPDYGIITNIGDSHLEFLGSRE 194

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +  AK+EI + ++    +FLN DD F   L             S      AD++ +   
Sbjct: 195 NVFKAKSEIIKHVK--AKMFLNGDDPFLGDL--------PGIKVSADGKSTADYRAKNIN 244

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              + +  ++      + +  + IG H   N+L  + I        +             
Sbjct: 245 LSGDGTKFDLNEG---LTLETNLIGEHNILNLLFGIAISEEFGIKTEDLADEFKNIKLTA 301

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R ++       G    I+++YNA+P SM+ AI   S I  + +  ++ +LGDM E+GE 
Sbjct: 302 MRFQKIE----NGNIIYINDAYNASPISMEKAILTFSDI--YNDRYKVVILGDMLELGEK 355

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              FH +L ++L     + + L G  +  L + +   ++V + +    +   ++    + 
Sbjct: 356 DAEFHEELEKILRNTKQNEILLYGSLMKNLYEKIKD-MNVFHFDEKSFIREKLRGHNSEK 414

Query: 445 DVVVVKSSNSCGFYRLINL 463
             V++K S       +I  
Sbjct: 415 LAVLLKGSRGMRLEEIIEE 433


>gi|301336322|ref|ZP_07224524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum MopnTet14]
          Length = 450

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 107/437 (24%), Positives = 170/437 (38%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV  D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDIFFALPGNRTSGHLFLKQAAQSGAVAAVVARDYRG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           F V D   +L +         +  +I ITGSVGKTTTK      LSS  K +A   SYN+
Sbjct: 82  FHVADPRESLREAGRTQGALFQGEVIGITGSVGKTTTKSFTQQLLSSFYKVFASPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S  G ++ L  ++ P I VIT I   H  NF     
Sbjct: 142 QLTLPLSILMADGDEDFLLLEMGVSEPGNMKNLLEVIEPTIGVITHIDVQHAMNFLD--- 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                  I E                                       N          
Sbjct: 199 --KGAKGIVEEKSLLLERCGLQLLPKDSSWFPFFMKKNSTAEQFSFSMNNETSDFYYRAI 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            S+   +        + VV      +M   + + L          +  +  L    P   
Sbjct: 257 HSDGVLISAPDGDIELPVVFPYSPAYMNFLVAVAL------AWLTNVPMDRLEQVSPSLI 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P SM AA+  +    P   G+R+ +LG M E+G+ S
Sbjct: 311 LPSMRFEQQEYNGIRVINDAYNASPDSMLAALDAVPV--PPEGGKRVFILGHMAELGKYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
              H+ +A          V   G     ++D +   +  + +  +++ +   ++S +  G
Sbjct: 369 NECHVAVARKAV-TKAHVVVFIGEKWFPVRDVVRDANCQIEFYGSVNEIMHVVKSLVRQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|24251251|gb|AAN46171.1| MurF [Synechococcus elongatus PCC 7942]
          Length = 455

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 116/475 (24%), Positives = 185/475 (38%), Gaps = 24/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   ++   +   +      +G         ++ DSR I P + F A++G  +DGHDF+ 
Sbjct: 1   MATFFSPFQIQLGLGAIPLQVGEACDRPARSLTTDSRQIQPGDIFLALRGDRFDGHDFVA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +V+ D        +  +  VD+ L A  ++A   R R    +I ITGSVG
Sbjct: 61  QALADGAIAAIVDRDYQPPSDLAAGHLLQVDNTLWAYQEVARLWRQRCSLPLIGITGSVG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRF 177
           KTTTKE++   L+          +YNN IGVP T+ ++  D  +  + E+GM   G+I  
Sbjct: 121 KTTTKELIAAMLAVRGPVLKTEANYNNEIGVPKTVLQIDPDHHWAAVLEMGMRGRGQIAE 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P+IAVIT +  AH+      + IA AK E+   L  TG   LN D+     L A
Sbjct: 181 LARIAQPNIAVITNVGTAHIGLLGSEQAIAEAKCELLAQLSGTGLAILNADNH---RLIA 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +  L +    ++G                 Q      L  +         G H A N L
Sbjct: 238 TAQRLNLPRCRTYGLQNGD---------LQGQLIDLETLVVEGQRFRLPLPGAHNALNFL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I   L  D +                 R R         L+DE+YNA   SM AA+
Sbjct: 289 AGLAIAQELGLDWEAFR-----DLSVTLPQGRARRIELSPDIVLLDETYNAGLESMLAAL 343

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKD 416
                 +           G    +G   ++             +  + +       A   
Sbjct: 344 QAFGGYAGPTPDCSA---GHDEGIGRFQRNLPSPSWRKSGCLGLDRLLIYADPTEAAAMQ 400

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           A   +I        + L   ++ S+  GD ++ K+S S    R++   +  + A+
Sbjct: 401 AGASAIATQIFTNAEDLLSELRQSVQTGDRLLFKASRSVALDRILADFVAVYSAV 455


>gi|270284924|ref|ZP_06194318.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF
           [Chlamydia muridarum Nigg]
          Length = 450

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 168/437 (38%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D         + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG--PDYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LS   K +A   SYN+
Sbjct: 82  LHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF     
Sbjct: 142 QLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVD--- 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                  I E           +                           N          
Sbjct: 199 --KGAQGIAEEKSLLLERCGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            SE     +      +E+           N ++ + +  +    +D   +A         
Sbjct: 257 HSEGVL--ISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSM 314

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++           +I+++YNA+P +M AA+  +    P   G+ + +LG M E+G  S
Sbjct: 315 RFEQQEHNG----IRIINDAYNASPDAMLAALDAVPI--PSEGGKTVFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
              HI +A          V+  G     +++ +   +  + +  ++  +   ++S +  G
Sbjct: 369 DECHIAVARKAV-TKAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|15834757|ref|NP_296516.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
 gi|7190174|gb|AAF39015.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase MurF,
           putative [Chlamydia muridarum Nigg]
          Length = 452

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/437 (23%), Positives = 168/437 (38%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D         + +
Sbjct: 26  KVTGVAIDSRLVLPGDVFFALPGNRTTGHLFLKQAAQSGAVAAVVASDYRG--PDYGLQL 83

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LS   K +A   SYN+
Sbjct: 84  LHVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKSFTQQLLSPFYKVFASPKSYNS 143

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  NF     
Sbjct: 144 QLTLPLSILTADGDEDFLVLEMGVSEPNNMKDLLDVIEPSIGVITHIDVQHAMNFVD--- 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                  I E           +                           N          
Sbjct: 201 --KGAQGIAEEKSLLLERCGIHLLPRDSSWFNFFMKKNAAADQFSFSMNNETADFYYRAI 258

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            SE     +      +E+           N ++ + +  +    +D   +A         
Sbjct: 259 HSEGVL--ISAPDGDIELPVVFPYTPAYMNFIIAVALAWLTNVPMDRLEQASQSLFLPSM 316

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R ++           +I+++YNA+P +M AA+  +    P   G+ + +LG M E+G  S
Sbjct: 317 RFEQQEHNG----IRIINDAYNASPDAMLAALDAVPI--PSEGGKTVFILGHMAELGRYS 370

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
              HI +A          V+  G     +++ +   +  + +  ++  +   ++S +  G
Sbjct: 371 DECHIAVARKAV-TKAHVVFFVGEKWSPVREVVSDANCQIEFYGSVSEIMHVVKSLVRRG 429

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 430 DVVLLKGSRSLELETLL 446


>gi|298241040|ref|ZP_06964847.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554094|gb|EFH87958.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 474

 Score =  193 bits (491), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 200/483 (41%), Gaps = 31/483 (6%)

Query: 4   LWTFHDLLQ----AIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           ++T +D++Q     I   S     P         DSR I P + F A KG + DGH FI 
Sbjct: 1   MFTLNDIVQSNTDQIHIQSSTTPDPALVFRSAHHDSRLITPGDLFIARKGTNSDGHHFIP 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117
            A + GA   + +T   A+          V DVL AL+  A A   R K T+ I ITGS 
Sbjct: 61  AAARAGALAALCSTP--ANDVPPDFLQIIVPDVLTALHATARARTQRQKDTVRIGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK+ +   LS    T     SYN+ +G P+TL  +     + + E+G   +GE+ +
Sbjct: 119 GKTSTKDAVAAVLSHKAPTLKTYASYNHELGYPITLLHLEPQHRYAVLEMGAQCVGELTW 178

Query: 178 LTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L + +  PH ++ITT+  AHL  F   E +A AK+E+ + L   G   LNYDD     + 
Sbjct: 179 LCNSIASPHWSIITTVGAAHLEYFGTQERVAIAKSELVQVLTPDGFAILNYDDELVRAMA 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AK+ A  +      G +  A             +      Q           G H     
Sbjct: 239 AKTQARILYYGTGEGATVRASNIGGDTLFGHSFTLHYHDQQQPVQ---LRLPGEHGVTIA 295

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L            +D    AL    P  GR             TLID+SYNAN  S+ A 
Sbjct: 296 LAAAATGCAAEMSLDDIASALEDLSPAPGR---CEIKPGPNNSTLIDDSYNANRQSIIAI 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412
            S +   S    G+R A+LGD+ ++G  +++ H      L+   + ++   G        
Sbjct: 353 TSAMHNTSQAPNGKRWAILGDIFQLGTYARAEHSTCGSSLAGL-VDYLIAIGDQARFYVE 411

Query: 413 -ALKDALPRSIHVHYSETMD----------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            A+   +P     ++S  ++               ++  +  GD+V++K S       ++
Sbjct: 412 GAIASGMPEKNAYYFSADVNNSAELEAAKRAAADLLKHEVRPGDLVLLKGSRGMRMETML 471

Query: 462 NLL 464
            +L
Sbjct: 472 AML 474


>gi|332828347|gb|EGK01056.1| hypothetical protein HMPREF9455_02578 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 823

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 103/467 (22%), Positives = 194/467 (41%), Gaps = 17/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++ H + + +    +  +    ++ +  DSR +    +  FFA+   + DGH +I    +
Sbjct: 3   YSIHKIAKILDA-IVSDLNDADISILLTDSRQVFYPAETLFFALSTKNNDGHKYINELYE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+  +             V + L AL ++A   R +    +I ITGS GKT  
Sbjct: 62  LGVRNFVVSQILPDWENYNDANFLVVTNTLAALQRIAAYHRNQFDIPVIGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L           SYN+ IGVPL++ +M      GIFE G+S   E+  L  ++
Sbjct: 122 KEWLYQILHQDFNITHSPRSYNSQIGVPLSVWQMNDHTQLGIFEAGISQPEEMSKLEAII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I ++T I  AH   F  +++    K E+F   +       N        +   SH  
Sbjct: 182 RPTIGILTNIGQAHQEGFKSMKQKCLEKLELFINCDVIICEEENELIDECMEIACLSHKR 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +     KS      + K ++  + + +   + G + ++V         ++ +  L  
Sbjct: 242 LTWSRRGSSKSP---LYIMKIEKQEKSTTIHYSVLGMASKLVIPFSDDASIEDAIHVLAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    + +S   P   R    +   N    TLI++SYN++  S+  A+  L+Q
Sbjct: 299 AFYLHMSLPDINERMSTLEPVAMRLDVRQGKNN---STLINDSYNSDINSLNIALDFLAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   E +++ ++ D+ + G + +  +   A ++    I  +   G  + A K+    + 
Sbjct: 356 RATTSEQKKVLIISDIPQSGLIPRELYYLAANLVLNKKIDLLIGIGQEISAHKEMFKDTE 415

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  T +    FI S++        +++K + S  F  + N LLE
Sbjct: 416 SL-FFNTTED---FIHSNIWHDFHDMFILLKGARSFSFESI-NKLLE 457


>gi|134302495|ref|YP_001122465.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|134050272|gb|ABO47343.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 452

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/471 (23%), Positives = 210/471 (44%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   +K +   G+ NN++GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGE-RKVHFTKGNLNNYLGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L         + VK + S     ++  + E
Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450


>gi|262340887|ref|YP_003283742.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272224|gb|ACY40132.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 426

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 122/440 (27%), Positives = 195/440 (44%), Gaps = 20/440 (4%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +GI  +S+ +     F A+KG ++DG+ F   A+  GA + +V+   V S       +  
Sbjct: 4   SGIETNSKKVKKGSIFIALKGKNFDGNQFAHEAISNGAMIAIVDDKRVFSCR----KIIY 59

Query: 88  VDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNN 145
           VDD L  L KLA+  R +     IIAITGS GKTTTKE+    LS   +  +    + NN
Sbjct: 60  VDDSLHFLQKLAMYHRYQLRHIPIIAITGSNGKTTTKELTKTILSRKYEKVHFTKNNLNN 119

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           HIG+PLT+  MP++    + E+G +H  EI  +  +++P    IT    AHL  F  IE 
Sbjct: 120 HIGIPLTILSMPINTQISVIEIGANHEKEIDKMCSIIKPDYGYITNFGKAHLEGFKSIEG 179

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I   K E++  L+K   +     D   +L K+      I +     KS      L     
Sbjct: 180 IIRGKLELYNFLKKNKKVVFVNGDDPIQLDKSIGMKRYIFSEKEDKKSNVKIKYLWNQVG 239

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
           C  +S +       + ++    IG +   N+   + I       ++   KA+  + PK  
Sbjct: 240 CDLKSILY----VDNTKISSSLIGNYNLYNIASAISIGKYFKISLEKIKKAVEEYIPKNH 295

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      N+    +I + YNANP SM   I  L+  + + +G +IA+LGDM E+G  S
Sbjct: 296 RSQIM----NKKNTKIIIDCYNANPTSM---IKALTFFNNNIKGNKIAILGDMLELGFYS 348

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDG 444
              H  +   +   NI+  +L G     +   L  S  +           + +       
Sbjct: 349 NHEHEKIIFFIEKSNINTTFLIGDIFFNI--NLKTSQRIKKFINKKKFIEWFKKHFTQKM 406

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           D V++K S       L++L+
Sbjct: 407 DYVLIKGSRKGTLESLVDLI 426


>gi|167626533|ref|YP_001677033.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596534|gb|ABZ86532.1| D-alanyl-D-alanine-adding enzyme [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 452

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 105/471 (22%), Positives = 192/471 (40%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L        IG      +  +SI+S  I     F AI   + DGHDFI  A
Sbjct: 1   MIK--SLKQLATQAGLEYIG--EDVSIQTVSINSNEIKQDALFVAIV-ANRDGHDFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         ++IP     + +  L  LA   R   K  II++TGS GKT
Sbjct: 56  LSYGAKALLVSKKQ-----DINIPQVVCSNTIKGLRALAKEYRKSLKMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T KEM+   L   K  +      N  +GVP+T+   P DVDF + E G S  GEI+    
Sbjct: 111 TVKEMIVTLLGGKKVHFTQGNFNNY-LGVPMTVLETPQDVDFAVIETGTSVAGEIKAAAE 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P++A+IT +  +HL N   ++ +   K E+ + L K G   +N DD        K  
Sbjct: 170 IIQPNVAMITNVGASHLENLKTLDGVMIEKGELLKALPKDGFCIVNLDDERIPAYADKLD 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    S   +       +   +  +        +               +   + ++
Sbjct: 230 CNKITCSMSNQDADIIILDYQVIPELYDVKIRIFDKEYSYQLPNIGKHNLSNSMLAIASV 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   D     + +  +  +    K           TL+D++YNA+  +++AAI+ L
Sbjct: 290 VAARLEPNDFLQNTQNIKNYKGRFSTEKLNDKL------TLVDDTYNASAGAVQAAIADL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G+++  +  M E+G+  Q++H  + + L+   + +++L G  +++       
Sbjct: 344 AEF----DGKKVIAITSMRELGDEGQNYHRKMGQWLNKAGLDNIFLFGEKNLIKFALEEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYRLINLLLE 466
              +V Y +    L   +   L         + VK + S     ++  + E
Sbjct: 400 EGSNVKYYDDKQQLNNDLLKVLDGYKSQNTKLTVKGARSFKMEEVVKFVKE 450


>gi|187931373|ref|YP_001891357.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712282|gb|ACD30579.1| d-alanyl-d-alanine-adding enzyme [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 452

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGTLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLLNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L         + VK + S     ++  + E
Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKE 450


>gi|183602420|ref|ZP_02963786.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683265|ref|YP_002469648.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191226|ref|YP_002968620.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196632|ref|YP_002970187.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218339|gb|EDT88984.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620915|gb|ACL29072.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249618|gb|ACS46558.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251186|gb|ACS48125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177342|gb|ADC84588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794219|gb|ADG33754.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 496

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 134/490 (27%), Positives = 198/490 (40%), Gaps = 38/490 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            T   ++QA+ G +               +  DSR +     F AI G H DGHDF+  A
Sbjct: 4   MTLAQMVQAVHGSAEHCDCDDLETVTATSVVTDSRQVVDGALFVAIAGEHVDGHDFVDAA 63

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAITG 115
            ++GA   +V  +    I S  I    V D + AL  LA A     KA     TII ITG
Sbjct: 64  ARQGAAAALVERE----IKSAPIAQIVVPDTVAALGALAKANLEARKAIDEPFTIIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTTK++L   LS+  +T A  GS+NN IG+PLT  ++     + + E+G +H+GEI
Sbjct: 120 SVGKTTTKDLLHALLSTQGETVAPKGSFNNEIGLPLTALKVGERTRYLVAEMGANHIGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT +  P IAV+  +  AHL  F  +E IA AK+EI  G        LN DD     +
Sbjct: 180 ARLTKIAPPDIAVVLKVGVAHLGEFGSVERIAQAKSEIVRGEAPNAITVLNADDERVAAM 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYH 291
              +            ++ + D  +       +     V      QG    V     G H
Sbjct: 240 SGIAKGDVFWFGIDKAQAHDIDGYMAADDIALDDLGHPVFELVSSQGVEQRVSLGIGGRH 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANP 350
              N L    +  +L   ++   + L+                 +   FTLID+S+NANP
Sbjct: 300 NVMNALAAASVAKLLGMPLERIAQVLADTRRISPHRMAVSEVERDGARFTLIDDSFNANP 359

Query: 351 ASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            SM+A I  L       + +    AVLG M E+G    + H  +        +  +   G
Sbjct: 360 DSMRAGIDGLMAWRSQEDQQPYRVAVLGSMLELGSDEHNLHRTIGAYALDGGVDALICVG 419

Query: 409 --------FHVLALKDALPRSI------HVHYSET---MDGLFLFIQSSLVDGDVVVVKS 451
                        + D    +        V   +T    D L   + +      +V++K 
Sbjct: 420 GGDDASLNALAQDIADGGTEAKDADDMRPVRAVKTTQQADDLIRALNAE-HPDMLVLLKG 478

Query: 452 SNSCGFYRLI 461
           S++ G   L 
Sbjct: 479 SHASGLSALA 488


>gi|15837396|ref|NP_298084.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
 gi|9105690|gb|AAF83604.1|AE003919_15 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa 9a5c]
          Length = 468

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 184/469 (39%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA 
Sbjct: 6   LSLIAHWTGGYLHG--EDVRVRAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML
Sbjct: 64  GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                  A  S    YA  G+ NN IG+PL +   P D DF ++E+G   LG+I +LT +
Sbjct: 120 VSILEHAAAQSSTVVYANSGNRNNEIGLPLAVIAAPDDADFAVYEMGAGKLGDIGYLTDI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A++  IAPAHL     +  +A  K EI     + G   +   D  F L   +   
Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    AD      +   +     +      + V     G H   N L    
Sbjct: 239 PAGCAVLRFGLQATADITAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +      L +     GR   +          LID+SYNANP S+  AI  L+
Sbjct: 299 MALVAGIPLPQIAAGLGLARSVPGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
             +    G    VLGDM E+G    + H           ++ ++  G             
Sbjct: 356 TAA----GPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411

Query: 422 IHVHYSETMDGLFLFIQSSLV--DGDV---VVVKSSNSCGFYRLINLLL 465
            HV      D L   +   L      V   V+VK S      +++  LL
Sbjct: 412 GHV--FADHDALAAVLWDDLRHVPDGVLPRVLVKGSRGSAMDKIVGALL 458


>gi|269795578|ref|YP_003315033.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097763|gb|ACZ22199.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 464

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 210/475 (44%), Gaps = 23/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++     G          V+G ++ DSR ++    F A+ G   DGHD    
Sbjct: 1   MIDL-TAAEVADLTGGTL-AAPHTTRVHGPTVVDSRKVSAGALFVALVGESSDGHDHAAG 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS----KATIIAITG 115
           AV  GA LV+ + ++        +P   VDDV  AL  +A     R        + A+TG
Sbjct: 59  AVADGAALVLASRELD------GLPCVVVDDVTRALGLVAAEHLRRLRASGPLQVAAVTG 112

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTTK++L   LS    T     S+NN IG+PLT+     +  + + E+G S  G++
Sbjct: 113 SVGKTTTKDLLGHVLSESGPTVMPRASFNNEIGLPLTVLEAGPETRYLVLEMGASAPGDL 172

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT +  P ++++  +  AHL  F G++ +A AK+EI  GL   G   LN DD     +
Sbjct: 173 TYLTGIAPPDVSIVLAVGAAHLGGFGGLDGVARAKSEIVTGLRPEGVAVLNADDHRVVAM 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +     L    + +FG  ++A  +  +             + G+    +   +       
Sbjct: 233 RD----LAPSRVVTFGTVRDAGVRAHRVSVDRLGRVSCQVVVGERTADLSLRLVGEHHLT 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +     ++          AL V         R          T+ID+SYNANP SM+A
Sbjct: 289 NALAALTAAVELGVDLDTAAAL-VSSVDAASPHRMAVTERPDGVTVIDDSYNANPDSMRA 347

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+  L+ ++   + R +AVLG+M E+G  S+  H ++  ++   NI  + + G     L 
Sbjct: 348 ALKALAVVAG-RDRRSVAVLGEMLELGPDSRDQHDEIGRLVVRLNIKLLVVVGAGASGLA 406

Query: 416 DALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           D   +       V   E +     F+   L  GDVV+VKSSN  G +RL + L  
Sbjct: 407 DGATQEGSWGEEVVEVEDVPAAERFLAEELRSGDVVLVKSSNGSGLWRLGDALTA 461


>gi|325128832|gb|EGC51691.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis N1568]
          Length = 452

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 131/472 (27%), Positives = 205/472 (43%), Gaps = 25/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL   + + QA+            V+ I  DSR     + FFA+ G  +D HDF+   
Sbjct: 1   MKPL-DLNFICQAL--KLPMPSESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDV 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  VVV+ +   ++         VDD L AL  LA A R      +  ITGS GKT
Sbjct: 58  LAAGAAAVVVSREDCVAMDGA----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKT 113

Query: 121 TTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEML   L          A  G++NNHIG+PLTL ++     + + E+GM+H GE+  
Sbjct: 114 TVKEMLAAVLRRRFGDDAVLATAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           LT + +P+ A++     AH+   F G+ +IA AK+EI++GL   G   +  +D+   + K
Sbjct: 174 LTQIAKPNAALVNNAMRAHVGCGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFK 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +  L  +T        + D               ++    +   VV    G H   N 
Sbjct: 234 TATLNLNTRTFG----IDSGDVHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNA 289

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +       ++   + L  F   +GR             TLID++YNANP SMKAA
Sbjct: 290 AAAAALALAAGLSLNDVAEGLKGFSNIKGRLNVKAGIKG---ATLIDDTYNANPDSMKAA 346

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           I VL+++       RI V+GDM E+GE  + + H ++        I   +  G + +   
Sbjct: 347 IDVLARMPA----PRIFVMGDMGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAA 402

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +         +    D L   ++  L +   V+VK S       ++  L ++
Sbjct: 403 EKF--GADGLWFAAKDPLIQVLRHDLPERATVLVKGSRFMQMEEVVEALEDK 452


>gi|325198902|gb|ADY94358.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis G2136]
          Length = 436

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 197/451 (43%), Gaps = 22/451 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +   ++   
Sbjct: 3   SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVDDTLTALQMLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDNAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNAMRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                          ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VHAENIVLKPLSCEFDLVCGNECAAVVLPVPGRHNVHNAAAAAALSLAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAA+ VL+++       RI V+GD
Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAVDVLARMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++  L +   V+VK S       ++  L ++
Sbjct: 406 LRHDLPERATVLVKGSRFMEMEEVVEALEDK 436


>gi|255007708|ref|ZP_05279834.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides fragilis 3_1_12]
          Length = 831

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 106/478 (22%), Positives = 198/478 (41%), Gaps = 26/478 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M+  +T   +++      +G  P   ++ +  DSRS+    +  FFAI     +G  +I 
Sbjct: 1   MS--YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIP 57

Query: 59  HAVQKGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
              ++G    VV          +++ +    +       V + L AL KL+   R   + 
Sbjct: 58  DLYERGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQI 117

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G
Sbjct: 118 PVIGITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAG 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D
Sbjct: 178 ISEMGEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGD 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +        KS     +  +S  K       + + ++  + + +  +            I
Sbjct: 235 NEMISNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFI 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N L  L     L    D   + ++   P      R      +    LI++SYN+
Sbjct: 294 DDASIENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNS 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G
Sbjct: 351 DLASLDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVG 410

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             + +        I  ++      L    +   L   +++++K S +  F  +   L 
Sbjct: 411 AEISSCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEELE 465


>gi|256419275|ref|YP_003119928.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
 gi|256034183|gb|ACU57727.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Chitinophaga pinensis
           DSM 2588]
          Length = 438

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 114/433 (26%), Positives = 201/433 (46%), Gaps = 22/433 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  D+R +   + FFA+KGP+++G+ +   A++KGA   VV+ +   +     +     
Sbjct: 27  SVQTDTRQLKAGDIFFALKGPNFNGNTYAAAALEKGAVFAVVDEEAYYTQPDKMM---LT 83

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +D L  L +LA+  R       +AITG+ GKTTTKE+++  L+S  KT A  G+ NNHIG
Sbjct: 84  NDALETLQQLALRHRQSLNIPFLAITGTNGKTTTKELVSTVLASAFKTTATAGNLNNHIG 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPLT+ R+P D +  + E+G +H  EI     +  P   +IT I  AHL  F   E +  
Sbjct: 144 VPLTILRIPADAEMAVIEMGANHEHEIEAYCKVALPTHGIITNIGKAHLEGFGSPEGVRR 203

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK E+++ L          ++  + +      + GI+T+ ++G++               
Sbjct: 204 AKGELYDFLRNNKGTVFVCNEYPYLV----DMSKGIQTVITYGEAAADYTGQPLADSALL 259

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +        ++      G +   N++  + +        +    A+S + P   R +
Sbjct: 260 SVKVTGHEGIGQIDSQLV--GAYNFPNIMAAVAVGLHFGVPAEKIQHAISSYVPSNNRSQ 317

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +   N    T+I ++YNANP+SMKAAI   + I+   +   + +LG M E+G+ S + 
Sbjct: 318 VMKQGSN----TIIMDAYNANPSSMKAAIDNFAGITAEKK---VLLLGGMMELGDDSVAE 370

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H  L ++L   +   V L G       D +  +    Y E      +++Q        ++
Sbjct: 371 HQALVDLLQRTHWHAVVLVG------GDFIKTNHPYIYQENAAAAAIWLQQQQFTDTYLL 424

Query: 449 VKSSNSCGFYRLI 461
           +K S S G  ++I
Sbjct: 425 IKGSRSMGMEKVI 437


>gi|57339536|gb|AAW49755.1| hypothetical protein FTT0422 [synthetic construct]
          Length = 487

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 207/475 (43%), Gaps = 27/475 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 27  MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 81

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 82  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 136

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 137 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 196 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 256 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 313 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 369

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A  
Sbjct: 370 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 425

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE-FP 469
            + +  Y E+ D L   +   L         + VK + S     ++  + E  +P
Sbjct: 426 SNQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVKFVKENLYP 480


>gi|317503759|ref|ZP_07961772.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
 gi|315665139|gb|EFV04793.1| Mur ligase domain protein/alanine racemase [Prevotella salivae DSM
           15606]
          Length = 825

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 184/471 (39%), Gaps = 15/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      +  I  DSRS+    +  FFA+K    DGH +IL
Sbjct: 1   MI--YTIEKVTTLIGARRFG-STDAKIGFILTDSRSLCFPEETLFFALKSGRNDGHRYIL 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV       +          V D L +L +LA   R      I+ ITGS 
Sbjct: 58  ELYHRGVRNFVVTEVPANYASDYPQANFLKVVDSLESLQRLAERHRDEFNIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ +GVPL++  +      G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWLNQLLSDDLFVTRSPRSYNSQVGVPLSVWLLNEHSQVGVFEAGISQPGEMLV 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P IAV+T +  AH  NF   E     K  +F        +  N DDS       
Sbjct: 178 LRDIIQPTIAVLTNLGDAHQENFVSREAKCKEKLVLFH---DAKIVVYNGDDSLISDCVN 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                  + +Y      NA F ++  ++ +  + +    +G         I      N  
Sbjct: 235 ALEDFRGERLYWSCSDHNAPFFVKSIEKKATATTITYIYKGIESWYSLPFIDDASITNSF 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L    D   + +    P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 ACAAVALTLGVSKDALDERMLQLEPI---AMRLEVKQGQHGCTLINDSYNSDINSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   R   +L D+ + G  ++  + ++ ++     I      G  + +    
Sbjct: 352 DFMNRRPDHQGRRHTLILSDIYQSGMTTEELYKEVGKLCQQRGIEKFIGVGKELQS-HAG 410

Query: 418 LPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           L       + E ++ L    +   L   +V+++K +   GF +L  LL+++
Sbjct: 411 LITIKDKFFFENVENLIESDVFKQLH-DEVILIKGARRFGFDQLTELLVQK 460


>gi|87124205|ref|ZP_01080054.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
 gi|86167777|gb|EAQ69035.1| Cytoplasmic peptidoglycan synthetases, N-terminal [Synechococcus
           sp. RS9917]
          Length = 460

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 109/477 (22%), Positives = 184/477 (38%), Gaps = 38/477 (7%)

Query: 4   LWTFHDLLQAIQ---GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + T   L++      G     +    +  +  DSR +     F  + G  +DGH F    
Sbjct: 1   MLTLRQLIEIWGDPVGLQHPDLLDQPLGPVCTDSRQLVAGAFFVPLVGERFDGHRF---- 56

Query: 61  VQKGAGLVVVNTDMVA-----------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                   +V                       +  + V+D L A   LA A R +    
Sbjct: 57  --------LVEAAARPAQAAVVATAWSDPVPPGLLHWRVNDTLEAYQMLARAHRRQLPCP 108

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GKTTT+E++  AL+ +    A  G+ NN +GVPLT+  +  +    + E+GM
Sbjct: 109 VVAVTGSAGKTTTRELIRAALAPLGVVQASSGNNNNDVGVPLTVLGVGPEHGAAVIEMGM 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              GEI  L+    P IAVIT I  AH+      E IA+AK EI   L   G + +   D
Sbjct: 169 RGPGEIARLSRCAEPQIAVITNIGTAHIGRLGSREAIAAAKCEITASLAADGLVVIPAGD 228

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              E   A+  A  ++ +   G +  +        +          L+ + + +     G
Sbjct: 229 PLLEAALAQCWAGRVRRVALEGDALESVRPEAPVDRLGVVDVCAGVLRLEGLAIRLPLEG 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A+N+L+ L +   L   +             +          N+       +  +  
Sbjct: 289 RHNARNLLLALTVAQELGVPLAQ----------LQDLKVAVPGGRNRRIELAGIQVLDET 338

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +   A+    ++  H  GRR AVLG M E+G+ S + H  +AE      +  + L   
Sbjct: 339 YNASPEAVFAALELLAHQAGRRFAVLGAMLELGDQSVALHRQVAERAVACGLDGLVLVMA 398

Query: 410 HVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              A   A   +    +   +T +     + + L  GD +++K+S      RL+  L
Sbjct: 399 GAEADAMAEAAAPLPRLQRVDTPEQAVPVLAAWLQSGDTLLLKASRGVALERLLPEL 455


>gi|269956080|ref|YP_003325869.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304761|gb|ACZ30311.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 141/489 (28%), Positives = 213/489 (43%), Gaps = 35/489 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L T  ++ QA  G      P   V G +  DSR + P   F AI G   DG DF   
Sbjct: 1   MIEL-TASEVAQATGGRLT-ADPGVRVTGPVVADSRLVEPGALFAAIPGARVDGADFAAG 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-----TIIAIT 114
           AV  GA LV+   ++        +PV  VDDV  AL  LA     R +A      + +IT
Sbjct: 59  AVADGAVLVLAAREID------GLPVVVVDDVAAALGDLARVVLERLRAANPAVKVFSIT 112

Query: 115 GSVGKTTTKEM-----LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           GS GKTTTK++        A      T A  GS+N+ IG+PLT+ R        + ELG 
Sbjct: 113 GSAGKTTTKDLLGRLVAGEAADGGSDTIAPTGSFNSEIGLPLTVLRGTAATRKLVLELGA 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G+I +L  +VRP IAVI  +  AH+  F   E IA AKAE+  GL   GT  LN DD
Sbjct: 173 DKPGDIGYLASIVRPQIAVILMVGTAHIEFFGSQEAIADAKAEVLGGLVPGGTAVLNADD 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----------K 279
                L  ++ ALG   + +FG+  +AD +       +                      
Sbjct: 233 ERVLGLAPRATALG-HRVVTFGRVPSADVRAEDVTVDATGRASFTLRVRGRVAAAGEVAD 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + +                    + + A    ++ A  +   + G   R          
Sbjct: 292 DLRLPVSLRLVGEHHVSNALAAATAAILAGTAPSVVAERLSAAEPGSPHRMAVTERPDGI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++D++YNANP SM+AA+  ++ ++     R +AVLG+M E+GE +++ H  +  ++   
Sbjct: 352 TVVDDAYNANPESMRAALRSVAVMAGRT-RRSVAVLGEMRELGEGARAAHDAIGRLVVRL 410

Query: 400 NISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           NI  + + G     + +   +         +   +D     +   L  GDVV+VK+SN  
Sbjct: 411 NIKLLVVVGDGAYHIHEGAMQEGSWGEETVFVPDLDAARAELAERLRPGDVVLVKASNGS 470

Query: 456 GFYRLINLL 464
           G ++L + L
Sbjct: 471 GLWQLGDEL 479


>gi|161511189|ref|NP_813012.2| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570120|ref|ZP_04847529.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298385006|ref|ZP_06994565.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
 gi|251840501|gb|EES68583.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298262150|gb|EFI05015.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 1_1_14]
          Length = 849

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 104/493 (21%), Positives = 193/493 (39%), Gaps = 39/493 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M+  +T   + + I    +G   +  ++ +  DSRS++   +  FFA+     +G  +I 
Sbjct: 1   MS--YTIESIAEYIGARRVGE-HEATIDWLLTDSRSLSFPEETLFFALPTKRNNGARYIS 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIP-------------------------VFGVDDVLG 93
               +G    VV  +    + +                                V + L 
Sbjct: 58  ELYDRGVRNFVVTEEDFKRMENGEWKMENAMQQDGAQPTPNSRLSILDFSNFLIVANPLK 117

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL KLA A R   K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++
Sbjct: 118 ALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSV 177

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +
Sbjct: 178 WQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTL 237

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F+  +           +    L +   A  + T      S     +     + +++    
Sbjct: 238 FKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYISKVTKKEDHT 290

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V             I +    ++   L  ++     +  A +        E    R    
Sbjct: 291 VIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVK 350

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +    LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A
Sbjct: 351 EGKNNCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVA 410

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSS 452
           +++    I+ +   G  + +       +   ++    D L    I  +L   +V+++K S
Sbjct: 411 QLIKSRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS-EVILIKGS 469

Query: 453 NSCGFYRLINLLL 465
               F  +   L 
Sbjct: 470 RVFNFDLVSEELE 482


>gi|256394930|ref|YP_003116494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
 gi|256361156|gb|ACU74653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanylligase [Catenulispora
           acidiphila DSM 44928]
          Length = 447

 Score =  193 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 133/467 (28%), Positives = 199/467 (42%), Gaps = 22/467 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL +  ++   + G   G          ++D R   P   F A  G + DGHDF+  A
Sbjct: 1   MIPL-SLEEIAVVVGGTVAGGGSVTVTAPAALDGRKAEPGGLFVAFAGEYADGHDFVDQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            + GA  V+            S+P   V D   AL +LA     RLR   T++ +TGS G
Sbjct: 60  ARAGAAAVLGTRP-------TSLPTVVVQDAREALQRLAKHVVDRLRPGLTVVGVTGSQG 112

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT TK+++   LSS   T A  GS NN +GVPLT+ R   +  F + E+G  H+G+I  L
Sbjct: 113 KTGTKDLIAAVLSSAAPTVATAGSLNNELGVPLTMLRADAETRFLVLEMGARHVGDIAAL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T LV P +AV+  +  AHL  F     IA  KAE+ +GL   GT  LN DD     +   
Sbjct: 173 TDLVAPDVAVVLNVGRAHLGEFGSRGAIAKTKAELVQGLAPGGTAVLNADDPRVAAM--- 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            H L    + +FG++++AD Q+       ++          +       +    A   L 
Sbjct: 230 -HTLTDGPLLTFGRAEHADVQVLY--LVLDRLGRPSFTVRTADARAVVTLPLIGAHQSLN 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V+   A       A            R       G  TL+++SYNANP S +AA+ 
Sbjct: 287 AAAAVTAGLAAGVPLEAATKALATASLSKWRMELRGLAGGATLLNDSYNANPDSTRAALD 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++     RRIAVLG+M E+G  +++ H  +    +      +   G     +  A 
Sbjct: 347 A---LAAIEAARRIAVLGEMRELGPSTETEHRAIGRYAAHR-ADIILAVGAPAHPIATAA 402

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                       D    +++  L  GDVV+VK+S       +   L+
Sbjct: 403 --GPRALTLPDNDAALAWLREHLAAGDVVLVKASRGGRLDEVAAALV 447


>gi|124004631|ref|ZP_01689475.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
 gi|123989754|gb|EAY29283.1| Mur ligase domain protein/alanine racemase [Microscilla marina ATCC
           23134]
          Length = 833

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 104/468 (22%), Positives = 195/468 (41%), Gaps = 12/468 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           +     ++  IQ   +        V  + +DSR +    Q  +FAI G H++GH+F+   
Sbjct: 1   MLVIKQIVPIIQATLVQQTQSDQAVYHLLLDSRKLYNPSQALYFAINGEHHNGHEFVAEL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +G    V+  ++ A +   +  +  V   + AL ++A A R + +  +I +TGS GKT
Sbjct: 61  YARGVRNFVIEENLPAHVKLPNANILKVTSAVNALQQVAAAHRNQYQIPVIGVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L+   K      SYN+  GVPL++ +M      GIFE G+S   E+  L  
Sbjct: 121 MVKEWLAKLLAEDFKVVKSPKSYNSQTGVPLSVWQMNKRHTMGIFEAGISAKNEMTALQK 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P I + T +  AH   F    +  + K ++FE  +       +        +  K+ 
Sbjct: 181 VIQPSIGIFTNLGTAHDEGFDNRTQKFAEKWKLFEHCKAVVCCAEHLQTYH--DIVTKTS 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G    +   +        ++     +Q+ ++VQ QG++  +    I     +N+L  +
Sbjct: 239 FSGQPFTWGKNEQAQLRLLDKQTHLTQQQTQLKVQYQGENHFIQAPFIDEASVENILHCV 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L    D   + ++   P      R           LID+SYN + A +K A+  +
Sbjct: 299 ATMCLLGLSFDKIQRRIARLRPV---SMRLELKRGMRNTYLIDDSYNNDLAGLKIALDFM 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S    + +   I VL DM + G   +  +  +A++L    I  V   G  +   + +   
Sbjct: 356 STQDVNLQK--IVVLSDMLQSGLPPEKLYQAIAQLLQSKAIDRVIAVGEEIKKHQASF-N 412

Query: 421 SIHVHYSETMDGLFLFIQSSLV-DGDVVVVKSSNSCGFYRLINLLLEE 467
            + V + +    L             V++VK +    F  L++ L ++
Sbjct: 413 VLDVVFFDQTKDLLESQVELARLANAVILVKGARRFRFEHLVHQLQQK 460


>gi|237785339|ref|YP_002906044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758251|gb|ACR17501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium kroppenstedtii DSM 44385]
          Length = 505

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 130/503 (25%), Positives = 200/503 (39%), Gaps = 45/503 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+ T   L     G+ + I P   V G +  DSR IAP   F A+ G   +GHDF   
Sbjct: 1   MIPM-TAGRLADITGGYLVNIDPDAVVPGPVEFDSRKIAPGSVFLALPGARVNGHDFAAQ 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVF-GVDDVLGAL----------------------- 95
           A++ GA L +++ DM   + ++ IP    V+    AL                       
Sbjct: 60  AIKDGATLALLSRDM--GVPAVIIPHVEHVETNATALEYDRDGEGEAALAALSKLAHHTV 117

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L           +I +TGS GKT+TK+M+   L +  +T A  GS+NN IG P T  R
Sbjct: 118 TELVAHH----GLRVIGVTGSAGKTSTKDMIATILRTQGETVAPPGSFNNEIGHPYTALR 173

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF- 214
                 F + E+    +G I  L  +  P I  +  +  AHL  F   E IA AK E+  
Sbjct: 174 CTESTRFLVAEMSARGIGHIAHLARIAPPTIGAVLNVGTAHLGEFGSREAIAQAKGELVE 233

Query: 215 --EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---- 268
                +  G   LN DD     +  ++ A  I      G++ +           ++    
Sbjct: 234 ALPSADDGGVAILNADDRLVSGMAPRTSARVITFSVKSGEAGDDPADDHDAVIATDVVLD 293

Query: 269 --QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                                  Y   Q               +     A ++ H     
Sbjct: 294 SSARASFTLTMPTGESAPVQLQVYGQHQVANALAAAAVGFAVGMSVDEIATALSHHTAAS 353

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLS-QISPHGEGRRIAVLGDMCEMGELS 385
             R      +   T+I++SYNANP SM+A I+ L+  +    + +  AVLG M E+G  +
Sbjct: 354 ANRMDVRNRRDGVTIINDSYNANPDSMRAGIAALASTVQAREDAQSWAVLGQMGELGASA 413

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
              H  + E L  + I+HV + G  V   AL        + V + + +D     + SS+ 
Sbjct: 414 TDEHYSIGEELGRHQINHVVVVGNGVNQRALAHGAKDSGVDVTHVDDVDAAVDNVWSSVR 473

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
             DVV++K+S S G +R+   LL
Sbjct: 474 PDDVVLIKASYSDGLWRVAEGLL 496


>gi|296125247|ref|YP_003632499.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
 gi|296017063|gb|ADG70300.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Brachyspira murdochii
           DSM 12563]
          Length = 451

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 205/471 (43%), Gaps = 36/471 (7%)

Query: 6   TFHDLLQA---IQGHSIGIVPQGFVNG---ISIDSRSI---APQEAFFAIKGPHYDGHDF 56
           +  ++++    +       + +  ++    IS DSR          F AIKG  +DG+ F
Sbjct: 5   SLKNIIKVSKELNSKYSKNIEELDIDKELEISTDSRDSFDSTK--LFLAIKGDKFDGNKF 62

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            L    KG    +++   +      +  VF  DD +    KLA   R R    II++TGS
Sbjct: 63  ALETYNKGCRYFILSDQTI--NMPDNAKVFYTDDTILFFIKLAREYRRRFNIPIISVTGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTTKE+  + LS+  K     G++NN IGVP T+  +    +  + E GM+H  E+ 
Sbjct: 121 CGKTTTKELTHLFLSTKYKALKTEGNFNNEIGVPKTMFNLDTSYEIAVIEAGMNHKNELL 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            ++  +  +  +I  + P H+++   IE IA AKAE+F   ++     +N + +  ++LK
Sbjct: 181 RISECIEANTVIINNVEPVHIAHLGSIENIAYAKAELFNHTKENANAVINKNTNCADILK 240

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            ++    IK I                K+  ++     + +G          G     N+
Sbjct: 241 KEAKRNNIKNII-----------EADIKEIVKKDDNSFEYKGIIFNHNLV--GDFNLYNV 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L    I   D+       +         K     +N     +I++ YN+NPA++   
Sbjct: 288 LSALKAAEIYNIDLKKC----ADILLNYQSQKNRMQIINIKGCNIINDCYNSNPAAL--- 340

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALK 415
            ++L  +S   E ++IAV+GDM E    + S+H ++   ++   NI  V   G H   + 
Sbjct: 341 KNMLKYLSQRNESKKIAVIGDMLETETENSSYHKEIGNNINELKNIDTVIAVGEHSKDIY 400

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           + +  +   +Y E        ++  L D   +++K+S   GF  +I+ + E
Sbjct: 401 NIV--NCEKYYFENAQSAIEKVKDFLKDNTAMLIKASLGMGFAVIIDSIKE 449


>gi|313203022|ref|YP_004041679.1| alanine racemase [Paludibacter propionicigenes WB4]
 gi|312442338|gb|ADQ78694.1| alanine racemase [Paludibacter propionicigenes WB4]
          Length = 819

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 105/463 (22%), Positives = 183/463 (39%), Gaps = 12/463 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-P-QEAFFAIKGPHYDGHDFILHAVQ 62
              + + Q +  +    VP   +N +  DSRS++ P +  FFAI     +GH++I    Q
Sbjct: 1   MKLNKIAQIVGAND-SNVPSVEINWLLTDSRSLSFPVESLFFAIHTARNNGHNYIAELYQ 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +     VV+                V+D L AL  LAVA R      +I ITGS GKT  
Sbjct: 60  QNLRYFVVSEMHPEFEKMTDAVFLKVEDSLKALQALAVAHRNAFDIPVIGITGSNGKTVV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ IGVPL++  +      GIFE G+S   E++ L  ++
Sbjct: 120 KEWLYQLLHTDYVITRSPRSYNSQIGVPLSVWALSESTQLGIFEAGISEPHEMKRLQPII 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I + T +  AH  NFSG+++    K ++F+  E                L   S A 
Sbjct: 180 RPTIGIFTNLGDAHQENFSGLKQKCEEKLQLFDQSEVLVYCS-------DNKLVEISIAQ 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                  F     +D    +  Q  +       +   +       I +    ++   L  
Sbjct: 233 SAFKGVFFS-WGKSDKATVQIVQKEKTVSSTKVVLKYNAVESSVTIPFTDDASIENALQC 291

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           V+++        +        E    R           +I++SYN++  S+  A+  L+Q
Sbjct: 292 VAVMLYLGLKTAEIAKRILLLEAVAMRLEVKEGVRDCLIINDSYNSDLNSLSIALDFLNQ 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   +  +  +L D+ + G+ S   +  ++ ++   N+  +   G  +    D      
Sbjct: 352 QATAKKLSKTLILSDILQSGQTSDELYKTVSGLVHNKNVQRIIGIGSEISKHADIFELVD 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + +T D L   I   L   +++++K S +  F  +   L 
Sbjct: 412 KTFFEQTEDFLKSPILRELK-NEIILLKGSRTYHFEDISEKLE 453


>gi|313145406|ref|ZP_07807599.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134173|gb|EFR51533.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 840

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 105/474 (22%), Positives = 196/474 (41%), Gaps = 24/474 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   +++      +G  P   ++ +  DSRS+    +  FFAI     +G  +I    +
Sbjct: 12  YTIESIVEKTGARRLGNKP-ATIDWLLTDSRSLCFPEETLFFAIPTKRNNGARYIPDLYE 70

Query: 63  KGAGLVVV----------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           +G    VV          +++ +    +       V + L AL KL+   R   +  +I 
Sbjct: 71  RGVRNFVVTSEDFKGLTMDSEQLKVTMAQECNFLIVPNTLKALQKLSEQHRGSFQIPVIG 130

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS  +       SYN+ IGVPL++ +M  + + GIFE G+S +
Sbjct: 131 ITGSNGKTIVKEWLHQLLSPDRVIVRSPRSYNSQIGVPLSVWQMNEESELGIFEAGISEM 190

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+R L ++++P I ++T I  AH  NF  ++E    K  +F   +    +  N D+   
Sbjct: 191 GEMRPLQNMIKPTIGILTNIGGAHQENFFSLQEKCMEKLSLF---KDCDVVIYNGDNEMI 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                KS     +  +S  K       + + ++  + + +  +            I    
Sbjct: 248 SNCVGKSMLTAREIAWSM-KDIERPLYISRVEKREDHTVISYRYLEMDNTFCIPFIDDAS 306

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L  L     L    D   + ++   P      R      +    LI++SYN++ AS
Sbjct: 307 IENSLNCLAACLYLMVPADQITERMARLEPV---AMRLEVKDGKNNCILINDSYNSDLAS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I  +   G  + 
Sbjct: 364 LDIALDFLYRRSQSKGLKRTLILSDILETGQSTTTLYRKVAQLVHSRGIEKIIGVGAEIS 423

Query: 413 ALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +        I  ++      L    +   L   +++++K S +  F  +   L 
Sbjct: 424 SCASKF--DIEKYFFPDTKALLASDVIKKLK-NEIILIKGSRNFSFDLVSEELE 474


>gi|251772195|gb|EES52765.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 467

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 115/475 (24%), Positives = 198/475 (41%), Gaps = 19/475 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS--IDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+   +  +LL+ ++GH     P+G +  I+   DSR+I     F A++G   DGHD + 
Sbjct: 1   MSATVSALELLEGVEGHWFSSPPKGELFWINAGTDSRTILSGNVFVALRGLRTDGHDHLE 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITG 115
            A  +G  L VV   +      ++IP   V+D L AL K+         R+   +I++TG
Sbjct: 61  QAAARGTTLAVVERGIPG----VNIPQIVVEDTLVALRKMGALVLAAHRRAGHRLISLTG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           SVGKTTT+E++   L       +     NN IGVPLTL   P    + + E+G+ + G++
Sbjct: 117 SVGKTTTRELIRTGLPPGASHGSSGNE-NNEIGVPLTLLSWPPSARWCVLEVGIRNPGDM 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  L+     ++T +AP HL     +E +   K+++  G+ + G   +  +    E  
Sbjct: 176 DILAPLLSADTGLVTAVAPVHLETLGTLEGVWKEKSKLLRGVVEGGCRIVPEEIRRTEG- 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +    +   + +      +  +  +       E   +    +      +           
Sbjct: 235 RDPLFSDPTRRLLGVSLDRFPEADVSGELLSPEGKAVLSLRRPPLRLPLPWPSRALGWCA 294

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ++    + +           A        G   R     +     L+ + YNANPASM  
Sbjct: 295 LMALAALAAEGV----DLASAAERISLYRGYSGRMERRSHSSGLLLLLDHYNANPASMSE 350

Query: 356 AISVLSQISPHGEG-RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A   LS+     +G R  AVLGDM E+GE SQ FH ++ E  ++  ++ VW  G    + 
Sbjct: 351 AFEWLSRERGIRQGARAYAVLGDMLELGEGSQGFHREIGERAAMAGVAGVWYRGEQKSSF 410

Query: 415 KDALPRSIHVHY-SETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINLLLE 466
            +   R     +           ++S    G  D+++VK S       ++  LLE
Sbjct: 411 VEGFLRGGGKEFQIRDASVFESDLKSGRGPGPEDILLVKGSRGMKLEEVVATLLE 465


>gi|325915638|ref|ZP_08177946.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538198|gb|EGD09886.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 495

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 122/500 (24%), Positives = 198/500 (39%), Gaps = 48/500 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R+++    + A++G   DGHDF   A
Sbjct: 1   MK-LTPLSLIAHWAGGELHGD--DAMIDAVGNDTRALSNGSLYVALRGERVDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  ++V       + +L +P   V +   AL ++A   +      +IA+TGS GKT
Sbjct: 58  LAQGASGLLVER----LLPTLGVPQVVVQNTELALARIAAGMQRDRATRVIALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L+          YA  G+ NN IG+PL +   P D D  I+E+G    G+I
Sbjct: 114 SVKALLLAILTEAGRVDGTTVYATPGNRNNEIGLPLAVIAAPDDADVAIYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + RP +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIARPQVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPSDGVAVINADDAFGAWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + + HA  +    +  +G   +AD + R+ +  ++ +   +       +V     G H  
Sbjct: 234 EQQLHAQPVPGRRVLRYGLQASADIRARQLRLQADGAQFTLVTPQGEAQVTLPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+   P  GR   +R         L+D+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQARPVAGRQIAHRLPGG---AVLVDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G    + H           +  ++  G    A
Sbjct: 351 DAAIDALAAAP----GDGWLVLGDMRELGAEGAALHAAAGRRARAAKLQRLYALGELSAA 406

Query: 414 LKDALPRSIHVHYSETM------DGLFLFIQSSLVDGD---------------------V 446
              A      V  +           L     S     +                      
Sbjct: 407 AAQAFGEGGRVFATHAALATALQADLAQVAGSQTQTQESSLMHEHTGAAAQAATAHLPPT 466

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           ++VK S      R++  LL 
Sbjct: 467 LLVKGSRGSAMDRIVTALLA 486


>gi|262276877|ref|ZP_06054670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
 gi|262223980|gb|EEY74439.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [alpha
           proteobacterium HIMB114]
          Length = 443

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 130/435 (29%), Positives = 221/435 (50%), Gaps = 13/435 (2%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK-GAGLVVVNTD-MVASIGSLSIPVFGVD 89
           IDSR +     F  IKGP+ DGH +    + +    +++   + +       S  V   +
Sbjct: 16  IDSRLVKENSVFLCIKGPNNDGHKYAKLVLDRFKRTIIICEKNSIYLKNLKNSNRVIFCN 75

Query: 90  DVLGALNKLAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                L  LA   R    +   I ITGS GKT+ K++L   L+  KK+Y    SYNN+IG
Sbjct: 76  STKDFLINLARIKRYLLNSKNFIGITGSSGKTSLKDLLFTVLNKYKKSYKSQKSYNNNIG 135

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +P TL    ++ +F I+ELGM++ GEI  L+++++P++A+IT I  AHL N   I+ IA 
Sbjct: 136 LPYTLVNQNINSEFNIYELGMNNFGEIDSLSNILKPNLAIITNIGEAHLGNLGSIKNIAK 195

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AKAEI + + K GTI LN+D  FF  LK  S    IK + SFG +  A    +       
Sbjct: 196 AKAEIIKNITKQGTIILNHDCKFFNQLKKISKKNKIKVL-SFGSTSKATVSYKVISLN-- 252

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +E++L     ++  + I  +M  NML+ + ++S    ++  +    +      GRG 
Sbjct: 253 --EIEIKLNNLKFKLKLNDINPNMINNMLVCILVLSFFKLNIRKSKNYFNKIKNTRGRGN 310

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +         +ID+SYN+NP+S+K++I+   ++S   +   I V+GDM E+G+ S+  
Sbjct: 311 IVKFRKEI---IIIDDSYNSNPSSLKSSINQFEKLSTKKKK--ILVIGDMLELGKFSKKK 365

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           H ++   LS    + + L G     +   +  +    Y E ++    + ++ L++  +++
Sbjct: 366 HGEIGNYLSKMGFNRILLVGKDSKEIYKKIKSTFWCKYFENINIFSKYFKNVLIENSIIM 425

Query: 449 VKSSNSCGFYRLINL 463
            K+SN  G  +L+N 
Sbjct: 426 FKASNGVGLNKLLNK 440


>gi|221065134|ref|ZP_03541239.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
 gi|220710157|gb|EED65525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Comamonas
           testosteroni KF-1]
          Length = 475

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/473 (24%), Positives = 191/473 (40%), Gaps = 23/473 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D HDF+  
Sbjct: 1   MMTLAKALELIQTHIPQARLVGNGQLELARVHTDTRTLQDGDLFVALKGERFDAHDFLSQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A         V       + +  +    V D L AL  LA A R +    +IA+TGS GK
Sbjct: 61  AQ----AAGAVAAVASHGLETAGMAGIEVPDTLLALGALARAWRAQFDLPLIAVTGSNGK 116

Query: 120 TTTKEML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           TT  +M+         +  +   A  G++NN IG+PL L RM       + E+GM+H GE
Sbjct: 117 TTVTQMIASVLRAHVGAQGEAALATRGNFNNSIGMPLNLLRMTGAHRIAVLEMGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L + G       D++  L
Sbjct: 177 IAELAAIGQPTVALVNNAQREHQEFMGTVEAVARENGSVLGFLPRDGVAIFPAGDTYTPL 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
               +          FG++             ++ +W            V  H  G H  
Sbjct: 237 WTELAAGRS---CLMFGEAVAGAQVFASDVVWADGAWSFALNTPQGVAAVQLHIAGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L            +    K LS F P  GR +     +N    T++D+SYNANP S+
Sbjct: 294 RNALAAAACAHAAGVSLAAIAKGLSGFEPVTGRSRALAVQVNGQGVTVVDDSYNANPDSV 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI+VL+++       ++ VLGDM E+G+    FH +   +     I+ V+  G     
Sbjct: 354 AAAIAVLAELPA----PQLLVLGDMGEVGDNGPQFHAEAGALARQSGIAQVFALGEQSAF 409

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              A        + E+M  L   + + L     V+VK S      +++  +  
Sbjct: 410 AASAFGSGAR--HFESMAALEQAVCAVLPKVGSVLVKGSRFMKMEQVVQSIEA 460


>gi|314934153|ref|ZP_07841514.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653058|gb|EFS16819.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 378

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 120/388 (30%), Positives = 181/388 (46%), Gaps = 14/388 (3%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I            +NG++IDSR+I     F   KG + DGH F+  A++ GA
Sbjct: 5   TLEQIKHWIPCEIDEQYLSHSINGVTIDSRNIEKDMLFIPFKGENVDGHRFVAQALKDGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           G              +  P+  V+D L AL  LA A        +IA+TGS GKTTTK+M
Sbjct: 65  GASFSEK-GTELNEDIEGPIIWVEDTLKALQDLAKAYLKYVNPKVIAVTGSNGKTTTKDM 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L++  K     G+YNN IG+PLT+  +  D +  I E+GMS   EI  L+ +  P 
Sbjct: 124 IESVLTTEFKVKKTQGNYNNEIGMPLTILDLDEDTEISILEMGMSGFHEIELLSSIAEPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAVIT I  +H+ +    E IA AK+EI  GL++ GT   + D+   +    +   L   
Sbjct: 184 IAVITNIGESHMQDLGSREGIAKAKSEITIGLKENGTFIYDGDEPLLKSHLEQ---LNKA 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S G   +           +E     +  +          +G H  +N  + + I   
Sbjct: 241 RLISVGLGNSNTLVCHVDDIETEGIAFTINDK---ESFTLPILGTHNMKNATIAIAIGHE 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +T    ++     +  G R          T+I+++YNA+P SMKAAI  LS +  
Sbjct: 298 LGLSYETIKDNINH---VKLTGMRMERHQTTNNVTVINDAYNASPTSMKAAIDTLSSM-- 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             EGR+I +L D+ E+GE SQS H ++ 
Sbjct: 353 --EGRKILILADVLELGENSQSMHEEVG 378


>gi|325132962|gb|EGC55639.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Neisseria meningitidis M6190]
          Length = 436

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/451 (28%), Positives = 199/451 (44%), Gaps = 22/451 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR I   + FFA+ G  +D HDF+   +  GA  VVV+ +  A++   
Sbjct: 3   SESKPVSRIVTDSRDIRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCAAMDGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVDDTLAALQTLAKAWRENVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P+ A++     AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPNAALVNNAMRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGIALIPQEDANMAVFKTATLNLNTRTFG----IDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                          ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAAI VL+++       RI V+GD
Sbjct: 295 KGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYACDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++  L +   V+VK S       ++  L ++
Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|307565241|ref|ZP_07627735.1| alanine racemase [Prevotella amnii CRIS 21A-A]
 gi|307346054|gb|EFN91397.1| alanine racemase [Prevotella amnii CRIS 21A-A]
          Length = 849

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/472 (22%), Positives = 185/472 (39%), Gaps = 16/472 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M+  ++   +   +     G   +G V+ +  DSRS+    +  FFA++    DGH++I 
Sbjct: 24  MS--YSIEKIASLLGVEIYGGR-EGSVSFLLTDSRSLCFPEETLFFALRTERGDGHNYIS 80

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV                  V     AL +LA   R      I+ +TGS 
Sbjct: 81  ELYARGVRFFVVEELPCEWEKLYSQASFLKVSSSKRALQRLAACHRDEFHIPIVGVTGSN 140

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  K+      SYN+ IGVPL++  +      GIFE G+S  GE+  
Sbjct: 141 GKTVVKEWLYQLLSFSKRVTRSPRSYNSQIGVPLSVWLLNEQTQVGIFEAGISKKGEMEV 200

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L ++++P I V+T++  AH  NF  +EE    K  +F        +   YDD        
Sbjct: 201 LRNIIKPTIGVLTSLGDAHQENFVSMEEKCREKLRLF---TDVDVLVYPYDDKLIRSCVD 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                G    +S   +  + F     K     +   +  Q K        I      + +
Sbjct: 258 TLSFKGKGLGWSVKDASVSLFIKDIKKSELSTTIAYIWKQEKEDSYTIPFIDDASIYDSI 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +   L    +     + +  P      R      Q   TLI++SYN++  S+  A+
Sbjct: 318 TCLALCLYLGVKKEVLKARMPLLEPV---AMRLEVKEGQRGCTLINDSYNSDINSLDIAL 374

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   +R  VL D+ +  E  ++ +  +A +     +      G  ++  + A
Sbjct: 375 DFMNRRPDHKGRKRTLVLSDILQSAEDDEALYRRVASLAEKRGVEKFIGIGETLICQRKA 434

Query: 418 LPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   +  T+ G       +      +V+++K +   GF +L  +L+ +
Sbjct: 435 FNNIKEKCFFTTVGGFLSSDAFRQM--HDEVILLKGARCFGFEQLTEMLVNK 484


>gi|311745050|ref|ZP_07718835.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
 gi|126577561|gb|EAZ81781.1| Mur ligase domain protein/alanine racemase [Algoriphagus sp. PR1]
          Length = 823

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/470 (21%), Positives = 186/470 (39%), Gaps = 16/470 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFIL 58
           M    +   + +  +G  I       ++ I+IDSR ++   +  F ++ G    G DFI 
Sbjct: 1   MLRALSIDQIAEITRGELIQNDHIQKISQIAIDSRQVSNPEKTLFISLVGAKAKGQDFIP 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             +  G    +V+         L       VDD   AL ++A   R   +  +++ITGS 
Sbjct: 61  ALIDLGVRNFIVHKGNSLKRELLAKANFVLVDDTRKALQEIARYQRSYFEKPVVSITGSN 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS   +      SYN+ +GVPL++  +       I E G+S  GE+  
Sbjct: 121 GKTIVKEWLGQVLSQAYQVAKSPKSYNSQVGVPLSVFGIDAGHQVAILEAGISKTGEMAA 180

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P++ + T I  AH   FS  E     K  +F+G +    +    D      +  
Sbjct: 181 LERIIQPNLGIFTNIGSAHKEGFSSQESKILEKLSLFKGSD---FLVYCKDQELPASIIE 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +      +S      AD+      Q      + ++    +M            +N+ 
Sbjct: 238 QEFSADKLIAWS--DKAGADYTRSIKIQDVGAKIIFIKSDLSTMTFHVPFSDPASLENIT 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L    +   + L+   P + R              LID++YN + A +K A+
Sbjct: 296 HVLVGAMTLGLKPELIQQGLNHLKPVDMRLT---LKPGVNDSLLIDDTYNNDLAGLKVAL 352

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+   P      I +L D+ + G  +   + ++AE++  +++  +   G H+  L+  
Sbjct: 353 DFLNLQRPKKRK--ILILSDLLQQGT-AAQLYSEVAEMVKSHHLDQIIGVGQHIFQLESF 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            P+          + L   +       D++++  +   GF R++N L + 
Sbjct: 410 FPK--QFIGYSDTEKLLDELNPEEFSNDLILITGARPFGFERVVNKLQQR 457


>gi|307578765|gb|ADN62734.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 465

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 185/469 (39%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA 
Sbjct: 3   LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML
Sbjct: 61  GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 116

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                  A  S    YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +
Sbjct: 117 VSILEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A++  IAPAHL     +  +A  K EI     + G   +   D  F L   +   
Sbjct: 177 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    AD      +   +     +      + V     G H   N L    
Sbjct: 236 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 295

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +      L +     GR   +          LID+SYNANP S+  AI  L+
Sbjct: 296 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 352

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    VLGDM E+G    + H           ++ ++  G             
Sbjct: 353 ----AASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 408

Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
            HV      D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 409 GHV--FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 455


>gi|329901108|ref|ZP_08272724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549207|gb|EGF33795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D- alanyl ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 464

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/431 (28%), Positives = 190/431 (44%), Gaps = 19/431 (4%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DL   + G           +GIS DSR+      F A++G  +D H F+     +G 
Sbjct: 4   TLSDLQPWLAGARANG--DASFDGISTDSRTAPAGSLFVALRGEKFDAHKFMDGLAARGV 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VVV          + IP   V D   AL  +A   R +    +I +TGS GKTT KEM
Sbjct: 62  AAVVVER----VPKGMEIPALIVPDTRIALGAIARHWRRQFSLPVIGVTGSNGKTTVKEM 117

Query: 126 LTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           L   L +        A  G++NN IGVPLT+ R+       + ELGM+H GEI  L+ + 
Sbjct: 118 LAAILGTALGADHFLATRGNFNNDIGVPLTVLRLHAGCRAAVIELGMNHPGEIAQLSMIA 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P + ++      H      +E +A     +   L   G      DD +  L +  + A+
Sbjct: 178 QPTLGLVNNAQREHQEFMVSVEAVAKENGAVISALPANGIAVFPADDPYAPLWRGLATAI 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G + + +FG S +AD     WK     S ++V+   ++  V     G H  +N L  +  
Sbjct: 238 GQRKVMTFGFSDDAD-VSCSWKADGFGSELQVRAGERTFTVKVDAAGQHNVRNALAAIAC 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +   +D  ++ L+ F P  GR +R   A       +ID++YNANP S++AAI VL+Q
Sbjct: 297 ALGIGIGIDAIVRGLAAFAPVNGRLQRKHAASGAQ---VIDDTYNANPDSVRAAIEVLAQ 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                   R+ VLGDM E+G   + +H ++        I H++  G        A     
Sbjct: 354 APS----PRVLVLGDMGEVGNDGRQYHEEVGAYARGRGIQHLFTLGQLAQHSGSAF--GA 407

Query: 423 HVHYSETMDGL 433
           H  +   ++ L
Sbjct: 408 HARHFNDIEAL 418


>gi|332878007|ref|ZP_08445737.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332683969|gb|EGJ56836.1| alanine racemase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 822

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 101/466 (21%), Positives = 185/466 (39%), Gaps = 14/466 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M+  +T   +   +  H  G      V  I  DSRS+       FFA++    DGH +I 
Sbjct: 1   MS--YTLERIASLVGAHLWG-SETVEVRWILTDSRSLCFPEDTLFFALESRRNDGHRYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              ++G    VV+                V   L AL +LA   R      ++ ITGS G
Sbjct: 58  ELYRRGVRSFVVSRLPEDMTSCPDANFLQVVSPLKALQRLAERHREAFDIPVVGITGSNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   LS  K       SYN+ IGVPL++  +    + G+FE G+S  GE+  L
Sbjct: 118 KTVVKEWLYQLLSPEKNVTRSPRSYNSQIGVPLSVWNLDERSEVGLFEAGISEPGEMEAL 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +++P I V T +  AH  NF+  E+    K ++F+  +       +            
Sbjct: 178 QSVIQPTIGVFTCLGDAHQENFTSYEQKCLEKLKLFKDAKVLVYDMDDARVVGCV----N 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A   +      + ++    +   ++   ++ +    +GK        I      N + 
Sbjct: 234 RSAFKGEYFAWSRQRRDVPLYIASVEKREAETVVSYIYKGKEAACSIPFIDEASLANSVS 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   L    +T    ++V  P      R      +   TLI++SYN++  S+  A+ 
Sbjct: 294 CLAVCLHLGMSPETIAARMAVLEPV---AMRLEVKEGRSGCTLINDSYNSDYNSLDIALD 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +++       +R  +L D+ + G   +  +  +A ++++  +      G  + A++   
Sbjct: 351 FMNRRPDCAGRKRTLILSDIEQAGGAPEDLYGRVARLVAMRGVEKFIGVGPCLSAVQGLF 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              +   +  + D L       ++  +V+++K + S  F  L   L
Sbjct: 411 --GMEACFYRSTDELLGSGVLDMLHDEVILIKGARSFRFDVLTEHL 454


>gi|325280813|ref|YP_004253355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312622|gb|ADY33175.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 428

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 120/461 (26%), Positives = 205/461 (44%), Gaps = 33/461 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L  AI+GH            I+ DSR I   + F A+KG ++DG+ +   A+++
Sbjct: 1   MTTIEKLYPAIRGH-----------RITTDSRQIIRGDIFIALKGENFDGNRYAAAALEQ 49

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L +++     S G        V D L  L +LA   R +    I+ ITG+ GKTTTK
Sbjct: 50  GAALAIIDNADYLSPG-----CELVADSLLFLQQLAHYHRQQLHIPILGITGTNGKTTTK 104

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+    LS   KT+A  G++NNHIGVPLTL  M    +FGI E+G +H GEI+ L  +  
Sbjct: 105 ELCHAVLSKKFKTFATQGNFNNHIGVPLTLLSMDETTEFGIVEMGANHPGEIKTLCEIAD 164

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P   +IT I  AHL  F   E I + K  +++ L                +  ++ H   
Sbjct: 165 PDFGIITNIGHAHLEGFGSYENIIATKKALYDYLLPKNGPVFVNTGDPLLMQLSRDHK-- 222

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 +   +  D    + KQ        ++ +   + V  H +G +   N +    I 
Sbjct: 223 -----RYTYGQEGDLLKGEIKQTVPYLVYSLKTRKGDLYVKTHLVGGYNFDNAMAASAIG 277

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D      A+  + P   R +  R   N    T+I ++YNANP+SM+A++    ++
Sbjct: 278 MHFGIDPLDIQTAIENYRPSNLRSQLIRSGRN----TIILDAYNANPSSMRASVGNFCEM 333

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                  ++ +LG+M E+G  + + H ++  +    N   ++L G +     D   +   
Sbjct: 334 PGE---HKVVILGEMLELGTENAAAHEEIVRLTQQGNFDRIFLIGNNFEHCAD---KCNF 387

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           + + +  +    +++S  ++   + +K S      R++  L
Sbjct: 388 ITWFKDTESFMEYLKSHPLNDSFIFIKGSRGNKLERIVEYL 428


>gi|28199738|ref|NP_780052.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182682485|ref|YP_001830645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
 gi|28057859|gb|AAO29701.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Temecula1]
 gi|182632595|gb|ACB93371.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M23]
          Length = 468

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 185/469 (39%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA 
Sbjct: 6   LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML
Sbjct: 64  GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                  A  S    YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +
Sbjct: 120 VSILEHAAAQSSTVVYASSGNCNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A++  IAPAHL     +  +A  K EI     + G   +   D  F L   +   
Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    AD      +   +     +      + V     G H   N L    
Sbjct: 239 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +      L +     GR   +          LID+SYNANP S+  AI  L+
Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    VLGDM E+G    + H           ++ ++  G             
Sbjct: 356 ----AASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411

Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
            HV      D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 412 GHV--FADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|160896913|ref|YP_001562495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
 gi|160362497|gb|ABX34110.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Delftia
           acidovorans SPH-1]
          Length = 471

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/467 (24%), Positives = 191/467 (40%), Gaps = 20/467 (4%)

Query: 4   LWTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           + T    L+ IQ H     +    Q  +  +  D+R++   + F A+KG  +D + F+  
Sbjct: 1   MMTLQQALELIQSHIPQARLVGNGQAVLTRVHTDTRTLQAGDLFVALKGERFDANQFLAQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A                 + +  +    V D L AL  LA A R R    +IA+TGS GK
Sbjct: 61  AR----EAGAAAALAHGGLEAAGLAGIEVPDSLAALGALATAWRARFALPLIAVTGSNGK 116

Query: 120 TTTKEMLTIALSSIKKTY--ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+   L +       A  G++NN IG+PL+L RM       + E+GM+H GEI  
Sbjct: 117 TTVTQMVASILRAHAGEAALATRGNFNNSIGLPLSLMRMTAQHRVAVLEMGMNHPGEIAE 176

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      H      +E +A     +   L   G       D++  L + 
Sbjct: 177 LAAIGQPTVALVNNAQREHQEFMHTVEAVARENGSVLLSLPADGVAVFPAGDTYTPLWRE 236

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNM 296
            + A        FG+S +      +       +W            V  H  G H  +N 
Sbjct: 237 LAAAR---QCLLFGESADGAQVHARDALWLGDAWQFTLVTPEGEAPVRLHIAGRHNVRNA 293

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L            +    + LSVF P +GR +    ++     T+ID+SYNANP S+ AA
Sbjct: 294 LAAAACAQAAGVPLADIARGLSVFEPVQGRSRALGVSVQGRTVTVIDDSYNANPDSVAAA 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I VL ++       ++ VLGDM E+G+    FH +   +     I+ ++  G    +   
Sbjct: 354 IEVLRELPA----PQLLVLGDMGEVGDQGPQFHAEAGALARSLGIARLFTLGAQSTSAAT 409

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           A        + E M  L     ++L +   ++VK S      +++  
Sbjct: 410 AFGAGAR--HFEDMASLQQAACAALPEVGSILVKGSRFMKMEQVVQA 454


>gi|110640090|ref|YP_680300.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Cytophaga hutchinsonii ATCC
           33406]
 gi|110282771|gb|ABG60957.1| alanine racemase [Cytophaga hutchinsonii ATCC 33406]
          Length = 842

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/466 (21%), Positives = 178/466 (38%), Gaps = 19/466 (4%)

Query: 6   TFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           + ++L   +QG  I     P  F+  + IDSR +       FFAI G H+DGH  I    
Sbjct: 27  SVNELPGIVQGECIQQSTEPNTFIKQLVIDSRKLMAPAGAVFFAIDGKHHDGHAHITEMY 86

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           +KG  + +V   +  +          V   + AL   A   R +    I+AITGS  KT 
Sbjct: 87  KKGVRIFIVEKSISLNEIP-QAACIRVKSSVSALQACAAYRRKQLDIPIVAITGSNAKTI 145

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L+  +++         SYN+ IGVPL++  +      GIFE G+S   E++ L  +
Sbjct: 146 VKEWLSQTVAADYSVVKSPRSYNSQIGVPLSVWALNERHTIGIFEAGISTTKEMQALQKV 205

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + P I + T I  AH   F   EE    K ++F   +       +           + HA
Sbjct: 206 IEPTIGIFTNIGSAHDKGFKNREEKIQEKLKLFADCKVVIYCSDH----------EEIHA 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                               ++   ++ S+                + +    ++   L 
Sbjct: 256 EITAQHLPTFNWSLQSSATIEYSIAAKDSFQTQIEVKTKEHQGFFYLPFVDDASIENALH 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + L     +  +        +  G R           LID+SYN + A +  A+  L 
Sbjct: 316 VATTLFYLGYSIQEVSRKISGLQAVGMRLELKEANNDCYLIDDSYNNDLAGLSIALDFLE 375

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +       +  +L D+ E G  S   + ++A  L+   +  V   G  +  LK     +
Sbjct: 376 HVKQSE--VKTVILSDVLESGLDSAVLYKEVASYLTTAQVQRVIAIGSQITELKK--WYN 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               Y  T +     +  ++ + ++V+VK +    F ++++ L  +
Sbjct: 432 GRAEYYPTTEAFIKDLTKTVFEKEIVLVKGARIFQFEKIVSRLQHK 477


>gi|159901277|ref|YP_001547524.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894316|gb|ABX07396.1| alanine racemase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 851

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 188/468 (40%), Gaps = 23/468 (4%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A   H          +G + DSR       F A++    DGH FI  A+  GA 
Sbjct: 4   VADLIAA-GAHIAQAGDHIQWSGWAYDSRLAQTGNLFIALQTARADGHGFIRDAIAAGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VV       S+   SI V   +D L  L   A A   +     +AITGSVGKT+TK  +
Sbjct: 63  GVVCQ--YAPSVIPASITVIICNDPLILLRSWAKAQFAKHAPRTVAITGSVGKTSTKRAI 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+S         S+N  +G+ +T+A +     + + E G  H GEI  L  L  P I
Sbjct: 121 AQVLASRYSVLRSPRSFNADLGLSVTMAELAAQ-QWAVLEFGADHPGEIAQLCQLFPPEI 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++T +  AHL  F     IA  KA I + L   G   LN DD     +  ++HA     
Sbjct: 180 GIVTNVGSAHLGAFGSQAAIAHEKAAIIQQLPAHGYAILNGDDPLVAAMAERTHA----R 235

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHMAQNMLMTLGIVSI 305
           +   G++   + +        + +   + +   + E       G    Q     + +  +
Sbjct: 236 LLRVGQNAACEIRWGNVTSTVQSTQFTIHIPEHAPECIQLLASGVPSVQAAAFAIAVGYV 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +    +AL+   P  GR       + +   T+ID+++NA P S+ AA+  L  +  
Sbjct: 296 AGLSLAEMREALADLRPAHGRFN---PLVGRNGATIIDDTFNAAPESVYAALQTLGSLPA 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---- 421
                RIA+LGDM E+G  S  FH    ++ +  +   +   G        +   +    
Sbjct: 353 RR---RIAILGDMAELGAASARFHQQAGQIAAQ-HADLLITKGDQAALAATSAREASATY 408

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              I+     +   +   + + L  GD+V+VK +       ++  LL 
Sbjct: 409 GYQINTMSVHSAAAVLAAVPTDLGAGDLVLVKGAAESRMEHVVAGLLA 456


>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
 gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
          Length = 825

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/466 (22%), Positives = 189/466 (40%), Gaps = 15/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           +++  ++L+ +   +   V    +  +S+DSRS+       FFA+KG ++DGHD++    
Sbjct: 10  MFSSKEILRILDCKA-CEVKDFEITEVSVDSRSVNKPESTLFFALKGINHDGHDYVEKLY 68

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           ++G    VV       +       F VD+VL AL +LA   R + KA ++ ITGS GKT 
Sbjct: 69  EQGVRNFVVTGLRAGFLPLSGANFFVVDEVLPALQQLAAWFRGQMKAEVVGITGSNGKTI 128

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KE L   LS     Y    SYN+ +GVPL+L  M V     I E G+S  GE+  L  +
Sbjct: 129 VKEWLYQLLSDEPGIYRSPRSYNSQVGVPLSLLGMDVSTRLAIIEAGISLPGEMGKLQAM 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +RP I + T +  AH  NF   ++  + KA +F              D     L+     
Sbjct: 189 IRPEIGIFTHLGDAHGENFESRQQKLAEKAILFRDCRCIIGREGEALDYIASRLR----- 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                   +G  KNA  ++ +    + +  + V  +  +  +          +N +  + 
Sbjct: 244 -PDVKKMIWGSGKNATVRVEEKGSTAHERLVAVGYEHVAFTLSIPFPDEASFENCMNAVC 302

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++ +         + ++   P      R           LI++ YN++ AS + A++ L+
Sbjct: 303 VLLLEGISPVFIAERVARLQPL---AMRMEIKDGINRCVLINDYYNSDAASFQLALNTLA 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                    ++ +L D  + G   +  + ++A +L    +S     G  +   K      
Sbjct: 360 M--QDAGREKVVILSDFVDTGTGERELYREVALLLRKAKVSLFIGIGEKLSRYKPYFL-V 416

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               + +  D              V+++K +    F  +   L ++
Sbjct: 417 PRCRFYKDTDSFLRQENREQFKDQVILIKGARKFRFEYIAGFLQKQ 462


>gi|255349153|ref|ZP_05381160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70]
 gi|255503690|ref|ZP_05382080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 70s]
 gi|255507370|ref|ZP_05383009.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525800|emb|CBJ15281.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis Sweden2]
 gi|296435378|gb|ADH17556.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/150]
          Length = 450

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI +A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|258546148|ref|ZP_05706382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518573|gb|EEV87432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 451

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 134/460 (29%), Positives = 200/460 (43%), Gaps = 29/460 (6%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL T  ++     G   G         +S DSR +   E F A++GP++ G DF+  A 
Sbjct: 8   TPL-TAAEIAALCDGVHHG--ADFTALDVSTDSRRLQAGELFIALRGPNFRGEDFLAAAK 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA   +V            +P   V D L AL  LA   R RS+A   AITGS GKT+
Sbjct: 65  GQGAVAAIV----AEYQPDADLPQIVVADTLAALQALARDRRERSQAQFFAITGSNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKE+L   L +  +T A +G+ NN IGVPLTL R+  +  + + E+G +H GEI  L  L
Sbjct: 121 TKEILQRLLQTRGQTLATLGNLNNDIGVPLTLLRLRDEDRYAVIEMGANHPGEIAALVAL 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +A+IT +APAHL+ F  +E + +AK+EI+   +              +L  A    
Sbjct: 181 ARPDVALITNVAPAHLAGFGTLEGVIAAKSEIYAHSD-------GAIVLNLDLPAAARWQ 233

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                   +  S N D  +      ++ S   +++ G    V    +G H   N L    
Sbjct: 234 DQFHDRPQYTFSLNIDADVTAHDLAADGSRFVLRVDGSDYPVAWQLVGRHNIMNALAACT 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +           L+         +    A+  G  T+ D++YNANPAS KAAI VL+
Sbjct: 294 AARLAGVSGAQMQATLTG----LALHQSRLAAIRVGAHTIYDDTYNANPASFKAAIDVLA 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                     + + G M E+G    + H D+A   +   IS  W  G  +     A    
Sbjct: 350 AAPQS-----LIIAGAMGELGAEEVALHHDVATYAATRGISAFWSVGDGL-----AQEYG 399

Query: 422 IHVHYSET-MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              H+++T   G  L    +     V++VK S S     +
Sbjct: 400 ADRHFADTASAGAALAAYLADAPATVILVKGSRSARMEGV 439


>gi|71275125|ref|ZP_00651412.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71900698|ref|ZP_00682821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|170731114|ref|YP_001776547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
 gi|71163934|gb|EAO13649.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Dixon]
 gi|71729519|gb|EAO31627.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|167965907|gb|ACA12917.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Xylella
           fastidiosa M12]
          Length = 468

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 120/469 (25%), Positives = 184/469 (39%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA 
Sbjct: 6   LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML
Sbjct: 64  GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                  A  S    YA  G+ NN IG+PL +   P + DF ++E+G   LG+I +LT +
Sbjct: 120 VSILEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKLGDIGYLTDI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A++  IAPAHL     +  +A  K EI     + G   +   D  F L   +   
Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    AD      +   +     +      + V     G H   N L    
Sbjct: 239 PAGCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +      L +     GR   +          LID+SYNANP S+  AI  L+
Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    VLGDM E+G    + H           ++ ++  G             
Sbjct: 356 T----ASGPGWLVLGDMRELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411

Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
              +     D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 412 --GYVFADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|300933358|ref|ZP_07148614.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Corynebacterium resistens DSM 45100]
          Length = 516

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 140/496 (28%), Positives = 205/496 (41%), Gaps = 38/496 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI-GIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L T   + +   G  + G  P   V G +  DSR I P   F A+ G   DGHD+  
Sbjct: 13  MIEL-TVGKIAEITGGELVDGADPDTKVLGPVEFDSRRIKPGGIFMALPGAQVDGHDYAA 71

Query: 59  H---------AVQK--GAGLVVVNTDMVASIGSLSIPVFGVD------DVLGALNKLAVA 101
                      V K  GA   +V   +     + +   F  D       VL A+++LA  
Sbjct: 72  SAAEQGAALLVVGKRVGAPA-LVAPSVELRQEASNASAFEHDTQGHGAAVLAAIDRLARF 130

Query: 102 ARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                      T++ +TGS GKT+TK+++   L     T A  GS+NN IG+P T  R  
Sbjct: 131 NTDALVAEHGMTVVGVTGSAGKTSTKDLIGAILREAGPTVAPPGSFNNEIGLPYTALRAE 190

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + + E+    +G IR LT +  P+I V+  +  AHL  F   + IA AK E+ E L
Sbjct: 191 EGTKYLVSEMSARGVGHIRHLTEVTPPNIGVVLNVGSAHLGEFGSRDAIAQAKGELVEAL 250

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS------- 270
            + G   LN DD     + A++HA  ++   S    + A  ++      S+         
Sbjct: 251 PENGLAVLNADDDKVAAMAARTHARVVRFSTSQETCEWAGREVAVDYYASDIQLDEVARA 310

Query: 271 -WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            +      G  + V     G H   N L    +            +AL+           
Sbjct: 311 RFALHHPYGDPVAVELGVFGAHQVSNALAAAAVGMECGMSATDVARALNGHVAASVNRMD 370

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG-RRIAVLGDMCEMGELSQSF 388
            R     G  T+I++SYNANP SM+A I  L+  +   +G    AVLG M E+G+ +   
Sbjct: 371 VRTRARDG-VTIINDSYNANPESMRAGIDALAYTASGRDGAESWAVLGQMGELGDDATEA 429

Query: 389 HIDLAEVLSLYNISHVWLSGF--HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           H DL   LS   I H  + G   +  AL  A     +  H  E  D    F+  SL   D
Sbjct: 430 HADLGHSLSQRRIRHAVIVGNGVNQQALAHAAREDGVDTHVVEDADAAVNFLDLSLRKSD 489

Query: 446 VVVVKSSNSCGFYRLI 461
           VV+VK+S S G + + 
Sbjct: 490 VVLVKASYSDGLWAVA 505


>gi|166154098|ref|YP_001654216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166154973|ref|YP_001653228.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335336|ref|ZP_07223580.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930086|emb|CAP03569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165930961|emb|CAP06523.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 450

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI +A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDTVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|326315566|ref|YP_004233238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323372402|gb|ADX44671.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 503

 Score =  190 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 114/481 (23%), Positives = 189/481 (39%), Gaps = 28/481 (5%)

Query: 2   NPLWTFHDL-----LQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
            P+ T          +  Q   +G     Q  +  +  D+R++   + F A++G  +D +
Sbjct: 4   TPMLTLQQAHALVQARIPQARLVGGPDALQLPLGRVHTDTRTLQAGDLFVALRGERFDAN 63

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +F+  A     G           + +  +P   V D L AL  LA   R R    +I +T
Sbjct: 64  EFLAQARA---GGAAAALAHPGRLEAAGLPGIEVPDTLAALGALAAGWRARLDLPLIGVT 120

Query: 115 GSVGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTT  +M             +A  G++NN IGVPL L R+    +  + ELGM+H 
Sbjct: 121 GSNGKTTVTQMTAAVLRAWKGDAAFATQGNFNNDIGVPLMLLRLRAAHEAAVIELGMNHP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GEI  L  + +P +A++      HL     +  +A     +   L   G      DD++ 
Sbjct: 181 GEIAVLAGIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVISALPAGGVAVFPADDAYA 240

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGY 290
            L +      G +   +FG    +   +R  +   E     V +       +      G 
Sbjct: 241 PLWR---GLAGARRCLAFGMEPGSAAGVRCTRAHWEAGAWNVHIDTPLGGFDGTVRIAGR 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDES 345
           H   N L          A +D   + L+ F P +GR + +     +        T +D++
Sbjct: 298 HNVANALAATACALAAGAPLDAIARGLAAFEPVKGRSRAFTAAVPQPGGGSRRITAVDDT 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YNANP SM AAI VL ++     G R+ V+GDM E+G+    FH +         I  ++
Sbjct: 358 YNANPDSMHAAIDVLGELP----GPRLLVMGDMGEVGDQGPQFHAEAGSHARDRGIERLF 413

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             G   +    A        + + M  L   ++ +      V+VK S      +++  L 
Sbjct: 414 ALGALGIHAVQAF--GPQARHFDDMASLLAAVREAAPSAGSVLVKGSRFMKMEQVVQALE 471

Query: 466 E 466
            
Sbjct: 472 A 472


>gi|71898206|ref|ZP_00680380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
 gi|71731945|gb|EAO34002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xylella
           fastidiosa Ann-1]
          Length = 468

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 119/469 (25%), Positives = 183/469 (39%), Gaps = 26/469 (5%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +     G+  G      V  I  D+R++     + A++G  +D H F   AV +GA 
Sbjct: 6   LSLIAYWTGGYLHG--EDVRVCAIGHDTRALDVGVLYVALRGQRFDAHLFCAEAVARGAA 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+      +  L +P   V D   AL  +A A +    + ++A+TGS GKT+ K ML
Sbjct: 64  GVLVDH----VLPELDVPQVVVADTERALAAIASALQRDRTSFVLALTGSNGKTSVKAML 119

Query: 127 -----TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                  A  S    YA  G+ NN IG+PL +   P + DF ++E+G    G+I +LT +
Sbjct: 120 VSILEHAAAQSSTVVYASSGNRNNEIGLPLAVIAAPDNADFAVYEMGAGKSGDIGYLTDI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V P +A++  IAPAHL     +  +A  K EI     + G   +   D  F L   +   
Sbjct: 180 VTPDVALVNNIAPAHLERMGSLLGVARTKGEI-YAALRPGGTAVINMDDAFALWFEQQCV 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +  FG    AD      +   +     +      + V     G H   N L    
Sbjct: 239 PASCAVLRFGLQATADVTAYSLQFSEDSVRFVLVTPQGEVPVCLALSGRHNVCNALAAAA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +    +      L +     GR   +          LID+SYNANP S+  AI  L+
Sbjct: 299 MALVAGIPLSQIAAGLGLARSVAGRQVAHALPGG---AVLIDDSYNANPGSLDVAIDTLT 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G    VLGDM E+G    + H           ++ ++  G             
Sbjct: 356 T----ASGPGWLVLGDMLELGLEGVALHAAAGRRARQAKVARLYALGELSAVAAREFGEG 411

Query: 422 IHVHYSETMDGLFLFIQSSL--VDGDV---VVVKSSNSCGFYRLINLLL 465
              +     D L   +   L  V G V   V+VK S      +++  LL
Sbjct: 412 --GYVFADHDALAAVLWDDLMHVPGGVPPRVLVKGSRGSAMDKIVGALL 458


>gi|282880769|ref|ZP_06289465.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
 gi|281305303|gb|EFA97367.1| alanine racemase [Prevotella timonensis CRIS 5C-B1]
          Length = 824

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 186/471 (39%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   ++  +++  I     G      +  +  DSRS+    +  FFA+K    DGH +I 
Sbjct: 1   MI--YSIEEVITQIGAQRYG-SKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYIS 57

Query: 59  HAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VV +  +             V +   AL +LA   R      I+ ITGS 
Sbjct: 58  ELYRRGVRNFVVSSVPVDYEHLYPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS          SYN+ +GV L++  +  +   GIFE G+S  GE+  
Sbjct: 118 GKTMVKEWLYQLLSPQFFVTRSPRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L H+++P IAV+T I  AH  NF+ +E+    K  +    +    +    DD   + +  
Sbjct: 178 LQHMIQPTIAVLTNIGDAHQENFASMEDKCREKMILL---KDAEILVYPADDPIIQKVVN 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            S   G K  +S        F ++  ++ +  + +               I      + +
Sbjct: 235 DSDLRGKKLAWSMSDKSAP-FYIKTVEKKATMTTITYVYHEHEDWFSIPFIDEASVADAI 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   +   +    + +    P      R      Q   TLI++SYN++  S+  A+
Sbjct: 294 ECAVVALEMGMSMSALDERMQQLEPV---AMRLEVKEGQHGCTLINDSYNSDINSLDIAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++        R  ++ D+ + G      + +++ +     +S +   G  + A ++ 
Sbjct: 351 DFMNRRPDQQNRSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNL 410

Query: 418 LPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +       +  T++      + + L   +V+++K +    F +L   L  +
Sbjct: 411 IEMPKKF-FFPTVEAFEKSEVFAQLH-DEVILLKGARRFNFDQLTERLERK 459


>gi|255532920|ref|YP_003093292.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter heparinus DSM 2366]
 gi|255345904|gb|ACU05230.1| alanine racemase [Pedobacter heparinus DSM 2366]
          Length = 817

 Score =  190 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 98/470 (20%), Positives = 196/470 (41%), Gaps = 19/470 (4%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFI 57
           M+ L +    +   +   +  +     ++ + IDSRS+       FFA+KG   DGH F+
Sbjct: 1   MSSLIYNIKHIAGILGIKNFEVQKDAIISKLVIDSRSVIDPDGSLFFALKGQR-DGHGFL 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A   G    V++      +      +  V DVL AL+ +A   R +    ++ ITGS 
Sbjct: 60  KDAYANGIRNFVISEAKYTRLFP-DANILLVQDVLLALHTIAKYNRNQYDLKVLGITGSN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   L++         S+N+ IGVPL++  +      GIFE G+S   E+  
Sbjct: 119 GKTIVKEWLYQLLAADHNIVRSPKSFNSQIGVPLSVWEITAIHTLGIFEAGISKTDEMDA 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P++ ++T +  AH   F  ++E    K ++F   +              + L  
Sbjct: 179 LASMIKPNVGILTNVGEAHAEGFVSLKEKLLEKLKLFNDADLFIYAPEYTAGLSTDDLPG 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K       T +S+ K + AD Q+   +    ++++    +G  +E +         +N +
Sbjct: 239 K-------TKFSWSKKQQADLQILFVEPIDGKNYIRADFKGIEIECLIPFSDQASVENGI 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +    +  L    +    A            R          ++ID+SY+A+ +S+  A+
Sbjct: 292 ICWATLLALGYTPEE---ADKRLEKLTRVSMRLELKNGINQCSVIDDSYSADISSLAIAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L+  + H +     +L D+ E G+ ++  + ++A +L   ++  +   G H+      
Sbjct: 349 DFLNLQNQHPKK--TLILSDIYETGKTNRVLYTEIAALLKQKHVDRLIGIGTHISESASL 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +   + E+         +   + + ++VK +    F R+  L+ ++
Sbjct: 407 F--DMEASFYESTQAFIDNFPALHFNNETILVKGARRFEFERISKLIAQK 454


>gi|320450516|ref|YP_004202612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
 gi|320150685|gb|ADW22063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           scotoductus SA-01]
          Length = 428

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 97/458 (21%), Positives = 174/458 (37%), Gaps = 42/458 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A  G          V  +  DSR   P   F A+ G    G +++  A  KGA
Sbjct: 10  TPEWVARATGGRLHPGG--KPVRDLHWDSRETTPGSLFVALPGQRVHGREYVDEARAKGA 67

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+ +    A+          V D   AL +L  A R      ++A+ GS GKTTTKE 
Sbjct: 68  HLVLSDRPGPAT--------VEVVDTHQALLRLGRALRELFPGQVVAVGGSSGKTTTKEA 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L       A  G+ N    +   L R+       + ELG+  +GE+  L  L RPH
Sbjct: 120 LAQGL----GFPAPPGNQNTAPPLARFLLRLDPQAPGCVVELGVDRVGEMAELMGLARPH 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  F  +E +   +A +                      +A       +
Sbjct: 176 LAVLTALGEEHLEAFGSLEGVVEEEAGLLSAP------------------QALVSLQAAE 217

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +  FG  +              ++   +  + +           +      +       
Sbjct: 218 VLERFGLGRGLPTYGFGEATFRGENLRLLLHESRFRYGALEVHIPYPGMGPALAALAALG 277

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   +    K ++                 +     ++++YNANP S+KA ++ L+    
Sbjct: 278 VAEMLGLNPKEVAERLAHLVLPPGRMERREKDGVVFLNDAYNANPLSVKAGLAWLALQP- 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GR+  VLG+M E+GE +   H+++A+  +   +  ++L G +  A       +    
Sbjct: 337 ---GRKWVVLGEMRELGEEALRLHLEVAQEAARLGLKPLYL-GPYAKAQASLGGEAAEG- 391

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               ++    +++  +  GD+V +K+S S G  R++ L
Sbjct: 392 ----LEEAVGWLKERVQPGDLVYLKASRSVGLERILEL 425


>gi|89255902|ref|YP_513264.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314390|ref|YP_763113.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501885|ref|YP_001427950.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167009667|ref|ZP_02274598.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254367259|ref|ZP_04983287.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953390|ref|ZP_06558011.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313394|ref|ZP_06804002.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|89143733|emb|CAJ78932.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129289|gb|ABI82476.1| UDP-N-acetylmuramyl pentapeptide synthase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253077|gb|EBA52171.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156252488|gb|ABU60994.1| UDP-N--acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 452

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F  I   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  ++L    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLLDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L       + + VK + S     ++  + E
Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEVVKFVKE 450


>gi|225619677|ref|YP_002720934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225214496|gb|ACN83230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 450

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 112/468 (23%), Positives = 199/468 (42%), Gaps = 32/468 (6%)

Query: 7   FHDLLQAI---QGHSIGIVPQGFVNG---ISIDSRS-IAPQEAFFAIKGPHYDGHDFILH 59
             D++             +    +N    IS DSR      + F AIKG  +DG+ F L 
Sbjct: 6   LKDIIAVTKELNSKCFKNIEDLNLNKELEISTDSRDNFDENKLFLAIKGEKFDGNKFALE 65

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
              KG    +++   +         VF  DD +    KLA   R R    +I+ITGS GK
Sbjct: 66  TYNKGCRYFILSDASIKL--PDDAVVFYADDTILFFIKLAREYRRRFNIPVISITGSCGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTKE+  + LS+  K     G+ NN IGVP T+  +    +  + E GM+H  E+  ++
Sbjct: 124 TTTKELTHLFLSTKYKALKTEGNLNNEIGVPKTIFNLDDSYEIAVIEAGMNHENELLRIS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +  +  +I  + P H++    IE IA AK+E+F    +     +N + +  ++L+ ++
Sbjct: 184 EAIEANTVIINNVEPVHIAYLGSIENIAYAKSELFNHTRENANAVINKNTNCIDILEKEA 243

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               IK I                K+  ++     +  G + +      G     N+L  
Sbjct: 244 SRNNIKNII-----------EADIKEIIKKDDNTFEYNGITFKHNLI--GDFNLHNVLSA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +   D+       +         K     +N     +I++ YN+NPA++    ++
Sbjct: 291 LKAAELYDVDLQKC----ADILITYESQKNRMQIINIKGCNVINDCYNSNPAAL---KNM 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDAL 418
           +  +S   E ++IAV+GDM E    + S+H D+ ++++   NI  V   G H   + D +
Sbjct: 344 IKFLSQRSESKKIAVIGDMLETETENSSYHKDIGKIINELKNIDTVIAVGKHSKDIYDTV 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +   +Y E        ++  L     +++K+S   GF  +I+ +  
Sbjct: 404 --NCEKYYFENAQSSVEKVKEFLKYDTAMLIKASLGMGFAVIIDSIKN 449


>gi|28493190|ref|NP_787351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
 gi|28572695|ref|NP_789475.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--
           D-alanyl-D-alanyl ligase [Tropheryma whipplei TW08/27]
 gi|28410827|emb|CAD67213.1| probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Tropheryma
           whipplei TW08/27]
 gi|28476231|gb|AAO44320.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Tropheryma
           whipplei str. Twist]
          Length = 464

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 134/470 (28%), Positives = 218/470 (46%), Gaps = 27/470 (5%)

Query: 8   HDLLQAIQGHSIGIVPQ---GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            D+ +   G             +NG + IDSR+I+  + F A  G  +DGH+F+  A Q 
Sbjct: 6   ADIQRVTGGILHNTSLSESLLPINGRLKIDSRNISQGDIFVAHTGTKFDGHEFLYQAKQS 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA L +V       +  + +P   V +V  A++ +A       R   T+I ITGS GKTT
Sbjct: 66  GASLAIVTR-----VQEIDLPQLLVGNVTEAMHAIAGFKLCLSRDTITVIGITGSNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK +L   LS    T A  G+ NN IG P+T++R+     + + E G    G+I  L  +
Sbjct: 121 TKSVLAYVLSKFGNTVATHGNQNNEIGFPITVSRIEPLTKYLVLEYGAFKPGDIDCLKKI 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+ +   AH+     +E + S KAE+   L +   + LNYDD     L      
Sbjct: 181 AVPDIAVLLSAGHAHVEKSGSLESVCSMKAELARDLPEGSKVLLNYDDPRIARL------ 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +   Y FG  K A F+    +    ++   V  Q  S+EV    IG H   N+L  L 
Sbjct: 235 -SVGNRYYFGTDKRAHFRASHVETNIIKTRFIVTYQKGSVEVETKLIGKHQVSNVLAALS 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + +L  D +   + +S  +P +GR +     +  G F++I ++YNA+  S+K A+  L 
Sbjct: 294 TLVLLGFDAEVCARYISEVNPIDGRMQY----IPLGDFSIIHDAYNASFESVKCALDSLV 349

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPR 420
            +      RRIAVLG + +MGEL+Q  +  L +     +I+ + +     +  +   L +
Sbjct: 350 VL-GSLAKRRIAVLGRIHDMGELAQDVYRQLVKQFLDTDINLLVIVSEKQMYLIAKELAK 408

Query: 421 S---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 + + E ++     I      GD+V+ K+SN+  F  L+  +  +
Sbjct: 409 GVPNKEIVWFEDLETAKHEIFDLFSPGDIVLFKASNAENFSSLVESVKHK 458


>gi|254368740|ref|ZP_04984753.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121661|gb|EDO65831.1| hypothetical protein FTAG_00538 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 452

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 109/471 (23%), Positives = 205/471 (43%), Gaps = 26/471 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L   IQ     +     +  ++I+S  +     F  I   + DGH+FI  A
Sbjct: 1   MIK--SLKQLA--IQAGLEYLGEDVSIQTVAINSNEVRQDCLFVTIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANGAKAILVSKKQ-----GLDIPQVVCGNTIKGLRTLAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S     ++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRATSNSYAFKIRIFSQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDK---LTLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  ++L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKIFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLE 466
            + +  Y E+ D L   +   L       + + VK + S     ++  + E
Sbjct: 400 SNQNAKYYESKDELNNDLAKILDEYKSQSIKLTVKGARSFKMEEIVKFVKE 450


>gi|313676511|ref|YP_004054507.1| alanine racemase [Marivirga tractuosa DSM 4126]
 gi|312943209|gb|ADR22399.1| alanine racemase [Marivirga tractuosa DSM 4126]
          Length = 821

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/457 (20%), Positives = 176/457 (38%), Gaps = 13/457 (2%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            + G    +     +  I IDSR+        F AIKG  +DGH+FI      G    ++
Sbjct: 11  ILNGEICQLQKDYTIENIFIDSRNAVSNIKNLFIAIKGERHDGHNFIADLYSNGIRNFII 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + ++           F  ++ + AL  LA   R   K  +I ITGS GKT  KE L   +
Sbjct: 71  DEEIKVDKYPE-ANFFKTENSINALQALAGYKRKNFKGNLIGITGSNGKTIVKEWLAKLI 129

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S+   Y    SYN+ +GVPL+L  +    D+ I E G+S +GE+  L  +++P I + T
Sbjct: 130 ESVYSVYRSPRSYNSQVGVPLSLWHLNHYQDYAIIEAGISKMGEMEKLEAIIKPKIGIYT 189

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AH   F  +EE A  KA++                  F  +    H+L       F
Sbjct: 190 NLGTAHDEGFPSLEEKAHQKAQL------FKDSSTIIFCKDFPEISNALHSLPKLEEKEF 243

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 D     + +   ++           +     + +    ++      + +L  + 
Sbjct: 244 IGWSFEDNTSNYFVETEGRNNGTAIRIPFEEQFHIFQVPFQDYASLENITHCLLLLLHEG 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  +  +  +    R      +    L+D+SYN +   +  A+   SQ     +  
Sbjct: 304 LPIKVIQNTLNDIKSLNMRLETKKGKNSTYLVDDSYNNDLVGLDTALQFFSQQKQFQKR- 362

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I +L D+ E G  S+  +  LA+ ++L  ++ V   G  +  L+      + +      
Sbjct: 363 -ILILSDLLETGLSSEVLYQQLADRIALEKLNLVVGIGSEIRMLEKFYTSDLKL--FPNT 419

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                + + +     ++++K +    F  ++  L ++
Sbjct: 420 ASFLEYEKENSFQESLILIKGARKFNFESIVQRLEQK 456


>gi|294791082|ref|ZP_06756240.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
 gi|294458979|gb|EFG27332.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Scardovia inopinata F0304]
          Length = 524

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/516 (24%), Positives = 197/516 (38%), Gaps = 60/516 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ-----------GFVNGISIDSRSIAPQEAFFAIKGP 49
           M  L +     Q +    +                  +  +  DSR ++    F AIKG 
Sbjct: 1   MIAL-SVFQAAQILSATLVSSPSDSSQAGDRSDSSTKITSVVTDSRQVSEGSLFVAIKGE 59

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA---ARLRS 106
             DGHD++  A + GA   +V   +  ++    +P   V D +G+L +LA      R + 
Sbjct: 60  RVDGHDYVNQAARAGACAALVEHPVEGAV----LPQLVVTDTIGSLGRLARYNISRRRQI 115

Query: 107 ------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                   T++ ITGSVGKTTTK+++   L +   T A +GS+NN IG+PLT  ++    
Sbjct: 116 ALAEGKDFTVVGITGSVGKTTTKDLVKDLLQTAGTTIAPVGSFNNEIGLPLTAVKVDETT 175

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+G S  GEI +LT LV P IAV   +  AHL  F  ++ I  AK+E+ + L   
Sbjct: 176 RYFVAEMGASAAGEIAYLTRLVPPDIAVELKVGAAHLGGFGSVDGIRQAKSELVQALTSQ 235

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTI-------------YSFGKSKNADFQLRKWKQCS 267
           G   LN  D    L+   +HA  +                        A    +  +   
Sbjct: 236 GIAVLNAQDPNIRLMTGSTHASTLVWFSDGRIDPQNLPGDSRKQIFIYATDTRQDQEDHP 295

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +     L G  + +   G+   M     +++     +      ++             
Sbjct: 296 SFTLHLPDLPGIPVTLGLSGVHNVMNALAAVSVAYCLGVRPQTIASVLFNHKAMSPHRMA 355

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR---RIAVLGDMCEMGEL 384
                      FTLID+S+NANP SMKA +  LS       G    +IAVLG M E+G  
Sbjct: 356 VSLVTLTAGESFTLIDDSFNANPDSMKAGLDALSGWKSAESGNEPVKIAVLGSMLELGPR 415

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS----------------IHVHYSE 428
            +  H  L    +     +V   G       D L  +                +  +   
Sbjct: 416 EEDLHHSLGAYAAQS-ADYVVTVGSETDDHLDTLASALCQGACQRAEQSPVRLLKAYEEH 474

Query: 429 TMDGLFLFIQSSLV--DGDVVVVKSSNSCGFYRLIN 462
           +       +        G VV++K S++ G   L N
Sbjct: 475 SAGQAATRVAQLARQNPGSVVLLKGSHASGLQTLAN 510


>gi|328955353|ref|YP_004372686.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
 gi|328455677|gb|AEB06871.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Coriobacterium glomerans PW2]
          Length = 478

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 123/481 (25%), Positives = 188/481 (39%), Gaps = 25/481 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  D+                  G  IDSR +     F A  G H DG+DF + A
Sbjct: 1   MIEI-TAADMTAITGSRLCAGPSDRVCRGCVIDSRDVGSDAVFVAFPGEHVDGNDFAIAA 59

Query: 61  VQKGAGLV-VV---NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           VQ GAG V +    + ++ ++       V   +D    L  LA   R R    ++ ITGS
Sbjct: 60  VQAGAGAVVLTREPSRELCSAADQRGCAVAYTNDAERFLLALAHDYRSRLGCPVVGITGS 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           +GKTTTK+M+   LS+  + +A IG+ NN IG+PLT+   P D    I E+GMS  GEI 
Sbjct: 120 IGKTTTKDMVAALLSTRYRVHATIGNRNNLIGMPLTVLSAPEDTQALILEMGMSASGEIE 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+    P  A+IT I  +H+      + IA AKAEI  G            +    L+ 
Sbjct: 180 RLSRCAAPTHAIITRIGTSHIGMLGSRDAIARAKAEIVSG---MIPWSAPECERSPLLVL 236

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +            F +       L   +  ++ +    +L  +                 
Sbjct: 237 SSEDDFTSFISDRFAEPAGVRIALAGTRADADVTVRRCRLDDQGCASFELSFRDGCQLKA 296

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG----------KRYRCALNQGFFTLIDESY 346
            +       +      A  A  +                   R +  L  G   +ID+SY
Sbjct: 297 NLAAPGAHAVQDAALAAALAYDLGVSPRDMIAAFGALAITSHRQQIRLASGGAKIIDDSY 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA+P SM A + +L  +S       IAVLG+M E+GE S+  H  +    +   +  +  
Sbjct: 357 NASPESMAAGLDLLLALSGARRR--IAVLGEMGELGERSERMHALVGAYAAAKQLDLLVC 414

Query: 407 SG-FHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            G      + DA       +  +  + +   +     S L  GD+V+VK S   G  R +
Sbjct: 415 VGHEAARTMADAARLMGMPAHRIEIASSAHAVLDRFGSGLGRGDLVLVKGSRFVGLDRFV 474

Query: 462 N 462
            
Sbjct: 475 E 475


>gi|296439095|gb|ADH21248.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis E/11023]
          Length = 450

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRMSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFHGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAAERFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI +A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAVARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|325103723|ref|YP_004273377.1| alanine racemase [Pedobacter saltans DSM 12145]
 gi|324972571|gb|ADY51555.1| alanine racemase [Pedobacter saltans DSM 12145]
          Length = 818

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/465 (20%), Positives = 175/465 (37%), Gaps = 20/465 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           ++   +   I   S    P   ++ +  DSR +       FF +KG   + H +I     
Sbjct: 6   YSIEQISALISEKSSLPFPNQVIHRLLTDSRKVTETKNTLFFVLKG-RKNAHHYIKDLYH 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG    V                    D L AL  LA   R +    +I ITGS GKT  
Sbjct: 65  KGVRSFVYYDQGFDITNFPDANFLYSPDPLRALQNLAAVHRGKFSFPVIGITGSNGKTVV 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L+          SYN+ IGVPL++ +M    +  IFE G+S  GE+  L  ++
Sbjct: 125 KEWLYQLLAYKYTIVRSPKSYNSQIGVPLSIWKMDTLYNLAIFEAGISQTGEMERLEKII 184

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P I V T I  +H   FS  EE  + K ++F  + K                 ++    
Sbjct: 185 KPSIGVFTNIGSSHDEGFSDKEEKIAEKFKLFAHVNKLICNKEF----------SEYAPQ 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +           A+  +++       + ++   + + + +          +N +  L +
Sbjct: 235 SVDLYTWSLDDNTANLYVKEISVEDTGTSIKSTYEDREISIKIPFKDKASTENAITCLLV 294

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +           +S  HP      R          ++ID+SYN++ +S++ A+  L+ 
Sbjct: 295 MLVFGYSESEIEDKMSKLHPV---KMRLEMKSGINNTSIIDDSYNSDLSSLEIALDFLNH 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
              H       +L D+ + G   Q  +  +A +L    +  V   G  +   ++    + 
Sbjct: 352 QQQHQNK--TLILSDIQQSGLDGQQLYQTVARLLESKGVDKVIGIGEEISKHQNLFGSNS 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +          +  S    + +++K + + GF ++ + L ++
Sbjct: 410 S--FFSDTSNFLDKLDLSAFRDETILLKGARTFGFEKISSALSQQ 452


>gi|291288107|ref|YP_003504923.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885267|gb|ADD68967.1| Mur ligase middle domain protein [Denitrovibrio acetiphilus DSM
           12809]
          Length = 452

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 114/462 (24%), Positives = 184/462 (39%), Gaps = 19/462 (4%)

Query: 7   FHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               + A+ G     +     +    IDSR       F A KG   DG+ +    +Q GA
Sbjct: 3   VTQAINAMGGVLRSHVQDDQQIRNFVIDSRQSRKGSCFVAFKGEKTDGNRYAEAVLQSGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V+V  + V      +     V D L AL  L      R K   IA+TGSVGKTTTKE+
Sbjct: 63  CMVIVTDEDVYEQIEGNK--VLVADALYALKDLGAYNLGRYKGRKIALTGSVGKTTTKEL 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L + K+ Y   G++NN +GV +  A M +   + +FE+G +  GEI  L+  ++P 
Sbjct: 121 ISEVLRTRKRVYTAYGNFNNELGVAICAANMKMGTSYSVFEMGTNSAGEIEALSKYIKPD 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T I  AH+  F GIE +A  K  I  G++K G ++                     
Sbjct: 181 ICVVTGIGHAHIGRFEGIEGLAKEKLSIVSGMQKRGVLY---IADSCRRFVTSEVLEKTD 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y      +        +      +     +        +    H   N L  + I   
Sbjct: 238 VRYFGTDMASHIILGDVNRTVDGDFYFTAVTRNTPYCFKLNHFYSHFVNNSLPAIAIGMA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                   +K +  F PK+GRG+            +ID++YNA   S+ +A++ L+ I  
Sbjct: 298 AGLSYTDVMKGIRKFQPKDGRGRIKEVDG----IKVIDDTYNAGFESVISAMTNLAGIPV 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
             +    A +G+M E+    +  +  L +  S          G +         R+ ++ 
Sbjct: 354 EKK---TAFIGEMGEIEGYEEMLYFKLMKKASELTNVEFVFVGKNFAR----FERTGNIK 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +T +     I   +  G  V+ K+S    F  LI  L EE
Sbjct: 407 VVQTREEAMQLISK-VSCG-TVLFKASRGQKFEELIRHLEEE 446


>gi|258654054|ref|YP_003203210.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
 gi|258557279|gb|ACV80221.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Nakamurella
           multipartita DSM 44233]
          Length = 510

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 187/503 (37%), Gaps = 48/503 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +   I            V+ +  D+R I P   F A++G   DGHDF   A
Sbjct: 1   MIAL-TLAQIADEIGVPVPAGAADVLVSSVEFDTRRIRPGALFVALRGERVDGHDFAATA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDD-----------VLGALNKLAVAARLRSKAT 109
              GA  V+ +  + A      +P+  V D              A   +    R      
Sbjct: 60  AAAGAVAVLGSAPVSAP-----LPLLQVPDRPDNAGVLDALAALARASVTALVRE-HGLQ 113

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-----KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           ++ +TGS GKT+TK+++   L ++      +  A   S+NN +G P T  R      F +
Sbjct: 114 VVGVTGSSGKTSTKDLIAAVLRAVPGTGPERVIAPPESFNNELGHPYTALRADESTAFLV 173

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK---TG 221
            EL     G I  L  +    I  +  +  AHL  F  +E IA AK+E+ + L       
Sbjct: 174 LELSARGAGHIAALARVAPLRIGAVLNVGSAHLGEFGSVEAIAQAKSELVQSLPPAGAQP 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKS 280
                   +  + L A    L    +   G    A  +     +  ++++   +     S
Sbjct: 234 LTGGVAILNADDALVAAMAELTAAEVVMVGTGAAAQVRATDVGQDDADRARFTLVTPEGS 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G H   N L    +   +        +ALS   P            N    T
Sbjct: 294 APVTLRVVGAHQIGNALTAAAVGRAVGLGPQAIARALSQAEPASRWRMEVTELANGV--T 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           LI+++YNANP SMKAA+  LS I      R  AVLG+M E+G+ + + H  +  ++    
Sbjct: 352 LINDAYNANPHSMKAALHSLSTI--GRGRRTWAVLGEMAELGDEATAAHDQIGRLVVRLG 409

Query: 401 ISHVWLSG---------------FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD 443
           +  + +                    L L   L             +D     +   L  
Sbjct: 410 VDRLLVVEGPGAATGAAVGGRTAPRALHLGAHLEGSWGGESELVPDVDDAVAILLDELEP 469

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GDVV+VK+S S G  R+   L+E
Sbjct: 470 GDVVLVKASRSAGLERVALRLIE 492


>gi|282859438|ref|ZP_06268543.1| alanine racemase [Prevotella bivia JCVIHMP010]
 gi|282587666|gb|EFB92866.1| alanine racemase [Prevotella bivia JCVIHMP010]
          Length = 826

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/471 (23%), Positives = 188/471 (39%), Gaps = 14/471 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  ++   +   +     G V +  ++ +  DSRS+    +  FFA+K    DG+ +I 
Sbjct: 1   MN--YSIEKVATLVGACRYGNV-ETNISFLLTDSRSLCFPEETLFFALKSERNDGYHYIP 57

Query: 59  HAVQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
               +G    VV                  V   + AL +LA   R      +I ITGS 
Sbjct: 58  ELYSRGVRNFVVEAIPENWDMLYPQSNFLEVSKTIEALQRLATCHRAEFHVPVIGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L   LS  K       SYN+ IGVPL++  +    + G+FE G+S  GE++ 
Sbjct: 118 GKTVVKEWLYQLLSPNKVVTRSPRSYNSQIGVPLSVWLLNEQTEVGVFEAGISERGEMKA 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I V T++  AH  NF+ +EE    K  +F             D+        
Sbjct: 178 LREIIQPTIGVFTSLGEAHQENFASLEEKCMEKLCLFRDTNAIVYPL---DEELVVRCIK 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +       +S   S    F     K     +   V  QGK        I     +N +
Sbjct: 235 TLNYKNTILGWSKKDSNATLFVKEIKKAELTTTITYVWQQGKEASYTIPFIDDASVENSI 294

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            +  I   L  +V T  + +    P      R      Q   TLI++SYN++  S+  A+
Sbjct: 295 TSAIICLHLGVEVKTLAERMPQLEPV---AMRLEVKEGQHGCTLINDSYNSDFNSLDIAL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +++   H   +R  +L D+ + GE  ++ +  +A +     +      G  ++  + A
Sbjct: 352 DFMNRRPDHKGRKRTLILSDIFQSGEDEKTLYQRVAFLAEKRGVEKFIGIGEGLIRQRKA 411

Query: 418 LPRSIHVHYSETMDGLF-LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    ++  T+           L   +V+++K +   GF +L  LL+ +
Sbjct: 412 FNKFGKKYFFATVGSFISSEAFRELR-DEVILLKGARQFGFDQLTELLVNK 461


>gi|254468675|ref|ZP_05082081.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
 gi|207087485|gb|EDZ64768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [beta
           proteobacterium KB13]
          Length = 451

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/441 (27%), Positives = 207/441 (46%), Gaps = 23/441 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           + ++ DSR+    E F A++G  +DG +FI   +++     + N +        +     
Sbjct: 27  SDVNTDSRTFKDNEIFLALEGDKFDGSNFIDDVLKQKPLFFITNKEQ-----KYNARYAV 81

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---ACIGSYN 144
           V+     L +L+     +   T +AITGS GKTTTK+++   L +           G+YN
Sbjct: 82  VESGKKFLIELSKLILKKLSLTKVAITGSNGKTTTKDLIVHFLKNKFNDDAVLFTKGNYN 141

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IG+PL++ +      F +FE+G +H GEI  L  ++RP+I++IT I  AH+ NF   E
Sbjct: 142 NEIGLPLSILQSQGVEKFAVFEIGTNHPGEIIHLADIIRPNISIITNIGDAHIGNFGSKE 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +IA  K +IF  L+      LN DD +F++L             +F  S N D       
Sbjct: 202 KIAEEKKQIFNFLKTNELKILNKDDEYFQIL-------NQSPGKTFCISNNNDDSDVLSF 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  E + +E+  + +S+++     G H  QN  +    +  +  D     K         
Sbjct: 255 KSCELNMIELTHKFQSIKIKFQLTGQHNLQNFAIACAALINIGIDFQELEKYFGNLESTN 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR K+Y    N     LID+SYN+NP+S+ +AI  L+      E  +I ++GDM E+G+L
Sbjct: 315 GRFKKYIFKDNIE---LIDDSYNSNPSSLISAIDHLN----QSEKNKILIIGDMGELGQL 367

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +  +H+ + E +    I+ V   G    A       ++ +    T + L      ++   
Sbjct: 368 TDQYHLQIIEEILKTKINIVLTMGKAFKAAIKKNNENL-ILNFSTYEDLLDKALPAIKKD 426

Query: 445 DVVVVKSSNSCGFYRLINLLL 465
            +++VK+S   GF  +++ L 
Sbjct: 427 TIILVKASRFMGFENIVSQLK 447


>gi|183983187|ref|YP_001851478.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
 gi|183176513|gb|ACC41623.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium marinum M]
          Length = 525

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/504 (24%), Positives = 203/504 (40%), Gaps = 51/504 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +T  ++ + + G  + I PQ      V G +  DSR++ P   F A+ G   DGHD    
Sbjct: 4   YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAS 63

Query: 60  AVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106
           AV             G   +VV+ +   +  +L+  +    D  GA    A+A   ++  
Sbjct: 64  AVAAGAVAVLAARPVGVPAIVVSPEPDVTADALTGVLEHDADGSGAAVLAALAKLAKAVA 123

Query: 107 ------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                   TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     
Sbjct: 124 AELVAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATRGT 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +
Sbjct: 184 DYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQTKSELPQAVPAS 243

Query: 221 GTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQ 275
           G + LN DD     +      +   +G  T    G +   D            +    + 
Sbjct: 244 GVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVSLDRLARPQFTMH 303

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + +V     G H   N L    +     A V     AL+   P      R + +  
Sbjct: 304 AGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPV--SRHRMQVSTR 361

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEGRRIAVLGDMCEM 381
               T+ID++YNANP SM+A +  L+ I+                   R  AVLG+M E+
Sbjct: 362 PDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSRRSWAVLGEMAEL 421

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFL 435
           G  + + H  +  +    ++S + + G    + A+                    D    
Sbjct: 422 GADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAMYHGAVMEGSWGTEAVSVPDRDAALA 481

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYR 459
            +++ +  GDVV++K+SNS G   
Sbjct: 482 LLRAEIQPGDVVLIKASNSAGLGE 505


>gi|124515892|gb|EAY57401.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Leptospirillum rubarum]
          Length = 495

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 174/471 (36%), Gaps = 45/471 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                  G+S D+R + P   F A++G  +DGHD++  A +KGA   +V+  + A+    
Sbjct: 28  PDDTPFAGVSTDTRDLRPDMLFVALRGDAFDGHDYVGEAFRKGARAALVSRSVEATG--- 84

Query: 82  SIPVFGVDDVLGALNKLAV-AARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             P+  V D   AL  LA    R R      ++ +TG+ GKTTT+E+L + LS+  ++ +
Sbjct: 85  --PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSAEGRRPH 142

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP TL          + E+G+   G++ +L+ ++    +++T++   HL
Sbjct: 143 TNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMDYLSSVLVSDASIVTSVGEGHL 202

Query: 198 SNFSGIEEIASA-----KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
                +E +              G        L    +     + +     ++     G 
Sbjct: 203 ETLGSVEGVWKEKSHLLNWVRPGGAIVLPLDLLFRYPASPVFRERQRRFFFVELDPDPGD 262

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S      + +       +  + +     +        +        ++  +  L A    
Sbjct: 263 SARGPRSVPEGSTILTGTLRKEEGGKWILSGTTGPESFSWKMPSPSSILAMDALLALAAG 322

Query: 313 AIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +S+                 +         L+ + YN+NP S++ A    +++   
Sbjct: 323 NALGVSLQEGANHLENFSPLPGRMQEKRTPEGALLLLDHYNSNPLSLRGAFQWCAEVWKK 382

Query: 367 -------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                    G+ +AVLGDM E+GE S   H +   + +    S ++  G      ++   
Sbjct: 383 EATLSRGEPGKLLAVLGDMLELGEDSPRLHREAGRIAAETPFSAIFYKGDFFQEFREGYL 442

Query: 420 RSIHVHYSETMDGLFLF-----------IQSSLVDGDVVVVKSSNSCGFYR 459
                      +   L            +   L  GDVV++K S      +
Sbjct: 443 SGKG-------EEARLVPLSGPPSSGQGVFPILTRGDVVLIKGSRGMHLEQ 486


>gi|226226830|ref|YP_002760936.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090021|dbj|BAH38466.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 474

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/465 (25%), Positives = 191/465 (41%), Gaps = 27/465 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WTF  +  A+     G      + GIS D+R IA  + F A++G  +D HDF+  A   G
Sbjct: 26  WTFERVAAALG---TGPSMPQPLAGISTDTRRIARGDVFVALRGDRFDAHDFLATAKDAG 82

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   VV+    A    L +P + V D L AL +LA   R      +IA+ GS GKT+TKE
Sbjct: 83  AAAFVVSDATRA--VGLGVPTYVVPDTLIALGQLAHTWRTVWGRHVIAVAGSNGKTSTKE 140

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L  ALS   + +A  G+ NN IGVPLTL  +P   D  + ELG +  GE+  L  +  P
Sbjct: 141 LLKAALSGTFEVHATTGNLNNLIGVPLTLLAIPPHADIAVVELGTNAPGEVATLRAMSAP 200

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AV+T+I   HL     +  +   + ++F G+        + + S     +A++     
Sbjct: 201 DVAVLTSIGEEHLEGLGDLAGVLREECDVFPGVRLAIIPVAHPEVSPMASERAEAVVTAG 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T       +       +     +     + L+G                  +       
Sbjct: 261 LTDADVAPEQWGLDDEGRPWFDVDGVHFTLPLRGAHQAANAMLAVAAARACGVPLESAA- 319

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      A     P       +         T+I+++YNANP SM+AA+++L    
Sbjct: 320 -----------AGMAAMPVPNMRGVWETIG---QTTVINDAYNANPPSMRAALALLD--R 363

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
                +R+A LG M E+G  +   H D+A    + +   +   G    A +   P +I  
Sbjct: 364 VGEGRQRVAFLGTMRELGAQADVQHDDIARAALVSSADVIVGVGAFGDAFRRVAPDAINA 423

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               V  ++  +  +      +    V+++K+S      RL+  L
Sbjct: 424 ASGRVIVADEPESAWTAAAPRVNRNAVILLKASRGVRLERLLPQL 468


>gi|241765146|ref|ZP_04763134.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
 gi|241365225|gb|EER60072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Acidovorax
           delafieldii 2AN]
          Length = 475

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/466 (23%), Positives = 188/466 (40%), Gaps = 22/466 (4%)

Query: 4   LWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           +         + ++I    +       V  +  D+R++   + F A+KG  +D + F+  
Sbjct: 3   MMNLQQAHAWICRSIPEARLVGDAATPVARVHTDTRTLQAGDLFVALKGERFDANAFLAD 62

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A   GA   + +      + +  +P   V D L AL  LA   R +    +I ITGS GK
Sbjct: 63  ARAGGAVAAIAH----GGLEAAGLPGIEVPDSLAALGALAAGWRAQFGLPLIGITGSNGK 118

Query: 120 TTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           TT  +M+         +  ++  G++NN IGVPLTL R+       + E+GM+H GEI  
Sbjct: 119 TTVTQMVASILRAWKGEAAFSTQGNFNNDIGVPLTLLRLRAAHAAAVIEMGMNHPGEIAT 178

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P +A++      HL     +  +A     +   L   G       D +  L  A
Sbjct: 179 LAAIAQPTVALVNNAQREHLEFMHTVRAVAEENGSVLAALPADGVAVFPAGDPYSALWGA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +      T  + G     D +  +         +E+     ++       G H   N L
Sbjct: 239 LAAPRRCVTFGAGG-----DVRCAQASWRQGAWAVEMVTPLGALSCSLQIAGQHNVTNAL 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                     A +++  + LS F P +GR +     +     T++D+SYNANP SM+AAI
Sbjct: 294 AAAACALAAGAPLESIARGLSAFTPVKGRSRAIGLRVADRQVTVVDDSYNANPDSMRAAI 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL+ +       ++ V+GDM E+G+    FH +         I H++  G        A
Sbjct: 354 DVLASLPA----PQLLVMGDMGEVGDQGPQFHAEAGAHARAAGIRHLYALGEQSAGAARA 409

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              + H +   ++    L     +     V+VK S      +++  
Sbjct: 410 FGAARHFNDMASLQAAVLQALPRVGS---VLVKGSRFMKMEQVVEA 452


>gi|325203523|gb|ADY98976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neisseria meningitidis M01-240355]
          Length = 436

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 197/451 (43%), Gaps = 22/451 (4%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V+ I  DSR     + FFA+ G  +D HDF+   +  GA  VVV+ +   ++   
Sbjct: 3   SESKLVSRIVTDSRDSRAGDVFFALAGGRFDAHDFVEDVLAAGAAAVVVSREDCVAMDGA 62

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---A 138
                 VDD L AL  LA A R      +  ITGS GKTT KEML   L          A
Sbjct: 63  ----LKVDDTLTALQMLAKAWRDNVNPFVFGITGSGGKTTVKEMLAAVLRRRFGDDAVLA 118

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             G++NNHIG+PLTL ++     + + E+GM+H GE+  LT + +P  A++  +  AH+ 
Sbjct: 119 TAGNFNNHIGLPLTLLKLNEKHRYAVIEMGMNHFGELAVLTQIAKPDAALVNNVLRAHVG 178

Query: 199 N-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F G+ +IA AK+EI++GL   G   +  +D+   + K  +  L  +T        + D
Sbjct: 179 CGFDGVGDIAKAKSEIYQGLCSDGMALIPQEDANMAVFKTATLNLNTRTFG----VDSGD 234

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                          ++    +   VV    G H   N      +       ++   + L
Sbjct: 235 VHAENIVLKPLSCEFDLVCGDERAAVVLPVPGRHNVHNAAAAAALALAAGLSLNDVAEGL 294

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             F   +GR             TLID++YNANP SMKAAI VL+++       RI V+GD
Sbjct: 295 QGFSNIKGRLN---VKSGIKGATLIDDTYNANPDSMKAAIDVLARMPA----PRIFVMGD 347

Query: 378 MCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
           M E+GE  + + H ++        I   +  G + +   +         +    D L   
Sbjct: 348 MGELGEDEAAAMHAEVGAYARDQGIEAAYFVGDNSVEAAEKF--GADGLWFAAKDPLIQV 405

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           ++  L +   V+VK S       ++  L ++
Sbjct: 406 LRHDLPERATVLVKGSRFMQMEEVVEALEDK 436


>gi|328950954|ref|YP_004368289.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451278|gb|AEB12179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 427

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/433 (22%), Positives = 170/433 (39%), Gaps = 41/433 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P  AF A+ G    G+ FI  AV +GA  V+ +     +          V 
Sbjct: 30  LVWDSRQVTPGAAFVALPGTRTHGNAFIEDAVARGAAFVLTDRPHPKA--------VQVQ 81

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL +L  A R R    ++ +TGSVGKTTTKE L   L       A  G+ N    +
Sbjct: 82  DPWQALLRLGRALRDRFPGPVVGVTGSVGKTTTKEALAQGL----AWPAPEGNLNTPPAL 137

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +P      + ELG+  +GE++ L  L +P I V+T IAPAHL     +E +A  
Sbjct: 138 ARFFLHLPPQAPGAVVELGIDRVGEMQELVFLAQPTIGVLTAIAPAHLEALGSLEVVARE 197

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+++ +                   ++      G              FQ R      E 
Sbjct: 198 KSQLLQASRVRIASTQAARYLSLPEVRTYGFEEGT-------------FQGRDLTITPEG 244

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +      +   +                +       +   +   +  +            
Sbjct: 245 TRFRYGQRTLHLPYP--------GYGPALGALAALAVAEVLGQDLDQVCQHLEALRLPPG 296

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +G    I ++YNANPAS++A +  L +      GR+I VLG M E+G  ++++H
Sbjct: 297 RMHLVRRGGVLFIHDAYNANPASVRAGLESLDRFP----GRKIVVLGTMKELGPQAEAYH 352

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ A + +      V+  G +   +      ++ V      +     +++ +  GDV+ +
Sbjct: 353 LEAARLAARVAQRAVF-VGEYAPQMARLFEGALAVT---DAETARQALKAQVRPGDVIYL 408

Query: 450 KSSNSCGFYRLIN 462
           K+S + G  R++ 
Sbjct: 409 KASRAVGLERVLE 421


>gi|148257423|ref|YP_001242008.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409596|gb|ABQ38102.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 458

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 135/486 (27%), Positives = 198/486 (40%), Gaps = 46/486 (9%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP---------- 49
           M   LWT  ++ +A+     G  P+  ++ ++ DSR++ P   F A+ G           
Sbjct: 1   MTKALWTVAEVARALG--LAGDYPETPIDLVTQDSRAVKPGSLFVALSGTPSGGFVSSFA 58

Query: 50  -HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSK 107
              DG +F  +A Q GA  ++V       I  +S+P   V D L   L  LA AAR R  
Sbjct: 59  SSRDGWEFAANAEQAGAVAMIV----PHRIDGISVPQLVVPDTLIDGLWALARAARARFH 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +I +TGS GKT+TKE +     +     A   S+NN  GVPLTL          + E+
Sbjct: 115 GPVIGLTGSAGKTSTKEFIAAYPGAS----ASPSSFNNFWGVPLTLCNADPSASVWVVEM 170

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           GM+  GEI  LT L +P +A++  + P HL     +E I   K  I  GL   G      
Sbjct: 171 GMNQQGEIARLTELSQPTVALVVNVQPVHLEKLGSLEAIRKEKVSIARGLPSDGI----- 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                 L+     A              AD          E   +   + G+ +      
Sbjct: 226 ------LVLPVDLAAPEWPGRVLRFGAGADVHAMSQVPAGESWDVTADIAGRHLAFSLTP 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              H   N L  L  V+    D       L+    + G           G   LID+S+N
Sbjct: 280 GAPHRLHNALAALASVAAAGLDPVL----LARELGEVGIMTGRGVEQRIGEIVLIDDSFN 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NPASM AA+  L        GRRIAV+GDM E+G+ + ++H D+   +    I  V+  
Sbjct: 336 GNPASMAAALDSLQARPVR--GRRIAVIGDMLELGDEAPAYHADMVGHV--TGIDGVYCV 391

Query: 408 GFHVLALKDALPRSIHVHYSETMDGL-FLFIQSSLVDGDVVVVKSSNSCGFY--RLINLL 464
           G  +  L + LP    + + E    L    + + L   DVVV+K S    F+  + +  L
Sbjct: 392 GPLMRHLFEKLPPEKRLGWHEDPATLDASQVAALLAPDDVVVIKGSKKI-FWVNKFVQKL 450

Query: 465 LEEFPA 470
                A
Sbjct: 451 AAALQA 456


>gi|294787089|ref|ZP_06752343.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315226742|ref|ZP_07868530.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
 gi|294485922|gb|EFG33556.1| probable UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens F0305]
 gi|315120874|gb|EFT84006.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Parascardovia denticolens DSM 10105]
          Length = 525

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 130/524 (24%), Positives = 200/524 (38%), Gaps = 67/524 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M  + T  +  QA+ G  +        I  Q  V+    DSR + P   F AIKG   DG
Sbjct: 1   MISM-TLAETAQAMSGKLLVFESASASIDSQAQVDSAVTDSRQVRPGSLFVAIKGERVDG 59

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--------- 104
           H ++  A         V   +   +   S+P   V+D + AL  LA              
Sbjct: 60  HAYLEQAA----AAGAVAAVVDHEVAGASLPQILVEDTVRALGFLARHNIEKRRSLAGQA 115

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R+  TI+ ITGSVGKTTTK+++   LS +  T A  GS+NN IG+PLT  ++  +  F +
Sbjct: 116 RTPFTIVGITGSVGKTTTKDLIRALLSPLGPTIAPQGSFNNEIGLPLTALQVGEETRFLV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G S +GEI +LT + RP +AV   +  AHL  F  +E I  AK+E+   L  +G   
Sbjct: 176 AEMGASAVGEIAYLTTIARPDLAVELKVGVAHLGGFGSVENIRQAKSELVRALPPSGLAI 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----------------- 267
           LN +D    L+   +    +          + D                           
Sbjct: 236 LNENDENIRLMPEMTGVRNLLWFGLHEDRPDEDRSDESETAYPSVPSAMSAAEIYGDQVQ 295

Query: 268 -----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                  S+      G    +     G H   N L  + +   +    +     L+    
Sbjct: 296 VDDQDRPSFTVHFPDGTGCPMSLALPGRHNVMNALAAICVAYAMDLPTEAIAGILAHQGA 355

Query: 323 KEGRGKRYRCALNQGF----FTLIDESYNANPASMKAAISVLSQISPHGEG-----RRIA 373
           +       R    +      FTLID+S+NANP SMKA +  L+              R+A
Sbjct: 356 QSPHRMDIRQVPFRPDSDLAFTLIDDSFNANPDSMKAGLDGLAAWHAESRTRDERPYRVA 415

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL------------PRS 421
           VLG M E+G   +  H  +     L     V   G       D L              +
Sbjct: 416 VLGSMLELGPNEKELHQRMGAYA-LSVADMVIAVGSEEEPHLDELAHDFVLGADHDQKEA 474

Query: 422 IHVHYSETMDGLFLFIQSSLVDG--DVVVVKSSNSCGFYRLINL 463
             +H+  + +     ++    +    VV++K S++ G   L + 
Sbjct: 475 GSIHWVHSAEQAADLVRGLEGEHRQTVVLLKGSHASGLQGLADY 518


>gi|229490386|ref|ZP_04384227.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
 gi|229322676|gb|EEN88456.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhodococcus erythropolis SK121]
          Length = 519

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 121/506 (23%), Positives = 193/506 (38%), Gaps = 42/506 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G           V G +  DSR +AP   F A+ G   DGHD   
Sbjct: 1   MIPM-TLSRIAEIVGGTLHDVDDSSTQVTGTVEFDSRKVAPGGLFLALPGARVDGHDHAE 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD-D-----VLGALNKLAVA 101
            AV             G   +VV    V + G  ++ +   D D     VL AL  LA A
Sbjct: 60  AAVAAGAVAVLAARPVGVPAIVV--PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARA 117

Query: 102 ARLRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                           T++ +TGS GKT+TK+++   L    +  A  GS+NN +G+P T
Sbjct: 118 VVDELATDGTPADGGLTLVGVTGSAGKTSTKDLIAALLRECGEVVAPPGSFNNELGLPWT 177

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + R      F + E+    +G +  LT +  P I V+  +  AHL  F   E IA AK E
Sbjct: 178 VLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGE 237

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E L            +  + + A   +     I   G+S++ D +        +Q+  
Sbjct: 238 LVEALPSAADG-GVAVLNADDRMVAAMASRTKARIVFVGQSEDCDVRATD-VVVDDQARA 295

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L             +               L   +  A  A  +   K    +R   
Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTKAASARRMEV 355

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQSFH 389
                  T++++SYNANP SM+AA+  L  ++    H   R  AVLG+M E+G  S   H
Sbjct: 356 TERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEH 415

Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVD 443
             +  +    ++S + + G      A+                          +++ L  
Sbjct: 416 DAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEP 475

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GD+V+VK+S S   + +   +L   P
Sbjct: 476 GDLVLVKASKSVELWTVAEAILAATP 501


>gi|333031463|ref|ZP_08459524.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
 gi|332742060|gb|EGJ72542.1| Alanine racemase [Bacteroides coprosuis DSM 18011]
          Length = 833

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 105/474 (22%), Positives = 197/474 (41%), Gaps = 22/474 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  ++ + I+   IG   Q  +N +  DSRS++   +  FFA+     DG  +I     
Sbjct: 3   YTIEEITRIIKAKRIG-DNQTIINWLLTDSRSLSFPDETLFFALVTSRGDGSKYIADLYS 61

Query: 63  KGAG-LVVVNTDMV--------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +G    V+ N +                      V++ L AL KLA   R +    ++ I
Sbjct: 62  RGVRNFVITNYENQILAKFQSRGISPYADANFLEVENPLKALQKLAAYHRSQFDCPVVGI 121

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKT  KE L   L+S KK      SYN+ IGVPL+L +M  D D  I E G+S   
Sbjct: 122 TGSNGKTVVKEWLHQILASSKKIVRSPRSYNSQIGVPLSLWQMHSDADVAIIEAGISQPD 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L  ++RP I V+T +  AH  NF  ++E    K ++F+  +    +    D+    
Sbjct: 182 EMGALESMIRPTIGVLTNLGGAHQENFFSMQEKCMEKLKLFKHCD---VVIYEADNDLIS 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +KS     +  +S    +     +   ++   ++ +  +  G         I     
Sbjct: 239 NCMSKSMLTSREIAWSRYDMERP-LFISGIQKDENETTISFRYLGLDNYYKIPFIDEASI 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N +  L I   L    D     ++   P      R      +    +I++SYN++ +S+
Sbjct: 298 ENSIQCLAICLYLMIPADQIRAGMAQLEPI---AMRLEVKEGKNNCLIINDSYNSDLSSL 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+    + S     +R  +L D+ E G+ + + +  +++++S   +  +   G +++ 
Sbjct: 355 DIALDFHYRRSLQKGLKRTLILSDLLETGQNTSTLYRRVSQLISSKQVQRLIGVGKNLMN 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  +I   +      L   IQ      + + +++K +   GF +++  + 
Sbjct: 415 EFSKFS-TIEKDFFNNTADLIEAIQLGRIKFNHESILLKGARRFGFEKVLEEIE 467


>gi|328478046|gb|EGF47933.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus rhamnosus MTCC 5462]
          Length = 462

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 119/482 (24%), Positives = 200/482 (41%), Gaps = 46/482 (9%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQ-------------EAFFAIKGPH 50
            T  ++ + ++   +          G++ DSR + P                F       
Sbjct: 3   MTLAEIARVVKAQPLSETVGSQVATGVAFDSRRLKPGMLLSHCVASVTGTSLF-----QR 57

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKAT 109
                     + +G   ++    +        +P   V D L A+ KLA     ++    
Sbjct: 58  R---------LLRGQSQLLWQRTICQMT--TKLPTLVVPDPLAAMQKLAQYYLLMKVNPK 106

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS GKTTTK+M    L++         +YNN IGVP+T+  M  + +  + E+GM
Sbjct: 107 VVAITGSNGKTTTKDMTAAILATQYHVVKTPDNYNNEIGVPMTILSMEPNTEVLVLEMGM 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G++  L+ L  P +AVIT I  AH+  F    +IA AK EI +GL++ GT   N D+
Sbjct: 167 DRPGQLHALSSLAEPDVAVITMIGEAHIEFFKTRAKIADAKMEITDGLKEDGTFIFNGDE 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L         ++  +FG                  +      Q   +      +G
Sbjct: 227 P----LLVSRAKQVTQSQETFGLHPENTLFAHSISGHRNHTE-FTVEQWPELTFSIPIMG 281

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N L  L +        +   KAL+ F        R +  +      ++ + YNAN
Sbjct: 282 EYNVVNALAALLVGRRFHVKPEAMQKALAHFQ---VTANRTQWLIGDVGEQILSDVYNAN 338

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +MKA I   S+      GR IAVLGDM E+GE S++ H  LA+ L  + I  V+L G 
Sbjct: 339 PTAMKAVIHDFSEF--QTAGRHIAVLGDMLELGEQSRTLHAGLADALDPHEIQEVYLYGS 396

Query: 410 HVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            + AL +AL        +H +  +    +   +Q+ +   D++++K+S+      ++  L
Sbjct: 397 EMQALAEALTTKYPQDQVHYYPLDAKSTMIRDLQNDVGHDDMLLLKASHGLHLETVLAAL 456

Query: 465 LE 466
           + 
Sbjct: 457 VA 458


>gi|76789498|ref|YP_328584.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|76168028|gb|AAX51036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis A/HAR-13]
          Length = 450

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITYIDVQHAMHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI  A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|289640756|ref|ZP_06472927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
 gi|289509332|gb|EFD30260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Frankia
           symbiont of Datisca glomerata]
          Length = 475

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 193/470 (41%), Gaps = 24/470 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M    T  ++     G           V G+ IDSR +A    F A+ G   DGHDF   
Sbjct: 1   MT--LTLREVAVVCGGRLDAVDDHDAAVTGVVIDSRQVAAGALFVAVAGERVDGHDFAA- 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                          V +   + +P   V D + AL  LA   R RS AT++A+TGS GK
Sbjct: 58  ------AAAGAGAVAVLAARPVGVPAVVVADPVAALAALAAQVRTRSSATVVAVTGSAGK 111

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L  +  T A  GS+NN IG+PLT+ R+     F + E+G    G I  L 
Sbjct: 112 TTTKDLLADLLGELGPTVAAAGSFNNEIGLPLTVTRIEPATRFAVLEMGARGPGHIAALC 171

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            L RP I V+  +  AHL  +  G   IA AK E+ E       +  +      + L A 
Sbjct: 172 ELARPRIGVVLNVGSAHLGQYADGRAGIARAKGELAEAASDAVVLNAD------DPLVAG 225

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     + +FG+ + AD +    +   +       +       V   +         +
Sbjct: 226 MAARARGEVITFGEGERADVRAHDVRVGDDGRARFDLVAAGERHPVALTLVGEHQVGSAL 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V+I          A ++   +     R   A+     T+I+++YNANP SM+AA+ 
Sbjct: 286 AAAAVAIRLGLPPARA-AEALSRARARSRWRMEVAVTDTGVTVINDAYNANPESMRAALK 344

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +S     R  AVLG M E+G  +   H  L  ++    +  +   G     +    
Sbjct: 345 TLVDLS--RGRRAWAVLGGMEELGASADDEHDALGRLVVRLGVEQLVAIGERARRIHLGA 402

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 S    +   ++     ++  LV GDVV+VK+S + G  R+ + L
Sbjct: 403 SLEGSWSGESVWVADVEQACTLLREQLVPGDVVLVKASRAFGLERVASEL 452


>gi|237803186|ref|YP_002888380.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|237805107|ref|YP_002889261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273407|emb|CAX10322.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231274420|emb|CAX11215.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 450

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAMHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI  A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|254446835|ref|ZP_05060310.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
 gi|198256260|gb|EDY80569.1| Mur ligase middle domain family [Verrucomicrobiae bacterium DG1235]
          Length = 435

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 189/435 (43%), Gaps = 24/435 (5%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           G++ DSR I   E F A+K    DGHDF+  A + GA   +V+         + +P   V
Sbjct: 2   GLTNDSRKIESGELFAALKTAARDGHDFLESARRSGAAGAIVDR----FQEEIELPQLVV 57

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           D+V  AL  LA   R   +A ++ ITGS GKTT KE+L   L S   T +  G+ NN IG
Sbjct: 58  DEVGEALLALAGGYRATWQANVVGITGSCGKTTCKEVL-ACLLSGFATLSTRGNLNNLIG 116

Query: 149 VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           VP+++ R      +F + E G+S  GE+  L   + P   ++T + PAHL +   +E +A
Sbjct: 117 VPMSMLRPEGASCEFAVLEAGISEPGEMERLAAAINPEWGIVTALGPAHLEDLGTVENVA 176

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K ++F+G            + +   + A    L  +  Y   +          +   +
Sbjct: 177 REKGKLFQGSRLRRVFAGESCEPYLSDMAAPRVLLVKQDPYLSVEWAFR------FSSEA 230

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            ++ +E ++ G      + G+G  +A N+ + L     +  +VD    AL  + P + R 
Sbjct: 231 GRTCLEQRIGGSVQRFEYEGLGAGLASNVALALATAFSMGLEVDQLRSALGSWKPSQMRN 290

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +            +  + YNANP SM+ +++     +P GE  R+ V+G M E+G  +  
Sbjct: 291 EWKEIGGR----LVFLDCYNANPISMRDSLATFVSNTPEGE-PRMYVIGCMEELGSEASR 345

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVD 443
            H +L     L N   + + G    ++   +  S H        ET++     ++     
Sbjct: 346 LHEELGREFPLRNQDFLLVIGSEAASVLRGMKDSGHEMDRCFEIETIEEASERLKDFAGS 405

Query: 444 GDVVVVKSSNSCGFY 458
              V +K S      
Sbjct: 406 ---VFLKGSRRYRLE 417


>gi|149278412|ref|ZP_01884549.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
 gi|149230782|gb|EDM36164.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Pedobacter sp. BAL39]
          Length = 824

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/469 (20%), Positives = 193/469 (41%), Gaps = 21/469 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           +T   + + I            ++ + IDSRS+       FFA+     DGH++I  A  
Sbjct: 6   YTIRRISEIIHARPSVTNESLIISRLVIDSRSMIDPENSLFFALS-AKRDGHEYIPDAYA 64

Query: 63  KGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            G    V++         +          VDDVL AL +LAV  R +    ++AITGS G
Sbjct: 65  HGIRNFVISRTEFLADQKAGDYADANFLLVDDVLKALQELAVFNRRQYDTPVMAITGSNG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L++         S+N+ IGVPL++  +  +    IFE G+S   E+  L
Sbjct: 125 KTIVKEWLYQLLAADFNIVRSPRSFNSQIGVPLSVWDLTEEHTLAIFEAGISKGEEMDAL 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++ P + ++T +  AH   F      +  +  + +           Y   + + +  K
Sbjct: 185 AAIIYPTVGILTNVGEAHAEGF-----SSQKEKLLEKLKLFKEADVFIYSPEYTQGIPKK 239

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  T +S+  +++AD Q+   +   +++++    +G+ +E +         +N ++
Sbjct: 240 DLPGN--TKFSWSLTESADLQISFIEPIDDKNYIRAIFKGEEIECLIPFSDRASVENGII 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  +    +    A S        G R          ++ID+SY+A+ +S+  A+ 
Sbjct: 298 CWATLLSMGYSPED---ADSRLEKLNRVGMRLELKHGINQCSVIDDSYSADISSLAIALD 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L+  + H +     +L D+ E G   +  + ++A +L    I+ +   G ++ A     
Sbjct: 355 FLNLQNQHPKK--TLILSDLYETGRKDEELYTEIAALLKQKQINRLIGVGPNISASASQF 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              +   +  +         +   + + +++K +    F R+  L+ ++
Sbjct: 413 K--LESSFYSSTQDFIDQFPAIHFNDETILLKGARRFEFERISKLITQK 459


>gi|206602136|gb|EDZ38618.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 495

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 174/472 (36%), Gaps = 47/472 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                + G+S D+R + P   F A+ G  +DGHD++  A +KGA   +V+  + AS    
Sbjct: 28  PDDTPLAGVSTDTRDLRPGMLFVALTGDTFDGHDYVGEAFRKGARAALVSRPVEASG--- 84

Query: 82  SIPVFGVDDVLGALNKLAV-AARLRS--KATIIAITGSVGKTTTKEMLTIA-LSSIKKTY 137
             P+  V D   AL  LA    R R      ++ +TG+ GKTTT+E+L +      ++ +
Sbjct: 85  --PLLIVGDTRLALQGLARAIVRKRFAEGKRLVTLTGTAGKTTTRELLCLVLSREGRRPH 142

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               ++NN IGVP TL          + E+G+   G++ +L+ ++   ++++T++   HL
Sbjct: 143 TNRQNWNNEIGVPRTLWEWGEKDGDAVLEVGIRKPGDMEYLSSVLVSDVSIVTSVGEGHL 202

Query: 198 SNFSGIEEIASA-----KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
                IE +              G        L    +     + +     +      G 
Sbjct: 203 ETLGSIEGVWKEKSNLLNWVRPGGGIVLPLDLLFRYPASPVFRERQRRFFFVALDPDPGD 262

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           S  A   + +       +  + +     +        +  +     ++  +  L A    
Sbjct: 263 SARASRSVPEGSTILSGTLRKEEGGTWILSGTTGPESFSWSMPSPSSILAMDALLALAAG 322

Query: 313 AIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +S+    +   K        +         L+ + YN+NP S++ A    +++   
Sbjct: 323 NALGVSLSEGAKHLEKFAPLPGRMQEKRTPEGALLLLDHYNSNPLSLQGAFQWCTEVWKK 382

Query: 367 -------GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                  G G+ +AVLGDM E+GE S   H     + +    S ++  G      ++   
Sbjct: 383 EASLAGGGPGKLLAVLGDMLELGEDSSRLHRKAGLIAAETPFSAIFYKGDFFQDFREGYL 442

Query: 420 RSIHVHYSETMDGLFLF------------IQSSLVDGDVVVVKSSNSCGFYR 459
                                        +  +L  GDVV+VK S      +
Sbjct: 443 SGKG--------EAARLTRLSGPPYSGQGVFPALRRGDVVLVKGSRGMHLEQ 486


>gi|187479354|ref|YP_787379.1| putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase [Bordetella avium 197N]
 gi|115423941|emb|CAJ50493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bordetella avium 197N]
          Length = 939

 Score =  186 bits (473), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 118/440 (26%), Positives = 192/440 (43%), Gaps = 21/440 (4%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+S D+RS+A  E F AI G ++DGH ++  A             +   +   S+P  
Sbjct: 500 VAGVSTDTRSVAADEIFVAISGENFDGHRYLAQAQ----AAGACAAVVAHRVSDSSLPQL 555

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA---LSSIKKTYACIGSY 143
            + +   AL +LA A R R    +IA+TGS GKTTTKEM++             A  G++
Sbjct: 556 VLGETRHALGRLATAWRARFSLPVIAVTGSNGKTTTKEMISAILAAWQGEAHRLATSGNF 615

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IG+PLTL R+       + ELGM+H GEI +L  + +  +A++      H     G+
Sbjct: 616 NNDIGLPLTLLRLREGYRAAVVELGMNHPGEIAYLAPMAQASVALVNNAQREHQEFLHGV 675

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +A     +   L + G      DD +  +        G + +  FG     D   +K 
Sbjct: 676 EAVARENGAVLSALPEDGVAVYPGDDVYTPIWDE---LAGARRVLRFGLQPGLDVYAQKI 732

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +  +  +  +V       ++V    G H  +N L  +       A + +A++AL  F   
Sbjct: 733 RPDASGTLCQVVTPMGVADIVLPVPGEHNLRNALAAIACALAAGAPLASAVRALEGFSAV 792

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GR    +         LID++YNANP S++ AI VL+Q+     G R+ VLGDM E+G+
Sbjct: 793 KGR---MQRKETSNGTILIDDTYNANPDSVRVAIEVLAQLP----GPRVLVLGDMGEVGD 845

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              + H ++        I  +   G    A         H     ++D +   ++     
Sbjct: 846 EGPAMHREVGGYARDQGIDAMVTLGDASRAAAAEFGAGAHA--CASVDEVLAALRGM-NP 902

Query: 444 GDVVVVKSSNSCGFYRLINL 463
              V++K S      R++  
Sbjct: 903 FS-VLIKGSRFMRMERVVTA 921



 Score =   99 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 79/447 (17%), Positives = 156/447 (34%), Gaps = 36/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR ++P + F A +G   DG  +I  A+  GA +V+ ++D +         V  V  + 
Sbjct: 33  DSRELSPGDVFIACRGVQGDGRAYIGSALDAGAAVVLYDSDALTQSVVADSRVLPVAGLR 92

Query: 93  GALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN----- 145
           G L +LA     +     T++A+TG+ GKT+  + L  AL+ + K    IG+        
Sbjct: 93  GMLGELADGWYGQPSASLTVLAVTGTNGKTSCVQWLARALTRLGKPCGTIGTLGGLLPDG 152

Query: 146 ----------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                      +     L     D       +  S +G  +     VR   A  T +   
Sbjct: 153 VSLGGNLTTPDVITLHRLMAQMRDAGAQAVAIEASSIGLEQGRMDSVRLIAAGYTNLTRD 212

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E+   A   +           +N DD+    L AK                 
Sbjct: 213 HLDYHGTMEQY-EAAKALLFNWPGLQAAVINADDAAGRRLLAKLPVGLASAYA--IDHAE 269

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD +    +  +      +       +VV   +G+H   N+L+  G++  L   +    +
Sbjct: 270 ADVRAFDLQATAHGQVFTLATSEGQAQVVTGLLGHHNVSNLLLVAGLLLRLGWPLAAVAR 329

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++   P +GR +      +     ++ + Y   P +++ A+  L  ++    G  + + 
Sbjct: 330 EVAAAAPVDGRLQAVAPVGSAQGPLVVVD-YAHTPDALERALLALRPVAQARNGALVCLF 388

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETM---- 430
           G     G+       ++  +        + +S  +  +    A+   +       +    
Sbjct: 389 G---CGGDRDPGKRPEMGRIAGEL-ADRIIVSSDNPRSEAPQAIIDQVLAGVGPDLALRA 444

Query: 431 --DGLFLFIQSSLV--DGDVVVV--KS 451
             D     + +       DVV++  K 
Sbjct: 445 ESDRALAILHAIWDSWPEDVVLLAGKG 471


>gi|254372483|ref|ZP_04987972.1| hypothetical protein FTCG_00044 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570210|gb|EDN35864.1| hypothetical protein FTCG_00044 [Francisella novicida GA99-3549]
          Length = 453

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/472 (22%), Positives = 204/472 (43%), Gaps = 26/472 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   L        +G      +  ++I+S  +     F AI   + DGH+FI  A
Sbjct: 1   MIK--SLKQLAIQSGLEYLG--EDVSIQTVAINSNEVRQDCLFVAIV-ANRDGHEFIPSA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +   A  ++V+         L IP     + +  L  LA   R      II++TGS GKT
Sbjct: 56  IANRAKAILVSKKQ-----GLDIPQVVCGNTIKGLRALAKEYRKSLTMPIISLTGSCGKT 110

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM+   L   K  +      N  +GVP+T+   P DVDF + E G +  GEI+    
Sbjct: 111 SVKEMIVTLLGERKVHFTQGNLNNY-LGVPMTILETPHDVDFAVIEAGTNVGGEIKAAAD 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P+IA+IT +   HL N   ++ +   K E+ + L + G   +N DD           
Sbjct: 170 IIQPNIAMITNVGACHLENLKTLDGVMIEKGELLKALPRDGFCIVNLDDERIPNYAKLLE 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I    +   +  AD  +  ++  S    +++++  +  +     IG H   N ++ +
Sbjct: 230 CKKISCSMT---NPKADILVLDYRVTSNSYAVKIRIFDQEYDYQLPNIGKHNLFNSVLAI 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  +  +    ++        +GR    + +      TLID++YNA+  +++AAI  L
Sbjct: 287 ASVVAVGLEPKDFLQNTQNIKNYKGRFSTEKLSDKL---TLIDDTYNASAGAVQAAIEDL 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALP 419
           ++     +G++I  +  M E+G+ ++++H  + + L   N+  V+L G  +++    A  
Sbjct: 344 AEF----DGKKILAISSMRELGDEAENYHRKMGQWLKKANLDKVFLFGEKNLIDYVLAEY 399

Query: 420 RSIHVHYSETMDGLFLFIQSSL---VDGDVVV-VKSSNSCGFYRLINLLLEE 467
            + +  Y E+ D L   +   L         + VK + S     ++  + + 
Sbjct: 400 PTQNAKYYESKDELNNDLAKILDEYKSQSTKLTVKGARSFKMEEVVAFVRQR 451


>gi|313619820|gb|EFR91411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria innocua FSL S4-378]
          Length = 394

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 183/392 (46%), Gaps = 13/392 (3%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                  PV  V++ L AL +LA     + K  +IAITGS GKTTTK+++   + +  K 
Sbjct: 11  PNPPTDFPVILVENTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKV 70

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH
Sbjct: 71  HYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAH 130

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +      EEIA AK EI  GL  +G +   ++++         +  G     +FGKS  A
Sbjct: 131 IEYLGSREEIAKAKLEITAGLNPSGILIYPHEENLL-----LGNVDGDFRQLTFGKSDAA 185

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    + +  +E +      +   +E+    IG H   N +  +     +  + +    A
Sbjct: 186 EIYPLEIRAEAEGTSFITNWE-PDLEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSA 244

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L           R      +    +++++YN++P ++K  +     +   G+  +  VL 
Sbjct: 245 LKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSKGK-PKYLVLA 300

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGL 433
           DM E+G+LS   H + AEVL    I  ++L G  + A     +A      V + +T + L
Sbjct: 301 DMLELGDLSTKLHQESAEVLENDTIEKIFLYGEAMKAFKSVAEAKIGQGKVQHFDTKESL 360

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + S +   + ++VK S   G   ++  L+
Sbjct: 361 ETALLSEINGNEWILVKGSYGMGLKDVVENLI 392


>gi|226307043|ref|YP_002767003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
 gi|226186160|dbj|BAH34264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Rhodococcus erythropolis PR4]
          Length = 519

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 121/506 (23%), Positives = 192/506 (37%), Gaps = 42/506 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+ T   + + + G       P   V G +  DSR   P   F A+ G   DGHD   
Sbjct: 1   MIPM-TLSRIAEIVGGTLHDVDDPSTQVTGTVEFDSRKAGPGGLFLALPGARVDGHDHAE 59

Query: 59  HAVQK-----------GAGLVVVNTDMVASIGSLSIPVFGVD-D-----VLGALNKLAVA 101
            AV             G   +VV    V + G  ++ +   D D     VL AL  LA A
Sbjct: 60  AAVAAGAVAVLAARPVGVPAIVV--PSVPNDGPSAVMLLEHDTDGSGAAVLHALGLLARA 117

Query: 102 ARLRS---------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                           T++ +TGS GKT+TK+++   L    +  A  GS+NN +G+P T
Sbjct: 118 VVDELAAEGSASGGGLTLVGVTGSAGKTSTKDLIAALLRERGEVVAPPGSFNNELGLPWT 177

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + R      F + E+    +G +  LT +  P I V+  +  AHL  F   E IA AK E
Sbjct: 178 VLRADEKTRFLVLEMSARGVGHVGELTKIAPPKIGVVLNVGTAHLGEFGSREAIAVAKGE 237

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E L            +  + + A   +     I   G+S++ D +        +Q+  
Sbjct: 238 LVEALPSAADG-GVAVLNADDRMVAAMASRTKARIVFVGQSEDCDVRATD-VVVDDQARA 295

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L             +               L   +  A  A  +   K    +R   
Sbjct: 296 SFTLNCSQGSARIRLAVHGEHHVSNALAAAAVALENGLAVADIARVLEGTKAASARRMEV 355

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQIS---PHGEGRRIAVLGDMCEMGELSQSFH 389
                  T++++SYNANP SM+AA+  L  ++    H   R  AVLG+M E+G  S   H
Sbjct: 356 TERADGVTVVNDSYNANPDSMRAALKALVSMARSDRHFGRRSWAVLGEMGELGPESVVEH 415

Query: 390 IDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVD 443
             +  +    ++S + + G      A+                          +++ L  
Sbjct: 416 DAIGRLAVRLDVSKLIVVGTGRTSRAMHQGAVMEGSWGDESVVVPDAAAAIAILEAELEP 475

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GD+V+VK+S S   + +   +L   P
Sbjct: 476 GDLVLVKASKSVELWTVAEAILAATP 501


>gi|255311590|ref|ZP_05354160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276]
 gi|255317891|ref|ZP_05359137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis 6276s]
          Length = 450

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI  A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|313837461|gb|EFS75175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA2]
 gi|314929329|gb|EFS93160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL044PA1]
 gi|314971668|gb|EFT15766.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Propionibacterium acnes HL037PA3]
 gi|328906993|gb|EGG26759.1| UDP-N-acetylmuramyl pentapeptide synthase [Propionibacterium sp.
           P08]
          Length = 485

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 116/483 (24%), Positives = 185/483 (38%), Gaps = 33/483 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     L Q ++   +    Q   + + ID+R + P   + A+ G   DGHDF   A
Sbjct: 1   MRVL-DIATLAQWVEAAPVDDSAQVGPD-VVIDTRKVTPGALYIALPGARVDGHDFTQAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGS 116
              GA  V+      A      +P   VDD    L++LA       R R     IA+TGS
Sbjct: 59  QDAGAAAVLTTRSTDA-----QVPHLIVDDGRAGLSRLARHVVATERER-GMLTIALTGS 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK+ML   L +   T A +GS+NN IG PLT  R   D  F + E+G   LG I 
Sbjct: 113 SGKTSTKDMLAQILETFGPTVAPVGSFNNEIGAPLTACRSNEDTSFLVSEMGARGLGHIS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +LT +V P +A++  +  AHL  F   E IA AK EI   L   G   LN  D+    + 
Sbjct: 173 WLTSIVPPDVAMVLNVGIAHLGEFGSREVIAQAKGEIVGALAPDGWAVLNAADNLIAGMA 232

Query: 237 AKSHALGIKTIYSFGKSK-------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +++H             +        A+            +             V     
Sbjct: 233 SRTHGHIAWFSPDADHRRPDAEIEAWAESIHADDLDRHSFTLAARYGGTTWRSPVSLTTM 292

Query: 290 YHMAQNMLMTLGIVSILTADVDT-------AIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                   +     ++    ++           A ++ +       R +         L+
Sbjct: 293 GAHQVANAVAATAAALAALAMNDGTDEQTVIQIAGALSNAVSRSAMRMQLRERADGLVLV 352

Query: 343 DESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           ++ YNANP SM A+++ +  +     +   + R +AVLGDM E+G  S   + +     +
Sbjct: 353 EDCYNANPDSMAASLAAMGHVLAARRARDPQTRGVAVLGDMLELGADSARLNAESGRRAA 412

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                 +   G    ++ D            T++     +       DVV++K+S     
Sbjct: 413 QAGFDVIIAVGDEAESIADGAQTEGAHVIVATVEEAARSL--GWTSHDVVLLKASRGLAL 470

Query: 458 YRL 460
            R+
Sbjct: 471 ERV 473


>gi|332670123|ref|YP_004453131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
 gi|332339161|gb|AEE45744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Cellulomonas
           fimi ATCC 484]
          Length = 485

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 136/470 (28%), Positives = 211/470 (44%), Gaps = 23/470 (4%)

Query: 16  GHSIGIVPQGFVNG------ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           G  +   P    +G      +  DSR + P   F A+ G H DGHD+   AV  GA LV+
Sbjct: 14  GGVLRAEPDVDPHGLVVAGAVVTDSREVEPGGLFVALPGEHVDGHDYAPGAVAAGAALVL 73

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----------SKATIIAITGSVGK 119
              ++  + G L   V   D V  AL  LA    +R              ++ ITGSVGK
Sbjct: 74  GARELTGADGRLLPVVVVPD-VERALGDLAREVLVRLRAASLEPGGPGLRVVGITGSVGK 132

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L     S   T A + S+NN IG+PLT+ R      F + E+G S  G + +LT
Sbjct: 133 TTTKDLLAQLCGSAGPTVAPVRSFNNEIGLPLTVLRADESTRFLVLEMGASGPGHLTYLT 192

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  P +AV+  +  AHL  F GIE +A+AK+EI +GL   G   LN DD     ++A +
Sbjct: 193 DIAPPDVAVVLVVGHAHLGGFGGIEAVATAKSEIVQGLLPDGVAVLNADDPRVLAMRALA 252

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +    S G    A   +   +    +  +E +    S  V                
Sbjct: 253 PGDVVTFGASTGAQVRAHDVVVD-RSGRARFVLEARDGAGSRTVPVELRLVGEHHVHNAL 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               + L   +     A+ +         R          T+ID+SYNANP SM+AA+  
Sbjct: 312 AAAATGLAVGLTLDEVAVGLGAADALSPHRMHVVERPDGVTVIDDSYNANPDSMRAALKA 371

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L+ ++   + R +AVLG+M E+G+ ++  H  +  ++   N+    + G    A++D   
Sbjct: 372 LAVLAG-RDRRSVAVLGEMLELGDEAREAHDAIGRLVVRLNVGLTVVVGEGARAIRDGAN 430

Query: 420 R----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   V  ++ ++    F+   L  GDVV+VKSS   G ++L +LL+
Sbjct: 431 HEGSWGDEVVLADDLETAARFLDEELRPGDVVLVKSSYGAGLWQLGDLLV 480


>gi|255691132|ref|ZP_05414807.1| alanine racemase [Bacteroides finegoldii DSM 17565]
 gi|260623225|gb|EEX46096.1| alanine racemase [Bacteroides finegoldii DSM 17565]
          Length = 852

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 99/489 (20%), Positives = 187/489 (38%), Gaps = 38/489 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + Q+I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAQSIGARRVGEY-EVTIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIPV----------------------------FGVDDVLGALN 96
               V++ +    + +  + +                              V + L AL 
Sbjct: 64  VRNFVISEEEFKQVENGELRIESAMQDDDAQPILNSQLSTLNFPSTLNFLIVPNPLKALQ 123

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           KLA   R R    +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++
Sbjct: 124 KLAEVHRERFNIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQL 183

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+ 
Sbjct: 184 SEEAELGIFEAGISEMGEMGALKRMIKPSIGILTNIGGAHQENFFSLQEKCMEKLTLFKD 243

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +                L +   A  + T      S+    +       +++    V  
Sbjct: 244 CDVV-------IYDGDNELISNCVAKSMLTAREIAWSRTDIERPLYISCVTKKEDHTVIA 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      I +    ++   L  ++     +  A +        E    R      +
Sbjct: 297 YRYLNMDNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGK 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++
Sbjct: 357 NNCLLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLV 416

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
               I  +   G  + +        I  ++    + L        +  +V+++K S    
Sbjct: 417 QSRGIDKLIGVGPEISSCAARFDDGIERYFFPNTEALLKSELLKSLHSEVILIKGSRVFN 476

Query: 457 FYRLINLLL 465
           F  +   L 
Sbjct: 477 FDLVSEALE 485


>gi|295086668|emb|CBK68191.1| alanine racemase [Bacteroides xylanisolvens XB1A]
          Length = 846

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 102/484 (21%), Positives = 190/484 (39%), Gaps = 34/484 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102
               V+   D                             ++    V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +    L +   A  + T      S+    +     + +++    V        
Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I +    ++   L  ++     +  A +        E    R      +    LI
Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLLL 465
             L 
Sbjct: 476 EALE 479


>gi|254993283|ref|ZP_05275473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL J2-064]
          Length = 392

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 108/392 (27%), Positives = 180/392 (45%), Gaps = 13/392 (3%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +  PV  V+D L AL +LA     + K  +IAITGS GKTTTK+++   + +  K 
Sbjct: 9   PNPPMDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKDIMAAIVETTYKV 68

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P IA+IT I  AH
Sbjct: 69  HYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAH 128

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +      EEIA AK EI  G                E L    +  G     +FGKS+ A
Sbjct: 129 IEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGDFRQLTFGKSEAA 183

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    + +  +E +      +   +E+    IG H   N +  +     +  + +    A
Sbjct: 184 EIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAREIGIEGEKIQSA 242

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L           R      +    +++++YN++P ++K  +     +   G+  +  VL 
Sbjct: 243 LKNME---RSKSRLEWITTKSGARILNDAYNSSPTALKTVLKTFMHMDSSGK-PKYLVLA 298

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---LKDALPRSIHVHYSETMDGL 433
           DM E+G+LS   H + AEVL    I  ++L G  + A   + +A      VH+  T + L
Sbjct: 299 DMLELGDLSTKLHQESAEVLEKGMIEKIFLYGEAMKAFGDIAEAKIGQGKVHHFNTKESL 358

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + S +   + ++VK S   G   ++  L+
Sbjct: 359 ETALLSEMNGNEWILVKGSYGMGLKDVVENLI 390


>gi|296436305|gb|ADH18479.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9768]
 gi|296438164|gb|ADH20325.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/11074]
 gi|297140665|gb|ADH97423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
           [Chlamydia trachomatis G/9301]
          Length = 450

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRLVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNCANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADQFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI  A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|114777866|ref|ZP_01452797.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551857|gb|EAU54397.1| probable murein precusor biosynthesis bifunctional protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 452

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 125/474 (26%), Positives = 200/474 (42%), Gaps = 50/474 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF-------- 56
            +  D+  A  G  +  +P+  V+ I+ D+R     + F A++GPH+DGH F        
Sbjct: 3   LSGADIQCATGGEWLHGMPEW-VSEIATDTRGFKSGQCFLALRGPHFDGHRFAAPIADAA 61

Query: 57  ---ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIA 112
              I  A              +    SL +P   V+D L AL  +A A R++ K  T++A
Sbjct: 62  CALIGDA------------RGMRYWESLPVPQLQVEDTLRALGDIAHAWRMQLKQTTVVA 109

Query: 113 ITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           I+GS GKT+ + +L    S++     A   + NN IGVP TL  +P D    + E G+S 
Sbjct: 110 ISGSFGKTSLRSLLQHGFSALGLHVSATTANLNNLIGVPKTLLAVPADATLALIECGISE 169

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GE+  L+ +V+P +AV+T I  AH     G+  +   KA +F  L              
Sbjct: 170 VGEMERLSAIVQPDVAVLTGITNAHGEGLGGLAGVVEEKAALFSHLNTGAWCA------- 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                 +  A  +   +    +   D +  +     +   +  Q   +  ++       H
Sbjct: 223 ----LGEGVADQLGRHHISQPADLLDVEQSELSWRLDGQCLHFQRGDEQSQIELSLPARH 278

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A NM +   I+  L  +      A ++    +    R +     G   ++D+SYNANP 
Sbjct: 279 WATNMHLAACIIMRLMPEARLNDVAQALASW-QAPAGRMQVRTGSGGCKVLDDSYNANPV 337

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           SM+AAI  L  +     G RIAVLGDM E+GE S   H  L     +  I  ++L G  +
Sbjct: 338 SMQAAIDTLVAMP----GCRIAVLGDMAELGEASLGAHTGL----DVSGIDKLYLVGPKM 389

Query: 412 LALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464
            AL      S    +          + + S      V+VK S S     ++N+L
Sbjct: 390 HALAAG---SGTARWYPDHRAAAASLSRESFGPDATVLVKGSRSMALETVVNVL 440


>gi|332884708|gb|EGK04965.1| hypothetical protein HMPREF9456_00718 [Dysgonomonas mossii DSM
           22836]
          Length = 823

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 191/467 (40%), Gaps = 17/467 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           ++ H + + I       + +  ++ +  DSR +    +  FFA+K  + DGH +I    +
Sbjct: 3   YSIHQVAKIIDAMPT-DLNETAISILLTDSRQVFFPDETLFFALKTKNNDGHRYISELYE 61

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            G    VV+                V   L AL +LA   R +    +I ITGS GKT  
Sbjct: 62  LGVRNFVVSDLQPEWEEYEDANFLVVVHTLFALQRLAAYHRNQFNVPVIGITGSNGKTVV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L           SYN+ IGVPL++ +M      G+FE G+S   E+  L  ++
Sbjct: 122 KEWLYQVLHHDFNITHSPRSYNSQIGVPLSVWQMNSHTQLGVFEAGVSQPEEMAKLEAII 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I + T I  AH   F  +++    K E+F   +    I    ++   +     +   
Sbjct: 182 NPTIGIFTNIGQAHQEGFKSMKQKCLEKLELFINCD---VIICEEENELVDECMEIACLS 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +  +S   S  +   + K ++    + +   + G + +           +N +  L  
Sbjct: 239 HKRLTWSRKGSNKSPLHIMKVEKLGNSTTIHYSILGMASQFTIPFADNAAIENAIQVLAT 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    + ++   P   R    +   N     LI+++YN++  S+  A+  L+Q
Sbjct: 299 AIYLHLPLPDINQRMADLEPVAMRLDVRQGKNN---TILINDTYNSDINSLGIALDFLAQ 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            +   + R++ ++ D+ + G + +  +   + ++    I  +   G  +   KD   ++ 
Sbjct: 356 RATDSQKRKVLIISDIPQSGLIPKELYYLASNLVLNKKIDVLIGIGKEISTYKDLF-KND 414

Query: 423 HVHYSETMDGLFLFIQSSL---VDGDVVVVKSSNSCGFYRLINLLLE 466
            +H+  T +    FI S++        +++K + S  F  + N LLE
Sbjct: 415 EMHFFNTTND---FIHSNIWSDFHDMFILLKGARSFSFESI-NKLLE 457


>gi|227872145|ref|ZP_03990515.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
 gi|227842003|gb|EEJ52263.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Oribacterium sinus F0268]
          Length = 434

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/445 (27%), Positives = 197/445 (44%), Gaps = 31/445 (6%)

Query: 27  VNGISIDSRS-IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIP 84
           V+ I +DSR        F  IKG   DGH FI  A++ GA  +    D          + 
Sbjct: 12  VDKIILDSREDCTKG-LFVPIKGEKQDGHRFIPMAIEHGASFIFTEEDCSELSKEYPEVR 70

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+  + AL  L   AR      +I +TGSVGKTTT+ M+  ALS  K  +   G+ N
Sbjct: 71  FISVESTIDALQALGGYARSLYSGLVIGVTGSVGKTTTRAMIAKALSVEKSVFETKGNAN 130

Query: 145 NHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           + +G+P+TL  M  +  +  + ELG+S  GE+  +  +    IAV T I  AHL N    
Sbjct: 131 SQLGLPITLFSMAKENKEISVIELGISIPGEMHRIGEIASCDIAVFTNIGSAHLENLKTK 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E     K  I EG +K  +++L   D+    L  +                         
Sbjct: 191 ENTCFEKMHILEGNQKEVSLYLPKKDAILGTLTEEKIRAMGFL----------------- 233

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +  + +    K  E+     G HM  N  + + I   L       ++ L  F   
Sbjct: 234 ----GEKKLNLFFYEKKEEIPLSVPGEHMEDNASVAMAIGLSLGLHKQKLLQGLLEFQGL 289

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +GRG        +    +ID+SYNA+P SMKA++ VL+  S  G  R+IAVLGDM E+G+
Sbjct: 290 KGRGG---RLSTEDGIMIIDDSYNASPDSMKASLKVLA--SEKGAKRKIAVLGDMNELGD 344

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLV 442
              ++H ++ E+L    I  ++  G     ++ A+    +       ++ L L ++  + 
Sbjct: 345 NEIAYHREIGELLKSLPIDALFTLGKKGEEIRKAMGEKLLPGKACFNLEELSLSLEEEIK 404

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
            GD+++ K+SNS    ++I  +  +
Sbjct: 405 PGDLLLFKASNSLSLSKVIQEIRSK 429


>gi|298480379|ref|ZP_06998577.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
 gi|298273660|gb|EFI15223.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. D22]
          Length = 846

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 190/484 (39%), Gaps = 34/484 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102
               V+   D                             ++    V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +    L +   A  + T      S+    +     + +++    V        
Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I +    ++   L  ++     +  A +        E    R      +    LI
Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    ++
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLLL 465
             L 
Sbjct: 476 EALE 479


>gi|293370373|ref|ZP_06616927.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
 gi|292634521|gb|EFF53056.1| alanine racemase [Bacteroides ovatus SD CMC 3f]
          Length = 846

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/484 (20%), Positives = 190/484 (39%), Gaps = 34/484 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRVGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGARYIPDLYDRG 63

Query: 65  AG-LVVVNTDMVASIGSL---------------------SIPVFGVDDVLGALNKLAVAA 102
               V+   D                             ++    V + L AL KLA   
Sbjct: 64  VRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQLSTLNFLIVPNPLKALQKLAETH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +    L +   A  + T      S+    +     + +++    V        
Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRTDIERPLYISRVTKKEDHTVISYRYLEM 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I +    ++   L  ++     +  A +        E    R      +    LI
Sbjct: 297 DNTFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    ++
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGVN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLASNILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLLL 465
             L 
Sbjct: 476 EALE 479


>gi|15605489|ref|NP_220275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|3329218|gb|AAC68351.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminoligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|296437234|gb|ADH19404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis G/11222]
 gi|297748886|gb|ADI51432.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-EC]
 gi|297749766|gb|ADI52444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydia trachomatis D-LC]
          Length = 450

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 175/437 (40%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G++IDSR + P + FFA+ G    GH F+  A Q GA   VV +D      S  + +
Sbjct: 24  KVTGVAIDSRFVLPGDVFFALPGNRTSGHLFLKQAAQSGAVAAVVASDYHG--PSYGLQL 81

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL              +I ITGSVGKTTTK      LSS+ K +    SYN+
Sbjct: 82  LRVADPREALRAAGRTQGALFYGEVIGITGSVGKTTTKNFANQLLSSVYKVFMSPKSYNS 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + +PL++     D DF + E+G+S    ++ L  ++ P I VIT I   H  +F   + 
Sbjct: 142 QLTLPLSVLMADGDEDFLLLEMGVSEPNNMKNLLEIIEPTIGVITHIDVQHAVHFLD-KG 200

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                 E    LE+ G   +  D S+F+    K+ A    +     ++ +  ++    + 
Sbjct: 201 AQGIVEEKSLLLERCGLQLIPKDSSWFQFFAKKNSAADRFSFSMSNETADFYYRAIHSEG 260

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                         + +               M   I   L    +  +  L        
Sbjct: 261 VL----------ISAPDGDIELPAVFPYSPAYMNFIIAVALAWITNVPMDRLEQVSQSLF 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                          +I+++YNA+P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 311 LPAMRFEQQEHNGIRVINDAYNASPDAMLAALDAVPV--PPEGGKIIFILGHMAELGRYS 368

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
              HI  A          ++  G     ++D +  +   + +   +  +   +++ +  G
Sbjct: 369 DECHIAAARKAV-TKAHIIFFVGEKWFPVRDIVRDADCQIGFYSAVSEIMDAVKALVQQG 427

Query: 445 DVVVVKSSNSCGFYRLI 461
           DVV++K S S     L+
Sbjct: 428 DVVLLKGSRSLELETLL 444


>gi|228470384|ref|ZP_04055287.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
 gi|228307966|gb|EEK16849.1| Mur ligase domain protein/alanine racemase [Porphyromonas uenonis
           60-3]
          Length = 843

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/479 (21%), Positives = 185/479 (38%), Gaps = 18/479 (3%)

Query: 1   MNPLW-----TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDG 53
           M P++     T  ++L+ ++     +V +  +  I  DSR +       FFA++    DG
Sbjct: 1   MTPIYNTIMSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDG 60

Query: 54  HDFILHAVQKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           H +I    + G     +               +  V + L AL ++A   R+R    +I 
Sbjct: 61  HKYIPQLYEHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKT  KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S  
Sbjct: 121 ITGSNGKTVVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMP 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E+  L  ++RP + ++T I  AH  NF  + +    K ++F           + D    
Sbjct: 181 MEMLRLQRIIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEI 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           +              +S    K               + + VQ   +S  V         
Sbjct: 238 QRGIDNLGLSDKAIGWSLTPGKAYYHVSYSHS-GDGTTIITVQHADESSTVTIPFADQAS 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN    L ++ +L          L+ F   E    R      Q    LI+++YN +  S
Sbjct: 297 IQNATHCLCLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINS 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ A+    Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  + 
Sbjct: 357 LRIALDFQKQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELC 416

Query: 413 ALKDALPRSIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +D   RS      + ET D L     + +       ++VK +    F R++  L ++
Sbjct: 417 NYQDYFQRSGEGKTAFYETTDQLLADDLLGTITHAE--ILVKGARQFQFERIVQHLAKQ 473


>gi|41407999|ref|NP_960835.1| hypothetical protein MAP1901c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41396353|gb|AAS04218.1| MurF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 519

 Score =  185 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   +   + G           +  V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106
                       V      V +   + +P       D   AL  +       S       
Sbjct: 60  HAE-------AAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R   D D+ + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+
Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270
           E+ + +  +G + LN DD     +   + A  ++   +                  E + 
Sbjct: 233 ELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVGRAEHTEAGPSDVWAGPVSLDELAR 292

Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                +       +   V     G H   N L    +     A V+  + AL+   P   
Sbjct: 293 PGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379
              R + +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M 
Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430
           E+G+ + + H  +  +    ++S + + G    V A+                       
Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470

Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453
           +     +++ L  GDVV+VK+SN
Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493


>gi|111221626|ref|YP_712420.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
 gi|111149158|emb|CAJ60841.1| D-alanine:D-alanine-adding enzyme [Frankia alni ACN14a]
          Length = 467

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 126/477 (26%), Positives = 190/477 (39%), Gaps = 23/477 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL T  ++  A  G    +     V G     SR + P   F A+ G   DGHDF   
Sbjct: 1   MIPL-TLAEVAVATGGRLDAVADPAAVVGAVAVDSRQVGPGTLFVALVGARSDGHDFAA- 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
                   V      V +   L +P   V D   AL  LA   R  ++AT++A+TGS GK
Sbjct: 59  ------AAVAAGAPAVLAARPLGVPAVVVADPSAALAALAAHVRDIARATVVAVTGSAGK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK++L   L+ +  T A  GS+NN IG+PLTL R   D  F + E+G   LG I  L 
Sbjct: 113 TTTKDLLADLLAELGPTVAAPGSFNNEIGLPLTLLRTEPDTAFVVLEMGARGLGHIATLC 172

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + RP +  +  +  AH+  +  G   IA+AK E+ E  +    +  +      + L A 
Sbjct: 173 AVARPSVGAVLNVGSAHVGEYTDGRLGIAAAKGELAEAAQDAVILNAD------DPLVAA 226

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + +FG+   AD +    +           L                 Q    
Sbjct: 227 MAPRARGEVITFGEDAAADVRGAGVRVDPLG-HASFDLLAGGERHRVTLGLVGAHQVPNA 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  L   +  A  A ++   +     R           +++++YNANP SM+AA++
Sbjct: 286 LAAAAVALRLGLSPARTAAALGAARARSRWRMEVTRTAAGVVVVNDAYNANPESMRAALA 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +   G GR IAVLG M E+G+ +   H  L  +     I  V   G     +  A 
Sbjct: 346 TLVDMR--GAGRAIAVLGGMGELGDAADDAHDALGRLAVRLGIDQVIAVGPAARRIHLAA 403

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
                      +    D     + +     DVV+VK+S S G  R+   ++  F  +
Sbjct: 404 SLEGSWDGESRWVADADEAVATVVALARPDDVVLVKASRSYGLERVAEDVVTRFGVV 460


>gi|313157382|gb|EFR56805.1| alanine racemase [Alistipes sp. HGB5]
          Length = 792

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/470 (20%), Positives = 166/470 (35%), Gaps = 54/470 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI------APQEAFFAIKGPHYDGH 54
           MN  +    +     G   G      V  +  DSRS+       P   F A++G ++D H
Sbjct: 1   MN--YRLSRIAAICGGKFSGC--DSEVRSVVTDSRSLSCELGCRP--MFVAMRGANHDSH 54

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI     +G    +V   + AS  +       VD+ + AL +LA   R + + T++ IT
Sbjct: 55  DFIADMQSRGVRAFLVERGVEASSCTGECGFVQVDNAIEALQRLAAYHRAQFRGTVVGIT 114

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKT  KE +   L    K Y    SYN+ +GVPL++  +  D +  IFE G+S  GE
Sbjct: 115 GSNGKTVIKEWIAEELPEGMKYYRSPKSYNSQLGVPLSVLMLEGDEELAIFEAGISKPGE 174

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  L  ++RP   + T+I  AH  NF  +E+                           E 
Sbjct: 175 MERLERIIRPDAVIFTSIGDAHQENFINLEQ------------------------KCDEK 210

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +     A  I     +             ++  + +      +                 
Sbjct: 211 MILARSASKIIYHSYYEPLGRMVAAHFADRRPVDAASYPEVPESVIGNAASRRN------ 264

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                     I+ A  D        F        R           LI+++YN +  S+ 
Sbjct: 265 --------AQIVEAFCDAMRYPAPSFAGAPSVAMRLEVKEGINDSILINDAYNLDLNSLA 316

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+  L  ++         VL D+ + G      +  +A +++   I  +   G  +   
Sbjct: 317 LALDYLHSVALSRRR--TLVLSDISQSGLSDDELYGRVAGMVARAGIDFLIGIGPRLKRY 374

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                 +    +    D     I    V G  +++K +    F +L++LL
Sbjct: 375 AALF--ACDKEFFTATDECVARINRDAVAGRAILLKGARDFRFEKLVHLL 422


>gi|46446265|ref|YP_007630.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 841

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/439 (22%), Positives = 169/439 (38%), Gaps = 13/439 (2%)

Query: 25  GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             ++ I IDSR + +    F A+KG   DGHDF+  A + GA   +V+           I
Sbjct: 23  VIIDQIIIDSRHVNSSNALFVALKGEKQDGHDFVQQAAELGAKYALVSEQWTPPFNLKPI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V   L AL ++A A RL+    II ITG+ GKT  K++L   LS+ K   A  GS+
Sbjct: 83  FLLKVKSPLSALQEVAKAYRLQLPTKIIGITGTYGKTMVKDLLFQLLSTEKNVCASPGSF 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N+ IGV L+L  +  D +  I E  +S   E+  L  L+RP   ++T I   HL+  + I
Sbjct: 143 NSQIGVALSLLTIQKDQELAIIEAAISKKQEMDILADLIRPDYTILTPIGKKHLATLNDI 202

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + I     ++     KTG + L  D      LK    +  I    S        F     
Sbjct: 203 DTITYETLKLVWATSKTGWVLLPNDIYQQFHLKNNLFSSYIWDRDSKCLPHAIPFSKNSP 262

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                Q       + +      +    ++         +  I   ++    +        
Sbjct: 263 FASHYQLTFPDSSRYEQQMTNGYSYFLNLINITSKAAWLSGIKAENIKKIFEYY------ 316

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R     +    T I+E+  ++P S+  A       +P      I + G M     
Sbjct: 317 YPEPSRTEIWKSPIGATFINETSCSDPHSIDRAFKHFEHAAPSQRK--IFIFGGMKGNIS 374

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLAL----KDALPRSIHVHYSETMDGLFLFIQS 439
            +Q+++  + + +S  ++ H+ L G             +     +   +  +    ++Q 
Sbjct: 375 FAQNYYTKIGKTISKAHLRHLLLFGHQPFKTLIDEVKKISPETEILCFKRCEEALNYLQK 434

Query: 440 SLVDGDVVVVKSSNSCGFY 458
           +L   D++++K      F 
Sbjct: 435 NLQSQDLILIKGDRKIPFE 453


>gi|300774542|ref|ZP_07084405.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
 gi|300506357|gb|EFK37492.1| Mur ligase domain protein/alanine racemase [Chryseobacterium gleum
           ATCC 35910]
          Length = 815

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 184/469 (39%), Gaps = 27/469 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   + +      IG      +  I+ DSR I      AF AI      G  FI 
Sbjct: 1   MN--YTVQHIAEITNAQIIG-DGNLLIKNIAYDSRIIYSIKNTAFIAINTHKNSGEKFIE 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+ +G  +++            +I    V++ +  L KLA      S    I ITGS G
Sbjct: 58  SAMDRGIKVIISEHHYPEFE---NITWIIVENSVAFLQKLAKYHFENSHLQSIGITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   L +   T     S+N+ IG+PL+L ++      GIFE+G+S   E+  L
Sbjct: 115 KTILKEWLYQCLWNEFPTVKSPKSFNSQIGLPLSLLQINDSHQLGIFEVGISKPHEMEKL 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            ++  P I ++T I  AH +NFS  EE+   K  +F+  E    I  N D+   +     
Sbjct: 175 ENIFHPQIGLLTHIGTAHAANFSSEEELIDEKIRLFKNSE---VIIYNGDNDLVDQKIKN 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S++      Y F K              S  S  E  +     E +           +  
Sbjct: 232 SYSDKKLIAYGFKKENQVF-------IKSNISKDENIIVEYFGEEISFPAHQRDEATLTN 284

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + ++++L        K +   +  +    R           +I++S+N +  S+    +
Sbjct: 285 AMALITVLKELNIENKKIVEKINLLKAVEMRLEAIEGNKGNIVINDSFNLDLDSL---KT 341

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  ++ + + ++  VL D+  +   ++  + ++AE+++  N   V+L G  +    +  
Sbjct: 342 ALQFLNEYNKAKKSLVLTDIVGVSTNAKELYEEVAELVNDQNFDSVFLIGNEISKFSELF 401

Query: 419 PRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +         L     +     +  ++++K +      +L ++L 
Sbjct: 402 KAKTYTFI--DTKELIESKHLTEI--ENQIILLKGARKFEIEKLKDILE 446


>gi|288799885|ref|ZP_06405344.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288333133|gb|EFC71612.1| Mur ligase domain protein/alanine racemase [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 825

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/471 (21%), Positives = 194/471 (41%), Gaps = 16/471 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           M   +T   +   I     G      V  +  DSRS+  A +  FFAIK    DG  ++ 
Sbjct: 1   MT--YTIERITALIGARRYGRANASIVF-LLTDSRSLCFAEETLFFAIKTMSNDGSKYLS 57

Query: 59  HAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              ++G    VVN      ++   +     V + L AL +LA   R      +I ITGS 
Sbjct: 58  DLYKRGVRNFVVNEVPENYAVLYPNSNFLKVSNTLDALQRLAERHRDEFAIPVIGITGSN 117

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE +   LS          SYN+  GVPL++  +  +   G+FE G+S  GE+  
Sbjct: 118 GKTMVKEWIYQLLSPSLIVTRSPRSYNSQTGVPLSVWLLTNNTQLGVFEAGISEPGEMDS 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +++P I ++TTI  AH  NF+ +EE  + K ++        T       +    L  
Sbjct: 178 LRDIIQPTIGILTTIGDAHQENFTSLEEKCNEKLKL-------FTDSKLLIYNEDNTLVK 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +           F  S+  +       +  + +   V           + I +    ++ 
Sbjct: 231 RCVEQFSFEGQRFSLSRQNEKSTLYVSKVLKNNADSVIYYSYKGVEGSYKIPFIDEASIE 290

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            ++  ++I                  E    R      +   TLI++SYN++  S+  A+
Sbjct: 291 NSIECLAIGLYLGIDKNAIEERMASLEPVAMRLEVKEGRHDCTLINDSYNSDINSLDIAL 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             +S+     E +RI +L D+ + G+     + +++ ++   +++     G  + A +D 
Sbjct: 351 DFMSRRPDAKERQRILILSDIYQTGKPLSQLYSEVSALMKQRSVNQFIGIGPEIYAHQDC 410

Query: 418 LPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +  +  +  T+       + ++L +  ++++K +   GF ++ +LL+++
Sbjct: 411 FQQQ-NSSFFLTVQDFIDSGLFTNLRNN-IILLKGARRFGFDKITDLLVKK 459


>gi|296134860|ref|YP_003642102.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
 gi|295794982|gb|ADG29772.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomonas intermedia
           K12]
          Length = 975

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 120/475 (25%), Positives = 190/475 (40%), Gaps = 38/475 (8%)

Query: 4   LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59
           L +  +L   I      IG      V+ I  DSR + P   F A++G  +D HDF+    
Sbjct: 496 LCSLGELRDWIGPEARLIGEA-DVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA 554

Query: 60  -------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
                    ++G                  +P     D L A   LA   R +    +IA
Sbjct: 555 AAGARALLAEQGVAAC-------------GLPGIEAPDTLRAFGLLARGWRRQQTLPLIA 601

Query: 113 ITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +TGS GKTT  +ML     A     +  A  G++NN +G+PLTL R+       + ELGM
Sbjct: 602 VTGSNGKTTVTQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGM 661

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI +L  L  P +A++      H      +E +A     +   L +TG      DD
Sbjct: 662 NHPGEIAWLASLAEPTVALVNNAQREHQEFMHSVEAVAHENGSVLAALPQTGVAVFPADD 721

Query: 230 SFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHG 287
           +   +  A++    +       G     + ++       +    +++       EV    
Sbjct: 722 AQTAIWVAQAAGRRVLRFALREGAEAGVEAEVSGHAFYRQGQLRLQLHTPTGHAEVGLQL 781

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESY 346
           +G H A+N L          A +D   + L  F P  GR    R    +     LID+SY
Sbjct: 782 LGRHNARNALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADDRTLLLIDDSY 841

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP S++AAI VL+++     GR + +LGDM E+G+   +FH ++    +   ++ +W 
Sbjct: 842 NANPDSVRAAIDVLAELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWA 897

Query: 407 SG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            G                   +   +    L   + L + D V+VK S      R
Sbjct: 898 CGAMTAQAVAAAQAAGLAAAKHQPDLMDFTLDAAA-LREFDTVLVKGSRFMRMER 951



 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 143/474 (30%), Gaps = 45/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +LQA++   +           + DSRS+ P E F A  G   D   F+  A+  GA 
Sbjct: 8   VDTVLQALRALGVAADATW-----TADSRSLQPGEVFVAWPGAARDPRQFVAQALAAGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
             +V  +     G     +  VD +      LA A          ++A+TG+ GKT+   
Sbjct: 63  AALVEAEGAQYFGFTDPRILAVDGLKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCAL 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELG 168
               AL++  +    IG+     G P  L          +                  + 
Sbjct: 123 WAAQALNAAGQRCGVIGTLGA--GWPDALQPTGFTTPDPVRLQTILARLREQGALWCAIE 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S +G           H A  T +   HL     +   A AK  +F          L+ D
Sbjct: 181 ASSIGLDEHRLAGCAIHAAAFTNLTQDHLDYHGDMAAYARAKRALFV-WPGLQHAVLDID 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +   +         + + +      AD+      Q S    + +        +    +
Sbjct: 240 DPYAASVLLADCRSRGQQVQTTALIAKADWCAEDVVQTSTGQRLTLVHHHHRHALDLPVL 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N+   L + ++L           +          R +     G    + + Y  
Sbjct: 300 GAFNLRNL---LVVAALLHTTGLDDAAIAAALRTVRAVPGRMQMLGGIGAPLAVID-YAH 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++  A+  L  ++   +G+   V G     G    +    L    +  +   V L+ 
Sbjct: 356 TPDALYKALQALRPVTAKRKGKLWCVFGA----GGDRDARKRPLMAQAAEAHADRVVLTS 411

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   G  +  L   L +       E          S     DVV++  K 
Sbjct: 412 DNPRSEAPGAILQDLLAGLQQPAQALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465


>gi|220904380|ref|YP_002479692.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868679|gb|ACL49014.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 472

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 115/478 (24%), Positives = 196/478 (41%), Gaps = 30/478 (6%)

Query: 6   TFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T ++    +   G          +  +  DSR   P   F  + G   DGHDF   AV++
Sbjct: 4   TINEAAVCLGLPGTLP-DAENTVLTSVVTDSRDAGPGALFVCVPGSRVDGHDFAAAAVRQ 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+        +  +++PV  V D + AL +LA   R R+KA ++A+TG+ GKTT K
Sbjct: 63  GAAAVLA----AGPLPGINVPVLVVPDTVKALGQLAGLWRDRTKARVVAVTGTAGKTTLK 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           E+L   LS   KT     ++NN IG+P  +     D  F I E G+S  G++  L  ++R
Sbjct: 119 EVLAQVLSLGGKTARNAMNHNNQIGMPRAVLGTDGDEKFWIMEAGISQQGDMDDLGSVLR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+      H       + +A  KA + + L K G   +  D      L  ++ A  
Sbjct: 179 PDIAVVLNAGTGHTEGLGE-KGVAWHKARLLKYLAKGGKGLVCADYPD---LVREARATE 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI- 302
               +  G  ++A+F+        + + +          +   G  + +        G  
Sbjct: 235 TDICFFSGSGRDAEFRAVYAGAAPQGAAVTPSDAYGLYRLWLGGREFDVTAPFRGAYGAE 294

Query: 303 ----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V+ +   +   ++A+     +     +    +  G + LID++YNANP SM   + 
Sbjct: 295 NVAAVAAVAHMLGLDLQAIRQGLAQARMPAQRFNQVQAGSWLLIDDTYNANPLSMGRMLD 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             ++ +       +AVLG M E+G  +   H  L   L+  N S +   G H   ++  L
Sbjct: 355 AAAERAA--GRPFVAVLGAMLELGSQAAMEHEALGRRLAGLNPSAIVWKGLHAEDVRKGL 412

Query: 419 PRSIH----------VHYSETMDGLFLFIQSS--LVDGDVVVVKSSNSCGFYRLINLL 464
             + +            + +T   L  +   +     G VV+ K S S     L+ +L
Sbjct: 413 TLAGYAGPWQVVTDAGEFMKTWQTLQDYGLENKAAKSGGVVLFKGSRSNRLETLVAVL 470


>gi|227497586|ref|ZP_03927809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832955|gb|EEH65338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 497

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 114/493 (23%), Positives = 188/493 (38%), Gaps = 37/493 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQ------------GFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           T  ++     G  +                   V  +  DSR       F AI G   DG
Sbjct: 5   TLREIAAMTGGVLLAPGGDEAGGSLQAHDGVTRVTDVVTDSRQAEEGSLFVAIVGERTDG 64

Query: 54  HDFILHAVQKGAGLVVVNTDMV-------ASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           H  +  A   GA   +V+           A     S+P+  V D + AL  LA +   + 
Sbjct: 65  HRHVPQAAAAGARAALVSNVEAVRAAMAEAGRDPESLPLVIVPDTVAALGGLARSHLAQL 124

Query: 107 K---------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +          ++IA+TGSVGKTTTK++    L++   T A + S+NN IG+PLT+ R  
Sbjct: 125 REQASSRGETLSVIAMTGSVGKTTTKDLTRQILAAQAPTVAPVASFNNEIGLPLTVLRAD 184

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + + E+G S  G I +LT +     A +  I  AH+  F  ++ +A AK+EI  GL
Sbjct: 185 HTTRYLVLEMGASGSGHIAYLTSIAPLDAAAVLMIGHAHMGGFGSVDGVARAKSEIVTGL 244

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             TG   LN DD     ++  +    +    S     +      +  + +          
Sbjct: 245 LPTGVAVLNLDDPRSAAMRELAPGRVLTFSASGDPRADLRASAVELDEQAHAVLDLHLPG 304

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +   +     G H   N L   G+      D    ++AL+                  G
Sbjct: 305 ARPERLRLGLPGRHNVTNALAAAGLALAAGLDPSQVLQALA---GAGLESPHRMDVRECG 361

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +ID+SYNAN  S     ++ +  +  G+ RR+ ++ +M E+G  S + H    E+ +
Sbjct: 362 GVLVIDDSYNANIDS--MTAALEALPALAGQRRRVVIISEMLELGSASHADHTRTGELAA 419

Query: 398 LYNISHVWLS-GFHVLALKDALPRSIHVHYSETMDGLFLFI---QSSLVDGDVVVVKSSN 453
                 +         A + A    +H             +    S L   D V++K S+
Sbjct: 420 AAGAQVLVTIGQGAAPAAQAARAAGVHTIELPDAQAAIELLDGGHSPLRPADAVLIKGSH 479

Query: 454 SCGFYRLINLLLE 466
             G +R+ + L  
Sbjct: 480 GSGAWRVADHLTA 492


>gi|254775004|ref|ZP_05216520.1| hypothetical protein MaviaA2_10069 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 519

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   +   + G           +  V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIDL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106
                       V      V +   + +P       D   AL  +       S       
Sbjct: 60  HAE-------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R   D D+ + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+
Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270
           E+ + +  +G + LN DD     +   + A  ++   +                  E + 
Sbjct: 233 ELPQAVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGPSDVWAGPVSLDELAR 292

Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                +       +   V     G H   N L    +     A V+  + AL+   P   
Sbjct: 293 PGFTLYHRHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379
              R + +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M 
Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430
           E+G+ + + H  +  +    ++S + + G    V A+                       
Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470

Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453
           +     +++ L  GDVV+VK+SN
Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493


>gi|294672917|ref|YP_003573533.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
 gi|294472302|gb|ADE81691.1| alanine racemase/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
           alanine ligase [Prevotella ruminicola 23]
          Length = 792

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/439 (22%), Positives = 173/439 (39%), Gaps = 17/439 (3%)

Query: 32  IDSRSI--APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGV 88
            DSRS+    +  FFA+K    DGH +I     +G    VV                  V
Sbjct: 3   TDSRSLCFPEETLFFALKTQRNDGHRYIQDLYNRGVRQFVVEQVPEAYETLYPQANFLRV 62

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              L AL +LA   R      I+ ITGS GKT  KE L   L   ++      SYN+ IG
Sbjct: 63  PHTLAALQRLAERHRDEFSLPIVGITGSNGKTMVKEWLYQLLLPSQRIVRSPRSYNSQIG 122

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VPL++  +    + GIFE G+S  GE+  L  +++P I V+T++  AH  NF  +EE   
Sbjct: 123 VPLSVWLLNEQTEVGIFEAGISQPGEMMALRDIIQPTIGVLTSLGAAHQENFRSMEEKCM 182

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K E+      T  +    D+        + +  G K  +S       D Q   + +  E
Sbjct: 183 EKLELMH---DTEAMVYCSDNDIVSRCIRRMNYKGEKISWS-----TCDQQAAFYVKSVE 234

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S +    + +        I     ++ +    +   L          +    P      
Sbjct: 235 NSHITYIWKEEENCFDIPFIDEASIEDCITCAAVALRLGLTPGDLADRMPKLEPV---AM 291

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R      Q    LI++SYN++  S+  A+  ++        +R  +L DM + G   +  
Sbjct: 292 RLEVKEGQRGCILINDSYNSDINSLDIALDFMN--RREELKKRTLILSDMFQSGLSPEKL 349

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +  ++E+     I+     G  + A  D +  +    +++    L     + L   ++++
Sbjct: 350 YAQVSELAVKRGITKFIGIGAQLTAQADKIQIADKQFFADVNHFLGSDAFTGLR-NEMIL 408

Query: 449 VKSSNSCGFYRLINLLLEE 467
           +K +   GF ++   L ++
Sbjct: 409 LKGARPFGFDQITEQLEQK 427


>gi|118467198|ref|YP_881536.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
 gi|118168485|gb|ABK69382.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium avium 104]
          Length = 533

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 116/503 (23%), Positives = 189/503 (37%), Gaps = 60/503 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIG----IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   +   + G           +  V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIDL-TVAQIADIVGGTLADITAPDAARRRVTGTVEFDSRAVGPGGLFLALPGARTDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS------- 106
                       V      V +   + +P       D   AL  +       S       
Sbjct: 60  HAE-------SAVAAGAVAVLAARPVGVPAIVAPPVDAADALAGVLEHDADGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TI+ ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLARAVAAELVAGGLTIVGITGSSGKTSTKDLVAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R   D D+ + E+   H G I  L  +  P + V+  +  AHL  F   E IA  K+
Sbjct: 173 TVLRATADTDYLVLEMSARHPGNIAALAEIAPPAVGVVLNVGTAHLGEFGSREAIARTKS 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS- 270
           E+ + +  +G + LN DD     +   + A  ++   +                  E + 
Sbjct: 233 ELPQSVPASGVVVLNVDDPTVAAMAEVTAARVVRVSRAEHTEAGPSDVWAGPVSLDELAR 292

Query: 271 -----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                +       +   V     G H   N L    +     A V+  + AL+   P   
Sbjct: 293 PGFTLYHSHAGGTRQARVQLGVSGDHQVGNALCAAAVALECGATVEQVVAALAGAGPV-- 350

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMC 379
              R + +      T+ID++YNANP SM+A +  L+ I            R  AVLG+M 
Sbjct: 351 SRHRMQVSTRGDGVTVIDDAYNANPDSMRAGLQALAWIARGGAEPGAPARRSWAVLGEMA 410

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL-------PRSIHVHYSETM 430
           E+G+ + + H  +  +    ++S + + G    V A+                       
Sbjct: 411 ELGDDAIAEHDRIGRLAVRLDVSRLVVVGTGRSVSAMHHGAVMEGSWGSADKGAVNVPDA 470

Query: 431 DGLFLFIQSSLVDGDVVVVKSSN 453
           +     +++ L  GDVV+VK+SN
Sbjct: 471 EAALELLRAELQPGDVVLVKASN 493


>gi|294338814|emb|CAZ87148.1| putative murein precusor biosynthesis bifunctional protein
           [UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase ( MurF);
           UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase (MurE) ] [Thiomonas sp. 3As]
          Length = 975

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 121/475 (25%), Positives = 192/475 (40%), Gaps = 38/475 (8%)

Query: 4   LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59
           L +  +L   I      IG   +  V+ I  DSR + P   F A++G  +D HDF+    
Sbjct: 496 LCSLGELRDWIGPEASLIGEA-EVAVSAIETDSRKLTPGALFVALRGARFDAHDFLPQAA 554

Query: 60  -------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
                    ++G G                +P     D L AL  LA   R +    +IA
Sbjct: 555 AAGARALLAEQGVGAC-------------GLPGIEAPDTLRALGLLARGWRRQQTLPLIA 601

Query: 113 ITGSVGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +TGS GKTT  +ML     A     +  A  G++NN +G+PLTL R+       + ELGM
Sbjct: 602 VTGSNGKTTVTQMLASILAAWQGQDRRLATQGNFNNEVGLPLTLLRLRPQHQAAVVELGM 661

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           +H GEI +L  L  P +A++      H      +E +A     +   L +TG       D
Sbjct: 662 NHPGEIAWLASLAEPTVALVNNAQREHQEFMHSVEAVAHENGAVLAALPQTGVAVFPAAD 721

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHG 287
           +   +  A++    +       +++                Q  +++       EV    
Sbjct: 722 AQAAIWVAQAAGRRVLRFALREEAEADVEAEVSGHAFYRQGQLHVQLHTPAGHAEVGLQL 781

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR-CALNQGFFTLIDESY 346
           +G H A+N L          A +D   + L  F P  GR    R    ++    LID+SY
Sbjct: 782 LGRHNARNALAATAAALAAGAPLDAICRGLEAFAPVAGRLVPRRLRCADEHTLLLIDDSY 841

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP S++AAI VL+++     GR + +LGDM E+G+   +FH ++    +   ++ +W 
Sbjct: 842 NANPDSVRAAIDVLTELP----GRSLLLLGDMGEVGDNGPAFHAEVGTYAAQRGVAALWA 897

Query: 407 SG--FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            G                   +   +    L   + L + D V+VK S      R
Sbjct: 898 CGAMTAQAVAAAHAAGLAAAKHQPDLMDFTLEAAA-LREFDTVLVKGSRFMRMER 951



 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/450 (17%), Positives = 134/450 (29%), Gaps = 40/450 (8%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           S DSRS+ P E F A  G   D   F+  A+  GA   +V  + V   G     +  VD 
Sbjct: 27  SADSRSLQPGEVFVAWPGAARDPRQFVTQALAAGAAAALVEAEGVQHFGFTDPRILAVDG 86

Query: 91  VLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +      LA A          ++A+TG+ GKT+       AL++  +    IG+     G
Sbjct: 87  LKALAGPLAAAWYGHPSEVVKLLAVTGTNGKTSCALWAAQALNAAGQRCGVIGTLGA--G 144

Query: 149 VPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTI 192
            P  L          +                  +  S +G           H A  T +
Sbjct: 145 WPDALQPTGFTTPDPVRLQTILARLREQGALWCAIEASSIGLDEHRLAGCAIHAAAFTNL 204

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +   A AK  +F          L+ DD +   +           + +   
Sbjct: 205 TQDHLDYHGDMAAYARAKRALFV-WPGLQHAVLDIDDPYAASVLLADCRSRGLQVQTTAL 263

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               D+      Q S    + +        +    +G    +N+   L + ++L      
Sbjct: 264 IAKTDWCAEDVVQTSTGQRLTLVHHHHRHALDLPVLGAFNLRNL---LVVAALLHTTGLD 320

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                +          R +     G    + + Y   P ++  A+  L  ++   +G+  
Sbjct: 321 DAAIAAALRTVRAVPGRMQMLGGIGAPLAVID-YAHTPDALDKALQALRPVTAKRKGKLW 379

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDALPRSIH 423
            V G     G    +    L       +   V L+         G  +  L   L +   
Sbjct: 380 CVFGA----GGDRDARKRPLMAQAVEAHADRVVLTSDNPRSEAPGAILQDLLAGLQQPAQ 435

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               E          S     DVV++  K 
Sbjct: 436 ALLIEDRAAAIAQTLSHAAVHDVVLIAGKG 465


>gi|313886643|ref|ZP_07820354.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312923885|gb|EFR34683.1| alanine racemase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 835

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 13/471 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           + T  ++L+ ++     +V +  +  I  DSR +       FFA++    DGH +I    
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60

Query: 62  QKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + G     +               +  V + L AL ++A   R+R    +I ITGS GKT
Sbjct: 61  EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  L  
Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLRLQR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP + ++T I  AH  NF  + +    K ++F           + D    +       
Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEIQRGIDNLG 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S    K               + +  Q   +S  V          QN    L
Sbjct: 238 LSDKAIGWSLTPGKAYYHVSYSHSGDCT-TTITAQHADESSTVTIPFADQASIQNATHCL 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++ +L          L+ F   E    R      Q    LI+++YN +  S++ A+   
Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  +   +D   R
Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416

Query: 421 SIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      + ET D L     + +       ++VK +    F R++  L ++
Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE--ILVKGARQFQFERIVQHLAKQ 465


>gi|111115130|ref|YP_709748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|216263734|ref|ZP_03435728.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
 gi|110890404|gb|ABH01572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-
           diaminopimelate--D-alanyl-D-alanine [Borrelia afzelii
           PKo]
 gi|215979778|gb|EEC20600.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia afzelii
           ACA-1]
          Length = 463

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 192/444 (43%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAP----QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    + + D  +        + 
Sbjct: 32  SLDSREINDNNINGSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     R+    IAITGS GKTTTKE+L   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQTLASFLIKRTSFKRIAITGSNGKTTTKEILYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGISYVGEMDLLSQILKPEIVIITNISYAHMQAFR 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           G++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ N      
Sbjct: 212 GLQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDYENLNI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        + L    
Sbjct: 267 -KSFSFSEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIETT 325

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                 K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 326 ----FQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           GE +   H DL +     N   ++L G   L ++D+      +++Y    D    F   S
Sbjct: 380 GEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVGKYLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|325954628|ref|YP_004238288.1| alanine racemase [Weeksella virosa DSM 16922]
 gi|323437246|gb|ADX67710.1| Alanine racemase [Weeksella virosa DSM 16922]
          Length = 824

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 203/465 (43%), Gaps = 16/465 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQ 62
           +   +L Q +    IG   Q  +     D+R+I       F  +KG    G  ++  A Q
Sbjct: 7   YNLGELAQILNAKLIGDKEQT-IEEYYFDTRTIVCPTNGLFITLKGLQKSGAYYLDEAYQ 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG    +V++  + +          V DVL AL  LA   R R    +  ITGS GKT  
Sbjct: 66  KGIRSFLVSS--IPAQPKDGANYLLVQDVLVALQMLAKHHRQRFTLPLFGITGSNGKTVV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE L   L +         SYN+ +GVP ++  +    D GIFE G+S   E++ L  ++
Sbjct: 124 KEWLYQLLWNEYNIARSPKSYNSQLGVPFSVLLIDEHNDLGIFEAGVSQPNEMQALRCIL 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P  A++T I  AHL NF     +A  K ++    E    I    DD   E L + +   
Sbjct: 184 QPTTAILTNIGSAHLENFLDRRSLALEKIQLL---EAAQEIIYPADDELIEELISSNPVF 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K   +FGKS  A  QL++++  + QS +++++ G    ++         QN L+    
Sbjct: 241 DSKRRITFGKSDKATVQLKQYQTINGQSSIDIEISGVLFNIIIPFTDQASIQNALICCAS 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  +++          P E R +      N     LI++++N++  S+K A+  L+Q
Sbjct: 301 IYSLNKNLNDYKSKFEKLLPIEMRLEIKEAINN---SILINDAFNSDLISLKNALDTLAQ 357

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
            S   +   + VL D+ +     +  +   AE+++ Y+ + + L G  + A K       
Sbjct: 358 QSRERK---VLVLTDILQSKLADKELYQKTAELVNPYHFTEIVLIGEKISAYKKLFKS-- 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +V    + D     IQ   +  +V+++K S      ++ + + ++
Sbjct: 413 YVRAFSSTDDFLRHIQHENIHNEVILLKGSRIFQLEKISDYIEKK 457


>gi|332300540|ref|YP_004442461.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
 gi|332177603|gb|AEE13293.1| Alanine racemase [Porphyromonas asaccharolytica DSM 20707]
          Length = 835

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 181/471 (38%), Gaps = 13/471 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFILHAV 61
           + T  ++L+ ++     +V +  +  I  DSR +       FFA++    DGH +I    
Sbjct: 1   MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY 60

Query: 62  QKGAGLV-VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + G     +               +  V + L AL ++A   R+R    +I ITGS GKT
Sbjct: 61  EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   LS   +      SYN+ +GVPL++  M  +    IFE G+S   E+  L  
Sbjct: 121 VVKEYLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEYTLAIFEAGISMPMEMLRLQR 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP + ++T I  AH  NF  + +    K ++F           + D    +       
Sbjct: 181 IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLF---VDADHFVYDADSDEIQRGIDNLG 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S    K               + +  Q   +S  V          QN    L
Sbjct: 238 LSDKAIGWSLTPGKAYYHVSYSHSGDCT-TTITAQHADESSTVTIPFADQASIQNATHCL 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++ +L          L+ F   E    R      Q    LI+++YN +  S++ A+   
Sbjct: 297 CLIGLLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQ 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +     + + +L D+ +  +L +  +  + E+++ Y  +     G  +   +D   R
Sbjct: 357 KQRTATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQR 416

Query: 421 SIHVH--YSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           S      + ET D L     + +       ++VK +    F R++  L ++
Sbjct: 417 SGEGKTAFYETTDQLLADDLLGTISQAE--ILVKGARQFQFERIVQHLAKQ 465


>gi|297559869|ref|YP_003678843.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844317|gb|ADH66337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate/
           D-alanyl-D-alanyl ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 482

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 132/492 (26%), Positives = 211/492 (42%), Gaps = 40/492 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L T   + +  Q  +IG    P+  V+G + IDSR   P   F A+ G   DGHDF 
Sbjct: 1   MIAL-TLDRIAEITQ-TAIGGSARPEAVVDGPVVIDSRQAVPGALFVALGGERVDGHDFA 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--------RLRSKAT 109
             AV  GA   +V+  + A          G + V+ AL +LA           R   +A 
Sbjct: 59  ASAVADGAAAALVSRPVDAPHLLAEG---GDEGVVAALTRLARHVARELSDPRRGAERAE 115

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GKTTTK+++   ++ +  T A  GS+NN IG PLT+ R      + + E   
Sbjct: 116 VVAVTGSSGKTTTKDLIAQVVARMGPTVAPAGSFNNEIGHPLTVLRADTGTRYLVLEAAA 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---- 225
             +G I  L  +  P I V+  +  AH+  F   + IA AK E+ E L            
Sbjct: 176 RGIGHIAHLCGVAPPRIGVVLNVGSAHMGEFGDRDAIAKAKGELVEALPPGAADRGAGGV 235

Query: 226 ---NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSM 281
              N DD     + A++ A     + ++G  ++A  +          +    + L G++ 
Sbjct: 236 AVLNADDPRVNAMAARTRA----RVVTYGLGEDATVRATDVVMRETGAPSFTLHLAGRTA 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G H   N L    +   L   VD   +AL    P                 TL
Sbjct: 292 RVELALVGAHQVHNALAAAAVADELGMGVDEIAEALGAATPVSRWRM---EVTEHAGATL 348

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ++++YNANP SM+AA++ L  ++   + R IAVL  M E+GE     H  + E+ +   +
Sbjct: 349 VNDAYNANPESMRAALTTLGALA--RDRRSIAVLAHMAELGEGGGVEHERIGELAARTGV 406

Query: 402 SHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +H+ + G     +      +               +      +++ +  GDVV+VK S  
Sbjct: 407 AHLVVVGEAAEGIAVGAEGAARQGLWQGECVRVADVHEAAAAVRARMRTGDVVIVKGSRV 466

Query: 455 CGFYRLINLLLE 466
            G  R+I+L+ E
Sbjct: 467 AGLERVIDLITE 478


>gi|218296765|ref|ZP_03497471.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
 gi|218242854|gb|EED09388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermus
           aquaticus Y51MC23]
          Length = 436

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/458 (20%), Positives = 174/458 (37%), Gaps = 42/458 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   + +A  G        G V  +   S  +     F A+ G    G +F   A+ KGA
Sbjct: 18  TPEWVAEATGGRLHPGG--GPVRDLHWHSGQVGEGFLFVALPGSRAHGREFAGEALAKGA 75

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTT KE 
Sbjct: 76  SLVLSDRPGRAT--------VEVEDPYKALIRLGRALRDLFPGPVVAVGGSSGKTTAKEA 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L       A  G+ N    +     ++P +    + ELG+  +GE+  L  L RP 
Sbjct: 128 LAQGL----GFPAPEGNQNTAPPLARFFLKLPQEAPGAVVELGVDRVGEMAELMELARPD 183

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL  F  ++ +   +  + +                     A       +
Sbjct: 184 LAVLTALGEEHLLAFGDLKGVVEEEMGLLKAPM------------------ALVSQQAKE 225

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG   +             +    +  + +           +      +       
Sbjct: 226 VLLAFGHRVDWPTYGFGQATFRGEGLELLPQESRFRYRGLPVRVPYPGLGPALGALAAMA 285

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +   +  ++                  G    ++++YNANP S+KA ++ L+    
Sbjct: 286 AAEVLGWDLLEVAERLAHLRLPPGRMERREIGGVVFLNDAYNANPLSVKAGLAWLAAQP- 344

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GR+ AVLG+M E+ E +   H+++AE  +   ++ ++L G    A       ++   
Sbjct: 345 ---GRKWAVLGEMRELAEKALELHLEVAEEAARLGLTPLYL-GPFAKA-----QAALGGE 395

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
             E ++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 396 AVEDLEAALAWLKARVRPGDLVYLKASRAVGLERILEL 433


>gi|27381717|ref|NP_773246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|27354886|dbj|BAC51871.1| bll6606 [Bradyrhizobium japonicum USDA 110]
          Length = 459

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 132/492 (26%), Positives = 193/492 (39%), Gaps = 57/492 (11%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+ P+WT  ++ +A+     G  P   ++ ++ DSR + P   F A+ G    G  FI  
Sbjct: 1   MSGPIWTVAEVARALGA--AGSFPDTPIDFVTQDSRLVKPGSLFVALSGTPSGG--FI-- 54

Query: 60  AVQKGAGLVVVNTD-----------------MVASIGSLSIPVFGVDDVL-GALNKLAVA 101
                        D                 +   I  + +P   V D L   L  LA A
Sbjct: 55  ------SAFASARDGWEFADKAEAAGAAAMIVPHEIAGIRVPQIVVKDTLIDGLWGLARA 108

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           AR R    +I +TGS GKT+TKE L    ++    YA   S+NN  GVPLTL     D  
Sbjct: 109 ARARFNGPVIGLTGSAGKTSTKEFLAAYPNA----YASPSSFNNFWGVPLTLCNARPDAS 164

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+GM+  GEI  L+ L RP +A++  + P HL     +E I   K  I  GL + G
Sbjct: 165 LWVVEMGMNQTGEIARLSELTRPTVALVVNVQPVHLEKLGSLEAIRREKVSIALGLPEDG 224

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + L         LKA      +       +                +SW  V + GK  
Sbjct: 225 VLVLPAG------LKASEWKGKVVRFGEHAEVHEVTH------APHGESWQVVAMIGKKQ 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G        +               +                +        T+
Sbjct: 273 IAFSLTPGAPHRVQNALAALASIRAANLDAATLAIKLDRVGIMTGRGVEQAVGG---VTV 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+S+N NPAS+ AA+  L   +    GRRIAVLGDM E+G+ + S+H  L + L    I
Sbjct: 330 IDDSFNGNPASVAAALHSLQARNV-TGGRRIAVLGDMLELGDDAPSYHTGLTKHLD--GI 386

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFY-- 458
             V+  G  +  L + LP    + + +    L    + S L  GDVVVVK S    F+  
Sbjct: 387 DGVYCVGPLMRHLFEVLPSGKALGWHDDPATLKPGEVASLLKAGDVVVVKGSKKM-FWVN 445

Query: 459 RLINLLLEEFPA 470
           + +  L+    A
Sbjct: 446 KFVPGLVAALQA 457


>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 836

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/431 (20%), Positives = 168/431 (38%), Gaps = 12/431 (2%)

Query: 25  GFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             +  ISIDSR I +P   F A+KG  +DGH F+  A + GA   +V+ D         I
Sbjct: 23  AVIKHISIDSRRIFSPSTLFVALKGQAHDGHAFVAEAAKSGAKYALVHQDWQPPYPLKDI 82

Query: 84  PVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +  V+D L A   LA A R  R++  ++AI GS GKT  K++L   L+   K  A   S
Sbjct: 83  ILLRVNDPLKAFQALAKAYRQERTQCKVVAIGGSYGKTMLKDLLETMLAKRYKVMASPES 142

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
           +N+ IGVPL+L ++    +  + E   S  GE+  L  ++ P   ++T+I   HL     
Sbjct: 143 FNSQIGVPLSLFKIKDSHEIALVEAAFSEPGEMEVLADIIMPEHVILTSIGAKHLHTLGS 202

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +E  A    ++ + L+K     +     F   L+ +         ++   S+        
Sbjct: 203 LETTALEMVKLLQPLKKDNWALIPSTPLFGPHLQER---TSRCLFWTQPDSRLPHAISAS 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                   +          +        +    +        +      T  + L  +  
Sbjct: 260 TTPQMTLPYSVHFPDQYLFQGEMTKGFSYSLDLINTACKSAWLFDLPSHTISEVLQTYQ- 318

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R            I++ Y+++P SM  A++ L  ++ + +     + G +  + 
Sbjct: 319 --FEPMRTEIWKAPTGMLFINDPYSSDPQSMDQALTRLQYLASNEKK--TLIFGGLKGIS 374

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +  ++ +  +   ++  +I H+ L G      +L   L     + +  T+      ++  
Sbjct: 375 DQRENEYRRIGLAIAQSHIQHLMLIGPLSDFQSLVSKLLPHTTISFYPTIAHALRHLREV 434

Query: 441 LVDGDVVVVKS 451
                VV++K 
Sbjct: 435 EDPRQVVLIKG 445


>gi|15836432|ref|NP_300956.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
 gi|16752137|ref|NP_445504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|7189879|gb|AAF38747.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979273|dbj|BAA99107.1| muramoyl-DAP ligase [Chlamydophila pneumoniae J138]
          Length = 447

 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +    D +  +            + G +IDS+ + P + FFA+ G   DGH F+ HA
Sbjct: 1   MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQKVQPGDLFFALPGNATDGHQFLKHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   VV+ D      S  + +  VDD   AL +         + T++ ITGSVGKT
Sbjct: 60  ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE     LSSI KT+A   SYN+ + VPL+L     D D  I E+G+S  G ++ L  
Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P IAVIT I   H  +F                 E           S  +LL   S 
Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S    K +            ++     +  ++ E  +        +     L
Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISGDSVVIQTPEENYCLPIAFSYKPAYTNL 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L+  ++   + +    P+            +    +I+++YNA P +M AA+  L
Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   G+ I +LG M E+G  S+  H  +AE  +      ++  G   + ++  L  
Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            S  V +  +   +   ++     GDV+++K S +     L+
Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444


>gi|255038732|ref|YP_003089353.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Dyadobacter fermentans DSM
           18053]
 gi|254951488|gb|ACT96188.1| alanine racemase [Dyadobacter fermentans DSM 18053]
          Length = 824

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/446 (20%), Positives = 181/446 (40%), Gaps = 15/446 (3%)

Query: 30  ISIDSRSIA-PQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------ 81
           I  DSR ++ P    FFAIKG  +DGH F+      G    VV                 
Sbjct: 18  ILTDSRQVSFPGQSIFFAIKGERHDGHRFLPELYAAGVREFVVEEAAFTGALRETAATWD 77

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              ++ V   + AL +L  + R +    ++ I GS GKT  KE L   LS  +   A   
Sbjct: 78  DAQIWVVSSSIRALQQLVASKRKQFDIPVVGIAGSNGKTIVKEWLVQLLSPGRSIVASPK 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           SYN+ IGVPL++  +  +    IFE G+S   E+ +L  +++P I + T I PAH   F 
Sbjct: 138 SYNSQIGVPLSVWNLSKEHSLAIFEAGISKAHEMEYLQPVMQPTIGIFTNIGPAHDDGFR 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             ++  + K  +F  ++K       ++      L  K     ++T  S+G + +      
Sbjct: 198 SRKQKITEKLRLFTKVKKLIYRKDYHEIDEEISLILKPVNAFLET-LSWGSNYSGSHVQV 256

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
            +    +++ + +  +  +             +N+   +  +     +     + + +  
Sbjct: 257 TFNPQKDKTVISLTGKLGNHTFETGFRDDASLENLTHCIVFLLDFGLEPAVIQERVLLLK 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P      R           +ID++YN +   +  A++ L+Q       R+  +L D+ + 
Sbjct: 317 PV---SMRLELKEGINHSYIIDDAYNNDLQGLAMALNFLAQ--QEQRNRKTVILSDVLQT 371

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+     +  ++ +LS  +I  +   G  + +       +    Y +T   L  F   +L
Sbjct: 372 GQTPTELYKMVSRLLSEKSIDRLIGIGKQISSQASLFDIAEQEFYDDTDSFLKTFAFPTL 431

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
               +V+VK +    F ++++ + ++
Sbjct: 432 -ADTLVLVKGARPFSFEKIVHRIQQK 456


>gi|269302688|gb|ACZ32788.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 447

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +    D +  +            + G +IDS+ + P + FFA+ G   DGH F+ HA
Sbjct: 1   MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   VV+ D      S  + +  VDD   AL +         + T++ ITGSVGKT
Sbjct: 60  ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE     LSSI KT+A   SYN+ + VPL+L     D D  I E+G+S  G ++ L  
Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P IAVIT I   H  +F                 E           S  +LL   S 
Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S    K +            ++     +  ++ E  +        +     L
Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISRDSVVIQTPEENYCLPIAFSYKPAYTNL 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L+  ++   + +    P+            +    +I+++YNA P +M AA+  L
Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   G+ I +LG M E+G  S+  H  +AE  +      ++  G   + ++  L  
Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            S  V +  +   +   ++     GDV+++K S +     L+
Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444


>gi|291515605|emb|CBK64815.1| alanine racemase [Alistipes shahii WAL 8301]
          Length = 789

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 86/464 (18%), Positives = 164/464 (35%), Gaps = 51/464 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQEAFFAIKGPHYDGHDFILHA 60
           +    +   + G   G      V  +  DSRS+         F A+ G ++D H F+   
Sbjct: 3   YRLSQIAAVVGGRFSGT--DCEVQSVVTDSRSLTCELGSGPVFVAMCGANHDSHAFVAQM 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +G    +V   + A           V++ + AL  LA   R + + T++ ITGS GKT
Sbjct: 61  YARGVRAFMVERPLEALPECG---YVVVENAIAALQCLAAYHRAQFRGTVVGITGSNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE +   L +  K Y    SYN+ +GVPL++  +  D    + E G+S  GE+  L  
Sbjct: 118 VIKEWIAEELPAGMKCYRSPKSYNSQLGVPLSVLMIEGDEQLALIEAGISKPGEMARLER 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP + V T+I  AH  NF  +E+      ++         ++ +Y +    ++ ++  
Sbjct: 178 IIRPDVVVFTSIGDAHQENFLNLEQ--KCDEKMVLAHRAETIVYHSYYEPLGRMIASRFA 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +    S  +                             E +           ++   
Sbjct: 236 GRKLCDAASCPE---------------------------VPETLIGNEASRRNARIVEAF 268

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                  A   T    +++                     LI+++YN +  S+  A+  L
Sbjct: 269 CAAMGYPAPSFTEAPEVAMRLEV---------KDGINDSVLINDAYNLDLNSLALALDYL 319

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             ++         VL D+ + G      +  +A +++   +  +   G  +         
Sbjct: 320 HNVALSRRR--TLVLSDIAQSGLTDDELYGRVAGMVARAGVDTLVGIGPKLKRYAALF-- 375

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                +  + D     I    V G  V++K +    F +L + L
Sbjct: 376 GCDREFYASTDECIARIGRRAVAGRAVLLKGAREYRFEKLAHAL 419


>gi|15618808|ref|NP_225094.1| Muramoyl-DAP ligase [Chlamydophila pneumoniae CWL029]
 gi|33242262|ref|NP_877203.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
 gi|4377219|gb|AAD19037.1| Muramoyl-DAP Ligase [Chlamydophila pneumoniae CWL029]
 gi|33236773|gb|AAP98860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Chlamydophila pneumoniae TW-183]
          Length = 447

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 116/462 (25%), Positives = 187/462 (40%), Gaps = 19/462 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +    D +  +            + G +IDS+ + P + FFA+ G   DGH F+ HA
Sbjct: 1   MRAML-LEDWVSLMLSDVSCPKCDKKITGFAIDSQQVQPGDLFFALPGNATDGHQFLKHA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA   VV+ D      S  + +  VDD   AL +         + T++ ITGSVGKT
Sbjct: 60  ATAGAVAAVVSHDYQGD--SFGLELIRVDDTKSALQEAGSNQCNLFQGTLVGITGSVGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE     LSSI KT+A   SYN+ + VPL+L     D D  I E+G+S  G ++ L  
Sbjct: 118 TTKEFSKTILSSIYKTHASPKSYNSQLTVPLSLLMAEGDEDVMILEMGVSEPGNMQDLLR 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+P IAVIT I   H  +F                 E           S  +LL   S 
Sbjct: 178 IVQPEIAVITHINDQHAMHF------------PQGIQEILKEKSYILQKSKLQLLPKDSP 225

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S    K +            ++     +  ++ E  +        +     L
Sbjct: 226 YYLDLRSCSPTAEKFSFSFNDPLADFCYKAISGDSVVIQTPEENYCLPIAFSYKPAYTNL 285

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L+  ++   + +    P+            +    +I+++YNA P +M AA+  L
Sbjct: 286 LIAVALSWILEVPEEGVIRSLPELKLPPMRFEHSMRNGMQVINDAYNACPEAMIAALDAL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               P   G+ I +LG M E+G  S+  H  +AE  +      ++  G   + ++  L  
Sbjct: 346 PL--PSDGGKIILILGHMAELGRYSEEGHALVAEKAASRG-DMIFFIGEKWIPVQSVLKS 402

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            S  V +  +   +   ++     GDV+++K S +     L+
Sbjct: 403 YSCEVSFFSSAQDVKDILKQVARYGDVILLKGSRALALESLL 444


>gi|224531597|ref|ZP_03672229.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511062|gb|EEF81468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 463

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 111/444 (25%), Positives = 188/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    V + D  +        + 
Sbjct: 32  SLDSREIKNDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSRDHESECIEYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  ELVFLLTSNVIKLLQTLASCLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   KAK     +K +Y   ++ N      
Sbjct: 212 ELQVIAFEKSKIIGRNIEIFVLNEMNDYCVYLEKKAKIENPNVKIVYFDFENLNI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +  +      K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKIFYDFIYKGFEYSILLLGRHNIFNAIGCINLALFLGMGEKEIREG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K       Q  + ++++SYN N  S  A   ++  ++   +     +LG   E+
Sbjct: 322 IETAFQKGRAEIFTQNGYLILNDSYNGNMGSFMALKDIILDLNIQNKK--FIILGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GE     H DL +     N   ++L G   LA++D+        +Y    D    F   S
Sbjct: 380 GEFEYKTHKDLIQEAISMNFDKIFLIGEEFLAVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|297626714|ref|YP_003688477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922479|emb|CBL57052.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase)
           (D-alanyl-D-alanine-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 510

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 123/479 (25%), Positives = 189/479 (39%), Gaps = 26/479 (5%)

Query: 6   TFHDLLQAIQGH----SIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  DL + +  H     +       V   + ID+  + P   F  + G H DG D    A
Sbjct: 21  TTGDLAELVSAHGTPCRLQGSAAVPVGPQVVIDTHQVTPGALFVGLPGEHVDGADLAPQA 80

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS---KATIIAITGSV 117
              GA   +V  D+ A      +P   V+D    L+ LA               AITGS 
Sbjct: 81  AGAGAAAALVGHDVTA-----GLPRLIVEDAGRGLSALATGVVATELARGLITFAITGSS 135

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   L +   T +  G++NN IGVPL+   +     + + E+G    G++  
Sbjct: 136 GKTSTKDLLAQVLEATGPTVSPAGNHNNEIGVPLSACGVDATTRYLVSEMGSRGKGDVAT 195

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +V P I+ +  +  AHL  F   + IA AK EI E L   G   LN DD     +  
Sbjct: 196 LCRIVPPRISTVLNVGTAHLGEFGSQDAIAEAKGEIVEALPADGWAVLNADDPRVAAMAP 255

Query: 238 KSHALGIKTIY------SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +++A   +         S  +   +   +           + V   G +           
Sbjct: 256 RTNAHIARWTTTGAARASDAELFVSADHITTDALQRGSFQLRVTRGGATSTHPVRLRLIG 315

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             Q +  T      L A +D A  A S+         R      +G   LI++SYNANP 
Sbjct: 316 AHQVLNATAAATMALAAGLDPAAVAASLSTATTRSPLRMELHELRGGIALINDSYNANPD 375

Query: 352 SMKAAISVLSQISPHGEGRR-----IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           SM AA+  ++ +             IA+LG+M E+G  S   H  +A + +   I  V  
Sbjct: 376 SMAAALHAVAAMGAARHDEYPRARTIAILGEMGELGTQSARLHARVARLAADLGIDIVIA 435

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            G H   +  A         +   + +   +   LV GD+V+VK+S S     +   LL
Sbjct: 436 LGDHAGTMAQAAREGGAQARAARKEEVADSL--ELVPGDIVLVKASRSMALEDITAQLL 492


>gi|288574847|ref|ZP_06393204.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570588|gb|EFC92145.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 458

 Score =  180 bits (455), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/469 (30%), Positives = 213/469 (45%), Gaps = 23/469 (4%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           MNP + T+       +G   G    G  +G I +DSR I   + F A+ G + DGHDFIL
Sbjct: 3   MNPKIHTWSQYASLAEGMLKGD--DGEFSGLIRVDSRKIEEGDLFVALSGKNMDGHDFIL 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            A  +GA   +V++     I  L   I V  V D    L K+A   RL+    +IA+TGS
Sbjct: 61  DAFSRGAHCALVSSSWGEKIRDLPEGIRVIEVADPEQGLIKIAR-HRLKGLKNVIAVTGS 119

Query: 117 VGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           VGKT+T+EM+      S    Y    S+N  IG  LT+A MP D    I E+G +H GEI
Sbjct: 120 VGKTSTREMIFLALGGSSSGVYRARSSHNTRIGCALTVAEMPEDTSVLILEMGTNHPGEI 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             +  L     AVIT IAPAHL     +E +  AK EI E       IF   +      +
Sbjct: 180 SEMVDLYPVDTAVITEIAPAHLEGLGSLEGVLDAKLEILESPNLRKVIFNGDNPMLSSAV 239

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           K +S     +  ++ S G     D +L       E+  + + +  K     +        
Sbjct: 240 KERSFGKNWQALSVGSSGSYVLEDIRLE----WQERPVLSMIIGEKQGRSSYGIKAKLTG 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            +    LGI      ++  + +  S+               ++G   ++DESYNANP SM
Sbjct: 296 IHNASLLGIAWATAVELGISPEEASIRLSSIKPYHGRGVLKDRGGILVLDESYNANPKSM 355

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A + +++Q SP    +R+ +LG+M E+GE S S H ++ +         V+L G   ++
Sbjct: 356 EALLDLVAQ-SPFPREKRLLILGEMGELGEGSLSLHEEILKKALPLG--TVFLFGSMWIS 412

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           LK        V   E ++ L   ++S L  G  + +K S + G  RL+ 
Sbjct: 413 LK------PPVKVYEDIESLSSDLKSLLSKGYFIAIKGSRTNGLERLME 455


>gi|162455697|ref|YP_001618064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161166279|emb|CAN97584.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 490

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 115/475 (24%), Positives = 197/475 (41%), Gaps = 17/475 (3%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++  +L +A  G  +   P     G+S DSR+IAP  AF A+ G  +DGH F+  A Q
Sbjct: 10  APFSLDELARATGGRVLRSGPDA--RGVSTDSRTIAPGAAFVALAGESFDGHRFLDAAAQ 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--------TIIAIT 114
           +GA   +V+ ++    G  ++    V+D L AL  LA A R R +A         I+AI 
Sbjct: 68  RGAAAFIVSREVALPPGGGAV---LVNDGLTALGALARAHRERWRAGAHPGGPRAIVAIG 124

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--GVPLTLARMPVDVDFGIFELGMSHL 172
           GS GKTTT   +   L+++ +      + N +   G+P+TL  +     F + E+G +  
Sbjct: 125 GSAGKTTTTRTIAALLAAVGRGEVHATAGNLNNAIGLPMTLLGLEDRHRFAVVEIGTNQR 184

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           GE+  L  +  P +AV+T+I   H      +E++A+ + ++   L   G    N DD   
Sbjct: 185 GEVAALARIAGPDLAVLTSIGVEHTEGLGTLEDVAAEEGDLLAALPAEGVALGNGDDVKV 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                ++ A    T   FG+        R+       S    +       VV        
Sbjct: 245 VEQLERAGAARRITYG-FGERARIRIAGRRPVGVRGTSVRIERGGEALELVVPLLGEAGA 303

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                    +   +   + T   A +          R           +ID+SYNANP S
Sbjct: 304 LAAAAAVAVVEEAVGEPLSTERAARAAAGLAPPGDGRLSVRELPDGTVVIDDSYNANPLS 363

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHV 411
           M++++    +++     R + +LG+M E+G L+ + H  L E +     + +    G   
Sbjct: 364 MRSSLRTAVEVAEALGKRLVLLLGEMRELGALAAAEHDALGEQVGAARPAALVAVGGEAA 423

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + A    +   ++   D      Q  +  GD+V+VK S      R++  L+ 
Sbjct: 424 RIARAAEAAGVRAWFAGDADAAAARAQEIVERGDLVLVKGSRGIRMERIVEALVA 478


>gi|260655417|ref|ZP_05860905.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629865|gb|EEX48059.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 468

 Score =  180 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 122/469 (26%), Positives = 194/469 (41%), Gaps = 22/469 (4%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            + +  DLL    G  +    +       +DSR++ P + F A +G   DGH +I  A+ 
Sbjct: 9   AVLSLKDLLP--NGLDVTGPDRPLPLTFRVDSRAVEPGDGFAAFQGESTDGHLYIESALA 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           +GA +V+     V+       P            AL +LA A  +R      + A+TGSV
Sbjct: 67  RGASVVLAERGRVSEKLPAQWPQVTFIFGHRSETALAELARAYLVRLPDLKHVAAVTGSV 126

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT+  L   +S+ ++T+A  G+YN  IG  + +   P DV   + E+G +H GEI  
Sbjct: 127 GKTTTRSFLARIMSASQRTHAASGNYNTLIGCSVAVLSAPFDVQCLVLEMGANHPGEIAQ 186

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +     P  A IT +APAHL  F  ++ +   KA IF G  +     LN D+     L +
Sbjct: 187 MVSFFPPTAAAITEVAPAHLEGFGSVQGVLREKAGIFGG-GRLKDAVLNADNPLLAELAS 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +            S   D      +   ++ +        S + V   +       + 
Sbjct: 246 QINTPVTTFGRDGSLSFEDD------RLEWDEGFKVSARLCYSGDRVPVSVRLSGKHGLY 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                +++         +A+      E    R      Q    LIDESYNA+P SM AAI
Sbjct: 300 PLCCALALAVRMGVPFRQAVREAVSFESLPGRGEVVRLQNGAFLIDESYNASPKSMTAAI 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L ++     GR+ A+LG M E+G  + + H  + EV            G    +   A
Sbjct: 360 QSLGEV--QIRGRKFALLGSMGELGAGASAAHQQVMEVARGQGFDWWGAYGSDWQSGAKA 417

Query: 418 LPRSIHVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLL 465
                        + +   +   +L  GDV++VK S++CG  RL+  L 
Sbjct: 418 TDN-----LLTDWEEVRRAVAGLNLRSGDVLLVKGSHACGLERLVKELK 461


>gi|187918178|ref|YP_001883741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
 gi|119861026|gb|AAX16821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia hermsii DAH]
          Length = 464

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 114/471 (24%), Positives = 202/471 (42%), Gaps = 25/471 (5%)

Query: 7   FHDLLQAIQ-GHSIG--IVPQGFVNGISIDSRSIAPQ----EAFFAIKGPHYDGHDFILH 59
             D+L ++     +G     Q  V+  S+DSR I  +      +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLGDVKFVGYLSSMQRVVSFYSLDSREINDENSGASLYFAYKGDRVDGFSFVEY 65

Query: 60  AVQKGAGLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D             S+      +V+  L  LA     R+    IAIT
Sbjct: 66  LIDIGVKCFVCSKDYEHLCVEYLNKDESLVFLLTSNVVMCLQNLAAHFIKRTNFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTEGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  L+ ++ P I ++T I+ AH+  F  +E IAS K+EI    + T  + LN    +   
Sbjct: 186 MNLLSEILEPEIVIVTNISYAHMQAFEDLEMIASEKSEIIT--KSTQMVILNESCPYHSR 243

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  + ++  +    +        Q++ +   +++   +   +G    ++    G H   
Sbjct: 244 LREIAKSISPEINIFY--FDFNSLQIKSFAFLNDKFSYDFTYKGFDYSILLP--GKHNIF 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +  +L    +     L          K     L    + ++++SYN N  S  
Sbjct: 300 NAISCINLALLLGMSENEIRNGLLN----ADFQKGRAELLRVKDYLVLNDSYNGNLGSFM 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A       +    +G++  +LG   E+G+ +   H      + L N   V+L G     +
Sbjct: 356 ALKE--MILDFEIKGKKFIILGSFKELGKFAYEAHKTAMREVILMNFDKVFLIGEEFQEV 413

Query: 415 KDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           K     S  ++ Y    +       ++L  G  + +K S S    R+++ L
Sbjct: 414 KRRENLSLNNLCYFSNFEDFIDCFVNNLESGCFIAIKGSRSNRLERVLDYL 464


>gi|225023745|ref|ZP_03712937.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
 gi|224943627|gb|EEG24836.1| hypothetical protein EIKCOROL_00609 [Eikenella corrodens ATCC
           23834]
          Length = 464

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 128/474 (27%), Positives = 203/474 (42%), Gaps = 28/474 (5%)

Query: 3   PLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSI----APQ-EAFFAIKGPHYDGHDF 56
           P+ T  DL    +  +         +  +  DSR          + F A+ G  +D HDF
Sbjct: 4   PMPTL-DLAFVCRALNLPAPQHNLPIRRVITDSRQAAAADERGTDLFVALVGDKHDAHDF 62

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +   + +GA  +V   D +A  GSL      V D L AL  LA A R      ++ ITGS
Sbjct: 63  VPAVLAQGALALVSRQDCIALSGSLP-----VADTLAALQTLAAAWREAVNPMVLGITGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            GKTT KEML   L          A  G++NNHIG+PLTL  +     + + E+GM+H G
Sbjct: 118 SGKTTVKEMLAAILRRQFGEAAVLATAGNFNNHIGLPLTLLALRPQQRYAVIEMGMNHFG 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN-FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           E+  LT +  P  A++     AH+   F G+ +IA AK+EI+ GL ++GT  +  +D + 
Sbjct: 178 ELDALTRIACPDAALVNNALRAHIGCGFDGVGDIARAKSEIYRGLPESGTALIPAEDEYA 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E+ +A   AL ++ I         +      +        ++  Q +   V     G H 
Sbjct: 238 EVFRAACRALNLRQIEF--GVDKGEVHAENVRLLPLGCRFDLVWQDQRAAVELPVPGKHN 295

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N +    +       +  +  AL+          R +        T+ID++YNANP S
Sbjct: 296 VANAVAAAALALQAGVGLSESATALA---GFANIKGRLQRKAGLRGSTIIDDTYNANPDS 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSGFHV 411
           MKAA+ VL ++       RI V+GDM E+G+  + + H ++        I   +  G   
Sbjct: 353 MKAALDVLVELPA----PRIFVMGDMGELGDDEAPALHAEIGRYARDKGIEAAYFVGDFS 408

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           +   +A    +   +    D L   +   L +   V+VK S       ++  L 
Sbjct: 409 VEAAEAF--GVAGLWFAAKDPLQQVLVHELPEQASVLVKGSRFMQMEEVVAALQ 460


>gi|219685635|ref|ZP_03540450.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
 gi|219672823|gb|EED29847.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia garinii Far04]
          Length = 463

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/444 (24%), Positives = 184/444 (41%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    +   +  +        + 
Sbjct: 32  SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +        D   +   +AK     +K +Y   +S N      
Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        + L    
Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLVE-- 323

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                 K     L +  + ++++SYN N  S  A  +    +    +G++  VLG   E+
Sbjct: 324 --TAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKN--MILDLDIQGKKFMVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440
           GE +   H DL +     N   ++L G   L +          ++Y    D    F   S
Sbjct: 380 GEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|225552447|ref|ZP_03773387.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
 gi|225371445|gb|EEH00875.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia sp. SV1]
          Length = 463

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 108/444 (24%), Positives = 190/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    V + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFVCSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  ELVFLLTSNVIKLLQTLASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQTIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|121535923|ref|ZP_01667719.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
 gi|121305494|gb|EAX46440.1| Mur ligase, middle domain protein [Thermosinus carboxydivorans
           Nor1]
          Length = 259

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 3/237 (1%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +T  ++  A++G  IG        GIS D+R++   + F A+ G  +DGH+F+  AV +G
Sbjct: 4   FTVSEVCLAVKGSLIGGSAGAIFTGISTDTRTLKAGDLFIALSGERFDGHEFLHQAVAQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+++      +    I V   DD   AL  LA   RLR    +IA+TGS GKTTTK+
Sbjct: 64  AAGVLISR--RDIVIPSGIAVVLTDDTRKALQNLACFHRLRFDIPVIAVTGSNGKTTTKD 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M    L+S  K      +YNN IG+PLTL  +  D    + E+GM   GEIR L  +  P
Sbjct: 122 MTAAVLASRFKVLKTEANYNNEIGLPLTLLNLTADHQVAVVEMGMRSKGEIRELAEVALP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            + V+T +   H+     +E IASAKAE+ E +++   I  N D+ +   +++K+ A
Sbjct: 182 TVGVVTNVGETHIELLGSLENIASAKAELVENIQEGLVIL-NADNPYVYAMRSKTKA 237


>gi|322436309|ref|YP_004218521.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
 gi|321164036|gb|ADW69741.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Acidobacterium sp. MP5ACTX9]
          Length = 456

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 114/467 (24%), Positives = 187/467 (40%), Gaps = 21/467 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +   I            V G SIDSR+I   E FFA+ G   DGHD++  A+  G
Sbjct: 3   LTLGQVADWIHAEGDFTTSSEAV-GYSIDSRTIGAGELFFAVTGDRVDGHDYVEAALANG 61

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDD----VLGALNKLAVAARLRSKATIIAITGSV 117
           A   VV+   +AS     +    +  V +    VL A+  LA+  R      +I +TGS 
Sbjct: 62  AVAAVVSNRWLASDEPREVDPCKLLWVPEGEECVLRAMQLLALRVRQSWGGRVIGVTGSA 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   LSS        G+ NNH GVPL L R+  + +  + E+GM+H GEI+ 
Sbjct: 122 GKTTTKEMVATVLSSQFSVLKSAGNLNNHFGVPLQLLRLEAEHEVAVIEMGMNHSGEIKR 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  +  P   V++ +A  HL  F       +A          +  + +   D  +     
Sbjct: 182 LAEIAEPQWGVVSNVAAVHLEFFPAGIAGIAAAKRELIEALPSDGLAILNGDDEWV---- 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +   +G+ ++      +         +   +     V   G + EV    +G H   N L
Sbjct: 238 RGFGVGVDSVLYGLGDEAQVRATNVVEAGLDGVSFTVHAGGDTAEVHLALLGKHNVSNAL 297

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +       +     AL+     + RG             L+++SYN+NP ++ A +
Sbjct: 298 AAIAVGWKSGMTLTACAAALAEMRATDKRGAVIEWRG----AKLLNDSYNSNPKALDAMV 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L          RI V G+M E+G    + H      ++   +  +         L   
Sbjct: 354 DALISTPATR---RIVVAGEMLELGPEGPALHKACGRRMAEQGVDLIVGVRGLAADLVSG 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                   + ET +    ++ +++  GDVV++K+S      R +  L
Sbjct: 411 A--GEKAVFVETPEAAGNWLTANVKAGDVVLLKASRGVRLERALEKL 455


>gi|219684602|ref|ZP_03539545.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
 gi|219671964|gb|EED29018.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia garinii
           PBr]
          Length = 463

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 111/445 (24%), Positives = 187/445 (42%), Gaps = 24/445 (5%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    +   +  +        + 
Sbjct: 32  SLDSREINDDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYIGEMDLLSQILKPEIVIITNIGYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +        D   +   +AK     +K +Y   +S N      
Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVANEMNDYCVYLEKRAKIANPNVKIVYFDFESLNI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +    +    +G++  VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMDSFMALKN--MILDLDIQGKKFMVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQS 439
           GE S   H DL +     N   ++L G   L ++  + L     ++Y    D    F   
Sbjct: 380 GEFSYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSEFDKFIDFFLK 438

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
           SL     +V+K S      R++N +
Sbjct: 439 SLEPSVFIVIKGSRFNRLERILNYI 463


>gi|291302802|ref|YP_003514080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572022|gb|ADD44987.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 450

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 126/468 (26%), Positives = 194/468 (41%), Gaps = 24/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M PL +  ++   + G   G      V     +D R   P   F A  G   DGHDF   
Sbjct: 4   MIPL-SLGEIAVVVDGTVEGDGA-VMVTAPAVLDGRQAEPGGLFVAFAGDRVDGHDFAEQ 61

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSV 117
           A + GA  V+ +     S          V D           V  RLR   T+  +TGS 
Sbjct: 62  AGEAGAVAVLGSRPTSLST-------VVVKDVQAAVQALAAYVVGRLRDGLTVAGLTGSQ 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT+TK++L   +SS   T A + S+NN IGVP+T+ R      F + E+G   +G+I  
Sbjct: 115 GKTSTKDLLATVVSSTAPTIAAVDSFNNEIGVPVTMLRADAASRFLVLEMGARRVGDIAD 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT LV P +AV+  +  +HLS F   + IA AK E+  GL   GT  LN DD     +++
Sbjct: 175 LTGLVAPDVAVVLNVGQSHLSYFGSRQAIAKAKGELVRGLAPGGTAVLNADDPVVVAMRS 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            ++   +    +FG +++AD ++       ++          +       +    A    
Sbjct: 235 LTNGPVL----TFGYAEHADVRVVDLTL--DRLSRPSFTLRTADGSAFVELPLVGAHQAH 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                V+   A       A S          R          TL+++S+N+NP S +AA+
Sbjct: 289 NASAAVAAGLAAGVPLDVAASALATASLSKWRMELRELDSGATLLNDSFNSNPDSTRAAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                ++    GRRIAVLG+M E+G+  +S H    E  +      V   G     + D 
Sbjct: 349 DA---LAGIEGGRRIAVLGEMLELGDDHESEHRAAGEYAAARADVVV-AVGGIASLVADG 404

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              S         D    +++  +  GDVV+VK+S       +   L+
Sbjct: 405 AGDS--AVALPDNDAAIDWLRGHITAGDVVLVKASRGVFLDEVAAALV 450


>gi|260171780|ref|ZP_05758192.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Bacteroides sp. D2]
 gi|315920092|ref|ZP_07916332.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693967|gb|EFS30802.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 846

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 191/484 (39%), Gaps = 34/484 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRMGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102
               V+  +    I +  +                          V + L AL KLA A 
Sbjct: 64  VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +    L +   A  + T      S+    +     +  ++    V        
Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEM 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I +    ++   L  ++     +  A +        E    R      +    LI
Sbjct: 297 DNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLLL 465
             L 
Sbjct: 476 EELE 479


>gi|262408369|ref|ZP_06084916.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645830|ref|ZP_06723513.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294808184|ref|ZP_06766950.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
 gi|262353921|gb|EEZ03014.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638843|gb|EFF57178.1| alanine racemase [Bacteroides ovatus SD CC 2a]
 gi|294444593|gb|EFG13294.1| alanine racemase [Bacteroides xylanisolvens SD CC 1b]
          Length = 846

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/484 (21%), Positives = 191/484 (39%), Gaps = 34/484 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKG 64
              + ++I    +G   +  ++ +  DSRS++   +  FFA+      G  +I     +G
Sbjct: 5   IESIAKSIGARRMGK-HKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRG 63

Query: 65  AGLVVVNTDMVASIGSLSIP----------------------VFGVDDVLGALNKLAVAA 102
               V+  +    I +  +                          V + L AL KLA A 
Sbjct: 64  VRNFVITEEDFKLIENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAH 123

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R + K  +I ITGS GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + 
Sbjct: 124 RDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAEL 183

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++E    K  +F+  +    
Sbjct: 184 GIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-- 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +    L +   A  + T      S+    +     +  ++    V        
Sbjct: 242 -----IYNGDNELISNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEM 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                I +    ++   L  ++     +  A +        E    R      +    LI
Sbjct: 297 DNTFCIPFIDDASIENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLI 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++SYN++ AS+  A+  L + S     +R  +L D+ E G+ + + +  +A+++    I+
Sbjct: 357 NDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGIN 416

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLI 461
            +   G  + +        +  ++    + L    I  SL   +V++VK S    F  + 
Sbjct: 417 KLIGVGQEISSCSARFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVS 475

Query: 462 NLLL 465
             L 
Sbjct: 476 EELE 479


>gi|124265651|ref|YP_001019655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
 gi|124258426|gb|ABM93420.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Methylibium petroleiphilum PM1]
          Length = 470

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 110/470 (23%), Positives = 184/470 (39%), Gaps = 23/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +         + G ++   P   +  +  D+R++   + F A+KG  +D HDF+  A
Sbjct: 1   MSVMMDLRLAHALLPGSTLVGDPATPLLRVHSDTRTLRAGDLFVALKGERFDAHDFLPQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                    V       +    +    V D   AL  L    R R    +IA+TGS GKT
Sbjct: 61  R----AAGAVAAIAEHGLAEAGLAGLHVADSRAALGTLGANWRARMSLPLIAVTGSNGKT 116

Query: 121 TTKEMLTIALSSIKKT--YACIGSYNNHIGVPLTLARMPVD----VDFGIFELGMSHLGE 174
           T  +M+   L +      +A  G++NN IGVPLTL R+  D        + ELGM+H+GE
Sbjct: 117 TVTQMIASILRAWVGDAAFATEGNFNNDIGVPLTLLRLRQDADTWHRAAVVELGMNHVGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  +  P +A++      H    + +E +A     +     +             + 
Sbjct: 177 IAQLARMAAPTVALVNNAQREHQEFMASVEAVARENGAVI----EVLGANGTAVFPSDDA 232

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A   AL           +     + +     +     +     +  +     G+H  +
Sbjct: 233 HAAVWQALAGTRPTLTFSLEGPSDLVAEAVWSGDHWAAVLHTPAGATAIRLRVAGWHNVK 292

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L            ++   + L  F P +GR +           TL+D+SYNANP S++
Sbjct: 293 NALAATACALAAGCPLEAVARGLEAFEPVKGRSQVKALQRGGRAVTLVDDSYNANPDSVR 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+ +     G R  VLGDM E+G+   +FH ++    +   I  +W +G    A 
Sbjct: 353 AAIDVLATLP----GPRWLVLGDMGEVGDQGPAFHAEVGRYAAACGIDALWTAGAASAAA 408

Query: 415 KDALPRSIHVHYSETMDGLFLFI--QSSLVDGDV-VVVKSSNSCGFYRLI 461
             A   +   H   ++  L   +   +        +VVK S      ++I
Sbjct: 409 AAAFGPAARAH--ASVAELIAALGPDTHAAPEAASIVVKGSRFMKMEQVI 456


>gi|46199022|ref|YP_004689.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
 gi|46196646|gb|AAS81062.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine-D-alanyl-D-
           alanine ligase [Thermus thermophilus HB27]
          Length = 438

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 175/459 (38%), Gaps = 44/459 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   + +A+ G        G V  +   S +  P   F A+ G    G  FI  A+ +G
Sbjct: 17  LTPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTTTKE
Sbjct: 75  ASLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKE 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L       A  G+ N    +      +       + ELG+   GE+  L  L +P
Sbjct: 127 ALAQGL----GLPAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+AV+T +   HL  F  +E+    +A +         +           L+      G 
Sbjct: 183 HLAVLTALGEEHLEAFGTLEKAVQEEAHLL---RAPTALVGEQAAPLVLGLREDLLVYGF 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 G+      +  +++                     H    +             
Sbjct: 240 AEGTFRGRDLELGLRESRFRYGG-----------------LHVRVPYPGLGPAYGALAAL 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +  +++ ++    +             G    ++++YNANP S+KA +  L+   
Sbjct: 283 AAAEVLGLSLEEVAERLSRLTLPPGRMETREVGGVVFVNDAYNANPLSVKAGLRWLAAQP 342

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+ AVLG+M E+G  S   H+++AE  +   +S ++L G H          +   
Sbjct: 343 ----GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARH-----QAAFSG 392

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              E+++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 393 EAVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431


>gi|55981048|ref|YP_144345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
 gi|55772461|dbj|BAD70902.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase [Thermus
           thermophilus HB8]
          Length = 438

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 175/459 (38%), Gaps = 44/459 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   + +A+ G        G V  +   S +  P   F A+ G    G  FI  A+ +G
Sbjct: 17  LTPEWVARAVGGRLHPGG--GPVRDLVWHSGAATPGSLFAALPGRTTHGRHFIPEALARG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +    A+          V+D   AL +L  A R      ++A+ GS GKTTTKE
Sbjct: 75  ASLVLADQAGPAT--------LEVEDPWQALLRLGEALRRLFPGPVLAVGGSSGKTTTKE 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            L   L       A  G+ N    +      +       + ELG+   GE+  L  L +P
Sbjct: 127 ALAQGL----GLPAPPGNLNTAPPLVRFFWHLDPQSPGAVVELGVDRQGEMAELFALAKP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H+AV+T +   HL  F  +E+    +A +         +           L+      G 
Sbjct: 183 HLAVLTALGEEHLEAFGTLEKAVQEEAHLL---RAPTALVGEQAAPLVLGLREDLLVYGF 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 G+      +  +++                     H    +             
Sbjct: 240 AEGTFRGRDLELGLRESRFRYGG-----------------LHVRVPYPGLGPAYGALAAL 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +  +++ ++    +             G    ++++YNANP S+KA +  L+   
Sbjct: 283 AAAEVLGLSLEEVAERLARLTLPPGRMETREVGGVVFVNDAYNANPLSVKAGLRWLAAQP 342

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               GR+ AVLG+M E+G  S   H+++AE  +   +S ++L G H          +   
Sbjct: 343 ----GRKWAVLGEMRELGRESLRLHLEVAEEAARLGLSPLYL-GPHARH-----QAAFSG 392

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              E+++    ++++ +  GD+V +K+S + G  R++ L
Sbjct: 393 EAVESLEEALAWLKARVAPGDLVYLKASRAVGLERIVEL 431


>gi|239617757|ref|YP_002941079.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506588|gb|ACR80075.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 446

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 115/437 (26%), Positives = 189/437 (43%), Gaps = 27/437 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             I IDSR +   + F A+KG   DG+DFI  A+++GA   V N        S +  VF 
Sbjct: 19  RKIRIDSRVVKIGDVFIALKGTRVDGNDFIDDALKRGAIFGVSNR------SSDNPAVFF 72

Query: 88  VDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             D    L + A      SK    IAITGS GKTTTKE+L   LS   K +   G+ N  
Sbjct: 73  HPDPKKLLIEAAAFILKHSKIKHKIAITGSNGKTTTKEILASILSDYGKVFKTPGNLNTE 132

Query: 147 IGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           IG+P+ +        + D+ IFE G S  G+I FLT LV P IAV+  +  AH  NF+  
Sbjct: 133 IGIPIAILENRSQLAECDYAIFEFGTSKKGDISFLTDLVNPDIAVLLNVGTAHRGNFNDE 192

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E+   K  IFE L+K  T   N DD     + ++     +      G     D ++ K+
Sbjct: 193 TELLQEKCSIFETLQKDSTAITNGDDKRIRSMISELSCKKLFFGQRNG-----DLKIMKF 247

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 +++  +  G+       GI             + ++     +  +    +  P 
Sbjct: 248 DYSKNNTFVAFKAFGEMKMAKLKGIWNSGQLLDFGAAYLTALSLKIEEPLLNINRIILPF 307

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R        N     LI++ YN++  S+++AI  ++++         AV+G + E G+
Sbjct: 308 NNRF----SVENIAGIILINDCYNSSLESVESAIKSIAKLKKER---TFAVVGSILEQGK 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLV 442
            S+  H +L  +L+     H+ L         +A+  + ++ + S   + +  +++ +  
Sbjct: 361 YSKKTHEELGRLLNF--FDHIVLYTKDTQ--VEAVQNTANIDFKSSNPEEVAEWLKKNCR 416

Query: 443 DGDVVVVKSSNSCGFYR 459
            GD+V  K+S       
Sbjct: 417 YGDLVYFKASRGVALEE 433


>gi|149198201|ref|ZP_01875248.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
 gi|149138803|gb|EDM27209.1| UDP-N-acetylmuramyl pentapeptide synthase [Lentisphaera araneosa
           HTCC2155]
          Length = 455

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 113/468 (24%), Positives = 204/468 (43%), Gaps = 18/468 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  F++L QA+ G ++              D+R       FFA +G ++DGH+++  AV+
Sbjct: 1   MLDFNELCQALNGEALVRDANYDDYRAFESDTRKDLTDTVFFAFEGDNFDGHNYLDLAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTT 121
           KGA ++VV  ++       S+ +  VDD + A  +L      + K A    ITGS GKT+
Sbjct: 61  KGARVLVVAKEVELLTLD-SVAMIKVDDTVKAWQRLGHFLLQKQKSARRFGITGSSGKTS 119

Query: 122 TKEMLTIALSSIKKTYA--CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T  +L+  L  I+        G+ NNHIGV   + R+  D  F   E+G +H GEI  L 
Sbjct: 120 TNAILSQLLEFIRPKQVLSTHGNTNNHIGVTQNIVRLKGDESFFSLEVGTNHPGEIADLA 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +V PH A++T++  +H+ NFSGI+ I   K +IF  + + G   +       + ++   
Sbjct: 180 KIVVPHAAILTSVGASHIGNFSGIDAIFDEKIDIFRYMARDGVAIVPAA--LVKRIEDAL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLM 298
                 T  SFGK K AD +L  ++   E+S   V+L+      +     G H   N+  
Sbjct: 238 PERKDITYISFGKEKYADVRLGSYELGLEKSTFLVKLKSGESLSLESILSGEHQLLNICA 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + ++     +    I  L                      T + + YNANP S  A + 
Sbjct: 298 CVALLENYQEEYSFTISDLKSALSSVALPGMRMKTEKVEDQTFVLDCYNANPQSTSAFLD 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +  +   G    + VLGDM E+G++++ +H ++ +         +   G     +    
Sbjct: 358 WVKSVYKSG----VLVLGDMLELGDMAKKYHQEILDKAKAMQGFDLVTVGECFKEVNQEG 413

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + ++++    F++ ++   + +  K S      ++ + L +
Sbjct: 414 KA-----FLDSLE-AGAFLKENIKVNETLFFKGSRGIQLEKIYHKLRD 455


>gi|281356125|ref|ZP_06242618.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
 gi|281317494|gb|EFB01515.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Victivallis
           vadensis ATCC BAA-548]
          Length = 459

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 115/465 (24%), Positives = 190/465 (40%), Gaps = 24/465 (5%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP +T  +L +A +G             +  D+R       F A+ G  +D HD++  AV
Sbjct: 3   NPTFTGKELAEATRGSWRDGRLPAEAVAVYTDTRVAGEGRLFLALPGEKFDAHDYLAQAV 62

Query: 62  QKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGK 119
             GAG + +  D    +     +PV  VDD L A  K+A   R R     ++A+TGSVGK
Sbjct: 63  AAGAGGLCIRRDRAEKLPEPCPVPVLEVDDTLAAYQKIANFHRRRFPELKLVAVTGSVGK 122

Query: 120 TTTKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           T+ KE++   L++           G+ NN IGVP  L R+     + + E+G +H GEI 
Sbjct: 123 TSVKEIVRAILTAASSPEAVLYTEGNTNNQIGVPQNLLRLNSRHRYAVIEMGTNHHGEIE 182

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L+ +  P  +++ +IAP HL     +E +A  K+ IF GL ++G   +  D    E+L 
Sbjct: 183 PLSRMAEPLASLVNSIAPCHLEFLGSLEGVAREKSHIFCGLPESGAAVIPADGPAVEVL- 241

Query: 237 AKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
               A     ++ FG+     D   R      E S  E+  +      +   +       
Sbjct: 242 --ETAAESYRVFRFGEDVSRCDAAARYLGGTLEGSRFELSFRTGERFTLEWALTGRHQAR 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                  +++        I A +V                    T ++++YNANP SM+A
Sbjct: 300 NAAAAAALAVAIGIPPETIAAGAVHA---RLPGMRSKVTRLDGVTYVNDAYNANPGSMRA 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLSGFHVLA 413
           A++ L++ +     R + VLG+M E+G    + H  L E        +  +   G     
Sbjct: 357 ALANLAEFA--DPARLVLVLGEMRELGGSEAAEHRALVENALQTFPGV-RLLTVG----- 408

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              A          +  + +   +   + DGD+V  K S      
Sbjct: 409 --RAFGECPGALRFDRSEEVGETLAKLVRDGDLVFAKGSRGIAVE 451


>gi|221217708|ref|ZP_03589176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223889004|ref|ZP_03623595.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224533118|ref|ZP_03673718.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224533787|ref|ZP_03674375.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225550109|ref|ZP_03771069.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|221192385|gb|EEE18604.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|223885820|gb|EEF56919.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|224511845|gb|EEF82246.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi WI91-23]
 gi|224513080|gb|EEF83443.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|225369221|gb|EEG98674.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 118a]
 gi|312149582|gb|ADQ29653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi N40]
          Length = 463

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 189/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|203284225|ref|YP_002221965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
 gi|201083668|gb|ACH93259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           duttonii Ly]
          Length = 465

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 196/472 (41%), Gaps = 26/472 (5%)

Query: 7   FHDLLQAI-QGHSIGIVPQGF--VNGISIDSRSIA-PQE---AFFAIKGPHYDGHDFILH 59
             D+L ++     IG V      V+  S+DSR I         +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65

Query: 60  AVQKGAGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D     +        +      +V+  L  LA     +++   IAIT
Sbjct: 66  LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  +  ++ P I ++T ++ AH+  F  ++ +A  K++I    + T  + LN        
Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQHVY 243

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  + ++       + +  N   +   +               K  +      G H   
Sbjct: 244 LEEIAKSVNPNINIFYFEFHNLQIRSFSFV----NDKFSYDFTYKGCDYSILLPGKHNIC 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +   L    +     L          K     +    + ++++SYN N +S  
Sbjct: 300 NAISCINLALFLGLSENEIRNGLLH----ADFQKGRAELVRIKDYLVLNDSYNGNLSSFM 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A       +    + R+I VLG   E+G+ +   H    E + L N   V+L G    A+
Sbjct: 356 ALKE--MILDLEIKDRKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKVFLIGEEFQAV 413

Query: 415 K--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           K  D+L  +  + Y    +       ++L  G  + +K S +    R+++ L
Sbjct: 414 KRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|216264224|ref|ZP_03436216.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215980697|gb|EEC21504.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 463

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|51598565|ref|YP_072753.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
 gi|51573136|gb|AAU07161.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase [Borrelia
           garinii PBi]
          Length = 463

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 184/444 (41%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA +G   DG  F+ + +  G    +   +  +        + 
Sbjct: 32  SLDSREIKDDNINVSLYFAYRGNKVDGFSFVKYLIDLGVKCFICAREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      DV+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSDVIKLLQTLASCLIERTNFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++  FE+G S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAGFEVGGSYIGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +        D   +   +AK     +K +Y   +S N      
Sbjct: 212 ELQSIAFEKSKIIGKNIEIFVTNEMNDYCIYLEKRAKIANPNVKIVYFDFESLNI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +    +    +G++  VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKN--MILDLDIQGKKFMVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSS 440
           GE +   H DL +     N   ++L G   L +          ++Y    D    F  +S
Sbjct: 380 GEFAYKTHKDLIKEAVSMNFDKIFLIGEEFLDVRYSENLVEKRLYYFSEFDKFIDFFLNS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|313206649|ref|YP_004045826.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|312445965|gb|ADQ82320.1| alanine racemase [Riemerella anatipestifer DSM 15868]
 gi|315022146|gb|EFT35175.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Riemerella anatipestifer RA-YM]
          Length = 814

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/464 (19%), Positives = 175/464 (37%), Gaps = 27/464 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFIL 58
           MN  +T   + +      IG      +   + DSR I       F AIK    +G  +I 
Sbjct: 1   MN--YTARQIAEITGAKLIG-AGDKIIKHFAFDSRIIYSPKNTGFVAIKTKKNNGEKYIA 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+KG  L+V        + +  +    VDD +  L KLA           I ITGS G
Sbjct: 58  SAVEKGIELIVSEHKT---LDNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE L   LS   +      S+N+ IG+PL+L  +  +   GIFE+G+S   E+  L
Sbjct: 115 KTIVKEWLYQCLSEDIRCVKSPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTL 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P I V+T I  AH+SNF   + +   K  +            +   +   +L + 
Sbjct: 175 ETIFSPKIGVLTHIGSAHISNFKSEKHLVDEKISL-------FKDSESIIFNGDNILVSN 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  +        N D  +       ++            +             +  
Sbjct: 228 KINTLYSSKNLISYGFNKDNNIHISSNWKDRQQPITV--QCFDKSFSFPAQQRDEATLSN 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I++++     +  K +   +  +    R           +I++S+N +  S+K    
Sbjct: 286 VLAIIAVMHLLEFSTEKMIEKINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKI--- 342

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               I  + + ++  ++ D  E    + + + ++A +++  N + V+L G  +   +  L
Sbjct: 343 AFEFIKSYQKPKKSLIITDFTEK-SDADNLYQEVASLINEQNFNKVFLIGEEISQYQHLL 401

Query: 419 PRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVKSSNSCGFYRL 460
             +       T + LF     +    + +++++K +      ++
Sbjct: 402 --NTESFSFNTTNDLFSNQEFKDL--ENELILLKGARKFEIEQV 441


>gi|218249487|ref|YP_002374827.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|218164675|gb|ACK74736.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Borrelia
           burgdorferi ZS7]
          Length = 463

 Score =  176 bits (445), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGAFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|291278995|ref|YP_003495830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753697|dbj|BAI80074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Deferribacter desulfuricans SSM1]
          Length = 453

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 109/443 (24%), Positives = 194/443 (43%), Gaps = 18/443 (4%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              N + I+S+ +   + F A+KG + DG+ F   A ++GA L V +     +  S++  
Sbjct: 22  VEYNNVVINSKEVKKGDIFLALKGTNVDGNSFFKEAYERGAILTVFDNPYFYNKASINK- 80

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V+D   A+    +     + A  +AITGSVGKTTTK++L    S   ++Y    +YN
Sbjct: 81  -VLVEDSFNAIKSFGIWKLKNNFAKRVAITGSVGKTTTKKLLYEIFSKQYQSYMSYKNYN 139

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N +G+ ++ A +P +VD+  FE+G +  GEI+  T  +RP +AVIT IA +H+  F  + 
Sbjct: 140 NELGIAISCANIPDEVDYAFFEIGTNSKGEIKKYTDYIRPEVAVITKIASSHIGRFGDLN 199

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EIA+ K  I E            D  +      K   +  K I++ G S+ ADF++   K
Sbjct: 200 EIAAEKFSIAETDSVKELWLNENDTVYL-----KDEIVKNKKIFTVGFSEKADFRIIDIK 254

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                    V+      +   +   YH   N  M  G+      + D   +A+  F P  
Sbjct: 255 SLDGGYEFYVKFNRDKFKFQINHFYYHFILNASMAAGVALREGIEYDYIYQAIKEFLP-- 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              ++     N     +ID++YNA+  S+ AA+  L +     + +   +          
Sbjct: 313 --EEKRGVVYNYENIAIIDDTYNASIDSITAALKSLDKYKCFNKDKIAIIGEIAEIE-GF 369

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
               +  L E     +   V   G +     D      ++ +      L+ ++ +++  G
Sbjct: 370 EDEIYEKLIEFAKKLSGVTVIFCGDYF----DKYEDFENIKFFNNKQKLYKYL-NNINSG 424

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
              +VK+S S  F  +++ L+ +
Sbjct: 425 CF-LVKASRSKKFEEIVDYLITK 446


>gi|203287763|ref|YP_002222778.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
 gi|201084983|gb|ACH94557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase [Borrelia
           recurrentis A1]
          Length = 465

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/472 (22%), Positives = 197/472 (41%), Gaps = 26/472 (5%)

Query: 7   FHDLLQAI-QGHSIGIVPQGF--VNGISIDSRSIA-PQE---AFFAIKGPHYDGHDFILH 59
             D+L ++     IG V      V+  S+DSR I         +FA KG   DG  F+ +
Sbjct: 6   IKDILDSLKDVKFIGDVSNVQKIVSFYSLDSREINVENSEVSLYFAYKGDRVDGFFFVKY 65

Query: 60  AVQKGAGLVVVNTD-----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +  G    V + D     +        +      +V+  L  LA     +++   IAIT
Sbjct: 66  LIDIGVKCFVCSKDRELLCIEYLKKDKDLIFLLTTNVVTCLQNLAAHFIKKTRFKRIAIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GKTTTKEML   LS   KT    G+ N+ IG+PL++ R   D ++ +FE+G+S++GE
Sbjct: 126 GSNGKTTTKEMLYSILSERYKTCKTWGNLNSDIGLPLSILRTKGDEEYAVFEVGISYVGE 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +  +  ++ P I ++T ++ AH+  F  ++ +A  K++I    + T  + LN     +  
Sbjct: 186 MNIIAEILNPEIVIVTNVSYAHMQAFEDLKIVAYEKSKIIT--KDTKMLILNESCPQYVY 243

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  + ++       + +  N   +   +               K  +      G H   
Sbjct: 244 LEEIAKSVNPNINIFYFEFHNLQIRSFSFI----NDKFSYDFTYKGCDYSILLPGKHNIC 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  + +   L    +     L          K     +    + ++++SYN N +S  
Sbjct: 300 NAISCINLALFLGLSENEIRNGLLH----ADFQKGRAELVRIKDYLVLNDSYNGNLSSFM 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           A       +    + ++I VLG   E+G+ +   H    E + L N   ++L G    A+
Sbjct: 356 ALKE--MILDLEIKDKKIIVLGSFKELGKFAYEVHKTAIEEVVLMNFDKIFLIGEEFQAV 413

Query: 415 K--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           K  D+L  +  + Y    +       ++L  G  + +K S +    R+++ L
Sbjct: 414 KRVDSLSSNSCLFYFNNFESFIDCFVNALESGCFIAIKGSRTNRLERVLDYL 465


>gi|15827430|ref|NP_301693.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae TN]
 gi|221229907|ref|YP_002503323.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
 gi|20138886|sp|O69556|MURF_MYCLE RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|3080477|emb|CAA18672.1| udp-n-acetylmuramoylalanyl-d-glutamyl
           -2,6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Mycobacterium leprae]
 gi|13092980|emb|CAC31291.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae]
 gi|219933014|emb|CAR71005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           (D-alanine:D-alanine-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 517

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 119/520 (22%), Positives = 194/520 (37%), Gaps = 65/520 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G  + I P+      V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1   MIDL-TVARVTEIVGGALVDISPEEAAERRVTGSVEFDSRAVGPGGLFLALPGARSDGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGA-------LNKLAVAARLRS- 106
                       +      V +   + +P   V  D           L   A  +     
Sbjct: 60  HAA-------SAIAAGAVAVLAARPVGVPAIVVAPDPRTGDGGLTGVLEHDADGSGAAVL 112

Query: 107 -----------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                              TII ITGS GKT+TK+++ + L  + +  A   S+NN +G 
Sbjct: 113 AALAKLAKAVAAELVAGGLTIIGITGSSGKTSTKDLVAVVLELLGEVVAPPESFNNELGH 172

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P T+ R     D+ I E+     G I  L  +  P I V+  +  AHL  F   E IA  
Sbjct: 173 PWTVLRATRSTDYLILEMSARRPGNIAALAAIAPPKIGVVLNVGTAHLGEFGSREAIART 232

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--------NADFQLR 261
           K E+ + + ++G + LN DD     +   + A  I+                        
Sbjct: 233 KTELPQAIMQSGVVILNVDDPAVAAMADATVARVIRVSRGSYSHPGSPNSPDVWTGPVSL 292

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                   +      +  + E+     G H   N L    +     A V+    AL+   
Sbjct: 293 DELARPRFTLHTRDPRAGATEIQLGVYGDHQVANALCAAAVGLECGASVEEVAVALAATG 352

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI----------SPHGEGRR 371
           P      R +        T+ID++YNANP SM+A +  L+ I                R 
Sbjct: 353 PV--SRHRMQVTTRADGVTVIDDTYNANPDSMRAGLQALAWIAHGGTHDKNQPGSCARRS 410

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDAL----PRSIHVH 425
            AVLG+M E+GE S + H  +  +    ++S + +   G  + A+           +   
Sbjct: 411 WAVLGEMAELGEDSITEHDRIGRLAVRLDVSRLVVVGGGRSINAMHRGAVMEGSWGLETV 470

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      +++ +  GDVV++K+S+S G   L ++L+
Sbjct: 471 NVADPAAALTLLRAEVRPGDVVLIKASHSVGLGALADVLV 510


>gi|226321622|ref|ZP_03797148.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
 gi|226232811|gb|EEH31564.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi Bol26]
          Length = 463

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 188/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFIALKNMILDLNIQNKK--FIVLGAFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|291296378|ref|YP_003507776.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
 gi|290471337|gb|ADD28756.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Meiothermus
           ruber DSM 1279]
          Length = 439

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/468 (22%), Positives = 167/468 (35%), Gaps = 50/468 (10%)

Query: 1   MNPLWTFHDL-----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M P  T  +L          G           + +  DSR + P  AFFA+ G    G +
Sbjct: 1   MVPSNTPKELRPEWVASLTGGQVHPGAS--VAHDLHWDSRQVGPGVAFFALPGARTHGRE 58

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           F   AVQ GA  VV + +   +          V     AL  +  A R + + +++A+ G
Sbjct: 59  FGQQAVQAGAAFVVSDLNHPGA--------VQVARPERALLAVGRALRDQFRGSVLAVGG 110

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTTKE L   L       A  G+ NN  G+      +    +  + ELG+  L E+
Sbjct: 111 SSGKTTTKECLAQGL----AWPAPEGNLNNAPGLTRFFFHLEP-AEGCVVELGIDRLLEM 165

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT+L RP I V+T +   HL     +E +   ++ + +            +      L
Sbjct: 166 AELTYLARPDIGVLTGLGVEHLEGLGNLENVVREESWLLQVSPLRLASVQAAELLDLPNL 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  G            A     + K                        G      
Sbjct: 226 VTYGIEAGDFRAEGVEMGLEATRFRFEGKVVH-----------------LPYPGVGPVMG 268

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  +L   +   I+ L+      GR +R R          I ++YNANP S   
Sbjct: 269 ALAALAVARMLDKPLAQTIERLAALRLPPGRMQRLRLGGID----FIHDAYNANPLSF-- 322

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
                        GR+  VLG M E+G+ +   H++ A + +  + + V+  G       
Sbjct: 323 --KAGMAFLQAQPGRKWLVLGRMAELGQEALKHHLEAARLAAAVSPNLVF-VGPFAKQQA 379

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                       ET++     +   +  GD+V +K+S S G  RL+ L
Sbjct: 380 AEAG----GTAVETIEEAVQLLFGKVQPGDLVYLKASRSVGLERLLEL 423


>gi|15609294|ref|NP_216673.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-
           D-alanyl-D-alanyl ligase MurF [Mycobacterium
           tuberculosis H37Rv]
 gi|31793337|ref|NP_855830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamino
           pimelate-D-alanyl-D-alanyl ligase MurF [Mycobacterium
           bovis AF2122/97]
 gi|121638039|ref|YP_978263.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661973|ref|YP_001283496.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148823366|ref|YP_001288120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|218753880|ref|ZP_03532676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis GM 1503]
 gi|224990533|ref|YP_002645220.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           bovis BCG str. Tokyo 172]
 gi|254551195|ref|ZP_05141642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260205451|ref|ZP_05772942.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis K85]
 gi|289574840|ref|ZP_06455067.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289762318|ref|ZP_06521696.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|294993543|ref|ZP_06799234.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis 210]
 gi|306776407|ref|ZP_07414744.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|306798015|ref|ZP_07436317.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|61228235|sp|P0A5L4|MURF_MYCTU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|61228236|sp|P0A5L5|MURF_MYCBO RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2104321|emb|CAB08670.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Rv]
 gi|31618929|emb|CAD97034.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis AF2122/97]
 gi|121493687|emb|CAL72162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148506125|gb|ABQ73934.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis H37Ra]
 gi|148721893|gb|ABR06518.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis F11]
 gi|224773646|dbj|BAH26452.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289539271|gb|EFD43849.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis K85]
 gi|289709824|gb|EFD73840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis GM 1503]
 gi|308215195|gb|EFO74594.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu001]
 gi|308341705|gb|EFP30556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu006]
 gi|326903774|gb|EGE50707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis W-148]
          Length = 510

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/516 (25%), Positives = 201/516 (38%), Gaps = 63/516 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106
                       V     +V +   + +P   V      +VL  + +        +    
Sbjct: 60  HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KA
Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ + +  +G + LN DD     +   + A  ++          A             + 
Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTL 292

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q    EV     G H   N L    +     A V+    AL+   P      R +
Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389
                   T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H
Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407

Query: 390 IDLAEVLSLYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMD 431
             +  +    ++S + + G                      A  D       V+     D
Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGD 466

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 467 AALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|253798778|ref|YP_003031779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289554056|ref|ZP_06443266.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|297634746|ref|ZP_06952526.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|297731735|ref|ZP_06960853.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659070|ref|ZP_07815950.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|253320281|gb|ACT24884.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 1435]
 gi|289438688|gb|EFD21181.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 605]
 gi|328458541|gb|AEB03964.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis KZN 4207]
          Length = 510

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 130/516 (25%), Positives = 200/516 (38%), Gaps = 63/516 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106
                       V     +V +   + +P   V      +VL  + +        +    
Sbjct: 60  HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KA
Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ + +  +G + LN DD     +   + A   +          A             + 
Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVARVSRDNTGDVWAGPVSLDELARPRFTL 292

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q    EV     G H   N L    +     A V+    AL+   P      R +
Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389
                   T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H
Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407

Query: 390 IDLAEVLSLYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMD 431
             +  +    ++S + + G                      A  D       V+     D
Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGD 466

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 467 AALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|225549111|ref|ZP_03770086.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
 gi|225370337|gb|EEG99775.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 94a]
          Length = 463

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL       N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|312148181|gb|ADQ30840.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi JD1]
          Length = 463

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNIDDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL       N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|169629089|ref|YP_001702738.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus ATCC 19977]
 gi|169241056|emb|CAM62084.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF
           [Mycobacterium abscessus]
          Length = 491

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 123/499 (24%), Positives = 191/499 (38%), Gaps = 49/499 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
            T  ++ + + G   GI  Q      V G +  DSR ++P   F A+ G   DGHD    
Sbjct: 1   MTVAEIAEIVGGRLDGISAQEARQARVTGTVEFDSRQVSPGGLFLALPGARADGHDHAR- 59

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS------------- 106
                 G        V +   + +P   V     A  +++                    
Sbjct: 60  ------GAAEAGAVAVLAARPVGVPAIVVPPTGVARTEVSALEHDSDGSGAAVLAATAAL 113

Query: 107 -----------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                         I+ ITGS GKT+TK+++   LS + +  A  GS+NN +G P T+ R
Sbjct: 114 AAEVARRLTARGLRIVGITGSSGKTSTKDLIAAVLSPLGEVVAPPGSFNNELGHPWTVLR 173

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                 F + EL     G I  L  +  P I V+  +  AHL  F   + IA  K E+ +
Sbjct: 174 ATESTKFLVLELSARRPGNIAELAAIAPPSIGVVLNVGTAHLGEFGSRQAIADTKGELPQ 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   LN DD+    + AK+ A  ++T         A            ++   + 
Sbjct: 234 SLSGGGVAVLNADDAAVAAMAAKTPARVVRTSVHHPADIWATEVSVD---DLARARFTLH 290

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               S+ V     G H   N L    +     A +     AL+   P   R  R   +  
Sbjct: 291 AGQDSVPVQLAVHGEHHVSNALAAAAVALECGATLAQVAAALAGAGPVSRR--RMEVSTR 348

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQSFHIDLA 393
               T+I+++YNANP SM A +  L  ++ HG    R  AVLG+M E+G  + S H  + 
Sbjct: 349 DDGVTVINDAYNANPDSMMAGLKALVSMARHGGEPRRSWAVLGEMAELGPDAISEHDRIG 408

Query: 394 EVLSLYNISHVWLSGF--HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 ++S + + G      A+                 +        + S L  GDVV
Sbjct: 409 RAAVRLDVSRLVVVGTGRSQRAMHAGAVMEGSWGSEAVLVDDPAAAASLLASELAAGDVV 468

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +VK+S S G + + + LL+
Sbjct: 469 LVKASRSAGLWVVADELLK 487


>gi|15594649|ref|NP_212438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
 gi|3915785|sp|Q44777|MURF_BORBU RecName: Full=UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
           ligase; AltName: Full=D-alanyl-D-alanine-adding enzyme;
           AltName: Full=UDP-MurNAc-pentapeptide synthetase
 gi|2688162|gb|AAC66644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi B31]
          Length = 464

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 188/445 (42%), Gaps = 22/445 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                            K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLNIQNKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL +     N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLL 465
           L     +V+K S      R++N+  
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNIFR 464


>gi|282857255|ref|ZP_06266495.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
 gi|282584905|gb|EFB90233.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Pyramidobacter piscolens W5455]
          Length = 451

 Score =  175 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 115/443 (25%), Positives = 180/443 (40%), Gaps = 19/443 (4%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---F 86
           + +DSR     E F A++G   DGH FI   + KG  L+V          S   P     
Sbjct: 20  VRVDSRETQKGEGFVALRGTKVDGHRFIPDVLAKGGALIVCEAAAYREEWSSLYPQCAFI 79

Query: 87  GVDD-VLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              +     L  LA       +     +AITGSVGKT+ K      L    K +A  G+Y
Sbjct: 80  LTPERCEYGLASLASVYLKSLERLRETVAITGSVGKTSAKNDTKALLEGYFKIHAAAGNY 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           N  IG  +T+   P D +  + E+G +H GEI  +T  + P IA +T +APAHL NF  +
Sbjct: 140 NTLIGCAVTVLAAPADTEVVLLEMGANHRGEIAEMTRYLPPTIAAVTEVAPAHLENFGSL 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +  AK EIF        +    +    +    +     +      G+   A   L   
Sbjct: 200 EGVLQAKTEIFASENLRCAVINGDNGMLCKR-AEELRLPEVIRFGRRGEVLFAREHLSWE 258

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K       +   L G S  +     G H    +   + I   L         +L      
Sbjct: 259 KDHFTVRAILTGLDGLSFNLSLPLAGVHQLYPLCCAVAIAGRLGLSSREIAASLPKCR-- 316

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R    L++    ++DE YNA+PA++KA+++ +   S    GRR  +LG+M E+G 
Sbjct: 317 -NSAGRGEIRLSESGAAILDECYNASPAAVKASLAAMD--SADIPGRRFLILGEMLELGT 373

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ-SSLV 442
            S S H  + E     +   ++L G     +          +Y +++D L   +  +   
Sbjct: 374 ASVSEHGKIFERALRVS-DLLYLFGEEWKNV-----DGTADYYYDSIDALIEAVDGTRPG 427

Query: 443 DGDVVVVKSSNSCGFYRLINLLL 465
           +GDV++VK S      R++  L 
Sbjct: 428 EGDVILVKGSRGNHLERVVRALE 450


>gi|195941342|ref|ZP_03086724.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase (murF)
           [Borrelia burgdorferi 80a]
          Length = 463

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/444 (24%), Positives = 187/444 (42%), Gaps = 22/444 (4%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ +      
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYFDFENLSI----- 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                  +         K  E     +G H   N +  + +   L        +      
Sbjct: 267 -KSFSFLEGKFSFDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIKEG----L 321

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
            +    K     L +  + ++++SYN N  S  A  +++  +    +     VLG   E+
Sbjct: 322 IETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKNMILDLDIQSKK--FIVLGSFKEL 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSS 440
           GEL+   H DL       N   ++L G   L ++D+        +Y    D    F   S
Sbjct: 380 GELAYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKS 439

Query: 441 LVDGDVVVVKSSNSCGFYRLINLL 464
           L     +V+K S      R++N +
Sbjct: 440 LEPSVFIVIKGSRFNRLERILNYI 463


>gi|330443877|ref|YP_004376863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
 gi|328806987|gb|AEB41160.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila pecorum E58]
          Length = 435

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 110/438 (25%), Positives = 185/438 (42%), Gaps = 18/438 (4%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDSR + P + FFA+ G   DGH+F+ HA Q GA   V++ +      +  +  
Sbjct: 13  KISGVAIDSRQVQPGDLFFALPGKTTDGHNFLQHAAQAGAVAAVISQEYKGD--NYGLEF 70

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   AL +  +      +  II I+GS+GKTTTKE   + LSS+ + +    SYN+
Sbjct: 71  VRVEDPRKALQEAGLNKGRLFQGKIIGISGSLGKTTTKEFSNVFLSSVYRVFMSPKSYNS 130

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL++     D DF + E+G+S   ++  L  +V+P +AVIT IA  H  +F     
Sbjct: 131 QLTVPLSILMADGDEDFLLLEMGVSEPKDMHNLLSIVQPEVAVITHIATQHTMHF----- 185

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                       E           S  +LL   S         S    K +     +   
Sbjct: 186 -------PRGIQEIVEEKRQILQGSSLQLLPKDSPWYKDLCEVSPSAEKFSFSFHDQAAD 238

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +S     +  ++ +   +       Q     L I   L   ++T ++ L    P   
Sbjct: 239 FCYKSLDSHGVTIQTPDEDIYLPIAFPYQPAYANLLISVSLAWLLETPLEHLISSLPDLK 298

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                     +    +I+++YNA P +M AA+  L   SP   G+ I +LG M E+G  S
Sbjct: 299 LPPMRFEQSLRNGIHVINDAYNACPEAMLAALEAL--PSPSNGGKVILILGHMAELGVYS 356

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A    L     ++  G     +   +      V +      + + ++  +  G
Sbjct: 357 EEGHALVATKA-LSRAHVIFFIGEKWSPVLHMVQHHSCQVEFYSAPHDIEMILKDLVQQG 415

Query: 445 DVVVVKSSNSCGFYRLIN 462
           DVV++K S S     L+N
Sbjct: 416 DVVLLKGSRSLALESLLN 433


>gi|307298500|ref|ZP_07578303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915665|gb|EFN46049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 441

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/437 (23%), Positives = 179/437 (40%), Gaps = 27/437 (6%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             I IDSR ++  + F  +KG   DG+DF+  A+ KGA LV  +             V  
Sbjct: 17  RNIVIDSRKVSAGDVFIGLKGEKVDGNDFVGEALSKGASLVFSDKAFD------DQRVLR 70

Query: 88  VDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           VDD    L + A +   +SK    I ITGS GKTTTKE+ +  LS + + +   G+ N  
Sbjct: 71  VDDTNEILIEAAKSILSKSKLSNRIGITGSNGKTTTKEISSFFLSKLGRVFKTAGNLNTE 130

Query: 147 IGVP---LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           IG+P   L   R      +G+FE G S  G+I  L  +V+P IAV+  +  AH+ NF  I
Sbjct: 131 IGLPLSLLENRRELFSAQYGVFEFGTSTKGDIEKLVGIVQPDIAVLLNVGSAHVGNFKDI 190

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +E+   K  IF+    +  +    D+      + +  + G+         ++ DF +  +
Sbjct: 191 DELLQEKLSIFKSKRLSRAVLGGCDE------RLREFSKGLPVEVLLFGKEDVDFSIVDF 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 + +     G     +     Y    ++     +  ++  +  +           
Sbjct: 245 AYDKGDTMLHFFCDGDRFVRLRGIWSYGQLLDLGAAYLVARLVGVEEPSVFLNDY----- 299

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +               T+I + YN++  S ++AI  + ++    +   IAV G + E G 
Sbjct: 300 KLPFSDRFTVSILKGITVISDFYNSSLESWESAILSIEKLRSSRK---IAVAGSILEQGR 356

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +  H  L E+L         L    + A+  A         S++ + +  ++  ++  
Sbjct: 357 EEKRTHERLGELL--SKFDETVLFTRDM-AINAASKNVKPALVSDSEEEIAAWLHRNVRS 413

Query: 444 GDVVVVKSSNSCGFYRL 460
           GD+V  K+S +     +
Sbjct: 414 GDLVFFKASRAIALEGV 430


>gi|119953103|ref|YP_945312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
 gi|119861874|gb|AAX17642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-L-ornithine--D-alanyl-D-
           alanine ligase [Borrelia turicatae 91E135]
          Length = 464

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 98/445 (22%), Positives = 173/445 (38%), Gaps = 24/445 (5%)

Query: 31  SIDSRSIA-PQE---AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G    V + D  +          
Sbjct: 33  SLDSREINAKNSSASLYFAYKGDRVDGFSFVEYLIDIGVKCFVCSKDCESLCLEYLNRDE 92

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           ++      +V+  L  LA     R+    IAITGS GKTTTKEML   LS   KT    G
Sbjct: 93  NLVFLLTSNVVILLQNLAAHFITRTSFKRIAITGSNGKTTTKEMLYSILSERYKTCKTWG 152

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R   D ++ +FE+G+S++GE+  L  ++ P I ++T I+ AH+  F 
Sbjct: 153 NLNSDIGLPLSILRTEGDEEYAVFEVGISYIGEMNLLAEILNPEIVIVTNISYAHMQAFE 212

Query: 202 GIEE-IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            +E   A     + +  +               ++    +       + F   +   F  
Sbjct: 213 DLEIVTAEKGKIMTKSTQMVILNESCPYHLHLRVMAKSINPGINIFYFDFHSLQIRSFAF 272

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              K   + +        K  +      G H   N +  + +  +L    +     L   
Sbjct: 273 VNDKFFYDFT-------YKGFDYSILLPGQHNIFNAISCIHLALLLGLSENEIRNGLLH- 324

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                  K     L    + ++++SYN N  S  A       +    +G++  +LG   E
Sbjct: 325 ---ADFQKGRAELLRVKDYLILNDSYNGNLGSFMALKE--MILGLEIKGKKFIILGAFKE 379

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQS 439
           +G+ +   H      + L N    +L G     +K     +  ++ Y    +    +   
Sbjct: 380 LGKFAYEVHKTAIREVVLMNFDKGFLIGEEFQEVKKIENLALDNLFYFSNFENFIDYFVK 439

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
           +L     + +K S S    R+++ L
Sbjct: 440 NLESECFIAIKGSRSNRLERILDYL 464


>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 827

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/465 (21%), Positives = 185/465 (39%), Gaps = 11/465 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAV 61
           ++T   + + I  H   I  + F+     DSRS+       FFAI+    DGH +I    
Sbjct: 1   MYTLQTIAEKIHAHQCAIRSEVFIEHFLTDSRSLMHPQSTLFFAIRTVTGDGHLYIDQLY 60

Query: 62  QKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             G    VV  +               V DV+ +L K+A   R      ++ +TGS GKT
Sbjct: 61  NHGVRSFVVKDEFDKLTQQYPDANFLEVRDVIRSLQKIAAEWRREFNIPVVGVTGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L+   +      SYN+ +GVPL++ +M  +    IFE G+S LGE+  +  
Sbjct: 121 IVKEFLYQLLADTYRVVRSPRSYNSQLGVPLSVLKMTSEDQIAIFEAGISQLGEMARIEE 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P I VIT I  AH  NFS I +    K  +F G ++        D+        +  
Sbjct: 181 VIKPTIGVITNIGSAHQENFSSIAQKVDEKLLLFGGCDRIVYNM---DEPEIVAGLQRLG 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L     +S  K   A   +R  +   + + +   + G    +          +N+L  +
Sbjct: 238 LLSRARGWSR-KDPKAHLYVRSIETGRDTTKLNFLVLGIEYSIEIPFTDQASIENVLTCV 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I+   +    +  S   P      R           +I++ YN +  S+K A+   
Sbjct: 297 LTTIIINPSLIDHPELFSKLEPV---EMRLELIEGNKNNLIINDVYNNDINSLKIALDFQ 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q +   +   + +L ++ +     +  +  + E++  Y IS  +  G  + A ++  P 
Sbjct: 354 QQRATDADLEPVLILTEIQQSALNERPLYSRVGELIGKYRISKFYGIGKELFAYREFFPT 413

Query: 421 SI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            I   ++  +++          +    +++K + S    R+ + L
Sbjct: 414 EIGERNFFPSVEDFLSSDIPQQLSQACILIKGARSFHCERISDRL 458


>gi|213650215|ref|ZP_03380268.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
          Length = 370

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 108/382 (28%), Positives = 175/382 (45%), Gaps = 14/382 (3%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P   V D   A  +LA   R++  A ++A+TGS GKT+ KEM    LS    T     
Sbjct: 1   DLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAS 60

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F 
Sbjct: 61  NFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFG 120

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +  +A AK EI+ GL + G   +N D++ +   ++      +        + N+DF   
Sbjct: 121 SLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIGDRQVWR--FSPNAANSDFTAA 178

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S  +   +Q    S++V+    G H   N L    +   + A +      L+   
Sbjct: 179 NIHVTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALK 238

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              GR    + + N     ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+
Sbjct: 239 AVPGRLFPIQLSEN---QLVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAEL 291

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G  S++ H+ + E      I  V  +G     +  A   S    +      L   + + L
Sbjct: 292 GAESEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALL 348

Query: 442 VDG--DVVVVKSSNSCGFYRLI 461
            +     ++VK S S     ++
Sbjct: 349 QEQPMMTILVKGSRSAAMEDVV 370


>gi|188995058|ref|YP_001929310.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis ATCC
           33277]
 gi|188594738|dbj|BAG33713.1| alanine racemase [Porphyromonas gingivalis ATCC 33277]
          Length = 823

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 180/467 (38%), Gaps = 11/467 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            KG    V+ +                V   L AL ++A   R      +I ITGS GKT
Sbjct: 61  DKGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L  
Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P   +IT I  AH  NF  I+     K  +F              +   E + A   
Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFPHCHTIV------YNGDCEEIAAAIS 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+            +  L   +  S+ +  E+  +    +          A ++   +
Sbjct: 235 FCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPF-TDAASIEDII 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +++++      + A   F   E    R          T+I++ Y+ +  S+  A+   
Sbjct: 294 HCITLISVLCPEVLSARKRFASLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDFQ 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            + +     +++ +L D+ + G   +  +  +A  L +Y +      G  + + +     
Sbjct: 354 RRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA- 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   + + +       +        +++K +    F ++   L+++
Sbjct: 413 GMSAVFFKDVAAFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459


>gi|330955393|gb|EGH55653.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 377

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 113/387 (29%), Positives = 182/387 (47%), Gaps = 14/387 (3%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +G+S DSR I P + F A+ GP +DGH+++     KGA   +V  ++  +    ++
Sbjct: 3   DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKGAVGALVEREVQGA----AL 58

Query: 84  PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           P   V D   AL +L    R       + A+TGS GKTT KEML   L +     A  G+
Sbjct: 59  PQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVKEMLASILRTRGPVLATRGN 118

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
            NN +GVPLTL  +  +    + ELG S +GEI +   L +PH+A+IT    AH+  F G
Sbjct: 119 LNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGG 178

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            + I  AK EI EGL   GT  LN +D  F + + ++    + T      + +       
Sbjct: 179 PDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDRNVLTFALTDSAADVYASELS 238

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +         +     +  V  + +G H   N L        +   ++  +  L+   P
Sbjct: 239 -RDARGCPAFTLNSPLGTARVQLNLLGTHNVSNALAAAAAGCAMGVPLEGIVTGLNNVQP 297

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            +GR       +      +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G
Sbjct: 298 VKGRAVAQ---IASNGTRVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELG 350

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGF 409
           E ++  H ++    +   +S ++  G 
Sbjct: 351 EWAEQGHREVGAYAA-GKVSALYAVGP 376


>gi|224534237|ref|ZP_03674815.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
 gi|224514339|gb|EEF84655.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia spielmanii A14S]
          Length = 463

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 111/446 (24%), Positives = 190/446 (42%), Gaps = 26/446 (5%)

Query: 31  SIDSRSIAPQE-----AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGS 80
           S+DSR I   +      +FA KG   DG  F+ + +  G    + + D  +        +
Sbjct: 32  SLDSREIN-GDNINVSLYFAYKGNKVDGFSFVKYLIDLGVKCFICSRDHESECIEYLNDN 90

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +      DV+  L  LA     R+    IAITGS GKTTTKEML   LS   KTY   
Sbjct: 91  EGLVFLLTSDVIKLLQTLASVLIERTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTW 150

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I  AH+  F
Sbjct: 151 GNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMELLSQILKPEIVIITNINYAHMQAF 210

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++ IA  K++I     +   +    D   +   +AK     +K +Y   ++ N     
Sbjct: 211 KELQAIAFEKSKIIGKNIEIFVVNEKNDYCAYLEKRAKIANPNVKIVYFDFENLNI---- 266

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                   +         K  E     +G H   N +  + +   L        + L   
Sbjct: 267 --KSFSFLEGKFSYDFVYKGFEYSILLLGRHNIFNAIGCINLALFLGMREKEIREGLIET 324

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                  K     L +  + ++++SYN N  S  A  +++  ++   +     VLG   E
Sbjct: 325 T----FQKGRAEILIKNGYLILNDSYNGNMGSFIALKNMILDLNIQNKK--FIVLGSFKE 378

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQ 438
           +GE +   H DL +     N   ++L G   L ++  + L     ++Y    D    F  
Sbjct: 379 LGEFAYKTHKDLIQEAVSMNFDKIFLIGEEFLDVRYSENLVEKC-LYYFSEFDKFIDFFL 437

Query: 439 SSLVDGDVVVVKSSNSCGFYRLINLL 464
            SL     +V+K S      R++N +
Sbjct: 438 KSLEPSVFIVIKGSRFNRLERVLNYI 463


>gi|15805794|ref|NP_294492.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
 gi|6458474|gb|AAF10342.1|AE001931_13 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           radiodurans R1]
          Length = 433

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 107/460 (23%), Positives = 170/460 (36%), Gaps = 58/460 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                   ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ +         L
Sbjct: 15  PQARPARRLTWDSREAGPDTAFVALPGEKMHGNRFVERALAAGAPFVLTD---------L 65

Query: 82  SIP-VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +P    VDD  GAL   A + R ++   ++ ITGS GKTT K     AL +        
Sbjct: 66  DVPRAVRVDDARGALFAWARSERAKNPL-VVGITGSAGKTTAKSYAAAALDAHFM----- 119

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
             +N    +   L +        + E+G+ H+GE+  L  LVRP + V+TTI PAHL  F
Sbjct: 120 PVFNTMPAIACFLVQYGASQKPLVVEMGIDHIGEMAELMDLVRPDVGVVTTIGPAHLEQF 179

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +E IA  K +I                   +                        +  
Sbjct: 180 GMVETIAHEKGQILTARRALVGSQAAAFFPKAQF------------------PHVDSYGF 221

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  E   +  Q        +   +           +  + +          A    
Sbjct: 222 GDVTFRGEGLELSPQAARFRFGGMGVILPLASRVQAEAAVLGMVLAREAGIALADAAVRM 281

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE-GRRIAVLGDMC 379
              E      R  L+ G FT+ID++YNA+P +++AA+  L  + P GE GRRI+VLG M 
Sbjct: 282 SAVEVP--GGRYRLHPGRFTVIDDAYNASPVAVRAALDALHALKPEGEVGRRISVLGRML 339

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E+G   +  H ++            +  G     L +            T+  L   + +
Sbjct: 340 ELGPTERELHAEVGSYAREQ-ADLTYGVGEFAQELGE--------RAFATVPELLADLLN 390

Query: 440 SLVDGDVVVVKSSNSC------------GFYRLINLLLEE 467
            + DGD+V+VK+S               G   ++  LL++
Sbjct: 391 EVRDGDIVLVKASRGISLTPEQRAVTGVGLDVVVEALLDQ 430


>gi|237714254|ref|ZP_04544735.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229445746|gb|EEO51537.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 830

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 185/470 (39%), Gaps = 33/470 (7%)

Query: 21  IVPQGFVNGISIDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
              +  ++ +  DSRS++   +  FFA+      G  +I     +G    V+  +    I
Sbjct: 2   GKHKATIDWLLTDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLI 61

Query: 79  GSLSIP----------------------VFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +  +                          V + L AL KLA A R + K  +I ITGS
Sbjct: 62  ENGELKMEKSGQDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT  KE L   LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+ 
Sbjct: 122 NGKTIVKEWLHQLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMG 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  +++P I ++T I  AH  NF  ++E    K  +F+  +           +    L 
Sbjct: 182 ALKRMIKPTIGILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGDNELI 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +   A  + T      S+    +     +  ++    V             I +    ++
Sbjct: 235 SNCVAKSMLTAREIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASI 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L  ++     +  A +        E    R      +    LI++SYN++ AS+  A
Sbjct: 295 ENVLNCLAACLYLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIA 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L + S     +R  +L D+ E G+ + + +  +A+++    I+ +   G  + +   
Sbjct: 355 LDFLVRRSEKKGLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSA 414

Query: 417 ALPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +  ++    + L    I  SL   +V++VK S    F  +   L 
Sbjct: 415 RFDDDLERYFFPNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEELE 463


>gi|300871879|ref|YP_003786752.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
 gi|300689580|gb|ADK32251.1| UDP-N-acetylmuramoylalanyl-glutamyl-2,
           6-diaminopimelate-alanyl-alanine ligase [Brachyspira
           pilosicoli 95/1000]
          Length = 448

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 111/468 (23%), Positives = 204/468 (43%), Gaps = 36/468 (7%)

Query: 6   TFHDLLQA---IQGHSIGIVPQGFVN-GISIDSRS-IAPQEAFFAIKGPHYDGHDFILHA 60
           +  D+++         I        N  IS DSR      + F AIKG  ++G+DF L  
Sbjct: 5   SLKDIIKIANETNSKCIFNYTDENKNLQISTDSREDFNENKLFLAIKGDKFNGNDFALDT 64

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    +++ ++          V   +D +    KLA   R R    +++ITGS GKT
Sbjct: 65  YNKGCRFFILSENI---NMPKDANVVYTNDSVLFFIKLAREYRRRFNIKVVSITGSCGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKE+  + L +  KT    G++NN IGVP T+  +    +  + E GM+H  E+  ++ 
Sbjct: 122 TTKELTALFLGTKYKTLKTEGNFNNEIGVPKTIFNLDDSYEMAVIEAGMNHKNELLRISE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     +I  + P H++    +E IA AK+E+F   ++   I  N +     L +AK+ 
Sbjct: 182 AIEADTVIINNVEPVHIAFLGSLENIALAKSELFNNAKENAIINKNTNKVDILLSEAKNK 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +         + K  +     +K               ++   H+ IG    QN+LM L
Sbjct: 242 KIKNIIEADIKEIKKINDNSFVYK---------------NVTFNHNLIGDFNLQNILMAL 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   D++   KAL+ +       K     +     ++I++ YN+NP ++    ++L
Sbjct: 287 KAAELYNIDLEECAKALTNYQ----NQKNRMQIIKINNCSIINDCYNSNPTAL---KNML 339

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLSGFHVLALKDALP 419
             +S   E R+IA++GDM E    + SFH ++   ++   NI+ V   G +   + + + 
Sbjct: 340 IYLSKREEKRKIAIIGDMLETETQNSSFHKEIGIFINSLKNINEVITVGDNSQKIDNEVT 399

Query: 420 RSIHVHYSETMDGLFLFIQSSLV---DGDVVVVKSSNSCGFYRLINLL 464
            S    + + ++     I   +    +   +++K+S    F  +I  +
Sbjct: 400 CSK--MHFKKVEESINTIIDIIKNSNEETAILIKASLGMRFNMIIEAI 445


>gi|228471274|ref|ZP_04056080.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
 gi|228306916|gb|EEK16014.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas uenonis 60-3]
          Length = 456

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 14/444 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---DMVASIGSLSIP 84
           +GI  D+R + P   F +++G H+DG+ F   A+++G    +V+            L   
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALVDDLSYIDAVEEADLRER 77

Query: 85  VFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G+Y
Sbjct: 78  LIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQGNY 137

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F   
Sbjct: 138 NNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFGTP 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E +  AK+E++  L +         +   + L +  + L           +     L   
Sbjct: 198 EGVVKAKSELYAYLREHDGQAFCNGED--KTLISNLNGLPTVYYNGTSSPRITGSVLPTD 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +    +     Q  G+S ++    +G +   N+L  + +      D  T  +A++ + P 
Sbjct: 256 ETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQP- 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
               +            +I + YNANP+SM+ A++    +   G  R   +LGDM E+G+
Sbjct: 315 -HNERSQVLPPTAQGNRVILDCYNANPSSMEVALNSYFTMDSQGLNRM-LILGDMNELGD 372

Query: 384 LSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            ++S HI +   +  Y + +     +  G +  AL+     + H  +  +   L  +   
Sbjct: 373 AAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQGHY-GNEHFIFFPSATALKQYFTR 431

Query: 440 SLVDGDVVVVKSSNSCGFYRLINL 463
                  +++K SNS     +  L
Sbjct: 432 HQPQHSFILIKGSNSHHLSSIAEL 455


>gi|118618799|ref|YP_907131.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
 gi|118570909|gb|ABL05660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium ulcerans Agy99]
          Length = 525

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 120/516 (23%), Positives = 198/516 (38%), Gaps = 75/516 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPH--------- 50
           +T  ++ + + G  + I PQ      V G +  DSR++ P   F A+ G           
Sbjct: 4   YTVAEIAEIVGGTLVDISPQEAEQRRVTGTVEFDSRAVGPGGLFLALPGARADGHDHAAA 63

Query: 51  --------------YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
                                      G   +VV+ +  ++  +L+  +    D  GA  
Sbjct: 64  AVAAGAVAVLAARPV------------GVSAIVVSPEPDSTADALTGVLEHDADGSGAAV 111

Query: 97  KLAVAARLRS--------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
             A+A   ++          TII ITGS GKT+TK+++   L  + +  A  GS+NN +G
Sbjct: 112 LAALAKLAKAVAAELMAGGLTIIGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELG 171

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            P T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA 
Sbjct: 172 HPWTVLRATRSTDYLILEMSARHPGNIAALARVAPPAIGVVLNVGTAHLGEFGSREIIAQ 231

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKA----KSHALGIKTIYSFGKSKNADFQLRKWK 264
            K+E+ + +  +G + LN DD     +      +   +G  T    G +   D       
Sbjct: 232 TKSELPQAVPASGVVILNADDPAVAAMAEVTAARVVRVGRATATGAGWAGPGDVWAGPVS 291

Query: 265 QCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +    +     + +V     G H   N L    +     A V     AL+   P 
Sbjct: 292 LDRLARPQFTMHAGDAAAQVRLGVYGDHQVSNALCAGAVALECGASVSQVAAALAEAGPV 351

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH--------------GEG 369
                R R +      T+ID++YNANP SM+A +  L+ I+                   
Sbjct: 352 --SRHRMRVSTRPDGVTVIDDAYNANPDSMRAGLQALAWIARGEAESTAASQPGVRPQSR 409

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDAL----PRSIH 423
           R  AVLG+M E+G  + + H  +  +    ++S + + G    + A+             
Sbjct: 410 RSWAVLGEMAELGADAITEHDHIGRLAVRLDVSRLVVVGTGRSMSAIYHGAVMEGSWGTE 469

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                  D     +++ +  GDVV++K+SNS G   
Sbjct: 470 AVSVPDRDAALALLRAEIQPGDVVLIKASNSAGLGE 505


>gi|149918773|ref|ZP_01907260.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
 gi|149820374|gb|EDM79790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 129/486 (26%), Positives = 199/486 (40%), Gaps = 32/486 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W+   L  A  G  +       +    IDSR+  P   F  I     DGHDFI  A+  G
Sbjct: 3   WSPERLAAAASGRLLRAGT-RPIQAAFIDSRTPTPGGLFVPIVAAR-DGHDFIPAALAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V      ++      V  V D L  L +LA  AR +    ++AITGS GKTTT+ 
Sbjct: 61  ASATLVGPGRGEAVPEGDFTVVEVGDTLEGLTQLARDARAQLDGPVVAITGSNGKTTTRA 120

Query: 125 MLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDF---GIFELGMSHLGEIRFLTH 180
            +  AL +         G++NNH+G+PLTL       +     + ELGMS  GE   L  
Sbjct: 121 FVEAALRTAFDPLICTQGNFNNHLGLPLTLVGGVAGTEPPRAAVLELGMSAPGENDHLAQ 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------ 234
           +  P + VIT+IA  HL     +E IA+A+AE    L  +G           E       
Sbjct: 181 VAGPSVHVITSIALEHLEFMGSLEAIAAAEAEPLAHLRASGGHRPLAVLPGDEPALVPHL 240

Query: 235 ------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L+          I +         ++    +   +   E   + +++ +     
Sbjct: 241 PGPDSGLRVLRFGSPDAAIGAPLDVAIVAVEVGARTRAVLRLRGEDGQEDRALSLSLRTF 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A+N    + + + L  D+D   +AL    P   RG+     L      LI + YNA
Sbjct: 301 GAHNARNAAAAVAVAAHLGLDLDAVARALEAVEPVGDRGRLLELELGGHTHALIADCYNA 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP SM AA+  L+ +    +G R+AVLGDM E+G    + H ++    +   I  V   G
Sbjct: 361 NPGSMSAALGSLAML----DGPRVAVLGDMLELGPDEDALHREVGTEAARLGIDAVLGVG 416

Query: 409 FHVLALKDALPRSIHVHYS-----ETMDGLFLFIQSSL----VDGDVVVVKSSNSCGFYR 459
               A+ +A   +     +     + +D    +I++ L      G  V+ K+S      R
Sbjct: 417 PRARAIAEAAADAKPGLVAHAVERDAVDEACAWIRARLEGASEPG-AVLFKASRGIQLER 475

Query: 460 LINLLL 465
           ++  L 
Sbjct: 476 VVEALR 481


>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
 gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 112/466 (24%), Positives = 187/466 (40%), Gaps = 15/466 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL A  G     V     +G S DSR  A  E F A++ P  DGH +I  A+  
Sbjct: 1   MIDLDDLLAA-GGRLASPVYARQFSGFSYDSRLTAAGELFLALRTPRGDGHAYIADALAA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  V+            +  +   DD      + A A   +    +I +TGSVGKT+  
Sbjct: 60  GATGVICEKPPADL---SNTTMIVTDDPALLAARWAAARLRQVAPRVIGVTGSVGKTSAT 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +   LS +  T+    S+N+ IG+P++LAR+  D  F + E G ++ GE+  LT L  
Sbjct: 117 RAIAAVLSGLAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELHRLTALFP 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AV+T+ AP  LS F  + ++      +   L   G   +N DD     L        
Sbjct: 177 PHVAVVTSAAPMRLSAFGSVADLVREYGALVAALPVDGWAVVNGDDPALAGL----CDTT 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG   + D +    +     + M V  +G+S++ V   IG       L  +G  
Sbjct: 233 RARVLTFGTGASCDLRGEAPQYALNGTRMRVCYRGESVDTVIPLIGEPAVGAALAAVG-- 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +      T  +A       E    R R  L +    +ID++  A P++M AA+  L+ +
Sbjct: 291 -VALVCGMTLERAAERLALVEPPAGRLRPHLARSSAIVIDDTVGAEPSAMLAALRTLAIL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
                   +  L     +       +  +  + +      +   G     +  A+ R   
Sbjct: 350 PAQRRIAVLGDLPADSSIPGEQNDTYAAIGRLAART-ADLLIWKGDAGTHVMRAVQRVRT 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +      T+ G    +   L  GD+V+V    +    RL+  L++
Sbjct: 409 GMSATLVHTIAGALEALPPDLGAGDLVLVCGGATARLERLVAALID 454


>gi|171057209|ref|YP_001789558.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
 gi|170774654|gb|ACB32793.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Leptothrix
           cholodnii SP-6]
          Length = 489

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 121/491 (24%), Positives = 193/491 (39%), Gaps = 39/491 (7%)

Query: 1   MNPLWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           MN L T       +++      +       +  +  D+RS+   + F A++G  +D HDF
Sbjct: 1   MNTLMTLEHAHALIVRRQPAARLVGDGCQPIARVHSDTRSLRAGDLFVALRGERFDAHDF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A   GA   +    + AS     +P   V D L AL  LA   R      +IA+TGS
Sbjct: 61  LPQAQAAGAVAAIAERGLDAS----GMPGIEVPDSLLALQALAAGWRAEHLLPVIAVTGS 116

Query: 117 VGKTTTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            GKTT  +M+   L +      +A  G++NNHIGVPLTL  +       + ELGM+H GE
Sbjct: 117 NGKTTVTQMIAAILRAWLGDAAHATAGNFNNHIGVPLTLLALHAGHRAAVVELGMNHPGE 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  L  + +P +A++      H      +E +A     +   L   G      DD +  +
Sbjct: 177 IAELARIAQPTVALVNNAQREHQEFMQTVEAVARENGCVISALPADGVAVFPADDDYTPI 236

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +  +    + T         AD   +      +           S+++     G H  +
Sbjct: 237 WRELAQPRRVLTFALAEAGVAADCVAQA-SWAGDHWQARFDTPAGSIDLALGVAGRHNVK 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L            +D   + L+ F   +GR +           TL+D+SYNANP S++
Sbjct: 296 NALAACACALAAGCPLDAVQRGLAGFAAVKGRSQVSLLDWGGRQVTLVDDSYNANPDSVR 355

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
           AAI VL+ +       R  +LGDM E+G+   +FH ++  + +   I H W +G      
Sbjct: 356 AAIEVLAALPA----PRWLLLGDMGEVGDQGPAFHAEVGTLAAQRGIDHFWTAGVLCADA 411

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-------------------VVVKSSNSC 455
             A   ++H  +        L        GD                    V+VK S   
Sbjct: 412 ARAYADAVHASH-----DATLVAHHVSYHGDTAALLQAIAAAGVALPPAASVLVKGSRFM 466

Query: 456 GFYRLINLLLE 466
              + +  L E
Sbjct: 467 AMEKAVAALRE 477


>gi|145641280|ref|ZP_01796860.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae R3021]
 gi|145274117|gb|EDK13983.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Haemophilus influenzae 22.4-21]
          Length = 399

 Score =  171 bits (434), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 113/412 (27%), Positives = 185/412 (44%), Gaps = 23/412 (5%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            +GA  +VV  +  + +    +P   V D   AL +LA   R +     +A+TGS GKTT
Sbjct: 2   SQGALALVVQQENSSIL----VPQLVVKDTRIALGELAKWLREKINPRTVAMTGSSGKTT 57

Query: 122 TKEMLT----IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            KEM         +  +      G++NN IGVPLTL R+     F + ELG +H  EI +
Sbjct: 58  VKEMTASILQHTAADSEAVLFTNGNFNNDIGVPLTLLRLTEKHRFAVIELGANHQNEINY 117

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T LV+P+ A+I  IAPAHL  F  +  +  AK EI+ GL K G   +N + +  ++ + 
Sbjct: 118 TTKLVQPNAALINNIAPAHLEGFGSLAGVVQAKGEIYRGLTKNGVAIINAEHNHLDIWQK 177

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     I+           D+ ++  +   + S   +      +++    +G H  +N L
Sbjct: 178 EISNHAIQ------YFNGKDYSVKNVQGNEQGSTFTLVSPQGEIDISLPYLGEHNVKNAL 231

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   + A +      L      +GR    +   N     L+D++YNAN  S+ AAI
Sbjct: 232 AATALAMNVGATLADVKAGLEQRSQVKGRLFPIQVTPNL---LLLDDTYNANKDSLCAAI 288

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            VL          RI  + DM E+GE S + H ++ + ++L N+  V   G     + +A
Sbjct: 289 DVLKSYDA----FRILCVADMKELGENSLAIHREVGQYINLVNLDLVCSYGNESAVISEA 344

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGD--VVVVKSSNSCGFYRLINLLLEE 467
           +        +E +D L   I++ L      VV+ K S S     +I  L ++
Sbjct: 345 VLGKHFTDKTEMVDFLVPLIENQLQQNKKVVVLGKGSRSMKMEDVIYSLKDK 396


>gi|237717941|ref|ZP_04548422.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|299146913|ref|ZP_07039981.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
 gi|229452743|gb|EEO58534.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298517404|gb|EFI41285.1| Mur ligase domain protein/alanine racemase [Bacteroides sp. 3_1_23]
          Length = 820

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 101/459 (22%), Positives = 181/459 (39%), Gaps = 33/459 (7%)

Query: 32  IDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----- 84
            DSRS++   +  FFA+      G  +I     +G    V+  +    I +  +      
Sbjct: 3   TDSRSLSFPEETLFFALTTKRNSGVRYIPELYDRGVRNFVITEEDFKLIENGELKMEKSG 62

Query: 85  -----------------VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
                               V + L AL KLA A R + K  +I ITGS GKT  KE L 
Sbjct: 63  QDDDAQPILNSQLSTLNFLIVPNPLKALQKLAEAHRDKFKIPVIGITGSNGKTIVKEWLH 122

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             LS  +       SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I 
Sbjct: 123 QLLSPDRCIVRSPRSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIG 182

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++T I  AH  NF  ++E    K  +F+  +           +    L +   A  + T 
Sbjct: 183 ILTNIGGAHQENFFSLQEKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTA 235

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                S+    +     +  ++    V             I +    ++   L  ++   
Sbjct: 236 REIAWSRRDIERPLYISRVIKKEDHTVISYRYLEMDNTFCIPFIDDASIENVLNCLAACL 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A +        E    R      +    LI++SYN++ AS+  A+  L + S   
Sbjct: 296 YLMTPADQITERMARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKK 355

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             +R  +L D+ E G+ + + +  +A+++    I+ +   G  + +        +  ++ 
Sbjct: 356 GLKRTLILSDILETGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFDDDLERYFF 415

Query: 428 ETMDGLFLF-IQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + L    I  SL   +V++VK S    F  +   L 
Sbjct: 416 PNTEALLTSGILKSLHS-EVILVKGSRVFNFDLVSEELE 453


>gi|325473771|gb|EGC76959.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Treponema denticola F0402]
          Length = 430

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/426 (24%), Positives = 170/426 (39%), Gaps = 27/426 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L T  +LL +     +           + +DSR++     F  ++G + DGH +I  A++
Sbjct: 14  LMTLDELLTSTGAWLVYESSSSKAFSSVVMDSRNVKNNSLFIPLRGENQDGHVYIEPALK 73

Query: 63  KGAGLVVVNTDMVASI--------GSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAI 113
            GA   VV+ D +            +       V + L AL   A     +      I I
Sbjct: 74  NGAKFFVVDFDYLDENETALLSLCKNYDASCVAVKNNLKALQDAARYYLSKFPNLYKIGI 133

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKE+L    S    T +  G+ N+  G+PL++  +  + + GIFELGM+  G
Sbjct: 134 TGSSGKTTTKEILASIYSKKYNTVSTKGNLNSETGLPLSVFEVRPEHEAGIFELGMNRKG 193

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  ++ P+ A+IT I  AH+      + IA  K EIF   +          D    
Sbjct: 194 EIAEIASVLLPNAAIITNIGTAHIGILGTKQAIAEEKKEIFSFFK----------DDALG 243

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +        +K +        +D      ++  +   +  ++  +  E++    G +  
Sbjct: 244 FIPECEFTDFLKDVPRGSVFTVSDNDSSLVQKVEDAGVLGSKIFYRGEEILFPLPGVYNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N L+ + +              L    P  G     R  +  GF T   + YNANP SM
Sbjct: 304 KNALLCIALAEKKGFSAKEIKSGLEAVRPLFG-----RSQVLHGFVTYFLDCYNANPDSM 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K+AI     I+         VL  M E+G  S   H  + E     N  +++  G  + +
Sbjct: 359 KSAIEFCDSINTECAKHY--VLASMLELGAKSDYEHKKIIEDALKSNADNLYFFGDDICS 416

Query: 414 LKDALP 419
             + L 
Sbjct: 417 AFEGLN 422


>gi|34540830|ref|NP_905309.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Porphyromonas gingivalis W83]
 gi|34397144|gb|AAQ66208.1| Mur ligase domain protein/alanine racemase [Porphyromonas
           gingivalis W83]
          Length = 823

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 180/467 (38%), Gaps = 11/467 (2%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAV 61
           ++ F +L + +   ++ IV    +  +  DSR+++      FFA++    DGH +I    
Sbjct: 1   MFLFSELCRRLSPDAVRIVSDHRIVHLLTDSRTLSEPATTLFFALRTTSGDGHLYIRDLY 60

Query: 62  QKGA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +G    V+ +                V   L AL ++A   R      +I ITGS GKT
Sbjct: 61  DRGVRSFVISDPSKDLMEKMPQANWMRVAHPLDALQRIAALRRSMFDIPVIGITGSNGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   L    +      SYN+ IGVPL++ +M  +   GIFE G+S +GE+  L  
Sbjct: 121 IVKEFLYQLLRKDYRIVRSPRSYNSQIGVPLSVWQMAEEHTLGIFEAGISQMGEMERLES 180

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++ P   +IT I  AH  NF  I+     K  +F              +   E + A   
Sbjct: 181 IICPSYGIITNIGGAHQENFPDIKTKLEEKLRLFLHCHTIV------YNGDCEEIAAAIS 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G+            +  L   +  S+ +  E+  +    +          A ++   +
Sbjct: 235 FCGLARAGVSWSRTKPEAHLYVCRLESKDNRTEIDFRCLGKDYSLVLPF-TDAASIEDII 293

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +++++      + A   F   E    R          T+I++ Y+ +  S+  A+   
Sbjct: 294 HCITLISVLCPEVLSARKRFAGLEPVEMRMEVKAGDHGNTIINDVYSNDVYSLTLALDFQ 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            + +     +++ +L D+ + G   +  +  +A  L +Y +      G  + + +     
Sbjct: 354 RRRTAETCLKKVLILSDILQSGMPPEELYRHVAGQLQVYALDFFVGIGEEIASHRTCFA- 412

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +   + + +       +        +++K +    F ++   L+++
Sbjct: 413 GMSAVFFKDVATFLTSGEIERFSNSCILLKGARKYRFEQITERLVQQ 459


>gi|297566098|ref|YP_003685070.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
 gi|296850547|gb|ADH63562.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Meiothermus silvanus
           DSM 9946]
          Length = 430

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 103/453 (22%), Positives = 177/453 (39%), Gaps = 44/453 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + Q  QG      P      ++ DSR + P  AF A+ G    G +F   A+Q GA LV+
Sbjct: 17  VAQVTQGRVH--PPVKPALDLTWDSRKVKPGSAFIALPGTKVHGREFAQAALQAGAALVL 74

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +     +          V D   AL +L  A R     T++ + GS GKTTTKE +   
Sbjct: 75  TDQAHPGA--------VQVADPARALLELGHALRKEFSGTVVGVGGSSGKTTTKEAIAQG 126

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L       A  G+ NN  G+     R+       + ELG+  LGE+  L +L  PH+ V+
Sbjct: 127 L----GWPAPEGNLNNAPGLAQFFFRLQPHAPGAVVELGIDRLGEMAELCYLAEPHLGVL 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT+   HL     +E +   +  +              +      LK      G      
Sbjct: 183 TTLGAEHLEGLGTLENVIREETGLLASSPVRLASTQAAELVNLPGLKTYGIEAG------ 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  DF+    +   + +      Q   +     G        + +   +   L   
Sbjct: 237 -------DFRATDLELSLDSTRFRFNGQRVYLPYPGFGPLLGALAALAVAELVGVALDPV 289

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++                      L++G    ++++YN+NP S++A +  LS +     G
Sbjct: 290 IERLAH--------LQLPFGRMERLHKGGLIFLNDAYNSNPLSVRAGLEFLSHLP----G 337

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R+  VLG+M E+GE S ++H++ A + +  +   V+  G +      A          ET
Sbjct: 338 RKWLVLGEMRELGEESLAYHLEAARLAASVSPDVVF-VGKYAP--AQAAETGKVG--LET 392

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++    ++++    GD+V +K+S S G  +L+ 
Sbjct: 393 LEEAKAYLKTHAQAGDLVYLKASRSIGLEQLLE 425


>gi|213023448|ref|ZP_03337895.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 242

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 121/238 (50%), Gaps = 8/238 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 10  MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 67  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           + KEM    LS    T     ++NN IGVP+TL R+  D D+ + ELG +H GEI +   
Sbjct: 122 SVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVS 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           L RP  A++  +A AHL  F  +  +A AK EI+ GL + G   +N D++ +   ++ 
Sbjct: 182 LTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSI 239


>gi|313885847|ref|ZP_07819588.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924676|gb|EFR35444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 458

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 16/446 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V+      ++  S   L 
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 83  IPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  AK+E++  L +         +   + L +  + L           +     L 
Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGED--KTLISNLNGLPTVYYNGTTSPRVTGAVLP 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +    +     Q  G+S ++    +G +   N+L  + +      D  T  +A++ + 
Sbjct: 256 TDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQ 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P     +            +I + YNANP+SM+ A+S    +   G  R   +LGDM E+
Sbjct: 316 P--HNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQGLNRM-LILGDMNEL 372

Query: 382 GELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           G+ ++S HI +   +  Y + +     +  G +  AL  A   S H  +  +   L  + 
Sbjct: 373 GDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSATALKQYF 431

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
                    +++K SNS     +  L
Sbjct: 432 TRHQPQHSFILIKGSNSHHLSSIAEL 457


>gi|148984108|ref|ZP_01817403.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
 gi|147923397|gb|EDK74510.1| cell division protein FtsZ [Streptococcus pneumoniae SP3-BS71]
          Length = 370

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 107/378 (28%), Positives = 165/378 (43%), Gaps = 21/378 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA + +   ++       + P   VDDVL A   LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAVTLSEKEVS------NHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     + +  D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLVPADPIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEGRRIAVLGDMCEM 381
             +  G++IAVL DM  +
Sbjct: 343 PANEGGKKIAVLADMKGL 360


>gi|15841649|ref|NP_336686.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|13881901|gb|AAK46500.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 510

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 129/515 (25%), Positives = 201/515 (39%), Gaps = 61/515 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M  L T   + + + G    I PQ      V G +  DSR+I P   F  + G   DGHD
Sbjct: 1   MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLRLPGARADGHD 59

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRS---- 106
                       V     +V +   + +P   V      +VL  + +        +    
Sbjct: 60  HAA-------SAVAAGAAVVLAARPVGVPAIVVPPVAAPNVLAGVLEHDNDGSGAAVLAA 112

Query: 107 ---------------KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                            TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P 
Sbjct: 113 LAKLATAVAAQLVAGGLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPW 172

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL  F   E IA  KA
Sbjct: 173 TVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKA 232

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ + +  +G + LN DD     +   + A  ++          A             + 
Sbjct: 233 ELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTL 292

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q    EV     G H   N L    +     A V+    AL+   P      R +
Sbjct: 293 HAHDAQ---AEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQ 347

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFH 389
                   T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H
Sbjct: 348 VTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEH 407

Query: 390 IDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSI---------HVHYSETMDG 432
             +  +    ++S + + G         H   L++A                      D 
Sbjct: 408 DRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEEAWGSGEATADHGADRTAVNVADGDA 467

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 468 ALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 502


>gi|160886878|ref|ZP_02067881.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
 gi|156107289|gb|EDO09034.1| hypothetical protein BACOVA_04892 [Bacteroides ovatus ATCC 8483]
          Length = 821

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 173/446 (38%), Gaps = 31/446 (6%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAG-LVVVNTDMVASIGSL-------------------- 81
           FFA+      G  +I     +G    V+   D                            
Sbjct: 17  FFALTTKRNSGARYIPDLYDRGVRNFVITEEDFKEVENGELRVESSMQHDGAQPTLNSQL 76

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            ++    V + L AL KLA   R + K  +I ITGS GKT  KE L   LS  +      
Sbjct: 77  STLNFLIVPNPLKALQKLAETHRDKFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSP 136

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            SYN+ IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF
Sbjct: 137 RSYNSQIGVPLSVWQLSEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENF 196

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             ++E    K  +F+  +           +    L +   A  + T      S+    + 
Sbjct: 197 FSLQEKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSRTDIERP 249

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
               + +++    V             I +    ++   L  ++     +  A +     
Sbjct: 250 LYISRVTKKEDHTVISYRYLEMDNTFCIPFIDDASIENALNCLAACLYLMTPADQITERM 309

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              E    R      +    LI++SYN++ AS+  A+  L + S     +R  +L D+ E
Sbjct: 310 ARLEPIAMRLEVKEGKNNCVLINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILE 369

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQS 439
            G+ + + +  +A+++    I+ +   G  + +        +  ++    + L    I  
Sbjct: 370 TGQSTATLYRRVAQLVQSKGINKLIGVGQEISSCSARFNDDLERYFFPNTEALLASNILK 429

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
           SL   +V++VK S    F  +   L 
Sbjct: 430 SLHS-EVILVKGSRVFNFDLVSEALE 454


>gi|126662547|ref|ZP_01733546.1| alanine racemase [Flavobacteria bacterium BAL38]
 gi|126625926|gb|EAZ96615.1| alanine racemase [Flavobacteria bacterium BAL38]
          Length = 780

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 156/428 (36%), Gaps = 19/428 (4%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
              FFAIKG ++D H +I   + KG    VV    +            V++ L AL + A
Sbjct: 6   NTLFFAIKGQNHDAHLYIEELISKGVRYFVVE--YIPEHLYEKANFIIVENSLKALQQTA 63

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
           +  R +     + ITGS GKT  KE L   LS          SYN+ +GVPL++  +   
Sbjct: 64  IGYRKKFDFPFVGITGSNGKTIVKEWLNFLLSPNHLIVRNPKSYNSQVGVPLSVLGVEGI 123

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            DFG+FE G+S   E+  L  ++ P   ++T I  AH   F   E     K ++FE    
Sbjct: 124 YDFGLFETGISLPNEMFQLEKIIAPKYGILTNIGAAHDEGFPNREAKIKEKIKLFENCTD 183

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                    +        K                 +D          +++         
Sbjct: 184 IFLEKNESIEVLLSNKIQKH------------TWSFSDETAHLLVTQKKENNTTQLTFKN 231

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S       + +  A ++   +  V+ +    +                 R +        
Sbjct: 232 STTSFSVIVPFSDANSIENAITCVNFMLFLNEDISFIQKRVGELYPVELRLQAKKGINNC 291

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID+SY+ +  S+K A+  L Q   H +     +L D+   G  S++ +  +  +LS  
Sbjct: 292 LVIDDSYSLDYPSLKIALDFLEQQKLHDKK--TIILSDIFNSGIASETLYNQVKNLLSKN 349

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  +   G     +   L    +V    T         +     + ++VK S S  F+ 
Sbjct: 350 KIGRIITIGE---IINKHLKDLPNVISFATTQEFLQQFNTQSFQNETILVKGSRSFNFHE 406

Query: 460 LINLLLEE 467
           ++ LL E+
Sbjct: 407 IVVLLEEK 414


>gi|153953809|ref|YP_001394574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium kluyveri DSM 555]
 gi|219854425|ref|YP_002471547.1| hypothetical protein CKR_1082 [Clostridium kluyveri NBRC 12016]
 gi|146346690|gb|EDK33226.1| MurE [Clostridium kluyveri DSM 555]
 gi|219568149|dbj|BAH06133.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 485

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 93/499 (18%), Positives = 165/499 (33%), Gaps = 55/499 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    I       +  I  DSR +   + F  I G   DGH +I  A + G
Sbjct: 1   MNLKDVLRGIDYKIIKGKNNLNIGEIQYDSRKVKTGDLFVCIAGYVTDGHKYIESAFKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V++  +          V  V D   AL  ++            II ITG+ GKTT+
Sbjct: 61  AAAIVLSKKVDFIP---DCTVIEVKDTRKALALMSSNYYDNPAEDMKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L +       +G+ +N+IG                  L +  VD       + 
Sbjct: 118 TFMVKSILETAGYKVGVVGTISNYIGNKKIPSHRTTPESLELQKLFKEMVDDGVDYCVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S         + V    A+ T +   HL      EE   +K  +F+    +     +  
Sbjct: 178 ASSHSLYLDRVYGVEFCQALFTNLTRDHLDFHKTFEEYYKSKIILFKNTVNSVINIDDKY 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    + +        ++   KNAD      K  S      +  +G +  +  +  
Sbjct: 238 G-------ERVYEDAKGKKLTYAIDKNADLMADNLKIHSRGVNFNISYEGNTKHINLNIP 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L + G+      D++T  K L       GR +    + N G+  ++D ++  
Sbjct: 291 GKYNVMNALGSAGVCLAEGIDLNTVKKGLEDMPSVPGRCEIVTKSYNLGYEVVVDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +        ++L       +G+ I+V G     G    S    +   +         ++ 
Sbjct: 351 DGLE-----NILKCAREFTKGKLISVFG----CGGDRDSTKRPIMGNIGTKFSDFAVVTS 401

Query: 408 ----GFH-VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------- 451
               G   +  +KD L   +  +    E               GDVVV+  K        
Sbjct: 402 DNPRGEEPMAIIKDILTGIKKNNYIVIENRKEAIKKAMEMAETGDVVVIAGKGHEDYQIL 461

Query: 452 -SNSCGFY--RLINLLLEE 467
              +  F    ++  ++EE
Sbjct: 462 KDRTIHFDEREIVAEIIEE 480


>gi|332300681|ref|YP_004442602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177744|gb|AEE13434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanyl ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 458

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 122/446 (27%), Positives = 208/446 (46%), Gaps = 16/446 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLS 82
           +GI  D+R + P   F +++G H+DG+ F + A+++G    +V+      ++  S   L 
Sbjct: 18  DGICTDTRHLRPDSLFVSLRGAHFDGNRFAVDALKQGCKYALVDDLSYIDEVDESDADLR 77

Query: 83  IPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +    D    AL++LA+  R +S+AT IAITG+ GKTTTKE++   LS+  + +A  G
Sbjct: 78  ERLIYYRDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELVAAVLSAKYRVHATQG 137

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +YNN IGVPLTL ++  +  F I ELG SH+G+I  L  L +P   +IT +  AHLS F 
Sbjct: 138 NYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQYGIITNVGRAHLSGFG 197

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E +  AK+E++  L +         +   + L +  + L           +     L 
Sbjct: 198 TPEGVIKAKSELYAYLREHSGQAFCNGED--KTLISNLNGLPTVYYNGTTSPRVTGAVLP 255

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
             +    +     Q  G+S ++    +G +   N+L  + +      D  T  +A++ + 
Sbjct: 256 TDESGLLKIEWCDQETGESYQLATKLVGDYNLNNILAAITVGLHFGLDPKTINEAVTNYQ 315

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P     +            +I + YNANP+SM+ A+S    +   G  R   +LGDM E+
Sbjct: 316 P--RNERSQVLPPTAQGNRVILDCYNANPSSMEVALSSYFTMDCQGLNRM-LILGDMNEL 372

Query: 382 GELSQSFHIDLAEVLSLYNISH----VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           G+ ++S HI +   +  Y + +     +  G +  AL  A   S H  +  +   L  + 
Sbjct: 373 GDAAESEHITVIRQIQSYLLRYPKMVTYFCGPNFFAL-QARYGSEHFIFFPSATALKQYF 431

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINL 463
                    +++K SNS     +  L
Sbjct: 432 TRHQPQHSFILIKGSNSHHLSSIAEL 457


>gi|29840626|ref|NP_829732.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
 gi|29834976|gb|AAP05610.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila caviae GPIC]
          Length = 448

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 111/437 (25%), Positives = 190/437 (43%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDSR + P + FFA+ G   DGH F+ HA Q GA   VV+ D      S  + +
Sbjct: 25  KISGVAIDSRQVRPGDLFFALSGQCTDGHRFLKHAAQAGAVAAVVSKDYCGD--SFGLEL 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+D   AL +         + TI+ ITGS+GKTTTK      LSS+ K YA   SYN+
Sbjct: 83  IIVNDPTEALKEAGENQSHLFQGTIVGITGSIGKTTTKVFANTFLSSVYKVYASPKSYNS 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL+L     + DF I E+G+S  G ++ L  +V P +AVIT +     +     + 
Sbjct: 143 QLTVPLSLLMADGNEDFIILEMGVSEPGNMKDLLSIVEPEVAVITNV-VDQHAMNFSDKG 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           I     E    L+ +    L  D  ++     ++ +        F  + + +     +K 
Sbjct: 202 IQGIAEEKGRILQNSRVQLLPKDSPWYPHFIKQASSSEK-----FSFAFHNETADFYYKA 256

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S +    +G     +        +  ++       +             +  P   
Sbjct: 257 IRKDSVIISTPEGDIDFAISFPYQPAYSNLLISLSLAWLLEVPVDRIVHSCCDLQLPPMR 316

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
             +  R  +      +I+++YNA P +M AA+  +    P   G+ I +LG M E+G  S
Sbjct: 317 FEQSMRNGIQ-----VINDAYNACPEAMIAALDAIPH--PSESGKIILILGHMAELGNYS 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A+   L   S ++  G   L ++  L   S  V +  +  G+   ++  +  G
Sbjct: 370 EEGHTIVAKKA-LSKASIIFFIGEKWLPIQHVLNYGSCEVSFHPSAQGIEEILKKVVQQG 428

Query: 445 DVVVVKSSNSCGFYRLI 461
           D+V++K S S     L+
Sbjct: 429 DIVLLKGSRSLALESLL 445


>gi|309802507|ref|ZP_07696613.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220907|gb|EFO77213.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bifidobacterium dentium JCVIHMP022]
          Length = 417

 Score =  170 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 176/392 (44%), Gaps = 19/392 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI----VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P+    ++ QA+ G  +                 DSR +     F AI G   DGHDF
Sbjct: 7   MMPMG-LAEIEQAVHGRLVAAEGIASNGAMATSACSDSRQVREGSVFVAIAGERVDGHDF 65

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SKATII 111
           +     +GA   +V+ ++        +P   VDD + AL +LA     R     S  T+I
Sbjct: 66  VSKVGAQGAVAALVDHEVA----DAGVPQIVVDDTVRALGELAKHNLERRRAIGSPFTVI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGSVGKTTTK+++   LS++ +T A +GS+NN IG+PLT  ++     F + E+G +H
Sbjct: 122 GITGSVGKTTTKDLMASLLSAMGETVAPVGSFNNEIGLPLTALKVNAGTRFLVAEMGANH 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI  LT LV P IAV+  +  AHL  F   E IA AK+EI +GL   G   LN +D  
Sbjct: 182 VGEIANLTSLVPPDIAVVLKVGVAHLGEFGSAERIAQAKSEIVKGLVPGGVTVLNANDEH 241

Query: 232 FELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +   +    +           +    +  +  +    S+     +G+  +V     G
Sbjct: 242 VAAMSGIAPGEVLWFGLPQRRTPDRMVAAENVRCDELDHPSFELRDAEGECAKVNLGICG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNA 348
            H   N L    +   L   +D     L+                  +  FTLID+S+NA
Sbjct: 302 MHNVMNALAAATVAHRLGMPLDRIAAGLADVKRISPHRMAVSAIVKPEARFTLIDDSFNA 361

Query: 349 NPASMKAAISVLSQISPHGEGRRI--AVLGDM 378
           NP SMKA +  L +   + E +    AVLG M
Sbjct: 362 NPDSMKAGLDGLIRWHANDERQPFRIAVLGAM 393


>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 813

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 91/467 (19%), Positives = 171/467 (36%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           ++T  ++   I+         +  ++ +  DSR I       FFA  G   DGH +I  A
Sbjct: 1   MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGIFFAFTG-RQDGHLYIQDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    ++  D    +      +  V +    L  LA   R R +  +I ITGS GKT
Sbjct: 60  YNKGVRNFILEKDTEQEVQMPDANILWVANSWTTLQSLAQHNRSRFQGPVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   +S   K Y    SYN+ +GV L+L  +    +  I E G+SH+GE+  L  
Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+T I  AH   F+   E    K  +F+  E                      
Sbjct: 180 MIKPTFGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAETLIYP---------AKYLEAVQ 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S+G+ ++   ++   ++  +         G     +        A      +
Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGQTYVTLYYGGKTFGISVPFTDSAAME--NAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+++                      R      +   ++ID+SY+ +  S++ A+  L
Sbjct: 289 TCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +Q   H     I +L D+  +    +     L  +++  N++ + L G  +    + L  
Sbjct: 349 NQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL-- 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +      +       ++        +++K +    F  +  LL+ +
Sbjct: 405 GVPFQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451


>gi|227540139|ref|ZP_03970188.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227240000|gb|EEI90015.1| bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 813

 Score =  170 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 92/467 (19%), Positives = 172/467 (36%), Gaps = 19/467 (4%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHA 60
           ++T  ++   I+         +  ++ +  DSR I       FFA  G   DGH +I  A
Sbjct: 1   MYTISEIQDIIKPRRSYLADTKVSIHYLLYDSRKIAHEKLGVFFAFTG-RQDGHLYIQDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             KG    V+  D    +      +  V +   AL  LA   R + +  +I ITGS GKT
Sbjct: 60  YNKGVRNFVLEKDAEQEVQMPDANILWVANSWTALQSLAKHNRSQFQGPVIGITGSNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
             KE L   +S   K Y    SYN+ +GV L+L  +    +  I E G+SH+GE+  L  
Sbjct: 120 IVKEWLFQLMSPEYKIYRSPKSYNSQLGVALSLWDLSNQYNLAIIEAGISHVGEMDRLEA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +++P   V+T I  AH   F+   E    K  +F+  E                      
Sbjct: 180 MIKPTYGVLTNIGIAHQQGFASKLEKTEEKLRLFKDAETLIYP---------AKYLEAVQ 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   S+G+ ++   ++   ++  +         G     +        A      +
Sbjct: 231 IPYKPRKLSWGEEEDNQLEVYSIRKPEDGETYVTLYYGGKTFGISVPFTDSAAME--NAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+++                      R      +   ++ID+SY+ +  S++ A+  L
Sbjct: 289 TCVAVMLRFGYDTALIAERIRNLLPVEMRLELKNGKNNTSVIDDSYSNDLVSLQIALDFL 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +Q   H     I +L D+  +    +     L  +++  N++ + L G  +    + L  
Sbjct: 349 NQQHQHTNS--ILILSDIPGVTLTDEKNLNKLKRLVADRNLTQLILIGPVLRQYAEQL-- 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +      +       ++        +++K +    F  +  LL+ +
Sbjct: 405 GVPSQCYASTADFIANLKDIEFRDATILLKGARDFHFEDISKLLVAK 451


>gi|296133262|ref|YP_003640509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           sp. JR]
 gi|296031840|gb|ADG82608.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Thermincola
           potens JR]
          Length = 473

 Score =  170 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 102/474 (21%), Positives = 183/474 (38%), Gaps = 25/474 (5%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-----PHYDGHDFIL 58
           L     L +   G      PQ  + GI    +++ P + +F +KG      +      IL
Sbjct: 2   LDNVQTLCKVTNGVLRQGDPQQKITGIMSRCKAVKPGQVYFDVKGGPGSDEN------IL 55

Query: 59  HAVQKGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            A+ KGA  +V++         +  I V  V  V  A        R +    ++ +TG+ 
Sbjct: 56  VALDKGAVALVISKHKKKLPFNNHKISVIAVPKVWDAFWDCVSYHRDQFNIPVVGVTGTS 115

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTTKEM+                  N    VP  + R+  +    +FE+GM+  G + 
Sbjct: 116 GKTTTKEMIASIFKKKWGKILKTEQNLNLPSFVPGHIMRLTAEHKAAVFEIGMNRRGHVA 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             + +++P I +IT I  AH+      E +   K  I EG+ K G + +N DD     L 
Sbjct: 176 KQSRVIKPMIGIITNIGQAHVGMLGSKEAVIEEKGSIIEGIPKNGYLLINADDENSGKL- 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               +        FG    AD+         +    +  + GK  ++     G H   N 
Sbjct: 235 --DLSSFQGKTLRFGIKNKADYVAEDIATGLDFVSFKTVIYGKEEQIRVPISGKHNVYNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +   ++L  +V    + L+ F   + R    +         LI+++YNANP S+ A 
Sbjct: 293 LAAIAASTLLNIEVKYIKQGLAGFRRPKLRL---QLVKGINDSLLINDTYNANPDSVIAG 349

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           + VL +++   +   IAVLG+M E G  +   H  +   +    I ++   G     +  
Sbjct: 350 LEVLKELA--KDRTSIAVLGNMLEQGVFTNEAHQRVGRRVQELGIDYLITIGKLARQIAV 407

Query: 417 ALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +       +   +       +++  +    V + K S +    +++  L +
Sbjct: 408 GARKHGMPEEKIKSFDQRYEGSFYLKKHMPHRAVCLFKGSRAVYLDKMVEYLKD 461


>gi|323706125|ref|ZP_08117694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534569|gb|EGB24351.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 488

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 171/475 (36%), Gaps = 49/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +   ++       V GI  DSR+      F AIKG  +DG D+I  AV++G
Sbjct: 1   MRLVDILKDVNYTTVKGNIDVDVKGICYDSRNSKEGSLFVAIKGFKFDGADYINDAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +VV  ++        I V  V++   +L K+A         +  +I +TG+ GKT+ 
Sbjct: 61  AVAIVVEREVS---IDKDITVIKVENARKSLAKIASNYYGDPSKQLFMIGVTGTNGKTSV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L S       IG+ +N IG                    R+ VD       + 
Sbjct: 118 TYMIKSILESQNNKVGLIGTIHNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S            +  IAV T +   HL     ++E A+AKA++F   +    I ++ D
Sbjct: 178 VSSHSLALNRVDECKFDIAVFTNLTQDHLDFHKTMDEYANAKAKLFRMAKTACVINIDDD 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            S +              + ++G    A    +  K   + +   VQ++    E+     
Sbjct: 238 YSSY------MIENSNAKVVTYGIKDYAYIMAKDIKNDIKGAKFTVQIEDIKSEIALKIP 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  + +  IL   + +   AL      + +G+     L+  +  +ID ++  
Sbjct: 292 GLFSVYNSLAAISVAFILGIPLQSVKMALKD---VKIKGRFEVLDLDVPYNVVIDYAHTP 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        +++     +  G++I + G     G             ++      V ++ 
Sbjct: 349 DGLE-----NLMKAFGEYNTGKKILLFG----CGGDRDKGKRPKMGEVAGKYADFVIITS 399

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +++ +          E       +  S   D DVV++  K 
Sbjct: 400 DNPRSEEPIKIIQEIEEGIKNTKCPYTIIEDRKEAIKYALSIAKDNDVVILAGKG 454


>gi|226323560|ref|ZP_03799078.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
 gi|225208244|gb|EEG90598.1| hypothetical protein COPCOM_01335 [Coprococcus comes ATCC 27758]
          Length = 256

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  ++  A  G   G     +  + G++IDSR  AP   F  +KG   DGH FI   ++
Sbjct: 4   MTLKNITAACHGTFHGDSSFLEKEITGVAIDSRKAAPGFLFVPLKGARVDGHTFIPQVME 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA   +   D      SL+ P   V+    AL  +A   R++    ++ ITGSVGKT+T
Sbjct: 64  QGALATLTEED----PSSLTCPCIHVESCEKALRDIAAFYRMQLDIKVVGITGSVGKTST 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KE +   LS         G++NN IG+PLT+  +  + +  + E+G+ H GE+  L  + 
Sbjct: 120 KETIASVLSRKYNVLKTEGNFNNGIGLPLTIFNLTEEHEVAVLEMGIDHFGEMHELASIS 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +P I VIT I  AH+ N    + I  AK E+F+ L    ++ LN DD     +  
Sbjct: 180 QPDICVITNIGLAHMENLGSRDGILKAKTEVFDHLRPNASVILNGDDDKLSTVAE 234


>gi|300854243|ref|YP_003779227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
 gi|300434358|gb|ADK14125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium ljungdahlii DSM 13528]
          Length = 482

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 156/473 (32%), Gaps = 45/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++  +    +       +  I  DSR +   + F  IKG   DGH +I  A + G
Sbjct: 1   MKLKKVMNGLTYEVVKGNDDLNIGEIQYDSREVKSGDVFVCIKGYVTDGHKYIDKAYKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V++ ++          V  V D   AL  ++         K  II ITG+ GKTT+
Sbjct: 61  AAAIVISEEVE---NVPDCTVIKVKDTRKALAIISSNYYDNPSKKMKIIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L +       +G+  N+IG               +       + E      + 
Sbjct: 118 TFMMKSILETAGYKVGLVGTIANYIGEKKIPSHRTTPESLELQKLFKQMVDEGVQYCVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + VR   A+ T +   HL      E    AK  +F+    +     +  
Sbjct: 178 VSSHSLYLDRAYGVRFSEAIFTNLTRDHLDFHKTFENYYKAKLILFKNTINSVINIDDKY 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K +   + T  ++  +K AD +       S  +   +  +G++  +  +  
Sbjct: 238 GD-------KVYEDALGTKITYAINKEADLKANDLNIHSRGANFNITYRGQTAHINLNIP 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G        ++   K L   +   GR +      N G+  ++D ++  
Sbjct: 291 GKYNVMNALGSIGACLCEGISLEVVKKGLESMNAVPGRCEIVTKGYNLGYEVIVDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +        ++L        GR IAV G     G    +    +   +         ++ 
Sbjct: 351 DGLE-----NILKTAREFTTGRLIAVFG----CGGDRDNTKRPIMGKIGTELSDFAVITS 401

Query: 408 ----GFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               G    A+ D +   +        E               GDV+VV  K 
Sbjct: 402 DNPRGEEPRAIIDEIVNGVEKDDYKVVENRKEAIKEAIHMAQKGDVIVVAGKG 454


>gi|66769814|ref|YP_244576.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|66575146|gb|AAY50556.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 437

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 110/420 (26%), Positives = 185/420 (44%), Gaps = 20/420 (4%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +     G   G      ++ +  D+R++A    + A++G  +DGHDF   AV +GA  ++
Sbjct: 2   IAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADAVARGASGLL 59

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT+ K +L   
Sbjct: 60  VDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKTSVKALLLAI 115

Query: 130 LSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L+          YA  G+ NN IG+PL +   P D D  ++E+G    G+I +LT + RP
Sbjct: 116 LAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDIAYLTDIARP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    + +  A  +
Sbjct: 176 DVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWFEQQLLAQPL 235

Query: 245 K--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           +   +  +G   +A+   R+ +  +  +   +        VV    G H   N L   G+
Sbjct: 236 QGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNVLNALAATGL 295

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  +      L+      GR   +  A       LID+SYNANP S+ AAI  L+ 
Sbjct: 296 ALGAGIALPIIAAGLAQATQVAGRQIAHTLATG---AVLIDDSYNANPGSLDAAIDALAA 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G    VLGDM E+G  + + H           ++ ++  G    A + +   ++
Sbjct: 353 AP----GEGWLVLGDMRELGPEAPALHAAAGPPAGNRKLARLYALGALRPAAQRSATAAV 408


>gi|325282928|ref|YP_004255469.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
 gi|324314737|gb|ADY25852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Deinococcus
           proteolyticus MRP]
          Length = 438

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/449 (23%), Positives = 185/449 (41%), Gaps = 55/449 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR      AF A+ G    G+ FI  A+++GA  V+ +    AS    ++    V 
Sbjct: 24  LTWDSRQADADTAFVALPGERDHGNRFIEAALERGAPFVLTDLPGAASRLPRTV---EVP 80

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D L AL   A   R ++   ++ +TGSVGKTTTK  +  AL +          YN    +
Sbjct: 81  DSLAALTAWAQQERAKNPL-VVGVTGSVGKTTTKSYVAAALDAHYM-----PVYNTIPAI 134

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L          + E+G+  +GE+  L  LVRP + V+T+I  AHL   S +E IA  
Sbjct: 135 ACFLTEFGSSERPLVVEMGIDRVGEMDRLISLVRPDVGVLTSIGAAHLEGLSSLEVIAQ- 193

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                                  ++L +    +G +    F + +   F   +       
Sbjct: 194 --------------------EKGKILHSPRALVGNQARVWFPEQEIYGFSTPELPVQHSG 233

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             + V  QG         +    A  +     ++ +  A+      A ++   ++ +   
Sbjct: 234 QDLRVNEQGADFTYRGQTVHLPNAAQVQAEAAVLGLYLAETYGVPLAAAIQRVEQVQVPS 293

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  ++ G +T+ID++YNA+P +++AA+S L        GRRI+VLG M E+G  +   H
Sbjct: 294 GRYQIHSGRYTVIDDAYNASPLAVQAALSALQNFR----GRRISVLGTMLELGPTAPELH 349

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++            +  G +   L        H H   T+  L   +++ + DGDV++V
Sbjct: 350 AEVGRSACES-ADLCFGVGPYAELL------GHHAHR--TVPELTAALKAEVQDGDVILV 400

Query: 450 KSSNSC------------GFYRLINLLLE 466
           K+S               G   +++ LL+
Sbjct: 401 KASRGISMTPEQRAQEGVGLETVVSELLK 429


>gi|317124644|ref|YP_004098756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588732|gb|ADU48029.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Intrasporangium calvum DSM 43043]
          Length = 470

 Score =  168 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 120/468 (25%), Positives = 185/468 (39%), Gaps = 25/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M PL    ++     G   G            ++ DSR   P   + A  G   DGHD+ 
Sbjct: 1   MIPLA-LTEIRDLTHGEVHGCDDPGSVVVDGVVTTDSRDCVPGSLYVARLGEFADGHDYA 59

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGS 116
             AV  GA  V+ +  +        +    VDDV  A  ++A     R  +  I+ ITGS
Sbjct: 60  PAAVAAGAVAVLGSRPVE------GVATVVVDDVQTAFGQVARGVVDRAPELRIVGITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+TK++L   LS+  +T A + S N  IGVPLT+ R+     F + E+G   +G I 
Sbjct: 114 SGKTSTKDLLAAVLSTAGETVAPVNSLNGEIGVPLTVCRVTPTTRFLVAEMGARGIGHID 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +LT +  P +A++  +  AH+  F     IA+AK+E+   +   G   LN DD     + 
Sbjct: 174 YLTRIAPPDVAIVLNVGTAHVGEFGSRANIAAAKSELPRAVRPGGLSILNADDPLVAAMA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               +       S      A+  +       E       L                    
Sbjct: 234 GGLASRVQLVGQSPEAEVRAEATILD-----ELGRAAYDLVTPRGRARVSLRLSGAHHVG 288

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                  + L   +  A  A ++         R           +++++YNANP SM+AA
Sbjct: 289 NSLAVAAAALELGLPLAQVAAALSGAVPASRWRMEITERPDGVVIVNDAYNANPDSMRAA 348

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L+  +    G R AVLG+M E+G   +  H  +    +   I HV   G     + D
Sbjct: 349 LDALA--AIATTGERWAVLGEMLELGSDREREHAAIGSYAAGLGIDHVVAVGDGAR-VYD 405

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A        +   +D     + S L  GDVV++KSS   G   L + L
Sbjct: 406 APD------WVPDVDAAHDHLASRLRPGDVVLLKSSRDSGLRWLGDRL 447


>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
 gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
          Length = 845

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 121/468 (25%), Positives = 201/468 (42%), Gaps = 19/468 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  DLL A      G          S DSR  AP E F A++ P  DGHD+I  A+  
Sbjct: 1   MITLDDLLAA-GARLHGPAHATSFTDWSYDSRLTAPGECFVALRTPRADGHDYIPAAIAA 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  ++ +        S    V   DD    L + A A     + T++ ITGSVGKTT +
Sbjct: 60  GATGILCS---WPPADSAGTTVLLCDDPQTTLLRWASARLAAVQPTVVDITGSVGKTTAR 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L+    T+    S+N+ +G+P+ +AR+     F + ELG  H GEI  L     
Sbjct: 117 RAAAAVLARRAATFQSRRSFNSFLGLPIAIARLEDQHRFAVLELGSDHRGEIARLATFFP 176

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T +  AHL +F  +E IA+ K ++   L   G   +N D      L  ++ A  
Sbjct: 177 PKIALVTAVEAAHLRSFGSLEAIAAEKGDLLAALPPKGVAIINGDSPLARALMGRTKA-- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++G+ ++ D   R  +   + + + ++  G  ++V    IG       L  + + 
Sbjct: 235 --HTITYGQGRSCDLSGRGLRYGLDGTLLRLRWCGTEVDVHTPLIGIPGLYAALAGVAVG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+   + AL    P  GR +            L+D+S++A P +  AA+  L+ +
Sbjct: 293 LACGMDLVDCVAALPHIVPVAGRLRPLPALGGAA---LLDDSFSAAPPAALAALETLAAL 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFH---VLALKDALP 419
             H    RIAV+G + ++   S+  F+ +L    +      + L G            + 
Sbjct: 350 PAHR---RIAVVGALSDLPVGSEESFYRELGTRAASST-DLLILKGDWGVVTERAARQIN 405

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +I V   +T +     +   L  GD+V+VK        R+I  L+++
Sbjct: 406 PNIAVQVVDTNEAALAALPPDLGPGDLVLVKGGAEARMERVIARLVDD 453


>gi|301165431|emb|CBW25002.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacteriovorax marinus SJ]
          Length = 455

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 102/445 (22%), Positives = 168/445 (37%), Gaps = 26/445 (5%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV-------VNTDMVASIGSLS 82
           +S DSR+ + +  F  + G ++DG +FI   ++KG   +V       +      S     
Sbjct: 23  LSTDSRTYSGEGLFICLCGENFDGFNFIEPVLEKGCKNIVFRNNDENLERMNALSEKFQD 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +   GVD  L  L  LA     + K     +  ITGS GKTTTKEML   LSS       
Sbjct: 83  VTFIGVDSPLATLQSLANKRIKQFKNDGGFVFGITGSNGKTTTKEMLASLLSSAYGKEVH 142

Query: 140 --IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              G+ NNHIGVPLT+   P    + I E+G +H+GEI  L  +  P   +I+++  AH+
Sbjct: 143 ATKGNLNNHIGVPLTILSAPTCCKYMIVEMGANHVGEISDLCEIAMPEFGIISSVGAAHI 202

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F GIE I   K  +++ + +  T    +  +  +   ++          S  +     
Sbjct: 203 GLFGGIENIFKEKKSLYDYVLRFKTDRSKFIVNNEDKYLSQI---------SPSEVLIKF 253

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                     ++  + +         +          +    L  V+I     DT I A 
Sbjct: 254 GDSSDVDVTYDEGKIVINNVNIENVNILEKYNLSNLASAY--LLAVNIFPDKKDTFISAA 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S +         +     +  F     +   +  S   +     +         + VLGD
Sbjct: 312 SEYRIPSLNRSEWIERNGKQIFLDAYNANPTSMESSLNSFVENMKKKGIPLDDVLFVLGD 371

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           M E+G+ ++  H  +A  L      +V   G +       LP  I     E  + L L  
Sbjct: 372 MNELGDYAKDEHERIARQLDGLGAKNVIFVGNYSKYYMQGLPSGI---MFEKKEDLVLRW 428

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLIN 462
                +   + +K+S S     LI+
Sbjct: 429 SELSKERSALFIKASRSLQLESLID 453


>gi|20808076|ref|NP_623247.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516658|gb|AAM24851.1| UDP-N-acetylmuramyl tripeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 492

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 177/477 (37%), Gaps = 50/477 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P+    DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A++
Sbjct: 9   PIMRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIK 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            GA  VV + D+    G   + V  V+D   A+ K+A         K T+I ITG+ GKT
Sbjct: 68  NGAVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166
           +   ML   L         +G+  N IG                  L  + V+       
Sbjct: 125 SVTYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVV 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S               IAV T ++  HL     +EE A  K+++F+  +K   I ++
Sbjct: 185 MEVSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVINID 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    ++ K        +VQ+Q K  E+   
Sbjct: 245 ------DKYSSMMIESSKGKVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLK 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++
Sbjct: 299 IPGLFSVYNALAAITVADFLGIPLRSVREALSH---VTVKGRFEPVETGRDFYVFIDYAH 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I V G     G         L   ++        L
Sbjct: 356 TPDG-----IRNIMEALKEYEAGRKILVFGA----GGDRDKSKRPLMGEVAGKYADFCIL 406

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  S+    DV+++  K 
Sbjct: 407 TSDNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 463


>gi|99036016|ref|ZP_01315055.1| hypothetical protein Wendoof_01000093 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 318

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/236 (37%), Positives = 137/236 (58%), Gaps = 7/236 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+          S P+  V D L AL+ +A          A +IA+TGSVGKTTT
Sbjct: 64  AIAAIVSEGKYK-----SFPLIIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+ML   LS    ++A  G+ NN+IG+PLT+ + P +  + I E+GM+  GEI+ L+ + 
Sbjct: 119 KDMLHTVLSQYGVSHANEGNLNNNIGLPLTILKAPKNCQYLILEMGMNKAGEIKELSKIS 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            P+IAVIT I PAH  NFS + ++A AK EI  G++  GT+ L+ D+ +++ L + 
Sbjct: 179 NPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNGTLVLSRDNKYYDYLSSH 234


>gi|168071096|ref|XP_001787052.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162659835|gb|EDQ48134.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 345

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 154/345 (44%), Gaps = 9/345 (2%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  + G+  DSR I     F  + G  +DGH +    ++ GAG  +   D   +      
Sbjct: 5   ELPIQGVFTDSRQIKQGSLFVPLVGERFDGHAYAESVLKDGAGATLWQRDRGEAPAGA-- 62

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  VDD L AL  LA A        ++ ITGS GKTTTK+M+   LS+  K +   G++
Sbjct: 63  -VIVVDDTLAALQTLAEAYLAEVGCRVVGITGSNGKTTTKDMVYTLLSTTYKVHKTGGNF 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NNHIG+PLT+  MP D +  + E+GMS   EI  L+ + RP +AVIT I  AHL      
Sbjct: 122 NNHIGLPLTILEMPADTEIAVLEMGMSGRHEIERLSQIARPDVAVITNIGEAHLLQLGSR 181

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLR 261
            EIA AK EI  G++  G +  + D+    ++   A++        ++FG   + D    
Sbjct: 182 HEIARAKVEIISGMKPGGLLIYHGDEPLIPMVLGEAETVKPEGLGTFTFGLDHSNDDYPT 241

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                S+                   +      N++  L  +++      T     +   
Sbjct: 242 GMMFHSKGIIFT----SLLHPEEGLDLPLLGQHNVINCLAALAVARHFGITEENIRTGLT 297

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                G R    +     T+++++YNA+P SMKAAI  L  +  +
Sbjct: 298 GLHLTGMRIEQIVAPSGLTILNDAYNASPTSMKAAIDALHSLKGY 342


>gi|126700278|ref|YP_001089175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile 630]
 gi|123174038|sp|Q182Z8|MURE_CLOD6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115251715|emb|CAJ69550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium difficile]
          Length = 484

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A   +V  D+             V D    + K+A            +I +TG+ GKT+ 
Sbjct: 61  ASAFIVEEDVAIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             +L   L+  K     IG+     G                       +D       + 
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               + + T + P HL     +E+   AK ++F   + T    +N D
Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +      + +   Y++G    ADF  R  K  S+     +        +     
Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L        + L + +   GR +                + +A
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL       EG+ I+V G     G    +    L   +         ++ 
Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402

Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +         +  + + +  +  + H     +       S     DVV++  
Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455


>gi|255101832|ref|ZP_05330809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-63q42]
 gi|255307699|ref|ZP_05351870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile ATCC 43255]
          Length = 484

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A   +V  D+             V D    + K+A            +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             +L   L+  K     IG+     G                       +D       + 
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               + + T + P HL     +E+   AK ++F   + T    +N D
Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +      + +   Y++G    ADF  R  K  S+     +        +     
Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L        + L + +   GR +                + +A
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL       EG+ I+V G     G    +    L   +         ++ 
Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402

Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +         +  + + +  +  + H     +       S     DVV++  
Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455


>gi|309798668|ref|ZP_07692935.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
 gi|308117714|gb|EFO55123.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Streptococcus infantis SK1302]
          Length = 391

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 106/400 (26%), Positives = 174/400 (43%), Gaps = 22/400 (5%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                  P   V+DVL A   LA     ++   + A+TGS GKTTTK+ML   L++  KT
Sbjct: 3   EKEVEGQPYILVEDVLTAFQDLAAYYLQKTGVDVFAVTGSNGKTTTKDMLAHLLATTFKT 62

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           Y   G+YNN IG+P T+  MP D +  + E+G  HLG+I  L+ L  P  A++T +  AH
Sbjct: 63  YKTQGNYNNEIGLPYTVLHMPDDTEKLVLEMGQDHLGDIHLLSELAHPKTAIVTLVGEAH 122

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L+ F    EIA  K +I +G+EK G +    D    + L         K +  FG     
Sbjct: 123 LAFFKDRSEIAKGKLQIADGMEKGGVLLAPVDPIVEDYL------PTDKKVVRFGPGAEL 176

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +      +    +  +  ++      +     G + A N ++   +        +   +A
Sbjct: 177 EIT----ELTERKDSLTFKVNFLEQALDLPVTGKYNATNAMIASYVALQEGVTEEQIRQA 232

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                    R +  + A       ++ + YNANP +MK  +   S I  +  G++IAVL 
Sbjct: 233 FQNLELTRNRTEWKKAANGAD---ILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLA 289

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYS------ 427
           DM E+G+ S   H  +   ++   +  V   G  +  L     +     HV+Y       
Sbjct: 290 DMKELGDQSVQLHNQMILSITPDVLDTVIFYGEDIADLAQLASQMFPIGHVYYFKKTAEE 349

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  + +   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 350 DQFEAMVKQVKESLGAHDQILLKGSNSMNLAKLVESLENE 389


>gi|255656642|ref|ZP_05402051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-23m63]
 gi|296449902|ref|ZP_06891666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296878283|ref|ZP_06902292.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
 gi|296261172|gb|EFH08003.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP08]
 gi|296430731|gb|EFH16569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium difficile NAP07]
          Length = 484

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 157/473 (33%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  DSR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A   +V  D+             V D    + K+A            +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             +L   L+  K     IG+     G                       +D       + 
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               + + T + P HL     +E+   AK ++F   + T    +N D
Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +      + +   Y++G   NADF  R  K  S+     +        +     
Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTNADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L        + L + +   GR   +    N    ++I + Y  
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGR---FETVPNDKGISVIVD-YAH 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +    Q +   EG+ I+V G     G    +    L   +         ++ 
Sbjct: 350 TPDALENVLKTTQQFA---EGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402

Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +         +  + + +  +  + H     +       S     DVV++  
Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAISEAISMAKKDDVVIITG 455


>gi|188993029|ref|YP_001905039.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167734789|emb|CAP52999.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Xanthomonas campestris pv. campestris]
          Length = 494

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 122/499 (24%), Positives = 199/499 (39%), Gaps = 47/499 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT
Sbjct: 58  VARGASGLLVDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L+          YA  G+ NN IG+PL +   P D D  ++E+G    G+I
Sbjct: 114 SVKALLLAILAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + RP +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++   +  +G   +A+   R+ +  +  +   + +      VV    G H  
Sbjct: 234 EQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLVIPQGEAPVVLPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+      GR   +          LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQATQVAGRQIAHTLTTGA---VLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G  + + H           ++ ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ-----SSLVDGD---------------------VV 447
              A      V  +       L        S     D                      +
Sbjct: 407 AAQAFGDGGRVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTL 466

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +VK S      R++  LL 
Sbjct: 467 LVKGSRGSAMDRIVAALLA 485


>gi|21230196|ref|NP_636113.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|21111734|gb|AAM40037.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 494

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 123/499 (24%), Positives = 199/499 (39%), Gaps = 47/499 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L     +     G   G      ++ +  D+R++A    + A++G  +DGHDF   A
Sbjct: 1   MK-LTPLSLIAHFAGGELHGD--DAMIDAVGNDTRALASGSLYVALRGERFDGHDFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  ++V+      + +L +P   V +   AL ++A   +      +IA+TGS GKT
Sbjct: 58  VARGASGLLVDR----LLPALHVPQVVVANTELALARIAAGMQRDRATRVIALTGSNGKT 113

Query: 121 TTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + K +L   L+          YA  G+ NN IG+PL +   P D D  ++E+G    G+I
Sbjct: 114 SVKALLLAILAEAGRVDGITAYANPGNRNNEIGLPLAVIAAPDDADLAVYEMGAGKPGDI 173

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +LT + RP +A++  IAPAHL     +  +A  K  I+  L   G   +N DD+F    
Sbjct: 174 AYLTDIARPDVALVNNIAPAHLERMGSLLGVAQTKGAIYTALPADGVAVINADDAFGAWF 233

Query: 236 KAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + +  A  ++   +  +G   +A+   R+ +  +  +   +        VV    G H  
Sbjct: 234 EQQLLAQPLQGRRVLRYGLHASAEITARQLRLHAAGAQFVLATPQGEAPVVLPLPGRHNV 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+       +      L+      GR   +  A       LID+SYNANP S+
Sbjct: 294 LNALAATGLALGAGIALPIIAAGLAQATQVAGRQIAHTLATGA---VLIDDSYNANPGSL 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L+       G    VLGDM E+G  + + H           ++ ++  G    A
Sbjct: 351 DAAIDALAAAP----GEGWLVLGDMRELGPEAPALHAAAGRRARNAKLARLYALGALSAA 406

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQ-----SSLVDGD---------------------VV 447
              A      V  +       L        S     D                      +
Sbjct: 407 AAQAFGDGGRVFATHAALAAALQADLAAAASQTQTQDSSLMHEHTGAVARAAASVAPPTL 466

Query: 448 VVKSSNSCGFYRLINLLLE 466
           +VK S      R++  LL 
Sbjct: 467 LVKGSRGSAMDRIVAALLA 485


>gi|313609858|gb|EFR85283.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria monocytogenes FSL F2-208]
          Length = 346

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/325 (27%), Positives = 143/325 (44%), Gaps = 9/325 (2%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +++  +             + G+  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17  TVGEVVAMLDSSIHVDTFRDVVITGVCFDTRQIKSGDLFVPFVGNVRDGHEFVGQAREMG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A       ++         PV  V+D L AL +LA     + K  +IAITGS GKTTTK+
Sbjct: 77  AVATFWQKNV--PNPPTDFPVILVEDTLLALQELAAKYIQQVKPKVIAITGSNGKTTTKD 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+ + +P
Sbjct: 135 IMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLSKIAKP 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I  AH+      EEIA AK EI  G                E L    +  G 
Sbjct: 195 DIAIITNIGEAHIEYLGSREEIAKAKLEITAG----LNPSGILIYPHEETLL-LGNINGD 249

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +FGKS+ A+    + +  +E +      +   +E+    IG H   N +  +    
Sbjct: 250 FRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWE-PELEIFVPIIGEHNVFNTMAAMLAAR 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKR 329
            +  + +    AL      + R + 
Sbjct: 309 EIGIEGEKIQSALKNMERSKSRLEW 333


>gi|28211294|ref|NP_782238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
 gi|46577021|sp|Q894B7|MURE_CLOTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28203734|gb|AAO36175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium tetani E88]
          Length = 485

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 164/475 (34%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L+ ++ + +    +  +  I  DSR+I   + FFAI+G   DGH FI  A++KG
Sbjct: 1   MKLKEVLKKLEYNILNGNIEIDIENIQYDSRNIKKNDIFFAIQGYSTDGHKFIESAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V +           I    V +   AL   A         K  +I +TG+ GKTT+
Sbjct: 61  AKVIVFDKGFENENMYKDITFIKVKNSRKALAVAASNYYGNPKDKLKLIGVTGTNGKTTS 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         +G+  N+IG                  L    +   VD+ + E
Sbjct: 121 TFMIKSILEEAGFKVGLMGTILNYIGDRKIYAQRTTPESLEIHKLFKDMVDSGVDYCVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH   +  +  +   +  + T +   HL      E   ++K  +F+    +     +
Sbjct: 181 V-SSHSLYLDRVYGI-EFNEGIFTNLTQDHLDFHKTFENYYNSKLMLFKNSINSVINIDD 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +      +  +++   K +D +    +  S      V  +G   ++  H
Sbjct: 239 NYG-------ERILKEIEEKTFTYSIKKYSDLKAESVRLHSRGGEFTVDFKGNKEKINIH 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++         +    + L       GR +      N G+  ++D ++
Sbjct: 292 IPGEYNVSNALGSILACVNEGISLKVIKRGLEKLSGVPGRCEIVTMGYNLGYDVIVDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +VL       +G+ I+V G     G         +   +         L
Sbjct: 352 TPDG-----LDNVLRTARDFTKGKLISVYG----CGGDRDRAKRPIMGRIGTELSDLAIL 402

Query: 407 SGFHVL-----ALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       ++ D + + +   +    ++         +     DV+VV  K 
Sbjct: 403 TSDNPRTEEPFSIIDDIVKGVTKDNYIIVQSRREAIKKAMTIAKKDDVIVVAGKG 457


>gi|182414445|ref|YP_001819511.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
 gi|177841659|gb|ACB75911.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Opitutus
           terrae PB90-1]
          Length = 472

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 189/475 (39%), Gaps = 29/475 (6%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P ++   L     G          +   +IDSR +   + F AIK    DGH F+  A  
Sbjct: 2   PSFSPAQLASWTGGRWTAQPVSSLL-AFAIDSRQLRRGDVFVAIKSEQRDGHAFLGAAEA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +V+T   A    L++P   V D L A   +A   R   +  ++ I+GS GKT+T
Sbjct: 61  AGASAALVSTPDPA----LALPQLVVADPLRAFQAIAREHRRLFRGPVVGISGSAGKTST 116

Query: 123 KE--------MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLG 173
           K             + +   +  A  G+ NNH+GVPLTL  +      F + E G+S  G
Sbjct: 117 KNLLALLLETAAASSDAHAGQVLATEGNLNNHLGVPLTLTLLDPAVHRFAVVEAGISAPG 176

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  L  +++P +A+IT +A AH     G+  +A  KA +   +  TG        + F 
Sbjct: 177 EMAPLAEMIQPDVALITLVAAAHTEELGGLAGVAKEKAVLPAAVPPTGIAIFPKHCTEFA 236

Query: 234 LLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +    +   +    +    +            +               +      +  
Sbjct: 237 AFRELDVQQMVVERADVIRPAQPPRDKVFFTVSHRDEHTVVALAYGPPPPLTFTLRRVSD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            MAQN  + +     L    ++  + L+ + P + RG+  R         L  + YNANP
Sbjct: 297 GMAQNAALAICAALWLGVPAESIQQRLAQWQPAKLRGELRRENGRW----LYLDCYNANP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           ASM  A+     ++P  E  R+ VLG M E+G  +  +H +L   L L       + G H
Sbjct: 353 ASMTDALEAFYGMAPTAE-PRLFVLGGMEELGREAAGYHHELGRALRLRAGDQAVVIGEH 411

Query: 411 VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             A++     +      V  +E+++ + + + +       V VK S      +++
Sbjct: 412 APAVRAGALAAGTAPDQVRVAESLEPIAVQVAAWRGA---VFVKGSRRYALEKVL 463


>gi|313896087|ref|ZP_07829641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975512|gb|EFR40973.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 329

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 139/302 (46%), Gaps = 8/302 (2%)

Query: 5   WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T+ ++  A  G  +           GI+ D+R +   + F A++G  +DG DF   A++
Sbjct: 4   MTWDEIRAATGGRLLLGKMRGNDAFAGITTDTRKVQAGDLFVALRGEKFDGADFAAGALR 63

Query: 63  KGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+    V+      +      V GV D L A  ++A A R++    ++A+TGS G
Sbjct: 64  AGAVAVMLPEPVSDAHRKELDRTPGAVIGVTDTLAAYQQIAHAWRMKFDIPVVAVTGSNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKE+   ALS          +YNN IG+PLTL  M  +    + E+GM   G+I  L
Sbjct: 124 KTTTKELTAAALSGRGAVCRTAANYNNEIGLPLTLLGMTGEDTAAVVEMGMRGRGQIAAL 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +  P + ++T +   H+     IE IA AK+E+ E +   G + LN DD+    ++A+
Sbjct: 184 AAIAAPTVGIVTNVGETHMELLGSIENIARAKSELVEAIAPGGIVILNADDARVAAMRAQ 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     I ++G    AD + +  +    ++   V   G+  +     +G H   N   
Sbjct: 244 --AADGVRILTYGIRAKADIRAQALRSACNETRFMVTYGGERHDYAVPLLGRHNVYNTRG 301

Query: 299 TL 300
             
Sbjct: 302 AC 303


>gi|253682637|ref|ZP_04863434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
 gi|253562349|gb|EES91801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium botulinum D str. 1873]
          Length = 483

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/475 (16%), Positives = 152/475 (32%), Gaps = 48/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ ++   I       VN I  DSR +   + F AI+G + DGH FI  A++ G
Sbjct: 1   MKLIQILKGLEYKKISGTLDLEVNKIEYDSRKVLKGDVFVAIEGFNVDGHKFINKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A +++ + +      S       V++   AL  +A            +I ITG+ GKTT+
Sbjct: 61  AKVIICSKNTEFYENS---TYIKVENTRKALAIMASNFYGNPSNEIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         IG+  N IG                  +       ++++ I E
Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEKKIKAERTTPESLELQEMFKKMNDKNIEYCIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + ++    + T +   HL      E    AK  +F   + +     +
Sbjct: 178 V--SSHSLSLDRVYGLKFSQGIFTNLTQDHLDFHKTFENYYKAKLSMFHNAKNSIINIDD 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +                  T  ++   + AD         S  +  ++  +   + +   
Sbjct: 236 FYGDRMLK-----DIPKTSTKITYSTERQADLFAENIVNHSRGAEFDLIYKETMIHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L +          ++   + L       GR +      N GF  ++D ++
Sbjct: 291 IPGIYNVYNALCSAAACLEEGISIEKVKEGLENVV-VPGRCENVTKKYNLGFDVIVDYAH 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L+      +GR I+V G     G         +   +         +
Sbjct: 350 TPDGLE-----NILNTAKDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSNLSDIAII 400

Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      +  + D +      +    E                DV+VV  K 
Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYIVVENRKEAIKQAMKMAKKDDVIVVAGKG 455


>gi|188589397|ref|YP_001921591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499678|gb|ACD52814.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 484

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 179/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ ++ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDIFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++++  D+   + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDDI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L S  K    IG+  N+IG                       +   V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIREDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++   + ++      GR +R     N  +  +ID ++
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIREGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR IA+ G     G             +         +
Sbjct: 352 TPDG-----LQNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      +  ++D L      +    E              + DV+V+  K 
Sbjct: 403 TSDNPRSEEPMKIIEDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|167740316|ref|ZP_02413090.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 14]
          Length = 272

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|167920623|ref|ZP_02507714.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei BCC215]
          Length = 300

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS +P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSASPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|167817534|ref|ZP_02449214.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 91]
          Length = 289

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|167721347|ref|ZP_02404583.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 303

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|313634153|gb|EFS00813.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL N1-067]
          Length = 316

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 89/322 (27%), Positives = 141/322 (43%), Gaps = 9/322 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T  +++  +             + G+  D+R I P + F    G   DGH+F+  
Sbjct: 1   MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA       ++         PV  V+D L AL +LA+      +  +IAITGS GK
Sbjct: 61  AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+
Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IA+IT I  AH+      +EIA AK EI  G              + E L   S
Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LS 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G     +FGKS  ++    +    +E +      +   +E+    IG H   N +  
Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFH 321
           +     +  +      AL    
Sbjct: 293 MLAAREIGIEGKKIQTALKNME 314


>gi|299821554|ref|ZP_07053442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
 gi|299817219|gb|EFI84455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Listeria grayi DSM 20601]
          Length = 494

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 151/473 (31%), Gaps = 43/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL +I  +       G +  I  DSR +     F  I G   DGH F   A   GA 
Sbjct: 6   LQTLLTSIPAYRTSQDLSGEITNIEQDSRKVVSGTLFICIDGEIVDGHQFAKQAEANGAT 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++   ++      +SIPV  V D   A+  LA         K  +I +TG+ GKTT   
Sbjct: 66  AILAEKEI-----DVSIPVVYVKDSKRAMAILADRFYGSPSQKMKMIGVTGTNGKTTVTH 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMS 170
           ++   +         IG+    IG                       +  D     + +S
Sbjct: 121 LVEQIVRDAGSETGLIGTMYRKIGREILETKNTTPDSLTLQRTYHEMLAADVQTVAMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYD 228
               ++  T+     IAV T ++  HL     +EE A AK+      G            
Sbjct: 181 SHALVQGRTYGTDFDIAVFTNLSQDHLDYHKTMEEYAYAKSLLFAQLGNSYDSEKPKYAI 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + +  +        + ++G  K ADF        S  +  ++       +V    I
Sbjct: 241 INQDDPVSQRMKTATAAPVITYGIDKAADFGATDVMVTSSGTTFKLHTPDGDFDVRIKMI 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  L     L   +  AI +L       GR   +        FT+I + Y  
Sbjct: 301 GKFSIYNCLAALATSYALEIPIHQAITSLEKVQGVAGR---FEIVDAGQDFTVIVD-YAH 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P  +   +  + +           V   +   G+  +     +A++   Y    V+ S 
Sbjct: 357 TPDGLLNVLETIEEFKRSR------VFAIVGCGGDRDKGKRPQMAKIAIDYATDPVFTSD 410

Query: 409 ----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A+       LP +              +  +    GDV+++  K 
Sbjct: 411 NPRSEDPEAIIQDMLAGLPANAVYQVRTDRKEAITYAVNEAQAGDVILIAGKG 463


>gi|167847420|ref|ZP_02472928.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 297

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|167825934|ref|ZP_02457405.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
          Length = 298

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|167896009|ref|ZP_02483411.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 7894]
 gi|167912656|ref|ZP_02499747.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 289

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++    +A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEHARLATAGNFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEM 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|30316382|sp|Q8R9G2|MURE_THETN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 482

 Score =  165 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/475 (20%), Positives = 175/475 (36%), Gaps = 50/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++ H I   P   ++G+  DSR   P+  F AIKG   DG  ++  A++ G
Sbjct: 1   MRLVDLLKGVK-HEIKGNPNVDISGVCYDSRKAKPKYLFIAIKGFKTDGLLYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV + D+    G   + V  V+D   A+ K+A         K T+I ITG+ GKT+ 
Sbjct: 60  AVAVVTDRDISEYPG---VTVVLVEDARAAMAKIASNFYNNPTSKLTLIGITGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             ML   L         +G+  N IG                  L  + V+       + 
Sbjct: 117 TYMLKAILEQQNNKVGLVGTIQNMIGDRVIPTTHTTPESLDLQELFSLMVNEGVKYVVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               IAV T ++  HL     +EE A  K+++F+  +K   I ++  
Sbjct: 177 VSSHSLALHRVDSCDFDIAVFTNLSQDHLDFHESMEEYAKTKSKLFKMAKKASVINID-- 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +   +         + ++G    A    ++ K        +VQ+Q K  E+     
Sbjct: 235 ----DKYSSMMIESSKGKVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIP 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++  
Sbjct: 291 GLFSVYNALAAITVADFLGIPLRSVREALSH---VTVKGRFEPVETGRDFYVFIDYAHTP 347

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        +++  +  +  GR+I V G     G         L   ++        L+ 
Sbjct: 348 DG-----IRNIMEALKEYEAGRKILVFGA----GGDRDKSKRPLMGEVAGKYADFCILTS 398

Query: 409 FHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +         +++ + + +      E       +  S+    DV+++  K 
Sbjct: 399 DNPRSENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 453


>gi|118443333|ref|YP_878010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium novyi NT]
 gi|118133789|gb|ABK60833.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium novyi NT]
          Length = 483

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 48/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++   +    +  V+ I  DSR I+  + F AI+G + DGH FI  A+ +G
Sbjct: 1   MKVNELLKGLEYEILNGDLELEVSSIEYDSRKISENDVFVAIEGFNVDGHKFIEKAINEG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V + ++        I    V++   AL  +A            +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKEIEIK---KGITYIKVENTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L S   +   IG+ +N IG                  +       ++++ + E
Sbjct: 118 TYMIKSILESAGHSTGLIGTISNFIGNEKIKAERTTPESLELHEMFKKMKDKNIEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + +     + T +   HL      E    AK  +F+  + +     +
Sbjct: 178 V--SSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNSIINIDD 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       +         ++   K AD   +     +  +   +  + K   +   
Sbjct: 236 TYGERI-----LNDVPDSSNKITYSTEKKADLFAKDIVNHARGAEFVLCYKDKETHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   K L       GR +      + GF  +ID ++
Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESVV-VPGRCENATKDYDLGFDVIIDYAH 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR I+V G     G         +   +         +
Sbjct: 350 TPDGLE-----NILETARDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDMSDIAII 400

Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD +   +  +    E               GDV+VV  K 
Sbjct: 401 TSDNPRTEEPSQIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKQGDVIVVAGKG 455


>gi|167752890|ref|ZP_02425017.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
 gi|167659959|gb|EDS04089.1| hypothetical protein ALIPUT_01152 [Alistipes putredinis DSM 17216]
          Length = 790

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/469 (20%), Positives = 170/469 (36%), Gaps = 48/469 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFFAIKGPHYDGHDFIL 58
           M  +    ++ +   G  IG      V  +  DSR+ +  E   F A+KG ++D H FI 
Sbjct: 1   MKYM--LSEIARICGGELIG--EDLPVARVLTDSRNCSFGEEPLFVAMKGTNHDSHAFIG 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             V++     +                  V   + AL +LA   R R K  ++ ITGS G
Sbjct: 57  EMVRRDVKAFLAERKT---QLPAGCGCVVVPSAIAALQQLAAHHRTRFKGRVVGITGSNG 113

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT  KE +   + +  K +    SYN+ +GV L+L  +  D +  + E G+S  GE+  L
Sbjct: 114 KTVVKEWIAQQIPAGVKYFRSPKSYNSQLGVALSLLMIEGDEELALIEAGISCPGEMVRL 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++RP   + T+I  AH  NF+ +EE ++ K  + +G                  L  +
Sbjct: 174 ERMIRPDTVIFTSIGEAHQENFTSLEEKSAEKLVLAKGARTIIYH-------GGSSLLER 226

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                                    +       ++   +    E +  G+    A  +  
Sbjct: 227 M-----------------------IRTLYGGRQLQDAAEYPLPEQLPAGVLESGAGRVDA 263

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L                            R           LID++YN++  S+  A+ 
Sbjct: 264 QLVGAFCRVMGFPDPDFGR-----IRPVAMRLELKEGINGSLLIDDAYNSDINSLSIALD 318

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  ++         +L D+ + G      + ++A +++   +S +   G  +       
Sbjct: 319 YLHNMAA--GRPMTLILSDIEQSGVEDGVLYGEVARLVAAAGVSRLIGVGDRIRNA--GA 374

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +    +  T D L   ++   V G VV++K S    F R+ + L  +
Sbjct: 375 NFACDSAFYRTTDELLRNLRRDDVAGRVVLIKGSRDSHFERVSHALERK 423


>gi|254976257|ref|ZP_05272729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-66c26]
 gi|255093643|ref|ZP_05323121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CIP 107932]
 gi|255315392|ref|ZP_05356975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-76w55]
 gi|255518057|ref|ZP_05385733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-97b34]
 gi|255651173|ref|ZP_05398075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-37x79]
 gi|260684239|ref|YP_003215524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile CD196]
 gi|260687898|ref|YP_003219032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile R20291]
 gi|306521020|ref|ZP_07407367.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium difficile QCD-32g58]
 gi|260210402|emb|CBA64803.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile CD196]
 gi|260213915|emb|CBE05965.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Clostridium difficile R20291]
          Length = 484

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 149/473 (31%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +D++Q +   ++       +N +  +SR +     F  IKG   DGH +I  A++KG
Sbjct: 1   MKLNDIIQGLDIINVKGELNIDINNVQYNSRKVTKGTLFICIKGFVSDGHKYIKDAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A   +V  D+             V D    + K+A            +I +TG+ GKT+ 
Sbjct: 61  ASAFLVEEDVEIK----GCTFIKVKDTRKDMAKVADNFYNHPSQKFNVIGVTGTNGKTSI 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             +L   L+  K     IG+     G                       +D       + 
Sbjct: 117 TTILNEILTLNKNKVGLIGTIKIFDGEKDIVSNSTTPESIDLQYHFNNMLDNGCDYCAME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               + + T + P HL     +E+   AK ++F   + T    +N D
Sbjct: 177 VSSHSLALNRVDETDFKLGIFTNLTPDHLDFHKDLEDYRKAKEKLFF--KTTMANIINID 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +      + +   Y++G    ADF  R  K  S+     +        +     
Sbjct: 235 DEGGKKIYENIKGINV-PCYTYGVDTKADFMARDIKSDSDGVSYRLITPSYEEVIFIPVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L        + L + +   GR +                + +A
Sbjct: 294 GMFTVYNTLAVIAACYVLGIPKPIYKEGLRLSNGVSGRFETVPNDKGISVIVDYAHTPDA 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL       EG+ I+V G     G    +    L   +         ++ 
Sbjct: 354 -------LENVLKTTQQFAEGKIISVFG----CGGDRDTEKRPLMGAIGQKYSDLCIITS 402

Query: 409 FH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +         +  + + +  +  + H     +       S     DVV++  
Sbjct: 403 DNPRTEEPEAIIKDILEGIDKKKENYHVVVDREQAIAEAISMAKKDDVVIITG 455


>gi|51893869|ref|YP_076560.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51857558|dbj|BAD41716.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 496

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/472 (20%), Positives = 163/472 (34%), Gaps = 45/472 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L A+    +   P   V GI+ DSR++ P + F  I G H D H FI  A+++GA  VV
Sbjct: 1   MLSALDPVQVLEAPDVTVTGIAADSRAVRPGDLFVCIPGAHVDAHQFIPDALRRGAVAVV 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT 127
                    G  +     V D   AL+ LA            ++ +TG+ GKTTT  ++ 
Sbjct: 61  TQRPWAVPTGIGAA---VVPDARLALSALADRFYGHPSRALRMVGVTGTNGKTTTAFLVE 117

Query: 128 IALSSIKKTYACIGSYNNHIGV-------------PLTLAR-----MPVDVDFGIFELGM 169
               +  K    IG+    +G              P T+ R     +       + E+  
Sbjct: 118 AIARTAGKAMGVIGTAGMMLGREVLEGKSGYTTPEPQTIHRLLAAMLQRGAWGAVMEV-- 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +  T   R  +AV T +   HL     +E   +AKA +F GL+      +N DD
Sbjct: 176 SSHALEQRRTDHCRFDVAVFTNLTHEHLDYHGDMEGYYAAKARLFRGLQPGAAAVVNIDD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   L  +  A       ++G S+ AD +          +   +       E       
Sbjct: 236 PYGRRLAEEIPAG--VRTLTYGFSEGADIRAEDVHLTGPGARYRLITP--VGEADVEAPH 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+   +  V    A   +   A++     +G   R+        FT++ + Y   
Sbjct: 292 LFGTYNVSNAMAAVGAGLALGFSLQDAVAALGTAKGAPGRFERIDEGQDFTVVVD-YAHT 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P   +  +S +++I      R I V G     G+   S   D+  +   Y    + L+  
Sbjct: 351 PDGFEKLLSDVARIK-EPGSRVIMVFGSA---GQRDPSKRPDMGRIAGEY-CDVLVLTEE 405

Query: 410 H---------VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                        +        + +H  E               GD+V++  
Sbjct: 406 DPRTEDAMEIARQIASGVARDEVEIHLIEDRVEAIREAIRMARTGDIVLITG 457


>gi|149927250|ref|ZP_01915506.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
 gi|149823964|gb|EDM83187.1| hypothetical protein LMED105_09750 [Limnobacter sp. MED105]
          Length = 1024

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 119/476 (25%), Positives = 196/476 (41%), Gaps = 33/476 (6%)

Query: 5    WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSI-----APQEAFFAIKGPHYDGH---- 54
            W    + +   G  I   P     +GI      +      P +   A++    +G     
Sbjct: 565  WDAEQIARVTGGIWIKSPPDSWRPSGIC-----VWESGFRPNDI-VALRSESENGGLSAD 618

Query: 55   DF-----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
             F     + +AV       + +   V      +  V  V  +  A+  +   AR      
Sbjct: 619  SFKRLSPLPNAVM------ITSGTQVPHTLPTTAGVLVVKSIHQAVIFMGRHARRLFTGK 672

Query: 110  IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            ++ +TGS GKTTT  ML  A +      A  G+ N   GV   LA M    D+ I E+ +
Sbjct: 673  LVGVTGSAGKTTTVAMLKHAFNDSGHISATRGNANLPYGVAWNLASMESGTDYMILEIAI 732

Query: 170  SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               G ++    L RPH+AV+T I  AHL     IE IA  KA IF GL   G   +N D 
Sbjct: 733  ---GRMKESAVLARPHVAVVTNIGSAHLEFHKTIETIAKRKARIFWGLVDGGIAVINRDT 789

Query: 230  SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              F+L+  +++ +    I ++G+   +  +L       ++  ++V+ +            
Sbjct: 790  ECFDLILHEANKVKAVVI-TYGEHSESAVRLININDKDKEVEIQVEGRIYIFGSKVLSKH 848

Query: 290  YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +         + I       +D  +K L  F P  GRG+ +   ++     +IDESYNAN
Sbjct: 849  HISNMLCTAAVAIAL--DLPIDKTLKKLINFSPLPGRGEHFEAVIDGKTILVIDESYNAN 906

Query: 350  PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            P SM+AAI      + +   + I VLGDM ++G+ ++  H+ L   +    I  V L G 
Sbjct: 907  PLSMQAAIQGARTTARNRSSKLILVLGDMLQLGDQTEKLHLSLLPEILSPEIRLVVLVGE 966

Query: 410  HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  LK  +     V   ++++     +   +   DVV+ K SNS     L++ L 
Sbjct: 967  QMALLKGHITDHAEVIAVDSVEDALEPLIFGIRANDVVMAKGSNSINLNYLVDQLR 1022


>gi|119385135|ref|YP_916191.1| Mur ligase middle domain-containing protein [Paracoccus denitrificans
            PD1222]
 gi|119374902|gb|ABL70495.1| Mur ligase, middle domain protein [Paracoccus denitrificans PD1222]
          Length = 1020

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 137/486 (28%), Positives = 219/486 (45%), Gaps = 38/486 (7%)

Query: 4    LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSI-------------------APQEA- 42
            LWT   L Q   G  +       FV  ++  SR +                      E  
Sbjct: 536  LWTAEQLEQVTGGKWLVPPSDAWFVCSVTHKSRQLDNWNVSAPKLLAVIDRRMAMKHELS 595

Query: 43   -FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
             F A  G H+D HD +  A+Q      +V   +         P+  V D L AL +L VA
Sbjct: 596  DFTA--GKHWDIHDQLP-ALQGRIAAAMVARPVEGLAP--GFPLLQVPDPLHALIQLGVA 650

Query: 102  ARLRSKATIIAITGSVGKTTTK-EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R K  ++A+TGS GKT+    ++       K       +YN+ +G+   LA  P   
Sbjct: 651  GRNRLKGHVVAVTGSAGKTSQSLMLMAAMAKDRKVIGNSALNYNSRVGILHLLANTPPST 710

Query: 161  DFGIFELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLE 218
            D  + E  ++ +   +F     +RP I ++T IAP+H+      +E +A  KA + EG+ 
Sbjct: 711  DLVVVEAAVTAINAPKFQNIRLMRPDIGLVTNIAPSHMQRSGQGLETVARRKANLVEGIA 770

Query: 219  KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              GT+ LN +  F+++   ++    +  + +FG  ++AD +L  + Q + +    +   G
Sbjct: 771  PGGTLLLNREIDFYDVFLDRAKQRDLCVV-TFGAGEDADLRLVGYDQATGRVKARLPGGG 829

Query: 279  KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +      G HMA N L  +G+  +L  D+   ++ L  F P EGRG   R       
Sbjct: 830  LL-DYRISAPGRHMAMNSLACIGVRLLLGGDLAPFLEGLEEFQPAEGRGAVSRVEFEGCP 888

Query: 339  FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             T++D+SYNANP SM+AA+S  + +     GRRI +LGDM E+G+ +  +H  LA  +  
Sbjct: 889  LTVVDDSYNANPVSMQAALSTFAGMKV--AGRRILILGDMAELGKDASRYHRGLAAQILK 946

Query: 399  YNISHVWLSGFHVLALKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 V L G  +  L D L +S        +   ++ L   +   L  GD V++K+SNS
Sbjct: 947  IRPDEVLLCGPLMQELWDELSKSGAGRVDGAHYPRVEVLLSNLAGHLRSGDTVLLKASNS 1006

Query: 455  CGFYRL 460
             G  R+
Sbjct: 1007 VGLGRI 1012


>gi|294056592|ref|YP_003550250.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615925|gb|ADE56080.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 457

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 110/472 (23%), Positives = 179/472 (37%), Gaps = 29/472 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQK 63
           W    L     GH +G      +     D+R +   + F A+  G   DGHDF+  A+  
Sbjct: 4   WDPSQLADWTNGHWLGAHEPEAIRAFCFDTRQLQSGDCFIALTAGAR-DGHDFVEQALAA 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GAG  +V+  +      L IP   V+D L A+  +  A R      ++ +TGS GKT+TK
Sbjct: 63  GAGSALVSRPL-----DLPIPQLVVEDTLLAMEAIGAAVRAAFSGPVVGVTGSCGKTSTK 117

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLV 182
           EML + L           ++NN IGVP+TL  +  +  +F + E G++  GE+  L  ++
Sbjct: 118 EMLRLVLGESVAHATAG-NWNNRIGVPMTLFGLDSERQEFAVIEAGINQPGEMNHLGEMI 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V+T I  AHL     +E IA+ K+++      +  + L  +   +          
Sbjct: 177 AADVVVVTAIEAAHLELLQTVETIANEKSQLMAHARPSALLILPAELLNYAAFNRYRARA 236

Query: 243 GIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                      +   +    R        S       G   E         + +N  + +
Sbjct: 237 VAVVEAGSPVPEGVLSTVSYRFEGPRIVLSGEYFAAVGGRCEFQLASQSRGIRRNAALAM 296

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              ++L      +   +  + P   RG+    A  Q       + YNANPASM  A+   
Sbjct: 297 VTAAVLGQPTKVSRVGIENWQPSGDRGRLIESAGRQ----FYVDCYNANPASMADALDAF 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLAL 414
           +   P  E  R  VLG M E+G  +   H +  E         V+L G          AL
Sbjct: 353 AHSVPD-EVPRCYVLGAMNELGADAPRLHRESIEGHDFRPQDRVYLVGPQALLAGYAQAL 411

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLL 465
           + A  +       E  +      + +L       +K S S    +L+   L 
Sbjct: 412 EKAGSQLSFGEKVENFESEIADFKGAL------FLKGSRSYRLEQLLPEALR 457


>gi|170760634|ref|YP_001786880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407623|gb|ACA56034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 483

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 154/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+++    I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLGYSFIKED-KKEIEKIEYDSRKVKEGDLFICIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  +A            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEELSYYKDCTIIKVPDSRKALAIMASNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL+      GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALADMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L      +    E              + DV+VV  K 
Sbjct: 404 DNPRTEDPTLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|119870782|ref|YP_940734.1| Mur ligase middle domain-containing protein [Mycobacterium sp. KMS]
 gi|119696871|gb|ABL93944.1| Mur ligase, middle domain protein [Mycobacterium sp. KMS]
          Length = 1299

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 135/476 (28%), Positives = 210/476 (44%), Gaps = 34/476 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFA-------------IKGPH 50
              H+L +  QG    + P    +  ++   + + PQ                  ++G +
Sbjct: 426 LNAHELAEITQGVWEVMPPDGWTMKAVAFVKKRLEPQALVLPHCRTYRYGVDRDTVRGLN 485

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
            +G+  +  A                      +P   V  V  AL  LA+A R      I
Sbjct: 486 GNGYALLADA--------------TPLAFPHGVPRLKVASVRNALTNLALATRASYPGRI 531

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+TGS GKT+T  M+   L           ++N   GV   +A +  +    + E+  S
Sbjct: 532 VAVTGSAGKTSTCNMIEDLLQVFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAAS 590

Query: 171 HLGEIRFLTHLV-RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            L +       V RP +A+IT+I  AHL  F   + +A  K+ +F+ + +   +    D 
Sbjct: 591 FLSQRGGPRPNVLRPEVAMITSIGEAHLEYFGSPQGVAEVKSNVFDLMSRGTAVIPR-DA 649

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             ++ +  ++ A G  T+ SFG   +AD  L  +         E+  +          +G
Sbjct: 650 DTYDYMVQRARAAGATTV-SFGAHPSADAHLLSYSAADGVVEAEIFGERI--TYELGALG 706

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A+N +  LG+V+ L  D   A  AL+      GRG  +      G FTLID++YNAN
Sbjct: 707 RHFARNSVGALGVVAALGLDWRRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNAN 766

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P+S++AAI +LS+ +    GRRIAVL DM E+G  S+ FH  LAE L    I  V+L G 
Sbjct: 767 PSSVRAAIEMLSERATPPRGRRIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGD 826

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + AL D LP  I   Y  T+DGL   +     DGDVV+ K SN    ++++    
Sbjct: 827 QMRALWDDLPSEIRGQYYPTVDGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 882


>gi|331696616|ref|YP_004332855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951305|gb|AEA25002.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Pseudonocardia dioxanivorans CB1190]
          Length = 488

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 116/496 (23%), Positives = 187/496 (37%), Gaps = 51/496 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF---- 56
           M  +    D+  A  G          V  +  DSR+I P   F A+ G   DGHDF    
Sbjct: 1   MIEM-RLADVAAATGGRLHRASGDERVTAVEFDSRAIGPGGLFLALPGERVDGHDFAAAA 59

Query: 57  --------------------ILHAVQK-GAGLVVVNTDMVASIGSLSIPVFGVD----DV 91
                               +  A  + GAG  +   D   +  ++   +  +     D 
Sbjct: 60  VAAGAAGVLAARAVDAPAVVVPPAEARSGAGTYLAEHDPDGAGAAVLAALARLARHNVDA 119

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L A               ++ +TGS GKT+TK++L   L+ +  T A  GS+NN +G P 
Sbjct: 120 LTAGG--------PPGLAVVGVTGSSGKTSTKDLLAAVLAPLGPTVAPPGSFNNELGHPW 171

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T  R        + EL     G I  L  +  P I V+  +  AHL  F   E IA AK 
Sbjct: 172 TALRADASTRHLVLELSARGPGHIAALCRVAPPRIGVVLNVGRAHLGEFGSPEAIAQAKG 231

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ E L   G   +   ++    +           + S G+S  A  +       + ++ 
Sbjct: 232 ELVEALPAGGDGGVAVLNADDPAVIG-MAPRTAARLVSVGRSAGATVRAVDVGSEAGRAR 290

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +       +V    +G H   N L    +   L A  D+   +L    P      R  
Sbjct: 291 FRLVSPAGEADVALRLVGTHHVGNALAAAAVALELGATPDSVAASLGAAGPV--SRWRME 348

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A      T+++++YNANP SM+AA++ L+ +      R  AVLG M E+G    + H +
Sbjct: 349 VADRADGVTVVNDAYNANPESMRAALTALTDL--GRGRRTWAVLGRMAELGAQEAAAHAE 406

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +A       +  +   G                 +          +++ +  GDVV+VK+
Sbjct: 407 VAAAAGELGVGTLLAVGEPGY--------GSAARHVADPAAALALLRAEVTPGDVVLVKA 458

Query: 452 SNSCGFYRLINLLLEE 467
           S + G  R+   LL++
Sbjct: 459 SRAVGLDRVAAALLDD 474


>gi|313638778|gb|EFS03865.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Listeria seeligeri FSL S4-171]
          Length = 309

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 9/317 (2%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T  +++  +             + G+  D+R I P + F    G   DGH+F+  
Sbjct: 1   MNLKKTVGEVVAMLDSSIHTDTFRDVVITGVCFDTRQIKPGDLFVPFVGNLRDGHEFVGQ 60

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A + GA       ++         PV  V+D L AL +LA+      +  +IAITGS GK
Sbjct: 61  AREMGAVATFWQKNV--PNPPTDFPVILVEDTLLALQELAMKYIQEVRPKVIAITGSNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+++   + +  K +   G++NNHIG+P T+  MP D +  + E+GM+H  EI  L+
Sbjct: 119 TTTKDIMAAIVETSYKVHYTGGNFNNHIGLPYTILTMPEDTEVAVLEMGMNHRHEIEVLS 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + +P IA+IT I  AH+      +EIA AK EI  G              + E L   S
Sbjct: 179 KIAKPDIAIITNIGEAHIEYLGSRQEIAKAKLEITAG----LNPSGILIYPYEETLL-LS 233

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G     +FGKS  ++    +    +E +      +   +E+    IG H   N +  
Sbjct: 234 QIDGDFRQLTFGKSTESEIYPLEIHAEAEGTSFVTNWE-PDLEIFVPIIGEHNVFNTMAA 292

Query: 300 LGIVSILTADVDTAIKA 316
           +     +  +      A
Sbjct: 293 MLAAREIGIEGKKIQTA 309


>gi|187932581|ref|YP_001886634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720734|gb|ACD21955.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B str. Eklund 17B]
          Length = 484

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 94/475 (19%), Positives = 178/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ I+ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSINYDSRKVNKSDIFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++++  D+   + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDDI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L S  K    IG+  N+IG                       +   V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++     ++      GR +R     N  +  +ID ++
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR IA+ G     G             +         +
Sbjct: 352 TPDG-----LQNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      +  ++D L      +    E              + DV+V+  K 
Sbjct: 403 TSDNPRSEEPMRIIEDILVGIEKDNYEIIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|312143942|ref|YP_003995388.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
 gi|311904593|gb|ADQ15034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halanaerobium sp.
           'sapolanicus']
          Length = 487

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 150/478 (31%), Gaps = 48/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L  I+   I       ++ +  DSR I   + F AIKG + DGHD+I  AV+KG
Sbjct: 1   MKLNKILNGIEHKIINGKNDLNISDLQYDSRKIKNNDLFIAIKGFNVDGHDYIKEAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+V   +   +    I    V++    +  LA            +I ITG+ GKTTT
Sbjct: 61  ATAVIVEKKLKKYL--SGITYIEVENTRKEMAVLAKNFFANPLADIDLIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDV---------------DFGIFE 166
             ++   L              N   G  ++  R   +                 + + E
Sbjct: 119 AYLIYNILRKNSFKTAMFGTIKNIIAGEEISATRTTPESLDLYRYFSQAKTAGVQYIVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S      +  H +   +AV T ++P HL     +     AK+++F  L    +  +N
Sbjct: 179 V--SSHALDLYRVHQMDFSLAVFTNLSPEHLDYHKDLASYRQAKSKLFSQLSPDASAVIN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +  K              ++NAD   + +K     S                
Sbjct: 237 LDDKNSGFMLEK---SKAHNFKYSLSNQNADLYCQNYKLKQN-SLNYQSQGLIKRNFQLK 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +  V +L    D  + +L       GR +      +           
Sbjct: 293 LGGIFNIYNSLAAVLSVFLLGISADKIVNSLEEIKGVPGRFELINAGQDFQLIVDYA--- 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                     +  + + +      R+ VL      G         +   L+  N  +V+L
Sbjct: 350 -----HTPDGMENVLEAAKEITKNRLIVL---FGCGGDRDRSKRPVMAKLAEDNADYVFL 401

Query: 407 SGFHVL---------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +            +K     S  +           +   +     D++++     
Sbjct: 402 TNDNPRSEDPEFILSEIKSGFSNSFSNYEVISDRKKAIVEAINFAKKDDIILILG-RG 458


>gi|218282364|ref|ZP_03488646.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
 gi|218216650|gb|EEC90188.1| hypothetical protein EUBIFOR_01228 [Eubacterium biforme DSM 3989]
          Length = 480

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 163/460 (35%), Gaps = 39/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P   + G+S DSR++ P   +F + G   DGHDFI  A++ GA  +V + +++ 
Sbjct: 5   KLFKNAPTVNITGLSFDSRTVRPGNIYFCLPGLTNDGHDFIDSAIKNGAVCIVHSKELL- 63

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
              +       V+DV  A+NK+A     +   K  +  +TG+ GK+T   ++   ++   
Sbjct: 64  -NMASGAVYIRVEDVNDAMNKVARIFYAKPSDKLKMYGVTGTNGKSTITNIIRDMINDKT 122

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHL 181
                      +  + L       D  F                 L +S  G  +     
Sbjct: 123 PCGYIGTIAIKYGDIELQPNLTTPDALFLQSKLADMVRVGMKACALEVSSHGLAQHRVDG 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    A+ T +   HL     +E    AK+ +F+ L K   + +   D            
Sbjct: 183 ISFDCAIFTNLTYDHLDFHGTMENYFEAKSLLFKNLVKENGVSILNRDDEKYEALKDCSK 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + S+G +K AD++    K  S+ +  ++   G    +  + +G     N+L  + 
Sbjct: 243 A---RVVSYGINKEADYRAINIKMSSQGTQFDLVYSGHMYPIKTNLVGNFNVYNLLAAVS 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            ++    D+D  I+  S     EGR +R  C   Q +  ++D ++  +            
Sbjct: 300 ALNETGYDLDKIIEKCSHIAQVEGRMERIDC--GQPYNVIVDFAHTPDGMEKMMQFGRSI 357

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
            +  H     IAV G               +   L+     ++ ++           + D
Sbjct: 358 TMPGHR---LIAVFGSAG----KRDVHKRKVFGELADKYCDYIIVTEDDPRDEDPKEIAD 410

Query: 417 ALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   I      + +          SS  +GD V++  K 
Sbjct: 411 QIKSGIQNTLHVFVQDRYEAIHQAISSAQEGDTVLLLGKG 450


>gi|251779601|ref|ZP_04822521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083916|gb|EES49806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 484

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 177/475 (37%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I    +       ++ ++ DSR +   + F  IKG   DGH +I  A++ G
Sbjct: 1   MNLKDILKGIDYKLVQGSLDKEISSVNYDSRKVKKSDVFICIKGYATDGHKYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++++  ++   + + +I V  V D   AL  + +        K  II ITG+ GKTTT
Sbjct: 61  ASVIIMQDEI--EVVNKNISVIKVKDTRKALALIGINYYDNPSKKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L S  K    IG+  N+IG                       +   V++ + E
Sbjct: 119 AFMIKSILESNGKKVGLIGTIANYIGNEKLHTERTTPESLELQELFNNMVNKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + V   + + T +   HL      E   ++K ++F   +++    +N
Sbjct: 179 V--SSHSLELDRVYGVDFEVGIFTNLTRDHLDFHKTFENYYNSKFKLF---KRSNIRIIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ + +    + L  K IY +   ++++F+    K  S+    +V L+ K  E +  
Sbjct: 234 NDDNYGKQVIKDLNKLKAKNIYEYSIKEDSNFKAFDEKMGSKNISFKVNLE-KEEEFILS 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G    L   ++     ++      GR +R     N  +  +ID ++
Sbjct: 293 IPGEYNIYNALGAIGACYKLNIPMEAIKNGIN-KVIVPGRCERTATNYNLPYDIIIDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR IA+ G     G             +         +
Sbjct: 352 TPDG-----LKNILETARGFTQGRLIAIFG----CGGDRDKVKRPQMGKIGTDIADIAIV 402

Query: 407 SGFH------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      +  + D L      +    E              + DV+V+  K 
Sbjct: 403 TSDNPRSEEPMRIIDDILVGIEKDNYEVIENRKDAIKKAMDIAKENDVIVIAGKG 457


>gi|167838008|ref|ZP_02464867.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 269

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  ADRGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPMVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++     A     G++NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGEPARLATAGNFNNDVGLPLTLLRLTAAHRLAVIELGMNHPGETDT 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  +  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LAKIAAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR 234


>gi|16078582|ref|NP_389401.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309391|ref|ZP_03591238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313717|ref|ZP_03595522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318640|ref|ZP_03599934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322914|ref|ZP_03604208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315282|ref|YP_004207569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
 gi|417328|sp|Q03523|MURE_BACSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|40162|emb|CAA78767.1| murE [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633889|emb|CAB13391.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484069|dbj|BAI85144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus subtilis subsp. natto BEST195]
 gi|320021556|gb|ADV96542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis BSn5]
          Length = 494

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 161/462 (34%), Gaps = 46/462 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++    
Sbjct: 16  VNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVENGAAAIVAEREV---- 71

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             +++PV  V   L AL+ L+ A   +   K  +I ITG+ GKT+T  M+   L    K 
Sbjct: 72  -DVNVPVIIVRQSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 137 YACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTH 180
              IG+    IG               +  T  +M     D  I E+  SH   +  +  
Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKHVDTAIMEV-SSHALSLGRVHG 189

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T +   HL     ++E   A +      G             +  +   A 
Sbjct: 190 C-DYDIAVFTNLTQDHLDYHKTMDEYRHAKSLLFSQLGGAFNHEHPKRAVLNADDEASAY 248

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    I ++G   +AD   +     ++ +  ++     +  +    +G     N+L 
Sbjct: 249 FEKVTAAHISTYGIKNDADVMAKNISITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVLA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +          +   +A+   H   GR +                 Y   P S++  + 
Sbjct: 309 AVATCIAAGIPFEIITEAVEELHGVRGRFELVNQQQEFPVIVD----YAHTPDSLENVLE 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
               +    EG+   V+G     G+  ++    +A++        ++ S         A+
Sbjct: 365 TCRDM---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAI 418

Query: 415 ---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 419 LRDMEAGVENAYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|148988717|ref|ZP_01820150.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
 gi|147925918|gb|EDK76993.1| cell division protein FtsZ [Streptococcus pneumoniae SP6-BS73]
          Length = 356

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 101/366 (27%), Positives = 155/366 (42%), Gaps = 21/366 (5%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3   LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   ++       + P   VDDVL A  +LA     ++   + A+TGS GKTTTK
Sbjct: 62  GAAATLSEKEVA------NHPYILVDDVLTAFQQLAAYYLEKTAVDVFAVTGSNGKTTTK 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +ML   LS+  KTY   G+YNN IG+P T+  MP   +  + E+G  HLG+I  L+ L R
Sbjct: 116 DMLAHLLSTTYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELAR 175

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  A++T +  AHL+ F    EIA  K +I +G+     +    D    + L        
Sbjct: 176 PKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASNSLLLAPADSIVEDYL------PT 229

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            K +  FG+    +           +  +  +       +     G + A N ++   + 
Sbjct: 230 DKKVVRFGQGAELEIT----DLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVA 285

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                  +   +A   F   E    R           ++ + YNANP +MK  +   S I
Sbjct: 286 LQEGVSEEQIHQA---FQGLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAI 342

Query: 364 SPHGEG 369
             +  G
Sbjct: 343 PANEGG 348


>gi|160871690|ref|ZP_02061822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
 gi|159120489|gb|EDP45827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Rickettsiella
           grylli]
          Length = 493

 Score =  163 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 169/479 (35%), Gaps = 48/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I I     + G+  DSR I P + FFA KG   DG  FI  A++KGA 
Sbjct: 3   LSQLLRGMN---ISIATDPIIKGLCQDSRQIKPGDLFFAYKGLKSDGRYFIKDAIKKGAA 59

Query: 67  LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
            ++V  D      + S SIP+  +  +   L  LA            +I ITG+ GKT+ 
Sbjct: 60  AILVEPDENYTIHLKSSSIPIIALHHLTSQLGSLAARFYGYPSRYLPVIGITGTNGKTSC 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------- 166
              L  +L  ++++   IG+  N  G    L R  +     I                  
Sbjct: 120 THFLADSLQKLQRSCGVIGTLGN--GFYGHLKRAQLTTPDAIELQQLLAAFRAQHAQTVV 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +A +T +   HL     ++  A AK   FE L     I LN
Sbjct: 178 MEVSSHRLAQKRLNGTEFSVAALTNLTRDHLDYHKTMDAYAKAKRSFFE-LPGVQHIVLN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQGKSMEV 283
            DD + +L   +       + YS  + +     + +    K    Q  ++ ++     +V
Sbjct: 237 ADDPYAQLWLTEFEKQLPISTYSLKRPQARWSHIPQVTVKKFDFNQQGLQAEIDTPWGDV 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                    A N+   L ++++L +   +  +   V    +    R +    +G   ++ 
Sbjct: 297 FIENQFLMGAFNLSNLLLVLTVLKSLHFSLAEISQVLSRLKSAKGRMQTFRVKGKAIVVV 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +   A       VL  +  H  G+   + G     G         L   ++     H
Sbjct: 357 DYAHTPDA----LQQVLQALRSHCRGQLYCLFG----CGGDRDKGKRPLMAAIAEEGADH 408

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++  +            ++     +  ++Y         +   +    D+V++  K 
Sbjct: 409 IIVTNDNPRYEDPFQIFQDIRQGFKGNKAIYYEPERKKAIAYALKAAQPSDIVLIAGKG 467


>gi|156741877|ref|YP_001432006.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
 gi|156233205|gb|ABU57988.1| alanine racemase [Roseiflexus castenholzii DSM 13941]
          Length = 849

 Score =  163 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 194/469 (41%), Gaps = 21/469 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL A+ G            G S DSR     E F A++ P  DGH +I  A+  
Sbjct: 6   MIDLDDLL-AVGGRLTAPPVTRRFTGFSYDSRLTGVGELFLALRTPRDDGHAYITDALAS 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  +V  T       S +  V   DD      + A     +    ++ +TGSVGKT+T 
Sbjct: 65  GAAGIVCATP---PTESANATVIIADDPALLAARWAAVRLRQVAPLVVGVTGSVGKTSTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
             +   L+ I  T+    S+N+ IG+P++LAR+  D  F + E G ++ GE+R LT L  
Sbjct: 122 RAIAAVLAGIAPTFRSRRSFNSLIGLPVSLARLQDDHRFAVLEYGTAYPGELRRLTTLFP 181

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T+ +P  LS F  +  +      + E L   G   LN DD     L+A + A  
Sbjct: 182 PQIAVVTSASPMRLSAFGSVAGLTREFGALVEALPADGWAVLNGDDPTVAALRAVTLAQV 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    +FG     D +    +   + + + +   G S++     +G       L  +G+ 
Sbjct: 242 L----TFGAGGGCDLRAETLRFGLDGTQVRLSYGGASVDAAIPLLGEPAVGAALAAVGVG 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ A   L+   P  GR    R    +    L+D++  A PA   A ++ L  +
Sbjct: 298 LACGMSLEQAAARLAHIEPPAGR---LRPHPARNGAILLDDTVGAEPA---AMLAALRTL 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFH---IDLAEVLSLYNISHVWLSGFH---VLALKDA 417
           +     RRIAVLGD+    +  ++       +  + +      +   G     V+     
Sbjct: 352 AALPARRRIAVLGDLPADSDDPRNEKNVCTAIGTLAAQV-ADVLIWKGDAGTSVIHAARQ 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +   +      T+      + S   +GD+++V    +    RL+  L+ 
Sbjct: 411 IRPDLPATIVHTIAAALEAVPSDTGEGDLILVCGGAAARLERLVAALVA 459


>gi|126643213|ref|YP_001086197.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 397

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 109/412 (26%), Positives = 176/412 (42%), Gaps = 24/412 (5%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKT 120
             G  + +V   + A      I    V D   AL +L    R ++ +  +IA+TGS GKT
Sbjct: 3   ANGCQVAIVERPIDAE-----IAQLVVADTRLALGQLGAYRREQNAQLKVIALTGSSGKT 57

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS +  T    G+ NN +GVP+ L  +  +  + + ELG +H GEI + + 
Sbjct: 58  TTKEMLGSILSRLAPTLITRGNLNNDLGVPMMLLELRKEHQYAVMELGANHQGEIDYTSK 117

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +V+PH+A I  I  AHL  F G + I  AK+EI+  +   G   +   D F   ++    
Sbjct: 118 IVQPHVAGILNIGTAHLGEFGGRDGICRAKSEIYRHILPQGVAIIPQQDDFTAEIRE--- 174

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     I SFG     D    + +   + +  ++     S  V     G H  QN    +
Sbjct: 175 AAKSHQIMSFG--AGGDVFATEIELLPQSANFQLHTPQGSSFVRLPFAGEHNVQNATAAV 232

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L   ++  +K L+     +GR    +    +     ID++YNANP SM       
Sbjct: 233 AFALALGVSLEDIVKGLAQAQGAKGRLNFIQ----KAPHLFIDDTYNANPTSM----RAA 284

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
           +Q+     G ++ V+GD+ E+G+ S   H DL   L+   + H+   G    A  +    
Sbjct: 285 AQVLLQQNGIKVMVMGDIGELGDSSWQEHHDLGRDLAELPLDHIVAVGQFASAALEGAGL 344

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGD----VVVVKSSNSCGFYRLINLLLEE 467
            S  +   +T      F+ + +          + K S       L+  L+E+
Sbjct: 345 HSTKLKAFQTQAEALPFLINLIQTHQPQSMSFLFKGSRFTHMETLMADLMEK 396


>gi|331269348|ref|YP_004395840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
 gi|329125898|gb|AEB75843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum BKT015925]
          Length = 483

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 161/475 (33%), Gaps = 48/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ +   ++       VN +  DSR I   + F AI+G + DGH FI  A++ G
Sbjct: 1   MKLIQILKELDYTNLNGTLDLDVNKVEYDSRKILSGDVFVAIEGFNVDGHKFIPKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V + D      + S     V++   AL  +A         K  +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKDTE---INESCTYIKVENTRKALAIIASNFYGNPSNKIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         IG+  N IG                  +       ++++ I E
Sbjct: 118 TYMIKSILEHAGCNTGLIGTIANFIGEEKIKAERTTPESLELHEMFKKMKDKNIEYCIME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + +     V T +   HL      E    AK  +F   + +      
Sbjct: 178 V--SSHSLSLDRVYGLEFSQGVFTNLTQDHLDFHKTFENYYEAKLSMFNNAKNSIINI-- 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS+ E +        +K   ++   + AD         +  +  ++  +G ++ +   
Sbjct: 234 -DDSYGERMLKDIPNTNLKV--TYSTERQADLVANNIVNHARGAEFDLIYKGTTIHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   + L       GR +      N GF  ++D ++
Sbjct: 291 IPGIYNVYNALCSAGACLEEEISIEKVKEGLENVV-VPGRCENVTKKYNLGFDVIVDYAH 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L+      +GR I+V G     G         +   +         +
Sbjct: 350 TPDGLE-----NILNTAKDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDLSDIAII 400

Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      +  + D +      +    E                DV+VV  K 
Sbjct: 401 TSDNPRTEEPMSIIDDVVSGIDKDNYVVVENRKDAIKEAMKIAKKDDVIVVAGKG 455


>gi|182414444|ref|YP_001819510.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
 gi|177841658|gb|ACB75910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Opitutus terrae PB90-1]
          Length = 499

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 143/464 (30%), Gaps = 46/464 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       ++G+ +DSR + P   FFA+ G   DG  FI  AV +GA  +V     + + 
Sbjct: 17  VKGSLDRPISGLVLDSRRVVPGNLFFALPGLRADGASFIDEAVNRGAVAIVTQK--MPAH 74

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               + V  V D    L ++A           T+I +TG+ GKTT   +L   L+  ++ 
Sbjct: 75  PPGKVTVIQVADARATLARVAQRYYKFPDRDMTVIGVTGTNGKTTVTHLLKHFLNGDQRV 134

Query: 137 YACIGSYNNHIGVPLTLARMPV---------------DVDFGIFELGMSHLGEIRFLTHL 181
                   +     +   R                       + E+  S  G  +     
Sbjct: 135 GLLGTINYDLGARTVPAYRTTPESLDIYGMMAQMRDAGCRQAVMEV--SSHGIDQQRVAG 192

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL---KAK 238
           ++   AV T +   HL     ++     K  +F G           +      +    + 
Sbjct: 193 LQFGAAVFTNLTRDHLDYHKTLDAYFEVKKRLFTGGTGAAPKVAVVNFDDPYGVTLAASL 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + +FG++  AD +          S   +   G +ME+    IG +   N+L 
Sbjct: 253 KREHQSAKLVTFGENLQADVRAENVHLNFTNSTFRLVWPGGTMEIESPLIGRYNVSNLLA 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L  D    +  L  F    GR            + ++ +  + + A      +
Sbjct: 313 AIAAAWGLGRDPFVFLARLRAFKGVPGR---MERIDEGQPYNVLVDYAHTDDA----LRN 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  +     GR   V G     G         L            + +  +  A     
Sbjct: 366 ALGMLRAITPGRLFVVFG----CGGNRDRTKRPLMVKAVQEFADFAFATADNPRAEPLPQ 421

Query: 414 ----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +     + + E           +   GD +++  K 
Sbjct: 422 IFDDMKAGVLAPEKITWIEDRRRAISLALDAAKAGDCLLIAGKG 465


>gi|108801628|ref|YP_641825.1| Mur ligase, middle region [Mycobacterium sp. MCS]
 gi|108772047|gb|ABG10769.1| Mur ligase, middle region [Mycobacterium sp. MCS]
          Length = 851

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 126/395 (31%), Positives = 187/395 (47%), Gaps = 6/395 (1%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            D         +P   V  V  AL  LA+A R      I+A+TGS GKT+T  M+   L 
Sbjct: 45  ADATPLAFPHGVPRLKVASVRNALTNLALATRASYPGRIVAVTGSAGKTSTCNMIEDLLQ 104

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV-RPHIAVIT 190
                     ++N   GV   +A +  +    + E+  S L +       V RP +A+IT
Sbjct: 105 VFGVPKRPTKNFNTFDGVNGEVANLTNEA-IAVIEVAASFLSQRGGPRPNVLRPEVAMIT 163

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +I  AHL  F   + +A  K+ +F+ + +   +    D   ++ +  ++ A G  T+ SF
Sbjct: 164 SIGEAHLEYFGSPQGVAEVKSNVFDLMSRGTAVIPR-DADTYDYMVQRARAAGATTV-SF 221

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G   +AD  L  +         E+  +          +G H A+N +  LG+V+ L  D 
Sbjct: 222 GAHPSADAHLLSYSAADGVVEAEIFGERI--TYELGALGRHFARNSVGALGVVAALGLDW 279

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A  AL+      GRG  +      G FTLID++YNANP+S++AAI +LS+ +    GR
Sbjct: 280 RRAAGALASSREVTGRGMTFDVGSASGRFTLIDDAYNANPSSVRAAIEMLSERATPPRGR 339

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           RIAVL DM E+G  S+ FH  LAE L    I  V+L G  + AL D LP  I   Y  T+
Sbjct: 340 RIAVLADMLELGPRSEEFHRALAEPLLGAAIDRVYLVGDQMRALWDDLPSEIRGQYYPTV 399

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           DGL   +     DGDVV+ K SN    ++++    
Sbjct: 400 DGLQAALDREFADGDVVLFKGSNGTELHKVVAHFK 434


>gi|239616915|ref|YP_002940237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239505746|gb|ACR79233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 488

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 155/475 (32%), Gaps = 49/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ ++   +       + GI  DSR +     F  I G ++DGH FI  A+++G+ 
Sbjct: 5   LRELIKDLKEKRVEGRQDLVIRGIECDSRKVEEGFLFVCIPGFNFDGHKFIPEAIKRGSR 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           +VVV  D+     +  + V  V +   AL  LA         K  ++ I G+ GKTTT  
Sbjct: 65  VVVVEKDV---KTAKDVTVIKVPNTRYALAVLANRFYGYPSKKLQVVGIAGTNGKTTTTY 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE-----LGMS 170
           ++   L    K  A  G+    +G          P +L    +  +    E     + +S
Sbjct: 122 LVRDVLKKAGKKVALFGTIEYDLGNRTLPASTTTPQSLELQAMLNELVNKEFEYVVMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +          I V T I+  H+     +E    A+ + F  L +TG   +   D 
Sbjct: 182 THATVLDRVTGCEFDIGVFTNISRDHMDFHKTMENYLEAEIKFFRLLSRTGRRAVINIDD 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +     K+    I T       KNAD +    K     S   V              G 
Sbjct: 242 PYAEHIIKNTRTEILTYG--INDKNADIRAFDIKVSKTGSRFNVITPLGETVFYLRLPGR 299

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +G+      +++   +A++                 +       +      
Sbjct: 300 YNVYNALAAVGVGISEGLNLNEIREAIAHASVPGRF--------ERIDCGQSFDVIVDYA 351

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  A    L       EGR I V G     G+        L  V++        L+  +
Sbjct: 352 HTPDALQKALETARGLSEGRIIVVFG----CGDDKDR--RPLMGVVAARMSDIAILTSDN 405

Query: 411 VL---------ALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       ++  + +   S      E              +GD+V++  K 
Sbjct: 406 SRNEEPSEIISDIESGIKKVDNSFQYLVIEDRFEAITQALEMAKEGDLVLIAGKG 460


>gi|296331093|ref|ZP_06873567.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674248|ref|YP_003865920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151737|gb|EFG92612.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412492|gb|ADM37611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 494

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/460 (18%), Positives = 155/460 (33%), Gaps = 42/460 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++    
Sbjct: 16  VNDSQDPEITSIEMDSREVKKGSLFVCVKGYTVDGHDFAQKAVESGAAAIVAEREL---- 71

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             + +PV  V   L AL+ L+ A   +   K  +I ITG+ GKT+T  M+   L    K 
Sbjct: 72  -DVDVPVIIVRRSLRALSVLSDAFYGQPTKKLQLIGITGTNGKTSTTHMVDEILKKAGKR 130

Query: 137 YACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              IG+    IG                    +   D       + +S         H  
Sbjct: 131 TGLIGTMYMKIGDETLPVKNTTPESVTLQKTFKKMNDKQVDTAIMEVSSHALSLGRVHGC 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              IAV T +   HL     ++E   A +      G             +  +   A   
Sbjct: 191 DYDIAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEHPKRAVLNADDEASAYFE 250

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    I ++G   NAD   +     ++ +  ++     +  +    +G     N+L  +
Sbjct: 251 KVTAAHISTYGIKNNADVMAKNITITAQGTSFDLVTNKGTKHITMSLVGQFNVYNVLAAV 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                     +T   A+   H   GR +                 Y   P S++  ++  
Sbjct: 311 ATCIAAGIPFETITAAVEELHGVRGRFELVNQQQEFPVIVD----YAHTPDSLENVLNTC 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL-- 414
             +    EG+   V+G     G+  ++    +A++        ++ S         A+  
Sbjct: 367 RDM---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVELADEPIFTSDNPRSEDPRAILR 420

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 421 DMEAGVENEYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|157692192|ref|YP_001486654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
 gi|157680950|gb|ABV62094.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pumilus SAFR-032]
          Length = 493

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 157/464 (33%), Gaps = 47/464 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I   P   +  I +DSR +     F  IKG   DGHD+   AV+ GA  +V       
Sbjct: 18  ELINENPD--ITSIEMDSREVKEGSLFVCIKGYTVDGHDYAEKAVKSGAAAIVAEHP--- 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI- 133
            +    +PV  V     AL ++A A   +   K  +I ITG+ GKT+T  M+   +    
Sbjct: 73  -LNITDVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQVMRKAE 131

Query: 134 --------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                             +     P            +  DVD  I E+    L   R  
Sbjct: 132 KKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  IAV T +   HL   + +EE   A +      G         +   +  +   
Sbjct: 192 GCDYD--IAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEAS 249

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +    +    + ++   + AD   +  +   + +  ++     + +V    +G     N+
Sbjct: 250 SYFEKVTAAEVMTYALEQKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNI 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +  +     +T + A+      +GR +   C  +          Y   P S++  
Sbjct: 310 LAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVD----YAHTPDSLENV 365

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412
           ++   ++    EG+   V+G     G+  ++    +A++   Y    V+ S         
Sbjct: 366 LTTCREL---TEGKIFCVIG---CGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPS 419

Query: 413 ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+   +   +     H          F  ++   GD V++  K 
Sbjct: 420 AILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGKG 463


>gi|255527763|ref|ZP_05394616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296186675|ref|ZP_06855077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296187064|ref|ZP_06855463.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|255508550|gb|EET84937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048351|gb|EFG87786.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
 gi|296048712|gb|EFG88144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           carboxidivorans P7]
          Length = 483

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/473 (15%), Positives = 153/473 (32%), Gaps = 45/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I+   +       +  I  DSR++   + F  I+G   DGH ++  AV  G
Sbjct: 1   MNLKKILKEIKYELLKGNDDLEIREIQYDSRNVKSGDLFVCIEGYSTDGHKYVSSAVSNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+ + D+          V   +D    L   +         K  +I ITG+ GKTT+
Sbjct: 61  AAAVICSKDIENLTE---CTVIKTEDTRKVLALASANYYDHPSDKLKVIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L +       +G+  N++G               +       + E      + 
Sbjct: 118 TFMMKSILEAQGYKVGLLGTIANYVGDKKIPAHRTTPESLELQKLFAEMVEEGVNYCIME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V+   A+ T +   HL      E   +AK  +F+         L+  
Sbjct: 178 VSSHSLYLDRVYGVKFCQAIFTNLTRDHLDFHKTFENYYNAKLILFKN-------TLSSV 230

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    + +        S+   K AD +       S     ++  + ++  +  +  
Sbjct: 231 VNIDDEYGERVYEDSEGKKTSYAIDKVADVKGSNLHMHSRGVEFDITYKNETQHINLNIP 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L +          + T  + L       GR +      + G+  ++D ++  
Sbjct: 291 GKYNVMNALGSAAACLGEGMSLATVKEGLEAMLCVPGRCEIVTKNYDLGYEVIVDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L       +G+ I+V G     G    +    +   +         ++ 
Sbjct: 351 DGLE-----NILKTAREFTKGKLISVFG----CGGDRDNTKRPIMGKIGTELSDKAVITS 401

Query: 409 FH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +      +  +K+ +      +    E                DV+VV  K 
Sbjct: 402 DNPRTEDPMSIIKEVVAGVEKDNYIVVENRREAIKKAMEMAKKDDVIVVAGKG 454


>gi|170755176|ref|YP_001781095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
 gi|169120388|gb|ACA44224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum B1 str. Okra]
          Length = 483

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 154/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSIIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVPDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L      +    E              + DV+VV  K 
Sbjct: 404 DNPRTEDPKLIIKDVLEGIEKDNYIVVEGRRDAIRKAMEMAKENDVIVVAGKG 456


>gi|302874626|ref|YP_003843259.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
 gi|307690763|ref|ZP_07633209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium cellulovorans 743B]
 gi|302577483|gb|ADL51495.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulovorans 743B]
          Length = 481

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 168/473 (35%), Gaps = 46/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ +    +       +NGI  DSR +   + F  I G   DGH+F   AV  G
Sbjct: 1   MNLKELIKDLDYEVLNGDIDVDINGIQYDSRKVNSSDVFVCIPGFTVDGHNFAEKAVNSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A +++   D+ A      + +  V +   AL K++       +    II +TG+ GKTT+
Sbjct: 61  ANVIICEKDITAY---KDVTIIKVKNTRKALAKVSAVYYNNPERRLKIIGVTGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             ML   L         IG+  N+IG                  L     +       + 
Sbjct: 118 VFMLKAILEKAGFKVGLIGTIANYIGDKKLKAERTTPESLELFKLFNDMTEAGVDYCVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + +  +  + T +   HL     +E   ++KA++F     + +  +N D
Sbjct: 178 VSSHSLDLDRVYGIEFNSGIFTNLTQDHLDYHKTLENYFNSKAKLF---TVSKSSIINLD 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +   L  K+         ++   KNAD +       S  S  E++  G+      +  
Sbjct: 235 DDYGVALADKTQEK-----LTYAIDKNADLKAENINLTSRGSTFELEYNGEKEIFNINIP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +  QN L  +G +      +    + L       GR +      N GF  ++D ++  
Sbjct: 290 GKYNIQNALGCIGSILKEGVHLKVIKEGLDSLKAVPGRCEIVTQGRNLGFEIIVDYAHTP 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +       + +L       +GR I+V G     G    +    +   +   N     ++ 
Sbjct: 350 DS-----LLKILKTAREFTDGRLISVFG----CGGDRDNSKRHIMGGIGSENSDIAIITS 400

Query: 409 FHVLA------LKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +      +K  +   +  +    E           +  +GD++VV  K 
Sbjct: 401 DNPRSEEPSEIIKQVVSGIKKDNYLVEEDRRKAIKLAMKTAKNGDIIVVAGKG 453


>gi|257784286|ref|YP_003179503.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
 gi|257472793|gb|ACV50912.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Atopobium parvulum
           DSM 20469]
          Length = 478

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 119/497 (23%), Positives = 201/497 (40%), Gaps = 50/497 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   ++ A     +    +       IDSR +     F A  G   +G+ ++   
Sbjct: 1   MVKL-SVEQIVAATHAQLLHRGTREVAGCAVIDSREVQQGSLFVAFAGEKVNGNSYL--- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---------------- 104
                   +      A++   S PV   D++L +L     +                   
Sbjct: 57  --------LSAAQAGAAVVVASEPV--TDNLLDSLAATGASVLEAADDDCEAFLLALAAA 106

Query: 105 ----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    ++ +TGSVGKTTTKEML   + + ++ +A  G++NN IG+PLT+   P D 
Sbjct: 107 WREAHPNWLVVGVTGSVGKTTTKEMLRRGIGATRRVHATAGNHNNLIGLPLTVLSTPEDT 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + ELGM+H GEI  LT + RP +AVIT +  +H+      + IA AKAEI  G+   
Sbjct: 167 EVLVLELGMNHAGEITRLTSVARPTVAVITNVGTSHIGLLGSRKNIARAKAEIVSGMRAF 226

Query: 221 ----GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEV 274
                T+       + + +  K          + G +++     +K     +   +    
Sbjct: 227 GSIEPTLIQASAGDYTKFIADKFARPARVVCKTVGATEDDVMSAQKVILDEKGLPTATIS 286

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G S  V     G  +  ++L+ L  V  L  D+D A +A+        R        
Sbjct: 287 ASSGWSRTVTLEVPGRVVVDDLLLALEAVETLGLDLDAAAEAIEQMPATRMRLSVLDATC 346

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                 +ID+SYNA+P S  AA+ VL Q+    EGRRIA++G++ E+G   +  H  +  
Sbjct: 347 GAK---IIDDSYNASPNSTAAALDVLMQMPA--EGRRIALIGEIGELGPEEKRLHGYVGA 401

Query: 395 VLSLYNISHVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  N   V   G      + +A          +     ++     +   L  GDV++ 
Sbjct: 402 YIAAKNPDFVAFVGTGAAREMVEAARVMGFSEDKIEQFNDVNEALAVLGPVLKQGDVLLA 461

Query: 450 KSSNSCGFYRLINLLLE 466
           K+S S      +  + E
Sbjct: 462 KASRSAQLDIFVKGVTE 478


>gi|121611475|ref|YP_999282.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556115|gb|ABM60264.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 475

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 112/472 (23%), Positives = 184/472 (38%), Gaps = 26/472 (5%)

Query: 3   PLWTFHD----LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            + T       L   I    +       V  +  D+R++   + F A++GP +D H F+ 
Sbjct: 18  AMMTLQQAFALLQPRIPAARLVGAGATPVARVHTDTRTVQAGDLFVALRGPRFDAHAFLA 77

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A                 +    +P   V D L AL  LA   R +    +IA+TGS G
Sbjct: 78  QAR----AGGAAAALAQGGLADAGLPGIEVPDSLAALALLAAGWRAQFDLPLIAVTGSNG 133

Query: 119 KTTTKEMLTIA--LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           KTT  +M+             A  G++NN IG+PLTL R+       + ELGM+H GEI 
Sbjct: 134 KTTVTQMVAAILRAWQGDAALATQGNFNNAIGLPLTLLRLRARHTVAVVELGMNHPGEIA 193

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L  + +P +A++      HL     +  +A     +F  L   G      DD +  L +
Sbjct: 194 ALAGIAQPGVALVNNAQREHLEFMHSVAAVARENGSVFASLPAHGVAVFPADDDYQALWQ 253

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +         + G    AD +            + +      +    H  G H   N 
Sbjct: 254 ELAAGRECLRFGAGGAVDGADARWVD-----GAWALTLATPQGPVTTRLHIAGRHNVGNA 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L          A +    + LS F P  GR + +         +++D+SYNANP S++AA
Sbjct: 309 LAAAACALAAGAPLAALAQGLSGFSPVPGRSRSFSIRHAGRQISVVDDSYNANPDSVRAA 368

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I++L+++       R+ VLGDM E+G  +   H           I  ++           
Sbjct: 369 IALLAELPA----PRLLVLGDMAEVGAQAAQLHAQAGAQAHAAGIHRLFA---LGAQSAH 421

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSCGFYRLINLLLE 466
           A        + +++D L   ++ +L   DV  V+VK S S    +++  +  
Sbjct: 422 AASAFAGAQHFDSIDSLCAAVRQALP--DVGSVLVKGSRSMRMEQVLKEIQA 471


>gi|194014718|ref|ZP_03053335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
 gi|194013744|gb|EDW23309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Bacillus pumilus
           ATCC 7061]
          Length = 493

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/464 (18%), Positives = 157/464 (33%), Gaps = 47/464 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             I   P   +  I +DSR +     F  IKG   DGHD+   AV+ GA  +V       
Sbjct: 18  ELINENPD--ITSIEMDSREVKKGSLFVCIKGYTVDGHDYAEKAVKSGATAIVAEHP--- 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI- 133
            +    +PV  V     AL ++A A   +   K  +I ITG+ GKT+T  M+   +    
Sbjct: 73  -LNITEVPVIIVKHSQRALARIADAFYEQPTHKLNLIGITGTNGKTSTTHMIEQMMRKAE 131

Query: 134 --------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                             +     P            +  DVD  I E+    L   R  
Sbjct: 132 KKTGLIGTMYMKVNDDILDVKNTTPESVTLQKTFKQMLDQDVDTAIMEVSSHALHLGRVH 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  IAV T +   HL   + +EE   A +      G         +   +  +   
Sbjct: 192 GCDYD--IAVFTNLTQDHLDYHNTMEEYKHAKSLLFSQLGSAFHHNKPKHAILNADDEAS 249

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +    +    + ++   + AD   +  +   + +  ++     + +V    +G     N+
Sbjct: 250 SYFEKVTAAEVMTYALERKADVMAKNIQIMPKGTQFDLVTPIGTKKVTVALVGKFNVYNI 309

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +  +     +T + A+      +GR +   C  +          Y   P S++  
Sbjct: 310 LAAVSVGIVSGLTFETIVSAIEELEGVKGRFELVNCDQDFPVIVD----YAHTPDSLENV 365

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412
           ++   ++    EG+   V+G     G+  ++    +A++   Y    V+ S         
Sbjct: 366 LTTCKEL---TEGKIFCVIG---CGGDRDKTKRPQMAQIAVKYADEPVFTSDNPRSEDPS 419

Query: 413 ALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+   +   +     H          F  ++   GD V++  K 
Sbjct: 420 AILKDMENGVPDAYYHSFVNRKQAIFFAIANAKKGDTVLIAGKG 463


>gi|255536698|ref|YP_003097069.1| putative bifunctional
           UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
           ligase/alanine racemase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342894|gb|ACU09007.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D- alanyl ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 813

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 100/468 (21%), Positives = 185/468 (39%), Gaps = 26/468 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-AP-QEAFFAIKGPHYDGHDFIL 58
           MN  +T   L +      IG   +  V G++ DSR+I +P   AF AI      G  +I 
Sbjct: 1   MN--YTTLQLSEITGSELIG-DGKLCVTGMAYDSRNIFSPLNTAFLAINTAKNSGEKYIT 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117
            A++KG  +V+    + +      +    V+D L  + KLA     +      I ITGS 
Sbjct: 58  SAIEKGISVVISQHRIESE---TDVTWIIVEDSLKFIQKLAKYHFAQFTLKTTIGITGSN 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKT  KE L  +L     T     S+N+ +G+PL+L ++    + GIFE+G+S   E+  
Sbjct: 115 GKTIVKEWLYQSLFDEFITVKSPKSFNSQLGLPLSLLKVSARDEIGIFEVGISKPSEMER 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L  + +P I V+T I PAH SNF   E       E  +    +  I  N D+     L  
Sbjct: 175 LADIFKPQIGVLTHIGPAHESNF---ENQKQLIEEKIKLFSDSDVILFNGDNLLVHSLIT 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + ++     + S+G   + D  ++   +  + S +    +                  + 
Sbjct: 232 ERYSSK--KLISYGFETHNDIFIKSSPKEGDLSIVYFGEEFNLPA------QRRDEATLN 283

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L ++++L     +        +  +    R           +I++ YN +  S+K   
Sbjct: 284 NALCVIAVLKVLGFSTDIIREKINMLKPVEMRLESVKGLRNNLIINDYYNLDLDSLKI-- 341

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                I+ + +  +  VL D  E G+ +   +  ++ + +     HV+L G  +    + 
Sbjct: 342 -AFQFINEYNKPAKTLVLTDFVE-GKETTLLYQTVSNLTNQQKFQHVFLIGDEITKYSEL 399

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                 V        L        V+ +++++K +      ++ + L 
Sbjct: 400 FE--GDVAVFNNTTQLIESHYLDSVENELILLKGARKFEIEKVKDHLE 445


>gi|257458295|ref|ZP_05623444.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
 gi|257444322|gb|EEV19416.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Treponema vincentii ATCC 35580]
          Length = 430

 Score =  160 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 105/401 (26%), Positives = 167/401 (41%), Gaps = 32/401 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L  F  L  A+ G  I         N ++ DSR++ P   F  ++G   DGH +I  A+Q
Sbjct: 2   LLGFEALCTAVAGTFICNYSHYAGFNSVTTDSRTVNPHALFIPLRGMQQDGHRYIEQALQ 61

Query: 63  KGAGLVVVNTDMVASIGSLS----------IPVFGVDDVLGALNKLAVAARLRSK-ATII 111
           +GA  V+ +   +    +                 V+  L AL   A A   R      I
Sbjct: 62  QGADCVLADAAHLDIQENAQHILVLCKRYEATCIRVEQTLKALQDAAAAYLERFPQLLKI 121

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            +TGS GKTTTKE+L    +   +T    G+ N+  G+PL++  +  + + GIFELGM+ 
Sbjct: 122 GVTGSNGKTTTKELLASIFAQKYRTVKNEGNLNSETGLPLSVFTITKEHEVGIFELGMNR 181

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            GEI  L  +++P+IAVIT I  AH+      + IA  K  IF   ++T   F+   D +
Sbjct: 182 KGEIAELAAVLKPNIAVITNIGTAHIGMLGSKDAIAQEKKHIFSCFDETSVGFVPAQDKY 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E L+   H   +                      + +     +++ K   +     G H
Sbjct: 242 AEFLQDVPHGKIV-------------TYSADPDAYTLEGLSGAEIRYKGETIHLPLPGKH 288

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + +       + +    +       GR +  R     G  T + + YNANP 
Sbjct: 289 NVHNAFAAIAVAEYCKIPLQSIKAGIEQMQALFGRSQIIR-----GPVTYLLDCYNANPD 343

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           SM A +++ + I     G++I VL  M E+G  S   H  +
Sbjct: 344 SMNAGLALCANIRVS--GKKIYVLASMKELGFESHEAHKAV 382


>gi|108761901|ref|YP_633748.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
 gi|108465781|gb|ABF90966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Myxococcus xanthus DK 1622]
          Length = 507

 Score =  160 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 154/489 (31%), Gaps = 54/489 (11%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+L       + G      V G++ DSR + P + F AI G   DG  FI  AV +
Sbjct: 1   MKLTDVLAGCGAEQTSGGRSAVDVTGVTQDSRRVKPGDLFVAIPGTKEDGAQFIGEAVSR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  VV    +     S  +P F V     AL  +A     R   + T++ ITG+ GKTT
Sbjct: 61  GAVAVVSEKPV----PSSQVPFFKVSSARKALALIAANFYGRPADQLTLLGITGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE---L 167
           T  +L    ++   +   IG+                  PL L R+  ++     E   +
Sbjct: 117 TSYLLEAMSTAAYASTGVIGTLGYKFAGRTVECANTTPDPLELHRILREMVEAGVETVIM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +   H +    A  + ++  HL     +E+   +K ++F        + +  
Sbjct: 177 EVSSHALAQERVHGLTFKAAGFSNLSRDHLDYHKDMEDYFQSKRKLFAENLSATGVAVVN 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D  +            +  + F +  + +          +     ++     + +    
Sbjct: 237 GDDTYASRIYNEQRGQKRMAWKFSRQGSGEISAADVSFSLQGIKGVLKTPAGDIPLKSKL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N+L+ +GI            + +    P  GR +R       G   ++ +  +
Sbjct: 297 LGPHNLENILLAVGIGLGAGFARRDVQEGIERMMPVAGRMERVENYGPSGAPAVLVDYAH 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            + A        +       +GR IAV G     G         L   ++        ++
Sbjct: 357 TDDA----LKRSIEAARSLAKGRVIAVFG----CGGDRDKGKRPLMGAVAGEGADLAVVT 408

Query: 408 G-----FHVLAL-----------------KDALPRSIHVHYSE-TMDGLFLFIQSSLVDG 444
                      +                           +  +           S     
Sbjct: 409 SDNPRTEDPEEIISQVTAGIEKSGLRRISAGKAKSGEKGYLVDADRRAAIEQAISLASAD 468

Query: 445 DVVVV--KS 451
           DVV++  K 
Sbjct: 469 DVVLIAGKG 477


>gi|16804077|ref|NP_465562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes EGD-e]
 gi|224501162|ref|ZP_03669469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-561]
 gi|21362688|sp|Q8Y5L9|MURE_LISMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16411508|emb|CAD00116.1| murE [Listeria monocytogenes EGD-e]
          Length = 491

 Score =  160 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        I +FG  + ADFQ    K  S  S  ++     +  +   
Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                 Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460


>gi|330721151|gb|EGG99273.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-22C6-diaminopimelate--D-
           alanyl-D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 376

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 110/376 (29%), Positives = 163/376 (43%), Gaps = 9/376 (2%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V++   AL  L    R   K  ++A+TGS GKTT KEM    L  +  T A  G++NN +
Sbjct: 2   VENCRDALGLLGSINRESFKGPMLAMTGSAGKTTVKEMSAAILGQLGNTLATAGNFNNDL 61

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G PLTL R+  +  + + ELG S +GEI +   LV+P +A+IT  A AH+  F  +  + 
Sbjct: 62  GAPLTLLRLAKEHQYAVLELGASSIGEIAYTAGLVKPDVAIITNAAEAHIEGFGCLNNVV 121

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK EI + L  +G   +N DD      KA++             S    F      Q +
Sbjct: 122 QAKGEILDALPPSGVAVINGDDLNAYKWKARAGDRRQLVFSLNENSGADFFARSYELQAN 181

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E+     +++V  + +G H   N L      S L A +      L    P  GR 
Sbjct: 182 GGFAFELVSPEGAIKVTLNHLGKHNIANALAAAAATSELGATLLQIKTGLEAVGPVAGRL 241

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                +       +ID+SYNANP S++AAI VL        G +I VLGDM E+G+ +  
Sbjct: 242 TGITLSSG---ARIIDDSYNANPESLRAAIDVL----SQCPGHKILVLGDMAELGDTALH 294

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            H + A       I ++   G                H  E  D L   +++ +     V
Sbjct: 295 DHQEAARYARNQGIDNLMTVGSLSAHAAREF--GPQGHAFENHDSLIETLRNRINGHTTV 352

Query: 448 VVKSSNSCGFYRLINL 463
           +VK S S    R++  
Sbjct: 353 LVKGSRSAHMERIVQA 368


>gi|313677375|ref|YP_004055371.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
 gi|312944073|gb|ADR23263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marivirga tractuosa DSM 4126]
          Length = 488

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 156/477 (32%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  ++  S+       ++ I  DSR +   + F AIKG   DGH++I  A+++
Sbjct: 1   MANLKDILYKVKLISVSGATDIAIDAIQFDSRIVGAGDVFVAIKGTQVDGHEYISKAIEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V     + S     +     D+   AL  +A         K  +IA+TG+ GKTT
Sbjct: 61  GAVAIVCED--IPSDIHPQVTYVQTDNSAKALGVMAANYFGHPSEKLKLIAVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T  +L     ++      I +  N I                  +L +  VD    I  +
Sbjct: 119 TVSLLHQLFMNLGYHTGMISTVQNQINNAVIPATHTTPDALQLNSLLKKMVDSGCNIVFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     ++   AV T I+  HL      +    AK ++F+ L       +N 
Sbjct: 179 EASSHAIEQERMAGLKLAGAVFTNISHEHLDYHKTFDNYIKAKKKLFDDLPSDAFALVNV 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++     A      Y++     A ++ +      +   + +  +      +   
Sbjct: 239 DDKRGMVMLQNCKASK----YTYSLKMMAIYKAKVLSNSIQGLELNIDQKDVWFRQI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N    L   +      + + + L      E +  R+    N    T + + Y 
Sbjct: 292 ----GYFNAYNLLAAYATAHLLEEESEEVLMNLSQIELKNGRFEQVPNNAGITAVVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +       E     V       G    +    L   ++      V L+
Sbjct: 347 HTPDALENVLQTIDNFRTGNEQVLTVV-----GCGGNRDTTKRPLMAEIACRFSDRVILT 401

Query: 408 G-----FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
                     A+   + + + V                    S    GD+++V  K 
Sbjct: 402 SDNPRFEEPEAIIADMQKGVPVSQVRKVTNLPDRKEAIKLACSFAQKGDIILVAGKG 458


>gi|254831720|ref|ZP_05236375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 10403S]
          Length = 491

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        I +FG  + ADFQ    K  S  S  ++     +  +   
Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                 Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 AHTPDGLLNVLETIDEFAKKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460


>gi|224498512|ref|ZP_03666861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes Finland 1988]
 gi|254827074|ref|ZP_05231761.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|254899264|ref|ZP_05259188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes J0161]
 gi|254912596|ref|ZP_05262608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
 gi|254936923|ref|ZP_05268620.1| MurE [Listeria monocytogenes F6900]
 gi|284802485|ref|YP_003414350.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284995627|ref|YP_003417395.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|258599457|gb|EEW12782.1| MurE [Listeria monocytogenes FSL N3-165]
 gi|258609523|gb|EEW22131.1| MurE [Listeria monocytogenes F6900]
 gi|284058047|gb|ADB68988.1| hypothetical protein LM5578_2241 [Listeria monocytogenes 08-5578]
 gi|284061094|gb|ADB72033.1| hypothetical protein LM5923_2192 [Listeria monocytogenes 08-5923]
 gi|293590588|gb|EFF98922.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes J2818]
          Length = 491

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        I +FG  + ADFQ    K  S  S  ++     +  +   
Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                 Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460


>gi|168180115|ref|ZP_02614779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|168182386|ref|ZP_02617050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|237794795|ref|YP_002862347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
 gi|182669114|gb|EDT81090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum NCTC 2916]
 gi|182674468|gb|EDT86429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Bf]
 gi|229260624|gb|ACQ51657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum Ba4 str. 657]
          Length = 483

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFIKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L           E              + DV+VV  K 
Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|297544898|ref|YP_003677200.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842673|gb|ADH61189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 483

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 171/477 (35%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   + G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +VV+ ++    G   +    V+D   A+ K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AIAIVVDREIKEYPG---VTTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSEHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         +     IAV T ++  HL     +EE A  K+++F+  ++   I ++
Sbjct: 177 V--SSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKARVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++
Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNMMEALKEYKAGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + +        E       +   +    DV+++  K 
Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453


>gi|153939113|ref|YP_001390805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|152935009|gb|ABS40507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum F str. Langeland]
 gi|295318875|gb|ADF99252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Clostridium botulinum F str. 230613]
          Length = 483

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 152/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+++    I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLGYSFIKEY-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L           E              + DV+VV  K 
Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|302380954|ref|ZP_07269415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
 gi|302311175|gb|EFK93195.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Finegoldia magna ACS-171-V-Col3]
          Length = 478

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/507 (15%), Positives = 157/507 (30%), Gaps = 73/507 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKINYIDYTKNNDSEITNVTNDSRKIKKGGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +VV  D+        I    V D   AL +++         K  +I +TG+ GKTTT
Sbjct: 61  ANTIVVTEDVTEID---DINYIKVKDSRVALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMP-----------VDVDFGIFE 166
             M++  L  +      IG+            P T   +              +D  + E
Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S  G        +   +AV   ++  H+     +E    AK  +FE           
Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +      +  Y+F     +DF+    +    +    +  + K+++ V +
Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E R +  +  +          + 
Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNEMGINIVIDFAHT- 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +  +        +R   +  M   G+ +     ++ ++ +  N+  V  
Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTSEIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS-NS 454
           +        + +           +      +              +GD V++  K   N 
Sbjct: 392 TDDPKFDTYENIADDIISGIEEENGEYVRIKDRKSAIKHAIEMANEGDFVLLLGKGQENF 451

Query: 455 CGF--------------YRLINLLLEE 467
                              +++ L  +
Sbjct: 452 IKLKGNEKTPYSEKETVNEVLDELKNK 478


>gi|294793910|ref|ZP_06759047.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
 gi|294455480|gb|EFG23852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 3_1_44]
          Length = 496

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGH+++  A++ GA 
Sbjct: 6   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAIEAGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+V+  +     S  + V  V+D   A+                +I +TG+ GKTTT  
Sbjct: 66  AVLVSKPVDV---SGDVCVITVEDTRAAMMVCVPYFFDYPANSMRMIGVTGTNGKTTTSH 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDV-------DFGIFE------LGMS 170
           M+   L +       IG+ +  IG     +     DV          + E      + +S
Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTYCVMEVS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228
                      V    AV T +   HL      E    A  K                  
Sbjct: 183 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAV 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        I ++    +            + S   V   G    V  +  
Sbjct: 243 INIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 302

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +G   +    ++   KAL  F    GR +                + + 
Sbjct: 303 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    ++L       E R I V G     G    +    +   ++      V+++ 
Sbjct: 363 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 411

Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                +KD L    H                +   GD+V++  K 
Sbjct: 412 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAQPGDIVLIAGKG 469


>gi|206896268|ref|YP_002247020.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738885|gb|ACI17963.1| MurF, putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 440

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/467 (19%), Positives = 165/467 (35%), Gaps = 39/467 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + + G  +G       + ++  S    P   F A+ G    G  F   A+Q GA 
Sbjct: 3   ASQLAKIVNGQLVGD--DFEFDHVAFSSNDCNPGTLFIALPGSKTHGAKFATQAMQNGAS 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ + +  AS          V D   A+ KL           I+ + G+ GKTT KE+ 
Sbjct: 61  GLLTDVEPEASN------YVLVTDAFEAVKKLGETLVRSYSGKIVVVLGASGKTTLKELA 114

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPH 185
                    +     +    +   L   R    +  + I E G+    +      +  P+
Sbjct: 115 RSLAPVRVWSSYGNRNTIISLVTDLFNERESALNAPYWILEFGIHDKKDADDFLQVFNPY 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T++   HL     ++       ++     K   +  +       +L          
Sbjct: 175 AALFTSLGAEHLEFLENVDVAVRTNLKVGMAATKRFALVSDEYSVEDAIL---------- 224

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
               FG  + + +       C   +  ++   G+  +VV    G   AQ++         
Sbjct: 225 ----FGSPQTSAWFDISSFTCDGCTLGKLMCHGEEKDVVLPFWGKRSAQSVAGAAAFWVS 280

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D     L   +         +     G   +  ++YNANP SMK  + V+S++  
Sbjct: 281 EGFGLDE----LPWENLDTINIWGRQQLTRWGDLLIFFDAYNANPESMKEFLEVVSEVPY 336

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----S 421
             +G    V+GDM E+GE S  +H  LA  L    I ++ L G  V      L +    +
Sbjct: 337 GKKG---LVIGDMLELGEYSHYWHRKLAHWLKKSGIQYLILVGNEVKYTLRELEKVDGHA 393

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVV--VKSSNSCGFYRLINLLLE 466
           ++V +   ++    F    ++  D+ +  +K S      +LI  + E
Sbjct: 394 MYVEWYRDVETARSFF---MIPEDIELLGLKGSRRIALEKLIQEVSE 437


>gi|289578678|ref|YP_003477305.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
 gi|289528391|gb|ADD02743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           italicus Ab9]
          Length = 483

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 87/477 (18%), Positives = 171/477 (35%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   + G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDIGGVCYDSRKAKKKYLFIAIKGFKTDGILYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV+ ++    G   I    V+D   A+ K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AIAVVVDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTTKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         +     IAV T ++  HL     +EE A  K+++F+  ++   I ++
Sbjct: 177 V--SSHSLALKRVNECEFDIAVFTNLSQDHLDFHHDMEEYAKTKSKLFKMAKRASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++
Sbjct: 289 IPGLFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNMMEALKEYKAGRKILLFGA----GGDRDRIKRPLMGEIAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + +        E       +   +    DV+++  K 
Sbjct: 397 TSDNPRSEEPREIISQIEEGIKKTDCPYVVIENRKEAIRYALLNAQKDDVIILAGKG 453


>gi|298252074|ref|ZP_06975877.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546666|gb|EFH80534.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 476

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 118/477 (24%), Positives = 190/477 (39%), Gaps = 29/477 (6%)

Query: 4   LWTFHDLLQAIQGHS-----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           ++T  D++   Q        +             DSR     + F AI G   DGH FI 
Sbjct: 1   MFTLQDVIAGSQELLSMHGSLADPGHLLFQCAQHDSRQYERDDLFVAITGARVDGHRFIP 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAITGSV 117
              + G    +  T  ++           V DV+ AL   A     R   T+ I ITGS 
Sbjct: 61  AIARAGGAGALCTT--LSEDVPAGFLQLVVPDVVKALQATARVRVQRQPETLKIGITGSS 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKE +   L  +  T     SYNN +G PLTL R+  +  + + E+G   +GE+R 
Sbjct: 119 GKTTTKEAIAAVLGRVAPTLKTYASYNNELGYPLTLLRLEAEHRYAVLEMGAEWVGELRG 178

Query: 178 LT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L   +  P  +VITT+  AHL +F  +  +A AK+E+ + L   G  FLNYDD     +K
Sbjct: 179 LCETIACPDWSVITTVGAAHLKHFGSLANVAIAKSELVQVLSPEGIAFLNYDDPVVRAMK 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K+ A  I      G +  A     +    S  +             +    G   A   
Sbjct: 239 EKTRARVIYYGQGDGAAVRALHVEERGLLGSRFTLRIEDEDVPVQLRLPGTHGITTALAA 298

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                  +I    +  +++ALS            +        TLID++YNA   S+ A 
Sbjct: 299 AAVGSAANIPLESIRESLEALSPVQG----RGVVKGGAGPNGSTLIDDTYNAIRHSIIAM 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412
              +   +   +G+R  VLG++ E GE ++  H+     L+   + ++ + G +      
Sbjct: 355 AQAMQATTIAPQGKRWVVLGELFEQGEHTRDEHLASGLGLA-GKVDYLVVLGDNARYYME 413

Query: 413 -ALKDALPRSIHVHYSET----------MDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            AL+  +PR    H+S               +   ++  +   D++++K S      
Sbjct: 414 GALQAGMPRKAIYHFSVDTTKSTDVEEGKRAIASLLKEKVTPDDLLLIKGSRQMRME 470


>gi|255026329|ref|ZP_05298315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-003]
          Length = 491

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGAPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        I +FG  + ADFQ    K  S  S  ++     +  +   
Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                 Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALHISMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPESDAYVVHENRRDAIRFAVNQAEAGDVILIAGKG 460


>gi|284037156|ref|YP_003387086.1| alanine racemase [Spirosoma linguale DSM 74]
 gi|283816449|gb|ADB38287.1| alanine racemase [Spirosoma linguale DSM 74]
          Length = 835

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 102/450 (22%), Positives = 167/450 (37%), Gaps = 23/450 (5%)

Query: 32  IDSRSIA---PQEA-----FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS--- 80
            DSR +             FFAI G H+DGH FI    +KG    V+    +        
Sbjct: 15  TDSRQVTGHAADSLANEAVFFAILGEHHDGHAFIGDLYRKGIRQFVIERSALTPERREEL 74

Query: 81  ---LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                     VD  L  L  LA   R + +  +I ITGS GKT  KE L   L+      
Sbjct: 75  ATYADAQFTKVDSSLQTLQTLAAEHRRQFRIPVIGITGSNGKTIVKEWLAQLLADEYVIA 134

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               SYN+ +GVPL++ ++       IFE G+S   E++ L  ++RP I + T I  AH 
Sbjct: 135 RSPKSYNSQLGVPLSVHQLNESHTMAIFEAGISQTQEMQALEAIIRPTIGIFTNIGTAHD 194

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F   ++  + K  +F             D      L  K+    ++ I      + A 
Sbjct: 195 QGFRTRKQKVAEKLRLFIHAGTLIYCTDYADIDEEVNLLLKAVNPDMRFITWSLTGQKAT 254

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +Q    +    Q  +  +  G    +          +N++  L  +  L       +++ 
Sbjct: 255 YQ---GRIAGNQVSLTGKNTGFDQPLTLPFTDPASVENLMHCLVTMLSLRTWSAAELQSR 311

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                      R           LID+SYN +   ++ A+  L+Q       RRI +L D
Sbjct: 312 LNRLRP--VSMRLEQKEGINNCELIDDSYNNDMVGLQLALRFLNQ--QGTRSRRIVILSD 367

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           + + G+    F+  +  ++    +      G  V   K          ++ T + L  F 
Sbjct: 368 VLQTGQPEAEFYEQVGNLMRANEVGQFIGIGPVVSRNKLFFADGSQF-FATTEEFLAQFS 426

Query: 438 QSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            S L     V+VK +    F R+++ L  +
Sbjct: 427 FSELR-DSTVLVKGARPFSFERIVHRLERK 455


>gi|167037223|ref|YP_001664801.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040637|ref|YP_001663622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermoanaerobacter sp. X514]
 gi|300914678|ref|ZP_07131994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307724088|ref|YP_003903839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|320115642|ref|YP_004185801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166854877|gb|ABY93286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X514]
 gi|166856057|gb|ABY94465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|300889613|gb|EFK84759.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X561]
 gi|307581149|gb|ADN54548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter sp.
           X513]
 gi|319928733|gb|ADV79418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 483

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 172/477 (36%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ ++   I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D    + K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S               IA+ T ++  HL     +EE A  K+++F+  ++   I ++
Sbjct: 177 V--SSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIEDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++
Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453


>gi|119505603|ref|ZP_01627674.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
 gi|119458546|gb|EAW39650.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [marine
           gamma proteobacterium HTCC2080]
          Length = 1110

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 119/413 (28%), Positives = 196/413 (47%), Gaps = 8/413 (1%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +    +KG  LV+ +       G        V +   AL KLA+A R   +  +I +TGS
Sbjct: 371 VAQVFKKGVALVISSEQNSVPEGQ----YLEVRNTFTALIKLALARRAAFRGRVIGVTGS 426

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
           VGKTT   M+T  L    + Y  I ++N+  GVP ++A +P    + + E+GM     I 
Sbjct: 427 VGKTTVCSMVTSLLGVHGEVYKNIANFNHQPGVPKSIANIPRTARYAVIEMGMGAKRTIL 486

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               LVRPH AV+T I   H+     +  + + K EI  G+E  GT+ LN D ++F  L 
Sbjct: 487 PKAVLVRPHTAVVTDIQADHMEFHESVASVITTKMEIIWGVESGGTVVLNRDSAYFATLH 546

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +       I +FG+   AD    +      QS ++V++  ++ +      G HMA N 
Sbjct: 547 GLALQRSDINILTFGQHPQADICAEEIVLEPVQSVIQVRVFQQTFKYTLSLPGMHMALNS 606

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNANPASMKA 355
           L+ + ++     D+ T++        +  R ++ R     G    I D+S+NANPAS+++
Sbjct: 607 LIAIAVIVSEGVDLATSLPVFENIGAETRRNQKIRVTSASGARIQILDDSFNANPASIRS 666

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            + +L  + P  EGRRI VL DM EMG  +  +H  LA+ ++   I      G +  AL 
Sbjct: 667 NLHLLELMRPESEGRRILVLSDMGEMGSEALHYHTALAQDINDSQIDIFLSIGDYCHALD 726

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +   I   +  +++ L  F+Q  +  GD+V  K S       +++ L++ F
Sbjct: 727 QLIENRITHKHFNSVEALETFLQEVVRSGDIVSFKGSAREA--TIVD-LVKRF 776


>gi|89897954|ref|YP_515064.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
 gi|89331326|dbj|BAE80919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Chlamydophila felis Fe/C-56]
          Length = 448

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 198/437 (45%), Gaps = 17/437 (3%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            ++G++IDSR + P + FFA+ G   DGH F+  A Q GA   VV+ D       L +  
Sbjct: 25  KISGVAIDSRQVRPGDLFFALSGQCTDGHHFLKQAAQAGAVAAVVSKDYCGDSFGLDL-- 82

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V D   AL +         + TI+ ITGS+GKTTTK      LSS+ + YA   SYN+
Sbjct: 83  VVVQDTTEALKEAGENQGHLFQGTIVGITGSIGKTTTKTFAKTFLSSVYRVYASPKSYNS 142

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
            + VPL+L     D DF I E+G+S  G +R L  +V P I+VIT IA  H  NF   + 
Sbjct: 143 QLTVPLSLLMADGDEDFIILEMGVSEPGNMRDLLSIVEPEISVITNIADQHAINF-PDQG 201

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     E    L+ +    L  D  ++     +S +    +   + ++ +  ++      
Sbjct: 202 VRGIAEEKSHILQTSRIQLLPKDSPWYSHFIKQSPSSEKFSFAFYNETADFYYK------ 255

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             ++  + +      ++            N+L++  +  +L   VD  I + S       
Sbjct: 256 AIQKDSVIISTPEGDVDFAVSFPYKPAYSNLLISFSLAWLLDVPVDRIIHSCSDLQLPPM 315

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +       Q    +I+++YNA P +M AA+  +   +P   G+ I +LG M E+G  S
Sbjct: 316 RFELSMRNGIQ----VINDAYNACPEAMIAALDAI--PNPSEGGKVILILGHMAELGNYS 369

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444
           +  H  +A    L   + ++  G   L+ +  L   S  V +  +   +   ++S +  G
Sbjct: 370 EEGHAIVANKA-LSKANIIFFIGEKWLSSQHLLKSSSCEVSFYPSAQSVEEILKSVVQQG 428

Query: 445 DVVVVKSSNSCGFYRLI 461
           D+V++K S +     L+
Sbjct: 429 DIVLLKGSRALALESLL 445


>gi|171913324|ref|ZP_02928794.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 507

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/472 (19%), Positives = 161/472 (34%), Gaps = 41/472 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL++ +    I       V G++ DSR + P   FFA++G   DGHDFI  A+ +GA 
Sbjct: 4   LRDLIEGLDKPVISGGLDVEVAGLAYDSRLVKPGFVFFALRGVKSDGHDFIPKALAEGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +V  T   A     S+    V +   AL ++A A +        +  +TG+ GKTTT  
Sbjct: 64  AIVAET---APPEDCSVTWLHVKNARVALAEMAAAYKGHPARSMAVGGVTGTNGKTTTAF 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELGMS 170
           +L   L+   +    +G+    +G    P T                 D       + +S
Sbjct: 121 LLHHLLNHAHRRCGLLGTVVYDVGGDLKPATHTTPESLELQGLLSEMRDRGCVAVAMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +  TH V    AV T ++  HL     +EE   AK+++F     + +  L  +  
Sbjct: 181 SHAIDQHRTHGVPFAAAVFTNLSQDHLDYHGTMEEYFKAKSKLFSSTAASRSGKLVINVD 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +          + ++G    AD++    +     +  E++ +G+S+ V    IG 
Sbjct: 241 DIWGRRLVDAHKEHPGLVTYGLGVAADYRAVNPRYDLTGTSFELEHKGRSLLVRIPQIGQ 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L  L     +  ++   +KA            R            +   Y   P
Sbjct: 301 FNVYNSLAALAAAHGMGCNLRDTVKA---MQSSPQIPGRMERVTPDNHSFHVFVDYAHTP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +  A+S    + P      I V G     G         L       +     L+  +
Sbjct: 358 DGLVNALSTARALRPER---IITVFG----CGGDRDRLKRPLMARAVEEHSDISILTSDN 410

Query: 411 ---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   +    RS H   +               +GD+VV+  K 
Sbjct: 411 PRTEDPQAIMDDARKGFTRSAHALIA-DRKEAIHTAIKGAREGDIVVIAGKG 461


>gi|312130284|ref|YP_003997624.1| alanine racemase [Leadbetterella byssophila DSM 17132]
 gi|311906830|gb|ADQ17271.1| alanine racemase [Leadbetterella byssophila DSM 17132]
          Length = 802

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/446 (21%), Positives = 167/446 (37%), Gaps = 34/446 (7%)

Query: 32  IDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIP 84
            DSR ++  +   FFAIKG  +DGH FI     KG    VV        +   +    + 
Sbjct: 15  TDSRFLSKPDSSIFFAIKGERHDGHQFIPELYDKGIREFVVEKRAFNEKLKGILEKEEVK 74

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              VD  +  L ++A   R +    +I ITGS GKT  KE L   L           SYN
Sbjct: 75  ALLVDSSILTLQEMAGKNRQKYDHPVIGITGSNGKTIVKEWLNALLDKDFDIVKSPRSYN 134

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGV L++  M      GIFE G+S  GE++ L  +++P I V T I  +H   F    
Sbjct: 135 SQIGVALSVWEMSSRYQLGIFEAGISLPGEMKALQKIIQPTIGVFTNIGSSHSEGFESDR 194

Query: 205 EIASAKAEIFEGLE--KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +    K ++F   E       +   ++     L  ++  L I +                
Sbjct: 195 QKIREKLQLFVKSETLIYCRDYSEIEEEVNAFLLEQNPNLKIVSW--------------- 239

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K   E    +     K  +     I     +N++  +     +  D D     +     
Sbjct: 240 SKADVEVKDGKAYFLWKGEKYELPFIDAASVENLVHCILAALSVKEDWD-----VRRLRF 294

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                 R      +    +ID++YN +   +K A+  +SQ   H    ++ +L DM + G
Sbjct: 295 LNPVEMRLELKEGREDNYIIDDTYNNDLGGLKMALQFMSQ--AHTLRGKVLILSDMFQTG 352

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSL 441
              +S    + ++++   ++     G H       L   +   Y +    L        +
Sbjct: 353 LEGESLSRVMQDLIAPQGLNTFIGVGEHWKKYPIHLS-GVETQYYDDTKALLTSGALERI 411

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEE 467
               +++VK +    F +++  L++ 
Sbjct: 412 KS-SLILVKGARIFAFEKIVEKLIKR 436


>gi|256752930|ref|ZP_05493761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748185|gb|EEU61258.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 483

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 172/477 (36%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ ++   I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVKCE-IKGDPNIDISGVCYDSRKAKKKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D    + K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AVAVVADREIKEYPG---ITTVLVEDARATMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S               IA+ T ++  HL     +EE A  K+++F+  ++   I ++
Sbjct: 177 V--SSHSLALNRVDECEFDIAIFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKRASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKAKVLTYGVKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEMSLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+  ID ++
Sbjct: 289 IPGLFNVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFEPVETGKDFYVFIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAIRYALTNAQKDDVIILAGKG 453


>gi|148379429|ref|YP_001253970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|153931323|ref|YP_001383808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936377|ref|YP_001387358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226948793|ref|YP_002803884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
 gi|166224774|sp|A7FTY1|MURE_CLOB1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224775|sp|A5I1T6|MURE_CLOBH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148288913|emb|CAL83000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927367|gb|ABS32867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932291|gb|ABS37790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A str. Hall]
 gi|226844175|gb|ACO86841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum A2 str. Kyoto]
          Length = 483

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   I    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFIKEN-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGVEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L           E              + DV+VV  K 
Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|218671407|ref|ZP_03521077.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli GR56]
          Length = 247

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 140/248 (56%), Positives = 180/248 (72%), Gaps = 1/248 (0%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+  EAFFAIKG   DGHD+   A
Sbjct: 1   MSWLWTTDDMIAAMAGRPFGTLPEG-ITGISIDSRSISSGEAFFAIKGDRVDGHDYASMA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +  GA L+VV+   + ++G L++P+  V+DVL AL KL +A+R RSKA IIA+TGSVGKT
Sbjct: 60  MANGASLLVVSEARLPAMGRLTVPMIVVEDVLAALGKLGLASRERSKARIIAVTGSVGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML   LS   K +A + S+NNH GVPLTLARMP D D+G+FE+GM+H GEIR L  
Sbjct: 120 TTKEMLRQVLSPSGKVHASVASFNNHWGVPLTLARMPGDTDYGVFEVGMNHPGEIRPLVA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G + LN D+  F  L   + 
Sbjct: 180 MIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGHVVLNRDNDQFNFLDRTAQ 239

Query: 241 ALGIKTIY 248
           +LGI+ I+
Sbjct: 240 SLGIEHIH 247


>gi|210622304|ref|ZP_03293073.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
 gi|210154292|gb|EEA85298.1| hypothetical protein CLOHIR_01021 [Clostridium hiranonis DSM 13275]
          Length = 486

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 151/475 (31%), Gaps = 45/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L+ I+  S+       V  +  DSR +     F  IKG   DGH +I  A +KG
Sbjct: 1   MKLNHILEGIEVLSVVGNEDVEVLNVEYDSRKVEEGTLFICIKGFVSDGHRYIDSAYEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A + ++  D+             V+D    + K+A         K  +I +TG+ GKT+ 
Sbjct: 61  ARVFLIQDDVDFKE---DCTYVKVEDTRKTMAKVAANFCEHPADKFDVIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VP-----------LTLARMPVDVDFGIFELG 168
              +   L +  K    IG+     G   VP             + +  VD       + 
Sbjct: 118 TTFINEILRNCNKKVGLIGTIKIFDGDNEVPSNSTTPESVDLQKIFKRMVDNGCDCCAME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               I + T + P HL     +E    AK ++F    KT    +   
Sbjct: 178 VSSHSLELSRVDDTNFKIGIFTNLTPDHLDFHKTLENYRKAKEKLFH---KTTQANIINV 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D        ++        Y++G   +ADF  +  K  +      +     + ++     
Sbjct: 235 DDEGGRKIYEAIKGLDTPCYTYGIEHDADFTAKNIKSDASGVAYTLVTPNHTEDIFIPVP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L  D +  + +L       GR +                + +A
Sbjct: 295 GKFTVYNTLAVIAACEMLGIDKEDYLNSLRNTGGVAGRFETVPNDKGISVIVDYAHTPDA 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL+      EG  IAV G     G    S    L   +         ++ 
Sbjct: 355 -------LENVLNTAREFVEGDLIAVFG----CGGDRDSEKRPLMGGIGQRLSDRCIITN 403

Query: 409 FHVL------ALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L      + +                S   GDV+++  K 
Sbjct: 404 DNPRTEDPELIIKDILAGLDESNENYKVVMDRKEAIKEAIESAKKGDVILIAGKG 458


>gi|46908274|ref|YP_014663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
 gi|67460841|sp|Q71XX5|MURE_LISMF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|46881545|gb|AAT04840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes serotype 4b str. F2365]
          Length = 491

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKANNIRITSHGSTFDLRTPIGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460


>gi|237736449|ref|ZP_04566930.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
 gi|229421491|gb|EEO36538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium mortiferum ATCC 9817]
          Length = 481

 Score =  158 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 165/469 (35%), Gaps = 45/469 (9%)

Query: 8   HDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +LL  +    +     +    G+  DSR I   + F A++G   DGH +I  A++ GA 
Sbjct: 2   EELLLGLDYEILQKGKTEIEFKGMEYDSRKIKDGDIFVALEGSISDGHKYIKQAIENGAK 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            V+V+  +        +    V D+   L K+A       + K  II ITG+ GKTT+  
Sbjct: 62  GVLVSKKVEPEFP---VEYILVKDLRKNLGKIASNFYGYPQKKLKIIGITGTNGKTTSTY 118

Query: 125 MLTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHL 172
           +L   L   K        Y                  +       + +      + +S  
Sbjct: 119 LLESILGKEKVARIGTVEYKIGDEVIEAPNTTPESLDIVKMCKKAVEKGLEYLVMEVSSH 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                   ++   +A  T +   HL     ++    AK ++F  L+ +    +N DD + 
Sbjct: 179 ALSLGRVDMLEFDVASFTNLTLDHLDYHENMDNYFQAKRKLFTMLKDSKKSSINIDDIYG 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + L  +         YS+  +K+AD      +  S+  ++ + L G+  E     +G + 
Sbjct: 239 DRLYKEFGG------YSYSLTKSADLTGEIVEFHSDGQFVRLNLMGEMFEEKLAILGRYN 292

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  +GI   L    +  ++ L       GR +   C  +         +       
Sbjct: 293 LYNVLGVIGIALQLGIGKNIILEKLKDIKGAPGRFELVNCGQDYIVVVDYAHT------- 345

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             A  ++L  I+   +GR I V G     G    +    +   ++        L+  +  
Sbjct: 346 GDALENILKSINELKKGRVITVFG----CGGDRDATKRPIMGEIAQRLSDIAILTSDNPR 401

Query: 413 -----ALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + + + ++  +    E  +   +         D++++  K 
Sbjct: 402 TENPHLIIEDVKKGMNGDHYLVEEDREQAIVKAIEIAQKNDIILIAGKG 450


>gi|47093590|ref|ZP_00231348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|226224644|ref|YP_002758751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes Clip81459]
 gi|254826206|ref|ZP_05231207.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|254933466|ref|ZP_05266825.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|254993141|ref|ZP_05275331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-064]
 gi|47018014|gb|EAL08789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 4b H7858]
 gi|225877106|emb|CAS05818.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|293585028|gb|EFF97060.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes HPB2262]
 gi|293595447|gb|EFG03208.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-194]
 gi|328466072|gb|EGF37245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes 1816]
          Length = 491

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460


>gi|21672880|ref|NP_660945.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
 gi|25453119|sp|Q8KGC9|MURE_CHLTE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21645932|gb|AAM71287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium tepidum TLS]
          Length = 508

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 101/478 (21%), Positives = 168/478 (35%), Gaps = 43/478 (8%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             DL+ A+        G   +  + G++ DSR++ P   F A++G   DGH FI  A++ 
Sbjct: 13  LDDLVAALGALAERRGGDGARAVITGVTCDSRAVTPGALFVAVRGLVADGHHFIGAAIEA 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTT 121
           GA  V      + +  S S+    V D   AL +L+ A       K  +I +TG+ GKTT
Sbjct: 73  GAVAVACEE--LPAAYSDSVTWLVVPDARKALAELSKAFYGNASDKLMLIGVTGTNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T  ++T  L++       IG+    IG                  L R  VD       +
Sbjct: 131 TARLVTSMLNASGVAAGYIGTGLCRIGNHDIPLERTTPEPNRLHDLFRQMVDAGCRAAVM 190

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    +    H +    AV T + P HL     +EE A AK  +F+ L   G   +N 
Sbjct: 191 EVSSHSLVLDRVHGLFFRAAVFTNLTPEHLDFHETMEEYAEAKRLLFDQLNAEGFAVINA 250

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----EQSWMEVQLQGKSMEV 283
           DD   E + A+     +    +   +   D   R     +    E S  +V   G+SM +
Sbjct: 251 DDPRAEFMAARLAPERVFCCSTGDNTSLCDPARRFHAVITASTVEGSKADVTFDGQSMAM 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   NML    +             AL      +    R     ++       
Sbjct: 311 QVPLPGAYNVMNMLEAFTVG---VGLGIDPATALRSLAAADAIAGRMERIWSRDRSRCAV 367

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L  ++P        V G     G   +    ++  + +      
Sbjct: 368 VDYAHTPDALQKALEALRAVTPADAK-LAVVFG---CGGNRDRQKRPEMGRIAAELA-DR 422

Query: 404 VWLS-----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+       +  A+ D +   +                     L  GD+++V  K 
Sbjct: 423 VILTSDNPRDENPEAILDEVEAGMAGRVHLRIADRAEAIRRAVEQLGAGDILLVAGKG 480


>gi|307571612|emb|CAR84791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria monocytogenes L99]
          Length = 491

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 165/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        + +FG  + ADF+    +  S  S  ++        V   
Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFTVKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AI  L      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y+ + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYSSNPIFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460


>gi|213961784|ref|ZP_03390050.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
 gi|213955573|gb|EEB66889.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga sputigena Capno]
          Length = 486

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 148/476 (31%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +        +  +  DSR +     F AI G   +GH++I  A + G
Sbjct: 1   MNLKTLLKNISIKASLYEEDKPITSVCFDSRKVEKGSMFVAISGTQSNGHEYIDQATRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V     +  +    +    V +   AL  +A         K T++ +TG+ GKTT 
Sbjct: 61  ATAIVCEQ--LPQLLFPDVSYIIVPNTHSALALIAANFYGNPSEKLTLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168
             +L                           + +           + + V+ G+    + 
Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYIDNQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +  T  ++    + T +   HL            K   F+ L  T    +N D
Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++     +D++    +   +   + +       +++    
Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTYSDYKAYIIESRFDGLLLRINQHEVWTKLI---- 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L      ++L  D   A+  +S   P  GR +                 Y  
Sbjct: 291 GEFNAYNLLAVYAAATLLGIDELEALTLISAIEPVAGRFQYAVSVTGVITIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  ++ I  H E     V       G         +   ++     +V L+ 
Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401

Query: 409 FHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            +        +   + + +   +                +  +   GD++++  K 
Sbjct: 402 DNPRNEEPETILAEMEQGVQPQHFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457


>gi|168186152|ref|ZP_02620787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
 gi|169295817|gb|EDS77950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum C str. Eklund]
          Length = 483

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 157/475 (33%), Gaps = 48/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ +    +    +  +N I  DSR I+  + F AI+G   DGH FI  A+ +G
Sbjct: 1   MKVNELLKGLNYEILNGTLELDINAIQYDSRKISESDVFVAIEGFKVDGHKFIEKAISEG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V + ++        I    V +   AL  +A            +I ITG+ GKTT+
Sbjct: 61  AKVIVCSKEVE---IHEEITYIKVQNTRKALAIMASNLYNNPSKDIKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L     +   IG+ +N IG                  +       ++++ + E
Sbjct: 118 TYMIKSILELAGHSTGLIGTISNFIGNEKIKSERTTPESLELHEMFKKMKDKNIEYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + +     + T +   HL      E    AK  +F+  + +     +
Sbjct: 178 V--SSHSLSLDRVYGLEFSQGIFTNLTQDHLDFHKTFENYYRAKLSMFDNAKNSIINIDD 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       +         ++   K AD   +     +  +   +  + +   +   
Sbjct: 236 TYGERV-----LNDVPDSSNKITYSTEKKADLFAKDIVNYARGAEFILCYKSEETHINLS 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L + G        ++   K L       GR +      + GF  +ID ++
Sbjct: 291 IPGIYNVYNALCSAGACLSEGISMEDVKKGLESVV-VPGRCENATKEYDLGFDVIIDYAH 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR I+V G     G         +   +         +
Sbjct: 350 TPDGLE-----NILETARDFTKGRLISVFG----CGGDRDKTKRPIMGKIGSDMSDIAIV 400

Query: 407 SGFH------VLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +KD +   +  +    E               GDV+VV  K 
Sbjct: 401 TSDNPRTEEPSEIIKDVVEGIKKDNYIVVENRKEAIKKAIEIAKKGDVIVVAGKG 455


>gi|294056591|ref|YP_003550249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615924|gb|ADE56079.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 533

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 152/480 (31%), Gaps = 46/480 (9%)

Query: 2   NPLW-TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PL     DL+Q ++           V  +  DSR + P   FFAI G   DG+ +I  A
Sbjct: 36  TPLNPNVGDLIQGLELRLRKGKLDREVTCLITDSRRVVPGALFFAIGGLRTDGNYYIEEA 95

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           V +GA  ++   D+ +      I    V+DV  AL  +A     R      +  +TG+ G
Sbjct: 96  VDRGAVAIITEQDLGSHFP---IDYIQVEDVRMALAVVAREFYGRPDERLGLTGVTGTNG 152

Query: 119 KTTTKEMLTIAL--SSIKKTYACIGSYNNHIGVPLTL-------------ARMPVDVDFG 163
           KTT   ++   +           I        +P                          
Sbjct: 153 KTTVSMLVQHLIGGDDKVGLIGTIRYDIGPRTLPSFRTTPESVDVYALLSQMEDGGCKDA 212

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S  G  +   + +   +AV   +   H+     +E    AK  +F G       
Sbjct: 213 VMEV--SSHGVDQKRVYGLDIDVAVFLNLTQDHIDYHKSMEAYYEAKKGLFIGRAGAVPH 270

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               +       +  +   G     +FG+  +A  +  K +  ++ +  E+   G    V
Sbjct: 271 SAVVNMDCAYGRRLLTELPGDVRALTFGEHADAQVRAEKVRLLADHTEFELYWPGGQATV 330

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V   +G +   N+L  L        +++  +K +  F    GR +               
Sbjct: 331 VSPLLGRYNVSNLLAALATGWAKGFEIEHLVKRIPSFRGVPGRMELIHEKQPYNVLVDYA 390

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A         +    +     G+ I V G     G         L    +L +   
Sbjct: 391 HTDDA-------LKNATGMLREITPGKLIVVFG----CGGDRDRSKRSLMLKATLEHADQ 439

Query: 404 VWLSGFHVLA-----LKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ +  +  +     + + +          V + E           +   GD V++  K 
Sbjct: 440 IFATSDNPRSESVEQIFEDMRLGNETSLDRVEFIEDRKHAISRALDAAQAGDCVLIAGKG 499


>gi|290892185|ref|ZP_06555181.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
 gi|290558308|gb|EFD91826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J2-071]
          Length = 491

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 164/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        + +FG  + ADF+    +  S  S  ++        V   
Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLTTPVGEFTVKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AI  L      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGVKGRFELVNAGQAFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYASNPIFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPHAIIEDMIQGVPDSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460


>gi|332312488|gb|EGJ25583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Listeria monocytogenes str. Scott A]
          Length = 494

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 4   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 64  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 239 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 299 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 359 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 408

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 409 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 463


>gi|229030279|ref|ZP_04186333.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
 gi|228731032|gb|EEL81960.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus AH1271]
          Length = 500

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 160/483 (33%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L  ++            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELADSLLIKDTIGNMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIQIPKIIVKDARYAMAIIASHFYGYPSNKIKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   L+        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLLEKILTDHGFQTGLMGNNGVKVGPKWYPTDINTQEPPILQRNLQMMKNHNTDYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +   AV T +   HL      EE    K       G + + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--TAVFTNLTQDHLDYHGTFEEYKQVKGLLFSRLGNDFST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T       +  +        +    + ++G    AD Q +      +     V       
Sbjct: 241 TDKKIAILNADDPSVEYFKKVTSAEVITYGIHNGADVQAKNITLSPKGIQFLVSTFNGEK 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EINLNLVGRFNVYNALAAITVALVEDIPLTNISDSLSHVKSIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKIITVFG----CGGDRDTKKRSIMGEIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++  L ++ +++Y  E   +       +     D+V++ 
Sbjct: 410 DFVYITSDNPRSEDPQAIMKDIEKGLSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|297569454|ref|YP_003690798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925369|gb|ADH86179.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 550

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/255 (31%), Positives = 124/255 (48%), Gaps = 7/255 (2%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           NP+W+   +L A  G   G   +     +S DSR+I   + F A++G  +DGH F+   V
Sbjct: 31  NPVWSLDQVLLATGGRLWGDRTEAVFRLVSSDSRTIEAGDLFVALRGEKFDGHRFVAEVV 90

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKT 120
           +KGA  +V+ +     +    + V    D L AL  LA   R++ K   ++AITGS GKT
Sbjct: 91  RKGAAGLVLESPPEEPLPVPVVLV---ADTLQALGDLAHYRRMQMKGLKVLAITGSSGKT 147

Query: 121 TTKEMLTIALSSIKKTYA---CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM    +   +         G+ NN IG+PL+L  +     + + E+GM+  GEI  
Sbjct: 148 TVKEMTAAIMEQGRGRQRVLKTRGNLNNLIGLPLSLLAVDAHHQYAVLEMGMNRFGEIAR 207

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  + +P IA IT +  AHL+  + +  +A AK E+F G+    T+ +N DD     L  
Sbjct: 208 MAEIAQPDIACITNVQEAHLAGLTDVAGVARAKGELFHGMRPWTTLVVNRDDPRVWRLAG 267

Query: 238 KSHALGIKTIYSFGK 252
           K     I      G 
Sbjct: 268 KLPQRRITFGRKPGT 282



 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 11/132 (8%)

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+SYNANP+SM AA+  +  +  + +   +A+LGDM E+G    + H  + E ++    
Sbjct: 414 IDDSYNANPSSMLAALETVHNLRRNRK--VVAILGDMLELGSHGPAAHRFIGEQVARLGF 471

Query: 402 SHVWLSGFHVLALKDALPR----SIHVHYSETMDG-----LFLFIQSSLVDGDVVVVKSS 452
            ++   G        A  R    +  V             L    +  L + D+V++K+S
Sbjct: 472 DYLLTVGEFAGETARAARRAGMDAGQVRACLDKKEVGAWLLEATAKGRLKNDDLVLLKAS 531

Query: 453 NSCGFYRLINLL 464
                  +I  L
Sbjct: 532 RGMQMETIIEAL 543


>gi|322805774|emb|CBZ03339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium botulinum H04402 065]
          Length = 483

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 153/473 (32%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + +L++++   +    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MNLNLILKSLEYSFMKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  ++            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSYYKDCTIIKVSDSRKALAIMSSNYYGNPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESHRTTPESIELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    ++ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKESIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  KN D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKITYGLEKNCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      N G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGIPLKTIKEALEDMPSVPGRCEIVTKNYNLGYDVIVDYAHTP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 353 DGLE-----NILNTAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSNLSDIAIITS 403

Query: 409 FHVL------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +KD L           E              + DV+VV  K 
Sbjct: 404 DNPRTEDPKLIIKDVLEGIERDNYIVVEGRRDAIRKAMEIAKENDVIVVAGKG 456


>gi|226356746|ref|YP_002786486.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Deinococcus deserti VCD115]
 gi|226318736|gb|ACO46732.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-MurNAc-pentapeptide synthetase) [Deinococcus
           deserti VCD115]
          Length = 433

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 170/457 (37%), Gaps = 56/457 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                   ++ DSR  +P  AF A+ G    G+ F+  A+  GA  V+ + D+     +L
Sbjct: 16  PEARPARRLTWDSREASPDVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDVP---RAL 72

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +P     +   AL   A   R R+   ++ ITGS GKTT K     AL +         
Sbjct: 73  RVPSQEESNARDALFAWARQERARNSL-VVGITGSAGKTTAKSYAAAALEAHYM-----P 126

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            YN    +   L          + E+G+  +GE+  L  LVRP + V+T+I PAHL    
Sbjct: 127 VYNTMPAIACFLIEYGASDRPLVVEMGIDRIGEMAELVDLVRPDVGVVTSIGPAHLEQLG 186

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            IE IA                          +L+ +   +G +    + ++   +    
Sbjct: 187 SIEGIAR---------------------EKGVILQGRRALVGAQAAPYYSQNPGVESYGF 225

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                + Q                       A        +  +L       ++A +   
Sbjct: 226 GNVTHAGQDLQVTPEGAGFSYGGVDVALPLAAPVQAEAAVLGMVLAQQAGIPLEAAASRL 285

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +      R  ++ G +T+ID++YNA+P +++AA+  L  +     GRRI+VLG M E+
Sbjct: 286 A-QVSLPGGRYRVHPGRYTVIDDAYNASPLAVQAALDALGALP----GRRISVLGRMLEL 340

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G   +  H  +            +  G     L D            T+  L   + + +
Sbjct: 341 GPTERELHAQVGSYARER-ADLTYGVGPFAAELGD--------RAFATVPELLGALTAEV 391

Query: 442 VDGDVVVVKSSNSC------------GFYRLINLLLE 466
            DGDVV++K+S               G   ++N LL+
Sbjct: 392 RDGDVVLIKASRGISWTPEQRAQEGVGLDVVVNALLQ 428


>gi|297623830|ref|YP_003705264.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165010|gb|ADI14721.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Truepera
           radiovictrix DSM 17093]
          Length = 459

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 98/442 (22%), Positives = 160/442 (36%), Gaps = 26/442 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++  S  + P +AFFA+ G    G  +   A+Q GA  +V +                
Sbjct: 27  RGVAFHSARVRPGDAFFALPGASSHGLRYADAALQAGAAFIVSDRPHPRG--------LT 78

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V D    L +L   AR   +  +I +TGS GKT+T+ +L  AL +               
Sbjct: 79  VPDPARLLLQLGRVARAALQGPVIGVTGSAGKTSTRALLAAALGAHATRGNFNTPLALAQ 138

Query: 148 GVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
            +            D  + ELG+ H GE+  L  L RP + V+T IAPAHL     +E +
Sbjct: 139 TLVEAWLEDRTGAHDRLVLELGIDHTGEMDELVELTRPTLGVVTLIAPAHLDGLGSVEGV 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K ++  G+              +  L     A     +  +G          + K+ 
Sbjct: 199 AREKFKLLTGVRHAWVSAQ-----AYPFLTPAQRAALQGRLTVYGLDGRETPTGGEAKRV 253

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +                +   +           L  +++          A +        
Sbjct: 254 TGHFASAAGGGALHALGLRVPLALPSPALAENALCALAVAAHLGVDPAAAAARLQGAVLE 313

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +     G  TL+D++YN+NPAS+                   AVLGDM E+G  S 
Sbjct: 314 PGRLQ-RHQLGALTLLDDAYNSNPASV----RAALTALAALPRPHTAVLGDMLELGAASA 368

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             H  LAE      +  V   G  + AL +A PR++++   +        + + + +   
Sbjct: 369 ELHRALAE--DTAALDAVVAVGPAMRALAEADPRAVYLEAFD-----LEALLALVPERGT 421

Query: 447 VVVKSSNSCGFYRLINLLLEEF 468
           ++VK S      RL   LL  +
Sbjct: 422 LLVKGSRGVRLERLTEALLRRY 443


>gi|254431165|ref|ZP_05044868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
 gi|197625618|gb|EDY38177.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Cyanobium sp. PCC 7001]
          Length = 484

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 127/461 (27%), Positives = 207/461 (44%), Gaps = 16/461 (3%)

Query: 15  QGHSIGIVPQGFVNGISI---DSRSIAPQEAFF---AI---KGPHYDGHDFILHAVQKGA 65
            G  +    +    G+S    D   I P   +    A+   +G   D  + +    Q+GA
Sbjct: 23  GGWWLRPQQRQSYTGVSYLPGD---IQPGHLYVQPSALSWGRGYDKD-RESLQRVKQRGA 78

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             VV++   + +     + V+   D   AL +L  AAR  +   ++ +TG+VGK+TTK  
Sbjct: 79  RAVVLDA--IPAEVPEGLSVYLAPDTSLALAQLGQAARALASHPLVCVTGTVGKSTTKRG 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L I L+   +T+    ++N++ GV LTLA  P D +F + E              +  P 
Sbjct: 137 LAILLARCGRTHESQRNFNHYHGVTLTLADTPKDTEFSVLEFSSDLPRYTLPKALIAAPD 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT I   H   +  +E IA  K+ +F GL+  GT  LN D  +F  + A + + G  
Sbjct: 197 VAVITEIQYDHTDCYPTLEAIADQKSLLFRGLKPEGTAVLNRDSPYFARMHAAARSYGAA 256

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG S  AD  L+   +      +  +   +S+       G H  +N L  L  V  
Sbjct: 257 RVLTFGCSPLADVALQDCSRQRSGWQVRARCLDQSLTYTLPLPGRHDVRNSLAMLAGVVA 316

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +  + A S   P          A+  G   LID+S+++NPAS++AA+  L+  + 
Sbjct: 317 LGQDPNRCLAAFSALQPLPRHCALEHLAVQGGEVRLIDDSFSSNPASLRAALETLALQAE 376

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GRR+ VLG + E+GE S + H  LA+++ L+ I  V+  G H      ALP  +   
Sbjct: 377 GSPGRRLLVLGAIDELGERSDALHASLADLILLHRIDRVYAYGSHTRHTCAALPDHLVAL 436

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI-NLLL 465
           ++     L   + + L   D +V+K S       L+   L 
Sbjct: 437 HTTEARELTQVLMADLQPDDWLVLKFSRHSRLGELLGQALR 477


>gi|255520496|ref|ZP_05387733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-175]
          Length = 513

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GDV+++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDVILIAGKG 460


>gi|56965224|ref|YP_176956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56911468|dbj|BAD65995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 488

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 85/468 (18%), Positives = 146/468 (31%), Gaps = 41/468 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  ++   +       + GI+ +S+++ P + F AI G   DGH FI  A+  GA 
Sbjct: 3   LRHLLDILEYEELYGSDAVDITGITNNSKTVKPGDLFIAIAGYSIDGHKFIDQAIAAGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+   +    IG  S+P   V D   AL   A       ++KA +I ITG+ GKTTT  
Sbjct: 63  AVIGEKE----IGKQSVPYIKVTDSRKALALAAKRFYKNEQNKAIMIGITGTNGKTTTSY 118

Query: 125 MLTIALSSIKKTY-------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           ML   L +   T                  + N  +       ++    D  +     SH
Sbjct: 119 MLKHILETCGHTCSLFGSVQNIVNGQVLPATTNTTMDALELQKQLAASNDQVVIMEVTSH 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 +  +      + T ++  HL     +E    AK  +FE L   G   +     +
Sbjct: 179 ALMQHRVYGI-EFDYGLFTNLSQDHLDYHGSMEAYFGAKLRLFEQLAPAGKAVIQAQGEW 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E   A      +  IY+ G ++          +   Q+ +    +   ++V     G H
Sbjct: 238 GEAFLASLKQRDVPYIYTLGGAEATLQLSNVRIERPMQATLAEDHKAYDLKVPLL--GEH 295

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N  +      +L  +    + AL  F    GR +                 Y     
Sbjct: 296 NVYNAAIAFLTARLLGLNARKILAALEKFPGVPGRFELIHHPKGANIVID----YAHTED 351

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
           +    +    ++S       I V G          +        +S      + L+    
Sbjct: 352 AFYHCLKTAEELSARR---IIHVFGFRG----NRDTSKRQAMVNVSKRFSDFIILTMDDL 404

Query: 408 -GFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            G     ++  L       +                   +GD V +  
Sbjct: 405 NGESFERMRKKLENYQLGENGVVIPDRTSAIAHAWELAENGDWVFITG 452


>gi|117619938|ref|YP_858328.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561345|gb|ABK38293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 494

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 152/459 (33%), Gaps = 42/459 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  V+   D      +L
Sbjct: 17  APALALTDIQLDSRRVGPGCLFVAIRGHQVDGRRFIEQAVAQGATAVLFEEDGEFVAPAL 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P  G+ D+   L++LA     +   K  ++ ITG+ GK+TT  ++    + +      
Sbjct: 77  GVPCLGIPDLPARLSELAGYFYDQPASKLDLVGITGTNGKSTTALLVANWCTLLGGKAGV 136

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVR 183
           +G+  N  G+   L          +                  + +S  G ++     + 
Sbjct: 137 MGTIGN--GLFGELVEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T ++  HL     +E   +AK E+ + + +   +    D    + L A   A+ 
Sbjct: 195 FAAAVFTNLSRDHLDYHGTMEAYGAAKEELLKLVAEPCAVLNADDRLGRQWLAAYPAAVA 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                            +      +    ++     +  +    +G     N+L  +G +
Sbjct: 255 FSVHGPVAGHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGAM 314

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D D  + +     P  GR + +              + +A           L  +
Sbjct: 315 LVLGYDFDELLASAPQLQPVTGRMECFGGGKAPLAVVDYAHTPDA-------LEKALQAL 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H EGR   ++G     G         +   ++  +   V L+  +         +  +
Sbjct: 368 RVHCEGRLWCLVG----CGGDRDRGKRPMMAAMAELHADRVILTDDNPRTEEPARIMADM 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L     V              S     D+++V  K 
Sbjct: 424 VAGLRDPGAVQIEHDRTKAIELALSQASKQDIILVAGKG 462


>gi|146299566|ref|YP_001194157.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium johnsoniae UW101]
 gi|146153984|gb|ABQ04838.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacterium
           johnsoniae UW101]
          Length = 487

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 154/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+       +  I  DSR +   + F AI+G   DGHD+I  A+Q GA 
Sbjct: 4   LKDILYKVTIESVTGSTDIDIQKIEFDSRKVESNDVFVAIRGSLSDGHDYIEKAIQLGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++ +   +       +    V D   AL  +A        +K  ++ +TG+ GKTT   
Sbjct: 64  AIICDK--LPENIQKDVTYIQVKDTNTALAFMAANYFGDPSAKLKLVGVTGTNGKTTIAS 121

Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGI--FELGMS 170
           +L                           + +           +    + G+    + +S
Sbjct: 122 LLFQLFEKAGFKVGLLSTVKIVVDKTEYPATHTTPDSLTINHYLNEMAEAGVTHCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL       E    K   F+ L KT  +  N DD 
Sbjct: 182 SHGIHQKRTEALHFVGGIFTNLSHDHLDYHPTFAEYRDVKKSFFDSLPKTAFVLSNIDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD++ +  +       ++V      ++++     Y
Sbjct: 242 NGSVMLQNTAAKKL----TYALKSYADYRAQILESQLSGLLLKVNDNEVWVKLIGTFNAY 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++       + +          +++AL +    E    R++  ++    T + + Y   P
Sbjct: 298 NVLAIYGTAVELG-------IDSLEALRLLSDLESVSGRFQYIVSDNGITAVVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +  ++ I    E     V       G         +   ++        L+   
Sbjct: 350 DALENVLKTINDIRTKNEQLITVV-----GCGGNRDKTKRPIMAKIATDLSDKAILTSDN 404

Query: 409 ---FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                   + D + + +  H  +                      D++++  K 
Sbjct: 405 PRNEDPEVILDEMEQGVEGHNYKKVLRITDRKQAIKTACQLAQSKDIILIAGKG 458


>gi|315304093|ref|ZP_07874494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
 gi|313627534|gb|EFR96266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria ivanovii FSL F6-596]
          Length = 491

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 91/475 (19%), Positives = 161/475 (33%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI   +        VN I+ DSR + P   F  I G   DGH F   A + G
Sbjct: 1   MKLSELMQAIPVFTGEASSAIEVNQIAQDSRKVNPGTLFICIDGEIADGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++           ++IPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEK-----TVDVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLQGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHSSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG    ADF+    +  S  S  ++   G   ++   
Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKAAADFRASNIQITSHGSTFDLDTPGGHFKLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   +D AI  +      +GR +      +         + 
Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLDNAISTVEAIPGVKGRFELVHAGQDFPVIVDYSHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  IS   E R   V+G     G+  +     +A+V   Y  + V+ 
Sbjct: 356 DG-------LLNVLQTISEFAEKRVFVVVG---CGGDRDKGKRPQMAKVAVKYATNPVFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P +      E       +  S    GDV+++  K 
Sbjct: 406 SDNPRSENPREIIEDMIKGVPENDSYVVHENRRDAIQYAISKAETGDVILIAGKG 460


>gi|254854025|ref|ZP_05243373.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
 gi|258607417|gb|EEW20025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL R2-503]
          Length = 491

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSTFDLRTPIGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GD++++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460


>gi|169349837|ref|ZP_02866775.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
 gi|169293405|gb|EDS75538.1| hypothetical protein CLOSPI_00575 [Clostridium spiroforme DSM 1552]
          Length = 483

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 168/460 (36%), Gaps = 40/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               I     +  I  DSR + P   FF I+G   DGH +I  A+ +GA ++V + +++ 
Sbjct: 6   ELYDIDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYIDDAIFQGAKVIVHSKELLE 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V++ L  LN+++         K  II +TGS GKT    M+  A+S   
Sbjct: 66  KKN--GIIYILVENTLEELNRVSNIFYDYPSNKMKIIGVTGSSGKTVVASMIKDAMSRYC 123

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181
            T         + G          +  +              +  +  S  G        
Sbjct: 124 NTGYIGTISLEYNGFKEDCPYTTPETLYLQRKLYKMNRGGVKVVAMEASSHGLALGRVDS 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +AV+T I   HL      E+   AK ++FE ++ +G + LN DD  F  +K     
Sbjct: 184 VNFSVAVMTNIGAEHLDFHGTREQYILAKQKLFEMIKPSGWVVLNSDDENFLRIK----N 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I ++G +  +D   + ++   + S  ++  +G +  V    +      N+L  + 
Sbjct: 240 STKGKILTYGINNQSDVMAKSFRLFLDHSEFDLSFKGNTYHVSSPVLAKFNIYNVLALVC 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  +  D    ++A+    P EGR +  +   N        +  N         I    
Sbjct: 300 TLIAMGCDEKMVLQAVKEVKPVEGRMELIKAKQNFSVIIDYCQHINN-----YEQIFEFV 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
                 +GR IAVLG     G+ +     ++ +V + Y + HV L+     G +V  +  
Sbjct: 355 DSVRQNKGRLIAVLGAP---GKRNYKMRREIGKVANKY-LDHVILTQLDDRGENVYDICK 410

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +      I      +               D++++  K 
Sbjct: 411 TIQAEIVDISSVIIPSRQVAIEQAIEIACKDDIILILGKG 450


>gi|313680159|ref|YP_004057898.1| UDP-N-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate/d-alanyl-d-alanyl ligase
           [Oceanithermus profundus DSM 14977]
 gi|313152874|gb|ADR36725.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase
           [Oceanithermus profundus DSM 14977]
          Length = 417

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 101/457 (22%), Positives = 169/457 (36%), Gaps = 42/457 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + + G             +  DSR++ P  AF A+ G    G  +   A+ +GA LV+
Sbjct: 3   LARVLGGRP--GPDARPARDLVWDSRAVEPGAAFVALPGTRTHGEAYAEDALARGAALVI 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                             VDD   AL +L    R      +  ++GSVGKT+TKE L   
Sbjct: 61  --------GPQARDRGLQVDDPYRALLRLGRWLRTGFPGVVAGVSGSVGKTSTKEALA-- 110

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   A  G+ N    +      +  D +  + ELG+   GE+  L  L  P + V+
Sbjct: 111 --RALDWPATEGNLNTPPALTRFFWHLSPDAEGAVVELGIDRPGEMDELLELTAPDLGVL 168

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T IAP HL     +E +A  K ++                          H    +   +
Sbjct: 169 TAIAPVHLEGLGSLEAVAREKLKLL------------AASPLRLAHVDLRHWGLPEGTRT 216

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G    A+F     +    ++      +     +    +G   A   L  L    +L  D
Sbjct: 217 YGFDPAANFAGEALELGCAETR----FRYAGRTLRLGVLGRGAALAALAALAAAELLGRD 272

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V  A + L    P  GR +  R          +++SYNA+P +++AA+ VL++      G
Sbjct: 273 VRVAAERLEALKPAPGRLEPLRAGGT----LWLNDSYNASPKAVEAALEVLARCP----G 324

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
            R  VLG M E+G  ++ +H++ AE +           G    A+    P       + +
Sbjct: 325 PRGVVLGTMRELGPEAERWHLEAAERVMAT-ADRALFVGEFAAAMAAGRPG---ATAAAS 380

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           ++     +         V+VK S +    RL+  +  
Sbjct: 381 VEEASERLPDWSRGLASVLVKGSRALALERLLEGIRA 417


>gi|332976917|gb|EGK13739.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 460

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 112/479 (23%), Positives = 190/479 (39%), Gaps = 31/479 (6%)

Query: 1   MNPL--WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQE-AFFAIKGPHYDGHDF 56
           M  L       L   I G  +   PQ  V      S R +      FF  K         
Sbjct: 1   MKELYPMRLGRLASLIGGRLLRGTPQTSVKHAVFGSTRHLREGVVLFF--KPQKN----- 53

Query: 57  ILH---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +     ++Q      V+     +     S  V  V D   AL KL    R +S+A  I +
Sbjct: 54  VEKQLRSLQIKRSAGVIAPKGWSRRIPPSHAVIEVSDPKQALWKLVHWQRAQSRAIFIGV 113

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTTTKEM    LS+  K    + + N +  +P  L  +       + E+GM+  G
Sbjct: 114 TGSAGKTTTKEMAASILSTKYKVLKSVANNNLYSLMPGNLILLHPKHQVVVLEMGMAGFG 173

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            IR    + +P + ++T +  AH+      +  +A AK E+ +GL   GT+ LN DD   
Sbjct: 174 NIRKQCLVAKPSLGIVTNVGEAHVGKLGHSLANVARAKQELIDGLAPKGTLILNADDPGS 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + L  +     +    + G  K A  +  + K                +       G H 
Sbjct: 234 KRLNTRRFRGQV---ITLGIEKPATIRATRVKYTKNGMSFY----IGKVPYHIPVWGRHN 286

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   L        K L  F     R +R +   N   + LI++ YNANP++
Sbjct: 287 IYNALAAIAVAKQLNVPTPWIQKGLQNFPAPRMRLQRIKGIKN---WLLINDCYNANPSA 343

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M A + VL  +   G+ + +AVLGDM  +G+LS   H  + + ++  N S +   G   +
Sbjct: 344 MVAGLKVL--MRVAGKKQSVAVLGDMHSLGKLSLQSHRQVGKFVARLNPSTLITVGPQAV 401

Query: 413 ALKDALPRSIHVHYSETM----DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +      + +     ++    + +  +++ ++ +G V+  K+S      + +N +   
Sbjct: 402 QIAKGASAAGYKGKIRSLPNQPETVANYLRKNIPEGSVLYFKASRKTALEKTVNKIRSR 460


>gi|116873468|ref|YP_850249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742346|emb|CAK21470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 161/477 (33%), Gaps = 47/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++AI  ++        ++ I+ DSR + P   F  I G   DGH F   A + G
Sbjct: 1   MKLSELMEAIPVYTGEASSAIEIDQIAQDSRKVKPGTLFICIDGELVDGHQFAKRAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++           +++PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEK-----TVDVTVPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   +    +    IG+    IG                       +   V   + E
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRNMLMNGVSTAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIF 224
           +  SH      + +     +AV   ++  HL     +EE A AK+      G     +  
Sbjct: 176 V-SSHALVQGRV-YGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNP 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   ++        + +FG  K ADF+    K  S  S  +++    +  + 
Sbjct: 234 KVAVINIDDAESSRMQTATAAHVITFGIKKQADFRASNIKIASHGSTFDLRTPVGNFTLK 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L  +     L   ++ AI  +      +GR +      +         
Sbjct: 294 IKMIGNFSVYNVLAAIATSFALKIPINNAIATVEDIPGVKGRFELVSAGQDFPVIVD--- 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y+  P S+   +  + + +         V   +   G+  +     +A++   Y  + +
Sbjct: 351 -YSHTPDSLLNVLQTIDEFAEKR------VFVIVGCGGDRDKGKRPQMAKIAVDYATNPI 403

Query: 405 WLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + S           +  +   +P S      E       F  +    GDV+++  K 
Sbjct: 404 FTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDAIRFAVNEAETGDVILIAGKG 460


>gi|94495050|ref|ZP_01301631.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
 gi|94425316|gb|EAT10336.1| hypothetical protein SKA58_01115 [Sphingomonas sp. SKA58]
          Length = 1025

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 131/477 (27%), Positives = 205/477 (42%), Gaps = 38/477 (7%)

Query: 5    WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            WT H++  A  G  +   P      G+ I  R S+   +    ++G           A +
Sbjct: 558  WTAHNVAGATGGTWVRSPPEDWRATGLCI-YRPSLQDGDM-VVMRGE--------EDA-E 606

Query: 63   KG------------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
            +G            A  ++ +     +     +PV  V +   A+  L   AR   +  +
Sbjct: 607  RGIPPRQVNRVKPQARGIITSAPQ--AFADAELPVLSVRNNGDAVLALGRYARSMMRGKL 664

Query: 111  IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
            I +TGS GKTT   ML  AL    K      + N   G+   LA +  D    + EL + 
Sbjct: 665  IGVTGSAGKTTMVAMLAQALRPWGKVGTSRLNANLPHGIGWNLASIAWDTPHVVMELAI- 723

Query: 171  HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              G ++    L RP +AV T IA AHL     +  +A  K+ IFEG+    T  LN D +
Sbjct: 724  --GRMKQNAALARPDVAVFTNIAAAHLEFHHDLATVARRKSAIFEGMAAGATAILNADMA 781

Query: 231  FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                ++A + A  +  I S+G++  AD +L   K     +++E +     M       G 
Sbjct: 782  ELARVRALAMAREL-NIVSYGEAPQADIRLISRK----GNFLEAETPSGRMGYHLATPGR 836

Query: 291  HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
            HMA N L  L  +  L+      + AL  F P  GRG      +      LIDE+YNANP
Sbjct: 837  HMAVNSLAVLATLHALSLQPHRGMTALEDFRPLAGRGDVAALCVQGKRILLIDEAYNANP 896

Query: 351  ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ASM AA+ +   +     GRR+A+LG+M E+G  ++ +H DLA + +  +I  V   G  
Sbjct: 897  ASMAAALEL---LGAQAGGRRVAILGEMLELGPGAEGYHADLAPLATGLSIDVVHAVGPL 953

Query: 411  VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   LP      ++  +  L       + DGD+V+VK S+  G + ++  +  E
Sbjct: 954  YARFCADLPPRHRGIHAPDLATLHALWPELIRDGDIVLVKGSHGSGVHEIVRAIQAE 1010


>gi|323340614|ref|ZP_08080866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
 gi|323091737|gb|EFZ34357.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus ruminis ATCC 25644]
          Length = 491

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 149/454 (32%), Gaps = 38/454 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ +  D+R +     F AIKG   DGH FI  A++KGA  +VV  +     G   
Sbjct: 21  DDFEVSSLVSDTRKVEENSIFVAIKGYTVDGHKFIPEAIRKGAKAIVVQEETDDIQG--- 77

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           + +  V++   AL  LA            +I +TG+ GKTT   M+       K     I
Sbjct: 78  VTIVRVNNTNRALAILADKFYGSPSSSMKVIGVTGTNGKTTVTHMIEAIFRDQKDRTGLI 137

Query: 141 GSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+    IG                          +     + +S +  I+     +    
Sbjct: 138 GTMYRRIGEKTYPTANTTPDILTLQKTFAEMKKENVKAAAIEVSSIALIQGRVWGIDVDT 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T     HL     + E A AK+ +F  L  T         +  + +           
Sbjct: 198 AVFTNFTQDHLDYHKTMAEYAHAKSLLFAQLGNTYGNDKTAVINIDDEMGKNFAQDTATQ 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G   +A  +       S+ +  ++++      +    +G     N+L   G     
Sbjct: 258 VLTYGIKNDAMIKASNVNIHSQGTDFDLKVFEDEYHLHVKTVGMFNVYNLLAAFGAAYAN 317

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V   I++L  F   +GR +                + +         ++ L  I+  
Sbjct: 318 GVSVHAIIESLEKFPGVKGRLQLISSDCGISAIVDYSHTPDG-------LLNALETINEF 370

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS- 421
             G    V+G     G+   +    +A++   Y+   ++ S          + D +    
Sbjct: 371 ASGDVYCVVG---CGGDRDATKRPKMAQIAVEYSNHPIFTSDNPRTEDPEKILDQMLSGV 427

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +V              ++   GD++++  K 
Sbjct: 428 PEKNVPVYLDRREAIQAAVNAANPGDIILIAGKG 461


>gi|300765473|ref|ZP_07075454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
 gi|300513784|gb|EFK40850.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Listeria monocytogenes FSL N1-017]
          Length = 491

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 168/475 (35%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A+AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  + ADF+    +  S  S  +++    +  +   
Sbjct: 236 AVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITSHGSAFDLRTPIGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                + 
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I+   E R   V+G     G+  +     +A++   Y  + ++ 
Sbjct: 356 DG-------LLNVLETIAEFAEKRVFVVVG---CGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S      +  A+ +     +P S      E       F  +    GD++++  K 
Sbjct: 406 SDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEAGDIILIAGKG 460


>gi|154685937|ref|YP_001421098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens FZB42]
 gi|166224771|sp|A7Z4E1|MURE_BACA2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|154351788|gb|ABS73867.1| MurE [Bacillus amyloliquefaciens FZB42]
          Length = 490

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 163/477 (34%), Gaps = 47/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                LL  +    +        +  I +DSR +     F  IKG   DGHDF   A + 
Sbjct: 1   MKLTKLLTYLMAEPVQNDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V   ++      + +PV  V     AL+ L+ A   +   +  +I ITG+ GKT+
Sbjct: 61  GAAAIVAEKEL-----DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTS 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDV-DFGIF 165
           T  M+        +    IG+    IG               +  T  +M  +  D  I 
Sbjct: 116 TTHMVDEIFKKAGRQTGLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIM 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223
           E+  SH   +  +       IAV T +   HL     +E+   A +      G       
Sbjct: 176 EV-SSHALSLGRVHGC-DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEK 233

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +   A    +    I ++G   +AD   ++ +  ++ +  E+     + ++
Sbjct: 234 PKRAVLNADDKASAYFEKVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQI 293

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L             DT   AL       GR +               
Sbjct: 294 TVSLVGRFNVYNVLAAAATGIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD-- 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P S++  ++    +    EG+   V+G     G+  ++    +AE+        
Sbjct: 352 --YAHTPDSLENVLNTCKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEP 403

Query: 404 VWLSG----FHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ S        LA+   + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 404 IFTSDNPRSEDPLAILRDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|163790540|ref|ZP_02184969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874143|gb|EDP68218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 492

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 150/459 (32%), Gaps = 46/459 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  ++ D+R + P   F  I G   DGH+    AVQKGA LVV +  +      +
Sbjct: 20  SENLEITKVTQDTREVEPGSLFVCIIGSVQDGHELAKEAVQKGATLVVASEPI-----EV 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++PV  V+D + A+  LA            +I +TG+ GKTT   +L       K+    
Sbjct: 75  AVPVIYVNDTMKAMAILAATFYHHPSQDLRVIGVTGTNGKTTVTHLLDYIFHDHKEKTGV 134

Query: 140 IGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           IG+    IG                    R   D       + +S    ++         
Sbjct: 135 IGTMYRRIGSKVYETKNTTPDSITLQKTLREMQDSGVATCSMEVSSHSLVQGRVWGTDFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           IA+ T ++  HL     +E+ A AK+      G             +F + +        
Sbjct: 195 IAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQQGKPKFAILNFDDPVGRSFEEKT 254

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              ++S+G  + ADF+       +  +   +  + +  EV    +G     N L  +   
Sbjct: 255 AARVFSYGIDQPADFKATDLSITNRGTRFNLNFENRVYEVQLQLVGKFNVSNALAAIAGA 314

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+ + I+++       GR +  +   +         + +         ++VL+ +
Sbjct: 315 YAAGLDLTSVIQSIEKISGVRGRFEIVKGDHDFAVIVDYAHTPDG-------LLNVLNAV 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           +    G    V+G     G         +   ++  N   V  +  +            +
Sbjct: 368 NEIKTGTVFCVVG----CGGDRDRTKRPIMAEIAQQNSDTVIFTSDNPRTEDPIAILHEV 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            D L    +                     D+V++  K 
Sbjct: 424 VDGLEEGTY-QLIPDRREAIQAAIEQANTNDIVLIAGKG 461


>gi|313632492|gb|EFR99506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL N1-067]
          Length = 491

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + G
Sbjct: 1   MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+    +      ++IPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAVIAEKPI-----EVAIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHASNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  +NADF+    +  S  S  ++       ++   
Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFDLTTPAGKFKLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AI  +      +GR +      +         + 
Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I      R   V+G     G+  +     +A++   Y  + V+ 
Sbjct: 356 DG-------LLNVLQTIDEFANNRVFVVVG---CGGDRDKGKRPQMAKIAVQYATNPVFT 405

Query: 407 SGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       +  S    GDV+++  K 
Sbjct: 406 SDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKG 460


>gi|319646105|ref|ZP_08000335.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
 gi|317391855|gb|EFV72652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacillus sp. BT1B_CT2]
          Length = 488

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/466 (18%), Positives = 151/466 (32%), Gaps = 46/466 (9%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              S        +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++
Sbjct: 12  NAPSYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREV 71

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
            A      +PV  +     AL  L+ A   +   +  +I ITG+ GKT+T  M+      
Sbjct: 72  DA-----DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRK 126

Query: 133 IKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIR 176
                  IG+    I                        +   VD  + E+    L   R
Sbjct: 127 AGSRTGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGR 186

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    IA  T +   HL     +EE   A +      G             +  + 
Sbjct: 187 VHGCDYD--IAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDP 244

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A    +    + ++G   +AD      K   + +  ++     S +V    +G     
Sbjct: 245 ASAYFAQVTSAHLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVY 304

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L    I         T  + +       GR +      +          Y   P S++
Sbjct: 305 NVLTAAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVD----YAHTPDSLE 360

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FH 410
             ++    +    EG+   V+G     G+  ++    +A++        V+ +      +
Sbjct: 361 NVLNTCRGL---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSEN 414

Query: 411 VLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            LA+ + +   +   Y       +    F  ++   GDVV++  K 
Sbjct: 415 PLAILNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460


>gi|330973392|gb|EGH73458.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 315

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFRELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++    
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRAGNRN 234


>gi|330895232|gb|EGH27570.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 300

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEHEVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL+  GT  LN +D  F + + ++    
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGTAVLNLEDKAFPIWRKRAGNRN 234


>gi|308173483|ref|YP_003920188.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606347|emb|CBI42718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 490

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 88/461 (19%), Positives = 159/461 (34%), Gaps = 46/461 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++     
Sbjct: 17  NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL----- 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            + +PV  V     AL+ L+ A   +   +  +I ITG+ GKT+T  M+        +  
Sbjct: 72  DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQT 131

Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             IG+    IG               +  T  +M  +  +  I E+  SH   +  +   
Sbjct: 132 GLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVETAIMEV-SSHALSLGRVHGC 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               IAV T +   HL     +E+   A +      G             +  +   A  
Sbjct: 191 -DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYF 249

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +    I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+L  
Sbjct: 250 ERVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      DT   AL       GR +                 Y   P S++  ++ 
Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD----YAHTPDSLENVLNT 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
              +    EG+   V+G     G+  ++    +AE+        ++ S        LA+ 
Sbjct: 366 CKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419

Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
             + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|256425923|ref|YP_003126576.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chitinophaga pinensis DSM 2588]
 gi|256040831|gb|ACU64375.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chitinophaga pinensis
           DSM 2588]
          Length = 488

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 164/477 (34%), Gaps = 47/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +    +       VN +SIDSR++    AF AIKG H DGH FI  A+ +
Sbjct: 1   MKTLRDILYNVSIREVHGSTDTAVNSLSIDSRAVTQGGAFIAIKGVHADGHLFIDKAIAQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +++     +    +  +    V+    A   +A         K  ++ +TG+ GKTT
Sbjct: 61  GAAVIICEE--LPQSLADDLTYVLVNSSATAAGVIAGNYYDNPSHKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167
              +L    S ++     + +  N IG   VP T                VD       +
Sbjct: 119 IATLLFRLFSKLRFHCGLLSTVQNQIGDKVVPATHTTPDAIHLNALLADMVDEGCEYVFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     ++    + + I   HL      +E    K   F+GL  T     N 
Sbjct: 179 EVSSHAVHQQRIAGLKFAGGIFSNITHDHLDYHKTFDEYIKVKKAFFDGLPTTAFALTNL 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       S+     ADF+ +  +       M V  +     ++   
Sbjct: 239 DDKRGNVMLQNTRAKK----QSYSLKTVADFKGKILENNLTGLIMTVNEKEVHFRLI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L   G   +L  D D  ++ALS     EGR      A ++    +    Y 
Sbjct: 292 -GEFNAYNLLAVYGTAILLGQDKDEVLQALSDLSGAEGRFDYITSAKDRIIGIVD---YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +    E     V       G    +    +    +  +   V L+
Sbjct: 348 HTPDALLNVLATIKNLRKGNEQVITVV-----GCGGDRDTAKRPVMAAAATEHSDKVILT 402

Query: 408 GFHVL-----ALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVV--KS 451
             +       A+   +   I VH                   S     D++++  K 
Sbjct: 403 SDNPRSEDPVAIIQQMEAGIPVHQKRKALSITDRKEAIKTAISLANPDDIILIAGKG 459


>gi|328553587|gb|AEB24079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus amyloliquefaciens TA208]
 gi|328911619|gb|AEB63215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Bacillus amyloliquefaciens LL3]
          Length = 490

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 89/461 (19%), Positives = 159/461 (34%), Gaps = 46/461 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  I +DSR +     F  IKG   DGHDF   A + GA  +V   ++     
Sbjct: 17  NDFHDPDITSIEMDSREVRKGSLFVCIKGYTVDGHDFAQKAAENGAAAIVAEKEL----- 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            + +PV  V     AL+ L+ A   +   +  +I ITG+ GKT+T  M+        +  
Sbjct: 72  DVDVPVIIVRRSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTTHMVDEIFKKAGRQT 131

Query: 138 ACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             IG+    IG               +  T  +M  +  D  I E+  SH   +  +   
Sbjct: 132 GLIGTMYIKIGDETFPVKNTTPESVTLQKTFKKMNDEHVDTAIMEV-SSHALSLGRVHGC 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               IAV T +   HL     +E+   A +      G             +  +   A  
Sbjct: 191 -DYDIAVFTNLTQDHLDYHKTMEDYRQAKSLLFSQLGGSFNHEKPKRAVLNADDKASAYF 249

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +    I ++G   +AD   ++ +  ++ +  E+     + ++    +G     N+L  
Sbjct: 250 ERVTAAHILTYGIENDADVMAKQIEISAQGTSFELVTPKGTKQITVSLVGRFNVYNVLAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                      DT   AL       GR +                 Y   P S++  ++ 
Sbjct: 310 AATAIAAGLPFDTITSALEELQGVRGRFELVNHNQPFPVVVD----YAHTPDSLENVLNT 365

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
              +    EG+   V+G     G+  ++    +AE+        ++ S        LA+ 
Sbjct: 366 CKDM---TEGKLFVVVG---CGGDRDKTKRPKMAEIAVRIADEPIFTSDNPRSEDPLAIL 419

Query: 416 DALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
             + R +   Y       +    F  ++   GDVV++  K 
Sbjct: 420 RDMERGVEGTYYHSIANREQAIFFAIANAKKGDVVLIAGKG 460


>gi|229196428|ref|ZP_04323175.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587065|gb|EEK45136.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 300

 Score =  156 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 135/298 (45%), Gaps = 10/298 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS+++     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKLEEVIDGEGLYESFHHLEIHGVCIDSKNMKEGNLFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAVASLWKKSYG--TPPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G+IR L+ + 
Sbjct: 126 KDIIGSILSSTYRVHKTKGNFNSQIGLPLTILEMERNTEFLILEMGMSEKGQIRNLSRIA 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P +A+IT I  +HL      EEIA AK EI +GL   G    N D+     L +++  +
Sbjct: 186 QPDVAIITMIGQSHLKTLGSREEIAKAKFEIIDGLHDDGLFLYNGDEP----LLSQNINM 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 SFG+    D      +        ++       +V  HG    +   + + +
Sbjct: 242 LGIESKSFGRKYTNDLFPTNVQLDGYGVHFKLNHTKIQYDVPLHGKHNILNAIVGIAV 299


>gi|188997127|ref|YP_001931378.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932194|gb|ACD66824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 497

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 87/482 (18%), Positives = 164/482 (34%), Gaps = 49/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L       I    +  + GI+ +S+ +    AFFAIKG   DGH+FI  A++ 
Sbjct: 1   MKLLKEIL--TDEKIIYGNQETVIEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58

Query: 64  GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           GA ++ +     V S+   +I V   D+   +L   +         K  +IAITG+ GKT
Sbjct: 59  GASVIFIEDEKYVESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-------IGVPLTLARMPVDVDFGIFELGM---- 169
           TT  +L             IG+ N          G               + + G     
Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S     ++  +  + H  + T +   HL     +E    AK  IFE +++     + 
Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRIFEQIDEFNKEAIY 238

Query: 227 YDDSFFEL------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +   E              +    I ++GK  + DF++  ++    ++    + +   
Sbjct: 239 SINVDDEYGRRILDYLKNHLKVNDDKIITYGK-TSEDFKILDYRLSLFETEFSYKYKDTL 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G     N+   +  +     D+    +      P +GR   +     QGF  
Sbjct: 298 SKIKTKLRGVFNIYNLSAAVSFLIKDGFDLKFLEEKALHLKPIKGR---FEVIEGQGFIV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID ++  +        ++L  ++   E R IAV G     G         L    +   
Sbjct: 355 VIDYAHTPDALE-----NILKSLNEIKENRIIAVFGA----GGNRDKTKRPLMGETAEKL 405

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +            + D +     V              S   + D++++  
Sbjct: 406 SDIVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|330950228|gb|EGH50488.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 328

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 83/240 (34%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G       +G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDALLVGG--DCSFSGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           EML   L +     A  G+ NN +GVPLTL  +  +    + ELG S +GEI +   L +
Sbjct: 115 EMLASILRTRGPVLATRGNLNNELGVPLTLLELAPEYTSAVIELGASRVGEIAYTVSLAK 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+A+IT    AH+  F G + I  AK EI EGL   GT  LN +D  F + + ++    
Sbjct: 175 PHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLGAGGTAVLNLEDKAFPIWRKRAGDRN 234


>gi|326391687|ref|ZP_08213212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992265|gb|EGD50732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 483

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 172/477 (36%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D   A+ K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S               IAV T ++  HL     +EE A  K+++F+  +    I ++
Sbjct: 177 V--SSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKSKLFKMAKSASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +   +    +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIKDFAYVMAKDIRNSLDGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+ +ID ++
Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFELVETGKDFYVIIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453


>gi|281356124|ref|ZP_06242617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317493|gb|EFB01514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Victivallis vadensis
           ATCC BAA-548]
          Length = 491

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/451 (18%), Positives = 147/451 (32%), Gaps = 45/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P + F AI G  YDGHDFI  A   GA ++V   ++   +         V 
Sbjct: 27  VRNDSRKVLPGDIFVAIPGAVYDGHDFITKAAAAGAQVIVHERELTDYLEKP--TYIRVT 84

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   A  +L             +I +TG+ GKTTT  ++     +  +    I +     
Sbjct: 85  DSSRAYARLVREFCDCPDEYVKLIGVTGTNGKTTTAFLVEHIFRNAGEPCGLISTVEYRD 144

Query: 148 GV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G                 PL        +     EL  SH  +     +  R   A+ T 
Sbjct: 145 GKITAPATHTTPEAGILFPLLATMRRNGMRAAAMEL-SSHALQQGR-INGARFRTAIFTN 202

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E    AK   F  L       +   D  F    A+  +   +   +FG
Sbjct: 203 LTGDHLDYHGDMEHYYQAKKLFFTRLLGLDGTAVINIDDEFGKRLARDISGRQQV--TFG 260

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +  AD+ +   +  +E S   +  + ++ +V  + IG H   N+   +          +
Sbjct: 261 MTPAADWVISDVELGAEGSKFRLTGEEQAFDVATNLIGTHNIHNLTGAILAALDYGLKPE 320

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               AL+      GR + +R   +        +  + + A      +VL  +    +G+ 
Sbjct: 321 AISHALNRPIRVPGRLEPFR--ASPEGPVFYVDYAHTDDA----LKNVLEILRKITKGKL 374

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422
           IAV G     G              +     H+ L+  +            +   +P   
Sbjct: 375 IAVFGA----GGDRDRSKRPRMGKAAAQYADHLILTSDNPRSEEPQKIIDEIAAGIPAGT 430

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           +    GDVV++  K 
Sbjct: 431 SFETEPDRAQALRRAVAVARPGDVVLIAGKG 461


>gi|289435379|ref|YP_003465251.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289171623|emb|CBH28169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 491

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 161/475 (33%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +    P   V+ I+ DSR +     F  I G   DGH F   A + G
Sbjct: 1   MKLNELMQAIPVFTGEASPAIEVSQIAQDSRKVNLGTLFICIDGEIVDGHQFAKKAEELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  VV    +      ++IPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAVVAEKPV-----DVTIPVIYVRDSKRAMAMLANYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLLRGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S    ++   +     +AV   ++  HL     +EE A AK+      G     +    
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYHTSNPKI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + +FG  +NADF+    +  S  S   +       ++   
Sbjct: 236 AVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFNLTTPAGKFKLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AI  +      +GR +      +         + 
Sbjct: 296 MIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFPVIVDYSHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++VL  I      R   V+G     G+  +     +A++   Y  + V+ 
Sbjct: 356 DG-------LLNVLQTIDEFANKRVFVVVG---CGGDRDKGKRPQMAKIAVQYATNPVFT 405

Query: 407 SGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       +  S    GDV+++  K 
Sbjct: 406 SDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILIAGKG 460


>gi|10566745|dbj|BAB15947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-di aminopimelate
           [Corynebacterium glutamicum]
          Length = 293

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 124/289 (42%), Gaps = 39/289 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  + T  ++   + G   G       V+  +  DSRS+ P   F A+ G   DGHDF  
Sbjct: 1   MITM-TLGEIADIVGGRLTGGAQEDTLVSSSVEFDSRSLTPGGLFLALPGARVDGHDFAA 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL---------------------GALNK 97
            A++KGA  V+   +       + +P   V  V                       AL++
Sbjct: 60  TAIEKGAVAVLAARE-------VDVPAIVVPPVKIQESNADIYAHEPDGHGAAVVEALSR 112

Query: 98  LAVAARL----RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           LA           +  ++AITGS GKT+TK+ +   L     T A  GS+NN +G+P T+
Sbjct: 113 LARHVVDICVAGHQLNVVAITGSAGKTSTKDFIATVLGQDGPTVAPPGSFNNELGLPHTV 172

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R   D  + + E+    +G I+ LT +  P IA +  +  AHL  F   E IA AK EI
Sbjct: 173 -RCTTDTKYLVAEMSARGIGHIKHLTEIRPPRIAAVLNVGHAHLGEFGSRENIAQAKGEI 231

Query: 214 F---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
                  +  G   LN DD F   +  ++ A  +      G++K +D+ 
Sbjct: 232 IEALPSKKTGGVAVLNADDPFVARMAPRTKARVVWFTTDAGQAKKSDYW 280


>gi|52080120|ref|YP_078911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52785494|ref|YP_091323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|81385639|sp|Q65JY4|MURE_BACLD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52003331|gb|AAU23273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus licheniformis ATCC 14580]
 gi|52347996|gb|AAU40630.1| MurE [Bacillus licheniformis ATCC 14580]
          Length = 488

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 150/462 (32%), Gaps = 46/462 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
                   +  I +DSR +     F  IKG   DGHD+   A +KGA  +V   ++ A  
Sbjct: 16  YAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAEKGAAAIVAEREVDA-- 73

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  +     AL  L+ A   +   +  +I ITG+ GKT+T  M+          
Sbjct: 74  ---DVPVIIIRHTKRALAVLSDAFYGQPTKQLRLIGITGTNGKTSTSHMVEEIFRKAGSR 130

Query: 137 YACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
              IG+    I                        +   VD  + E+    L   R    
Sbjct: 131 TGLIGTMYTKIHDETFEAKNTTPESVTLQKTFRKMVDQGVDTAVMEVSSHALHMGRVHGC 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                IA  T +   HL     +EE   A +      G             +  +   A 
Sbjct: 191 DYD--IAAFTNLTQDHLDYHETMEEYKHAKSLLFSQLGGSFNHETPKWAVLNADDPASAY 248

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    + ++G   +AD      K   + +  ++     S +V    +G     N+L 
Sbjct: 249 FAQVTSAHLLTYGIQNDADVMAENIKMAPKGTTFDLVTPKGSAQVTIPLVGLFNVYNVLT 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              I         T  + +       GR +      +          Y   P S++  ++
Sbjct: 309 AAAIAIAADIPFATITEGIEGLKGVRGRFELVDAGQDFPVIVD----YAHTPDSLENVLN 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
               +    EG+   V+G     G+  ++    +A++        V+ +      + LA+
Sbjct: 365 TCRGL---TEGKLFVVVG---CGGDRDKTKRPKMAKIAVDLADEPVFTADNPRSENPLAI 418

Query: 415 KDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            + +   +   Y       +    F  ++   GDVV++  K 
Sbjct: 419 LNDMEEGVKGAYYHSIVNREQAIFFAIANAKKGDVVLIAGKG 460


>gi|315223501|ref|ZP_07865357.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
 gi|314946536|gb|EFS98528.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Capnocytophaga ochracea
           F0287]
          Length = 486

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 150/476 (31%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +   V    +  +  DSR +     F AI G   +GH++I  A++ G
Sbjct: 1   MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKVEKGSMFVAITGTQSNGHEYIDQAIRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V     +       +    V +   AL  +A         K T++ +TG+ GKTT 
Sbjct: 61  ANAIVCEQ--LPQQPLPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168
             +L                           + +           + + V+ G+    + 
Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +  T  ++    + T +   HL            K   F+ L  T    +N D
Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++    +AD++    +   +   + +       +++    
Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRINQHEVWTKLI---- 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L      ++L  D    +  +S   P  GR +    A            Y  
Sbjct: 291 GEFNAYNLLAVYATATLLGIDELETLTLISAIEPVAGRFQYAVSATGVITIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  ++ I  H E     V       G         +   ++     +V L+ 
Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401

Query: 409 FHVLA-----LKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        +   + + +   +                +  +   GD++++  K 
Sbjct: 402 DNPRNEEPETILSEMEQGVQPQHFYKVQNITDRRQAIQSVCKNAQKGDIILIAGKG 457


>gi|16801210|ref|NP_471478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria innocua Clip11262]
 gi|21362704|sp|Q929X9|MURE_LISIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16414658|emb|CAC97374.1| murE [Listeria innocua Clip11262]
          Length = 491

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                  K   +        I +FG  + ADF     +  S  S  +++       +   
Sbjct: 236 AVLNADDKESVRMQTATAAHIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFALKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   V  AI  +      +GR +      +          Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S+   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       +  +    GDV+++  K 
Sbjct: 406 SDNPRSEDPHAIIEDMIQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKG 460


>gi|187779891|ref|ZP_02996364.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
 gi|187773516|gb|EDU37318.1| hypothetical protein CLOSPO_03487 [Clostridium sporogenes ATCC
           15579]
          Length = 482

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 161/499 (32%), Gaps = 54/499 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L++++   +    +  +  I  DSR +   + F  I+G   DGH +   A   G
Sbjct: 1   MDLSLILKSLEYSFVKED-KKEIEKIEYDSRKVKEGDLFVCIEGYATDGHKYAKKAYDNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V   D+          +  V D   AL  +A            II ITG+ GKTT+
Sbjct: 60  AKVIVCEKDLEDLSCYKDCTIIKVPDSRKALAIMASNYYGTPSKHIKIIGITGTNGKTTS 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L         +G+  N+IG               +       + E      + 
Sbjct: 120 TFMMKAILEKAGYKVGLLGTIANYIGNKKIESNRTTPESLELQKLFKDMVDEKVDYCVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S         + V    A+ T +   HL      E   ++K  +F+  + +     +  
Sbjct: 180 VSSHSLYLDRVYGVEFKEAIFTNLTQDHLDFHKTFENYFNSKLILFKNAQNSVINIDDSY 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K     +    ++G  K+ D +       S     +   + +   +  +  
Sbjct: 240 G-------EKVLKKALGNKVTYGVEKSCDLKAENLHMHSRGVEFDTIFKNEKETIALNIP 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L ++G   +    + T  +AL       GR +      + G+  ++D ++  
Sbjct: 293 GKYNIYNALGSIGACLLEGISLQTIKEALGDIS-VPGRCEIVTKNYDLGYDVIVDYAHTP 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L+      +GR I+V G     G         +   +         ++ 
Sbjct: 352 DGLE-----NILATAREFTKGRLISVYG----CGGDRDRTKRPIMGKVGSDLSDIAIITS 402

Query: 409 FHVL------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS------- 451
            +         +KD L      +    E              + DV+VV  K        
Sbjct: 403 DNPRTEDPSLIIKDVLEGIEKDNYIVVEGRRDAIKKAMEIAKENDVIVVAGKGHEDYQIL 462

Query: 452 -SNSCGFY--RLINLLLEE 467
              +  F    +I  L++E
Sbjct: 463 KDRTIHFDEREVIEELIKE 481


>gi|313622986|gb|EFR93282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL J1-023]
          Length = 491

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFADRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                  K   +        + +FG  + ADF     +  S  S  +++       +   
Sbjct: 236 AVLNADDKESVRMQTATAAHVITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFSLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   V  AI  +      +GR +      +          Y
Sbjct: 296 MIGNFSIYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S+   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       +  +    GDV+++  K 
Sbjct: 406 SDNPRSEDPHAIIADMIQGVPGSDSYVVHENRRDAIRYAINMAEAGDVILIAGKG 460


>gi|313617979|gb|EFR90139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria innocua FSL S4-378]
          Length = 491

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 162/475 (34%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+QAI  ++        VN I+ DSR + P   F  I G   DGH F   AVQ G
Sbjct: 1   MKLKELMQAIPVYTGEASAAIEVNQIAQDSRKVQPGTLFICIDGEIVDGHQFANRAVQLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +S+PV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSVPVLYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A AK+ +F  L  +  +     
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGNSYNLSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                  K   +        I +FG  + ADF     +  S  S  +++       +   
Sbjct: 236 AVLNADDKESVRMQTATAAHIITFGIKEPADFSASNIQITSHGSTFDLKTPVGDFSLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   V  AI  +      +GR +      +          Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALRIPVINAIATVESIPGVKGRFELVNAGQDFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S+   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 SHTPDSLLNVLQTIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405

Query: 407 SG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +   +P S      E       +  +    GDV+++  K 
Sbjct: 406 SDNPRSEDPHAIIEDMTQGVPGSDSYVVHENRRDAIRYAVNMAEAGDVILIAGKG 460


>gi|150026099|ref|YP_001296925.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
 gi|149772640|emb|CAL44123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacterium psychrophilum JIP02/86]
          Length = 486

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 149/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L  +    +       V+ I  DSR I   + F AI+G   +GH+FI  A+  GA 
Sbjct: 3   LKEILYKVALEVVHGSTDVAVHNIHFDSRKIQSNDVFVAIRGSVSNGHEFIDKAIALGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +V +T  + +     I    V D   AL  LA         K  ++ +TG+ GKTT   
Sbjct: 63  AIVCDT--LPTNLLSQITYVKVKDTNAALAYLATNFYDNPSQKLQLVGVTGTNGKTTIAS 120

Query: 125 MLTIALSSIKKTY---------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L                         +      P            V+       + +S
Sbjct: 121 LLYQLFKKAGFKVGLLSTVKILVDEIEHKATHTTPDSLTINYYLDKMVEAGCQYCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  ++    V T ++  HL       +    K   F+ L K      N DD 
Sbjct: 181 SHGIHQKRTEGLQFVGGVFTNLSHDHLDYHPTFSDYRDVKKSFFDNLPKNAFALSNIDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    S+     AD++    +       +++  Q   + ++     Y
Sbjct: 241 NGAVMMQNTKARKL----SYALKTYADYKAIIIENQLSGLLLKINEQEVWVRLIGTFNAY 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++     + + +           ++ L +    E    R++  +++   T I + Y   P
Sbjct: 297 NLLAIYGVAIELGIE-------KLEVLRLLSELESVSGRFQFIVSKQNITAIVD-YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +S ++ I    E     V       G         +   ++        L+   
Sbjct: 349 DALENVLSTINDIRTRNEQLITIV-----GCGGDRDKTKRPIMANIASQMSDKAILTSDN 403

Query: 409 ---FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
               +   +   +   I     +                      D++++  K 
Sbjct: 404 PRTENPETIIAEMEAGITAVNYKKYMSIIDRKQAIKTACQLAQPNDIILIAGKG 457


>gi|323142007|ref|ZP_08076858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
 gi|322413539|gb|EFY04407.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Phascolarctobacterium sp. YIT 12067]
          Length = 495

 Score =  155 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 47/477 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  +    +       +  ++ DSR++     F  +KG   DGH F+  A +KGA 
Sbjct: 5   LASLLALLPQAEVIGSADKVITDVTADSRAVVAGSLFICLKGATVDGHKFLTMAAEKGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             +V    V +     + +  V D   A+  +          K  +I +TG+ GKTT+  
Sbjct: 65  AALVED--VPAEVPQGVTLIKVADTREAMELVTPYFYDYPGRKLRMIGVTGTNGKTTSTN 122

Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLT-------LARMPVDVDFGIFELG 168
           ++ + L                       +H   P          A      D+ + E+ 
Sbjct: 123 IIRLILRKAGYKVGLIGTINIMINDEITESHNTTPDVVDLQKTLYAMCCAGCDYCVMEV- 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +    AV+T I   HL     +E    AK+ +FE L        N  
Sbjct: 182 -SSHALALKRVAGIEYDCAVLTNITQDHLDFHKTMENYRDAKSLLFEHLTDGSKPNKNAV 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +   A         + ++G+  + D     +    +   + +      M++     
Sbjct: 241 FNMDDPSSAIIRERTKANVLTYGEGHDNDIYPLSFTVEPKHMQLLLHTPVGEMDLELKIT 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +G +     D D     L  F    GR +                + + 
Sbjct: 301 GEFNVYNVMGVIGAMLAENIDKDIIGSVLDGFDGVPGRFQLVEAGQPYTVIVDYAHTPDG 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL        G+   V G     G    +    L   L+L    ++ ++ 
Sbjct: 361 -------LENVLKTARSITRGKLWVVFG----CGGDRDNKKRPLMGALALELADNIVVTS 409

Query: 409 FHVL---------ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +  AL   P   HV           +  +   D DV+++  K 
Sbjct: 410 DNPRTEDPELIIDEIFTALQNVPAGKHVTRLSDRREAICYALAEAADNDVILIAGKG 466


>gi|187735159|ref|YP_001877271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425211|gb|ACD04490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 501

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/483 (18%), Positives = 152/483 (31%), Gaps = 49/483 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    DL        +   PQ  ++ +  DSR I P   + A+KG   DGH+FI  A
Sbjct: 1   MKLLTLLKDLPSHT----LTGSPQVKISHLECDSRRILPGSCYIALKGTRADGHEFIPEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVG 118
           +++GA  VV             +    V+D   A  L   A   R     T+I +TG+ G
Sbjct: 57  IRRGACAVVAEMPCTQEAREAGVSWVEVNDSRLAVSLMGAAWNGRPSRHMTMIGVTGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFG 163
           KTTT  +    L         IG+     G               +   L  M  +   G
Sbjct: 117 KTTTAYIAHSLLKQSWLRAGLIGTIAYDNGEEITPSTHTTPGPLELEHLLKEMYENGCRG 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEK 219
           +  + +S     +     +  ++ + T +   HL     +E      A    ++ +  + 
Sbjct: 177 VS-MEVSSHALDQERVAGINFNVGIFTNLTQDHLDYHHTMENYFQAKAKLFEQMAQDTKS 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   +       +      G  T+ ++G +  ADF++      ++ S  E++ +GK
Sbjct: 236 RRKPVAVINIDDAYGRRLAEMFSGRMTVKTYGSALGADFRMLVHHATAKGSEYELEYKGK 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S  V    IG     N L  L  V      V  AI  L       GR + +        F
Sbjct: 296 SYLVRVPLIGKFNMYNSLAALAAVICAGIPVRDAIANLQNIPQVPGRLELFTHPGGAQIF 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A         +V   +      R I V G     G         L    +  
Sbjct: 356 IDYAHTPDA-------LENVCKTLKELCSRRLITVFG----CGGDRDRGKRPLMGAAAAR 404

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
                 ++  +  +         +   +P                        GD+V++ 
Sbjct: 405 LSDACIVTSDNPRSEEPLSIISQIAAGMPEG-RYAIIPDRARAIATAIEQARLGDIVLIA 463

Query: 450 -KS 451
            K 
Sbjct: 464 GKG 466


>gi|307266532|ref|ZP_07548065.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918451|gb|EFN48692.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 483

 Score =  154 bits (389), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/477 (18%), Positives = 170/477 (35%), Gaps = 54/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ +    I   P   ++G+  DSR    +  F AIKG   DG  ++  A++ G
Sbjct: 1   MKLIDILKGVNCE-IKGDPNIDISGVCYDSRKSKNKYLFIAIKGFKTDGIFYVEEAIKNG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV + ++    G   I    V+D   A+ K+A         K T+I +TG+ GKT+ 
Sbjct: 60  AVAVVTDREIKEYPG---ITTVLVEDARAAMAKIASNFYNNPTSKLTLIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ML   L         +G+  N IG                  L    +   V + + E
Sbjct: 117 TYMLKAILERQNNKVGLVGTIQNMIGDEVIPSVHTTPESLDLQELFSIMVNKGVKYVVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S               IAV T ++  HL     +EE A  K ++F+  +    I ++
Sbjct: 177 V--SSHSLALNRVDECEFDIAVFTNLSQDHLDFHQNMEEYAKTKGKLFKMAKSASVINID 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   +         + ++G    A    +  +        +VQ++ K  E+   
Sbjct: 235 ------DKYSSMMIESSKAKVLTYGIKDFAYVMAKDIRNSLSGVKFKVQIEDKKEEISLK 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L   + +  +ALS       +G+       + F+ +ID ++
Sbjct: 289 IPGIFSVYNALAAITVADFLGISLRSVREALSQ---VTVKGRFELVETGKDFYVIIDYAH 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        +++  +  +  GR+I + G     G         L   ++        L
Sbjct: 346 TPDG-----IQNIMEALKEYKTGRKILLFGA----GGDRDKTKRPLMGEVAGKYADFCIL 396

Query: 407 SGFHVLA---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +++ + + +      E       +  ++    DV+++  K 
Sbjct: 397 TSDNPRSEDPREIISQIEEGIKKTNCPYVVIENRKEAISYALTNAQKDDVIILAGKG 453


>gi|23099453|ref|NP_692919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316003|sp|Q8CZE4|MURE2_OCEIH RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase 2; AltName:
           Full=UDP-MurNAc-tripeptide synthetase 2
 gi|22777682|dbj|BAC13954.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 492

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 153/460 (33%), Gaps = 41/460 (8%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           IG +P   ++ IS +SR +     F  I G   DGH+F+  AV+ GA  +V   ++  ++
Sbjct: 16  IGKLPNT-ISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREV--NL 72

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS---- 132
            +    +  V D   A+  LA           TI  +TG+ GKTT   ++   L+     
Sbjct: 73  DTNKATLIIVPDTNKAIATLAATFYKHPSHNLTIYGVTGTNGKTTVTTIINHLLTDNELS 132

Query: 133 ---------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHL 181
                             S N    V      +    + G+  + M  S  G  +     
Sbjct: 133 TALIGTNGFQINKDIYSSSNNTTSDVLTNQHMLYEAKNQGVTHVAMEVSSHGLEQGRLWG 192

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +A  T ++  HL     +EE A+ K ++F  L            +  +        
Sbjct: 193 IDFTVATFTNLSHEHLDYHGSMEEYAATKVQLFSSLAIQPNKQKIAVLNRDDNWYEYFQK 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I S+G  + ADF+    K   +++  E+     S +V    +G     N+L  + 
Sbjct: 253 RTPVQIVSYGIYEQADFRATAIKYYKDRTSFELLTPEGSFQVQTKLMGEFNVYNVLAAIA 312

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V +  +   T +       P    G+  +   +      ID ++  +          ++
Sbjct: 313 SVYVKESIPLTDLVKSIEGTPT-PPGRMEKLESSGNRHIYIDYAHTPDA-----LTKAIN 366

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKD 416
            + P  + + I V+G     G         L    +     +V L+           +  
Sbjct: 367 SLLPFKQNKLIVVVGT----GGDRDKSIRPLLAKAASV-ADYVILTINDPRHEDPNNILQ 421

Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L   +        E          +     D++++  K 
Sbjct: 422 DLENGMLHHQYTCLENRKEAIREAINYSSPNDIILIAGKG 461


>gi|189464535|ref|ZP_03013320.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
 gi|189438325|gb|EDV07310.1| hypothetical protein BACINT_00877 [Bacteroides intestinalis DSM
           17393]
          Length = 482

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KGA 
Sbjct: 3   LSELLKAIQPIQIIGSTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHAYIPAAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
            V+     V       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AVLCED--VPEEKKEGITYIQVKDSEEAVGKIATTFYDDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L              + + +Y +   +P                   D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQAIPTEHTTPDPITLNQLLGQMADSGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +R    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 181 SHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKGAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ +  +   E     + L   + E+  H IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEG----MLLDFNNHELAVHFIGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS   P  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLQPVAGRFDAVRSPKGITAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKIITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDKDDMQKTISIADRREAIKTACMLAQPGDVILVAGKG 457


>gi|293376257|ref|ZP_06622500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325845135|ref|ZP_08168444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|292645149|gb|EFF63216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|325488800|gb|EGC91200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 481

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 158/460 (34%), Gaps = 39/460 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
              +     V GI+ D+R + P + F  IKG   DGH F   A + GA  +V        
Sbjct: 6   LFNVEQDFEVTGIATDNRQVKPGDLFVCIKGYTVDGHRFAKSAEEAGAVAIVCE----YE 61

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI----ALS 131
           + +++IP   V D    L +LA     +   K  +  +TG+ GKTTT  +L         
Sbjct: 62  LENIAIPQIIVKDTAVELPRLAHLMFNKPTEKLNLFGLTGTNGKTTTAYILEHLLTGFEG 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHL 181
            +         Y NH   P      P+ +     E+           +S           
Sbjct: 122 HVGYIGTNGIRYANHYIEPKNTTPEPLSLQRIFHEMVEEGVKQVAIEVSSHALELHRVDY 181

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +  +A+ T + P HL     +++   AK ++FE L   G   +N DD + E L  +   
Sbjct: 182 CQFKVALFTNLTPEHLDFHPTMDDYFEAKYKLFEMLTPDGHGIVNLDDEYGEKLVNR-LK 240

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +Y++G   +ADF+       S  +  ++       EV    +G     N L  + 
Sbjct: 241 ESQTAVYTYGIESDADFKAEDIHMTSFGTSFKLTCPEGIYEVQTPLLGRFNVYNALGAMA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                +  ++  I  +    P +GR            FT+I +  +           VL 
Sbjct: 301 SAYSASMPMEQIIALIKTLSPVDGR---MEIINEGQDFTVIVDYAHTPDG----VEKVLE 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            ++   +     V+G     G+  ++    +A++   Y    ++ +        + + + 
Sbjct: 354 FVTGIKQNGVKVVIG---CPGDRDRTKRPVIAKLSVDYADDVIFTTDDPHSEDPVDILNE 410

Query: 418 LPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +   I                   +     D+V++     
Sbjct: 411 MVSGIKPMNYEVIVDRIEAIETAINKAQKNDIVLIAG-RG 449


>gi|86140627|ref|ZP_01059186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
 gi|85832569|gb|EAQ51018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leeuwenhoekiella blandensis MED217]
          Length = 487

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 155/473 (32%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+   P   VN I  DSR +   + F AI G   DGHDFI  A ++GA 
Sbjct: 4   LKDILYKVTLESVTGNPNVPVNAIHFDSRKVGLNDVFVAISGTQSDGHDFIKKAEEQGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++     +       I      D   AL  +A            ++ ITG+ GKTT   
Sbjct: 64  AIICEQ--MPEDFVNGITYVQTSDTAQALAVMASNYYENPSENLKLVGITGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170
           +L    +        + +    +G                     M  +       + +S
Sbjct: 122 LLHQLFTKAGFKAGLLSTVKVLVGDEEFPATHTTPDSLTINKYLAMMNEAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL       E    K   F+ L KT     N DD 
Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHKTFAEYRDVKKSFFDNLPKTAFALSNIDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +++   + A  +    ++     AD++ +  +       ++V  Q   ++++      
Sbjct: 242 NGQVMLQNTRAKKV----TYALKSFADYRAQILENQFTGLLLKVNDQEVWVKLI------ 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             + N    L I +       + ++AL           R++  ++    T I + Y   P
Sbjct: 292 -GSFNAYNVLAIYAAAELLGLSQLEALQYLSELTSVSGRFQYMISAKKITAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E     V       G+  ++    + ++ +  +   V+ S   
Sbjct: 350 DALKNVLETINDIRTKNEELITVV----GCGGDRDRTKRPKMGKIAAALSTKVVFTSDNP 405

Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +                +             + D++++  K 
Sbjct: 406 RSEDPDTIIEEIEAGVEPVDYKKTVAITSRKQAIKAACQMAEENDIILIAGKG 458


>gi|163847357|ref|YP_001635401.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222525202|ref|YP_002569673.1| alanine racemase [Chloroflexus sp. Y-400-fl]
 gi|163668646|gb|ABY35012.1| alanine racemase [Chloroflexus aurantiacus J-10-fl]
 gi|222449081|gb|ACM53347.1| alanine racemase [Chloroflexus sp. Y-400-fl]
          Length = 816

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 91/464 (19%), Positives = 165/464 (35%), Gaps = 47/464 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++A  G  IG +        S DSR     E F A++    DGHD+I  A+  GA 
Sbjct: 5   LAELIEA-GGTVIGPIHADTFTDWSYDSRLTVAGECFIALRTTRADGHDYIPAALAAGAR 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++          + +  V    D    L + A     R + T+IA+TG +GKT  +  +
Sbjct: 64  GILCTRP---PHDAGTATVVVCPDPQALLLRWASNRLQRLQPTVIAVTGGIGKTLARRAI 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L++   T+    ++N+ +G+P+ LAR+  D  + + E    HL  +        P +
Sbjct: 121 AAVLATHAPTFQSRRNFNSLLGLPIALARLERDHQYAVLEFAGEHLPPLAAAFP---PRL 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T       + F   + +                                +       
Sbjct: 178 AVVTAGTDDATARFLARQGVTV-----------------------------IAAEGVSSA 208

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG       +        +     V  QG  + +     G       L  + +    
Sbjct: 209 HLTFGTGSGCAIRATAISYRRDGVDCVVIGQGLELPITIPLPGPPGVAAALAAVAVGLHY 268

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                   +AL+     +    R R         ++D+S+NA P +M    + L  ++  
Sbjct: 269 GVRPAAIRQALA---GLDAPAGRLRPLPGANGELILDDSFNATPEAM---RAALQTLAAI 322

Query: 367 GEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSI 422
             GRRIAVLG   E+    +     +L    +     ++ L G     +  A      ++
Sbjct: 323 PTGRRIAVLGTPTELPAVDATPLLTELGMQAARS-AEYLVLKGMGAATMAQAARLANPTV 381

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +H  +T + +   +  S  D DVV+V         +++  LL 
Sbjct: 382 TIHVVDTNEAIRAALPPSRNDQDVVLVSGGAGERLEQVVAPLLA 425


>gi|304317207|ref|YP_003852352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778709|gb|ADL69268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 484

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 164/475 (34%), Gaps = 49/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L+ I+   +       + GI  DSR+      F AIKG   DG D+I  A+++G
Sbjct: 1   MRLADVLKDIEYTIVKGNVDVDIRGICYDSRNSKDGSMFVAIKGFKSDGADYIGDAIERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+V+           I +  V +   +L K+A         +  +I +TG+ GKT+ 
Sbjct: 61  AVAVLVD---GEISIDKDITLIKVQNTRKSLAKIASNYYGDPSKQLFLIGVTGTNGKTSV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L S       IG+  N IG                    R+ VD       + 
Sbjct: 118 TYMIKSILESQNNKVGLIGTIQNMIGDKVYPTERTTPESLDLQRYLRLMVDEGVKYVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               IAV T +   HL     +++ A+AKA++F   +    I ++ D
Sbjct: 178 VSSHSLALNRVDECDFDIAVFTNLTQDHLDFHKTMDDYANAKAKLFRMAKTACVINIDDD 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            S                + ++G    A    +  K   + +   VQ++    ++     
Sbjct: 238 YSSL------IIENSNAKVVTYGIKDYAYIMAKDIKNDIKGAKYTVQIEDIKSDIALKIP 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  + +  IL   + +   AL      + +G+     ++  +  +ID ++  
Sbjct: 292 GLFSVYNSLAAISVAFILGIPLQSVKIALKD---VKIKGRFEILDIDAPYNVVIDYAHTP 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        +++     +  GR+I + G     G             ++      V ++ 
Sbjct: 349 DGLE-----NLMKAFGEYDTGRKILLFG----CGGDRDKGKRPKMGEVAGKYADFVIITS 399

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            ++  +          E       +  S   D D+V++  K 
Sbjct: 400 DNPRSEDPMQIISEIEMGIKNTKCPYKIIENRKEAIKYALSIAKDNDIVILAGKG 454


>gi|332882627|ref|ZP_08450239.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679427|gb|EGJ52412.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 487

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 149/477 (31%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL  +   +   V    +  +  DSR +     F AI G   +GH++I  A + 
Sbjct: 1   MTNLTSLLNNLTIKASLYVEDKPITSVCFDSRKVEKGSMFVAIAGTQSNGHEYIDQATRS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V     +  +    +    V +   AL  +A         K T++ +TG+ GKTT
Sbjct: 61  GATAIVCEQ--LPQLLFPDVSYIVVPNSHSALALIAANFYGNPSEKLTLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167
              +L        +          Y     +      P          + V        +
Sbjct: 119 IATLLYQLFRKAGQKAGLLSTVAVYVDDQRFEATHTTPDPLQLHYYLHLMVQQGVKYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     + T +   HL            K   F+ L  T    +N 
Sbjct: 179 EVSSHGIDQHRTEGLHFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPSTAFALVNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A       ++    +AD++    +   +   + +       +++   
Sbjct: 239 DDKNGAFMLQNTKAQKK----TYALKTHADYKAHIIESRFDGLLLRINQHEVWTKLI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L   G  ++L  D   A+  +S   P  GR +    A            Y 
Sbjct: 292 -GEFNAYNLLAVFGAATLLGVDELEALTLISAIEPVAGRFQYAVSATGVITIVD----YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  ++ I  H E     V       G         +   ++     +V L+
Sbjct: 347 HTPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILT 401

Query: 408 G-----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                     A+   + + +   +                +  +   GD+V++  K 
Sbjct: 402 SDNPRNEEPEAILSEMEQGVQAQHFHKVQTITDRRQAIQSVCKNAQKGDIVLIAGKG 458


>gi|160903252|ref|YP_001568833.1| Mur ligase middle domain-containing protein [Petrotoga mobilis
           SJ95]
 gi|160360896|gb|ABX32510.1| Mur ligase middle domain protein [Petrotoga mobilis SJ95]
          Length = 430

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 99/439 (22%), Positives = 178/439 (40%), Gaps = 25/439 (5%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +   IDSR +   + F  +KG   DGH FI  A++ GA  V+V  D+V         +  
Sbjct: 10  HNFQIDSRKVNEGDVFLCLKGEKTDGHLFINDALKNGASYVIVEKDVVDFPKE---KIIK 66

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+ VL  +   A      +    I ITGS GKTTTKE L   L +  KT+    + N  I
Sbjct: 67  VNSVLEEMLISASTLINENAKLKIGITGSTGKTTTKECLYYLLLAYFKTFRNEMNLNTEI 126

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+PL++     + +  I E G+   G++ FL+      +A+IT +  +HL     +E +A
Sbjct: 127 GIPLSILNNYNNEETVILEEGLRKKGDLEFLSRYFNLDVAIITNVGASHLEFLDSLETVA 186

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K +I   ++K   I              K  A       +FG     D  L+ ++   
Sbjct: 187 EEKMKITSNMDKGVLIINGDYS------LLKELAPKHLNRLTFGTKDENDAVLKSFEYNE 240

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +        +   +V     +   Q + +  G++ +   D+      L   +  + R 
Sbjct: 241 NHTTTFYARILQEDLMVTLNHYWSEGQILDLLSGLLLLRFIDLPVDPYYLFNINIPQDRF 300

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  +    +G   ++++SYNA+  S     S  + I       +I ++G++ E+G+ S+ 
Sbjct: 301 QTIK----RGNLLIVNDSYNASYESF---KSAFNSIKKWNLSPKIIIMGEIKELGKYSEE 353

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +HI +           ++               +  V + + +      I S+   G V+
Sbjct: 354 YHIKVITEALNI-FDRIYFYDPQENFTY---LSNDKVTFFKELKK-IDEIISNTTKG-VI 407

Query: 448 VVKSSNSCGFYRLINLLLE 466
            +K SN+ G  +    L E
Sbjct: 408 YIKGSNTTGINK---YLKE 423


>gi|240948412|ref|ZP_04752790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
 gi|240297238|gb|EER47796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus minor NM305]
          Length = 496

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 163/460 (35%), Gaps = 45/460 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-------MVASIGS 80
           N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       +     +
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGADLVLAEADDDVQAVRLAEKFAN 80

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + +    A
Sbjct: 81  STACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLGGKSA 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182
            +G+  N  G+   +          +                  + +S  G  ++    +
Sbjct: 141 VMGTIGN--GLYGQVQEAVNTTGSAVEIQRNLADFVELGADFCAMEVSSHGLAQYRAEAL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +A+ T ++  HL   + +EE A AK  +F  L     +    D+   E L     A+
Sbjct: 199 DFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVINADDEIGREWLAKLPEAV 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T   F   +    + +  +   + + +E +    + E+    IG     N+L     
Sbjct: 259 AVSTDSQFQPQQTRWVKAKAVQFTLQGATIEFESSWGNGELKSRLIGAFNVSNLLTAFAG 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D+   I+   + +   GR +      N     ++   Y   P +++ A+     
Sbjct: 319 LLALDYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALDAA-- 376

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
              H EG    V G     G    +    L   ++      V ++  +            
Sbjct: 377 -RLHCEGELWCVFG----CGGDRDTGKRPLMARIAEQLADRVIVTDDNPRTEDPDVIFND 431

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +   V              +     DV+++  K 
Sbjct: 432 IMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 471


>gi|303235118|ref|ZP_07321738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
 gi|302493710|gb|EFL53496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Finegoldia magna BVS033A4]
          Length = 477

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 153/476 (32%), Gaps = 58/476 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKDGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +VV  D+        I    V D   AL +++         K  +I +TG+ GKTTT
Sbjct: 61  ANTIVVTEDVTEID---DINYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLARMP-----------VDVDFGIFE 166
             M++  L  +      IG+    IG      P T   +              +D  + E
Sbjct: 118 SSMISHILEHLDSPCTNIGTNGTFIGGKKYETPNTTPEICEINKILKLSVEEKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S  G        +   +AV+  ++  H+     +E    AK  +FE           
Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVLNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +      +  Y+F     +DF+    +    +    +  + K+++ V +
Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E R +  +  +          + 
Sbjct: 284 RFALFDVYNSVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNDMGINIVIDFAHT- 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +  +        +R   +  M   G+ +     ++ ++ +  N+  V  
Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTSEIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        + +           +      +               GD V++  K 
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEIANKGDFVLLLGKG 447


>gi|91200081|emb|CAJ73124.1| similar to UDP-N-acetylmuramyl tripeptide synthase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 489

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 154/476 (32%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++   ++ +      +  V G++ DSR +     F AIKG   DGHDFI  A++KG
Sbjct: 1   MKLSEICAVLEKYKCNSFTEKVVLGLTHDSRKVKEGYIFVAIKGYKSDGHDFISMAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VV    +      +++P   V +   AL+ L+        SK TI+ ITG+ GKTTT
Sbjct: 61  AIAVVAEKGVDYV---INVPQIVVPNARRALSLLSEYFYGYPSSKMTIVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
                  + S       IG+    +G                       +  ++ + + E
Sbjct: 118 SFFTKSIIESSGNKAGLIGTIYYQLGSRIIPANETTPESVDIQSHLSDMLNNNIRYAVIE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S     +     V    AV T ++  HL     I+     K ++  GL++  +  LN
Sbjct: 178 --ASSHALSQHRLDGVHFRSAVFTNLSAEHLDYHENIKNYREEKIKLMRGLDENASAVLN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D +  +       +   + ++   K  +A  +          +   +        +   
Sbjct: 236 ADHTSSKYFAK---STVAQIVWYGIKDTSAHVRAEIINMGVNGTRFLLISPWGKEVIHLK 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L        L  D++   K L   +   GR ++     +         ++
Sbjct: 293 LTGNHNVYNALAAATTGFCLGFDMEIIRKGLESLNNVPGRLEKLDYGQDFHVLIDYAHTH 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A          VL  +      R I V G     G             ++       W+
Sbjct: 353 DA-------LQVVLETLRGIAARRIILVFG----CGGDRDKGKRAKMGHIAEKYSDLFWI 401

Query: 407 SGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +  ++  + R                       GDVVV+  K 
Sbjct: 402 TNDNPRSEDPLNIIREIQRGIKRDSCYKVQLDRKVAIEEALLEAKKGDVVVIAGKG 457


>gi|288553166|ref|YP_003425101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
 gi|288544326|gb|ADC48209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus pseudofirmus OF4]
          Length = 487

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 157/474 (33%), Gaps = 41/474 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   ++ +         +  I +DSR +     FF IKG   DGHDF   AV+K
Sbjct: 1   MMKLSELTNVLRSYEWKNEGDPEITHIEMDSREVVSGTLFFCIKGYTVDGHDFAKQAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  ++   ++      + +P   V D    + +LA        SK  +I +TG+ GKTT
Sbjct: 61  GAVALIAEREV----KGVEVPTIIVQDTKRTMARLANLFYGDPTSKMNLIGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167
              +L   ++   K    IG+    IG                    +  VD D     +
Sbjct: 117 VTHLLEQIMNDANKRTGLIGTMYTKIGDVELKTQNTTPESITLQKRFKEMVDADVETALM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S               IAV T + P HL     +E    AK  +F  L    T     
Sbjct: 177 EVSSHALHLGRVRGCDFDIAVFTNLTPDHLDYHETMEAYLFAKGLLFAQLGNRFTEGKVA 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  +    +   +    + ++G    AD      +  +  +   ++   +S+E+    
Sbjct: 237 VLNRDDEAADELLKMTTVDVLTYGVENKADIMAEDIEITARGTTFTLKAGTESIEIEMKL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N L            ++   K+L   H   GR   +        +T+I +  +
Sbjct: 297 IGMFSVYNALAAASAAIASGIPLEQIKKSLEAVHGVAGR---FEPVDAGQDYTVIVDYAH 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            + +      +VL+ +    +G+   V+G     G         +   ++     +   +
Sbjct: 354 TSDS----LENVLTTVREFAKGKISVVVG----CGGDRDRTKRPVMAEIATKYADNAIFT 405

Query: 408 -----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + D +   +   +               +     D++V+  K 
Sbjct: 406 SDNPRSEDPKQILDDMTHGLESSNYTVCVDRKEAIYQAINDANKDDILVIAGKG 459


>gi|121535924|ref|ZP_01667720.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305495|gb|EAX46441.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 496

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 148/481 (30%), Gaps = 51/481 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +L+  + G  +       +  ++ DSR   P   F  + G   DGHD+I  A   GA
Sbjct: 4   NLQELVALMPGCEVRGDINLTITAVTYDSRQAKPGSLFICLTGSKVDGHDYIAQARAGGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             V+V  ++    G   + V  V D   A+  +          K  +I +TG+ GKTTT 
Sbjct: 64  VAVLVEKEVSVEPG---MTVIKVSDTRAAMQAITPFFFDYPSQKLRVIGVTGTNGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDFGIFEL 167
            ++   L         IG+ +  IG   +P+                 +   +D+ + E+
Sbjct: 121 HLIRSILMQAGYKVGLIGTIHTLIGDRTLPVKNTTPDVVDLQGLLAEMVAAGMDYAVMEV 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
             SH   +          I V T I   HL      E    A A+     G         
Sbjct: 181 -SSHALALNRTAGC-EFDIGVFTNITRDHLDFHITFENYIDAKAELFRLVGRPDNVKTGK 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +   +  +   A           ++G    AD   R     ++ +  E       + +  
Sbjct: 239 SAVINTDDPAAAHMLREVTYRAITYGVQDGADLTARNINIQADGAKFEAVTTRGIIPLAL 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+L  +G+      + D    AL  F    GR   +        FT+I + 
Sbjct: 299 QITGLFNVYNVLAAIGVALAEGIEPDVVKTALEAFRSVPGR---FEIVDAGQPFTVIVD- 354

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +    Q +       IAV G     G         +   L+      V 
Sbjct: 355 YAHTPDGLENILKTARQFAQRR---IIAVFG----CGGDRDRTKRPIMGRLAAEYADVVV 407

Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            +  +                +++ L                    S     D+V++  K
Sbjct: 408 ATSDNPRTEDPVSILKEIEVGIREGLKPGKSYEVIVDRRQAIERALSLAEPQDIVIIAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|323701283|ref|ZP_08112958.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533885|gb|EGB23749.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 492

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 151/475 (31%), Gaps = 51/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL AI   +I       V GI+ DSR + P   F AIKG   DGH FI +A + GA 
Sbjct: 8   LKELLSAIDVIAISGPQDIEVAGITYDSRKVQPGYLFVAIKGFKVDGHSFINNAREAGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
                           + V  V D   AL  LA         K T++ +TG+ GKTTT  
Sbjct: 68  A---VVVEREVEVPADLTVIKVSDSRQALALLADKFYGHPSRKMTVVGVTGTNGKTTTTH 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           ++      +      +G+ +N IG               +   +A M  +   G+  + +
Sbjct: 125 LIAAIWRQVGLKPGVVGTIHNLIGEKALPVTNTTPESLDLHKLMAEMVREDVQGVA-MEV 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           V+  +AV T I   HL     +E+  +AKA++                
Sbjct: 184 SSHALALNRVAGVKYDVAVFTNITQDHLDFHGNMEDYLAAKAKL------FEKDIKYAVI 237

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +    +   +    +Y++G   NAD + +  +  +      V        +     G
Sbjct: 238 NADDQAAEQLFKISRGKVYTYGIENNADVRAKDIQVTARGVSFTVNSPWGEQRLELKLTG 297

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L    +  +L  +      AL       GR +      +         + +  
Sbjct: 298 RFNVYNSLAAYTVGMVLGYNGMDVKAALEGVTGVAGRFELVDQGQDFAVVVDYAHTPDG- 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   ++L+      +GR I V G     G         +   ++        ++  
Sbjct: 357 ------LENILTTARQITKGRLITVFG----CGGDRDRTKRPIMGEIAARYSDLPVVTSD 406

Query: 410 HVL---------ALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +   L       Y              +    GDVVV+  K 
Sbjct: 407 NPRTEDPQKIIEDILVGLQGKDPGSYLVIADRREAINRAINLAEPGDVVVIAGKG 461


>gi|240850897|ref|YP_002972297.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
 gi|240268020|gb|ACS51608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bartonella grahamii as4aup]
          Length = 483

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 150/456 (32%), Gaps = 41/456 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    + GIS DSR + P   F A++G   DG  +I  A+++GA  +V +    A +  
Sbjct: 15  NLSSMEITGISADSRQVLPGYVFVAVQGKKSDGRHYIDDAIKRGARAIVTD--CHAVLED 72

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L +P+  V +V  +L   A         T++A+TG+ GKT+    +    + +    A I
Sbjct: 73  LPVPILRVSNVRHSLALAAARFYGSQPETVVAVTGTSGKTSVVSFIRQIWTHVGFCAASI 132

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186
           G+             +       +                L  S  G  +     VR   
Sbjct: 133 GTVGVVSPKQNVYGSLTTPDPVALHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTA 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+   +G+E+   AK ++F+ L       L + D  +            + 
Sbjct: 193 GAFTNLGRDHMDYHTGVEDYLRAKMKLFDTLLPVSAPALIFADDVYSQKVIDVVTQARRR 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+       + + +    +  +E +++           G     N LM  G+    
Sbjct: 253 VLTIGRKGQF-ITINRVEHQRSKQCIECRVENNIYTFDLPLAGDFQVANALMAAGLAIAT 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                    AL       GR +      N      ID ++            VL  + P 
Sbjct: 312 GVSPRKVFSALETLQGAPGRLEFVGKTENNA-PVYIDYAHKPEALE-----QVLLSVRPF 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDA 417
            +GR I V G     G         L   ++      V ++  +            +  A
Sbjct: 366 TQGRLIVVFG----CGGDRDQGKRPLMGKIAADKADIVIVTDDNPRTEMPEKIRKDILQA 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +P +I +           +    L  GD +++  K 
Sbjct: 422 VPTAIEI---ADRGEAISYAVELLKAGDTLIIAGKG 454


>gi|219870386|ref|YP_002474761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parasuis SH0165]
 gi|219690590|gb|ACL31813.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           SH0165]
          Length = 496

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 169/487 (34%), Gaps = 52/487 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F                   +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------- 164
            ITG+ GKTTT ++     + +    A +G+  N  G+   +          +       
Sbjct: 114 GITGTNGKTTTAQLFAQWRNLLGGKSAVMGTIGN--GLYGQVQEAVNTTGSAVEIQHNLA 171

Query: 165 ---------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                      + +S  G  ++    +   +A+ T ++  HL   + +EE A AK  +F 
Sbjct: 172 NFVELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L     +    D+   + L     A+ + T   F   +    + +  +   + + +E +
Sbjct: 232 ELSSKQQVINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFE 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + E+    IG     N+L     +  L  D+   ++   + +   GR +      N
Sbjct: 292 SSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEEN 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++   Y   P +++ A+        H EG    V G     G    +    L   
Sbjct: 352 AEESPMVIVDYAHTPDALEKALDAA---RLHCEGELWCVFG----CGGDRDTGKRPLMAR 404

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++      V ++  +            +     +   V              +     DV
Sbjct: 405 IAEQLADRVIVTDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDV 464

Query: 447 VVV--KS 451
           +++  K 
Sbjct: 465 ILIAGKG 471


>gi|88799428|ref|ZP_01115005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
 gi|88777738|gb|EAR08936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Reinekea sp. MED297]
          Length = 484

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/449 (18%), Positives = 154/449 (34%), Gaps = 43/449 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I++DSR +     F A+KG H DGHDFI  A+ KGA  ++    +        +PV  VD
Sbjct: 22  ITLDSREVTRGSVFIALKGFHADGHDFIQSAIDKGAVAILCERRVPIQH-DTQVPVCVVD 80

Query: 90  DVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNH 146
            +   L +LA         K  +I ITG+ GKT+T + +  +L  + ++      +    
Sbjct: 81  GLRDQLGELAHRFYGSVTHKLRVIGITGTNGKTSTCQYVAQSLDFLGRRCGIIGTNGQGL 140

Query: 147 IGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVITTIA 193
            G          DV     E             + +S  G  +     +    AV T ++
Sbjct: 141 WGQLSDTLNTTPDVIRLHEELSRQQSQGAEFCAMEVSSHGLDQGRVDGLHFSTAVFTNLS 200

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E    AK  +           +N DD + +  + +  A     ++++   
Sbjct: 201 RDHLDYHHSMEAYFEAKWRL-MRWPGLRNAVVNLDDEWVQKNRERIMAE---RVWTYALE 256

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            +AD Q  +          +V+     +++    +G     N L  L ++      V+TA
Sbjct: 257 TDADVQALEVNCHEAGIDAKVKTPETDVDLNLRLLGRFNLSNALAALTVMLAEGVPVNTA 316

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + +S  +P +GR +  R A +         + +A           L     H  GR + 
Sbjct: 317 ARVISNCNPVKGRMETLRSAYSPTVVVDYAHTPDA-------LEKALQSCREHVNGRLVV 369

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHV 424
           + G     G             ++      V ++  +            ++       + 
Sbjct: 370 IFG----CGGDRDGGKRPEMARVAEQYADVVVVTDDNPRTEPSARIIADIEQGFSTEANY 425

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +     DVV++  K 
Sbjct: 426 RVIPDRREAIVQTLNDSERSDVVLIAGKG 454


>gi|225011609|ref|ZP_03702047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
 gi|225004112|gb|EEG42084.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-2A]
          Length = 486

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 162/477 (33%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   +I       V G+  DSR++     + A KG   DGHDFI HA+  
Sbjct: 1   MKTLQDILYGVSIEAIVGATTIPVKGVVFDSRNVKIDFVYVAQKGVQVDGHDFISHAISN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA ++V     + +     +    V++    L  LA         K T++ +TG+ GKTT
Sbjct: 61  GAKVIVCE--FIPAECVAGVAYVKVENSSKTLGVLASNFYDNPSRKLTLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA------------RMPVDVDFGI--FEL 167
              +L    SS       + +     G                   +   V+ G+    +
Sbjct: 119 IASLLYALFSSEGYACGLLSTVKIIYGTNQFENLHTTPDAISINKHLHAMVESGVTHCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +     +  ++ + + +   HL      +     K + F+ L KT     N 
Sbjct: 179 EVSSHGIAQNRIEGLHFYVGIFSNLTHDHLDYHGDFKNYRDIKKQFFDSLPKTAFALTNV 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A      Y++   ++ADF+ +  +       +++Q Q     ++   
Sbjct: 239 DDKNGTYMLQNTVAKK----YTYAIKQHADFKAQILECQFSGMLLKIQSQEVWTSLI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                A N    L + ++ +     ++  L      +    R++        T++ + Y 
Sbjct: 292 ----GAFNAQNLLAVYAVSSLLELPSLSILKRISELKSVNGRFQTLQTPNKVTVVVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  ++ I    E     +       G         L    ++     V  +
Sbjct: 347 HTPDALENVLQTIATIRTRNETLITVI-----GCGGNRDQEKRPLMAKAAVNFSDKVIFT 401

Query: 408 G-----FHVLALKDALPRSIHVHYSET------MDGLFLFIQSSLVDGDVVVV--KS 451
                      +   + + +   + +        +           +GD+V++  K 
Sbjct: 402 SDNPRNEDPAVIISDMMKGVPAEHYKKTLKVTLREEAIAMAGQLAKEGDIVLIAGKG 458


>gi|114566358|ref|YP_753512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122318561|sp|Q0AYR3|MURE_SYNWW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114337293|gb|ABI68141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 489

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 160/478 (33%), Gaps = 49/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ +            ++GI+ DSR + P + F  I G   DGH F   A++ G
Sbjct: 1   MKLVELIKNLTIELQDGPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+    +          +    D   AL  LA     R      ++A+TG+ GKTTT
Sbjct: 61  AVAVLAERQLDTGGK---ATLLTTPDTRSALALLAANYYGRPSKSIRVVAVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
            +++   L    K  A +G+    +G      +                     D+ + E
Sbjct: 118 TDLIKAILEEAGKKTAIMGTLYAQVGEIQREMQHTTPEALEIESFMALCREEKADYIVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  +++ +  +   ++AV T +   HL     ++   +AK ++F+ +++    +  
Sbjct: 178 V-SSHALQLQRVAEI-DFNVAVFTNLTQDHLDFHQNMDNYRAAKLQLFQMIKEEKQNYAI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +    +    +          S+G  K +D+Q  + K   + S   +     S+ +   
Sbjct: 236 INID--DPWAEEIFQAATIPCRSYGIKKRSDYQAGELKIDLDGSSFRLHYGDNSLMINMK 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N L  +        D      AL+      GR ++  C  +         + 
Sbjct: 294 LIGLFSIYNALAAISFALQEGIDPGLIQSALARVEGVPGRFEKVDCGQDFAVIVDYAHTP 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          ++L      G+ R I V G     G         L   ++        +
Sbjct: 354 DG-------LENILQTSRELGKKRLICVFG----CGGDRDRSKRPLMGEIAAKYSDFCVV 402

Query: 407 SGFHVLA------LKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +      + + +P    V                        GD+VV+  K 
Sbjct: 403 TSDNPRSEDPHAIIAEIIPGMDKVEKSRYAIIVDRREAIRHAIHLARTGDLVVIAGKG 460


>gi|29341418|gb|AAO79206.1| alanine racemase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 773

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 9/382 (2%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V + L AL KLA A R   K  +I ITGS GKT  KE L   LS  +       SYN
Sbjct: 33  FLIVANPLKALQKLAEAHRENFKIPVIGITGSNGKTIVKEWLHQLLSPDRCIVRSPRSYN 92

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           + IGVPL++ ++  + + GIFE G+S +GE+  L  +++P I ++T I  AH  NF  ++
Sbjct: 93  SQIGVPLSVWQLNEEAELGIFEAGISEMGEMGALKRMIKPTIGILTNIGGAHQENFFSLQ 152

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  +F+  +           +    L +   A  + T      S     +     
Sbjct: 153 EKCMEKLTLFKDCDVV-------IYNGDNELISNCVAKSMLTAREIAWSCKDIERPLYIS 205

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           + +++    V             I +    ++   L  ++     +  A +        E
Sbjct: 206 KVTKKEDHTVIAYRYLDMDNIFCIPFIDDASIENALNCLAACLYLMTPADQITERMARLE 265

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +    LI++SYN++ AS+  A+  L + S     +R  +L D+ E G+ 
Sbjct: 266 PIAMRLEVKEGKNNCILINDSYNSDLASLDIALDFLVRRSEKKGLKRTLILSDILETGQS 325

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF-IQSSLVD 443
           + + +  +A+++    I+ +   G  + +       +   ++    D L    I  +L  
Sbjct: 326 TATLYRRVAQLIKSRGINKLIGVGAEISSCAARFEGTPERYFFPDTDALLRSGIFKTLHS 385

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
            +V+++K S    F  +   L 
Sbjct: 386 -EVILIKGSRVFNFDLVSEELE 406


>gi|237720374|ref|ZP_04550855.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
 gi|229450125|gb|EEO55916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 160/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        +   ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGNPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFRYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K+     N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++      DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTVSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|251797879|ref|YP_003012610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
 gi|247545505|gb|ACT02524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. JDR-2]
          Length = 495

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 147/482 (30%), Gaps = 51/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + +    +       + GI  DSR + P + F  + G   DGH +   A  KG
Sbjct: 1   MRLSELAELLITARLTGAGDTEIAGIETDSRKVGPGQLFICLPGHTVDGHAYAPQAAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A   VV  ++      L  P   V D   A+  LA            +I +TG+ GKTTT
Sbjct: 61  AVAFVVEREL-----ELDAPQLIVKDSRLAMAVLADHFYGHPSNALHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARM------PVDVDFGIFELG 168
             ++   L+   +    IG+             G      ++                + 
Sbjct: 116 TYLIEQILNDNDRNSGVIGTVEMRYAGKSFPMSGTTPEALQLQQYLSDMRKEGTAYCAIE 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG----TIF 224
           +S     +      R   AV T +   HL     +E+ A+AK   F  L           
Sbjct: 176 VSSHALEQGRVKGCRFRTAVFTNLTQDHLDYHGTMEKYAAAKGLFFSRLGNEYAAKAEDR 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +   L    + ++G   +AD +    +  ++ +   V       ++ 
Sbjct: 236 AYAVLNVDDPVSEQFAKLTAAEVITYGIDNHADVRASNIRISAQGTTFRVSTFRGKTDIA 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +    I    ++    +L       GR +  +             
Sbjct: 296 LQMVGKFNVYNALAAISAALIEGVALERIKASLEAVPGVPGRVESVQAGQEFAVVVD--- 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++  +  + +++P      I V G     G         +   ++     +V
Sbjct: 353 -YAHTPDGLENVLRAVKELAPPR---IICVFG----CGGDRDRTKRPIMGSIAARYADYV 404

Query: 405 WLSGFHV---------LALKDA-LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +            ++   L   I     E                  GDVV++  
Sbjct: 405 LVTSDNPRTEDPDLILKDIEAGLLKDGITSDRYELKVDRRAAIEKAVEMASPGDVVLIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|256820427|ref|YP_003141706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582010|gb|ACU93145.1| UDP-N-acetylmuramyl-tripeptide synthetase [Capnocytophaga ochracea
           DSM 7271]
          Length = 486

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 151/476 (31%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ I   +   V    +  +  DSR       F AI G   +GH++I  A++ G
Sbjct: 1   MNLKTLLKNITIKTSLYVEDKDITSVCFDSRKAEKGSMFVAITGTQSNGHEYIDQAIRSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
           A  +V     +       +    V +   AL  +A          +I   +TG+ GKTT 
Sbjct: 61  ATAIVCEQ--LPQQPLPGVSYIVVPNSHSALALIAANFYGNPSEKLILVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FELG 168
             +L                        C  + +           + + V+ G+    + 
Sbjct: 119 ATLLYQLFRKAGQKAGLLSTVAVYVDDQCFEATHTTPDPLQLNHYLHLMVEQGVKYCFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +  T  ++    + T +   HL            K   F+ L  T    +N D
Sbjct: 179 VSSHGIDQHRTEGLQFAGGIFTNLTRDHLDYHKTFAAYRDVKKRFFDALPATAFALVNND 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++    +AD++    +   +   + +       +++    
Sbjct: 239 DKNGAFMLQNTKAQKK----TYALKTHADYKAYIIESRFDGLLLRINQHEVWTKLI---- 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L + +  T      I+AL++    E    R++ A++      I + Y  
Sbjct: 291 ---GEFNAYNLLAVYATATLLSIDEIEALTLISAIEPVAGRFQYAVSATGVITIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  ++ I  H E     V       G         +   ++     +V L+ 
Sbjct: 347 TPDALENVLKTINDIRTHNETLTTVV-----GCGGNRDKGKRPIMADIATTLSDNVILTS 401

Query: 409 FHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            +        +   + + +   Y                +  +   GD++++  K 
Sbjct: 402 DNPRNEEPETILSEMQQGVQPQYFHKVQTITDRRQAIQSVCKNAKKGDIILIAGKG 457


>gi|189502007|ref|YP_001957724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|189497448|gb|ACE05995.1| hypothetical protein Aasi_0594 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 487

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 149/474 (31%), Gaps = 45/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +    I       +  I +DSR       F A+ G   DGH +I  A+  G+ 
Sbjct: 4   LQELLNKVSVQQIIGDTNLPIKSICLDSREAEKDSLFIALPGSQVDGHQYIADAIALGSK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++          +  +    V +V  AL  +A         K  ++A+TG+ GKT+T  
Sbjct: 64  AIICEK--YPEHLATHVTYIQVSNVTQALGTIASNFYKNPSTKLKLVAVTGTSGKTSTVH 121

Query: 125 MLTIALSSIKK---TYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFELGMS 170
           +L      +       + I +  N    P                  V        +  S
Sbjct: 122 LLYRLFRQLGYSVGMLSTIHNQINDQAFPSTLTTPNAIDINKALAQMVTAGCQFCFMEAS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     +    A+   I+  HL      +    AK ++F+ L     +  N DD 
Sbjct: 182 SHAIVQNRLAGLELAGALFLNISHDHLDYHLTFDAYIQAKKKLFDELTANAFVLYNIDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +++   + A    T YS    + ADF  +      +   + +  Q    +++    G 
Sbjct: 242 RGKIMIQNTRA----TTYSMAIQRPADFTAQVLANTWQGLELRIGGQNVWFQLL----GT 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L       +L       + ALS   P  GR +            +ID ++    
Sbjct: 294 FNASNLLAAYATACLLGQPSQDILVALSSIKPITGRFQHIHTPKKPD--VIIDYAHKPEA 351

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                      + S   +G+ I ++G     G    +    +   ++      + L+  +
Sbjct: 352 LEKILLSIQQIRESAKQQGKIITIIG----CGGNRDTQKRPMMARIAYKLSDQLILTSDN 407

Query: 411 VL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                       +K  L  +  +                      D++++  K 
Sbjct: 408 PRYEDPKAIIEEMKQGLRSAEQLKTITIIDRAEAIQAAYQMAQPADIILIAGKG 461


>gi|237756371|ref|ZP_04584918.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691468|gb|EEP60529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 497

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 86/482 (17%), Positives = 161/482 (33%), Gaps = 49/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    ++L       I    +  V GI+ +S+ +    AFFAIKG   DGH+FI  A++ 
Sbjct: 1   MKLLKEIL--TDEKIIYGNQETAVEGITNNSKKVEKNYAFFAIKGTSVDGHNFIDEAIKN 58

Query: 64  GAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           GA ++ +     + S+   +I V   D+   +L   +         K  +IAITG+ GKT
Sbjct: 59  GASVIFIEDEKYIESLKGKNITVVLTDNGRKSLALASNRFYDNPSEKLKVIAITGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH-------IGVPLTLARMPVDVDFGIFELGM---- 169
           TT  +L             IG+ N          G               + + G     
Sbjct: 119 TTSNLLAQYYEMAGYKVGVIGTINYRVGDEILSSGHTTPDPVEWFKTLKVMKDKGADVVV 178

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA---SAKAEIFEGLEKTGTI 223
              S     ++  +  + H  + T +   HL     +E          E  +   K    
Sbjct: 179 AEVSSHAADQYRVYSTKFHGGIFTNLTQDHLDYHQTMENYFLAKRRVFEQIDKFNKEAIY 238

Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            +N DD     +         +    I ++GK  + DF++  ++    ++    + +   
Sbjct: 239 SINVDDEHGRRILDYLKNHLKVNDDKIITYGK-TSEDFKILDYRLSLFETEFSYKYKDTL 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G     N+  T+  +     D+    +      P +GR   +     QGF  
Sbjct: 298 SKIKTKLRGVFNIYNLSATVSFLIKDGFDLKFLEEKALHLKPIKGR---FEVIEGQGFIV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID ++  +        ++L  ++   E R I V G     G         L    +   
Sbjct: 355 VIDYAHTPDALE-----NILKSLNEIKENRIITVFGA----GGNRDKTKRPLMGETAESL 405

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +            + D +     V              S   + D++++  
Sbjct: 406 SDVVILTSDNPRNEDPLSIIEDILDGIKDKDKVITIVDRKQAIEKAISLAKEKDIILIAG 465

Query: 450 KS 451
           K 
Sbjct: 466 KG 467


>gi|312898965|ref|ZP_07758353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
 gi|310620127|gb|EFQ03699.1| UDP-N-acetylmuramyl-tripeptide synthetase [Megasphaera
           micronuciformis F0359]
          Length = 498

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 90/485 (18%), Positives = 149/485 (30%), Gaps = 54/485 (11%)

Query: 4   LWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L + I+G   I       + GIS DSR I     F  I G H DG  F   AV+
Sbjct: 1   MKTIKELCKEIKGIYNIDGRDNTEITGISADSRKIEKGFLFVCIAGVHVDGATFAGQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           KGA  V+ N  +      L I    V D+  AL  +          K  +I +TG+ GKT
Sbjct: 61  KGAVAVLTNKHLD---LPLEITQITVPDIHAALEDIVPYFYDYPGKKMRMIGVTGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   L         IG+ +    +         +    + EL             
Sbjct: 118 TTSHIIAHILREAGYHVGVIGTIHA---LIDDKELEIHNTTPDVVELQALLALMCAEGMD 174

Query: 181 L-----------------VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221
                             +    AV T +   HL      E    A AK       E   
Sbjct: 175 YVVMEVSSHALALNRVAGIEYDTAVFTNLTQDHLDFHKSFENYVAAKAKLFSGLTAEPPV 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +    +        + ++G  K+AD +    +   + S  +V     S+
Sbjct: 235 KKNKTAVINIDDPHADEILKATSCKVLTYGVEKDADLKGSNLQVGLKSSSFDVVGPFVSV 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  H  G     N L  +G       D D   KA+  F+   GR +      +      
Sbjct: 295 SLHMHITGLFNVYNTLAAIGAAHAEGVDTDVIDKAVQTFYSVPGRFELVEAGQDFAIVVD 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y+  P S++ A++    + P+     I V G     G         +   ++    
Sbjct: 355 ----YSHTPDSLEKALTTARAMKPNR---IITVFG----CGGDRDRTKRPIMGGIAAQYA 403

Query: 402 SHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               ++  +  +             ++ AL                         GD+V+
Sbjct: 404 DIPIVTSDNPRSEDPEFIISEVEGGVRAALKEGQRHEVIVDRRQAIYKAIEIAEPGDIVL 463

Query: 449 V--KS 451
           +  K 
Sbjct: 464 IAGKG 468


>gi|193213702|ref|YP_001999655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
 gi|193087179|gb|ACF12455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobaculum parvum
           NCIB 8327]
          Length = 517

 Score =  153 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 101/480 (21%), Positives = 166/480 (34%), Gaps = 47/480 (9%)

Query: 7   FHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             +L+  + G             V+G+S DSR I P   F A++G   DGH  I  A++ 
Sbjct: 13  LGELIDGLGGLVDRRGACASDRPVSGVSSDSRQIGPGSIFVAVRGFITDGHLHIDSAIEA 72

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTT 121
           GA  +V       +     +    V +   AL +L+         +  +I +TG+ GKTT
Sbjct: 73  GAVAIVCEA--YPAELRDGVCYLRVTESRKALAELSKNCYGNASDQLMLIGVTGTNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165
           T  +++  L++       IG+    IG                  L    +       + 
Sbjct: 131 TARLISSMLNAAGIPAGYIGTGLCRIGNRDIELERTTPEPNGLHALFRQMVDAGCCAAVM 190

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   +  + H +R   AV T + P HL     +EE A+AK  +F  L   G   L
Sbjct: 191 EV-SSHALVLDRV-HGLRFRSAVFTNLTPEHLDFHETMEEYAAAKRLLFSRLTDDGFAVL 248

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSWMEVQLQGKSM 281
           N DD     + A      +      G S   D    F+        E S  EV    +S 
Sbjct: 249 NADDPQAGFMAAGLPNDYLYCCSLSGNSSLCDSDHRFRAFISASTVEGSTAEVTFGAQSA 308

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G +   NML    +   L  D   A+  L+      GR +R   A       +
Sbjct: 309 TMQVPLPGEYNVMNMLEAFAVGISLGLDPAKALAGLAESEAVPGRMERIWSADRSRCGVV 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++ A+  L  ++P G      V G     G   +    ++  + +    
Sbjct: 369 D---YAHTPDALQKALETLRAVTPSGSK-LSVVFG---CGGNRDRKKRPEMGRIAAEL-A 420

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVDGDVVVV--KS 451
             V L+       +   + D +   +                     L  GD+++V  K 
Sbjct: 421 DRVILTSDNPRDENPELILDEVEAGMAGRVHLRISDRAEAIRRAVEGLGTGDILLVAGKG 480


>gi|325280029|ref|YP_004252571.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
 gi|324311838|gb|ADY32391.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Odoribacter splanchnicus DSM 20712]
          Length = 487

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 161/477 (33%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL  +    +       +  I  DSR I P + F A +G + DGH FI  A+ +
Sbjct: 1   MKKLKELLNGVNVGKVYGDTDREIGHIHFDSRKIEPGDVFIAQRGVNADGHAFIDKALTR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  VV     +       +      D   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GAVAVVCEQ--LPENRPEEVTYIWTADTSEALGVMAGNYWDNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T  +L   +    +    + +  N+IG                  L R  VD       +
Sbjct: 119 TATLLYELVRLAGEKAGLLSTVCNYIGEEKIPATHTTPDALSIQELLRRMVDAGCRYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     +    A+ + I   HL      +    AK   F+ L        N 
Sbjct: 179 EASSHAIHQKRIAGLDFDGAIFSNITHDHLDYHKTFKAYIEAKKAFFDRLPAHAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      Y++     ADF  +  ++  + + + +  +    +     
Sbjct: 239 DDKNGLVMLQNTRA----HRYTYSCRTMADFTAKAIEKHLDGTLLRLDGEEVWTKFT--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+L       +L    +  ++ +S+  P  GR +            +    Y 
Sbjct: 292 -GDFNAYNLLAVYAAARLLGFPKENVLEYVSLLVPVSGRFETLISTEG----VMAVVDYA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +S +  +     GR   V+  +   G+  ++   ++A+    Y+  HV L+
Sbjct: 347 HTPDAVENVLSTICGLK----GRDNQVITVVGAGGDRDKTKRPEMADAACRYS-DHVILT 401

Query: 408 GFHVLA------LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +      ++D L          V                   GD+++V  K 
Sbjct: 402 SDNPRSEDPEQIIRDMLTGVKEGFQYRVEAITDRKEAIRKAIGMASKGDIILVAGKG 458


>gi|47568717|ref|ZP_00239413.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47554611|gb|EAL12966.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 499

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 160/483 (33%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I   + F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  ++   LS        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K+      G   + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTPDA-------LENVLSTISEFAKGKIITVFG----CGGDRDAKKRSIMGGIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++    ++ +++Y  E   +       +     D+V++ 
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|167854988|ref|ZP_02477762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
 gi|167853836|gb|EDS25076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus parasuis
           29755]
          Length = 496

 Score =  153 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 170/487 (34%), Gaps = 52/487 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNPL +F                   +N +++DSR +   + F A+KG   DG  FI  A
Sbjct: 1   MNPLLSFF-------PELNHWGELKELNKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKA 53

Query: 61  VQKGAGLVVVNTD-------MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111
           +++GA LV+   D             + +  V  V ++   L+ +A A       K T++
Sbjct: 54  IEQGASLVLAEADDDVQAVRFAEKFANSTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLV 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------- 164
            ITG+ GKTTT ++ +   + +    A +G+  N  G+   +          +       
Sbjct: 114 GITGTNGKTTTAQLFSQWRNLLGGKSAVMGTIGN--GLYGQVQEAVNTTGSAVEIQHNLA 171

Query: 165 ---------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                      + +S  G  ++    +   +A+ T ++  HL   + +EE A AK  +F 
Sbjct: 172 NFVELGADFCAMEVSSHGLAQYRAEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFG 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L     +    D+   + L     A+ + T   F   +    + +  +   + + +E +
Sbjct: 232 ELSSKQQVINADDEIGRKWLAKLPEAVAVSTDSQFQPQQARWIKAKAVQFTLQGATIEFE 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               + E+    IG     N+L     +  L  D+   ++   + +   GR +      N
Sbjct: 292 SSWGNGELKSRLIGAFNVSNLLTAFAGLLALGYDLQKLVETAPLLNGVCGRMECLISEEN 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++   Y   P +++ A+        H EG    V G     G    +    L   
Sbjct: 352 AEESPMVIVDYAHTPDALEKALDAA---RLHCEGELWCVFG----CGGDRDTGKRPLMAR 404

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++      V ++  +            +     +   V              +     DV
Sbjct: 405 IAEQLADRVIITDDNPRTEDPDVIFNDVMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDV 464

Query: 447 VVV--KS 451
           +++  K 
Sbjct: 465 ILIAGKG 471


>gi|319406011|emb|CBI79642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. AR 15-3]
          Length = 484

 Score =  153 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 88/482 (18%), Positives = 153/482 (31%), Gaps = 49/482 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               + GIS DSR + P   F A+KG   DG +++  A+++GA +++ + + V    +LS
Sbjct: 17  ASIEITGISADSRQVLPGYVFVALKGNQRDGREYVNDAIKRGARVIITDNNFV--FENLS 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136
           IPV  V +V   L   A          ++A+TG+ GKT+    +      +         
Sbjct: 75  IPVIHVSEVRHRLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWEYVGFCAASIGT 134

Query: 137 -----YACIGSYNNHIGVPLTLARMPVD--VDFGIFEL--GMSHLGEIRFLTHLVRPHIA 187
                             P+ L R+  +   D G+       S  G  +     V    A
Sbjct: 135 VGVVSPKRHDIGFLTTPDPVMLQRLLYEIANDEGVTHAAFEASSHGIDQCRIDGVHLAAA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   H+     IE+   AK  +F  +       L + D  +            + +
Sbjct: 195 AFTNLGRDHMDYHGCIEDYFHAKMRLFNTILPQDAPALIFADDVYSQKVIDIVRQAHRKV 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G++      L + +    +  +E ++            G     N LM  G+     
Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPFSGDFQVANALMAAGLAIATN 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D   ++L       GR +        G    +D ++            VL  + P  
Sbjct: 314 APPDMVFRSLEKLQGPPGRLELV-GKTKDGAPVYVDYAHKPEALE-----QVLLSVRPFT 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPRS 421
           +GR I V G     G         L   ++      V ++  +          KD L   
Sbjct: 368 QGRLILVFG----CGGDRDRGKRALMGKIAENKADVVIVTDDNPRTEAPEKIRKDILQVV 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS-------SN-----SCGFYRLINLLLEE 467
                         +    L  GD ++V  K               S    ++I  L E 
Sbjct: 424 PEAIEIADRGKAIDYAVRLLKAGDTLIVAGKGHENGQIIGRETYPFSDRL-KVIAALKER 482

Query: 468 FP 469
             
Sbjct: 483 DK 484


>gi|227514323|ref|ZP_03944372.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087330|gb|EEI22642.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 194

 Score =  153 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 3/193 (1%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  ++ QAIQ H+ +       V  ++ DSR++     F  +KG   DGH ++  A + 
Sbjct: 3   MSLAEIAQAIQAHNQVDQWGDIEVRSVAFDSRNLEAGGLFVPLKGEQ-DGHQYVAKAFEN 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +   D          P   VDD L AL +L      +    ++A+TGS GKTTTK
Sbjct: 62  GAKATLWAKDHPYDPAD-GYPRLVVDDPLEALQQLGKYYLNKINPVVVAVTGSNGKTTTK 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +M+   L++         ++NN IGVP+TL  M  + +  + E+GM   G++  L+ L  
Sbjct: 121 DMVASILATQMNVIKTYANFNNEIGVPVTLLNMEANTEAVVVEMGMDRFGQLDLLSRLTT 180

Query: 184 PHIAVITTIAPAH 196
           P IAV+T I  AH
Sbjct: 181 PDIAVVTMIGEAH 193


>gi|223041550|ref|ZP_03611751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
 gi|223017645|gb|EEF16055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus minor
           202]
          Length = 500

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 164/464 (35%), Gaps = 49/464 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-----------MVA 76
           N +++DSR +   + F A+KG   DG  FI  A+++GA LV+   D              
Sbjct: 21  NKMTLDSRQVEKGDLFVALKGHQVDGRQFIEKAIEQGASLVLAEADDDVQAVRLAEKFAK 80

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
           +  + +  V  V ++   L+ +A A       K T++ ITG+ GKTTT ++     + + 
Sbjct: 81  NHENQTACVLEVPNLPKQLSAIAGAFYGNPSEKLTLVGITGTNGKTTTAQLFAQWRNLLG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFL 178
              A +G+  N  G+   +          I                  + +S  G  ++ 
Sbjct: 141 GKSAVMGTIGN--GLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQYR 198

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +A+ T ++  HL   + +EE A AK  +F  L     +    D+   E L   
Sbjct: 199 AEALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRLFGELSSKQQVINADDEIGREWLAKL 258

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A+ + T   F   +    + +  +   + + +EV+    + E+    IG     N+L 
Sbjct: 259 PEAVAVSTDSQFQPQQARWVKAKAVQFTLQGATIEVESSWGNGELKSRLIGAFNVSNLLT 318

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               +  L  D+   I+   + +   GR +      N     ++   Y   P +++ A+ 
Sbjct: 319 AFAGLLALGYDLQKLIETAPLLNGVCGRMECLISEENPEESPMVIVDYAHTPDALEKALD 378

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
                  H EG    V G     G    +    L   ++      V ++  +        
Sbjct: 379 AA---RLHCEGELWCVFG----CGGDRDTGKRPLMARIAEQLADKVIVTDDNPRTEDPDV 431

Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +     +   V              +     DV+++  K 
Sbjct: 432 IFNDIMKGFRKPKAVQSMHIRQYAIEQAIAQAEPKDVILIAGKG 475


>gi|312888799|ref|ZP_07748362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
 gi|311298674|gb|EFQ75780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mucilaginibacter paludis DSM 18603]
          Length = 484

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 80/497 (16%), Positives = 152/497 (30%), Gaps = 59/497 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L  I    +       ++ I  DSR + P   F A++G   DGH++I  A++ GA 
Sbjct: 4   LSEILNGIPATELQGADDMQISSIVFDSRKVVPGSLFVAVRGTLVDGHNYIEQAIKDGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +V       +IG   +    V D   AL ++A         K  ++ +TG+ GKTT   
Sbjct: 64  AIVCEDLPAHTIGE--VAFMMVADSAVALGQIAANFYDHPSDKLKLVGVTGTNGKTTVAT 121

Query: 125 MLTIALSSIKKTY--------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +L      +                             V  +L    V+       + +S
Sbjct: 122 LLYQLFHDLGYKCGLLSTVENQINGKVIPATHTTPDQVVLNSLLNDMVNQGCDYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL      +    AK   F+ L K+     N DD 
Sbjct: 182 SHAVAQHRIEGLQFSGGIFTNLTHDHLDYHKTFDNYLKAKKAFFDALPKSAFALTNIDDR 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       ++     AD++ +  +       +++  +    ++V    G 
Sbjct: 242 NGNIMLQNTRAQRK----TYALKSLADYKAKILENQFGGLLLDIDNEEVWFKMV----GS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  D    + +LS     EGR                   Y   P
Sbjct: 294 FNAYNLLAVYGAARLLGQDKTKVLTSLSKLKGAEGRFDYIISPNKVIGIVD----YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  +S +  I    E     +       G         +   ++      V L+  +
Sbjct: 350 DAVQNVLSTIHDIRKGTEKVITII-----GCGGDRDKTKRPIMAKVACQWSDKVILTSDN 404

Query: 411 VLA------LKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV----------- 448
             +      ++D                                GD+++           
Sbjct: 405 PRSEVPEQIIRDMEAGVDAEGKKKTISITDRHEAIKTACHLASPGDIILLAGKGHEKYQE 464

Query: 449 VKS--SNSCGFYRLINL 463
           VK   S+      LI  
Sbjct: 465 VKGVRSHFDDKEELIKA 481


>gi|301054131|ref|YP_003792342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300376300|gb|ADK05204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 492

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 81/483 (16%), Positives = 153/483 (31%), Gaps = 54/483 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61
               +L   +            + G+ IDSR I     F  + G +    D H F+  AV
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEIDSRKITNGNLFICVSGINGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A         K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L    S        +G+    +G                          + D+ 
Sbjct: 116 TTTSYLLEKIFSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNRNADYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K       G + + 
Sbjct: 176 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKGLLFARLGNDLST 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T       +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 234 TEKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIHFLVSSFNGEI 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     + S     EGR +      +      
Sbjct: 294 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSFSNLKSIEGRMEIIDENQDFLVIVD 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 354 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 402

Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++       +++       +       +     D+V++ 
Sbjct: 403 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 462

Query: 450 -KS 451
            K 
Sbjct: 463 GKG 465


>gi|225851409|ref|YP_002731643.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
 gi|225644803|gb|ACO02989.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Persephonella marina EX-H1]
          Length = 491

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLS 82
            V+ ++ +S+ +     FFAIKG   DGH FI  A++ GA  VV++        S     
Sbjct: 19  KVSHLTNNSKKVKKGSVFFAIKGTKIDGHQFIEDAIRNGASAVVLSDRKKAEYYSKKYPD 78

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +     D++     +++         K  +I +TG+ GKTT   +L   L    K    I
Sbjct: 79  VTFVISDNIRKTQAEVSNRFYDHPSEKLKVIGVTGTNGKTTVTNLLLQYLELAGKNTGII 138

Query: 141 GSYNNHI---------GVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ +              P ++              D+ + E+  S     ++  +    
Sbjct: 139 GTIHYKYREKIFASGRTTPDSIEWFYLLSEMRDRGADYVVAEV--SSHAVDQYRVYGTVF 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG- 243
           H  + T +   HL     +E     K   F+ ++ T    +   +      +        
Sbjct: 197 HGGIFTNLTQDHLDYHRDMENYFQTKKSFFDYIKMTNPEGVISTNIDDHYGRRIYQDFKS 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S+G+ KNA F++  +    +      +  G    V     G     N+      +
Sbjct: 257 CMNTISYGRDKNAQFRVSDFVVDMKGVSFCYEYNGIKRRVKSDLKGEFNIYNIAAAFSYL 316

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                D+D    A     P  GR +                  N    +  A   +L  +
Sbjct: 317 LRSGFDIDFLHHATEKLKPIRGRFETVEK---------DFLVVNDYAHTPDAIEKILMSL 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           +   + R I V G     G         L   ++      + L+  +            +
Sbjct: 368 NQIKKNRIIIVFGA----GGDRDRGKRPLMGKIAEELADIIILTSDNPRSEDPSRIIEDI 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           K  +     ++     +             D+V++  K 
Sbjct: 424 KSGMKMEKEIYEIIDREEAIKKAIEIARKDDIVLIAGKG 462


>gi|295399710|ref|ZP_06809691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111771|ref|YP_003990087.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
 gi|294978113|gb|EFG53710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216872|gb|ADP75476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. Y4.1MC1]
          Length = 490

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/489 (17%), Positives = 152/489 (31%), Gaps = 61/489 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I +DSR +     F  IKG   DGHDF   AV+ GA  ++    +      + 
Sbjct: 19  ENPTITSIEMDSRQVKKGALFICIKGFTVDGHDFAKQAVENGAVAIIAERPL-----DVD 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V D   A+  LA A   +   +  +I +TG+ GKTTT  ++   +    K    I
Sbjct: 74  VPVIVVRDSRRAMAVLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEQIVRKANKKTGLI 133

Query: 141 GSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ +  IG                           VD  I E+    L   R        
Sbjct: 134 GTVHIKIGDDAYPTQNTTPESLLLQRTFKQMADEGVDVAIMEVSSHALHMGRVHGCDYD- 192

Query: 185 HIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +AV T +   HL     +EE   A        G             +  +        +
Sbjct: 193 -VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASQYYKHM 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T+ ++G   ++D   ++          ++     +  V    IG     N+L  +  
Sbjct: 252 TAATVITYGTKTDSDIMAKRIDIVPNGMAFDLITPHGTARVKTKLIGLFNVYNLLAAVSA 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +        ++A+       GR   +        FT+I + Y   P S++  +    Q
Sbjct: 312 CLVSGIPFPVIVEAIEEISGVAGR---FETVDEGQDFTVIVD-YAHTPDSLENVLKTAQQ 367

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
            +         V+G     G         L   +++        +  +            
Sbjct: 368 FARKN---VYVVVG----CGGDRDRTKRPLMAKVAVQYADVAIFTSDNPRSEDPEQILRD 420

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K--------SSNSCGF-YRLI- 461
           ++  +P   +V           +      +GD+V++  K              F  RL+ 
Sbjct: 421 MEAGVPGERYVTIV-DRKEAIYYAIEQAQEGDIVLIAGKGHETYQIIGDRVIAFDDRLVA 479

Query: 462 -NLLLEEFP 469
              + E   
Sbjct: 480 REAIKERKK 488


>gi|319791795|ref|YP_004153435.1| UDP-N-acetylmuramoyL-tripeptide--D-alanyL-D-alanine ligase
            [Variovorax paradoxus EPS]
 gi|315594258|gb|ADU35324.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
            [Variovorax paradoxus EPS]
          Length = 1592

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 108/477 (22%), Positives = 195/477 (40%), Gaps = 33/477 (6%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSR-----SIAPQ-EAFFA-----IKG-P 49
            P+WT   L Q   G  +   P    V  +    R      + P    F A     +    
Sbjct: 1108 PVWTADQLAQITGGQWLVPPPAGWSVQSVV---RLPMHLKVRPGPALFVASDYRTLAAHE 1164

Query: 50   HY-------DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++       D HD +     + AG +V              P+  V D + AL  L  AA
Sbjct: 1165 NFSHAPEDWDQHDDLPRLHTQCAGAIV---QHAVEGLPPDFPLLQVPDPIRALLSLGAAA 1221

Query: 103  RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            R R K  ++ +TG+VGK++T  M+   L    +    + + N+ +GVP  +A +  DVD 
Sbjct: 1222 RARYKGLVVGVTGTVGKSSTIAMVRDLLPPGARVLTTVENNNSRVGVPGAMASLGPDVDV 1281

Query: 163  GIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E+  S L   R       RPH+A++T +  +  +  + +E+ A  K+  F GLE  G
Sbjct: 1282 CILEMAQSALWMDRGPISLEARPHVAILTEVGLSQTAKTNTLEKTAEYKSRAFLGLEPGG 1341

Query: 222  TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               ++        +   +       +++ G     + +L   +  S    + +  +G+  
Sbjct: 1342 IAVVSGHIPHLAKVVKAAMRTAA-KVWTVGTGPGDNIRLLDARPESSGCRVRLSFKGRIH 1400

Query: 282  EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL-SVFHPKEGRGKRYRCALNQGFFT 340
            E +       + +N  +    +  +  D + A   + +V  P            +    T
Sbjct: 1401 EYLFPVASIGLVRNSALAFAAIVAMGFDAEEASARMPNVRLPASVMQVEPLRTRSGALVT 1460

Query: 341  LIDESYNANPASMKAAISVLSQISPHGEGRRIA----VLGDMCEMGELSQSFHIDLAEVL 396
            L+D+S+NA   SM+ A+S +           +A    VLG +  +GE +++ H  LAE L
Sbjct: 1461 LVDDSWNAEVMSMRNAMSFVRSYRAPSGNAPVARKVGVLGRIVNLGEQAEAMHRGLAEPL 1520

Query: 397  SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                I+H+   G  +  L++ +P S+   + +    L L++   L DGD+++VK   
Sbjct: 1521 LASGIAHLVTHGDEMRWLREEVPTSLLGPHFDNAAELTLYLGEYLRDGDLLLVKGDR 1577


>gi|229083523|ref|ZP_04215861.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
 gi|228699777|gb|EEL52424.1| UDP-N-acetylmuramyl pentapeptide synthase [Bacillus cereus
           Rock3-44]
          Length = 335

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 158/343 (46%), Gaps = 11/343 (3%)

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L++  K     G++NNHIG+PLT+  +  + +  + E+GMS LGEI FL+ L RP+
Sbjct: 1   MTSLLATKFKVQKTEGNFNNHIGLPLTILSLEENTEMAVLEMGMSSLGEIEFLSKLARPN 60

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I  AHL +    + IA AK EI  GL+  G    N D+          +     
Sbjct: 61  AAIITNIGEAHLMDLGSRDAIAEAKLEIVTGLQNGGVFVYNGDEPLLTNRVPNMNLAAET 120

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +FG ++  D+        +  ++ ++     ++      +G H   N L ++ I   
Sbjct: 121 I--TFGDARANDYYPTSVTLQATGTYFKMNQDKDTVFY-LPVLGKHNVYNTLASMAIAKY 177

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +  
Sbjct: 178 FGVTWEEMKQGL---VTLQMTGMRMEIVKTNNGLTVINDAYNASPTAMEAAFHLMNGLDG 234

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSI 422
             +   + VLGDM E+G+    FH ++ +++    IS+V+  G     + +         
Sbjct: 235 FAKK--VVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGRLGAQIAEGAKINFPKE 292

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            V   +  + L   +Q+ + + DVV+VK+S       +I +L 
Sbjct: 293 RVKVYDNKEELVKELQTVIDEKDVVLVKASRGMKLEEIITMLK 335


>gi|311068038|ref|YP_003972961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
 gi|310868555|gb|ADP32030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus atrophaeus 1942]
          Length = 490

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 90/462 (19%), Positives = 162/462 (35%), Gaps = 46/462 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       +  I +DSR +     F  +KG   DGHDF   AV+ GA  +V   ++    
Sbjct: 16  VNDFHDPDITSIEMDSREVKTGSLFVCVKGYTVDGHDFAQKAVENGASAIVAEREL---- 71

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             +S+PV  V +   AL+ L+ A   +   +  +I ITG+ GKT+T  M+   L    K 
Sbjct: 72  -DVSVPVTIVRNSQRALSVLSDAFYGQPTKQLQLIGITGTNGKTSTSHMVDEILKKAGKR 130

Query: 137 YACIGSYNNHIG---------------VPLTLARMPVDV-DFGIFELGMSHLGEIRFLTH 180
              IG+    I                +  T  +M  +  D  I E+    L   R    
Sbjct: 131 TGLIGTMYIKIDEETFPVKNTTPESVTLQKTFKKMNDNHVDTAIMEVSSHALSMGRVHGC 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                IAV T +   HL     ++E   A +      G             +  +   A 
Sbjct: 191 DYD--IAVFTNLTQDHLDYHKTMDEYRQAKSLLFSQLGGAFNHEKPKRAILNADDEASAY 248

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    I ++G   +AD   +  K  ++ +  E+     +  +    +G     N+L 
Sbjct: 249 YEKVTAAHISTYGIKNDADVMAKHIKTTAQGTSFELVTNKGTKPITISLVGQFNVYNVLA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +          +T  +A+   H   GR +                 Y   P S++  + 
Sbjct: 309 AVATCIAAGIPFETVAEAVEELHGVRGRFELVNKNQEFPVIVD----YAHTPDSLENVLK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
               +    EG+   V+G     G+  ++    +A++        ++ S        LA+
Sbjct: 365 TCKDM---TEGKVFVVVG---CGGDRDKTKRPKMAKIAVQLADEPIFTSDNPRSEDPLAI 418

Query: 415 ---KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +A   + + H     +    F  ++   GDVV++  K 
Sbjct: 419 LRDMEAGVENEYYHSIANREQAIFFAIANARKGDVVLIAGKG 460


>gi|258510307|ref|YP_003183741.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477033|gb|ACV57352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 489

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 158/476 (33%), Gaps = 42/476 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               +  QG++ G++IDSR + P + + AI+G   DGH FI  AV +GA  VV   D   
Sbjct: 7   ELERLRAQGWIRGVAIDSREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASL 66

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 +P   V     A + L+           T++ +TG+ GKTT+   LT  L    
Sbjct: 67  VDVPPDVPYVRVTSARRAASALSNRVYGFPSRHLTVVGVTGTNGKTTSVHWLTHVLRFAG 126

Query: 135 KTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFELGM--SHLGEIRFLTH 180
                + S  N  G+            P     +   VD G     +  S  G ++  T 
Sbjct: 127 MRVGMLSSVFNETGLRTVPAKLTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTS 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            V   +A+ T +   HL     +E  A+AKA +F G   +     LN DD + +++    
Sbjct: 187 DVDFDLAIFTNLTREHLDFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENC 246

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +      G  +    +   W+                 ++        M     + 
Sbjct: 247 VAPIVTYGVRSGDVRGRVVETDGWR------TRVSIRLPNGEKLEGVLHHPGMYNLYNLL 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + +     V     A  +       G+ +      G   ++D ++  +         +
Sbjct: 301 AVVAAAYVLGVSADDIAGVIPTLPTIPGRMHVIRPEHGPTVIVDYAHTPDA-----LRQI 355

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
           LS       GR   V G     GE  +    ++  + +      +  +          + 
Sbjct: 356 LSTARQWTSGRVWLVFGG---RGERDRGKRPEMGAIAASMADHVLITTDSSYSEDPERIA 412

Query: 416 -DALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            + L  +  VH +                    D DV+++        ++++  L 
Sbjct: 413 NEILAGAQRVHRARCDVVLDRAQAIERAVIEANDEDVILITG-RGHESFQVVGGLR 467


>gi|301063230|ref|ZP_07203779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
 gi|300442658|gb|EFK06874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [delta proteobacterium NaphS2]
          Length = 500

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 161/484 (33%), Gaps = 52/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ I   ++       ++ I+ DSR I P + F A+KG   DGHDFI  AV+KGA 
Sbjct: 3   LRELIENINIKTLSGGLDLEISHINYDSRRIEPGDLFVAMKGQSLDGHDFIGDAVRKGAV 62

Query: 67  LVVVNTDMVASIGSLSI------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
            V+      A    L+        +  V+D   AL++LA            +I ITG+ G
Sbjct: 63  AVLSELKTDAIARKLACESDQMPVLLQVEDSRKALSQLAATFYGHPFRTMNLIGITGTNG 122

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDF 162
           KTTT  +L   L++  +    IG+ N  IG                              
Sbjct: 123 KTTTSYLLEFILAAAGRNPGVIGTINRRIGQLCFKSSVTTPESLDLMKILREMADQSATD 182

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTG 221
            I E+    L + R      R  +A+ T I+  HL     +++   AK+ +FEG   +  
Sbjct: 183 VIMEVSSHALDQGRVADCPFR--VALFTNISRDHLDYHHSMDDYFRAKSLLFEGLGNRGN 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKS 280
                   +  +       AL      ++G   + D   +      +      +  + + 
Sbjct: 241 QGAACAVINTDDPWGKHLMALTPARTVTYGLGNSCDVTAKDVSVSRKGLHARLIFEKREE 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    IG     N++        +  D    +  +       GR +      +     
Sbjct: 301 IDIRSSLIGNFDIYNIMAAASAAMAMGVDSKAILLGIERMKGVPGRMELVPNDRSLAIIV 360

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               + +A           L+       GR + V G     G             ++  N
Sbjct: 361 DYAHTPDA-------LEKALAATKQITSGRILTVFG----CGGDRDKGKRYEMGRIAGAN 409

Query: 401 ISHVWLS-----GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++++          ++ D + + +      +       +           + D+V++
Sbjct: 410 SHRIFVTSDNPRSEDPASIADQIEKGVIASGHQNYVIELDREKAIRMAVREAANDDLVLI 469

Query: 450 --KS 451
             K 
Sbjct: 470 AGKG 473


>gi|260912998|ref|ZP_05919483.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
 gi|260632988|gb|EEX51154.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Pasteurella dagmatis ATCC 43325]
          Length = 493

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/452 (17%), Positives = 151/452 (33%), Gaps = 46/452 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           DSR+  P   F A+KG   DG  +I  A++KGA  V+   D       +     +PV   
Sbjct: 25  DSRTAEPGCLFVALKGHQVDGRQYISQAIEKGASAVLSEADNADQHLQIEWHQDVPVIQF 84

Query: 89  DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             +   L+++A         K T+I +TG+ GKTT  ++L      +  T A +G+  N 
Sbjct: 85  YQLAQRLSEIADHFYLYPSDKLTLIGVTGTNGKTTISQLLAQWTKLLGHTSAVMGTIGN- 143

Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   +          +                  + +S  G ++     +   +A+ T
Sbjct: 144 -GLFGQVKEAANTTGSAVEIQSSLAKFLEQGSDFVAIEVSSHGLVQHRVEALDFDVAIFT 202

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E  A+AK  +F  L+    I    D    E L     A+ +     F
Sbjct: 203 NLSRDHLDYHLTMENYAAAKKRLFTELKPKHQIINADDPVGVEWLAELGSAVAVSCREDF 262

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++    +  K    ++ + ++ +    + E+    IG     N+L+    +  L  D 
Sbjct: 263 HPTQKKWLKATKITFNNKGAHIQFESSWGNGELHSGLIGEFNVSNLLLVFATLLSLDYDF 322

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  ++  S      GR +    +           + +A           L     H +G+
Sbjct: 323 DELLRTASSLTGVCGRMEMLTQSNQPTAIVDYAHTPDA-------LEKALQAARLHCQGQ 375

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
              V G     G    +    L   ++      V ++  +         +  +       
Sbjct: 376 LWCVFG----CGGDRDTGKRPLMAHIAERLADKVIVTDDNPRTEAAEKIMQDILLGFEDQ 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V      +    F        D +++  K 
Sbjct: 432 SAVKILHDREQAIAFAIEQADPEDTILIAGKG 463


>gi|254446741|ref|ZP_05060216.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256166|gb|EDY80475.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 523

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/464 (17%), Positives = 152/464 (32%), Gaps = 44/464 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +   P   ++ ++IDSR + P   FFA+ G   DG+ F+  A+ +GA  V+ +     
Sbjct: 42  KLLKGQPDPRISRLAIDSRRVVPGSLFFALSGLKSDGNSFVDEAISRGAVAVISSQARR- 100

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
              S  +    VD+    L  ++ A         +++ ITG+ GKTT   ++   L+++ 
Sbjct: 101 -FRSAKVAYLTVDNPRLVLAAVSRAFYDHPDKDLSLVGITGTNGKTTVAYLVKQILANLG 159

Query: 135 KTYAC---IGSYNNHIGVPLTL-------------ARMPVDVDFGIFELGMSHLGEIRFL 178
           + Y C   +G       VP                     +    + E+  S  G  +F 
Sbjct: 160 QRYGCLGTVGYDLVRRTVPSFRTTPESHDLCGLLSQMRDFECRGAVMEV--SSHGIDQFR 217

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   +     +   HL     +E   + K   F G           +       +  
Sbjct: 218 VSGLGFEVGAFLNLTRDHLDYHQDMESYYAVKRRFFNGESGPLPKVAVVNIDDPYGKRLV 277

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S       I +FG+++ A F+  + +  SE S            V    +G +   N L 
Sbjct: 278 SEIPEQVAILTFGETEGAAFRASEIELSSEGSEFRFTTPLGDFAVKTSLVGDYNVSNTLA 337

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I S L  +++  I+ L  F    GR    +        T++ +  +   A      +
Sbjct: 338 ALTICSGLGLNIENCIEDLDSFPGIPGR---MQKVEAGQAATVLVDYAHTEDA----LQN 390

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---------SGF 409
            LS +     G+   V G     G             ++       W             
Sbjct: 391 ALSMLQGVTVGKLRVVFG----CGGNRDRGKRPAMTKVANTLADEAWATSDNPRNEQVED 446

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K+ L     VH+             +   GD +++  K 
Sbjct: 447 IFADMKEGLVDPERVHFVPDRRRAIELALEASHAGDCLLIAGKG 490


>gi|169825241|ref|YP_001692852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
 gi|167832046|dbj|BAG08962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Finegoldia magna ATCC 29328]
          Length = 478

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/507 (15%), Positives = 158/507 (31%), Gaps = 73/507 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L  I            +  ++ DSR I     F AI G  +DGH FI  A+  G
Sbjct: 1   MNLTDILDKIDYIDYTKNNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
              +VV  D+     +  I    V D   AL +++         K  +I +TG+ GKTTT
Sbjct: 61  TNTIVVTEDVSQ---NEGINYIKVKDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSY-----NNHIGVPLTLARMP-----------VDVDFGIFE 166
             M++  L  +      IG+            P T   +              +D  + E
Sbjct: 118 ASMISHILEHLNSPCTNIGTNGTFIAKEKYETPNTTPEICEINKILKLSVEKKIDNAVVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S  G        +   +AV   ++  H+     +E    AK  +FE           
Sbjct: 178 C--SSHGLYLHRLDGIDFDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AK 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +      +  Y+F     +DF+    +    +    +  + K+++ V +
Sbjct: 228 KKIANVDDEYGRKAKARFEDAYTFSLENESDFKAENVELIDGK----MHFEIKNVKFVLN 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N +  +  V++L  ++    K+L  F   E R +  +  +          + 
Sbjct: 284 RFALFDVYNAVAAIVAVNLLGYELKDIAKSLESFTGVEARFEFVKNDMGINIVIDFAHT- 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +  +        +R   +  M   G+ ++    ++ ++ +  N+  V  
Sbjct: 343 ---------PKAFENIYKSVPNDKRKIAVYGMS--GDRTREIRHEVGKISAENNVFSVVT 391

Query: 407 SGFHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS-NS 454
           +        + +           +      +              DGD V++  K   N 
Sbjct: 392 TDDPKFDTYENIADDIVSGIEEENGEYVRIKDRKSAIKHAIEMANDGDFVLLLGKGQENF 451

Query: 455 CGF--------------YRLINLLLEE 467
                              +++ L  +
Sbjct: 452 IKLKGNEKTPYSEKETVNEVLDELKNK 478


>gi|189461558|ref|ZP_03010343.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
 gi|189431764|gb|EDV00749.1| hypothetical protein BACCOP_02217 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 156/476 (32%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++++    I       + GI +DSR +     F A+KG   DGH +I  A++KG
Sbjct: 1   MKLENIIESVNVCEIKGNVDKEIAGIQMDSRLVEAGHLFVAVKGTQTDGHAYIEKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V  T  +    +  +    V D   A+ KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ASAIVCET--LPDTLNEHVTYIRVADTEDAVGKLATTFYGDPTSKLDLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELG 168
             +L                            ++    P+TL R+     D       + 
Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDGEAIPTDHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T I   HL      E    AK   F+ L KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKTAFALTNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     I ++      +F+ +  +   E     + +   + EV    I
Sbjct: 239 DKNGSVMVQNTKA----KIATYSLRTLCEFKGKVLEDGFEG----MLMDINNREVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  +  LS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGAACLLGKQPEDVLLILSTLRPVAGRFDALRSKKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL      G GR I V+G     G         +    +      V ++ 
Sbjct: 351 LVNVLNAIHEVL-----KGRGRVITVVGA----GGNRDKGKRPIMAQEAAKQSDRVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                   GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLTKEDMDKVLSIADRKEAIRTACMLAQAGDVILVAGKG 457


>gi|77361424|ref|YP_340999.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876335|emb|CAI87557.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 492

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 142/478 (29%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +L+ I+       P   V  + +DSR + P + F AIKG   DG  FI  A++ 
Sbjct: 1   MRDLKAILKYIEI----DAPSQQVGHLRLDSREVTPGDVFVAIKGHQLDGGQFIAKAIEN 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  ++ +            P++ V ++   L +LA     +      +I +TG+ GK+T
Sbjct: 57  GAVAIIADRLCEFETSFE--PLYLVSELTKKLPELASRFYQQPSHMLDLIGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T  M+     +               G P  L  +       +                 
Sbjct: 115 TTAMIAHL--AQFCNSQSAIIGTLGYGHPDNLTPLINTTPSSVDLQRILNDLKQQNTKLV 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++      +   AV T ++  HL     +     AK  +F+  E    +  
Sbjct: 173 AMEVSSHGLVQQRVAQCQFKAAVFTNLSRDHLDYHGDMARYGDAKLMLFKDFEPELVVLN 232

Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D    + L+  S    +     +                 ++    ++      + + 
Sbjct: 233 QDDGQTDQWLEKYSFNSLVCYGRKNLPPKNAQFVYFSDVTYSAQGIAAQLTTSWGDIAIK 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+   L  +  L   +   I   +   P  GR + +              
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLAQLIAGCAQLQPVAGRMQAFSAKGKPTCIVDYAH 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +        +A    L  +  H  G    V G     G         L    +  N   V
Sbjct: 353 TP-------EALALALQALQQHVPGGVSCVFG----CGGDRDKGKRALMAQAAEQNADKV 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L +    +          +  S+    +V+++  K 
Sbjct: 402 IITSDNPRSENPDAIIADVAQGLAQPTKAYLEADRATAISYAISNAKADEVILIAGKG 459


>gi|134095975|ref|YP_001101050.1| D-alanine:D-alanine-adding enzyme [Herminiimonas arsenicoxydans]
          Length = 371

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 16/375 (4%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVP 150
           AL ++A   R +    +I +TGS GKTT KEM+   L +           G++NN IGVP
Sbjct: 2   ALGEMASYWRRQFNLPLIGVTGSNGKTTVKEMIAAILDAAFGPDNYLATRGNFNNDIGVP 61

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           LTL R+       + ELGM+H GEI  L+ + +P + ++      H      +E +A   
Sbjct: 62  LTLLRLNAACKAAVIELGMNHPGEIAVLSAIAQPTVGLVNNAQREHQEFMESVEAVAQEN 121

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +   L   G      DD+F  L ++ +         +FG S +AD +          +
Sbjct: 122 GAVLASLPADGVAVFPADDAFTPLWRSYAAQRKTL---TFGFSADADVRCTYAANVF-GN 177

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            M V    +   +     G H  +N L  +     +    +  ++ L  F P  GR    
Sbjct: 178 DMSVTAGNQKFTIALSAAGVHNVRNALAAIACTLAIGIAPEAIVRGLQAFAPVSGRL--- 234

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +  L      +ID++YNANP S++AAI VL+Q++      RI VLGDM E+G   + +H 
Sbjct: 235 QRKLAASGALVIDDTYNANPDSVRAAIDVLAQMAS----PRILVLGDMGEVGNDGRQYHE 290

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           ++        I HV   G        A        + ++++ L   + +       V+VK
Sbjct: 291 EIGAYARANGIEHVLALGELARHTVSAFGAG--AQHYDSVEALNDALAAIFAADATVLVK 348

Query: 451 SSNSCGFYRLINLLL 465
            S      R++  LL
Sbjct: 349 GSRFMKMERVVQHLL 363


>gi|300774442|ref|ZP_07084305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
 gi|300506257|gb|EFK37392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chryseobacterium gleum ATCC 35910]
          Length = 486

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 155/473 (32%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+  I    I       +  + IDSR +     + A++G   DGH FI  A++KGA 
Sbjct: 3   ITELVNRIPVLEIHGDNSREITELVIDSRKVTEDSLYVAMRGTVVDGHSFITSAIEKGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VV     +    + ++    V D   AL  LA         K  +I +TG+ GKT+   
Sbjct: 63  AVVCEE--LPETLAENVTYILVKDSSKALGYLASNYYGNPSQKLKLIGVTGTNGKTSVST 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFE---LGMS 170
           +L     ++    A + +    IG             +T+ R+  +      E   + +S
Sbjct: 121 LLFDVFKNLGYPAALLSTVEIRIGEEIIPATHTTPDVITINRILAEAVEKGCEFAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +   IA  T +   HL      EE    K   F+ LE T     N DD 
Sbjct: 181 SHGIAQNRIEGLHFKIAGFTNLTHDHLDYHKTFEEYLKTKKRFFDELEDTAIAITNVDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       S+     AD+  +  +       +    +     +     G 
Sbjct: 241 NGNVMLQNTKAKKK----SYALKTMADYHGKLLEVDFNGMLLNFNGKEFWTTLT----GK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+  GI + L  + D  ++A+S      GR + ++      F       Y   P
Sbjct: 293 FNVYNLLLVFGIAAELGFEQDEILQAISKLKRVSGRFETFKSDGGIFFIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +  ++ I    E             G+   S   ++  + +  +   +  S   
Sbjct: 349 DALENILDSINDIRTKNERLITV----FGCGGDRDHSKRPEMGNIATKKSTLAIITSDNP 404

Query: 409 --FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   +   +                            D+V+V  K 
Sbjct: 405 RTEDPTQIIKEIEAGVEPQNFSKYTSIPDRKEAIKMAIKFAEPKDIVLVAGKG 457


>gi|307256034|ref|ZP_07537822.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306865456|gb|EFM97351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 500

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|163752981|ref|ZP_02160105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
 gi|161326713|gb|EDP98038.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kordia algicida OT-1]
          Length = 487

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/476 (14%), Positives = 154/476 (32%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +   ++       V  +  DSR +   + F AIKG   DGH +I  A++ 
Sbjct: 1   MKTLKDILYKVHIEAVTGDTTIAVRELVFDSRKVQLNDVFIAIKGYEVDGHSYIEKAIKA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+     +       I    VD+   AL  +A            +I +TG+ GKTT
Sbjct: 61  GAIAVICEE--IPKNIINGITYVQVDNGSSALAVMASNYYGNPSENLKLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFG-IFEL 167
              +L                            ++     + +      ++ +      +
Sbjct: 119 IATLLYQLFKKAGYKVGLLSTVKILVDDKEYKATHTTPDSLTINSYLQKMNHEGVEYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     + T ++  HL       E    K + F+ L K     +N 
Sbjct: 179 EVSSHGIHQKRTAGLVFQGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKEAFCLVNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      Y++     AD++ +  +       +++       +++   
Sbjct: 239 DDKNGLVMMQNTKAKK----YTYALKTYADYRAQILENRLAGLLLKINDNEVWTKLIGSF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++         +           I+ L +    E    R+   +++   T I + Y 
Sbjct: 295 NAYNLLSIYATAELLGLE-------EIEILRLISELESVSGRFEYFISKNKITTIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     V       G+   +    +  + S  +   ++ S
Sbjct: 347 HTPDALKNVLETINNIRTGNEQLITVV----GCGGDRDTTKRPKMGNIASTLSTKAIFTS 402

Query: 408 G----FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +A+ +                            + D++++  K 
Sbjct: 403 DNPRSEDPMTIIEAIEKGVEPQNYKKTLSITDRKQAIKTACQMANENDIILIAGKG 458


>gi|120437107|ref|YP_862793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
 gi|117579257|emb|CAL67726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gramella forsetii KT0803]
          Length = 488

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/473 (15%), Positives = 152/473 (32%), Gaps = 45/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       +N I  DSR +   + F AI+G   DGHD+I +A  +GA 
Sbjct: 4   LKDILYKVNMKAVTGDTGVTINNIHFDSRKVQLNDVFIAIRGSISDGHDYIKNAENQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +V        I    +    V+D   AL  ++         K  ++ +TG+ GKTT   
Sbjct: 64  AIVCEKIPDEVIN--GVTYIEVEDTKRALAYISANYYDNPSEKLKLVGVTGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170
           +L    +        + +    +G                 +  +   DV      + +S
Sbjct: 122 LLYDLFTKAGFKCGLLSTVKVMVGNDEHTAIRTTPDSITINSYLKDMNDVGVEFCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  ++    + T ++  HL       E    K   F+ L  +     N DD 
Sbjct: 182 SHGIDQHRTTALKFEGGIFTNLSHDHLDYHKDFAEYRDVKKRFFDELPASAFALTNVDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E++   + A      +++     AD++ +  +       ++V  Q    +++      
Sbjct: 242 NGEIMLQNTKAKK----HTYALKSFADYKAQILENNFTGLLLKVDDQELWTKLI------ 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L I ++        ++ L +         R++  +++         Y   P
Sbjct: 292 -GNFNAYNVLAIYAMADLLGLKTLEILRIISELNSVSGRFQYVISEKEKITAIVDYAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E     V       G+   +    +  + S  +   V+ S   
Sbjct: 351 DALKNVLETINSIRTRNEELITVV----GCGGDRDTTKRPKMGHIASALSTKVVFTSDNP 406

Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +                                D++++  K 
Sbjct: 407 RTEDPDKIIEEVEGGVEPQNFKKTMSVTNRKQAIKTACQMAGQNDIILIAGKG 459


>gi|332976984|gb|EGK13797.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Desmospora sp. 8437]
          Length = 474

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 111/460 (24%), Positives = 188/460 (40%), Gaps = 30/460 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISI-DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T +  +Q I G  +       + G ++   R +A  + +F  K   +D         ++ 
Sbjct: 29  TLNQCIQIIGGTLMRGDGSRILRGANLGKPRRLAKNQIYFYSKSRSWD---------KQL 79

Query: 65  A-------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A          V+   +  S    S+ +  V DV  A+ +LA     + +  + A+TGS 
Sbjct: 80  AGLQSTPPAAAVLPEGISWSSIPKSVAIVRVSDVNQAIWRLANWNWRQVRPQVAAVTGSA 139

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  M+T  L   ++     G+ N    +P  L R+    +F + E+GM     I  
Sbjct: 140 GKSTTTSMVTSILKRSRRVVHTQGNLNTFTYLPSYLLRLSPGDEFLMLEMGMKSFNNIAR 199

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              +VRP +  +T +  AH     G+  +  AK E+ +GL    T++LN D    + L  
Sbjct: 200 QCRVVRPEVGAVTNVGEAHAGQLGGVHRVVKAKQELIDGLRPGATLYLNADCLRSKQLST 259

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     +   Y+FG    AD Q    +  +     +V  +GK         G H   N L
Sbjct: 260 RRFRGSV---YTFGIRNPADIQGSNIQYSTNGVSFDVMTEGKRGRFFIPTWGDHNVLNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +GI   L          L+     +    R +        TLI++++NANP++MKA +
Sbjct: 317 AAIGIARALGIGFHQIRDGLAK---VKLPRMRLQRIRGSHGRTLINDAWNANPSAMKAGL 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL--- 414
           SVL  +S    G  IAVLGDM E+G  +++ H ++    +  N+  +   G     +   
Sbjct: 374 SVLRYLSSKRPG--IAVLGDMMELGGYTRAGHREVGRFAARMNLHQLITYGQKAREIGRT 431

Query: 415 -KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              A      V +      L   + S+   G V+  K+S 
Sbjct: 432 ALAAGMDPHRVRHFSNRGALLRHLLST-PAGSVIYFKASR 470


>gi|327313075|ref|YP_004328512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
 gi|326945062|gb|AEA20947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola F0289]
          Length = 484

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 149/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I       + G++IDSR I     F A+KG   DGH FI  AV++G
Sbjct: 1   MKLSELLRNISPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V++    +      ++    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AAAVLLE--NLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y N   VP                           + 
Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL K      N D
Sbjct: 179 CSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMFMVQNTKASVK----TYSIKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S      GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   ++ +  +     G  I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALANVLAAIHDVLDSKGGHVITVCGA----GGHRDKGKRPLMAQEAVRQSDTVILTS 402

Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D         +   V                   GDV++V  K 
Sbjct: 403 DNPRDEDPQAIIDDMLAGLDFTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 458


>gi|302344986|ref|YP_003813339.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
 gi|302148992|gb|ADK95254.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella melaninogenica ATCC 25845]
          Length = 485

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +        + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIENGHLFIAMKGTQVDGHKFISKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++    +    +  +    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAILLED--MPEELNEKVTYIQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y N   VP +                V+       + 
Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL KT     N D
Sbjct: 179 CSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEG----MYLEVDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S      GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P +++  +S +  +     G  I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALENVLSAIHDVLDGKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402

Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D +           V                   GDV++V  K 
Sbjct: 403 DNPRDEEPQAIIDDMLAGLDTTQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKG 458


>gi|15965934|ref|NP_386287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium meliloti 1021]
 gi|307308244|ref|ZP_07587953.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
 gi|307319711|ref|ZP_07599136.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|21362707|sp|Q92NL6|MURE_RHIME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15075203|emb|CAC46760.1| Probableudp-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Sinorhizobium meliloti 1021]
 gi|306894642|gb|EFN25403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           AK83]
 gi|306901242|gb|EFN31848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium meliloti
           BL225C]
          Length = 486

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 144/460 (31%), Gaps = 36/460 (7%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G      + GI+ DSR + P + F A+ G   DG  +I  A+ +GA  VV    
Sbjct: 14  LSAQLKGDAATIEIGGITADSRQVKPGDLFVAVAGSKADGAAYIADALSRGASAVVA--- 70

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              +      PVF + D    L K A +   R   T++A+TG+ GKT+         +  
Sbjct: 71  GTGTPAEAGAPVFAISDPRRFLAKAASSFYGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179
             + A I              +     P++L ++  +  D G+    +  S  G  +   
Sbjct: 131 GFSAAMIGTTGVVAPGRTEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQRRL 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V    A  T +   H+     +E   ++K  +F  L   G+  + + D  +      +
Sbjct: 191 DGVELAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAA 250

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + + G++ +     R      +QS             V           +   
Sbjct: 251 ARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHV----PLAGDFQIANA 306

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +   TA  A S     +G   R           L    Y   P ++   +  
Sbjct: 307 LVAAGLAMSTGITAKAAFSALERLQGASGRLELVGQTKDGALAYVDYAHKPDALANVLES 366

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
              + P   GR + V G     G         +   ++      V ++  +  +      
Sbjct: 367 ---VRPFTTGRVVVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPEVI 419

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 420 RAEIMAAAKGATEIGDRAEAIRAAVGMLKTGDTLIVAGKG 459


>gi|332829617|gb|EGK02263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 483

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 164/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I       + GI  DSR      AF A+KG   DGH +I +A+  G
Sbjct: 1   MKLKDLLKGIDIVEIKGNENLEITGIQTDSRKAIAGSAFIALKGVQVDGHQYINNALDLG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A +V+    +  S     I    V D   A  K+A        +K  ++ +TG+ GKTTT
Sbjct: 61  AKVVIHQEKVDTSRE--GITYIKVKDSADAAGKIATLWYGDPSAKLKLVGVTGTNGKTTT 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168
             +L                        +    +    PL+L  M   +     E   + 
Sbjct: 119 ATLLYEMFRKFGNKVGLLSTVANYIDGTVYHATHTTPDPLSLNEMLAKMVDAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T I   HL     + E   AK   F+ L +T     N D
Sbjct: 179 VSSHAIHQKRISGLKFDGGIFTNITQDHLDYHKTMAEYLKAKKMFFDNLPETAFALTNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A      Y++     ADF+ +  ++  + + +E   +    E+    +
Sbjct: 239 DKNGAVMLQNTKAKK----YTYSVKTLADFKAKIIEKHFDGTAVEFNNK----ELQVQFV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L  D D A+  LS   P  GR +  R   N          Y  
Sbjct: 291 GVFNVYNLLAVYGTAVLLGQDPDEALLILSTLKPVSGRFETLRSPENYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +  + ++   G GR I V+G     G         +    ++     V L+ 
Sbjct: 347 TPDALTNVLEAIHEV-LEGNGRVITVVG----CGGNRDKTKRPIMAREAVRLSDQVILTS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + D L              +       +   +GDV+++  K 
Sbjct: 402 DNPRFEEPQAIINDMADGLNSQQMKKTLLIVEREQAIKTACTLAKEGDVILIAGKG 457


>gi|49477781|ref|YP_036697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|49329337|gb|AAT59983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 493

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 159/483 (32%), Gaps = 54/483 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH---YDGHDFILHAV 61
               +L   +            + G+ +DSR I     F  + G +    D H F+  AV
Sbjct: 1   MKLKELTSLLLIKDTVGDMNIEITGLEMDSRKITSGNLFICVSGINGFLEDRHQFVEDAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A         K  +I ITG+ GK
Sbjct: 61  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYDYPSNKMKLIGITGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   LS        +G+    +G                          +VD+ 
Sbjct: 116 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNVDYC 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K       G + + 
Sbjct: 176 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKGLLFSRLGNDLST 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T       +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 234 TDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNGEI 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 294 EVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKRIEGRMEIIDENQDFLVIVD 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 354 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 402

Query: 402 SHVWLSGFHV---------LALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +            ++    ++ +++Y  E   +       +     D+V++ 
Sbjct: 403 DFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 462

Query: 450 -KS 451
            K 
Sbjct: 463 GKG 465


>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
 gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
          Length = 811

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 97/466 (20%), Positives = 165/466 (35%), Gaps = 51/466 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +LL A  G  +G          S DSR  AP E F AI+    DGHD+I  A+  GA
Sbjct: 4   TLAELLDA-GGTLVGPSVTDTFTDWSYDSRLTAPGECFIAIRTARADGHDYIPAALAAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+          + +  V    D    L + A         T++A+TG +GKT  +  
Sbjct: 63  RGVLCRRP---PHAADNATVIVCSDPQTVLLRWASNRLRALHPTVVAVTGGIGKTLARRA 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+ +  T+    ++N+ +G+P+ LAR+     + + E    HL     L     PH
Sbjct: 120 IAAVLTQLAPTFQSRRNFNSLLGLPIALARLRAHDRYAVLEFAGEHLSP---LVAAFPPH 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVIT  A            +    A   +     G                        
Sbjct: 177 LAVITPGADPQTVTLLQQHGVRVLSAAAADCYTIAGEFA--------------------- 215

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                        +        +      +  G  + +    +G       L  + +   
Sbjct: 216 ------------IRATDISFRRDGVTFIARGPGLELPIFTPLLGPPGVSAALAAIAVGLS 263

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +   +AL+   P  GR +  R    +    +ID+S+NA   +M AA+  L+ +  
Sbjct: 264 YHMSPEPIQQALTRLEPPAGRLRPLRGKNGEM---IIDDSFNATLPAMVAALQTLAALPA 320

Query: 366 HGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRS 421
                RIAVLG   E+  +  +    DL    +     ++ L G     +  A      +
Sbjct: 321 QR---RIAVLGTPAELPAIDPTPMLSDLGGQAARS-ADYLVLKGTGAATMVHAARLVKPT 376

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           I +H  +T     + + S    GD+V+V         +++  LL +
Sbjct: 377 IPIHVVDTNTAAQMSLPSDRGAGDLVLVSGGAGERLEQVVAPLLAD 422


>gi|237716644|ref|ZP_04547125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262405419|ref|ZP_06081969.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|294646200|ref|ZP_06723854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294809133|ref|ZP_06767851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
 gi|229442627|gb|EEO48418.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D1]
 gi|262356294|gb|EEZ05384.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_22]
 gi|292638418|gb|EFF56782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CC 2a]
 gi|294443687|gb|EFG12436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides xylanisolvens SD CC 1b]
          Length = 482

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K+     N DD 
Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++      DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R  L           Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPLGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTISIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|325856502|ref|ZP_08172191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
 gi|325483471|gb|EGC86444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella denticola CRIS 18C-A]
          Length = 484

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 88/476 (18%), Positives = 149/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +   +I       + G++IDSR I     F A+KG   DGH FI  AV++G
Sbjct: 1   MKLSELLKNVSPIAIHGNTDVEIKGVNIDSRRIENGHLFIAMKGTQVDGHRFIGKAVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V++    +      ++    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AAAVLLE--NLPDTLDENVTYIQVTSTEEDAGKVATMFYGNPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y N   VP                           + 
Sbjct: 119 ATLLYNMFRKFGYKAGLLSTVCNYINDEEVPADHTTPDPIELNYLLARMAAAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL K      N D
Sbjct: 179 CSSHAIHQRRISGLTFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMFMVQNTKASVK----TYSIKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S      GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGTAVLLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   ++ +  +     G  I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALANVLAAIHDVLDSKGGHVITVCGA----GGHRDKGKRPLMAQEAVRQSDTVILTS 402

Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D +           V                   GDV++V  K 
Sbjct: 403 DNPRDEDPQAIIDDMLAGLDSTQKKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 458


>gi|307244814|ref|ZP_07526913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307253768|ref|ZP_07535622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307258225|ref|ZP_07539968.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306854259|gb|EFM86465.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306863252|gb|EFM95192.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306867685|gb|EFM99530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 500

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQDAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|254722567|ref|ZP_05184355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
          Length = 492

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 158/485 (32%), Gaps = 58/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161
           GKTTT  +L   LS        +G+    +G                          + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219
           + + E+    L   R      +  IAV T +   HL      +E    K+      G   
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +         +  +        +    + ++G    AD Q +      +     V     
Sbjct: 232 STIDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      +    
Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A         +VLS I    +G+ I V G     G    +    +   ++  
Sbjct: 352 VDYAHTPDA-------LENVLSTIREFAKGKIITVFG----CGGDRDAKKRSIMGGIAGS 400

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448
               V+++  +         +  ++    ++ +++Y  E   +       +     D+V+
Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 460

Query: 449 V--KS 451
           +  K 
Sbjct: 461 IAGKG 465


>gi|223985673|ref|ZP_03635721.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
 gi|223962364|gb|EEF66828.1| hypothetical protein HOLDEFILI_03027 [Holdemania filiformis DSM
           12042]
          Length = 491

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 160/460 (34%), Gaps = 42/460 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                P   +  + +DSR + P   FF IKG  +DGH ++  A++ GA  VV + D+   
Sbjct: 6   LFDNAPDIEIENLMVDSRDVLPNSIFFCIKGMIHDGHRYVNAAIKNGAVCVVHSEDI--K 63

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135
             + ++    V DV  ALN++A          ++   +TG+ GK++   M+   L+ +  
Sbjct: 64  RNNANVVYIKVRDVTAALNQVAACFYGYPSKKMVVYGVTGTNGKSSIACMIRNLLNPVYA 123

Query: 136 TYACIGSYNNHIG--------VPLTLARMPVDVDFGIFELGM-----SHLGEIRFLTHLV 182
                     +           P  +    +  D     +       S +G  +  T  V
Sbjct: 124 CGYIGTISIEYGDTKLPPLLTTPDIVPLQQILHDMAQAGMKACALEISSIGLEQHRTDSV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IA+ T +   HL     +E    AK  +F+ L+  GT   N DD     + A   A 
Sbjct: 184 DVDIAIFTNLTHDHLDYHGTMENYFEAKKRLFDQLKPDGTAITNKDDPHGMAIVADCPA- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + ++G  + AD++ +  +  ++++   +   G    V  + +      N+L  +  
Sbjct: 243 ---RVVTYGVLEKADYEAKDIQLNADKTIFTLVHDGSEYPVQTNLVAMFNLYNLLAVIAA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      ++  ++ L+     EGR +R                +   P  ++      S 
Sbjct: 300 LHEGGLPIEQILEQLNTIPQIEGRMERIEEGQPFNIIVD----FAHTPDGLEQIFKFASA 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413
           I+P  +     V G          +    +   L+      + L+               
Sbjct: 356 ITPKEKRIIS-VFGSAG----KRDTKKRPVFGQLADKYCDLIILTEDDPRDEDPIQIAEE 410

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   + ++  +   E+              GD +++  K 
Sbjct: 411 IAAGIQKTNRIII-ESRYDAIRQAVEVANVGDTILILGKG 449


>gi|165975471|ref|YP_001651064.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|165875572|gb|ABY68620.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 500

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGVDFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|288801602|ref|ZP_06407044.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
 gi|288335644|gb|EFC74077.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella melaninogenica D18]
          Length = 485

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +        + G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLSELLKNVKVIASQGNIDVEIKGVNIDSRKIKNGHLFIAMKGTQVDGHKFISKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++    +    +  +    V        K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAILLED--MPEELNEKVTYVQVASTEEEAGKVATMFYGEPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y N   VP +                V+       + 
Sbjct: 119 ATLLYRMFREFGHKVGLLSTVCNYINDEEVPASHTTPDPIELNCLLAKMVEAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL KT     N D
Sbjct: 179 CSSHAIHQHRIGGLEFVGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKTAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIKRMADFRAKILECHFEG----MYLEVDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S      GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLIAMSTLKSVNGRLEPIQSPEGYTAVVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P +++  +S +  +     G  I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALENVLSAIHDVLDGKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402

Query: 408 ----GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D +           V                   GDV++V  K 
Sbjct: 403 DNPRDEEPQAIIDDMLAGLDATQRKKVLTITDRKEAIRTAAMMAQKGDVILVAGKG 458


>gi|332885963|gb|EGK06207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Dysgonomonas mossii DSM 22836]
          Length = 483

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 162/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I       V G+  DSR   P   F A+KG   DGH +I +A++ G
Sbjct: 1   MKLQDLLKNIDVIEIKGEQDINVTGVFTDSRKATPGSVFIALKGVQVDGHLYIKNALELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A +++   +      +  I    V D   A  K+A        +   ++ +TG+ GKTTT
Sbjct: 61  AKVIL--HENKIDTSNEGITYIKVKDSADAAGKIATHWYGDPSNNLKLVGVTGTNGKTTT 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168
             +L                        +    +    P++L  M  ++     E   + 
Sbjct: 119 ATLLYEMFRKLGYKVGLLSTVANYIDGKVYHATHTTPDPISLNEMLKNMVDAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     + E   AK   F+ L  T     N D
Sbjct: 179 VSSHAIHQKRISGLKFEGGIFTNLTQDHLDYHKTMGEYLKAKKAFFDQLPDTAFALTNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     ADF+ R  ++  + + +E+  +    E+    +
Sbjct: 239 DKNGLVMLQNTKA----KTSTYSVHSLADFKARIIEKHFDGTAIEINGK----ELQVQFV 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    + A+  LS   P  GR +  R +            Y  
Sbjct: 291 GVFNVYNLLAVYGATMLLGQSSEEALLVLSTLKPVSGRFETIRSSQGFTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +  + ++   G GR I V+G     G         +    ++     V L+ 
Sbjct: 347 TPDALTNVLEAIHEV-LEGNGRVITVVG----CGGNRDKTKRPIMAREAVRLSDQVILTS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + D L              +       +    GDV+++  K 
Sbjct: 402 DNPRYEEPQAIINDMADGLNSEQLKKALLIVEREQAIKTACALAKAGDVILIAGKG 457


>gi|307249212|ref|ZP_07531209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858736|gb|EFM90795.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
          Length = 500

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 152/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +  V++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAVIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|83858919|ref|ZP_00952441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853742|gb|EAP91594.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicaulis alexandrii HTCC2633]
          Length = 485

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 95/467 (20%), Positives = 156/467 (33%), Gaps = 37/467 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DLL        G      V G+++DSR + P + F A+ G   DG  FI  A++KGA
Sbjct: 4   TLADLLPETLSAPQGADG-VEVTGLALDSRKVRPGDLFAALPGVKVDGAQFIPMAIEKGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++    + A      +PV   +D   AL+ +A     R  ATI AITG+ GK++T E 
Sbjct: 63  VCILAPKGVTAP-----VPVIEAEDPAEALSAIAANFYPRQPATIAAITGTNGKSSTVEF 117

Query: 126 LTIALSSIKKT-------YACIGSYNNHIGVPLTLARMPVDVDFGIFE-------LGMSH 171
           L    +                 S    +G     A         + E       +  S 
Sbjct: 118 LRQIWAKAGIEAAALGTLGVTRASGRTDVGYTTPDAIALHKSLDLLTEEGVTHLAMEASS 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            G  +     VR  +   T +   HL      E+  S+K  +F  L   G   +   DS 
Sbjct: 178 HGLKQRRMDGVRLSLVGFTNLTQDHLDYHPDFEDYFSSKMRLFSALAPMGAPAVINMDSD 237

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +    A++      +    G  +  D  + +         +    +G+  EV    IG  
Sbjct: 238 WSQRVAQAAQSAGLSPVEIG-WRGRDLTVHEITPHPASQMVRFSWKGEEREVDLPLIGEF 296

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L    +        D A +A+       GR +      +     L    Y   P 
Sbjct: 297 QAANALGAAAMAIASGVSPDAAFEAMGQLTGVAGRLQTVGTTKDGAPVLLD---YAHTPD 353

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
            +   +       PH +GR I V G     G+   +    + E+ +  +   +       
Sbjct: 354 GLDKLLRAA---RPHTQGRIILVFGA---GGDRDPTKRAPMGEIAARLSDVAIVTDDNPR 407

Query: 409 -FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++  +  +          +         L  GDV++V  K 
Sbjct: 408 SEDPAGIRKTILAACPGAQEIGDREAAIRAGIEMLKAGDVLLVAGKG 454


>gi|53729124|ref|ZP_00134088.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207501|ref|YP_001052726.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus pleuropneumoniae L20]
 gi|190149282|ref|YP_001967807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|166224770|sp|A3MY85|MURE_ACTP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|126096293|gb|ABN73121.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189914413|gb|ACE60665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 500

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|303251835|ref|ZP_07338006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249136|ref|ZP_07531143.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|302649265|gb|EFL79450.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854424|gb|EFM86620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
          Length = 501

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/462 (17%), Positives = 150/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR ++  + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVSEGDLFVALKGHQVDGRQFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT  ++L          
Sbjct: 85  DRTACKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTCAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L     +    D+   E L    +
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELNTKAQVLNADDEVGREWLAKLPN 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        ++       +   +  +    +  +    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSDHKF-VKVTDVSFSLQGVKITFESSWGNGALNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 ASLLVLGHDLQRLIETAPLLQGVAGRMEYVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEKLADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +     +   V      +           + DV+++  K 
Sbjct: 435 ADILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|328957123|ref|YP_004374509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328673447|gb|AEB29493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 492

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 166/481 (34%), Gaps = 50/481 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  +    +L++ ++     I       +  ++ D+R + P   F  I G  ++GH+   
Sbjct: 1   MKAI----ELIKPLKSKKFSIDFSDSLEITKVTQDTREVEPGSLFVCIIGSLHNGHELAK 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGS 116
            AVQKGA LVV +  +      + +PV  V++ + A+  LA A          +I +TG+
Sbjct: 57  EAVQKGAVLVVASEPL-----DVEVPVVYVNNTMKAMAILAAAFYDYPSQNLRVIGVTGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDF 162
            GKTT   +L       K+    IG+    IG  +                 R   +   
Sbjct: 112 NGKTTVTHLLDYIFHDHKEKTGVIGTMYRRIGAEVYETKNTTPDSLTLQKTLREMQENGV 171

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKT 220
               + +S    ++         IA+ T ++  HL     +E+ A AK+      G    
Sbjct: 172 QTCSMEVSSHSLVQGRVWGTDFDIAIFTNLSQDHLEYHHTMEKYAEAKSLLFSQLGNGYQ 231

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                    +F + +          +++S+G  ++ADF+    +  ++ +   +  + + 
Sbjct: 232 QDKPKFAILNFDDPVGRSFEEKTAASVFSYGIDQSADFKATDLRITNKGTRFNLNFEDQV 291

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            EV    +G     N L  +        ++ + I++LS      GR +  +   +     
Sbjct: 292 YEVQLQLVGKFNVSNALAAIAGAYAAGLELPSVIQSLSQISGVRGRFEIVKGEYDFAVIV 351

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               + +         ++VL+ ++    G    V+G     G         +   ++  N
Sbjct: 352 DYAHTPDG-------LLNVLNAVNEIKTGNVFCVVG----CGGDRDRTKRPIMAEIAQKN 400

Query: 401 ISHVWLSGFHVL-----ALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
              V  +  +       A+ +   A                           D+V++  K
Sbjct: 401 SDTVIFTSDNPRTEDPNAILNEVVAGLEEESYQLIPDRREAIQSAIKQAAPNDIVLIAGK 460

Query: 451 S 451
            
Sbjct: 461 G 461


>gi|302389511|ref|YP_003825332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200139|gb|ADL07709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 485

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 160/476 (33%), Gaps = 56/476 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    +++       +    +  ++ I+ DSR +     F AIKG   DGHDFI  A+  
Sbjct: 7   LKNLSEIVD------VKGSTEVEISSIAYDSRKVKKGGLFVAIKGFKLDGHDFIGQAINN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +V+   ++        +    V +   AL++ +     +   +  +I +TG+ GKTT
Sbjct: 61  GAVVVIGEKEI---NLPEDVLYIKVKNSRKALSEASSLFFGKPAERLNVIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFE 166
           T  ++   L     +   +G+    I                +    + M  +    +  
Sbjct: 118 TTYLIKAILDEAGYSTGVVGTIGIRIKERLLPAERTTPESLELNEIFSEMVKEGVEYVT- 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S           V+  + V T +   HL      E+  ++K ++         +   
Sbjct: 177 MEVSSHSLKLHRVDHVKFEVGVFTNLTQDHLDFHVSFEDYYASKKKL-------FDLSRK 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +  +     + ++   KNAD +       S+    EV   G+  ++ + 
Sbjct: 230 AVINVDDESGERLCSELNIPVITYAIEKNADVRAENVVIGSDGVSYEVCAGGERRKITYK 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +     L  D++T  KAL       GR   +        FT+I +  
Sbjct: 290 VPGRFSVYNSLAAISACLSLGIDLETMAKALEKVRGVPGR---FEPVDEGQDFTVIVDYA 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL+ +     GR I V G     G         L   +      +  +
Sbjct: 347 HTPDG----LENVLNTVKTFARGRIITVFGA----GGDRDRGKRPLMGKVVSERSDYFII 398

Query: 407 SG-----FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D + + +    +                  + GDVV++  K 
Sbjct: 399 TSDNPRTEDPQAIIDDIEKGVTERSNYEKIIDRREAIRRAIEMALPGDVVLIAGKG 454


>gi|320334257|ref|YP_004170968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
 gi|319755546|gb|ADV67303.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Deinococcus
           maricopensis DSM 21211]
          Length = 424

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/448 (22%), Positives = 153/448 (34%), Gaps = 64/448 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR   P  AF A+ G    G+ F+  A+  GA  V+ + D              V 
Sbjct: 23  LTWDSREAGPNVAFVALPGERMHGNAFVEAALAAGAPFVLTDLDAP--------RAVRVP 74

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D   AL   A A R  +   ++ ITGSVGKTT K     AL +          +N    +
Sbjct: 75  DAQVALFAWARAERAHNPL-VVGITGSVGKTTAKAYAAAALDAHFM-----PVFNTMPAI 128

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              L          + E+G+  LGE+R L  LVRP + V+T+I  AHL  F  +E IA  
Sbjct: 129 ACFLIEFGRSARPLVVEMGIDRLGEMRELVDLVRPDVGVVTSIGEAHLEAFGTVETIARE 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I E       +  +                              D         +  
Sbjct: 189 KGVILEAPRGLVGVQASPFYP------------------------GRDTYGFGEATFAGD 224

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +          +         H ++       +   L       +   +           
Sbjct: 225 ALQVSAEAAAFVYGEVPVALPHASKVQAEAAVLGLALAEVAGVPV-GTAAERLAGVSVPG 283

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  +  G FT+ID++YNA+P S+               GR ++VLG M E+G+  +  H
Sbjct: 284 GRYRVLPGRFTVIDDAYNASPLSV----RAALDALAALPGRHVSVLGRMLELGDTERELH 339

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +            +  G     L          H   T+  L   + + + DGDVV+V
Sbjct: 340 AQVGAYARQR-ADVTFGVGAFASEL------GERAH--ATVPDLLADLLAEVRDGDVVLV 390

Query: 450 KSSNSC------------GFYRLINLLL 465
           K+S               G   +++ LL
Sbjct: 391 KASRGISWAPQRRAQEGVGLDTVVDALL 418


>gi|295086280|emb|CBK67803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Bacteroides xylanisolvens XB1A]
          Length = 482

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPLPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K+     N DD 
Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++      DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|228933885|ref|ZP_04096729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228825761|gb|EEM71550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 492

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 155/485 (31%), Gaps = 58/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I   + F  + G   DG     H F+  
Sbjct: 1   MKLKELASLLLIKDTVGDMNVEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIVVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161
           GKTTT  +L   LS                      +  N    P     + +    + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219
           + + E+    L   R      +  IAV T +   HL       E    K       G + 
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTKDHLDYHGTFHEYKHVKGLLFSRLGNDL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           + T       +  +        +    + ++G    AD Q +      +     V     
Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      +    
Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A         +VLS IS    G+ I V G     G    +    +   ++  
Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSTGKVITVFG----CGGDRDTKKRSIMGGIAGS 400

Query: 400 NISHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               V+++  +         +  ++       +++       +       +     D+V+
Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAITHAINMASSNDIVL 460

Query: 449 V--KS 451
           +  K 
Sbjct: 461 IAGKG 465


>gi|29348861|ref|NP_812364.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|46577030|sp|Q8A254|MURE_BACTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29340767|gb|AAO78558.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 163/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKGA 
Sbjct: 3   LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++        +    I    V D   A+ K+A         +  ++ +TG+ GKTT   
Sbjct: 63  AILCEDIPEEPVA--GITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQEIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|332531944|ref|ZP_08407828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038571|gb|EGI75014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 492

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/478 (15%), Positives = 145/478 (30%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L+ I+       P   V  + +DSR + P + F AIKG   DG  FI  A++ 
Sbjct: 1   MRDLKDILKYIEI----DAPSQLVKHLRLDSREVTPGDVFVAIKGHTLDGGQFIAKAIEN 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  ++ +            P++ V ++   L +LA     +      +I +TG+ GK+T
Sbjct: 57  GAIAIIADRLCEFESSFE--PLYLVSELDKKLPELASRFYSQPSQTLDLIGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T  M+     +   +           G P  L  +       +                 
Sbjct: 115 TTAMIAHL--AQFCSTESAIIGTLGYGHPDNLIPLINTTPSTVDLQHILSDLNSQHKKLV 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++      +   AV T ++  HL     +     AK  +F   E    +  
Sbjct: 173 AMEVSSHGLVQQRVAKCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFEPQVVVLN 232

Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D    + L+       I     +              +  SE    ++      + + 
Sbjct: 233 QDDFQAEQWLEKYDFNNLICYGRKNLAPKNARYVYFSDVEYSSEGISAQLSTSWGDISIK 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+   L  +  L   ++  +   +   P  GR + +  A           
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLVAGCAQLQPVAGRMQAFSQAGMPTCVVDYAH 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L  +  H  G    V G     G         L    +  N + +
Sbjct: 353 TPDALAL-------ALQALQLHVPGGVSCVFG----CGGDRDKGKRALMAQAAEQNANKI 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L    + H          F   +    DV+++  K 
Sbjct: 402 IITSDNPRSENPDDIIADVAGGLTHPQNAHLEADRATAIRFAIENATADDVILIAGKG 459


>gi|303250492|ref|ZP_07336689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251534|ref|ZP_07533441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|302650480|gb|EFL80639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860998|gb|EFM93004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
          Length = 500

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 152/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L    +
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPN 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELDSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|167629674|ref|YP_001680173.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592414|gb|ABZ84162.1| udp-n-acetylmuramoylalanyl-d-glutamyl-2,
           6-diaminopimelate--d-alanyl-d-alanyl ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 599

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 101/469 (21%), Positives = 183/469 (39%), Gaps = 14/469 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPHYDGHDFILHAVQ 62
           W    +     G  +   P+  +  +    R +     +    +     D   +   A +
Sbjct: 6   WNVRAVAAITGGQLLSGRPEDPLRYVCE--RLVDCGKGDVLIPLV-NLTDPAGYAARAAR 62

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KG G++V+     ++  + ++ V GV  V  A  +L  A R R KA I+A+TGS GKTTT
Sbjct: 63  KGVGVLVLPDRTASAAANAAVAVIGVGSVRDAYFRLVKAYRHRCKARIVAVTGSAGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           KEM+   L+   +      +YN   G+  TL R+     FG+ ++G      I F   LV
Sbjct: 123 KEMIAAVLAEAGEVQKNWRNYNGPYGIGYTLFRLRPHHTFGVVKIGAYIPNSIDFGARLV 182

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + VIT I   H +   G E +   K ++   L K G + LN DD     +       
Sbjct: 183 APEVGVITCIGLGHAAALGGGEGVRREKEKLLTHLPKKGLLVLNGDDPGCRSVDLSRCQA 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++ +    + ++      + +   + +   +    + +EV   G        ++  L  
Sbjct: 243 PVRWVGVECEREDLSLWAERIQVHRDGTRFLLCGLEREIEVELPGF--FGRPAVIDALLA 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++            S     E   +R+      G   LID +YNANP SM A++   ++
Sbjct: 301 AAVGDHMGLPPESIASGLTKVEYTPRRFSPIRLPGRRLLIDATYNANPHSMSASLESAAK 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           ++  G+G  +A+LG M  +GE +   H  +    +      +   G     +      + 
Sbjct: 361 LAVEGKG--LALLGTMSNLGEEAPEQHRAIGRRAAELGF-ALIALGEQAETMASGATEAG 417

Query: 423 HVHYSETMD----GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 +       +       L +  V++VK+SNS     +   + +E
Sbjct: 418 GRVIYASKQWEKGHVVALALKELPEEGVLLVKASNSVELEIVAEAIEKE 466


>gi|298480584|ref|ZP_06998781.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
 gi|298273405|gb|EFI14969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. D22]
          Length = 482

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LKELLKAIQPVEVAGDSDIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYIQVKDSEDAVGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K+     N DD 
Sbjct: 181 SHSIAQKRISGLKYAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKSAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++      DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLCDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|260426426|ref|ZP_05780405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
 gi|260420918|gb|EEX14169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Citreicella sp. SE45]
          Length = 493

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 164/474 (34%), Gaps = 38/474 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T  +L     G +     +  ++GIS+DSR++ P   F A+ G    G  F+  A
Sbjct: 1   MSGEKTLSEL-----GLTARGGREARISGISVDSRAVMPGHLFAAMPGTKVHGARFVDAA 55

Query: 61  VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA  V+ + +       ++    + +    D   AL            AT+IA+TG+
Sbjct: 56  LSQGAAAVLTDAEGAQIAAETLAGSEVALVIAADPRQALAFACALFFGAQPATMIAVTGT 115

Query: 117 VGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            GKT+    +      +                     +    P+TL +   +      E
Sbjct: 116 NGKTSVATFVRRLWQEMGFRAVNLGTTGIEGDWQAPLRHTTPDPITLHKALAEAALAGVE 175

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S  G  +     V+   A  T  +  HL   +  EE  +AKA +F  +      
Sbjct: 176 HAAMEASSHGLDQRRLDGVQLRAAGFTNFSQDHLDYHADFEEYFAAKAGLFARVLPEEGT 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D    +          +   + G S+ AD +L   +  +    + +   G   ++
Sbjct: 236 AVVNIDDARGIDMLAIAKARGQETLTVGDSQGADLRLLGQRFDATGQELRLSWHGVVEQL 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + IG    QN L+  G+V    A+ +   +AL       GR  +     + G    +D
Sbjct: 296 RLNLIGGFQGQNALLAAGLVIACGAEAEDVFRALPKLDTVRGR-MQLAATRDSGAAVYVD 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +  S       +  + PH  GR +A++G     G    +    L    +  +   
Sbjct: 355 FAHTPDAVST-----AIKALRPHVMGRLVAIIGA----GGDRDAGKRPLMGAAAAEHADV 405

Query: 404 VWLSG-----FHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           V ++          A++   L  +             L     L  GD ++V  
Sbjct: 406 VIVTDDNPRSEDPAAIRLQVLGGAPEAIEVGDRAEAILRGVDMLQPGDALLVCG 459


>gi|224024609|ref|ZP_03642975.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
 gi|224017831|gb|EEF75843.1| hypothetical protein BACCOPRO_01336 [Bacteroides coprophilus DSM
           18228]
          Length = 488

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 97/476 (20%), Positives = 158/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++LQAI    +       ++GI +DSR I   + F A+KG   DGH +I  A++KG
Sbjct: 1   MKLGNILQAITTGMVKGNLDKEISGIQMDSRQIKEGDLFVAVKGTQTDGHAYIGKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV  T  +    S ++    V+D   A+ +LA        SK  +I +TG+ GKTT 
Sbjct: 61  ATAVVCET--LPETLSETVTYIQVNDSEDAVGRLATTFYGDPTSKLDLIGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL      E    AK   F+GL KT     N D
Sbjct: 179 VSSHAVAQKRIGGLKFAGGIFTNLTRDHLDYHKTFENYLKAKKAFFDGLLKTAFALTNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     ADF+ +  +   E     + L   + EV    I
Sbjct: 239 DRNGLVMTQNTKAKVA----TYSLRSLADFKGKVLEDGFEG----MLLDINNREVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L       +L    +  +  LS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYSAACLLGKQPEDVLLLLSTLRPVSGRFDSLRSTKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               +     VL     +G G+ I V+G     G         +    ++     V ++ 
Sbjct: 351 LTNVLNTIHEVL-----NGRGKVITVVGA----GGNRDKGKRPIMAQEAVRLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L  +    V                   GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLKSNDMNKVLSITDRKEAIRTACMLAQAGDVILVAGKG 457


>gi|145297480|ref|YP_001140321.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142850252|gb|ABO88573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelateligase
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 494

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 151/460 (32%), Gaps = 42/460 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  +V   D       
Sbjct: 16  NAPALSLTDIQLDSRRVGPGCLFIAIRGHQMDGRRFIEQAVAQGATAIVFEEDGEFVAPP 75

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           L+IP  G+ D+   L++LA     +   K  ++ ITG+ GK+TT  ++    + +     
Sbjct: 76  LTIPCIGIRDLPARLSELAGYFYEQPANKLDLVGITGTNGKSTTALLVANWRTLLGGKAG 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLV 182
            +G+  N  G+   L          +                  + +S  G ++     +
Sbjct: 136 VMGTIGN--GLFGELVEAENTTGSAVQVQANLASLQQQGAALVAMEVSSHGLVQHRVAAL 193

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               AV T ++  HL     +E   +AK E+ + +++   +    D    + L A   A+
Sbjct: 194 PFAAAVFTNLSRDHLDYHGTMEAYGAAKEELLKLVDEPCAVINADDQLGRQWLAAYPGAV 253

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                             +      +    ++     +  +    +G     N+L  +G 
Sbjct: 254 AFSVNGPIADHPGRQLTAQDPHFHQQGFRTQINSSWGNGVLSAPLLGRFNVSNVLAAMGA 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           + +L  D +  +       P  GR + +              + +A           L  
Sbjct: 314 MLVLGYDFNVLLATAPQLQPVTGRMECFGGGNAPLAVVDYAHTPDA-------LEKALQA 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413
           +  H EG+   ++G     G         +   ++  +   V L+  +         +  
Sbjct: 367 LRVHCEGQLWCLVG----CGGDRDRGKRPMMAAMAEQHADRVILTDDNPRTEEPAQIMAD 422

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L     V                    D+++V  K 
Sbjct: 423 MVAGLRDPAAVQVEHDRVKAIALALGQASKQDIILVAGKG 462


>gi|325299147|ref|YP_004259064.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
 gi|324318700|gb|ADY36591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Bacteroides salanitronis DSM 18170]
          Length = 484

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 98/476 (20%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++++A+  + +       + GI IDSR + P   F AIKG   DGH +I  A++ G
Sbjct: 1   MKLEEIIKAVTVNELIGSADRDITGIQIDSRLVGPGHLFVAIKGTQTDGHAYIQKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  +V     +       +    + D  GA+ KLA A      SK  +I +TG+ GKTT 
Sbjct: 61  ACGIVCEQ--LPEEIRPEVTYIRLADTEGAVGKLATAFYGDPTSKLDLIGVTGTNGKTTI 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELG 168
             +L                            ++    P+TL R+     D       + 
Sbjct: 119 ATLLYKMFRQFGYKVGLLSTVCNYIDDEAIPADHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +R    + T I   HL      E    AK   F+ L K+     N D
Sbjct: 179 VSSHAIAQRRIAGLRFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKSAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   +++   + A     I ++      DF+ +  +   +     + L   + EV    I
Sbjct: 239 DKNGKVMVQNTKA----RIAAYSLRTLCDFKGKVLEDGFDG----MLLDINNREVNVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGAACLLGKPSEEVLIALSTLCPVAGRFDALRSRRGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL      G+GR I V+G     G         L    ++     V ++ 
Sbjct: 351 LVNVLNAIHEVL-----RGQGRVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DVV++  K 
Sbjct: 402 DNPRFEDPQDIINDMLAGLDKDDMKKVLSIVDRKEAIRTACMLAQPQDVVLIAGKG 457


>gi|319953736|ref|YP_004165003.1| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
 gi|319422396|gb|ADV49505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Cellulophaga algicola DSM
           14237]
          Length = 487

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/473 (16%), Positives = 159/473 (33%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       VN I  DSR +   + F AIKG   DGH++I  A+  GA 
Sbjct: 4   LKDILFGVSITAVSGSTSVMVNSICFDSRIVTMGDVFVAIKGTITDGHEYIEKAIALGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++  T  +       +    VD+   AL  +A            ++ +TG+ GKTT   
Sbjct: 64  TIICET--MPVTIVDDVTYVEVDNGNKALAIMASNFYDNPSKNLKLVGVTGTNGKTTISS 121

Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L                         Y      P         ++  DV      + +S
Sbjct: 122 LLYQLFKKAGFKVGLISTIKIMVDDTEYKTSHTTPDALTINHHLKLMNDVGVEFCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +    A+ T ++  HL       E    K  +F+ L K   +  N DD 
Sbjct: 182 SHGIHQKRTEGLAFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDNLPKKAFVLTNVDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A      Y++     AD++ +  +       +++       +++     Y
Sbjct: 242 NGLVMLQNTKARK----YTYALKTYADYKAQILENQFNGQLLKIDGSEVWSKLIGDFNAY 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +M         +           ++ L +    E    R++  +++   T I + Y   P
Sbjct: 298 NMLAIYGTAQLLGLE-------KLEILRLLSELENVDGRFQYFISKERITAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++++    E     V       G+  +S    +  + S  + + ++ S   
Sbjct: 350 DALKNVLDTINKLRTGNENVITVV----GCGGDRDRSKRPVMGHIASEMSTTTIFTSDNP 405

Query: 409 --FHVLALKDALPRSIHVHYS------ETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +   +   + V         E+ +             D++++  K 
Sbjct: 406 RTENPDEILKEIEAGVEVQNVRKTLTIESREQAIKTACQLANSNDIILIAGKG 458


>gi|148828293|ref|YP_001293046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
 gi|166224778|sp|A5UIQ7|MURE_HAEIG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148719535|gb|ABR00663.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittGG]
          Length = 488

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFRQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQIAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|260591740|ref|ZP_05857198.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
 gi|260536024|gb|EEX18641.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella veroralis F0319]
          Length = 485

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 162/476 (34%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I    +  + G++IDSR IA    F A+KG   DGH FI  A+++G
Sbjct: 1   MKLSELLKNITPIAIHGNAEVEITGVNIDSRKIANGHLFIAMKGTQVDGHQFIGKAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V++    + +  + ++    V+       K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAVLLED--MPNTLNDNVTYVQVESTENTAGKVATLFYGDPSHKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168
             +L                            ++    P+ L ++  D+     E   + 
Sbjct: 119 ATLLYNMFREFGYKVGLLSTVCNYIDDKAIPADHTTPDPIELNQLLADMVAAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +    A+ T +   HL      E   +AK   F+GL K      N D
Sbjct: 179 CSSHAIHQHRIGGLDFTGAIFTNLTRDHLDYHKTFENYRNAKKMFFDGLSKHAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    TI ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMIMVQNTKA----TIKTYSTKRMADFRAKILECHFEG----MYLEIDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    D  + ALS      GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGAAKMLGKSTDEILLALSTLKSVNGRLEPIQSPEGFTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ +  +  +  G  I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALENVLTAIHDVLDNKGGHIITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 402

Query: 409 FHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L  +                        GDV++V  K 
Sbjct: 403 DNPRDEDPQAIINDMMAGLDATQRKKVLNIVDRKEAIRTAAMMAKRGDVILVAGKG 458


>gi|307260464|ref|ZP_07542159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306869867|gb|EFN01649.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 500

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 51/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVGEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L     
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLPD 262

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+ + T  SF        +        +   +  +    + E+    IG     N+L  L
Sbjct: 263 AVAVSTDASFSSEHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             + +L  D+   I+   +     GR +      N     L+   Y   P ++      L
Sbjct: 322 AGLLVLGHDLPKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKAL 378

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------V 411
                H EG    + G     G    +    +   ++      V  +  +         +
Sbjct: 379 QAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNAKIM 434

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +   +   V      +           + DV+++  K 
Sbjct: 435 ADILNGFVQVEKVQVIHDREQAIKTAIEQTNEKDVILIAGKG 476


>gi|322513878|ref|ZP_08066957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
 gi|322120277|gb|EFX92224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus ureae ATCC 25976]
          Length = 501

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 155/463 (33%), Gaps = 51/463 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------ 83
           I++DSR +   + F A+KG   DG  FI  A+++GAGLV+   D   +   L        
Sbjct: 24  ITLDSRQVGEGDLFVALKGHQVDGRQFIQKAIEQGAGLVLAEADEGQTEIELDAKFAKYN 83

Query: 84  ------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L         
Sbjct: 84  LDRTSCKVVSVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLL 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179
                       G+   +          I                  + +S  G  ++  
Sbjct: 142 GGKSAVMGTIGNGLYGKIQEAANTTGSAIEVQRNLASFVEMGADFCAMEVSSHGLAQYRA 201

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   +AV T ++  HL     +EE A AK  +F  L+    +    D+   E L    
Sbjct: 202 EALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFRLFSELDTKAQVLNADDEVGREWLAKLP 261

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +A+ + T  SF        +        +   +  +    + E+    IG     N+L T
Sbjct: 262 NAVAVSTDASFSSDHKF-VKATDVSFSLQGVKIAFESSWGNGELNSRLIGAFNVNNLLTT 320

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +L  D+   I+   +     GR +      N     L+   Y   P ++      
Sbjct: 321 LASLLVLGHDLQKLIETAPLLQGVAGRMECVVSQKNPQNRPLVLVDYAHTPDAL---EKA 377

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           L     H EG    + G     G    +    +   ++      V  +  +         
Sbjct: 378 LQAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNTKI 433

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +     +   V      +           + DV+++  K 
Sbjct: 434 MANILKGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 476


>gi|224536610|ref|ZP_03677149.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521701|gb|EEF90806.1| hypothetical protein BACCELL_01485 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 483

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+AIQ   I    +  + G++IDSR +     F A++G   DGH +I  A++KGA 
Sbjct: 3   LSELLKAIQPIQIIGNTETEITGVNIDSRLVQAGHLFMAMRGTQTDGHVYIPVAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
            V+     V       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AVLCED--VPEAKQEGITYIQVKDSEDAVGKVATTFYDDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L              + + +Y +   +P                   D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNLLLGQMADSGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +R    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 181 SHSIDQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ +  +   E     + L   + E+  H IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGKILESHFEG----MLLDFNNHELAVHFIGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS   P  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSALQPVAGRFDAVRSPKGITAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDKEDMQKTISIADRREAIKTACLLAQPGDVILVAGKG 457


>gi|325168919|ref|YP_004280709.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
 gi|325064642|gb|ADY68331.1| Mur ligase middle domain protein [Agrobacterium sp. H13-3]
          Length = 1056

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 116/468 (24%), Positives = 197/468 (42%), Gaps = 22/468 (4%)

Query: 5    WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFIL 58
            W    +  A  G  +   P      G+   + ++ P +    ++G + D      +  I 
Sbjct: 597  WNAAHIAAATGGTWVRQPPHGWTAKGLCTYAPAMQPADM-VVLRG-NEDATGVPVNALIN 654

Query: 59   HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             A   G    +     +AS      PV  V D + A+  +   AR R   +++A+TGS G
Sbjct: 655  RAKPAG---FMTTEPDLAS--GQQGPVLKVADNMQAVLAMGDYARSRMTGSVLAVTGSAG 709

Query: 119  KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            KTT   ML  ALS+         + N   GV   LA +P +    + EL +   G++   
Sbjct: 710  KTTVVAMLAHALSAWGNVAKSNHNANLPAGVAWNLASIPWETPHVVLELAI---GKMAIS 766

Query: 179  THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + RP +A+ T + PAHL   S + +IA  K+ IF G+E   T  LN D   ++ +   
Sbjct: 767  ARMARPKVAIFTNVLPAHLGEKSTVTDIARTKSAIFLGMEPGDTAVLNRDMLEWDTVHDA 826

Query: 239  SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            +    ++ +      +     LR               +   +              +L 
Sbjct: 827  ASRRKLEIVTYGTSEECMCQLLRYDAASRHAHARIRNREVSFLIGAAGSHMALNGLAVLA 886

Query: 299  TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             + ++          +++ +       RG+     L+    T+ID++YNANP SM    +
Sbjct: 887  AISVLGHPLEPAIAQLESFAALPG---RGEEIHLLLDGRRLTVIDDAYNANPGSM---RA 940

Query: 359  VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
             L+++  H  GRRIAVLG+M E+G    ++H +LA  +   +I  V+++G        AL
Sbjct: 941  ALARLGDHIGGRRIAVLGEMAELGPGRAAYHTELAAFIQDRSIDEVYVTGDLYSDFWKAL 1000

Query: 419  PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              S    Y+E+   L   ++  LVDGD V+ K S+S G + L+  L  
Sbjct: 1001 SPSSRGLYAESRQALKEILRERLVDGDTVLFKGSHSTGMHELVEWLKN 1048


>gi|154494020|ref|ZP_02033340.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
 gi|154086280|gb|EDN85325.1| hypothetical protein PARMER_03365 [Parabacteroides merdae ATCC
           43184]
          Length = 490

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 51/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+  ++   +       ++GI  DSR +     F A++G   DGHD+I  A+ KGA 
Sbjct: 3   LKELIHPLEVLEVVGNTDVEISGIQSDSRKVEKGFLFVAVRGTTVDGHDYIQSAIGKGAA 62

Query: 67  LVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            +V       S   + +         V D   AL K   A          ++ +TG+ GK
Sbjct: 63  AIVCEEIPALSDEDIQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE-- 166
           TT   +L      +      + +  N+I             P+TL  +   +     E  
Sbjct: 123 TTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVEAGCEYA 182

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +     +  +  + T +   HL     +E    AK + F+ L  +     
Sbjct: 183 FMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPTSAFALT 242

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A  +    ++     ADF+ +  +   E + M V  +      V 
Sbjct: 243 NADDKAGLVMLQNTAARKL----TYSLRTLADFKGKILESHFEGTEMLVNGREVMTRFVG 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               Y++       + +      +V   +  L     +    +  +       +    ++
Sbjct: 299 RFNAYNLLAVYGAAVSLGK-DPEEVLVVLSDLHSVSGRFQTIQSPKGYTAIVDYAHTPDA 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 S+   +        +G GR I V+G     G         +    +      + 
Sbjct: 358 LTNVLNSIHEVL--------NGNGRVITVVG----CGGNRDKGKRPIMAKEAAKLSDQLI 405

Query: 406 LS---------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+            +  +   L  +   H                    GDV++V  K 
Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMEHTLCITDRAQAIKTATMLARKGDVILVAGKG 464


>gi|154245793|ref|YP_001416751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159878|gb|ABS67094.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 136/473 (28%), Gaps = 37/473 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L +   LL               V G+S DSR I P + F AI G H DG  FI  A
Sbjct: 8   MTSL-SLGQLLDGHARILSAGAGDEPVFGLSADSRRINPGDLFVAIPGTHADGSRFIADA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V++       +    + +    DV  +L+  A     R  ATI A+TG+ GKT
Sbjct: 67  VARGASAVLMEPAAPRPVLPPHVALAFSLDVRHSLSLAAARFYPRQPATIAAVTGTAGKT 126

Query: 121 TTKEMLTIALSSIKKTYACIGSYN------------NHIGVPLTLARMPVDVDFGIFEL- 167
           +    L      +    A +G+                       A +      G+  + 
Sbjct: 127 SVAFFLRQIWERLGHKAAYLGTIGLVAPDGSTYGSLTTPDPVELHATLDRLAGEGVTHMA 186

Query: 168 -GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S  G  +     V       T +   HL     I+    AK  +F  +       + 
Sbjct: 187 LEASSHGLDQKRLDGVHFTAGGFTNLGRDHLDYHPTIDAYFRAKLRLFTQVMPDDATAVA 246

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              + F              +   G+ +     +           +       ++  +  
Sbjct: 247 VTGAPFAANALAWAETRGLKLLPIGEGQATGLDIFGTTGSGTGQKVMFADGSHAIVPLVG 306

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                 A                   A++AL+      GR    R   +      +D ++
Sbjct: 307 RFQLDNALLAAGLAIACGAER---PAALEALAYLTGVPGR--LERIGDDPRRPVFVDYAH 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                +      VL  +     GR + V G     G         L   ++      V +
Sbjct: 362 KPEALAT-----VLDTLRAAVPGRLMVVFG----CGGDRDKGKRPLMGAIAASKADVVIV 412

Query: 407 SG-----FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A++  +    H                + L  GD ++V  K 
Sbjct: 413 TDDNPRSEDPAAIRAEILEGAHGAREIGDRAEAIKAAVALLQPGDALIVAGKG 465


>gi|29653481|ref|NP_819173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|153207139|ref|ZP_01945918.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154706527|ref|YP_001425293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161830895|ref|YP_001596092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165918371|ref|ZP_02218457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212213347|ref|YP_002304283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212219395|ref|YP_002306182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
 gi|46577002|sp|Q83F28|MURE_COXBU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29540743|gb|AAO89687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii RSA 493]
 gi|120576800|gb|EAX33424.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii 'MSU Goat Q177']
 gi|154355813|gb|ABS77275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii Dugway 5J108-111]
 gi|161762762|gb|ABX78404.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 331]
 gi|165917877|gb|EDR36481.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Coxiella burnetii RSA 334]
 gi|212011757|gb|ACJ19138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuG_Q212]
 gi|212013657|gb|ACJ21037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Coxiella burnetii CbuK_Q154]
          Length = 489

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 145/474 (30%), Gaps = 43/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL A             +  +  DSR I P + F A  G   DG D+I  A+ K A 
Sbjct: 6   LSQLLDAKNKALT---ADVLIKALQTDSRKIQPGDLFIAYPGLQVDGRDYIKEALDKKAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
            V    +         +P+   +++   + ++A         +  II ITG+ GKT+  +
Sbjct: 63  AVFYEANQYNPSIQTKVPLIPFENLQHRIGEIAARFYDDPSCEMEIIGITGTNGKTSCAQ 122

Query: 125 MLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVDVDFG---IFELGMS 170
            +  AL S       I              ++    P+ L +   ++         + +S
Sbjct: 123 FIAQALQSQGIRCGVIGTLGYGFLGSLHKTSHTTPEPIQLQQAFAEMRKQGAKAIAMEVS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     V+  IAV T ++  HL     +E  A AK  +F+       +    D  
Sbjct: 183 SHALHQRRVEGVQFDIAVFTQLSRDHLDYHGDMENYARAKELLFQQPGLHTGVVNCDDAL 242

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI 288
              ++    H L +    + G   +    +         +   +EVQ             
Sbjct: 243 GKRIIAHYRHQLTLVGYSANGVKDDRVSSVIASAIQPLAQGFSVEVQTPWGEGTFTTPLF 302

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L  L ++ +     D A+  LS      GR +                + +A
Sbjct: 303 GRFNISNLLAVLSVLCLCEIPFDKALLELSQLRNVPGRMQVVDSQRQPQIIVDYAHTPDA 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L+ +  H +GR I V G     G             ++  +   + L+ 
Sbjct: 363 -------LEKALTALREHCQGRLICVFG----CGGDRDRGKRPQMAAVAEQHADQIILTN 411

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            ++        V           +        D+V++  K 
Sbjct: 412 DNPRTESPLTIIQDIQAGFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVLIAGKG 465


>gi|319776626|ref|YP_004139114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
 gi|317451217|emb|CBY87450.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:me so-diaminopimelate
           ligase [Haemophilus influenzae F3047]
          Length = 488

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSNNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L   +  +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A  +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDASAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|325102884|ref|YP_004272538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
 gi|324971732|gb|ADY50716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter saltans DSM 12145]
          Length = 486

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 151/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +    +    +  ++ +  DSR ++    F AIKG   DGHDF+    + GA 
Sbjct: 4   LKDILYGVAIEQVVGSTEIEISQLQFDSRKVSEGTLFVAIKGTRSDGHDFVKDVTENGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             +V T  +  + +  +    V +   AL  +A         K  ++ +TG+ GKTT   
Sbjct: 64  AAIVET--LPEVIAEGVTYIKVANSATALGVVASNFYHNPSSKLKLVGVTGTNGKTTVCT 121

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + +Y N + VP T                VD       + +S
Sbjct: 122 LLYKLFKKLGYNVGLVSTVENYINDLVVPATHTTPDQIALNQLLNRMVDAGCEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     +     V T I   HL      +    AK   F+ L        N DD 
Sbjct: 182 SHSVVQHRIDGLEFAGGVFTNITHDHLDFHKTFDNYIKAKKGFFDNLTSKAFALTNVDDR 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       ++  +  ADF+ +  +         + L    MEV    +G 
Sbjct: 242 NGNVMLQNTRAHKK----TYALNAVADFKAKIIENLFSG----LHLDIDGMEVYFRLVGS 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  D    +  LS+    EGR                   Y   P
Sbjct: 294 FNAYNLLAVYGTALLLEQDRTKVLTVLSMLTGAEGRFDYIIAPNKVIGIVD----YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  +S +  IS   E     V       G         +    +      V L+  +
Sbjct: 350 DALRNILSTIENISSGTESIITVV-----GCGGDRDREKRPIMAQTACDWSHKVILTSDN 404

Query: 411 VL------ALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    L D L          V                   GD++++  K 
Sbjct: 405 PRTEKPEDILNDMLAGVSAVNQKKVLTILDRREAIKAACHLAKPGDIILLAGKG 458


>gi|332982164|ref|YP_004463605.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
 gi|332699842|gb|AEE96783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mahella australiensis 50-1 BON]
          Length = 484

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 158/472 (33%), Gaps = 52/472 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL  I+ +++       +  I  DSR + P   F AI+G   DGH FI  A+  GA  VV
Sbjct: 6   LLNDIEYYTVNGDVHLDIKNICYDSRKVTPGSLFVAIEGFKTDGHRFIRQAIDNGAVAVV 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLT 127
           V  D+        + V  V+D   +L  L+ A          +I +TG+ GKT+   M+ 
Sbjct: 66  VTRDVP---LPDGVSVVKVEDSRLSLAALSRAFYDYPDKQLHLIGVTGTNGKTSVTYMVK 122

Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
             L    +    IG+  N IG                  L        +   + E+  S 
Sbjct: 123 SILEQSGRKVGLIGTIQNMIGDVVLHTERTTPESSDLYALFRQMADGGIQDVVMEV--SS 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                      R  I + T +   HL   S +++  +AK ++F+      T   +     
Sbjct: 181 HSLALNRVAGCRFDIGIFTNLTEDHLDFHSNMDDYFAAKLKLFQNSGLIATNVDDSYGVK 240

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + +         KT+Y++G  + A          ++ S  ++ + G    V+ +  G  
Sbjct: 241 LKDM------FVSKTVYTYGIEREAHVTASNILSDAKGSTFDIDICGDRRPVIINIPGRF 294

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        +    D   K L       GR   +        FT+I +  +    
Sbjct: 295 SVYNALAAAAACYAMGVSADDISKGLQALKSVPGR---FEVLGTDTDFTVIIDYAHTPDG 351

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                 ++L  +    +GR IA+ G     G    +    +   +         L+  + 
Sbjct: 352 ----LENILKSVKDIAKGRVIALFG----CGGDRDAAKRPIMGEIGGRYADFCILTSDNP 403

Query: 412 L-----ALKDALPRSIHVHYS-----ETMDGLFLFIQSSLVDGDVVVV--KS 451
                 A+   +   I   +      E       +   +    D++++  K 
Sbjct: 404 RSEDPMAIIRQIEEGIRKTHCPYIVIENRRQAIKYGLQTARKDDILLLAGKG 455


>gi|218903725|ref|YP_002451559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|218539502|gb|ACK91900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
          Length = 493

 Score =  150 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 160/485 (32%), Gaps = 58/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161
           GKTTT  ++   LS        +G+    +G                          + D
Sbjct: 114 GKTTTSYLIEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219
           + + E+    L   R      +  IAV T +   HL      +E    K+      G + 
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNDL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           + T       +  +        +    + ++G    AD Q +      +     V     
Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      +    
Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSTLKSIEGRMEIIDENQDFLVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A         +VLS IS   +G+ I V G     G    +    +   ++  
Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGS 400

Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448
               V+++  +            ++    ++ +++Y  E   +       +     D+V+
Sbjct: 401 YSDFVFITSDNPRSEDPQAITKDIEKGFSQNNNLNYKVEVDRELAINHAINMASSNDIVL 460

Query: 449 V--KS 451
           +  K 
Sbjct: 461 IAGKG 465


>gi|261881134|ref|ZP_06007561.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
 gi|270332139|gb|EFA42925.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella bergensis DSM
           17361]
          Length = 484

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 160/476 (33%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL++I+  +I       + G++IDSR I+   AF A+KG   DGH FI  A++ G
Sbjct: 1   MNLQELLKSIKSLAIIGDTDVDITGVNIDSRKISNGHAFVAMKGTQVDGHQFIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++     +    +  +    V     A+ KLA A       K  ++ +TG+ GKTT 
Sbjct: 61  AKAILCED--MPEDRTDGVTYVQVASTAEAVGKLATAFYGYPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L      +       + + +Y     +P                  VD       + 
Sbjct: 119 ATLLYNMFRKMGHRCGLLSTVCNYIEDEVLPADHTTPDAIELNELLAKMVDAGCEYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +    A+ T +   HL      E   +AK   F+ L K+     N D
Sbjct: 179 CSSHAIAQRRIGGLTFTGALFTNLTRDHLDYHGTFENYRNAKKMFFDDLPKSAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A    TI ++   + ADF+ R  +         + L     +V    I
Sbjct: 239 DKNGMFMVQNTKA----TIKTYSMERMADFRARIIEMHFAG----MYLNVDGNDVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  LS  H   GR +  + +            Y  
Sbjct: 291 GKFNVSNLLAVYGAARMLGKQPEDILVTLSTLHSVSGRLEPIQSSEGVTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ + ++     G+ I V G     G         L    ++     V ++ 
Sbjct: 347 TPDALANVLNAIREV--DKTGQIITVCGA----GGNRDKGKRPLMAQEAVKQSDRVIITS 400

Query: 409 FHVL---------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L   +   V                   GDVV+V  K 
Sbjct: 401 DNPRFEEPQDIIDDMLAGLNTQQMKKVVSIADRREAIKTACMLAKKGDVVLVAGKG 456


>gi|126741290|ref|ZP_01756968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
 gi|126717608|gb|EBA14332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. SK209-2-6]
          Length = 499

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 139/468 (29%), Gaps = 39/468 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L     G +        ++ IS+DSR       F A+ G    G  FI  A+++GA 
Sbjct: 14  LSEL-----GLTARGGADPVIHSISVDSREALEGGLFAALPGSQVHGAKFIPAALERGAT 68

Query: 67  LVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            ++ +          +      V  V+D   AL   A         T++A+TG+ GKT+ 
Sbjct: 69  AILTDAKGAEIAAQPLSESHAAVVIVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSV 128

Query: 123 KEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
              +      +                   +                          +  
Sbjct: 129 ASFVRQIWCELGHQAVNLGTTGVEGAWSYPLAHTTPEPITLHRALARAAAAGVTHAAMEA 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     V+   A  T     HL      E   +AKA +F  +     + +   +
Sbjct: 189 SSHGLDQGRLDGVQLAAAGFTNFTQDHLDYHKTFEAYFAAKAGLFRRVLPEEGVAVINMN 248

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                      A   + + + G+    D  L   +       +      +  +   + IG
Sbjct: 249 DPRGAEMRAIAAARGQEVLTVGR-GLGDLSLSGLRYDGTGQDLRFAWHDRPFQYRLNLIG 307

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+L+  G+      D +     L       GR +      N      +D ++  +
Sbjct: 308 GFQAENVLLACGLAIASGEDPEAVFATLPHLTTVRGRMEHAATRENGA-SVFVDYAHTPD 366

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +       +  + PH  GR +A++G     G    +    L    +  N   V ++  
Sbjct: 367 AVAT-----AIKALRPHVLGRLLAIVGA----GGDRDAGKRPLMGQAAAENADLVIVTDD 417

Query: 409 ----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   A++ A+                 L     L  GD +++  
Sbjct: 418 NPRTEDPAAIRAAVKGGAPEALEVGDRAEAILRGVDLLGPGDSLLICG 465


>gi|282878015|ref|ZP_06286823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
 gi|281299850|gb|EFA92211.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella buccalis ATCC 35310]
          Length = 482

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 149/476 (31%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L++ I+  ++       + G+ IDSR +     F AIKG   DGH +I  A++ G
Sbjct: 1   MTFSELIKGIKTSAVIGEANVNITGVEIDSRKVKEGNLFVAIKGTQVDGHQYIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++            ++    V      + K+A            ++ +TG+ GKTT 
Sbjct: 61  AAAILCEE--APQQPQPNVTYAVVKSTEDEVGKVATRFFGDPSKHLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE---LG 168
             +L      +      + +             +    P+ L  +   +     E   + 
Sbjct: 119 ATLLYNLFRKLGHKCGLLSTVCNFIEGQEIPADHTTPDPIELNELLAKMLAAGCEYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL K+     N D
Sbjct: 179 CSSHAIAQKRIGGLTFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDGLPKSAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     ADF+ R  +   +     + L     EV     
Sbjct: 239 DKNGMVMVQNTKASVK----TYSIQSMADFKARIIECHFQG----MYLAIDGQEVGVQFT 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S  H   GR    +             + +A
Sbjct: 291 GKFNVSNLLAVYGAARMLGKQREETLIAMSTLHTVNGRMDTLQSPEGFTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +L+     G+G  I V G     G         L    ++     V ++ 
Sbjct: 351 LK------NVLLAIHEVDGKGHIITVCGA----GGNRDKGKRPLMAKQAVQLSDKVIITS 400

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L          V                    DV++V  K 
Sbjct: 401 DNPRFEDPQDIINDMLAGLDAQDQKKVLTIADRKEAIRTACMLAQKQDVILVAGKG 456


>gi|42524586|ref|NP_969966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
 gi|39576796|emb|CAE78025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bdellovibrio bacteriovorus HD100]
          Length = 496

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 144/476 (30%), Gaps = 36/476 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   + G          V G+  D+R + P   F AI+G   DGH FI  AV KG
Sbjct: 1   MKLQHLFSILPGIPENAFSHIEVTGVFNDARLVVPGSVFVAIRGNKLDGHTFIPDAVAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +VV        G   + V  V +    L+ LA             + +TG+ GKT+ 
Sbjct: 61  AAALVVEDKAKIPEGYEGV-VVQVPNSREVLDVLASRFYWDPGQELFCVGVTGTNGKTSV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELG 168
             M    L+  K     IG+ N+H+G    P  +            R           + 
Sbjct: 120 TYMTEAILNHGKIPTGVIGTVNHHLGDQVWPSEMTTPDPVFLQKRLREFRSAGALAVAME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     V  +  + T +   HL   + +E    AK  +F  L         + 
Sbjct: 180 VSSHALDQRRVDSVPFNTVIFTNLTRDHLDYHNTMESYLEAKQRLFTDLLWKTHKRPCFA 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    +   +    +      K++D +    K     +  +V       EV     
Sbjct: 240 IVNTADKFGRRLRVADPAVLWTYGEKDSDIRYEILKMDFALTHFKVWTPVGEGEVRLPMS 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  LG        ++  I+AL  F    GR +      N   F     ++  
Sbjct: 300 GTHNVMNALAALGAGLSAGLPLNICIEALDRFTGVPGRLQSVPNDKNLSVFVDY--AHTP 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +            + +   + R   + G     G         L   ++L     V ++ 
Sbjct: 358 DALENVLMALTKVRENLQSQSRIWTIFG----CGGDRDKGKRPLMAEMALKYSDEVVITS 413

Query: 409 FHVL------ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         ++D L                             +GDV+++  K 
Sbjct: 414 DNPRTEDPQTIIQDILAGVGGANKAKATTVVDRKDAITQTLKRAQEGDVILIAGKG 469


>gi|150016456|ref|YP_001308710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902921|gb|ABR33754.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 486

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 96/475 (20%), Positives = 167/475 (35%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   SI       VN I+ DSR     + F  +KG   DGH +I  A++ G
Sbjct: 1   MNLKSILKGIDYESIQGDIDIEVNKINYDSRKAGNDDVFVCVKGYATDGHKYIEKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V+  D+   I   +I +   +D   AL  +          K  II +TG+ GKTTT
Sbjct: 61  AKVIVIQDDI--EIKDENITIIKCNDTRKALALMGANYYDNPSSKIKIIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             M+   L    K    IG+  N IG                       +   V++ + E
Sbjct: 119 AFMIKHILEESNKKVGLIGTIANFIGDEKIHTERTTPESLELQELFSEMVDKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + +   + + T +   HL      E    AK ++FE           
Sbjct: 179 V--SSHSLALDRVYGIEFQVGIFTNLTRDHLDFHKTFENYYKAKFKLFERSRIKIVNV-- 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   + +  + L    IYSF     +DF+    +  S +   ++ L+ +  + V +
Sbjct: 235 -DDNYGRQVISDLNNLKCDDIYSFSVKSISDFKAFDEEMGSREIKFKLNLK-EDEQFVLN 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +     L   +      +       GR +R     N G+  +ID ++
Sbjct: 293 IPGEYNIYNALGAIAACFKLGMPIKDIKSGIENVV-VLGRCERVAKEYNLGYEIIIDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +GR I+V G     G             +S        +
Sbjct: 352 TPDGLE-----NILKTAKAFTKGRLISVFG----CGGDRDKVKRPEMGKISTDIADITIV 402

Query: 407 SGFHVLA------LKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +      +KD  A     +    E             +D DV+V+  K 
Sbjct: 403 TSDNPRSEEPLSIIKDIEAGIDKDNYFVIENRKEAIKKSIDIALDNDVIVIAGKG 457


>gi|239814044|ref|YP_002942954.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239800621|gb|ACS17688.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1584

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 111/497 (22%), Positives = 185/497 (37%), Gaps = 45/497 (9%)

Query: 3    PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ----------EAFFA------ 45
            P+WT   L +   G  +   P   FVN +                      F A      
Sbjct: 1099 PVWTAEHLQRITGGRWLVEPPPGWFVNSVV-------RGPRHLPLLPPPALFVAADYDTL 1151

Query: 46   ---------IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN 96
                     + G + D H  +    +K AG VV          +   P+  +DD +  + 
Sbjct: 1152 AAHENYSKRLPG-NPDRHADLPSLEKKLAGAVVA---HAVEGLAPDFPLLQLDDPIRGMI 1207

Query: 97   KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
             L  AAR R K  ++ +TG+VGK++T  ML   L    + +  + +YN+ +GVP  LA +
Sbjct: 1208 ALGEAARARFKGLVVGVTGTVGKSSTIAMLRDLLPEAARVHTTVDNYNSRVGVPAMLANL 1267

Query: 157  PVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D D  I E+  S L   R     + RPH+A+IT +  +     S +E+ A+ K+ IF 
Sbjct: 1268 GPDADVCILEMAQSGLWMDRGPISLMARPHVAIITEVGLSQTRQASTLEQTAAFKSRIFL 1327

Query: 216  GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            GLE  G   +         +  ++ AL    I+  G   +A+ ++               
Sbjct: 1328 GLEPGGVAIVPDHIPCLAQVV-RAAALTAGAIWVVGPGPDANIRVLDTHPEPGGGCRVRI 1386

Query: 276  LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        I                +       A  A            + R    
Sbjct: 1387 ATEGRSFEYLFPIASAGLVRNSALAFAALLAMGFDADAACARMPGVRLPASVMQVRTLRT 1446

Query: 336  QGFF--TLIDESYNANPASMKAAISVLSQISPHGEGRRIA---VLGDMCEMGELSQSFHI 390
            +     TLID+S+NA   SM+ A+  +       +        VLG +  +G  SQ+ H 
Sbjct: 1447 RAGIEATLIDDSWNAEVMSMRNAMEFVRTYRRADDAPVQRKIGVLGRIVNLGRDSQALHR 1506

Query: 391  DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             LAE L    I H+   G  +  L++ +P  +   + +  + L  ++ + L DGD+V++K
Sbjct: 1507 GLAEPLLASGIEHLVTHGAEMRWLREDVPAGLLGPHFDDAEKLADYLGTFLRDGDLVLLK 1566

Query: 451  SSN-SCGFYRLINLLLE 466
                   F  +   L +
Sbjct: 1567 GDRVGSDFGTIPQRLQQ 1583


>gi|229844912|ref|ZP_04465050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
 gi|229812293|gb|EEP47984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 6P18H1]
          Length = 488

 Score =  150 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 152/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KDDVELHSMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAI 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRSAVMGTIGN--GLLGQIIEAKNTTGSAVEIQSSLSNFKQ 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFASIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+   + L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGHQWLTELPDAIAVSMNADFKVGLHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|229159095|ref|ZP_04287146.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
 gi|228624362|gb|EEK81138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 4342]
          Length = 499

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   LS        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K+      G   + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGQI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++       +++       +       +     D+V++ 
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|119469209|ref|ZP_01612193.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
 gi|119447461|gb|EAW28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Alteromonadales bacterium TW-7]
          Length = 492

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 145/478 (30%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     +L+ I+       P   V+ + +DSR + P + F AIKG   DG  FI  A++K
Sbjct: 1   MRDLKSILKYIEI----DAPSQLVSHLRLDSRDVNPGDVFVAIKGHELDGGQFIAKAIEK 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+ +      +   S+  + V ++   L +LA     +      +I +TG+ GK+T
Sbjct: 57  GAVAVIADRLCEFDVAFESL--YLVSELDKKLAELASRFYDKPSHNLDLIGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T  M+     +               G P  L  +       +                 
Sbjct: 115 TTAMIAHL--AQYCNTQSAIIGTLGFGHPDNLTPLINTTPSAVDLQHILSDLHQADKKLV 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++      +   AV T ++  HL     +     AK  +F   +    +  
Sbjct: 173 AMEVSSHGLVQHRVAQCQFKAAVFTNLSRDHLDYHGDMASYGDAKLMLFRDFDPQLVVLN 232

Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+   + L+       I     +                  E    ++      ++V 
Sbjct: 233 QDDNQAGQWLEKYDFNNLICYGRKNLAPKNAQYVYFSDVDYSDEGISAQLSTSWGDIKVK 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+   L  +  L   ++  I       P  GR + +  A           
Sbjct: 293 SPLFGEFNLYNLTAALATLLGLGYPLEQLIAGCQQLQPVAGRMQAFSVAGKPTCVVDYAH 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +        +A    L  +  H  G    V G     G         L    +  N + V
Sbjct: 353 TP-------EALALALQALQKHVPGGVSCVFG----CGGDRDKGKRVLMAQAAEKNANKV 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L      H          +  ++    +VV++  K 
Sbjct: 402 IITSDNPRSEDPNVIIAEVASGLAAPQSAHLEADRASAISYAINNAASNEVVLIAGKG 459


>gi|86132603|ref|ZP_01051196.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
 gi|85816845|gb|EAQ38030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Dokdonia donghaensis MED134]
          Length = 487

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 159/473 (33%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+       +  +  DSR  +  + F AI+G   DGHD+I  AV +GA 
Sbjct: 4   LKDILYRVTLESVVGNTAIAITDVHFDSRKASLNDVFVAIRGTQSDGHDYIEKAVAQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++     +       I    V D   AL  +A            +I ITG+ GKTT   
Sbjct: 64  AIICEE--MPQQIVNGITYVKVADTSSALATIASNYYGNPSANLKLIGITGTNGKTTIAS 121

Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMS 170
           +L                         +      P +L       +          + +S
Sbjct: 122 LLYQLFKKAGYKTGLLSTVKIMVDTIEHKATHTTPDSLTINKYLAEMSAAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL       E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLHFEGGIFTNLSHDHLDYHETFAEYRDVKKKFFDELPKTAFALVNNDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD++ +  +       ++VQ Q   ++++      
Sbjct: 242 NGPVMVQNTKAKKV----TYALKSYADYRAQILENQLSGLLLKVQDQEVWVKLI------ 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             + N    L I +         ++AL +    E    R++  +++G  T I + Y   P
Sbjct: 292 -GSFNAYNLLAIFAAAELLELDQMEALQLLSELESVSGRFQYFISEGNVTAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E     +       G+   +    +  + S  +   +  S   
Sbjct: 350 DALKNVLETINDIRTKNEELITVI----GAGGDRDTTKRPKMGNIASALSTKAIITSDNP 405

Query: 409 --FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
              +  A+ + +   +   + +                     GD++++  K 
Sbjct: 406 RSENPEAIIEQIEAGVEPIHYKRILSITDRKQAIKTACQLANAGDIILIAGKG 458


>gi|228915178|ref|ZP_04078773.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844409|gb|EEM89465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 499

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 155/483 (32%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   LS        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K+      G   + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNINLSPKGIRFLVSSFNGEI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EVSLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTLDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++       +++       +       +     D+V++ 
Sbjct: 410 DFVFITSDNPCSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|332799089|ref|YP_004460588.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
 gi|332696824|gb|AEE91281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Tepidanaerobacter sp. Re1]
          Length = 482

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 154/474 (32%), Gaps = 49/474 (10%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               +L+Q I    S+       +  I  +S+ I     F AI G +YDGHDFI  A+++
Sbjct: 1   MNAQELIQIIPDILSVKGYTDVPIESIDYNSKRIKNGAIFVAIPGFNYDGHDFIPEALER 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GAG+V+    +             V D   AL   +         K  +I +TG+ GKTT
Sbjct: 61  GAGVVIGEKALDLG----GKLYIRVKDSRKALALSSAWFYGYPADKLKLIGVTGTSGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------HIGVPLTLARMPVDVDFGIFE------L 167
              +++  L  I      IG+  N                  +       + E      +
Sbjct: 117 VTYLISEMLKDIGICTGIIGTIGNVLNNRKLPTSHTTPESLELNQLFSKMVEENIEYLAM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           ++  + V T +   HL      E+  ++K ++F   ++      + 
Sbjct: 177 EVSSHSLKLQRVEGIKFDVGVFTNLTQDHLDFHKTFEDYFNSKKKLFSQSKQAVINIDDE 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  +            Y++G  K AD +    +  +     ++  + K   V +  
Sbjct: 237 SGKRLLSIINI-------PRYTYGLDKKADLRAENIRMTANGVSYDLVFRNKIYPVFYST 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +     L   +D  I  L       GR +      NQG   ++D ++ 
Sbjct: 290 PGLFSVYNSLAAITAGVALGFPIDDLINTLKKAKGVPGRFELVEN--NQGIIVIVDYAHK 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +        +VL  I     G+ I V G     G         +   +S     +  ++
Sbjct: 348 PDG-----LKNVLLTIREFCTGKIITVFG----CGGDRDKGKRPIMGKISSELSDYTIIT 398

Query: 408 GFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +       A+ + +   I     E             S    GD V++  K 
Sbjct: 399 SDNPRSEKPEAIIEQIESGIIGDNYEKITERAEAIKKAISIAKKGDAVLIAGKG 452


>gi|281421046|ref|ZP_06252045.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
 gi|281404964|gb|EFB35644.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella copri DSM 18205]
          Length = 487

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 156/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I+   I       V G++IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLQELLKNIEPVQIIGDADVEVTGVNIDSRKIKEGHLFVAMKGTQVDGHKFIPKALELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +       +    V     A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKSVLCED--MPEEKVEGVTYIQVASTEDAVGKVATLFYGDPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE---LG 168
             +L             + +             +    P+ L  +   +     E   + 
Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNMLLGKMVEAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++    + T +   HL      E   +AK   F+GL KT     N D
Sbjct: 179 CSSHAIAQKRIGGLQFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKTAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF+ R  +         + L+    EV    I
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSTRSMADFRARILECHFGG----MYLEIDGREVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S  H   GR +  +              Y  
Sbjct: 291 GKFNVSNLLAVYGAAIMLGKKPEDVLVVMSTLHSVSGRLEPIQSPEGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ + ++     G  I V G     G         L    ++     V ++ 
Sbjct: 347 TPDALENVLNAIHEVLEGKGGEVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 402

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L      +   V                   GDV++V  K 
Sbjct: 403 DNPRFEEPQDIINDMLAGLNAQQMKKVISIVDRKEAIRTACMLAKKGDVILVAGKG 458


>gi|312876346|ref|ZP_07736331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796840|gb|EFR13184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 500

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 157/475 (33%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A++ GA
Sbjct: 17  LKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            LVVV+     S     I      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 77  RLVVVDEFFDTSKIDGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168
            M+   L +  +    IG+  N IG               +     +M  +    +  + 
Sbjct: 137 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVV-ME 195

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S      +  +     + V T +   HL     +E   +AK ++FE  +K      +  
Sbjct: 196 VSSHSLELYRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFEMSKKRVVNADDSW 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 +             ++ K  +A    +  K    ++  E+   GK  E+  +  
Sbjct: 256 GKRIIEM--------YPDCVTYAKDSDAQVCTKNVKLFVNKNQFELWYNGKKEEITLNIP 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L        L  ++DT  K L       GR +                + + 
Sbjct: 308 GLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDG 367

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                   ++++  +    EGR++ + G     G         +   ++      V ++ 
Sbjct: 368 -------LLNLMKTVDDVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTS 416

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + + + + ++             +   +  + D +V+  K 
Sbjct: 417 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 471


>gi|15895398|ref|NP_348747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|21362710|sp|Q97H84|MURE1_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 1; AltName:
           Full=Meso-A2pm-adding enzyme 1; AltName:
           Full=Meso-diaminopimelate-adding enzyme 1; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           1; AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|15025119|gb|AAK80087.1|AE007713_12 UDP-N-acetylmuramyl tripeptide synthase, MurE [Clostridium
           acetobutylicum ATCC 824]
 gi|325509544|gb|ADZ21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum EA 2018]
          Length = 482

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 158/476 (33%), Gaps = 51/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++  ++   I       ++ ++ DSR +  +  FF I+G   DGHDFI  AV+KG
Sbjct: 1   MKLKKIIGDVKYELICGDLNVEIDNLNYDSRKVNEKGLFFCIEGYTSDGHDFIDKAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V            +  V  V+D   A+  +          K  +I ITG+ GKTT+
Sbjct: 61  ADVIVCTK---VPKKLPNCTVVKVEDGRKAMAVMGANFYDNPSHKLKLIGITGTNGKTTS 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166
             M+   L S       IG+  N+IG                       +   +D+ + E
Sbjct: 118 TYMMKSMLESSGYKVGLIGTIANYIGDKKIESHRTTPESLELQKLFSDMVHDKIDYCVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH   +  +  +V     + T +   HL      E    AK  +F+  +++     +
Sbjct: 178 V-SSHSLYLDRVYGIV-FEEGIFTNLTQDHLDFHKTFENYYKAKMILFKNSKRSIINIDD 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +          ++G ++ AD +    K  S  +  ++  +G    V  +
Sbjct: 236 KYG-------ERVFKDAGNDKITYGLTEKADLKAENLKMTSRGTEFDLCYRGLREHVKIN 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L ++         ++     L+      GR +      N  F  ++D ++
Sbjct: 289 IPGKYNVYNALGSVAACLNEGISIEKVKDGLNKLSSVPGRCEIVTHNTNLDFDVVLDYAH 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         VL       +GR I+V G     G         +   +         +
Sbjct: 349 TPDGLE-----KVLKASREFTKGRLISVFG----CGGDRDKTKRPIMGEIGSKLSDIAVI 399

Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +  +   +    +V   E                DV+V+  K 
Sbjct: 400 TSDNPRSENPEEIIKDIVQGIKTDNYV-IVENRKEAIKKAMLMAKKDDVIVLAGKG 454


>gi|78356084|ref|YP_387533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218489|gb|ABB37838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 484

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 152/479 (31%), Gaps = 50/479 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +F  L  A++   +          I IDSR +   + F A+ G   DG  FI  A
Sbjct: 1   MKSTLSFDALAAAVRAGLLN---------IRIDSRKVRQGDVFVALPGSSVDGGAFIADA 51

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +++GA  VV        + +    V   +D   AL  LA A    +     ++ ITG+ G
Sbjct: 52  LERGASYVVC-RPCSVPVQTGGAAVVVAEDPRKALGLLAAARYDTADTGFPLVGITGTNG 110

Query: 119 KTTTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTL--ARMPVDVDFGIFE- 166
           KTT   +L     +                       +  P  +    M  D+     E 
Sbjct: 111 KTTCTYLLDHLFRTAGHVTGLLGTVNFRWPGHDEAAPMTTPDCVELHSMLSDMRDAGVEA 170

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTI 223
             + +S     +      R   A++T +   HL     +E   SAK+ +F    ++    
Sbjct: 171 AFMEVSSHALDQQRVSGARFAAALLTNLTQDHLDYHHDMEAYFSAKSRLFLELPDEDKVC 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +   L  +       ++           Q        +   + +  +GK+ E+
Sbjct: 231 AVNADDPYGRRLLPQLGRGVGYSVQGTVVPDCQVLQATILSSGPDGLHLSMDFEGKTWEL 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N+         +   V+   + L+ F    GR +R         F    
Sbjct: 291 RSPLVGAFNASNLAGVQAAGLAMGLPVEAM-QGLASFSGVPGRMERIENDKGLNVFVDYA 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A         +VL  +   G  R IAV G     G         L       +   
Sbjct: 350 HTPDA-------LENVLRALRAAGFARVIAVFG----CGGDRDRTKRPLMGQAVCRHADV 398

Query: 404 VWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L+  +         +  +K  L +  HV                   GD V+V  K 
Sbjct: 399 AVLTSDNPRTEDPVAIMADVKPGLAQCDHVVEEPDRRKALAAAVEMARPGDAVLVAGKG 457


>gi|260581818|ref|ZP_05849614.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
 gi|260095011|gb|EEW78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Haemophilus influenzae NT127]
          Length = 488

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|253568792|ref|ZP_04846202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298387944|ref|ZP_06997493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
 gi|251840811|gb|EES68892.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 1_1_6]
 gi|298259351|gb|EFI02226.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/474 (18%), Positives = 163/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +    +  + G++IDSR +   + F A++G   DGH +I  A+QKGA 
Sbjct: 3   LNELLKAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++        +    I    V D   A+ K+A         +  ++ +TG+ GKTT   
Sbjct: 63  AILCEDIPEEPVA--GITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVIESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQEIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|145633137|ref|ZP_01788869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
 gi|144986363|gb|EDJ92942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 3655]
          Length = 488

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L   +  +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|325844613|ref|ZP_08168256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
 gi|325489038|gb|EGC91425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sp. HGF1]
          Length = 483

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 43/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + +            +  +  DSR +     FFAIKG   DGH +I  AV+ G
Sbjct: 1   MDLKQMSELLGYTLEH--ENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV    +     + +   F V +   AL  ++            ++ + G+ GKTT 
Sbjct: 59  AIAVVGEESL-----NPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFE----------LGM 169
             ++      +      IG+  + +G     +R   +  D++  + E          + +
Sbjct: 114 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 173

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G        +     + T I   HL      E+    K   F               
Sbjct: 174 SSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDK-KMAII 232

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +   +   ++    I ++G    AD   +  +   E++   + ++G+ +      I 
Sbjct: 233 NCDDEHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQ--MTIP 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+   L +++   +      + +           R+         T++ +  +  
Sbjct: 291 LFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPSGVTVVIDYAHNP 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A       VLS ++    G  I VLG     G         +    + Y   HV+ +  
Sbjct: 351 DA----IFQVLSCLNVISTGNIITVLGA----GGNRDKAKRKIMGRHATYLSDHVFFTSD 402

Query: 410 HVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + D L  +  V+Y      +             D VV+  K 
Sbjct: 403 NPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKG 454


>gi|293376046|ref|ZP_06622299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
 gi|292645347|gb|EFF63404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Turicibacter sanguinis PC909]
          Length = 485

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/472 (15%), Positives = 149/472 (31%), Gaps = 43/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + +            +  +  DSR +     FFAIKG   DGH +I  AV+ G
Sbjct: 3   MDLKQMSELLGYTLEH--ENQEIKNLVYDSRQVTKGSVFFAIKGQDSDGHQYIEDAVRNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV    +     + +   F V +   AL  ++            ++ + G+ GKTT 
Sbjct: 61  AIAVVGEESL-----NPACLYFEVFNTKKALAIISSKFYGEPSKNMNLVGVIGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFE----------LGM 169
             ++      +      IG+  + +G     +R   +  D++  + E          + +
Sbjct: 116 TYLIQHVFECLGIDSGLIGTNGSWVGQKKKASRTTPLSPDLNELLQEGVRHNLPYVVMEV 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G        +     + T I   HL      E+    K   F               
Sbjct: 176 SSHGIKENRVDQLDFDRLIFTNITEEHLDYHKTFEDYLFTKMRPFIQFSDYDDK-KMAII 234

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +   +   ++    I ++G    AD   +  +   E++   + ++G+ +      I 
Sbjct: 235 NCDDEHASSFISVTNSKILTYGCQAKADIFAKDIEYSLERTNFSLYVKGQFICQ--MTIP 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+   L +++   +      + +           R+         T++ +  +  
Sbjct: 293 LFGKYNVYNVLSVLAYFYSLGYAPEQIVPFIENVSVIEGRFEYIQAPSGVTVVIDYAHNP 352

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A       VLS ++    G  I VLG     G         +    + Y   HV+ +  
Sbjct: 353 DA----IFQVLSCLNVISTGNIITVLGA----GGNRDKAKRKIMGRHATYLSDHVFFTSD 404

Query: 410 HVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + D L  +  V+Y      +             D VV+  K 
Sbjct: 405 NPRNEDPLSIIYDLLSGTSSVNYTVIVDREKAIEAALKKAKPNDFVVILGKG 456


>gi|328950281|ref|YP_004367616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
 gi|328450605|gb|AEB11506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinithermus hydrothermalis DSM 14884]
          Length = 482

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 161/485 (33%), Gaps = 66/485 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P+ T  +L    +       P   V G++ DSR + P   + A++G   DGH FI  A
Sbjct: 1   MTPVTTVAELFALYRA----PGPPHPVKGVTHDSRRVQPGFVYVALRGQRCDGHRFIPDA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVG 118
           VQ+GA  +V    +        +P   V D   AL++LA A          +I +TG+ G
Sbjct: 57  VQRGAVAIVGEEPLEP-----GVPYLRVPDARRALSRLAAAFYGFPSTRLFVIGVTGTDG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------DFGIFEL----- 167
           KTTT  ++   L+   +    I +     G    L                + E+     
Sbjct: 112 KTTTSCLVHHLLTRTGRGAGLISTVGLRYGEETRLLEGHFTTPEAPEVQAALAEMVRRGL 171

Query: 168 -----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                  S     +     V   +AV T ++P HL     +E    AKA +         
Sbjct: 172 THAVLETSSHALAQHRVADVAYDLAVWTNLSPEHLDFHGSLEAYFQAKAALVNRAG---F 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN    +   L            ++    +   ++  + ++ ++     ++  G + E
Sbjct: 229 SILNAGCPYAMRL--------THRPHTTYGVQAGAYRAVRVRESTDGLRFTLEAPGFTGE 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG +  +N L  L         ++ A+ AL+ F    GR +  +         ++
Sbjct: 281 AFLPMIGRYNVENALAALAAAHRAGVPLEEALPALARFSGVPGRMQILQA---HPIRAVV 337

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++     +       L+ + P   GR I V+G     GE   +    L          
Sbjct: 338 DFAHTPKALA-----KALTALRPTTPGRLIVVIGAA---GERDPAKRAPLGRTAVTL-AD 388

Query: 403 HVWLSGFHVL-----ALKDALPRSIH-------VHYS--ETMDGLFLFIQSSLVDGDVVV 448
               +          A+   + R           HY+          +  S    GD VV
Sbjct: 389 FAVFTEEDARSEDVHAILQEMERGAREAGGVRGTHYALKPDRRDAIRYALSLARPGDTVV 448

Query: 449 V--KS 451
              K 
Sbjct: 449 FAGKG 453


>gi|301169873|emb|CBW29477.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Haemophilus influenzae 10810]
          Length = 488

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVITTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|332292529|ref|YP_004431138.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170615|gb|AEE19870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 487

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 155/473 (32%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   ++       +  I  DSR ++  + F A++G   DGHD+I  AV +GA 
Sbjct: 4   LKDILYKVTLETVVGNTAVAITNIYFDSRKVSLNDVFVAVRGTQSDGHDYIAKAVNQGAL 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++     +       I    V D   AL  +A            +I ITG+ GKTT   
Sbjct: 64  AIICEE--LPEQIVNGITYVKVADTSSALATIASNFYGNPSANLKLIGITGTNGKTTIAS 121

Query: 125 MLTIALSSIKKTY---------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L                         Y      P             +       + +S
Sbjct: 122 LLYQLFQKAGYKTGLLSTVKILVDKTEYKATHTTPDSLTINKYLAEMSEAGVEYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +R    + T ++  HL       E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLRFEGGIFTNLSHDHLDYHDTFAEYRDVKKKFFDELPKTAFALVNTDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD++ +  +       +++Q Q   ++++     Y
Sbjct: 242 NGAVMVQNTKAKKV----TYALKSYADYKAQILENQLSGLLLKIQDQEVWVKLIGSFNAY 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++         +           I+AL +    E    R++  +++G  T I + Y   P
Sbjct: 298 NLLAIFATAELLGL-------DQIEALKLLSELESVSGRFQYFISEGNVTAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E     V       G+   +    +  + S  +   +  S   
Sbjct: 350 DALKNVLETINDIRTKNEELITVV----GAGGDRDTTKRPKMGHIASALSTKTIITSDNP 405

Query: 409 --FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 A+ + +           +                   GD++++  K 
Sbjct: 406 RSEKPEAIIEQVEAGVEPINYKKILSITDRKQAIKTACQLANPGDIILIAGKG 458


>gi|145637116|ref|ZP_01792779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
 gi|145269770|gb|EDK09710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittHH]
          Length = 488

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKGLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|330828040|ref|YP_004390992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
 gi|328803176|gb|AEB48375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Aeromonas veronii B565]
          Length = 493

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 151/459 (32%), Gaps = 42/459 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   +  I +DSR + P   F AI+G   DG  FI  AV +GA  VV   D      S 
Sbjct: 16  APALTLTDIQLDSRRVGPGSLFVAIRGHQVDGRRFIEQAVAQGATAVVFEEDGEFIPPST 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P  G+ D+   L+ LA     +   K  ++ ITG+ GK+TT  ++    + +      
Sbjct: 76  PVPCIGMRDLPAHLSALAGYFYDQPAQKLDLVGITGTNGKSTTALLVANWRTLLGGKAGV 135

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVR 183
           +G+  N  G+   L          +                  + +S  G ++     + 
Sbjct: 136 MGTIGN--GLFGNLIEAENTTGSAVQVQANLAALQAQGADLVAMEVSSHGLVQHRVAALP 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T ++  HL     +E   +AK ++ + ++++  +    D+   + L+    A+ 
Sbjct: 194 FAAAVFTNLSRDHLDYHGTMEAYGAAKEQLLQLVDESNAVINRDDELGAKWLEKYPAAVA 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                            ++     +    ++     +  +    +G     N+L  +G++
Sbjct: 254 FSVNGPIEHHSGRQLTAQQLDFHQQGFRAQINSSWGNGVLSAPLLGRFNVSNVLAAMGVM 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L  D +  +       P  GR + +              + +A           L  +
Sbjct: 314 LVLGYDFNELLATAPKLQPVTGRMECFGGGDTPLAVVDYAHTPDA-------LEKALQAL 366

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H  G+   ++G     G         +   ++      V L+  +         +  +
Sbjct: 367 RVHCTGQLWCLIG----CGGDRDRGKRPMMAAMAEQYADRVILTDDNPRTEEPARIMADM 422

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L     V                    D+++V  K 
Sbjct: 423 VAGLRDPAAVQVEHDRVKAIALAIGQASKQDIILVAGKG 461


>gi|269926067|ref|YP_003322690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269789727|gb|ACZ41868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 508

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 156/484 (32%), Gaps = 53/484 (10%)

Query: 7   FHDLLQAI-QGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            + L++A+ + H +G       V GIS D+R + P   F A+ G H DG  FI +A++KG
Sbjct: 7   LNKLVKALPKAHIVGNYSDDTVVTGISADTREMKPGSIFVALPGFHVDGKKFIPNAIEKG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV     +    L +PV  VD+   A ++LA         K  +I +TG+ GKTTT
Sbjct: 67  AKAVVVE---GSYQPDLQVPVIIVDNARLAFSRLAAEFWDNPSHKLKVIGVTGTNGKTTT 123

Query: 123 KEMLTIALSSIK-------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--- 166
             M++  L S                 +      ++    P  L  +   +     E   
Sbjct: 124 TYMISSMLESADASTGFITTVDYKIANHQWKHEEHSTTPQPDRLHELLYRMLQAGVEYAV 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIF 224
           +  S  G        V   +AV T +   HL     +E+     A+     G        
Sbjct: 184 IESSSHGLKLHRLEDVAYDVAVFTNVTSEHLELHGTVEQYRLDKARLFQLLGNHPDKGCG 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                +  +             ++++ +     D      ++  E     V  +G S E+
Sbjct: 244 KWGVINLDDPNAQLYIDSTKGKVFTYSQQDENADLIGNIIRRSEEGVTFRVHYKGNSTEI 303

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L  +G+       +D    AL  F    GR    +       FT++ 
Sbjct: 304 NLPISGDYNVYNALAAIGVAITQNIPIDVCKSALERFTGVPGR---MQVISMGQPFTVVI 360

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +   +       VL  +     GR  AV G   E       +       ++      
Sbjct: 361 DYAHTEDS----LEKVLITLKQRTRGRLFAVFGSAGE----RDPYKRAPMGKVAAKYADF 412

Query: 404 VWLSGFHVL---------ALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L+               + +                           S    GD V++
Sbjct: 413 MILTNEDPRGEDEMQILLDIAEGARSVGAIEGRDYICIPDRKAAIYEALSRASSGDTVLL 472

Query: 450 --KS 451
             K 
Sbjct: 473 AGKG 476


>gi|329124139|ref|ZP_08252686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
 gi|327467564|gb|EGF13062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus aegyptius ATCC 11116]
          Length = 488

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|319897400|ref|YP_004135597.1| udp-n-acetylmuramyl-tripeptide synthetase (mure) [Haemophilus
           influenzae F3031]
 gi|317432906|emb|CBY81272.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae F3031]
          Length = 488

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLSRHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L   +  +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWVELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGAGFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMSTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|117924068|ref|YP_864685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
 gi|117607824|gb|ABK43279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetococcus sp. MC-1]
          Length = 495

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 149/474 (31%), Gaps = 46/474 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   I   ++    +  +  +  DSR   P   F A+ G   DG D+I  A++  A
Sbjct: 4   TLKSLAANIDQLTVLGDGETVITQLCNDSRLCEPGSLFAALPGSRVDGRDYIPQALELEA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             ++ +    +     + P     D   AL  +A A   +   K   I ITG+ GK+T  
Sbjct: 64  AAILHD---GSLSLDPNTPQLIHPDPRRALAHVAAAFYGQPQKKLKSIVITGTNGKSTVA 120

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTL-------ARMPVDVDFGIFEL 167
            M    L    +    I +                P  +         +  +  + + E 
Sbjct: 121 SMCATILRHSGQRVGLISTVGIDIEGQKLATSHTTPDAITLYGLLADMVQANCRWLVME- 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     ++P +A+ T ++  HL     +     AKA++           L  
Sbjct: 180 -ASSHALDQHRLVGIQPDVALFTNLSRDHLDYHGDMGAYFQAKAKL-FREYHPKLALLPS 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D+  + L +     G+    ++G+        ++     + +   +Q + +S  V    
Sbjct: 238 SDAHAQALNSICREQGVAV-QTYGRVARQGVYAKQISAAIDCTRFVLQQKNQSAPVTLMA 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L        +  D++T  + L+ F    GR +      N         + +
Sbjct: 297 PGRFNLDNALAAASACLGMDLDLETVAEGLNRFQSVAGRVQAIHEGQNFAVLVDFAHTPD 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWL 406
           A          +LS + P   G+   V G     G    S     + E         +  
Sbjct: 357 ALD-------RLLSSLRPLTPGKLWVVFG----CGGDKDSGKRPHMGECAGRLAHFPIIT 405

Query: 407 SG----FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     A++  + R          +  +    +   +   GD VV+  K 
Sbjct: 406 DDNPRSEDPAAIRAQIMRGCRNRNAQEMDDREDAITYALVNAQPGDTVVIAGKG 459


>gi|268318245|ref|YP_003291964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
 gi|262335779|gb|ACY49576.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodothermus marinus DSM
           4252]
          Length = 511

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/463 (19%), Positives = 158/463 (34%), Gaps = 45/463 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMV 75
             +G      +  ++ +S+ + P+  F A++G   DGH FI  A+++GA  VV       
Sbjct: 27  TVVGSATARKLTHLTDNSQEVQPRGLFVAVRGERVDGHRFIEQAIERGAVAVVGEFVPEA 86

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133
            +          V +   AL  LA    +    +  +I ITG+ GKTTT  ++   L++I
Sbjct: 87  FAERFPKASFVQVSNSRRALGILATIFHMNPARRLRLIGITGTNGKTTTAFLVYHMLNAI 146

Query: 134 KKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
            +    IG+     G                  L R    V      + +S     +   
Sbjct: 147 GQETGLIGTVCYRFGRHELPASNTTPGPIELNHLLRRMTGVPCKNCVMEVSSHALEQERV 206

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   IAV T +   HL      E    AK ++F+GL    T   N DD     + A +
Sbjct: 207 AGLSFSIAVFTNLTRDHLDYHGSFEAYLKAKKKLFDGLTFRATALYNIDDPSGPAMVADT 266

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A       S+G+ ++A  ++R        S   + L           +G   A N+L  
Sbjct: 267 QA----CCISYGQREDAQIRMR----IVGHSLEGLTLNIDGRFQRFPLVGCFNAYNLLAA 318

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+   +  D D  ++AL       GR +R+         T     Y   P +++  +  
Sbjct: 319 YGVGRAMGLDPDLLLEALGRVPQIPGRFERF----TFEDGTTAIVDYAHTPDALENVLRT 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           + ++ P G      V G     G         +   ++      V ++  +         
Sbjct: 375 IREVMPEGARLWC-VFG----CGGERDRGKRPMMGAVAERLADCVIVTSDNPRSEDPLQI 429

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++  +       +                 GDVV+V  K 
Sbjct: 430 FEDIRQGMRHPEAALWEVDRARAIEQAAKLCRPGDVVLVAGKG 472


>gi|319407508|emb|CBI81156.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella sp. 1-1C]
          Length = 484

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 155/486 (31%), Gaps = 57/486 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++ + + V    +LS
Sbjct: 17  ASIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLS 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136
           IPV  V D    L   A         T++A+TG+ GKT+    +      I         
Sbjct: 75  IPVIHVLDARHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGT 134

Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
               +        +  P  +    +  +    E         S  G  +     V    A
Sbjct: 135 VGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAAA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   H+     IE    AK  +F  L       L + D  +      +     + +
Sbjct: 195 AFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQV 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G++      L + +    +  +E ++            G     N LM  G+     
Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQRVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D   ++L       GR +        G    +D ++            +L  + P  
Sbjct: 314 APSDMVFRSLEKLQGAPGRLELVGN-TEDGAPIYVDYAHKPEALE-----QMLLSVRPFT 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDAL 418
           +GR + V G     G         L   ++      V ++  +            +  A+
Sbjct: 368 QGRLVLVFG----CGGDRDQGKRALMGKIAGNKADIVIVTDDNPRTEAPEKIRKDILQAV 423

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINL 463
           P +I +           +    L  GD ++V  K  +             S    ++I  
Sbjct: 424 PEAIEI---ADRGQAIEYAVELLKAGDTLIVAGKG-HENGQIIGQEIYPFSDRL-KVIAA 478

Query: 464 LLEEFP 469
           L E   
Sbjct: 479 LKERNK 484


>gi|218258177|ref|ZP_03474579.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225700|gb|EEC98350.1| hypothetical protein PRABACTJOHN_00233 [Parabacteroides johnsonii
           DSM 18315]
          Length = 490

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 151/479 (31%), Gaps = 51/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+  ++   +       ++GI  DSR +     F A++G   DGH +I  A++KGA 
Sbjct: 3   LKELIHPLEVLEVVGNADVEISGIQSDSRKVEKGFLFVAVRGTAVDGHAYIQSAIEKGAA 62

Query: 67  LVVVNTDMVASIGSLSI-----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            +V     V    ++ +         V D   AL K   A          ++ +TG+ GK
Sbjct: 63  AIVCEEIPVLPDENMQVSESKPVFIRVKDSADALGKSLSAWYENPSDNLILVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165
           TT   +L      +            Y    +       P       L    VD      
Sbjct: 123 TTIATLLYEMFRKMGHKVGLLSTVCNYIDGEAIPTDHTTPDPVTLHNLMARMVDAGCEYA 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +     +  +  + T +   HL     +E    AK + F+ L  +     
Sbjct: 183 FMEVSSHSIDQKRISGLSFNGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPASAFALT 242

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A  +    ++     ADF+ +  +   E + M V  +        
Sbjct: 243 NADDKSGLVMLQNTAAKKL----TYSLRTLADFKGKILESHFEGTEMLVNGREVM----T 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+L   G    L  D +  +  LS  H   GR +  +  L          +
Sbjct: 295 RFVGRFNAYNLLAVYGAAVSLGKDPEEVLVVLSDLHSVSGRFQTIQSPLGYTAIVDYAHT 354

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +A    +     VL      G GR I V+G     G         +    +      + 
Sbjct: 355 PDALTNVLSGIHEVLD-----GNGRVITVVG----CGGNRDKGKRPIMAKEAAKLSDQLI 405

Query: 406 LS---------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+            +  +   L  +                        GDV++V  K 
Sbjct: 406 LTSDNPRFEEPDEIIKDMVAGLNAADMERTLCITDRAQAIKTATMLARKGDVILVAGKG 464


>gi|42781669|ref|NP_978916.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|42737592|gb|AAS41524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
          Length = 492

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/485 (17%), Positives = 160/485 (32%), Gaps = 58/485 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I   + F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ +P   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEMPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161
           GKTTT  +L   LS                      +  N    P     + +    + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVDSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219
           + + E+    L   R      +  IAV T +   HL       E    K       G + 
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFHEYKHVKGLLFSRLGNDL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           + T       +  +        +    + ++G    AD Q +      +     V     
Sbjct: 232 STTDKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNITLSPKGIRFLVSSFNG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      +    
Sbjct: 292 EIEVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A         +VLS IS   +G+ I V G     G    +    +   ++  
Sbjct: 352 VDYAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDTKKRSIMGGIAGS 400

Query: 400 NISHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVV 448
               V+++  +         +  ++    ++ +++Y  E   +       +     D+V+
Sbjct: 401 YSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAITHAINMASSNDIVL 460

Query: 449 V--KS 451
           +  K 
Sbjct: 461 IAGKG 465


>gi|312134656|ref|YP_004001994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
 gi|311774707|gb|ADQ04194.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           owensensis OL]
          Length = 495

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 158/475 (33%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A+Q GA
Sbjct: 12  LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            L+VV+     S     I      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 72  RLIVVDEFFDTSKIKGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168
            M+   L +  +    IG+  N IG               +     +M  +    +  + 
Sbjct: 132 FMIKSILEAHGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMRNEGVDSVV-ME 190

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S      F  +     + V T +   HL     +E   SAK ++F   +K      +  
Sbjct: 191 VSSHSLELFRVYASDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSKKRVINADDSW 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 +             ++ K  NA    R  K    ++  ++    K  E++ +  
Sbjct: 251 GKRIIEM--------YPDCMTYAKDSNATVCARNIKLYVNKNQFDLWYNDKKEEILLNIP 302

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L       +L  ++DT  K L       GR +                + + 
Sbjct: 303 GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNEKFTVVIDYAHTPDG 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                   ++++  ++   +GR++ + G     G         +   ++      V ++ 
Sbjct: 363 -------LLNLMRTVNEVADGRKVLLFG----CGGDRDRAKRPIMGEIAGRMADFVIVTS 411

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + + + + ++             +   +  + D +V+  K 
Sbjct: 412 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 466


>gi|330997822|ref|ZP_08321657.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
 gi|329569710|gb|EGG51475.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Paraprevotella xylaniphila YIT
           11841]
          Length = 485

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 91/477 (19%), Positives = 159/477 (33%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+++    +       + GI++DSR + P + F A+KG   DGH +I  A++K
Sbjct: 2   MMELDILLKSVSVVRVEGDTARNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAIEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  VV        + +  +    V D   A+ +L+        SK  ++ +TG+ GKTT
Sbjct: 62  GAVAVVCEA--WPEVQAEGVTYVQVKDSESAVGRLSTVFYGDPTSKLQLVGVTGTNGKTT 119

Query: 122 TKEMLTIALS---SIKKTYACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
              +L              + + +Y +   VP                   D       +
Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     ++    + T +   HL      E    AK   F+GL K      N 
Sbjct: 180 EVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNV 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     + ++     ADF+ +  ++  E     + L     EV    
Sbjct: 240 DDRNGMIMVQNTKA----VVNTYSLRAVADFKAKVLEESFEG----MCLDVNGKEVSVPF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L        +    +  + ALS   P  GR +  R              Y 
Sbjct: 292 IGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSREGVTAIVD----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S +++I     G  I V G     G         +    ++ N   V ++
Sbjct: 348 HTPDALVNVLSTVNEI-LKRRGEVITVCGA----GGNRDKGKRPIMAQEAVKNSDRVIIT 402

Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L +     V                   GDVV+V  K 
Sbjct: 403 SDNPRFEEPQEIINDMLAGLDKEQMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459


>gi|312794108|ref|YP_004027031.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181248|gb|ADQ41418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 495

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 156/475 (32%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A++ GA
Sbjct: 12  LKDLIENIDAMETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKTDGHEYIDEAIKNGA 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            LVVV+     S     +      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 72  RLVVVDEFFDTSKIEGKVDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTT 131

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168
            M+   L +  +    IG+  N IG               +     +M  +    +  + 
Sbjct: 132 FMIKSILEANSQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKNEGVDSVV-ME 190

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S      F  +     + V T +   HL     +E   +AK ++F   +K      +  
Sbjct: 191 VSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSKKRVVNADDSW 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 +             ++ K  +A    +  K    ++  E+   GK  E+  +  
Sbjct: 251 GKRIIEM--------YPDCVTYAKDSDAQVCAKNIKLFVNKNQFEMWYNGKKEEITLNIP 302

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L        L  ++DT  K L       GR +                + + 
Sbjct: 303 GLFSIYNSLAAAACCISLGIELDTIKKGLEDLKAVPGRFEIVESNERFTIVIDYAHTPDG 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                   ++++  +    EGR++ + G     G         +   ++      V ++ 
Sbjct: 363 -------LLNLMKTVDDVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTS 411

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + + + + ++             +   +  + D +V+  K 
Sbjct: 412 DNPRTEDPLKIIADILEGIRKTNVEYVVIPDRYEAIKYAIKNAKENDFIVLAGKG 466


>gi|110639128|ref|YP_679337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
 gi|122966615|sp|Q11RG9|MURE_CYTH3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110281809|gb|ABG59995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 486

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+  +   S+       V  I  DSR +     F A++G   DGH FI   +QKGA 
Sbjct: 3   IKDLIYKVSLISVSGRTDVDVTAICFDSRKVEKGSMFIAVRGVSSDGHSFIADVIQKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VV   ++     +    +  V D   AL  +A         K  ++ +TG+ GKTTT  
Sbjct: 63  AVVCE-ELPEIESTADCTIIQVKDSAEALGMIASNFYDSPSSKLKLVGVTGTNGKTTTVT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELG 168
           +L      +   Y           +   + +        I                  + 
Sbjct: 122 LLYRLFRKL--GYKTGLLSTVENIIEDKVVQATHTTPDAISLNKLLADMVKAGCTHCFME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     ++    + + I   HL      +E   AK   F+GL       +N D
Sbjct: 180 VSSHAAVQRRIAGLQFAGGLFSNITHDHLDYHKTFDEYIKAKKLFFDGLPNDSFALINSD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A      Y++     ADF+ +      +   M+V        ++ +  
Sbjct: 240 DKRGRVMIQNTRA----KTYTYSLLALADFKGKLISTTMQGLEMDVDGIQAWFRLIGNFN 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            Y++       + +            + L      E    R+   ++    T+I + Y  
Sbjct: 296 AYNLLAVYATAVLLGE-------DKEEVLMQLSTIEAANGRFEQQISATRITVIVD-YAH 347

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  +  ++++    +   I V+G     G    +    +   ++     HV L+ 
Sbjct: 348 TPDALKNVLETITELKGANK--IITVVG----CGGNRDAAKRPVMADIACQFSDHVVLTS 401

Query: 409 -----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+   + + + +   +                +    GD+++V  K 
Sbjct: 402 DNPRNEEPQAILTEMEKGVRIVDKKKVLSVLDRKEAIKVACTLASTGDIILVAGKG 457


>gi|239826518|ref|YP_002949142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. WCH70]
 gi|239806811|gb|ACS23876.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. WCH70]
          Length = 490

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 148/460 (32%), Gaps = 50/460 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I +DSR +     F  IKG   DGHDF   AV+ GA  V+    +      + 
Sbjct: 19  ENPTITSIEMDSRQVKNGALFICIKGFTVDGHDFAKQAVENGAVAVIAERPL-----DVD 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V D   A+  LA A   +   +  +I +TG+ GKTTT  ++        K    I
Sbjct: 74  VPVIVVRDSRRAMAMLADAFYGQPTHRLHLIGVTGTNGKTTTTHIIEHIARKANKKTGLI 133

Query: 141 GSYNNHIGVPLT----------------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ +  IG                       +   VD  + E+    L   R        
Sbjct: 134 GTVHIKIGDHTYPTKNTTPESLLLQRTFKQMVDEGVDVAVMEVSSHALHMGRVHGCDYD- 192

Query: 185 HIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +AV T +   HL     +EE   A        G             +  +        +
Sbjct: 193 -VAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDHERPKFAVLNNDDPASKYYKHM 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              ++ ++G   ++D   +K          ++     ++ V    IG     N+L  +  
Sbjct: 252 TAASVITYGIETDSDIMAKKIDIVPSGMSFDLITPNGTVRVKTRLIGLFNVYNLLAAVSA 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    +   ++A+       GR   +        FT+I + Y   P S++  +  + Q
Sbjct: 312 CLVSGIPLPVIVEAIEEISGVAGR---FETVDEGQNFTVIVD-YAHTPDSLENVLKTIRQ 367

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
            +         V+G     G         L    ++        +  +            
Sbjct: 368 FAQKK---VYVVVG----CGGDRDRTKRPLMAKTAVKYADVAIFTSDNPRSEDPEQILRD 420

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +P   +V           +      +GD++++  K 
Sbjct: 421 MEAGVPGERYVTIV-DRKEAIYYAIEQAQEGDIILIAGKG 459


>gi|332518986|ref|ZP_08395453.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044834|gb|EGI81027.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lacinutrix algicola
           5H-3-7-4]
          Length = 487

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 158/476 (33%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  D+L  +  +++      +V  I  +SRS+A  + F AIKG   DGHD+I +A+++
Sbjct: 1   MTSLIDILYKVTINAVVGTTNVYVRNIHFNSRSVAVNDLFVAIKGSVVDGHDYIENAIKQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  VV     +       I    V+D   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GAIAVVCE--YLPKTLKEGISYIVVEDSSIALAIMASNYYGNPSSNLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFG-IFEL 167
              +L                            ++     + +      ++ +      +
Sbjct: 119 IASLLFQLFKKAGYKVGLLSTVVIKVDNKDYKATHTTPDSLTINRYLSEMNNEGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     + T ++  HL       E    K   F+ L  +     N 
Sbjct: 179 EVSSHGIHQKRTQGLDFAGGIFTNLSHDHLDYHETFAEYRDVKKSFFDNLSSSAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      Y +G    A+++ +  +       +++        ++   
Sbjct: 239 DDKNGAIMLQNTKA----KQYKYGLKNYANYKAQILENSFSGMLLKINDSDVWTRLI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N    L I +          + L +    E    R++  +++   T I + Y 
Sbjct: 292 ----GGFNASNVLAIYATAELLGLEKTEILRLISELESVSGRFQYLISEENITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     +       G+   +    +  + S  +   ++ S
Sbjct: 347 HTPDALKNVLETINSIRTKNEELITVI----GCGGDRDATKRPKMGHIASALSTKAIFTS 402

Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + + + +     +                     GD++++  K 
Sbjct: 403 DNPRTEVPELIIEDIEKGVEPQNFKKTLSIVDRKQAIKTACQLANAGDIILIAGKG 458


>gi|312130989|ref|YP_003998329.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
 gi|311907535|gb|ADQ17976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leadbetterella byssophila DSM 17132]
          Length = 485

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 155/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  I   ++       +  I+ DSR +     F A+ G   DGHD+I  A+  GA 
Sbjct: 3   LSDILYNISLITVSGKTDIEIEQITFDSRQVNKGTLFVAVPGTQSDGHDYIETAIDAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            V+    ++  +    +    V++   ++   A           T++ +TG+ GKT+   
Sbjct: 63  AVLCE--VLPKMLEEEVTYIQVENSAKSMGIAAGNFYGNPSKRLTLVGVTGTNGKTSVAT 120

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + +      +P T                         + +S
Sbjct: 121 LLFKLFRKLGYKCGLISTVQNQIEDEIIPATHTTPDSITLNALLHEMHQKGCAFVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     +     + T I   HL      +E   AK   F+ L  T     N DD 
Sbjct: 181 SHSVVQGRISGLHFSGGIFTNITQDHLDFHKTFDEYIKAKKGFFDALPSTAFALTNVDDR 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +++   + A      +S+     ADF+     +  +     +Q++    EV    IG 
Sbjct: 241 NGKVMLQNTKAEK----HSYSLKNIADFKG----KVLDCGLFGLQMEIDKQEVWFKLIGQ 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  + +  +  LS   P  GR ++    +     T+    Y   P
Sbjct: 293 FNAYNLLAVYGAAVLLEENPENILTELSQLTPPPGRFEQ----VISSQQTVGIVDYAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++K  +  ++ +    E     V       G         L   ++      V L+  +
Sbjct: 349 DALKNVLETINGLRQGHERVITVV-----GCGGNRDKGKRPLMAGIACELSDTVILTSDN 403

Query: 411 V---------LALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       ++  +P  +   V              +     D+++V  K 
Sbjct: 404 PRFEEPEDILKDMEAGIPITKQKRVQVIVDRREAIRQAVALAGPEDIILVAGKG 457


>gi|145627899|ref|ZP_01783700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145639347|ref|ZP_01794953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|144979674|gb|EDJ89333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.1-21]
 gi|145271650|gb|EDK11561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittII]
 gi|309751221|gb|ADO81205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2866]
          Length = 488

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 154/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +   +A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKVAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|119358490|ref|YP_913134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
 gi|166224773|sp|A1BJY3|MURE_CHLPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|119355839|gb|ABL66710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeobacteroides DSM 266]
          Length = 512

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 164/477 (34%), Gaps = 36/477 (7%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  DL++ I     + G      V+ IS DSR + P   F A++G   DGH FI  AV+
Sbjct: 1   MSLADLIRQIPVLEAAGGSTTSLPVSMISSDSRDVLPGALFIAVRGYSADGHRFIKSAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120
           +GA  V+   ++   +   S+P   V+D   AL   A            +I +TG+ GKT
Sbjct: 61  RGAAAVLCE-EIPPVLPDASLPYLRVEDARQALALAARQFYGFASDALHVIGVTGTNGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166
           TT  ++T  L++       IG+     G                  L R  +D    +  
Sbjct: 120 TTARLITAMLNACGIRTGYIGTNLCTFGEQQIPLDRTTPEAHILHALFRRMLDSGCSVAV 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S    +    + +  H AV T ++  HL     ++E A AK ++FE L   G   +N
Sbjct: 180 MEVSSHALVLQRVYGITFHAAVFTNLSMEHLDFHKTMQEYAGAKRQLFEQLSPQGFAVIN 239

Query: 227 YDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD   E + +K +            G+      +    +   +                
Sbjct: 240 SDDPRAEEMVSKINPEKRFCCTLDQTGRVAGDASRRFSAELIDQSIASATIRLCFPDAQQ 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N++  L   ++       +    +      G   R    +++     +  
Sbjct: 300 TISTVLPGQYNVMNLLQAAAVGCGMGLGSPVVAAALDALPGVAGRMERIMDRRRKEFVFV 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++  A+S L+ +      R I V G     G             +++ N   V
Sbjct: 360 DYAHTPDALFKALSTLNALKS-PASRLIVVFG----CGGNRDRLKRPEMGRIAVENADLV 414

Query: 405 WLS-----GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+           + D + + I V                 + L  GDV++V  K 
Sbjct: 415 ILTSDNPRDEDPEMIIDEIEKGIRVKNHKRITDRAQAIRTAVALLQPGDVLLVAGKG 471


>gi|49474461|ref|YP_032503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
 gi|49239965|emb|CAF26370.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella quintana str. Toulouse]
          Length = 483

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 153/477 (32%), Gaps = 50/477 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + GI+ DSR + P   F A++G   DG  +I  A+++GA  +V +    A + + S+PV
Sbjct: 20  EITGITADSRQVLPGYVFVALQGNQDDGRHYINDAIKRGAQAIVTD--CNAVLENFSVPV 77

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V DV  +L   A          ++A+TG+ GKT+    L    + +    A IG+   
Sbjct: 78  LRVLDVRHSLAIAAARFYGSQPEIVVAVTGTSGKTSVVSFLRQIWTHVGLCAASIGTVGI 137

Query: 146 HIGVPLTLARMPVDV----DFGIFEL----------GMSHLGEIRFLTHLVRPHIAVITT 191
                                 ++E+            S  G  +     VR   A  T 
Sbjct: 138 VSPHRNDSCSFTTPDPVVLQRLLYEMSNEGVTHAALEASSHGLDQSRLDGVRLTAAAFTN 197

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H+     +E+   AK  +F+ L       L + D  +            + I + G
Sbjct: 198 LGRDHMDYHKDVEDYLQAKMRLFDTLLPQDAPALVFADDIYSQKVIDIVTKARRRILTIG 257

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +       + + +    +  +E +++           G     N LM  G+         
Sbjct: 258 RKGKF-ITINRIEHQRLKQCVECRVENNIYTFDLPLAGNFQVTNALMAAGLAIATGVSPK 316

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               +L +     GR +      N      ID ++            VL  + P  +GR 
Sbjct: 317 KVFHSLEILQGAPGRLELVGKTENNA-PVYIDYAHKPEALE-----QVLLSVRPFTQGRL 370

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPRSIHVH 425
           I V G     G         L   ++      V ++  +          KD L  +    
Sbjct: 371 ILVFG----CGGDRDQGKRPLMGKIAENKADIVIVTDDNPRTEMPEKIRKDILQAAPRAI 426

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINLLLEE 467
                     +    L   D +++  K  +             S    ++I+ L E 
Sbjct: 427 EIADRGEAISYAVGLLKAEDTLIIAGKG-HENGQVIGKKTYPFSDRL-KVIDALQER 481


>gi|148826254|ref|YP_001291007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
 gi|166224777|sp|A5UCX3|MURE_HAEIE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|148716414|gb|ABQ98624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittEE]
          Length = 488

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGLRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTKLPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|307564672|ref|ZP_07627202.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
 gi|307346600|gb|EFN91907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella amnii CRIS 21A-A]
          Length = 485

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 153/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++  SI       + G++IDSR I     F AIKG   DGH FI  A++ G
Sbjct: 1   MKLTDLLSEVKTLSITGDTDIDITGVNIDSRKIDVGHIFVAIKGTQVDGHCFINKAIESG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++    V S     I    V+     + K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKAILLED--VPSELKDGITYIQVESTEKEVGKIATMFYGNPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168
             +L     +                A      +    P+ L ++   +     E   + 
Sbjct: 119 ATLLYNMFRAFGYKVGLLSTVCNYIDAEAHHTEHTTPDPIELNQLLSKMVEAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIHQHRIGGLYFTGGIFTNLTRDHLDYHKTFENYRNAKKMFFDSLPKKAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A     I ++   + ADF+ R  +   E     + L     EV    I
Sbjct: 239 DKNGMIMVQNCKA----NIKTYSIQRMADFRARIIECHFEG----MYLDIDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    D  +  LS      GR +  R              Y  
Sbjct: 291 GKFNVSNLLAVYGAAVMLGKSKDDILLVLSTLKSVNGRLEPIRSPEGFTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +S +  +     G+ I V G     G         L    ++ +   V L+ 
Sbjct: 347 TPDALSNVLSAIHDVMEGKTGQIITVCGA----GGNRDKGKRPLMAQEAVKHSDVVILTS 402

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L  +    V                   GDV++V  K 
Sbjct: 403 DNPRFEDPQDIINDMVAGLDETQLNKVLTIVDRREAMRTAAKLAKKGDVILVAGKG 458


>gi|298207888|ref|YP_003716067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850529|gb|EAP88397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 486

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/476 (13%), Positives = 146/476 (30%), Gaps = 47/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D+L  +  + +       +  +  DSR ++  + F A +G   DGH++I +AV +
Sbjct: 1   MITLKDILYRVSINKVIGNTNVAITNVEFDSRKVSLNDVFVATRGTVSDGHEYIKNAVNQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V     +       +    V +   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GAIAIVCEE--LPKDTVNGVTYVKVQNAQQALAFMASNFYENPSENLQLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167
              +L    +        + +    +G                        D+      +
Sbjct: 119 IASLLYQLYTKAGFKVGLLSTVKIMVGNIEHKATHTTPDSLTINKYLSKMTDIGCEYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  ++    + T ++  HL   S   E    K + F+ L  +     N 
Sbjct: 179 EVSSHGIAQHRTTGLKFTGGIFTNLSHDHLDYHSTFAEYRDVKKKFFDELPSSAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       ++     AD++ +  +       +++            G
Sbjct: 239 DDKNGMVMLQNTKAKK----QTYALKSIADYKAQILENQFSGLLLKLNNNELW--SKLIG 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                    +     +  +           S+    E      R              Y 
Sbjct: 293 NFNAYNLLAIFATTELLGMQTM-------ESLRLISELESVNGRFQYLIKNKITAIVDYA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     V       G+   +    +  + S+ +   ++ S
Sbjct: 346 HTPDALKNVLETINAIRTKNEELITVV----GCGGDRDATKRPKMGHIASVLSTKVIFTS 401

Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                     + +A+   +   + +                S   + D++++  K 
Sbjct: 402 DNPRTEDPNKIIEAIESGVEPQHFKKTLSIADRKQAIKTACSFAKENDIILIAGKG 457


>gi|329964560|ref|ZP_08301614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
 gi|328524960|gb|EGF52012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides fluxus YIT 12057]
          Length = 482

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+AIQ   I       + G++IDSR I     F A++G   DGH +I  A++KG
Sbjct: 1   MKLSDLLKAIQPVQITGSTDMEITGVNIDSRLIEAGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++             I    V D   A+ K A        SK  ++ +TG+ GKTT 
Sbjct: 61  AVAILCEE--WPEELKAGITYIQVKDSEDAVGKTATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y +   VP                   D       + 
Sbjct: 119 ATLLYDTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K+     N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDEMPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DRNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITA 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDIQKTISIADRREAIKTACMLAQPGDVILVAGKG 457


>gi|89891771|ref|ZP_01203273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
 gi|89515926|gb|EAS18591.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate
           ligase, murE [Flavobacteria bacterium BBFL7]
          Length = 488

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 140/477 (29%), Gaps = 47/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL  +    +       V  +  DSR+I   + F A+KG   DGH FI  AV  
Sbjct: 1   MRNLKDLLYKVSLELVIGPTDIDVEQVQFDSRAIRKGDVFIALKGTAVDGHQFIEKAVAS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V++    +    +  +    VD+   AL  +             ++ +TG+ GKTT
Sbjct: 61  GAVAVLLED--LPDYQAEHVTYIQVDNAHKALALIGANYYDNPSKDLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYN---------NHIGVPLT-----LARMPVDVDFGIFEL 167
           T  +L      +      I +                P             D       +
Sbjct: 119 TTSLLYQLFKKLGFKTGLISTVEILIDGKVIPTKHTTPDPVTINSHLAAMRDAGVDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +     +     + T +   HL   +   E    K   F+ L        N 
Sbjct: 179 EVSSHGIDQQRITGLHFVGGMFTNLTHDHLDYHNTFAEYRDVKKRFFDMLPSDAFALTNR 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   E +   + A  +     +      D++ +  +       ++V  Q    +++   
Sbjct: 239 DDKNGEFMLQNTKARKLG----YALKTYTDYRAQIIENQFGGLQLKVNNQELWTKMIGEF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++       + +    T      ++A+S      GR   ++              Y 
Sbjct: 295 NAYNVLAIYGCAIELGLEST----EVLEAISQLDGVSGR---FQYFTTAAQHITAIVDYA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     V       G         +   ++      +  +
Sbjct: 348 HTPDALKNVLETINAIRTRNEKLITVV-----GCGGDRDKSKRPVMANIAASLSDLIIFT 402

Query: 408 GFHVL-----ALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
             +       A+   +   +     +                      D++++  K 
Sbjct: 403 SDNPRTENPDAILKDMEAGVEAIDFKKTLTVTDRKNAIKTAVQMAQQNDIILIAGKG 459


>gi|227538297|ref|ZP_03968346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241812|gb|EEI91827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 484

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/477 (19%), Positives = 169/477 (35%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L AI    +       V  +  DSR       F A++G H DGH F+  A+++
Sbjct: 1   MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRKANEGSLFVAVRGVHTDGHLFVEKAIEQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           G  L++V    +       +    V D   AL   A            ++ +TG+ GKTT
Sbjct: 61  GCTLIMVEE--MPEKKHEDVTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167
              +L    +++      + +  N IG   +P T             R  VD       +
Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +R    + + I   HL      +    AK + F+ L++      N 
Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+    ++   + A       ++G    ADF+ +  +   +     + L  +  EV    
Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDG----MLLNIEGHEVWVKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  +    + ALS     EGR +                 Y 
Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAITSKNGVIGIVD----YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S ++ +    E + I VLG     G+  ++   ++AEV +  +   V ++
Sbjct: 347 HTPDAVANVLSTINNLR-KKEQQIITVLG---CGGDRDKTKRPEMAEVAAKMS-DKVIIT 401

Query: 408 GFHVL------ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +KD        R  +V                   GD+V+V  K 
Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458


>gi|304383926|ref|ZP_07366383.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
 gi|304335004|gb|EFM01277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella marshii DSM
           16973]
          Length = 483

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I   +I       +  ++IDSR I     F A++G   DGH FI  A+++G
Sbjct: 1   MKLKELLKGIHPTTIIGEEDIEIAAVNIDSRRIGKGHLFIAMRGTQVDGHRFIPKAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++  T  +       +    V     A  K+A            ++ +TG+ GKTT 
Sbjct: 61  ASAILCET--IPEQQKAGVTYIVVSSTEDAAGKVATIFYGNPSMRLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y     VP                   +       + 
Sbjct: 119 ATLLYNMFRKFGYKCGLLSTVCNYIEEEAVPADHTTPDPIALNQLLHRMAESGCEYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      +   +AK   F+ L K+     N D
Sbjct: 179 CSSHAIAQKRISGLHFSGGIFTNLTRDHLDYHKTFDNYRNAKKAFFDSLPKSSFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +     A    TI ++     ADF+ +  +   E  ++E+  +   ++ +    
Sbjct: 239 DKNGMYMVQNCKA----TIKTYSLRNMADFKAKILECHFEGMYLEIDGREVGVQFIGKFN 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++       + +       +      L     +    +          +    ++   
Sbjct: 295 VSNLLAVYGTAMMLGKQPEDILLAMST-LKSVSGRLEPIRSQEGVTAVVDYAHTPDALAN 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
              ++   +         G+G+ I V G     G         L    +      V ++ 
Sbjct: 354 VLNAIHEVLD--------GKGKVITVCGA----GGNRDKGKRPLMAQEAAKQSDRVIITS 401

Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    ++ D       + +                       GDV+++  K 
Sbjct: 402 DNPRDEDPQSIIDDMLAGLNMQQRKKTLSIVDRKEAIRTAVMMAERGDVILIAGKG 457


>gi|126663230|ref|ZP_01734228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624888|gb|EAZ95578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteria bacterium BAL38]
          Length = 477

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/464 (14%), Positives = 144/464 (31%), Gaps = 48/464 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            ++       ++ I  DSR I   + F AIKG   +GHD+I  A+  GA  ++     + 
Sbjct: 4   EAVHGTTDIAISKIEFDSRKIELNDVFVAIKGTLSNGHDYIEKALSLGAIAIICEE--LP 61

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
           S     +    V D   AL  L+            ++ +TG+ GKTT   +L        
Sbjct: 62  SNIVNGVTYIKVKDTNEALAFLSANYFDNPSHNIKLVGVTGTNGKTTIASLLYQLFKKAG 121

Query: 135 K---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                            Y      P            +        + +S  G  +  T 
Sbjct: 122 YKVGLLSTVKIMVDNEEYKATHTTPDSLMLNYYLDKMIGAGCEFCFMEVSSHGIHQKRTE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    V T ++  HL   +   E    K   F+GL K      N DD    ++   + 
Sbjct: 182 ALQFVGGVFTNLSHDHLDYHNTFAEYRDVKKSFFDGLSKDAFAITNIDDKNGAIMLQNTK 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +    S+     AD++ +  +       +++      ++++     Y++     + +
Sbjct: 242 AKKL----SYALKSYADYKAQILENQLSGLLLKINDNEVWVKLIGSFNAYNLLAIYGVAV 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +           ++AL +    E    R++  ++    T I + Y   P +++  +  +
Sbjct: 298 ELG-------IDKMEALRLLSELESVSGRFQFIVSDLKITAIVD-YAHTPDALENVLKTI 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
             I    E     V       G         +   ++         +       +   + 
Sbjct: 350 EDIRTKNEQLITVV-----GCGGDRDKTKRPIMANIASSLSDKAIFTSDNPRTENPETII 404

Query: 416 DALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           + + + +     +                      D++++  K 
Sbjct: 405 EEMEKGVEPQNFKKTVSILDRKQAIKTACQLANPNDIILIAGKG 448


>gi|332881746|ref|ZP_08449394.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680385|gb|EGJ53334.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 485

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 159/477 (33%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+++    +       + GI++DSR + P + F A+KG   DGH +I  AV+K
Sbjct: 2   MMELDILLKSVSVVRVTGDTVRNITGINMDSRLVQPGDLFVAVKGTQADGHAYIGKAVEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  VV        + +  +    V D   A+ +LA        SK  +I +TG+ GKTT
Sbjct: 62  GAVAVVCEA--WPEVQAEGVTYVQVKDSESAVGRLATVFYGDPTSKLQLIGVTGTNGKTT 119

Query: 122 TKEMLTIALS---SIKKTYACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
              +L              + + +Y +   VP                   D       +
Sbjct: 120 IATLLYNMFRVFGYKCGLCSTVCNYIDDEAVPTEHTTPDPITLNRLLGRMADEGCKYAFM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     ++    + T +   HL      E    AK   F+GL K      N 
Sbjct: 180 EVSSHAVAQHRIAGLKFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDGLPKGAFAVTNV 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     + ++     ADF+ +  ++  E     + L     EV    
Sbjct: 240 DDRNGMIMVQNTKA----VVKTYSLRAAADFKAKVLEESFEG----MCLDVNGKEVSVPF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L        +    +  + ALS   P  GR +  R              Y 
Sbjct: 292 IGRFNVSNLLAVYAAAVCMGRGAEDVLVALSTLRPVNGRFETIRSKEGVTAIVD----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S +++I     G  I V G     G         +    ++ N   V ++
Sbjct: 348 HTPDALVNVLSTVNEI-LKRRGEVITVCGA----GGNRDKGKRPIMAQEAVKNSDRVIIT 402

Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L +     V                   GDVV+V  K 
Sbjct: 403 SDNPRFEEPQEIINDMLAGLDKEEMRKVISIVDRKEAIRTACMMARPGDVVLVAGKG 459


>gi|15606817|ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
 gi|8134574|sp|O67631|MURE_AQUAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2984050|gb|AAC07591.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
          Length = 482

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 91/446 (20%), Positives = 154/446 (34%), Gaps = 50/446 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+++S+ +     FFAIKG  +DGH+FI  A ++GA  VVV   + +      +PV 
Sbjct: 23  VKGITLNSKEVKKGYLFFAIKGTRFDGHNFIREAEERGAYAVVVERPVSSK-----VPVI 77

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D   AL K A     +      +I ITG+ GKTTT  ++   L    +    IG+  
Sbjct: 78  IVEDTRKALGKSAHEFFGKPSERLNVIGITGTNGKTTTTHLIEKILLEAGEKTGLIGTIY 137

Query: 145 NH-------IGVPLTLARMPVDVDFGIFELGM-------SHLGEIRFLTHLVRPHIAVIT 190
                     G                +ELG        S     ++  +  R    + T
Sbjct: 138 YRLGEKILGSGRTTPDQITWHRTLKEFYELGAKNVVAEISSHALDQYRVYPTRFEAVLFT 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E+  ++KA++F   E    I    D     LLK       I      
Sbjct: 198 NLSQDHLDYHKTMEDYFASKAKLFTEYESKVKIINADDTYGKRLLK-------ITHGEII 250

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              K  D ++  ++     S + +  +GK  E   + IG   A N+   +        + 
Sbjct: 251 TYGKKGDLKILNFRTDFRGSALRIAFKGKEYEFSTNLIGDFQAYNLSAAIAYALWKGIEP 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +AL   +             +  F  +ID ++  +        +VL       +G+
Sbjct: 311 DLIQRALKCVNVPGRF----EVVHSDKFTVIIDYAHTPDAVE-----NVLRTARKLSKGK 361

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421
            I+V G     G         L    +      + L+  +            + D +   
Sbjct: 362 LISVFGA----GGNRDREKRPLMGKAAEKYSDLIILTSDNPRDEEPEKIIEDILDGISEK 417

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVV 447
             V                  +GD+V
Sbjct: 418 DKVIIEADRRKAIKKAIDMAKEGDMV 443


>gi|319900362|ref|YP_004160090.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
 gi|319415393|gb|ADV42504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides helcogenes P 36-108]
          Length = 483

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 163/477 (34%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    DLL+ IQ   I       + G++IDSR I     F A++G   DGH +I  A++K
Sbjct: 2   LMKLSDLLKTIQPVHITGSTDLEITGVNIDSRLIGAGHLFMAMRGTQTDGHAYIPAAIEK 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V+     +       I    V D   A+ K+A A      SK  ++ +TG+ GKTT
Sbjct: 62  GAIAVLCED--LPKEQKSGITYVQVKDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
              +L              + + +Y +   VP                   D       +
Sbjct: 120 IATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     ++    + T +   HL     +E    AK + F+ + K+     N 
Sbjct: 180 EVSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNL 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    
Sbjct: 240 DDKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L   G   +L    +  + ALS  HP  GR    R              Y 
Sbjct: 292 IGKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPKGFTAIVD----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++
Sbjct: 348 HTPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIIT 402

Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L +                         GDV++V  K 
Sbjct: 403 SDNPRFEEPQDIINDMLAGLGKDDLQKTVSITDRREAIKAACMLAQPGDVILVAGKG 459


>gi|302871364|ref|YP_003840000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574223|gb|ADL42014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 500

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 158/475 (33%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A+Q GA
Sbjct: 17  LKDLIENIDVLETNVGDFDKDITDIAYNSKNAKEGSAFVCIKGFKTDGHEYIDEAIQNGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            LVVV+     S     I      +   AL  ++            +I +TG+ GKT+T 
Sbjct: 77  RLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFAHPSKDFLLIGVTGTNGKTSTT 136

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELG 168
            M+   L +  +    IG+  N IG               +     +M  +    +  + 
Sbjct: 137 FMIKSILEANGQKVGLIGTIKNMIGSKEIEAQHTTPESYDLQKLFWQMKSEGVDSVV-ME 195

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S      F  +     + V T +   HL     +E   SAK ++F   +K      +  
Sbjct: 196 VSSHSLELFRVYACDFDVGVFTNLTQDHLDFHGTMENYFSAKLKLFGMSKKRVVNADDSW 255

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 +             ++ K  +A+   +  K    ++  ++    K   ++ +  
Sbjct: 256 GKRIIEM--------YPDCITYAKDSDANVCAQNIKLFVNKNQFDLYYNNKKENILLNIP 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L       +L  ++DT  K L       GR +                + + 
Sbjct: 308 GLFSIYNSLAAAACCILLGIELDTIKKGLEELKAVPGRFEIVESNQKFTVVIDYAHTPDG 367

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                   ++++  ++   +GR++ + G     G         +   ++      V ++ 
Sbjct: 368 -------LLNLMKTVNEVADGRKVLLFG----CGGDRDRTKRPIMGEIAGKMADFVIVTS 416

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + + + + ++             +   +  + D +V+  K 
Sbjct: 417 DNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 471


>gi|68249682|ref|YP_248794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|81335888|sp|Q4QLG3|MURE_HAEI8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68057881|gb|AAX88134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 86-028NP]
 gi|309973400|gb|ADO96601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R2846]
          Length = 488

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFYDSPSKNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLLGQIVEAKNTTGSAVEIQSSLSTFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|319899162|ref|YP_004159255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
 gi|319403126|emb|CBI76684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella clarridgeiae 73]
          Length = 483

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/454 (18%), Positives = 154/454 (33%), Gaps = 41/454 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               + GIS DSR I P   F A+KG   DG +++  A+++GA ++V + + V    +  
Sbjct: 17  ASIDITGISADSRQILPGYVFVALKGNQRDGREYVNDAIKRGARVIVTDHNFV--FENSL 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136
           +PV  V +V  +L   A          ++A+TG+ GKT+    +      +         
Sbjct: 75  VPVVRVLNVRHSLAIAAARFYNSQPEIMVAVTGTSGKTSVVSFIRQIWKYVGCCAASIGT 134

Query: 137 -----YACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188
                       +     P+ L R+  +  + G+    L  S  G  +     VR   A 
Sbjct: 135 VGVVSPKRHDLGSLTTPDPVMLQRLLCEIANEGVTHAALEASSHGLDQCRIDGVRLAAAA 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   H+     IE+   AK  +F  L       L + D  +            + + 
Sbjct: 195 FTNLGRDHMDYHKCIEDYFHAKMRLFNTLLPQDAPALIFADDIYSQKVIDIVRRAHRQVL 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G++      L + +    +  +E ++           +G     N LM  G+     A
Sbjct: 255 TIGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLVGDFQVANALMAAGLAIATRA 313

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D   ++L       GR +        G    +D ++            VL  + P  +
Sbjct: 314 SPDMVFRSLEKLQGAPGRLELV-GKTEDGAPVYVDYAHKPEALE-----QVLLSVRPFTQ 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALP 419
           GR I V G     G         L   ++      V ++  +            +  A+P
Sbjct: 368 GRLILVFG----CGGDRDQGKRALMGTIAGNKADIVIVTDDNPRTEAPEKIRKDILQAVP 423

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +I +           +    L  GD ++V  K 
Sbjct: 424 EAIEI---ADRAEAIYYAVRLLKTGDTLIVAGKG 454


>gi|149371573|ref|ZP_01890989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
 gi|149355200|gb|EDM43760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [unidentified eubacterium SCB49]
          Length = 487

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 160/473 (33%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +    +       +  I+ DSR +   + F AIKG   DGHD+I  AV +GA 
Sbjct: 4   LKDILYKVTLDKVLGNTAVAIRNINFDSRQVGLDDVFVAIKGVQSDGHDYIKKAVDQGAI 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            ++  T     I    I    V+D   AL  +A            ++ +TG+ GKTT   
Sbjct: 64  AIICETIPSEIIN--GITYIQVEDSQEALAIMADNYYGNPSAQIKLVGVTGTNGKTTIAT 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMS 170
           +L     +       + +    +G                    R  VD       + +S
Sbjct: 122 LLYNLFMAAGYETGLLSTVKIMVGKQQYKATHTTPDSLTINRYLREMVDAGVSYCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     + T ++  HL      +E    K + F+ L KT    +N DD 
Sbjct: 182 SHGIHQKRTEGLTFAGGIFTNLSHDHLDYHKDFKEYRDVKKKFFDQLSKTAFALVNADDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     AD + +  +   +   +++  Q   ++++      
Sbjct: 242 NGMVMLQNTSAKKV----TYALKSMADHKAQILENQLQGLLLKLDGQELWVKLI------ 291

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L I +         I+ L +    E    R++  ++    T + + Y   P
Sbjct: 292 -GNFNAYNVLAIYATAELLGLETIETLQLISTLESVDGRFQYFISNTKVTAVVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++K  +  ++ I    E     V       G+   +    + ++ +  +   ++ S   
Sbjct: 350 DALKNVLETINTIRTGNEQLITVV----GCGGDRDVTKRPIMGKIAAQLSTKAIFTSDNP 405

Query: 409 --FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                 A+ + +   +     +                    + D++++  K 
Sbjct: 406 RTEQPEAIIEQIEAGVEPIDFKKTLSITDRKQAIKTACQLANENDIILIAGKG 458


>gi|303235595|ref|ZP_07322202.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
 gi|302484042|gb|EFL47030.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase [Prevotella disiens FB035-09AN]
          Length = 486

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 163/476 (34%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++   I    +  + GI+IDSR I     F AIKG   DGH +I  A++ G
Sbjct: 1   MKLNELLKNVKPIQIIGDTEKNIIGINIDSRKIEKDHLFVAIKGTQTDGHKYIDKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++V    +    S +I    V     A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  ACAILVED--IPEKLSENITYIQVKSTEEAVGKVATTFYGDPSHKLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y +   VP +                V+       + 
Sbjct: 119 ATLLYNMFRKFGHKVGLLSTVCNYIDDKAVPASHTTPDPIELNILLAKMVEEGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++    + T +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIHQRRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKMFFDDLGKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A    T+ ++   + ADF+    +   E     + L+    EV    I
Sbjct: 239 DKNGMIMVQNCKA----TVKTYSTKRAADFKAHLLECHFEG----MYLEVNGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + ALS      GR        +    T I + Y  
Sbjct: 291 GKFNVSNLLAVYGAAVMLGKKPEDILVALSALKNVNGR---LEPITSLDGITAIID-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  + ++     G  I V G     G         L  + ++    +V L+ 
Sbjct: 347 TPDALENVLLAIHEVLEGKGGHIITVCGA----GGNRDKGKRPLMALEAVKKSDNVILTS 402

Query: 409 FHVL---------ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + + L   +   V                   GDVV++  K 
Sbjct: 403 DNPRNEDPQAIINDMLEGLDNTQKKKVLTIVNRKEAIRAACMMAHKGDVVLIAGKG 458


>gi|282859042|ref|ZP_06268178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
 gi|282588210|gb|EFB93379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella bivia JCVIHMP010]
          Length = 485

 Score =  148 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 154/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++  +I       + GI+IDSR I     F A+KG   DGH FI  A++ G
Sbjct: 1   MKLTDLLKGVKTLNINGNADIDIAGINIDSRKIKAGHLFVAVKGTQVDGHQFINKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+V    + +     +    V      + K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKAVLVED--MPTDLKEDVTYVQVASTETEVGKIATIFYGNPTKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168
             +L             I +  N+I             P+ L ++  ++     E   + 
Sbjct: 119 ATLLYNMFRKFGYKVGLISTVCNYIDDEARPTDHTTPDPIELNQLLGEMVAAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     V T +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIHQHRIGGLHFEGGVFTNLTRDHLDYHKTFENYRNAKKMFFDSLSKNAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A     I ++   + ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMIMVQNCKA----NIKTYSMQRMADFRAKIIECHFEG----MYLEVDGKEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    D  + ALS      GR                   Y  
Sbjct: 291 GKFNVSNLLAVYGTAIMLGKSQDDILLALSTLKSVNGRLDPVHSPEGFTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  +  +     G+ I V G     G         L    ++     V L+ 
Sbjct: 347 TPDALENVLGAIHDVLEGKNGKVITVCGA----GGNRDKGKRPLMAQEAVKQSDTVILTS 402

Query: 409 FHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L  +                        GDV++V  K 
Sbjct: 403 DNPRFEDPQAIIDDMVAGLDANQRKKVLTIVDRREAMRTAAMMAKKGDVILVAGKG 458


>gi|326797504|ref|YP_004315323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
 gi|326548268|gb|ADZ76653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium sp. 21]
          Length = 487

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 153/477 (32%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   +L  +    +       V+ +  DSR +   + F A++G   DGH FI  AV  
Sbjct: 1   MISLSKILNGVSIKQLIGSMDVTVHAVRFDSRQVVDGDLFVAVRGTLTDGHVFIDKAVAL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +VV     +    S  I    V++   AL  +A         K  ++ +TG+ GKTT
Sbjct: 61  GAKIVVCEQ--LPQDLSGHITYIQVENAGFALGLIAANFYDNPSAKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFEL 167
              +L                   K    +    +    P++L  +    V+       +
Sbjct: 119 VATLLYKLFVELGFRVGLISTVQNKVNERVIESTHTTPDPISLNELLCEMVNSGCDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     +     V T +   HL      +    AK   F+ L K+    +N 
Sbjct: 179 EVSSHAVAQHRITGLSFVGGVFTNLTHDHLDFHKTFDAYLKAKKAFFDMLPKSAFALVNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       ++G    ADF+ R  +       M++  +   + +V   
Sbjct: 239 DDKNGSVMLQNTDAYKK----TYGLKNIADFKGRIVESHFNGMLMQIDTREVWIRLVGAF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++     + + ++   T  V T +  L+    +          +    +    ++  
Sbjct: 295 NAYNLLAVYSVAI-LLEQDTTRVLTILSRLTGAEGRFDTLVSGNGVIGIVDYAHTPDAVE 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++        QI        IAVLG     G             ++      V L+
Sbjct: 354 NVLRTIVDLRKNKEQI--------IAVLG----CGGDRDKTKRPEMAAVAANLSDKVILT 401

Query: 408 GFH---------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +  ++  +P     H                    GD+V++  K 
Sbjct: 402 SDNPRSEDPQQIIREMEAGIPADKKRHVFSITDRYEAIKAAVHLAQPGDIVLIAGKG 458


>gi|229173249|ref|ZP_04300796.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
 gi|228610219|gb|EEK67494.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus MM3]
          Length = 500

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 158/483 (32%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLIKETIGDMNVEITGLEMDSRKITSGNLFICVSG--IDGFLEDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A            +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYSYPSNEMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   L+        +G+    IG                          + D+ 
Sbjct: 123 TTTSYLLEKILTDYGFQTGIMGNNGVKIGSKWYPTDINTQESPALQRNLQMMKNHNTDYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      EE    K       G + + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFEEYKHVKGLLFSRLGNDFSA 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T       +  +        +    + ++G +  AD Q +     S+     V      +
Sbjct: 241 TDKKIAILNADDPSVEYFKKVTSAEVITYGINNGADVQAKSITLSSKGIQFLVSSFNGEI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+  + +G     N L  +    +    +     +LS     +    R         F +
Sbjct: 301 EINLNLVGRFNVYNALAVITATLVEGIPLTNISDSLSH---VKSIEGRMEIIDENQDFLV 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I +  +    S  A  +VLS IS   + + I V G     G    +    +   ++    
Sbjct: 358 IVDYAH----SPDALENVLSTISEFSKAKIITVFG----CGGDRDAKKRPIMGEIAGGYS 409

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++    ++ +++Y  E   +             D+V++ 
Sbjct: 410 DFVYITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIQMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|167764160|ref|ZP_02436287.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
 gi|167698276|gb|EDS14855.1| hypothetical protein BACSTE_02544 [Bacteroides stercoris ATCC
           43183]
          Length = 482

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 164/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   I    +  + G++IDSR +A    F A++G   DGH +I  A++KG
Sbjct: 1   MKLSELLKAIQPVQIIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +    +  +    V D   A+ K+A        SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLCED--MPEETNPDVTYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y +   VP                   D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDRPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDSIRSPKGITAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDLQKTISIADRKEAIKTACMLAQPGDVILVAGKG 457


>gi|289809142|ref|ZP_06539771.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 216

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 5/210 (2%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
            P   F A+KG  +D HDF   A   GAG ++V+  +      + +P   V D   A  +
Sbjct: 2   TPGCLFVALKGERFDAHDFADKAKANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQ 56

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R++  A ++A+TGS GKT+ KEM    LS    T     ++NN IGVP+TL R+ 
Sbjct: 57  LAAWVRMQVPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTASNFNNDIGVPITLLRLN 116

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +  +A AK EI+ GL
Sbjct: 117 HDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGL 176

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            + G   +N D++ +   ++      +   
Sbjct: 177 PENGIAIMNADNNDWLNWQSIIGDRQVWRF 206


>gi|218512669|ref|ZP_03509509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           8C-3]
          Length = 216

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 120/211 (56%), Positives = 154/211 (72%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           FFAIKG   DGHD+   A+  GA L+VV+   + ++G L++P+  VDDVL AL +L  A+
Sbjct: 3   FFAIKGDRVDGHDYASMAMANGASLLVVSEARLPAMGRLTVPMIVVDDVLAALGRLGQAS 62

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R RS+A IIA+TGSVGKTTTKEML   LS   K +A + S+NNH GVPLTLARMP D D+
Sbjct: 63  RERSRAKIIAVTGSVGKTTTKEMLRHVLSPSGKVHASVASFNNHWGVPLTLARMPDDTDY 122

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G+FE+GM+H GEIR L  ++RP +AVITTIAPAHL NF  I+EIA+AKAEIFEGLE  G 
Sbjct: 123 GVFEVGMNHPGEIRPLVTMIRPDVAVITTIAPAHLGNFKSIKEIAAAKAEIFEGLEPGGH 182

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           + LN D+  F  L   + +LG++ I+SFG+ 
Sbjct: 183 VVLNRDNDQFNFLDRTAQSLGVEHIHSFGQH 213


>gi|226313428|ref|YP_002773322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
 gi|226096376|dbj|BAH44818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacillus brevis NBRC 100599]
          Length = 492

 Score =  148 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 76/466 (16%), Positives = 144/466 (30%), Gaps = 51/466 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       + G++ DSR + P   F  + G   DGH F   AV+ GA  V+   D+    
Sbjct: 15  VSGDDSMEITGLTADSRQVKPGYLFVCLTGYTVDGHTFAAQAVKNGAVAVLSEQDL---- 70

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             +   +  V D   A+  LA         +  +I +TG+ GKTTT  ++   L    K 
Sbjct: 71  -DVPATIVKVPDTRRAMAMLADRIFGSPTKEVKVIGVTGTNGKTTTTHLIDKILRDQSKQ 129

Query: 137 YACIGSYNNHIG---------------VPLTLARMPV-DVDFGIFELGMSHLGEIRFLTH 180
              IG+ +  IG               +  +  RM   + D+ I E+  SH  E+  +  
Sbjct: 130 TGLIGTIHMRIGDVTEEVKNTTPDAIDLQRSFRRMCDVNTDYAIIEV-SSHALELGRVRG 188

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               H AV T +   HL     +E    A +      G             +  +     
Sbjct: 189 C-EIHTAVFTNLTQDHLDYHKTMENYRYAKSLLFSQLGNGYDTDRLKTAVLNADDEASEL 247

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              +    + ++G  + AD + ++ +  S+ +   V+    S  +    +G     N L 
Sbjct: 248 YATVTPARVITYGIDQPADVRAKQIEITSKGTSFTVESFAGSARLNLRLMGKFNVYNALA 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +       ++    +L       GR +                + ++         +
Sbjct: 308 AIAVTLAEGIPLEAIKASLEEVAGVNGRFEAVDAGQPFAVLVDYSHTPDS-------LEN 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
            L  +     G    ++G     G         +   ++        L+          A
Sbjct: 361 ALMTVKEFARGNVFCIVG----CGGDRDRTKRPIMAQIATKYADLTVLTSDNPRSEEPQA 416

Query: 414 LKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + D +                          S     DV+++  K 
Sbjct: 417 ILDDMLAGLSEVAPDRYTALTDRREAIAHAVSLAKPDDVILIAGKG 462


>gi|225009955|ref|ZP_03700427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
 gi|225005434|gb|EEG43384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Flavobacteria bacterium
           MS024-3C]
          Length = 487

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 148/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +    +       V G+  DSR +  Q  F A KG   +GH FI  A++KGA 
Sbjct: 4   LKDILYGVSIDQLQGSTLKEVQGVYFDSRKVVAQSLFVATKGVQVNGHIFIETAIEKGAT 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
           +VV     +  +    +    V +   AL  +A            +I +TG+ GKTT   
Sbjct: 64  VVVCED--LPGLTHAEVTYVVVPNSQEALGVMAANWFDHPSKKLSLIGVTGTNGKTTVTS 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FELGMS 170
           +L    +        I +    +G             + I                + +S
Sbjct: 122 LLYALFTKAGYPSGLISTIKILVGEKAYETAHTTPDVWTINAYLQEMVSEGLSHCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +    A+ T ++  HL            K  +F+GL  T    +N DD 
Sbjct: 182 SHGIAQMRIKGLTFEGAIFTNLSQDHLDYHKTFANYRDTKKLLFDGLSTTAFALVNSDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A       S+G    ADF+ +  +       +++  Q     ++     Y
Sbjct: 242 NGLFMLQNTKAKK----MSYGLKGVADFKAQILENQFSGQLLKIDQQEVWTTLLGQFNAY 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++         +           ++ L      E    R++  +++   T I + Y   P
Sbjct: 298 NILAIYATATLLGL-------NTLEVLQHISTLENVAGRFQYFISKNQITAIVD-YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   +  + QI    E     V       G         L   ++      V L+  +
Sbjct: 350 DALDNILETIGQIRTKNEKLITVV-----GCGGDRDQGKRPLMGAIAAEKSDTVILTSDN 404

Query: 411 VL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ + +           V   E                D++++  K 
Sbjct: 405 PRSETPIAILEQMEAGVSPVDIKKVLVVENRKQAIKTACMMATPKDIILIAGKG 458


>gi|229846164|ref|ZP_04466276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
 gi|229811168|gb|EEP46885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 7P49H1]
          Length = 488

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 151/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++     +PV     +   L+ LA           T++  TG
Sbjct: 54  HSGASAVVSETELSSEHLTVDFIGNVPVVKYHQLARHLSSLADVFYDSPSKNLTLVGATG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLATFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|218289895|ref|ZP_03494085.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240035|gb|EED07221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 498

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/467 (17%), Positives = 150/467 (32%), Gaps = 48/467 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V  I+ DSR + P   F A++G   DGH F   AV++GA  V+V   +    
Sbjct: 15  VTNAENPDVLNITTDSREVEPGSLFVAVRGHTVDGHRFAGQAVERGAVAVMVEEPVAD-- 72

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              SIP   V D       +A            +I +TG+ GKTT   ++   L S  + 
Sbjct: 73  VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132

Query: 137 YACIGSYNNHIG-----VPLTLARMPVDVD-----------FGIFELGMSHLGEIRFLTH 180
              IG+    +G     +P T                      + E+  S    +     
Sbjct: 133 AGLIGTVGAKLGSTSWSLPNTTPEAVEVHRLLRRFVDAGATHAVMEV--SSHALVERRAA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIFLNYDDSFFELLK 236
            V    A  T +   HL     +E  A+A     + +  G        +    +  +   
Sbjct: 191 GVSFACAAFTNLTQDHLDFHGTMERYAAAKALLFSRLGNGTGDDPARSVYAVINADDPWS 250

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                     I ++G  + AD + R  +  +  +   V     + E+    IG     N 
Sbjct: 251 PVMAEASAAPILTYGIERAADVRARDVRLSASGARFWVDSPAGAFEIETPLIGRFNVYNT 310

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + I  +         + +  +    GR +R         F      Y   P  ++  
Sbjct: 311 LAAVAIALVEGLAASEIQEGIRSYPSVPGRMERIDEGQPFSVFVD----YAHTPDGLENV 366

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVL 412
           ++ + + +P        VL  +   G+  ++    +AEV        ++ S        +
Sbjct: 367 LASVREFAPAR------VLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPV 420

Query: 413 ALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           A+   +   +   Y+                 +    GDVVV+  K 
Sbjct: 421 AILAEMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467


>gi|224542667|ref|ZP_03683206.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524377|gb|EEF93482.1| hypothetical protein CATMIT_01851 [Catenibacterium mitsuokai DSM
           15897]
          Length = 489

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 146/474 (30%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL   +   IG      +  +  DSR +     F  + G  ++ HDFI   ++KG
Sbjct: 1   MKLEKLLNGFEYEIIGNK-DVDITTLVYDSRKVEEGSLFVCMVGAAFNAHDFIDQVIEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +V++ D+    G   +    V D   AL  L+ A       +  ++ ITG+ GKT++
Sbjct: 60  AHAIVISQDVSLKEG---MTYIRVKDTRIALALLSCAYFNYPSKELKVVGITGTKGKTSS 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL--------------TLARMPVDVDFGIFELG 168
             M+   L    K    IG+    IG                  + R  V+ D     + 
Sbjct: 117 SLMIKSILEHAGKKVGIIGTNGTFIGDIHEPTANTTPESYELQRIMRKMVEHDCEYCVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S           +     V T I+P H+             AE     +          
Sbjct: 177 VSSQALKMNRVAGIEFDYGVFTNISPDHIGP-----NEHKDFAEYMACKKHLFDFCQVGL 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        + ++   K++D +    +  +E   + +    K +       
Sbjct: 232 FNKDDEHFEEFTKDVPCKVLTYSIEKDSDLKALHIELYNENGELGITFDTKGLINASFKA 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L  + I            +        G+     ++  +  LID ++N 
Sbjct: 292 SMPGKFNAYNALVAIMICYLIDVPTKDIQNTLPQVHVLGRGQVMHVSPDYSVLIDYAHNG 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
                  +      +  +   + I V G     G+ S++   +  EV++ +    +  + 
Sbjct: 352 VSFESIIST-----VEQYNPNKLIVVYGS---GGKRSKTRRYESGEVVAKHGGYSILTAD 403

Query: 408 ---GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              G  ++ +   +                              GDVV++  K 
Sbjct: 404 NPRGEKIVDICKDIVVGIDKYHGEYTIIPDRKEAIYHALDMACKGDVVLLLGKG 457


>gi|16273059|ref|NP_439291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae Rd KW20]
 gi|260580217|ref|ZP_05848047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
 gi|1171073|sp|P45060|MURE_HAEIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1574688|gb|AAC22788.1| UDP-N-acetylmuramyl-tripeptide synthetase (murE) [Haemophilus
           influenzae Rd KW20]
 gi|260093501|gb|EEW77434.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus influenzae
           RdAW]
          Length = 488

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/483 (15%), Positives = 153/483 (31%), Gaps = 57/483 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             GA  VV  T++ +   ++    ++PV     +   L+ LA           T++ +TG
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIGNVPVVKYYQLAHHLSSLADVFYDSPSNNLTLVGVTG 113

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------ 169
           + GKTT  ++L      +    A +G+  N  G+   +          +           
Sbjct: 114 TNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEIQSSLSAFKH 171

Query: 170 ----------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+ 
Sbjct: 172 AGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDT 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D+  ++ L     A+ +     F    +   +        + + +  +    
Sbjct: 232 QIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    IG     N+L+ +  +      ++  +          GR +  +        
Sbjct: 292 NGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPTVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A   ++ AA         H +G    + G     G         L   ++  
Sbjct: 352 VDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQ 400

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               + ++  +            +         V           F   S V+ DV+++ 
Sbjct: 401 FAEKIIVTKDNPRTESQSQIETDIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIA 460

Query: 450 -KS 451
            K 
Sbjct: 461 GKG 463


>gi|258511257|ref|YP_003184691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477983|gb|ACV58302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 498

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 149/465 (32%), Gaps = 44/465 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V  I+ DSR + P   F A++G   DGH F   AV++GA  V+V   +    
Sbjct: 15  VTNAENPDVVNITTDSRDVEPGSLFVAVRGHTVDGHRFARQAVERGAVAVMVEEPVAE-- 72

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              SIP   V D       +A            +I +TG+ GKTT   ++   L S  + 
Sbjct: 73  VPASIPQVVVPDTRHWSALVADRLFGSPSRELRVIGVTGTNGKTTVTHIVRHLLDSTGRK 132

Query: 137 YACIGSYNNHIG-----VPLTLARMPVDVDFGIFE---------LGMSHLGEIRFLTHLV 182
              IG+    +G     +P T         +             + +S    +      V
Sbjct: 133 AGLIGTVGAKLGQASWPLPNTTPEAVEVHRWLRRFVDAGATHAVMEVSSHALVERRAAGV 192

Query: 183 RPHIAVITTIAPAHLSNFSGIE----EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               A  T +   HL     +E      A   + +  G        +    +  +   + 
Sbjct: 193 SFACAAFTNLTQDHLDFHGTMERYAGAKALLFSRLGNGTGDDPARSVYAVINVDDPWSSV 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   I ++G  +  D + R  +  +  +   V     + E+    IG     N L 
Sbjct: 253 MAEASAAPILTYGIERAGDVRARDVRLSASGARFFVDSPAGAFEIETPLIGRFNVYNTLA 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I  +         + +  +    GR            F++  + Y   P  ++  ++
Sbjct: 313 AVAIALVEGLTPTEIQEGIRSYPSVPGR---MERIDEGQPFSVFVD-YAHTPDGLENVLA 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
            + + +P        VL  +   G+  ++    +AEV        ++ S        +A+
Sbjct: 369 SVREFAPAR------VLVVVGCGGDRDRTKRPKMAEVAVRLADRAIFTSDNPRSEDPVAI 422

Query: 415 KDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +   Y+                 +    GDVVV+  K 
Sbjct: 423 LADMRGGVEPAYAHKVREEVDRRRAIEMAIAEAEPGDVVVIAGKG 467


>gi|228985702|ref|ZP_04145855.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228774097|gb|EEM22510.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 499

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 156/483 (32%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   LS        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL      +E    K+      G + + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKHVKSLLFARLGNDLST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 241 IDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EVNLNLVGRFNVYNALAAITVAMVEGIPLTNICDSLSNLKSIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++       +++       +       +     D+V++ 
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|309388988|gb|ADO76868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halanaerobium praevalens DSM 2228]
          Length = 486

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 155/476 (32%), Gaps = 48/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            + +L+ I         +  ++ I  DSR+I     F AI G   DGH +I  A++ GA 
Sbjct: 3   LNKILKNINYEIKAGNIKKEISEIKYDSRAIKTGNLFIAISGFKIDGHQYISQAIENGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +++  ++   +    I    V++    ++ LA         +  +I ITG+ GKTTT  
Sbjct: 63  AIIIEKEL--EVYEKDITYLKVENSRQVMSILAKNFFDNPLKEIKLIGITGTNGKTTTAY 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           +L   L       A  G+ +N IG                           + +G+ E+ 
Sbjct: 121 LLYKILQKYAGQAALFGTISNIIGSETLSSNRTTPESLDLYRYFAQMKKKGIKYGVMEV- 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S      +    +    A+ T ++P HL     ++     K+ +F  L+      +N D
Sbjct: 180 -SSHALDLYRVESIDFEAAIFTNLSPEHLDYHQSLDNYREVKSRLFSQLKPNKYAIINAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +K KS A  +        +K+AD    ++K        +   +        +  
Sbjct: 239 DPNSEYIKKKSEAQNL---SYSLDTKSADLYTTEFKLKQTGLEYKTGGK-LVANFKLNLG 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +    +L  + +   KAL+ F    GR +                    
Sbjct: 295 GLFNIYNSLAVVLTALVLGIEKNIIKKALADFDSVPGRFEIIDQGQKFQLIVDYA----- 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  A+  + + + + +  ++ +L      G         L   L+      + +S 
Sbjct: 350 ---HTPDAMENILKAALNIKKNKLIIL---FGCGGDRDRSKRPLMAALAEKYADSIIISN 403

Query: 409 FH---------VLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +            ++     +  +                     D+V++     
Sbjct: 404 DNPRSESPTKIFKEIEKGFSSNFTNYSIIPDRKKGIKAAIELAKKDDLVLLLG-RG 458


>gi|114763024|ref|ZP_01442454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelagibaca bermudensis HTCC2601]
 gi|114544348|gb|EAU47356.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. HTCC2601]
          Length = 494

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 158/469 (33%), Gaps = 38/469 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL     G +        V GIS+DSR++ P   F A+ G    G  FI  A+ +GA
Sbjct: 7   SLSDL-----GLTARGGRDARVTGISVDSRAVMPGHLFAAMPGTKVHGATFIDTALAQGA 61

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+ + +      +      + +    +   AL            AT++A+TG+ GKT+
Sbjct: 62  VAVLTDAEGARLAEAALAESDVALVIAAEPRAALAYACALFFGAQPATMVAVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE---LG 168
               +      +                     +    P+TL +   +      E   + 
Sbjct: 122 VASFVRRLWQELGYRAVNLGTTGVEGDWQAPLRHTTPEPITLHKALAEAASAGVEHAAME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V+   A  T     HL   +  EE  +AKA +F  +       +   
Sbjct: 182 ASSHGLDQRRLDGVQLVAAGFTNFTQDHLDYHADFEEYFAAKAGLFARVLPEEGTAVVNI 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    +          + + + G+S+ AD +L   +  +    + +   G   ++  + I
Sbjct: 242 DDARGIDMLAIARARGQEVLTVGESEGADLRLLGQRFDATGQELRLSWHGVVEQLRLNLI 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    QN L+  G+V    A+ +   +AL       GR +      + G    +D ++  
Sbjct: 302 GGFQGQNALVAAGLVIACGAEAEDVFRALPRLETVHGRMQLAATR-DSGAAVYVDYAHTP 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  +       +  + PH  GR IA++G     G    +    L    +  N   V ++ 
Sbjct: 361 DAVAT-----AIKALRPHVMGRLIAIVGA----GGDRDAGKRPLMGRAAAENADLVIVTD 411

Query: 409 FH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +             L  +             L     L  GD ++V  
Sbjct: 412 DNPRSEDPAAIRAQVLEGAPEATEVGDRAEAILRGVDLLQPGDALLVCG 460


>gi|288574846|ref|ZP_06393203.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570587|gb|EFC92144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 499

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 146/461 (31%), Gaps = 42/461 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +G +    ++ I  DSR +     F  + G H DGH F + AV+ GA  ++     +  
Sbjct: 20  IVGQLSDEIISSIEFDSRKVTSGSLFCCVPGLHNDGHKFAVAAVKSGAAALLCEH--IPD 77

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +P+    D   AL  +A +         +++ +TG+ GK+TT  M+   +    K
Sbjct: 78  GVKKDVPIILSSDARSALGAIASSFHDHPSESLSMVGVTGTNGKSTTTYMIRSIMRGRGK 137

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLV 182
                    +     +   R   +                    +  S  G  +      
Sbjct: 138 VGLLGTITYDDGTKEIEADRTTPEGSEIQAFLSEMVRSSCNGCVMETSSHGLAQGRLSGC 197

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
              +AV T + P HL     +E     K     + ++       N DD + + L  +   
Sbjct: 198 LFDVAVFTNLTPEHLDFHGDMERYFETKKLLFTQYMKYNCKKIFNVDDPYGKRLLREC-- 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G   +    KS +A              + ++ ++G+   V    IG +   N L    
Sbjct: 256 SGSDVVTYSSKSSSATVTGSNISLDVGGLFFDLAIEGRVNRVRLPLIGRYNVSNALAAAA 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +    D   + L       GR +RY              + +A         ++LS
Sbjct: 316 ACHSIGFSYDEIQRGLENMPQVPGRMERYLFKKRGCAIVDYAHTPDA-------LSNLLS 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
                 +GR I V G    +G      +      ++     H+ L+     G   L++ +
Sbjct: 369 AAREICKGRLIGVFG----LGGERFRGNRWAMGEIAAQKADHLVLTMDNPRGEDPLSIVE 424

Query: 417 ALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +   +H                         +GDVVV+  
Sbjct: 425 DILEGVHKVDGNSYDVIIDRKDAIYRALDMSREGDVVVISG 465


>gi|239832314|ref|ZP_04680643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
 gi|239824581|gb|EEQ96149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum intermedium
           LMG 3301]
          Length = 490

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 149/476 (31%), Gaps = 44/476 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++    +  + G   +  + G++ DSR +     F A+KG   DG  F+  A
Sbjct: 1   MT--MKLKEIA-LFKELASGNAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +V   D V  I    +PV  VDD   AL   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGASAIVAGKDTV--IADAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFE-- 166
           +         +      A IG+             +                D G+    
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     V+      T +   H+   + IEE   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+       +   +   E+    V+++         
Sbjct: 236 FSDDHFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGDEIFEIE 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  Q     +     +   V  A    ++   K   G+       +       +  
Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL+ + P   GR I V G     G         +   ++        +
Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVAIV 404

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +  A P +  +              S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAAPGATEI---GDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|72383583|ref|YP_292938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
 gi|123621501|sp|Q46LZ6|MURE_PROMT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|72003433|gb|AAZ59235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL2A]
          Length = 509

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/484 (16%), Positives = 156/484 (32%), Gaps = 49/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+AI       +    +  +S DSR I   + F  + G   DG +F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGNFWAKAIERGAC 64

Query: 67  LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
             +++    ++    +    V   + V   + KLA     +  + I  I ITG+ GKTTT
Sbjct: 65  AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
             ++    +S+    A  G+  N    P           F +                  
Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRW--PNHEETSKYTTTFAVPLQAKLRKAVQAGVEYGA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTI 223
           + +S     +        + AV T ++  HL     +E    AKA +F            
Sbjct: 183 MEVSSHALSQNRVAGCDFNGAVFTNLSRDHLDYHDSMESYFEAKASLFRSHLIEDGGPRS 242

Query: 224 FLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD +   L  + +          +    + AD  +   +   +    ++       
Sbjct: 243 VINIDDKWGAKLAKELNKKCWTCSLKENSQTREKADLYISNLQIMQDGYKGKLHTPFGVE 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGF 338
             +   IG     NML  +GI+      ++  + AL+ F    GR +        + +G+
Sbjct: 303 NFISPLIGEFNLMNMLQAVGILVQRGLPLNDLLAALNKFPGVPGRMQLINMDGFKVKEGY 362

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +  +          + L       + R I V G     G             ++ 
Sbjct: 363 PLVIVDYAHTPDG----LQNALIASRSLTKRRLICVFG----CGGDRDKGKRSKMGEVAA 414

Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ ++  +         +  +   +     +              +     DVV++
Sbjct: 415 KFADYIVVTSDNPRQEDPIEIIKDIGKGITIDSEISVEPERSIAIQLAIAKAKKNDVVLI 474

Query: 450 --KS 451
             K 
Sbjct: 475 AGKG 478


>gi|325269663|ref|ZP_08136276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
 gi|324988031|gb|EGC20001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella multiformis DSM 16608]
          Length = 520

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 152/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ ++  +I       + G++IDSR I     F A++G   DGH FI  AV +G
Sbjct: 37  MKLSELLRNVKPIAIHGNADVEIKGVNIDSRRIEDGHLFVAMRGTQVDGHRFIGKAVAQG 96

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V++    + ++    +    V        K+A            ++ +TG+ GKTT 
Sbjct: 97  AVAVLLED--MPAVMDEKVTYVQVASTEEDAGKVATVFYGNPSRRLKLVGVTGTNGKTTV 154

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y +   VP                  VD       + 
Sbjct: 155 ATLLYNMFRKFGYKTGLLSTVCNYIDDKEVPADHTTPDPIELNCLLSRMVDAGCEYAFME 214

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     + T +   HL      E   +AK   F+GL K      N D
Sbjct: 215 CSSHAIHQRRISGLEFAGGIFTNLTRDHLDYHKTFENYRNAKKMFFDGLPKNAFALTNAD 274

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A       ++   + ADF+ +  +   E     + L+ +  EV    I
Sbjct: 275 DKNGLFMVQNTKAAVK----TYSIKRMADFRAKILECHFEG----MYLEIEGKEVGVQFI 326

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  + A+S      GR +  +              Y  
Sbjct: 327 GKFNVSNLLAVYGAAILLGRQPEEILVAMSTLKSVNGRLEPIQSPEGFTAVVD----YAH 382

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   ++ +  +     G  I V G     G         L    ++     V L+ 
Sbjct: 383 TPDALANVLAAIHDVLDTKGGHVITVCGA----GGHRDKGKRPLMAQEAVKQSDTVILTS 438

Query: 408 ----GFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D         +   V                   GDV++V  K 
Sbjct: 439 DNPRDEDPQAIIDDMLSGLDAAQRKKVLTIVDRKEAIRTAAMMAKKGDVILVAGKG 494


>gi|297583945|ref|YP_003699725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
 gi|297142402|gb|ADH99159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           selenitireducens MLS10]
          Length = 489

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 151/477 (31%), Gaps = 46/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL  I    +       +  + +DSR ++    FF I+G   DGHD+   A  +
Sbjct: 1   MMKIRELLDHISPCRVKGDLDQDIKSLEMDSRLVSEGALFFCIRGFTVDGHDYAAQAADR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA   +   ++      +      V D   A+ +LA           T+I +TG+ GKT+
Sbjct: 61  GAVAFLTEEEL-----PVDGTQLIVRDSRRAMAQLAARFYNYPSDRMTMIGVTGTNGKTS 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166
               +   L         IG+                     +   L  M +     +  
Sbjct: 116 VTHFIQDLLKRAGTEAGMIGTMYTELKGIQTETVNTTPESFTLQKRLNEMYLAGAEAVTM 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIF 224
              SH   +  +       +AV T ++  HL     +++ A AK+      G       +
Sbjct: 176 EVSSHALHLGRVHGTA-FDVAVFTNLSQDHLDYHQTMDQYAQAKSLLFSQLGSGGETDAY 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +             + ++G  K  D +    +   E     ++L  +S  V 
Sbjct: 235 KRAVINVDDSYADIMLGASAVPVITYGIEKPCDVRAEDLEVSPEGIRFTIRLNQQSYPVQ 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L     V  +  + + A  A  +    + RG+  R   +  F  ++D 
Sbjct: 295 LKLAGTFSVYNALAAFAAVYAIGIEPEQA--ARFLSELPQVRGRFERVETDAPFHVIVDY 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++  +        +V+       +     V G     G         L   L+     HV
Sbjct: 353 AHTPDGLE-----NVIRTAKETTDRPVTVVFG----CGGDRDRKKRPLMGKLAEDLADHV 403

Query: 405 WLSGFHVLA------LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +  +      ++D L      +                +  +G+V+V+  K 
Sbjct: 404 ILTSDNPRSENPEAIIQDILSGMSKDNHTVQTDRKAAITHAIMNATEGEVIVIAGKG 460


>gi|326791419|ref|YP_004309240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326542183|gb|ADZ84042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 483

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 149/474 (31%), Gaps = 51/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGA 65
              LL  +    +       V+ +  DSR I      F AI+G   DGH FI  A+  GA
Sbjct: 3   LSKLLTGLNYVCVKGNEHQEVDHMIYDSR-IKTNAGLFIAIEGFKTDGHQFIEAAIANGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTK 123
             ++V  D+        + +  V+D   A+  +A  A         ++ +TG+ GKT+  
Sbjct: 62  KAILVQKDVEIKE---DVTIIKVEDTRLAMALVANNAYGHPSKQFELVGVTGTNGKTSIT 118

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169
            +L   L +  K    IG+  N IG                  L +  V+       + +
Sbjct: 119 FLLGQILEAYHKKIGIIGTIENRIGSQILKAERTTPESLDLQALFKKMVESQVDTTLMEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S               + + T +   HL     +E  A+AKA++        T+      
Sbjct: 179 SSHALALSRVAGSDFKVGIFTNLTQDHLDFHQTMENYAAAKAKL-------FTMCETGIV 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +       +        + ++   K+AD++       +      +     + +V     G
Sbjct: 232 NKDSDYINEIIKGATCNLVTYAIDKDADYKATNVIITAAGVEYTLVCDQGTFKVDVPIPG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  +     L   +   +  L +     GR + ++             + +  
Sbjct: 292 KFTVYNTLAVIAAARALEIPMTHILATLKIAKGVPGRVQAFKSIKGYSVLVDYAHTPDG- 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   +VLS I    +G  I V G     G         +   ++     HV+++  
Sbjct: 351 ------LENVLSTIKEFAQGHIITVFG----CGGDRDKTKRPIMGKIAATYSDHVFITSD 400

Query: 410 HVL-----ALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        + D +   +          E          S     DVV++  K 
Sbjct: 401 NPRTEDPLLILDEVEVGVKAITDNYVKVEDRKAAIEMALSEAKAEDVVLIAGKG 454


>gi|124025177|ref|YP_001014293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. NATL1A]
 gi|166224783|sp|A2C0L8|MURE_PROM1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123960245|gb|ABM75028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. NATL1A]
          Length = 509

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 158/484 (32%), Gaps = 49/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+AI       +    +  +S DSR I   + F  + G   DG  F   A+++GA 
Sbjct: 5   LHTLLKAIDLQVRSGLANPEIKNLSTDSREIEKGDLFLGLDGEKVDGGTFWAKAIERGAC 64

Query: 67  LVVVNTD--MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
             +++    ++    +    V   + V   + KLA     +  + I  I ITG+ GKTTT
Sbjct: 65  AAIISKKASLLNPPTNEDPVVILPEPVSLFMGKLAADFWGKPSSEICLIGITGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
             ++    +S+    A  G+  N    P           F +                  
Sbjct: 125 SFLIEFLTTSLGHPSALFGTLINRW--PNYEETSKYTTTFAVPLQAKLRKAVQAGVEYGA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
           + +S     +        + A+ T ++  HL     +E    AKA +F      +     
Sbjct: 183 MEVSSHALSQNRVAGCDFNGAIFTNLSRDHLDYHDSMESYFEAKASLFRSHLIDDDGPRS 242

Query: 224 FLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD +  +L  + +          +    +  D  +   +   +    ++       
Sbjct: 243 VINIDDKWGSILAKELNKKCWTCSLKENSQIREKPDLYISNLQIMQDGYMGKLHTPFGVG 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGF 338
             +   IG     NML  +GI+      ++  ++AL+ F    GR +        +  G+
Sbjct: 303 NFISPLIGEFNLMNMLQAIGILVQRGLPLNDLLEALNKFPGVPGRMQLINMDGFKVKDGY 362

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +  +          + L       + R I V G     G             ++ 
Sbjct: 363 PLVIVDYAHTPDG----LQNALIASRSLTKKRLICVFG----CGGDRDKGKRSKMGEVAA 414

Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ ++  +         +  ++  +     +           F  +     DVV++
Sbjct: 415 KFADYIVVTSDNPRQEDPIEIIKDIQKGITIDSEISVEPERSIAIQFAIAKAKKNDVVLI 474

Query: 450 --KS 451
             K 
Sbjct: 475 AGKG 478


>gi|78044715|ref|YP_360893.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996830|gb|ABB15729.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 492

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 157/479 (32%), Gaps = 48/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +L++ ++           +  V GI  DSR + P   F AIKG   DGHDFI   +
Sbjct: 1   MKIAELVEILKTIITKNGINWAELEVTGIEQDSRQVKPGNIFVAIKGFTADGHDFIEKVI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           +K   L+V   +     G   +    V D   AL  LA         K ++I +TG+ GK
Sbjct: 61  EKKPALIVAEEERP---GIFGVNHLLVKDSRQALALLARTFYGNPTEKISVIGVTGTNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE---- 166
           TT   ++T  L S       IG+  N IG          P  L+   +  +    E    
Sbjct: 118 TTVTHLVTSLLESFGYKTGLIGTIYNRIGDKILPVTNTTPDALSLQRLFAEMVKSEVSHV 177

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S    ++     +     V T +   HL     +E   +AK E+F+         L
Sbjct: 178 AMEVSSHALVQKRVLGIDFKTGVFTNLTQDHLDFHESMENYFNAKKELFK--ILAEQKAL 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +    +          ++G  + AD   +  +  +  +   +  Q +   V  
Sbjct: 236 PGVINKDDFYGQRILKEVAHPFVTYGIKEQADITAKNVELTNSGTAFTLCYQEEEYPVKV 295

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  +G +  L   +   +K L + +P  GR +      +         +
Sbjct: 296 KLLGLFNVYNILAAVGTLLTLGFSLPDIVKNLPLLNPVPGRFELIDEGQDFAVIVDYAHT 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          ++L        GR IAV G     G             +S        
Sbjct: 356 PDG-------LENILKSARAITPGRVIAVFG----CGGDRDKTKRPKMGKISATLADITI 404

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            ++     ++   Y +                 GD VV+  K 
Sbjct: 405 ITSDNPRTEDPEAIINEIEKGFFDALPGKYLKEVDRKKAIKTALLLAKPGDTVVIAGKG 463


>gi|182417965|ref|ZP_02949274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237667171|ref|ZP_04527155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378136|gb|EDT75671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum 5521]
 gi|237655519|gb|EEP53075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 486

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 162/474 (34%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L  +    +       +N I+ DSR +   + F  +KG   DGH +   AV  G
Sbjct: 1   MNLKSILNGLDYELLQGTEDVQINKINYDSRKVCKDDLFVCVKGYATDGHKYAEKAVLNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V+  D+  +I    I +    D   AL  +          K  II ITG+ GKTTT
Sbjct: 61  AKVIVIQDDV--NIDDKEITIVKCSDTRKALALMGANYYGNPSEKMKIIGITGTNGKTTT 118

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPL-------TLARMPVDVDFGIFE 166
             M+   L               Y C    +     P            +   V++ + E
Sbjct: 119 AFMIKDILECAGKKVGLIGTIANYICGEKIHTERTTPESLELQELFGEMVEKGVEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S         + V+    + T +   HL      E    AK ++F   E++    +N
Sbjct: 179 V--SSHSLALDRVYGVKFECGIFTNLTRDHLDFHKTFENYYDAKFKLF---ERSCIKVIN 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++   +      L  + IYSF    ++D++    +    +      +  +  E +  
Sbjct: 234 VDDNYGIQVLKDCQKLNAENIYSFSVKSDSDYKAYD-ELMGSRDIKFKVVLDEEEEFILG 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  +G+   +   ++   + +       GR +R     N  +  +ID ++
Sbjct: 293 IPGEYNIYNALGAIGVCHKMGIAIEAIKEGIENAL-VPGRCERVGKEYNLPYEIIIDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +        ++L       +G+ IA+ G     G+  +     + ++        V  
Sbjct: 352 TPDGLE-----NILKTAKAFTKGKLIAIFG---CGGDRDKVKRPQMGKIGIDIADLAVIT 403

Query: 407 SG----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S        +A+ + +       +    E                DV+V+  K 
Sbjct: 404 SDNPRSEDPMAIIEDIKAGLDKDNYIIIENRHDAIKKAIELAEKDDVIVIAGKG 457


>gi|222528779|ref|YP_002572661.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455626|gb|ACM59888.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 486

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 152/460 (33%), Gaps = 49/460 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 +  I+ +S++      F  IKG   DGH++I  A+Q GA LVVV+     S   
Sbjct: 18  GDFDKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQNGACLVVVDEFFDTSKIE 77

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             I      +   AL  ++            +I +TG+ GKT+T  M+   L +  +   
Sbjct: 78  GKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTSTTFMIKSILEAHGQKVG 137

Query: 139 CIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            IG+  N IG               +     +M  +    +  + +S      F  +   
Sbjct: 138 LIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKSEGVDSVV-MEVSSHSLELFRVYDCD 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + V T +   HL     +E   +AK ++F     +    +N DD + + +        
Sbjct: 197 FDVGVFTNLTQDHLDFHGTMENYFAAKLKLF---GMSKKRVVNADDMWGKRIIEMYPDS- 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                ++ K  +A    R  K    ++  E+   G+  E+  +  G     N L      
Sbjct: 253 ----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLNIPGVFSIYNSLAASACC 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D   K L       GR +                + +         ++++  +
Sbjct: 309 ISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTPDG-------LLNLMKTV 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           +   +GR++ + G     G         +   ++      V ++  +            +
Sbjct: 362 NEVTDGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIVTSDNPRTEDPLKIIADI 417

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + + + ++             +   +  + D +V+  K 
Sbjct: 418 LEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|56964125|ref|YP_175856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
 gi|56910368|dbj|BAD64895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus clausii KSM-K16]
          Length = 485

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 160/478 (33%), Gaps = 57/478 (11%)

Query: 8   HDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           ++LL+ ++G            +  + +DSR +     FF I G   DGHDF   AV+KGA
Sbjct: 2   NELLRVLRGITPLKKEHQSIEIAHLEMDSRLVKQGTLFFCINGYTVDGHDFAKQAVEKGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             VV    +     +L +PV  V D   A+ +LA         +  +I +TG+ GKT+  
Sbjct: 62  VAVVAERPL-----ALDVPVVIVRDTKRAMARLASHFYGEPTKRLQLIGVTGTNGKTSVT 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFEL 167
            +L        +    IG+    IG      R                +   V+  + E+
Sbjct: 117 HILDTMFREAGQKTGLIGTLYTKIGDETIETRNTTPESLVLQQRFASMVNKQVETAVMEV 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224
               L   R         IAV T + P H+     +E    AK              T  
Sbjct: 177 SSHALHLGRVRGCDYD--IAVFTNLTPDHIDYHETMERYLYAKSLLFSQLGNTYDGKTAV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD   + L   + A  +    ++G  K AD      K  +  +   + + G+  +V 
Sbjct: 235 INSDDPASDRLIQMTTADVV----TYGIKKQADVYGENIKVSAAGTRFTLHVFGEKTDVQ 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N L       +    + T   +L       GR   +        FT+I +
Sbjct: 291 LKLIGLFNVYNALAAAASAYVSGLSLSTIKASLEKVTGVAGR---FEPVDEGQDFTVIVD 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +  +   +   +     V+G     G    +    +   +++      
Sbjct: 348 -YAHTPDSLENVLQTVQDFA---DNDIHVVVG----CGGDRDATKRPVMGRIAVQYADRT 399

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            + + L    +               ++   GD+VV+  K 
Sbjct: 400 IFTSDNPRTEDPDAILADITEGLDPDQYTVIV-DRKTAIEQAIAAANTGDIVVIAGKG 456


>gi|327441257|dbj|BAK17622.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 489

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 154/472 (32%), Gaps = 41/472 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  +    +       +  I+IDSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 3   AEELLSTLMQKKVVGQLPKLITDIAIDSRSVQPNSLFICIKGFTVDGHDYAQKAVDAGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
           ++V             I    V +    L  LA          I  I +TG+ GKT+   
Sbjct: 63  VIVTER---LLQLDGEIAQVIVKNTTRTLGILAAKFFDYPSKDIMMIGVTGTNGKTSVSG 119

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFE----------LGMS 170
           ++   L  + +  A       N  GV    A    D       IF           + +S
Sbjct: 120 IIHNILIGLGEKSALSGTIGFNLNGVLYESANTTSDSLNTQQMIFRAKSEGCRAMVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G        V   +AV T +   HL     +E   + K  +F  L +      +   +
Sbjct: 180 SHGLALGRLAGVDYDVAVFTNLTHDHLDFHGTMENYGNTKGLLFSQLGQDLEKNKHVVLN 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +    +   +    I+++G   NA F+       +  +  +++    +  V  H +G 
Sbjct: 240 ADDPWSERYAGMTPYPIWTYGLHNNAIFRAVNCNYDNGMTQFDMETPEGTFPVSMHLLGE 299

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L    +       ++  I+ + +  P +GR ++    L    F      Y   P
Sbjct: 300 FNIYNVLAATAVFYARGFPIEVIIEQIEMLPPVKGRMEKIDSDLPIQIFID----YAHTP 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++ AI+               V       G   ++    +AE  S+    +V L+   
Sbjct: 356 DAIEKAINAAMPYKKPENKLIFLVGTG----GGRDKTKRPTMAEKASVA--DYVILTTDD 409

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       L   + +  +               S    GD+++   K 
Sbjct: 410 PRYEEFDSITGDLAKGM-KHKNYACIGDRAEAVRHAVSVANPGDIIIFAGKG 460


>gi|189219426|ref|YP_001940067.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
 gi|189186284|gb|ACD83469.1| UDP-N-acetylmuramyl tripeptide synthase [Methylacidiphilum
           infernorum V4]
          Length = 504

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 93/478 (19%), Positives = 155/478 (32%), Gaps = 47/478 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A++   +       +  IS DSR ++    FFA KG   DGH +I  A++K A 
Sbjct: 14  LKNLLYALEPLEVVGSVDCEITSISYDSRKVSEGSMFFAWKGQKTDGHCYIGEAIEKRAR 73

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            +V + ++     S ++    V D    L K A           +++ +TG+ GKTTT  
Sbjct: 74  AIVCS-EIPRLYVSQAVTFLKVRDPRRTLGKAASLYYGNPSQHLSLVGVTGTNGKTTTSF 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168
           +    L         IG+                             +       + E+ 
Sbjct: 133 LTRYLLEKQNWKAGLIGTVCYDTTESCIPSSRTCPEGSDLQYMLYRMVQAGCRAAVVEV- 191

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS----AKAEIFEGLEKTGTIF 224
            SH  +           + + T     HL     +EE         A I  G E  G + 
Sbjct: 192 SSHALDQGR-IEGSNFRVGIYTNFTQDHLDYHLTMEEYRRSKENFIAYIRGGKEGDGGVV 250

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD  + LL  K          S    K AD +          +   ++  GK  +V 
Sbjct: 251 LNLDDPQWRLLAEKLRKKMRIVTVSSEGRKEADLKAGSISCDRFSTKFVLEWAGKVFKVK 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +GY    N L++LG V +L   ++ +I  L  F    GR ++Y              
Sbjct: 311 SSLLGYFNVDNALLSLGGVLLLGIPLEQSISFLEFFPGVPGRMEKYYSKDGLLVVIDYA- 369

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                  S  A   +L  +      R I V+G     G             ++  N   V
Sbjct: 370 ------HSEDALSKLLHTLKCFQPKRLILVVG----CGGDRDRLKRPRMAKVASENADIV 419

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +  +            ++  +  S  +H+    +             D+V +  K 
Sbjct: 420 FFTSDNPRSESPERIFDDMRAGVEESKKLHWIIDREEAIKQALCLADSTDIVCIAGKG 477


>gi|258516086|ref|YP_003192308.1| Mur ligase middle domain-containing protein [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779791|gb|ACV63685.1| Mur ligase middle domain protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 455

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 105/470 (22%), Positives = 190/470 (40%), Gaps = 21/470 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L    ++L  I+G  I    +  ++  +I    +     +F ++    D + F    
Sbjct: 1   MKNL-NLKEMLSIIEGKIIRGTDELLIDHAAIVPHKLKDNSLYFNMQDDPVDFNSF---- 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             K   +V+ +     ++ +    V  V+DV  A  +     R      ++A+TG+ GKT
Sbjct: 56  --KNCAMVINSEHY--NVENSKWTVVAVEDVEKAFWRFVKYYRNLFNIPVVAVTGTCGKT 111

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEM+   LS   KT A   S N        L  +    +  +FE  +++  ++     
Sbjct: 112 TTKEMIKHILSLHFKTAATYKSINGWRMHLPYLLEIDETTEAAVFETAVAYPEDLIESCR 171

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P I +IT I   HLS  S  +   +AKAE+ EGL   GT+ LN DD     +  + +
Sbjct: 172 YFKPDIGIITNIGVDHLSGCSTFDNYLNAKAEMMEGLGYRGTLILNADDKNISRIDLQPY 231

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I  FG SK + F+  +     +     ++ +    ++   G G H   N L  +
Sbjct: 232 KG---RIIYFGLSKKSHFRASEISLTDKGMQFSLEYKKLRYDIFVPGFGTHSIYNALAAI 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L   +  A   L+ +       +  +        T+ID+++++NP SM+AA+  L
Sbjct: 289 ACTHVLGLGIKEAALRLASYK---HLERHLQVVPGVNGSTIIDDTWSSNPTSMQAALKTL 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
             +S +      A+LGDM  +    +  H ++  +     +  +   G     +      
Sbjct: 346 QNLSGNKRK--AAILGDMFYLYSWEKELHREIGNLAVEIGLDILLTVGDAASEIARGALE 403

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               S ++      D  +  I   L D  +V+VK S    F  L+N ++ 
Sbjct: 404 KGMNSENIFICADADEAYQVICPLLDDNTIVLVKKSMKVSFNNLVNKIMN 453


>gi|51892344|ref|YP_075035.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
 gi|51856033|dbj|BAD40191.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Symbiobacterium thermophilum IAM 14863]
          Length = 497

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 140/470 (29%), Gaps = 50/470 (10%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +   P   +  +  DSR + P   F A+ G + DGHDF   AVQ+GA  +VV   + 
Sbjct: 10  GQLLQGDPAAEITDVVYDSRQVTPGALFVALPGRNVDGHDFAPEAVQRGAAALVVERPVA 69

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI 133
           A      + V   D    AL +LA            ++ +TG+ GKTTT  ++   L   
Sbjct: 70  A---PAHVAVIRTDSTRAALGRLAAEFWRHPSRRMRVVGVTGTNGKTTTTHLVKAVLERQ 126

Query: 134 KK-------TYACIGSYNNHIGVPLT---------LARMPVDVDFGIFELGMSHLGEIRF 177
                     +  +       G+                     + + E   S  G    
Sbjct: 127 GHVVGLTGTVHTLMPGERRPAGLTTPEASDLQRLFHQMAEAGCTYAVME--ASSQGLDMN 184

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               V   + + T +   HL           AKA++F  L + G           +   +
Sbjct: 185 RVDDVEFDLGIFTNLTQDHLDYHGTFGAYREAKAKLFRLLSRPGYKPRKAAVLNADDPAS 244

Query: 238 KSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           + +    +   Y++G   +A  +    +     + + +      + V    +G     N 
Sbjct: 245 EYYRSVTEVPVYTYGFRPDAMVRAADVELSPAGTRLRLCTPQGEVPVSLRLVGRFNVYNA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L            +D    AL       GR +  R     G F            S  + 
Sbjct: 305 LAAAAAGVAEGIALDVIRDALEAEEGVPGRLQPVRAGQPFGVFVDYA-------HSPDSL 357

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
            +VL        GR I V G     G         +   ++     H  ++  +  +   
Sbjct: 358 ENVLHTARGFTRGRLIVVFG----CGGDRDPTKRPVMGRIAGCLAHHTIVTSDNPRSEDP 413

Query: 414 ----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     L D L            +       +     DV+V+  K 
Sbjct: 414 VRIVQQIESGLVDGLLPGHTYEVVIDREEAIRRAVTMAEPDDVIVIAGKG 463


>gi|300774253|ref|ZP_07084120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758932|gb|EFK55761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 484

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 95/477 (19%), Positives = 171/477 (35%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L AI    +       V  +  DSR       F A++G H DGH F+  A+Q+
Sbjct: 1   MIKLKDILHAIPVQEVVGQLDVEVTSLCFDSRQANEGSLFVAVRGVHTDGHLFVEKAIQQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           G  L++V    + +  S  +    V D   AL   A            ++ +TG+ GKTT
Sbjct: 61  GCTLIMVEE--MPAEKSEGVTYMMVADTAYALGIAAGNFYGNPSRELKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFEL 167
              +L    +++      + +  N IG   +P T             R  VD       +
Sbjct: 119 IATLLFNLFTALGYHVGLLSTVQNQIGERIIPATHTTPDPVALNALLRDMVDEGCDYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +R    + + I   HL      +    AK + F+ L++      N 
Sbjct: 179 EVSSHAVVQQRIAGLRFAGGIFSNITHDHLDFHKTFDNYIKAKKKFFDDLDRFAFALTNG 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+    ++   + A       ++G    ADF+ +  +   +     + L  +  EV    
Sbjct: 239 DEKNGSVMLQNTFAHKK----TYGLKGVADFKAKIIESHFDG----MLLNIEGHEVWVKL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  +    + ALS     EGR +                 Y 
Sbjct: 291 VGEFNAYNILAVYGAAILLEQETVKVLTALSQITGAEGRFEAITSKNGVIGIVD----YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S ++ +    E + I VLG     G+  ++   ++AEV +  +   V ++
Sbjct: 347 HTPDAVANVLSTINNLR-KKEQQIITVLG---CGGDRDKTKRPEMAEVAAKMS-DKVIIT 401

Query: 408 GFHVL------ALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +KD        R  +V                   GD+V+V  K 
Sbjct: 402 SDNPRTEDPVQIIKDMEPGIPADRKKNVFSITDRKEAIRAACHLAQPGDIVLVAGKG 458


>gi|125973493|ref|YP_001037403.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|256003309|ref|ZP_05428300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281417694|ref|ZP_06248714.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|125713718|gb|ABN52210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium thermocellum ATCC 27405]
 gi|255992599|gb|EEU02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 2360]
 gi|281409096|gb|EFB39354.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           JW20]
 gi|316940270|gb|ADU74304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium thermocellum
           DSM 1313]
          Length = 485

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/476 (15%), Positives = 146/476 (30%), Gaps = 52/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL++ +    +       +  I+ DSR       F  I+G   DGH FI  A++ G
Sbjct: 1   MKLKDLVKGLNVLEVEGDMDVEIKDIAYDSRKAKAGSLFVCIEGFKVDGHKFIPQAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
               +V  D+          V  V D   AL  +A        +   ++ ITG+ GKTTT
Sbjct: 61  TRAFLVQKDVDV---PDDATVVRVKDTRYALASVADIFFGHPSSKFNLVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP---------------LTLARMPVDVDFGIFEL 167
             M+   L +  +    +G+  N IG                    + M       +  +
Sbjct: 118 TYMIKSILEAFGQKVGLVGTIANMIGHEVLPTDRTTPESYDLQELFSEMVQKNVNSVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S               I V T ++  HL      E   +AK ++         +    
Sbjct: 177 EVSSHALELHRVSCCEYEIGVFTNLSRDHLDFHKTFENYLNAKIKL-------FGMCKKG 229

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +       K        +Y+ G    AD +        +     V     + +V  + 
Sbjct: 230 LINIDNEFGPKVVDSARCEVYTMGIDNKADLRAVDIVHHPDSVDFTVVSPWFTGDVRVNI 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +G  +++    +   K L                  +  +T++ +  +
Sbjct: 290 PGKFSVYNALAAIGTCALMGVPFEYIKKGLEKVTVPGRA----EVLDIKKDYTVMIDYAH 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               S  +  ++L+ +  +  GR + V G     G         +   +S        ++
Sbjct: 346 ----SPDSLENILTTVKAYAPGRVVCVFG----CGGDRDKTKRPIMGRISGQLADFTIIT 397

Query: 408 GFH---------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +  +++ + +                +   +    D++++  K 
Sbjct: 398 SDNPRTEDPDAIIRDIEEGIKQTGGLYTTITDRREAIKYALMNAKPKDIILLAGKG 453


>gi|261419312|ref|YP_003252994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus sp. Y412MC61]
 gi|319766128|ref|YP_004131629.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
 gi|261375769|gb|ACX78512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC61]
 gi|317110994|gb|ADU93486.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp.
           Y412MC52]
          Length = 489

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 148/477 (31%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +AP   FF +KG   DGHDF   AV +G
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  LA A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++        K    IG+ +  +G               +       + E      + 
Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +      +    I ++G  + +D    + +  +      +     S  V   
Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L            ++T   AL+   P  GR +      N         + 
Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++         + L  +    +     V+G     G         L   +++        
Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDRSKRPLMAQVAVRYADVAIF 404

Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +   +   +             +    +      +GDVV++  K 
Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461


>gi|60679851|ref|YP_209995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|81317077|sp|Q5LIJ3|MURE_BACFN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|60491285|emb|CAH06033.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Bacteroides fragilis NCTC 9343]
          Length = 485

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 162/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K A        +   ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +R    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLRFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|253564348|ref|ZP_04841805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|251948124|gb|EES88406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_2_5]
 gi|301161371|emb|CBW20911.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimela
           te ligase [Bacteroides fragilis 638R]
          Length = 485

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 162/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K A        +   ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|319404515|emb|CBI78120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella rochalimae ATCC BAA-1498]
          Length = 484

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 156/486 (32%), Gaps = 57/486 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               + GIS DSR + P   F A+KG   DG  ++  A+Q+GA +++ + + V    +LS
Sbjct: 17  ASIEITGISADSRQVLPGYVFVALKGNQSDGKKYVNDAIQRGARVIITDNNFV--FENLS 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136
           IPV  V DV   L   A         T++A+TG+ GKT+    +      I         
Sbjct: 75  IPVIHVLDVRHKLAIAAARFYNSQPETVVAVTGTSGKTSVVSFVRQIWEYIGFCAASIGT 134

Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
               +        +  P  +    +  +    E         S  G  +     V    A
Sbjct: 135 VGVVSPKRHDIGSLTTPDPVMLQRLLCEIANDEGVTHAAFEASSHGLDQCRIDGVHLAAA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   H+     IE    AK  +F  L       L + D  +      +     + +
Sbjct: 195 AFTNLGRDHMDYHKSIEHYFHAKMRLFHTLLPQDAPALIFADDVYSQKVIDTVRQAHRQV 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G++      L + +    +  +E ++            G     N LM  G+     
Sbjct: 255 LTIGRTGKF-ITLNRVEHQRLKQCVECRMGNNIYTFDLPLAGDFQVTNALMAAGLAIATN 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D   ++L       GR +        G    +D ++            VL  + P  
Sbjct: 314 APPDMVFRSLEKLQGAPGRLELVGN-TEDGAPVYVDYAHKPEALE-----QVLLSVRPFT 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDAL 418
           +GR I V G     G         L   ++      + ++  +            +  A+
Sbjct: 368 QGRLILVFG----CGGDRDQGKRALMGKIAGNKADIMIVTDDNPRTEAPEKIRKDILQAV 423

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN-------------SCGFYRLINL 463
           P +I +           +    L  GD ++V  K  +             S    ++I  
Sbjct: 424 PEAIEI---ADRGQAIEYAVGLLKAGDTLIVAGKG-HENGQIIGQEIYPFSDRL-KVIAA 478

Query: 464 LLEEFP 469
           L E   
Sbjct: 479 LKERNK 484


>gi|325286921|ref|YP_004262711.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
 gi|324322375|gb|ADY29840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cellulophaga lytica DSM 7489]
          Length = 487

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 147/479 (30%), Gaps = 52/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   ++       VN I  DSR +   + F A+KG   DGH +I  A+  
Sbjct: 1   MKLLKDILYGVGIVAVNGTTDTMVNAICFDSRKVGLDDVFVAVKGTLVDGHSYIDTALNA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  ++  T  +       I    V +   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GANAIICET--MPVNLVNGITYVQVKNGNAALAIMASNFYGTPSKNLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
              +L          Y         I +     +        I                 
Sbjct: 119 ISSLLYQLFKKA--GYKVGLLSTIKIMIDDKEIKATHTTPDAITINKSLAEMNNAGVEFC 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G  +     +    A+ T ++  HL       E    K  +F+GL KT     
Sbjct: 177 FMEVSSHGIHQKRIEGLVFEGAIFTNLSHDHLDYHKTFAEYRDTKKLLFDGLPKTAWALT 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD    ++   + A       ++     ADF+ +  +       +++       +++ 
Sbjct: 237 NIDDKNGAVMLQNTKAKK----QTYALKTYADFRAQILENQFSGQLLKIDDNELWSKLIG 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               Y+M         +              L +    E    R++  ++    T I + 
Sbjct: 293 DFNAYNMLAIYATAQLLGLEKMEI-------LRLLSELENVDGRFQYYISGKNITAIVD- 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++K  ++ ++ +    E     V       G         +   ++    + V 
Sbjct: 345 YAHTPDALKNVLNTINALRTGNEDVITVV-----GCGGDRDKSKRPVMGHIASEMSTKVV 399

Query: 406 LSGFHVL-----ALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +        +   +   +       V   E  +             D++++  K 
Sbjct: 400 FTSDNPRTESPSEILKEVEAGVEAQNTRKVLTIENREQAIKTACQLAQPKDIILIAGKG 458


>gi|229196766|ref|ZP_04323508.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
 gi|228586674|gb|EEK44750.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus m1293]
          Length = 499

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 156/483 (32%), Gaps = 58/483 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I   + F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLIKETIGDMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVEGAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVDFG 163
           TTT  +L   LS                      +  N    P     + +    + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVNSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTG 221
           + E+    L   R      +  IAV T +   HL       E    K       G + + 
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFHEYKHVKGLLFARLGNDLST 240

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T       +  +        +    + ++G    AD Q +      +     V      +
Sbjct: 241 TEKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNINLSPKGIRFLVSSFNGEI 300

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+  + +G     N L  + +  +    +     +LS     EGR +      +      
Sbjct: 301 EISLNLVGRFNVYNALAAITVAIVEGIPLTNICDSLSNLKCIEGRMEIIDENQDFLVIVD 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A         +VLS IS   +G+ I V G     G    +    +   ++    
Sbjct: 361 YAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKRSIMGGIAGSYS 409

Query: 402 SHVWLSGFH---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
             V+++  +         +  ++       +++       +       +     D+V++ 
Sbjct: 410 DFVFITSDNPRSEDPQAIMKDIEKGFLQNNNLNYKVEVDRELAINHAINMASSNDIVLIA 469

Query: 450 -KS 451
            K 
Sbjct: 470 GKG 472


>gi|322384125|ref|ZP_08057843.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151205|gb|EFX44514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 495

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 141/482 (29%), Gaps = 55/482 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++    ++   I       V+G+ IDSR I   + F  I G   DGHDF   AV  GA 
Sbjct: 3   LNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            +VV   +      +++P   V +   A+   A            II +TG+ GKTTT  
Sbjct: 63  ALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTY 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           ++   L         +G+    IG                          D D+ + E+ 
Sbjct: 118 LIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIF 224
              L   R      R    V T +   HL     ++      A   + +     +     
Sbjct: 178 SHALDFGRVKGIPFR--SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQR 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +        L    + ++G  K  D +    +  +E +   +     +  + 
Sbjct: 236 SYAILNVDDEASETFQRLTSAEVITYGIEKECDVRASNIRITAEGTEFTLTTFEGTENIR 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +         ++   K+L+     +    R         + ++ +
Sbjct: 296 MKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAE---VDSVPGRMEVVSEGQDYLVLVD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +          + LS +    EG    V G     G         L   ++     H+
Sbjct: 353 YAHTPDG----LENALSTVKEFAEGHVYCVFG----CGGDRDRTKRPLMGKVTAKYSDHL 404

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           +++  +                + +A                           DVV++  
Sbjct: 405 FVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFELIVDRRLAIQKAIEVASPKDVVLIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|227824965|ref|ZP_03989797.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
 gi|226905464|gb|EEH91382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus sp. D21]
          Length = 496

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 164/479 (34%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  D++  I+G    G      +  ++IDSR+      F  + G H DGH +I  A   G
Sbjct: 4   TLQDVISHIKGCTVTGDPKNKIITDLTIDSRTAGKGSLFICLVGVHTDGHAYIEKAASLG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+V  D+    G   + +  V      + +LA         K  +I ITG+ GKTTT
Sbjct: 64  AEAVLVEKDVPPVPG---LVMIRVKSTQETMTELAPWFYDYPAQKMRMIGITGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFE 166
             +L   L++       IG+ N  IG  +                         D+ + E
Sbjct: 121 TNILRTLLTNTGHKVGLIGTINIMIGDEVEASHNTTPDVVDLQRTLCRMADAGCDYVVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S           +    A +T I   HL     +E    AKA +F  L +       
Sbjct: 181 V--SSHALALNRVAGIEYDTAALTNITQDHLDFHKTMENYREAKALLFTHLHEGRKKGKT 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +             + ++GK++  D    ++   ++   + +     +M++  H
Sbjct: 239 AIFNMDDASSPLIMNRVKTKVMTYGKARTNDVYPIRFHVGAKHMELSLHTPEGNMDLRLH 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N++  +          D  ++ L  F    GR   ++       FT+I + Y
Sbjct: 299 ITGEFNVYNVMTAVCAALAEGLKHDDIVRGLDNFAGVPGR---FQLIDAGQPFTVIVD-Y 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +    QI    +GR  AV G     G    +    +   L+L     + +
Sbjct: 355 AHTPDGLDNVLRTARQI---TKGRLWAVFG----CGGDRDAKKRPIMGKLALELADILVV 407

Query: 407 SGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +  ++      P+   ++          F  S     DV+++  K 
Sbjct: 408 TSDNPRSEDPDTIIRDIETGFSDNPQHKEIYTISDRREAIQFAISHARPEDVIMIAGKG 466


>gi|84501749|ref|ZP_00999921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
 gi|84390370|gb|EAQ02929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola batsensis HTCC2597]
          Length = 497

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 162/461 (35%), Gaps = 35/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        + GI++DSR +     F A+ G    G +FI +A+++GA  V+ + +  
Sbjct: 15  GLTAHGGRDVVITGIAVDSREVREGYLFAAMPGTRLHGAEFIQYALRQGARAVLTDAEGA 74

Query: 76  ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +   +D   AL   A     +    + A+TG+ GKT+    L     
Sbjct: 75  RIAERDLAESDAALVIAEDPRQALAGAAALWFQKQPRIVTAVTGTNGKTSVASFLRQIWM 134

Query: 132 ----------SIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFL 178
                     +     +      +    P+TL RM  +  + GI    +  S  G  +  
Sbjct: 135 LVGREAVNLGTTGVEGSYSAPLMHTTPEPITLHRMMAELAEAGITHAAMEASSHGLAQRR 194

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V   +   T +   HL     +EE   AKA +F  +       +   D    +  A+
Sbjct: 195 LDGVMLRVGAFTNLTQDHLDYHHDVEEYFHAKAGLFTRVLTPDAAAVINVDGLRGVDMAE 254

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     + + G  ++A+ ++   +  ++   M     G+  +V  + IG   A+N+L+
Sbjct: 255 VAADRGLDVLTVGSHEDAELRILGRRFDADSQTMRFSFDGEVHQVQLNLIGGFQAENVLV 314

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+  +   D D     L       GR +      N      +D ++  +  +      
Sbjct: 315 AAGMAILSGEDPDQVFTVLPALSTVHGRMELAARRTNGA-AVFVDYAHTPDAVAT----- 368

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            L  + PH  GR +AV+G     G         L    +  +   V+++          A
Sbjct: 369 ALKALRPHVLGRLVAVIGA----GGDRDRTKRPLMGEAAAAHADLVFVTDDNPRSEDPAA 424

Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ A+                 L    +L  GD +++  K 
Sbjct: 425 IRQAVLLGCPDATEVADRAEAILRAVDALAPGDALLIAGKG 465


>gi|163868718|ref|YP_001609930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
 gi|161018377|emb|CAK01935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella tribocorum CIP 105476]
          Length = 483

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 159/453 (35%), Gaps = 41/453 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GIS DSR + P   F A++G   DG  +I  A+++GA  +V +    A +  LS+
Sbjct: 18  SIEITGISADSRQVLPGYVFVAVQGKKGDGRHYINDAIKRGACAIVTD--CQAVLEDLSV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS- 142
           PV  V +V  +L   A         T++A+TG+ GKT+    +    + +    A IG+ 
Sbjct: 76  PVLRVLNVRHSLALAAARFYGFQPETVVAVTGTSGKTSVVSFIRQIWTHVGLCAASIGTV 135

Query: 143 -----YNNHIG-----VPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVI 189
                  N  G      P+ L R+  +    G+    L  S  G  +     VR      
Sbjct: 136 GVVSPQRNDYGSLTTPDPVVLHRLLCEISHEGVTHAALEASSHGLDQGRLDGVRLTAGAF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   H+     +E+   AK  +F+ L       L + D  +      +     + + +
Sbjct: 196 TNLGRDHMDYHRCVEDYLRAKMRLFDTLLPVSAPALIFADDVYSKKVIDAVTQARRRVLT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+  +    + + +    +  +E +++ K         G     N L+  G+       
Sbjct: 256 IGRKGHF-ITINRVEHQRSKQCIECRVENKIYTFDLPLAGDFQVANALVAAGLAIATGLS 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D    AL       GR +       +     ID ++            VL  + P  +G
Sbjct: 315 PDKVFSALETLQGAPGRLEFV-GKTEKNAPVYIDYAHKPEALE-----QVLLSVRPFTQG 368

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPR 420
           R I V G     G         L   ++      V ++  +            +  A+P 
Sbjct: 369 RLIVVFG----CGGDRDQGKRALMGKIAADKADIVIVTDDNPRTENPEKIRKDILQAVPT 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +I +           +    L  GD +++  K 
Sbjct: 425 AIEI---ADRGEAISYSVGLLKAGDTLIIAGKG 454


>gi|319408829|emb|CBI82486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6 diaminopimelate ligase
           [Bartonella schoenbuchensis R1]
          Length = 483

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/451 (17%), Positives = 139/451 (30%), Gaps = 35/451 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               + GIS DSR + P   F A++G   DG  ++  A+++GA ++V +     ++  + 
Sbjct: 17  ASIEITGISSDSRQVLPGYVFVALQGKQGDGRQYVNDAIKRGARVIVTD--YNCALEGVY 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-- 140
           +PV  V DV  +L   A          + A+TG+ GKT+    +           A I  
Sbjct: 75  VPVLRVVDVRHSLAIAAARFYGVQPEIVTAVTGTSGKTSVVSFVRQIWKHAGFCAASIGT 134

Query: 141 ---------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188
                       +     P+ L R+  +    G+    L  S  G  +     VR   A 
Sbjct: 135 VGVVSPKRNDYGSLTTPDPVMLQRLLCEIAGEGVTHAALEASSHGLDQGRLDGVRLAAAA 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   H+     +E+   AK  +F+ L       + + D  +            + + 
Sbjct: 195 FTNLGRDHMDYHPCVEDYLRAKMRLFDTLLPCDAPAIIFADDVYSQKVIDHVTRAGRPVL 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+S       R   Q  +Q                  +       +   L    +  A
Sbjct: 255 TIGRSGKFITINRIEHQRLKQCVECRMGNDIY----TFDLPLAGEFQVTNALMAAGLAIA 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                          +G   R     N      +   Y   P ++     VL  + P   
Sbjct: 311 TNVPPSSVFRSLKKLQGAPGRLELVGNTKDNAFVYVDYAHKPEAL---EQVLLSVRPFTL 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSI 422
           GR I V G     G         L   ++      V ++  +          KD L  + 
Sbjct: 368 GRLILVFG----CGGDRDQGKRPLMGKIAASKADIVIVTDDNPRTEDPAKIRKDILQAAS 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +    L  GD +++  K 
Sbjct: 424 GAMEIADRGEAIDYAVRLLEAGDTLIIAGKG 454


>gi|15896074|ref|NP_349423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium acetobutylicum ATCC 824]
 gi|24212684|sp|Q97FC1|MURE2_CLOAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase 2; AltName:
           Full=Meso-A2pm-adding enzyme 2; AltName:
           Full=Meso-diaminopimelate-adding enzyme 2; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase
           2; AltName: Full=UDP-MurNAc-tripeptide synthetase 2;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           2
 gi|15025861|gb|AAK80763.1|AE007779_8 UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum ATCC 824]
 gi|325510228|gb|ADZ21864.1| UDP-N-acetylmuramyl tripeptide synthase, MURE [Clostridium
           acetobutylicum EA 2018]
          Length = 483

 Score =  146 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 152/480 (31%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LLQ I    I       + GIS +S+ +     F +IKG  +DGHDFI  A Q G
Sbjct: 1   MKLKQLLQNIDYDLIKGDININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+++ D   SI +    +  V +   AL  L             ++ +TG+ GKTT 
Sbjct: 61  AAAVIIDEDFHDSIENT--TLVKVKNSKVALACLCNLFYEEPSRELNLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKK------------TYACIGSYNNHIGVPLT-------LARMPVDVDFG 163
              +   L +                   I     +   P            +       
Sbjct: 119 IHYIRDMLEAFGNSTGTIGTLGYELKDKEINVEKINPTTPEALELNQILRDFIDKGAKNA 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S L + R      +  + V T ++  HL     IE   + K ++         +
Sbjct: 179 VMEVTSSALMKHRVDYCSFK--VGVFTNLSQDHLDEHGTIENYKNEKIKL-------FKM 229

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  + +  +    G    +++G   NAD                V  +G S +V
Sbjct: 230 CPVGVINLDDNIAGEIIEKGTCEFFTYGVLTNADLTASDMVYKPNSVSFNVHYKGISSKV 289

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N+L  +G +  L  D ++ +K +S   P  GR +     LN+       
Sbjct: 290 KVNVPGEFTVYNVLAAIGSLLCLGIDFESILKLVSSIKPVLGRLETINNPLNKNIIIDYA 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + ++          +L        GR I V G     G         L  +       +
Sbjct: 350 HTPDS-------LEKLLIMAREMTNGRIITVFG----CGGDRDKSKRGLMGMAVGILSDY 398

Query: 404 VWLSGFHVLA-----LKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  +        +   + R +                       L + D++++  K 
Sbjct: 399 CIITSDNPRHEKPEDIIRDIERGMQTINSSYEKITDRRCAIKRGIEILKEEDILIIAGKG 458


>gi|255692978|ref|ZP_05416653.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
 gi|260621291|gb|EEX44162.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides finegoldii DSM 17565]
          Length = 483

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 93/474 (19%), Positives = 162/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   I       + GI+IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVQIAGDSNIEIAGINIDSRLVEAGQLFMAMRGTQADGHAYIPAAISKGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEKPVEGITYIQVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNRLLGRMADEGCKYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSKDGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALTNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV+++  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILIAGKG 457


>gi|325578826|ref|ZP_08148873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159650|gb|EGC71782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 489

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 157/462 (33%), Gaps = 48/462 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V  + +DSR +   + F A+KG  +D   F+  A+  GA  V++ TD+     S+  
Sbjct: 15  DINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQAISSGASAVILETDLENEHLSIQW 74

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV     +   L+ LA         K T++ +TG+ GKTT  ++L    + +    
Sbjct: 75  QNNVPVIRYYHLSAQLSALAGQFYGNPSEKLTLVGVTGTNGKTTVSQLLAQWATLLGHKA 134

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-----------------SHLGEIRFLTH 180
           A +G+  N  G+   +          + E+                   S  G  ++   
Sbjct: 135 AVMGTIGN--GLLDQVKEAKNTTGSAV-EVQANLADFVEKGADFASIEVSSHGLAQYRVE 191

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++   A+ T ++  HL     +E+ A AK   F  L     I    D      L    +
Sbjct: 192 ALKFKSAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLASELQILNADDPIGAAWLNELPN 251

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           ++ +    +F  +        + +   E + +E      +  +    IG     N+L+  
Sbjct: 252 SIAVSCHPNFHATSKQWLYATEIRFTHEGAVIEFVSSWGNGTLHSPLIGAFNVSNLLLAT 311

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++  L    D  I+ +S      GR +  + A           + +A           L
Sbjct: 312 AVLLALGYSFDDLIRTVSQLKGVNGRMELIKKAGKPTVIVDYAHTPDA-------LEKAL 364

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           +    H +G+   + G     G    +    L    +      V ++  +          
Sbjct: 365 NSARQHCKGKLWCIFG----CGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIE 420

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +     R   V      +    F   + V+ DV+V+  K 
Sbjct: 421 ADILTGFSRMEDVGVIPDREEAIKFTIENAVEDDVIVIAGKG 462


>gi|163786279|ref|ZP_02180727.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
 gi|159878139|gb|EDP72195.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2
           [Flavobacteriales bacterium ALC-1]
          Length = 251

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 121/232 (52%), Gaps = 8/232 (3%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N +S D+R +  +  +FA+KG ++DG+ F+  AV+ GA   VV+ +      +       
Sbjct: 14  NSVSTDTRKLPKECIYFALKGENFDGNKFVAKAVENGAKYCVVDDEDAMINEN----CIL 69

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V+DVL  L +LA   R      II++TGS GKTTTKE++   L++     A +G+ NNHI
Sbjct: 70  VEDVLTTLQQLATYHRNSIGIPIISLTGSNGKTTTKELINSVLTTTFNVKATLGNLNNHI 129

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GVPLTL     D+DFGI E+G +H  EI FL ++ +P   +IT    AHL  F  IE I 
Sbjct: 130 GVPLTLLSFSEDLDFGIVEMGANHQKEIEFLCNIAQPDYGLITNFGKAHLEGFGSIEGII 189

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
             K+E+++ L     +     +      K  +         +FG + + ++ 
Sbjct: 190 KGKSELYDFLRNNNKLVFINTNDE----KQINQINKYSKTITFGSNIDNNWF 237


>gi|91216026|ref|ZP_01252995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186003|gb|EAS72377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 487

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 154/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S+       +  I  DSR I+ Q+ F AIKG   DGH FI  AV  GA 
Sbjct: 4   LKDILYKVAIESVKGSTAVDIKKIHFDSRLISAQDVFVAIKGETADGHAFIEAAVANGAN 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           +VV        I    +    V D   AL  +A            +I +TG+ GKTT   
Sbjct: 64  VVVCEELPSEVIPE--VSYIQVKDCREALAVMASNYYDNPSANLKLIGVTGTNGKTTVTS 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMS 170
           +L     ++      I +    +                  +  +   +V      + +S
Sbjct: 122 LLYQMFKTLGYKVGLISTVVIKVDDKDYPTKLTTPDSLTINSYLKEMNEVGVEFCFMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +  T  +     V T ++  HL       +    K   F+ L K G    N DD 
Sbjct: 182 SHGIAQHRTLGLNFEGGVFTNLSQDHLDYHKTFAKYRDVKKRFFDQLSKKGFALTNVDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A      + +G     D++     +  E+S+  ++L     EV    IG 
Sbjct: 242 NGNYMLQNTKA----KTFGYGVKNLTDYK----VKILEKSFSGLKLNINGTEVWSRFIGD 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L    +  +L       ++ LS   P EGR + +  +            Y   P
Sbjct: 294 FNAYNLLAVYAVADLLEVKDIENLQNLSQLKPVEGRYQHHMSSTGIHVIVD----YAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +   + I    E     V       G    +    L   ++    + V L+   
Sbjct: 350 DALQNVLQTTNDIRSRSEELITVV-----GCGGDRDTTKRPLMGKIAGNLSTKVILTSDN 404

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  ++   + + +            +               D++++  K 
Sbjct: 405 PRTEDPDSIIKDIEKGVEPQDVSKTLSITSRQQAIKTACILAQQRDIILIAGKG 458


>gi|78188034|ref|YP_378372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           chlorochromatii CaD3]
 gi|78170233|gb|ABB27329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium chlorochromatii CaD3]
          Length = 516

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 148/457 (32%), Gaps = 39/457 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  +S DSR +     F A++G   DGH FI  A+++GA ++V     +    +      
Sbjct: 43  ITAVSSDSRDMIEGALFVAVRGFCTDGHRFIESAIERGACIIVCEE--LPQSITHGCLYL 100

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL  +A         +   I +TG+ GKTTT  ++T  L++       IG+  
Sbjct: 101 RVIDARKALAHVAALFYGNPAKQLRFIGVTGTNGKTTTSRIITEMLTAFAVPSGYIGTNL 160

Query: 145 NHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             IG                  L  + V+       + +S    +    + +R   A+ T
Sbjct: 161 CRIGKRDIPLERTTPEAHELHALFALMVEAGCKAVVMEVSSHALLLQRVYGLRFDAALFT 220

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK------AKSHALGI 244
            +   HL     ++  A AK  +F+ L+  G   +N DD++  L+        +      
Sbjct: 221 NLTQDHLDFHHTMQAYAEAKQLLFDQLQPDGVAIVNTDDAYAPLMLQRVAPSQRVCCTLQ 280

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + S  +        +   + +  +  E++L+    E     +G   + N++  L   +
Sbjct: 281 ANVPSVLQCPQYGQDFQAEVRHASLAATEMELRFPKGETELLTVGLAGSYNVMNVLQAAA 340

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                                   R            I   Y   P +++ A+  L  + 
Sbjct: 341 TGYCLGLQPAAICRALAAVHSVDGRMERVGRPNLPYQIFVDYAHTPDALQKALETLKALK 400

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALP 419
                  +         G         +   ++      V L+          A+ D + 
Sbjct: 401 GEEARLMVLF-----GCGGNRDRLKRPIMGSIAASLADVVILTSDNPRDESPDAILDEIE 455

Query: 420 RSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +                   S L  GDV+++  K 
Sbjct: 456 QGMQGAAHQRIADRAEAIRTAISQLQAGDVLLIAGKG 492


>gi|53711601|ref|YP_097593.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
 gi|81383834|sp|Q64ZL7|MURE_BACFR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|52214466|dbj|BAD47059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides fragilis YCH46]
          Length = 485

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  ++     +    +  +    V D   A+ K A        +   ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPVELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|288925516|ref|ZP_06419449.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
 gi|288337732|gb|EFC76085.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella buccae D17]
          Length = 483

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 159/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I+  +I    +  + GI+IDSR I P + F A+KG   DGH FI  A++ GA 
Sbjct: 3   LSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+     +       +    V     A+  +A        SK  ++ +TG+ GKTT   
Sbjct: 63  AVLCED--MPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + +Y     +P                  V        +  S
Sbjct: 121 LLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL      E   +AK   F+GL K      N DD 
Sbjct: 181 SHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++     A    TI ++     ADF+ R  +   E     + L+    EV    IG 
Sbjct: 241 NGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEG----MYLEVDGHEVGVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L   G   +L    +  +  +S      GR +  R A           + +A  
Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALE 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             + A   VL     +G+GR I V G     G         L  V ++     V ++  +
Sbjct: 353 NVLSAIHEVL-----NGKGRVITVCGA----GGNRDKGKRPLMAVEAVKQSDKVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L      +   V                   GDVV++  K 
Sbjct: 404 PRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457


>gi|94985823|ref|YP_605187.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
 gi|94556104|gb|ABF46018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Deinococcus
           geothermalis DSM 11300]
          Length = 429

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 101/462 (21%), Positives = 162/462 (35%), Gaps = 70/462 (15%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                   ++ DSR  +P+ AF A+ G    G+ F+  A+  GA  V+ +         L
Sbjct: 16  PEARSAKRLTWDSREASPEVAFVALPGEQMHGNRFVQAALAAGAPFVLTD---------L 66

Query: 82  SIP-VFGVDD-----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            +P    V          AL   A A R ++   ++ ITGSVGKTT K     AL++   
Sbjct: 67  DVPRAVRVPSQAGQGAREALFAWARAERAKNPL-VVGITGSVGKTTAKSYAAAALNAHFM 125

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                  YN    +   L          + E+G+  +GE+  L  LVRP + V+T I  A
Sbjct: 126 -----PVYNTMPAIACFLIEFGASGAPLVVEMGIDRVGEMAELVDLVRPDVGVVTAIGAA 180

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E +A  K  I +G                                       
Sbjct: 181 HLEQLGSLEGVAREKGVILQGRRGLVGTQAAPWFPHTP---------------------- 218

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                           + V  QG         +   +A  +     ++ +  A       
Sbjct: 219 --TYGFGEGVTYAGEALTVSPQGAQFTFQGVPVTLPLASRVQAEAAVLGLALALEAGLPL 276

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +       +    R  ++ G FT+ID++YNA+P ++ AA+  L+       GRRI+VL
Sbjct: 277 PEAAQRLAAVQVPGGRYRVHPGRFTVIDDAYNASPLAVTAALDALATF----GGRRISVL 332

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G M E+G   +  H  +            +  G     L +            T+  L  
Sbjct: 333 GRMLELGATERELHAQIGVHARQ-KADLTYGVGAFAAELGE--------RAYRTVPELLE 383

Query: 436 FIQSSLVDGDVVVVKSSNSC------------GFYRLINLLL 465
            + + + DGDVV+VK+S               G   ++  LL
Sbjct: 384 DLLAEVRDGDVVLVKASRGISWTPEQRAQEGVGLDVVVEALL 425


>gi|227822656|ref|YP_002826628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
 gi|227341657|gb|ACP25875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Sinorhizobium fredii NGR234]
          Length = 486

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 145/460 (31%), Gaps = 36/460 (7%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G   +  + GI+ DSR + P + F A+ G   +G  +I  A+ +GA  V+V   
Sbjct: 14  LSAQLQGNAAEIDIAGITADSRQVKPGDLFVAVAGTKANGSAYIADALSRGAAAVIVAE- 72

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              S      PVF + +    L + A     R   T++A+TG+ GKT+         +  
Sbjct: 73  --GSGADAGAPVFELSEPRRFLAQAAARLFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179
               A I              +     P++L ++  +  D G+    +  S  G  +   
Sbjct: 131 GLAAAMIGTTGVTAPGRNDYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQSRL 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             VR   A  T +   H+     +E   ++K  +F  L   G+  + + D  +      +
Sbjct: 191 DGVRLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFGALLPKGSPAVIFADDQWSAEAIAA 250

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + + G++ +     R      +QS             V           +   
Sbjct: 251 ARKAGHDVRTVGRNGDFISLKRVEHFRHKQSAEVHVGDDIFEIHV----PLAGDFQVANA 306

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +    A  A S     +G   R           L    Y   P +++  +  
Sbjct: 307 LVAAGLAMSTGIEAKVAFSALEKLQGASGRLELVGQTKDGALAYVDYAHKPDALENVLES 366

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
              + P   GR I V G     G         +   ++      V ++  +  +      
Sbjct: 367 ---VRPFTTGRVIIVFG----CGGDRDKGKRPIMGQIAARLADVVIVTDDNPRSEIPETI 419

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 420 RSEIMAGAKGATEIADRAEAIRTAVGMLKAGDTLIVAGKG 459


>gi|261493510|ref|ZP_05990032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495863|ref|ZP_05992295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308490|gb|EEY09761.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310843|gb|EEY12024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 496

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 141/463 (30%), Gaps = 58/463 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82
           ++DSR +   + F A+KG   DG  FI +A+++GA +++   D       L         
Sbjct: 25  TLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEAELDSKFAKFNL 84

Query: 83  -----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  V  V ++   L+++A A       K T+  ITG+ GKTTT ++L         
Sbjct: 85  DRTACCKVVSVPNLPKLLSEIAGAFYHNPSHKLTLAGITGTNGKTTTAQLLAQW--HNLL 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179
                       G+   +          I                  + +S  G  +F  
Sbjct: 143 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQRNLANFVELGADFCAMEVSSHGLAQFRA 202

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   +A+ T ++  HL   + +EE A AK  +      T    +N DD        + 
Sbjct: 203 EALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRL-FNELSTKAQVINADDEIGREWLTQL 261

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 +      S +   +    K   + + +  +    + E+    IG     N+L  
Sbjct: 262 PNAVAVSTDPEFDSNHRFVKATAVKFTLQGASIAFKSSWGNGELHSRLIGAFNVNNLLTA 321

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D+   IK         GR +                + +A           
Sbjct: 322 FAGLLALGFDIQDLIKTSPNLVGVAGRMECITAPNKPMVIVDYAHTPDA-------LEKA 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           L     H EG    + G     G    +    L   ++      V  +  +         
Sbjct: 375 LQAARLHCEGELWCIFG----CGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKI 430

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +     +   + +    +             DV+++  K 
Sbjct: 431 MADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471


>gi|197334817|ref|YP_002157002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
 gi|197316307|gb|ACH65754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio fischeri MJ11]
          Length = 493

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/480 (17%), Positives = 169/480 (35%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL         +     ++ +++DSR ++P   F AIKG   DG  FI  A+++
Sbjct: 1   MMQLSELL----LSWCELNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           GA  V+ + D     G++ +     V  +D +   L+ +A A     K    ++ ITG+ 
Sbjct: 57  GAVAVIADADEDNIAGTVKVINNAIVVYIDSLYTQLSAIAGAFYQADKRCMQLVGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166
           GKTT  +++    + + +  A +G+             N  G P+ + +   +++    +
Sbjct: 117 GKTTISQIIAQWTTLLDQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAK 176

Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           L     S  G ++   + +    AV T ++  HL     +E  A AK  +F       +I
Sbjct: 177 LTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMENYAEAKKLLFTSHRPKHSI 236

Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               D    + LK   HA+ +     +                 +E   + V     ++ 
Sbjct: 237 INADDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIQLSVSSDWGNVA 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+    +  L  D+    +  S  +   GR + +            
Sbjct: 297 FSVPLIGAFNASNILVAFATLLSLGYDIQALAQTASQLNAVIGRMELFTADNKAKVVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A   ++         +  H EG+   + G     G    +    +   ++     
Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPMMASIAEQQAD 405

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + LS  +            +   L  S   H          F  S   + D++++  K 
Sbjct: 406 VIILSDDNPRSEEPSLITNDMLAGLKNSESAHVIHDRFEACQFALSQANENDIILLAGKG 465


>gi|312622930|ref|YP_004024543.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203397|gb|ADQ46724.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 486

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 158/477 (33%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL++ I    +        +  I+ +S++      F  IKG   DGH++I  A+Q 
Sbjct: 1   MKLKDLIENIDVLETNVGDFGKDITDIAYNSKNAKEGCVFVCIKGFKTDGHEYINEAIQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA LVVV+     S     I      +   AL  ++            +I +TG+ GKT+
Sbjct: 61  GACLVVVDEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166
           T  M+   L +  +    IG+  N IG               +     +M  +    +  
Sbjct: 121 TTFMIKSILEAHGQKVGLIGTIKNMIGSIEIEAQHTTPESYDLQKLFWQMKNEGVDSVV- 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S      F  +     + V T +   HL     +E   +AK ++F     +    +N
Sbjct: 180 MEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLF---GMSKKRVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +             ++ K  +A    R  K    ++  E+   G+  E+  +
Sbjct: 237 ADDMWGKRIIEMYPDS-----VTYAKDSDAQVFARNIKLFVNKNQFELWYNGEKEEITLN 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L        L   +D   K L       GR +                + 
Sbjct: 292 IPGVFSIYNSLAASACCISLGIKLDDIKKGLENLKAVPGRFEIVESNQKFTVVIDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++++  ++   +GR++ + G     G         +   ++      V +
Sbjct: 352 DG-------LLNLMKTVNEVTDGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIV 400

Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            + + + + ++             +   +  + D +V+  K 
Sbjct: 401 TSDNPRTEDPLKIIADILEGIKKTNVEYVVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|225848633|ref|YP_002728796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644526|gb|ACN99576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 490

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 154/478 (32%), Gaps = 45/478 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       + +     V GI+ +S  +    AFFAIKG   DGH FI  A+ K
Sbjct: 1   MKELQDLL--TGEKVVNLGKSQVVKGITNNSSKVQKDYAFFAIKGNSTDGHHFIEDAITK 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVF-GV--DDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           GA  V +    +        P    V  ++   +L   +            +I ITG+ G
Sbjct: 59  GASTVFIQDTSIIDTLKRKYPYINIVFSENTRKSLATASNKFYNEPSKYLKVIGITGTNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGI 164
           KT+   +L     +       IG+ N  IG                     +  +    +
Sbjct: 119 KTSVSNLLAQYYENAGYKVGVIGTINYRIGDEILSSGHTTPDPVQWFETLNLMKEKGCDV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
               +S     +F  +    H  + T +   HL     +E    AK E      +     
Sbjct: 179 VVAEVSSHAAHQFRVYSTLFHGGIFTNLTQDHLDYHGTMENYFLAKREF-FNQIQLFNDK 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +    + +    + I         +F+++ +     ++   ++ +GK++   
Sbjct: 238 AIASVNIDDPYGKRIYNDFKEKIDFITYGFEGEFKIKDYNLSLFETLFNIEYKGKTLNFK 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+  ++  +     D+D          P  GR   +     + F  +ID 
Sbjct: 298 TKLRGLFNVYNLSASISFLIKDGFDIDFLKDKTLDLKPIRGR---FEVVEAKDFIVVIDY 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++  +        ++L  ++   + R I V G     G         L   ++      V
Sbjct: 355 AHTPDALE-----NILKSLNQIKQNRVITVFGA----GGNRDRTKRPLMGKVAQDFSDIV 405

Query: 405 WLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +         +  + + + +   V           +   +   GD+V++  K 
Sbjct: 406 ILTSDNPRFEDPNQIIKDILEGITQKSKVIVEPDRKKAIEYAIKTAQKGDIVLIAGKG 463


>gi|299536844|ref|ZP_07050151.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
 gi|298727668|gb|EFI68236.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           fusiformis ZC1]
          Length = 461

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 111/471 (23%), Positives = 187/471 (39%), Gaps = 25/471 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQE--AFFAIKGPHYDGHDFILHAVQ 62
           +   L   +QG  I    Q  V   I  +   +       F        D H       +
Sbjct: 5   SVQKLRNVLQGKLIHGSEQWSVKQAIYYNRHDLTKSHSLLFV----SRND-HINWQEIDR 59

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           KG  L++ +        +L +  V  V  V  A        R   +  ++A+TG+ GKTT
Sbjct: 60  KGPSLIISDKPSTELKNALENTTVLQVKSVAQAYWAFIEYYRGLFEIPVVALTGTCGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TKEML    S   +  A + S N        L  +       IFELG+ + G I+    +
Sbjct: 120 TKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGIDDKTQAAIFELGLGNTGNIKHQCMI 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I +IT I   HL     +E    AKAEI EG+++ GT+ +N DD+  + +  K   
Sbjct: 180 YQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIKEDGTLIINADDANTKKISLKRFK 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I     FG    AD++  K +  +      +++  +   V   G G H   N L  + 
Sbjct: 240 GKIIK---FGLQDTADYKASKVEFANTGMKFVLEVADERYNVFVPGYGEHQVYNALAAIA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ V+ 
Sbjct: 297 ASHEMGLTIRQAIAGLRTFK---QMARHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVID 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +    +   I VLGD+  +G   + +H ++  ++++  I  +   G     + D   + 
Sbjct: 354 TVGKDKK--VILVLGDIKRLGNFEEKYHREIGSMVAVRKIDTLITIGKRAEKIADQAQKD 411

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSCGFYRLINLLLE 466
             S  VH  + + G+   ++  L    +V++K    S S       N L  
Sbjct: 412 GTSAEVHTFKEVAGVLELLKPKLDADTIVLIKGPMSSRSM--IEFANKLKN 460


>gi|298372252|ref|ZP_06982242.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275156|gb|EFI16707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroidetes oral taxon 274 str. F0058]
          Length = 500

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/476 (17%), Positives = 140/476 (29%), Gaps = 37/476 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L+ +            +N IS DSR I   + F A+ G   DGH F+  A+  GA 
Sbjct: 3   ISKILENVSAK-KSYSKDIDINNISDDSRKIGKGDMFVAVCGAVADGHAFVETAIGNGAV 61

Query: 67  LVVV--NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
            VVV  ++D+        I V  V+D   AL ++A     R      ++ ITG+ GKTTT
Sbjct: 62  AVVVNSSSDVPCLAKYPDIQVIEVEDTAKALGEIAANFYGRPSESLNLVGITGTNGKTTT 121

Query: 123 KEMLT---------IALSSIKKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELG 168
             +L            L S  K Y C+         P  L         V        + 
Sbjct: 122 ATLLYKLFLGMGFGAGLISTIKNYICLEERETINTTPNVLETNRLLADMVRAGCDYCFME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     +    AV T +   HL     ++    AK   F+ L +T     N D
Sbjct: 182 VSSHATVQQRIAGLTFRGAVFTNLTQDHLDYHKTMDNYRDAKKLFFDHLPQTAFALTNAD 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +   + A                     ++  + Q    V  +GK    V    
Sbjct: 242 DRNGNFMLQNTKAQRYTYSTRSLADFKTKIIENTFEGMTLQMETNVTDKGKERYEVSTPF 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                   L  +   + L            +    E      R  + +         Y  
Sbjct: 302 VGSFNAQNLTAVFGAAALLCQGKGIDNQTILTKLSELSPVSGRFEVIRMAGISAIVDYAH 361

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++K  +S ++ +          V       G         +    +      + L+ 
Sbjct: 362 TPDALKNVLSTINDVKSPDSRVVTVV-----GCGGDRDKTKRPIMAQEAAAQSDTLVLTS 416

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L ++                        GD+V+V  K 
Sbjct: 417 DNPRTEDPQSILDDMAKGLDKNRLEDTIVIVDRRQAIKTACKLAKSGDIVLVAGKG 472


>gi|313893650|ref|ZP_07827218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441794|gb|EFR60218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 494

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/481 (16%), Positives = 145/481 (30%), Gaps = 47/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +Q   +       +  I+ DSR++     F A+ G   DGH+++  A++ 
Sbjct: 1   MKQLQDIVKTLQAPQVTGNTAVEILDITADSRAVKAGSLFIALDGATVDGHNYVNKAIEA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+V+  +     S  I V  V+D   A+                +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEV---SGDICVITVEDTRTAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T  M+   L +       IG+ +  IG            V      +   V+ G+    +
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDATYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
            +S           V    AV T +   HL      E    A  K               
Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGK 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +    +        I ++    N            + S   V   G    V  
Sbjct: 238 GAIINIDDAYGHRVVEKTKAPIITYSIDGNGTLNAHDVDMTPKSSRYTVSYDGHDYTVAM 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L  +G   +    ++   KAL  F    GR +                +
Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHT 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          ++L       E R I V G     G    +    +   ++      V+
Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVY 406

Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           ++  +                +K+ L    +                +   GD+V++  K
Sbjct: 407 VTSDNPRTEDPVQIVKDVEAGVKEGLREGSYYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|323343874|ref|ZP_08084101.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
 gi|323095693|gb|EFZ38267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella oralis ATCC 33269]
          Length = 483

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 164/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ I+  ++       + G++IDSR IA    F A+KG   DGH FI  A+++G
Sbjct: 1   MKLNELLKNIKPVAVIGEQSIDIKGVNIDSRKIAEGHLFIAMKGTQVDGHRFIPKAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++     +  +    +    V+    A  K+A         K  ++ +TG+ GKTT 
Sbjct: 61  AKAILCED--MPEMKVEGVTYVKVESTEDAAGKVATLFYGDPSKKLKLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L      +       + + +Y     +P                  V+       + 
Sbjct: 119 ATLLYNMFRKMGYKCGLLSTVCNYIEDEAIPADHTTPDPIELNELLGRMVNTGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++    + T +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIAQKRISGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDELPKGAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF+ R  +   E     + L     EV    I
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSTRSAADFKARILECHFEG----MYLDIDGHEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S  H   GR        +   +T I + Y  
Sbjct: 291 GKFNVSNLLTVYGAARMLGKQPEDILLVMSTLHSVSGR---LEPIHSPEGYTAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  + ++  +G+G+ I V G     G         L    ++     V ++ 
Sbjct: 347 TPDALENVLKAIHEV-LNGKGKLITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            + D L       V                   GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLDGLNAQQLKKVISIVDRKEAIRTACMMAQKGDVILVAGKG 457


>gi|320160465|ref|YP_004173689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
 gi|319994318|dbj|BAJ63089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaerolinea thermophila UNI-1]
          Length = 522

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 148/481 (30%), Gaps = 46/481 (9%)

Query: 6   TFHDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +L++ +       G +P   V GI+ + R   P   F A  G   DGH FI HA+++
Sbjct: 8   TLPELIRHLPIQVFWEGTLPDVPVTGITYNHRDAQPGYIFVAFPGTRVDGHTFIPHAIER 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
           G   VV     +  I  LSIP   V +   AL  L+ A       + T+I +TG+ GKTT
Sbjct: 68  GIVAVV----GMQEISGLSIPYLRVSNSREALAYLSAAFYNFPAHEMTVIGVTGTDGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFE------------- 166
           T  ++   L +   +   + + N  IG  +      V       +               
Sbjct: 124 TSNLIYQILLAAGHSAGIVSTVNAVIGDEVVDTGFHVTTPEAPEVQRYLSRMRAAGLTHV 183

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTG 221
            L  +  G  +         + V+T I   HL      E            + E  EK  
Sbjct: 184 VLEATSHGLEQHRVTGCEFDVGVVTNITHEHLDYHGSYEAYRAAKGRLFTMLSETPEKPH 243

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +       +L      S+G ++ AD +    +  +++   ++  +    
Sbjct: 244 GNPRLAVLNRDDQSYEYLQSLVRVPAVSYGLAEGADLRAENIRYEADRLRFDIVGRDFRQ 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-IKALSVFHPKEGRGKRYRCALNQGFFT 340
            V    +G +   N L       +          + ++      GR +R     +     
Sbjct: 304 PVETCLVGEYNVSNCLAAFAATVLGLGIDSQHAAQGIANMSGVPGRMERIHMGQSFHAIV 363

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               + NA           L        GR IAV G         +    +++  L+  +
Sbjct: 364 DFAHTPNA-------LKQALLTARQITRGRVIAVFGSAGLRDREKRRLMAEVSAQLADIS 416

Query: 401 I--------SHVWLSGFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           I          +      +    +     R    +                   D+V+  
Sbjct: 417 IFTAEDPRTESLEGILEEMARGAESQGAVRGKQFYLVPDRGDAIRMAVQMAKPDDLVIAC 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|153009069|ref|YP_001370284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151560957|gb|ABS14455.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 490

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 149/476 (31%), Gaps = 44/476 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++    +  + G   +  + G++ DSR +     F A+KG   DG  F+  A
Sbjct: 1   MT--MKLKEIA-LFKELASGDAGEVEITGVTSDSRKVERGFLFAALKGVKADGAAFVADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD   AL   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGASAIIAGKDT--AIADAGVPVLHVDDPRLALAVAAAQFYGKQPQVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFE-- 166
           +         +      A IG+             +                D G+    
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELADEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     V+      T +   H+   + IEE   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVKLAAGAFTNLGRDHMDYHATIEEYLGAKMRLFNTLLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+       +   +   E+    V+++         
Sbjct: 236 FSDDHFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGDEIFEIE 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  Q     +     +   V  A    ++   K   G+       +       +  
Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL+ + P   GR I V G     G         +   ++        +
Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVAIV 404

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +  A P +  +              S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAAPGATEI---GDRREAIFTAVSMMQAGDTLVVAGKG 457


>gi|317478451|ref|ZP_07937611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
 gi|316905340|gb|EFV27134.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides sp. 4_1_36]
          Length = 482

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KG
Sbjct: 1   MRLSDLLQTIQPVRIAGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +       I    V D   A+ K+A        SK  +I +TG+ GKTT 
Sbjct: 61  AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y + + VP                   D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457


>gi|311030017|ref|ZP_07708107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Bacillus sp. m3-13]
          Length = 496

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 149/460 (32%), Gaps = 38/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
              G  P   V+ I  DSR +     F  IKG   DGH +I  A++KGA ++VV    + 
Sbjct: 14  KVYGDFP-LSVSNIFSDSRQVTTDSVFVCIKGYTVDGHRYISSAIEKGASVIVVQD--MP 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V D   AL +LA A      +K  I+ +TG+ GKTT   ++   +    
Sbjct: 71  EQLVEGICYVHVRDTERALGQLANAFFDFPSTKLRIVGVTGTNGKTTVSSVINNVMRKEG 130

Query: 135 KTY------------ACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTH 180
                              S N    V      +   V+ G+ +  + +S  G +     
Sbjct: 131 YKTGLSGTIEIDIDGEKFESKNTTSDVLTMQRMLKDMVEAGVTDVVMEVSSHGLVLGRLA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V     V T +   HL     +E   +AK  +F  L +          +  +       
Sbjct: 191 GVEFQNGVFTNLTQDHLDFHGTMENYKNAKGLLFAQLGQDMRKDKAAILNVDDAATKDYV 250

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    I ++G    ADF+ R+ +    ++   ++      E+    +G     N+L  +
Sbjct: 251 QMTGARIITYGIKNEADFKAREIQFFENKTSFVLETNFGEFELEIPFVGEFNVYNILSVI 310

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            ++       +  +  L    P  GR +       +         Y     ++  A+  +
Sbjct: 311 CVLWDKGMPFERILNHLRETTPPSGRMQTLETGDKRNVIID----YAHTEDAIGKALDSI 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLALKD 416
              S H     I         G   +     +  + +  +   ++ +          +  
Sbjct: 367 RMFSKHKIISII------GTGGGRDKDKRPKMGRIATEKSEYVIFTTDNPLDEPGEEIVQ 420

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +       +       +   +       +GDV+++  K 
Sbjct: 421 GMAEGAVHENFECIPDREQAIIRAVEIAGEGDVILIAGKG 460


>gi|282850407|ref|ZP_06259786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
 gi|282579900|gb|EFB85304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella parvula ATCC 17745]
          Length = 494

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGHD++  AV+ GA 
Sbjct: 4   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+V+  +     S  + V  V+D   A+                +I +TG+ GKTTT  
Sbjct: 64  AVLVSKPIE---ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMS 170
           M+   L +       IG+ +  IG            V      +   V+ G+    + +S
Sbjct: 121 MIRHILRAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228
                      V    AV T +   HL      E    A  K                  
Sbjct: 181 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKSNQVKSGKGAV 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        I ++    +            + S   V   G    V  +  
Sbjct: 241 INIDDAYGQRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +G   +    ++   KAL  F    GR +                + + 
Sbjct: 301 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    ++L       E R I V G     G    +    +   ++      V+++ 
Sbjct: 361 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 409

Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                +KD L    H                    GD+V++  K 
Sbjct: 410 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKG 467


>gi|126253664|sp|Q68WE2|MURE_RICTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235381|emb|CAC33731.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Rickettsia typhi]
          Length = 492

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 48/455 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+          ++   V
Sbjct: 13  KINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE----NKKNTVIDKV 68

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+   
Sbjct: 69  IYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGL 128

Query: 146 H--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIA 187
                      VP       ++                    S  G  +      + +I 
Sbjct: 129 EIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIV 188

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T+ +  HL      E    AK ++F        I +   D                  
Sbjct: 189 SFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKF 248

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + GK    D Q+ K         ++         +    IG   A N+L+    +    
Sbjct: 249 ITVGK--KGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYYTG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D  I+ALS   P +GR         +   T I   Y+  P +++ A+  L  I PH 
Sbjct: 307 FKFDEIIEALSKVKPVKGRM-------ERIDGTNIFVDYSHTPDALEKALIELQNIKPH- 358

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
            G+   + G     G         L   ++     +V ++  +            +   +
Sbjct: 359 GGKLSVIFG----CGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGI 414

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +    E+ +    +  ++L   D++++  K 
Sbjct: 415 GTATYTEI-ESREEAIKYGINNLKQDDILLIAGKG 448


>gi|51473775|ref|YP_067532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia typhi str. Wilmington]
 gi|51460087|gb|AAU04050.1| MurE synthetase [ambiguous] [Rickettsia typhi str. Wilmington]
          Length = 498

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/455 (18%), Positives = 158/455 (34%), Gaps = 48/455 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            +NG+S +S+++   E FFA+KG + DG+DFI  A+  GA LV+          ++   V
Sbjct: 19  KINGLSTNSQTVKENEVFFALKGQNVDGNDFINDALNNGAVLVITE----NKKNTVIDKV 74

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             V+DV  AL +       +    +I++TG+ GK++    +      ++K  A IG+   
Sbjct: 75  IYVEDVYEALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQTYFLLRKKAAFIGTIGL 134

Query: 146 H--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPHIA 187
                      VP       ++                    S  G  +      + +I 
Sbjct: 135 EIFGCNNIINDVPSLTTLDYLNFRKIAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVNIV 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T+ +  HL      E    AK ++F        I +   D                  
Sbjct: 195 SFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLRNNNVKF 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + GK    D Q+ K         ++         +    IG   A N+L+    +    
Sbjct: 255 ITVGK--KGDVQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYYTG 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D  I+ALS   P +GR         +   T I   Y+  P +++ A+  L  I PH 
Sbjct: 313 FKFDEIIEALSKVKPVKGRM-------ERIDGTNIFVDYSHTPDALEKALIELQNIKPH- 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
            G+   + G     G         L   ++     +V ++  +            +   +
Sbjct: 365 GGKLSVIFG----CGGDRDKTKRGLMGKIAAKFADNVIITDDNPRFEDPKLIRTEIIRGI 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +    E+ +    +  ++L   D++++  K 
Sbjct: 421 GTATYTEI-ESREEAIKYGINNLKQDDILLIAGKG 454


>gi|315606649|ref|ZP_07881660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
 gi|315251659|gb|EFU31637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella buccae ATCC
           33574]
          Length = 483

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 98/474 (20%), Positives = 159/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I+  +I    +  + GI+IDSR I P + F A+KG   DGH FI  A++ GA 
Sbjct: 3   LSKLLKNIKPTAIVGDAEVEITGINIDSRKIGPGQLFVAMKGTQVDGHRFISKAIELGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+     +       +    V     A+  +A        SK  ++ +TG+ GKTT   
Sbjct: 63  AVLCED--MPENTVEGVTYVQVASTEDAVGPVATLFHGDPSSKLKLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + +Y     +P                  V        +  S
Sbjct: 121 LLYNMFRKMGHKVGLLSTVCNYIEDEAIPADHTTPDPIELNELLDRMVKAGCEYVFMECS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL      E   +AK   F+GL K      N DD 
Sbjct: 181 SHAIAQKRIGGLKFTGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++     A    TI ++     ADF+ R  +   E     + L+    EV    IG 
Sbjct: 241 NGMVMVQNCKA----TIKTYSTRTMADFRARIIECHFEG----MYLEVDGHEVGVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L   G   +L    +  +  +S      GR +  R A           + +A  
Sbjct: 293 FNVSNLLAVYGAAIMLGKKPEDVLVVMSTLKSVSGRLEPIRSAEGVTAIIDYAHTPDALE 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             + A   VL     +G+GR I V G     G         L  V ++     V ++  +
Sbjct: 353 NVLSAIHEVL-----NGKGRVITVCGA----GGNRDKGKRPLMAVEAVKQSDKVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L      +   V                   GDVV++  K 
Sbjct: 404 PRFEEPQDIINDMLAGLNAQQMKKVVSIVDRKEAIRTACMMAQKGDVVLIAGKG 457


>gi|239817426|ref|YP_002946336.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
 gi|239804003|gb|ACS21070.1| Mur ligase middle domain protein [Variovorax paradoxus S110]
          Length = 1024

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 122/478 (25%), Positives = 201/478 (42%), Gaps = 40/478 (8%)

Query: 5    WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ-EAF-------------FAIKGP 49
            WT  ++ +   G  +         +G++  S  +      F              A+KG 
Sbjct: 569  WTAGEMARVTGGEWVVRPEDGWRASGVTQRS-FLRKGRVVFEHQARPSKTPLAAVALKG- 626

Query: 50   HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                       V + A  V+      A      +PV  VDDV  A+  L   AR      
Sbjct: 627  -----------VLQPAAAVLCTDP--APHLDKRVPVLQVDDVPQAVLALGAHARTEFTGR 673

Query: 110  IIAITGS-VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +  + GS    +T   ML  AL+   +     G+ +   G+   L  MP    + + E+G
Sbjct: 674  VCGVLGSGTAGSTVAAMLADALAVWGEVGRPEGNVSLPSGMAWNLTCMPRHAAYWVLEMG 733

Query: 169  MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              H+        LVRP +AV+T ++ A   +    E  A   + IFEG+    +  LN D
Sbjct: 734  SPHMLATA---QLVRPMLAVVTGLSAASQKHRGPSEAAAHMDSRIFEGMAPGDSAVLNRD 790

Query: 229  DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               F      + A  ++ + ++G+ K+AD +L       +   ++ Q+ G+  ++  +  
Sbjct: 791  LPEFATFAEAAMAHQLQIV-TYGEHKDADVRL----LSFDHGEVQAQVLGEPFQLRLNAP 845

Query: 289  GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            G HM  + +  L  +  +   +  A++  + F P  GRG  +   +  G F LIDE+Y+A
Sbjct: 846  GRHMGASAVAALAALQAMRLKLAAAVEPFAQFEPPGGRGALHTIHIGGGSFKLIDETYDA 905

Query: 349  NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            NP+SM+AA+ +LSQ       R +A+LGDM E+G  +Q  H+DL   L       V L G
Sbjct: 906  NPSSMRAALELLSQAPCEPARR-VAILGDMQELGPAAQRHHLDLEPELLASQPDRVLLCG 964

Query: 409  FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + AL   +   +  H+   +  L   +   L  GD V+ KSS   G  RL  +L  
Sbjct: 965  PLMRALHARIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLKA 1022


>gi|149914521|ref|ZP_01903051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
 gi|149811314|gb|EDM71149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. AzwK-3b]
          Length = 501

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/465 (15%), Positives = 157/465 (33%), Gaps = 39/465 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71
           G +     +  + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +    
Sbjct: 13  GLTAQGGRRADITGLAVDSRQVRDGTLFAALPGTRVHGAEFIQYALRMGAAAILTDAAGA 72

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +   +D    L   A          ++ +TG+ GKT+          
Sbjct: 73  RIAADVLAQSDAALIVAEDPRQTLAYTAALWFGAQPEIMVGVTGTNGKTSVASFCRQIWC 132

Query: 132 SIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFL 178
            +      IG+                 P+TL R+  + +        +  S  G  +  
Sbjct: 133 ELGYEAVNIGTTGVEGAYEAPLAHTTPEPITLHRVLAECEVAGVTHAAMEASSHGLEQRR 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  +  +  HL   +  +E  +AKA +F  +     + +   D       A+
Sbjct: 193 LDGVHLVAAGFSNFSQDHLDYHATFDEYFAAKAGLFARVLPEDGVAVINIDDPKGPAMAE 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 + + + G+   +D  ++  +       +  + +G++ ++  + +G    +N+ +
Sbjct: 253 IARARGQDLITVGRKPGSDLHIQAQRFAPTGQDLRFEWKGRAHQIRLNLMGGFQGENVAL 312

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    +D D     L       GR +      N      +D ++  +  S      
Sbjct: 313 AAGLVIAAGSDPDRVFDTLRHMKTVRGRMQLAATRRNGA-AVFVDYAHTPDAVST----- 366

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            LS + PH  GR +A++G     G    +    L    +  N   V ++          A
Sbjct: 367 ALSALRPHVMGRLVAIIGA----GGDRDTAKRPLMGAAAAQNADLVIVTDDNPRSEDPAA 422

Query: 414 LKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ A+   +                   L     L  GD +++  
Sbjct: 423 IRAAVMAGVRDAGGADWATEVGDRAEAILRGVDMLGPGDALLICG 467


>gi|299131930|ref|ZP_07025125.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
 gi|298592067|gb|EFI52267.1| UDP-N-acetylmuramyl-tripeptide synthetase [Afipia sp. 1NLS2]
          Length = 480

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/469 (18%), Positives = 157/469 (33%), Gaps = 40/469 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L             +  V G+++DSR++ P + FFA+ G   DG  FI  A++ G
Sbjct: 1   MNLRELFSG-DATFDPQTSELAVAGLAVDSRAVKPGDVFFALGGSKTDGARFIGAAIEAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV +        S+S+PV    +   AL   A A   R   TI A+TG+ GKT+   
Sbjct: 60  AVAVVADHAH-----SVSVPVIVTSNPRRALALAAAAFYPRQPQTIAAVTGTSGKTSVAA 114

Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMS 170
                  S+               +  +               +      G+    L  S
Sbjct: 115 FTRQLWDSLGYDAASLGTIGIVSRHRNVYGSLTTPDPVALHRALDELAGDGVTHLALEAS 174

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR   A  T ++  H+     +E   +AK  +F  L   G   +   D 
Sbjct: 175 SHGLDQHRLDGVRIAAAAFTNLSRDHMDYHPTVEHYLAAKLRLFTDLAPEGAPAVIAADH 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                   +       + + G+ K    +L           M +Q +G++  +    +G 
Sbjct: 235 EHSAAVIAAARARKLDVITIGR-KGEGIRLVDATIDGFGQKMTIQHRGQTHRLRLPLVGE 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N L+  G+V     D      AL      +GR +          F      Y   P
Sbjct: 294 FQIENALVAAGLVIATGGDATKTFSALEQLEGAKGRLELIGDCRGAPVFVD----YAHKP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++  A+     + P+ +GR + V G     G    +    L   +++     V ++  +
Sbjct: 350 DALMKALEA---LRPYAKGRLVVVFGA----GGDRDAGKRPLMGAIAMRYADAVIVTDDN 402

Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +        + L  +                 +SL  GDV+++  K 
Sbjct: 403 PRSERPATIRAEILAAAKGAKEIGDRAEAIRSAVASLQPGDVLLIAGKG 451


>gi|296534967|ref|ZP_06897261.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296264705|gb|EFH11036.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 395

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 146/380 (38%), Positives = 208/380 (54%), Gaps = 2/380 (0%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V D L  L  L  AAR RS A I AITGSVGKTTTKEML   L+++  T+A + SYN
Sbjct: 1   LLRVGDTLAGLQALGAAARARSTARIAAITGSVGKTTTKEMLRHGLAALAPTHAAVASYN 60

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N  G+PLTLARMP D  +G+ E+GM+H GEI  L  L  PH+A ITT+  AH+ +   +E
Sbjct: 61  NQWGLPLTLARMPRDSAYGVLEIGMNHRGEIAPLARLAAPHVAAITTVEAAHIGHLGSLE 120

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           EIA  KA+I +GL     + L  D + F  L  ++ A G+  + +FG    A+++L  ++
Sbjct: 121 EIAEEKADIMQGLAPGAPVVLPRDSASFARLAGRAEAAGL-RMVTFGADPAAEYRLLDYR 179

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +E     + L+G++  +     G H+A N L  + +   L AD    + AL+ F P  
Sbjct: 180 GGAESGLATLSLRGETHALALAAPGRHLALNALAAIALAEALGADRAGFLAALTEFRPGA 239

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GRG R    L  G   LID+SYN  P +M+A + VL    P   GRRIAVLGDM E+GE 
Sbjct: 240 GRGGRVVLDLPGGSALLIDDSYNGQPPAMRAGLGVLGSQIPGPGGRRIAVLGDMRELGEH 299

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             + H  L   + L     V+  G  +  L DALP +    + ++ D L   ++ ++  G
Sbjct: 300 GPALHASLLPDV-LAAADMVFCCGALMRGLYDALPENRRAAHRDSSDELAPLVRQAVRPG 358

Query: 445 DVVVVKSSNSCGFYRLINLL 464
           DV++VK S       ++  L
Sbjct: 359 DVILVKGSLGSRMAVVVRAL 378


>gi|124003961|ref|ZP_01688808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
 gi|123990540|gb|EAY30020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microscilla marina ATCC 23134]
          Length = 502

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/477 (17%), Positives = 158/477 (33%), Gaps = 47/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL  I+           +  I  DSR +   + F A+KG   DGH +I  AV  
Sbjct: 1   MTNLKQLLHHIEVIQTRGNAPESIENIHFDSRKVQANDLFVAVKGTQADGHQYIGQAVAL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +VV  T       S S     V +   AL  LA         K  ++ ITG+ GKTT
Sbjct: 61  GAKVVVCET--FPKNLSDSATYIQVANSAKALGWLASNYYDHPSKKLKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVP-----------LTLARMPVDVDFGIFEL 167
           T  +L              + I +Y +   +P             L    V        +
Sbjct: 119 TVTLLHQLFRKFGYRVGLLSTIQNYIDDTALPARLTTPDPLELNRLIAEMVKAGCTHCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +    A  T I+  HL          +AK + F+ L  T    +N 
Sbjct: 179 EVSSHAVVQERIAGLHFTGAAFTNISHDHLDFHETFANYINAKKQFFDQLPPTAFALINA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T  +F   + ADF+ R  +   +  +ME+       +++   
Sbjct: 239 DDKRGMVMLQNTVAK---TQRTFALKQFADFKARVVESSLQGLFMEIDDVEVWFQMI--- 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N    LGI +I     +   + L++    +    R+   + +   T + + Y+
Sbjct: 293 ----GYFNAYNLLGIYAIAVLLGEDTTETLTLLSGLQSVPGRFEKIIGESGATGVVD-YS 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  + ++   G+     V       G    +    +   ++      V  +
Sbjct: 348 HTPDALENVLQTIFELRQSGQKIITVV-----GCGGNRDASKRPIMAQIACQYSDVVIFT 402

Query: 408 GFHVL---------ALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +++   +          +               D+++V  K 
Sbjct: 403 SDNPRNEPPMQILEDMQEGVSIDDEPKTSLIASRKDAIRKACELAQKQDIILVAGKG 459


>gi|110598574|ref|ZP_01386842.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339808|gb|EAT58315.1| UDP-N-acetylmuramyl-tripeptide synthetases [Chlorobium ferrooxidans
           DSM 13031]
          Length = 521

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 151/477 (31%), Gaps = 40/477 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQG--FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              LL  I    +    +    V  ++ DSR + P   F A++G   DGH FI  AV++G
Sbjct: 15  LEKLLGGISALELRGNRELAGEVTCVTSDSREVIPGALFVAVRGYCTDGHRFIRSAVERG 74

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           AG V+     + S     +    V D   AL + A         +  II +TG+ GKTTT
Sbjct: 75  AGSVICEE--IPSGIEDGVLFIKVTDARIALAEAARLYYGNASDQLMIIGVTGTNGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFEL 167
            +++T  L++   +   IG+                    G+     RM       +  +
Sbjct: 133 SKLITSMLNARGISCGYIGTNLCTFAEREIPLDRTTPEAHGLHALFRRMVDGGCRAVV-M 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    +    H +R   AV T + P HL     +E  ASAK  +F+ L   G   LN 
Sbjct: 192 EVSSHALMLKRVHGIRFRAAVFTNLTPEHLDFHETMEAYASAKQLLFDQLTPDGFAVLNR 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM--EVQLQGKSMEVVH 285
           DD     + A+     I       +   +      +      + +            VV 
Sbjct: 252 DDPAAPFMAARVLPEKIYCCSLSARQDTSLACGNSFFAEITGASIASSRVALHFPETVVS 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +    + N++  L   S+         +             R           +    
Sbjct: 312 IEVRLPGSFNVMNMLEAASVGFGLGLDPDEICRALSLVSAVEGRMERVGESCSGGMAFVD 371

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +S L  +        I V G     G             ++      V 
Sbjct: 372 YAHTPDALFKVLSTLRDLKDEHSR-LIVVFG----CGGNRDRSKRPEMGRIASELADEVI 426

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            ++  + R                  S +  GDV++V  K 
Sbjct: 427 ITSDNPRDEDPEAILDEIEQGMNRDGRYRRIIDRAEAISVAVSMIGKGDVLLVAGKG 483


>gi|49475860|ref|YP_033901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
 gi|49238668|emb|CAF27914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bartonella henselae str. Houston-1]
          Length = 483

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/453 (18%), Positives = 152/453 (33%), Gaps = 35/453 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    + GIS DSR I P   F A++G   DG  +I  A+++GA  +V + ++V  + +
Sbjct: 15  NLSSMEITGISADSRQILPGYIFVALQGHQDDGKHYINDALKRGAQAIVTDCNVV--LEN 72

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           LS+P+  V D   +L   A         T++A+TG+ GKT+    L    + +    A I
Sbjct: 73  LSVPLLRVLDARHSLAVAAARFYGSQPETVVAVTGTSGKTSVVSFLRQIWTKVGLCAASI 132

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186
           G+             +       +                L  S  G  +     VR   
Sbjct: 133 GTLGVVSPKRNDYGSLTTPDPVFLQRLLSEIANEGVTHAALEASSHGLDQCRLDGVRLTA 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   H+   + +E+   AK  +F+ L       L + D  +      +     + 
Sbjct: 193 AAFTNLGRDHMDYHTSVEDYLRAKMRLFDTLLPRDASALIFADDIYSQKVIDTLTQARRH 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+       + + +    +  +E +L+           G     N LM  G+    
Sbjct: 253 VLTIGRKGQF-ITINRIEHQRSKQCVECRLENNIYTFNLPLAGDFQVNNALMAAGLAIST 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D   ++L       GR +      N      ID ++            VL  + P 
Sbjct: 312 GISPDKVFRSLETLQGAPGRLELVGKTENNA-SVYIDYAHKPEALE-----QVLLSVRPF 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPR 420
            +GR I V G     G         L   ++      V ++  +          KD L  
Sbjct: 366 TQGRLILVFG----CGGDRDQGKRPLMGKIAENKADIVIITDDNPRTEMPAKIRKDILQA 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +              +    L  GD +++  K 
Sbjct: 422 APKAIEIADRGEAITYAVGLLKAGDTLIIAGKG 454


>gi|333027606|ref|ZP_08455670.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
 gi|332747458|gb|EGJ77899.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           sp. Tu6071]
          Length = 487

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 156/476 (32%), Gaps = 53/476 (11%)

Query: 10  LLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L   + GH    +       V GI+ DSR +     F A+ G   DGH  +  AV++GA 
Sbjct: 3   LAALLAGHPHDLLQGDADTDVTGIATDSRQVRSGFLFVAVPGRRVDGHAHLEQAVEQGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
             +V+T   A     ++ +  V+    A +  A            +++ITG+ GKT+T  
Sbjct: 63  AALVST--TAHPLPSALTIARVESTPVAASLAASRLHGEPGRRMRVVSITGTNGKTSTAA 120

Query: 125 MLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFE---------------- 166
           ML   ++++      +         G+P+ L          +                  
Sbjct: 121 MLESVIAALSTAPVGVIGTGGPRVDGIPVPLKTTTPTTPQAVELQPILRYMADQGAGTVV 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S L   +         I V T ++P HL +   ++   +AK  +F G+       +N
Sbjct: 181 MEASSLALWQHRLDHAFTDIGVFTNLSPDHLDDHGTMDAYKAAKLLLFSGMS--SDAVVN 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   + +  +          +FG  K ADF  R ++  +  +   +   G+       
Sbjct: 239 TDDPVSQEILERM-----PRATTFGMDKTADFTARAFEVSATGTRFLLVHDGQEYPAHLP 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  + +   L  +   A+ AL       GR +  R A             
Sbjct: 294 IPGRFNVANALAAVAVCHRLGYETKAALHALETLPQIPGRMETLRRADGTSIVVDYA--- 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                S  +    L  +     GR + V G     G+   S  I +  +    +   V  
Sbjct: 351 ----HSADSLEKTLRTLREVSSGRLLTVFG---CGGDRDASKRIPMGSLAGHLSDHVVIT 403

Query: 407 SG----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + +A+ R +                     S    GD V+V  K 
Sbjct: 404 SDNPRTEDPETIINAVERGVRTTDTPYDRITDRRAAIARALSLAEPGDTVLVAGKG 459


>gi|303258241|ref|ZP_07344248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
 gi|302858994|gb|EFL82078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderiales bacterium 1_1_47]
          Length = 488

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 151/445 (33%), Gaps = 38/445 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + FFA+KG H DG  FI  A   GA  VV        IG  S+PV  +D++ 
Sbjct: 24  DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNLY 80

Query: 93  GALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGV 149
            AL  +A A    S A +I I  TG+ GKTTT   +   ++ +     +         G+
Sbjct: 81  RALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNGI 140

Query: 150 PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L    M                      F +  S +G  +          AV T +   
Sbjct: 141 VLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTRD 200

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E    AK  +F        +     +   +++K    A       S    + 
Sbjct: 201 HLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKGDQP 260

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A       +   E    EV+ +G +  V  H +G    +N L T+G +  +  +++T +K
Sbjct: 261 AYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETVLK 320

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            ++   P  GR +  R      F       Y+  P ++  AI  L  ++    GR   V+
Sbjct: 321 EVAKLMPPAGRMQIVRDDHGPIFAVD----YSHTPDAVTQAIKALEGLAEARGGRIWIVV 376

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS--IHVHYSE 428
           G     G         L    +      V L+           +   +           E
Sbjct: 377 GA----GGDRDHGKRPLMGQAA-CAADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        DV++V  K 
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKG 456


>gi|167754792|ref|ZP_02426919.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
 gi|167705624|gb|EDS20203.1| hypothetical protein CLORAM_00296 [Clostridium ramosum DSM 1402]
          Length = 488

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 99/460 (21%), Positives = 169/460 (36%), Gaps = 40/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                     +  I  DSR + P   FF I+G   DGH ++  AV +GA ++V + D+  
Sbjct: 6   ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKDLNY 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I  F V++ L  LN+++        +K  II +TGS GKT    M+  A++   
Sbjct: 66  YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYC 123

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181
            +         + G          +  +              +  +  S  G        
Sbjct: 124 SSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDG 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  +IAV+T I   HL      E+   AK ++FE ++ TG   LN DD  F  LK  +  
Sbjct: 184 INFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I ++G    +D   +  +   + S  ++  +G +  V    I      N+L   G
Sbjct: 244 ----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTG 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  +  D    I A+    P EGR +  +            +       S   AI    
Sbjct: 300 VLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVIIDYCQ-----HISNYEAIFEYV 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
                G GR IAVLG     G+ +     +L ++ + Y + HV L+     G  V  +  
Sbjct: 355 DGVRQGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEICK 410

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + +    I+    E+               D++++  K 
Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKG 450


>gi|319654397|ref|ZP_08008484.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
 gi|317393896|gb|EFV74647.1| hypothetical protein HMPREF1013_05104 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 165/476 (34%), Gaps = 50/476 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T   +       S+       VN I   SR++   + F AIKG  +DGH+FI  A
Sbjct: 1   MK-LKTL--ISDITN--SLEYASDIEVNRIQFKSRNVKKGDIFVAIKGLKHDGHNFINEA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
           +  GA  VV   +       L +P   V D   AL  LA            +I ITG+ G
Sbjct: 56  ISNGAVAVVGEAEYDC----LPVPYIKVQDARQALGNLAKTLYCDPSKMHNMIGITGTNG 111

Query: 119 KTTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLT---LARMPVDVDFGIFE 166
           KTTT  M+     +  ++                 +    P        + + +D  +  
Sbjct: 112 KTTTAYMVKHIFQTASESCSLFSTVSNFVNGTELMSTATTPDILELNKMLRMSMDKNVV- 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +     +  +  + T +   HL     +EE  + KA +F+ L+K G   +N
Sbjct: 171 MEVSSHGLHQKRVEGIEFNYGIFTNLTHDHLDYHQNMEEYFNTKAGLFKLLKKNGEAIIN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               +   L  +      +++ SFG S+N D QL   K     S + +Q     +E+   
Sbjct: 231 SGCPWGRKLINQ-LKNKRQSVLSFGTSENDDLQLLSTK--DGVSKIRIQGSNVKLEIKMP 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  QN L  +        +V+   +A+  F    G     R              Y
Sbjct: 288 MPGNHNLQNALAAILCAYRAGVNVNDIKRAVESFPGVPG-----RFEEYYSQSVNFILDY 342

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  ++  +  + ++      R + V G                   +S      + L
Sbjct: 343 AHTPDGLENLLETVKKL---NGNRIVHVFGFRG----NKDMTKRLAMLDISAKYCDKIIL 395

Query: 407 S-----GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     G  +  +   L +S+      ++H          +   + + GD +V+  
Sbjct: 396 TLDDLNGVALEKMILDLKKSVNYIGTNNIHLIIDRTRAIEYAWKNSIKGDRIVITG 451


>gi|218131852|ref|ZP_03460656.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|317474533|ref|ZP_07933807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986155|gb|EEC52494.1| hypothetical protein BACEGG_03474 [Bacteroides eggerthii DSM 20697]
 gi|316909214|gb|EFV30894.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacteroides eggerthii
           1_2_48FAA]
          Length = 482

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 169/476 (35%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ IQ   +    +  + G++IDSR +A    F A++G   DGH +I  A++KG
Sbjct: 1   MKLSELLKTIQPVQVTGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +    + +I    V D   A+ K+A A      SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLCED--MPEEPTPNITYIQVKDSENAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRHFGYKVGLISTVCNYIDDRAIPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKILESHFEG----MLLDFNNRELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNAYNLLAVFGAAVLLGKKEEDVLIALSTLHPVAGRFDSIRSPKGITAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++ 
Sbjct: 347 TPDALVNVLNAIHDV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV+++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRKEAIKTAYMLAQPGDVILIAGKG 457


>gi|269798178|ref|YP_003312078.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
 gi|269094807|gb|ACZ24798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Veillonella parvula DSM
           2008]
          Length = 494

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 144/481 (29%), Gaps = 47/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +    +       +  ++ DSR++     F A+ G   DGH+++  AV+ 
Sbjct: 1   MKQLQDIVKTLHAPHVEGNTAVEILDVTADSRAVKAGSLFIALDGATVDGHNYVNKAVES 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+V+  +     S  + V  V+D   A+                +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEV---SSDVCVITVEDTRAAMMSCVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T  M+   L +       IG+ +  IG            V      +   V+ G+    +
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
            +S           V    AV T +   HL      E    A  K               
Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQIKSGK 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +    +        I ++    +            + S   V   G    V  
Sbjct: 238 GAVINIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAM 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L  +G   +    ++   KAL  F    GR +                +
Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHT 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          ++L       E R I V G     G    +    +   ++      V+
Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVY 406

Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           ++  +                +KD L    H                +   GD+V++  K
Sbjct: 407 VTSDNPRTEDPIQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|331001077|ref|ZP_08324708.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569382|gb|EGG51160.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 488

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 150/445 (33%), Gaps = 38/445 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR I   + FFA+KG H DG  FI  A   GA  VV        IG  S+PV  +D++ 
Sbjct: 24  DSRKIRKGDVFFAVKGVHTDGRAFIEKACGAGASCVVAEK---GDIGPCSVPVIEIDNLY 80

Query: 93  GALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGV 149
            AL  +A A    S A +I I  TG+ GKTTT   +   ++ +     +         G+
Sbjct: 81  RALGPIAAAYYGNSTAQMIGIAVTGTNGKTTTANWIADLMNRLGTPCASIGTLGCTLNGI 140

Query: 150 PLTLARMPVDVD--------------FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            L    M                      F +  S +G  +          AV T +   
Sbjct: 141 VLPSVSMTTPDPLTLQAKFAELLSRGCKAFAMEASSIGLEQGRLDGTEIKTAVFTNLTRD 200

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E    AK  +F        +     +   +++K    A       S    + 
Sbjct: 201 HLDYHGTMENYLRAKEILFRWPTVASAVINQSGEPAQQIMKTAEGAGKAILTVSAKGDQP 260

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A       +   E    EV+ +G +  V  H +G    +N L T+G +  +  +++T +K
Sbjct: 261 AYLSAENIRHTREGLEFEVRFKGNTFPVAAHFLGLFNVENFLCTVGAMISVGFEIETVLK 320

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +   P  GR +  R      F       Y+  P ++  AI  L  ++    GR   V+
Sbjct: 321 EAAKLMPPAGRMQIVRDDHGPIFAVD----YSHTPDAVTQAIKALEGLAEARGGRIWIVV 376

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS--IHVHYSE 428
           G     G         L    +      V L+           +   +           E
Sbjct: 377 GA----GGDRDHGKRPLMGQAA-CAADEVVLTSDNPRSEDAKEILKQIQAGTTKPCTVIE 431

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        DV++V  K 
Sbjct: 432 DRRKAIEYAAEHAAADDVILVAGKG 456


>gi|238019061|ref|ZP_04599487.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
 gi|237864316|gb|EEP65606.1| hypothetical protein VEIDISOL_00923 [Veillonella dispar ATCC 17748]
          Length = 494

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 144/481 (29%), Gaps = 47/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+++ +Q   I       V  I+ DSR++     F A+ G   DGH+++  AV+ 
Sbjct: 1   MKQLQDIVKTLQTPHIEGNTAVEVLDITADSRAVKAGSLFIALDGATVDGHNYVNKAVEA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+V+  +     S  + V  V+D   A+                +I +TG+ GKTT
Sbjct: 61  GAVAVLVSKPVEV---SGDVCVITVEDTRKAMMACVPYFFDYPANSMRMIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T  M+   L         IG+ +  IG            V      +   V+ G+    +
Sbjct: 118 TTHMIRHILKGQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
            +S           V    AV T +   HL      E    A  K               
Sbjct: 178 EVSSHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAPNQTKSGK 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +    +        I ++             +   + S   V   G    V  
Sbjct: 238 GAIINIDDEYGHRVIEKTTAPIITYSIDGKGTLNAHDVEMTPKSSRYTVSYDGNDYTVAM 297

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G     N L  +G   +    ++   KA+  F    GR +                +
Sbjct: 298 NTTGLFNVYNTLAAIGACLLEGISMEDIDKAMKTFSAVPGRFELIEEGQPFAVVVDYAHT 357

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          ++L       E R I V G     G    +    +   ++      V+
Sbjct: 358 PDG-------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDIVY 406

Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           ++  +                +K+ L    H                +   GD+V++  K
Sbjct: 407 VTSDNPRTEDPVQIVKDVEVGVKEGLREGSHYEVIVDRREAIQHAIQNAKPGDIVLIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|326334989|ref|ZP_08201189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692794|gb|EGD34733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 485

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/496 (17%), Positives = 155/496 (31%), Gaps = 59/496 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L + ++   I    +  +  I+ +S+ I     FFAIKG + DGH FI  A++K
Sbjct: 1   MKTIKQLCKGVKILQIVGNEEVNIENITQNSQEITTGTLFFAIKGANRDGHTFISEAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
            A ++V     +  I    +    V D   A+ ++A         K  ++ +TG+ GKTT
Sbjct: 61  KARVIVCQQ--LPEILPKEVTFLKVADSTIAMAQIAANYFDHPSQKLKLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGI--FEL 167
              +L     + K                 I + N    V     RM   V+ G+    +
Sbjct: 119 IATLLYHLFRNTKHKVGLISTIAIYINEQKIDTKNTTPDVITLNRRMHQMVEEGVTHCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G        +     + T +   HL       E  + K + F+ L+K      N 
Sbjct: 179 EVSSHGIAMHRIEGLSFAGGIFTNLTQDHLDFHKTFAEYRNTKKKFFDTLKKDAFALTNI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A                          E ++  + L+    E+  H 
Sbjct: 239 DDKNGNFMLQNTQAHKYNYALR--------TYADFKANILENAFSGLVLRIGQQEIWTHL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L       +L  D +   K +S   P  GR + +  A N          Y 
Sbjct: 291 IGQFNAYNLLAIYATAVLLGMDKEEVAKQISELKPVSGRFQYFISAGNITVIVD----YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  I    +     V       G         +   ++      V  +
Sbjct: 347 HTPDALQNVLETIKSIKAPSQHLLTLV-----GCGGNRDKGKRPIMANIATTMSDKVIFT 401

Query: 408 -----GFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVV-------- 448
                      +   +   ++  +                  +    GD+++        
Sbjct: 402 SDNPREEDPQTILKEMEIGVNPDHQSKYMTITDRRQAIKVACNLAHAGDIILLAGKGHET 461

Query: 449 ---VKS--SNSCGFYR 459
              VK   S+      
Sbjct: 462 YQEVKGHRSHFDDLEE 477


>gi|254302924|ref|ZP_04970282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323116|gb|EDK88366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 485

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 155/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFIAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V+D+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLVEDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134

Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V               +    +   +++ + E+    L   R    +V    A
Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHITMENYFQAKRKLFLKLKDINNSVINIDDKYGKRLYDEFIIDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + +          +  +++++ + +  +V    +G     N L  +GIV  + 
Sbjct: 253 SYGIDGGDLEG------DYLDDGYIDIKYKNQIEKVKFALLGDFNLYNTLGAIGIVLKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +    +      V L+  +            +K   
Sbjct: 361 GNRIITIFG----CGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFDDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYFFEPDREKAIKLAINIAEKNDIILITG 449


>gi|89099604|ref|ZP_01172479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89085757|gb|EAR64883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 153/453 (33%), Gaps = 48/453 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  DSR +     F  I+G   DGH +   AVQ GA  V+   ++     SL++PV  V
Sbjct: 2   SLENDSRQVKKGSLFICIEGFTVDGHHYAETAVQNGAAAVLAEREL-----SLNVPVIIV 56

Query: 89  DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI---------KKTY 137
            D   A+  LA A   +      +I ITG+ GKTTT  ++   L+             T 
Sbjct: 57  KDTARAMAVLADAFYGQPSQQLHLIGITGTNGKTTTSHLIEKILADAGKSTGLIGTMYTK 116

Query: 138 ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +       P          + +   V+  + E+  S         H    ++AV T
Sbjct: 117 VAGETLETKNTTPESLTLQKTFASMVEKKVEAAVMEV--SSHALDEGRVHGCDFNVAVFT 174

Query: 191 TIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            +   HL     ++E   A        G             +  +   A+        I 
Sbjct: 175 NLTQDHLDYHKTMDEYRRAKGLLFAQLGSAFYHNKPKYAVLNADDPASAEYRKSTAAQIL 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++     AD +    +  +  +  ++        V    IG     N+L  +G       
Sbjct: 235 TYAIDNEADLRAVHIQMDARGTSFDLVSPFGVHPVAMQLIGKFSVYNVLAAIGAALASGL 294

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           +++  ++++S      GR +      +          Y   P S++ A+  + + +   E
Sbjct: 295 ELEAILESISTVKGVPGRFETVDAGQDFSVIVD----YAHTPDSLENALETVKEFA---E 347

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPR 420
           GR   V+G     G+  ++    +A++        V+ S           +  +   +P 
Sbjct: 348 GRIFVVVG---CGGDRDRTKRPLMAKIACGLATDAVFTSDNPRSEDPEEILKDMAAGVPE 404

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   +        +   +   GDV+++  K 
Sbjct: 405 GNYTMIA-DRKEAIAYSVGAAGKGDVILIAGKG 436


>gi|15615134|ref|NP_243437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus halodurans C-125]
 gi|20139211|sp|Q9K9S4|MURE_BACHD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|10175191|dbj|BAB06290.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus halodurans C-125]
          Length = 486

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 89/492 (18%), Positives = 158/492 (32%), Gaps = 64/492 (13%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                P   ++ I +DSR +     FF IKG   DGHD+   AV  GA  VV    +   
Sbjct: 17  IHEGNPD--IHSIHMDSREVVEGGLFFCIKGYTVDGHDYAQQAVSNGAVAVVSERPL--- 71

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
              LS+PV  V D   A+ ++A            +I +TG+ GKTT   ++   +    K
Sbjct: 72  --ELSVPVVVVRDSRRAMAQVATKFYGEPTNDLQLIGVTGTNGKTTITHLIEKIMQDQGK 129

Query: 136 TYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IG+    IG                                + +S           
Sbjct: 130 MTGLIGTMYTKIGHELKETKNTTPESLVLQRTFADMKKSGVTTAMMEVSSHALQSGRVRG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +AV + + P HL     +E    AK           +     LN DD         
Sbjct: 190 CDFDVAVFSNLTPDHLDYHGTMERYKFAKGLLFAQLGNTYQGKVAVLNADDPASADFAEM 249

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A  +    ++G    ADFQ    +  S  +  E+    + ME+  H IG     N+L 
Sbjct: 250 TIAQVV----TYGIENEADFQAENVRITSTGTTFELAAFEERMELSIHLIGKFSVYNVLA 305

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +    +    K+L       GR   +    +   FT+I + Y   P S++  + 
Sbjct: 306 AAAAAYVSGVPLQEIKKSLEEVKGVAGR---FETVKHDQPFTVIVD-YAHTPDSLENVLK 361

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------- 411
            + +++   +G    V+G     G         +   ++    +    +  +        
Sbjct: 362 TVGELA---KGDVRVVVG----CGGDRDKTKRPVMAEIATTFANQAIFTSDNPRSEEPMD 414

Query: 412 --LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------SNSCGF-Y 458
               ++       ++   E              + D++V+  K           +  F  
Sbjct: 415 ILRDMEQGAKGDSYLMI-EDRKEAIFKAIELAKEDDIIVIAGKGHETYQQFRDRTIDFDD 473

Query: 459 RLI--NLLLEEF 468
           R++    + E +
Sbjct: 474 RIVAQQAIKERW 485


>gi|291514758|emb|CBK63968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelat e ligase
           [Alistipes shahii WAL 8301]
          Length = 484

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 167/474 (35%), Gaps = 44/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L+      +       + G+  DSR++ P + FFA+ G   DGHD+I  AV+K
Sbjct: 1   MKKLTDILKNTPVREVCGDTAAAIGGLVYDSRAVKPGDCFFAVPGTQSDGHDYIPIAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  +V     + +  +  +    V D  GA+  +A A          ++ ITG+ GKTT
Sbjct: 61  GAAAIVCER--MPADAAEGVAYVLVGDSAGAMADMAAAFYDYPSRELKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167
           T  +L   + ++                         P       + R   D       +
Sbjct: 119 TATLLYDLVRAMGYKAGLISTVVYKIDGREVEATHTTPDSIRLNAMMREMADAGCAYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++  T  +     + + I   HL       E   AK   F+GL K      N 
Sbjct: 179 ECSSHAIVQERTRGLDFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDGLPKGAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A        +     ADF+ +  +   +   + +  Q          
Sbjct: 239 DDRNGRVMVQNTAAAVSA----YSLRAMADFRCKIVEMHLDGMLLRIDGQELW----VGL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G  ++L  +    ++ LS+ H   GR ++ R A      T     Y 
Sbjct: 291 LGRFNAYNLLAVYGAAALLGLNRGEVLRVLSMLHAVSGRFEKIRAANG----TTAIVDYA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  I  + +I     G+++ V+      G+  ++   ++A +   Y  + V+ S
Sbjct: 347 HTPDALENVIQTIEEIR--TPGQQLIVVCGCG--GDRDRTKRPEMAAIAVKYATTAVFTS 402

Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D     L                         GD+++V  K 
Sbjct: 403 DNPRHESPEAILDDMVAGLEPGARYLRIADRAEAIRTAVMLSRPGDIILVAGKG 456


>gi|270295453|ref|ZP_06201654.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274700|gb|EFA20561.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 482

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLLQ IQ   I       + G++IDSR I     F A++G   DGH +I  A+ KG
Sbjct: 1   MRLSDLLQTIQPVRITGSTSMEITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +       I    V D   A+ K+A        SK  +I +TG+ GKTT 
Sbjct: 61  AVAVLCEE--LPEELKAGITYIQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y + + VP                   D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLVSTVCNYIDDLPVPTEHTTPDPITLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTRS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNAYNLLAVFGTAVLLGKKEEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    S      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 457


>gi|315647855|ref|ZP_07900956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315276501|gb|EFU39844.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 502

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 145/478 (30%), Gaps = 42/478 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + +   +I       +  +  DSR+I P   F  + G + DGHD+I HA+Q G
Sbjct: 1   MNLKSLTERLILKTITGSTAVEITNLDTDSRAIRPGGLFVCVPGFNVDGHDYIEHAIQNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++   ++    G  +I    V D    L  LA +       +  +I ITG+ GKTTT
Sbjct: 61  AVAIMAEKELPELPG--NITRITVPDTRRVLPILANSFFGNPTEQLKLIGITGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELG 168
             M+   L+   +    IG+    IG                       V        L 
Sbjct: 119 THMVDKVLNDSNRKTGIIGTLYMKIGDHVEKTLNTTPDTIQLQRYFHAMVAHGGTYGVLE 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G              V T ++  HL     +E   + K  +F  L  +        
Sbjct: 179 VSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQNMESYRNTKELLFTQLGNSDRDMQKKV 238

Query: 229 DSFFELLKAKSH-ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
               +   +  +       I ++G    AD +    +   +     V+    S +     
Sbjct: 239 VLNADDAASSYYGKRTSAQIVTYGIHNPADVRALHIQNTGDGCRFIVETPWGSSDFTMKV 298

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +    +    +     +L  F    GR        ++ F  ++D ++N
Sbjct: 299 YGVHNVYNALAAITTCLLEGIPIQEIRNSLQDFAGVHGR--FQEIKTDRSFRVVVDYAHN 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            +        + L        G+ I V+G   E           +   ++     +V   
Sbjct: 357 PDG-----LKATLLSAKEITSGKMICVMGCRGE----RDRLKRPIMADIAASYSDYVLFT 407

Query: 407 ----SGFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                      +   +   +  H+                      D D +++     
Sbjct: 408 TDNPFSEDPEQIIAEMLGGLSSHHAVNWEVVPNRKDAIQRAVEMAGDQDRIIITG-RG 464


>gi|288800558|ref|ZP_06406016.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332771|gb|EFC71251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 484

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 154/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L+ +I+   I       + G++IDSR I     F A+KG   DGH +I  A++KGA 
Sbjct: 3   ISKLISSIKPIEIIGDANKEIVGVNIDSRKIEANHLFIAVKGTQVDGHRYIETAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+     +  + +  +    V D   A   +A          +  + +TG+ GKTT   
Sbjct: 63  AVLCED--LPEVKAPHVTYIQVQDTTQAAGVVATIFYGEPSKKVKLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + +Y     VP                  V+       +  S
Sbjct: 121 LLYNLFRKLGYKCGLLSTVCNYIEDEAVPADHTTPDPIALNYLLSRMVEAGCDYVFMECS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL      E    AK   F+ L KT     N DD 
Sbjct: 181 SHAIAQKRIAGLHFAGGIFTNLTRDHLDYHKTFENYRDAKKAFFDSLPKTSFAITNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A    T+ ++     ADF+ R  +   E     + L+    EV    IG 
Sbjct: 241 NGMYMVQNTKA----TVKTYSARSLADFKARIIECHFEG----MYLEIDGREVGVRFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L   G   +L    +  + ALS      GR +                + +A  
Sbjct: 293 FNVSNLLAVYGASVMLQQQPENILLALSTLQSVSGRLEPIYSPEGFTCIVDYAHTPDALE 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             + A   VL     +G+G+ I V G     G         L    ++     V L+  +
Sbjct: 353 NVLLAIHDVL-----NGKGKVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVILTSDN 403

Query: 411 VL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +K+ L  +                   S    GDVV+V  K 
Sbjct: 404 PRFEDPQDILNDMKEGLNNAQLKKTLTIVDRKEAIRTACSLAQKGDVVLVAGKG 457


>gi|313200237|ref|YP_004038895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
 gi|312439553|gb|ADQ83659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. MP688]
          Length = 477

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 159/480 (33%), Gaps = 60/480 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L + HDL         GI P    + ++ DSR +     F A  G   DG  +I  A
Sbjct: 1   MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +  GAG V+   +  +    L      V D+     ++A            ++ +TG+ G
Sbjct: 48  IANGAGAVLWEAEGFSWPTDLQAVNLPVKDLRKQAGEIADEFYGHPSRALWMVGVTGTNG 107

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164
           KT+  + LT  L+S+++  A IG+  N  G P  LA         I              
Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGA 165

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G  +   + V   +AV T +   HL     ++  A+AK  + E       
Sbjct: 166 VATAMEVSSHGLDQGRVNGVHFDVAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLKLA 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      L+A                ++ D              M V      + 
Sbjct: 226 VLNAEDAYGLTFLQA---LRSEGRPVLSYGMQSGDVHSTSLHLHETGMQMSVTTPWGDVT 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G   A N+L  L  +  +   ++ A +A++   P  GR    +   N     +I
Sbjct: 283 LQASVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGR--MEQYGGNAMPVVVI 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +        + L  +     G+   V G     G    +    +   ++     
Sbjct: 341 DYAHTPDALE-----NALQALREQTRGKLWCVFG----CGGDRDAGKRPMMGAIASRLAD 391

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV ++  +            +  ++ R+  +                   GD+V+V  K 
Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMV--DRRAAIAHAIEQAAPGDIVLVAGKG 449


>gi|294674968|ref|YP_003575584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
 gi|294472220|gb|ADE81609.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prevotella ruminicola 23]
          Length = 483

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/476 (15%), Positives = 154/476 (32%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ ++  +        + G++IDSR I     F AI G   DGH FI  A++ G
Sbjct: 1   MKLNELLKNVEVLNTQGDVDVEITGVNIDSRRIEAGHLFVAIPGTVTDGHKFIPKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +       +    V      + ++A         K  ++ +TG+ GKTT 
Sbjct: 61  ATAVLCEK--LPEEQDPKVTFVQVASTESCVGEVATQFYGDPSRKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y     +P                  VD       + 
Sbjct: 119 ATLLYNMFRKFGHKCGLLSTVCNYIEDEAIPADHTTPDPIELNRLLAQMVDAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++    + T +   HL      E    AK   F+GLEK      N D
Sbjct: 179 CSSHAIAQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRDAKKAFFDGLEKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++     A     + ++     ADF+ +  +   E  ++++  +   ++ +    
Sbjct: 239 DKNGMVMVQNCKA----NVKTYSTRTMADFKAKIIECHFEGMYLDINGKEVGVQFIGKFN 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++       + +              L +    +    R     +   +T I + Y  
Sbjct: 295 VSNLLAVYGAAVMLGK-------KPEDILLIMSTLKSVNGRLEPIHSPEGYTAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ + ++  +G+G+ I V G     G         +    ++     V ++ 
Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCGA----GGNRDKGKRPIMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                   GDV+++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDQKQMKKVVSIVDRREAIRTACMLAEKGDVILIAGKG 457


>gi|282880608|ref|ZP_06289314.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
 gi|281305503|gb|EFA97557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Prevotella timonensis CRIS 5C-B1]
          Length = 483

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 153/474 (32%), Gaps = 51/474 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++L++ I+   I       ++G++IDSR I P   F AIKG   DGH++I  A+  GA  
Sbjct: 4   NELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLGAVA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           V+        +    I    V     A+ K+A            +I +TG+ GKTT   +
Sbjct: 64  VLCEKAPKEPL--SDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTTIATL 121

Query: 126 LTIALSSIKKTY---ACIGSYNNHIGVPLTLA------------RMPVDVDFGIFELGMS 170
           L      +       + + +Y     +P                +M       +F    S
Sbjct: 122 LYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECSS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H    +     +     + T +   HL      E   +AK   F+ L K+     N DD 
Sbjct: 182 HA-IAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A    T+ ++     ADF+ R  +   +     + L+    EV    IG 
Sbjct: 241 NGMVMVQNTKA----TVKTYSVRTAADFKARIIECHFQG----MYLEIDGQEVGVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L       +L    +  + A+S  H   GR                  + +A  
Sbjct: 293 FNVSNLLAVYATARMLGKQREEILIAMSTLHSVNGRMDTLHSPQGFTAVVDYAHTPDALK 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   +L+     G+G  I V G     G         L    ++     V ++  +
Sbjct: 353 ------NVLLAIHEVDGKGHVITVCGA----GGNRDKGKRPLMAKQAVQLSDKVIITSDN 402

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L          V                    DVV+V  K 
Sbjct: 403 PRFEEPQDIINDMLAGLDAQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKG 456


>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
 gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
           tripeptide:D-alanyl-D-alanine ligase/alanine racemase
           [Waddlia chondrophila WSU 86-1044]
          Length = 813

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/448 (20%), Positives = 160/448 (35%), Gaps = 31/448 (6%)

Query: 9   DLLQAIQGHSIGIVPQGF--VNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGA 65
           DL       S G        ++ I ID+R I A    F A+KG   DGH F+      GA
Sbjct: 5   DLRNWSGFISAGGDSNRPALIDQIVIDTRRIYASNALFAALKGQRQDGHSFVS---GSGA 61

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              +V           S+    VDD L A  ++A + R + +  +IA+ GS GKT  K++
Sbjct: 62  KFALVEKHWEGPADGPSL--LKVDDPLTAFQEIAGSYRSQLRGNVIAVIGSYGKTMVKDL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   LSS     +   S+N+ +GVPL+L       +  I E G SH GE+  L  ++RP 
Sbjct: 120 LRHLLSSSFTVASSPESFNSQVGVPLSLLGAAKAHEQVIIEAGFSHPGEMARLCKIIRPS 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++T +   HL      E+IA                F    D+ + LL        + 
Sbjct: 180 HIILTHVGNKHLHTIGSKEQIAQE-----------MCHFSLSSDASWTLLPKDPILSPLP 228

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y +   +         +     +    +    ++             N+   L    +
Sbjct: 229 KPYYWDTPQPNLPHASFHENSKAITVQFPKGDAHTILRPLGMSYILDLINIG--LKAAYL 286

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L       + AL  + P            +Q   T I+E+Y  +P S+  A+      SP
Sbjct: 287 LGVPEKQIVDALKTYQP---EPMSTEIWKSQNGATFINETYCEDPQSLDCALRRFDFHSP 343

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSIH 423
              G++  +   + +      +    + E +       + L             +     
Sbjct: 344 K--GKKTLLFSGIKQ---NDPALDARIGEAIGNSMPDTLMLIEPSFQLEHAVKTIAPQTA 398

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + +  T++        S+   D+++VK 
Sbjct: 399 IRHFSTVEAALKDHAGSMRPEDILIVKG 426


>gi|253998167|ref|YP_003050230.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
 gi|253984846|gb|ACT49703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylovorus sp. SIP3-4]
          Length = 477

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 159/480 (33%), Gaps = 60/480 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L + HDL         GI P    + ++ DSR +     F A  G   DG  +I  A
Sbjct: 1   MTILASLHDL---------GIRP----SSLTSDSRKVTAGSLFVAYPGDAADGRAYIPQA 47

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +  GAG V+   +  +    L      V D+     ++A            ++ +TG+ G
Sbjct: 48  IANGAGAVLWEAEGFSWPADLQAVNLPVKDLRKQAGEIADEFYGHPSSALWMVGVTGTNG 107

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164
           KT+  + LT  L+S+++  A IG+  N  G P  LA         I              
Sbjct: 108 KTSCTQWLTHCLNSLQRKTAVIGTLGN--GFPGELATAINTTPDPIVLHGLLAEYLKQGA 165

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G  +   + V   IAV T +   HL     ++  A+AK  + E       
Sbjct: 166 VATAMEVSSHGLDQGRVNGVHFDIAVFTNLTRDHLDYHGDMDSYAAAKRRLMEWPGLKLA 225

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      L+A                ++ D              + V      + 
Sbjct: 226 VLNAEDAYGLTFLQA---LRSEGRPVLSYGMQSGDVHCTSLHLHETGMQLSVTTPWGDVT 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G   A N+L  L  +  +   ++ A +A++   P  GR    +   N     +I
Sbjct: 283 LHAAVMGRFNAYNLLAVLATLLAMDVPLEAAAQAIATLKPVPGR--MEQYGGNAMPVVVI 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +        + L  +     G+   V G     G    +    +   ++     
Sbjct: 341 DYAHTPDALE-----NALQALREQTRGKLWCVFG----CGGDRDAGKRPMMGAIASRLAD 391

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV ++  +            +  ++ R+  +                   GD+V+V  K 
Sbjct: 392 HVVVTSDNPRSENPDTIIADITASMGRNHQIMV--DRRAAIAHAIEQAAPGDIVLVAGKG 449


>gi|294792045|ref|ZP_06757193.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
 gi|294457275|gb|EFG25637.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Veillonella sp. 6_1_27]
          Length = 496

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+++ +    +       +  ++ DSR++     F A+ G   DGHD++  AV+ GA 
Sbjct: 6   LQDIVKTLHAPHVEGNTAVEILDVTADSRAVKEGSLFIALDGATVDGHDYVNKAVEAGAV 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+V+  +     S  + V  V+D   A+                +I +TG+ GKTTT  
Sbjct: 66  AVLVSKPVE---ISSDVCVITVEDTRAAMMACVPYFFDYPANSMRMIGVTGTNGKTTTTH 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMS 170
           M+   L +       IG+ +  IG            V      +   V+ G+    + +S
Sbjct: 123 MIRHILKAQGHKVGVIGTVHIMIGDTSYPIHNTTPDVVDLQHILHQMVEEGVTHCVMEVS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228
                      V    AV T +   HL      E    A  K                  
Sbjct: 183 SHALALGRVSGVEYDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSKPNQVKSGKGAV 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        I ++    +            + S   V   G    V  +  
Sbjct: 243 INIDDAYGHRVVEKTTAPIITYSIDGSGTLNAHDVDMTPKSSRYTVSYDGHDYTVAMNTT 302

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +G   +    ++   KAL  F    GR +                + + 
Sbjct: 303 GLFNVYNTLAAIGACLLEGISMEDIDKALKTFSAVPGRFELIEEGQPFAVVVDYAHTPDG 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    ++L       E R I V G     G    +    +   ++      V+++ 
Sbjct: 363 -------LENILQTAKAIQENRIIVVFG----CGGDRDATKRPIMGRIAAQYGDVVYVTS 411

Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                +KD L    H                    GD+V++  K 
Sbjct: 412 DNPRTEDPVQIVKDVEVGVKDGLREGTHYEVIVDRREAIQHAIQHAKSGDIVLIAGKG 469


>gi|311748593|ref|ZP_07722378.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
 gi|126577117|gb|EAZ81365.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Algoriphagus sp. PR1]
          Length = 487

 Score =  145 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 152/474 (32%), Gaps = 49/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +   S     +  +  I  DSR +     F A+ G   DGHDFI  A+  GA 
Sbjct: 4   LKDILYKVSLVSTTGDMEVQIQDIVFDSRKVKEGSVFVAVPGTQVDGHDFIDKALALGAK 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+     + S     I    V +   A+  +A         K  ++A+TG+ GKTTT  
Sbjct: 64  AVIFEK--LPSELQKGITYVQVVNSAKAMGIMAGNYFDNPSEKLKVVAVTGTNGKTTTVT 121

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +  +    + + +  N   +P T             +  ++       +  S
Sbjct: 122 LLHQLFMRMGYSTGLLSTVENKINEEVIPATHTTPDSVSIQALLKQMLEAGCTHCFMEAS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     ++   AV T I+  HL      +E   AK ++F+ L K     +N DD 
Sbjct: 182 SHAIVQERIAGLKLAGAVFTNISHDHLDYHLTFDEYIKAKKKLFDELPKAAFALVNGDDK 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++             +FG    A+F+ +      E            +         
Sbjct: 242 RGMVMLQNCKGS----HQTFGLKTPAEFKAKIISNTLEGLE-------LDINGTLIWFMM 290

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N    LG++       +   + L      +G   R+      G   ++D ++  + 
Sbjct: 291 IGAFNAYNLLGVLGTAVLLGEEEEEVLRELSGIKGARGRFDRISIGGVTAIVDYAHTPDA 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL  I+    G    +   +   G         +   +++     V L+  +
Sbjct: 351 -----LDNVLKTINGVRTGVEQLI--TIVGCGGNRDKTKRPIMAKIAVQESDKVILTSDN 403

Query: 411 VL-----ALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +   I V         E               GD++++  K 
Sbjct: 404 PRFEDPMDILKDMQTGIGVSEIRKSLTIEDRKEAIKTACMLSNKGDIILIAGKG 457


>gi|265764985|ref|ZP_06093260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
 gi|263254369|gb|EEZ25803.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_16]
          Length = 485

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 161/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +IQ   I       + G+ IDSR +     F A+ G   DGH +I  AV+KG
Sbjct: 1   MKLKEILTSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  ++     + +  +  +    V D   A+ K A        +   ++ +TG+ GKTT 
Sbjct: 61  ATAILCEE--LPAELAEGVTYIQVADSEDAVGKAATTFYGNPSSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K      N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ R  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAARASDRVIITS 401

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GD ++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDTEDKKKTLSIADRKEAIRTACMLAEKGDAILVAGKG 457


>gi|255010085|ref|ZP_05282211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147880|ref|ZP_07810073.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136647|gb|EFR54007.1| meso-A2pm-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 485

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 93/476 (19%), Positives = 166/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L +I    I       + G+ IDSR +     F A++G   DGH +I  A++KG
Sbjct: 1   MKLKEILTSIHPVKITGNQDIEITGVDIDSRQVGSGHLFMAMRGTQTDGHAYIPAAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  ++     + +  +  I    V D   A+ K+A A      SK  ++ +TG+ GKTT 
Sbjct: 61  AIAILCEE--LPAELNEEITYIQVTDSEDAVGKVATAFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELG 168
             +L             I +  N+I             P+TL R+     D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ L K+     N D
Sbjct: 179 VSSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDELPKSSFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTKS----KVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R              Y  
Sbjct: 291 GRFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAIRSPQGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++ 
Sbjct: 347 TPDALVNVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITS 401

Query: 409 FHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         + D L                              GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDNEDKKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|59712813|ref|YP_205589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59480914|gb|AAW86701.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 493

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 168/480 (35%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL         +     ++ +++DSR ++P   F AIKG   DG  FI  A+++
Sbjct: 1   MMQLSELL----LPWCDLNQSVAISSMTLDSRQVSPGCLFVAIKGHAVDGRQFISSAIEQ 56

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           GA  V+ + D     G++ +     V  +D +   L+ +A A     +    ++ ITG+ 
Sbjct: 57  GAVAVIADADKENIAGTVKVIDNAIVVYIDSLYTQLSAIAGAFYQADKRNMQLVGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166
           GKTT  +++    + +++  A +G+             N  G P+ + +   +++    +
Sbjct: 117 GKTTISQIIAQWTTLLEQPAAVMGTTGNGLLSDLKPALNTTGSPIEIQQTLTELENIGAK 176

Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           L     S  G ++   + +    AV T ++  HL     +   A AK  +F       +I
Sbjct: 177 LTALEVSSHGLVQGRVNALSFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHRPKNSI 236

Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               D    + LK   HA+ +     +                 +E   + +     ++ 
Sbjct: 237 INGDDQVGCQWLKEMPHAVAVSLNEENISFHSGKKVFATSVVYSTEGIKLSISSDWGNVA 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+    +  L  D+    +  S  +   GR + +            
Sbjct: 297 FSVPLIGAFNASNILVAFAALLSLGYDIQALAQTASQLNAVIGRMELFATDNKAKVVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A   ++         +  H EG+   + G     G    +    +   +      
Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPIMASIVEQQAD 405

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + LS  +            +   L  +   H          F  S   + D++++  K 
Sbjct: 406 AIILSDDNPRSEEPSLITDDMLVGLKNAESAHVIHDRFEACQFALSQANENDIILLAGKG 465


>gi|150016190|ref|YP_001308444.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902655|gb|ABR33488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 489

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 153/462 (33%), Gaps = 56/462 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL+ +    I          +S DSR +     F  IKG + DGHD+I  A++ G
Sbjct: 1   MKLYNLLKDLDYEIISGSVDIDARSVSYDSRKVKGGSVFICIKGANADGHDYIDEAIKSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +V+  ++   I + +I V  V +   AL  +A            ++ +TG+ GKTT 
Sbjct: 61  ALAIVIQEEI--KIDNENITVIKVRNTKLALASIANVFYNEPSKEINLVGVTGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-------------------MPVDVDFG 163
              +   L S KK  A IG+            +                   +    +  
Sbjct: 119 IHYIKDILESYKKRTAIIGTLGYEFNKEKASIQKVNPTTPESLELQGLFREFINKGAENI 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S L + R      +  + V T ++  HL     +E   + K ++          
Sbjct: 179 VMEVTSSALAKQRVEYCDFK--VGVFTNLSQDHLEEHGTMENYKNEKIKL-------FKK 229

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------QSWMEVQLQ 277
                 +  + +  +        I ++G +K AD +  + +  ++      +        
Sbjct: 230 CELGVINLDDGIAEEIIQKASCKILTYGINKEADIRATEIRYRNDCIIFKIKFRDIKWRW 289

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               +V  +  G     N+L  +G    L  D+   I  LS      GR +  +  LN+ 
Sbjct: 290 WCITDVKVNIPGKITVYNVLAAIGACIGLGMDMGDIISCLSNLRHVPGRLEMIKNNLNKN 349

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                  + +A          +L       +G+ I V G     G         +  + +
Sbjct: 350 IIVDYAHTPDA-------LERLLMMARETTKGKLITVFG----CGGDRDKSKRKVMGMAA 398

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
                +  ++  +             +   E ++     I S
Sbjct: 399 GILSDYCIITSDNPR-------TEDPIKIIEDIEEGMEVINS 433


>gi|308069885|ref|YP_003871490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
 gi|305859164|gb|ADM70952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Paenibacillus polymyxa E681]
          Length = 495

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/482 (15%), Positives = 139/482 (28%), Gaps = 55/482 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +         GI  DSR +   + F  + G   DGHD+   A+  GA 
Sbjct: 3   LQQLASLLAVSRVVGDGTVDCRGIGADSRRVQQGDLFLCLPGFTVDGHDYAEQAIASGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            +VV  ++      + +P   V D   A+  LA            +I ITG+ GKTT   
Sbjct: 63  ALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITY 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           ++   +         IG+     G                           V   + E+ 
Sbjct: 118 LIEKIMKDAGVNTGLIGTIQMRYGGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEV- 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIF 224
            SH  E   +        A+ T +   HL   + +EE  +A     + +     +  +  
Sbjct: 177 SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASDS 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   +   A     + ++G  K +D Q       S+ +   V       ++ 
Sbjct: 236 KYAVLNADDPASSYLQAQTAAQVITYGVEKESDVQASSITIGSKGTSFHVSTFKGDTDIE 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +    +    +    ++L      +GR +                
Sbjct: 296 LRMVGKFNVYNALAAITAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAH 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +          +VL  +     G+   V G     G         L   ++     H 
Sbjct: 356 TPDG-------LENVLRTVKEFAVGKVWCVFG----CGGDRDRTKRPLMGKIAARYSDHS 404

Query: 405 WLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449
           +++  +            ++  L    +     E                   DVV++  
Sbjct: 405 FITSDNPRTEDPKVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|317504117|ref|ZP_07962119.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
 gi|315664789|gb|EFV04454.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella salivae DSM
           15606]
          Length = 483

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 150/476 (31%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +++L+ I    I       + G++IDSR I     F AI+G   DGH FI  A++ G
Sbjct: 1   MKLNEVLKNITPIKIVGNDNVEITGVNIDSRRIKAGHLFVAIRGTQVDGHQFIDKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+     +    S  +    V+    A+ K+A         K  ++ +TG+ GKTT 
Sbjct: 61  ADAVLCEE--LPEKLSDHVTYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y + + VP                  V+       + 
Sbjct: 119 ATLLYNMFRKFGYKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++    + T +   HL      E   +AK   F+GL K      N D
Sbjct: 179 CSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF+ R  +   E  ++E+  +   ++ +    
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIRSMADFRARILECHFEGMYLEIDGREVGVQFIGKFN 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++       + +      D+   +  L     +               +    ++   
Sbjct: 295 VSNLLAVYGAAIMLGK-KPEDILLVLSTLHSVSGRLEPIHSPEGFTAIVDYAHTPDALAN 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              ++   +         G+G  I V G     G         L    ++     V ++ 
Sbjct: 354 VLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L       V                   GDVV+V  K 
Sbjct: 402 DNPRFEDPQEIINEMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|115372748|ref|ZP_01460054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823493|ref|YP_003955851.1| UDP-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|115370229|gb|EAU69158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309396565|gb|ADO74024.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 507

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 148/489 (30%), Gaps = 54/489 (11%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+L         G      V G++ DSR + P + F A+ G   DG  ++  AV +
Sbjct: 1   MKLTDVLAGCGAEQVSGGRSSVDVTGVTQDSRRVKPGDLFVAVPGTKEDGAQYVGEAVSR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  VV    +    GS  +P F V     AL  +A     R   + T++ +TG+ GKTT
Sbjct: 61  GAVAVVSEKPV----GSSQVPFFKVSSSRKALALIAANFYGRPAQQLTLLGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH-----------IGVPLTLARMPVDVDFGIFE---L 167
           T  +L    ++   +   IG+                  PL L R+  ++     E   +
Sbjct: 117 TTYLLEAISAAAYASTGVIGTLGYKVNGKVVETANTTPDPLELHRIFREMVDAGVETVVM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++   H +    A  T +   HL     IEE   AK  +F        + +  
Sbjct: 177 EVSSHALVQERVHGLTFKAAAFTNLTRDHLDYHKDIEEYFQAKRRLFGENLSATGVAVVN 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D  +            +  + F +    +          +     ++     + V    
Sbjct: 237 GDDTYASRIYNELRGQKRMAWKFSRQGAGEISAADVSFSLQGIKATLKTPAGDIPVKSRL 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N+L   G+              +       GR +R    +      ++ +  +
Sbjct: 297 VGPHNLENILAATGVALGAGIARRDVQTGIERMGGLPGRMERVENYMPGPAPAVLVDYAH 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            + A        L       +GR I V G     G         L    +      V ++
Sbjct: 357 TDDA----LKRALEASRTLAKGRVIVVFG----CGGDRDKGKRPLMGTAAAEGADLVVVT 408

Query: 408 G-----FHVLALKD-----------------ALPRSIHVHYSE-TMDGLFLFIQSSLVDG 444
                      + +                         +  +               + 
Sbjct: 409 SDNPRTEDPAEIIEQVTPGLEKGGLRRISAGKAKSGEKGYLVDADRRAAIETAVGLARED 468

Query: 445 DVVVV--KS 451
           DVV+V  K 
Sbjct: 469 DVVLVAGKG 477


>gi|319795793|ref|YP_004157433.1| mur ligase middle domain protein [Variovorax paradoxus EPS]
 gi|315598256|gb|ADU39322.1| Mur ligase middle domain protein [Variovorax paradoxus EPS]
          Length = 1028

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 117/478 (24%), Positives = 202/478 (42%), Gaps = 40/478 (8%)

Query: 5    WTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQ-EAF-------------FAIKGP 49
            WT  ++ +   G  +         +G++  S  +      F               +KG 
Sbjct: 573  WTASEMARVTGGEWVVRPEDGWRASGVTQRS-FMRKGRVVFENQTRPSKTPLAAVTLKG- 630

Query: 50   HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                       V + A  V+             +PV  V +VL A+ +L   AR      
Sbjct: 631  -----------VLQPAAAVLCTDP--KPHLDKRVPVLKVPNVLQAVLQLGEHARTEFTGR 677

Query: 110  IIAIT-GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +  +     G +T   M+  AL+   +     G+ +   G+   L  MP    + + E+G
Sbjct: 678  VCGVLGHGTGSSTVAAMMAGALTVWGEVGQPEGNISLPSGIAWNLTCMPRHAAYWVLEMG 737

Query: 169  MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             SH   +   + LVRP + V+T ++ A   +    +  A   A IF+G+     + LN D
Sbjct: 738  TSH---MPASSQLVRPSLVVVTGLSAASQKHRGPSDAAARMDARIFQGMAAGDNVVLNRD 794

Query: 229  DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               F +    + A  ++ + ++G+ ++AD +L       +   ++ Q+ G+  ++  +  
Sbjct: 795  MPEFPIFAEAATAHQLQIV-TYGEHEDADVRL----LAFDHGEVQAQVAGEPFQLRLNAP 849

Query: 289  GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            G HM    +  LG +  L   +  A++  + F P  GRG  +   +  G F LIDE+Y+A
Sbjct: 850  GRHMGAAAVAALGALQSLRLPLAAAVEPFAHFEPPGGRGALHTIHIGGGSFKLIDETYDA 909

Query: 349  NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            NP+SM+AA+ +LSQ       R +A+LGDM E+G  +Q  H+DL   L       V L G
Sbjct: 910  NPSSMRAALELLSQAPCEPARR-VAILGDMQELGPAAQRHHLDLEAELLASQPDRVLLCG 968

Query: 409  FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              + AL  ++   +  H+   +  L   +   L  GD V+ KSS   G  RL  +L  
Sbjct: 969  PLMRALHASIRTKVRSHWFVDVSDLSTALGGLLQPGDWVLAKSSAGVGLSRLARVLKA 1026


>gi|319935668|ref|ZP_08010099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
 gi|319809326|gb|EFW05761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coprobacillus sp. 29_1]
          Length = 484

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 145/469 (30%), Gaps = 41/469 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       V+ I  DSR++  +  F  I G + DGHDFI   + +G
Sbjct: 1   MKLKQLLNEMNYQVLQGDLNQEVSQIDYDSRTVQDRSLFVCIPGANVDGHDFIDQVINRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A ++VV  D+        I    V +   AL  L+ A         T+I ITG+ GKTTT
Sbjct: 61  ARVIVVEHDVPF---QEGITYIRVKEARLALALLSCAFFEHPSRQMTVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKT---------YACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L    K                       P +       R  V+       + 
Sbjct: 118 SYMMESILEKANKKVGIIGTIGSIVNGEFQKTKNTTPESFELQRLMRQMVECGCEYCVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      +     V T ++P H+           +        +    +     
Sbjct: 178 VSSQGLMLNRVAGIDFDYGVFTNLSPDHIGEHEH-----HSFEHYMACKKMLFQMCKVGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +             I ++   + +D +  +         + V  Q   +   +   
Sbjct: 233 FNRDDEHYEDMIKGAKCDIKTYSLHQQSDLKASQIHLSQGTGTLGVSFQTSGLIDANFET 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  + +                    RG+     + Q +  +ID ++NA
Sbjct: 293 DIPGHFSVYNSLVAIILCHLLGIETNYIKEALKKVRVRGRVEIVPVGQKYTVMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
              S ++ +  +    PH       +L      G        D+ E+++ Y    +  + 
Sbjct: 353 --LSFESILQTIMDYQPHR------ILCVYGAGGHRDVKRRYDVGEIVAKYKAFSILTAD 404

Query: 408 ---GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVV 448
              G +V  + + +   IH         E       +        DV++
Sbjct: 405 NPRGENVSQICEDIVTGIHRVGGDYVIIEDRKEAIHYALEHAEANDVIL 453


>gi|317493284|ref|ZP_07951706.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918677|gb|EFV40014.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 495

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/473 (15%), Positives = 143/473 (30%), Gaps = 43/473 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   V+ 
Sbjct: 6   LRALLAPWVADAPERVLREMTLDSRIAAAGDLFVAIVGHTADGRHYIPQAIAQGVAAVIA 65

Query: 71  NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             D  A  G    S  IPV  +  +   L+ LA     +      +I +TG+ GKTT  +
Sbjct: 66  EADGEAEDGTIRESHGIPVIYLSQLNQRLSALAGRFYHQPGADLRLIGVTGTNGKTTITQ 125

Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170
           +L      + + +       N  +G                               + +S
Sbjct: 126 LLAQWGQLLGETSAVMGTVGNGLLGQVHPSENTTGSAVDVQHLLRSLVSQGATLAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    +  T ++  HL     +E    AK  +F        I    D+ 
Sbjct: 186 SHGLVQDRVAALPFAASAFTNLSRDHLDYHGDMEHYEQAKWLLFSTHHSGEKIINADDEV 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIG 289
               L     A+ +       ++    +         +  + +          +    +G
Sbjct: 246 GQRWLAKSPDAVAVTMEQRLPENWAGRWVSASQVDYHDSGASISFDSSWGKGVLESRLMG 305

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L+    +  L   +D   K  S   P  GR + +              + +A 
Sbjct: 306 AFNVSNLLVAAATMLALGYPLDVLCKTSSQLQPVCGRMEVFTAPGKPTVVVDYAHTPDA- 364

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                     L     H +G+   V G     G         L   ++      V ++  
Sbjct: 365 ------LEKALEAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQYADRVVVTDD 414

Query: 410 H---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  + + +  + H                     DV++V  K 
Sbjct: 415 NPRSEEPRAIMADILNGMLDAGHAQAISGRAEAVTGAIMQAKPDDVILVAGKG 467


>gi|295677465|ref|YP_003605989.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
 gi|295437308|gb|ADG16478.1| Mur ligase middle domain protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 125/473 (26%), Positives = 207/473 (43%), Gaps = 39/473 (8%)

Query: 5    WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSI---APQEAFFAIKGPHYDGHDFILHA 60
            W+   +    QG  +   P +   NG+ I    +          A  G            
Sbjct: 571  WSASVIQSVTQGTWLTPPPSEWTANGLCI---YVPAMQAGNVVVARVGET---------- 617

Query: 61   VQKGA------------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
              +G               V+ +   V +     +PV  V D   A+  +   AR +   
Sbjct: 618  -DRGIPVPVIRRMHTRPVGVITSDPDVQAQLK-DLPVLHVADTGKAILAMGSYARKQMSG 675

Query: 109  TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             ++A+TGS GKTT   ML  AL++  +T A   + N   G+   LA +  D    + E+ 
Sbjct: 676  AVLAVTGSAGKTTLVAMLADALNAYGQTAASAFNANLPHGLSWNLASINWDTPHVVLEVA 735

Query: 169  MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               +G +     + RP+I++ T I PAHL   S I +IA  K+ IF G+     + LN D
Sbjct: 736  ---VGNMGKSALIARPNISIFTNIQPAHLGKSSTITDIARTKSMIFRGMSAGSIVILNRD 792

Query: 229  DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +E +   +    +  I ++G +  +DFQL        +    V+++G+ +       
Sbjct: 793  MLEWETVYQAAMEQDL-NIVTYGTTAQSDFQLVDHDAL--RQSATVRIRGRDITYPIGAA 849

Query: 289  GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            G HMA N +  L  V  L   ++ A++ ++ F    GRG+     L+    T+ID +YNA
Sbjct: 850  GLHMALNSVAVLAAVLALNYPLEPALERIARFTALSGRGQELELTLDGRHMTIIDHAYNA 909

Query: 349  NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            NP SM+AA+  L  +        +AVLG+M E+G  +   H DLA V+    I  V++ G
Sbjct: 910  NPGSMQAALEHLRDMKHARRR--VAVLGEMAELGPEAPMLHADLAAVVERCGIDRVYVMG 967

Query: 409  FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                   + LP +    ++ ++D L   +   L D DVV++K SNS G + ++
Sbjct: 968  ELYTGFWEQLPAARRGRHTNSLDELKSALSEELADEDVVLLKGSNSTGIHHIV 1020


>gi|237735921|ref|ZP_04566402.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229381666|gb|EEO31757.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 488

 Score =  144 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 98/460 (21%), Positives = 169/460 (36%), Gaps = 40/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                     +  I  DSR + P   FF I+G   DGH ++  AV +GA ++V + ++  
Sbjct: 6   ELFDTDNDMKIYSIHSDSRYVKPYSIFFCIEGLSVDGHRYVEDAVFQGAKVIVHSKNLNY 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I  F V++ L  LN+++        +K  II +TGS GKT    M+  A++   
Sbjct: 66  YHDK--IIYFRVENTLVELNRVSNLFYDCPSNKMKIIGVTGSSGKTVVASMIKDAMAKYC 123

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHL 181
            +         + G          +  +              +  +  S  G        
Sbjct: 124 SSGYIGTISLEYNGRKEECPYTTPEALYLQRKLFEMNRAGVKVVAMEASSHGLALGRVDG 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  +IAV+T I   HL      E+   AK ++FE ++ TG   LN DD  F  LK  +  
Sbjct: 184 INFNIAVMTNIGAEHLDFHGTKEQYVLAKQKLFEMIKPTGWAILNSDDLNFMTLKNNTQG 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                I ++G    +D   +  +   + S  ++  +G +  V    I      N+L   G
Sbjct: 244 ----RILTYGIEIESDIMAKNIQLHLDHSEFDISFKGNTFHVNSPVIAMFNIYNVLALTG 299

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  +  D    I A+    P EGR +  +            +       S   AI    
Sbjct: 300 VLIAMGCDDKMVIDAVENVKPIEGRMELIQTEQQFAVIIDYCQ-----HISNYEAIFEYV 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
                G GR IAVLG     G+ +     +L ++ + Y + HV L+     G  V  +  
Sbjct: 355 DGVRQGHGRIIAVLGAP---GKRNYKLRKELGQLANRY-LDHVILTQLDDRGEDVYEICK 410

Query: 417 ALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + +    I+    E+               D++++  K 
Sbjct: 411 TIQKEIVDINSVIIESRQIAIEQAIEIACKDDIILILGKG 450


>gi|114798974|ref|YP_761706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
 gi|114739148|gb|ABI77273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Hyphomonas neptunium ATCC 15444]
          Length = 478

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 138/455 (30%), Gaps = 36/455 (7%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +  + G++ DSR + P   F A+KG  +DG  F+  AV +GA  ++ +      I
Sbjct: 9   LAENGETEILGMTSDSRKVQPGWLFAALKGSVHDGGKFVPQAVAQGAAAILSD----GGI 64

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-- 136
           G++S+P    D+   AL   A          ++A+TG+ GK++T +      S       
Sbjct: 65  GAVSVPHVMADEPRRALALAAKRFYGEQPEFVVAVTGTNGKSSTVDFARQIWSRAGIKAA 124

Query: 137 -----YACIGSYNNHIGVPLTLARMPVDVDFGI-------FELGMSHLGEIRFLTHLVRP 184
                 A   +    IG          +    +         +  S  G  +     V  
Sbjct: 125 SMGTLGAIGPAGKVDIGHTTPDPVTVSETMKALARQGVTHCAMEASSHGLEQHRLDGVDL 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
                  +   HL   + +E    AK  +F  L   G   +   DS       ++     
Sbjct: 185 SAVAFLNLTQDHLDYHATMEAYLDAKVRLFRDLAPRGIPAIVNADSDHREAVEETARKAG 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + SFG      +      + + Q+        +   +    IG     N L    +  
Sbjct: 245 LQVVSFGWRGEDLWIDELMPKATGQTLFLYWKDVEQKPIELPLIGEFQTLNALAAAALCL 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +       L+   P +GR               +   Y   P  +   +     + 
Sbjct: 305 SLGMEFPAVADGLANLKPVKGR---LEFVGKTETGAAVFVDYAHTPDGLDVLLRA---VR 358

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDAL 418
           PH  GR   + G     G    +    +   ++      V ++  +             L
Sbjct: 359 PHTAGRLKVIFG----CGGDRDAKKRPIMGEIASRQADDVIVTDDNPRSEDPAKIRASVL 414

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +               +   L  GD +V+  K 
Sbjct: 415 GGATGAREIGDRAEAIHAVVRELKKGDTLVIAGKG 449


>gi|15602002|ref|NP_245074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pasteurella multocida subsp. multocida str. Pm70]
 gi|13431686|sp|P57815|MURE_PASMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|12720352|gb|AAK02221.1| MurE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 494

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 79/463 (17%), Positives = 153/463 (33%), Gaps = 46/463 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P   +  + +DSR++     F A++G   DG  +I  A+ KGA  V+  T+      S 
Sbjct: 14  APNIELTEMILDSRAVKQGCLFVALQGHQVDGRQYIPQAIAKGASAVLAETEDAQQHLST 73

Query: 82  ----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +P+     +   L+ LA         K T++ +TG+ GKTT  ++L    + +  
Sbjct: 74  KIEQGVPIISFYQLGSHLSALAGLFYDNPSHKLTLVGVTGTNGKTTISQLLAQWTTLLGH 133

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLT 179
             A +G+  N  G+   +          +                  + +S  G ++   
Sbjct: 134 RSAVMGTIGN--GLLGQVKEATNTTGSAVEVQASLADFVKRGADFAAIEVSSHGLVQHRV 191

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   +A+ T ++  HL     +E  A AK  +F  L     I    D      L+ + 
Sbjct: 192 EALAFDVAIFTNLSRDHLDYHQSMENYALAKKRLFTELNSRHQIINADDSVGQTWLQEQP 251

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           +A+ +     F   +    +    +   + + ++ +      E+    IG     N+L+ 
Sbjct: 252 NAVAVSCQTDFKPHQARWLKATAIQFSQKGARIQFESSWGKGELHSALIGQFNVSNLLLV 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D++  +K +       GR             T I +  +   A        
Sbjct: 312 FATLLSLGYDIEKLMKTVPQLTGVCGR---MERLSASNQPTAIVDYAHTPDA----LEKA 364

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L     H +G+   V G     G         +   ++     HV ++  +         
Sbjct: 365 LQAARLHCQGKLWCVFG----CGGDRDRGKRPIMAKIAEQFADHVIVTDDNPRTESAAQI 420

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +        HV      D   +         DVV++  K 
Sbjct: 421 VQDILAGFEHPQHVEVCHARDQAIIQALQKADSDDVVLIAGKG 463


>gi|283769586|ref|ZP_06342482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283103854|gb|EFC05240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 492

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 171/489 (34%), Gaps = 53/489 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P+  +  I+ DSR   P   FF +KG  +DGH F+  A++ GA  VV + ++V 
Sbjct: 5   QLFKQAPEIEIQSINDDSRKKKPNSLFFCVKGMRFDGHQFVQDAIENGAIAVVHSEELVH 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I  F V+DV+  LN +A            +  +TG+ GK +  +++   L+  K
Sbjct: 65  Y--EEGILYFRVNDVVDTLNVIADLFYAEASYHLQMFGVTGTNGKESIAKIIQEVLNPDK 122

Query: 135 KTYACIGSYNNHIGV---PLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHL 181
            T         +  V   PL      +D+   + E+           +S +G  +     
Sbjct: 123 ATGNIGSDSITYGTVKLQPLLTTPNIIDLHSILKEMVDAGMKAATLEVSSVGVEQKRVQS 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V    A+ T +   HL     ++    AK + F+ L++      N DD +   +   S A
Sbjct: 183 VHFDYAIFTNLDHNHLDFHGTMQNYFEAKKKFFDDLDEKACAITNIDDPYGLKMVEDSEA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + ++G S+ A + +R+++   + +   +++  +  ++  + +      N+   + 
Sbjct: 243 ----RVVTYGMSEEAMYSIRQYRLKKDGTSFCLKVYDQEYDIETNLVSRFNLMNLTAAIV 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +      ++   + +      EG  +  +   N      I  + +           VL 
Sbjct: 299 ALHESGVKMELIQERVKFLTQMEGHMQMIQEGQNFNVLVDIAHTVDG-------LSRVLE 351

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD 416
             +         ++ +   +G+  +     +  ++  Y    + L+           + +
Sbjct: 352 YATSITPKNCRIIVVN-GSVGKRDKIKRQKVGNLMDQY-CDMIILTEEDPRNESPREIAE 409

Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYR------------ 459
            + + I                         D V+V  K  N     R            
Sbjct: 410 EIAKGIDKTPYLIISDRYDAIRQALELADPEDTVLVLGKG-NQKFMERDIGRCSYQGDVI 468

Query: 460 LINLLLEEF 468
           ++  +L+++
Sbjct: 469 IVKEVLKKY 477


>gi|312128120|ref|YP_003992994.1| udp-n-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778139|gb|ADQ07625.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 486

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 154/477 (32%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL++ I    +        +  I+ +S++     AF  IKG   DGH++I  A+Q 
Sbjct: 1   MKLKDLIENIDVLETNVKDFDKDITDIAYNSKNAKEGCAFVCIKGFKADGHEYIDEAIQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA LVVV      S     I      +   AL  ++            +I +TG+ GKT+
Sbjct: 61  GACLVVVEEFFDTSKIEGKIDYIKTSNTRKALAVMSANFFGHPSKDFLLIGVTGTNGKTS 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166
           T  M+   L +  +    IG+  N IG               +     +M  +    +  
Sbjct: 121 TTFMIKSILEANSQKVGLIGTIKNMIGSREIEAQHTTPESYDLQKLFWQMKNEGVDSVV- 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S      F  +     + V T +   HL     +E   +AK ++F   +K      +
Sbjct: 180 MEVSSHSLELFRVYDCDFDVGVFTNLTQDHLDFHGTMENYFAAKLKLFGMSKKRVVNADD 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +             ++ K  +A    R  K    ++  E+   G+  E+  +
Sbjct: 240 RWGKRIIEM--------YPDSVTYAKDSDAQVCARNIKLFVNKNQFELWYNGEKEEITLN 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L        L   +DT  K L       GR +                + 
Sbjct: 292 IPGLFSIYNSLAASACCISLGIKLDTIKKGLENLKAVPGRFEIVESNEKFTIVIDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +         ++++  +    EGR++ + G     G         +   ++      V +
Sbjct: 352 DG-------LLNLMKTVDEVAEGRKVLLFG----CGGDRDRTKRPIMGEIAGRMADFVIV 400

Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            + + + + ++             +   +  + D +V+  K 
Sbjct: 401 TSDNPRTEDPLKIIADILEGIRKTNVEYMVIPDRYEAIKYAIKNARENDFIVLAGKG 457


>gi|296327807|ref|ZP_06870345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296155063|gb|EFG95842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 485

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 158/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134

Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V               +    +   +++ I E+    L   R    ++    A
Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVE--VLDFDYA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDEFIVDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               ++ + +         S+  +++V+ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIENGDLEG------DYSDDGYIDVKYKNQIEKVKFLLLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   ++      V L+  +            +K   
Sbjct: 361 GSRIITIFG----CGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|121601930|ref|YP_989233.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bartonella bacilliformis KC583]
 gi|120614107|gb|ABM44708.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bartonella
           bacilliformis KC583]
          Length = 483

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 148/457 (32%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
             +    + GIS +SR I P   F A++G   DG  +I  A+++GA +VV + D VA   
Sbjct: 14  NNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE-- 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +LS+PV  V DV   L   A         T++A+TG+ GKT+    +      +    A 
Sbjct: 72  NLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAAS 131

Query: 140 I-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPH 185
           I              +     P+ L R+  +  D G+    L  S  G  +     V   
Sbjct: 132 IGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHAALEASSHGLDQSRLDGVNLA 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A  T +   H+   + +++   AK  +F+ L       L   D  +            +
Sbjct: 192 AAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGR 251

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G+        R   + S+Q                  +       +   L    +
Sbjct: 252 RALTIGRKGQFIKINRIEHRRSKQYVECRIENDVY----TFDLPLVGHFQVTNALMAAGL 307

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 ++ K  S     +G   R            +   Y   P +++  +       P
Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAA---RP 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
              GR I V G     G         L   +++     V ++  +            +  
Sbjct: 365 FTPGRLIVVFG----CGGDRDQGKRPLMGKIAVDKADIVIVTDDNPRTEEPEKIRQDILQ 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A P ++ +           +    L  GD +++  K 
Sbjct: 421 AAPGALEI---ADRSEAIYYAVGLLEAGDTLIIAGKG 454


>gi|86137688|ref|ZP_01056265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
 gi|85826023|gb|EAQ46221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. MED193]
          Length = 499

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 147/468 (31%), Gaps = 39/468 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L     G +        ++G+++DSR  A    F A+ G    G  FI  A+++GA 
Sbjct: 14  LSEL-----GLTARGGADPLISGLAVDSRRAADGALFAALPGSQVHGAKFIPAALEQGAV 68

Query: 67  LVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            ++ +          +      +  V+D   AL   A         T++A+TG+ GKT+ 
Sbjct: 69  AILTDAAGAKIAAQPLEESHAALVIVEDPRQALAYAAALWFGAQPQTMVAVTGTNGKTSV 128

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT-----------LARMPVDVDFGIFE--LGM 169
              +     ++      +G+                        +    + G+    +  
Sbjct: 129 ATFVRQIWCALGHEAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAKAAEAGVTHAAMEA 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     V+   A  T     HL      E   +AKA +F  +     + +   +
Sbjct: 189 SSHGLDQCRLDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMN 248

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                      A   + + S G+    D  L   +       +      +  +   + IG
Sbjct: 249 DSRGAEMRAVAAARGQEVISIGR-GLGDISLTGLRYDDTGQDLRFNWHDQPYQKRLNLIG 307

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+L+  G+V     D       L       GR +      N      +D ++  +
Sbjct: 308 GFQAENVLLACGLVIAGGEDPAAVFDTLPQLTTVRGRMEHAATRDNGA-SVFVDYAHTPD 366

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +       +  + PH  GR +A++G     G    +    L    +  N   V ++  
Sbjct: 367 AVAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGRAAQENADVVIVTDD 417

Query: 409 ----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    ++ A+                 L     L  GD +++  
Sbjct: 418 NPRSEDPAVIRAAVRGGAPDALEVGDRAEAILRGVDMLSTGDALLICG 465


>gi|168215221|ref|ZP_02640846.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
 gi|170713380|gb|EDT25562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens CPE str. F4969]
          Length = 484

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + V+    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|168215491|ref|ZP_02641116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
 gi|169343648|ref|ZP_02864647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|169298208|gb|EDS80298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens C str. JGS1495]
 gi|182382071|gb|EDT79550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens NCTC 8239]
          Length = 484

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + ++    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|168206084|ref|ZP_02632089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
 gi|170662428|gb|EDT15111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens E str. JGS1987]
          Length = 484

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + V+    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-GIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFIIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|65317673|ref|ZP_00390632.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 153

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 3/146 (2%)

Query: 6   TFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   + Q I G           + G+SID+R I     +  I+G  +DGH F+  AV+ G
Sbjct: 5   TLKQVEQMINGTGLAEQYEGITIQGVSIDTRKIEKGNLYVPIQGERFDGHAFVDKAVENG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +   D+  +    ++PV  V+D L AL  LA   R +    +I +TGS GKT+TK+
Sbjct: 65  AVATLWVKDV--ANPPENLPVIFVEDTLSALQMLAKNYRDQLDVKVIGVTGSNGKTSTKD 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP 150
           ++T  L++  K     G++NNHIG+P
Sbjct: 123 IVTSLLATKFKVQKTEGNFNNHIGLP 148


>gi|114704927|ref|ZP_01437835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
 gi|114539712|gb|EAU42832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 157/469 (33%), Gaps = 37/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I  H+   + +  ++G+++DSR++     F A+ G   DG  FI  A  KG
Sbjct: 1   MNLARLANGI-AHAPDNLDKTEISGLTLDSRAVGEGFLFVAVSGSKVDGARFIEDAKAKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+ ++D V       +PV   D+   +  K+A     +   T++A+TG+ GKT+   
Sbjct: 60  AVAVLTSSDAVVE---TDLPVIRADNPRLSAAKMAARFYEKQPETMVAVTGTAGKTSIAS 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
            L    ++     A IG+             +       + E              +  S
Sbjct: 117 FLRQIWTATGLKAASIGTTGVVSPSRNDYGTLTTPDPVALAELLASLEGEGVTHASMEAS 176

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +F    VR      T +   HL     +E   +AK  +F  L   G   +   D 
Sbjct: 177 SHGIDQFRLDGVRLAAGGFTNLGHDHLDYHPDLESYFTAKMGLFTRLLPKGAPAVINTDD 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +     +        + + G++ +    L++ +   E+   EV+       VV    G 
Sbjct: 237 QWSGRAIEVATGVGCDVRTVGRNGSL-LALKRLEHERERQVAEVKTPDGIQRVVLPLAGE 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +    V  A++ L       GR ++       G    +D ++    
Sbjct: 296 FQMSNALVAAGLAIVTGTPVKAALETLENLKGASGRLEKAGMTAG-GVPVFVDYAHKPEA 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   VL  + P   GR I V+G     G         +   ++      V ++  +
Sbjct: 355 LE-----HVLRAVRPFTTGRVILVMG----CGGDRDKTKRPMMGEIANRLADVVIVTDDN 405

Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +        + +  +                      GD V+V  K 
Sbjct: 406 PRSEDPAVIRSEIMAAAGEAREIGDRREAIRAAVGEARTGDTVIVAGKG 454


>gi|168210775|ref|ZP_02636400.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
 gi|170711101|gb|EDT23283.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens B str. ATCC 3626]
          Length = 484

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 94/470 (20%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + V+    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGVQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGLKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|18310844|ref|NP_562778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
 gi|21362685|sp|Q8XJ99|MURE_CLOPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|18145526|dbj|BAB81568.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Clostridium perfringens str. 13]
          Length = 484

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 93/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + ++    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-GIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|19704560|ref|NP_604122.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|24212037|sp|Q8R635|MURE_FUSNN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19714848|gb|AAL95421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 485

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 155/451 (34%), Gaps = 42/451 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+  +       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKKVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSS--------- 132
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +           
Sbjct: 75  SYILIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPITRIGTI 134

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVI 189
             K    +    N     L L ++         E   + +S          ++    A+ 
Sbjct: 135 EYKIGDKVFEAVNTTPESLDLIKIFDKTLKKKIEYVIMEVSSHSLEIGRVEVLDFDYALF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I  
Sbjct: 195 TNLTQDHLDYHLTMENYFQAKRKLFLKLKDINNSVINVDDEYGKRLYDEFIVDNPEIISY 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             ++ + +         S+  +++V+ + +  +V    +G     N L  +GI   +   
Sbjct: 255 GIENGDLEG------DYSDDGYIDVKYKNQIEKVKFSLLGDFNLYNTLGAIGIALKIGIS 308

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +K +S      GR +   C  +          Y   P ++   I     I      
Sbjct: 309 MEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KNGS 362

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           R I + G     G         +   ++      V L+  +            +K    +
Sbjct: 363 RIITIFG----CGGDRDRTKRPIMAKVAEDLSDVVILTSDNPRTESPEQIFDDVKKGFIK 418

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           S    +    +       +     D++++  
Sbjct: 419 SDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|254518691|ref|ZP_05130747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
 gi|226912440|gb|EEH97641.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sp.
           7_2_43FAA]
          Length = 483

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 158/474 (33%), Gaps = 47/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ +    +    +  VN I  DSR +   + F  + G   DGHD+   A++ G
Sbjct: 1   MKLLDLLKGVDYELLEGTVEKEVNHIQYDSRKVNEGDLFVCLTGFEVDGHDYANKAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A +V+    +   I S  + V  V++   AL  ++            +I +TG+ GKTTT
Sbjct: 61  AKVVLCEKKI--DIKSEGVTVLLVNEGRKALATMSANYYGHPTKSLKLIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166
             +L   L    K    +G+  N+IG                       +  + ++ + E
Sbjct: 119 VYLLKSMLEKAGKKVGLVGTIANYIGENKLKSERTTPESLELQKLFKDMVDANCEYCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  ++  +       + + T +   HL      +   +AK ++FE  + +      
Sbjct: 179 V-SSHSLQLDRVYGC-EFEVGIFTNLTRDHLDFHKSFDNYYNAKFKLFERSKASVINV-- 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   +      L  K I ++  + N+DF+                     +     
Sbjct: 235 -DDDYGYRVLKDVEKLENKEIKTYSINNNSDFKASDLMLKEGDI-------HFKINGEEF 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N+   LG V  ++    +              G+  R          I   +
Sbjct: 287 NSVLPGEYNVYNALGAVGAMSILGISNESIRKGLLDVVVPGRCERIGYKYDIPYDIIIDF 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +K  +     +    + R IAV G     G+  +    +L  + +      +  
Sbjct: 347 AHTPDGLKNILET---LKGFTKNRLIAVYG---CGGDRDKVKRAELGRIGTELADLAIIT 400

Query: 407 SG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           S        +  +K+ +      +Y   E              +GDVVV+  K 
Sbjct: 401 SDNPREEDPMAIIKEIVAGITKSNYLAIENRVEAIKLALGMAEEGDVVVLAGKG 454


>gi|86134331|ref|ZP_01052913.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
 gi|85821194|gb|EAQ42341.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Polaribacter sp. MED152]
          Length = 481

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/489 (15%), Positives = 159/489 (32%), Gaps = 60/489 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 VN +  DSR +   + F A KG + DGH ++  A+  GA  ++      +    
Sbjct: 11  GNTNIEVNQLIFDSRKVGEGDVFIAQKGVNVDGHLYVDKAITLGAKAIICE--GFSFDRK 68

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             I    V D   AL  +A         K  ++ +TG+ GKTT   +L    +       
Sbjct: 69  EGITYIRVADANEALAIMASNFYENPSTKFPVVGVTGTNGKTTIASLLYQLFTKAGYKVG 128

Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            + +    +G                     M +D       + +S  G  +  T  ++ 
Sbjct: 129 LLSTVKILVGNKEYKATHTTPDSVTINRYLDMMLDAGVEYCFMEVSSHGIHQKRTEGLQF 188

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              + T ++  HL       E  + K + F+ L K+     N DD     +   + A   
Sbjct: 189 SGGIFTNLSHDHLDYHKDFAEYRNVKKKFFDDLPKSAFALTNIDDKNGNYMLQNTKAKK- 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              YS+     ADF+ +  ++    + + +       +++     Y++   +     +  
Sbjct: 248 ---YSYALKTLADFKAKILEKQLSGTLISIDNTEVWTKLIGVFNIYNLTAIIATAELLGL 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                    +  L++    E    R+   +++   T I + Y   P ++K  +  ++ I 
Sbjct: 305 E-------KLDILTIVSQLESVNGRFEYVVSEDGVTAIVD-YAHTPDALKNVLETINDIR 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420
            + E     V       G+  +S    +A + +  +   ++ S          + D +  
Sbjct: 357 TNNEKVITVV----GCGGDRDKSKRPKMAHIAAHLSNQAIFTSDNPRTEDPQIILDEMEA 412

Query: 421 SIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS-----------SNSCGFYRLI 461
            I   +                       GD++++  K            S+      + 
Sbjct: 413 GISPEHYNKTLTVVNRRQAIKTACKLSDAGDIILIAGKGHESYQEINGVRSHFNDLEEVT 472

Query: 462 ---NLLLEE 467
              N L ++
Sbjct: 473 NCFNQLKKK 481


>gi|295698681|ref|YP_003603336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
 gi|291157394|gb|ADD79839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Riesia pediculicola USDA]
          Length = 504

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 151/486 (31%), Gaps = 51/486 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       DLL      S  +V       I +DSR I   + F AI G   DG  +I HA
Sbjct: 1   MKTYRNLSDLLH----QSKKLVANVKFKEIKLDSRKIEKGDIFLAIVGSQKDGRKYINHA 56

Query: 61  VQKGAGLVVVNTDMVASIGS-----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           + +GA  ++  ++ +            IP+  V ++   +   +            +I +
Sbjct: 57  ISRGASAIIAESNSLTKEDEFIKFLNQIPIVFVKNIRKKIVFFSKKLYGSLNKKMKLIGV 116

Query: 114 TGSVGKTTTKEMLTI----ALSSIKKTYACIGSYNNHIGVP-----------LTLARMPV 158
           TG+ GKTT   ++                           P            +  +M +
Sbjct: 117 TGTNGKTTVSHIVAQLAKLIGQKSAVMGTIGNGLIGEKIYPSELTTLSCFEICSTLKMFL 176

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +    I  + +S  G  +  T  +    A+ T I   HL   + IE    +K ++F   +
Sbjct: 177 EKSVKIVAMEVSSHGLDQGRTCSLSFSSAIFTNITRDHLDYHNNIEHYELSKKKLFYEHD 236

Query: 219 KTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               +F   D    + +K    S A+ I                 K +    Q+ +    
Sbjct: 237 CKNRVFFIDDPVGSKWIKDFPNSCAVSINHKNKLNLLNRPILYATKIEYLYNQTIIRFNS 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              + E+    +G     N ++ +  + ++   +   IK      P  GR    +   + 
Sbjct: 297 DWGNGEIRTSFLGEFNVANFMLAIASLLMIGYPIHLLIKNSKRVSPVIGR---MQLVSHY 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +ID ++N++          L  I  H  G+   V G     G         +   +
Sbjct: 354 NPRVIIDYAHNSDS-----LKQCLISIRKHFGGKIWCVFG----CGGSRDKGKRAIMGRI 404

Query: 397 SLYNISHVWLSG-----FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++           +   + R       + Y         +  S     D V
Sbjct: 405 AEKYSDFVIITDDNPRFEDPKKIFKEILRGCTHLESIRYFPERKYAIRYSISRAKPNDTV 464

Query: 448 VV--KS 451
           ++  K 
Sbjct: 465 LIAGKG 470


>gi|297588145|ref|ZP_06946789.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
 gi|297574834|gb|EFH93554.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Finegoldia magna ATCC 53516]
          Length = 477

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 149/459 (32%), Gaps = 58/459 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  ++ DSR I     F AI G  +DGH FI  A++ GA  +V+  D+    G  
Sbjct: 18  NNDDEITNVTNDSRKIEKGGVFVAISGMEFDGHRFIDKAIENGANTIVITEDVTQIDG-- 75

Query: 82  SIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            I    VDD   AL +++         K  +I +TG+ GKTTT  M++  L  +      
Sbjct: 76  -INYIKVDDARIALAQISNVVCDFPSKKLRVIGVTGTNGKTTTSSMISHILEHLNSPCTN 134

Query: 140 IGSY-----NNHIGVPLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           IG+            P T   +              +D  + E   S  G        + 
Sbjct: 135 IGTNGTFIAKEKYETPNTTPEISEIDKILKLSVDKKIDNAVVEC--SSHGLYLHRLDGID 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV   ++  H+     +E    AK  +FE              +  +    +     
Sbjct: 193 FDVAVFNNLSMEHMDFHKNMENYFDAKMILFEN--------AKKKIANVDDEYGRKAKAR 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  Y+F     +DF+    +    +    +  + K+++ V +        N +  +  V
Sbjct: 245 FEDTYTFSLENESDFRAENVELIDGK----MHFEIKNVKFVLNRFALFDVYNAVAAIAAV 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++L  +++   KAL  F   E R +                +            +  +  
Sbjct: 301 NLLGYELEDIAKALESFTGVEARFEFVNNDRGINIVIDFAHT----------PKAFENIY 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--- 420
                 +R   +  M   G+ ++    ++ ++ +  N+  V  +        + +     
Sbjct: 351 KSVPNDKRKIAVYGMS--GDRTREIRHEVGKISAENNVFSVVTTDDPKFDTYENIADDIV 408

Query: 421 ------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +      +               GD V++  K 
Sbjct: 409 SGIEEANGEFVRIKDRKSAIKHAIEMADKGDFVLLLGKG 447


>gi|169334387|ref|ZP_02861580.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259104|gb|EDS73070.1| hypothetical protein ANASTE_00787 [Anaerofustis stercorihominis DSM
           17244]
          Length = 481

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 147/476 (30%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               D+L+       G   +    +N I  DSR       F  I G   DGH +I  A++
Sbjct: 1   MKLKDILEGYPHSLNGNKDIENIDINSIVFDSRKCEEGSMFVCIVGYETDGHKYIDSALK 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
            G  ++  + ++        I     ++   AL   A            +I ++G+ GKT
Sbjct: 61  LGVKVICHSEELEGYKD--DITYIKCENTRNALAYFANRFYSFPSKNLKLIGVSGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGV--------------PLTLARMPVDVDFGIFE 166
           +  ++      ++      IG+                             V  D     
Sbjct: 119 SFCDIAHTLFENLGFKTDYIGTLGRKNTKLEGQIIRTTPEITELTKDFSDMVKNDVDYCF 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L +S  G +      +  +I V + ++  HL     +EE   AK +++  +++   I ++
Sbjct: 179 LEVSSHGLVLDRVSFLNFYIGVFSNLSMDHLDFHKTMEEYYQAKKKLYYMVDRFSVINID 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D                K + SFG+ + +D+++   +    +S   +       + V +
Sbjct: 239 DDYGHRLY---NELKEDKKDVISFGEKEQSDYKITIKELSLSKSSFTLTKGNNKYDFVIN 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+   + I        +   +A+  +H             N     + ++ +
Sbjct: 296 SIGKFNIYNVTPAIIIALEEGIGYEKIKEAILRYHGT-----------NGRIERVAEDIF 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                +  A   +L  I      +   V G     G         +   +S     ++ L
Sbjct: 345 IDYAHTPDAMEKILKLIREVSSKKITLVFG----CGGNRDHGKRPIMGSVSEKYADNIIL 400

Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +  + + +                     +  D ++V+V  K 
Sbjct: 401 TMDNPRKEKNEDIIKDILNGIKNKDKTEIIYDRKEAINKAVRNKKDDEIVLVLGKG 456


>gi|258645238|ref|ZP_05732707.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
 gi|260402588|gb|EEW96135.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Dialister invisus DSM 15470]
          Length = 499

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 163/488 (33%), Gaps = 55/488 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+A     +    Q  +  ++ DSR++     FF ++G H DGH+F   A + 
Sbjct: 1   MKQLIDLLKATPIERMEGNSQVRIIDVTADSRAVETGSLFFCLRGEHVDGHNFANMAAEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++    +  +     + +  V D   A+  +          K  +IA+TG+ GKTT
Sbjct: 61  GAAAIIAEKKIDVA---SDVTIIYVADTRKAMEDIVPYFFDYPSKKMRMIALTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFE 166
           T  +++  L  +      IG+ +  IG               +   L +M  +    +  
Sbjct: 118 TTHVISHILHHVGYKTGVIGTVHALIGDKEIPTHNTTPDVIDLQRILYQMLKENVTHVC- 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--- 223
           + +S    +           AV T +   HL     ++  A AK+ +F+ +     I   
Sbjct: 177 MEVSSHSLVMGRVIGCEFDTAVFTNLTEDHLDYHKTMDNYAKAKSILFKMVSDKDQIKDG 236

Query: 224 ---FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              ++N DD +  ++           + ++G + N D +        + S  ++QL  K 
Sbjct: 237 KSAWINSDDPYAAVMSNAISDPDFCQVSTYGFNGNPDLKASDVHFSGKSSSFKIQLGEKR 296

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG     N++  +G       D+     ALS F    GR +      +     
Sbjct: 297 YVIKTKLIGRFNVYNVMAAIGAALSEGVDIKDIQAALSDFVSVAGRFELIEEGQSFSVVV 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               + +           +L+      +GR I   G     G         +   ++   
Sbjct: 357 DYAHTPDG-------LEKILTTAKEIAKGRLITCFG----CGGDRDKLKRPIMGRIAANY 405

Query: 401 ISHVWLSG-----FHVLALKDALPRSIH----------VHYSETMDGLFLFIQSSLVDGD 445
              V ++           +   +   +                       +  S   + D
Sbjct: 406 SDVVVITSDNPRTEDPEEIIREIAAGVQDISQHKSNLLYKTVTDRRAAIQYALSIAHNQD 465

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 466 IVLIAGKG 473


>gi|297530718|ref|YP_003671993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
 gi|297253970|gb|ADI27416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. C56-T3]
          Length = 489

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +AP   FF +KG   DGHDF   AV + 
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVAPGSLFFCLKGFTVDGHDFAEEAVARK 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  LA A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++        K    IG+ +  +G               +       + E      + 
Sbjct: 116 TSIMEQIARKAGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +      +    I ++G  + +D    + +  +      +     S  V   
Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRITAGGMAFRLCTPHGSAAVETK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L            ++T   AL+   P  GR +      N         + 
Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++         + L  +    +     V+G     G         L   +++        
Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDRSKRPLMAQVAVRYADVAIF 404

Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +   +   +             +    +      +GDVV++  K 
Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461


>gi|305664538|ref|YP_003860825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
 gi|88708555|gb|EAR00791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maribacter sp. HTCC2170]
          Length = 487

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/476 (15%), Positives = 149/476 (31%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +   ++       V  +  DSR +   + F AIKG   DGH FI  A+  
Sbjct: 1   MKLLKDILFGVGLTAVSGSTNLMVGTLCFDSRKVKLDDVFVAIKGTLTDGHKFIEKAIDS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V  T  +       +    VD    AL  +A            ++ ITG+ GKTT
Sbjct: 61  GAVCIVCET--MPEQLVNGVTYVEVDSGNKALAIMASNYYDNPSKNLKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFEL 167
              +L             I +                           +  +       +
Sbjct: 119 ISSLLYQLFKKAGFKVGLISTIKIMVDDKEYATSHTTPDAMTINEHLDLMNEEGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +    A+ T +   HL       E    K  +F+ L K      N 
Sbjct: 179 EVSSHGIHQKRTEGLVFEGAIFTNLTHDHLDYHKTFAEYRDTKKSLFDKLPKNAFALTNV 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A      +++     AD++ +  +   +   ++V       +++   
Sbjct: 239 DDKNGLVMLQNTAARK----FTYALKSYADYRAQILENQFDGQLLKVDDDELWTKLI--- 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N    L I +         ++ L +    +    R++  +++   T I + Y 
Sbjct: 292 ----GHFNAYNVLAIYATADLLGLEKLETLRLLSELDNVDGRFQYYISKEKITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  +  +    E     V       G+  +S    +  + S  +   ++ S
Sbjct: 347 HTPDALKNVLETIGTLRTGNENVITVV----GCGGDRDKSKRPVMGNIASQMSNKTIFTS 402

Query: 408 G----FHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + +           +   E  +             D+++V  K 
Sbjct: 403 DNPRTESPSVIIEEMEAGVEPQNVKKILSIENREQAIKTACQLATANDIILVAGKG 458


>gi|254464278|ref|ZP_05077689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
 gi|206685186|gb|EDZ45668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium Y4I]
          Length = 495

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/460 (15%), Positives = 142/460 (30%), Gaps = 36/460 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74
           G +        + G+++DSR +     F A+ G    G  FI  A++KGA  ++ +    
Sbjct: 14  GLTARGGADPQIRGLAVDSRDVREGYLFAALPGSQVHGAKFIPAALEKGASAILTDAAGA 73

Query: 75  ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +      +  V+D    L   A         T++A+TG+ GKT+    +    +
Sbjct: 74  GIAAKVLDESHAALVVVEDPRQTLAYAAALWFGGQPQTVVAVTGTNGKTSVATFVRQIWT 133

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFL 178
            +      +G+          LA    +            + G+    +  S  G  +  
Sbjct: 134 ELGHEAVNMGTTGIEGAWSYPLAHTTPEPITLHRALAAAAEAGVTHAAMEASSHGLDQRR 193

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD-SFFELLKA 237
              V+   A  T     HL      E   +AKA +F  +     + +   +      ++A
Sbjct: 194 LDGVQLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPDEGVAVINMNDPRGAEMRA 253

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            + A G + I       +      ++    +        +   + +   G          
Sbjct: 254 VAAARGQEVISVGRGLGDLSLLGLRYDGTGQDMRFAWHDKPYQVRLNLIGGFQ-----AE 308

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +  A  +   +             R + A  +   + +   Y   P ++    
Sbjct: 309 NVLLACGLAIAGGEDPERVFETLPHLTTVRGRMQLAAERDNGSAVFVDYAHTPDAV---A 365

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
           S +  + PH  GR IA++G     G    +    L    +  N   V ++          
Sbjct: 366 SAIKALRPHVLGRLIAIVGA----GGDRDTSKRPLMGQAAHENADVVIVTDDNPRSEDPA 421

Query: 413 ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKS 451
           A++ A+                 L     L  GD +++  
Sbjct: 422 AIRAAVKGGAPGCIEIGDRAEAILRGADMLGPGDALIICG 461


>gi|167465143|ref|ZP_02330232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 460

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/476 (15%), Positives = 138/476 (28%), Gaps = 53/476 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++    ++   I       V+G+ IDSR I   + F  I G   DGHDF   AV  GA 
Sbjct: 3   LNEFASLLKTSQIVGDETVEVSGVQIDSRKIKRGDLFICISGLVSDGHDFAGKAVDNGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            +VV   +      +++P   V +   A+   A            II +TG+ GKTTT  
Sbjct: 63  ALVVERRL-----DVNVPQILVKETRHAMALFAAHFYGYPAHDMKIIGVTGTNGKTTTTY 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELG 168
           ++   L         +G+    IG                          D D+ + E+ 
Sbjct: 118 LIEQILRDQGFITGLMGTIQVKIGSEYYGVERTTQEALDIQKNLAAMREKDTDYCVMEVS 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIF 224
              L   R      R    V T +   HL     ++      A   + +     +     
Sbjct: 178 SHALDFGRVKGIPFR--SGVFTNLTQDHLDYHKTMDNYRLAKAQLFSRMGNDFVQDEKQR 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +        L    + ++G  K  D +    +  +E +   +     +  + 
Sbjct: 236 SYAILNVDDEASETFQRLTSAEVITYGIEKECDVRASNIRITAEGTEFTLTTFEGTENIR 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +         ++   K+L+     +    R         + ++ +
Sbjct: 296 MKLVGKFNVYNALGAIAATLAEGISLEAIKKSLAE---VDSVPGRMEVVSEGQDYLVLVD 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +          + LS +    EG    V G     G         L   ++     H+
Sbjct: 353 YAHTPDG----LENTLSTVKEFAEGHVYCVFG----CGGDRDRTKRPLMGKVTAKYSDHL 404

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +++  +                + +A                           DVV
Sbjct: 405 FVTSDNPRTEDPAAILEDIVPGIVEAGLSEDRFEIIVDRRLAIQKAIEVASPKDVV 460


>gi|329925761|ref|ZP_08280547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328939641|gb|EGG35986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 503

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 155/484 (32%), Gaps = 50/484 (10%)

Query: 1   MNPLWTFHD--LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  D  +L+ I G          +  +  DSR I P   F  + G H DGHD+  
Sbjct: 1   MI-LQSLTDRLILKKITG-----STSADITNLETDSREIRPGGVFVCVPGFHVDGHDYAE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
            A++ GA  +V   ++    G  ++    V D    L  LA A       +  +I ITG+
Sbjct: 55  QAIRNGAVAIVAERELSGLPG--NVTHITVPDTRRILPILANAFFGDPTRQLKLIGITGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE- 166
            GKTTT  M+   L+  ++    IG+    IG          P T+  M           
Sbjct: 113 NGKTTTTHMVDQILNDARRKTGIIGTLYMKIGNHVEKTLNTTPDTIQLMRYFHTIISHGG 172

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L +S  G              V T ++  HL     +E   + K  +F  L  +  
Sbjct: 173 EYGVLEVSSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHQTMESYRNTKELLFAQLGNSNR 232

Query: 223 IFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                     +   +  +A      I ++G    AD +  +     E      +    S 
Sbjct: 233 DMQKKAVLNADDAASSYYAKRTSAQIITYGIQNQADVRATQIHHSREGCVFHAETPWGSS 292

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G H   N L  +    +    ++    +L  F    GR +  +    + F  +
Sbjct: 293 DVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRGSLEQFAGVHGRFQEIQ--TGRRFGVV 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++N +        + L        G+ I V+G   E           +   ++    
Sbjct: 351 VDYAHNPDG-----LKATLQSAKAITSGKMICVMGCRGE----RDRSKRPIMADIAASYS 401

Query: 402 SHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +V  +  +         + + L       S +                   D D +++ 
Sbjct: 402 DYVLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRIIIT 461

Query: 451 SSNS 454
               
Sbjct: 462 G-RG 464


>gi|310826112|ref|YP_003958469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
 gi|308737846|gb|ADO35506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Eubacterium limosum
           KIST612]
          Length = 498

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 154/466 (33%), Gaps = 48/466 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P+  +  I+ +S+ + P   F AI+G   DGH +I  A+ +GA LV+   D+  
Sbjct: 19  EVRNNNPEIDIEHIAYNSQKVVPNSMFVAIRGLKTDGHKYIGDAISRGAILVIYEHDLDE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V +    L  ++           +I  +TG+ GKTT   ML        
Sbjct: 79  YQD--DIMYVKVKNARHMLGTMSSRFYGHPSEALSITGVTGTNGKTTITHMLKSIFQKDG 136

Query: 135 KTYACIGSYNNHIGVPLTLA-----------------RMPVDVDFGIFELGMSHLGEIRF 177
           +    IG+ NN IG  +                     +       + E+  SH  ++  
Sbjct: 137 RKCGLIGTINNQIGDEIIDNAGRTTPDSLEVQEIISEMVEAGCQNLVMEV-SSHALDLDR 195

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +  +      + + +   HL      E    AKA++F    K   I  +    + + L  
Sbjct: 196 VNGVA-FDYGIFSNLTQDHLDYHKTFENYFEAKAKLFTYTSKANIINCDDV--WGKKLYD 252

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +YS+G +   DF  R  K   E +   +  +    E+     G  M  N +
Sbjct: 253 RCAQKKGVAVYSYGLNPECDFYARDMKYSIEGTRYTLVTKDGEEEIFISIPGEVMVYNSM 312

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +    ++   +AL+     EGR +R              +       S  +  
Sbjct: 313 AAIINALLEGISIEVIKEALASMSGVEGRMERLDLDTEF-------DIIIDYAHSPDSLE 365

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
            +L  +    +G+   V G               +   ++     HV ++          
Sbjct: 366 RLLKSVKTMYDGKVYLVFG----CNGDRDKEKRPIMGRIAGEFADHVIVTSDNPASEDPQ 421

Query: 413 ALKD--ALPRSIHVHYSETMD---GLFLFIQSSLVDGDVVVV--KS 451
           ++ D  A   +      ET+        +  +    GDV+V+  K 
Sbjct: 422 SIIDTVAAAVAEKTDACETVLRRWDAIYYAATLPKAGDVLVLAGKG 467


>gi|163781929|ref|ZP_02176929.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883149|gb|EDP76653.1| UDP-MurNac-tripeptide synthetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 465

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 85/449 (18%), Positives = 153/449 (34%), Gaps = 52/449 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
              GI+ DSR +     FFAI+G  +DGH+F+  A+++GA  VVV  D+ A        V
Sbjct: 12  EAQGITADSREVREGYVFFAIRGTRFDGHEFVQEALKRGALAVVVERDVEAVQ-----RV 66

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V++    L + A     R      ++ +TG+ GKTTT  +L   L         +G+ 
Sbjct: 67  IKVENTRKTLAESAHLFYGRPSESLKVVGVTGTNGKTTTTYILESILKKSGSHAGLMGTI 126

Query: 144 NNHIG-----------VPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              +G            P+T  R             + E+  S     ++          
Sbjct: 127 QYRLGDKVFGSGRTTPDPITWHRTLREMVGSGATHVVAEV--SSHALDQYRVWGTEFEAV 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E+   AKA +F   +    +    DD + + L        +   
Sbjct: 185 IFTNLTQDHLDYHRDMEDYFRAKARLFFDYKYRFAVVNT-DDPYGKRLARDLGDRALTYG 243

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                 +    ++  +K   + S + V  +GKS     + IG   A N+   L     + 
Sbjct: 244 -----REGETLRIEDFKTGFDGSELRVSFKGKSFRFHSNLIGDFQAYNLSAALCYTLEVG 298

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +   +AL         G+      ++GF  ++D ++  +        +VL  +    
Sbjct: 299 IDPNAIQEALKD---VHVPGRFEVHRSDRGFIAVVDYAHTPDA-----MDNVLRTMRRLT 350

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G         L    +      V ++  +            +   +
Sbjct: 351 KNRVICVFGA----GGNRDRGKRPLMGKSAEKWSDVVIITSDNPRDEEPERIIEDILKGV 406

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                V              +   +GD+V
Sbjct: 407 EDKGKVKVIPDRREAIAEALNIAKEGDIV 435


>gi|315125598|ref|YP_004067601.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
 gi|315014111|gb|ADT67449.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas sp. SM9913]
          Length = 492

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 139/478 (29%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   H +L+    H      +  VN + +DSR + P + F AIKG   DG  FI  A++ 
Sbjct: 1   MRDLHTILK----HLEIDAARLMVNELRLDSRDVKPGDVFVAIKGHQLDGGHFISKAIEN 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  ++ +            P++ V ++   L  LA     +      ++ +TG+ GK+T
Sbjct: 57  GASAIIADRLCEFESDFE--PLYLVSELNKKLPVLASQFYQQPSKHLDLVGVTGTNGKST 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T  M+     +               G P  L  +       +                 
Sbjct: 115 TTAMIAHL--AQFCHTQAAIIGTLGYGHPDNLTPLQNTTPSAVDLQRILSDLKNEQHQLV 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++          AV T ++  HL     ++    AK  +F   +    I  
Sbjct: 173 AMEVSSHGLVQHRVDQCYFKAAVFTNLSRDHLDYHGDMQSYGDAKLMLFRDFDADHVILN 232

Query: 226 NYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D    + ++  S    I     +              +  +     ++      + + 
Sbjct: 233 QDDGQAEQWIEKYSFNSLICYGRKNLAPKNAQFVYFSDVQYSATGISAQLTTSWGDVAIK 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+   L  +  L   +   +       P  GR + +              
Sbjct: 293 SPLFGEFNLYNLTAALATLLALGYPLTQLVAGCEYLQPVAGRMQAFTAPSMPTCVVDYAH 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L  +  H  G    V G     G         L    +      V
Sbjct: 353 TPDALAL-------ALQALQQHVPGGVSCVFG----CGGDRDKGKRVLMAQAAEQFADKV 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L    + H          F   +   G+V+++  K 
Sbjct: 402 IITSDNPRSEDPNDIINDVAAGLEHPENAHLEADRGAAIQFAIDNAKAGEVILIAGKG 459


>gi|325295151|ref|YP_004281665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065599|gb|ADY73606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 486

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 152/480 (31%), Gaps = 60/480 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  I     GI     +  I+ DSR + P   FFAI G   DG+ FI  A++KG
Sbjct: 1   MKLKKLLNHIGISYEGI--DLEILSITDDSREVIPGSLFFAITGFSTDGNKFIPEAIKKG 58

Query: 65  AGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           A  V+ +   V  +      +P   V D+      +          K  +I +TG+ GKT
Sbjct: 59  AVAVISDNAEVVKLYSKKYKVPFIYVKDIREKEALIVSKFFGEPSKKLKVIGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------------MPVDVDF 162
           TT  ++   L+ +    A IG+     G P                       +   ++F
Sbjct: 119 TTSYIIYNVLNKLGHKTAIIGT--VEYGTPYKRKAASRTTPSSLEYNKLLREFLDQKIEF 176

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  S  G        ++   A+ T +   HL     I     +K ++F     T +
Sbjct: 177 VVSEV--SSHGLELHRVTGIKFEGAIFTNLTQDHLDFHKDIYGYFLSKEKLFF---LTKS 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +   D  F  + +   A+    + ++GK+     +  + K+   +  + ++ +   ++
Sbjct: 232 ISVINIDDPFGKVLSGLRAIFPCELITYGKNGKVKIENVENKKFGSEITLRLENKRYVIK 291

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               G           +L +     A+    +                           I
Sbjct: 292 TNLKGEYNAYNVAAAFSLLVSLGFKAEEIKDLFESIKVPG---------RLEEVVENVFI 342

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +         VL+ +S   +G+ I V G     G             ++     
Sbjct: 343 DYAHTPDALE-----KVLTVLSQIKKGKLITVFG----CGGDRDREKRPFMGKVAEKFSD 393

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +   +     V                    D+V++  K 
Sbjct: 394 RVIITNDNPRSEEPSKIIEDILSGIENREKVIVIPNRKEAIFKALEEKRGNDIVLIAGKG 453


>gi|333029401|ref|ZP_08457462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
 gi|332739998|gb|EGJ70480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d
           iaminopimelateligase [Bacteroides coprosuis DSM 18011]
          Length = 486

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 88/474 (18%), Positives = 159/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ I+   I    Q  +  I IDSR +  Q  F A++G   DGH +I  A+++GA 
Sbjct: 3   IENLIKGIETKKIIGPVQNDIIDIQIDSRGVKKQSLFAALRGTQVDGHQYINQAIKQGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++     +    +  I    V     AL  LA         K  ++ +TG+ GKTT   
Sbjct: 63  AILCED--LPEQKNKDITYIQVPHSEAALGILASTFYDNPSSKLKLVGVTGTNGKTTVAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMS 170
           +L      +            Y    +       P  +    +  D          + +S
Sbjct: 121 ILYKTFKKLGYKAGLLSTVCNYIDDEALETTHTTPDAVTINKLLHDMVLRGCDYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     I     AK E F+ L K     +N DD 
Sbjct: 181 SHAIDQKRISGLKFAGGIFTNLTRDHLDYHKTIANYIKAKKEFFDNLPKNAFSLVNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     I+++      DF+ R  +         + L+  + +VV    G 
Sbjct: 241 NGMVMVQNTKSA----IHTYSLRSLCDFKARVIESHFNG----MILEINNTDVVVQFTGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L   G   +L    D  + A+S      GR +  +              Y   P
Sbjct: 293 FNVYNLLAVYGTACLLGQKADEVLIAISTLKSVSGRFETLQAPKGYTVIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  I   G+G+ I V+G     G         L    S+ N   V ++  +
Sbjct: 349 DALTNVLTTIHDI-LDGKGKVITVVGA----GGNRDKGKRPLMAKESIKNSDTVIITSDN 403

Query: 411 ---------VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  + D L      +V   E                DV+++  K 
Sbjct: 404 PRFEDPQEIIKDMLDGLNTEEKQNVLTIENRRDAIKTACMLAKTNDVILIAGKG 457


>gi|110803799|ref|YP_699145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
 gi|110684300|gb|ABG87670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens SM101]
          Length = 484

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 91/470 (19%), Positives = 168/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + ++    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+ +  +   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-EVEDFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   ++   + LS      GR +      N  +  +ID ++  + 
Sbjct: 297 YNVYNSLGCIICAYNLNIPMNKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +      R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTRNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|229541204|ref|ZP_04430264.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
 gi|229325624|gb|EEN91299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus coagulans 36D1]
          Length = 485

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 141/458 (30%), Gaps = 48/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +  D+R +     F  IKG   DGH F + A ++GA  ++    +      + I
Sbjct: 19  NPEITELVQDNRLVTKNSLFICIKGYTVDGHKFAVDAAKRGAAAILAEKPV-----DVDI 73

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V +   A+  LA     +   K  ++ ITG+ GKTTT  ++        +T   IG
Sbjct: 74  PVIIVRNTKRAMALLADRFYGQPSRKFRLVGITGTNGKTTTSHIIEKIYRDAGRTTGLIG 133

Query: 142 SYNNHIG---------------VPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    IG               +  T   M    V   + E+  S    +    H     
Sbjct: 134 TMYMKIGDETLETKNTTPDSLTLQKTFHEMNARGVTDCVMEV--SSHSLVEGRVHGCDYD 191

Query: 186 IAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           IAV T +   HL     + E   A +      G             +  +    +   + 
Sbjct: 192 IAVFTNLTQDHLDYHKTMAEYRRAKSLLFSQLGNSCPQDKPKYAILNADDAASKEFEQVT 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G   +ADF        +  +   +    +  EV     G     NML  +   
Sbjct: 252 AVPVITYGIDHDADFMAENIDMHARGTTFTLVTPFEKREVRLKLAGKFSVYNMLAAIAAG 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    +D+ IK         GR +      +         + ++         +VL  I
Sbjct: 312 VVSGVPLDSVIKTAEAMEGVRGRFELVNGGQDFSVIVDYAHTPDS-------LENVLKTI 364

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDAL 418
                 +   V+G     G         +   ++     +   +  +       A+   +
Sbjct: 365 RQFARKKIFVVVG----CGGDRDKTKRPVMAQIACKYAHYPIFTSDNPRSEDPIAILREM 420

Query: 419 PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            + +     E                  GDVV++  K 
Sbjct: 421 EKGVEGEQYECIPDRREAIKTAIFRAEAGDVVLIAGKG 458


>gi|182626138|ref|ZP_02953898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
 gi|177908575|gb|EDT71100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens D str. JGS1721]
          Length = 484

 Score =  143 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 92/470 (19%), Positives = 167/470 (35%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + ++    + T +   HL      E   +AK ++FE    +       D  
Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL--DDPY 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++K          + +F   K +DF+  + K  S  S  +V L+    E   +  G 
Sbjct: 238 GANIVKDIEERGVKTKVSTFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPGE 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L  +     L   +D   + LS      GR +         +  +ID ++  + 
Sbjct: 297 YNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKKLPYSIIIDYAHTPDG 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                  ++LS +    + R I+V G     G+  +     + ++    +   +  S   
Sbjct: 356 LE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDNP 407

Query: 409 ---FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D +      +               +  ++GDV+V+  K 
Sbjct: 408 RSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|47779257|gb|AAT38525.1| MurE [Bartonella bacilliformis]
          Length = 483

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 147/457 (32%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
             +    + GIS +SR I P   F A++G   DG  +I  A+++GA +VV + D VA   
Sbjct: 14  NNLASIKITGISANSRQILPGYVFVALQGNKGDGRHYINDAIKRGARVVVTDFDFVAE-- 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +LS+PV  V DV   L   A         T++A+TG+ GKT+    +      +    A 
Sbjct: 72  NLSVPVLQVSDVRHNLALAAARFYSTQPETVLAVTGTSGKTSVVSFIRQIWQHVGFCAAS 131

Query: 140 I-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPH 185
           I              +     P+ L R+  +  D G+    L  S  G  +     +   
Sbjct: 132 IGTVGVVSPKRNDYGSLTTPDPVMLHRLLYELADEGVTHATLEASSHGLNQSRLDGINLA 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A  T +   H+   + +++   AK  +F+ L       L   D  +            +
Sbjct: 192 AAAFTNLGRDHMDYHACVKDYLRAKMRLFDTLLPPDAPALIMADDGYSQEVINHVTQAGR 251

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G+        R   + S+Q                  +       +   L    +
Sbjct: 252 RALTIGRKGQFIKINRIEHRRSKQYVECRIENDVY----TFDLPLVGHFQVTNALMAAGL 307

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                 ++ K  S     +G   R            +   Y   P +++  +       P
Sbjct: 308 AITTGSSSDKVFSSLKKLKGAPGRLELVSKTKDNASVYVDYAHKPEALEQVLLAA---RP 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
              GR I V G     G         L   L L     V ++  +            +  
Sbjct: 365 FTPGRLIVVFG----CGGDRDQRKRPLMGKLQLDKADIVIVTDDNPRTEEPEKIRQDILQ 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A P ++ +           +    L  GD +++  K 
Sbjct: 421 AAPGALEI---ADRSEAIYYAVGLLEAGDTLIIAGKG 454


>gi|329954174|ref|ZP_08295269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
 gi|328528151|gb|EGF55131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides clarus YIT 12056]
          Length = 482

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 164/476 (34%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+AIQ   +    +  + G++IDSR +A    F A++G   DGH +I  A+++G
Sbjct: 1   MKLTELLKAIQPVQVIGSTEKDITGVNIDSRLVAAGHLFMAMRGTQTDGHAYIPTAIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+     +    +  I    V D   A+ K+A        SK  ++ +TG+ GKTT 
Sbjct: 61  AIAVLCED--MPEEPNPDITYIQVKDSENAVGKVATTFYGDPTSKMELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y +   VP                   D       + 
Sbjct: 119 ATLLYNTFRYFGYKVGLISTVCNYIDDQPVPTEHTTPDPVTLNRLLGEMADSGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK + F+ + K+     N D
Sbjct: 179 VSSHSIAQQRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKSAFSLTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + +     +Y++     +DF+ +  +   E     + L   + E+    I
Sbjct: 239 DKNGLVMTQNTRS----RVYTYSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS  HP  GR    R             + +A
Sbjct: 291 GKFNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVTGRFDSIRSPKGITAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL+     G G+ I V+G     G         +    S      V ++ 
Sbjct: 351 LVNVLNAIHDVLA-----GRGKVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +                         GDV++V  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDKDDLEKTISITDRKYAIKTACLLAQPGDVILVAGKG 457


>gi|160915017|ref|ZP_02077230.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
 gi|158432816|gb|EDP11105.1| hypothetical protein EUBDOL_01024 [Eubacterium dolichum DSM 3991]
          Length = 493

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 152/455 (33%), Gaps = 40/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+  + G+ +DSR   P + +F + G  +DGHDF+   + KG   +V    +       
Sbjct: 17  APEIEIEGLCLDSRQAKPNDIYFCMSGIMFDGHDFVEDVIAKGVKAIVHAKPI--EHMHK 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    V++V   LN++A            +  +TG+ GK+T   ++    S        
Sbjct: 75  GVAYIQVENVNRTLNRIASLFYQHPSRYMKVFGVTGTNGKSTITSIIQDVYSHFHPCGYI 134

Query: 140 IGSYNNHIGV----------PLTLARMPVDVDFGIFELGM---SHLGEIRFLTHLVRPHI 186
                 +  V          P+ + +   D+     E      S  G        V   I
Sbjct: 135 GTIAIRYGDVELPPSLTTPDPILIHKSMADMRAAGMEACALEVSSHGLELGRVMSVDFDI 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ + +   HL     IE    AK ++F  L+  G   LN DD++++             
Sbjct: 195 AIFSNLTYDHLDFHGTIENYLEAKKKLFTNLKSDGVAVLNRDDAYYQAFAD----CTNGR 250

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G   ++D++    +  ++ S   +    KS  +  + +  +   N+L  +  +   
Sbjct: 251 LVTYGIKHDSDYRAMDIQIQTDGSQFTLLHHEKSYTIKTNLVAMYNIYNLLGAIAGMCEA 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  +  L+     EGR +R                +   P  ++        I+  
Sbjct: 311 GIAIEDMLPYLASIKQIEGRMERIDEGQLFNVIVD----FAHTPDGLEKVFEYAKDITKE 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS 421
           G    IAV G          +    +   ++      + L+           + + +   
Sbjct: 367 GHS-IIAVFGSAG----KRDTKKRKVFGEIASKYCDSIILTEDDPRDEDAREIANEIKEG 421

Query: 422 IHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           I      + E           S    D V++  K 
Sbjct: 422 IKDTKNIFIEDRYNAIRQAIESAGAYDTVLILGKG 456


>gi|261407738|ref|YP_003243979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261284201|gb|ACX66172.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 502

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 159/486 (32%), Gaps = 54/486 (11%)

Query: 1   MNPLWTFHD--LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  L +  +  +L+ I G          +  +  DSR I P   F  + G H DGHD+  
Sbjct: 1   MI-LKSLTERLILKTITGSL-----SVDITNLDTDSREIRPGGMFVCVPGYHVDGHDYAE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
            A++ GA  +V   ++     S ++ +  V D    L  LA A       +  +I ITG+
Sbjct: 55  QAIRNGAVAIVAERELSG--LSENVTLITVPDTRRILPILANAFYGDPTQRLKLIGITGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160
            GKTTT  M+   L+  ++    IG+    IG                +      +    
Sbjct: 113 NGKTTTTHMVDKILNDARRKTGIIGTLYMKIGNHAEKTLNTTPDTIQLMRYFHTMISHGG 172

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           ++G+ E+  S  G              V T ++  HL     +E   + K  +F  L  +
Sbjct: 173 EYGVLEV--SSHGLDMGRVRGCDFQTVVFTNLSHDHLDFHKTMESYRNTKELLFAQLGNS 230

Query: 221 GTIFLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               L       +   +  +A      I ++G    AD +        E      +    
Sbjct: 231 NRDMLKKAVLNADDDASSYYAKRTSAQIITYGIQNQADVRATHIHHTREGCAFHAETPWG 290

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S EV     G H   N L  +    +    ++   ++L  F    GR +  +    + F 
Sbjct: 291 SSEVNLKVHGAHNIYNALAAMTTCLLEGIPLEEIRESLGQFAGVHGRFQEIQ--TGRRFG 348

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++N +        + L        G+ I V+G   E           +   ++  
Sbjct: 349 VVVDYAHNPDG-----LKATLQSAKAITSGKMICVMGCRGE----RDRSKRPIMADIASS 399

Query: 400 NISHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +V  +  +         + + L       S +                   D D ++
Sbjct: 400 YADYVLFTADNPFSEDPEQIMAEMLGGLTSRESGNWEVVLDRKEAIQRAVEMAGDEDRII 459

Query: 449 VKSSNS 454
           +     
Sbjct: 460 ITG-RG 464


>gi|157803550|ref|YP_001492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia canadensis str. McKiel]
 gi|157784813|gb|ABV73314.1| hypothetical protein A1E_01845 [Rickettsia canadensis str. McKiel]
          Length = 478

 Score =  143 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 159/479 (33%), Gaps = 63/479 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+    L Q           Q  + G+S +S++I   E FFA+KG   DG+DFI  A+ K
Sbjct: 2   LFNLKQLFQ-----------QHNIKGLSTNSKNIKEGEVFFAVKGRTVDGNDFINDALNK 50

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA LV+ + +   +I      V  V+D+  AL ++      +    +IA+TG+ GK++  
Sbjct: 51  GAVLVITDNEKNTAIN----KVIYVEDLQKALYEVIEIFYPKKPKHLIAVTGTNGKSSVI 106

Query: 124 EMLTIAL-------------------SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163
             +                                  +  +++        +  + +++ 
Sbjct: 107 SYIAQLYSLLGEKAASIGTIGVEIFGCDNFINDVPELTTFDYLSFRKIAHNLAEIGIEYL 166

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            FE   S  G  +      + +IA  T+ +  HL      E    AK ++F        I
Sbjct: 167 AFE--ASSHGLDQTRLGENKVNIACFTSFSHDHLDYHHTKENYLLAKLKLFTNHLLPNAI 224

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D                   + G     D Q+ +     +   ++     +    
Sbjct: 225 SILNSDIEEIEFIKAYLNKHNIKFITVGI--KGDLQITRINSSLKGQNIDFTFNNRKYSF 282

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L+            D  I +L    P +GR ++         ++   
Sbjct: 283 NTPIIGSFQASNLLIAALSEYYTGVAFDEVIGSLVDVKPVKGRMQQIENTNIFVDYSHTP 342

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++       +K    + S++          + G     G         L   ++     +
Sbjct: 343 DALEKALLELKNIQVLGSKL--------NVIFG----CGGNRDKKKRSLMGQIAAKLADN 390

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   + ++ ++   E  +    +  ++L   D++++  K 
Sbjct: 391 VIITDDNPRLEDPKLIRAEIISGIDKANYIEI-ENREKAIKYGINNLNQDDILLIAGKG 448


>gi|301310868|ref|ZP_07216797.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
 gi|300830931|gb|EFK61572.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 20_3]
          Length = 486

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 148/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            +V         G  S     V D   AL  L             ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    +      V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +     V                   GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERVLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|163741580|ref|ZP_02148971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
 gi|161385314|gb|EDQ09692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phaeobacter gallaeciensis 2.10]
          Length = 494

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 142/459 (30%), Gaps = 34/459 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        + GI++DSR +     F A+ G    G  F   A+  GA  ++ +    
Sbjct: 13  GLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +   +   ++ +  V+D   AL   A         T++A+TG+ GKT+    +     
Sbjct: 73  QIVAELLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWV 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFL 178
            +      +G+          L     +                    +  S  G  +  
Sbjct: 133 ELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHGALAQAAAAGVTHAAMEASSHGLEQRR 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      E   +AKA +F  +     + +   D         
Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRA 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A   + + S G+    D  L   +  +    M      K  +   + IG   A+N+L+
Sbjct: 253 VAAARGQEVISVGR-GLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D       L       GR +      N      +D ++  +  +      
Sbjct: 312 ACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGA-TVFVDYAHTPDAVAT----- 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            +  + PH  GR +A++G     G    +    L    +  N   V ++           
Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAV 421

Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ A+                 L    +L  GD +++  
Sbjct: 422 IRAAVKGGAPDAMEVGDRAEAILRGVDALGAGDALLICG 460


>gi|324998160|ref|ZP_08119272.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Pseudonocardia sp.
           P1]
          Length = 352

 Score =  143 bits (359), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 92/228 (40%), Gaps = 23/228 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  + T  ++     G   G+  +     V  +  DSR   P   F A+ G   DGHDF 
Sbjct: 42  MIEM-TLAEVAAVTGGTLHGVSDEQAAVPVTAVEFDSRKAGPGALFLALPGERADGHDFA 100

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD----------------VLGALNKLAVA 101
             AV +GA  V+    + A   ++  P   V D                VL AL +LA  
Sbjct: 101 AGAVTRGATGVLAGRPVDA--PAVVAPPAEVRDAHTYLGSVDPDGHGAAVLAALGRLARH 158

Query: 102 ARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    ++ +TGS GKT+TK++L   L+   +T A   S+NN +G P T  R     
Sbjct: 159 VLGALPGLAVVGVTGSAGKTSTKDLLAAVLAPQGRTVAPPESFNNELGTPWTALRADAAT 218

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
              + E      G I  L  +  P I V+  +  AHL  F     IA+
Sbjct: 219 RHLVLEFSARGAGHIAALCAVAPPRIGVVLNVGSAHLGEFGSRAGIAA 266


>gi|261755387|ref|ZP_05999096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
 gi|261745140|gb|EEY33066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 3 str. 686]
          Length = 490

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELASGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE-- 166
           +         +      A IG+             +                  G+    
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|262067014|ref|ZP_06026626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
 gi|291379274|gb|EFE86792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium periodonticum ATCC 33693]
          Length = 485

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 152/455 (33%), Gaps = 46/455 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                 +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +       
Sbjct: 16  DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    +D++   L  LA       + K  II +TG+ GKT++  M+   +     T   
Sbjct: 74  -VSYVLIDEIRHKLGYLASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132

Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              Y     V               +    +   +++ + E+    L   R    ++   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+ T     N DD + + L  +      +
Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDTNNSVFNIDDKYGKKLYDEFIEDNPE 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I       + + +        +  +++++ + K  +V    +G     N L  + I   
Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIAVK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  ++ +S      GR +   C  +          Y   P ++   I     I  
Sbjct: 305 MGIKWEDILERISNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
               R I + G     G         +    +      V L+  +            +K 
Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKT 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++    +    +       +     D++++  
Sbjct: 415 GFAKNDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|126726614|ref|ZP_01742454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
 gi|126703943|gb|EBA03036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2150]
          Length = 495

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 165/472 (34%), Gaps = 42/472 (8%)

Query: 6   TFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +L L A+         +  + G+S+DSR +     F A+ G    G DFI +A+++G
Sbjct: 9   TLAELGLTAMGAQ------EAQITGLSVDSRLVKDGHLFAALPGVTAHGGDFIQYALRQG 62

Query: 65  AGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++ +          I +    +    D   AL   A           +A+TG+ GKT
Sbjct: 63  AAAILTDQKGAEIAKKEIEASGAALVIAQDPRQALAFAATLWFGAQPEIAVAVTGTNGKT 122

Query: 121 TTKEMLTIAL------SSIKKTYACIGSYNNHIGV----PLTLARMPVD-VDFGIFE--L 167
           +               ++   T    G+Y+   G     P+TL R+  D    GI    +
Sbjct: 123 SVASFTRQIWALLGFEAANVGTTGVEGAYSAPTGHTTPEPITLHRLMADMAHHGITHVAM 182

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +     ++   A  T     HL   +  E   +AKA +F  +     I +  
Sbjct: 183 EASSHGLEQRRLDGMQLAAAGFTNFTQDHLDYHADFEAYFNAKAGLFTRVLSEDGIAVVN 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +       ++      + + S G+ +NA  ++   +       +  +   ++ EV    
Sbjct: 243 RNDARFQDISRLAEKRGQEVLSVGRDENASIRIIAQRFEPMGQTVLFEYNDRTFEVKLPL 302

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A+N+LM  G+     AD +     L       GR +      N      +D ++ 
Sbjct: 303 IGGFQAENVLMAAGLAIASGADANEIFGVLPQLKTVRGRMELAATRKNGA-SIFVDYAHT 361

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +  +          + PH  GR I V G     G         L    +  +   ++++
Sbjct: 362 PDALAT-----ACRALRPHVLGRLIVVFGA----GGDRDKGKRPLMGQAAEAHADVIFVT 412

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +       ++ +   I            L    +L  GDV+++  K 
Sbjct: 413 DDNPRSEDPAVIRREVMDGCIEAIEVADRAEAILRGVDALGAGDVLLIAGKG 464


>gi|315924888|ref|ZP_07921105.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621787|gb|EFV01751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 519

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 163/478 (34%), Gaps = 50/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  ++L+              +  ++ DSR + P   F AI G   DGH F+  A+++
Sbjct: 31  LLTEEEILE-----VRNGDRTEAITDVAYDSRRVGPGAMFVAIFGFATDGHRFVEAAIEQ 85

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA ++V   D+        +    V D    L  +A         K T+  ITG+ GKT+
Sbjct: 86  GAAVIVHQADLARYHD--DVVYLKVTDCRRLLGHIASRFFGHPSEKITVTGITGTNGKTS 143

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----MPVDVDFGIFE---------- 166
           +   LT  L +  K  A +G+ +N IG  +   +        D    I E          
Sbjct: 144 STYFLTGILRAAGKKCARMGTIDNQIGDAVLDNKGRTTSESRDTQAFIAEAVAAGCSDLV 203

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S           V    A+ T +   HL      E    AKA +F+  +      +N
Sbjct: 204 MEASSQALDLDRLTDVHFDYALFTNLTQDHLDYHKTFEAYFEAKARLFD--QTEKAAIIN 261

Query: 227 YDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD +   L  +      K  I ++G+   AD++L      +  S   +Q   +   +  
Sbjct: 262 RDDPWGRKLINRIRERHPKLKIITYGEDPAADYRLSAVDCTTGGSTFTLQAGDEKETIFL 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G  M  N + T+        D      AL+     EGR +R +  L+         +
Sbjct: 322 DVLGRFMVYNAVGTIIAAREQGIDWAAIKAALADAPVVEGRMERIKTNLDFDIVVDYAHT 381

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +A         ++L  +     GR IAV G     G         L   ++        
Sbjct: 382 PDA-------LENLLKTVKELARGRVIAVFG----CGGDRDHGKRPLMGAIAAKEADFSV 430

Query: 406 LS-----GFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+          A+ D +  ++                 ++  +     DVV+   K 
Sbjct: 431 LTSDNSRSEDPEAILDDIEAAVRPITDQYTRIADRREATVYALTHARKDDVVIFAGKG 488


>gi|261219199|ref|ZP_05933480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261322260|ref|ZP_05961457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
 gi|260924288|gb|EEX90856.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M13/05/1]
 gi|261294950|gb|EEX98446.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M644/93/1]
          Length = 490

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLARCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 354 KPEALE-----NVLTSVRPFTTGRMIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|261752727|ref|ZP_05996436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
 gi|261742480|gb|EEY30406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 5 str. 513]
          Length = 490

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 143/473 (30%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++         G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELPPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+       +   +   E+    V+++         
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  Q     +     +   V  A    ++   K   G+       +       +  
Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|153809199|ref|ZP_01961867.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
 gi|149128175|gb|EDM19395.1| hypothetical protein BACCAC_03510 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 165/474 (34%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            + LL+AIQ   +       + GI+IDSR +   + F A++G   DGH +I  A++KGA 
Sbjct: 3   LNKLLKAIQPVQVTGESDIEITGINIDSRLVEAGQLFMAMRGTQADGHAYIPTAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+     +       I    V D   A  K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AVLCED--MPEEPVAGITYIQVKDSEDATGKIATTFYGDPTSKMELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM---PVDVDFGIFELGMS 170
           +L             I +  N+I             P+TL R+     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEAIPTEHTTPDPITLNRLLGKMADEGCKYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ + K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDMPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     ++F+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSNFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEDVLVALSTLHPVAGRFDAVRSPKGVTAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMRKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|23502307|ref|NP_698434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161619384|ref|YP_001593271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella canis ATCC 23365]
 gi|254704694|ref|ZP_05166522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 3 str. 686]
 gi|30316051|sp|Q8FZP0|MURE_BRUSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23348284|gb|AAN30349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis 1330]
 gi|161336195|gb|ABX62500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella canis ATCC
           23365]
          Length = 488

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 157/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELASGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE--LGMS 170
                 +      A IG+             +                  G+    +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|260430918|ref|ZP_05784889.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414746|gb|EEX08005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 493

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 153/456 (33%), Gaps = 36/456 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM----VA 76
                 + G+++DSR +     F A+ G    G +FI +A++ GA  ++ + +       
Sbjct: 17  GGADPEIAGLAVDSRQVKDGFLFAALPGTRVHGGEFIQYALRMGAAAILTDAEGARIAAD 76

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            + +    +  V D    L   A         T++A+TG+ GKT+    +    + +   
Sbjct: 77  ELAASDAALVVVQDPRQTLAYTAALWFGAQPRTMVAVTGTNGKTSISTFVRQIWTELGHM 136

Query: 137 -----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVR 183
                             +           +    + G+    +  S  G  +     V 
Sbjct: 137 AVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAEAGVTHAAMEASSHGLEQRRLDGVH 196

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A  +     HL   +  E   +AKA +F+ +       +   D              
Sbjct: 197 LTAAGFSNFTQDHLDYHATFEAYFAAKAGLFDRVLSQDGTAVINMDDPKGAAIRDIAQAR 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +T+ + G S +AD  L   +  +    +    +GK+ +   + IG   A+N+L+  G+V
Sbjct: 257 GQTVLTVG-SGDADLCLLNQRFDATGQDLRFAWRGKTFQTRLNLIGGFQAENVLLACGLV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                + +     L       GR +      N      +D ++  +  +       L  +
Sbjct: 316 IASGDEAEHVFDTLPHLTTVRGRMQLAATRSNGA-AVFVDYAHTPDAVAT-----ALQAL 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA- 417
            PH  GR IA++G     G    S    L    +  N   V+++          A++ A 
Sbjct: 370 RPHVMGRLIAIVGA----GGDRDSTKRPLMGRAAAENADIVFVTDDNPRSEDPAAIRAAV 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L    +L  GD +++  K 
Sbjct: 426 MAGAPDATEVADRAEAILRGIDALQPGDALLIAGKG 461


>gi|110800485|ref|YP_696545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
 gi|110675132|gb|ABG84119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clostridium perfringens ATCC 13124]
          Length = 484

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 97/471 (20%), Positives = 171/471 (36%), Gaps = 42/471 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +    I    +  V  I  D+R I   +AF  +KG   DGH FI  A++KGA 
Sbjct: 3   LKSLLKGLDYEVIKGNEESKVQNIRYDNRKIEQGDAFVCVKGFKVDGHSFIGDAIKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  D+        I +  V D   AL  ++         K  II ITG+ GKTT+  
Sbjct: 63  TLIVQEDVSV---QEDITIIKVRDTRKALAIMSSNYFGNPKDKLKIIGITGTNGKTTSAF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE---LGMS 170
           ++   L         IG+  N+IG               L  +  ++     E   + +S
Sbjct: 120 IIKSILEKAGFMTGLIGTIANYIGNKKVDAVRTTPESYELHELFKNMVDAGVEYCVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    + ++    + T +   HL      E   +AK ++FE    +       DD 
Sbjct: 180 SHSLELDRVYGIQFEEGIFTNLTRDHLDFHKTFENYYNAKFKLFERSNHSIINL---DDP 236

Query: 231 FFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +   +       G+KT  S F   K +DF+  + K  S  S  +V L+    E   +  G
Sbjct: 237 YGANIVKDIEERGLKTKVSAFSIEKESDFKAFEIKSHSNGSEFKVNLE-SIEEFSINIPG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N L  +     L   +D   + LS      GR +      N  +  +ID ++  +
Sbjct: 296 EYNIYNSLGCIICAYNLNIPMDKIKEGLSDVVIP-GRCELVAKEKNLPYSIIIDYAHTPD 354

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                   ++LS +    + R I+V G     G+  +     + ++    +   +  S  
Sbjct: 355 GLE-----NILSTVKAFTKNRMISVFG---CGGDRDKVKRPQMGKIGCELSDIAIITSDN 406

Query: 409 ----FHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +  + D +      +               +  ++GDV+V+  K 
Sbjct: 407 PRSEEPMDIINDIVKPLNYDNFVIEVNRKEAIRKAMNMALEGDVIVIAGKG 457


>gi|52425727|ref|YP_088864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia succiniciproducens MBEL55E]
 gi|52307779|gb|AAU38279.1| MurE protein [Mannheimia succiniciproducens MBEL55E]
          Length = 488

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 147/458 (32%), Gaps = 42/458 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI----GS 80
             +N +++DSRS+     F AIKG   DG  FI  A+  GA  V+   D           
Sbjct: 17  IKLNRMTLDSRSVRTGCLFVAIKGHSVDGRQFIPQAISAGASAVLKECDNADEHLQVSEQ 76

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             IPV     +   L+ +A           T++ +TG+ GKTT  ++L      + +K  
Sbjct: 77  NQIPVISYYHLSEHLSDIADQFYKAPSQHLTLVGVTGTNGKTTVSQLLAQWAQLLGRKPA 136

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRP 184
                 N   G     A                         + +S  G ++     +  
Sbjct: 137 VMGTIGNGLFGALKPAANTTGSAIEVQSSLADFVQQGADFAAIEVSSHGLVQHRIEALHF 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              + T ++  HL     +E  ASAK  +F  L     I    D+   + L+    A+ +
Sbjct: 197 AAGIFTNLSRDHLDYHHSMENYASAKKRLFSELSCQQKIINADDEIGVQWLRELPDAVAV 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++  ++    ++      S+ + +          +    IG     N+++ L  + 
Sbjct: 257 SCNPAYQPTQENWLKVTAVSFNSQGATITFNSSWGGAILTSRLIGAFNVSNLMLVLATLL 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   +D  +K +S      GR +    A           + +A           L    
Sbjct: 317 SLGYSLDELLKTVSQLTGVCGRMEMLHAAHKPTVIVDYAHTPDA-------LEKALQAAR 369

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
            H  GR   V G     G         L   ++     +V ++  +            + 
Sbjct: 370 AHCTGRLWCVFG----CGGDRDRGKRPLMAQVAERFADYVIVTDDNPRTEDRHQIVQDIV 425

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               R   V+     +        S V+ DV+++  K 
Sbjct: 426 AGFKRPESVNIVYDREQAIRTAVQSAVENDVILIAGKG 463


>gi|254714470|ref|ZP_05176281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M644/93/1]
 gi|254717368|ref|ZP_05179179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M13/05/1]
          Length = 488

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLARCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRMIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|198274312|ref|ZP_03206844.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
 gi|198272802|gb|EDY97071.1| hypothetical protein BACPLE_00456 [Bacteroides plebeius DSM 17135]
          Length = 485

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 152/476 (31%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L+A+    I       VNGI +DSR +     F A+KG   DGH++I  A++ G
Sbjct: 1   MKLENMLKAVNAQQIIGTTNLEVNGIHMDSRMVKNGFMFVAVKGTQADGHNYISKAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A ++V     +      ++    + D   A+ KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ATVIVCEQ--LPVQIESNVTYVQLTDTEEAVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALS---------SIKKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELG 168
             +L              S    Y    +       P  +          D       + 
Sbjct: 119 ATLLYNMFRLFGYKAGLISTVCNYIDGEAIPTDHTTPDPITLNQLLGRMADEGCKYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++     +     + T I   HL      E    AK   F+ L K      N D
Sbjct: 179 VSSHSVVQKRISGLTFAGGIFTNITRDHLDYHKTFENYLKAKKAFFDNLPKQAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A        +      DF+ +  +   +     + L   + EV    I
Sbjct: 239 DKNGTVMTQNTQAKVAA----YSLHSLCDFKGKVLEDSFDG----MLLDINNREVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  +  LS+  P  GR    R              Y  
Sbjct: 291 GRFNASNLLAVYGAACLLGKRPEDILVKLSMLRPVSGRFDAKRSPKGYTAIVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   +  + ++   G G+ I V+G     G         L    S      V ++ 
Sbjct: 347 TPDALVNVLEAIHEV-LRGRGQVITVVGA----GGNRDKGKRPLMAKESAQRSDKVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV+++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLSKDDMKKVISIVDRKEAIRTACMLAQPQDVILIAGKG 457


>gi|159896617|ref|YP_001542864.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889656|gb|ABX02736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 514

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 164/496 (33%), Gaps = 62/496 (12%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +F +LL  +  H         ++ ++ DSR + P   F AIKG H DGH +I  A+++
Sbjct: 1   MKSFAELLLHV-THQASGDHHVAISNVAYDSRKVTPGALFVAIKGVHVDGHRYIATALEQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV---- 117
           GA  VV +    A     +IP   V D   AL+ +A A       +  ++ ITGS     
Sbjct: 60  GAVAVVYDDPHQA--PPATIPSALVADAKVALSPIAAAFYDYPAQQLEVVGITGSKGKTT 117

Query: 118 -----------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---RMPVDVDFG 163
                             M T+     ++ +A     +    + +       +     + 
Sbjct: 118 TTFLTAAALEASGELVGFMSTVDFKIGQRQWANKTRQSTPEALEIQAMLREMVEAGCRYA 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-------- 215
           + E     L             +A+IT +   HL     +E+  + KA++F+        
Sbjct: 178 VVESTSHGLSPRWNRLGDCAYDVALITNVTHEHLDYHGTVEQYRADKAQLFQLLATSPSQ 237

Query: 216 ----GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
               G           +       + ++ A       S+     AD +  +    S+   
Sbjct: 238 KSILGQPTPVEKVAIVNADDPHAAQFRAAAGEQVRHLSYAIHAEADLRATEIVSTSKGLR 297

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                   +  +    +G     N+L  L +      D+  AI+ L       GR ++  
Sbjct: 298 FTAITPQGNFALNLQLVGTFYVYNVLAALSVCLARGVDLAAAIQRLEAIPGINGRMEQVE 357

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L Q F  L+D ++N +         V+S + P  +GR IAV G   E           
Sbjct: 358 --LGQPFSVLVDYAHNPDSFE-----QVMSMLRPLTQGRLIAVFGSAGE----RDLAKRP 406

Query: 392 LAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVH-----YSETMDGLFLFI 437
           +   ++      ++L+     A         +         +                  
Sbjct: 407 IQGQIAAKWCDLLYLTDEDPRAEDSLQILQEIAAGAKAEGKIIDQNCWLIPDRRTAIEQA 466

Query: 438 QSSLVDGDVVVV--KS 451
            ++   GDVV++  K 
Sbjct: 467 LATAQAGDVVLLLGKG 482


>gi|323488814|ref|ZP_08094054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
 gi|323397512|gb|EGA90318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Planococcus donghaensis MPA1U2]
          Length = 486

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 142/473 (30%), Gaps = 42/473 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL +I    +       +  ++IDSR I    AF  IKG   DGHDF   A  +G
Sbjct: 1   MNSKELLASIPYKQVKGPLPEHIEHLTIDSRDIKANSAFICIKGYTVDGHDFAQQAANQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A L++    M       +  V  V+     L  LA            +I +TG+ GKT+ 
Sbjct: 61  ATLIITEKPMTID----NATVVEVESTSRTLGLLAAKFYDYPSKLLHMIGVTGTNGKTSV 116

Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
             +L   L  +                    S N    V  T   +    D     + M 
Sbjct: 117 AGILHSMLMELGEKSALTGTIGFNLNGQLHPSANTTNDVLTTQQMIARARDEDCSHMTME 176

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G +      V    A+ T +   HL     +EE   AKA +F  L +         
Sbjct: 177 VSSHGLVLGRLAGVEFDTAIFTNLTHDHLDFHGTMEEYGHAKALLFSQLGQDLANQKQAI 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    +Y++G   +A FQ +  +     +   +        V    +
Sbjct: 237 LNADDPWSKELAKMTPHPVYTYGIQNDAQFQAKNIQLMHTGTSFTLTCVEGEFPVTMKLL 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L ++  +      +D  +KAL+   P EGR ++         F     + +A
Sbjct: 297 GEFNVSNALASIAALYAEGYTIDEILKALAKIAPVEGRMQKVEVEAPISIFIDYAHTPDA 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              ++ A             G            G         +          +V L+ 
Sbjct: 357 IEKAIDAVQDFKKSRIIFLVGT-----------GGNRDKTKRPIMA-AKASIADYVVLTT 404

Query: 409 FHVLALK--------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          +      +                    GD++++  K 
Sbjct: 405 DDPRDEAYDSILGDLEVGMTHSNFACIGDRAKAVEHAVEQAEAGDIIILAGKG 457


>gi|254702157|ref|ZP_05163985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis bv. 5 str. 513]
          Length = 488

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 142/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++         G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELPPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|254510373|ref|ZP_05122440.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534084|gb|EEE37072.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium KLH11]
          Length = 493

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 156/470 (33%), Gaps = 41/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L    +G   G  P   + G+++DSR +     F A+ G    G +FI  A++ GA 
Sbjct: 8   LSELALTARG---GANPD--ITGLAVDSREVKDGFLFAALPGTRVHGGEFIQFALRMGAA 62

Query: 67  LVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            ++ +          + +    +   +D   AL   A         TI+A+TG+ GKT+ 
Sbjct: 63  AILTDARGAEIAADELAASDAALIVTEDPRQALAGAAALWFGAQPQTIVAVTGTNGKTSV 122

Query: 123 KEMLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGM 169
              +    + +            +        +           +    + G+    +  
Sbjct: 123 ASFVRQIWTELDLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAAENGVTHAAMEA 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     V    A  +     HL      E   +AKA +F+ +     I +    
Sbjct: 183 SSHGLEQRRLDGVHLTAAGFSNFTQDHLDYHDTFEAYFAAKAGLFDRVLPEDGIAVINLG 242

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                   +      + I + G  + AD  L   +  +    +    +GK  +   + IG
Sbjct: 243 DPKGAEMRRIAEARGQNILTVG-PEGADLCLLNQRFDATGQDLRFSWRGKVRQTRLNLIG 301

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A+N+L+  G+V     D D     L       GR +      N      +D ++  +
Sbjct: 302 GFQAENVLLACGLVIAAGEDPDRVFDTLPHLTTVRGRMQLAATRSNGA-AVFVDYAHTPD 360

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +       L  + PH  GR IA++G     G    +    L    +  N   V+++  
Sbjct: 361 AVAT-----ALKAMRPHVMGRLIAIVGA----GGDRDATKRPLMGKAAADNADLVFVTDD 411

Query: 409 ----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +++ A +  +             L    +L  GD +++  K 
Sbjct: 412 NPRSEDPASIRTAVMLGAPDATEVGDRAEAILRGIDALQPGDALLIAGKG 461


>gi|95930736|ref|ZP_01313469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133216|gb|EAT14882.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfuromonas
           acetoxidans DSM 684]
          Length = 508

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 90/494 (18%), Positives = 163/494 (32%), Gaps = 71/494 (14%)

Query: 5   WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                ++  +  QG          ++ ++ DSR + P   FFA++G   DGHD+   AV+
Sbjct: 1   MKLSQIVADVTSQGEL---AADVEISHLAYDSRCVRPGTLFFALRGVLVDGHDYAKSAVE 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA  VVV   +        I    VDD   A+ + A            I+ +TG+ GKT
Sbjct: 58  RGAVAVVVEQPVD---LPDEIVQVVVDDSRYAMARCAACFYDYPAQGMLIVGVTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGI 164
           T   +L   L     T A +G+ +N +G     A                      D  +
Sbjct: 115 TMTYLLESVLKQAGYTPAVVGTISNRMGDDAVEAEHTTPESLDLQRILAEFKSQGADALV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222
            E+  SH      +  L    +AV T + P HL     +E    A  +      +    T
Sbjct: 175 IEV-SSHALMQSRVVGLT-FDVAVFTNLTPEHLDYHKNMESYFAAKTRLFKEPQIYGDFT 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  + +        S G  + AD ++   +Q  + +   ++     + 
Sbjct: 233 AVVNTDDPYGAKLVRELNEP-----LSVGMHRGADVRVCDVEQTMQGTVATLETPQGEIT 287

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G    +N+L  +G   +L   + T  + L+  +   GR +     L        
Sbjct: 288 VRSPLVGPFNLENLLCAVGAGLVLDLPITTIEQGLAAANRVPGRLEPVDNTLGALIVVDY 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +         A    L  ++     R I V G     G    +        ++     
Sbjct: 348 AHT-------GDALAKALEAMAALKPQRIITVFG----CGGDRDTLKRPAMGEVAGRYSD 396

Query: 403 HVWLSG-----FHVLALKDALPRSIH------------------VHYSETMDGLFLFIQS 439
              ++       +   + D +   I                       E      ++  +
Sbjct: 397 LSIVTSDNPRTENPAKIIDDIKVGIERICPNLAVDGDPDSVGKCYVVIEDRHEAIVYAVN 456

Query: 440 SLVDGDVVVV--KS 451
            L  GD++++  K 
Sbjct: 457 QLRAGDLLLIAGKG 470


>gi|56419650|ref|YP_146968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
 gi|81347689|sp|Q5L0Y0|MURE_GEOKA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56379492|dbj|BAD75400.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Geobacillus kaustophilus HTA426]
          Length = 489

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR +A    FF +KG   DGHDF   AV +G
Sbjct: 1   MKLLTLLSHLPGFWVHHGGNPDIVALEMDSRRVASGSLFFCLKGFTVDGHDFAEEAVARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +     S+ +PV  V D   A+  LA A   R   +  +I +TG+ GKTTT
Sbjct: 61  AAAIVAERPL-----SVDVPVVLVSDSRRAMAILADAFYGRPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++        K    IG+ +  +G               +       + E      + 
Sbjct: 116 TSIIEQIARKTGKKTGLIGTVHIKVGDRSYPAANTTPESLILQRTFKQMVDEGVEFVAME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +      +    I ++G  + +D    + +  +      +     S  V   
Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIVTYGMREKSDVMAEQIRMTAGGMAFRLCTPHGSAAVETK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L            ++T   AL+   P  GR +      N         + 
Sbjct: 296 LVGSFNVYNILAAAAACLASGFSLETIAAALADVEPVPGRFETVDEGQNFTIIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++         + L  +    +     V+G     G         L   +++        
Sbjct: 356 DS-------LENALKTVRQLAKRNVYVVIG----CGGDRDPSKRPLMAQVAVRYADVAIF 404

Query: 407 S-----GFHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +   +   +             +    +      +GDVV++  K 
Sbjct: 405 TSDNPRSEDPKQILRDMEAGVSAEIGKHVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461


>gi|213423829|ref|ZP_03356809.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 144

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 8/150 (5%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1   MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GAG ++V+  +      + +P   V D   A  +LA   R++  A ++A+TGS GKT
Sbjct: 58  KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQLAAWVRMQVPARVVALTGSSGKT 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           + KEM    LS    T     ++NN IGVP
Sbjct: 113 SVKEMTAAILSQCGNTLYTASNFNNDIGVP 142


>gi|148654953|ref|YP_001275158.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus sp. RS-1]
 gi|172048072|sp|A5URF5|MURE_ROSS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148567063|gb|ABQ89208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseiflexus sp. RS-1]
          Length = 509

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/491 (15%), Positives = 134/491 (27%), Gaps = 57/491 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H++L+ +   +        + G+  DSR++ P   F A +G H DGH +I  A+++G
Sbjct: 1   MRLHEILKHLCEPAHMPPVNPEIAGVVYDSRAVTPGALFVAYRGFHTDGHAYIPQALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-------------- 110
           A  VV      A  G + +P   V +   AL  LA A        +              
Sbjct: 61  AAAVVYEDP--AWDGRVPVPALRVPNARVALAPLAAAFYGHPGRRMRIVGVTGTDGKTTT 118

Query: 111 --IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGI 164
             +             ++      I +      S  +    P               + +
Sbjct: 119 TFLTSVALEAGGAITGLMGTVDFKIGERMWTNDSRQSTPEAPEVQALLRDMAEAGCSYAV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L             IAV T +   HL     +E+    KA +FE L +     
Sbjct: 179 IEATSHALSARWNRLAGSAFDIAVFTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFNDAA 238

Query: 225 LNYDDSFFELLKAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +      ++ A      +            ++    +AD +    +   +     V  
Sbjct: 239 APFKQRKIAVVNADDPHHRMFLDAAPVSAERLTYAVHAHADVRAEDVRSTRDGLRFRVTT 298

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              + +      G     N L  L +       ++  + AL       GR +R       
Sbjct: 299 PWGAADARLRLTGDFNVWNALAALTVACAEGVPLERCLAALERVPGVRGRMERIEAGQPF 358

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   +  A          +   + P  EG+ IAV G   E           L   +
Sbjct: 359 TVLVDYAHTPGA-------FEKLFRIVRPLTEGQVIAVFGSAGE----RDRAKRPLQGEI 407

Query: 397 SLYNISHVWLSGFHVL--------------ALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +      V ++                   A                         +   
Sbjct: 408 AGRFCDLVIVTDEDPRLEDRAAIIAEIAAGAEAVGKRIGETCLCIPDRALAIRTAFAYAR 467

Query: 443 DGDVVVV--KS 451
            GD+V++  K 
Sbjct: 468 PGDIVLLLGKG 478


>gi|58038639|ref|YP_190603.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
 gi|58001053|gb|AAW59947.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Gluconobacter oxydans 621H]
          Length = 373

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 9/371 (2%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  L   AR R +  ++AITGSVGKTTTK+ML +ALS+I  T+A + SYNNH GVPLTL
Sbjct: 3   ALVDLGRNARARFRGKVVAITGSVGKTTTKDMLKVALSAIGPTHAAVASYNNHWGVPLTL 62

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           AR+P D  F I E+GM+H+GEI  L   VRP +A+ITTI  AHL +   IE IA  K+++
Sbjct: 63  ARLPQDARFCISEIGMNHIGEIAPLAAQVRPDVAIITTIGTAHLGHMGSIEAIAQEKSDL 122

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L   G   +  D +  E  +    A     ++  G S+ A  ++      +E S   
Sbjct: 123 FSALSDKGIAIVPDDAAGQEHFQTALPAGCA--LWRSGFSETAQLRIENLHCSAEGSHFS 180

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + L      V     G H+A+N  + LG V+ L  DV  A  AL  F P  GR    +  
Sbjct: 181 LHLPSGIQNVTLTAPGEHLARNAALALGAVAALGEDVAVAATALQNFVPGAGR---GQMR 237

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  L+DESYNA+  S++AA++ L+ +        IA LGD+ E+G  + + H  LA
Sbjct: 238 TILNDVRLLDESYNASTPSVRAALATLALLPAQR---HIAALGDIRELGTFADAEHRSLA 294

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + +        +  G H+ AL DALP  +   Y+     L   +  +L  GD+++VK S 
Sbjct: 295 DAVQNAKA-IAFCCGPHMRALYDALPSELQGGYAADAASLAPLLLKALRPGDLLLVKGSF 353

Query: 454 SCGFYRLINLL 464
                 +I++L
Sbjct: 354 GSRMRDVISVL 364


>gi|163738709|ref|ZP_02146123.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
 gi|161388037|gb|EDQ12392.1| UDP-N-acetylmuramyl-tripeptide synthetase [Phaeobacter
           gallaeciensis BS107]
          Length = 494

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 141/459 (30%), Gaps = 34/459 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        + GI++DSR +     F A+ G    G  F   A+  GA  ++ +    
Sbjct: 13  GLTARGGVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +   +   ++ +  V+D   AL   A         T++A+TG+ GKT+    +     
Sbjct: 73  QIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPETMVAVTGTNGKTSVASFVRQIWV 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-------------VDFGIFELGMSHLGEIRFL 178
            +      +G+          L     +                    +  S  G  +  
Sbjct: 133 ELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLEQRR 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      E   +AKA +F  +     + +   D         
Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVINMDDPRGEQMRA 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A     + S G+    D  L   +  +    M      K  +   + IG   A+N+L+
Sbjct: 253 VAAARGHEVISVGR-GLGDLSLVGARYDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D       L       GR +      N      +D ++  +  +      
Sbjct: 312 ACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGA-TVFVDYAHTPDAVAT----- 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            +  + PH  GR +A++G     G    +    L    +  N   V ++           
Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQNNADLVIVTDDNPRSEDPAV 421

Query: 414 LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ A+                 L    +L  GD +++  
Sbjct: 422 IRAAVKGGAPDAMEVGDRAEAILRGVDALGAGDALLICG 460


>gi|261325500|ref|ZP_05964697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294852762|ref|ZP_06793435.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
 gi|261301480|gb|EEY04977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella neotomae 5K33]
 gi|294821351|gb|EFG38350.1| hypothetical protein BAZG_01694 [Brucella sp. NVSL 07-0026]
          Length = 490

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 77/473 (16%), Positives = 144/473 (30%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+       +   +   E+    V+++         
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  Q     +     +   V  A    ++   K   G+       +       +  
Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|260881848|ref|ZP_05405356.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
 gi|260847821|gb|EEX67828.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Mitsuokella multacida DSM 20544]
          Length = 512

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 147/480 (30%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L   +    +       + GI  DSR +     F  I G H DGH FI  AV  
Sbjct: 14  MKTIGQLADLLTDAVVIGNRDTVITGIEHDSRKVQKGTLFVCIPGVHVDGHKFIPQAVAA 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V   + V       I V  V ++  AL+ +          K  ++ ITG+ GKTT
Sbjct: 74  GASAIVTTREDVE--VPEGIAVLRVKELQPALDTIVPYFHDYPARKMRVVGITGTNGKTT 131

Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
           T  +    L            I        +P+               M  D       +
Sbjct: 132 TSYITRAILRKAGYKVGLIGTIQIMIEDEVLPIHNTTPDVVELQHTLAMMRDKGMDYVVM 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LN 226
            +S     +     +    AV T +   HL     ++    AKA++F+ + +TG      
Sbjct: 192 EVSSHALDQNRVAGIEFDTAVFTNLTQDHLDYHKTLKNYMLAKAKLFDHVSETGCKQGKT 251

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVH 285
              +  + + A   A       ++   K AD +       +  +   +  +    M +  
Sbjct: 252 AVVNIDDAVGATMLAHAKCKHLTYAIEKEADLRATDILVHANGAEFVLHHESFGEMPLKL 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G     N++  +G       D     + L  F    GR +  +   +         +
Sbjct: 312 HITGIFNVYNVMSAVGAALAEHIDAAVIKETLEAFTAVPGRFELVKAGQDFSIIVDYAHT 371

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          +VL       + R IAV G     G         +   L+      V 
Sbjct: 372 PDG-------VENVLKTARKIAKKRIIAVFG----CGGDRDRTKRPIMGRLAAELADVVI 420

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +            +++ +  +I   + E                   D+VV+  K 
Sbjct: 421 ATSDNPRTEDPEFILSQVEEGVDEAIGTKHHELIVDRRHAIYRAIEMAEKDDIVVILGKG 480


>gi|261222578|ref|ZP_05936859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261315611|ref|ZP_05954808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|261318049|ref|ZP_05957246.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|265989080|ref|ZP_06101637.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
 gi|265998543|ref|ZP_06111100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|260921162|gb|EEX87815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti B1/94]
 gi|261297272|gb|EEY00769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis B2/94]
 gi|261304637|gb|EEY08134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M163/99/10]
 gi|262553167|gb|EEZ09001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella ceti M490/95/1]
 gi|264661277|gb|EEZ31538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella pinnipedialis M292/94/1]
          Length = 490

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 144/473 (30%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+       +   +   E+    V+++         
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIE 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  Q     +     +   V  A    ++   K   G+       +       +  
Sbjct: 293 LPLAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 353 HKPEA----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|229827430|ref|ZP_04453499.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
 gi|229788368|gb|EEP24482.1| hypothetical protein GCWU000182_02819 [Abiotrophia defectiva ATCC
           49176]
          Length = 506

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 158/476 (33%), Gaps = 44/476 (9%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +LL  I+   I     +  +  IS DSR+I    AF  I+G   DGH F+  A + GA
Sbjct: 17  AGELLSYIKVKKICGDIEKIDIKYISEDSRNIKEGTAFICIEGSRVDGHLFVEGAKKNGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123
           GL + + D+    G   IPV  V D L  +  L+     +    +  + ITG+ GKTTT 
Sbjct: 77  GLFIASKDIADKAG--DIPVVYVKDTLKVMALLSNVLYGKPDEKLFMVGITGTNGKTTTS 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFEL 167
            ++     ++      IG+ ++ IG  +                         D  + E+
Sbjct: 135 YLINHIFETMNLKTGLIGTIHHKIGKKIIPTKNTTPVSATLQGLLEEMAAEKCDACVMEV 194

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFL 225
             SH   +  +        AV T ++  HL     +   A  K       G         
Sbjct: 195 -SSHALALDRVIGC-DFDCAVFTNLSHEHLDLHKTMGNYAHTKELLFTQLGHNLKNGKLK 252

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
               +  +    +  A     + ++G      DF   K      +   ++   G   +V 
Sbjct: 253 TAVLNIDDKYSEEYKAHTPAEVITYGIDDKTADFYADKIFFDDWKMRFDLHFLGDVYKVE 312

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G     N+L  +         V  AI+AL  F    GR +      N         
Sbjct: 313 TNLVGLFNVYNVLAAICTAFAKGIAVRDAIEALKSFSGVSGRMETVHTDKNYKIIIDFAH 372

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +         + VL  ++     R I ++G     G    S   DL  +    +   V
Sbjct: 373 TPDG-------LMKVLETLNKVPHNRIITLIGHSG--GNRDSSMRPDLGRIALENSDEVV 423

Query: 405 WLSG----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +       V  + + L       +    E       +      + D+V++  K 
Sbjct: 424 FTADNPRNESVEHIVEGLVSDCAKTNYTVIEDRKEAIEYAFGIAGENDIVLLAGKG 479


>gi|256841650|ref|ZP_05547156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
 gi|256736544|gb|EEU49872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Parabacteroides sp. D13]
          Length = 486

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            +V         G  S     V D   AL  L             ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    +      V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|163843692|ref|YP_001628096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella suis ATCC 23445]
 gi|254694120|ref|ZP_05155948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 3 str. Tulya]
 gi|256061493|ref|ZP_05451637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella neotomae 5K33]
 gi|256369852|ref|YP_003107363.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
 gi|163674415|gb|ABY38526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella suis ATCC
           23445]
 gi|256000015|gb|ACU48414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella microti CCM 4915]
          Length = 488

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|254440751|ref|ZP_05054244.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
 gi|198250829|gb|EDY75144.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily
           [Octadecabacter antarcticus 307]
          Length = 503

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/473 (18%), Positives = 153/473 (32%), Gaps = 44/473 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+     G   +  + G+S+DSR +     FFA+ G    G DFI +A++ GA  ++ 
Sbjct: 12  LAALGLRGQGGR-EATITGLSVDSRDVKVGTLFFALPGTKVHGGDFIQYALRMGATAILT 70

Query: 71  NTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +          +   +  +   +D  GAL   A         T+IA+TG+ GKT+     
Sbjct: 71  DAQGAQIAANELAESTAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130

Query: 127 TIALSSIK--------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
                 +                T+    +    I +  TLA    +    +  +  S  
Sbjct: 131 RQIWIEMNLAAVNLGTTGVEGAWTHPLKHTTPEPITLHRTLAHAKSNAITHVA-VEASSH 189

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T  +  HL      E    AK  +F  L     + +   D   
Sbjct: 190 GLDQRRLDGVVLSAAGFTNFSHDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDPK 249

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                +          + G+  +A  +L   +  S    +    Q  S       IG   
Sbjct: 250 GPEVVQIAQNRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRASHSARLKLIGGFQ 309

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+L+   +V     D +     L       GR +      N G    +D ++  +  +
Sbjct: 310 ADNVLLATALVIAAGGDPEEVFDTLPYLTTVRGRMQHAATRRN-GGSVFVDYAHTPDAVA 368

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  G+ IA++G     G    +    L    +  N   V+++     
Sbjct: 369 T-----ALMAMRPHVMGKLIAIVGA----GGDRDTGKRPLMGQAAAQNADMVFVTDDNPR 419

Query: 409 -FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++ A+            V          L    +L  GD +++  K 
Sbjct: 420 SEDPATIRAAVMVGALENAAGKSVIEVGDRAEAILRGVDALGPGDALLIAGKG 472


>gi|149201997|ref|ZP_01878971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
 gi|149145045|gb|EDM33074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. TM1035]
          Length = 493

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 168/474 (35%), Gaps = 38/474 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T   L     G +     Q  + G+++DSR + P   F A+ G    G +FI +A
Sbjct: 1   MGQIKTLAAL-----GLTAQAGRQANITGLAVDSREVKPGFLFAALPGTTVHGAEFIQYA 55

Query: 61  VQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +++GAG ++ +          +      +   +D    L   A         T+IA+TG+
Sbjct: 56  LRQGAGAILTDATGARLAQDFLSLSDAALVVAEDPRQTLAFAAALWFGAQPETMIAVTGT 115

Query: 117 VGKTTTKEMLTIALSS------IKKTYACIGSYNNHIGV----PLTLARMPVDVDFGIF- 165
            GKT+                    T    G+Y+  +G     P+TL RM    +     
Sbjct: 116 NGKTSVATFTRQIWERMGLAAVNLGTTGVEGAYSAPLGHTTPEPITLHRMLAKCEVAGVT 175

Query: 166 --ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S  G  +     V    A  T     HL   +  +E  +AKA +F  +     +
Sbjct: 176 HGAMEASSHGLAQRRLDGVHLMAAGFTNFTQDHLDYHASFDEYFAAKAGLFARVLPEDGV 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D       A       + + + G++  AD +L   +  +    +  + + +  ++
Sbjct: 236 AVINIDDPRGAEMAAIATERGQDLITVGRAPGADLRLIAQRFDATGQVLRFEWEDEVNQL 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A+N+L+  G+V    AD +   + L       GR +      N      +D
Sbjct: 296 RLDLIGGFQAENVLLAAGLVIGAGADAEQVFEVLPDMRTVRGRMQLAATRDNGA-AVFVD 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +  +       +  + PH  GR IA++G     G         L    +  +   
Sbjct: 355 YAHTPDAVAT-----AIKALRPHVMGRLIAIVGA----GGDRDRAKRPLMGQAAAAHADR 405

Query: 404 VWLSG-----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           V ++       +  +++ A+ +               L    +L  GD +++  
Sbjct: 406 VIVTDDNPRSENPASIRAAVMQGCPKATDVGDRAEAILRGVDALGPGDALLICG 459


>gi|157828768|ref|YP_001495010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165933496|ref|YP_001650284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
 gi|34222686|sp|Q9AKI7|MURE_RICRI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235394|emb|CAC33671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia rickettsii]
 gi|157801249|gb|ABV76502.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165908583|gb|ABY72879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia rickettsii str. Iowa]
          Length = 479

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 70  YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129

Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                     VP            +        +++ +FE   S  G  +     ++ +I
Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNVK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   + +          +   +      +        IG   A N+L+ +  +  +
Sbjct: 248 FITVGTKGDLEITRLNCSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            + +   V G     G         L   ++      + ++  +            +   
Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++ +   +   +    +  ++L   D+++V  K 
Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448


>gi|254708108|ref|ZP_05169936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M163/99/10]
 gi|254710477|ref|ZP_05172288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis B2/94]
 gi|256031971|ref|ZP_05445585.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella pinnipedialis M292/94/1]
 gi|256160170|ref|ZP_05457864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti M490/95/1]
 gi|256255376|ref|ZP_05460912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ceti B1/94]
          Length = 488

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|317489849|ref|ZP_07948343.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911047|gb|EFV32662.1| Mur ligase middle domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 269

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/248 (27%), Positives = 107/248 (43%), Gaps = 6/248 (2%)

Query: 8   HDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +     G  +     P+    G++ DSR   P + + A+ G   DGHDF+  A+  GA
Sbjct: 6   KQIAACTGGSFVVEPLDPRALATGLTWDSRDAKPGDVYVALPGERVDGHDFVGAALSGGA 65

Query: 66  GLVVVNTDMVASI----GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              +V   +  ++      L   V  V D   A+  +A   R      +IA+TGS GKTT
Sbjct: 66  VCALVMQPLDEAVRMLAAELGASVIEVPDTAHAVADIAREWRSHLHGRVIALTGSTGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           TK ++   L+S   T A  G+ NN +GVP TL     D    + E+GM   G++  L   
Sbjct: 126 TKNLVRDVLASTLSTVATAGNQNNELGVPKTLLAAEQDTQAVVVEMGMRGAGQLADLCDY 185

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VRP   ++  +  +H+      E IA AKAE+   L +         D  +     +   
Sbjct: 186 VRPDWGLVVNVGESHIELLGSRENIARAKAELLCALPEGTGRAFVNADDDYADFVREHAR 245

Query: 242 LGIKTIYS 249
           L  + + +
Sbjct: 246 LDARRVET 253


>gi|148559436|ref|YP_001259329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
 gi|148370693|gb|ABQ60672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella ovis ATCC 25840]
          Length = 499

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 10  MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 67  VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|150397288|ref|YP_001327755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sinorhizobium medicae WSM419]
 gi|150028803|gb|ABR60920.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sinorhizobium medicae
           WSM419]
          Length = 486

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 145/460 (31%), Gaps = 36/460 (7%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +     G      + GI+ DSR + P + F A+ G   DG  +I  A+ +GA  VV    
Sbjct: 14  LSAQLKGDAANIEIGGITADSRQVRPGDLFVAVAGAKADGSAYITDALSRGASAVVA--- 70

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
             ++     I VF + +    L K + +   R   T++A+TG+ GKT+         +  
Sbjct: 71  GTSARAEAGINVFTISEPRRFLAKASSSFFGRQPETMVAVTGTAGKTSVASFTRQIWAHS 130

Query: 134 KKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLT 179
             + A I              +     P++L ++  +  D G+    +  S  G  +   
Sbjct: 131 GFSAAMIGTTGVVSPGRAEYGSLTTPDPVSLHKLLAELADEGVTHAAMEASSHGLDQQRL 190

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V    A  T +   H+     +E   ++K  +F  L   G+  + + D  +      +
Sbjct: 191 DGVNLAAAAFTNLGRDHMDYHPTVEHYMASKMRLFAALLPKGSPAVIFADDQWSADAIAA 250

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + + G++ +     R      +QS             V           +   
Sbjct: 251 ARKAGHDVRTVGRNGDFIALKRVEHFRHKQSAEVHVGDDIYEIHV----PLAGDFQVANA 306

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +   +A  A S     +G   R           L    Y   P ++   +  
Sbjct: 307 LVAAGLAMSTGISAKAAFSALERLQGASGRLELVGQTKDGALAYVDYAHKPDALSNVLES 366

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
              + P   GR + V G     G         +   ++      V ++  +  +      
Sbjct: 367 ---LRPFTTGRVVVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPEVI 419

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 420 RAEIMAAAKGATEIGDRAEAIRVAVGMLKTGDTLIVAGKG 459


>gi|206900924|ref|YP_002250976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
 gi|206740027|gb|ACI19085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dictyoglomus thermophilum H-6-12]
          Length = 491

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 166/479 (34%), Gaps = 51/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +    ++++ I+ H I         + GI+ DSR +     FFA+ G   DG ++I  A+
Sbjct: 1   MKKLKEIVEYIKDHVIEVIGDVDLNITGIATDSRKVRKGNIFFALPGTKDDGKNYISDAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            KGA  V +            +P+  V ++L  L+K++            II +TG+ GK
Sbjct: 61  SKGASAVFLE---GEVNNIYGVPLVRVREILDVLSKVSSYFYDFPSKYLNIIGVTGTNGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIF 165
           TTT  +L     S       IG+                P         R  VD +    
Sbjct: 118 TTTTNLLYHYWKSKGIRSGLIGTIEYKIDDESYPSNFTTPQPQDLQEILRKMVDREVKFL 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S           +    AV T +   HL     +EE   AK +IF  LE  G   +
Sbjct: 178 AMEISSHALALKRVDGISLKGAVFTNLTQDHLDFHKTMEEYFQAKLKIFNYLEDGGFAVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D+ +   +              +   KN D  L+K +  +    +E+      + +  
Sbjct: 238 NRDNEWTGRI------SLPNRRVFWVSLKNGDLYLKKHENTNNGMLLEIGTPLGDLIIDT 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+L  +G++  L   ++   K LS F   +GR +  R   N         +
Sbjct: 292 KLKGKFNIYNILFAVGVLIGLGEPLEDISKFLSTFKGVKGRLELIREGQNFDVIVDYAHT 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          +VL  +    +GR I V G     G        D    +S      V 
Sbjct: 352 PDG-------LFNVLQTVKEFTKGRVIVVFG----CGGDRDPTKRDKMGEISARLADIVI 400

Query: 406 LSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         +  +++ + R     Y   E  +           +GD V++  K 
Sbjct: 401 VTSDNPRTEDPLKIIRQIEEGIRRVGRSDYFVIENREEAIKKAIEIAGEGDSVLIAGKG 459


>gi|265984473|ref|ZP_06097208.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
 gi|264663065|gb|EEZ33326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella sp. 83/13]
          Length = 490

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+      +      +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|281424947|ref|ZP_06255860.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
 gi|281400791|gb|EFB31622.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris F0302]
          Length = 483

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 152/477 (31%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              ++LL+       IG      + G++IDSR I     F A+KG   DGH FI  A++ 
Sbjct: 1   MKLNELLKNITPIKIIGND-DVEITGVNIDSRRIKAGHLFVAMKGTQVDGHQFIGKAIEL 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+     +  +    I    V+    A+ K+A         K  ++ +TG+ GKTT
Sbjct: 60  GAISVLCED--LPEVLQEGITYVQVESTEDAVGKVATLFYGNPSHKLKLVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
              +L              + + +Y + + VP                  V+       +
Sbjct: 118 IATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     ++   A+ T +   HL      E   +AK   F+GL K      N 
Sbjct: 178 ECSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLPKDAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T+ ++     ADF+ R  +   E  ++E+  +   ++ +   
Sbjct: 238 DDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEIDGREVGVQFIGKF 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              ++       + +      DV   +  L   + +               +    ++  
Sbjct: 294 NVSNLLAVYGAAIMLGK-KPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++   +         G+G  I V G     G         L    ++     V ++
Sbjct: 353 NVLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIIT 400

Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L       V                   GDVV+V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|238650719|ref|YP_002916572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
 gi|238624817|gb|ACR47523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia peacockii str. Rustic]
          Length = 479

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 145/455 (31%), Gaps = 50/455 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--------------SS 132
            V DV  AL +       +    +IA+TG+ GK++    +                    
Sbjct: 70  YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129

Query: 133 IKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           I      I        +     R          +++ +FE   S  G  +     ++ +I
Sbjct: 130 IFGCVNFINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   + +          +   +      +        IG   A N+L+ +  +  +
Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
            + +   V G     G         L   ++      + ++           ++ A+   
Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAAIISG 413

Query: 422 IH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           I           +    +  ++L   D+++V  K 
Sbjct: 414 IEKADYTEIANREEAIKYGINNLKQDDILLVAGKG 448


>gi|262383990|ref|ZP_06077126.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
 gi|262294888|gb|EEY82820.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_33B]
          Length = 486

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 147/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            +V         G  S     V D   AL  L             ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    +      V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAAKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|310642992|ref|YP_003947750.1| udp-n-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
 gi|309247942|gb|ADO57509.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus polymyxa
           SC2]
          Length = 495

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/482 (15%), Positives = 143/482 (29%), Gaps = 55/482 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +    +         GI  DSR + P + F  + G   DGHD+   AV  GA 
Sbjct: 3   LQQLASLLAVSRVMGDGTVDCRGIGADSRRVQPGDLFLCLPGFTVDGHDYAGQAVASGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            +VV  ++      + +P   V D   A+  LA            +I ITG+ GKTT   
Sbjct: 63  ALVVEREL-----DVPVPQLVVKDARHAMAVLADYMFDSPSRRMRMIGITGTNGKTTITY 117

Query: 125 MLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMP--------VDVDFGIFELG 168
           ++   +         IG+             G       +           V   + E+ 
Sbjct: 118 LIEKIMQDAGVNTGLIGTIQMRYNGQSYPMSGTTPEAVELQRYLGNMAEQGVQCCVMEV- 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA----KAEIFEGLEKTGTIF 224
            SH  E   +        A+ T +   HL   + +EE  +A     + +     +  +  
Sbjct: 177 SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHNTMEEYRAAKGLLFSRLGNAFSRDASNS 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   +   A     + ++G  K++D Q  +    ++ +   V       ++ 
Sbjct: 236 KYAVLNADDPASSYLQAQTAAQVITYGVEKDSDVQASRITISAKGTSFHVSTFKGETDIE 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +    +    +    ++L      +GR +                
Sbjct: 296 LRMVGKFNVYNALAAISAALLEGISLVDIKRSLESIAGVDGRVEPVDAGQPFAVIVDYAH 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +          +VL  +     G+   V G     G         L   ++     H 
Sbjct: 356 TPDG-------LENVLRTVKEFATGKVWCVFG----CGGDRDRTKRPLMGKIAARYSDHS 404

Query: 405 WLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV-- 449
           +++  +            ++  L    +     E                   DVV++  
Sbjct: 405 FITSDNPRTEDPIVILKDIEQGLIDEGVPAERYELIVDRRTAIHKAVEMASPDDVVLIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|222086449|ref|YP_002544983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
 gi|221723897|gb|ACM27053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Agrobacterium
           radiobacter K84]
          Length = 487

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 145/473 (30%), Gaps = 41/473 (8%)

Query: 5   WTFHDLLQAI----QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               D+         G   G +    + G+S DSR +AP  AF A+ G   DG  FI  A
Sbjct: 1   MNLRDIAGNTFPELNGQVGGALGDLEITGLSADSRKVAPGMAFVAVAGTKADGASFIADA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA +V+              P+  VD+    L   A     +   T++A+TG+ GKT
Sbjct: 61  VSRGASVVIA----GNGAAVTGAPLLTVDEPRRFLAVAASRFYGKQPETMVAVTGTAGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD------------VDFGIFE-- 166
           +         +      A IG+             +                D G+    
Sbjct: 117 SVASFTRQIWAYAGHPAAMIGTTGVVSPTRNDYGSLTTPDPVSLHQLLAALADEGVTHAA 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +F    VR   A  T +   H+     +E+  +AK  +F  L   G+  + 
Sbjct: 177 MEASSHGLDQFRLDGVRLAAAAFTNLGRDHMDYHPTVEDYMAAKMRLFRDLLPKGSPAVI 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  +      +     + I + G+  +     R      +Q              +  
Sbjct: 237 FADDPWSEQAIAAARDTGQDIRTVGRKGDFLALKRVEHFRHKQIAEVHIGDDIFEIHI-- 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                    +   L    +  +    A  A++      G   R     +     L    Y
Sbjct: 295 --PLAGDFQVANALVAAGLAISTGVAAPVAMAALEKLVGAAGRLELVGHTHDGALAYVDY 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++    +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 353 AHKPDAL---ENVLTSVRPFTTGRIIVVFG----CGGDRDRGKRPIMGEIACRLADVVIV 405

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S L  GD ++V  K 
Sbjct: 406 TDDNPRSEEPAAIRAEIMAAASCATEIADRAEAIREAVSMLTSGDTLIVAGKG 458


>gi|261214420|ref|ZP_05928701.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|260916027|gb|EEX82888.1| meso-A2pm-adding enzyme [Brucella abortus bv. 3 str. Tulya]
          Length = 490

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 3   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 62  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 120 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 180 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 240 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 297 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 357 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 409 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|254719467|ref|ZP_05181278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. 83/13]
 gi|306839246|ref|ZP_07472063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
 gi|306405793|gb|EFM62055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. NF 2653]
          Length = 488

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 144/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+      +      +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPMRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|187251914|ref|YP_001876396.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
 gi|186972074|gb|ACC99059.1| UDP-N-acetylmuramyl tripeptide synthase [Elusimicrobium minutum
           Pei191]
          Length = 479

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 85/465 (18%), Positives = 146/465 (31%), Gaps = 57/465 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
                +  V  I+ +S+ + P + FFAIKG   DG+DFI  AV KGA  VV         
Sbjct: 7   FNTDSEVEVGEITQNSKLVVPGDIFFAIKGAKVDGNDFIDDAVSKGAVAVVSTEPAKKKY 66

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +P F VDD+  A+ K AV            I ITG+ GKT+   +L    +     
Sbjct: 67  P---VPYFQVDDIDLAMAKAAVKFYKNPSDDMFFIGITGTKGKTSISYLLESIFNEAGIP 123

Query: 137 YACIGSYNNHIGVP---------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            + IG+ N  I                    +          +  + +S           
Sbjct: 124 CSVIGTINYRINGEVFAKAPNTTPAALYLYYMIDKMRSAGTKVVIMEVSSHALELKRVFG 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +   +A+ T +   H+      E            + E  +   T  +N DD +   L  
Sbjct: 184 LNFDVALFTNLQRDHMDFHKNFENYFAAKEKLFDSLIENSKPAKTAIVNIDDQYGLRLAD 243

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           K  A       S  +++N    L       +                 + +G H   N +
Sbjct: 244 KIKAKTTLIPVSLVEAENVKESLNGVTFSYKG-----------ESASINLLGKHNLYNAV 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +        D+ TA+K ++      GR +R         F     +  +        +
Sbjct: 293 FAVKAAMAYGVDLQTALKGIAKLQGIPGRMQRVNKGQPFYVFVDFAYTTES-------LM 345

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
                + P+  G  I V G     G         L  + +  N SHV L+  +       
Sbjct: 346 KAYETLEPYKNGNIITVFG----CGGDRDRTKRPLMGLAACQNSSHVLLTNDNPRTEDQQ 401

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + + +    +    +          S   + D++++  K 
Sbjct: 402 QIFNDILNGMKGYTNYEIVQDRALAIKTGISLCKENDILLIAGKG 446


>gi|114570633|ref|YP_757313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
 gi|114341095|gb|ABI66375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maricaulis maris MCS10]
          Length = 483

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 154/469 (32%), Gaps = 40/469 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +DLL  +    +    +  V G+++DSR + P   F A+ G    G DFI  A+  G
Sbjct: 1   MTLNDLL--LDEGLVVEGGEQTVRGLTLDSRKVEPGFVFAALPGVKVHGRDFIPKALTAG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +++ +  + A      +PV  V +    L ++A     R    I+AITG+ GK++T E
Sbjct: 59  ASVILTDEPVEAP-----VPVIAVPEPAALLARMAARFYPRQPGHIVAITGTNGKSSTVE 113

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMS 170
            L    +      AC+G+     G  + +          +                +  S
Sbjct: 114 FLRQIWAGAGIEAACLGTLGVTRGNSVEVTGYTTPDAVALQAALDRLAGEGVTHLGMEAS 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR  +   T +   HL       +  ++K ++F          +   DS
Sbjct: 174 SHGLKQHRMDGVRLQVGAFTNLTQDHLDYHPDFADYFASKLKLFTERLPADGRAVINVDS 233

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +    A S       + + G  + +D  +R+    +    +    +G+   +    +G 
Sbjct: 234 EWGGKMAASARERGLEVLTMG-WRGSDLAIREITPRAASQSVIFAWKGREHALDIPLVGE 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L    I         + +  L       GR               +   Y   P
Sbjct: 293 FQILNALGAAAIALSDGVAEASVLDTLKGLAGVPGR---LEKVGETAAGAPVLVDYAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
             +   +       PH  GR I + G     G    +       V++     HV ++   
Sbjct: 350 DGLDKLLRAA---RPHTRGRVIVIFG----CGGDRDASKRAKMGVIAANQADHVIVTDDN 402

Query: 409 ---FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A++ A+ +                   + L  GD +++  K 
Sbjct: 403 PRSEDPAAIRKAVLKGCPRAEEIADRAQAIRHGVAMLKAGDCLLIAGKG 451


>gi|282889754|ref|ZP_06298293.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500328|gb|EFB42608.1| hypothetical protein pah_c004o123 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 493

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 149/475 (31%), Gaps = 42/475 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I    +    +  ++GI  +S+ IAP   F A KG  +DG  +I  A+  G
Sbjct: 1   MKLKKVLKDIPVVQVKGSKEIEISGICANSQLIAPGNLFIAKKGLKFDGTSYIPEAINHG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +V +   +       I      +V     + +            I+ ITG+ GKTTT
Sbjct: 61  ATAIVTD---IYDPSFKEITQIICKNVAEVEGRFSANFYQMPSQELFIVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIR---- 176
             ++   L  +      IG+    +G     A            +   M H G       
Sbjct: 118 SFLVKYLLEQLNLPCGLIGTIEYILGRYRYKASHTTPDVHSNHHMLREMVHQGCQAAVME 177

Query: 177 --------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        +   IA+ T +   HL     +E  A+AK ++F  L++  +      
Sbjct: 178 VTSHALDQKRVEHIDYDIAIYTNLTQDHLDYHQNMECYAAAKRKLFLQLDQVPSKKSKQI 237

Query: 229 DSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +  +              I++FG    AD +          + +++  QG+S       
Sbjct: 238 IANLDCPWFETILKGIKTPIFTFGIDSPADLRACPTSFGPTGTHIDLHYQGRSYSTFFPL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N L  + +       ++  I     F P  GR +  +  L+   F     + +
Sbjct: 298 IGRFNIYNCLAAIAVGLTRKITLEKLISLAQQFPPPPGRLEPIQNDLDLNLFVDFAHTED 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A   +++    +        +G+ I V G     G              S        ++
Sbjct: 358 ALYKALECLSEL-------KKGKIITVFG----CGGDRDKTKRPKMAQASASFSDLTIVT 406

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            + +      +            F       GD+++V  K 
Sbjct: 407 SDNPRSEDPLKIIQEIAEGFSLQDNYIVQPDRFSAIAFAIEKANPGDIILVAGKG 461


>gi|260584181|ref|ZP_05851929.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
 gi|260158807|gb|EEW93875.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Granulicatella elegans ATCC 700633]
          Length = 495

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/480 (18%), Positives = 158/480 (32%), Gaps = 52/480 (10%)

Query: 7   FHDL--LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              L  L+ I+G+  G      ++ ++ DSR + P   FF I G   DGH F   A +KG
Sbjct: 6   LAQLIYLKKIEGNLSG----VTIDFLAQDSRKVRPNTLFFCIDGVTVDGHRFAAAAKEKG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   V +  +   +G    PV  V DV   +  LA            +I +TG+ GKTT 
Sbjct: 62  AVAFVASKSIKNQVGDT--PVIYVKDVTRVMALLANHFYGYPTQSLQMIGVTGTNGKTTV 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------L 167
             M+   L    K  A IG+    IG P  +       +                    +
Sbjct: 120 THMIDALLEKPNKPTALIGTIYRKIG-PKIIQTHNTTPEILTLHETFQELKEIGGETCLM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224
            +S           +     V T +   HL     +E+ A AK              +  
Sbjct: 179 EVSSHALQLGRVWGLDYDCVVFTNLTHEHLDLHKTMEQYAHAKSLLFSQLGNYVGENSKP 238

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEV 283
                +  +             + S+G ++ ADF+    +  +  +  E V    +   V
Sbjct: 239 KVAVLNADDEQFQMFEYSTPVQVISYGINEEADFKAENIRTENGHTIFELVIQNDERYLV 298

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     NML  + +  +    ++  +K +  F    GR +      +        
Sbjct: 299 DMPLLGIFNVYNMLSAIAVAYVYGISIEEILKKVKAFQGVAGRMQSVDKGQDFQVIVDFA 358

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +          +VL  ++    G+ I V+G     G    S   +L   ++L    H
Sbjct: 359 HTPDG-------LENVLDSLAQIPHGKIITVVGHSG--GNRDSSMRPELGR-IALTKSDH 408

Query: 404 VWLSGFHVL-----ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V  +  +        + + L      +S+     +  +            GD+V++  K 
Sbjct: 409 VVFTADNPRTEPLVNIYEGLLSAVNKKSVSYECIDKREEAIEKALQLASAGDIVLLAGKG 468


>gi|15892835|ref|NP_360549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
 gi|21362706|sp|Q92H59|MURE_RICCN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15620020|gb|AAL03450.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia conorii str. Malish 7]
          Length = 479

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDIFFAIKGQNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 70  YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129

Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                     VP            +        +++ +FE   S  G  +     ++ +I
Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   + +          +   +      +        IG   A N+L+ +  +  +
Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            + +   V G     G         L   ++      + ++  +            +   
Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++ +   +   +    +  ++L   D+++V  K 
Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448


>gi|288929759|ref|ZP_06423602.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328860|gb|EFC67448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 481

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 157/476 (32%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +L+ ++  ++    +  V  + IDSR + P   F AIKG   DGH FI  AV +G
Sbjct: 1   MTLSSILKNVKPLNVVGNAEVQVTAVDIDSRKVGPGHLFVAIKGTQVDGHAFISKAVAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+  T  + +     +    V+    A+  +A         K  ++ +TG+ GKTT 
Sbjct: 61  AVAVLCET--MPAELPQGVTFVQVESTEDAVGPVATLFYGEPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y     +P                  V+       + 
Sbjct: 119 ATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     V + +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF+ +  +   E     + L+    EV    I
Sbjct: 239 DKNGMVMVQNTRA----TVKTYSTRSMADFKAKILECHFEG----MYLEINGAEVGVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L    +  +  +S  H   GR +  R             + +A
Sbjct: 291 GKFNVSNLLAVYGTAVMLGKRPEDILLVMSTLHSVNGRLEPLRSPEGYTVIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G+ I V G     G         L  V ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGKVITVCGA----GGNRDKGKRPLMAVEAVKQSDRVIITS 401

Query: 409 -----FHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ +         +   V                   GDVV+V  K 
Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVVSIVDRREAIRTACMMAQKGDVVLVAGKG 457


>gi|23098921|ref|NP_692387.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oceanobacillus iheyensis HTE831]
 gi|30316004|sp|Q8CZE6|MURE1_OCEIH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase 1;
           AltName: Full=UDP-N-acetylmuramyl-tripeptide synthetase
           1
 gi|22777149|dbj|BAC13422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           (EC 6.3.2.13) [Oceanobacillus iheyensis HTE831]
          Length = 493

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/464 (17%), Positives = 141/464 (30%), Gaps = 48/464 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G V    +  + +DSR I    AF  I G   DGHD++  AV+ GA  +  +  ++   G
Sbjct: 17  GEVENCEITSLEMDSRKITSGSAFVCITGFTVDGHDYVDQAVKNGASAIFTSKPLMKEYG 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V+D   AL  LAV           +I +TG+ GKTT   +L       +K  
Sbjct: 77  ---VPIIQVEDTNRALAMLAVKYYDYPTKHFPLIGVTGTNGKTTVTYLLDKIFEYHQKKA 133

Query: 138 ACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+    IG                          DV  GI E+    L   R     
Sbjct: 134 GVIGTIQVKIGEETFPIVNTTPNALELQKTFHVMREKDVKQGIMEVSSHALDMGRVYGCD 193

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               IAV T ++  HL     I++   A +      G             +  +      
Sbjct: 194 YD--IAVFTNLSQDHLDYHQDIQDYLRAKSLLFAQLGNGYDSEKEKYAIINDDDSSSHLL 251

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + ++   K A    +  +  +     ++     ++ +    +G     NML  
Sbjct: 252 KRSTAQHVITYSCKKEATIMAKDIELTASGIRFKLHSPLGNITIQSRLMGMFNVYNMLAA 311

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                     ++   +AL       GR +      N         + ++         +V
Sbjct: 312 SAAAIASKVPLNVIQQALESIEGVNGRFEPIVEGQNYSVIVDFAHTPDS-------LENV 364

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
           L  I    +     V+G     G         L   ++L    H   +          A+
Sbjct: 365 LQTIKDFAKRNVYVVVG----CGGDRDRKKRPLMAEVALNYADHAVFTSDNPRTEDPQAI 420

Query: 415 KDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            D +       S                  S    D+V++  K 
Sbjct: 421 LDDMTAELDANSGSYEVVVDRKEGIAKAIQSAQKDDIVLIAGKG 464


>gi|262037677|ref|ZP_06011120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
 gi|261748289|gb|EEY35685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Leptotrichia goodfellowii F0264]
          Length = 490

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 171/475 (36%), Gaps = 46/475 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + + I    +    +  + GI  DSR I     F A+KG   DGH+FI  A+  GA +++
Sbjct: 4   IFENISHTVLHKGKEFKIEGIEYDSRKIKENFVFAAMKGSSVDGHEFIQKAIDNGAKMII 63

Query: 70  VNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125
           V    ++        I    V+DV   L  +A       + K  II ITG+ GKTT+  +
Sbjct: 64  VEENIEVSKYDKYEDISFVFVEDVRKHLGIIASNYYGYPQDKIKIIGITGTNGKTTSSYI 123

Query: 126 LTIALSSIKKTYACIGS-----YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLG 173
           L   L    +            +      P +          +   V++ I E+  SH  
Sbjct: 124 LENILEKTARIGTTGNRILDEEFETVNTTPESLELVKLINESVKRGVEYFIMEV-SSHAL 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  + ++++   A+ T +   HL     +E   +AK +IF  L  +GT  +N DD + +
Sbjct: 183 EIGRV-NMLKFDSAIFTNLTQDHLDFHKTMENYFNAKRKIFSMLRNSGTGTVNIDDGYGK 241

Query: 234 LLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +   K  A  +       K KNAD      +  ++   +++    K      + +G + 
Sbjct: 242 RIIEEKKDAENVCYKTVSIKDKNADLYGEIAEYTNDGMKIKIVHNDKEYFANINLVGEYN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L        L  +++  I+ L       GR +  +   N         + +     
Sbjct: 302 LYNVLGCAASALALGIEIEKIIEKLQKMPSVPGRFETVKNNKNARIVVDYAHTDDG---- 357

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                ++   +    + R I V G     G+        +A+  + ++   + L+  +  
Sbjct: 358 ---LTNIGKTLRKITDNRVITVFGA---GGDRDNKKRPKMAKAAAEFS-DFIILTSDNPR 410

Query: 413 A-------------LKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                         L +           E  +    +    +  +GD +++  K 
Sbjct: 411 TENPANILKEVEAGLIEINFPKDKYTVIEDREQAIKYAVQEMTGEGDSLLIAGKG 465


>gi|293400695|ref|ZP_06644840.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305721|gb|EFE46965.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 487

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 151/459 (32%), Gaps = 40/459 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                P   + G+  DSR I P + +F + G  +DGH F+   V+KGA  +V   D+   
Sbjct: 6   LFENAPDIEIGGLCTDSRKIQPMDMYFCMDGMTFDGHQFVEEVVEKGAVCIVHAKDI--E 63

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +    V++V   LN +A           T+  +TG+ GK+T   ++    S  K 
Sbjct: 64  TMHKGVAYIKVENVNRTLNMVASKFYGHPSHQLTVFGVTGTNGKSTITSIIKDVYSHFKP 123

Query: 136 T-------------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                                     +     +  VD       L +S  G        V
Sbjct: 124 CGYIGTISISYGDVTMPPSLTTPDPILIHHSMKDMVDYGMQAVALEVSSHGLEMGRVQSV 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +AV T +   HL     +E    AK ++F  L+  G   +N DD        +  A 
Sbjct: 184 DFDVAVFTNLTYDHLDFHGTLENYFEAKHKLFLQLKSDGVAVINVDDP----FAKRMVAG 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I S+G + +AD++       +  S  ++   G++  +  + +  +   N+L  +  
Sbjct: 240 CKAHIVSYGVTADADYRGDNIHIGTNGSTFDLIHHGETYTITTNLVAMYNIYNLLGAIAA 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +      +   +  LS     +GR +R                +   P  M+      + 
Sbjct: 300 MCESGVALKEIVPYLSELTQVDGRMERIDEGQAFNVIVD----FAHTPDGMEKVFEFANS 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417
           I+P      IAV G          +    +   ++      + L+       +   + + 
Sbjct: 356 ITPD-GNAIIAVFGSAG----KRDTKKRKVFGEIADRYCDSIILTEDDPRDENPRDIANE 410

Query: 418 LPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   I      + E           S    D V++  K 
Sbjct: 411 IKGGIKDTNNIFIEDRYSAIRQAIESANVNDTVLILGKG 449


>gi|225174291|ref|ZP_03728290.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170076|gb|EEG78871.1| Mur ligase middle domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 465

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 103/459 (22%), Positives = 184/459 (40%), Gaps = 21/459 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFF-AIKGPHYD--GHDFI 57
           M  L    ++L  I G  I    +  +  +   S  +     FF   KG   D   + + 
Sbjct: 1   MKALP-LKEILAVIDGEVIAGSSEFEIIDVKTSSPGLRNGTLFFHTKKGLTIDQNFNRY- 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                K    +V +  +     + ++ +  VD+ + AL       R      ++ ITG+ 
Sbjct: 59  -----KKRVAIVTDKKIDLDQLNDNVTLITVDNSVNALASFTSYYRGLFTIPVVGITGTA 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEML   L   +       S N  +     L  +  D D  +FE+G+S+ G IR 
Sbjct: 114 GKTTTKEMLAHILRGEQNVQCTYKSMNGIVLNLKYLLGINEDTDVAVFEMGVSYPGNIRK 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              + +P I +IT I  AHL     +E    AK E+ E L+  G + LN DD   E +K 
Sbjct: 174 SGAVFKPSIGMITNIGTAHLETCKTLERYIGAKGEMLEALDYKGQLLLNSDD---ENIKK 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                    +Y FG+     +++ + +  +E+   ++ ++G S + V   +     Q + 
Sbjct: 231 IDLHPFKGQVYYFGQKSECAYRISQIEYAAEKMVFQLHVKGHSSKRV--YVPGLGEQCVY 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                ++            +      +   +           T+ID+++N+NP+S  AA+
Sbjct: 289 NAAAAIAAAHLTGMDLSSCIERIGSFKQMERHVSVERGLNRATIIDDTWNSNPSSAYAAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD- 416
            VL +I+ + +   +AV G +  +G      H+ L   +    IS +   G     + D 
Sbjct: 349 KVLQKIAENKKS--VAVFGKLQRLGAKQHEEHVKLGARMKELGISCLITIGKDAQDIGDA 406

Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              A     +V    + + L   + S   +  VV++K S
Sbjct: 407 AIQAGIAQANVFNVLSAEELQEKLLSITDENTVVLLKMS 445


>gi|242315939|ref|ZP_04814955.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
 gi|242139178|gb|EES25580.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 1106b]
          Length = 130

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 5/123 (4%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + T  +    I G ++    +     +S DSRS  P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLTLREAAAMIPGATVLGDERASFERVSTDSRSAGPGDLFVALKGERFDAHDFVGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+          ++P   V D   AL  LA   R+R    ++A+TGS GKT
Sbjct: 60  AARGASAAIVSRSPAEW----NLPALKVADTRAALGALAHGWRMRFSMPLVAVTGSNGKT 115

Query: 121 TTK 123
           T K
Sbjct: 116 TVK 118


>gi|150003967|ref|YP_001298711.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294778002|ref|ZP_06743436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
 gi|166224772|sp|A6L075|MURE_BACV8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149932391|gb|ABR39089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacteroides vulgatus ATCC 8482]
 gi|294448060|gb|EFG16626.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides vulgatus PC510]
          Length = 484

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +      ++    V+D    + KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK   F+GL KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     ++++     +DF+ +  +   E     + L   ++EV    I
Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGAACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V+G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|260494182|ref|ZP_05814313.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
 gi|260198328|gb|EEW95844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_33]
          Length = 485

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 154/453 (33%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKY---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134

Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V                    +   +++ + E+  S          ++    A
Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDDYGKRLYDEFIIDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + + +        +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   +       + L+  +            +K   
Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449


>gi|330444384|ref|YP_004377370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
 gi|328807494|gb|AEB41667.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pecorum E58]
          Length = 483

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 157/473 (33%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQ I     G VP   V   + DSR +   + F A +G  +DG+DF   AV++G
Sbjct: 1   MNLKELLQGISAKIYGKVPTLEVRNFTRDSRCVGVGDIFIACRGEQHDGNDFSADAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++ +         LSI       V     +LA     R   K  +  +TG+ GKTT 
Sbjct: 61  AIAILSS----FYNPFLSIVQIVTSCVEQLEAELAAKFYGRPSEKLEVFGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L    K    IG+  + +G              +        V        + 
Sbjct: 117 TYMIKALLDHSHKPAGLIGTIEHILGEGSIHDSFTTPSACLLQKYFAEMVKNRRKAVAME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +G     T      + ++T +   HL     +E   +AK ++F  L K G   +N D
Sbjct: 177 VSSIGLELNRTAQTSFDVGILTNVTLDHLDFHGTLENYLTAKEKLFSQLPKNGCAVINAD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +     ++  ++      ++G  + A+++    +     +   +  +GKS       I
Sbjct: 237 SPY----ASRFCSIASSRCVTYGIEEAAEYRACDLQLSLLGTRYTLVHRGKSYLCKSPLI 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L  +  V   +      +       P          +     +      Y  
Sbjct: 293 GRYNVYNTLAAIAAVHERSNQELPELLVALENAPLPKGRLEPVFSGPCPIYID----YAH 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++   ++ L ++    +GR I V G     G         L   ++      +  + 
Sbjct: 349 TPDALDNVLATLKELMS-CQGRVIIVFG----CGGDRDRSKRKLMARVAERYGFSIVTTD 403

Query: 409 FHVL--------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        + +      +    +      L   S   D DVV++  K 
Sbjct: 404 NPRKEDPEVIIHEICEGFTSQKYC-VEQDRKKAILRAISMASDKDVVLIAGKG 455


>gi|313206535|ref|YP_004045712.1| udp-n-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|312445851|gb|ADQ82206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer DSM 15868]
 gi|315023524|gb|EFT36528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Riemerella anatipestifer RA-YM]
 gi|325336016|gb|ADZ12290.1| UDP-N-acetylmuramyl tripeptide synthase [Riemerella anatipestifer
           RA-GD]
          Length = 486

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 152/475 (32%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL  I            V+ I  DSR    +  + AIKG   DGH FI  AV+KGA 
Sbjct: 3   LRELLHNIPVLETIGALDVEVSSIVFDSRKAEAKSLYVAIKGSVSDGHQFIGSAVEKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           ++V+    +  I   +I    V ++   L +LA         K  ++ +TG+ GKT+   
Sbjct: 63  VIVLED--LPEILDETITYIKVKNLSKVLGQLASNFYGNPSEKLNLVGVTGTNGKTSVST 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168
           +L     ++    A I +    IG  +                    +    ++   E+ 
Sbjct: 121 LLFDVFKNLGYPSALISTVEYRIGDEVFPSTHTTPDVVKLNELLAKAVAQGCEYAFMEV- 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +  T  +   +A  T I   HL       E  + K   F+ L  +     N D
Sbjct: 180 -SSHGIHQNRTEGLHFKVAGFTNITHDHLDYHKTFLEYLNTKKSFFDNLPDSAVAITNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     +D+  R  +       +    +     +     
Sbjct: 239 DKNGLVMLQNTKAKKK----TYALKTLSDYHGRLLEVDFNGMLLNFNGKEVWTSLT---- 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+  GI   L  D    + A+S      GR +  +      F       Y  
Sbjct: 291 GKFNVYNLLLVFGIARELGFDEVEILTAISQLKRVNGRFETIKSEGGIFFVVD----YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  +++I    E             G+   S   ++ ++ +  +   +  S 
Sbjct: 347 TPDALENILDSINEIRTKNERLISV----FGCGGDRDHSKRPEMGKIATQKSTLAIITSD 402

Query: 409 ----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   +   +                            D+++V  K 
Sbjct: 403 NPRTEDPNTIIQEIEAGVEPQCFSKYTVVPDRREAIKMAIKFAEPKDIILVAGKG 457


>gi|150390644|ref|YP_001320693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017291|sp|A6TS66|MURE_ALKMQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149950506|gb|ABR49034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 494

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 154/475 (32%), Gaps = 45/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ I    I    +  +  I  DSR + P   F  I+G   DGH FI  A++KG
Sbjct: 1   MKLMDLLEEIDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V   DM    G   +    V D    + +L      R      +I +TG+ GKT+T
Sbjct: 61  AIAIVAQKDM---TGLDGVTWVQVKDTRQVMAQLGSTFYGRPSQHLELIGVTGTNGKTST 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFE--LG 168
             M+   L + ++    IG+  N IG     A+                 D  + E  + 
Sbjct: 118 TYMIKKILENHERKVGLIGTIANWIGNTEVEAQRTTPESIDLQQIFKEMADEKVTECVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S               + V T + P HL     I+    AK ++F     T    +   
Sbjct: 178 VSSHALALERVAESEFKVGVFTNLTPEHLDFHENIDNYREAKKKLFY---LTTVANVINI 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     + A+       ++ +FG  K A    +      +    ++        V     
Sbjct: 235 DDPHGAMIAEEVKKLKPSLITFGIKKQATVMAKNIATTLKDVTFDLVTPVGEARVTVKIP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N L ++     +    D  ++ +       GR +      +          Y  
Sbjct: 295 GIFSAYNALASIATSIAIGVPFDVIVQGIQSIPGVPGRFESVLGIKDFSVIVD----YAH 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  I     ++ H     I V G     G         +   +S        ++ 
Sbjct: 351 TPDAIENVIQAAKNVTEHR---VITVFG----CGGDRDRTKRSVMGEISGSLSDLSVITS 403

Query: 409 FHVLA---------LKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            ++  + ++  ++   E       +       GD+V++  K 
Sbjct: 404 DNPRTEDPYKILMMIEAGIKKTKGLYTIIEDRREAIRYAMKEAKKGDIVLIAGKG 458


>gi|326409460|gb|ADZ66525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis M28]
 gi|326539166|gb|ADZ87381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis
           M5-90]
          Length = 490

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +         +Y
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AY 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                  +A  +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 349 IDYAHKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|84516395|ref|ZP_01003754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
 gi|84509431|gb|EAQ05889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Loktanella vestfoldensis SKA53]
          Length = 492

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 145/477 (30%), Gaps = 45/477 (9%)

Query: 4   LWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T   L L A QG          +  +++DSR +     F A+ G    G +FI +A++
Sbjct: 1   MTTLTALGLTAAQGR------DATITSLAVDSRDVIKGSLFAALPGAKVHGAEFIQYALR 54

Query: 63  KGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            GA  V+ +          + +    V   +D    L + A          ++A+TG+ G
Sbjct: 55  MGAAAVLTDAAGARIAADVLAASDAAVIVAEDPRQTLAQTASLWFGAHPGIVVAVTGTNG 114

Query: 119 KTTTKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           KT+           +                   +            +            
Sbjct: 115 KTSVSSFCRQIWEEMGLAGVNLGTTGVEGAWAYPLKHTTPEPITLHRVLAEAAGHGITHV 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            +  S  G  +     V    A  T     HL      E   +AK  +F  +     + +
Sbjct: 175 AMEASSHGLDQRRLDGVVLAAAGFTNFTQDHLDYHGTFESYFAAKMGLFTRVLAEDGVAV 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D     + A       + +   G+S +A  +L   +  +    +    QG+      
Sbjct: 235 VNLDDPKGPVVAAICTQRGQEVIGVGRSDDARLRLTGQRFDATGQDLLFTWQGRPHHARL 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG   A+N+L+  G+V    AD      ALS      GR +      N      +D +
Sbjct: 295 ALIGGFQAENVLLAAGLVIAAGADPLDVFAALSQLGTVRGRMELAATRANGA-AVFVDYA 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          L  + PH  GR +A++G     G    S    L    +      V 
Sbjct: 354 HTPDAVET-----ALKALRPHVMGRIVAIIGA----GGDRDSTKRPLMGAAAAEFADSVI 404

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +           A+         +          L     L  GD +++  K 
Sbjct: 405 VTDDNPRSEDPASIRAAVLAGAQGCDSLSEVADRAEAILRGIDMLQPGDALLIAGKG 461


>gi|164688450|ref|ZP_02212478.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
 gi|164602863|gb|EDQ96328.1| hypothetical protein CLOBAR_02095 [Clostridium bartlettii DSM
           16795]
          Length = 175

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 1/170 (0%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +  +L+ A  G       +   +N + IDSR       FFAI G   DGH FI  A++ 
Sbjct: 4   LSIEELVNATSGDLTSKSEEVTSINELVIDSRIANKNSVFFAIIGESLDGHKFINSAIEN 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G   ++ N      I    + +  V++   AL  +A   + +     I ITGSVGKT+T+
Sbjct: 64  GCKTIIKNKSNNFEIIGEDLNIIEVENTEFALGDIARYYKSKFDIPYIGITGSVGKTSTR 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +M+  A+SS  KT    G+ NN  GVPLTLA +    +  + E+GMS   
Sbjct: 124 DMVFSAVSSKFKTLKNTGNLNNQFGVPLTLANLDKSYECAVIEMGMSGFN 173


>gi|313203977|ref|YP_004042634.1| udp-N-acetylmuramoylalanyL-d-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
 gi|312443293|gb|ADQ79649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paludibacter propionicigenes WB4]
          Length = 481

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 90/475 (18%), Positives = 162/475 (34%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+LQ +            V+GI  DSR +  +  F A +G   DGH +I  A++ GA 
Sbjct: 3   LDDILQNVILLKTIGNIDINVSGIQFDSRKVEAENVFVATRGTASDGHQYIATAIENGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
            +V     + S  + +I    V+D   AL K+A A      +K T++ +TG+ GKTT   
Sbjct: 63  AIVCEE--LPSEINPNITYVKVEDSSDALGKMASAWYDFPSTKMTLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFELGMS 170
           +L      +      + +  N                     L    VD       + +S
Sbjct: 121 LLYQLFRELGHKSGLLSTVCNYVNDLAVEATHTTPDALALNALLAQMVDAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +    A+ T I   H+      E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQHRISGLEFDGAIFTNITRDHIDYHLTFENYLKAKKQFFDNLSTDAFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   S A      Y++     ADF+ R  +   E   +++  +  ++  +      
Sbjct: 241 NGLVMLQNSKAKK----YTYSLRGMADFKTRILEHGFEGMLLDMNDKEVNVSFIGKFNAS 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +++      + +           ++ L +         R+    +   +T I + Y   P
Sbjct: 297 NLSAVFGAAVLLG-------QDELEVLRIISSLHSVSGRFETLHSPAGYTAIVD-YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLSG- 408
            ++   I  ++QI   G GR I V+G     G          +A      +   +  S  
Sbjct: 349 DALVNVIGTINQI-LQGNGRLITVVG----CGGNRDKGKRPMMAREAVNGSWKAILTSDN 403

Query: 409 ----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +LA  D + ++  +              +    GDVV+V  K 
Sbjct: 404 PRFEEPQEILNDMLAGLDVVEKAKSLTIV-DRREAIKTACALAQAGDVVLVAGKG 457


>gi|256045066|ref|ZP_05447967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113989|ref|ZP_05454772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 3 str. Ether]
 gi|265991493|ref|ZP_06104050.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995331|ref|ZP_06107888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|262766444|gb|EEZ12233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 3 str. Ether]
 gi|263002277|gb|EEZ14852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 490

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|260566059|ref|ZP_05836529.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
 gi|260155577|gb|EEW90657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella suis bv. 4 str. 40]
          Length = 488

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 77/454 (16%), Positives = 141/454 (31%), Gaps = 35/454 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + GI+ DSR++     F A+KG   DG  F   AV++GA  ++   D   +I 
Sbjct: 15  GEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRGAVAIIAGKDT--AIA 72

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  VDD    L   A     +    ++A+TG+ GKT+         +      A 
Sbjct: 73  DAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVASFTRQIWAYAGFPAAN 132

Query: 140 IGSYNNHIGVPLTLARMPVD------------VDFGIFE--LGMSHLGEIRFLTHLVRPH 185
           IG+             +                  G+    +  S  G  +     VR  
Sbjct: 133 IGTTGVFSPTRSDYNSLTTPDPVELHRVLAELTSEGVTHAAMEASSHGLDQRRLDGVRLA 192

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               T +   H+   + I+E   AK  +F  L   G   + + D  F     ++  L   
Sbjct: 193 AGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADDQFSAQAIEAATLAGC 252

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G+       +   +   E+    V+++                Q     +     
Sbjct: 253 DVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLAGDFQVANALVAAGLA 309

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   V  A    ++   K   G+       +       +  +   A      +VL+ + P
Sbjct: 310 MVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPEA----LENVLTSVRP 365

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALP 419
              GR I V G     G         +   ++      V ++  +           + + 
Sbjct: 366 FTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDNPRSEVPAQIRSEIMA 421

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                 S +  GD +VV  K 
Sbjct: 422 AATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|237742227|ref|ZP_04572708.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
 gi|229429875|gb|EEO40087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 4_1_13]
          Length = 485

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 157/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134

Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V               +    +   +++ + E+    L   R    +V    A
Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + + +        +  +++++ + +  ++    +G     N L  +GI   + 
Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKIKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   ++      V L+  +            +K   
Sbjct: 361 VNRVITIFG----CGGDRDRTKRPIMAKVAEDLSDIVILTSDNPRTESPEQIFDDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYFFEPDREKAIKVAVNMAEKNDIILITG 449


>gi|172057839|ref|YP_001814299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990360|gb|ACB61282.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 487

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 89/472 (18%), Positives = 172/472 (36%), Gaps = 41/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ IQ      + +  V  ++ DSR + P   F AIKG   DGHD+   A  +G
Sbjct: 1   MNLAELIEVIQTQKTERMVEAVVTSLTTDSRDVKPGTLFVAIKGYTVDGHDYAKQAEAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
           A  +V        +  ++IPV  V     A+ +LA         K  +I ITG+ GKTTT
Sbjct: 61  AVAIVSER-----LLDVTIPVILVRSTTRAMAELAGKFYDYPSEKMRMIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---VPLTLAR---------MPVDVDFGIFE--LG 168
             ++   L+ + +    IG+    IG   VP                     G+ +  + 
Sbjct: 116 TTIVRDVLAQLGRKTGIIGTVEVKIGDRVVPSRNTTPQSSELQAFFHQMHQEGVEDVIME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G            +A  T +   HL      E  A AK  +F  L +  +      
Sbjct: 176 VSSHGLELGRVTGTDFDVAGFTNLTHDHLDFHKTFENYARAKGLLFAQLGQRLSDKKVAV 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + +      +    + ++G  + AD Q +   Q  +++   +  Q +++E+    I
Sbjct: 236 LNADDEISHLFEMMTGARVLTYGIEQPADLQAKNITQTLQETTFTMVYQEQAVELTVQFI 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+  GI+  +   +     A++   P +GR +R        +       Y  
Sbjct: 296 GRFNVYNLLLATGILLSIGYSLTEISNAITQIQPAKGRMQRLPIDGYNIYV-----DYAH 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P  ++  +  L  +          ++  +   G    +    + ++ S Y  + V  + 
Sbjct: 351 TPDGIEQCLKALVDVPKEN------IIFLIGTGGNRDVTKRPMMGQLASTYAGTVVITTD 404

Query: 409 FHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +++   I     H  + E    +    +  S     ++V++  K 
Sbjct: 405 DPRFESYESITSGIASGMLHDQFVEIGDREEAVRYAASLARPDNIVILAGKG 456


>gi|62290329|ref|YP_222122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 1 str. 9-941]
 gi|82700253|ref|YP_414827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189024562|ref|YP_001935330.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
 gi|254689630|ref|ZP_05152884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 6 str. 870]
 gi|254697772|ref|ZP_05159600.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730661|ref|ZP_05189239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 4 str. 292]
 gi|256257880|ref|ZP_05463416.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus bv. 9 str. C68]
 gi|62196461|gb|AAX74761.1| MurE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82616354|emb|CAJ11411.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Cytoplasmic
           peptidoglycan synthetases,
           C-terminal:UDP-N-acetylmuramyl-tripe [Brucella
           melitensis biovar Abortus 2308]
 gi|189020134|gb|ACD72856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella abortus S19]
          Length = 488

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 356 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|114773350|ref|ZP_01450554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
 gi|114546284|gb|EAU49195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [alpha proteobacterium HTCC2255]
          Length = 498

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/453 (18%), Positives = 149/453 (32%), Gaps = 36/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---- 79
              +  I +DSR I     F A+ G  Y G  F+  A++  A  V+ + D          
Sbjct: 25  DPIITNICVDSRLIESGNLFVAMPGSKYHGIKFLKAALENNAAAVLTDEDGFNFAKKIFT 84

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            + IP+   +D    L+K          +T+IA+TG+ GKT+           + K    
Sbjct: 85  KIDIPIIVSNDPRMILSKTVARFFGVQPSTMIAVTGTNGKTSVANFTRQIWECLGKKAVN 144

Query: 140 IGSYNNHIGV----------PLTLARMPVDVD-FGIFE--LGMSHLGEIRFLTHLVRPHI 186
           IG+      V          P  L ++  +++  G+    +  S  G  +     V    
Sbjct: 145 IGTAGVEGAVSINLSHTTPEPTLLHKILYEIEANGVTHASMEASSHGLDQKRLDGVYLTA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T     HL      +   ++K  +FE +       +   D    L   +   L  + 
Sbjct: 205 AAFTNFTHDHLDYHETFDAYFNSKLGLFERVLSPEGSVVINMDDPKGLYIYEVAKLRGQD 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I + GK  N D  L+     +    +    + +   V    IGY  A N+L    +V   
Sbjct: 265 IITVGK-NNCDLTLKNCTFDATGQQILFSWRDEIKSVRLDLIGYFQAMNILQAAALVIAC 323

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +     LS      GR +      N      +D ++  +          L  + PH
Sbjct: 324 GEQPNDVFDTLSELRTVSGRMQLAAKRSNGA-SVFVDYAHTPDAVET-----ALKAMRPH 377

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
             GR + ++G     G        +L    +      V+++          +++ ++   
Sbjct: 378 VMGRLLIIVGA----GGDRDKSKRELIGEAAQKYADVVFVTDDNPRSEDPDSIRKSILLG 433

Query: 422 IH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                         L    +L  GD +++  K 
Sbjct: 434 CPDAIEIGDRARAILTGVDALKPGDALLIAGKG 466


>gi|1165288|gb|AAA85627.1| MurF [Borrelia burgdorferi]
          Length = 397

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 95/407 (23%), Positives = 171/407 (42%), Gaps = 18/407 (4%)

Query: 64  GAGLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           G      + +  +        +  +      +V+  L  LA     ++    IAITGS G
Sbjct: 3   GVKCFACSREHESECIKYLNDNEGLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNG 62

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTTKEML   LS   KTY   G+ N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L
Sbjct: 63  KTTTKEMLYSILSKKYKTYKTWGNLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLL 122

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           + +++P I +IT I+ AH+  F  ++ IA  K++I     +   +    D   +   +AK
Sbjct: 123 SQILKPEIVIITNISYAHMQAFKELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAK 182

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                +K +Y   ++ +                       K  E     +G H   N + 
Sbjct: 183 IANPNVKIVYFDFENLSI------KSFSFLDGKFSFDFVYKGFEYSILLLGRHNIFNAIG 236

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L        +       +    K     L +  + ++++SYN N  S  A  +
Sbjct: 237 CINLALFLGMREKEIKEG----LIETAFQKGRAEILTKNGYLILNDSYNGNMGSFMALKN 292

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           ++  ++   +     VLG   E+GEL+   H DL +     N   ++L G   L ++D+ 
Sbjct: 293 MILDLNIQNKK--FIVLGSFKELGELAYKTHKDLIQEAISMNFDKIFLIGEEFLDVRDSE 350

Query: 419 PRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                  +Y    D    F   SL     +V+K S      R++N +
Sbjct: 351 NLVEKCLYYFSEFDKFIDFFLKSLEPSVFIVIKGSRFNRLERILNYI 397


>gi|225852918|ref|YP_002733151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis ATCC 23457]
 gi|225641283|gb|ACO01197.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella melitensis ATCC
           23457]
          Length = 488

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 155/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A ++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +         +Y    
Sbjct: 297 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AYIDYA 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
              +A  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 351 HKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|265999395|ref|ZP_05466133.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
 gi|263093652|gb|EEZ17657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 2 str. 63/9]
          Length = 499

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 10  MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 67  AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +         +Y
Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAP------AY 357

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                  +A  +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 358 IDYAHKPEALENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|294782939|ref|ZP_06748265.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
 gi|294481580|gb|EFG29355.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 1_1_41FAA]
          Length = 485

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 72/455 (15%), Positives = 151/455 (33%), Gaps = 46/455 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                 +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +       
Sbjct: 16  DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    +D++   L  +A       + K  II +TG+ GKT++  M+   +     T   
Sbjct: 74  -VSYVLIDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132

Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              Y     V               +    +   +++ + E+    L   R    ++   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+       N DD + + L  +      +
Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDEFIEDNPE 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I       + + +        +  +++++ + K  +V    +G     N L  + I   
Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKEKVEKVKFALLGDFNLYNTLGAVAIARK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  ++ +S      GR +   C  +          Y   P ++   I     I  
Sbjct: 305 MGISWEDILERVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
               R I + G     G         +    +      V L+  +            +K 
Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAENLSDIVILTSDNPRTESPEQIFADVKA 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++    +    +       +     D++++  
Sbjct: 415 GFTKTDDYLFEPDREKAIKLAINMAEKNDIILITG 449


>gi|34581456|ref|ZP_00142936.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
 gi|28262841|gb|EAA26345.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 26-diaminopimelate ligase
           [Rickettsia sibirica 246]
          Length = 479

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKSIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 70  YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129

Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                     VP            +        +++ +FE   S  G  +     ++ +I
Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIDFVKDYLHNHNIK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   + +          +   +      +        IG   A N+L+ +  +  +
Sbjct: 248 FITVGTKGDLEITRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKVLTELKNI--------KL 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            + +   V G     G         L   ++      + ++  +            +   
Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++ +   +   +    +  ++L   D+++V  K 
Sbjct: 414 IEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448


>gi|298377155|ref|ZP_06987109.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
 gi|298266139|gb|EFI07798.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_19]
          Length = 486

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            +V         G  S     V D   AL  L             ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    ++     V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERALCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|260565335|ref|ZP_05835819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
 gi|260151403|gb|EEW86497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 156/473 (32%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 10  MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            ++GA  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 67  AKRGAVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|126735374|ref|ZP_01751120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
 gi|126715929|gb|EBA12794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter sp. CCS2]
          Length = 495

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 46/479 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  +L     G +     +  + G+++DSR + P   F A+ G    G +FI +A++ 
Sbjct: 1   MKSLAEL-----GLTARGGREAQITGLAVDSRDVKPGFLFAALPGARVHGGEFIQYALRM 55

Query: 64  GAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            AG ++ +          + +    V    D   AL + A         T+IA+TG+ GK
Sbjct: 56  KAGAILTDAKGAEIAADELAASDAAVIVAQDPRQALAQTASLWFGAHPKTVIAVTGTNGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIF-----------E 166
           T+           +      +G+         PL            +             
Sbjct: 116 TSVSTFCRQIWEELDLPGVNLGTTGVEGAWNHPLKHTTPEPITLHRVMAEAAQNGITHVA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     V    A  +  +  HL      E    AK  +F+ +     + + 
Sbjct: 176 MEASSHGLDQRRLDGVILAAAGFSNFSQDHLDYHETFEAYFDAKMGLFQRVLSEDGVAVI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D       A       + +   G+  +A  +L   +  +    +  + QG++ +    
Sbjct: 236 NLDDPKGKEVAAICTARGQEVIGVGRHTDARLRLTGQRFDATGQDLLFEWQGRARQARLE 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG   A+N+L+  G+V    AD D     L       GR +      +      +D ++
Sbjct: 296 LIGGFQAENVLLASGLVIAAGADPDEVFDTLQYLTTVRGRMELAATRQSGA-AVFVDYAH 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +          L  + PH  GR I ++G     G    +    L    +  +   V +
Sbjct: 355 TPDAVET-----ALRAMRPHVMGRIIVIVGA----GGDRDAGKRPLMGAAAAQHADIVIV 405

Query: 407 SG-----FHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A++ A          S  +          L     L  GD +++  K 
Sbjct: 406 TDDNPRSEDPAAIRAAVMAGAVDAGGSDSITEVGDRAEAILRGIDMLGAGDALLIAGKG 464


>gi|30316384|sp|Q8YI71|MURE_BRUME RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 488

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 142/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A ++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|253576126|ref|ZP_04853458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844469|gb|EES72485.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 496

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/470 (14%), Positives = 136/470 (28%), Gaps = 54/470 (11%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I    +    GI+IDSR + P + F  + G   DGHD+   A ++GA  +VV       +
Sbjct: 15  IRGDGETSCTGIAIDSRKVQPGDLFICLPGHTVDGHDYARQAEEQGAAALVVER----WL 70

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIA----------------ITGSVGKT 120
             +++P   V D   A+  L         S+  +I                 I    G+ 
Sbjct: 71  DDVALPQLKVKDSRQAMAVLGGVFFGAPSSRLKVIGVTGTNGKTTTTYLIERILQDQGRE 130

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T          + +       +  +               ++ + E+  SH      +  
Sbjct: 131 TGLIGTIQRRFAGQTYPMSGTTPESLELQQYLHDMAEGGGEYCVMEV-SSHALAQGRV-K 188

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG----LEKTGTIFLNYDDSFFELLK 236
             R   AV T +   HL     ++E   AK   F        +          +  +   
Sbjct: 189 GTRFRTAVFTNLTQDHLDYHKTMDEYRWAKGLFFSRLGNTYAENPEERSYAVLNVDDPAS 248

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A         + ++G  ++AD +       +  +   V     S ++    +G     N 
Sbjct: 249 AYFAKQTAAEVITYGVEQDADVRASNISITARGTSFHVDTFRGSADISLRMVGKFNVYNA 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +    +    ++    +L      EGR +      +         + +         
Sbjct: 309 LAAISATLLEGIPLEQIKASLESVKGVEGRVEAVDEGQDFAVIVDYAHTPDG-------L 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
            +VL  ++   +GR I V G     G         +   ++     +V ++         
Sbjct: 362 ENVLRTVNEFAKGRVICVFG----CGGDRDRKKRPIMGQIAAKYADYVLVTSDNPRTEDP 417

Query: 412 LALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A+   + +                                DVV++  K 
Sbjct: 418 QAILRDIEQGLVEDGVDQARYELIVDRREAIGKAIEMASREDVVLIAGKG 467


>gi|254880786|ref|ZP_05253496.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|319639796|ref|ZP_07994526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
 gi|254833579|gb|EET13888.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 4_3_47FAA]
 gi|317388613|gb|EFV69462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. 3_1_40A]
          Length = 484

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 95/476 (19%), Positives = 161/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDASQEISGINMDSRLIEPGHIFVAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +      ++    V+D    + KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK   F+GL KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDGLPKTAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     ++++     +DF+ +  +   E     + L   ++EV    I
Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGAACLLGKKAEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V+G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|189501432|ref|YP_001960902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
 gi|189496873|gb|ACE05421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium
           phaeobacteroides BS1]
          Length = 500

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 94/485 (19%), Positives = 176/485 (36%), Gaps = 49/485 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M PL    + L  +     GI  +  +  I+ DSR  +    F A++G   DGH+FI  A
Sbjct: 1   MVPLKRLLERLD-VSAVVGGIQSEMRIGNITSDSRKASKDTLFVAVRGFVTDGHEFIGDA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118
           V  G+  VV     +    +  +    V D   A+ ++A A       + +II +TG+ G
Sbjct: 60  VSLGSKAVVCEE--LPETPAERVLFILVPDARRAMAQIAKAFYGDISDRLSIIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDF 162
           KTTT  ++   ++        IG+     G                  L           
Sbjct: 118 KTTTARLMAGMMNDCGIRTGYIGTGLALAGDEKILLERTTPEAEELHRLFSIMAERGCRA 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  SH   ++    +V    AV T +   HL     +E  ASAK  +F  +   G 
Sbjct: 178 VVMEV-SSHALVLQRTFGIV-FSGAVYTNLTQDHLDFHHTMESYASAKRLLFGAVSPEGF 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQ 277
           + +N DD     +        +    + G S  A  + + +     +   + + + +   
Sbjct: 236 VVVNADDPRAGFMAENRGKSRLY-CCTVGDSHYACSEGKAFSATLLEAGLQAARVAIDAD 294

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G+  +V+    G     N+L        L  + +  +++LS   P EGR +  R A    
Sbjct: 295 GRGYDVLFRLTGLFNVMNLLEVFASGVALGLEPEAVLRSLSTSSPVEGRMEIVRDAAGDF 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +    Y   P +++  I  L+++ P  EG  I V G     G         +   ++
Sbjct: 355 FAVVD---YAHTPDALEKVIGTLNELKPE-EGELIVVFG----CGGNRDHEKRSVMGRIA 406

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 + ++  +            + + +    ++ +            + L +GD+++
Sbjct: 407 SRGADRLIITSDNPRDENPESILDDIAEGIVSPGYMRFC-DRAEAIHCGVNLLKEGDILL 465

Query: 449 V--KS 451
           V  K 
Sbjct: 466 VAGKG 470


>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040779|gb|ACT57575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 497

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 133/453 (29%), Gaps = 36/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  +N +S DSR I     F AI G   DGH FI  A+ +GA  +VV++       S +I
Sbjct: 27  ERKINEVSSDSRHIQAGWIFVAIVGNKEDGHLFIPQAIAQGAEAIVVSSAYSLQDFSATI 86

Query: 84  ----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
               P+  VD+    L+  A     +    I+A+TG+ GK++    +         +   
Sbjct: 87  RSNTPILVVDNTRKFLSLFASRLYGKHPENILAVTGTSGKSSVASFVQQICQRSGLSSFQ 146

Query: 140 I--------GSYNNHIGVPLTLA---RMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHI 186
           I         + +N +  P  +     +      G+    +  S  G  +     ++   
Sbjct: 147 IGPTSTISSFAQDNRLTTPSPIYLAKALSYLSSQGVTHVSVEASSHGLDQHRLDGIKLIA 206

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+      +   +AK  +FE L    +  + Y D  +     K        
Sbjct: 207 GSFTNLGRDHIDYHQTQQAYFNAKMRLFEELLPKESPAIIYADDAYSKEVMKRAHNAGCR 266

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + S G         +     ++Q                          +   L    + 
Sbjct: 267 VLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKDFD----FLFPLPGEFQVYNALVAAGLC 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A    +   L           R+           I   Y     S++  +     I   
Sbjct: 323 IAIGIDSALVLEHLEKLHVVPGRFEFVGTNSRGGRIYVDYAHTSNSLEMILKN---IRTI 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
             GR I V G     G         +   ++L       ++           ++  +   
Sbjct: 380 TSGRIIVVFG----CGGDRDQGKRPIMGKIALDLADIAIVTDDNPRSEDPEKIRAEIIHG 435

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
           I     +             L   DV+VV  K 
Sbjct: 436 IPGFIEKGNRIEAIRTAIEMLNKQDVLVVAGKG 468


>gi|15604447|ref|NP_220965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii str. Madrid E]
 gi|6093449|sp|O05954|MURE_RICPR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2073485|emb|CAA72473.1| UDP-MurNAc-tripeptide synthetase [Rickettsia prowazekii]
 gi|3861141|emb|CAA15041.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE-- 2,6-DIAMINOPIMELATE LIGASE
           (murE) [Rickettsia prowazekii]
 gi|292572219|gb|ADE30134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia prowazekii Rp22]
          Length = 480

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 87/457 (19%), Positives = 155/457 (33%), Gaps = 48/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+S +S+++   E FFAIKG + DG+DFI  A+  GA LV+       +I     
Sbjct: 11  NHRIKGLSTNSKTVKEDEVFFAIKGQNVDGNDFINDALNNGAVLVITENKNNTAID---- 66

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            V  V+DV  AL +       +    +I++TG+ GK++    +  A S +KK  A IG+ 
Sbjct: 67  KVIYVEDVHKALYEAIEIFYPKKPKNLISVTGTNGKSSVVSYIAQAYSLLKKKAAFIGTI 126

Query: 144 NNH--------IGVPLTLARMPVDVDFGIF----------ELGMSHLGEIRFLTHLVRPH 185
                        VP       +                     S  G  +      + +
Sbjct: 127 GLEIFGSNNIINDVPSLTTFDYLSFRKVAHNLAEDSIEYLAFEASSHGLEQGRLGKTKVN 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I   T+ +  HL      E    AK ++F        I +   D                
Sbjct: 187 IVSFTSFSQDHLDYHHTKENYLLAKLKLFTDHLLPSGIAILNSDIEEIEFVKDYLHNNNV 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + GK    D Q+ K         ++         +    IG   A N+L+    +  
Sbjct: 247 KFITVGK--KGDLQITKITCSLTGQNIDFIFNNIIYNLHTLIIGSFQASNLLIAALTLYY 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D  I+AL+   P +GR         +   T I   Y+  P S++ A+  L  I  
Sbjct: 305 TGFKFDEIIEALAKVKPIKGRM-------ERIDGTNIFVDYSHTPDSLEKALIELKNIKL 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           HG       L  +   G         L   ++     +V ++  +            +  
Sbjct: 358 HGSK-----LSVIFGCGGDRDKTKRALMGQIAAKLADNVIITDDNPRFEDPKLIRAEIIR 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  + +   + +      +  ++L   D++++  K 
Sbjct: 413 GIGTATYTEIA-SRAEAIKYGINNLKQDDILLIAGKG 448


>gi|260755158|ref|ZP_05867506.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758377|ref|ZP_05870725.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762203|ref|ZP_05874546.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884171|ref|ZP_05895785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
 gi|260668695|gb|EEX55635.1| meso-A2pm-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672635|gb|EEX59456.1| meso-A2pm-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675266|gb|EEX62087.1| meso-A2pm-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873699|gb|EEX80768.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Brucella abortus bv. 9 str. C68]
          Length = 490

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 3   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 62  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 120 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 180 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 240 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 298

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 299 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 358 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 408

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 409 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|255015711|ref|ZP_05287837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. 2_1_7]
          Length = 486

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            +V         G  S     V D   AL  L             ++ +TG+ GKTT   
Sbjct: 63  AIVCEEAPSYLEGRCS--FIVVKDSAEALGLLVSRWYGDPSGKLVLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    ++     V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|229586939|ref|YP_002845440.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
 gi|228021989|gb|ACP53697.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia africae ESF-5]
          Length = 479

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDIFFAIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  AL +       +    +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 70  YVKDVQAALYEAIEIFYPKKPKDLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 129

Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                     VP            +        +++ +FE   S  G  +     ++ +I
Sbjct: 130 IFGCVNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 188 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 247

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + G   + +          +   +      +        IG   A N+L+ +  +  +
Sbjct: 248 FITVGTKGDLEIIRLNGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYI 305

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 306 GFAFDDVIDSLVEVKAVKGRMERIDNTNIFVDYAHTPDALEKALTELKNI--------KL 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
            + +   V G     G         L   ++      + ++  +            +   
Sbjct: 358 RDSKLSVVFG----CGGNRDKAKRSLMGQIAAKRADTIIITDDNPRHEDPKLIRAEIISG 413

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++ +   +   +    +  ++L   D+++V  K 
Sbjct: 414 IGKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448


>gi|85858520|ref|YP_460722.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
 gi|85721611|gb|ABC76554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophus aciditrophicus SB]
          Length = 509

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/498 (16%), Positives = 152/498 (30%), Gaps = 67/498 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                LL+ I    I      +  V+ +  +SR   P   F AI+G   DGH++I  AV+
Sbjct: 1   MNLSILLKGINILGISGPSGSEVNVSSVCYNSRQCTPDSLFVAIRGLKSDGHEYIDDAVR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
            GA ++V   ++        I V  V++    L  LA             +A+ G+ GKT
Sbjct: 61  CGAKVIVCEKEV---TMPPEITVVRVENGRRTLGLLARNFYADPSRCLVAVAVMGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDV---DFGIFEL--------- 167
           T   +L     +   +          + G+ +       +       I E+         
Sbjct: 118 TVTYILESIFQAAGFSCGVLGTVNYRYPGLVMEAPNTTPESLDLQRIIREMVDHGVTHLV 177

Query: 168 -GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE------GLEKT 220
             +S               + + T +   HL     +E    AK   F         +  
Sbjct: 178 AEVSSHAVDLRRIDDCDFDLGIFTNLTQDHLDYHKTMENYFQAKKRFFSEVLPGGRKQHR 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N DD + + L  ++    I    +FG  + AD +   +    +    E+ +   S
Sbjct: 238 YAMAVNADDPWGKRLIRET--GEISRPLTFGIEEKADIRASSFDLSLDGIRAEIVVGSMS 295

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    IG     N+L  +     L   ++   + +   +   GR              
Sbjct: 296 FDVDTALIGKFNLYNVLAAVSASVALRVPIEAIRRGVRAMNAVPGR---LEKVSGSTQPD 352

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +  +  + + A       VL  +SP   GR I V G     G         L   ++   
Sbjct: 353 VFVDYAHTDDA----LRRVLQSLSPFKRGRIITVFG----CGGDRDRGKRPLMGKVATNY 404

Query: 401 ISHVWL------------------SGFHVLAL----KDALPRSIHVH---YSETMDGLFL 435
                L                   G +  ++     + L R +                
Sbjct: 405 SDLTILTSDNPRSEDPLSIIRDIEVGINSQSIPEGSSEDLSRGMTGRGYVVIPDRREAIG 464

Query: 436 FIQSSLVDGDVVVV--KS 451
               S    D+V++  K 
Sbjct: 465 AAIRSARPSDIVLIAGKG 482


>gi|237739966|ref|ZP_04570447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
 gi|229421983|gb|EEO37030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 2_1_31]
          Length = 485

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 152/455 (33%), Gaps = 46/455 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                 +GI  DSR +     F A++G + DGHD+I  AV+ GA  ++V+  +       
Sbjct: 16  DLNRKYDGIEYDSRKVKENYIFVALEGANVDGHDYIDSAVKNGATCIIVSRKVEMKHK-- 73

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +    +D++   L  +A       + K  II +TG+ GKT++  M+   +     T   
Sbjct: 74  -VSYVLIDEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDTPITRIG 132

Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              Y     V               +    +   +++ + E+    L   R    ++   
Sbjct: 133 TIEYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVD--VLDFD 190

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E    AK ++F  L+       N DD + + L  +      +
Sbjct: 191 YALFTNLTQDHLDYHVTMENYFQAKRKLFLKLKDINNSVFNIDDKYGKRLYDEFIEDNPE 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I       + + +        +  +++++ +GK  +V    +G     N L  + I   
Sbjct: 251 IISYGIDGGDLEGE------YLDDGYIDIKFKGKVEKVKFALLGDFNLYNTLGAVAIAIK 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +    +  +K +S      GR +   C  +          Y   P ++   I     I  
Sbjct: 305 MGISWEDILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNIR- 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
               R I + G     G         +    +      V L+  +            +K 
Sbjct: 360 -NGNRIITIFG----CGGDRDRTKRPIMAKAAEDLSDIVILTSDNPRTESPEQIFADVKI 414

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++    +    +       +     D++++  
Sbjct: 415 GFTKNDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|164687944|ref|ZP_02211972.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
 gi|164602357|gb|EDQ95822.1| hypothetical protein CLOBAR_01589 [Clostridium bartlettii DSM
           16795]
          Length = 485

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 155/469 (33%), Gaps = 44/469 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+ ++  S+       +  IS DSR +     F  I+G   DGH++I  A+QKGA  ++
Sbjct: 6   ILKDVEILSVNGQVDIDIEDISYDSRKVKQNSMFLCIRGNTVDGHNYIDDAIQKGAIAIL 65

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
           ++  +        I    V++V  ++  +          K  +I +TG+ GKT+T   + 
Sbjct: 66  IDKKISYK---KGITYIRVNNVKESMAIIGKNFFQNPCQKINLIGVTGTNGKTSTVSFIK 122

Query: 128 IALSSIKKTYACIGSYNNH--------IGVP-----LTLARMPVDVDFGIFELGMSHLGE 174
             L    K  +                   P            +  +     + +S    
Sbjct: 123 QILGYDCKVGSIGTIEIYDGKKTITSINTTPESLDIQKNLNEMIKNNCKYCVMEVSSHAL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +      +    AV T +   HL     +E   +AK ++F   +       N DD   E 
Sbjct: 183 VLNRIDNIDYEAAVFTNLTQDHLDFHKTLENYKNAKEKLFY--KTKSINIFNIDDKVGEE 240

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              KS        Y++G  K ADF+    K   +++  ++ +  +  +V    +G     
Sbjct: 241 FFNKSLNR-DIKTYTYGVEKEADFKAANIKLYDDRTEYDLIIDKQKYKVSTPILGNFNVY 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +    +L    +  IK +       GR  +     N         + +A      
Sbjct: 300 NTLAAITTCILLGLSREDVIKRVQNLKSVSGRLDKVENDKNVNIIVDYAHTPDA------ 353

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SG 408
             +++L       + R I V G     G         +   ++  N     +        
Sbjct: 354 -LLNILKSARLFTKNRIILVFG----CGGNRDKAKRPIMGKIAQQNADISIITSDNPRFE 408

Query: 409 FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  ++D L        +    +  +            GD++++  K 
Sbjct: 409 KEMDIIEDILCGIDKTLDNYFVVQDREDSIKKAIELYEVGDLIIIAGKG 457


>gi|328952335|ref|YP_004369669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452659|gb|AEB08488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 531

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 152/488 (31%), Gaps = 56/488 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               LL  ++   I    Q  V G++  S  +A  E F A+KG   DGH +I  A+++GA
Sbjct: 11  NLAQLLSGLKYLRIWGDEQVPVQGLAYHSGRVASGEVFVALKGCQTDGHLYIDKAIERGA 70

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            +VV+   +  + G   +    V D   AL  +A A         T++ ITG+ GKTTT 
Sbjct: 71  AVVVLEDAVEPTPG---VVCVQVPDTRLALAHMAAAFYDHPSCNLTVVGITGTNGKTTTS 127

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----DVDFGIFELGM---------- 169
            +L     +       IG+ N   G  +  + +      D+   + E+            
Sbjct: 128 YLLEAIWQASGAQVGVIGTVNCRFGSQVRSSPVTTPESLDLQDLLAEMRAAAVDCAIMEV 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-YD 228
           S           VR    + T ++  HL     +E   + K+ +F  L            
Sbjct: 188 SSHALDLKRVQAVRFAAGLFTNLSQDHLDYHGDMESYFAVKSRLFCELLTDCGDGPQLAV 247

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    K        + ++G +  AD +        +     +      +++V   +
Sbjct: 248 INRDDPWGQKLLPQTSPPVLTYGFAAGADIRPEDITLTHQGIQARLHTPYGRLDIVSPLM 307

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N+L   G    L    +  +  L+     +GR +                + +A
Sbjct: 308 GRYNLYNILAASGAALGLGISPEHVVTGLANITGVDGRLEPVAAPGQPLVLVDYAHTPDA 367

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     VL+ +      R I V G     G         L   +       V ++ 
Sbjct: 368 -------LEKVLAALKALDFDRIITVFG----CGGDRDRRKRPLMGQVVARGSDVVIITS 416

Query: 409 FHVL-----------------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +                          + +A                     +    G+
Sbjct: 417 DNPRTEEPLAIIEDILAGLREMNCPRLDVSEAREGHRGYLVIADRRQAIRQAIAIGNPGE 476

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 477 VILLAGKG 484


>gi|237815836|ref|ZP_04594833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260546871|ref|ZP_05822610.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297248716|ref|ZP_06932434.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
 gi|237789134|gb|EEP63345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella abortus str.
           2308 A]
 gi|260095921|gb|EEW79798.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella abortus NCTC 8038]
 gi|297175885|gb|EFH35232.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Brucella abortus bv. 5 str. B3196]
          Length = 499

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 83/469 (17%), Positives = 156/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 12  MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 70

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 71  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 129 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 189 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 248

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 249 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 308 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 366

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 367 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 418 PRSEVPAQIRSEIMAVATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|315633812|ref|ZP_07889101.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
 gi|315477062|gb|EFU67805.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aggregatibacter segnis ATCC 33393]
          Length = 488

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 81/466 (17%), Positives = 150/466 (32%), Gaps = 46/466 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     +  +++DSR+      F AIKG   DG  +I  A+Q GA  V+   D     
Sbjct: 10  IHIAENVNLTEMTLDSRTAKAGCLFVAIKGHQTDGRQYIPQALQNGASAVIFEADSETQH 69

Query: 79  GSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS 132
             +     +P+     +   L+ LA     +     T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVRYEQQVPLIAFYRLSEHLSHLADVFYGQPSKRLTLVGVTGTNGKTTTAQLLAQWTKI 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176
           +  T A +G+  N  G+   +          +                  + +S  G ++
Sbjct: 130 LGHTSAVMGTIGN--GLFGRVKEATNTTGSAVEIQASLAEFVAQGADFAAIEVSSHGLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V    AV T ++  HL     +E  A+AK  +F  L+    I    D      L 
Sbjct: 188 HRVEAVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFSELDSRHHIIDADDPVGAAWLA 247

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               A+ +     F   +    +        + + ++ +    + E+    IG     N+
Sbjct: 248 EMPEAVAVSANADFAPRQAKWLKAVNVSFNHKGASIQFESSWGNGELQSALIGAFNVSNL 307

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ +  +  L  D+   I +        GR +                + +A        
Sbjct: 308 LLIMATLLALGYDLAELIGSAHKLTGVCGRMEMLHAPHKPTVIVDYAHTPDA-------L 360

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
              L     H  G+   + G     G    S    L   ++      V  +  +      
Sbjct: 361 EKALQAARLHCHGKLWCIFG----CGGDRDSGKRPLMAKIAEQLADKVIATDDNPRTEDH 416

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  +         V      +        S V+ DV+++  K 
Sbjct: 417 TQIMADILKGFIHPQAVQVIHQREEAIATAIQSAVENDVILIAGKG 462


>gi|294785201|ref|ZP_06750489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
 gi|294486915|gb|EFG34277.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Fusobacterium sp. 3_1_27]
          Length = 485

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 78/453 (17%), Positives = 156/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134

Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V               +    +   +++ + E+    L   R    +V    A
Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNSEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                S + +          +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIDSGDLEG------DYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  N          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   +       + L+  +            +K   
Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|17986857|ref|NP_539491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
 gi|17982494|gb|AAL51755.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Brucella melitensis bv. 1 str. 16M]
          Length = 499

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/469 (17%), Positives = 155/469 (33%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A ++G
Sbjct: 12  MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAAKRG 70

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 71  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 129 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 188

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 189 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 248

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+     G 
Sbjct: 249 QFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELPLAGD 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +       A++AL++     GR        +      +D ++    
Sbjct: 308 FQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAHKPEA 366

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 367 LE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 417

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 418 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 466


>gi|294677018|ref|YP_003577633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
 gi|294475838|gb|ADE85226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodobacter capsulatus SB 1003]
          Length = 494

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 88/460 (19%), Positives = 160/460 (34%), Gaps = 34/460 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        V G+S+DSR + P   F A+ G    G  F+  A+++GAG V+ +    
Sbjct: 12  GLTARPGSDVAVTGLSVDSRLVKPGHLFAALPGTRVHGATFVTAALERGAGAVLTDRAGE 71

Query: 76  A----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                ++   ++P+  V+D   AL+  A        AT++A+TG+ GKT+      +   
Sbjct: 72  DTARQALAGGTVPLLVVEDARLALSCAAALFFGAQPATMVAVTGTNGKTSVATFTRMIWQ 131

Query: 132 SIKKTYACIGSY----------NNHIGVPLTLARMPVDVDFGIF---ELGMSHLGEIRFL 178
           ++    A IG+           ++    P+TL R+  ++         +  S  G  +  
Sbjct: 132 ALGLDAANIGTTGVEGAFAAPSSHTTPEPITLHRLLAEMAAAGVTHAAMEASSHGLAQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL   +  +E   AKA +F  +       +   D     +  +
Sbjct: 192 LDGVMLKAAAFTNFTQDHLDYHATFDEYFDAKAGLFSRVLPEEGTAVINTDDPKGAVLVE 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 + +   G+    + QL+  +  +    +    QG    V    IG   A N+L 
Sbjct: 252 RARARGQKLIRVGQGDTCEIQLQGQRFDAAGQDVRFLWQGGPQMVRLPLIGGFQAMNVLT 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    A+     + L       GR +      N    T+  +  +   A      +
Sbjct: 312 AAGLVIACGAEPKAVFEVLPQLATVRGRMQLAATRTNGA--TVFVDYAHTPDA----VET 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            L  + PH  GR IA++G     G         L    +  +   V ++           
Sbjct: 366 ALRALRPHVLGRIIAIVGA----GGDRDRTKRPLMGAAAAAHADAVIVTDDNPRTEDPAL 421

Query: 414 LKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ A                   L    +L  GD +++  
Sbjct: 422 IRAAVMAGAGPEATEVGDRAEAILRGVDALGPGDALLIMG 461


>gi|55980069|ref|YP_143366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
 gi|55771482|dbj|BAD69923.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermus thermophilus HB8]
          Length = 482

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 153/485 (31%), Gaps = 70/485 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L            P+  V G+++DSR + P   F A+ G         DGHDF+
Sbjct: 1   MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
             A+ +GA  VV    +     +L +P   V D   AL  LA            ++ +TG
Sbjct: 57  PEALARGAVAVVGERPL-----ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMP 157
           S GK+TT  +L   L   +   A + +    +G                           
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +   + E+  SH   ++ +  L       +      HL      E    AKA + E  
Sbjct: 172 RGLKSAVLEV-SSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLVERS 230

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +                          +   SFG+    +      ++  E     +   
Sbjct: 231 DLAVLARSLPHFPRLAQ----------RPHLSFGE--GGEVYAEGLRETPEGLAFRLHTP 278

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S E     +G +  +N L        L   ++  ++ L+ F    GR       L   
Sbjct: 279 WGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGR---MEVVLKAP 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +ID ++             L  + P   GR + V+G     GE      +D+  V +
Sbjct: 336 FRVVIDFAHTGKSLEA-----ALKTLRPTTPGRLLLVVGAA---GERDPQRRVDIGRVAA 387

Query: 398 LYNISHVWL----SGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448
                  +      G  + A+ +A+ ++              +   L        GD V+
Sbjct: 388 RLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVL 447

Query: 449 V--KS 451
           +  K 
Sbjct: 448 LAGKG 452


>gi|116626356|ref|YP_828512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122251654|sp|Q01Q43|MURE_SOLUE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116229518|gb|ABJ88227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 494

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 89/477 (18%), Positives = 160/477 (33%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L +++        + Q  V G++ DSR + P   FFA  G   DG +F   A+ 
Sbjct: 1   MNLGEILSSVKLPRPLAPELAQTEVTGLAYDSRRVTPGVLFFAFPGSKADGREFAADALA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
           +GA  V+  +    +   L+     V+    AL   A     R      +  ITG+ GKT
Sbjct: 61  RGAVAVISES---LAPPDLAARWIQVEHGRHALALAARTFFGRPDERLGLTGITGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLARMPVDVDFGIFE----- 166
           TT  +    L +     A IG+   H            P +L  + +  D          
Sbjct: 118 TTAYLTDSVLRAAGGVTAMIGTIEYHLAGRVLKAVNTTPESLDLLQIFSDLLRAGGTHVT 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S         H +  H AV T +   HL     +E   +AK  +FEG       F  
Sbjct: 178 MEVSSHALALGRVHGLNFHTAVFTNLTRDHLDFHGDMERYFAAKQMLFEGAGGNPPRFAV 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +       + + HA   +    +G +  AD + R      +    ++Q + +   +   
Sbjct: 238 LNTDDEYSRRLRLHARTERLW--YGMTPEADLRPRHIVSSFKGLRFDLQFRKQRFTIESP 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L             +   + ++      GR   +        F ++ +  
Sbjct: 296 LIGKINVYNILAACATGFSYGLAPEVVARGIASLKAVPGR---FERVDEGQPFVVVVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + + A      +V++        R I + G     G         L    +      V L
Sbjct: 353 HTDDA----LRNVIAVARGLNPRRVITLFG----CGGDRDRAKRPLMGKAAAEASDFVVL 404

Query: 407 SGFHVLA------LKDAL---PRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +      + DAL    R+   H  E   +           +GD+V++  K 
Sbjct: 405 TSDNPRSEDPLTIMNDALVGIRRTDVAHVVEPDREAAIRRAIKEAREGDIVILAGKG 461


>gi|34762973|ref|ZP_00143951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256845498|ref|ZP_05550956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
 gi|27887361|gb|EAA24453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|256719057|gb|EEU32612.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_36A2]
          Length = 485

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               +GI  DSR I     F A +G + DGH++I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYDGIEYDSRKIKENYIFVAFEGANVDGHNYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               +DD+   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIDDIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMVEKLMGDIPITRIGTI 134

Query: 142 SYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V               +    +   +++ + E+    L   R    +V    A
Sbjct: 135 EYKIGDEVFEAVNTTPESLDLIKIFDKTLKKKIEYVVMEVSSHSLEIGRVE--VVDFDYA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD + + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDVNNSVINIDDEYGKRLYDEFIVDNSEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + +          +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIDGGDLEG------DYLDDGYIDIKYKKQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  N          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSTIKAAPGRFEALDCGQNYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   +       + L+  +            +K   
Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYFFEPDREKAIKLAINMAEKNDIILITG 449


>gi|46200206|ref|YP_005873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
 gi|46197834|gb|AAS82246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Thermus thermophilus HB27]
          Length = 482

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 92/485 (18%), Positives = 157/485 (32%), Gaps = 70/485 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L            P+  V G+++DSR + P   F A+ G         DGHDF+
Sbjct: 1   MPTLKELFALFG----KEAPEVPVRGLTLDSRRVEPGFVFVAVPGVPLPHRKPLDGHDFV 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
             A+ +GA  VV    +     +L +P   V D   AL  LA            ++ +TG
Sbjct: 57  PEALARGAVAVVGEKPL-----ALPVPYLQVADGRQALALLARRFHGEPDRKLLLVGVTG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMP 157
           S GK+TT  +L   L   +   A + +    +G                           
Sbjct: 112 SKGKSTTASLLHHLLKRAQGGSALLSTVGLRLGEEARPPVGHFTTPEAPEVYAFLREAAD 171

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +   + E+  SH   ++ +  L       +      HL      E    AKA +    
Sbjct: 172 RGLKSAVLEV-SSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTAEAYFRAKALLV--- 227

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           E++    L      F  L  K          SFG+    +      ++  E     +   
Sbjct: 228 ERSDLAVLARSLPHFPRLAQK-------PHLSFGE--GGEVYAEGLRETPEGLAFRLHTP 278

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S E     +G +  +N L        L   ++  ++ L+ F    GR       L   
Sbjct: 279 WGSGEAFLPLLGAYNLENALAASAAALALGVGLEAVLEGLATFPGVPGR---MEVVLKAP 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  +ID ++             L  + P   GR + V+G     GE      +D+  V +
Sbjct: 336 FRVVIDFAHTGKSLEA-----ALKTLRPTTPGRLLLVVGAA---GERDPQRRVDIGRVAA 387

Query: 398 LYNISHVWL----SGFHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448
                  +      G  + A+ +A+ ++              +   L        GD V+
Sbjct: 388 RLADKTFFTEEDHRGEDLFAILEAMAQAARAEGGVYELVPDREEAILKAILEARPGDTVL 447

Query: 449 V--KS 451
           +  K 
Sbjct: 448 LAGKG 452


>gi|227486191|ref|ZP_03916507.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235822|gb|EEI85837.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 476

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 158/473 (33%), Gaps = 52/473 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL++ I+   +       V  ++ +S  +     F A+KG  +DGH +I  A++K
Sbjct: 1   MIKLSDLVRKIEYLDVKHGADFKVRAVTNNSLKVGEGFIFVAVKGSIFDGHKYIDEAIKK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  VV   D+        I    V D    L +++         K ++I +TG+ GKTT
Sbjct: 61  GAKAVVHTEDVEYRE---DITYIRVFDPRQTLAEISNLITDFPSEKLSVIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------L 167
           T +++   +  +    A IG+   ++G            +  +   ++  + +      L
Sbjct: 118 TSKLIAYLIEKVFGPCANIGTDGANVGGEIIETSNTTPDITEINRILEKCVEKGIKYVTL 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G ++     VR  + +   ++  HL     ++    AK  +FE  E T     + 
Sbjct: 178 EASSHGLVQKRLAGVRFKVGIFNNLSTEHLDYHKTMDAYFKAKMILFENSEITIANIDDP 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  L          T  SFGK + A+ +     +  +        +   ++     
Sbjct: 238 WGKKAVEL--------FPTTLSFGKDEKANIRATDISKTDKGIS----FKIDGVDFFIRT 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I      N L  +  +  L A +    + ++ F     R +                 + 
Sbjct: 286 IADFELNNYLAAISTLKSLGASLTELSEVITDFPGVGSRFEYIENDKGLNIIVD----FA 341

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P + +     L       + ++IAV G     G+ +  F   + + +S Y I  +  +
Sbjct: 342 HTPRAFEEIFKSL-----PRDKKKIAVFGI---QGDRNPEFRNLIGKTVSDYGIYAIVTT 393

Query: 408 GFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   + + + I              +               GD V+   
Sbjct: 394 DDPKFDTYENISKDIVAGMAENYGAYTLIKDRKEAIEAGLRMAKPGDYVLFMG 446


>gi|295135638|ref|YP_003586314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
 gi|294983653|gb|ADF54118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zunongwangia profunda SM-A87]
          Length = 476

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/463 (14%), Positives = 149/463 (32%), Gaps = 45/463 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            S+       +  I  DSR +   + F AI G   +GHDFI  A+ +GA +++     + 
Sbjct: 2   ESVVGNTAVAIKNIHFDSRKVEMNDVFVAITGSVSNGHDFIEKAINQGALVIICEK--LP 59

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
           +     +    V +   AL  +A         K  ++ +TG+ GKTT   +L    +   
Sbjct: 60  NDIVNGVTYVQVANSKEALAYMAANFYENPSDKLKLVGVTGTNGKTTIATLLYDLFTKAG 119

Query: 135 KTYACIGSYNNHIGVPLT------------LARMPVDVDFGI--FELGMSHLGEIRFLTH 180
                + +    +G                   +    + G+    + +S  G  +  T 
Sbjct: 120 FKVGLLSTVKVMVGETFYDAERTTPDSLTINHYLAEMNEEGVEYCFMEVSSHGIDQHRTT 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     + T ++  HL   S   E    K   F+ L  +     N DD   E++   + 
Sbjct: 180 GLVFAGGIFTNLSHDHLDYHSSFAEYRDVKKRFFDELPASAFALTNVDDKNGEVMLQNTK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      Y++G    AD++ +  +       +++  Q     ++        + N    L
Sbjct: 240 A----KQYTYGLKNYADYKAQILENQFTGLLLKINDQEVWSRLI-------GSFNAYNIL 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I +         ++ L           R++  ++          Y   P ++K  +  +
Sbjct: 289 AIYAAAELLGLETLENLKFISELHSVNGRFQYFISPEEKITAIVDYAHTPDALKNVLDTI 348

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
           + I    E     V       G+  ++    +  + S  +   ++ S         A+ +
Sbjct: 349 NAIRTKNEELITVV----GCGGDRDRTKRPKMGHIASALSSKVIFTSDNPRTEDADAIIE 404

Query: 417 ALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
            + + +                            D++++  K 
Sbjct: 405 EIEKGVEPQNFNKTVSISNRKQAIKTACQMAQANDIILIAGKG 447


>gi|254475543|ref|ZP_05088929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
 gi|214029786|gb|EEB70621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. R11]
          Length = 494

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 139/459 (30%), Gaps = 34/459 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-- 73
           G +        + GI++DSR +     F A+ G    G  F   A+  GA  ++ +    
Sbjct: 13  GLTARGGVDPMICGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAILTDAAGA 72

Query: 74  --MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +   +   ++ +  V+D   AL   +         T++A+TG+ GKT+    +     
Sbjct: 73  QIVAELLRDSTVALVVVEDPRQALAYASALWFGAQPETMVAVTGTNGKTSVASFVRQIWI 132

Query: 132 SIKK-------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            +                   +                          +  S  G  +  
Sbjct: 133 ELGHKAVNLGTTGVEGAWSHPLNHTTPEPVTLHDALAQAAAAGVTHAAMEASSHGLDQRR 192

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      E   +AKA +F  +     + +   D         
Sbjct: 193 LDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPEDGVAVINMDDPRGPEMRA 252

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A   + + S G+    D  L   +  +    M      K  +   + IG   A+N+L+
Sbjct: 253 IAAARGQEVISVGR-GAGDLSLIGARFDASGQDMRFTWHDKPYQARLNLIGGFQAENILL 311

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D     + L       GR +      N      +D ++  +  +      
Sbjct: 312 ACGLVIASGEDPQAVFETLPHLQTVRGRMQLAATRDNGA-TVFVDYAHTPDAVAT----- 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            +  + PH  GR +A++G     G    +    L    +  N   V ++           
Sbjct: 366 AIKALRPHVLGRLVAIVGA----GGDRDAAKRPLMGQAAQENADLVIVTDDNPRSEDPAV 421

Query: 414 LKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ A+                 L    +L  GD +++  
Sbjct: 422 IRAAVKGGAPGALEVGDRAEAILRGVDALGAGDALLICG 460


>gi|239617758|ref|YP_002941080.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
 gi|239506589|gb|ACR80076.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kosmotoga olearia TBF
           19.5.1]
          Length = 497

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 91/508 (17%), Positives = 174/508 (34%), Gaps = 66/508 (12%)

Query: 5   WTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                L++ +  + +           VN +  +SR + P   F  ++G  +D H      
Sbjct: 1   MKLSHLIELLGNNLVEVTNLNGKDPEVNDVVSNSRLLKPGNLFICLQGTSFDSHLLAPEL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
            ++GA  ++    +      L IP+  V     A   L +        K T I +TG+ G
Sbjct: 61  QERGAAALIAEKKIDV---DLDIPIIYVKSSRLAEAHLYMEINDHPYKKLTTIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-----------------LTLARMPVDVD 161
           KTT   ++   L + ++  A +G+  N IG                        +  +++
Sbjct: 118 KTTVTTLINHILETFQRKSALVGTVKNVIGDYVSTNPKNTTPGPATLAKYMKMAVEKNLE 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+  S  G        +R  +AV+T +   HL   +  E+    K  IF  L+  G
Sbjct: 178 YFVMEV--SSHGLAMHRVDGMRFDVAVLTNVTRDHLDFHASFEDYYRTKLRIFNLLKPVG 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KS 280
              +N D+     +K     L    I ++G    +DF++   +      +  V+      
Sbjct: 236 KAVVNSDNVNIGDIK-----LPRDKIITYGFGNESDFRMENLEISRTGMYFTVETPFGSK 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V    +G H A N+  T+  +  L  D +  ++A+S F    GR +    A   GF  
Sbjct: 291 HKVYTRLVGEHNAYNVTATIATMESLNYDTEHILEAISTFSGVPGRFEFVEEATKYGFDV 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D ++  +         +L       EGR I V G     G  +      L   ++   
Sbjct: 351 LVDFAHTPDALE-----KLLKTAKKLSEGRIIIVFGA----GGDADKGKRPLMGEIASRF 401

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              V L+               ++  + ++                 +     D V++  
Sbjct: 402 ADVVILTSDDPKKEDPEEILNDIEAGISKTKPYLVIPDRREAISVALTLANRQDTVLIAG 461

Query: 452 SNS-----------CGFY--RLINLLLE 466
                           F   R++  +L+
Sbjct: 462 -RGHEDYQAFADYVVAFNDKRVVKEILD 488


>gi|193214544|ref|YP_001995743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088021|gb|ACF13296.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 501

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 87/483 (18%), Positives = 157/483 (32%), Gaps = 49/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+ +I+   I         V  I  DSR + P   F AI+G + DGH +I  AV+
Sbjct: 1   MRLKDLINSIELVEIAGELHEDTPVGSICFDSRKVGPNAVFVAIRGFNTDGHQYINQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
             A  +V     +    S       V D   AL K+A      +     +I +TG+ GKT
Sbjct: 61  ADAMAIVCEE--IPKSWSSHQLFLKVWDSREALAKIAKRFYENASDELKVIGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164
           TT  M+   L + +     IG+    IG                  L    +       +
Sbjct: 119 TTTGMIKCILDANEIKTGLIGTTGYIIGNQLYELDRTTPDALELHQLFHKMLEAGCRAVV 178

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S        T  +R  IAV T +   HL     +   A AK  +F+ L ++    
Sbjct: 179 MEV--SSHALALKRTAGIRFDIAVFTNLTHDHLDFHGSMTAYADAKKLLFDNLSESAFAV 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +N DD + E +     A  ++           ++   D   + +      +   +     
Sbjct: 237 INADDDYAEKMVKDCKANIVRCGVINAREKELENPIIDVMAKVFSYTINGTSAIIADDKN 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           SM      +G     N +           D    I+ L    P  GR ++     ++   
Sbjct: 297 SMMHQFRTLGKFNMYNTVEAYAAGLAFGFDRIHIIRGLMKCPPVRGRMQQVWSKDHRCAI 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y+  P +++ A+  +  + P                G         L   ++  
Sbjct: 357 VD----YSHTPDALENALQTICLVKPENGRIITLF-----GCGGDRDKEKRPLMGKIAED 407

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           N   + ++  +            ++  + +  + +     +       + L  GDV ++ 
Sbjct: 408 NSDIIIITSDNPRSEDPEKILDDIQAGIHKQNNFYRIVDRETAIRKAITLLTRGDVALIA 467

Query: 450 -KS 451
            K 
Sbjct: 468 GKG 470


>gi|168333722|ref|ZP_02691975.1| UDP-N-acetylmuramyl tripeptide synthase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 481

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 164/473 (34%), Gaps = 49/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L+ ++           ++ I  DSR       F AIKG   DGH ++ +A++ GA 
Sbjct: 3   LKKILENVEYELQQGDINRDISEIIYDSRIKTRCGLFIAIKGYMSDGHKYVSNAIENGAR 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
           ++VV+  +  +    +I V  V D    +  +A            ++ +TG+ GKT+T  
Sbjct: 63  VIVVSDAVFVA---ANIAVVRVKDTRAVMAAIAGNFYGHPSKELALVGVTGTNGKTSTTF 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELGMS 170
           +L   L + +K    IG+  N IG  +                 R     D  +  + +S
Sbjct: 120 LLAEILEAYRKKIGVIGTIENRIGKQVMETARTTPESIDLQKLFRKMNTEDVDVAIMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +          I V T +   HL     ++  A+AKA++F          +N D  
Sbjct: 180 SHALVLNRVDGCDFDIGVFTNLTQDHLDFHETMDNYAAAKAKLF---SMCKISIINVDSP 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + +++     A  I    ++G    A F  +     + ++   ++  GK +++V    G 
Sbjct: 237 YSKVMLDSCKAETI----TYGIKNPATFFAKDIVIHAHETQYVLEYNGKDLQIVVPIPGE 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N +  +     L   +D    AL       GR + ++             + +   
Sbjct: 293 FTVYNTMCAIICAYKLGVPLDFIAXALKNVKGVPGRVQSFQSTKGYSVLVDYAHTPDG-- 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
                  +VL+ I    +G  + V G     G    +    +   ++    + V+++   
Sbjct: 351 -----LENVLTAIKQFAKGDIVTVFG----CGGDRDNKKRPIMGEIASKYSTKVYITSDN 401

Query: 408 ------GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  ++    + I             +   S     DV+++  K 
Sbjct: 402 PRSEEPDEIIRQIEVGAKKHITPYEIESDRKTAIIKALSFAKKDDVILIAGKG 454


>gi|260910907|ref|ZP_05917549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634964|gb|EEX53012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 481

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 157/476 (32%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   +L+ ++  S+    +  + G+ IDSR +  +  F AIKG   DGH FI  AV +G
Sbjct: 1   MTLSSILKNVKPLSVVGNAEVEITGVDIDSRKVGEEHLFVAIKGTQVDGHTFIDKAVAQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  V+  T  + +     +    V+    A+  +A         K  ++ +TG+ GKTT 
Sbjct: 61  ATAVLCET--MPTQLPQGVTFVQVESTEDAVGPVATMFYGEPSKKLKLVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L              + + +Y     +P                  V+       + 
Sbjct: 119 ATLLYDMFRKFGHRCGLLSTVCNYIEDEAIPADHTTPDPIALNALLHRMVEAGCEYVFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +     V + +   HL      E   +AK   F+ L K      N D
Sbjct: 179 CSSHAIAQKRIGGLTFAGGVFSNLTRDHLDYHKTFENYRNAKKAFFDMLPKQAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     ADF+ +  +   E  ++E+      ++ +    
Sbjct: 239 DKNGMVMVQNTRAAVK----TYSTRSMADFKAKILECHFEGMYLEINGAEVGVQFIGKFN 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++       + +              L V         R +   +   +T I + Y  
Sbjct: 295 VSNLLAVYATAVMLGKRPEDI-------LLVMSTLHSVNGRLQPLSSPEGYTAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  ++ + ++  +G+G+ I V G     G         L  V ++     V ++ 
Sbjct: 347 TPDALENVLNAIHEV-LNGKGKVITVCGA----GGNRDKGKRPLMAVEAVKQSDRVIITS 401

Query: 409 -----FHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ +         +   V                   GDVV+V  K 
Sbjct: 402 DNPRFEDPQAIINDMLAGLNAQQMKKVISIVDRREAIRTACMMAQKGDVVLVAGKG 457


>gi|299142297|ref|ZP_07035430.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
 gi|298576386|gb|EFI48259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella oris C735]
          Length = 483

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 150/477 (31%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              ++LL+       IG      + G++IDSR I     F A+KG   DGH FI  A++ 
Sbjct: 1   MKLNELLKNITPIKIIGND-DVEITGVNIDSRRIKTGHLFVAMKGTQVDGHQFIGKAIEL 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  V+     +  +    I    V+    A+ K+A         K  ++ +TG+ GKTT
Sbjct: 60  GAISVLCED--LPKVLQEGITYVQVESTEDAVGKVATLFYGDPSHKLKLVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFEL 167
              +L              + + +Y + + VP                  V+       +
Sbjct: 118 IATLLYNMFRKFGHKVGLLSTVCNYIDDVEVPADHTTPDPIELNELLAKMVEAGCEYAFM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     ++    + T +   HL      E   +AK   F+ L K      N 
Sbjct: 178 ECSSHAIHQKRIGGLKFAGGLFTNLTRDHLDYHKTFENYRNAKKAFFDSLPKDAFAITNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T+ ++     ADF+ R  +   E  ++E+  +   ++ +   
Sbjct: 238 DDKNGMIMVQNTKA----TVKTYSIRTLADFRARILECHFEGMYLEIDGREVGVQFIGKF 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              ++       + +      DV   +  L   + +               +    ++  
Sbjct: 294 NVSNLLAVYGAAIMLGK-KPEDVLLVLSTLHSVNGRLEPIHSPEGFTAIVDYAHTPDALA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               ++   +         G+G  I V G     G         L    ++     V ++
Sbjct: 353 NVLNAIHEVLD--------GKGHVITVCGA----GGNRDKGKRPLMAQEAVRQSDKVIIT 400

Query: 408 GFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L       V                   GDVV+V  K 
Sbjct: 401 SDNPRFEEPQDIINDMLAGLNEQQMRKVISIVDRKEAIRTACMMAQKGDVVLVAGKG 457


>gi|225019359|ref|ZP_03708551.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
 gi|224947990|gb|EEG29199.1| hypothetical protein CLOSTMETH_03312 [Clostridium methylpentosum
           DSM 5476]
          Length = 479

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 155/475 (32%), Gaps = 52/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I+    G      +  +S DSR + P   F  IKG   DGHDF   A+ KG
Sbjct: 1   MKLSELLKDIEYT--GTYVDCDITDVSCDSRKLTPNSVFACIKGVQSDGHDFAQAALAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              ++   D+  +          V D   A  K+          K  ++ +TG+ GKTT 
Sbjct: 59  VPCILCERDLGLNN------QLLVQDTHFAFAKMCANFYGNPAKKLKLVGVTGTNGKTTV 112

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168
             ++   L+ +      IG+  N IG                 ++  D+     E   + 
Sbjct: 113 TSIIKRVLAGLGCKVGLIGTIQNEIGDQVIPTTKTTPDAGEFQKILSDMVEAGCEYVIIE 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +         +A  T +   HL     +E+   AKA++F          +  D
Sbjct: 173 VSSHALDQCRLADSHFEVAAFTNLTQDHLDYHKDMEDYFQAKAKLFH---MCDKGVICID 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           DS+   L  ++H           +  +A    R  +        E+        +     
Sbjct: 230 DSYGRRLALEAHCS---LRTFSAEDASASCFARNIEMDITGVRFEMVTGAVISRMQFGTP 286

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N L    +   L   +D+ +  ++          R         FT++ + Y  
Sbjct: 287 GLFSVRNALCAALVCLDLGISLDSVVGGINAC---GHIKGRSEIIPTGRDFTVLCD-YAH 342

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P  +   +S +++    G+GR +AV G     G         +   +   N   + ++ 
Sbjct: 343 TPDGLVNILSSINEY--KGKGRAVAVFG----CGGDRDRKKRPIMGEVVARNADLLIVTS 396

Query: 409 -----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D +     P                +       GD++++  K 
Sbjct: 397 DNPRTEDPDAIIDEIVAGIEPTGTPFLRITNRREAIHYAVQHAQPGDIILLAGKG 451


>gi|196247739|ref|ZP_03146441.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
 gi|196212523|gb|EDY07280.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacillus sp. G11MC16]
          Length = 489

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 150/477 (31%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR + P   FF +KG   DGHDF   AV++G
Sbjct: 1   MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +  ++  + +      D   A+  LA A   +   +  +I +TG+ GKTTT
Sbjct: 61  AVAIVAERPLSVNVPVVVV-----PDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++        K    IG+    IG               +       + E      + 
Sbjct: 116 THIIEQVARKAGKKTGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +      +    I ++G  + +D    + +        ++     +M +   
Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L            + T  +AL+   P  GR   +        FT+I +  
Sbjct: 296 LVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGR---FETVDEGQNFTVIVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   +      + L  +    +     V+G     G         L    ++        
Sbjct: 353 HTPDS----VENALKTVRQFAKRNVYVVIG----CGGDRDRTKRPLMAQAAVRYADVAVF 404

Query: 407 SGFHV---------LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  +      +      +    +      +GDVV++  K 
Sbjct: 405 TSDNPRSEDPRQILRDMEAGVSAGEGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461


>gi|119944898|ref|YP_942578.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychromonas ingrahamii
           37]
 gi|119863502|gb|ABM02979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas ingrahamii 37]
          Length = 509

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 146/461 (31%), Gaps = 40/461 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-- 79
            P   V+G+++DSR I     F A++G  +DG  FI  +++ GA  V+  T   +  G  
Sbjct: 22  DPSIRVSGLTLDSRQICRGYLFIALQGAQHDGRLFIEKSLKMGACAVLSETKNRSEHGQV 81

Query: 80  --SLSIPVFGVDDVLGALNKLA-VAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSI-K 134
                +PVF V      L+ LA      + K   +IA+TG+ GKTT   +L  +   + K
Sbjct: 82  TIKSGVPVFAVYKPAAILSALAYRFFFRKIKLHKVIAVTGTNGKTTIASLLADSFMLLGK 141

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHL 181
           ++       N   G   +     +D      E             + +S  G  +     
Sbjct: 142 QSAQMGTIGNGLFGQLKSSLNTTLDAISVFSELHCYQQQRAEYTIMEVSSHGLDQGRVSA 201

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V    A+ T +   HL     +E    AK  +FE       I    D    + L     A
Sbjct: 202 VPFFSAIFTNLTRDHLDYHGSMENYHLAKKSLFEKYPLKQRIINADDPIGAQWLTDFPDA 261

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +           K +  ++      ++              V     G     N+   L 
Sbjct: 262 ISYGFNAKALTDKQSYLRVTDVDYHAQGVTFAFHSSWGKGVVSAPFYGDFNVSNLAAVLT 321

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + +    ++             GR ++Y  A     F +    Y   P +++  +  L 
Sbjct: 322 QLLVENVSIEHVQTIFPKLSTVPGRMEQYYFAEKNITFVVD---YAHTPDALEKVLLALQ 378

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
                  GR I V G     G    +        ++      V L   +           
Sbjct: 379 --KHKSSGRLICVFG----CGGDRDTGKRPQMANIAESYAQKVVLVDDNPRTENAQSIIE 432

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +     R   V           F+ +S    D+V++  K 
Sbjct: 433 DILQGFARPDRVEVIHDRRQAVNFLLNSAQSDDIVLLAGKG 473


>gi|238784573|ref|ZP_04628580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
 gi|238714539|gb|EEQ06544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia bercovieri ATCC 43970]
          Length = 471

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 140/454 (30%), Gaps = 45/454 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   +V   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVAEIHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ + +       
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTSQLLAQWSQALGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +     A   +     ++    +N DD       ++       ++   
Sbjct: 182 NLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMEGH 240

Query: 251 GKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             +          + +     + +         ++    +G     N+L+ L  +  L  
Sbjct: 241 LPAGWKGPWLSASQVEYHDNGANITFGSSWGEGQIESRLMGAFNVSNLLVALSTLLSLGY 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   + A     P  GR + +              + +A           L+    H +
Sbjct: 301 PLAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCK 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419
           G+   V G     G         L   ++      V ++  +            +   L 
Sbjct: 354 GQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLL 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + H                   + DVV++  K 
Sbjct: 410 DAGHALAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443


>gi|325980950|ref|YP_004293352.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
 gi|325530469|gb|ADZ25190.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas sp. AL212]
          Length = 508

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/456 (15%), Positives = 144/456 (31%), Gaps = 32/456 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  +  DSR I P + F A  G   DG+ FI  A+  GA  V+ +           IP
Sbjct: 21  VEIKNLVADSRQIKPGDTFLAYPGDTTDGNKFIPQAIAAGANAVLYDPRNFVWKSEWRIP 80

Query: 85  VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTY----- 137
              VDD+      +A            ++ ITG+ GKT+       A+ ++         
Sbjct: 81  ALAVDDLKMKAGLIASYVYDHPSQKLWVVGITGTNGKTSCSHWYAQAMVNLGYKTAVLGT 140

Query: 138 ---ACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAV 188
                I +             +       + E      + +S  G  +  T      +A+
Sbjct: 141 LGSGYIENLQGTENTTPDATVLQRSFKKFVDEGAKNVVMEVSSHGLAQGRTMGTAFSVAL 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T ++  HL     ++  A+AK+ +F        +    D    EL +           Y
Sbjct: 201 LTNLSRDHLDYHQDMDAYAAAKSSLFFWPGLKYAVVNMDDVLGVELSRQLVTKPIKMMGY 260

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            F   +N D +  K    S   +    ++        H               +++++ A
Sbjct: 261 GFRYPENRDSKQFKMVHGSNLKFDIHGMEFDIEFEDSHEHLRIGLLGKFNASNLLAVVAA 320

Query: 309 DVDTAIK---ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            + + I+   A+      +    R          T+I + Y   P +++  +  L ++  
Sbjct: 321 LLASGIRLPDAVGSLQSVQSIPGRMEKYYGINQSTIIVD-YAHTPDALEKVLCTLRELLR 379

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
                       +   G         +   ++      V  +  +  +      ++D   
Sbjct: 380 IEGRNARLFC--VVGCGGDRDRGKRAMVGEVATRLADEVIFTSDNPRSEDPLRIIEDIAA 437

Query: 420 RSIHVHYSETMDGLFL--FIQSSLVDGDVVVV--KS 451
            ++  +Y   +D         ++    D+V++  K 
Sbjct: 438 GAVEGNYQVEVDRALAIYQAIANARSNDIVLIAGKG 473


>gi|34499803|ref|NP_904018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|46576920|sp|Q7NPZ4|MURE_CHRVO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34105653|gb|AAQ62007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 493

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 156/454 (34%), Gaps = 39/454 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSI 83
             +  +  DSR + P + F A +G + DG DFI  A++KGA  V+ +  D  A       
Sbjct: 21  LPIKRVEADSRRVLPGDVFLACRGEYADGRDFIPAALEKGAAAVLWDEADGFAWKAEWQA 80

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK------ 135
           P   V ++      +A           T++ ITG+ GKT+    L  A S + +      
Sbjct: 81  PNLAVPNLRERAGIVAAHVLGLPSRDLTVVGITGTNGKTSISHWLAQAFSLLGQKAALIG 140

Query: 136 ---TYACIGSYNNHIGVPLTLARMPVDVDF-----GIFELGMSHLGEIRFLTHLVRPHIA 187
                            P  +       ++      +  + +S  G  +F  + V    A
Sbjct: 141 TVGNGFYGHLTETTHTTPDPVTVQQKLAEYRRQGAHVVTMEVSSHGLDQFRVNGVEFATA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +E    +K ++F          +   D  F    A         +
Sbjct: 201 VFTNLTRDHLDYHGSMEAYGESKKKLFFWEG--LKHAVINADDAFGRQLAAGIDPKQTRV 258

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G  +  D +        E   + V     +++V    +G   A N+L  L  + +  
Sbjct: 259 VTYGL-EQGDVRPLALAATLEGLQLTVATPWGTVDVRTGLVGRFNAANLLACLATLCVNG 317

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +     A +V    +    R +         ++ + Y   P +++ A++ LS+I P  
Sbjct: 318 VSLQD---AAAVMARIQPARGRMQSVGGAHEPLVVID-YAHTPDALEKALATLSEIRP-A 372

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP-- 419
            GR   V G     G         +   ++  +     L+  +  +      ++D L   
Sbjct: 373 GGRLFCVFG----CGGDRDPGKRPMMGAIAEKHADVAVLTSDNPRSEDPQAIIRDVLAGM 428

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   H     +    +  +    GDVV+V  K 
Sbjct: 429 DAARAHVEADREAAIHWAVAQARVGDVVLVAGKG 462


>gi|254451496|ref|ZP_05064933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
 gi|198265902|gb|EDY90172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Octadecabacter antarcticus 238]
          Length = 503

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/472 (17%), Positives = 146/472 (30%), Gaps = 42/472 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+   + G      + G+S+DSR +     FFA+ G    G D I +A++ GA  ++ 
Sbjct: 12  LAALGLRAKGGR-DATITGLSVDSRDVKEGTLFFALPGTKVHGADVIQYALRMGAAAILT 70

Query: 71  NTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +          +   S  +   +D  GAL   A         T+IA+TG+ GKT+     
Sbjct: 71  DAQGAQIAAKELADSSAALIIAEDPRGALALTASLWFGAHPETMIAVTGTNGKTSVSTFA 130

Query: 127 TIALSSIK-------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
                 ++                  +                          +  S  G
Sbjct: 131 RQIWIEMELAAVNLGTTGVEGAWTYPLKHTTPEPITLHRTLAQAKSHGITHVAMEASSHG 190

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             +     V    A  T     HL      E    AK  +F  L     + +   D    
Sbjct: 191 LDQRRLDGVVLAAAGFTNFTQDHLDYHKTFEAYFDAKMGLFTRLLPEDGVAVINIDDSKG 250

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               +          + G+  +A  +L   +  S    +    Q  S     + IG   A
Sbjct: 251 PEVVQIAESRGLETITVGRHPDARLKLTGQRFDSTGQEILFDWQRGSHSARLNLIGGFQA 310

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L+   +V     D + A   L       GR +      N G    +D ++  +  + 
Sbjct: 311 DNVLLAAALVIAAGGDPEEAFDTLPYLTTVRGRMQHAATRRN-GGSVFVDYAHTPDAVAT 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
                 L  + PH  G+ IA++G     G    +    L    ++ N   V+++  +   
Sbjct: 370 -----ALMAMRPHVMGKLIAIVGA----GGDRDTGKRPLMGQAAVQNADMVFVTDDNPRS 420

Query: 411 -------VLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +  AL       V          L    +L  GD +++  K 
Sbjct: 421 EDPRVIRAAVMAGALENAAGKSVIEVGDRAEAILRGIDALGPGDALLIAGKG 472


>gi|150009090|ref|YP_001303833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parabacteroides distasonis ATCC 8503]
 gi|166224782|sp|A6LEU7|MURE_PARD8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|149937514|gb|ABR44211.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Parabacteroides distasonis
           ATCC 8503]
          Length = 486

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 148/474 (31%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+ A++   +       +  I  DSR +     F A++G   DGH ++  A++KGA 
Sbjct: 3   LRDLIGALEAPMLMGADNVDITNIQSDSRRVTKGSLFVAVRGTAVDGHAYMDSAIEKGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            +V       S          V D   AL  L          K  ++ +TG+ GKTT   
Sbjct: 63  AIVCEE--TPSYLEGRCSFIVVKDSAEALGLLVSRWYGDPSRKLMLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSI---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +L      +            Y    +       P      +L    V+       + +S
Sbjct: 121 LLYEMFRKMGHKVGLLSTVCNYIDGEAVPTDHTTPDPLTLHSLMARMVEAGCEYAFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T +   HL     +E    AK + F+ L        N DD 
Sbjct: 181 SHSIDQRRISGLSFDGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPAGTFALTNADDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A  +    ++     ADF+ +  +   E + + +  +        H +G 
Sbjct: 241 SGLVMLQNTKAKKL----TYSLRTLADFKGKILESHFEGTDLIINGREVM----VHFVGR 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G    L  D +  +  LS      GR +  +  L          + +A  
Sbjct: 293 FNAYNLLAVYGAAVSLGKDPEEVLIVLSTLRSVSGRFETIQSPLGYTAIVDYAHTPDALT 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             +     VL      G+GR I V+G     G         L    ++     V L+  +
Sbjct: 353 NVLNGIHEVLD-----GKGRIITVVGA----GGNRDKGKRPLMAKEAVKLSDQVILTSDN 403

Query: 411 VL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +                         GDV++V  K 
Sbjct: 404 PRFEEPDDIINDMVAGLTKMDMERTLCITDRTQAIKTATMLAKKGDVILVAGKG 457


>gi|84686330|ref|ZP_01014224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665513|gb|EAQ11989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2654]
          Length = 495

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 157/476 (32%), Gaps = 38/476 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T    L A+   + G      + G+S+DSR++ P   F A+ G    G +FI +A
Sbjct: 1   MAPQKTLP--LSALGLRAKGG-QDVEITGLSVDSRTVKPGHLFAALPGSKLHGGEFIQYA 57

Query: 61  VQKGAGLVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++  A  ++ + +        + +    +   +D   AL   A          ++A+TG+
Sbjct: 58  LRMEAAAILTDREGARIAADELAASKTALIVTEDPRAALAYAAALWFGAQPEVMVAVTGT 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF- 165
            GKT+         + +    A IG+                 P+TL R+  ++      
Sbjct: 118 NGKTSVASFTRQIWTELGLMAANIGTTGVEGAFAAPSPHTTPEPITLHRLLAEMSQAGVT 177

Query: 166 --ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S  G  +     V    A  T     HL   +  ++   AKA +F  +     +
Sbjct: 178 HAAMEASSHGLDQRRLEGVHLAAAGFTNFTQDHLDYHASFDDYFRAKARLFNRVLPDDGV 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D        +      + + S G++++   QL   +       +     G+   V
Sbjct: 238 AVLNVDDPRGRELEEIAQERGQEVISIGRTEDCTLQLTSQRYHMTGQQIRFLYNGRPQTV 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A+N+L+  G+    +      + A            +     + G    +D
Sbjct: 298 QLDLIGGFQAENVLVAAGLAIA-SGSDPDEVFATFPALTTVRGRMQLAAKRDNGAAIFVD 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +  +       L  + PH  G+ + V G     G    +    L    +      
Sbjct: 357 YAHTPDALAT-----ALEALRPHVMGKLVVVFGA----GGDRDTTKRKLMGKAAADYADV 407

Query: 404 VWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++          A++  +       +         L     L  GD +++  K 
Sbjct: 408 VIVTDDNPRTEDPAAIRAMVLEGCPDANEYGDRAEAILRGVDMLDPGDALLIAGKG 463


>gi|154252858|ref|YP_001413682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156808|gb|ABS64025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parvibaculum
           lavamentivorans DS-1]
          Length = 482

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 155/459 (33%), Gaps = 36/459 (7%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G ++       + G++ DSR++ P   F A+ G   DG  FI  A++KGA  ++V    
Sbjct: 7   SGPALPEGGATEILGLTADSRAVRPGYLFAALPGTKLDGTKFIAQAIEKGAAALLV---P 63

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +  + ++PV    +    L  +A A       T+ A+TG+ GKT+    L    +++ 
Sbjct: 64  LDAAVAANVPVIADRNPRRRLALMAAAFFGDQPRTVAAVTGTNGKTSIATFLREIWAALG 123

Query: 135 KT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTH 180
           +                              A +      G+    +  S  G  ++   
Sbjct: 124 EEAASLGTLGVTSAKGERSLGYTTPDPVALQAELAALAKEGVTHLAMEASSHGLAQYRLD 183

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V+   A  T I   H+   +  ++   AK  +F  +   G I +   DS          
Sbjct: 184 GVKLRAAGFTNITRDHMDYHTSFDDYLYAKLRLFGEVMGPGGIAVLNADSAQYAEFEAVC 243

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 I S G+ K     L   +       +E+  +GK+  V    +G   A N L+  
Sbjct: 244 WARGHRIISVGR-KGKGIFLAAARPTPRGQTLELVHEGKNYAVNLPLVGGFQASNALVAA 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+        +    AL      +GR +      N      ID ++  +        + L
Sbjct: 303 GLAIGCGGAAEKVFAALEKLTGAKGRMEEAAHLPNGA-SVYIDYAHTPDALE-----NAL 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
             I PH  GR   V G     G    +    L    +      ++++          A++
Sbjct: 357 EAIRPHTAGRLSIVFG----CGGDRDAGKRPLMGAAAAKLADIIYVTDDNPRSEAADAIR 412

Query: 416 DALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
            A+ +                    +L  GDV+VV  K 
Sbjct: 413 AAVLKGCPGAIEIGDRAAAIETAMRALQPGDVLVVAGKG 451


>gi|259047016|ref|ZP_05737417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
 gi|259036335|gb|EEW37590.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Granulicatella adiacens ATCC 49175]
          Length = 497

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 158/476 (33%), Gaps = 43/476 (9%)

Query: 7   FHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +L   +    + G +    V+ ++ DSR + P   FF I+G   DGH F   A + GA
Sbjct: 3   AKELADLLVIKRVEGSLENIVVDKLAQDSRKVVPNTMFFCIEGVTVDGHLFAGKAKELGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
            + V +  +   +G    PV  V DV   +   A            +I +TG+ GKTT  
Sbjct: 63  NVFVASKPIKEQVGDS--PVIYVKDVTRVMTLFANHFYGYPSENLNMIGVTGTNGKTTVT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGM 169
            M+   L  + K  A IG+    IG      R        + E              + +
Sbjct: 121 HMVDYLLEELGKPTALIGTMYRKIGEERIETRNTTPEILTVHETLQKVKEIGGDTCIMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNY 227
           S           +  ++AV T +   HL     +E  A AK+      G           
Sbjct: 181 SSHALQLGRVWGIDYNVAVFTNLTHEHLDLHKTMENYAHAKSLLFSQLGNHSKNEKPRVA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  +    +        I S+G S+ AD +  + +     +   V + G+ + V+   
Sbjct: 241 ILNRDQEYFGQFAYSTSAEIISYGFSEEADIRATEIESNGAMTTFVVTVNGEKIPVMVPM 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L   G+  +    +  AI+ ++ F    GR +  +              + 
Sbjct: 301 IGLFNVYNVLAAFGVAMVNGIPLRKAIEKIAKFPGVGGRMQLIQKGQPFQVIID----FA 356

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  ++  +S L ++  +       V+  M   G    S        ++     +V L+
Sbjct: 357 HTPDGLENVLSTLEEVKINR------VITIMGHSGGNRDSSMRPELGEIAFEKSDYVILT 410

Query: 408 GFHVL-----ALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +        +   +       +      +              +GD+++   K 
Sbjct: 411 ADNPRQESLEKIYSEIVSGRKNENTPYECVDDRKQAIERALELAQEGDILLFAGKG 466


>gi|254460608|ref|ZP_05074024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacterales bacterium HTCC2083]
 gi|206677197|gb|EDZ41684.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 487

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/461 (16%), Positives = 142/461 (30%), Gaps = 35/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---- 71
           G +        + GI++DSR +     F A+ G    G +FI +A++  AG ++ +    
Sbjct: 5   GLTAAEGRNPAITGIAVDSREVQAGFLFAALPGSKVHGGEFIQYALRMDAGAILTDAVGA 64

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 + +    +   DD   AL   +          + A+TG+ GKT+    +    +
Sbjct: 65  EIAADELANSDAAIIVTDDPRSALAFASALYFGAQPQIMTAVTGTNGKTSVSTFVRQIWN 124

Query: 132 ----SIKKTYACIGSYNNHIGVPLTLARMPVDVD---FGIFE------LGMSHLGEIRFL 178
                           + H+ +  T              + E      +  S  G  +  
Sbjct: 125 LLDLEAVNLGTTGVEGSLHLPLAHTTPEPITLHRTLATLVHEGISHAAMEASSHGLDQRR 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      E    AK  +F  + +   + +   D       A 
Sbjct: 185 LDGVNLAAAGFTNFTQDHLDYHGTFEAYFDAKMGLFTRVLQDDGVAVVNLDDPKGAEVAM 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   +   G+   AD  L   +      ++  +   +  +   + IG   A+N+L+
Sbjct: 245 IAQAHGHELIGVGRDPEADLCLLGQRYDGTGQYLLFKWHDRPFQARLNLIGGFQAENVLL 304

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D       L       GR +      N      +D ++  +         
Sbjct: 305 AAGLVIACGEDPARVFDTLGDLETVHGRMQLAATRTNGA-AVFVDYAHTPDAVET----- 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  + PH  GR +A++G     G         L    +  N   V+++  +  +     
Sbjct: 359 ALKAMRPHVMGRLVALIGA----GGDRDRGKRPLMGQAATENADLVFVTDDNPRSEDPAL 414

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  +             L    +L  GD +++  K 
Sbjct: 415 IRAAVMGGAPEAIEVADRAEAILRAVDALGPGDALLIAGKG 455


>gi|148980583|ref|ZP_01816130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145961166|gb|EDK26482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 494

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 80/460 (17%), Positives = 151/460 (32%), Gaps = 42/460 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV         GS
Sbjct: 21  ELASIAVEQLELDSRAIKDGDIFVAIVGHAVDGRRFIDKAVAQGAKAVVAQASDDKVHGS 80

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131
           +    ++PV  V ++   L++LA          +I +TG+ GKTT  +++   L      
Sbjct: 81  VEWLDAVPVIYVSELNVILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPV---DVDFGIFELGMSHLGEIRFLTHLV 182
                 +       + +  N  G  + + R      + +     + +S LG ++     +
Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEDNAVYTAMEISSLGLVQGRVKAL 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T ++  HL     +EE A AK  +F   +    +    D+     +   S+A+
Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWMVDLSNAV 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  +   G                    +         ++    IG   A N+L+    
Sbjct: 261 AVSLLPLSG--YQQSVWTSDVAYAETGIKLAFDGSWGQGQLSVPLIGQFNASNVLVAFAT 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D  T I       P  GR + ++             + +A           L+ 
Sbjct: 319 LLSLGIDKQTLIDTAPQLQPVIGRMELFQVPNKAKVVVDYAHTPDA-------LEKALAA 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H  G+  A+ G     G    +    +  V +      + +S  +            
Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L                 F      + D++++  K 
Sbjct: 428 MLAGLSEPEAAFVEHDRYQAVKFALEQAGNNDIILLAGKG 467


>gi|260169108|ref|ZP_05755919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 488

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAIEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 455


>gi|254292764|ref|YP_003058787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
 gi|254041295|gb|ACT58090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hirschia baltica ATCC
           49814]
          Length = 483

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 37/459 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P     G++ DSR +AP   F A+ G   DG DFI  A+  GA  V+ +     
Sbjct: 5   QIFDNAPDWEFTGLTCDSRKVAPGFVFAALLGTVSDGRDFIQAAIDNGAIAVLTDER--- 61

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
             G   IP   V +   A  K A A   +    ++A+TG+ GK++T + L    + +   
Sbjct: 62  -DGEWEIPAIKVAEPRLAFAKAAAAFYHKQPEVMVAVTGTNGKSSTVDFLRQIWTELGHV 120

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
            A +G+       P     +       +                  +  S  G  ++  H
Sbjct: 121 SASVGTLGAVG--PSGAVELGHTTPDPVAVQSTLAILANEGVTHCAMEASSHGLAQYRMH 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V+        ++  HL      E+  +AK ++F  L   G   +   DS  +       
Sbjct: 179 GVQLAAGGFLNLSQDHLDYHKDFEDYFAAKMKLFSELLPEGAPAIINADSDMKDKALAIA 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  ++ G   +  +      + + Q         +  +     +        L  L
Sbjct: 239 TAANLKPFTVGWRGDHLWIDEISPRNTGQKLQLQWETPEGDKETIVNLPLIGEFQALNAL 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               I  +     +   +     +G   R            I   +   P  +   +   
Sbjct: 299 AAAGIALSLGADPMAVFAAMEKLKGVKGRLELVAETQNGAGIFVDFAHTPDGLDTLLRAA 358

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
               PH  GR I V G     G    +    +   ++      V ++          +++
Sbjct: 359 ---RPHAAGRVICVFG----CGGDRDAGKRPIMGEIAAKYADEVIVTDDNPRSEDPASIR 411

Query: 416 DAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A+   + +    +  +       S L  GDV+++  K 
Sbjct: 412 AAIMAGAPNATEIDGREAAIKEGISRLKKGDVLMIAGKG 450


>gi|225627887|ref|ZP_03785923.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261758615|ref|ZP_06002324.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
 gi|225617050|gb|EEH14096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella ceti str. Cudo]
 gi|261738599|gb|EEY26595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brucella sp. F5/99]
          Length = 499

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 157/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 10  MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAVFAADA 66

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  +V   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 67  VKRGAVAIVAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 125 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 185 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 245 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 303

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 304 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 363 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 413

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 414 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDKLVVAGKG 466


>gi|88858797|ref|ZP_01133438.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
 gi|88819023|gb|EAR28837.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Pseudoalteromonas tunicata D2]
          Length = 489

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 141/474 (29%), Gaps = 46/474 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL   +            V  + +DSR I   +AF AIKG   DG  F+  A+  GA +
Sbjct: 3   ADLAPIL-ARFAISHESIDVQHLVLDSRKIKTGDAFIAIKGHSQDGGLFVESALANGAAI 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEM 125
            +V+     +  S  I    V  +   L +L+     +      +I +TG+ GK+T   M
Sbjct: 62  ALVDEQCECTFASDKI--IRVAQLDKKLAQLSAQFYGKPSEELALIGVTGTNGKSTITSM 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD----------------FGIFELGM 169
           +     +               G P  L  +                       +  + +
Sbjct: 120 IA--YLAQVCGSKSAVIGTLGWGHPDKLNALANTTPSSVELQAILGQLHQASHQVVAMEV 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G ++      R   AV + ++  HL     ++  A AK  +F       ++    D+
Sbjct: 178 SSHGLVQGRVACTRFKAAVFSNLSRDHLDYHGDMQSYADAKLMLFTECNPEISVINQDDE 237

Query: 230 -SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +   L++ +     +                   +   +    +      + E+     
Sbjct: 238 VAKLWLMQPELMDAVVYGQGKTTTHTGRYVLFDDVQYSGDGLSAQFYTSWGNTEIKCPLY 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+      +  L   +D   +A+S   P  GR + +  A           + +A
Sbjct: 298 GQFNLYNLAAAFATLLALGYSIDLLAQAVSKLSPVAGRMQPFSEANKPTCVVDYAHTPDA 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  +  H  G+   V G     G         L    +    + + ++ 
Sbjct: 358 LAL-------ALQALQLHVPGKVTCVFG----CGGNRDKGKRALMAQAAERFANKIIVTS 406

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +      + HV   E  +             +V+++  K 
Sbjct: 407 DNPRNEDPKAIIADILAGFNDTTHVLSEEDREQAIKMAIEQAEPEEVILIAGKG 460


>gi|94987541|ref|YP_595474.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224781|sp|Q1MPC4|MURE_LAWIP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94731790|emb|CAJ55153.1| UDP-N-acetylmuramyl tripeptide synthase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 482

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 82/449 (18%), Positives = 135/449 (30%), Gaps = 40/449 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I IDSR +     F A+ G   DG  FI  AV +GA  +V   + V   GS  IP   VD
Sbjct: 20  ICIDSRKVEKGCVFVALPGSSVDGGLFIPDAVSRGAAYIVCRHNEVEYCGSA-IP-IVVD 77

Query: 90  DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKK---------TYA 138
           D    L +LA            II +TG+ GKTT   +L     +               
Sbjct: 78  DPRYTLGRLARIFYNTGNLSMPIIGVTGTNGKTTITYLLEYLFRAKGNRTGVIGTIAYRW 137

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAVITTIA 193
              S    +  P  L    +     +       + +S     +     +     + T + 
Sbjct: 138 PGFSKEAPLTTPQCLDLHAMLAQMQVDKTEIVFMEVSSHALDQRRIAGISFKGVIFTNLT 197

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     ++E   AKA +F        I +   D+ +    AK     I   +    +
Sbjct: 198 QDHLDYHKDMKEYFHAKARLFFEYPSKNKIMVASMDNQWGRKLAKLVPEIIGFGFKNKPT 257

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           + +++   K    S             +  +   +        L+ +  +S+        
Sbjct: 258 QVSNYLFGKILSSSRAGLHLQMSFKDKVWELCTPLVGVHNAENLLAVQAISLQLGLAPED 317

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                 F    GR +R         F     + +A        I+VLS +   G  R I 
Sbjct: 318 FCCFEKFTGVPGRLERIVNKKQLDIFVDYAHTPDA-------LINVLSALRDVGFKRIIT 370

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHV 424
           V G     G         L             L+  +         + D    L ++  +
Sbjct: 371 VFG----CGGNRDKAKRPLMGKAVAKLSDVAVLTSDNPRNEDPELIMADVLPGLKKAKQI 426

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +         +  GD ++V  K 
Sbjct: 427 ITEPDREKAIRQAIELVSPGDALLVAGKG 455


>gi|291166633|gb|EFE28679.1| UDP-N-acetylmuramyl-tripeptide synthetase [Filifactor alocis ATCC
           35896]
          Length = 510

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 88/494 (17%), Positives = 161/494 (32%), Gaps = 41/494 (8%)

Query: 5   WTFHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                LLQ +       +     ++ ++  S  +     F  IKG   DGH ++  AV+ 
Sbjct: 1   MKLSKLLQNVSVIEYKNVDMDLEISSLAYHSAKVEQNGLFVCIKGYKADGHKYLASAVEH 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
            A + VV T        + IP   V+D   AL  ++         K T+I IT + GKTT
Sbjct: 61  NAIVAVVET-----FQDIDIPQVKVEDSRIALATMSSNYYDNPSKKMTVIGITATNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHI---------GVPLT---LARMPVDVDFGIFELGM 169
           T  M+   L   KK    IG+                P +      M + V+ G+  L M
Sbjct: 116 TAFMVDEVLRKAKKKTGIIGTVMIRSLNEVIPSVLTTPESLDLQKYMAMMVEQGVTHLTM 175

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S         H V         I+  H+      E+    K+ +  G++ +    +N 
Sbjct: 176 EVSSSALELHRVHGVDFDFVCFNNISRDHIDLHGSFEDYFQIKSTLIRGMKPSAKAVINA 235

Query: 228 DDSFFELLKAKSHAL------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           DDS    L  +                 +    +    +  WK     +   + L    +
Sbjct: 236 DDSLLHDLIQEKQNQVITYSVESNRGDLYCTQLDLSTGIANWKIVPNPTKSTLSLLNSEV 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++     GYH   N +  + +  +   D+DT    L  F   E R +       +     
Sbjct: 296 KIALSVPGYHSVYNAMAAMELCLLCQIDIDTIQDGLHSFKGVERRFELIYDKEFKIIDDH 355

Query: 342 IDESYNA--NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + N      ++K              G R  V+         S   ++ L   ++  
Sbjct: 356 FANTGNIRVTLETLKKMKYEQLHFIYAIRGSRGVVVNRENAEEICSGIENLPLKTFVATK 415

Query: 400 NISHVW----LSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++ HV     ++   +   +D +      V   + ++    F+   +  GDV+++     
Sbjct: 416 SVHHVTEKDKVTQEEITVFQDIMNCCERTVPIYDDLEEAIAFVLKEVQPGDVILLAGCQG 475

Query: 455 CG------FYRLIN 462
                     +L +
Sbjct: 476 MDSGGKLLLEKLAD 489


>gi|126650751|ref|ZP_01722967.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
 gi|126592416|gb|EAZ86434.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Bacillus sp.
           B14905]
          Length = 462

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 103/412 (25%), Positives = 167/412 (40%), Gaps = 17/412 (4%)

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KG  LV+ +        +L    V  V  V  A        R   +  ++A+TG+ GKT
Sbjct: 59  RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFQIPVVALTGTCGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML    S   +  A + S N        L  +       IFELG+ + G I+    
Sbjct: 119 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +IT I   HL     +E    AKAEI EG+   GT+ +N DD+  E +  +  
Sbjct: 179 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLLINADDANIEKISLQKF 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I     FG   +AD++    +         +++      V   G G H   N L  +
Sbjct: 239 KGKIIR---FGLQDSADYKASAIEFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              S +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ VL
Sbjct: 296 AACSEMGLSIRQAIAGLRTFK---QMARHLEFTKGIGDSTIIDDTWTNNPTSVEAALKVL 352

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +   I VLGD+  +G   + +H ++   ++   I  +   G    A+ D   +
Sbjct: 353 DTVGKEKK--VILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 410

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---SNSCGFYRLINLLLE 466
                 VH  + + G+   ++  L    +V++K    S S       N L  
Sbjct: 411 DGTKAEVHTFKDVTGVLEILKPKLDADTIVLIKGPMSSRSM--IEFANNLKN 460


>gi|237807295|ref|YP_002891735.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
 gi|237499556|gb|ACQ92149.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tolumonas auensis DSM
           9187]
          Length = 489

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 148/472 (31%), Gaps = 42/472 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L+  +        P+  +  + +D+R + P   F A+KG   DG  F+  A QKGA 
Sbjct: 5   LKQLMAGLNIQ----APEIALCDMQLDTRLLQPGSLFLALKGHATDGRMFMQQAEQKGAA 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++ +         LSIP   V  +   +++LA         K  ++ +TG+ GK+T  +
Sbjct: 61  AILFDNSDGFVPSELSIPCIPVPALAEKVSELAGLFYDSPAQKLDLVGVTGTNGKSTCTQ 120

Query: 125 MLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMS 170
           ++        +             G  +       +   +  ++   + E      + +S
Sbjct: 121 LIANWTELFGQRGGVLGTLGNGLFGQLHATENTTGSAISIQQELARFVAEKVDVAAMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     ++   AV T ++  HL     ++  A AK  IF+       I    D +
Sbjct: 181 SHGLVQHRVSALQFAAAVFTNLSRDHLDYHHTMQAYAEAKRLIFKQTTPECCILNADDAT 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E L     A+         +           K   +   + +        +    +G 
Sbjct: 241 AREWLLQMPQAVVYGIDQQLPEHPGPFVYATDVKYHPQGITISIHSSWGDGVLSAPLLGK 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  L ++ +L  D +T  +  S   P  GR + +              + +   
Sbjct: 301 FNVSNLLAALAVMLVLQYDFETLCQTASRLQPVTGRMECFGNQDQPLVVVDYAHTPDG-- 358

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L     H  G    + G     G             ++      + L+  +
Sbjct: 359 -----LEKALQAARQHCHGHLFCLFG----CGGDRDRGKRPQMAAIAEQWADTLILTDDN 409

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L +    H   +         +  V GD++++  K 
Sbjct: 410 PRTEDPAAIIADMCAGLQKPEQAHIEHSRPKAIQLALAQAVPGDIILLAGKG 461


>gi|258649004|ref|ZP_05736473.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
 gi|260850620|gb|EEX70489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella tannerae ATCC 51259]
          Length = 487

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 99/478 (20%), Positives = 171/478 (35%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLLQ I            +NG+++DSR +     F A+KG   DGH FI  A++K
Sbjct: 1   MMKLSDLLQKISPLETRGSLTIDINGVNMDSRLVEKGNLFVAVKGTQTDGHAFIAGAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  ++V+  + A      +    V D   A+ K+A         +  ++ +TG+ GKTT
Sbjct: 61  GASAILVSEPIPAET-PTDVTFVRVADTEDAIGKVATTFYGDPTQRLKLVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARM---PVDVDFGIFEL 167
              +L    + +        +  N+IG            P+TL ++     D       +
Sbjct: 120 IATVLYHLFTELGFKCGLCSTVCNYIGTHAVPTEHTTPDPVTLNKLLGEMADEGCEYAFM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     +    A+ T +   HL      E    AK   F+GL K      N 
Sbjct: 180 ECSSHAIHQKRIGGLDFAGALFTNLTRDHLDYHKTFENYRDAKKAFFDGLSKQAFAITNA 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     I ++     AD++ +  ++  E     + L+    EV    
Sbjct: 240 DDKNGPIMVQNTKA----RIKTYSTRAAADYKGKILEESLEG----MLLEINGREVSVRF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+L   G    L    D  ++ LS  HP  GR +  R              Y 
Sbjct: 292 VGRFNVSNLLAVYGAAIELGVSPDETLRVLSSLHPVNGRFEAIRSPKGVSAIID----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   +S + +I  HG+ + I V G     G         L    +      V ++
Sbjct: 348 HTPDALANVLSSIDEI-VHGKAQVITVCGA----GGNRDKGKRPLMAQEAANRSDRVIIT 402

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFL------FIQSSLVDGDVVVV--KS 451
             +         + D L        ++T+  +           +    GDV+++  K 
Sbjct: 403 SDNPRFEEPQAIVDDMLAGLDETQRAKTI-AIVDRREAIRAAAAMAQAGDVILIAGKG 459


>gi|138894650|ref|YP_001125103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
 gi|166224776|sp|A4IM04|MURE_GEOTN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|134266163|gb|ABO66358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacillus thermodenitrificans NG80-2]
          Length = 489

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 147/477 (30%), Gaps = 46/477 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  + G  +       +  + +DSR + P   FF +KG   DGHDF   AV++G
Sbjct: 1   MKLQTLLSRLPGFWVHRGGNPDIVALEMDSRHVTPGSLFFCVKGFTVDGHDFAEQAVERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +  ++  + +      D   A+  LA A   +   +  +I +TG+ GKTTT
Sbjct: 61  AVAIVAERPLSVNVPVVVV-----PDSRRAMAILADAFYGQPTHRLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++        K    IG+    IG               +       + E      + 
Sbjct: 116 THIIEQVARKAGKKIGLIGTVGTKIGDRSYPAVNTTPESLVLQRTFKQMVDEGVEFVTME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALHQGRVHGCDYDVAVFTNLTQDHLDYHGTMEEYRNAKGLLFAQLGNRYDERRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +      +    I ++G  + +D    + +        ++     +M +   
Sbjct: 236 AVLNHDDPVSQYYKHMTAAPIITYGIKEKSDVMAEQIEMTPGGMAFQLCTPHGTMAIETK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L            + T  +AL+   P  GR +      N         + 
Sbjct: 296 LVGLFNVYNLLAATAACLASGFSLATIAEALANVSPVPGRFETVDEGQNFTVIVDYAHTP 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++         + L  +    +     V+G     G         L    ++        
Sbjct: 356 DS-------VENALKTVRQFAKRNVYVVIG----CGGDRDRTKRPLMAQAAVRYADVAVF 404

Query: 407 SGFHV---------LALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  +      +      +    +      +GDVV++  K 
Sbjct: 405 TSDNPRSEDPRQILRDMEAGVSAGDGTYVTIPDREEAIRYAIGQAQEGDVVLIAGKG 461


>gi|147678201|ref|YP_001212416.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
 gi|146274298|dbj|BAF60047.1| UDP-N-acetylmuramyl tripeptide synthase [Pelotomaculum
           thermopropionicum SI]
          Length = 496

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 155/475 (32%), Gaps = 45/475 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +LL+A++  + G      V GI+ DSR + P+  F AIKG   DGH++I  A+++GA  
Sbjct: 4   RELLEAVEADAAGGDLNAVVEGIAYDSRQVRPRFLFVAIKGFRADGHEYIGEALERGALA 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEM 125
           VV+   +        +    V D   AL  L+         K  +I +TG+ GKTTT  +
Sbjct: 64  VVMERRVE---LPPGVAWALVPDARRALALLSARFYGNPSFKMKLIGVTGTNGKTTTTSL 120

Query: 126 LTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFE-----LGMSH 171
           +   L+        IG+ NN IG          P +     +  +  I +     + +S 
Sbjct: 121 IADILAGAGCRVGLIGTVNNRIGDRVLPVKHTTPESADLQQLLHEMVIEKVDACVMEVSS 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLNYDD 229
                         +AV T +   HL     +E+      K   + G             
Sbjct: 181 HALALHRVDGSEFDLAVFTNLTQDHLDFHRDMEDYLESKLKLFKWLGRPGHKREAGIAVI 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +    +       T+Y++G    AD +       +  +   V  +   + +     G
Sbjct: 241 NADDPHAGQFIRAAGGTVYTYGIKNAADVRAESISIGARGACFGVAGKWGRLRLDLRITG 300

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L      + +    +   +AL       GR +      +         + +  
Sbjct: 301 LFNVYNALAAFTASAAMGVPAEEIKEALEKARGAPGRFEMVDSGQDFAVVVDYAHTPDG- 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   ++L       EGR I V G     G         L   ++        ++  
Sbjct: 360 ------LENILKTARKITEGRLITVFG----CGGDRDRTKRPLMGGIAARYSDFAIITSD 409

Query: 410 H---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  +++ +  +    Y                   GDVVV+  K 
Sbjct: 410 NPRTEDPLKIIKEIEEGMKTAGWERYVTEPDRRKAIRLAVEMARRGDVVVIAGKG 464


>gi|294085906|ref|YP_003552666.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665481|gb|ADE40582.1| UDP-N-acetylmuramyl-tripeptide synthetases [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 502

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 92/480 (19%), Positives = 169/480 (35%), Gaps = 47/480 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ +            + G+S +SR+I P + F A+ G   DG  +I  A+  GA 
Sbjct: 3   LSDLLKNL-ADIPDQAASIKIGGMSENSRAIKPGDMFAAVAGSSTDGRIYIKAAIDAGAR 61

Query: 67  LVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +++ +   + A +  L  P+  V++    L K A     +    I A+TG+ GKT+T + 
Sbjct: 62  VILTDMRPLEAPLDDLDTPIIMVENPRLVLAKAAARFWHKQPGMIAAVTGTNGKTSTTDF 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-------------------VDFGIFE 166
           L    + +    + IG+          +    +D                    D G+  
Sbjct: 122 LRQLWTRVTWQASSIGTLGVKGTDTRKMDGKILDLPKLTTPDSVSLHSALSPLCDAGVTH 181

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             L  S  G ++     +  HIA  T +   HL + + +E    AK+ +F  L       
Sbjct: 182 LALEASSHGLVQQRLDGLNIHIAAFTNLTQDHLDHHNDMESYFIAKSHLFMDLLMHAGAA 241

Query: 225 LNYDDSFF----ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           +   D  +      +           I +FG + +ADFQ+ K         M V+  GKS
Sbjct: 242 IINIDDPYGRRLCDMLTAQGDARQIVIQTFGFADDADFQIEKITPIDNILDMSVKHDGKS 301

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G   A N L    +  +    +  ++  L+   P  GR    +         
Sbjct: 302 WHIPLAMSGTFQAVNALTAGIMAYMSGLPLQDSLGGLAYLKPAPGR---MQTVTGHPQGA 358

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I   +   P +++AA+     + P    +   + G     G         L   ++   
Sbjct: 359 QIVVDFAHTPDALRAALEA---LRPEVSHKLYVLFG----CGGDRDPSKRALMGAIADDA 411

Query: 401 ISHVWLSG-----FHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V ++          +++ A+       +      D         LV+GDV+++  K 
Sbjct: 412 ADVVIVTDDNPRSEDPASIRSAIMAASPKSIEIFP-RDTAIKTALEQLVEGDVLLIAGKG 470


>gi|170718778|ref|YP_001783961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 2336]
 gi|168826907|gb|ACA32278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus somnus 2336]
          Length = 495

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 155/487 (31%), Gaps = 57/487 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LW   +           +     +  + +DSR       F AIKG   DG +FI+ A+
Sbjct: 5   TALWDIDE-------QLDSVHRDIELQEMILDSRLAKTGCLFVAIKGHRVDGREFIMQAI 57

Query: 62  QKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           Q GA  V+  TD+V          +IP+    ++   L+ +A           T++ +TG
Sbjct: 58  QNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165
           + GKTT  ++L      +  T A +G+  N  G+   +          I           
Sbjct: 118 TNGKTTIAQLLAQWTQILGHTSAVMGTIGN--GLFGQIKEASNTTGSAIEIQSSLDKFIR 175

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G ++     +     + T ++  HL     +E  A AK  +F  L  
Sbjct: 176 QGADFAAIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNC 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQ 275
              I    D+     L   S         S       D +           S+ + +E  
Sbjct: 236 QHKILNVDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFA 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    IG     N+L+ L  +  L  D+D  +  +       GR +       
Sbjct: 296 SSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIDKLLATVRQLTGVCGRMEMLSAKHK 355

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    + +A         + L   + H +G+   + G     G         L   
Sbjct: 356 ATVIVDYAHTPDA-------LENALQSAAVHCQGKLWCIFG----CGGDRDRGKRPLMAA 404

Query: 396 LSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++      V ++  +         +  +     +S  V      +        S V+ DV
Sbjct: 405 IAEKFADSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDV 464

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 465 VLIAGKG 471


>gi|284039586|ref|YP_003389516.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
 gi|283818879|gb|ADB40717.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirosoma linguale DSM
           74]
          Length = 498

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/476 (12%), Positives = 149/476 (31%), Gaps = 47/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+   I   +        V  +++DSR   P   F A++G   DGH +I  A+Q+GA 
Sbjct: 9   LKDIFYKIPLLATSGSMNTEVTSLTMDSRKAGPGSLFIAVRGTVTDGHAYIETAIQQGAT 68

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++     + +  +  +    V +    +  +A     +   K  +I +TG+ GKT+   
Sbjct: 69  AILCEE--IPAETNPDVAYIRVQNSARTMGLVAANFYDQPSQKLKLIGVTGTNGKTSVAT 126

Query: 125 MLTIALSSIKKTY---ACIGSYNNHIGVPLTL-------------ARMPVDVDFGIFELG 168
           +L     ++       + + +  +   +P T                +         E+ 
Sbjct: 127 LLFRLFRALGYRCGLLSTVQNQIDDDVIPATHTTPDVITTNQLLTKMLAHGCTHVFMEV- 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    ++     +     + T I   HL      +    AK   F+ L  +     N D
Sbjct: 186 -SSHAVVQERIAGLSFVGGIFTNITHDHLDFHGTFDNYIRAKKGFFDQLPASAFALTNVD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A       ++     A F+ +          M +  +    +++    
Sbjct: 245 DKRGLVMLQNTVARKE----TYSLQTLASFKGKILADSLFGLNMLIDEREVWFKLIGQFN 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
            Y++       + +            + L++         R+   ++      I + Y  
Sbjct: 301 AYNLLSVYGTAILLGE-------DPTEVLTMLSGITPPPGRFEQVVSDDKIVGIVD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +  ++++    E   +  +  +   G    +    +   ++    + V L+ 
Sbjct: 353 TPDALQNVLETINELRSTDEQDYMPQIITVVGCGGNRDTSKRPIMADIACRLSNRVILTS 412

Query: 409 FHVL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        + + +               E                D+++V  K 
Sbjct: 413 DNPRNEDPMDILEQMQAGVSPVDFKKTITIEDRHEAIRKAVELAKPHDIILVAGKG 468


>gi|29840139|ref|NP_829245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
 gi|33301362|sp|Q823N2|MURE_CHLCV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29834487|gb|AAP05123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila caviae GPIC]
          Length = 483

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/472 (18%), Positives = 161/472 (34%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I+    G V    V  ++ DSR++   + F A KG  +DG+DF   A++ G
Sbjct: 1   MNLKELLNNIEAKIYGKVSPIEVRNLTKDSRNVGFGDIFIANKGKQFDGNDFSPLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  +  +         LS+      ++     +L+            I+ +TG+ GKTT 
Sbjct: 61  AIAIASS----IYNPFLSVVQIVSSNLPQLEAELSAKYYNYPSKKLCIVGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++        K    IG+  + +G               + +              + 
Sbjct: 117 SHLIKTLFDGCNKPSGLIGTIEHVLGNNRIQDGYTTPESCLLQKYLAEMVKNRLTSAVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +G +      V   + V+T I   HL      EE  +AK ++F  L  TG   +N D
Sbjct: 177 VSSVGLVLERLAEVDFDVGVLTNITLDHLDFHGSFEEYINAKLKLFSKLPATGLAVVNGD 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            S+       + A  I    ++G    AD++    +     +  ++  +G+S+      I
Sbjct: 237 LSYASRFLEMTQAQPI----TYGIECPADYRAMHLRSSPFGTDFDLVYRGESLPCRLPLI 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L  + +           + +L+     E    R     +      ID ++  
Sbjct: 293 GKHNVYNILAAIAVAHQHCNGDLQQLISLAAN--VESPRGRLEPVFSGPCPIYIDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +  +++     L  + P  +G+ I V G     G         +   +       V  S 
Sbjct: 351 D--ALENVCKTLHALLPE-QGKLIVVFG----CGGDRDQSKRQIMAEVVERYGFAVVTSD 403

Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              G     +  A+                    +  S   D D+V+V  K 
Sbjct: 404 NPRGEDPEEIIKAICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|254449013|ref|ZP_05062467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
 gi|198261407|gb|EDY85698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium HTCC5015]
          Length = 514

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/481 (17%), Positives = 153/481 (31%), Gaps = 48/481 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL       +       +  +  DSR ++  + F A+ G   +G DF   A+++GA
Sbjct: 11  TLKALLH--GIAEVSAAADRPIRSVCTDSRKVSAGDVFLAVNGARVNGLDFAGQAIEQGA 68

Query: 66  GLVVVNTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
             V+    +          +  + +  +  +   +++L+  A        TI  +TG+ G
Sbjct: 69  VAVLSEQSIEEPSLLESASAHQVALLWLPSLPQQVSELSARALGHPSHNMTITGVTGTDG 128

Query: 119 KTTTKEMLTIALSSIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KT+    L  AL+++                    + N   G            + GI  
Sbjct: 129 KTSVAHFLAQALTALNPPVALVGTLGSGNLDQLHKTQNTTPGAVELQQLFSDFREQGIRH 188

Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           + M  S  G  +   + V   +AV+T +   HL     + + A AK ++F       ++ 
Sbjct: 189 VAMEVSSHGLDQGRVNGVAFDLAVLTNLGRDHLDYHRSMADYADAKRQLFYKSGLKASVL 248

Query: 225 LNYD---DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              D         L+ +    G            A  +    +   +    +V   G+  
Sbjct: 249 NCDDDFGCMLALELEERLPVYGYGFDGDMSPQMTARVRGHNLQLTVDGLRFDVSSGGQRY 308

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G   A N+L  +  +  L   +  A++ +S   P  GR +  +          
Sbjct: 309 TVDVALMGRFNASNVLAVITSLLALGVPLPEAVEVVSRLQPVPGRMECLKLPNGAVAVVD 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +  A           LS +  H  GR   V G     G         L    +    
Sbjct: 369 YAHTPQA-------LEQTLSSLREHSGGRLFTVFG----CGGDRDKGKRPLMGRAAERFS 417

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             +WL+  +            + + L      H   + +        S   GDVV++  K
Sbjct: 418 DALWLTDDNPRSEKPEAIIDDICEGLDAPQLAHRIHSREAAIQAALESAAPGDVVLIAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|157964739|ref|YP_001499563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
 gi|157844515|gb|ABV85016.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia massiliae MTU5]
          Length = 484

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 152/456 (33%), Gaps = 52/456 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FF IKG + DG+DFI  A+ KGA LV+ +      I      V 
Sbjct: 19  VKGLSINSKTVKDKDVFFTIKGRNTDGNDFIKDALSKGAVLVITDNKKNIVID----KVI 74

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV  AL +       ++   +IA+TG+ GK++    +    S + K  A IG+    
Sbjct: 75  YVKDVQAALYEAIEIFYPKTPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 134

Query: 147 --------IGVP------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                     VP            +        +++ +FE   S  G  +     ++ +I
Sbjct: 135 IFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVNI 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T+ +  HL      E    AK ++F        I +   D                 
Sbjct: 193 ACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNIK 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             + GK  + +          +   +      +        IG   A N+L+ +  +   
Sbjct: 253 FITVGKKGDLEITRINGSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSIHYT 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D  I +L      +GR +R         +    ++       +K            
Sbjct: 311 GFAFDDVIDSLVEVKAVKGRMERIDNTHIFVDYAHTPDALAKALTELKNI--------KL 362

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
              +   V G     G         L   ++  +   + ++  +            +   
Sbjct: 363 RGSKLSVVFG----CGGNRDKAKRSLMGQIAAKHADTIIITDDNPRNEDPKLIRAEIISG 418

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + ++ +   +   +    +  ++L   D ++V  K 
Sbjct: 419 IEKADYTEIA-NREEAIKYGINNLKQDDTLLVAGKG 453


>gi|299534526|ref|ZP_07047858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
 gi|298729899|gb|EFI70442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus fusiformis ZC1]
          Length = 488

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 98/472 (20%), Positives = 169/472 (35%), Gaps = 42/472 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  V    V+ I IDSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 3   AEELLSALPLKKIIGVLPDQVSDIVIDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
           +VV   ++       +I    V D   A+  LA           T+I +TG+ GKT+   
Sbjct: 63  IVVTERELP---LGETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 119

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170
           ++   +  + +  A       N  G+    A    D       IF   M          S
Sbjct: 120 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G        V   IA+ T +   HL     +EE   AK  +F  L +          +
Sbjct: 180 SHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 239

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             +    +  A+    ++++G K++NADF+    +     +  +V++      V  + +G
Sbjct: 240 ADDAWSERYAAMTPFPVWTYGLKNENADFRAINCEYHDYMTSFDVEMPEGIYRVKMNLLG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  +         +++ I+ +    P +GR ++    L    F     + +A 
Sbjct: 300 EFNIYNVLAAMIAFYGRGYSMESIIEQIEQLPPVKGRMEKVCSELPVQIFIDYAHTPDA- 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                     +    P+ +G+ I ++G     G   +S    +AE  S     +V L+  
Sbjct: 359 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 407

Query: 410 HVLA------LKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                       D     +H +Y+                  GD+++   K 
Sbjct: 408 DPRYEDYDSITGDLAKGMLHDNYACIGDRAEAVRHAVEIAEPGDMIIFAGKG 459


>gi|37523061|ref|NP_926438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
 gi|46576919|sp|Q7NFN2|MURE_GLOVI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|35214064|dbj|BAC91433.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gloeobacter violaceus PCC 7421]
          Length = 489

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 164/476 (34%), Gaps = 46/476 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P    H+LL    G     +P   + G+S DSR + P + F  + G   DG +F   A+ 
Sbjct: 2   PAMRLHELLART-GLDTRNLPDIDIAGLSTDSRQVQPGDLFIGLPGTRVDGSEFWPQAIA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            GA  +V++ +        ++PV  V DV+G   +LA A       K T+  +TG+ GKT
Sbjct: 61  GGAAGLVISENARG--VEAAVPVIRVPDVVGTCARLASAYYDFPARKLTLAGVTGTNGKT 118

Query: 121 TTKEMLTIALSSIK--------KTYACIGSYNNHIGVPLT-------LARMPVDVDFGIF 165
           TT  ++   L +           +     S       P            +     +G+ 
Sbjct: 119 TTTHLIENLLQAQAPTGLVGTLYSRWPGQSQEARHTTPFALEIQKLLAQMVEAGCQYGVM 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH    + +    R   AV T +   HL     +E    AKA +F    ++G   +
Sbjct: 179 EV-SSHALAQQRVAGC-RFEAAVFTNLTQDHLDFHPDMESYFQAKATLFSPEYRSGRAVI 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L A    +     +++     AD          E     +           
Sbjct: 237 NADDPWGVRLAAAYDQV-----WTYSFQPGADIYPEDAVFTPEGIRGTLVTPVGRAAFTS 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  +G    L  D++     LS F    GR               +   
Sbjct: 292 PLVGQFNLANLLAAVGATLALGIDLEAIAAGLSGFGGVPGR---MERVSGSDDDIAVIVD 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  ++  +       P   GR I V G     G+  ++    +  + +  +   V 
Sbjct: 349 YAHTPDGLRKLLEAT---RPFVRGRLICVFG---CGGDRDRTKRPQMGRIAAELSDLPVV 402

Query: 406 LSG----FHVLALKDALPRSIHVHYSETMD----GLFLFIQSSLVDGDVVVV--KS 451
            S      +  A+ D +   I V  S T++       L        GD VV+  K 
Sbjct: 403 TSDNPRTENPEAILDDILAGIPVGVSPTVEVDRRRAILQALLEAKAGDCVVIAGKG 458


>gi|163790158|ref|ZP_02184592.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874649|gb|EDP68719.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 535

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/514 (17%), Positives = 174/514 (33%), Gaps = 58/514 (11%)

Query: 5   WTFHDLLQAIQGHSIG------IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               DLL++++  SI        + +  +N I+  S+ +     F  IKG   DGH++  
Sbjct: 1   MNLTDLLKSVEIDSIRPNQIETELNEIDINKITYHSKEVETDTLFVCIKGHQTDGHNYAK 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
           HAV +GA +++V       I  L +    V +    L  L+     +     ++  +T +
Sbjct: 61  HAVSQGATVIIVEQ----FIEDLDVLQLKVSNSREVLAILSSNFFDQPSKSMSLFGVTAT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLGE 174
            GKTT   M      + +     IG+    I   + ++R+  P   D   +   M     
Sbjct: 117 NGKTTITYMTEEIFKAYQLKSGIIGTIVVKIDKEIEMSRLTTPESYDLQQYFAKMRDQEI 176

Query: 175 IRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                            +     +   T I+P H+      E    AKA +     K  T
Sbjct: 177 THVSMEVSSSALELKRVYHTDFDVVAFTNISPEHIQLHDSFEAYFDAKASLIRNASKMST 236

Query: 223 IFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---- 276
             LN D+     L  ++ A  +        G    +D +        + +  E       
Sbjct: 237 AILNLDEQLLIPLAEETAAQVVTFGIENKSGTITVSDIRFSSGMPSFKVTIQEPFNTLSG 296

Query: 277 ---QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +  S ++     GYH   N L  L    +    ++   + +  F   E R +     
Sbjct: 297 ERIEPTSFDLELSIPGYHSIYNALTALVTGLVNDIPLEYVQRGIKNFRGVERRFQILYDK 356

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +     + +    N  ++ + +  ++ +  +      A+ G        S      LA
Sbjct: 357 EFK-----VIDDLLLNQNNIDSCMETINHLDYNELHLVHALRGSNG--PAHSTEIAESLA 409

Query: 394 EVLSLYNISHVWLS--------------GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           +      IS + L+                    LK     +I V +S  +D    F   
Sbjct: 410 KWFHELKISKIILTTASSHVAKKDAVTDEELAAFLKVMKQSNIEVTFSTELDDALRFGVE 469

Query: 440 SLVDGDVVVVKSSNSC--GFYRLINLLLEEFPAI 471
            L + DV+++  ++S   G  + + LL E +P +
Sbjct: 470 RLNEEDVLLISGAHSMDQGARKTLELLKEIYPTV 503


>gi|87312133|ref|ZP_01094238.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
 gi|87285161|gb|EAQ77090.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Blastopirellula marina DSM 3645]
          Length = 496

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 152/469 (32%), Gaps = 50/469 (10%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + G  I       V   + +S+   P + F A+ G H DGHDF+  A+  GA  ++    
Sbjct: 2   LPGAKILGAEDIVVRSCAANSKLCLPDDLFVAMVGAHQDGHDFVEEAIANGASAILSERA 61

Query: 74  MVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           +       + PV  V++   A  ++  A+A     +  +I +TG+ GKTT   ++   + 
Sbjct: 62  L-----PTTRPVCIVENTQSAYAQICQALAGDPSKRMRVIGVTGTNGKTTVCRLIQSIME 116

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEI 175
           +   T     S     G                               + E   S     
Sbjct: 117 TAGATVGMSSSLGYDNGYDRQPWDCTTPNAAVLADLLSRMEYNGCTHAVVE--ASSEALS 174

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           R     +      IT +   HL     +     AK +I   L +TG   +N DDS    L
Sbjct: 175 RDRLDGIELDAVAITNLRQDHLDVHGSVTNYHRAKKKILGRLRETGFAVVNADDSACNKL 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            ++     +    S      A+      ++   +    +    +++ V    IG H   N
Sbjct: 235 LSQIETPAL----SVALHGAAEITASVVERHKSEQTFLLSAGDETVPVCTRMIGDHHVYN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L+   +  +   D+ T ++ L       GR +R  C    G F  +  +++A       
Sbjct: 291 CLVAAAVGLVYGVDLKTVVRGLERVDSIPGRMQRIECGQPFGVFVDLAHTHDA------- 343

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHV 411
               L  +     GR I V G    +G+ S+     L   ++        ++    G   
Sbjct: 344 LAMALKALRRVTHGRVICVYGADG-LGDPSK---RPLLGRVAERGADLSLITSANPGDES 399

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                  + D   R    H          +  S    GD V++      
Sbjct: 400 PLEVIHDILDGYERPARAHVMPNRAAAIEWALSEAQTGDTVLIAG-RGT 447


>gi|114564959|ref|YP_752473.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           frigidimarina NCIMB 400]
 gi|114336252|gb|ABI73634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella frigidimarina NCIMB 400]
          Length = 496

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/481 (15%), Positives = 151/481 (31%), Gaps = 51/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +DLL            +  VNG+++DSR +     F A+ G   DG  FI  A+  GA 
Sbjct: 3   LNDLL----APWFHYSGRESVNGLTLDSRDVERGGLFVALPGHKVDGRAFIPQAINAGAT 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAAR--LRSKATIIAITGSVGK 119
            ++++TD     G +    + V  V        L+ +A           ++I ITG+ GK
Sbjct: 59  AILIHTDNPDEHGIVDRLQYTVPLVFFCQLGRQLSAVAAQFYLSNSQSLSLIGITGTNGK 118

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------F 165
           T+  +++   +  +  +        N   G  +       D    +              
Sbjct: 119 TSVSQIIAQIVYLLGHQAAVMGTLGNGLWGQLVDSGNTTADAITVMRQLSEFAAEGAELC 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++         IAV T ++  HL     ++  A+AK  +F+       +  
Sbjct: 179 AMEVSSHGLVQGRVEAAPFEIAVFTNLSRDHLDYHGDMDSYAAAKKRLFKFPSIKHGVIN 238

Query: 226 NYD---DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSM 281
             D     +   L +  +        S         +       +          +  S+
Sbjct: 239 IDDAVGAKWLTELASDQNKSFSIKGNSAADFYCDAIEYHDAGVTATLHFVEIDSEKSVSV 298

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++    +G     N++  + ++ +    + + +  L +  P  GR +R+    N      
Sbjct: 299 QLNSPLLGAFNLSNLVAAIAVLYLQGKPMASILAVLPLLIPVAGRMERFSSVNNATLVVD 358

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A           L  +  H +G    V G     G         L    +    
Sbjct: 359 YAHTPDA-------IEQALKALRLHCKGTLWCVFG----CGGDRDKGKRPLMAQAAERYA 407

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            +   + +   V            + S     D+V++  K
Sbjct: 408 DKVMITSDNARSEDPQTIINDILQGISQPQKVLTRVDRIEAITHVVSLAQVNDIVLLAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|294501023|ref|YP_003564723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294350960|gb|ADE71289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 487

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 74/476 (15%), Positives = 155/476 (32%), Gaps = 46/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +            +  I +DSR + P   F  I G   DGH F   AV+KG
Sbjct: 1   MDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++    +   +  + +          A+  LA A   +   K  +I +TG+ GKTT 
Sbjct: 61  AVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTI 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++     S  K    IG+    IG      +        +       + E      + 
Sbjct: 116 THLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV + +   HL     +E+   A        G          
Sbjct: 176 VSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +       T+ ++G  +++D +    +  +  +  ++    +++ V   
Sbjct: 236 AVLNADDAATEEYIKNTAATVITYGIDRDSDIRATNIQITNSGTTFDLTTPTETVRVEMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    +   ++ + V     GR   +     +  FT+I + Y
Sbjct: 296 LIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGR---FEVVDAEQDFTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +  + + +   +     ++G     G         +   ++    +   L
Sbjct: 352 AHTPDSLENVLKTVKEFA---KRNIYVIVG----CGGDRDRTKRPIMARIAAEYSTQAIL 404

Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +++ L    +V  +        +   +    DVVV+  K 
Sbjct: 405 TSDNPRSEDPLAILKDMEEGLDTDNYVTIA-DRAEAIRYAVEAAHADDVVVIAGKG 459


>gi|254362466|ref|ZP_04978574.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
 gi|153094058|gb|EDN74970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mannheimia haemolytica PHL213]
          Length = 496

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/463 (15%), Positives = 138/463 (29%), Gaps = 58/463 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82
           ++DSR +   + F A+KG   DG  FI +A+++GA +++   D       L         
Sbjct: 25  TLDSRQVQAGDLFVALKGHQVDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNL 84

Query: 83  -----IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  V  V  +   L+++A         K T+  ITG+ GKTTT ++L         
Sbjct: 85  DRTACCKVVSVPRLPKLLSEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQW--HNLL 142

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLT 179
                       G+   +          I                  + +S  G  +F  
Sbjct: 143 GGKSAVMGTIGNGLYGQVQEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRA 202

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   +A+ T ++  HL   + +EE A AK  +      T    +N DD        + 
Sbjct: 203 EALDFDLAIFTNLSRDHLDYHNTMEEYAQAKFRL-FNELSTKAQVINADDEIGREWLTQL 261

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 +        +   +    K   + + +  +    + E+    IG     N+L  
Sbjct: 262 PNAVAVSTDPKFAGNHQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTA 321

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  D+   +K         GR +                + +A           
Sbjct: 322 FAGLLALGFDIQELVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDA-------LEKA 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           L     H EG    + G     G    +    L   ++      V  +  +         
Sbjct: 375 LQAARLHCEGELWCIFG----CGGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKI 430

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +     +   + +    +             DV+++  K 
Sbjct: 431 MADIVKGFSKPQQIIH--NREEAIKTAIEQAKATDVILIAGKG 471


>gi|83814974|ref|YP_444699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
 gi|83756368|gb|ABC44481.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Salinibacter ruber DSM 13855]
          Length = 522

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 96/473 (20%), Positives = 165/473 (34%), Gaps = 46/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            DLL      +    P    + G++ DSR++ P   F AI+G   DGH FI  AV  GA 
Sbjct: 42  ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           LVV       A      +    V D   AL + A A       +  ++ +TG+ GKTT  
Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADELRLVGVTGTNGKTTVA 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGM 169
            ++   L ++ +T   + +     G              V     R  VD       + +
Sbjct: 162 YLVHHLLEALGETAGLLSTIKVQAGGETTALALTTPGPLVLHRTLRRMVDRGCTACAMEV 221

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +   H +   +A+ TT++  HL     +++  +AK  +F+ L    T   N DD
Sbjct: 222 SSHALDQDRVHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNADD 281

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                + A + A     + SFG  ++AD +    +   +       ++    E      G
Sbjct: 282 EAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQR----VRLDGHERDTQLAG 333

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A NM    G  + L    +    AL+   P  GR +  R        T +   Y   
Sbjct: 334 RFNASNMAAAYGTGTALGHAPEAVADALADAPPVPGRVEPLRFGDG----TTVIVDYAHT 389

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++  +  +   +P        V G     G    +        ++      V ++  
Sbjct: 390 PDALENVLRTVRDTTPAKAALWC-VFG----CGGDRDAGKRPTMGRIAERLADRVIVTSD 444

Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            + D + R   + +    +          + GDVVV+  K 
Sbjct: 445 NPRTEAPVAILRDICDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497


>gi|218903320|ref|YP_002451154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
 gi|218538769|gb|ACK91167.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus AH820]
          Length = 246

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 7/230 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  +     L + I G           ++G+ IDS+++     F  I      DGHD++ 
Sbjct: 1   MIQM-NLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +             +P+  VDD L AL +LA   R      +I ITGS G
Sbjct: 58  EAMDNGAVASLWKKSY--GTPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT K+++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G     
Sbjct: 116 KTTVKDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIE 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        +   + + F     + S + E    ++          
Sbjct: 176 RFTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 225


>gi|259416449|ref|ZP_05740369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
 gi|259347888|gb|EEW59665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Silicibacter sp. TrichCH4B]
          Length = 494

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 146/476 (30%), Gaps = 41/476 (8%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   P      L     G +        + G+++DSR +     F A+ G    G  F+ 
Sbjct: 1   MTERPALKLSQL-----GLTARAGMDPQITGLAVDSREVQQGFVFAALPGSRVHGAKFVD 55

Query: 59  HAVQKGAGLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             + +GA  ++ +T      G         +   +D   AL+  A          + A+T
Sbjct: 56  QVLDQGAVAILTDTAGAEIAGEAIARAGAALVVAEDPRQALSGAAALWFGGQPPVMAAVT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFG 163
           G+ GKT+    L +  + +      +G+          LA    +            + G
Sbjct: 116 GTNGKTSVSTFLRMIWTELGHQAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAG 175

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +    +  S  G  +     V+   A  T     HL      E   +AKA +F  +    
Sbjct: 176 VTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSED 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +               A   + I + G+    D  L   +  +    +      +  
Sbjct: 236 GVAVINMTDPKGAKMRAIAAARGQEIITVGR-GLGDIALMGMRVDATGQDIRFTWHDRPF 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               + IG   A+N+L+  G+      D       L       GR +      N      
Sbjct: 295 AKRLNLIGGFQAENVLVAAGLAIASGEDPVQVFDTLPHLSTVRGRMELAATRENGA-TVF 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +  +       +  + PH  GR +A++G     G    +    L    +  N 
Sbjct: 354 VDYAHTPDAIAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGQAAHENA 404

Query: 402 SHVWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V ++          A++ A+                 L     L  GD +++  
Sbjct: 405 DTVIVTDDNPRSEDPAAIRAAVMGGAPDALNVGDRAEAILRGVDMLEPGDALLICG 460


>gi|256372579|ref|YP_003110403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009163|gb|ACU54730.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 487

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/472 (20%), Positives = 168/472 (35%), Gaps = 45/472 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  DL   +    +   P   +  I++DSRS++P   F A +G  +DGHDF+  A+ +
Sbjct: 1   MLTLRDLHGLVPSARLVGDPSVAIADITLDSRSVSPGAMFCATRGSRFDGHDFVSDAIAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++V  ++     +L IP   V  V  A+  L      R   +  ++ ITG+ GKTT
Sbjct: 61  GAVALLVQHEV-----ALDIPQLVVPSVRHAIGGLVAGFFGRPSERLDLVGITGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T   +   LS   +    IG+     G             P     +   VD G+    +
Sbjct: 116 TSYFIDSILSLAGRRTGLIGTIEARFGDSNRPSMFTTPEAPELHRLLRQMVDDGVDSVVM 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +         I V T ++P HL     IE+  +AKA++F        +    
Sbjct: 176 EVSSHGIDQHRIDGTSFRIGVFTNLSPEHLDYHGTIEQYYAAKAQLFLPERTKQAVIGTD 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +    L               F   +  D +  +        +  V    +   +    
Sbjct: 236 TEWGVRLATQVRIPAVTYGPAPFSDYRVEDVRYDE----YGTIFTVVVGGRRRWRLRVPI 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N    + +   L  + DT  + L+  H   GR   ++       FT++ + Y 
Sbjct: 292 YGIHNAYNAAAAVAVAEALGIEGDTIERGLAECHQVAGR---FQRIDAGQPFTVVVD-YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P S++A I+    +SP   GR I V G     G   +    +L    +  ++  +  +
Sbjct: 348 HTPDSLRALIATARALSPK--GRVILVAGA---RGRRDRLKRPELGRAAATADV-AILTA 401

Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     +   L           +       G          + DVV++
Sbjct: 402 DNPGDEDPGEIVAQLLAGTLDVDHKQIIVELDRRGAIGHAIEIAEESDVVLI 453


>gi|322436310|ref|YP_004218522.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164037|gb|ADW69742.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX9]
          Length = 489

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 157/475 (33%), Gaps = 46/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             + L  I            V G+  DSR +   + F A+KG   DG+ FI  A+  GA 
Sbjct: 3   IDEALAGID-VLERGSGSADVTGVQYDSRRVVAGDVFVAMKGESSDGNRFIETAIAHGAR 61

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            +V ++   A     ++P + V +   AL  +A       +    I A+TG+ GKTTT  
Sbjct: 62  AIVTDS-REAWAAGGAVPFYLVGNGRRALAGVAANVFGHPEHVLKISAVTGTNGKTTTAF 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           +L   L S+ +    IG+   HIG                + L    +       + E+ 
Sbjct: 121 LLEQMLKSVNRKCLLIGTIETHIGDEVRVSEHTTPESRDLLALFADGVKAGCTEAVMEM- 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH      +  +    +A+ T +   HL     +E    AKA +FEG+          +
Sbjct: 180 SSHALAQERVWGVP-VDVAMFTNLTQDHLDYHGTMERYFQAKARLFEGVGAEAPRVAVVN 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     +   +  LG + +         +F+  K    + ++    +    ++++     
Sbjct: 239 EDSPAGVWLLTRDLGPEVMSY--GINAGEFRASKVALSAGRTQFLWETPYGAVQIDSPLT 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L            ++   KA            R++   N    T++ +  + 
Sbjct: 297 GKVNVYNLLAASCAAMGRGLTLEEIAKAA---QGLHQVPGRFQTVPNDLGITVVVDYAHT 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +      A+  L  ++    G+   +   +   G              +      V L+ 
Sbjct: 354 DD-----ALRNLIGLARELVGKGRVI--TLFGCGGDRDKTKRPKMGRAAGEGSDLVVLTN 406

Query: 409 FHVL-----ALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +       A+ D     +                      ++  GD+V++  K 
Sbjct: 407 DNPRTEEPGAILDEALAGVRETSVECVVEPDRATAIALAIKAVKGGDIVLLAGKG 461


>gi|221632928|ref|YP_002522150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
 gi|221156470|gb|ACM05597.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermomicrobium roseum DSM 5159]
          Length = 505

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/482 (17%), Positives = 141/482 (29%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            HDLL  +     G      V  +  DSR   P   F A++G H DGH ++  A  +GA 
Sbjct: 4   LHDLLSDLFAELRGDDA-IMVTRVVYDSRQATPGSLFVALRGTHTDGHCYLADAASRGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             VV       +  L   +  V D   AL  +A            +I +TG+ GKTTT  
Sbjct: 63  AAVVEEWPSQDVPGLR-TIARVSDTRVALAAIAARFYGHPASDLGLIGVTGTDGKTTTTF 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD------------------FGIFE 166
           ++   L +       IG+    IG       +                       + + E
Sbjct: 122 LIDAILRTAGYRTGLIGTVALRIGDEFVAHDLRQTTPESLDVQAFLARMRATGVAWAVVE 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE---IFEGLEKTGTI 223
              +  G            IAV+T +   HL     IE    AK           +    
Sbjct: 182 --ATSHGLELHRLDHCPFDIAVVTNVTQEHLDFHGTIENYRRAKGRLLEFVRDRPERAYP 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                ++  E  ++ +   G   I  +  +  A       +   + +   ++   ++ +V
Sbjct: 240 RGIVLNADDEGARSLARFAGSVPILWYSATGKAVLVAENARMTDKGTSFRLRYGDQAADV 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G    +N L   G   +L   +D  +  L       GR     C           
Sbjct: 300 HLRLFGLWNVENALAAAGTGILLGIPLDQVVTGLQQLAAVPGRFTPIDCGQPFRVIVDYA 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-- 401
            +  +          VL        GR I V G   E   + +     +A  L+ + +  
Sbjct: 360 HTPKS-------FERVLPLARSLARGRVIVVFGSAGERDRIKRRLQGAIAARLAEFAVFT 412

Query: 402 ---------SHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                      +          ++A           E               GD+V++  
Sbjct: 413 SEDPRHEDPDAIIA--EIAEGAREAGAQEGQQFVCVEDRALAIREAFRRARPGDIVLLLG 470

Query: 450 KS 451
           K 
Sbjct: 471 KG 472


>gi|192360758|ref|YP_001983390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
 gi|190686923|gb|ACE84601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cellvibrio japonicus Ueda107]
          Length = 521

 Score =  138 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 149/495 (30%), Gaps = 58/495 (11%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN P  T       +   ++G         + +DSR +   + F A+ G   DG  FI +
Sbjct: 1   MNRPSLTLGQ---WLPELALGKAASLVPGSLCLDSRQVKQGDIFIALVGTRADGRQFIAN 57

Query: 60  AVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           AV++GA  V V    +         +PV  ++ +   L++LA            ++ ITG
Sbjct: 58  AVEQGAAAVFVEADKEWQGVHWIGEVPVIALEQLTARLSELAGRYYAHPSRELRLVGITG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--------------------- 154
           + GKTT   +L   L+ +              G+    +                     
Sbjct: 118 TNGKTTCSLLLAQLLAGVSGQGCSAVIGTLGYGLVDKHSLTPIAQQISLLTTTGLTTPDP 177

Query: 155 -------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                  R           + +S     +     +    A+ T +   HL     +    
Sbjct: 178 VALQRILRQLRTGGASSAAIEVSSHSLQQKRVAGLAFDTAIFTNLTQDHLDYHGDLASYG 237

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AKAE+   +        N DD++ + L AK+ A        F   + AD  LR     +
Sbjct: 238 KAKAELLF-MPGLKHALFNMDDAWVKALAAKTPAGVSAIG--FSLQEPADVYLRDIHLHA 294

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             +   +       E     +G     N++  +    I  A ++  +  +       GR 
Sbjct: 295 SGASAWLVSPWGEAEFHSPLLGLFNLSNLVAVVSAACIQGAPLEQVLALVPHLVAAPGRM 354

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +      +     ++ +  +   A      + L  I  H   R   V G     G     
Sbjct: 355 QPVVVDADVQEIQVLVDYAHTPDA----LENTLKAIREHQADRIWTVFG----CGGDRDK 406

Query: 388 FHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQ 438
               L   ++     +V ++  +            +   L                 F  
Sbjct: 407 TKRPLMGRIAEKLSDYVIVTNDNPRSEDPARIAADIVRGLNNPNGCLVLADRAQAIDFAV 466

Query: 439 SSLVDGDVVVV--KS 451
                GD+V++  K 
Sbjct: 467 QQAKPGDLVLIAGKG 481


>gi|56696075|ref|YP_166429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
 gi|56677812|gb|AAV94478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ruegeria pomeroyi DSS-3]
          Length = 493

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 148/468 (31%), Gaps = 39/468 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L    +G   G  P   ++G+++DSR +     F A+ G    G DFI +A++ GA 
Sbjct: 8   LSQLALTARG---GRDPD--ISGLAVDSRLVREGFLFAALPGSRVHGGDFIQYALRMGAS 62

Query: 67  LVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            ++ + +      A + +    +  V+D    L   A        AT++A+TG+ GKT+ 
Sbjct: 63  AILTDAEGARIAAAELAASQAALVVVEDPRQTLALTAALWFGAQPATMVAVTGTNGKTSV 122

Query: 123 KEMLTIALSSIKKT-----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGM 169
              +    + +                     +           +   V  G+    +  
Sbjct: 123 STFVRQIWTELGHDAVNLGTTGVEGAWTAPLAHTTPEPITLHRCLAEAVANGVTHAAMEA 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     V    A  T     HL      E   +AKA +F  +     + +   D
Sbjct: 183 SSHGLEQRRLDGVVLKAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLPPDGVAVINMD 242

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                      A   + + + G+    D  L   +  +    +    +GK+ +       
Sbjct: 243 DPKGAEMRAIAAARGQNVLTVGR-GPCDLSLTNQRFDATGQDLLFSWRGKAYQARL---D 298

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                     L    ++ A      +             R + A  +     +   Y+  
Sbjct: 299 LIGGFQAENILLACGLVIASGGAPERVFETLPHLGTVRGRMQLAATRANGAAVFVDYSHT 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P ++  A+     + PH  GR +A++G     G     +   L    ++ N   V ++  
Sbjct: 359 PDAVATALRA---LRPHVMGRLVAIVGA----GGDRDPYKRPLMGKAAVENADIVIITDD 411

Query: 409 ----FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    ++ A+ +               L    +L  GD +++  
Sbjct: 412 NPRSEDPALIRAAVMQGAPGATEVGDRAEAILRGVDTLEPGDALLICG 459


>gi|163751819|ref|ZP_02159035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
 gi|161328304|gb|EDP99465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella benthica KT99]
          Length = 492

 Score =  138 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 153/479 (31%), Gaps = 47/479 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL       +        N IS+DSR+I   + F A+ G   DG  FI  A ++G
Sbjct: 1   MRLSDLL----APWLHYSGPESFNNISLDSRAITAGDLFIAVPGHLVDGRKFIGVAFEQG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA-----LNKLAVAARL--RSKATIIAITGSV 117
           A   +V++D  A  G L +   G   VL       L+ +   A      +  +I +TG+ 
Sbjct: 57  AVAALVHSDDPAEHGRLKLEQTGSPQVLFFQLSQHLSAIGAQAYPLGAHRLKLIGVTGTN 116

Query: 118 GKTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           GKT+  +++   +              + +       G+            +        
Sbjct: 117 GKTSITQLMAQLVALLGKQASLMGTLGNGLWGDLVDSGNTTADPITISAQLQAFNLAGAD 176

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +  + +S  G I+     V   +AV T ++  HL     ++    AK  +F+       +
Sbjct: 177 LCAMEVSSHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFTSLQSGL 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D+   + L  +  A  I        +  A        Q  +     +       ++
Sbjct: 237 INLDDEVGRQWLSEEQSAKHIGFSICSAYADAASIYTLDNHQHDQGVTATLVWPEGQAKL 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +GY    N++  LG + ++  D+     ++       GR +R+             
Sbjct: 297 ASPLLGYFNLSNLVAALGALYLIGYDMRAMAASVPQLKSVAGRMERFTTDNGVTLVVDYA 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L  +  H EG+   + G     G         L    +      
Sbjct: 357 HTPDA-------IEQALKALRGHCEGQLWCLFG----CGGDRDKGKRPLMAQAAEAYADK 405

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   L     V    + +     + +    GD++++  K 
Sbjct: 406 VMVTSDNARSESPEVIIEEILAGLDAPERVLTQVSREKAIRQVVALAKPGDLILLAGKG 464


>gi|152979591|ref|YP_001345220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Actinobacillus succinogenes 130Z]
 gi|150841314|gb|ABR75285.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinobacillus
           succinogenes 130Z]
          Length = 488

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 154/474 (32%), Gaps = 46/474 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L A+ G +   +       + +DSRS+     F AIKG + DG  FI  A+++ A  V+ 
Sbjct: 4   LTALLGLNSPELDGIRFTEMCLDSRSVKTGCLFVAIKGHNVDGRRFIPVAIERHAAAVLA 63

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKE 124
             D  +    +    +IPV    ++   L+++A          +I   +TG+ GKTT  +
Sbjct: 64  ECDNESEHLQVRFERNIPVISYFNLPEHLSEIADKFYDGPSQRLILTGVTGTNGKTTVSQ 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELG 168
           +L      +    A +G+  N  G+   L          I                  + 
Sbjct: 124 LLAQWARILGNIPAVMGTVGN--GLLGQLQSAANTTGSAIEVQSSLARFIEQGADFAAIE 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G ++     ++    + T ++  HL     +   A AK  +F  L     I    D
Sbjct: 182 VSSHGLVQKRIEALKFTAVIFTNLSRDHLDYHGSMTAYADAKKRLFTALPSKYQIINADD 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     L+    A+ +     F   +    +        + + ++         +    I
Sbjct: 242 EVGRTWLQELPRAVAVSCNPDFQPQQKNWLKATALSFTGDGAEIKFASSWGDGVLASRLI 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L+ L  +  L   + T I+ +S      GR +  +             + +A
Sbjct: 302 GAFNVSNLLLVLATLLCLGYPLQTLIRTVSQLRGVCGRMEMLKAVHKPTVIVDYAHTPDA 361

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L     H  G+   + G     G    +    +   ++      V ++ 
Sbjct: 362 -------LEKALQAARTHCRGKLWCIFG----CGGERDNGKRPMMAQIAESLADRVIVTD 410

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +     R  +V      +        S  + DV+++  K 
Sbjct: 411 DNPRTEDPEKIVADITAGFARLKNVQIIHAREAAICAAIQSAAENDVILIAGKG 464


>gi|255261519|ref|ZP_05340861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
 gi|255103854|gb|EET46528.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thalassiobium sp. R2A62]
          Length = 494

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 153/472 (32%), Gaps = 42/472 (8%)

Query: 6   TFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  DL L A  G       +  V G+++DSR +     F A+ G +  G  FI  A+++G
Sbjct: 7   TLSDLGLTASGGR------KADVTGLAVDSREVRDGFLFAALPGSNVHGATFIQTAIERG 60

Query: 65  AGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++ +            +  + V   DD    L   A         T+IA+TG+ GKT
Sbjct: 61  ATAILTDPAGARLAADVPSASDVAVVLADDPRQTLAFAAALWSGGQPNTMIAVTGTNGKT 120

Query: 121 TTKEMLTIALSSIKK-----------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--L 167
           +           +                     +           +      G+    +
Sbjct: 121 SVSTFCRQIWVEMGYAAANLGTTGVEGAWTAPLNHTTPEPITLHRTLAEAASAGVTHAAM 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +     VR   A  T     HL      E    AK  +F  +    +  +  
Sbjct: 181 EASSHGLDQRRLDGVRIMAAGFTNFTQDHLDFHETFEAYFEAKMGLFTRVLGDQSTAVVN 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D       A+        +   G+S++AD QL      +    +    +GK+     + 
Sbjct: 241 LDDPKGPEVAEIAYDLGIDVIGVGRSEHADLQLLAQWFDATGQDLRFDFEGKTYVKRLNL 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+L+   +V    AD D     L       GR +      N      +D ++ 
Sbjct: 301 IGGFQADNVLLAAALVIACGADADEVFDTLPHLTTVRGRMELAATRDNGA-AVFVDYAHT 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +  +       LS + PH  GR IA++G     G    +    L    ++     V+++
Sbjct: 360 PDAVAT-----ALSAMRPHVMGRLIAIIGA----GGDRDATKRPLMGEAAMREADLVFVT 410

Query: 408 G-----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      ++ A +  +             L    +L  GD +++  K 
Sbjct: 411 DDNPRSEDPAVIRTAVMLGAPEATEVGDRAEAILRGVDALRPGDALLIAGKG 462


>gi|299139515|ref|ZP_07032689.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598443|gb|EFI54607.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidobacterium sp.
           MP5ACTX8]
          Length = 504

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 167/477 (35%), Gaps = 41/477 (8%)

Query: 9   DLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++AI G  +          V G+  DSR +   + F A+KG   DG+ FI  A+++GA
Sbjct: 2   QWVEAISGVRVLEAAGSRAIDVRGVQYDSRRVTAGDVFVAMKGGSSDGNRFIDTAMRQGA 61

Query: 66  GLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKT 120
             ++ ++    +      P   V  V+    AL ++  AV  R      + A+TG+ GKT
Sbjct: 62  AAIITDSAETFAALRERQPELAVALVEHGRRALAEVSAAVFGRPEQTLKLSAVTGTNGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------DVDFGIFE-- 166
           TT  +L   L S+ +    +G+   HIG  +  +                 V  G  E  
Sbjct: 122 TTAFLLEQMLRSVGRKSVLMGTIETHIGDQVRESEHTTPESRDVLAVFAEGVRAGCTEVV 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + MS     +     +   +A+ T +   HL     +E    AKA IF G+         
Sbjct: 182 MEMSSHALEQERVWGLPVDVAIFTNLTQDHLDYHGTMEAYFQAKARIFAGVGALPPRVAV 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +    E      H     T+ ++G  +  +++          +  +       + +   
Sbjct: 242 INLD-SEYGDEMCHEFRGATLMTYGMGEFGNYRAENVSLALGDTRFDFVTPEGRIAMHSP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G    +N+L            ++    A  + H   GR +    +   GFF ++D ++
Sbjct: 301 LSGRVNVENLLAASCAALARGLTLEQVAHAAEMLHQVPGRFQVVPGSKAAGFFVVVDYAH 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  +++  I++  +      GR I + G     G              +  +   V +
Sbjct: 361 TDD--ALRNLIALARESVVGHGGRAITLFG----CGGDRDKTKRPKMGRAAGEDSDLVVV 414

Query: 407 SGFHVLA------LKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +      + +AL             E           S   GD+V++  K 
Sbjct: 415 TSDNPRSEEPMTIINEALLGVRETQTTFIVEEDRRAAIEVAIRSAKPGDIVLLAGKG 471


>gi|85712538|ref|ZP_01043586.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
 gi|85693672|gb|EAQ31622.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina baltica OS145]
          Length = 485

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/458 (16%), Positives = 144/458 (31%), Gaps = 46/458 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V+GI +DSR +A  + F A+ G   DG D+I  A+  GA  ++     +    +  
Sbjct: 15  PNVAVSGIKLDSRQVANGDLFVAVPGYVTDGRDYINTAIAAGARAILAEGSSLRYEENGG 74

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                +  V   L+++A          AT+I +TG+ GKT+   +       +  T A I
Sbjct: 75  AVCVFMPGVKEQLSEIAGRFFNHPSRHATLIGVTGTNGKTSVTHLAAQLAEKLGYTAAVI 134

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184
           G+  +  G+   L          +                  + +S    ++     +R 
Sbjct: 135 GTTGS--GLIGQLLPEKHTTPDAVTVQQRLSTLVAEGADFIAMEVSSHALVQRRVEALRF 192

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV T I+  HL     +     AK  +FE  E    +    D      L+        
Sbjct: 193 DTAVATNISRDHLDYHGSMAHYVDAKRRLFEDFELNHRVINLDD----RYLRDWLEGASN 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S      A+ Q+         +   +  +G+  +     +G     N++  + I+ 
Sbjct: 249 GLSISLQGHSRANIQVSDLAFAEHGTTFTLAYEGREAQFSTPLLGRFNVYNVVSAVAIML 308

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +    +      P  GR + ++   +         + +A          VL  + 
Sbjct: 309 AQKQSLTAIAQHCRHLSPVPGRMEAFQAGSSALVVVDYAHTPDA-------LQQVLQALR 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
            H +G+   V G     G             ++      V ++  +            + 
Sbjct: 362 LHCKGKLWCVFG----CGGDRDRGKRPQMGQVAAEFADRVVVTDDNPRTEAPQQIIADIM 417

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +     VH  E      L         DVV++  K 
Sbjct: 418 AGIADKRKVHSMEGRRQAVLDTIERAAPDDVVLLAGKG 455


>gi|320527296|ref|ZP_08028481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
 gi|320132320|gb|EFW24865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Solobacterium moorei
           F0204]
          Length = 489

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 157/456 (34%), Gaps = 40/456 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP   +  +  DSR   P   FF +KG   DGH+ I  A+  GA ++V +  +     +
Sbjct: 9   NVPDIEIKSLMDDSRKKRPNSIFFCVKGLVNDGHEHIDEAIANGAIVIVHSEPI--EKIN 66

Query: 81  LSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             I    V DV+   N++A +         T+  +TG+ GK++   ++   L+ I+ T  
Sbjct: 67  PDITYIKVKDVVHVFNQVADSFYDYPSHHMTMYGVTGTNGKSSVAWIIRNILNQIEPTAY 126

Query: 139 CIGSYNNHIGV-------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                  +  V                + R  VD          S +   +     +   
Sbjct: 127 VGTISIEYNNVKLPPLVASPNIDEVHGILRDMVDAGIKNCAYEASSIAIDQGRLDAIDFD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+ T +   HL     +    +AK ++F+ L++     +N DD     +   + A    
Sbjct: 187 VAIFTNLTHDHLDYHGTMTNYFNAKKKLFDQLKEEAIAIVNVDDPSGMKIVQDTQA---- 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            ++++G    AD+++  +    + +   + +      +  + I      N++  +  +  
Sbjct: 243 KVFTYGIDYEADYRVTDYHLLKDSTRFTLHINDHDYRLETNLIARFNIYNLVAAIAAIHQ 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +D     +   +  EGR +R +             + +         I  + Q + 
Sbjct: 303 KGVSMDDIASYIQHLNQVEGRMERIQDGQPFNLIVDFAHTADG--------IEKVCQYAS 354

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420
               +   ++      G+   +    +   +  +    + L+     G  V  + + + +
Sbjct: 355 SITPKDCRIIAITGSAGKR-DTAKRPIFGEILDHYCDMIILTEDDSRGESVREIAEDIAK 413

Query: 421 SIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            IH       E              +GD ++V  K 
Sbjct: 414 GIHHKNYVIIEDRYDAIRQSVELCSEGDTILVLGKG 449


>gi|289547851|ref|YP_003472839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
 gi|289181468|gb|ADC88712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermocrinis albus DSM
           14484]
          Length = 457

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 148/454 (32%), Gaps = 52/454 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GI+ +S+ +     F AI+G + DGH F+  A+++GA  V V  D+          +
Sbjct: 2   EVKGITHNSKEVYEGYIFVAIEGTNTDGHQFVEEALRRGAIRVYVEKDVGIEDP----RI 57

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D    L +L      R   K  +I +TG+ GKTTT  +L     +       IG+ 
Sbjct: 58  VKVSDTRKLLGELCHEFYGRPSEKLQVIGVTGTNGKTTTTHILESVFRTAGIKVGLIGTI 117

Query: 144 NNHIGVPLTLAR--------MPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAV 188
              +G  +                    + E         +S     +      +    +
Sbjct: 118 YYRLGDKVYRYEGRTTPDPVEWHSTLKAMLEDGAQVVCAEISSHALHQRRVWGTKFFTTI 177

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   SAK  +F    +  ++    D         +  ++  K   
Sbjct: 178 FTNLSQDHLDYHGDMENYFSAKLLLFTQYPQEFSVINADDPYG-----KRIVSVVGKRAR 232

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++GK    D ++  ++   E S +EV+ +GK      H  G   A N+   +    +   
Sbjct: 233 TYGK--EGDLRITNFETSLEGSRLEVEYEGKRYRFFSHLRGEFQAYNLSAAILTAFLRGI 290

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     + +             +         ++D ++  +         +L        
Sbjct: 291 DPQVVEEGVKDVRVPGRFETYRKDGKT----VIVDYAHTPDALE-----KLLRTARGITR 341

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALP 419
           GR + V G     G         L   ++      + L+  +            + + + 
Sbjct: 342 GRLLVVFGA----GGNRDRTKRPLMGEVAQNWADVIVLTSDNPRWEDPISIIEDIMEGIS 397

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   V      +           +GDVVV+  K 
Sbjct: 398 QKNKVLVEPDREKAIRLAVEMAKEGDVVVIAGKG 431


>gi|146295954|ref|YP_001179725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409530|gb|ABP66534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 488

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/485 (14%), Positives = 156/485 (32%), Gaps = 57/485 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++  S+++    AF  IKG   DGH++I  A+++GA L++V+     S     +
Sbjct: 21  DEDIKDVAYSSKNVEDGFAFICIKGFKTDGHEYIDEAIERGAKLIIVDEFYDTSKLKDKV 80

Query: 84  PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 +   AL+ ++            +I +TG+ GKT+T  M+   L         IG
Sbjct: 81  LFIKTSNTRKALSVISANFFEHPSKNFLLIGVTGTNGKTSTTFMIKSILEQSGHKVGLIG 140

Query: 142 SYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +  N IG               +      M  +    +  + +S               +
Sbjct: 141 TVKNMIGQKEIEAKHTTPESYDLQKLFFEMKKENVDSVV-MEVSSHSLELHRVDCCDFDV 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V T +   HL     +E   +AK ++F   E +    +N DD +   +           
Sbjct: 200 GVFTNLTQDHLDFHGTMENYFAAKLKLF---EMSKKRVVNVDDEWGRKIIRIYPDS---- 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             ++G +  AD      K    ++      Q  +       +      ++   L   S  
Sbjct: 253 -VTYGINSKADVCAMSVKLYVNKN-QFELRQLDNDNKEQVTLNIPGIFSVYNALAAASCA 310

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A         +     +    R+    +   FT++ +  +         ++++  +   
Sbjct: 311 YALGIDLKTIKAGLESVKAIPGRFEIVESNDKFTIVIDYAHTPDG----LLNLMKTVDEV 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDAL-- 418
            +GR++ + G     G         +   ++      V ++  +      +  ++D L  
Sbjct: 367 AKGRKVLLFG----CGGDRDRTKRPIMGEIAGKMADFVIVTSDNPRTEDPIKIIEDILVG 422

Query: 419 --PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS--------SNSCGFY--RLINLL 464
               +              +   +  + D +V+  K           +  F    ++  +
Sbjct: 423 LQKTNAEYVVIPDRFEAIKYAIKNAKENDFIVLAGKGHETYQILKDRTIHFDEREVVRSI 482

Query: 465 LEEFP 469
           LEE  
Sbjct: 483 LEELK 487


>gi|237744234|ref|ZP_04574715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
 gi|229431463|gb|EEO41675.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 7_1]
          Length = 485

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               ++++   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134

Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V                    +   +++ + E+  S          ++    A
Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD++ + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDEFIVDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + + +        +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALNCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   +       + L+  +            +K   
Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449


>gi|256027898|ref|ZP_05441732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289765847|ref|ZP_06525225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
 gi|289717402|gb|EFD81414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D11]
          Length = 485

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 155/453 (34%), Gaps = 46/453 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               NGI  DSR I     F A +G + DGHD+I  AV+ GA  ++V+ ++       ++
Sbjct: 18  DRKYNGIEYDSRKIKENYIFVAFEGANVDGHDYIDSAVKNGATCIIVSKEVEMKH---NV 74

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               ++++   L  +A       + K  II +TG+ GKT++  M+   +  I  T     
Sbjct: 75  SYVLIEEIRHKLGYIASNFYEWPQRKLKIIGVTGTNGKTSSTYMIEKLMGDIPVTRIGTI 134

Query: 142 SYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            Y     V                    +   +++ + E+  S          ++    A
Sbjct: 135 EYKVGDEVFDAVNTTPESLDLIKIFDKTLKKKIEYVVMEV--SSHSLELGRVDVIDFDCA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E    AK ++F  L+      +N DD++ + L  +      + I
Sbjct: 193 LFTNLTQDHLDYHLTMENYFQAKRKLFLKLKDKNDSVINIDDNYGKRLYDEFIVDNPEII 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  + + +        +  +++++ + +  +V    +G     N L  +GI   + 
Sbjct: 253 SYGIDGGDLEGE------YLDDGYIDIKYKEQVEKVKFALLGDFNLYNTLGAIGIALKIG 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++  +K +S      GR +   C  +          Y   P ++   I     I    
Sbjct: 307 ISMEEILKRVSNIKAAPGRFEALDCGQDYKVIVD----YAHTPDALVNVIVAARNI--KN 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R I + G     G         +   +       + L+  +            +K   
Sbjct: 361 VNRIITIFG----CGGDRDRTKRPIMAKVVEDLSDIIILTSDNPRTENPEQIFTDVKKGF 416

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S    +    +       +     D++++  
Sbjct: 417 IKSDDYIFEPDREKAIKAAVNMAEKNDIILITG 449


>gi|295696467|ref|YP_003589705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
 gi|295412069|gb|ADG06561.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus tusciae DSM
           2912]
          Length = 500

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 91/485 (18%), Positives = 153/485 (31%), Gaps = 56/485 (11%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               DL+ A+     +G +    V  ++ DSR+  P   F A++G   DGH F+  A + 
Sbjct: 1   MRLQDLVSALLHVRVVGEISAVEVTDVTADSRTAGPGSLFIALRGHTVDGHAFVDEARRS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA   VV            +P   V D   A   LA            +I +TG+ GKTT
Sbjct: 61  GAVAAVVE-----DCLDTPLPQIVVPDTRRAAAVLAAVFFRHPSRAMRVIGVTGTNGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPV-DVDFGIF 165
              ++   L +       IG+    IG               +    A+M    V   + 
Sbjct: 116 VTHLIDHLLRAGGARTGLIGTIQTRIGDRSSGAVNTTPEAVELQRLFAQMRDAGVSHAVM 175

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTG 221
           E+  SH  E+  +    R H AV T +   HL     +E          A +      T 
Sbjct: 176 EV-SSHALELDRV-AGTRFHTAVFTNLTQDHLDFHGSMEAYREAKGKLFARLGNEYGDTR 233

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  + +             ++G  + AD + R+ +  +       +++G+  
Sbjct: 234 ADQAFAVVNLDDPVGKWMARQTTAQTVTYGVDRPADLRAREVEVDTRGVRFVAEIEGRRT 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N L  +G   I   D+D     L+      GR +R       G    
Sbjct: 294 RVHVPLPGRFSVYNTLAAMGAGWIQGLDLDWMADQLARVSGVPGRMERVDAGQPFGVVVD 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P S+   +  L +++    GR I V G     G         L   ++    
Sbjct: 354 ----YAHTPDSLDNVLQALREVAS---GRLIVVFG----CGGDRDRTKRPLMGRIAYTRA 402

Query: 402 SHVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +  L+  +                L++    +                     + DVV+
Sbjct: 403 DYAILTSDNPRTEDPERILDDIEAGLREIGADTSRYERISDRTEAIRRAIHLAGEKDVVL 462

Query: 449 V--KS 451
           +  K 
Sbjct: 463 IAGKG 467


>gi|163746123|ref|ZP_02153482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
 gi|161380868|gb|EDQ05278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanibulbus indolifex HEL-45]
          Length = 493

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 151/461 (32%), Gaps = 36/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74
           G +        + GI++DSR +     F A+ G    G +FI +A++ GA  V+ + +  
Sbjct: 12  GLTARAGANPMITGIAVDSREVREGTLFAAMPGSRVHGAEFIQYALRMGAAAVLTDAEGA 71

Query: 75  ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                ++   +  +   D    AL + A        AT+IA+TG+ GKT+    +     
Sbjct: 72  KIAAEALAGSNAALVVSDSPREALARTAALWFGGQPATMIAVTGTNGKTSVSTFVRQIWV 131

Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
            +            +        +           +      GI    +  S  G  +  
Sbjct: 132 EMGLPAVNLGTTGVEGAWAAPLAHTTPEPITLHRTLAEAARNGITHAAMEASSHGLDQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      E   +AKA +F  +       +   D    +  A 
Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFEAYFAAKAALFARVLPEDGTAVVNIDDEKGIDIAA 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + + G+    D  L+  +  +    +    +GK+ +   + IG     N+L+
Sbjct: 252 IARARGCEVITVGR-DGGDLHLQGQRFDATGQDLRFTWRGKTYQKRLNLIGGFQGDNVLL 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    AD       L       GR +      N      +D ++  +  +      
Sbjct: 311 AAGLVIACGADAQEVFDTLPHLTTVRGRMQLAATRDNGA-AVFVDYAHTPDAVAT----- 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            LS + PH  GR +A++G     G         L    +  N   V ++          +
Sbjct: 365 ALSAMRPHVMGRLVAIVGA----GGDRDRVKRPLMGQAAAENADMVIVTDDNPRSEDPAS 420

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ A L  +             L    +L  GD +++  K 
Sbjct: 421 IRAAVLSGAPDAWEVGDRAEAILRGVDALEPGDALLIAGKG 461


>gi|288818505|ref|YP_003432853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787905|dbj|BAI69652.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752095|gb|ADO45578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobacter
           thermophilus TK-6]
          Length = 463

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 157/453 (34%), Gaps = 52/453 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V GI+ +S+ +     F AIKG   DGH+F+  A+ +GA  V+V  D+    G     + 
Sbjct: 7   VKGITDNSKEVKEGYIFVAIKGSQNDGHNFVKEALSRGAKWVLVEKDV----GITDNRIV 62

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL +L  A   +   K  +I ITG+ GKTTT  ++   L++       +G+  
Sbjct: 63  KVKDTREALGELVSAFYGKPSKKLKVIGITGTNGKTTTTHIVEALLNAGGIKTGLVGTIY 122

Query: 145 NHIGVPLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLVRPHIAVI 189
             +   +            ++                  +S     +        HI   
Sbjct: 123 YRLMDKIYEYEGRTTPHPAVWHATLKKMLEDGAQALVAEVSSHALDQKRIWATHFHIVGF 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +EE   AK  +          +     +  +    +          +
Sbjct: 183 TNLSHDHLDYHKSMEEYFKAKLRL-----FKEYTYEYAVVNSDDEYGKRIVRELKGRAIT 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+    DF++  +    E S ++V  +GK+ +   + +G   A N+ + +    ++  +
Sbjct: 238 YGR--EGDFKILDFDTGFEGSKLKVAYEGKTYKFYSNLVGDFQAYNLALGILCCMLVGIE 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V    + L           R+      GF  ++D ++  +        +VL  I     G
Sbjct: 296 VQAIEEGLKK----VYVPGRFETYRGDGFLVIVDYAHTPDALE-----NVLKSIRRLSTG 346

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPR 420
           R I + G     G         +   ++      + ++  +         +  +   +  
Sbjct: 347 RVITLFGA----GGNRDRTKRPIMGSVAEKWSDLLVITSDNPRDEDPMDIIRDILQGVKD 402

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V   E          S   +GD V++  K 
Sbjct: 403 TSKVLVEEDRKKAIKMAISLAEEGDTVLIAGKG 435


>gi|294506457|ref|YP_003570515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
 gi|294342785|emb|CBH23563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinibacter ruber M8]
          Length = 522

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 164/473 (34%), Gaps = 46/473 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            DLL      +    P    + G++ DSR++ P   F AI+G   DGH FI  AV  GA 
Sbjct: 42  ADLLDETIAGAEAPDPDTLAIGGLTDDSRAVTPGGGFVAIRGVDADGHSFIDMAVDNGAR 101

Query: 67  LVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           LVV       A      +    V D   AL + A A       +  ++ +TG+ GKTT  
Sbjct: 102 LVVCEALPTRARERFPGVVFARVTDTRTALAEGAAALHGDPADEMRLVGVTGTNGKTTVA 161

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGM 169
            ++   L ++ +T   + +     G              V     R  VD       + +
Sbjct: 162 YLVHHLLEALGETAGLLSTIEVRAGGETTAPALTTPGPLVLHRTLRRMVDRGCTACAMEV 221

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +   H +   +A+ TT++  HL     +++  +AK  +F+ L    T   N DD
Sbjct: 222 SSHALDQDRVHGLDYEVAIFTTLSVDHLDYHDTLDDYRAAKKTLFDALGPDATALYNTDD 281

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                + A + A     + SFG  ++AD +    +   +       ++    E      G
Sbjct: 282 EAGPTMVADTEA----RVVSFGLDRDADIEATVLEARLDGQR----VRLDGHERDTQLAG 333

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A NM    G  + L    +    AL+   P  GR +  R              Y   
Sbjct: 334 RFNASNMAAAYGTGTALGHVPEAVADALADAPPVPGRVEPLRFEDGTTVIID----YAHT 389

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++  +  +   +P        V G     G    +        ++      V ++  
Sbjct: 390 PDALENVLRTVRDTTPAKAALWC-VFG----CGGDRDAGKRPTMGRIAERLADRVIVTSD 444

Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            ++D + R   + +    +          + GDVVV+  K 
Sbjct: 445 NPRTEAPVAILRDIRDGVERPESMRWIVDREEAIQAAADETMPGDVVVIAGKG 497


>gi|160891416|ref|ZP_02072419.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
 gi|156858823|gb|EDO52254.1| hypothetical protein BACUNI_03866 [Bacteroides uniformis ATCC 8492]
          Length = 462

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 89/455 (19%), Positives = 152/455 (33%), Gaps = 48/455 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G++IDSR I     F A++G   DGH +I  A+ KGA  V+     +       I  
Sbjct: 2   EITGVNIDSRLIGTGHLFMAMRGTQTDGHAYIPAAIDKGAVAVLCEE--LPEELKAGITY 59

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSS----------- 132
             V D   A+ K+A        SK  +I +TG+ GKTT   +L                 
Sbjct: 60  IQVKDSEDAVGKVATTFYGDPTSKMELIGVTGTNGKTTVATLLYNTFRYFGYKVGLVSTV 119

Query: 133 IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                       +    P+TL R+     D       + +S     +     ++    + 
Sbjct: 120 CNYIDDQPVPTEHTTPDPITLNRLLGEMADSGCKYAFMEVSSHSIAQKRISGLKFAGGIF 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E    AK + F+ L K      N DD    ++   + +     +Y+
Sbjct: 180 TNLTRDHLDYHKTVENYLKAKKKFFDELPKGAFSLTNLDDKNGLVMTQNTRS----KVYT 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +     +DF+ +  +   E     + L   + E+    IG   A N+L   G   +L   
Sbjct: 236 YSLRSLSDFKGKVLESHFEG----MLLDFNNHELAVRFIGKFNAYNLLAVFGTAVLLGKK 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  + ALS  HP  GR    R              Y   P ++   ++ +  +   G+G
Sbjct: 292 EEDVLVALSTLHPVTGRFDAIRSPKGYTAIVD----YAHTPDALVNVLNAIHGV-LEGKG 346

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           + I V+G     G         +    S      V ++  +            +   L +
Sbjct: 347 KVITVVGA----GGNRDKGKRPIMAKESARLSDRVIITSDNPRFEEPQDIINDMLAGLDK 402

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                    GDV++V  K 
Sbjct: 403 DDMQKTISITDRREAIKTACMLAQPGDVILVAGKG 437


>gi|163732138|ref|ZP_02139584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
 gi|161394436|gb|EDQ18759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter litoralis Och 149]
          Length = 493

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/471 (16%), Positives = 150/471 (31%), Gaps = 41/471 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L     G +     Q  + G+++DSR +     F A+ G    G +FI +A++ GA
Sbjct: 7   TLSQL-----GLTARDGRQAALTGLAVDSRDVKDGYLFAALPGSRIHGAEFIQYALRMGA 61

Query: 66  GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++ +          +G+    +   DD   AL + A         T+IA+TG+ GKT+
Sbjct: 62  SAILTDIVGARLAATELGASDAALVISDDPREALARTAALWFGAQPKTMIAVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKT-----------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LG 168
               +    + +                     +           +      G+    + 
Sbjct: 122 VATFVRQIWTLLGHEAINLGTTGVEGAWSAPLAHTTPEPITLHRALAEAAREGVTHAAME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V    A  T     HL   +  E+  +AKA +F  +       +   
Sbjct: 182 ASSHGLDQRRLDGVTLAAAGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDAKAVINI 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    +  A         + + G+  + D  L   +  +    +     GK        I
Sbjct: 242 DVDRGVDMAAIAKARNCPVITVGR-DSGDLHLGNIQVDATGQVVCFMHHGKQYVRRLGLI 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A+N+++   +V     +       L       GR +      N      +D ++  
Sbjct: 301 GGFQAENVMLAAALVIACGEEPPHVFDTLEHLSTVRGRMQLAGTRDNGA-TVFVDYAHTP 359

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  +       L  + PH  GR IA++G     G    +    L    +  N   V+++ 
Sbjct: 360 DAIAT-----ALKALRPHVVGRLIAIVGA----GGDRDATKRPLMGQAAAENADVVFVTD 410

Query: 409 FHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +          L  +             L    +L  GD +++  K 
Sbjct: 411 DNPRSEDPATIRAAVLLGAPEAIEVGDRAEAILRGVDALGPGDALLIAGKG 461


>gi|319649882|ref|ZP_08004033.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
 gi|317398462|gb|EFV79149.1| hypothetical protein HMPREF1013_00637 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 155/466 (33%), Gaps = 32/466 (6%)

Query: 5   WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                +++ +   G          + GI +DSR +     F AIKG   DGH FI  AV+
Sbjct: 1   MKLSQVIKCLKDSGEMDVFTNDPEIRGIEMDSRKVRKGSLFVAIKGFQTDGHHFIGQAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            GA  VV    +      L++P   V D   +L KLA     R   K  II ITG+ GKT
Sbjct: 61  NGAAAVVGEEAL-----ELNVPYIKVTDSRTSLGKLASCFYDRPSRKHKIIGITGTNGKT 115

Query: 121 TTKEMLTIALSSIKKTY-----------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           TT  +L   L +  +T                  +N     L + +M          + +
Sbjct: 116 TTAYILKHILETAGRTCSLLGTVSNIINNREYKTSNTTPDALQIQKMLSKSLDEFVVMEI 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +  T  +     + T +A  HL     +++    K +IF  L+  G   +N  +
Sbjct: 176 SSHALEQSRTEGLELDYGLFTNLAHDHLDYHENMDQYFLDKKKIFTLLKDGGKGVINLYN 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           S+ E +        I  I       +      K    + ++   ++++G+S E+     G
Sbjct: 236 SWGEKMAEDLQKEKIPLI----LLGDDQCCSIKDVAINGRTVFILEMKGQSFEIEFPLPG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           +H   N  M       L  D    IKAL+ F    GR +         F      + +A 
Sbjct: 292 HHNVYNAAMAFLTGVDLGIDTADIIKALAGFPGIPGRFETIIHPSGAKFVVDYAHTVDAF 351

Query: 350 PA----SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 + +     + QI     GR  +   DM +            A+ L+  +   + 
Sbjct: 352 EYCLEAARQQGAERIFQIYGFRGGRDQSKRMDMIKASAKYCHKFYLTADDLNDESEDEMI 411

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                +  L                            + D + +  
Sbjct: 412 ---SQLHRLNKEFGCGK-GEVIPDRTLAIQKAWREAGESDWIFITG 453


>gi|301053716|ref|YP_003791927.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis CI]
 gi|300375885|gb|ADK04789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 250

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 8   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHEYVKEAMD 65

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 66  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G         
Sbjct: 124 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 184 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 229


>gi|261867475|ref|YP_003255397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412807|gb|ACX82178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 488

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 152/466 (32%), Gaps = 46/466 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     +  +++DSR+      F AIKG   DG  +I  A++ GA  V+   D     
Sbjct: 10  IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALRNGASAVIFEADSAQQH 69

Query: 79  GSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
             +     IP+     +   L++LA           T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176
           +  T A +G+  N  G+   +          +                  + +S  G ++
Sbjct: 130 LGHTGAVMGTIGN--GLFGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V    AV T ++  HL     +E  A+AK  +F  L+    I    D      L 
Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQIIDADDPVGAVWLA 247

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              HA+ +     F   +    +    +   + + ++ +    + E+    IG     N+
Sbjct: 248 EMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+    +  L   +   I ++       GR +                + +A        
Sbjct: 308 LLVTATLLTLDYPLSGLINSVHKLTGVCGRMEMLHTPQKPTVIVDYAHTPDA-------L 360

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
              L     H  G+   + G     G    S    L   ++     HV  +  +      
Sbjct: 361 EKALQAARLHCRGKLWCIFG----CGGDRDSGKRPLMAKIAEQLADHVIATDDNPRTEEP 416

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +       V               S V+ DV+++  K 
Sbjct: 417 KKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462


>gi|269837253|ref|YP_003319481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786516|gb|ACZ38659.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 513

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 150/484 (30%), Gaps = 55/484 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL+QA+   S G      V  +  DSR   P   F A++G + DGH F+  A  +GA  
Sbjct: 7   SDLIQALPVTSSGGDLGTVVTDVCYDSRLARPGSLFVAMRGGYTDGHRFLADARARGAVA 66

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
            +V +               V +   AL  +A     R      II ITG+ GKTTT  +
Sbjct: 67  ALVESWEPDLANYP--AYAAVPNTRAALPLVAATFFGRPAEALGIIGITGTDGKTTTSYL 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------------DFGIFEL 167
           +   L S       IG+    +G  +                           D+ + E 
Sbjct: 125 VDAMLRSAGYRTGLIGTIAVRVGDEIVDHDTRQTTPESLDVQRLLAQMREARVDWAVLE- 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTI 223
             +  G            + V+T I   HL     IEE     A     +     +    
Sbjct: 184 -ATSHGLALHRLDECAFDVGVVTNITHEHLEFHGTIEEYRRAKARLLERVAGRGPRPYPG 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  +            A     ++   K   AD Q    +  ++ +   +     S+ V
Sbjct: 243 GVVLNRDDEGARAIAEAAGTAPVLWFSAKGAPADLQADDVQLAADGTSFRLTTPRGSVPV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + IG +   N L   G+  +L    +   + L       GR    R       +T+I 
Sbjct: 303 RLNLIGAYNVDNALAAAGVGHLLGLSPEAIARGLESLAGVPGR---MRRVDLGQPYTVIV 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P S++ ++ +L  + P   GR IAV G   E           L   +S      
Sbjct: 360 D-YAHTPDSLEKSLRLLRSLVP---GRVIAVFGSAGE----RDRAKRPLQGAVSARLADF 411

Query: 404 VWLSGFHVL-------------ALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV 449
              +                    +DA       +   E               GD V++
Sbjct: 412 SVFTSEDPRFEDPDAIIAEIAAGARDAGAVEGRDYVCIEDRRAAIRAALDWARPGDGVLL 471

Query: 450 --KS 451
             K 
Sbjct: 472 AGKG 475


>gi|237709501|ref|ZP_04539982.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
 gi|229456557|gb|EEO62278.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +      ++    V+D    + KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK   F+ L KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     ++++     +DF+ +  +   E     + L   ++EV    I
Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V+G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|212692812|ref|ZP_03300940.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|237724905|ref|ZP_04555386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. D4]
 gi|212664601|gb|EEB25173.1| hypothetical protein BACDOR_02311 [Bacteroides dorei DSM 17855]
 gi|229436643|gb|EEO46720.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides dorei 5_1_36/D4]
          Length = 484

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPGHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +      ++    V+D    + KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK   F+ L KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     ++++     +DF+ +  +   E     + L   ++EV    I
Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V+G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|258514337|ref|YP_003190559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778042|gb|ACV61936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 498

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/475 (17%), Positives = 148/475 (31%), Gaps = 46/475 (9%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++LQ+++  S G   +  + GI+ DSR   P   F A++G   DGHD+IL AV  GA  V
Sbjct: 5   EILQSVEVLSAGGNSEIQLTGIAYDSRQANPGFLFVAVEGFQTDGHDYILDAVNNGAVAV 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEML 126
           ++  DM+       I    V D   AL  L+            +I +TG+ GKTTT  ++
Sbjct: 65  ILQKDMILPDY---IAWARVPDSRKALALLSARFYNYPSRRLKMIGVTGTNGKTTTAHLI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFELGMSHL 172
                +       IG+  N IG  +   +                +     +  + +S  
Sbjct: 122 ESVYRAAGHRTGLIGTCYNLIGEEIFEVKHTTPESTDLQSLLSAMLKAGVEVVAMEVSSH 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDS 230
                        IAV T +   HL     +E+   A +        +           +
Sbjct: 182 ALNLHRVDGCEFDIAVFTNLTQDHLDFHENMEDYLAAKSILFSGLQGDGGKNGAKYAIIN 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +   A+   L    + ++G  K AD         ++ +   V  +   + +  +  G 
Sbjct: 242 ADDEAAARLTRLSGGQVITYGMVKKADIIAENITVRADGASFTVASRQGKVTINLNLTGK 301

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L    +  +          AL       GR +      +         + +   
Sbjct: 302 FNVYNALAAYSVGMVSGFSPQVIKHALEGVKGVPGRFELVDEGQDFAVIVDYAHTPDG-- 359

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  ++L+       G+ I V G     G         L   +S        ++  +
Sbjct: 360 -----LRNILNTAREFTAGKLINVFG----CGGDRDRTKRPLMGEISGRLSDFTIVTSDN 410

Query: 411 VLA------LKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L     V                    +    GDVV++  K 
Sbjct: 411 PRREDADRIILDILVGISRVVERDYYTIISDRRAAIKAALAQAASGDVVIIAGKG 465


>gi|309379060|emb|CBX22362.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 492

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDEYGAELVGRLKKDCPDLVVYSYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++G +         + D LP   +    E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464


>gi|302339384|ref|YP_003804590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636569|gb|ADK81996.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 142/480 (29%), Gaps = 45/480 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   +   I   +        ++G+S DSR+    + +FA+ G H DGH F+  A+  GA
Sbjct: 4   SLSAITGDINIEARNGKTDALISGLSYDSRTTCRGDLYFALPGLHADGHAFVEQAIAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
             V+    +  S+    I    V +   +++ +A A          +I +TG+ GK++T 
Sbjct: 64  RAVI--HQVPLSLYHPEIAYLQVTNSRISMSPVAAAFYDHPSRVLKVIGVTGTDGKSSTV 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD------------------FGIF 165
             L   L+ +      + +   + G                                 + 
Sbjct: 122 SFLHQLLTGMGLKCGFLSTVQFNTGGESVKNHFRQSTPEATEIHKTLRAMVEAGCSHAVI 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     L         +    AVIT I+  HL     +E+    KA +F    +   I +
Sbjct: 182 ESTSHGLSPKNNRLGDICYDAAVITNISHEHLEFHGTMEQYMDDKANLFRMTGQNRGIAV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D     L A + +      +             +  + +  S        K    V 
Sbjct: 242 INIDDKNHNLFAGTASGCRSISFYSATGAQKADYRARGIEETPASIAFTLDSPKGEARVD 301

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      + ++      +   +         +F   +    R         F +I + 
Sbjct: 302 LNVAGRFNVDNILAASAA-VCELEGVEPKTLEPLFPGLKAVKGRMVPVDEGQAFQVIVDY 360

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A       +   I P   GR  A+     E           +   ++      + 
Sbjct: 361 AHTPGA----FRRLFPAIRPLVRGRLFALFSSAGE----RDLEKRPVLGSIADEYCDVIV 412

Query: 406 LS-----GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+     G + +AL + +            +   E          S +   D +++  K 
Sbjct: 413 LADEDPRGENPMALLEEVASGCRNKTKGKSLFLIENRKEAMRHAFSMMKKDDCILLLGKG 472


>gi|254488130|ref|ZP_05101335.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
 gi|214044999|gb|EEB85637.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter sp. GAI101]
          Length = 493

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 149/461 (32%), Gaps = 36/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        + G+++DSR +     F A+ G    G +FI +A++ GA  V+ +    
Sbjct: 12  GLTAKGEANPLITGLAVDSRQVKEGYLFAALPGSTVHGAEFIQYALRMGAAAVLTDATGA 71

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           A    L     + V   D    AL + A        AT+IA+TG+ GKT+    +     
Sbjct: 72  AMAADLMASAGVAVIVTDAPREALARSAALWFGAQPATMIAVTGTNGKTSVSTFVRQIWI 131

Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
            +            +        +           +      GI    +  S  G  +  
Sbjct: 132 EMGLSAVNLGTTGVEGAWTAPLAHTTPEPITLHRALAEAAANGITHAAMEASSHGLDQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL   +  +    AKA +F  +       +   D    +  A 
Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHATFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGIDMAA 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + S G+    D  L   +  +    +    +GK+ +   + IG   A N+L+
Sbjct: 252 IARARGCEVLSVGR-DGGDLHLTGQRFDATGQDLRFDWRGKTYQKRLNLIGGFQADNVLL 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    A        +       GR +      N G    +D ++  +  S      
Sbjct: 311 ACGLVIACGAKPADVFDTIPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIST----- 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  + PH  GR +A++G     G    +    L    +  +   V+++  +  +     
Sbjct: 365 ALKAMRPHVMGRLVAIVGA----GGDRDTTKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  +             L    ++  GD +++  K 
Sbjct: 421 IRAAVIAGAPDATEVGDRAEAILRGIDAIGPGDALLIAGKG 461


>gi|116750885|ref|YP_847572.1| UDP-N-acetylmuramyl-tripeptide synthetases [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699949|gb|ABK19137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 504

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 141/489 (28%), Gaps = 64/489 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+ ++           V GI+ DSR I     F A+ G   DG+ FI  AV+ GA 
Sbjct: 5   LNNLLRDVEILQTAGPLDVPVTGIAYDSRRIQAGNVFVALPGVRVDGNRFIPEAVRSGAS 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAIT---------- 114
            V+  T   +        V  V D   A+ ++A            +I +T          
Sbjct: 65  AVITETVGFSECP---ATVVRVSDSRKAMARMAANYYGHPCAGLKMIGVTGTNGKTTTTL 121

Query: 115 --------GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
                   G         +     +  K          +  G+   +      V   + E
Sbjct: 122 LLESILKRGGHSVGVLGTLFYRWGAKSKTAGMTTPESLDLQGLFYEMRE--DGVTHVVME 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFL 225
           +  SH      +        AV T ++  HL     +E+  A+      E L       +
Sbjct: 180 V-SSHALAQGRVAECA-FDAAVFTNLSQDHLDYHVTMEDYFAAKSLLFSEYLRTGSVAVI 237

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L  K    G         S+ A   ++  +  +      +     SM++  
Sbjct: 238 NGDDPYGARLVEK---AGPGAWSYSTGSEAARAHVKSARLTASGIEARLCGPDGSMDIHS 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG     N+L  +     +        + ++     +GR +R       GF  ++D +
Sbjct: 295 PLIGRLNLYNILAAVTASLAMGVPEAAIREGVAGLTSVDGRLQRVASPGT-GFEVVVDYA 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          L  +     GR + V G     G         L   ++      V 
Sbjct: 354 HTPDAME-----KSLGCLREMTAGRLLVVFG----CGGDRDRGKRPLMGKVAGALGDLVI 404

Query: 406 LSGFHVLA----------------------LKDALPRSIHVHYSE-TMDGLFLFIQSSLV 442
           ++  +  +                      L          +  E           +   
Sbjct: 405 VTSDNPRSEVPERIIDEIEPGVRASGLERILAAEPGNGARGYIVEVDRKSAIEKALAWAR 464

Query: 443 DGDVVVVKS 451
            GD V +  
Sbjct: 465 PGDTVFIGG 473


>gi|262195184|ref|YP_003266393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
 gi|262078531|gb|ACY14500.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haliangium ochraceum DSM
           14365]
          Length = 1035

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 97/232 (41%), Gaps = 30/232 (12%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++  A  G            + + ID R +AP + + AI+G  +DGH F   A   GA
Sbjct: 500 LAEMAAAAGGVLHAPEGCAEAASRVVIDGRQVAPGDLYVAIRGEQHDGHAFCEQAANAGA 559

Query: 66  GLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--------------- 107
             ++V        A+  +L + V  VDD   AL  +A   R R                 
Sbjct: 560 CALMVERGRAPRDAAGNALKLAVIEVDDTRLALGSVARWHRARWGELPVYGCPNTGGDRD 619

Query: 108 -----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
                        ++ ITGS GKTTTKE++  ALS+    +A   S+NN  GVPLTL  +
Sbjct: 620 GDNGDERARAAKPVVGITGSAGKTTTKELIAAALSARYAVHATRASFNNETGVPLTLLAL 679

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                  + E+GM  LG+I +L  L  P +A +     AH+      E I  
Sbjct: 680 MPHHGAAVIEMGMRGLGQIAYLAELSAPTVAAVLNAGTAHIGVVGSAEGIVR 731



 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 147/479 (30%), Gaps = 39/479 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       DL +      +G      +  +  DSR + P + F A++G   DGH ++   
Sbjct: 1   MKLATLIQDLAELAAVRVVGDDA-RDIRAVRDDSRRVGPGDLFVAVRGARTDGHAYLPAV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
           +  GA  VVV   +     +  +    V +   AL  LA     R   +  ++ ITG+ G
Sbjct: 60  IDAGAAAVVVERAIEDPALAARVTQVIVPEGARALGVLAARMAGRPGERMRLVGITGTNG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDF 162
           KTT   ++   L +   T   IG+ +   G   VP                  +      
Sbjct: 120 KTTCSYLIESILRAHDATCGVIGTVSYRYGAREVPAPYTTPTALILQEALGEMVAASCTH 179

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTG 221
            + E+  S               +A  T     HL     ++   A+ +    + L + G
Sbjct: 180 AVLEV--SSAALAMERLSGTTVEVAAFTNFTQDHLDVHGSMDAYRAAKERLFRDHLAENG 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              ++ DD     + A +    +  + +   +  AD ++R     +  + +  +      
Sbjct: 238 VAVIDVDDKAAPHMIAAAGERRVVRVSARPGATAADAEVRVLAAETTIAGITAEFATPRG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                        N+      V++  A                G   R     N     +
Sbjct: 298 SFTLRAPALLGHYNVANLAVAVAVCDALDVPHATIARGIEAMSGVPGRVERVANDAGLDI 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +   A      SVL+ + P  + R + V G     G    +         +    
Sbjct: 358 LVDYAHTPDA----LASVLAALRPLTQRRLLCVFG----CGGDRDADKRPKMGAAAAAGA 409

Query: 402 SHVWLS-----GFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
             V ++          A+ D +   +   +                 V GD+V++  K 
Sbjct: 410 DLVVVTSDNPRSEAPRAIIDQILPGVPAPFFVHSDRRVGIAAAVFEAVPGDIVLIAGKG 468



 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 2/125 (1%)

Query: 340  TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ++ + YNANPASM+AA++ L++++     R +AVLGDM E+G+ +   H ++ ++    
Sbjct: 897  RVLVDCYNANPASMRAALATLTELARADGSRALAVLGDMLELGDEAARAHAEVGQMAGDL 956

Query: 400  NISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
            ++  V   G H  AL  A          + + D    F+ S    GD V+VK S      
Sbjct: 957  DV-AVIALGEHAAALAGAGAPGDDLARVAASPDEAAAFLLSHTAPGDWVLVKGSRGMRLE 1015

Query: 459  RLINL 463
            R+I+ 
Sbjct: 1016 RVIDA 1020


>gi|148265990|ref|YP_001232696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
 gi|146399490|gb|ABQ28123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter uraniireducens Rf4]
          Length = 506

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 152/493 (30%), Gaps = 66/493 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L +++    +G      + G+  DSR +     FFA+KG   DG+ F+  A++ GA 
Sbjct: 3   LSELTKSVMPLEVGGGADPEIEGLYYDSRRVKAGGLFFALKGVASDGYSFVDTAIKAGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VVV+     ++    IP   V D   A++++A A          ++ ITG+ GKTT   
Sbjct: 63  AVVVD----GTLTPQGIPWVRVADARLAMSRMAAAFYGFPTATLPLVGITGTNGKTTITY 118

Query: 125 MLTIA-----LSSIKKTYACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFELG 168
           ++        + +              I  P T              + +     + E+ 
Sbjct: 119 LIESILEKSGIPAAVLGTVNYRFREKAIPAPNTTPESVDLQRTLRELIDMGAKGVVMEV- 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLN 226
            SH  + R +       + V T +   HL     +E    +K  +F              
Sbjct: 178 SSHALQQRRVDGCC-FDVGVFTNLTRDHLDYHLDMESYFQSKMRLFSELLAADRIKPKRC 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + S+G S NA  +  +           +      + +   
Sbjct: 237 AVVNIDDPYGPRIVQGAACPVLSYGISGNAHVRAERVVFSVAGISCVLVTPQGQINLHSE 296

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L        +   +D   + L       GR        N    T++ +  
Sbjct: 297 LLGRFNLYNILAATAAGIAMELPLDAIHEGLEHHPQVPGR---VERVANDRGLTILVDYA 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL  ++   +GR I V G     G         +   ++        +
Sbjct: 354 HTGDA----LENVLRTLTELKKGRIITVFG----CGGDRDRGKRPVMGEIAGRYSDLSII 405

Query: 407 SGFH--------------------------VLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +  +                             L+       +    E+         ++
Sbjct: 406 TSDNPRSEDPEKIIAGVREGIVPLGIREYGSEELRHGFSEKGYA-AVESRREAIRLAVAA 464

Query: 441 LVDGDVVVV--KS 451
              GD+V++  K 
Sbjct: 465 ARPGDIVLLAGKG 477


>gi|113460499|ref|YP_718563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
 gi|122945144|sp|Q0I1D8|MURE_HAES1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|112822542|gb|ABI24631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus somnus 129PT]
          Length = 495

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 154/487 (31%), Gaps = 57/487 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             LW   +           +     +  + +DSR       F AIKG   DG +FI+ A+
Sbjct: 5   TALWDIDE-------QLDSVHRDIELQEMILDSRLANTGCLFVAIKGHRVDGREFIMQAI 57

Query: 62  QKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           Q GA  V+  TD+V          +IP+    ++   L+ +A           T++ +TG
Sbjct: 58  QNGASAVLFETDLVEQHLTVSFEQNIPLIAYYELSKHLSHIADRFYSSPSQRLTLVGVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165
           + GKTT  ++L      +  T A +G+  N  G+   +          I           
Sbjct: 118 TNGKTTIAQLLAQWTQILGHTSAVMGTIGN--GLFGQIKEASNTTGSAIEIQSSLDKFIR 175

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G ++     +     + T ++  HL     +E  A AK  +F  L  
Sbjct: 176 QGADFAAIEVSSHGLVQHRVEALTFRAGIFTNLSRDHLDYHHTMENYAQAKKRLFSELNC 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQ 275
              I    D+     L   S         S       D +           S+ + +E  
Sbjct: 236 QHKILNVDDEIGATWLIELSKDDPDVVAVSCRADYQPDTKNWLKATALSFHSKGTTIEFA 295

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    IG     N+L+ L  +  L  D+   +  +       GR +       
Sbjct: 296 SSWGNGILSSPLIGGFNVSNLLLVLATLLSLGYDIGKLLATVRQLTGVCGRMEMLSAKHK 355

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    + +A         + L   + H +G+   + G     G         L   
Sbjct: 356 ATVIVDYAHTPDA-------LENALQSAAVHCQGKLWCIFG----CGGDRDRGKRPLMAA 404

Query: 396 LSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++      V ++  +         +  +     +S  V      +        S V+ DV
Sbjct: 405 IAEKFADSVIVTDDNPRTENPEQIMQDILTGFQQSSAVQIIHQREQAIKTALQSAVENDV 464

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 465 VLIAGKG 471


>gi|320530964|ref|ZP_08031997.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
 gi|320136829|gb|EFW28778.1| UDP-N-acetylmuramyl-tripeptide synthetase [Selenomonas artemidis
           F0399]
          Length = 495

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 144/481 (29%), Gaps = 48/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+   + V       I V  V D+  AL+ +             ++ ITG+ GKTT
Sbjct: 62  GARAVLTQRENVD--VPAGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119

Query: 122 TKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPV---DVDFGIF 165
           T  ++   L +               +      S      V +      +    +D  + 
Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIQVMMEDEVFPTSNTTPDVVVMQQMLAEMRARGMDTVVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R          AV T +   HL     +E  A AKA +FE +   G    
Sbjct: 180 EVSSHALDQGRVAGI--EFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237

Query: 226 NYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                  +    A   A     + S+G ++ A    R  +   +   M +    +   + 
Sbjct: 238 KTAVINADDAAGAVMRAHTTCPVLSYGVTQQAALTARDVRLAQDGMTMRLVHGDEECALT 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G     N+L   G         D    AL  F    GR +  R   +         
Sbjct: 298 LHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAH 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +          +VL        GR I V G     G         +   +       V
Sbjct: 358 TPDG-------MENVLRTARAVTRGRIIVVFG----CGGDRDRTKRPIMGRIGAEMADVV 406

Query: 405 WLSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVK 450
           +++          A+ D +                            +   GD  V++ K
Sbjct: 407 YITSDNPRTEDPAAILDEVEAGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|167760428|ref|ZP_02432555.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
 gi|167661927|gb|EDS06057.1| hypothetical protein CLOSCI_02802 [Clostridium scindens ATCC 35704]
          Length = 504

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 91/490 (18%), Positives = 156/490 (31%), Gaps = 63/490 (12%)

Query: 1   MNPL----WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  L         LL+ ++        +  V  +  DSR +     F  I G   DGH +
Sbjct: 9   MKSLGGFFMKLTQLLERLEYEVRQGSDEVEVTQLINDSRKVTEGSVFVCISGAVSDGHKY 68

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAIT 114
           I     KGA  V+V   + A      + V  VDD   AL  ++ A       K  +I IT
Sbjct: 69  IDDVAAKGAAAVIVERPVDA---PKGLTVIRVDDTRYALALMSAAYFGYPAEKLKVIGIT 125

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPV 158
           G+ GKTTT  M+   L  +      IG+    IG                          
Sbjct: 126 GTKGKTTTTYMVKSILEGVGHKVGLIGTIEAIIGDKAIPANNTTPESYTIHQYFAQMAEA 185

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG 216
             D  + E+  S  G +   T  ++  I + T +   H+        E+    K  +   
Sbjct: 186 GCDSVVMEV--SSQGLMLHRTAGIQFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGIL--- 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T       +  +             + +FG S+ AD +    +  S   ++ V+ 
Sbjct: 241 ----FTQCNLGIANVDDRWYEDVFKNATCKVETFGFSEKADLRATDVQHISRPGYLGVKY 296

Query: 277 QG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           Q     + +V     G     N L  + +       V+    AL           R    
Sbjct: 297 QVSGLMNFDVEIDIPGDFSVYNSLTAIAVCRHFDVPVENIKTALK----VAKVKGRIEMV 352

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                FTL+ + Y  N  S+++ +  L    P        ++      G  S++   ++ 
Sbjct: 353 KVSDDFTLMID-YAHNAMSLESLLLTLRDYHPQR------IVTVFGCGGNRSKTRRYEMG 405

Query: 394 EVLSLYNISHVWLSG----FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVD 443
           EV    +   V  S         A+ D +          ++           ++  +   
Sbjct: 406 EVAGRLSDFTVITSDNPRFEEPQAIIDDIIVGMKKTDGKYISIC-DRKEAIKYVIENGQP 464

Query: 444 GDVVVV--KS 451
           GDV+++  K 
Sbjct: 465 GDVIILAGKG 474


>gi|312140016|ref|YP_004007352.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-diaminopimela te
           ligase mure [Rhodococcus equi 103S]
 gi|311889355|emb|CBH48671.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,
           6-diaminopimelate ligase MurE [Rhodococcus equi 103S]
          Length = 501

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/480 (15%), Positives = 139/480 (28%), Gaps = 52/480 (10%)

Query: 6   TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +++  +   GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A
Sbjct: 14  TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
             +GA  ++ +        S  +P   VDD   AL  LA  A         +  +TG+ G
Sbjct: 74  SARGAVAMLSDRP------SDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166
           KT+T  +L  AL +       +                       +       + E    
Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTARPATRTTPEACELQQSFVEFVEEGVDA 187

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G         R  + V T +A  HL     +E           G +      
Sbjct: 188 VAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYY-TAKARLFGRDLCERAA 246

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD +   L  +   + +  +    +   AD      +     S   +  +G+ + V 
Sbjct: 247 VCIDDDYGRRLAGE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVR 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                      +   +  ++ L+        A++     +    R         F  + +
Sbjct: 304 LRV---LGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDVGQPFLALVD 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +           +   +     GR + VLG     GE        L    + Y    V
Sbjct: 361 YVHNTAG----QHRLFPYLRSVTPGRIVVVLGA---TGERDPGKRAPLGFTAARYAEVVV 413

Query: 405 WL----SGFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                        L+D          +  V                   GD V++     
Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLLAG-RG 472


>gi|34222687|sp|Q9AKP0|MURE_RICMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13235408|emb|CAC33608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rickettsia montanensis]
          Length = 479

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 154/457 (33%), Gaps = 52/457 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+SI+S+++  ++ FFAIKG + DG+ FI  A+ KGA LV+ +      I      V
Sbjct: 13  KVKGLSINSKTVKDKDVFFAIKGRNTDGNAFIKDALSKGAVLVITDNKKNIVID----KV 68

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI--------------ALS 131
             V DV  AL++       +    +IA+TG+ GK++    +                   
Sbjct: 69  IYVKDVQAALHEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTHSLLGKKAASIGTIGV 128

Query: 132 SIKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            I      I        +     R          +++ +FE   S  G  +     ++ +
Sbjct: 129 EIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLVFE--ASSHGLDQARLREIKVN 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA  T+ +  HL      E    AK ++F        I +   D                
Sbjct: 187 IACFTSFSQDHLDYHHTKENYLLAKLKLFINHLLPNGIAILNSDIEEIEFVKDYLHNHNI 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + GK  + +          +   +      +        IG   A N+L+ +  +  
Sbjct: 247 KFITVGKKGDLEITRINCSL--KGQNINFTFNNREYNFNTPIIGSFQASNLLIAVLSMHY 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                D  I +L      +GR         +   T I   Y   P +++ A++ L  I  
Sbjct: 305 TGFAFDDVIDSLVEVKAVKGRM-------ERIDNTNIFVDYAHTPDALEKALTELKNIKL 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H + +   V G     G         L   ++      + ++  +            +  
Sbjct: 358 H-DSKLSVVFG----CGGNRDKAKRSLMGQMAAKRADTIIITDDNPRNEDPKLIRAEIIS 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + ++ +   +   +    +  ++L   D+++V  K 
Sbjct: 413 GIEKADYTEIA-NREEAIKYGINNLKQDDILLVAGKG 448


>gi|254419590|ref|ZP_05033314.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
 gi|196185767|gb|EDX80743.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Brevundimonas
           sp. BAL3]
          Length = 485

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 92/479 (19%), Positives = 156/479 (32%), Gaps = 50/479 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L    DLL+        +     + G++ DSR +AP   F A+ G   DG  FI  A
Sbjct: 1   MSALH-LSDLLR------RDVASDPIITGVTSDSRKVAPGALFVALPGTAADGRAFIPQA 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGK 119
           + +GA  V+            + PV     DV  A    A         T +A+TG+ GK
Sbjct: 54  LAQGAAAVLA----PTDTPDSAAPVLVTSGDVRRAYAIAARGFYGAQPRTCVAVTGTNGK 109

Query: 120 TTTKEMLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167
           T+         + +                G     +  P   +    +    + EL   
Sbjct: 110 TSVAAFCRQIWAGLGHKSASMGTLGVVGQKGDRTYALTGPGLTSPDAAEAARLMAELAAK 169

Query: 168 -------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                    S  G  +     V    A  T +   HL     +++  +AK  +FE L   
Sbjct: 170 DVTHVAVEASSHGIDQRRLDGVALKAAAFTNLTQDHLDYHGTMDDYRAAKMRLFEALLPR 229

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +   DS      A +  +    +   G+ +  D  L   +   E   + + ++G  
Sbjct: 230 GRTAVLNADSDAYSAFAAASIMAGLGVMGVGE-RGRDLALIGRQATPEGQRLTLDVRGDV 288

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +++    G   A N L+  G+        D  I AL      +GR +R      +G   
Sbjct: 289 RDILLPLAGAFQASNALVAAGLCIAAGDRPDEVISALEGLTGAQGRLQRIAAETGRG-EV 347

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +D ++  +         VL+ + PH  GR I V G     G         L   ++   
Sbjct: 348 YVDYAHTPDGLET-----VLTALRPHATGRLIVVFGA----GGDRDRGKRPLMGEIAGRL 398

Query: 401 ISHVWLSG-----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                ++          +++  +                       + DGDVVV+  K 
Sbjct: 399 ADVAIVTDDNPRSEDPASIRAQVRAGCPEALEIGDRRAAIEAAIEMMRDGDVVVIAGKG 457


>gi|301155881|emb|CBW15350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 489

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 82/461 (17%), Positives = 154/461 (33%), Gaps = 46/461 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V  + +DSR +   + F A+KG  +D   F+  ++  GA  VV+ TD+     S+  
Sbjct: 15  DINVKAMVLDSRKVTQGDLFVAVKGHRFDASQFVPQSISSGASAVVLETDLENEHLSIQW 74

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++PV     +   L+ LA         K T++ +TG+ GKTT  ++L    +      
Sbjct: 75  QNNVPVIHYYHLSANLSALAGKFYEHPSEKLTLVGVTGTNGKTTVSQLLAQWATLFGHKA 134

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF---------ELGM-------SHLGEIRFLTHL 181
           A +G+  N  G+   +          +          E G        S  G ++     
Sbjct: 135 AVMGTIGN--GLLGQVKEAKNTTGSAVEVQENLADFVEKGAGFASIEVSSHGLVQHRVEA 192

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++   A+ T ++  HL     +E+ A AK   F  L     I    D      L    + 
Sbjct: 193 LKFKAAIFTNLSRDHLDYHETMEKYAEAKKRFFVDLAPELQILNADDPIGAAWLSELPNG 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + +     F  +        +     E + ++V     +  +    IG     N+L+   
Sbjct: 253 IAVSCRPDFQPTSKQWLYATQICFTHEGAVIDVASSWGNGTLHSPLIGAFNVSNLLLATA 312

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++  L    D  I+ +S      GR +  + A           + +A           L+
Sbjct: 313 VLLALGYSFDELIRTVSQLKGVNGRMELIKKAGKPTVIVDYAHTPDA-------LEKALN 365

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
               H +G+   + G     G    +    L    +      V ++  +           
Sbjct: 366 AAREHCKGKLWCIFG----CGGDRDAGKRPLMAKAAEQFADLVIVTQDNPRTEDPNKIEA 421

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +     R   V      +    F   + V+ DV+V+  K 
Sbjct: 422 DILTGFSRMEDVGVIPDREEAIKFTIENAVENDVIVIAGKG 462


>gi|325674508|ref|ZP_08154196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325554768|gb|EGD24442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 501

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 145/480 (30%), Gaps = 52/480 (10%)

Query: 6   TFHDLLQAI--QGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +++  +   GH +   P   +  + G+  DSR + P + + A+ G  + G DF   A
Sbjct: 14  TLREVVDRLCEAGHVVADAPVDDRRVITGVCQDSRRVRPGDLYAALPGRRHHGADFASEA 73

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
             +GA  ++ +        S  +P   VDD   AL  LA  A         +  +TG+ G
Sbjct: 74  TARGAVAMLSDRP------SDIVPTVVVDDPRVALGPLAAWAYGNPSTAFDLYGVTGTNG 127

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166
           KT+T  +L  AL +       +                       +       + E    
Sbjct: 128 KTSTVYLLEAALVAAGLRTGVVTGVTVRGPGTVRPATRTTPEACELQQSFVEFVEEGVDA 187

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G         R  + V T +A  HL     +E   +AKA +FE         
Sbjct: 188 VAMEVSSHGLAEHRIDGSRFDVGVFTNLARDHLDYHPDMEAYYAAKARLFERDL-CERAA 246

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD +   L A+   + +  +    +   AD      +     S   +  +G+ + V 
Sbjct: 247 VCIDDDYGRRLAAE---VAVPHLTFSARDPGADVYATTVRAQRWGSTFTLHHRGERVPVR 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                      +   +  ++ L+        A++     +    R         F  + +
Sbjct: 304 LRV---LGGHQVDNAVAALAALSVRGIDLGAAVAGIEALDAIPGRLERVDVGQPFLALVD 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +           +   +     GR + VLG     GE        L    + Y    V
Sbjct: 361 YVHNTAG----QHRLFPYLRSVTPGRIVVVLGA---TGERDPGKRAPLGFTAARYAEVVV 413

Query: 405 WL----SGFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                        L+D          +  V                   GD V++     
Sbjct: 414 VTDESAFSDDAADLRDAVAAGARRAGTAEVVVIPDRGEAIAVAVDLAGAGDTVLLAG-RG 472


>gi|160903253|ref|YP_001568834.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
 gi|160360897|gb|ABX32511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Petrotoga mobilis SJ95]
          Length = 500

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 97/477 (20%), Positives = 168/477 (35%), Gaps = 50/477 (10%)

Query: 10  LLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           LLQ + G+    +       +  I  +S ++   + F A KG  +DGHDFIL A  KGA 
Sbjct: 8   LLQFLNGNIKKKVIKNEILNIADIKDNSENVEKDDIFIAFKGSRFDGHDFILSAFDKGAS 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKE 124
           L++   +        S+    V+D+  A   L+            I+ +TG+ GK+TT  
Sbjct: 68  LIIAQDEEKIPTND-SLQYIIVEDIKKAAADLSHKLFDISPDDFKILGVTGTNGKSTTVS 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-----------------L 167
           ++   L    K    I +    I     + + P +    I E                 +
Sbjct: 127 LVHHILQKSDKDSTLISTVEIKI--KDEVVKEPYNTTPSILELSKILKNSKENNIEFINM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     V+  I   T I   HL      EE  S K  +   L+  G I +  
Sbjct: 185 EVSSHAIHQRRIEGVKFDIISFTNITRDHLDYHKDFEEYKSIKLSLMNYLKDEGKIVI-- 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
                + L         K + ++G  KNADF +  ++Q  +Q    ++ +     E+  H
Sbjct: 243 ---NLDRLNKDDFVKSGKEVITYGFKKNADFVIENYEQTLQQMKFTIKTKEHKSYEIRSH 299

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+     I ++   + +  I ++S F    GR +    + + GFF +ID ++
Sbjct: 300 LIGKFNVYNITNAFVIATLFGLEPEKIIYSISTFKGVSGRFQIVPGSKSLGFFAVIDFAH 359

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         VL   S   EGR I V G     G  +      L   +   +   + L
Sbjct: 360 TPDA-----LNEVLKTASSITEGRIITVFGA----GGNADKGKRKLMGQVVSEHSDVIVL 410

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +               +   + +  H       +            GD+V++     
Sbjct: 411 TNDDPKDEDPDQIIEDVSKGIDQDKHFIVIPDRETAIDTALRFANKGDIVIIAG-RG 466


>gi|126649879|ref|ZP_01722115.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593598|gb|EAZ87543.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 493

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 93/473 (19%), Positives = 163/473 (34%), Gaps = 44/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  +    V  I +DSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 8   AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
           +VV   ++       +I    V D   A+  LA           T+I +TG+ GKT+   
Sbjct: 68  IVVTERELP---LGETIAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170
           ++   +  + +  A       N  G+    A    D       IF   M          S
Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G        V   IA+ T +   HL     +EE   AK  +F  L +          +
Sbjct: 185 SHGLALGRLAGVDYDIAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 244

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             +    +  A+    ++++G K++ ADF+    +     +  +V++      V  + +G
Sbjct: 245 ADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  +         ++  I+ +    P +GR ++    L    F     + +A 
Sbjct: 305 EFNIYNVLAAIVAFYGRGYTMEAIIEQIEQLPPVKGRMEKVCSDLPVQMFVDYAHTPDA- 363

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                     +    P+ +G+ I ++G     G   +S    +AE  S     +V L+  
Sbjct: 364 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 412

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        L   +    +                    GD+++   K 
Sbjct: 413 DPRYEDYNSITGDLAKGML-HDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464


>gi|88801290|ref|ZP_01116818.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
 gi|88781948|gb|EAR13125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaribacter irgensii 23-P]
          Length = 488

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 157/476 (32%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +  + I       V  +  DSR  A   AF A+KG   DGH FI  A+  
Sbjct: 1   MKNLKDILYKVSANKIFGETNIVVKNLVFDSRKAACNTAFIALKGVAIDGHLFIDKAINL 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +VV             +    V D   AL  +A         K  +I +TG+ GKTT
Sbjct: 61  GAIVVVCED--FPKEQKEGVTYIQVSDTKIALAIMASNFYDNPSSKIPLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKT--------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +L                                       +     +D       +
Sbjct: 119 VASLLYQLFKKAGYKVGLLSTVKVLVDETEFKATHTTPDSVTINSYLDKMIDAGVDFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     V T ++  HL          + K   F+ L K+  +  N 
Sbjct: 179 EVSSHGIHQKRTEGLTFAGGVFTNLSHDHLDYHDTFAAYRNVKKHFFDTLPKSAFVLANI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   S A+      ++     AD++++  ++    + + +      ++++   
Sbjct: 239 DDKNGRFMLQNSKAIKK----TYALKTAADYKVKILEKQLSGTLIALDGTEVWIKLIGVF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++   +     +           ++ L++    E    R+   ++Q   T I + Y 
Sbjct: 295 NIYNVTAVIATAELLGLE-------KLEILTILSALESVSGRFEYVISQDGVTAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     V+  +   G+  ++    +A + S  +   ++ S
Sbjct: 347 HTPDALKNVLETINDIKIGAEK----VITVLGCGGDRDKTKRPKMAHIASQLSNQVIFTS 402

Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                 +   + + +   I +   +                     GD++++  K 
Sbjct: 403 DNPRTENPQTILEDMEAGIALQNYKKTLTILDRKQAIRTACKFSEPGDILLIAGKG 458


>gi|159045012|ref|YP_001533806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
 gi|157912772|gb|ABV94205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dinoroseobacter shibae DFL 12]
          Length = 493

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 35/451 (7%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----ASIGSL 81
            V G+++DSR +     F  + G    G +FI +A++ GAG ++ + +        +   
Sbjct: 21  PVTGLALDSRQVKEGYLFAGLPGSRVHGAEFIQYALRMGAGAILTDAEGARIARDVLDGA 80

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            + +   +D   A +  A        AT++ +TG+ GKT+           +    A IG
Sbjct: 81  EVTLIVAEDPRQAFSAAAALWYGAQPATMVGVTGTNGKTSVASFTRQLWQGLGHAAANIG 140

Query: 142 SYNNH--------IGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIAV 188
           +               P  L       +          +  S  G  +     VR   A 
Sbjct: 141 TTGIEGDFSADLAHTTPDPLTLHAALAEMAAQGITHAAMEASSHGLDQRRLDGVRLVAAG 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T  +  HL      E   +AKA +F  +     + +   D                 + 
Sbjct: 201 FTNFSQDHLDYHETFEAYFAAKAGLFSRVLADQGMAVINLDDPKGADMMAIAHGAGAELL 260

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G  K+A  +L   +  ++   M    +G + +   + +G   A N+L+ +G+V    A
Sbjct: 261 TVGTHKDAMLRLTAQRFDADGQEMRFTWKGVAHQARLNLVGGFQASNVLVAMGLVMATGA 320

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            V   +  L       GR ++     N    T+  +  +   A      + L  + PH  
Sbjct: 321 QVGDLVPLLPRLATVRGRMQKVARRENGA--TVFVDYAHTPDA----LKTALRALRPHVL 374

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI- 422
           GR + V G     G    S    L    +      V+++           ++  +     
Sbjct: 375 GRLVVVFGA----GGDRDSGKRPLMGAAAAAAADVVFVTDDNPRSEDPALIRAQVRAGCP 430

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       L    +L  GDV+++  K 
Sbjct: 431 EATDVPDRAEAILRGVDALEPGDVLLIAGKG 461


>gi|47097270|ref|ZP_00234829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
 gi|47014343|gb|EAL05317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes str. 1/2a F6854]
          Length = 410

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 146/420 (34%), Gaps = 33/420 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     +EE A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKSLLFAQLGNSYHTSNPKI 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        I +FG  + ADFQ    K  S  S  ++     +  +   
Sbjct: 236 AVLNADDAESVRMQKATAAHIITFGIKQEADFQASNIKITSHGSTFDLGTPVGNFTLKIK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +     L   ++ AIK +      +GR +                 Y
Sbjct: 296 MIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKGRFELVHAGQEFPVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P  +   +  + + +         V   +   G+  +     +A++   Y  + ++ 
Sbjct: 352 AHTPDGLLNVLETIDEFAEKR------VFVVVGCGGDRDKGKRPQMAKIAVDYATNPIFT 405


>gi|167586015|ref|ZP_02378403.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 292

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +  +  + IQG ++    +     +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLGEAARLIQGATVHGDARVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLADV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
             +GA   +V+     +   L++P     +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  AARGAAAALVSH----TPAGLAMPTIEGGETRAALGALAHGWRKRFPLPVVAVTGSNGKT 115

Query: 121 TTKEMLTIALSS---IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           T KEM+    ++        A  G+ NN +G+PLTL R+       + ELGM+H GE   
Sbjct: 116 TVKEMIASIFAAAVGADARLATAGNLNNDVGLPLTLLRLNAAHRLAVIELGMNHPGETEI 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           L  L  P +A++      H    + +E +A   A +   L   G      DD++  + +
Sbjct: 176 LARLTAPTVALVNNAQREHQEFMATVEAVALEHAAVIHALAPDGVAVFPADDAYAGIWR 234


>gi|313895960|ref|ZP_07829514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975385|gb|EFR40846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 495

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 143/481 (29%), Gaps = 48/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I   P   +  +  DSR I P   F  I G H D H FI +  + 
Sbjct: 2   MKRLSELAALVPGARITGDPAVEILSVERDSRRIEPGALFVCISGAHVDAHTFIPNTARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+   + V       I V  V D+  AL+ +             ++ ITG+ GKTT
Sbjct: 62  GARAVLTQRENVD--VPAGISVLRVPDLNAALDIIVPYFYDYPARSMRVVGITGTNGKTT 119

Query: 122 TKEMLTIALSSI-------------KKTYACIGSYNNHIGVPLTLARMPV---DVDFGIF 165
           T  ++   L +               +      +      V +      +    +D  + 
Sbjct: 120 TSYLVRAILRAAGRRVGLVGTIRVMMEDEVFPTANTTPDVVVMQQMLAEMRARGMDTVVM 179

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L + R          AV T +   HL     +E  A AKA +FE +   G    
Sbjct: 180 EVSSHALDQGRVAGI--EFDTAVFTNLTQDHLDYHKTMENYARAKARLFELVSAPGVKAG 237

Query: 226 NYDDSFFELLK-AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                  +        A     + S+G ++ A    R  +   +   M +    +   + 
Sbjct: 238 KTAVINADDAAGPVMRAHTTCPVLSYGVTQQAALTARDIRLAQDGMTMRLVHGDEECALT 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G     N+L   G         D    AL  F    GR +  R   +         
Sbjct: 298 LHITGEFNVYNVLAAAGAARAEGIGYDVIRAALEGFTGVPGRFELVRAGQDFSVIVDYAH 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +          +VL        GR I V G     G         +   +       V
Sbjct: 358 TPDG-------MENVLRTARAVTRGRIIVVFG----CGGDRDRTKRPIMGRIGAEMADLV 406

Query: 405 WLSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGD--VVVVK 450
           +++          A+ D +                            +   GD  V++ K
Sbjct: 407 YITSDNPRTEDPAAILDEVESGALPVLGGKPYEKLVDRRTAIFDAVRAARPGDSVVILGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|260063716|ref|YP_003196796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783161|gb|EAR14334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 489

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 159/476 (33%), Gaps = 46/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL  +  H++       +  I  DSR     +AF AI+G   DGH FI  AV+ 
Sbjct: 1   MKQLKDLLFGVSLHAVSGSTAVGIESIRFDSRETGASDAFVAIRGTEADGHRFIDGAVKN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G   V+     +    +  +    V D   AL  +A            ++ +TG+ GKTT
Sbjct: 61  GVRAVICEE--LPQDLADGVTYVEVADTQLALAVMASNYYGNPSANLRLVGVTGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFEL 167
              +L             I +    +       R+                +       +
Sbjct: 119 VSTLLYQLFKKAGYKVGLISTIKIMVDDQEFPTRLTTPDSLTINKYLSRMNEAGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +     + T ++  HL       +    K ++F+GL K+     N 
Sbjct: 179 EVSSHGIAQRRTEGLVFEGGIFTNLSHDHLDYHKDFADYRDTKKKLFDGLPKSAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A  +    ++     ADF+ +  +Q  +   +++Q      +++   
Sbjct: 239 DDKNGLFMIQNTRARKL----TYALRSYADFRAQILEQQLDGQLLKIQDNEVWTKLIGQF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++         +           ++ L +    +    R++  +++   T I + Y 
Sbjct: 295 NAYNLLAIYATASLLGLG-------QLEILQLLSGLQTVDGRFQYFVSKQRITAIVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ +    E     V       GE  +S    +  + S  + + ++ S
Sbjct: 347 HTPDALKNVLVTINALRTGNESVITVV----GCGGERDKSKRPVMGHIASDMSETAIFTS 402

Query: 408 G----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +   +       V   E  +            GD++++  K 
Sbjct: 403 DNPRREPPRDIIAEMEAGVEPQNVRKVLVIEDREQAIRTACKMAGGGDIILIAGKG 458


>gi|83953997|ref|ZP_00962718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
 gi|83841942|gb|EAP81111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. NAS-14.1]
          Length = 493

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/461 (17%), Positives = 149/461 (32%), Gaps = 36/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74
           G +        V GIS+DSR + P   F A+ G    G +FI +A++ GA  V+ + +  
Sbjct: 12  GLTAKGGGNPPVTGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALRMGAVAVLTDAEGA 71

Query: 75  ---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                ++    + +   D    AL++ A         T+IA+TG+ GKT+    +     
Sbjct: 72  TLAADALAQAEVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWI 131

Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
            +            +        +           +      GI    +  S  G  +  
Sbjct: 132 EMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAHASANGITHAAMEASSHGLDQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      +    AKA +F  +       +   D    +    
Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVA 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + + G+    D  L   +  +    +    +GK+ +   + IG   A N+L+
Sbjct: 252 IARARGCEVITVGR-DGGDLHLIGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLL 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    AD       L       GR +      N G    +D ++  +  +      
Sbjct: 311 AAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIAT----- 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  + PH  GR +A++G     G         L    +  +   V+++  +  +     
Sbjct: 365 ALQAMRPHVMGRLVAIVGA----GGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  +             L    ++  GD +++  K 
Sbjct: 421 IRAAVMEGAPEATEVGDRAEAILRGIDAIGTGDALLIAGKG 461


>gi|289624977|ref|ZP_06457931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289647035|ref|ZP_06478378.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330868710|gb|EGH03419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 487

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIRVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLHSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|260576883|ref|ZP_05844866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
 gi|259020920|gb|EEW24233.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodobacter sp. SW2]
          Length = 493

 Score =  136 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 87/471 (18%), Positives = 158/471 (33%), Gaps = 40/471 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DL     G +     +  + G+++DSR++ P   F A+ G    G +FI +A++ GA
Sbjct: 7   TLADL-----GLTAKAGQEARITGLAVDSRAVKPGFLFAALPGVKAHGGEFIQYALRMGA 61

Query: 66  GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+ +          +   S  +    D   AL   A         T++ +TG+ GKT+
Sbjct: 62  SAVLTDVEGAKIADDVLAGSSAALVVAQDPRQALAWAAALWFGAQPETMVGVTGTNGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARMPVD---VDFGIFELG 168
                    S++      IG+                 P+TL R+  D          + 
Sbjct: 122 VATFTRQIWSALGHAAINIGTTGVEGAWEAPSLHTTPEPITLHRLLADAAAAGVTHAAME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     VR   A  T     HL      +   +AKA +F  +       +   
Sbjct: 182 ASSHGLDQRRLDGVRLKAAGFTNFTQDHLDYHGTFDAYFAAKAGLFTRILPDDGTAVINL 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +       A   A   + + S G  K  D Q+   +  +    +    QG+  +V  + I
Sbjct: 242 NDPRGAEIALLAAERGQRLISVGHGKVCDLQIAGQRFDATGQDVRYLWQGQPHQVRLNLI 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A+N+ +  G+     A        L       GR +      N      +D ++  
Sbjct: 302 GGFQAENVALAAGLAIGSGAPAGDVFAVLPRLEGVRGRMQLAATRRNGA-SVFVDYAHTP 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  +       L  + PH  GR + V G     G    +    L    +  +   ++++ 
Sbjct: 361 DAIAT-----ALKALRPHVMGRIVVVFGA----GGDRDTTKRPLMGQAAREHADVLYVTD 411

Query: 409 -----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++ A+  +    +         L    +L  GD ++V  K 
Sbjct: 412 DNPRSEDPATIRAAIMAACPEANEVGDRAEAILRGVDALGPGDALLVAGKG 462


>gi|229121751|ref|ZP_04250972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
 gi|228661667|gb|EEL17286.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus 95/8201]
          Length = 243

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS+++     F  I      DGHD++  A+ 
Sbjct: 1   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHDYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAVASLWKKSYG--TPPKGVPIIFVDNTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G         
Sbjct: 117 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIERFTW 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222


>gi|226325274|ref|ZP_03800792.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
 gi|225206622|gb|EEG88976.1| hypothetical protein COPCOM_03066 [Coprococcus comes ATCC 27758]
          Length = 518

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 145/464 (31%), Gaps = 46/464 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA---SIG 79
            +  + GI+ +S+       F  I+G   DGHD+I  A   GA  +++   +        
Sbjct: 22  EEMEIRGITCNSQKAEEDSLFVCIQGSRADGHDYIEEACNLGASCILIEKLVSGGRMLKF 81

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++ V  V D   AL  ++         K  +I +TG+ GK+T   M+   L S+ +  
Sbjct: 82  PENVAVVLVKDTREALAGISRIWFGSPADKLKVIGVTGTKGKSTVAVMIREMLESLGQKC 141

Query: 138 ACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             IG+  +H+G                       +     + + E+  S  G  +     
Sbjct: 142 GLIGTIAHHLGNEVVTSQNTTPDAFTIQSYFAKMVEAGCHYAVMEV--SSQGIKQHRIDG 199

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IAV T     H+        +   +       E+      N DD+    +  +   
Sbjct: 200 IWFEIAVFTNFGEDHIGP-GEHASLGEYRYYKSCLFEQCRIGIGNLDDAQCSYMFQRKCC 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY---HMAQNMLM 298
                     + +   F+        + S++    + K++                N+  
Sbjct: 259 TKYGFTCREEEGQERGFRNSHVLTAEKISFLMEGGELKTVFYADDRKYELALPGKFNVYN 318

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  ++       +A  V      RG+  R    +     ID ++NA      +   
Sbjct: 319 ALAALQTVSCLGFEREEAGDVLKHLVVRGRMERVDAGENILCYIDYAHNA-----MSLAK 373

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
           VL  +  +   R + V G     G  + S    +  V        +  S          +
Sbjct: 374 VLKMLRIYEPERILLVFG---CGGNRAGSRRSGMGRVAGELANLTIITSDNPRWEEPAKI 430

Query: 415 KDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   I          +  +   LF       GD++++  K 
Sbjct: 431 MADVEEGIKETSGAYRMIQDREEAVLFAVEMARQGDILLIAGKG 474


>gi|329848187|ref|ZP_08263215.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
 gi|328843250|gb|EGF92819.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Asticcacaulis biprosthecum C19]
          Length = 487

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 94/474 (19%), Positives = 151/474 (31%), Gaps = 47/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L+        +    FV G++ DSR +     F A+ G   DG DFI  A+ KGA 
Sbjct: 6   LSDILR------RDLDHDPFVTGVTADSRKVDKGTLFCALPGTAIDGRDFIPQALAKGAA 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+   D  A++ S    +  V DV  A    A A         +A+TG+ GKT+     
Sbjct: 60  AVLA-PDDTAALESPDSLLVKVSDVRRAYALAAKAFYGSQPKICVAVTGTNGKTSVATFC 118

Query: 127 TIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
                                ++  G    +    +                        
Sbjct: 119 RQIFSTLGKKSASMGTLGVVKSDIDGTETAVTGPGLTTPDAADMARHLSELAADGVTHLA 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L  S  G  +     V    A  T +   HL   + +E    AK  +FE L   G   + 
Sbjct: 179 LEASSHGIDQRRLDGVSLTAAGFTNLTQDHLDYHATMEAYRCAKLRLFESLLPRGRTAVL 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             DS      A    L   ++ S G+ +     +       +   + ++ QG+  E    
Sbjct: 239 NADSDAYNSFAAMCVLSGTSVMSVGE-RGRGLAMVGRDLTVDGQILFIEHQGRKYETKLP 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N L+  G+      D    I ALS+     GR +R     N      +D ++
Sbjct: 298 LAGLFQASNALVAAGLCIAAGEDPGAVIHALSLLKGARGRLERVGAKRN-AAEVYVDYAH 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         VL  + PH +G+ + V G     G             ++        +
Sbjct: 357 TPDGLET-----VLKALRPHTQGKLVVVFG----CGGDRDKGKRPQMGAIAARLADRAIV 407

Query: 407 SG-----FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +           ++  +   +     E        L   S L  GDV+VV  K 
Sbjct: 408 TDDNPRSEDPATIRAEVLAGMSSETVEIGDRKKAILEAVSGLKTGDVLVVAGKG 461


>gi|91786968|ref|YP_547920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
 gi|91696193|gb|ABE43022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas sp. JS666]
          Length = 501

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 144/477 (30%), Gaps = 45/477 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L T     + ++    G         +  DSR +   + F A  G   DG  ++  A+
Sbjct: 3   TQLHTPEQAARWLRERVTG--------SLRTDSRMVGGGDGFIAWPGAATDGRKYLGDAL 54

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             GA   +V        G     V     +  A   +A A          + A+TG+ GK
Sbjct: 55  ASGARACLVELQGFEPRGPDDERVAAYAGLKAATGPIAAAYFDEPSRHLQVAAVTGTNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIF 165
           T+T   L  AL  + +    +G+                    +     R  VD  F   
Sbjct: 115 TSTTWWLAQALGRLGRKCGVVGTLGIGAPGAVVFTGLTTPDPVLLQQQMRRFVDEGFATC 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L  S +G +          +A+ T     HL     +++   AK  +F        +  
Sbjct: 175 ALEASSIGLVERRLDATTIQVAIFTNFTQDHLDYHPSMQDYWEAKKMLFSWPGLKAAVIN 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D    E   + S A     +++   +  A    +K          +V    +   V  
Sbjct: 235 VDDGKGLE--LSASLAGSDLDVWTLSCTGPARIHAQKIHHGVNGVSFDVVEGAEQHRVSS 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G +   N+L  +  +  +   +  A+ A +   P  GR                   
Sbjct: 293 KLVGQYNVYNLLGVIAALRAMGIPLVDAVAACADLLPVPGRMDTLAEEGLPLVVID---- 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  ++ L  ++    G+   V G     G    +    L   ++  N   V 
Sbjct: 349 YAHTPDALEKVLTALQPVARSRGGQLWCVFG----CGGDRDAGKRPLMAAVAEKNADRVV 404

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +         +   L     VH             S     DVV++  K 
Sbjct: 405 VTSDNPRSENPLAIIDQVLRGLNHRDAVHVQADRAMAITHALSLAQAHDVVLLAGKG 461


>gi|70726942|ref|YP_253856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus haemolyticus JCSC1435]
 gi|123659840|sp|Q4L525|MURE_STAHJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|68447666|dbj|BAE05250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus haemolyticus JCSC1435]
          Length = 494

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 152/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L + I+   +       V  I+ DSR+ +    F A KG   D H F  + V +G
Sbjct: 1   MNANELFEKIRVKQVIGTLDINVTDITTDSRTASEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
           A ++VVN        +  +    V D L   + LA         + T I +TG+ GKT+ 
Sbjct: 61  AKVIVVNHQQD---INGDVTQVIVPDTLRVASLLAHTLYDFPSHQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSI--------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    +           +                  +   +   + E      + 
Sbjct: 118 ATMIHLIYRGLGKGSAYLGTNGFQINEHKTRGANTTPETVSLTKKIKQAVDENAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYAV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    I+++G   +A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDDFSKYLASVTPYEIFTYGIDHDAQFMAKNIQESLQGVHFDFDTPIGTYSVKTPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++  ++ +    P           L     +L  +    
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSMEDIVRVVENLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++          +V  + 
Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLIG-MA--GERDLTKTPEMG--AVACRADYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H HY   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHNHYVEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|295706372|ref|YP_003599447.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294804031|gb|ADF41097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 490

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 155/476 (32%), Gaps = 46/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +            +  I +DSR + P   F  I G   DGH F   AV+KG
Sbjct: 4   MDLRELLTHLHDFVQLPEQNIDITSIEMDSREVKPGALFICIDGYTVDGHSFAQMAVEKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++    +   +  + +          A+  LA A   +   K  +I +TG+ GKTT 
Sbjct: 64  AVAILAEKPVDVEVPVVRV-----KSTKRAMAVLADAFYNQPTQKMHLIGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++     S  K    IG+    IG      +        +       + E      + 
Sbjct: 119 THLIEHIFKSQHKKTGLIGTIEIRIGDTSYDVKNTTPESLTLQKTFHQMVEENVEVAMME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV + +   HL     +E+   A        G          
Sbjct: 179 VSSHALDLGRVHGCDFDVAVFSNLTQDHLDYHHTMEDYRRAKGLLFAQLGNAYNHNRPKF 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +       T+ ++G  + +D +    +  +  +  ++    +++ V   
Sbjct: 239 AVLNADDAATEEYIKNTAATVITYGIDRESDIRATNIQITNSGTTFDLTTPTETVRVGMK 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    +   ++ + V     GR   +     +  FT+I + Y
Sbjct: 299 LIGKFSVYNVLAATASCLVSGIPLSVIVEEIKVLEGVSGR---FEVVDAEQDFTVIVD-Y 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +  + + +   +     ++G     G         +   ++    +   L
Sbjct: 355 AHTPDSLENVLKTVKEFA---KRNIYVIVG----CGGDRDRTKRPIMARIAAEYSTQAIL 407

Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +++ L    +V  +        +   ++   DV+V+  K 
Sbjct: 408 TSDNPRSEDPLAILKDMEEGLDTDNYVTIA-DRAEAIRYAVETVHADDVIVIAGKG 462


>gi|254787002|ref|YP_003074431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
 gi|237685670|gb|ACR12934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Teredinibacter turnerae T7901]
          Length = 509

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 143/459 (31%), Gaps = 45/459 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN--TDMVASIGSL 81
              + G+S+DSRSIA  E F A+KG   DG  FI  A+ +GA  VV +   D   S    
Sbjct: 30  NPEITGLSLDSRSIAVGELFCAVKGHSVDGRQFISAAISRGATAVVADASDDFDFSSVPN 89

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI------ 133
            IP+  V ++   L+ +A            +I +TG+ GKTT  ++L    + +      
Sbjct: 90  DIPLVLVKNLGRTLSLIAGNFYDHPSRSVRVIGVTGTNGKTTCVQLLMQLFNQLGEKAAS 149

Query: 134 --KKTYACIGSYNNHIGVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRP 184
                Y    S     G+    A           +       + +S     +     V  
Sbjct: 150 IGTMGYGFSQSALQDFGLTTPDAIACQRVLAQLRNAGATFVAMEVSSHALEQGRVDAVNF 209

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV T I+  HL      E   +AK+ +F        +    D +   L    S A   
Sbjct: 210 EGAVFTNISRDHLDYHGTFEHYIAAKSRLFTFDALRFAVINGDDSASRAL----SAASTA 265

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++ + +G         +      E    ++        +    IG     N+L  +    
Sbjct: 266 ESSFLYGAESGNTVVAKDIALSPEGVAAKISSAWGEANIQSCLIGNFNILNLLAVITTAC 325

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                +    + +    P   RG+  R  ++ G  T+  +  +   A        L  + 
Sbjct: 326 AAGYSLPAVAEQVQHLQP--ARGRMQRIVVDGGDVTVCVDYAHTPDA----LEKALLALR 379

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDAL 418
                    V G     G             ++  +   V ++  +         + D L
Sbjct: 380 AQAANDVWVVFG----CGGDRDKGKRAQMGRIAAEHADAVVVTSDNPRTETPACIIDDVL 435

Query: 419 PR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    V   E       F       GD V++  K 
Sbjct: 436 SGIPASDKRVTNFEDRSAAIEFAILQAKSGDTVLIAGKG 474


>gi|228945809|ref|ZP_04108155.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228813874|gb|EEM60149.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 252

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 93/226 (41%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G         
Sbjct: 126 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231


>gi|83949456|ref|ZP_00958189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
 gi|83837355|gb|EAP76651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius nubinhibens ISM]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 155/471 (32%), Gaps = 40/471 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L     G +     Q  V G+S+DSR       F A+ G +  G  FI  A+++GA
Sbjct: 10  SLTEL-----GLTAQGGAQALVTGLSVDSRQTREGHLFAALPGTNVHGARFIATALERGA 64

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+ + +  A    L    ++ +   +D    L+  A          +IA+TG+ GKT+
Sbjct: 65  AAVLTDAEGAALARDLLDGAAVALVVAEDPRQTLSYAAALWYGGQPECMIAVTGTNGKTS 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELG 168
                    + +      +G+                 P+TL R+  +          + 
Sbjct: 125 VASFTRQIWAELGFEAVNLGTTGVEGAYQVPLAHTTPEPITLHRVLAECQAAGVTHAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V+   A  T     HL   +  +E   AKA +F  +       +   
Sbjct: 185 ASSHGLAQRRLDGVQLAAAGFTNFTQDHLDYHASFDEYFDAKAGLFARVLPEDGTAVINI 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D       A+      + I   G+   AD  LR  +  +    M    +G+  +     I
Sbjct: 245 DDPRGAEMAEIARHRGQGILCVGRKDEADLILRAQRFETTGQTMRFDWEGRPYQTTVPLI 304

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N+L+  G+     AD       L       GR +      N      +D ++  
Sbjct: 305 GGFQGENLLLAAGLAIATGADPSRVFDTLPQMRTVRGRMELAATRENGA-AVFVDYAHTP 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +          +  + PH  GR IA++G     G    +    L    +  +   V ++ 
Sbjct: 364 DAVGT-----AIRALRPHVMGRLIAIVGA----GGDRDAGKRPLMGRAAGEHADQVIVTD 414

Query: 409 -----FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++ A+                 L     L  GD +++  K 
Sbjct: 415 DNPRSEDPALIRAAVLEGCPEALEMGDRAEAILRGVDMLGPGDALLILGKG 465


>gi|239636818|ref|ZP_04677820.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
 gi|239598173|gb|EEQ80668.1| Mur ligase middle domain protein [Staphylococcus warneri L37603]
          Length = 686

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 103/480 (21%), Positives = 193/480 (40%), Gaps = 29/480 (6%)

Query: 4   LWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSI-----APQEAFFAIK--------G 48
           + T  D+   I G    I       +N        I     +   A+F+ K        G
Sbjct: 1   MLTIKDISNIIGGTLYDIENNIDREINDFET----IYGFVKSKHTAYFSPKKDTWWRELG 56

Query: 49  PHYD---GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
              +   G+D I  +     GL++  T          IP   V D + A   LA+  R +
Sbjct: 57  RSKNAPEGNDLIDKSNPN-VGLIITET--YVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQ 113

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  +IAITGS+GK++T+ +    L           +          L ++  + DF + 
Sbjct: 114 YKNPVIAITGSMGKSSTRMLTASLLKDYPIQENRGNNNIRAAIYANML-KLIKNPDFAVI 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E  ++ +      +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +
Sbjct: 173 ETSLNAINHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAII 232

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D  F + L  ++H    + + ++    + D  L+  +    +  ++++++       +
Sbjct: 233 NGDTMFADYLIDQAHQY-TQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNY 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               +           I+ +   ++    + L  F P     K           TLID++
Sbjct: 292 QINTFSDGMISNTLAAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDT 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NA+  +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N  ++ 
Sbjct: 352 HNASLPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYIL 411

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLL 464
                +  + + + ++ H+ Y    + +   ++    +  VV++KSS+    F  +   L
Sbjct: 412 CLDDDLRPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFSEVAKTL 470


>gi|293375146|ref|ZP_06621434.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292646252|gb|EFF64274.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 460

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 83/456 (18%), Positives = 180/456 (39%), Gaps = 17/456 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59
           M  L +   + + I G  +       ++ +   ++ +       F +    +D   FI  
Sbjct: 1   MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +      +V +  +       +  +  V+ +  +        R +    +IA+TG+ GK
Sbjct: 59  YLP---CAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L    KT   + S N        L ++   V+  ++E  ++  G I+  +
Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD   + +  + 
Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I     +G  +N+D+Q    +   +     + +  K  +V   G G H   N +  
Sbjct: 236 FKGKI---IYYGVGENSDYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +      +I    +    +     +          LI +++N NP S++A+I  
Sbjct: 293 IAAAYEVGISYRDSI---KLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +I+ + +   IA++G +  +G+ S+  H  + +++  Y++  +   G     +     
Sbjct: 350 MCEIAKNRKK--IALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           R+     V+   + +G+   +   +     ++ K S
Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTKCS 443


>gi|315122414|ref|YP_004062903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495816|gb|ADR52415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 500

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 137/454 (30%), Gaps = 35/454 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIG 79
           +  ++ IS DSR I     F AI G   DGH FI  AV +GAG++VV+    +   + + 
Sbjct: 27  ERRIHDISSDSRHIQVGWMFVAIVGNQEDGHFFIPQAVAQGAGVIVVSSMHQSQDFSHVV 86

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+  VD+    L+ +A     +    I A+TG+ GKT+    +         +   
Sbjct: 87  KADIPILVVDNTRRFLSLVAARLYGKHPEKIFAVTGTSGKTSVASFVQQISQHAGLSSFQ 146

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVRPH 185
           IG  +    +     R+       I +                 S  G  +     ++  
Sbjct: 147 IGPISLMPSLQREDNRLTTPSPVYIAQALAYLASQGTTHVSIEASSHGLDQHRLDGIKFI 206

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               T     H+      +   +AK  +FE L   G+  +  ++   +    K       
Sbjct: 207 AGSFTNFGRDHIDYHKTQQAYFNAKMRLFEELLPKGSPAVICNNDD-DSWSNKVMERAHN 265

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                         +R           +V +  +  +          A  +   L    +
Sbjct: 266 AGCRVLSVGYKGTFIRLKNLTQINDKQQVSISVEGKDFD-FLFPLQGAFQVSNALVSAGL 324

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A        +           R+    N      I   Y   P S++  +  L  I  
Sbjct: 325 CIATGIDVPVVIEYLEKVNVIPGRFEFIGNNSKGGRIYVDYAHTPNSLEMVLRNLRNI-- 382

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
              GR I V G     G         +   ++L       ++       +  A++  +  
Sbjct: 383 -TSGRIIVVFG----CGGDRDRGKRKIMGKIALELADLSIVTDDNPRSENPQAIRAEIIN 437

Query: 421 SIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                  E           S L   DV+VV  K 
Sbjct: 438 GFPGFIEEGNRQEAIRIAISMLNKEDVLVVAGKG 471


>gi|325838831|ref|ZP_08166678.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490694|gb|EGC93003.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 460

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/456 (18%), Positives = 180/456 (39%), Gaps = 17/456 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP-QEAFFAIKGPHYDGHDFILH 59
           M  L +   + + I G  +       ++ +   ++ +       F +    +D   FI  
Sbjct: 1   MKKL-SIGTIRKVIHGSLVKGNDNLMISSVVTQAKQVESSNTLLFLLNPRTFD-WRFIKK 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +      +V +  +       +  +  V+ +  +        R +    +IA+TG+ GK
Sbjct: 59  YLP---CAIVTDRPIGHCPFGNNCTIIKVNKIKESYYDFIDFYRNQFDIPVIAVTGTCGK 115

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTTK+M    L    KT   + S N        L ++   V+  ++E  ++  G I+  +
Sbjct: 116 TTTKDMTRHILKHFYKTEGTVKSTNGESKHLSYLMKLNDSVEAAVYETAVAAPGYIKKSS 175

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              +P I +IT I   HL     +E    AK E+ + + + GT+ LN DD   + +  + 
Sbjct: 176 RYFKPQIGIITNIGIDHLDQCKTLEGYIKAKGEMVKAVGEKGTLILNADDDNIKKISLED 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               I     +G  +NAD+Q    +   +     + +  K  +V   G G H   N +  
Sbjct: 236 FKGKI---IYYGVGENADYQASNIEFVPKGMSYILTVNNKRYKVFIPGYGVHQVYNSMAA 292

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     +      +I    +    +     +          LI +++N NP S++A+I  
Sbjct: 293 IAAAYEVGISYRDSI---KLLPSFKHLNSHFEVMKGLNQCQLIVDTWNINPTSLEASIKT 349

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +I+ + +   IA++G +  +G+ S+  H  + +++  Y++  +   G     +     
Sbjct: 350 MCEIAKNRKK--IALVGSIDALGKNSRQLHQKVGDMICQYDLDVLITIGSQARYIALQCR 407

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           R+     V+   + +G+   +   +     ++ K S
Sbjct: 408 RNGFKGKVYSFSSTEGVRRLLNQIVDKDTTLLTKCS 443


>gi|152998947|ref|YP_001364628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS185]
 gi|151363565|gb|ABS06565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS185]
          Length = 499

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 152/486 (31%), Gaps = 53/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110
           GA  V+V+TD     G +             V  +   ++ +A            +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNVEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           I ITG+ GKT+T +++   ++S+ +K        N   G  +       D          
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTTDAITLMRQLHD 176

Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D      L            +S    + A F  +  K   +     +  
Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++    +G     N+L  L  + +   D+    + +    P  GR +R+  A N 
Sbjct: 297 PEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + +A           L+ +  H  G    V G     G         L    
Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +            +   L  S               + +    GDV+
Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTLSQQALTQVDRIAAIKEVVALAKPGDVI 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LLAGKG 471


>gi|260462085|ref|ZP_05810329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031945|gb|EEW33212.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium
           opportunistum WSM2075]
          Length = 484

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 84/453 (18%), Positives = 154/453 (33%), Gaps = 35/453 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V GIS DSR + P   FFA+ G   DG  +   A ++GA  +V        +G 
Sbjct: 16  ASADLEVTGISSDSRQVKPGVIFFALAGSKADGSAYAADAARRGAVAIVTAKGST--VGG 73

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             IPV  VDD   AL   A         T++A+TG+ GKT+                A I
Sbjct: 74  HPIPVLAVDDPRLALALGAARFFGNQPQTMVAVTGTSGKTSVAAFTRQIWEQAGYAAASI 133

Query: 141 -----------GSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHI 186
                         +     P+ L ++  +  D G+    +  S  G  +     V+   
Sbjct: 134 GTTGVVAPGRNEYGSLTTPDPVALHQLLKELADAGVTHASMEASSHGLDQRRLDGVKLAA 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T +   H+     +E+   AK  +F+ L   G   + + D  +     ++       
Sbjct: 194 GGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADDPWSAPTIQAARAAGLE 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  +   +L++ +    +   EV+  G   E+     G     N L++ G+    
Sbjct: 254 VLTVGRHGDF-LRLKRVEHERHRQRAEVEANGVLYEIDLPLAGDFQISNALVSAGLAIST 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A+ +L       GR        N      +D ++  +        +VL+ + P 
Sbjct: 313 GIPTAKALMSLEKLKGAPGRLDLVGTTANGA-PVYVDYAHKPDALE-----NVLTSVRPF 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRS 421
             GR + V G     G         +   ++      V ++  +  +     ++ A+  +
Sbjct: 367 TTGRVMVVFG----CGGDRDRGKRPIMGEIATRLADVVIVTDDNPRSEVPETIRAAIMAA 422

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
                             + L  GD ++V  K 
Sbjct: 423 APGAIEIGDRRKAIHDAVAMLDAGDTLIVAGKG 455


>gi|218708481|ref|YP_002416102.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
 gi|218321500|emb|CAV17452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus LGP32]
          Length = 494

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 147/460 (31%), Gaps = 42/460 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA 76
            +    V  + +DSR+I   + F AI G   DG  FI  AV +GA  V+     +     
Sbjct: 21  ELDAIVVEQLELDSRTIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVIAQASDDKAHGL 80

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131
                ++PV  V ++   L++LA          +I +TG+ GKTT  +++   L      
Sbjct: 81  VEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIF-ELGMSHLGEIRFLTHLV 182
                 +       +    N  G  + + R   +   +  ++  + +S  G ++     +
Sbjct: 141 SAVMGTTGNGFLDNLKIAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKAL 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T ++  HL     +EE A AK  +F   +    +    D+     +   S+A+
Sbjct: 201 NFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWVSDLSNAI 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +      G                    +         ++    IG   A N+L+    
Sbjct: 261 AVSLSPLTG--YQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFST 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D    +   S   P  GR + ++             + +A           L+ 
Sbjct: 319 LLSLGIDKQILVDTASQLQPVIGRMELFQTPNKAKVVVDYAHTPDA-------LEKALAA 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H  G+  A+ G     G    +    +  V +      + +S  +            
Sbjct: 372 LRVHCSGQLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L                 F        D++++  K 
Sbjct: 428 MLAGLSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467


>gi|294142809|ref|YP_003558787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
 gi|11761330|dbj|BAB19197.1| MurE [Shewanella violacea]
 gi|293329278|dbj|BAJ04009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shewanella violacea DSS12]
          Length = 492

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/478 (18%), Positives = 165/478 (34%), Gaps = 49/478 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +DLL       +        NG+S+DSR+I   + F A+ G   DG  FI  A ++GA 
Sbjct: 3   LNDLL----APWLHYSGSESFNGMSLDSRAITVGDLFIAVPGHLVDGRKFIQAAFEQGAV 58

Query: 67  LVVVNTDMVASIG--------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             +V+TD     G        SL I  F ++  L A+   A     + +  +I +TG+ G
Sbjct: 59  AALVHTDEPTEHGQVLSEASASLQILFFQLNQELSAIGAQAYPLAPQ-RLKLIGVTGTNG 117

Query: 119 KTTTKEMLTIALS-SIKKTYACIGSYNNHIG----------VPLTLARMPVDVDFGIFEL 167
           KT+  +++   ++   K+        N   G           P+T+A    D D    +L
Sbjct: 118 KTSITQLMAQLVALQGKQASLMGTLGNGLWGDLVESGNTTADPITIAAQLQDFDLAGADL 177

Query: 168 GM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S  G I+     V   +AV T ++  HL     ++    AK  +F+      ++ 
Sbjct: 178 CAMEVSSHGLIQNRVAAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRLFKFSSLQSSLI 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D+   + L  +  A  +        +  A    +      +     +       ++ 
Sbjct: 238 NLDDEVGRQWLSEEQEAKHLGFSICSAHADAASIYTQDNHLHHQGVMAMLVWPEGRAKLA 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N++  LG + ++  D+   + ++ +  P  GR +R+  A           
Sbjct: 298 SPLLGSFNLSNLVAALGALYLIGYDMQALVASVPLLTPVAGRMERFTTANGVTIVVDYA- 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                  S  A    L  +  H EG+   + G     G         L    +      V
Sbjct: 357 ------HSPDAIEQALKALRGHCEGQLWCLFG----CGGDRDKGKRPLMAQAAETYADKV 406

Query: 405 WLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +         +  +   L     V      +     + +    GD+V++  K 
Sbjct: 407 MITSDNVRSESPEAIIEDILVGLEAPERVLTQVNREQAIRQVVALAKPGDLVLLAGKG 464


>gi|329942723|ref|ZP_08291502.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|332287320|ref|YP_004422221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|313847904|emb|CBY16899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila psittaci RD1]
 gi|325507269|gb|ADZ18907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Chlamydophila psittaci 6BC]
 gi|328814983|gb|EGF84972.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Chlamydophila psittaci Cal10]
 gi|328914563|gb|AEB55396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila psittaci 6BC]
          Length = 483

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 156/472 (33%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A KG H DG+DF   A++ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIASKGKHSDGNDFSHLAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  V  +         L +      D+      LA            ++ ITG+ GKTT 
Sbjct: 61  AIAVASS----IYNPFLPVVQIISSDLPQLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++     +  K    IG+  + +G               + +              + 
Sbjct: 117 SHLIKFLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAEMVKSNLSAAVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +G        V   + V+T I   HL   S  EE   AK ++F  L  +G   +N D
Sbjct: 177 VSSIGLAVNRLANVHFDVGVLTNITLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVNND 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +       + A  I    ++G  ++AD++    +     +  ++  +G++       I
Sbjct: 237 LHYAAQFIEATQAQPI----TYGIEQHADYRASNLRFSPFGTDFDLLYKGETFACSSPLI 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L  + +           +  +S     E    R     +      ID ++  
Sbjct: 293 GQHNIYNVLAAISVAHQRLGCDLQQL--ISAVANVETPRGRLEPVFSGPCPIYIDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +  ++      L  + P  +GR I V G     G         +   +       V  + 
Sbjct: 351 D--ALDNVCKTLQALLPQ-DGRLIVVFG----CGGDRDQSKRKIMAQVVEKYGFAVVTTD 403

Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              G     + + +                    +  S   D D+V+V  K 
Sbjct: 404 NPRGEDPEMIINEICSGFFKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|293391353|ref|ZP_06635687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290951887|gb|EFE02006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 488

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 151/466 (32%), Gaps = 46/466 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I I     +  +++DSR+      F AIKG   DG  +I  A+  GA  V+   D     
Sbjct: 10  IDIAGDINLTEMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALHNGASAVIFEADSAQQH 69

Query: 79  GSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
             +     IP+     +   L++LA           T++ +TG+ GKTTT ++L      
Sbjct: 70  LQVHYEQGIPLIAFYRLSENLSRLADVFYQYPSKHLTLVGVTGTNGKTTTAQLLAQWTQL 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIR 176
           +  T A +G+  N  G+   +          +                  + +S  G ++
Sbjct: 130 LGHTGAVMGTIGN--GLVGQVKEAANTTGSAVEIQSSLADFVAKGADFAAIEVSSHGLVQ 187

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V    AV T ++  HL     +E  A+AK  +F  L+    I    D      L 
Sbjct: 188 HRVESVHFSAAVFTNLSRDHLDYHHTMENYAAAKKRLFTELDSRYQIIDADDPVGAVWLA 247

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              HA+ +     F   +    +    +   + + ++ +    + E+    IG     N+
Sbjct: 248 EMPHAVAVSAKADFLPQQANWLKAVDVRFNHKGATIQFESSWGNGELQSPLIGAFNVSNL 307

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+    +  L   +   I ++       GR +                + +A        
Sbjct: 308 LLVTATLLTLGYPLSGLINSVHKLTGVCGRMEILHAPQKPTVIVDYAHTPDA-------L 360

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
              L     H  G+   + G     G    S    L   ++     HV  +  +      
Sbjct: 361 EKALQAARLHCRGKLWCIFG----CGGDRDSGKRPLMARIAEQLADHVIATDDNPRTEEP 416

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  + +       V               S V+ DV+++  K 
Sbjct: 417 KKIMADILNGFVHPQSVQVIHQRAQAIATAIKSAVENDVILIAGKG 462


>gi|254805554|ref|YP_003083775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
 gi|254669096|emb|CBA07665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha14]
          Length = 492

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|224541753|ref|ZP_03682292.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525357|gb|EEF94462.1| hypothetical protein CATMIT_00925 [Catenibacterium mitsuokai DSM
           15897]
          Length = 492

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 145/462 (31%), Gaps = 39/462 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
               +     +  I  DSR +     FF I+G   DGH ++  A+ +GA  +V +  +  
Sbjct: 6   ELFKVESDLKIESIHSDSRYVRKDSIFFCIEGLVTDGHKYVDDAIFQGAKCIVHSKPLRR 65

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
                 I    V DVL  LN++A          +  I +TG+ GKT    ++   L    
Sbjct: 66  YY--QGIVYVQVPDVLDELNRVADLFYDHPSYKMTGIGVTGTSGKTVVARVVARLLGRYL 123

Query: 135 KTYA-------CIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHL 181
           K             +     G       +  +    + E      L +S  G        
Sbjct: 124 KMGYVGNNGIEYGATMMQMTGTTPDPICLHRNFYNMVKENVKGFTLEVSSHGLALKRVDS 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   I V T     H+     I+ +  +  ++F  L++ G   LN D+  F    + ++ 
Sbjct: 184 VNFSIVVFTNAYEEHMDFHGTIDNLMVSYEKLFRLLQEGGYAILNADEVRFNHFLSMNYK 243

Query: 242 --LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I S+G    AD   R  +   + S  ++ ++ +   V    I      N L  
Sbjct: 244 DLSEHAKILSYGIHHKADIMARNIEYFIDHSTFDICIKNRLFHVEVPIIAPFNISNTLAI 303

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  +  L    +  + A+    P EGR +               +  +            
Sbjct: 304 LTTLYALEMTPEEIVNAIKYIQPVEGRMEVVPVKQPFHIIVDYCQHAHN------FEEVF 357

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLAL 414
                  G G  IAV G     G         +  + + Y   +V L+        +  +
Sbjct: 358 KFVYGVKGNGHLIAVFGAP---GRKDIHKRSKIGALANKY-CDYVILTEQDERDDDIEGI 413

Query: 415 KDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + +   I                    +   GDV+++  K 
Sbjct: 414 CEQIQEQIVDPISVIITNRRFAIQQAIDAACAGDVILILGKG 455


>gi|312959052|ref|ZP_07773571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
 gi|311286822|gb|EFQ65384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas fluorescens
           WH6]
          Length = 487

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 156/455 (34%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    D    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGGKFDGRAHIADALQRGAAAVAYEVDGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140
           P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL  + +    + 
Sbjct: 75  PLIPVKGLAKQLSDIAGRFYGEPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 141 -----GSYNNHIGVPLTLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIA 187
                       G+  T   + V                + +S  G  +     +   +A
Sbjct: 135 TLGTGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A+AKA++           +N DD F   L A+     + + 
Sbjct: 195 VMTNLSRDHLDYHGTMEAYAAAKAKL-FAWNDLKCRVVNLDDEFGRHLAAQDSESRLISY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +  +A    R+ +   E     +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLQDSSAYLYCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L       GR    R    +    ++D ++  +         VL  + PH 
Sbjct: 312 YALDEILNVLPKLEGPAGR--MQRLGGGEQPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDAL 418
           +G+ + + G     G         L   +       V ++         G     ++   
Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEIVERLADGVLVTDDNPRTEDPGQIFDDIRAGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +    +          + +S    DVVV+  K 
Sbjct: 421 KDASKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455


>gi|163787486|ref|ZP_02181933.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877374|gb|EDP71431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 487

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/477 (14%), Positives = 143/477 (29%), Gaps = 48/477 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L  +  +++       VN I  DSR I   + F AI G   DGH +I   +  
Sbjct: 1   MMILKDILYKVTINAVVGSTSVSVNKIEFDSRQIQVNDVFVAISGTVTDGHRYIDRVIDA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  +V    ++       +    V +   AL  +A            +I +TG+ GKTT
Sbjct: 61  GATTIVCE--VLPEALKDDVTYIEVANSNKALAYMAANFYEHPSENLKLIGVTGTNGKTT 118

Query: 122 TKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGI--FEL 167
              +L                           + +           +    D G+    +
Sbjct: 119 VSSLLYQLFKKAGYKVGLLSTVKIMVDTTTYKATHTTPDSLTINRYLKQMNDEGVEFCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +  T  +R    + T ++  HL       E    K   F+ L K      N 
Sbjct: 179 EVSSHGIHQSRTEGLRFTGGIFTNLSHDHLDYHDTFAEYRDVKKLFFDQLPKDAFALSNM 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +   + A      Y++     AD++ +  +       ++V        ++   
Sbjct: 239 DDKNGLAMLQNTQAKK----YTYALKNYADYRAQILENEFSGLLLKVNDSELWTRLIGSF 294

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             Y++         +              L +    E    R++  ++    T + + Y 
Sbjct: 295 NAYNILAIYGTAELLGLEKDEI-------LRLISELENVSGRFQYFISDEKITAVVD-YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++K  +  ++ I    E     V       G             ++    + V  +
Sbjct: 347 HTPDALKNVLETINNIRTKNEELITVV-----GCGGDRDKTKRPKMAHIASTLSTKVIFT 401

Query: 408 GFHVLA-----LKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +     + + + + +     +                      D++++  K 
Sbjct: 402 SDNPRSEVPETIIEDMEKGVEPQNFKKTLSITDRKQAIKTACQMADTRDIILIAGKG 458


>gi|265754707|ref|ZP_06089759.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
 gi|263234821|gb|EEZ20389.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bacteroides sp. 3_1_33FAA]
          Length = 484

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 160/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +++ I  + I       ++GI++DSR I P   F A+KG   DGH +I  A++KG
Sbjct: 1   MKLEKIIKGITVNEIIGDMAQEISGINMDSRLIEPDHIFIAVKGTQTDGHTYIQKAIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV     +      ++    V+D    + KLA        SK  ++ +TG+ GKTT 
Sbjct: 61  ARTVVCE--NLPETLIENVTYIKVNDTEDVVGKLATTFYGDPTSKLELVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTYACIGSYNN---------HIGVPLTLA-----RMPVDVDFGIFELG 168
             +L             I +  N             P  +          D       + 
Sbjct: 119 ATLLYNMFRKFGYKTGLISTVCNYIDEEAIPTDHTTPDPITLNKLLGRMADEGCKYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     ++    + T +   HL     +E    AK   F+ L KT     N D
Sbjct: 179 VSSHSVAQKRIGGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKAFFDSLPKTAFALTNLD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     ++++     +DF+ +  +   E     + L   ++EV    I
Sbjct: 239 DKNGLVMTQNTKA----KVHTYSLRSLSDFKGKVLEDGFEG----MLLDINNVEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L   G   +L    +  + ALS   P  GR    R             + +A
Sbjct: 291 GRFNASNLLAVYGTACLLGKKTEEVLLALSTLRPVAGRFDSLRSPKGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V+G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGNVITVVGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L +     V                    DV++V  K 
Sbjct: 402 DNPRFEEPQEIINDMLAGLTKEDMRKVISIADRKEAIRTACMLAQAKDVILVAGKG 457


>gi|330987129|gb|EGH85232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 486

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKG 455


>gi|56807439|ref|ZP_00365398.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Streptococcus
           pyogenes M49 591]
          Length = 342

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 151/340 (44%), Gaps = 22/340 (6%)

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +TY   G+YNN IG+P T+  MP D +  + E+G  H+G+IR L+ + RP IAV+T +  
Sbjct: 6   QTYKTQGNYNNEIGLPYTVLHMPDDTEKIVLEMGQDHMGDIRLLSEIARPRIAVLTLVGE 65

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           AHL  F   ++IA  K +I +G+   G +    D      L           +  FG  +
Sbjct: 66  AHLEYFGSRDKIAQGKMQIVDGMNSDGILIAPGDPIIDPYLPENQM------VIRFGNQQ 119

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D          ++  +       +  V     G + A N ++   +  +L    +  I
Sbjct: 120 EIDVTG----IQEDKDSLTFTTNVLATPVSLPLPGKYNATNAMVAAYVGKLLAVTDEDII 175

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            AL         G R           ++ + YNANP +M+  +   + I+ +  G++IAV
Sbjct: 176 AAL---QTVTLTGNRTEWKKAANGADILSDVYNANPTAMRLILETFANIAKNPGGKKIAV 232

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYS---- 427
           L DM E+G+ S   H  L + L+  NI  +   G H+  L     +   +  VHY     
Sbjct: 233 LADMKELGKDSVILHSQLIDSLTSGNIDQLVFYGDHIKELARLASQVYPAEQVHYFLKAE 292

Query: 428 --ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  + +  ++Q+ L   D +++K S+S    +L++ L+
Sbjct: 293 QEDQFEAMAQYVQNILNPFDQILLKGSHSMSLEKLVDRLV 332


>gi|217971628|ref|YP_002356379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS223]
 gi|217496763|gb|ACK44956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS223]
          Length = 499

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 151/486 (31%), Gaps = 53/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGSLSIP-------VFGVDDVLGALNKLAVAARL------RSKATI 110
           GA  V+V+TD     G +             V  +   ++ +A            +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHRDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           I ITG+ GKT+T +++   ++S+ +K        N   G  +       D          
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D      L            +S    + A F  +  K   +     +  
Sbjct: 237 STLGHGLLNLDDTVGESWLTELKSVPAQMWGFSIEGHQAAAFYTKDAKFDDQGVSATLVW 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A N 
Sbjct: 297 PEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTAKNI 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + +A           L+ +  H  G    V G     G         L    
Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCVGDLWCVFG----CGGDRDKGKRPLMGQA 405

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +            +   L                  + +    GDV+
Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LLAGKG 471


>gi|239947619|ref|ZP_04699372.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921895|gb|EER21919.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 321

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 141/303 (46%), Gaps = 60/303 (19%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L +A+             N +  +S+ +   + F A++G   DGHD++L A
Sbjct: 1   MI--WNSETLNKALGITISNF---INCNEVQFNSQDVKKGDLFIALQGNR-DGHDYVLDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  V+V+  +  +       +  V+D   AL K+A+  R  SKA  IAITGSVGKT
Sbjct: 55  IDKGAVAVIVSKQIDIADKD---KIILVEDCFEALQKMALYKRENSKAKFIAITGSVGKT 111

Query: 121 TTKEMLTIALSSIKK--------------------------------------------- 135
           +TKE L   L+                                                 
Sbjct: 112 STKEALKTLLTEANYKSLDLLYNEANKEEFEGNTERSTAAYTLVREDVSTGLTYKLPLEA 171

Query: 136 ------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +A  G++NNH+G+ + LA M  D ++ IFELGM+H GEIR L  +++P+IA+I
Sbjct: 172 SYIRGLIFASRGNFNNHLGLLINLASMADDTEYAIFELGMNHKGEIRELVQILKPNIAMI 231

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I+ AHL  F+  EEIA AK EIFE   K     +N D + +  + +    L I  I+S
Sbjct: 232 TNISEAHLEFFNSFEEIAEAKCEIFENFSKNDIAVINADTNCYNKILSILKKLSITDIHS 291

Query: 250 FGK 252
           FG+
Sbjct: 292 FGR 294


>gi|298488530|ref|ZP_07006560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156871|gb|EFH97961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 487

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRSLMAEVVERLADGVWVTDDNPRSESPAIIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|309806966|ref|ZP_07700948.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166586|gb|EFO68783.1| Mur ligase family, catalytic domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 198

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/197 (32%), Positives = 96/197 (48%), Gaps = 4/197 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++  AI      +     V+ +  DSR       F  + G   DGHD++ +AV  GA 
Sbjct: 5   LSEIANAIGCDL-SMNESTIVSSVVFDSRKAVADSLFVPLVGER-DGHDYVANAVANGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
             +   D   +    +IPV  VDD L AL KLA     +   T++ ITGS GKTTTK+M+
Sbjct: 63  AALWQKDH--ANRPENIPVLVVDDTLLALQKLAKYYLQKVNPTVVGITGSNGKTTTKDMV 120

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS     +    ++NN IGVP+T+  M    +  + E+GM   G++  L+ +V P +
Sbjct: 121 AAVLSKRFNVHKTQANFNNEIGVPITILEMKPTTEILVLEMGMDRAGQLHHLSEIVCPDV 180

Query: 187 AVITTIAPAHLSNFSGI 203
            VIT I  AH+  F   
Sbjct: 181 CVITMIGEAHIEFFGYK 197


>gi|300118069|ref|ZP_07055817.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
 gi|298724380|gb|EFI65074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus SJ1]
          Length = 243

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 6/200 (3%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS++I     F  I      DGHD++  A+ 
Sbjct: 1   MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNLFVPII--RVKDGHDYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G         
Sbjct: 117 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 176

Query: 183 RPHIAVITTIAPAHLSNFSG 202
                    +   + + F  
Sbjct: 177 NGFRGNGPKVDVKNQNLFKN 196


>gi|46445948|ref|YP_007313.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399589|emb|CAF23038.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,
           6-diaminopimelate ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 492

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 159/479 (33%), Gaps = 48/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + I+        +  + G++ +S+S++P   F A KG  +DG+ +I  A+Q G
Sbjct: 1   MKLKELFRNIESCQFKGSQEVLLTGLTANSKSLSPGNLFIAKKGKMFDGNSYIKEAIQSG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++ +   +       +      +     + LA      S     ++ ITG+ GKTT 
Sbjct: 61  ACAILTD---LFDPCLKKVVQIIHPNPNEIESILARDYYQNSSEELFMVGITGTNGKTTI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPV-------DVDFGIFE 166
             ++   L         IG+    +G          P  +    +            + E
Sbjct: 118 SFIIKYLLDLFHGPCGLIGTIEYIVGSHRYQATRTTPDVIENHKMLYEMSLSGTKSAVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTI 223
           +  SH    + + ++    +AV + +   HL     +E   +AK  +FEG          
Sbjct: 178 V-TSHALIQKRVEYI-DFDVAVFSNLTLDHLDYHLTMENYCAAKNCLFEGLGEQPTKKRN 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +    +          ++G  K AD Q    K  S+ + + +  QG+++E 
Sbjct: 236 EKWAIVNIDDPWCEQIVKGCQAHRLTYGIDKPADLQASHIKLSSQGTSINLTYQGQTIEC 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N L  +G++      +   ++ ++     +GR    +   N      ID
Sbjct: 296 FWPLLGRFNIYNCLAAIGVLLTQNIPLKEIVEKMACIPNVKGR--LEKVLNNLELDIYID 353

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +  S     +VL  +S   +GR + + G     G            + S      
Sbjct: 354 FAHTDDALS-----NVLKTLSEIKKGRLLTIFG----CGGDRDPSKRPKMAIASEQYSDL 404

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  +            +                             GD++++  K 
Sbjct: 405 SIVTSDNPRSENPISICQEIVTGFVNPNSFIVEIDRRAAIQKAIEIASPGDMILIAGKG 463


>gi|228472662|ref|ZP_04057422.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
 gi|228276075|gb|EEK14831.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Capnocytophaga gingivalis ATCC 33624]
          Length = 494

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 141/474 (29%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LLQ ++           V  I+  SR I P   FFAIKG H DGH FI   + +   
Sbjct: 3   LKELLQGVEVLQTIGDTSQEVGNITQSSRDITPNTLFFAIKGAHTDGHRFIPEVIAQQGK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
           ++VV    +    +  +    V D   A+ ++A            ++ +TG+ GKTT   
Sbjct: 63  VLVVED--LPEALAEGVTYVQVTDTSRAMGQIAAHFYGHPSEQLRLVGVTGTNGKTTIAS 120

Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMS 170
           +       +            Y        H   P       + R  V        + +S
Sbjct: 121 LSYQLFRQLGYKVGLISTIAIYIDQEREETHNTTPDVLTLNKVLRRMVGQGVTHCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G        +     V T +   HL       +    K + F+ L KT     N +D 
Sbjct: 181 SHGIALHRIEGLVFAGGVFTNLTQDHLDFHETFAQYRDTKKKFFDHLPKTAFALTNIEDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   + A       ++   + ADF+ +  +       + V        ++     Y
Sbjct: 241 NGAYMLQNTSAHKS----TYALGRAADFKGQLLESTFAGMTLRVGNHEVWTSLIGRFNAY 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           ++       + +           ++ L+          R++  ++    T+I + Y   P
Sbjct: 297 NLLAIYATAVLLGEE-------PLEVLTQISTLRSVAGRFQYFVSPSGVTVIVD-YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            +++  I  +  I    +     V       G         +   ++      V L+   
Sbjct: 349 DALQNVIETILDIKDPSQRLITVV-----GCGGNRDKGKRPIMAHIATSLSEKVILTSDN 403

Query: 408 --GFHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +   I                           GD+V++  K 
Sbjct: 404 PREEDPEEILREMEAGITPENQHKSMTVTDRRQAIKVACHLAQKGDIVLIAGKG 457


>gi|145220559|ref|YP_001131268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206723|gb|ABP37766.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium phaeovibrioides DSM 265]
          Length = 515

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 156/484 (32%), Gaps = 40/484 (8%)

Query: 1   MNPLWTFHDLLQAIQG-HSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+       LL A+     +   P +G ++ IS DSR I     F A++G   DGHDF+ 
Sbjct: 1   MSTSLPVSRLLDALTAPEILSDAPCRGSLSMISSDSRDIEQGGLFVAVRGFQADGHDFVA 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGS 116
            AV +GA  V+   +         +      D   AL + A A       +  +I ++G+
Sbjct: 61  DAVSRGAAAVICE-EFPGGDVPPGVCFIKAPDARLALAEAAFALYGGASEQLDVIGVSGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN---------------NHIGVPLTLARMPVDVD 161
            GKTTT  ++   L+        IG+                    G+   L RM  +  
Sbjct: 120 NGKTTTAMLIAAMLNHNGIRCGYIGTGRAVIGDEEIPLERTTPEAHGLHRLLRRMVDEGC 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +  + +S    +    H VR  +AV T +   HL     +E  ASAK  +F  L   G
Sbjct: 180 RAVA-MEVSSHALMLQRVHGVRFRVAVFTNLTVDHLDFHGSMEAYASAKQRLFRQLLPEG 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N DD     +               G  + AD  +      +E +  + Q     +
Sbjct: 239 RAVFNMDDPRAPFMAEGLPPASCSGCSLSGVERRADRSVCGEWFLAEVTGEDAQSSHLRL 298

Query: 282 EVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                            N++  L   +   A   +   A + F        R        
Sbjct: 299 SFPDGMFDGELLLPGRFNVMNALLAAATCHAMGVSGGAAAASFPFLPPVQGRMERVDGGP 358

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                   Y   P +++  +  L+++ P   GR   V G     G         +   ++
Sbjct: 359 GRVRAIVDYAHTPDALQRVLQTLARLKP-AGGRLAVVFG----CGGDRDPSKRPVMGRIA 413

Query: 398 LYNISHVWLS-----GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVV 449
                 V L+           + D + + +                   + L + D+++V
Sbjct: 414 EEIADMVILTSDNPRSEDPERILDDIEQGMSCIGHRRIADRGTAISTAVAELGELDILLV 473

Query: 450 --KS 451
             K 
Sbjct: 474 AGKG 477


>gi|169827841|ref|YP_001697999.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
 gi|168992329|gb|ACA39869.1| UDP-N-acetylmuramyl pentapeptide synthase [Lysinibacillus
           sphaericus C3-41]
          Length = 457

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 102/410 (24%), Positives = 165/410 (40%), Gaps = 13/410 (3%)

Query: 62  QKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +KG  LV+ +        +L    V  V  V  A        R      ++A+TG+ GKT
Sbjct: 54  RKGPSLVISDKPATELKNALDNTTVLHVKSVAQAYWTFIEYYRGLFHIPVVALTGTCGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TTKEML    S   +  A + S N        L  +       IFELG+ + G I+    
Sbjct: 114 TTKEMLKHIASKHWQVQASVSSKNEPRQSLPYLTGVDDKTQAAIFELGLGNTGNIKHQCM 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           + +P I +IT I   HL     +E    AKAEI EG+   GT+ +N DD+  E +  +  
Sbjct: 174 IYQPTIGIITNIGVHHLDGCLNLEGYIKAKAEIVEGIRADGTLIINADDANIEKISYQKF 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              I     FG   +AD++    +         +++      V   G G H   N L  +
Sbjct: 234 KGKIIK---FGLQDSADYKASAIQFAHTGMKFVLEVADTKYNVFVPGYGEHQVYNALAAI 290

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
              S +   +  AI  L  F       +        G  T+ID+++  NP S++AA+ VL
Sbjct: 291 AACSEMGLSIRQAIAGLRSFK---QMARHLEFTTGLGDSTIIDDTWTNNPTSVEAALKVL 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
             +    +   I VLGD+  +G   + +H ++   ++   I  +   G    A+ D   +
Sbjct: 348 DTVGKEKK--VILVLGDIKRLGNFEEKYHREIGSKVAERQIDTLITIGKRAEAIADQAKK 405

Query: 421 ---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLE 466
                 VH  + + G+   ++  L    +V++K   S        N L  
Sbjct: 406 DGTKAEVHTFKDVIGVLEILKPKLDADTIVLIKGPMSSKSMIEFANNLKN 455


>gi|71735413|ref|YP_276235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555966|gb|AAZ35177.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320322455|gb|EFW78548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330076|gb|EFW86063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 487

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|150391164|ref|YP_001321213.1| Mur ligase middle domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951026|gb|ABR49554.1| Mur ligase, middle domain protein [Alkaliphilus metalliredigens
           QYMF]
          Length = 403

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 142/368 (38%), Gaps = 12/368 (3%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITGS GKTTTKEML   L +  K +    + N           +       + 
Sbjct: 41  PTVPTIAITGSAGKTTTKEMLASILQTKWKIFKSKENKNFQKNTQKHARMIKPWHQGVVL 100

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E GM      +     ++P+IAVIT +  AH   F    ++ +          K   I  
Sbjct: 101 EFGMGEANTGKMHCSHIQPNIAVITNVGSAHYGVFGNSIKLTAKAKSELIKYMKPEGILY 160

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D     L       G    ++      +D+Q    K   +    +V+L  +  +   
Sbjct: 161 INNDDNNSKLLQIKGFKGEI--FTVSIKNKSDYQAVNIKYVDQGMTFQVKLDDQLEDFFI 218

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              GYH   N L  +G+              L  +     R   Y          ++D+S
Sbjct: 219 PTFGYHNVINALFAIGVSHHQKFSPSEIKVGLKNYEVPVRRLNHYELPNGL---VILDDS 275

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y+ANP + KAAI VL ++    +   + +LG M E+GE S   H ++ + L+   +  + 
Sbjct: 276 YSANPEATKAAIDVLVELGKIKKK--LVILGSMLELGEYSIEGHKEVGKYLAQNKVDKIV 333

Query: 406 LSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           + G     +         P S  + ++++ + + L++Q  +     ++VK S      + 
Sbjct: 334 IIGKEARWIGKGAVEAGYPPSRILLFTKSRNKMHLYLQKLIKPNMAILVKGSKLMQMNKT 393

Query: 461 INLLLEEF 468
           +N LL+ F
Sbjct: 394 LNYLLKNF 401


>gi|169826861|ref|YP_001697019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
 gi|168991349|gb|ACA38889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           2 [Lysinibacillus sphaericus C3-41]
          Length = 493

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 162/473 (34%), Gaps = 44/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL A+    I  +    V  I +DSRS+ P   F  IKG   DGHD+   AV  GA 
Sbjct: 8   AEELLSALPLKKIIGMLPDQVTDIVVDSRSVQPNSMFVCIKGYTVDGHDYAQKAVDGGAT 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
           +VV   ++        I    V D   A+  LA           T+I +TG+ GKT+   
Sbjct: 68  IVVTERELPLGEM---IAQVIVKDTDRAVGLLAAKFFDYPSKDITMIGVTGTNGKTSVTG 124

Query: 125 MLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVD---VDFGIFELGM----------S 170
           ++   +  + +  A       N  G+    A    D       IF   M          S
Sbjct: 125 IIQNIMHGMGEKSALSGTIGFNLNGILYESANTTSDALSTQQMIFRAKMEGCRLMTMEVS 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G        V   +A+ T +   HL     +EE   AK  +F  L +          +
Sbjct: 185 SHGLALGRLAGVDYDVAIFTNLTHDHLDFHGTMEEYGHAKGLLFSQLGQDLEKNKFVVLN 244

Query: 231 FFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             +    +  A+    ++++G K++ ADF+    +     +  +V++      V  + +G
Sbjct: 245 ADDAWSERYAAMTPFPVWTYGLKNETADFRAINCEYHDYMTSFDVEMSEGIYRVKMNLLG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  +         ++  I+ +    P +GR ++    L    F     + +A 
Sbjct: 305 EFNIYNVLAAMVAFYGRGYSMEAIIEQIEQLPPVKGRMEKVCSELPVQMFVDYAHTPDA- 363

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                     +    P+ +G+ I ++G     G   +S    +AE  S     +V L+  
Sbjct: 364 ------IEKAIEAAQPYKKGKLIFLVGT---GGNRDKSKRPAMAEKASAA--EYVILTTD 412

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        L   +    +                    GD+++   K 
Sbjct: 413 DPRYEDYNSITGDLAKGML-HDNFACIGDRAEAVRHAIEVAEPGDMIIFAGKG 464


>gi|226328334|ref|ZP_03803852.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
 gi|225203067|gb|EEG85421.1| hypothetical protein PROPEN_02228 [Proteus penneri ATCC 35198]
          Length = 921

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 153/480 (31%), Gaps = 51/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL A+        P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G 
Sbjct: 431 NLSDLLGALGIQ----APSLMLKDMTLDSRKAASGDLFIAIKGHETDGRRYIPQAIAQGV 486

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+     VA+ G +     IP+  +D++   L+KLA     +   K  +I +TG+ GK
Sbjct: 487 SAVLAEAQDVATHGEIRESHGIPIIYIDNLNAKLSKLAGHFYHQPAEKLKLIGVTGTNGK 546

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------- 164
           TTT ++L      + +  A +G+  N  G+   +          +               
Sbjct: 547 TTTTQLLAQWAQGLGEISAVMGTVGN--GLLDHVVPAMNTTGSAVDIQLELQQLLNQGAT 604

Query: 165 -FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S  G ++     +    +V T ++  HL     +     AK  +F        I
Sbjct: 605 LTAMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEEAKWLLFSTHHSGEKI 664

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSME 282
               D    + L     A+ +    +  ++    F         +  + +          
Sbjct: 665 INADDAVGQKWLSRLPDAVAVTMENTLPQNWQGRFVKTTRINYHDAGATIHFSSSWGEGI 724

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L  L  +  L   ++  I A S   P  GR + +            
Sbjct: 725 IESPLMGAFNVSNLLCALATLLALGYPLNAVINASSSLTPVCGRMEVFSANNRPTVIVDY 784

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L     H  G+   V G     G         L   ++     
Sbjct: 785 AHTPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAVAEELAD 833

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +   L         E        +       D+++V  K 
Sbjct: 834 KVVITDDNPRSEEPQAIIQDILSGLMDPGRAIAIEGRAEAVTNVIMQADTNDMILVAGKG 893


>gi|327194627|gb|EGE61477.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CNPAF512]
          Length = 486

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 145/460 (31%), Gaps = 38/460 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G V    ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 14  LEAQLEGPVGLLDISGLSSDSRKVAPGNAFVAVAGTKADGAGFIADAAARGAVVAIASQP 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + A+     IPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 74  VDAA-----IPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 128

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179
               A IG+             +       + +              +  S  G  +   
Sbjct: 129 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+   A  T +   H+     +E   +AK  +F+ L   G   + + D  +     K+
Sbjct: 189 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSAQAVKA 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     + + G+  +     R      +Q+             +           +   
Sbjct: 249 AADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDI----PLAGDFQVANA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +       A++      G   R     +     L    Y   P ++    +V
Sbjct: 305 LVAAGLAMSTGVAPKAAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
           L+ + P   GR + V G     G         +   ++      V ++  +         
Sbjct: 362 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 417

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 418 RSEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 457


>gi|261391928|emb|CAX49390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis 8013]
          Length = 492

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  A+  GA  V  + D         ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|256545781|ref|ZP_05473137.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256398477|gb|EEU12098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 476

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 150/468 (32%), Gaps = 51/468 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   S  I     + G+S +S+ I     F AI+G  +DGH +I +A++ G
Sbjct: 1   MKIEKILKEISYISKNIQNDKEIVGVSSNSKEIKKDFIFVAIRGFEFDGHSYIENALENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  +V   D V     ++     V+D   AL K++            +I +TG+ GKTTT
Sbjct: 61  ASTIVYTNDDVEFKNEIN--YIKVEDARLALAKISNFLSDFPSKSLRMIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYN---------NHIGVP-----LTLARMPVDVDFGIFELG 168
             +++  L+ + +T A IG+                P       +             + 
Sbjct: 119 ANIVSFLLNKLGETCANIGTDGAFFNGKTLPTEHTTPEITDINYILNEAKKDGIKNVVME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G      + +     V T ++P H+     ++    AK  +    +K      +  
Sbjct: 179 TSSHGLCLKRNYGIAYEYGVFTNLSPEHMDYHKTMDNYFKAKMILLNHSKKQVVNLDDDY 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + +   +  + I    ++              +  ++  M ++     ++      
Sbjct: 239 GKKAKEIFKDALTISINEDSNY------------KAENIKRVDMGLEFFVNGVKFHLKRF 286

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L  + I + L   ++   KAL  F   + R +     L          +  +
Sbjct: 287 GMYDIYNSLCAIAIANDLGFKLEEISKALEGFKGVKSRFEFIENDLGINIVVDFAHTTTS 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    S+   +    +   +  +      G+ +      L  + + Y+I  V  + 
Sbjct: 347 -------FESLYKDLPKDRKKFAVYGIS-----GDRTPDIRRGLGRISAKYDIFSVITTD 394

Query: 409 FHVLALKDALP---------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  + +           +              +  S    GD V
Sbjct: 395 DPKFDTFENISNQIKEGVEENNGECIIIRNRKEAIKYAISHAKKGDFV 442


>gi|261401198|ref|ZP_05987323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
 gi|269208879|gb|EEZ75334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria lactamica ATCC 23970]
          Length = 492

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 146/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFCSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F   +    +    D+   EL+           +YS+G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHDLQHAVINVDDEYGAELVGRLKKDCPDLVVYSYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++G +         + D LP   +    E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTGDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAAASDIILIAGKG 464


>gi|167747178|ref|ZP_02419305.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|317473619|ref|ZP_07932908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
 gi|167654138|gb|EDR98267.1| hypothetical protein ANACAC_01892 [Anaerostipes caccae DSM 14662]
 gi|316898909|gb|EFV20934.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerostipes sp.
           3_2_56FAA]
          Length = 486

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 151/474 (31%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+  +   +       ++ +  DSR +     F  I G  +DGH FI   ++KG
Sbjct: 1   MKLSKLLERSEYTLVQGTEDTEISTLVYDSRKVEENSVFVCISGAAFDGHKFIGQVIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A ++VV  D+ A      + V   DD   AL +++ A       +   I ITG+ GKTT 
Sbjct: 61  AKVIVVQQDVEA---PKGVTVIRFDDTRKALAEMSAAYFGYPAEELMTIGITGTKGKTTI 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L    +    IG+    IG              V     R   D       + 
Sbjct: 118 TYMIQSVLEHAGQKTGLIGTIETVIGDERIPSVNTTPESYVIQESFRKMADAGCKNVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +            + T +A  H+      E       +                
Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNLAEDHIG-----ENEHKDMDDYIRCKSLLFQQCRQGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +       ++ +FG    +D      ++  E  ++ V    K  E  +  +
Sbjct: 233 VNGDDDYVERIIKGHTCSLETFGMKPGSDVYADHIERIQEPGYLGVSYDLKGKEEYNVHV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  +  +L  +S+           L   +  + +G+         +  +ID ++NA
Sbjct: 293 DIPGDFTVYNSLAAISLCRHMGIQKKDVLDALNTIQVKGRLEIIKTPGEYTLMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 +  S+L+ I  +   +   + G     G  +++   ++ EV S      V  S 
Sbjct: 353 -----MSLESLLTTIRKYDPKKIYCLFG---CGGNRAKARRYEMGEVSSKLADLTVVTSD 404

Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +       GD+V++  K 
Sbjct: 405 NPRNEEPMDIINDILVGVHKGPGEYVTIPDRKEAIRYCMEHAGKGDIVILAGKG 458


>gi|89067945|ref|ZP_01155389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
 gi|89046543|gb|EAR52599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanicola granulosus HTCC2516]
          Length = 498

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 149/459 (32%), Gaps = 33/459 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +     +  + G+++DSR + P   F A+ G    G  FI  A+ + AG ++ + +  
Sbjct: 17  GLTAQGGREAEITGLTVDSREVMPGHLFAALPGSQVHGAAFIGAALAQQAGAILTDAEGA 76

Query: 76  ----ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +    + +   +D    L + A     R   T++A+TG+ GKT+          
Sbjct: 77  RLARDELAEADVALVIAEDPRQTLAQTAALWFGRHPGTVVAVTGTNGKTSVSAFTRQIWY 136

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFL 178
            + +    +G+          L     D              G+    +  S  G  +  
Sbjct: 137 ELGEPAVNLGTTGVEGAWSHPLRHTTPDPITLHRVLAEAARQGVTHVAMEASSHGLDQRR 196

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +       T     HL      E    AK  +F  +     + +   D     L A+
Sbjct: 197 LDGMVLSAGGFTNFTQDHLDYHKSFEAYFDAKMALFTRVLADDGVAVVNLDDPKGPLVAQ 256

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 + +   G+   A  +L   +  +    +  + QG+S     + IG   A+N+L+
Sbjct: 257 IAEERGQEVIGVGRHPEARLRLLGQRFDATGQELRFEWQGRSKLARLNLIGGFQAENVLL 316

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+     +D      AL       GR +      N      +D ++  +  +      
Sbjct: 317 AAGLAIGSGSDPAEVFAALGHLQTVRGRMQLAATRDNGA-TVFVDYAHTPDAVAT----- 370

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            +  + PH  GR +A++G     G         L    +  +   V ++  +  +     
Sbjct: 371 AVEALRPHVIGRIVAIVGA----GGDRDRTKRPLMGQAAAEHADRVIVTDDNPRSEDPAT 426

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              + L  +             L     L  GD +++  
Sbjct: 427 IRAEVLAGAPGATEVGDRAEAILRGADMLEPGDALLICG 465


>gi|330957975|gb|EGH58235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 487

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/461 (16%), Positives = 152/461 (32%), Gaps = 45/461 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +  + + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGINSDGRAHIADALKRGAAAVAYEVEGSSVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL  + +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNMVGVTGTNGKTSVTQLVAQALDLLGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFHGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATAIA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AV+T ++  HL     +E    A AK   +  L        +        LK +S  
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINLDDEFGRKLATLKHESRL 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +    + S       D +        +     +        +    +G     N+L  +G
Sbjct: 251 ITYSQLDSAAYLYCRDARFDD-----DGVRATLVTPQGEHFLRSALLGRFNLSNVLAAVG 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L   +D  +K L       GR +R   A           + +A          VL 
Sbjct: 306 ALLGLDYALDEILKVLPKLEGPVGRMQRLGGASKPLVVVDYAHTPDA-------LEKVLE 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            + PH +GR + + G     G         L   +       VW++  +           
Sbjct: 359 ALRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRNEPPSQIFD 414

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++     +  V + E        + +S    DVVV+  K 
Sbjct: 415 DIRPGFVAADKVRFVEGRGQAIAELIASASADDVVVLAGKG 455


>gi|209696057|ref|YP_002263987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
 gi|208010010|emb|CAQ80333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Aliivibrio salmonicida LFI1238]
          Length = 493

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 166/480 (34%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL         +     ++ +++DSR +     F AIKG   DG  FI  A+++
Sbjct: 1   MMQLSELL----LPWCELNQVVEISSMTLDSRKVTTGCLFVAIKGHAVDGRQFIPVAIKQ 56

Query: 64  GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           GA  V+  +D V   G++S     P+  +D +   L+ +A       + K  ++ ITG+ 
Sbjct: 57  GASAVLAQSDEVNKTGTISFLDQTPIIYLDALSIKLSAVAGRFYHAEQRKMQLVGITGTN 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYN-----------NHIGVPLTLARMPVDVDFGIFE 166
           GKTT  +++    + + K    +G+             N  G P+ + +   D++    +
Sbjct: 117 GKTTISQIIAQWATLLGKPAGVMGTTGNGLLTDLKPALNTTGSPIEIQQTLTDLENIGAK 176

Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           L     S  G ++   + +    AV T ++  HL     +   A AK  +F       +I
Sbjct: 177 LTALEISSHGLVQGRVNALNFDAAVFTNLSRDHLDYHGDMANYAEAKKLLFTSHSPKYSI 236

Query: 224 FLNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               D      LK   +A+G+     +                 ++   + +     + +
Sbjct: 237 INADDTVGASWLKELPNAVGVSLNEGNLSFHSGKKVFATSVIYSTDGIQISLNSDWGTAD 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+L+    +  L  D+     A        GR + +    N       
Sbjct: 297 LSVPLIGAFNANNILVAFATLLSLGYDITELADAAPKLTAVIGRMELFSSEGNAKVVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A   ++         +  H EG+   + G     G    +    +   ++     
Sbjct: 357 AHTPDALDKAL-------QALRVHCEGKLWCIFG----CGGDRDTGKRPMMASIAEQQAD 405

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + LS  +            +   L +    H          F  S     D++++  K 
Sbjct: 406 VIILSDDNPRSEDPSLITKDMLAGLNQPDIAHVIHQRFDACQFALSQASKHDIILLAGKG 465


>gi|226941974|ref|YP_002797048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Laribacter hongkongensis HLHK9]
 gi|226716901|gb|ACO76039.1| MurE [Laribacter hongkongensis HLHK9]
          Length = 491

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 157/450 (34%), Gaps = 40/450 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVF 86
           + ++ DSR + P + F A +G + DG ++I  A+ +GA  V  +  D        ++P  
Sbjct: 24  DRVTSDSRRVLPGDLFLAFRGEYADGRNYIADAISRGAVAVAWDPADGFEWQPGWTVPNL 83

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI---- 140
            V D+      +A     R     T+I +TG+ GKT+    L  A + + +  A I    
Sbjct: 84  PVPDLRARAGVVASFLLGRPSEALTVIGVTGTNGKTSITTWLAQAFTLLGQKAALIGTVG 143

Query: 141 -------GSYNNHIGVPLTLARMPVDVDF---GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +    P+T+ R   D       +  + +S  G  +F  + V    AV T
Sbjct: 144 NGFFGALSDATHTTPDPVTVQRTLADFRRQGAHVVAMEVSSHGLDQFRVNGVTFGTAVFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +    + K  +    +      +N DD F   L ++  A  + T    
Sbjct: 204 NLTRDHLDYHGSMAAYGATKERL-FHWQGLQHAVINVDDQFGRELASRCTAGQVITYG-- 260

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              ++ D +        E   ME+        +    +G   A N+L  L ++ +    +
Sbjct: 261 --LEHGDVRPMAVHASLEGLAMELATPWGHGRIESAFLGRFNASNLLACLAVLCVNGVPL 318

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A  V    +    R +         ++ + Y   P +++ A+S L+ I P   GR
Sbjct: 319 TQ---ACRVLGQIQPARGRMQRVGGTREPLVVID-YAHTPDALEKALSTLADIKP-AGGR 373

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIH-- 423
             AV G     G         L   ++        ++  +        + D +   +   
Sbjct: 374 LFAVFG----CGGDRDRGKRPLMGDIAERFADVTVVTSDNPRTESPQVIIDDILAGMRQP 429

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +  +    GDVV+V  K 
Sbjct: 430 TQVEPDRRAAIHWAVAQARVGDVVLVAGKG 459


>gi|110833454|ref|YP_692313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
 gi|123050682|sp|Q0VS07|MURE_ALCBS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110646565|emb|CAL16041.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Alcanivorax borkumensis SK2]
          Length = 490

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 152/475 (32%), Gaps = 43/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL               ++G+ +DSR + P +AF A++G   DG  F+  A+  
Sbjct: 1   MMTLQQLLPNT--TLPATAAGVVLSGLQLDSRKVMPGDAFLAVQGVASDGRQFVSQAIAA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+   +  +     ++P      +  ++ +LA            ++ +TG+ GKT+
Sbjct: 59  GAVAVLAEAETFSVQQEQAVPRVNFPGLSRSVGELAARWYGEPGSAMNVVGVTGTNGKTS 118

Query: 122 TKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDVDFGIFELGM----- 169
               L  AL+++    A +              G               + E G      
Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKDNEQITGHTTPDPITLQAGLARVLEAGADTVAM 178

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +         +AV + ++  HL     +E   +AK+ +F        +    
Sbjct: 179 EVSSHALDQHRLGPTPVSVAVFSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKLAVINCD 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D   + L+             +FG    A  +       +E +  E+ + G+S  V    
Sbjct: 239 DPVAYSLV---GCLADGVRCVTFGDQTGATVRCASVAFTAEGTNAELNVGGESFSVTLPL 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N++   GI+       D+   AL+   P  GR +  + A           + +
Sbjct: 296 FGRFNLSNLMAVAGILHGQGVSTDSLAGALAAITPVPGRMEPVQQAGCPTVIVDYAHTPD 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                       L     H  GR   ++G     G    +        ++     HV  +
Sbjct: 356 G-------LEKALQACRAHFAGRLFCIIG----CGGDRDTGKRPQMAAVAERGADHVVFT 404

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L  +  V      D   +    +  DGDV+++  K 
Sbjct: 405 SDNPRSEDPQKIIDEMCAGLTDTGSVQIIVERDRAVMDTVQAASDGDVILLAGKG 459


>gi|328957888|ref|YP_004375274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328674212|gb|AEB30258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 513

 Score =  134 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 94/453 (20%), Positives = 162/453 (35%), Gaps = 39/453 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V GI+ +S  I P   F AIKG   DGH +I  A+  GA L++   +++    +L
Sbjct: 45  DQSLEVKGITDNSNEIKPGYVFIAIKGYKKDGHIYIQQAIINGAILIIGENELM----NL 100

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P   V     AL ++A            +I ITG+ GKTT    +   L     + + 
Sbjct: 101 EVPYLKVKSARKALGQVAKLFYKDPSKDKIMIGITGTNGKTTISFFIKHLLEKQGYSVSS 160

Query: 140 IGSYNNHIG-----------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           IG+ +N I               T+ ++ V     +  + +S  G  +     ++   A+
Sbjct: 161 IGTIHNEINGKKIKTINTTPNAKTINQLLVASTDQVVVMEVSSQGLEQDRLEGIQFDYAL 220

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              +   HL   + +EE    KA +F+ L+  GT  +N DDS+   L     A G   I 
Sbjct: 221 FNNLQHDHLDYHNTMEEYFECKALLFQKLKPNGTAIINSDDSWGLKLIEHLTAEGK-KIL 279

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+   ++ Q+   +       + V  +     +     G H   N+ M+   V  L  
Sbjct: 280 TVGEQSFSNVQILSKELND----VSVMHKNMEYSLRTPLPGMHNLYNLSMSSCAVHELGV 335

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     +S F    GR + +    N         + +A   ++  AI+        G 
Sbjct: 336 PYEKVKPYMSDFTGISGRFELFHLENNVTVVVDYAHTPDALEIAINTAINN-------GA 388

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKD---ALPRSIHV 424
              I V G         +   +++   LS  +I  V  L G  +  L      + +   V
Sbjct: 389 NHIITVFGFAGNRDTSKRKAMLEIVTRLSDSSILTVTELFGSTIDKLYTDYVMIQKECQV 448

Query: 425 H----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                  GD V++  K 
Sbjct: 449 EDSTSIIMDRTLAIQKAIKDAQPGDWVLLLGKG 481


>gi|266625297|ref|ZP_06118232.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
 gi|288862800|gb|EFC95098.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Clostridium
           hathewayi DSM 13479]
          Length = 111

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++L+A  G  +   P   ++ +SIDSR++   + F  + G   D H FI  A   GA
Sbjct: 5   TVKEILEATGGRLLCGSPDTPLDHVSIDSRTMKGNDLFVPLVGEKVDAHRFIGQAFDNGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
                +      +   + P   V D   AL  L    R R K  ++ ITG
Sbjct: 65  AATFTSE---HDVMEDNRPWIRVSDTKRALQALGAWYRRRLKLPLVGITG 111


>gi|300726286|ref|ZP_07059739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
 gi|299776483|gb|EFI73040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Prevotella bryantii B14]
          Length = 487

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 92/476 (19%), Positives = 159/476 (33%), Gaps = 48/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I+   I    +  V G++IDSR I     F A+KG   DGH +I  A++ G
Sbjct: 1   MKLQELLYDIKPIQIIGDVEKEVTGVNIDSRKIEKGHLFIAMKGTQTDGHAYIAKAIELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++    +    +  I    V+    ++ K+A A          ++ +TG+ GKTT 
Sbjct: 61  ATAILLED--MPQQYTEGITYIQVESTEDSVGKVATAFYGNPSHHLILVGVTGTNGKTTI 118

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELG 168
             +L      +       + + +Y     VP                  V        + 
Sbjct: 119 ATLLYNMFRRMGHKCGLLSTVCNYIEDKAVPADHTTPDPIELNALLSEMVKAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     ++   A+ T +   HL      E   +AK   F+GL K      N D
Sbjct: 179 CSSHAIHQKRIGGLKFAGALFTNLTRDHLDYHKTFENYRNAKKAFFDGLSKDAFAITNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A    T+ ++     ADF  +  +   +     ++L+    EV    I
Sbjct: 239 DKNGMIMVQNTKA----TVKTYSIRTLADFSAKILECHFDG----MELEVNGKEVNVQFI 290

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L   G   +L  D +  + ALS  H   GR + +              + +A
Sbjct: 291 GKFNVSNLLAVYGAAVMLGKDPEDVLVALSALHSVNGRLQPFHSPNGYTAIVDYAHTPDA 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               + A   VL     +G+G  I V G     G         L    ++     V ++ 
Sbjct: 351 LENVLNAIHEVL-----NGKGHVITVCGA----GGNRDKGKRPLMAQEAVKQSDKVIITS 401

Query: 409 FHVL---------ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   L       V                   GDV+++  K 
Sbjct: 402 DNPRFEEPQDIINDMLAGLDNKQMKKVISIVDRKEGIRTACMLAQKGDVILIAGKG 457


>gi|313886000|ref|ZP_07819738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924530|gb|EFR35301.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica PR426713P-I]
          Length = 499

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 168/458 (36%), Gaps = 47/458 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            Q  V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+    
Sbjct: 30  EQCPVTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSDE- 88

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    V D   A+  LA     R   + TI+ +TG+ GKTTT  +     + +    A  
Sbjct: 89  VAWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALF 148

Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            +    IG                  + R  VD       + +S    ++   + +   +
Sbjct: 149 STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFAL 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     ++   +AK  +F+ L       +N DD    ++     A     
Sbjct: 209 ALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLSPDAYALVNADDRNGSVMVQNCAA----H 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++++    +AD+  +   Q  + S + +  +    EV    +G + A N+    G+  +L
Sbjct: 265 LHTYAMRSHADYMAQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLL 320

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+D ++    +   +   G+    A  +G+  ++D ++  +        ++L  +S  
Sbjct: 321 LPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSEL 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
              +   V+G     G             ++     H++L+  +  +         + + 
Sbjct: 376 NASQVYVVVGA----GGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEG 431

Query: 418 LPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451
           +P++                   ++   GD+VV+  K 
Sbjct: 432 IPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469


>gi|296120949|ref|YP_003628727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
 gi|296013289|gb|ADG66528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Planctomyces limnophilus
           DSM 3776]
          Length = 551

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 82/458 (17%), Positives = 152/458 (33%), Gaps = 44/458 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                + N +++DSR   P+  F A  G +  G  F+  A+ +GA  VV +      + +
Sbjct: 24  GAGDIYFNDVTLDSRECRPKTLFVAAPGRNSHGSQFLEEAISRGAVGVVTSQ----VLPN 79

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +P   V +   A   L+ +       +  ++ +TG+ GKTT   M    ++       
Sbjct: 80  CPLPQCVVANPRAAYAYLSQSLYGHPASRLRMMGVTGTNGKTTVSWMTRALMAKSGYRTG 139

Query: 139 CIGSYNNHIG---------VPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRP 184
            +G+     G          P                     + +S     +     +  
Sbjct: 140 LLGTVEYFDGYRAEPSVLTTPDAKLMAFWQHRMVSRGTTHLAMELSSHSLDQSRAAALPL 199

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++T I   HL           AKA I + ++  GTI L+ +D     L +   A   
Sbjct: 200 DCAIVTNITHDHLDYHGDFASYREAKARILDLVKPGGTIALHINDPGAASLASLVPAE-- 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +  +G + +A+   +   +    +   VQ QG+ M++    +G H  +N L  L    
Sbjct: 258 CRLIRYGVNVDAELSAQILSESLSGTTFRVQYQGQVMQMKLRILGRHNIENALAALAAGL 317

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  +  +AL  F P  GR    RC   + F   +D ++  +  S       L  + 
Sbjct: 318 AWKVPFLSMAEALEEFRPVPGR--MERCTWGEPFDIFVDYAHTPDALS-----RALCSLR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR 420
               GR I V G     G    +    L    +      +  S      +   +   +  
Sbjct: 371 GLTRGRLICVFGA----GGDRDATKRPLLGRAASQADVAIVTSDNPRSENPEKIIQQICD 426

Query: 421 SIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
            +     E                  + GD++++  K 
Sbjct: 427 GVPAQQVEVVIEVDRKLAIQHAIEQALPGDMILIAGKG 464


>gi|117922180|ref|YP_871372.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
 gi|117614512|gb|ABK49966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. ANA-3]
          Length = 493

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 145/480 (30%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLELTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116
           GA  V+V+TD +   G +             +   ++ +A       +     I+ ITG+
Sbjct: 57  GATAVLVHTDKIDEQGKVIATEQGVQIYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            GKT+T ++    +              + +       G+        +       D   
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFADKGV 176

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V   +AV T +   HL     +E  A AK  +F        
Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAEAKQMLFRFDSLLHG 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      L   ++       +S        F  +  +   +     +      ++
Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEVAFYTKNAQFNDQGVQATLVWPEGEVD 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L  L  + +   D+      +    P  GR +R+  A N       
Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGMDMRALASKVPYLVPVAGRMERFTTADNITLVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L+ +  H  G    V G     G         L    +     
Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + ++  +            +   L                  + +    GDV+++  K 
Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKHVVAQAKPGDVILLAGKG 465


>gi|325128831|gb|EGC51690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis N1568]
          Length = 492

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVCRLKKDCPDLAVYSYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|218780976|ref|YP_002432294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762360|gb|ACL04826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 531

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 85/488 (17%), Positives = 147/488 (30%), Gaps = 67/488 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L+          P      I  +SR + PQ  F AIKG   DGH F+  AV+KGA  VV
Sbjct: 18  VLEITGAQ---GDPDVI--SIQYNSRLVKPQGLFTAIKGNAVDGHIFVQDAVKKGAAAVV 72

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
               + A    + + V  V D   AL  +A     R   K  +  ITG+ GKTT      
Sbjct: 73  TEEPVEA---PIGVAVIRVKDSRRALANMASEFFGRPTEKLKLAGITGTNGKTTVTYFAE 129

Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
             L +       +G+ ++                          +   V   I E+  SH
Sbjct: 130 AMLGAAGCKVGIVGTVSSRWPGHEKESSVTTPESLELQETLARMVDAGVTHAIIEV-SSH 188

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDS 230
                      +    V T I   HL     +E    AK  +F+  L  +         +
Sbjct: 189 ALTQSRPAFC-QFDAGVFTNITQDHLDYHKDMESYFQAKRILFDDLLAASTKENKTAVIN 247

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +   A         +   G ++ +  +    K  ++     ++     +      +G 
Sbjct: 248 LDDPQGAVLCREVKTPVLCTGLTEGSSIRSIDVKAGADGLKGVMETPAGELVFESPAVGR 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N++   G+       ++     L+      GR ++    L++  F     + +A  
Sbjct: 308 HNLYNLMSAAGVGLAFGLSLEEVEMGLNAAVNVPGRLEKVENGLDRHVFVDYAHTPDA-- 365

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
                  +VL  +    + + I V G     G              +  +   V ++   
Sbjct: 366 -----LENVLEALRRVSKAKIITVFG----CGGDRDKGKRPKMGAAAARHSDLVVVTSDN 416

Query: 408 --GFHVLALKDALPRSIHVH--------------------YSETMDGLFLFIQSSLVDGD 445
                  A+ D +   I                                L    S   GD
Sbjct: 417 PRSEDPEAIIDDILPGISGEGAQRLNASYCMMCSRKSAFMVEPDRRKAILTAIMSSGPGD 476

Query: 446 VVVV--KS 451
           +V++  K 
Sbjct: 477 LVLIAGKG 484


>gi|261823021|ref|YP_003261127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium wasabiae WPP163]
 gi|261607034|gb|ACX89520.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium wasabiae
           WPP163]
          Length = 495

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 136/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPELALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V   +   + G++     +PV  + ++   L+ LA     +    +  I  +     
Sbjct: 61  AAIVAEAEGETADGTVREMHGVPVIYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+              +                 
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWALFAEHRVGQMIIN 240

Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+            +    +  +       + +         E+ 
Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMANNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     NML+ L  +  L   +D  + A S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCLGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV++  K 
Sbjct: 410 VVTDDNPRSEEPQAIVTDILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLIAGKG 467


>gi|27262268|gb|AAN87415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Heliobacillus mobilis]
          Length = 528

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 88/462 (19%), Positives = 156/462 (33%), Gaps = 50/462 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  ++G++ DSR +AP   FF I G   DGH+F   AV+ GA ++VV          L 
Sbjct: 52  PKQEISGLAYDSRQVAPGFLFFCIPGQKTDGHNFAAQAVEGGAAVLVVER-----FVDLK 106

Query: 83  IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P   V       AL   A          +I +TG+ GKTTT  M+   L +   +   I
Sbjct: 107 VPQIRVTSTRESLALAAGAFYGHPSEHLLMIGVTGTNGKTTTTYMIEAVLKAKGYSVGVI 166

Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+  N +G               +   LA M  D    +  + +S     +     V   
Sbjct: 167 GTIGNQLGEKRWPAAHTTPESSDLQKLLAEMRDDGADAVV-MEVSSHSLDQHRVLGVNFD 225

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFE---GLEKTGTIFLNYDDSFFELLKAKSHAL 242
           IA  T +   HL     +E   +AK ++F      E    I      +  +        +
Sbjct: 226 IAAFTNLTQDHLDYHHTLENYRAAKGKLFRELGQKESKKGIVKRAVINADDPSADYFLQV 285

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 ++G  ++A  + + W    + +   VQ  G ++++     G     N L    +
Sbjct: 286 SSVPAVTYGVEEDAAIRAKDWDVTPQGARCTVQYPGGTVDMTLQLTGRFNISNSLAAFTV 345

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I+  + +  ++AL       GR +                + +         ++VL+ 
Sbjct: 346 GWIVGMEPEQIVEALQSLRGVPGRFESVDQGQPFSVIVDYAHTPDG-------LVNVLNT 398

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LALKD 416
                EG+ + V G     G         +   +         ++  +         ++D
Sbjct: 399 AEALAEGKIVTVFG----CGGDRDRTKRPIMGAVVAEMSDIAVVTSDNPRTENPHRIIED 454

Query: 417 ALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            LP       I                S    GD+V++  K 
Sbjct: 455 ILPGVQAVPGIEYKVEPDRKKAIALALSMANPGDLVMIAGKG 496


>gi|309775547|ref|ZP_07670547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916641|gb|EFP62381.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 486

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 153/460 (33%), Gaps = 40/460 (8%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                 P   + G+ IDSR     + +F ++G  +DGH+FI   + KGA  +V +  +  
Sbjct: 5   QIFENAPDIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIEDVIAKGAKCIVHSKPV-- 62

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
                 I    V++V   LN++A            +  +TG+ GK+T   ++    S   
Sbjct: 63  EHMKKGIAYIQVENVNRTLNRVASLFYGHPSRNMKVFGVTGTNGKSTITSIIKDVYSHFA 122

Query: 135 KTYA-------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                                      +     +  VD       L +S  G        
Sbjct: 123 PCGYIGTISISYGEVTLPPSLTTPDAILIHKTMKDMVDAGMQAVALEVSSHGLELGRVQS 182

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L   + A
Sbjct: 183 VDFDVAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKDGVAVLNADDAYVDQLADATDA 242

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + ++G   +A +Q    +     S   +   G+  EVV + +  +   N+L  + 
Sbjct: 243 ----RVVTYGIDHHASYQAENIRIEKTGSRFTLVHDGEHYEVVTNLVALYNIYNLLGAVA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            ++     +   +  L+     EGR +R                +   P  M+       
Sbjct: 299 AMAESGIPIAKQLPYLNEIRQIEGRMERIDEGQLFNVIVD----FAHTPDGMEKVFEYAK 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
            I+  G    IAV G          +    +   ++      + L+           + +
Sbjct: 355 DITEEGHS-IIAVFGSAG----KRDTKKRKVFGEIASRYCDSIILTEDDPRDEDPREIAN 409

Query: 417 ALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   I   +  + E           S    D V++  K 
Sbjct: 410 EIKSGISDTNNIFIEDRYAAIRQAIESANMKDTVLILGKG 449


>gi|269119022|ref|YP_003307199.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
 gi|268612900|gb|ACZ07268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sebaldella termitidis
           ATCC 33386]
          Length = 481

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 81/472 (17%), Positives = 160/472 (33%), Gaps = 48/472 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++ + ++   I       +  I  DSR I   + F A+ G   DGH++I  AV  GA +V
Sbjct: 3   EIFENVEYEVINKGKDFVIGDIHYDSRKIKENDVFCALIGAVTDGHNYIEKAVNSGAKMV 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML 126
           +     + ++    +    VD++   L  +A       + K  II ITG+ GKTT+  +L
Sbjct: 63  IAEKKDI-TVADKDVTYIFVDNLRKHLGVIASNFFGWPQKKLKIIGITGTNGKTTSSYIL 121

Query: 127 TIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFELGMSHLGE 174
              L +  +         +               V +    +   V++ I E+  SH  E
Sbjct: 122 DSMLENTSRIGTIGYKILDEEIEAPNTTPESLDLVKMLDKSLKKGVEYFIMEV-SSHALE 180

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           I  +  ++     + T +   HL     +E   +AK ++F  L       +N DDS+ E 
Sbjct: 181 IGRV-DMLEFDSVMFTNLTQDHLDYHENMENYFNAKFKLFSMLRNKDAAAVNIDDSYGER 239

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +         K+  S+   K++D + +  +  +      V  QG         +G +   
Sbjct: 240 I-----YNSNKSYKSYSIIKDSDLKGKIEEYHNGGMKASVIFQGAEYFFDTKLVGDYNLY 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  +G++  L  D+   I+ +       GR +      +         + N       
Sbjct: 295 NLLGCIGVLLNLGFDIRDIIERVKRVGYVPGRFELVNEGQDFRVIVDYAHTDNG------ 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
              ++L  +    E R I + G     G    +         +      V ++       
Sbjct: 349 -LENILETVRKITEKRVITIFGA----GGDRDNTKRPKMARAAAKYSDFVIITSDNPRTE 403

Query: 410 HVLALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   + +                  +    +        D +++  K 
Sbjct: 404 DPAEITRQVEKGLTDIDFPKDKYTVIVDREQAIRYGIEMSDANDSLLIAGKG 455


>gi|227815000|ref|YP_002815009.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
 gi|227004988|gb|ACP14731.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CDC 684]
          Length = 246

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 92/230 (40%), Gaps = 7/230 (3%)

Query: 1   MNPLWTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFIL 58
           M  +       + I G           ++G+ IDS++I     F  I      DGH+++ 
Sbjct: 1   MIQM-NLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVK 57

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  GA   +      +      IP+  VDD L AL +LA   R      +I ITGS G
Sbjct: 58  EAMDNGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G     
Sbjct: 116 KTTAKDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIE 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        +   + + F     + S + E    ++          
Sbjct: 176 RFTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 225


>gi|157373546|ref|YP_001472146.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
 gi|157315920|gb|ABV35018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella sediminis
           HAW-EB3]
          Length = 493

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 160/476 (33%), Gaps = 46/476 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +             N +++DSR++ P + F AI G   DG  +I  AVQ+GA   +
Sbjct: 2   LLRDLLAPWFHYAGSESFNKLTLDSRAVGPGDLFIAIPGHQADGRKYIRSAVQQGAVASL 61

Query: 70  VNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           V+TD   S G              +   L+ LA  A   S  +  ++ +TG+ GKT+  +
Sbjct: 62  VHTDDPESHGKCVDDEGKQILFFQLNRQLSALAAQAYPLSAERLKLVGVTGTNGKTSITQ 121

Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMS 170
           ++   ++ + K++       N   G  +       D    +               + +S
Sbjct: 122 LMAQLVTLLGKQSAVMGTLGNGLWGDLVDSGNTTADAITMMAQLQEFDAQGAELCAMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G I+     V   +AV T ++  HL     ++    AK  +        +  +N DD 
Sbjct: 182 SHGLIQGRVEAVPFDVAVFTNLSRDHLDYHGTMQAYGDAKKRL-FNFPSLSSGLINLDDE 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADF----QLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +   A+       +    G+  + +       +      +    ++   G   ++   
Sbjct: 241 IGKQWLAEHDTGKYTSFSIHGEPASIENSKAIYTQNNHFHHQGVDAKLVWPGGHADLCSP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N++  LG + +L  D+ + +  +       GR +R+    +         + 
Sbjct: 301 LLGSFNLSNLIAALGALYLLGFDMHSLVAVVPKLQAVAGRMERFTTPDDVTIVVDYAHTP 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A           L  +  H +G    + G     G         L    +      V +
Sbjct: 361 DA-------IEQALKALRGHCDGELWCLFG----CGGDRDKGKRPLMAQAAEKYADRVVV 409

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            + + L            +     + ++   GD+V++  K 
Sbjct: 410 TSDNARSEQPDVIINDILEGLTAPDKALTQVDREVAIRQVVANAKAGDLVLLAGKG 465


>gi|86148535|ref|ZP_01066822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
 gi|85833681|gb|EAQ51852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. MED222]
          Length = 494

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/460 (16%), Positives = 149/460 (32%), Gaps = 42/460 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV----NTDMVA 76
            +    V  + +DSR+I   + F AI G   DG  FI  AV +GA  VV     +     
Sbjct: 21  ELDAIAVEQLELDSRAIKEGDIFVAIVGHAIDGRRFIDKAVAQGAKAVVAQASDDKAHGL 80

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131
                ++PV  V ++   L++LA          +I +TG+ GKTT  +++   L      
Sbjct: 81  VEWLNAVPVVYVSELNSILSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIF-ELGMSHLGEIRFLTHLV 182
                 +       + +  N  G  + + R   +   +  ++  + +S  G ++     +
Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAEESAVYTAMEISSHGLVQGRVKAL 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T ++  HL     +EE A AK  +F   +    +    D+     +   S+A+
Sbjct: 201 NFEVGVFTNLSRDHLDYHGTMEEYALAKKRLFTQHKCKHAVINVDDEVGKAWMADLSNAI 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  +                        +         ++    IG   A N+L+    
Sbjct: 261 AVSLLPLS--DYQQSVWASDVAYAETGIKLSFDGSWGQGDLSVPLIGQFNASNVLVAFAT 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D  T +   S   P  GR + ++             + +A           L+ 
Sbjct: 319 LLSLGIDKQTLVDTASQLQPVIGRMELFQVPSKAKVVVDYAHTPDA-------LEKALAA 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H  G+  A+ G     G    +    +  V +      + +S  +            
Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMAVTAEQFADKIIISDDNPRSEDPALIVKD 427

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L                 F        D++++  K 
Sbjct: 428 MLAGLSEPESAFVEHDRYQAVKFALEQAGSNDIILLAGKG 467


>gi|167751504|ref|ZP_02423631.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
 gi|167655312|gb|EDR99441.1| hypothetical protein EUBSIR_02505 [Eubacterium siraeum DSM 15702]
          Length = 484

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 149/464 (32%), Gaps = 60/464 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V G++ ++  +     F  +KG  +DGH      + KGA ++V + D+      
Sbjct: 17  GTQNAVVTGVTDNTAEVKQGSIFVCVKGARFDGHSAAAEMLSKGAVMIVTDHDIKCG--- 73

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYA 138
                   D+    L +L  +   +      ++A+TG+ GKTTT   +   L+++ K   
Sbjct: 74  ---KQLVTDNTRLCLARLLNSFYGKPSEKLGLLAVTGTNGKTTTAHFVKHILTTLGKKCG 130

Query: 139 CIGSYNNH----------IGVP----------LTLARMPVDVDFGIFELGMSHLGEIRFL 178
           C+G+  N            G P               +    D+ + E   S     ++ 
Sbjct: 131 CVGTAGNDTCSGELKPSQHGTPTVPRATVLYSWLGEMVSNGADYCVME--ASSQALDQYR 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               R  +A  T +   HL     +E    AK  +        T+      +  +    +
Sbjct: 189 IGDERIAVAGFTNLTRDHLDYHGTMENYFQAKRRV-------FTMCKTAVINIDDEYGKR 241

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--HMAQNM 296
                     ++    NAD+     +  +      +  + +             +  QN 
Sbjct: 242 LAQEFSDIAVTYSAEGNADYHAEFIRMNATGCSYMLVNEREKTACRVDMNMTGLYNVQNS 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +V+ L  D+    KALS     +GR       + +G FT+I +  + + A     
Sbjct: 302 LCAIAMVTALGFDMTECAKALSDLDGVDGRM----NVVYRGDFTVITDYAHTDDA----L 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------- 407
           I VLS + P  +GR I V G               +    +  N   + ++         
Sbjct: 354 IKVLSTLKPLTKGRLICVFGAAG----DRDKEKRPMMAKAAEDNADILVITSDNPAHENP 409

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +  +   +                 +   +    DV+ +  
Sbjct: 410 DEIIREVMTGISGKKPCRCITDRREAIAYALDTARKDDVIALCG 453


>gi|309789910|ref|ZP_07684487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
 gi|308228042|gb|EFO81693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Oscillochloris
           trichoides DG6]
          Length = 521

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 91/497 (18%), Positives = 151/497 (30%), Gaps = 64/497 (12%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  DLL  +   +IG        + G++ DSR + P   F AI+G H DGH ++ HA++ 
Sbjct: 4   TLRDLL--VGLETIGPPTDLDIPILGLAYDSRQVRPGWLFVAIRGFHVDGHQYVDHALKA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS----- 116
           GA  VVV+        +L +P+  V D   AL  LA             I ITG+     
Sbjct: 62  GAVAVVVDVRHWNGPTTLGVPLITVADSRVALAPLAANFYAHPAAHLRTIGITGTKGKST 121

Query: 117 ---------VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----LARMPVDVDFG 163
                     G      M++     I        +  +    P         +     + 
Sbjct: 122 TTDLVSQVLEGGGLRTGMISTVDFKIGARRWPNTTRQSTPEAPEIQGLLHEMLDAGCSYA 181

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA-------------SAK 210
           + E     L         V   +AV   +   HL      E+                ++
Sbjct: 182 VLESTSHALSPYWNRLGNVYFDVAVFLNVTHEHLDYHGSFEQYRADKARLFAMLGEGQSE 241

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A   +G      ++   +            A       +FG    AD +          S
Sbjct: 242 ASCHQGDRVERPVWAIANADDPNCQFFLDAAPSYARRLTFGVRAAADVRAHAVASGPSGS 301

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V        +     G     N L  L +       ++ AI AL       GR +  
Sbjct: 302 HLRVTTPWGEAALHLQIPGSFNVSNALAALSVALSQGVPLERAITALEAVPGIRGRMQPI 361

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L Q F  ++D ++N +         VLS + P  +GR IAV G   E          
Sbjct: 362 H--LGQPFDVIVDYAHNPDSFE-----QVLSMLRPLTKGRMIAVFGSAGE----RDRAKR 410

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-----VHYSETMDGLFLF 436
            +   ++      + L+               + +   R+                    
Sbjct: 411 SVQGEIAGRYADLLVLTDEDPRGEDPAAIIAEIVEGAERAGKRVGDGYRCIPNRSEAIHV 470

Query: 437 IQSSLVDGDVVVV--KS 451
             ++   GD+V++  K 
Sbjct: 471 AIAAAQPGDLVLLLGKG 487


>gi|330981222|gb|EGH79325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 487

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 81/460 (17%), Positives = 157/460 (34%), Gaps = 43/460 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G + DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDALIRELTLDSRNVRPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLILVGVTGTNGKTSVTQLVAQALDALGQRC 130

Query: 138 ---------ACIGSYNNHIGVPLTL------ARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                          +     P  +        +       +  + +S  G  +     +
Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAVA-MEVSSHGLDQGRAAAL 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +AV+T ++  HL     +E  A+AKA++           +N DD F   L A     
Sbjct: 190 AFDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWLDLKCRVINLDDDFGRELAAVKQES 248

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T        +A    R  K   +     +        +    +G     N+L  +G 
Sbjct: 249 RLITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGA 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L   +D  +KAL       GR +R   A           + +A          VL  
Sbjct: 307 LLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEA 359

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           + PH +GR + + G     G         L   +       VW++  +            
Sbjct: 360 LRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDD 415

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     +  V + E        + +S    DVVV+  K 
Sbjct: 416 IRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|228914793|ref|ZP_04078402.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845112|gb|EEM90154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 252

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I G           ++G+ IDS+++     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVCIDSKNMKEGNVFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +F I E+GMS  G         
Sbjct: 126 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEFLILEMGMSEKGCRIIERFTW 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231


>gi|99081858|ref|YP_614012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
 gi|99038138|gb|ABF64750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruegeria sp. TM1040]
          Length = 494

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 149/476 (31%), Gaps = 41/476 (8%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   P      L     G +        + G+++DSR +     F A+ G    G  F+ 
Sbjct: 1   MTQRPALKLSQL-----GLTARAGLDPQITGLAVDSREVGEGFVFAALPGTRVHGATFVE 55

Query: 59  HAVQKGAGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             + +GA  ++ +         +I +    +   +D   AL+  A          + A+T
Sbjct: 56  QVLDQGAVAILTDAKGAEIAGEAIAAAGAALVVAEDPRQALSGAAALWFGAQPPVMAAVT 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFG 163
           G+ GKT+    L +  + +      +G+          LA    +            + G
Sbjct: 116 GTNGKTSVSTFLRMIWTELGHKAVNLGTTGIEGAWSHPLAHTTPEPITLHRALAAAAEAG 175

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +    +  S  G  +     V+   A  T     HL      E   +AKA +F  +    
Sbjct: 176 VTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDHLDYHETFEAYFAAKAGLFRRVLSED 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +               A   + I + G+    D  L   +  +    +      +  
Sbjct: 236 GVAVINMTDPKGAEMRAIAAARGQEIITVGR-GLGDIALMGMRVDATGQDIRFTWHDRPF 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               + IG   A+N+L+  G+      D +     L       GR +      N      
Sbjct: 295 AKRLNLIGGFQAENVLVAAGLAIASGEDPEQVFDTLPHLSTVRGRMQLAATRDNGA-TVF 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +  +       +  + PH  GR +A++G     G    +    L    +  N 
Sbjct: 354 VDYAHTPDAVAT-----AIKALRPHVLGRLVAIVGA----GGDRDATKRPLMGAAAQDNA 404

Query: 402 SHVWLSG-----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V ++          A++ A +  +             L     L  GD +++  
Sbjct: 405 DAVIVTDDNPRSEDPAAIRAAVMGGAPDALNVGDRAEAILRGVDMLEAGDALLICG 460


>gi|253689958|ref|YP_003019148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756536|gb|ACT14612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 495

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 137/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V   +  A+ G++     +PV  + ++   L+ LA     +    +  I  +     
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+              +                 
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVDQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFADHRVGQMIIN 240

Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+            +    +  +       + +         E+ 
Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     NML+ L  +  L   +D  + A +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGAQLQPVCGRMEVFHAEGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV+V  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467


>gi|161870660|ref|YP_001599833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis 053442]
 gi|161596213|gb|ABX73873.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           053442]
          Length = 492

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 77/447 (17%), Positives = 146/447 (32%), Gaps = 39/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHY 426
           G     G         L    ++     V ++  +            +  A+P    V  
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPERVE- 438

Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +        D++++  K 
Sbjct: 439 -ADRAAAIRYAVERAAANDIILIAGKG 464


>gi|325142969|gb|EGC65326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis 961-5945]
 gi|325198903|gb|ADY94359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis G2136]
          Length = 492

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEISSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|297566848|ref|YP_003685820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
 gi|296851297|gb|ADH64312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus silvanus DSM
           9946]
          Length = 474

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 85/464 (18%), Positives = 147/464 (31%), Gaps = 63/464 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKG---PHY---DGHDFILHAVQKGAGLVVVNTDMVA 76
           P   V GI+ DSR + P   F AI+G    +    +GHDFI  A+ +GA  +V   D+  
Sbjct: 13  PTTPVTGITHDSRLVQPGFIFVAIEGLPLANRPPLNGHDFIPEAIARGAVGIVGTQDL-- 70

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
               L +P   V D   AL  LA A          ++ ITG+ GKTT   +    L    
Sbjct: 71  ---ELPVPYLKVADPRSALADLAAAFWGHPAKMLQLVGITGTKGKTTVTVLAHHLLQFAA 127

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG--IFELGM--------------SHLGEIRFL 178
                I +    +G                 + E+                S        
Sbjct: 128 PPAGRISTVGVRVGEEEYFLSGHFTTPEAPQVQEMLARFVKAGCKQAVLEVSSHALALER 187

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   + V T ++  HL     +E   +AK  +            +        L   
Sbjct: 188 VRGLEYEVGVWTNLSEDHLDFHGSMENYFAAKQTLLRRSRFGVLNREDPYYPQLPGL--- 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                  T +S+G     D+Q     + +      V+    + +V    IG   A N L 
Sbjct: 245 -------THWSYG--MGGDWQAENLLETAGGLHFRVRSPLGAFKVSLPMIGKFNALNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +   + L   +      L  F    GR +  +       F +I +  +   +      +
Sbjct: 296 AMAAAARLGVKIPELQAGLEFFPGVPGRMQIVQ----ATPFRVIVDFAHTESS----VRA 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  + P   GR + V+G   E G   ++    +           V+    H     +A+
Sbjct: 348 ALETLRPTTRGRLVIVVGAAGERGAERRTG---IGRAAGELADLAVFTEEDHRSENLEAI 404

Query: 419 -------PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +++   Y+          +  +    GD +++  K 
Sbjct: 405 LQTMAESAKAVGGQYALIPDRREAIRWAIAHAQPGDTLLLAGKG 448


>gi|302185274|ref|ZP_07261947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae 642]
          Length = 487

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSIVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL  + +  
Sbjct: 71  ITDVPLIPVKGLAAQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L A      
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSDLKCRVINLDDDFGRELAAIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +KAL       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKALPKLEGPVGRMQRLGGAEKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        V + E        + +     DVVV+  K 
Sbjct: 417 RPGFVAVDKVRFVEGRGQAIAELIAGANADDVVVLAGKG 455


>gi|33151486|ref|NP_872839.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
 gi|46576953|sp|Q7VP59|MURE_HAEDU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33147706|gb|AAP95228.1| UDP-N-acetylmuramyl-tripeptide synthetase [Haemophilus ducreyi
           35000HP]
          Length = 501

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/462 (14%), Positives = 144/462 (31%), Gaps = 52/462 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-------- 82
           ++DSR +   + F A+KG   DG  FI +A+++GA +++   +       L         
Sbjct: 25  TLDSRQVTEGDLFIALKGHQCDGRQFIQNAIEQGAAIILAEAESDQDEIELDSQFARYNL 84

Query: 83  ----IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V  +   L+ +A +       K  +I ITG+ GKTTT ++L          
Sbjct: 85  DRRACKVITVPRLAERLSAIADSFYASPSAKLKLIGITGTNGKTTTAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+              I                  + +S  G  ++   
Sbjct: 143 GHSAVMGTIGNGLYGQEQEAINTTGSAIEVQQNLARFVEQGADFCAMEVSSHGLAQYRVE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A+ T ++  HL     I     A         +T    LN DD   +   +   
Sbjct: 203 ALQYDLAIFTNLSRDHLDYHHSI-AAYEAAKFRLFNALQTKAQVLNADDQVAQNWLSMLP 261

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +      S++   +  K     + +++E +    + +      G     N+L+ L
Sbjct: 262 NAVLVSCDPNFTSEHQFVKATKVNFSLQGAYIEFESSWGNGQFHSQLSGAFNVTNILLAL 321

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L  D+   +   S      GR ++     ++    ++ +  +   A        L
Sbjct: 322 AGLLTLGYDLAKLVATASQLRSVTGRMQKVSAITDKNRPLVLVDYAHTPDA----LQKAL 377

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
                H +G+   V G     G         L   ++      V ++  +          
Sbjct: 378 QAARLHTKGKLFCVFG----CGGDRDCGKRPLMATIAEELADGVIVTNDNPRTEDQHKIV 433

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +     +  ++      +             D++++  K 
Sbjct: 434 AEIMQGFAKPDNILVIYDREQAIQHAIKHASSADLILIAGKG 475


>gi|220931747|ref|YP_002508655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
 gi|219993057|gb|ACL69660.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothermothrix orenii H
           168]
          Length = 499

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 158/478 (33%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L++ I            ++ I  DSR +     F  I+G + DGH +I  A++KG
Sbjct: 1   MKISELIKDITPVETRGDLDKEIDNIVYDSRQVTDNSLFICIEGFNTDGHKYIDKAIKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV+  D+   + S  I    V+D    +  LA           ++I +TG+ GKTTT
Sbjct: 61  AVAVVIEKDL--EVYSEDITYIRVNDSRETMGYLASTFYNYPLKNLSLIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFE 166
             ++   L         +G+  N IG                       +   V   + E
Sbjct: 119 TYLIKAILEEAGFNTGLVGTIKNIIGDETLPATRTTPESLDLYRLFARMVDSGVTHAVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH  +++ +  +    I V T I+  HL     ++E   AK+ +F  LE  G   +N
Sbjct: 179 V-SSHALDLKRVEGM-EFKIGVFTNISQDHLDYHKSLDEYLKAKSRLFRQLEPGGWAVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DDS  + +           I ++G   + D +  +           V  + +S ++  +
Sbjct: 237 IDDSHSDKIIK----STTGNIITYGIEGDCDLKANEINLSPTGVSYHVSGK-ESFKIDLN 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +    +L  + +T    +       GR +      +         + 
Sbjct: 292 LTGLFNVYNSLAAISCGHVLGINGETIKAGIEKVQGVAGRFELVNEGQDFAVVVDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL       +G  I V G     G         L   ++     +  +
Sbjct: 352 DG-------MENVLETAREFVKGNIIVVFG----CGGDRDKGKRPLMGKIATQLGDYCII 400

Query: 407 SGFHVL-----ALKDALPRSIHVHYS--------ETMDGLFLFIQSSLVDGDVVVVKS 451
           +  +        +   + + I                        +S    D+V++  
Sbjct: 401 TSDNPRSEDPMEIIKDIEKGIQEEVISDTPYVKEPDRRKAIFSAINSARKDDMVIIFG 458


>gi|256847057|ref|ZP_05552503.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715721|gb|EEU30696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 488

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 156/474 (32%), Gaps = 47/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL+QA++   +         V  ++ D+R + P   F AI G + DGH FI  A+ KG
Sbjct: 3   ASDLIQALKYKRLSQSEFTDFKVTTVTQDTRQVVPGAVFIAIVGANVDGHQFIPQAIAKG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A +++    +       ++PV  V D   A+  LA            +I +TG+ GKTT 
Sbjct: 63  AQMIIAQEPV-----ETTVPVVYVKDTHRAMAFLADKFYGSPSQSMKMIGVTGTNGKTTV 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             ++      + +    IG+    +                         D +     + 
Sbjct: 118 THLIEEVFHDLGEGTGLIGTLYRKVNDQVYPTTNTTPDVLTNQKTLAEMRDANVKTVSME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +  ++     +   I V T     HL+    + +   AK+ +F  +  T +      
Sbjct: 178 VSSIALVQGRVWGINYDICVFTNFTEDHLAYHKTMSQYKLAKSLLFAQMGNTFSG-KTAV 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + +  +        I ++G    AD      K     +  ++ +  +   V  H I
Sbjct: 237 MNIDDPVGREFIDYTTSNILTYGIKHQADIYADHIKITIHGTEFDLHVFDEVKHVKTHLI 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +G      A V   + +LS     +GR +                + + 
Sbjct: 297 GEFNVYNSLAAVGAAYAAGASVAEIVDSLSRVKGVKGRFQLVPSNTGVSVIVDYAHTPDG 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                   ++VL  ++   E     ++G     G    +        +++ N +H  L+ 
Sbjct: 357 -------LLNVLETLNDFAEQDTYCIVG----CGGDRDAQKRPQMAKIAVDNSTHAILTE 405

Query: 409 FH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +  +   +                 +  +    GD +++  K 
Sbjct: 406 DNPRTEDPHKIMDDMLAGIDSDQATVIF-NRREAIQYAVNRAKPGDAIIIAGKG 458


>gi|158426167|ref|YP_001527459.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
 gi|158333056|dbj|BAF90541.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azorhizobium caulinodans
           ORS 571]
          Length = 489

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 156/474 (32%), Gaps = 51/474 (10%)

Query: 6   TFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  DLL  I GH+ +       +  I+ DSR + P   F A+ G   DG  FI  A+ KG
Sbjct: 10  TMADLLALIAGHARLERGGSVPIAAITSDSRKVGPGTLFVAVPGTKADGARFIPDALAKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V++      +   + +P+    DV  +L   A     R   TI+A+TG+ GKT+  E
Sbjct: 70  AAAVLME--PTGAPPDMDVPLVFSLDVRRSLALAAARLHPRQPQTIVAVTGTAGKTSVAE 127

Query: 125 MLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDV-----DFGIFEL--GMS 170
            +    + +    A +          +++ G+                  GI  +    S
Sbjct: 128 FVRQIWAHLGIPAAYMGTLGLIAPGESSYGGLTSPDPVDLHATLDRLAGAGITHMALEAS 187

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   HL     +E    AK  +        T  +     
Sbjct: 188 SHGLDQRRLEGVRLAAGGFTNLGRDHLDYHPTVEAYFHAKLRL-------FTELMPDGAP 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI 288
               L A   A  +    + G    A       K      +   +        E++   +
Sbjct: 241 AIAALDAPYGATTLAFARTRGLPTFAIGATGDLKVTEVVAEGTSQRIRFADRPEILLPLV 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N L+   +V+     +D A+ AL       GR +  R   +      +D ++  
Sbjct: 301 GRFQADNALLAASLVAAGGVPLDDALSALPHLKGVPGRLE--RIGHDPARPVFVDYAHKP 358

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     VL  +     GR IA+ G     G         L   ++      V ++ 
Sbjct: 359 EALET-----VLDTLRAATAGRLIALFG----CGGDRDRGKRPLMGAIAAAKADVVIVTD 409

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +  A P ++ +      +       + +  GDV++V  K 
Sbjct: 410 DNPRSEDPSAIRAEILAAAPGALEIGA---REEAIRAGVAMMGAGDVLLVAGKG 460


>gi|289423120|ref|ZP_06424935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
 gi|289156451|gb|EFD05101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus anaerobius 653-L]
          Length = 497

 Score =  133 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 144/472 (30%), Gaps = 44/472 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+           +    ++ I  DSR       F AIKG   DGHD+I  A  KG+ 
Sbjct: 7   LKDIEYISNIK-ESQLEDIEISDIVYDSRKAVKDSIFVAIKGETVDGHDYIKGAYDKGSR 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           + ++N D+     ++      V D    L++++         K  ++ ITG+ GKTT   
Sbjct: 66  VFIINHDLEIEDDAIK---IIVPDSRRVLSRMSAIFFSEPTKKLKVVGITGTKGKTTISN 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMS 170
            +   L+        IG+                          +  +D       + +S
Sbjct: 123 YIKTVLTKSGMNTGVIGTNGVFYNDVAEKTLNTTPESYELQKTIKEMLDAGVECVAMEVS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             G +      +   I V T ++P H+        E     K+ +F   +       + +
Sbjct: 183 SSGLMMGRVDDIDFDIGVYTNLSPDHIGPKEHPTFEHYRECKSRLFGLCKYGIINVDDEN 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +                 S  K+ N +          +  +        ++       
Sbjct: 243 AQYMVDHAKCPTCGFSIDKESNIKAGNIELTRSSASLGVD--FDYKLKDQDTVRTHICSP 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  +G+      D D  ++ALS          R          T+I +  + 
Sbjct: 301 GEFSIYNALAVIGVCDHFGIDRDKMLEALSDAK----VDGRVEVIPVLDNATVILDYAHN 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
             +      +VL  +  +   R I V G +   G  +     +L +V +      +  + 
Sbjct: 357 GLS----LENVLDTLLKYDHNRMICVYGSI---GGRAAIRRKELGDVAARLCDVSIITTD 409

Query: 408 ---GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  + + D +  S       VH                 DGD+V+V  
Sbjct: 410 NPDDEDPMKIIDEIAESYVGSDSEVHKVVDRAEAIYKALEMAEDGDMVLVTG 461


>gi|313667809|ref|YP_004048093.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           ST-640]
 gi|313005271|emb|CBN86704.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria lactamica
           020-06]
          Length = 492

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIRDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLSACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP   +    E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464


>gi|216264034|ref|ZP_03436028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
 gi|215980078|gb|EEC20900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           afzelii ACA-1]
          Length = 505

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 156/481 (32%), Gaps = 57/481 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + DM     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVHSRDM--DFYSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +   V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   ++      K+     KS  ADF +    +  + +  E   +G      
Sbjct: 244 GFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFINEKIDSTRFEFYYKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLVCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   +S      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            L             +  +   +   +    + +            S    GD+VVV  K
Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVVLGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|110680539|ref|YP_683546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
 gi|109456655|gb|ABG32860.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Roseobacter denitrificans OCh 114]
          Length = 493

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 148/453 (32%), Gaps = 36/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
           Q  + G+++DSR +     F A+ G    G +FI +A++ GA  ++ +          +G
Sbjct: 20  QATLTGLAVDSREVRDGYLFAALPGSRIHGAEFIQYALRMGASAILTDAAGAQLAATELG 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--- 136
           +    +   DD   AL + A         T++A+TG+ GKT+    +    + +      
Sbjct: 80  ASEAALVISDDPREALARTAALWFGGQPKTMVAVTGTNGKTSVATFVRQIWTLLGHEAIN 139

Query: 137 --------YACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHI 186
                          +           +      G+    +  S  G  +     V    
Sbjct: 140 LGTTGVEGAWSAPLAHTTPEPITLHRALAEAARQGVTHAAMEASSHGLDQRRLDGVTLAA 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T     HL   +  E+  +AKA +F  +       +   D+   +  A         
Sbjct: 200 AGFTNFTQDHLDYHATFEDYFAAKAGLFARVLPEDATAVINIDADRGVDMAAIAEARNCP 259

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G+  + D  L   +  S    +     G         IG   A+N+++   +V   
Sbjct: 260 VITVGR-DSGDLHLGNIQVDSTGQVVCFMHHGTQYVRRLGLIGSFQAENVMLAAALVIAC 318

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D       L       GR +      N      +D ++  +  +       L  + PH
Sbjct: 319 GEDPQHVFDTLEHLSTVRGRMQLAGTRDNGA-TVFVDYAHTPDAIAT-----ALKALRPH 372

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA-LPR 420
             GR IA++G     G    +    L    +  N   V+++          +++ A L  
Sbjct: 373 VVGRLIAIVGA----GGDRDATKRPLMGQAAAENADVVFVTDDNPRSEDPASIRAAVLLG 428

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +             L    +L  GD +++  K 
Sbjct: 429 APDAIEVGDRAEAILRGVDALGPGDALLIAGKG 461


>gi|49185041|ref|YP_028293.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
 gi|254737215|ref|ZP_05194919.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254759045|ref|ZP_05211072.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Australia 94]
 gi|49178968|gb|AAT54344.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Sterne]
          Length = 243

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                  + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G         
Sbjct: 117 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222


>gi|294101813|ref|YP_003553671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
 gi|293616793|gb|ADE56947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Aminobacterium
           colombiense DSM 12261]
          Length = 500

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 135/447 (30%), Gaps = 46/447 (10%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S        F  I G  +DGH F   AVQ+GA +++    +      L +P   V++   
Sbjct: 37  SHQCEENSLFCCIPGEKHDGHSFASDAVQRGAAVLLCQHAL-----PLQVPQIIVENSRW 91

Query: 94  ALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--- 148
           A+   A A        +    ITG+ GKTT+  M+   L    +    +G+     G   
Sbjct: 92  AMGFAAAAVYGFPSKQVSLYGITGTNGKTTSSYMIRSILEEAGEKCGLMGTIVYADGEKE 151

Query: 149 ------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                       V   +ARM  +    +  +  S  G  +   +       V T + P H
Sbjct: 152 QEADRTTPESCDVQRLIARMKRNGCTSVI-MEASSHGANQGRLNGCLFQGMVFTNLTPEH 210

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +E    AK ++FE             D  +     + +     +        + 
Sbjct: 211 LDYHKDMEHYFEAKKKLFEEYVSENWCGAVNSDDEYGRRLLRIYGKKCLSFGLDSTRHHD 270

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                 +   SE S          +++     G     N L  + I   +        K 
Sbjct: 271 VQLQNFYMTLSELSMKVQFFNSDPIDITLPLTGRFNIYNALGAMAICYKMGVAPLVIKKG 330

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L       GR ++Y              + +A         +VLS +     G+ I+V G
Sbjct: 331 LESMPQVPGRLEKYFFENEVCGVVDYAHTPDA-------LENVLSALREVCHGKIISVFG 383

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSE--- 428
                G      +  L   ++      + ++           + +A+ + I         
Sbjct: 384 H----GGERYQANRPLLGQVAARLADIIIVTMDNSRSEDPAKIAEAIEQGIASVVEAPPH 439

Query: 429 ----TMDGLFLFIQSSLVDGDVVVVKS 451
                 +       S    GDVVVV  
Sbjct: 440 YRILDRNEAVRTALSMAKPGDVVVVTG 466


>gi|270157404|ref|ZP_06186061.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|289164202|ref|YP_003454340.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269989429|gb|EEZ95683.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Legionella longbeachae D-4968]
 gi|288857375|emb|CBJ11203.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Legionella longbeachae NSW150]
          Length = 483

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/457 (15%), Positives = 143/457 (31%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI--GSL 81
              + G+  DSR I P + F A  G   DG  FI +AV  GA  V  +            
Sbjct: 17  DCLITGLENDSRRIHPGDLFIAYAGAAADGRLFIDNAVSSGAVAVAYDPADFPLNCVLPE 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           S+P   V ++   L  +A            I  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  SVPCIPVPELSTQLPNIAKQFYDNPACFLNITGVTGTNGKTTIAYQLAQAHHLLGQKAAY 136

Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185
           IG+                P +L    +   +   +     + +S     +     +  +
Sbjct: 137 IGTIGQGNVNELRLVDNTTPDSLCLQKLLHQYKSQDMRQVCMEVSSHALAQHRVDALEFN 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     +E  A AK+ +F        I    D     +  A    +   
Sbjct: 197 QAIFTNLTLDHLDYHHSMENYARAKSLLFARESLEWAIINQDDAYHKIMAAAIKPQVKK- 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  ++ D + + W      + +EV        +    +G     N L     +  
Sbjct: 256 --LTYGIHQDCDVRAKNWSMDIYGTEIEVHSPWGKHHIKIKSLGQFNIYNSLAIFSSLLA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                +  +  ++      GR       +    + L+D ++  +        + L  ++ 
Sbjct: 314 ANYIPEQVVDVMAQLKAAPGRM----EIVAHSPYVLVDYAHTPDALE-----NALMTLNQ 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
             +GR   V G     G         +   ++      + ++  +            +  
Sbjct: 365 LKKGRLWVVFG----CGGDRDKTKRPIMGKVADKLADEIVITSDNPRTEEPQIIINEISK 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S  V      +    +      + DV+++  K 
Sbjct: 421 GIALSTKVIQLVNREEAIAYALDKADENDVILIAGKG 457


>gi|90407779|ref|ZP_01215957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
 gi|90311139|gb|EAS39246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychromonas sp. CNPT3]
          Length = 491

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 145/460 (31%), Gaps = 44/460 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               V G+S+DSR I     F A++G   DG  FI  A+ +GA +V+  T   A  G + 
Sbjct: 16  ANLDVQGMSLDSREIKKNGLFVALQGAQLDGRSFIEKAIHQGACVVLSETMHSAEHGDIK 75

Query: 82  ---SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-IALSSIKK 135
               +    V  +   ++++A       ++   +I ITG+ GKTT   +L         K
Sbjct: 76  MHAQVAEILVFKLPYLISQIAYQFYFPKKNLHKVIGITGTNGKTTIASLLANALQLLDVK 135

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV------------- 182
                   N   G   +     +D      EL        ++    V             
Sbjct: 136 NAQMGTIGNGLFGQLKSSLNTTLDAISIFAELASYQQQGAQYTLMEVSSHGLDLGRVQAL 195

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
             + A+ T +   HL +   +        +            +N DD   E+  ++    
Sbjct: 196 PFYSAIFTNLTRDHLDHHGTM-ACYGLAKKRLFSEYSLQQRIINIDDPTGEMWLSEFSDA 254

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                 S+GK+ N        +   ++  +    Q    +       Y       ++  +
Sbjct: 255 -----ISYGKATNQKQYFTVKEIFYQKQGICFNFQSSWGDGQISAPFYGHFNVQNLSAVL 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L                    G+  +   ++   T + + Y   P +++ A+  L Q
Sbjct: 310 CQLLAEGFSITQLKKVFLKLNTVPGRMEQYYFSKQDITFVVD-YAHTPDALEKALQALHQ 368

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413
            S  GE   +   G   + G+  +         ++    S V L   +         +  
Sbjct: 369 HSQKGELICLFGCGGDRDTGKRPE------MAKVAEKLASQVILVDDNPRTEQASVIMQD 422

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +   V    + +    +       GD+++V  K 
Sbjct: 423 ILAGFTKKEGVQCIHSREEAIRYALKHASAGDIILVAGKG 462


>gi|325132960|gb|EGC55637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M6190]
 gi|325138948|gb|EGC61498.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis ES14902]
          Length = 492

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|113971903|ref|YP_735696.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
 gi|113886587|gb|ABI40639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-4]
          Length = 493

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 151/480 (31%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116
           GA  V+V+TD +   G +             +   ++ +A       +     I+ ITG+
Sbjct: 57  GAIAVLVHTDSIEEQGKVIATEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164
            GKT+T ++    ++ ++ K        N   G  +       D    +           
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLYEFADKGV 176

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V   +AV T +   HL     +E  A+AK  +F        
Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALRHG 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      L   ++       +S      A F  +  +   +    ++      ++
Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQAKLVWPEGEID 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L  L  + +   D+      +    P  GR +R+  A N       
Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADNITLVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L+ +  H  G    V G     G         L    +     
Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + ++  +            +   L                  + +    GDV+++  K 
Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKG 465


>gi|298244173|ref|ZP_06967979.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
 gi|297551654|gb|EFH85519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ktedonobacter racemifer
           DSM 44963]
          Length = 507

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/468 (15%), Positives = 136/468 (29%), Gaps = 51/468 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             Q  + G++ DSR  AP   F A+ G H DG  ++  A Q GA + +     + S   L
Sbjct: 24  PEQDTILGLAYDSRKAAPGYLFIAVPGVHTDGRRYVADAAQHGAVVAL--GAPLPSAIDL 81

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            IP   V+DV  AL  LA A       +   I +TG+ GKTTT  +++    +  +    
Sbjct: 82  PIPYIEVEDVRTALADLACAFYGFPARELCTIGVTGTDGKTTTSNIISTLFDAAGRRTGM 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFG---------IFELGMSHL-------GEIRFLTHLVR 183
           + + N  +                         + E+  +H        G          
Sbjct: 142 MTTANFKLNGQEWANATRQSTLEALEIQEFLRKMVEMQATHAVIESTSHGLELQRVRGCA 201

Query: 184 PHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             + V+T I   HL     ++      A     +    +K          +  +      
Sbjct: 202 FDVGVVTNITHEHLDFHKTLDAYRRAKARLFEMLDPEQDKGQGYRKVAILNKDDSSYEVL 261

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I  +G   +A  +       + ++   + L     ++    IG     N L  
Sbjct: 262 KPYCRVPILDYGIETDAAVRAVDLHLQASRTAFRLILPDAECQIETPLIGRFNVSNCLAA 321

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +         +D   + L+      GR +      N         + ++          V
Sbjct: 322 IATAYSQGIPLDVITQTLATIKGVPGRMEHIDEKQNFSVIVDYAHTADS-------LQKV 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-------- 411
           L+ + P   G+ + V G   E           +   ++        ++            
Sbjct: 375 LAILRPVTTGKLMVVFGSAGE----RDRQKRPVMGSVAAQMSDFFVITDEDPRDEDRESI 430

Query: 412 -LALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +     ++                      S    GD V++  K 
Sbjct: 431 LREIAVGAEQAGKQEGSDFLCIADRREAIATAFSRAQPGDTVLLAGKG 478


>gi|261378428|ref|ZP_05983001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
 gi|269145206|gb|EEZ71624.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria cinerea ATCC 14685]
          Length = 492

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYISAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAATMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL+           +YS+G S N
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCSDLAVYSYGFSGN 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++       D  + 
Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAGCIALLCANGYPFDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQNIINDILPAVPTPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERATANDIILIAGKG 464


>gi|111115024|ref|YP_709642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
 gi|123341397|sp|Q0SNW2|MURE_BORAP RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|110890298|gb|ABH01466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Borrelia afzelii PKo]
          Length = 505

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 156/481 (32%), Gaps = 57/481 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P   FFA+ G  +DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGVTYSSKLVLPGFVFFALPGIRFDGHDFIEMAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + DM     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVHSRDM--DFYSPNVTYIKVDDFSIRKFMSNFSNVFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +   V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   ++      K+     KS  ADF +    +  + +  E   +G      
Sbjct: 244 GFGVINLDDFYSSEFKNAVKKSFTYSLKSSQADFFVSFIDEKIDSTRFEFYYKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLVCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   +S      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            L             +  +   +   +    + +            S    GD+VVV  K
Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNQDLFFIPDRKQAIEKAISLARAGDLVVVLGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|266624667|ref|ZP_06117602.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
 gi|288863458|gb|EFC95756.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium hathewayi DSM 13479]
          Length = 301

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 13/311 (4%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            + G+ ELGMS  GE+  +  + +  +AVIT I   H+      E I   K  I +GL +
Sbjct: 1   DEIGVIELGMSEPGELTVIAGIAQIQMAVITNIGITHIEQLGSQENIFREKLSIQDGLTE 60

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G +FLN D    + L  K+ A        +G  +N  ++    +  +           +
Sbjct: 61  HGILFLNGD----DELLKKTTARDGFETIYYGTGENCHYRAVDVRLENGYPVFTAVCGDE 116

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V    +G H   N +++L + S+    ++ A K L+ F       +  +   + G  
Sbjct: 117 QVPVRLKVMGTHNVANAMVSLAVASVCGIPMEAAAKQLAEFTG----FQNRQQIYHTGGM 172

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNA+P SMKA + VL+ I      RR+AVL DM E+G  S  +H ++   ++ +
Sbjct: 173 TIIDDTYNASPVSMKAGLEVLNSI--EHSRRRVAVLADMKELGPDSPRYHYEIGTYIAAH 230

Query: 400 NISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
            +  V + G     +   +      I V+     + L  ++++ L +GD V+ K SNS  
Sbjct: 231 PVDKVAVLGEPAKEIARGVREQAPHILVYEFMDREPLVEWLKTELREGDAVLFKGSNSME 290

Query: 457 FYRLINLLLEE 467
             ++  + LE+
Sbjct: 291 LGKVAAVFLEK 301


>gi|254684768|ref|ZP_05148628.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. CNEVA-9066]
 gi|254721061|ref|ZP_05182852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. A1055]
 gi|254743600|ref|ZP_05201285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Kruger B]
          Length = 243

 Score =  133 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                  + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G         
Sbjct: 117 KDIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222


>gi|325136981|gb|EGC59578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M0579]
 gi|325202774|gb|ADY98228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240149]
 gi|325208770|gb|ADZ04222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis NZ-05/33]
          Length = 492

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|77919801|ref|YP_357616.1| UDP-N-acetylmuramyl tripeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545884|gb|ABA89446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 84/491 (17%), Positives = 149/491 (30%), Gaps = 63/491 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L Q +   ++     G V+G+  DSR + P   FFA++G   DGH FI  A+ +G
Sbjct: 1   MNISVLCQILDPSAVSGSTDGVVSGLYYDSRRVQPGGLFFALRGASVDGHRFIEDALARG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  VV+ +          +    V D   A+   A A          ++ ITG+ GKTT 
Sbjct: 61  AVAVVMESPH---TLPTGVTGILVKDGRRAMALAAAAYFGDPSKDMLVVGITGTNGKTTV 117

Query: 123 KEMLTIALSSIKKTY---ACIGSYNNHIGVPLTLARMP-------------VDVDFGIFE 166
             ++   L +          +        +P +                     D  + E
Sbjct: 118 SYLVESILLAAGYRPAVLGTVDYRFEGAHLPSSHTTPESVDLMETIADFRGRGADALVLE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R         + V T + P HL     +E    AK  +F GL       + 
Sbjct: 178 VSSHSLEQRRVDGVW--FDVGVFTNLTPEHLDYHGDLETYFGAKLRLFNGLGDRSPRQVV 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +               +  +   G +   D                ++    +  +   
Sbjct: 236 ANSDDSW---GARLGAMLPAVIRCGHASECDVTADDVTISVAGIAGSLRTARGTAALQSP 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G +  QN+L   G+ + L     T  KAL+      GR        N+    ++ +  
Sbjct: 293 LVGDYNLQNLLCAAGVGAALDMVPATIAKALAQAPQVPGR---LESIANERGALVLVDYA 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL  +      R + V G     G    +    +   ++        L
Sbjct: 350 HTGDA----LENVLVTLRQLQPRRLLCVFG----CGGDRDAGKRPVMGEIAARLADVAIL 401

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE-------------------TMDGLFLFIQSSLV 442
           +  +       A+   +   +   + E                          F  S L 
Sbjct: 402 TSDNPRSEDPLAIMQQVESGLRRIHEEPWSLQQARQAAGRGYLSLSDRREAICFAVSLLQ 461

Query: 443 DGDVVVV--KS 451
             DV++V  K 
Sbjct: 462 PDDVLLVAGKG 472


>gi|15676327|ref|NP_273463.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|21362724|sp|Q9K0Y9|MURE_NEIMB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|7225637|gb|AAF40853.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis MC58]
 gi|316984921|gb|EFV63877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Neisseria meningitidis H44/76]
 gi|325140929|gb|EGC63436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis CU385]
 gi|325199603|gb|ADY95058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis H44/76]
          Length = 492

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  + G+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVAGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAVRYAVEQAAANDIILIAGKG 464


>gi|297620596|ref|YP_003708733.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297375897|gb|ADI37727.1| N-acetylmuramoylalanylglutamyl DAP ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 489

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 153/481 (31%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    I    +  + GI   S+ +AP   F A KG  +DG  +I  AV+ G
Sbjct: 1   MKLKRLIKDLPNAEIKGSKEIEITGICAHSKQVAPGNLFIAKKGRTFDGSQYIAEAVETG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  V+          SL +      +V     KL  A   R   +  ++ +TG+ GKTT 
Sbjct: 61  AAAVL----NDIFDPSLKVSQIIHPNVAVVEGKLVSAFYHRPGEELLMVGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARM-------PVDVDFGIFE 166
             ++     S++     IG+    IG          P                    + E
Sbjct: 117 SYLIKHLFDSLEMRPGLIGTIEYLIGDHAAPATHTTPDVATNHKLLREMVNQRSQAAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L + R         + + T ++  HL     ++     K ++F  L+       N
Sbjct: 177 VTSHALHQGRVSEIS--FDVGIFTNLSQDHLDYHKTMDAYCEEKRKLFLSLDPEAKKRKN 234

Query: 227 YDD----SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           Y      +  +    K        I ++G + +AD +  + +  +E     +  QGK   
Sbjct: 235 YPKAAVVNIDDPWFEKIIDGCRVPIITYGIANHADLRAEEIQLGAEGIVYTLVHQGKRYP 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG     N L T+G    L   ++  + A+  F P  GR +          F   
Sbjct: 295 VSLPLIGRFNVLNSLATIGCGISLGVPLNKVLDAVKSFPPVPGRLEYVPNKRGLKLFVDF 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A         +VL+ +    +G+ I V G     G     +       ++     
Sbjct: 355 AHTPDA-------LKNVLNCLKELTQGKLIVVFG----CGGDRDPYKRSQMGRIAEEFSD 403

Query: 403 HVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              ++  +         +  +             E                DVV++    
Sbjct: 404 LAIITSDNPRSENPANIMDQIVAGFNDPSCFIKIEDRRKAIEEAIHRATPEDVVLIAG-R 462

Query: 454 S 454
            
Sbjct: 463 G 463


>gi|227327095|ref|ZP_03831119.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 495

 Score =  133 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMTLDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V   +  A+ G++     +PV  + ++   L+ LA     +    +  I  +     
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+              +                 
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPAENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFGEHRVGQMIIN 240

Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+            +    +  +       + +         E+ 
Sbjct: 241 ADDEVGLRWLAQLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGHGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     NML+ L  +  L   +D  + A S   P  GR + ++             
Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFQAEGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV+V  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467


>gi|65319483|ref|ZP_00392442.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 252

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                  + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G         
Sbjct: 126 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 186 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 231


>gi|217967638|ref|YP_002353144.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
 gi|217336737|gb|ACK42530.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dictyoglomus turgidum
           DSM 6724]
          Length = 492

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 85/479 (17%), Positives = 160/479 (33%), Gaps = 50/479 (10%)

Query: 4   LWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +    ++++ ++ + I       G + GI+ DSR +     FFA+ G   DG  +I  A+
Sbjct: 1   MRKLKEIVEYVREYVIETRGYLDGNITGIATDSRKVKEGNIFFALPGTRDDGRRYIGDAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119
            KGA  V              + +  V ++   L+K+++           I+ +TG+ GK
Sbjct: 61  SKGARAVFFE--GEVDNFERDVALIRVKEIFDVLSKVSLYFYNFPSKHLNIVGVTGTNGK 118

Query: 120 TTTKEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGIF 165
           TTT  +L                        SY ++   P            V+      
Sbjct: 119 TTTTSLLYHYWKGKGLKSGLIGTIDYRIDEESYPSNFTTPQPQELQEILSKMVNKGVKFL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S           V     V T +   HL     +E+   AK +IF+ LE  G   +
Sbjct: 179 AMEVSSHALSLKRIDGVSLKAVVFTNLTQDHLDFHKTMEDYFQAKLKIFDHLEDEGFAVI 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D+ + + +              +   +  D  L+K++  +    +E+        +  
Sbjct: 239 NRDNEWTKRI------NLADKRVLWASLEEGDIYLKKYENTNSGMILEIATPLGDTVIDT 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+L  +G++  L   ++   K LS F   +GR +  R   N         +
Sbjct: 293 KLRGKFNIYNILFAVGVLIGLGEPLEDISKILSTFKGVKGRLEFIREGQNFNVIVDYAHT 352

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          +VL  I    +GR I V G     G             +S      V 
Sbjct: 353 PDG-------LYNVLQTIKEFTKGRVIVVFG----CGGDRDPTKRGKMGEISAKLADVVI 401

Query: 406 LSGFH---------VLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         +  ++  + R   + Y   E  +           + D V++  K 
Sbjct: 402 VTSDNPRTEDPMKIIREIEKGIKRVGRLDYFVIENREEAIKKAIEIAKEDDSVLIAGKG 460


>gi|70732389|ref|YP_262145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
 gi|68346688|gb|AAY94294.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf-5]
          Length = 487

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 154/455 (33%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGAKFDGRAHIADALQRGAAAVAYEVEGATVLPLTDV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A         +  ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L            +                + +S  G  +     +   +A
Sbjct: 135 TLGTGFHGALQSGMHTTPNPIAVQATLADLKNAGAKAVAMEVSSHGLDQGRVAALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E   +AKA++           +N DD F   L A  H   + T 
Sbjct: 195 VLTNLSRDHLDYHGTMEAYGAAKAKL-FAWNDLRCRVINLDDDFGRQLAADKHESRLITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +   A    R+ +   +     +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLEDAAAYLYCREARFDDDGVRATLVTPQGEHHLRSCLLGRFNLSNVLAAVGALLGLE 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +  L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 312 YALDEILAVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLLALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           +GR + + G     G         L   +       V ++  +            ++   
Sbjct: 365 KGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDDIRAGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +          + +S    DVVV+  K 
Sbjct: 421 SAAEKVEFVAGRGLAIARLIASASADDVVVLAGKG 455


>gi|209550179|ref|YP_002282096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535935|gb|ACI55870.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 505

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 143/460 (31%), Gaps = 39/460 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+    G      ++G+S DSR +AP  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 34  IEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQA 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           +       SIPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  V-----ETSIPVLAVKEPRRFLSIAASRFFGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179
               A IG+             +       + +              +  S  G  +   
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELAGEGVTHAAMEASSHGLDQSRL 208

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+   A  T +   H+     +E   +AK  +F+ L K     +  DD +       +
Sbjct: 209 DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFQLLPKGAPAVIFADDPWSAQAIKAA 268

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              G        K      +  +  +  + + + +  +   +++            +   
Sbjct: 269 ADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIDGEIFEVDIPL-----AGDFQVANA 323

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +       A++      G   R     +     L    Y   P ++    +V
Sbjct: 324 LVAAGLAMSTGVEPKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
           L  + P   GR + V G     G         +   ++      V ++  +         
Sbjct: 381 LGSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 436

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 437 RAEIMAAASGASEIADRAKAIREAVGMLRSGDTLIVAGKG 476


>gi|85703614|ref|ZP_01034718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
 gi|85672542|gb|EAQ27399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseovarius sp. 217]
          Length = 467

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/442 (17%), Positives = 153/442 (34%), Gaps = 33/442 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGV 88
           DSR + P   F A+ G    G +FI +A+++GAG ++ +        A +      +   
Sbjct: 2   DSREVKPGYLFAALPGTKVHGAEFIQYALRQGAGAILTDAIGARLAQAFLSLSDAALVVA 61

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------IGS 142
           +D    L   A         T+IA+TG+ GKT+           +             G+
Sbjct: 62  EDPRQTLAYAAALWFGAQPETMIAVTGTNGKTSVATFTRQIWERLGFDAVNLGTTGVEGA 121

Query: 143 YNNHIGV----PLTLARMPVDVDFGIF---ELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           Y+  +G     P+TL RM    +        +  S  G  +     V    A  T     
Sbjct: 122 YSAPLGHTTPEPITLHRMLAKCELAGVTHAAMEASSHGLAQRRLDGVHLVAAGFTNFTQD 181

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL   +  +E  +AKA +F  +     + +   +       A       + + + G+   
Sbjct: 182 HLDYHASFDEYFAAKAGLFSRVLPEDGVAVINIEDSRGAEMAAIATERGQDLITVGREVG 241

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD +L+  +  +    +  + + +  ++    IG   A+N+L+  G+     AD +   +
Sbjct: 242 ADLRLKAQRFDATGQVLRFEWEDEVHQLRLDLIGGFQAENVLLAAGLAIGAGADAERVFE 301

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L       GR +             +D ++  +  +       +  + PH  GR IA++
Sbjct: 302 TLPGMKTVRGRMQLAATRDTGA-TVFVDYAHTPDAVAT-----AIKALRPHVMGRLIAIV 355

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV-HYSET 429
           G     G         L    +      V ++          +++ A+ +          
Sbjct: 356 GA----GGDRDRAKRPLMGQAAGTYADLVIVTDDNPRSEDPASIRAAVMQGCPGASEVGD 411

Query: 430 MDGLFLFIQSSLVDGDVVVVKS 451
                L    +L  GD +++  
Sbjct: 412 RAEAILRGVDALGPGDALLICG 433


>gi|158319350|ref|YP_001511857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139549|gb|ABW17861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 503

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 152/493 (30%), Gaps = 51/493 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL +I+  ++       + GIS  S  +     F  ++G   DGH ++  A Q 
Sbjct: 1   MMKLKELLSSIEIKNMDDERDLEIYGISYHSGKVEKGHLFVCVRGYKTDGHQYLGKAAQN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA   +V          + IP + V +   AL KL          K  +I IT + GKTT
Sbjct: 61  GAVAAIVE----ELQEDVDIPQYVVSNSRIALAKLGARFYGDPSQKMKLIGITATNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPVDVDFGIFELGM 169
           T  M+   L    +    IG+    I    T               +   VD G+  + M
Sbjct: 117 TSFMVNAILEKSGRKTGLIGTVVIKIDEESTPAELTTPESLDLQHYLSQMVDKGVSHVTM 176

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           V   I  +  I+  H+ +    E+   AK+ +     +     LN 
Sbjct: 177 EVSSAALETHRVESVAYDIVTLNNISREHIDSHGSFEKYFEAKSSLIRNASENSIAVLNL 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNAD--------FQLRKWKQCSEQSWMEVQLQGK 279
           D  +   L  ++ A  I    +  +   A               +     +    Q +  
Sbjct: 237 DCPYSASLVDQTKAEVITFGVNSKEGHIACKDLDLTTGRAKFTLEILKPFTANGQQYEPS 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             EV     G H   N ++ + +  +      T  + L  F   E R +       +   
Sbjct: 297 EFEVQLLVPGLHSVYNSMVAITVSLLCGVSTATIQETLKTFAGVERRFQFIFEEDIKIID 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSL 398
                S N +          L  +      +   V     E G      + + +A     
Sbjct: 357 DHFANSGNIDV--------TLGTLKYMDYEKLHLVYAIRGERGPTVNRENAEAIARWAPK 408

Query: 399 YNISHVW-------------LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
             I+ +              ++   +   ++ +    I V   + +     +      +G
Sbjct: 409 LGITEIIATKSVSHVTHKDRVTEAELTVFQEVMRDAGIKVDLFDELPDSICYAIGKANEG 468

Query: 445 DVVVVKSSNSCGF 457
           D++++       F
Sbjct: 469 DLILLGGCQGMDF 481


>gi|166032721|ref|ZP_02235550.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
 gi|166027078|gb|EDR45835.1| hypothetical protein DORFOR_02436 [Dorea formicigenerans ATCC
           27755]
          Length = 488

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/481 (15%), Positives = 139/481 (28%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       +  +  DSR + P   F  I G   DGH ++    ++G
Sbjct: 1   MKLTKLLERLDYKVVAGSDNIEITELVNDSRKVVPGSVFVCISGAVSDGHQYVKDVAERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109
           A  V+V  D+        + V  V++   AL  ++ A                       
Sbjct: 61  AAAVIVEKDVEV---PEGLTVIKVENTRYALALMSAAYFGYPAEKLKTIGITGTKGKTTT 117

Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + AI   VG          A+   K   +   +  ++         +    D  + E
Sbjct: 118 TYMVKAILEEVGHKVGLIGTIEAIIGDKTIPSNNTTPESYTIQKYFAQMVEAGCDCVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S  G +   T  +   I + T +   H+        E+    K  +           
Sbjct: 178 V--SSQGLMLHRTAGIMFDIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FKQC 228

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281
                +  +             I +FG  + AD +    K  S   +             
Sbjct: 229 KVGIGNVDDKWFEDVFKDATCEIETFGFGEKADLRAIDVKHISRPGYLGVWYHVTGLMDF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L  + +       V+    AL           R         FTL
Sbjct: 289 DVEIDIPGEFSVYNSLTAIAVCRHFNVPVEKIKDALK----VAKVKGRIEMVKVSDDFTL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +       A  S+L  +  +  GR + V G     G  S++   ++ EV    + 
Sbjct: 345 MIDYAHNA----MALESLLHTLRDYNPGRIVTVFG---CGGNRSKTRRYEMGEVSGKLSD 397

Query: 402 SHVWLSG----FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450
             +  S         A+ D +    +     Y +         +       GDV+V+  K
Sbjct: 398 FTIITSDNPRFEEPQAIIDDIIVGMKKTDGKYIDICDRKEAIRYAIEHGRPGDVIVLAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|289522911|ref|ZP_06439765.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503935|gb|EFD25099.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 505

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 143/458 (31%), Gaps = 46/458 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  +  ISIDSR +     F  ++G    G +F   A ++GA  V+ +  +      L+I
Sbjct: 30  ENEILEISIDSRQVGEGALFCCLEGTKRKGVEFAQDAQRRGAVAVLTSERV----DDLAI 85

Query: 84  PVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           P   V D   A   LA A       SK  +I +TG+ GK+TT  ++   L +       I
Sbjct: 86  PQLIVKDAGEACG-LASAYLYGLPTSKLLMIGVTGTNGKSTTTYLIKSILDTGDMKCGLI 144

Query: 141 GSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+   + G     A                 VD       +  S  G  +          
Sbjct: 145 GTIVYNDGKSHEDADRTTPQAPLIQSLLNKMVDNRCHACVMEASSHGIEQKRIFGCLYDR 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           AV T + P HL     +E    AK +   + +       +N DD + E +  +     + 
Sbjct: 205 AVFTNLTPEHLDYHGDMENYFCAKRDLFIKYMRGDWKASINTDDPYGEKIANEFAPHVLG 264

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                         +R+         +          V    +G +   N L    +   
Sbjct: 265 FSLRQKADNAFYGSIRRSSIRGIIMDISFPDGSTLENVTLPLLGEYNVLNALAASSVAWS 324

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +   K L    P  GR +RY              + +A          VLS + P
Sbjct: 325 LDFDAEVIRKGLENCPPVPGRLERYFVEDGPVCIIDYAHTPDA-------LEKVLSTVKP 377

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKD 416
              GR   V G     G      +  +   ++      + ++  +  +         + D
Sbjct: 378 LCSGRVWLVFGH----GGERFKENRPILGSIAARFADCIVVTMDNPRSEDPRDIALQIAD 433

Query: 417 AL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +   P S              F       GDVV+V  
Sbjct: 434 GIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTG 471


>gi|126729246|ref|ZP_01745060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
 gi|126710236|gb|EBA09288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sagittula stellata E-37]
          Length = 496

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/469 (17%), Positives = 159/469 (33%), Gaps = 39/469 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL     G +        V  +++DSR +     F A+ G    G +FI +A++ GA
Sbjct: 10  SLRDL-----GLTARGGRDVKVTDLAVDSRDVREGYLFAALPGTRVHGAEFIQYALRMGA 64

Query: 66  GLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           G V+ +          +G     +   +D   AL   +         T++A+TG+ GKT+
Sbjct: 65  GAVLTDAAGAKIAADVLGGADAALIVAEDPRQALAYTSALWFGAQPETMVAVTGTNGKTS 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLARMPVD-VDFGIFE--LG 168
                      +      +G+                 P+TL RM     + G+    + 
Sbjct: 125 VATFTRQIWQELGLRAVNLGTTGVEGDWTAPLKHTTPEPITLHRMLAGAAESGVTHAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V+   A  T     HL   +  E+  +AKA +F  +     + +   
Sbjct: 185 ASSHGLSQRRLDGVQLMAAGFTNFTQDHLDYHASFEDYFAAKAGLFARVLPEDGVAVINI 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    +          + + + G+ + AD  L   +  +    + +  +G+  +     I
Sbjct: 245 DDPRGVDMVAIARARGQEVLTVGR-EAADICLEAQRFDATGQEIRLSFEGEVRQERLGLI 303

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A N+L+  G+V     D D     L +     GR +      N      +D ++  
Sbjct: 304 GGFQADNVLLAAGLVIACGGDPDDVFDVLPMLGTVRGRMQLAAMRDNGA-AVFVDYAHTP 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  +       +  + PH  GR +A++G     G         L    +      V ++ 
Sbjct: 363 DAVAT-----AIKALRPHVMGRLVAIVGA----GGDRDKGKRLLMGQAAAEFADSVIVTD 413

Query: 409 -----FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    +++   +  +             L    +L  GD +++  
Sbjct: 414 DNPRSEDPASIRAMVMEGAPEALEVGDRAEAILRGVDALGPGDALLICG 462


>gi|269303294|gb|ACZ33394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 483

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 154/473 (32%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +Q    G V    V  ++ DSR +   + F A KG  YDG+DF   A+  G
Sbjct: 1   MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVGVGDIFIAHKGQRYDGNDFAADALANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
           A  +  +         LS+      ++     +L+        SK   I +TG+ GKTT 
Sbjct: 61  AIAIASS----LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++   L S +K    +G+  + +G               +   LA M       +  +
Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S +G             AV+T I   HL      E   +AKA++F  +  +G + +N 
Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFEAYVAAKAKLFSLVPPSGMVVINT 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D  +     ++        + ++G    AD++    +  S  +   +    + +      
Sbjct: 236 DSPY----ASQCIESAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG +   N+L  +  V          +                        +      Y 
Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCPVYID----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ L ++ P   GR I V G     G         L   +       V  S
Sbjct: 348 HTPDALDNVLTGLHELLPE-GGRLIVVFG----CGGDRDRSKRKLMAQVVERYGFAVVTS 402

Query: 408 G----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + +       +            +  S   D D+V++  K 
Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455


>gi|160946447|ref|ZP_02093656.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
 gi|158447563|gb|EDP24558.1| hypothetical protein PEPMIC_00407 [Parvimonas micra ATCC 33270]
          Length = 516

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/501 (16%), Positives = 162/501 (32%), Gaps = 44/501 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +     LL+ ++   I         +  I  +S++++  + F AI+G   DGH +I  A 
Sbjct: 5   IMKLKTLLEDLEILEIKGNLDIEKEIQKIEYNSKNVSENDIFVAIRGYKTDGHIYIKSAK 64

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           ++G    +V          L +    V +   AL+K++     +      II IT + GK
Sbjct: 65  KQGCYACIVE-----DFVDLDVAQIKVKNSRAALSKVSHNYYGKPSEDLDIIGITATNGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           TTT  ML             IG+    I   +  + +                    D  
Sbjct: 120 TTTSFMLKKIYEEAGSKVGIIGTVYVKIDDFMIPSYLTTPESLDLQKYLSIFRERKADKV 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E+  S           V  +I   + ++  H+      E     K+++    ++    
Sbjct: 180 IMEV--SSAALELDRAKDVDYNIVSFSNLSKEHMEQHGSYEAYKREKSKLITEAKEHQIA 237

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--------LRKWKQCSEQSWMEVQ 275
            LN+D+   + L +K+ A              +              +    +       
Sbjct: 238 VLNFDNPEIKELASKTKAKVFSFSLDDSLENFSMKNLDLSTGRGKFDFIINRDIETKSGI 297

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L+     V  +  G+    N ++ + I  +   D+ T  +AL +F   E R +       
Sbjct: 298 LKKGEFHVELNTAGFSSVMNSMVAISISLLDGIDIVTIQRALRIFRGVERRFEIIFEKDF 357

Query: 336 QGFFTLIDESYNANP--ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +          N +    ++        +      G R   L +   +  +  +  + L+
Sbjct: 358 KIIDDHFANEVNIDVTLETLCKMKYNDIKFLYAIRGNRGVELNEENALKIIEWNNKLKLS 417

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           E+ +  +   V          +D         +I VH  +T+      +       DVV+
Sbjct: 418 EIYATLSRDTVTWKDEVSDEERDIFLKIMKENNIKVHLFDTLKEAVETVIDIAQKDDVVM 477

Query: 449 VKSSNSC-GFYRL-INLLLEE 467
                      R+ +N +LE+
Sbjct: 478 FAGCQGMDKAGRIGLNYILEK 498


>gi|330811584|ref|YP_004356046.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327379692|gb|AEA71042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 487

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 156/455 (34%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG D I  A+++GA  V         +    +
Sbjct: 15  DLLIRELALDSRNVRAGDLFLAVPGARFDGRDHIADALKRGAAAVAYEVQGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +  N     L            +                + +S  G  +     +   +A
Sbjct: 135 TLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     ++    AKA++           +N DD F   L A+     + T 
Sbjct: 195 VLTNLSRDHLDYHGTMQAYGEAKAKL-FAWNDLKCRVINLDDEFGRQLAAEKRESRLITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +   A   +R+ +   E     +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLEDAGAYLYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +K L       GR    R         ++D ++  +         VL+ + PH 
Sbjct: 312 YALDEILKVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLTALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           +G+ + + G     G         L   +       V ++  +            ++   
Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDDIRAGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +V +          + +S    DV+V+  K 
Sbjct: 421 MAVDNVTFVAGRGQAIAQLIASASADDVIVLAGKG 455


>gi|255037272|ref|YP_003087893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dyadobacter fermentans DSM 18053]
 gi|254950028|gb|ACT94728.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dyadobacter fermentans
           DSM 18053]
          Length = 491

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 145/474 (30%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  ++G  I       V  I +DSR + P   F A++G   DGH FI  A   GA 
Sbjct: 7   LSSLLGEVKGAIIHGYADVTVKNIILDSRKVLPGSLFVALRGTQVDGHQFITTAADLGAV 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            ++     +       I    V+D   A+  +A A        +  + +TG+ GKT+   
Sbjct: 67  AILCEE--LPEHVREDITYIQVEDSAAAMGHIAAAFYGHPSKKVKLVGVTGTNGKTSVAT 124

Query: 125 MLTIAL-------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-ELGMS 170
            L                  +  +      ++     V L      +         + +S
Sbjct: 125 FLFQLFRALGYRSGLLSTVQNQIEDEVIPSTHTTPDAVALNALLAQMAARNCSHVFMEVS 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     + T I   HL      +    AK   F+ L K+    +N DD 
Sbjct: 185 SHSVAQHRITGLHFAGGIFTNITHDHLDFHKTFDNYIKAKKGFFDALPKSAFALVNIDDR 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A          ++ +         +    +   + +   S EV    IG 
Sbjct: 245 RGTVMVQNTKARV--------ETYSLQTLATFKGKIISDTLAGMHMDINSQEVWFRVIGR 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  +  LS      GR +++  A            Y   P
Sbjct: 297 FNAYNLLAVYGAAVLLGEKEEAVLTELSNLKSPPGRFEQFHSADLIVGIVD----YAHTP 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  +  ++ +    E     V       G    +        ++    + V L+  +
Sbjct: 353 DALENVLETITHLRNGNEQVVTVV-----GCGGNRDAEKRPKMAEIACRYSNRVILTSDN 407

Query: 411 VL-----ALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + D + +             E      L        GD++++  K 
Sbjct: 408 PRFEDPMDILDQMRKGVPPLDYKKTTVIEDRHEAILKAGLEAQPGDIILIAGKG 461


>gi|311029923|ref|ZP_07708013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. m3-13]
          Length = 418

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 145/429 (33%), Gaps = 38/429 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L+Q +  + +       ++ I +DSR +     FF IKG   DGH F   AV KG
Sbjct: 1   MKLQQLIQYLHRYEVSSKYNPEISSIVMDSRKVNEGSLFFCIKGYTVDGHQFAQEAVNKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++    +      +++PV  V D + A+  LA     +   K  +I +TG+ GKTTT
Sbjct: 61  AVAIISEKPL-----DVAVPVIVVPDTMRAMAILADVFFQQPTHKLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFE 166
             ++       ++    IG+    IG                       +   VD  + E
Sbjct: 116 THIIESIFQHHQRKTGMIGTIYMKIGNKTYPVKNTTPDALTLQDSFHQMVENKVDTVVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A +      G        
Sbjct: 176 VSSHALHMGRVYGC--DFDVAVFTNLTQDHLDYHKTMEEYRYAKSLLFSSLGNSYNLAKP 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +             + ++G ++ +D + +  K  ++ +  ++    K + + 
Sbjct: 234 KYAVLNADDPASDIYKRATAAQVITYGINETSDIRAKNVKTSAKGTTFDLVYDNKVVPIN 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +    +    ++T I  +       GR +      +         
Sbjct: 294 LKLVGQFSVYNVLAAISASYVSNIPMETIIPVVENMRGVPGRFEAIEAGQDFTVIVD--- 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q+S +       ++G     G         L   +++   S  
Sbjct: 351 -YAHTPDSLENVLKTTKQLSQNN---IYCIVG----CGGDRDRSKRPLMAAVAVNYASKA 402

Query: 405 WLSGFHVLA 413
             +  +  +
Sbjct: 403 IFTSDNPRS 411


>gi|315498854|ref|YP_004087658.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
 gi|315416866|gb|ADU13507.1| UDP-N-acetylmuramyl-tripeptide synthetase [Asticcacaulis
           excentricus CB 48]
          Length = 487

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 163/483 (33%), Gaps = 54/483 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L    D+L+        +     V G++ DSR + P   F A+ G   DG +FI  A
Sbjct: 1   MSGL-RLSDILR------RDLDVDPVVTGVTADSRKVGPGTLFCALPGTARDGREFIPQA 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+   D +A+  +    +    DV  A    A A       T +AITG+ GKT
Sbjct: 54  LSQGAAAVLAPEDTLATASN----ILTTYDVRRAYALAAKAFYGAQPKTCVAITGTNGKT 109

Query: 121 TTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLARMPVDV-----DFG 163
           +         + +    A +                   G+    A    +        G
Sbjct: 110 SVATFCRQMFAHMGYHSASVGTLGIVTQNGAAEHAITPPGLTTPDAADIAEHLASLARDG 169

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +    L  S  G  +     V    A  T +   HL   + +E   +AK  +FE L   G
Sbjct: 170 VTHLALEASSHGIDQRRLDGVTLTAAGFTNLTQDHLDYHATMEAYRAAKLRLFEQLLPRG 229

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +   DS      A S      ++ S G+       L       +   + ++ QG+  
Sbjct: 230 RVAVLNADSDAYNAFAASAITAGASLLSVGERGQH-LTLTHRDLTVDGQILYLEHQGRKF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           EV     G   A N L+  G+        +  ++AL+      GR +R     N      
Sbjct: 289 EVKLKLAGLFQASNALVAAGLCLAAGQKAEPVLEALTHLTGARGRLERVGSTGNGA-EIY 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +         VL  + PH +GR + V G     G             ++    
Sbjct: 348 VDYAHTPDGLET-----VLKALRPHTQGRLVCVFG----CGGDRDRGKRPQMGAIAERLA 398

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV- 449
             V ++  +            +   L  +   +  E            +SL  GDV+VV 
Sbjct: 399 DRVIVTDDNPRSEEPASIRAEIMAGLAGTQSSNVLEIGDRRQAIFEAVASLKTGDVLVVA 458

Query: 450 -KS 451
            K 
Sbjct: 459 GKG 461


>gi|260899190|ref|ZP_05907585.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308107123|gb|EFO44663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 493

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++ 
Sbjct: 21  ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A
Sbjct: 81  IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182
            +G+  N  G    L          +                  L +S  G I+     +
Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V T ++  HL     +EE A+AK  +F   +    I    D+      K  ++A+
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQAIINVDDEVGAAWAKQLTNAI 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +            +         +    Q     +    IG   A N+++    
Sbjct: 259 AVSLAPT--TEFKHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D    +   +   P  GR + ++             + +A           L  
Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVVDYAHTPDA-------LEKALQA 369

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H +G+  A+ G     G    +    +   ++      V L+  +            
Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVFIVKD 425

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L +               +   +    D++++  K 
Sbjct: 426 MLAGLSKPAEAIVQHDRFKALSYALENAAPQDIILLAGKG 465


>gi|254751530|ref|ZP_05203567.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           anthracis str. Vollum]
          Length = 243

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                  + I G           ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 1   MNLKKFEEVINGEGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 58

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +      +      IP+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 59  NGAIASLWKKSYGS--PPKGIPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTA 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   L S  + +   G++N+ IG+PLT+  M  D +  I E+GMS  G         
Sbjct: 117 KDIVEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRDTEILILEMGMSEKGCRIIERFTW 176

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 177 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 222


>gi|127514386|ref|YP_001095583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella loihica PV-4]
 gi|126639681|gb|ABO25324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella loihica PV-4]
          Length = 488

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 152/454 (33%), Gaps = 43/454 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SIP 84
           + +++DSR I     F A+ G   DG D++  A+ +GA   +++TD  A  G +   +  
Sbjct: 20  SHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDNGL 79

Query: 85  VFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIAL------------ 130
                 +   L+ LA       R +  +I +TG+ GKT+  +++                
Sbjct: 80  RIYFFQLQRQLSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVMGT 139

Query: 131 --SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
             + +       G+        +            +  + +S  G ++     V   +AV
Sbjct: 140 LGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDVAV 199

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     ++   +AK  +F     +  +    D    + ++ K         +
Sbjct: 200 FTNLSRDHLDYHGSMDAYGAAKQRLFRFSSLSHGLINLDDPVGRQWIQDKRC--KGLVGF 257

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    + A    ++ KQ S+     +       ++    +G     N++  LG + +   
Sbjct: 258 SIQGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLSGY 317

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +  +S   P  GR +R+              + +A           L  +  H  
Sbjct: 318 AMAQLLTQVSSLKPVAGRMERFTTQEGVTLVVDYAHTPDA-------IEQALRALRGHCR 370

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
           G+   V G     G         L    +  N   V ++  +  +      ++D L    
Sbjct: 371 GKLWCVFG----CGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPMAIIQDVLAGLN 426

Query: 423 HVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
               +            + +   +GD++++  K 
Sbjct: 427 KPQIALTQVDRQQAIREVVTLASNGDLILLAGKG 460


>gi|319411057|emb|CBY91457.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase;
           meso-diaminopimelate-adding enzyme;
           UDP-MurNAc-tripeptide synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 492

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|330950229|gb|EGH50489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae Cit 7]
          Length = 487

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F AI G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDALIRELTLDSRNVRPGDLFLAIPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLADLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDTFGRELTGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +        W++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGAWVTDDNPRSESPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFAAVDKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|315186148|gb|EFU19910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6578]
          Length = 496

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 142/471 (30%), Gaps = 47/471 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +L AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+++GA  VV
Sbjct: 1   MLDAIKPEEVRGEGDPPVRLLAYDSRDVESGALFFALPGLHTDGHRFVQDALERGAVAVV 60

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
              ++ +      +    V +   AL+  +            +I +TG+ GK++T   + 
Sbjct: 61  HERELPSYRE--GVVYLRVKNARRALSAASAVFYGHPSQDLEVIGVTGTDGKSSTTYFIY 118

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV------------------DVDFGIFELGM 169
             L +      CI +     G       +                         + E   
Sbjct: 119 QLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVEATS 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L         VR  + V+T I   H+      E+    K  +F GL + G   LN DD
Sbjct: 179 HGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEEGKAVLNLDD 238

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L  ++ A      Y  G  + A       ++    S   V  +      V     
Sbjct: 239 PSSGFLAERTRAG--VWGYGLGAREGARLWAEVREESLAGSRCLVHGRETLEVWVPFPGR 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           +++   +   LG  +    + +  +  +       GR +R               +  A 
Sbjct: 297 FNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEAGQPFLVLVDYAHTPGA- 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                    +L  +    EGR I V G   E           +   ++      V L+  
Sbjct: 356 ------FEKLLPFVRRFVEGRLIVVFGSAGE----RDRTKRPMQGRVASRWAEVVVLTDE 405

Query: 410 HVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                          A  + L     +                  +GD V+
Sbjct: 406 DPRGEDRMAILREIAAGCEGLMEGESLFMVPDRREAIGLAVGMAREGDAVL 456


>gi|312901615|ref|ZP_07760886.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
 gi|311291303|gb|EFQ69859.1| Mur ligase family, glutamate ligase domain protein [Enterococcus
           faecalis TX0470]
          Length = 306

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 16/317 (5%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           MP + +  I E+GM H  EI FL++L +P +A IT I  AH+ N      IA AK EI +
Sbjct: 1   MPDETEKLILEMGMDHAQEISFLSNLAQPEVAAITMIGEAHVENLGSRAGIAQAKMEIVD 60

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           GL K G++F+  D+   E L  K      + + +FG S+ +  Q     +  EQ+  ++ 
Sbjct: 61  GLAKDGSLFVPSDEPLLEPLVEKV----TQQVITFGFSQESQLQGIVTNEAKEQTSFKIS 116

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                M       G +   N L+ +GI            K L+     + R +  + A  
Sbjct: 117 D--TQMTFTIPVPGTYNVTNALIAIGIGRYFQLTDSEIQKGLATAELTKNRTEWLKAANG 174

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + YNANP +M   +   S++S    G+RIAVLGDM E+G  S + H  +A+ 
Sbjct: 175 AE---ILSDVYNANPTAMGLVLDSFSKMSKV--GKRIAVLGDMLELGPDSAAMHQAMAQH 229

Query: 396 LSLYNISHVWLSGFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           L+   I  V+L G  +  L D L       +IH    E  + L   ++  L   D+VV+K
Sbjct: 230 LAPDAIEEVFLYGSEMAYLADKLQETYASANIHSFKKEEKNELIEAVKKVLQPEDMVVLK 289

Query: 451 SSNSCGFYRLINLLLEE 467
            SN  G   +I+ LLE+
Sbjct: 290 GSNGMGLREVIDALLEK 306


>gi|331011573|gb|EGH91629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 487

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKG 455


>gi|304386668|ref|ZP_07368950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
 gi|304339253|gb|EFM05331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria meningitidis ATCC 13091]
          Length = 492

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|313897392|ref|ZP_07830935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312957762|gb|EFR39387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 486

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/456 (16%), Positives = 151/456 (33%), Gaps = 40/456 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P+  + G+ IDSR     + +F ++G  +DGH+FI   ++KG   +V +  +      
Sbjct: 9   NAPEIEIAGLCIDSRCAKANDMYFCMEGMVHDGHEFIDDVIEKGVKCIVHSKPVDDM--K 66

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
             +    V++V   LN++A         K  +  +TG+ GK+T   ++    S       
Sbjct: 67  KGVAYIQVENVNRTLNRVASMFYGHPSRKMKVFGVTGTNGKSTITSIIRDVYSHFAPCGY 126

Query: 139 -------------CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                                  +     +  V+       L +S  G        V   
Sbjct: 127 IGTISISYGEVTLPPSLTTPDAVLIHKTMKDMVEHGMQAVALEVSSHGLELGRVQSVDFD 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV + +   HL     IE    AK ++F  L+K G   LN DD++ + L   + A  + 
Sbjct: 187 VAVFSNLTYDHLDFHGTIEHYFEAKKKLFTNLKKEGVAVLNADDAYVDQLADATEASVV- 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G   +A +Q    +     S   +    +  EV  + +  +   N+L  +  ++ 
Sbjct: 246 ---TYGIDNHATYQAENIRIEKTGSRFTLVHGTERYEVSTNLVALYNIYNLLGAVAAMAE 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               ++  +  L      EGR +R                +   P  M+        I+ 
Sbjct: 303 SGIPIEQQLPYLHDIRQIEGRMERIDEGQLFNVIVD----FAHTPDGMEKVFEYAKDIT- 357

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420
                 IAV G          +    +   ++      + L+           + + +  
Sbjct: 358 EDGHSIIAVFGSAG----KRDTKKRRVFGEIASRYCDSIILTEDDPRDEDPREIANEIKS 413

Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            I   +  +             S    D V++  K 
Sbjct: 414 GISDTNNIFIADRYAAIRQAIESANVKDTVLILGKG 449


>gi|308388616|gb|ADO30936.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           alpha710]
 gi|325130840|gb|EGC53573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis OX99.30304]
          Length = 492

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTLWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|332299373|ref|YP_004441294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176436|gb|AEE12126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 168/458 (36%), Gaps = 47/458 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            Q  V  I  DSR ++    F A++G H DG D+I  A+  G  ++V       S     
Sbjct: 30  AQCQVTSIEQDSRRVSEGCIFVALRGVHVDGADYIPKALAAGCRIIVTELPRPESASDE- 88

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    V D   A+  LA     R   + TI+ +TG+ GKTTT  +     S +    A  
Sbjct: 89  VVWLTVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWSWLGMRAALF 148

Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            +    IG                  + R  VD       + +S    ++   + +   +
Sbjct: 149 STVCIRIGDKEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFAL 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+ T +   HL     ++   +AK  +F+ L       +N DD    ++     A     
Sbjct: 209 ALFTNLTRDHLDYHGTMQAYIAAKKLLFDHLTPDAYALVNADDRNGSVMVQNCAA----H 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           ++++    +AD+  +   Q  + S + +  +    EV    +G + A N+    G+  +L
Sbjct: 265 LHTYAMRSHADYMAQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLL 320

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+D ++    +   +   G+    A  +G+  ++D ++  +        ++L  +S  
Sbjct: 321 LPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSEL 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDA 417
              +   V+G     G             ++     H++L+  +  +         + + 
Sbjct: 376 NASQVYVVVGA----GGDRDMGKRPEMGRIAYNMCDHLYLTSDNPRSEDPQTIIDQMLEG 431

Query: 418 LPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451
           +P++                   ++   GD+VV+  K 
Sbjct: 432 IPQAERDEVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469


>gi|319937479|ref|ZP_08011884.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
 gi|319807319|gb|EFW03928.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Coprobacillus sp. 29_1]
          Length = 485

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/455 (19%), Positives = 161/455 (35%), Gaps = 42/455 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            +  V  I  DSR +     FF + G   DGH +I  AV +GA  +V +  +        
Sbjct: 6   EEFKVVSIHSDSRYVGKDSIFFCVDGLSVDGHKYIEDAVFQGAKCIVYSKPLAYKHR--G 63

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    V++VL  LN++A         K T+I +TGS GKT    M+   LS   K     
Sbjct: 64  VLYIKVNNVLDELNRVADVFYDHPSYKMTMIGVTGSSGKTVVALMIKEVLSHYLKMGYIG 123

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIA 187
            +   + GV         +  F                 L +S  G        V   IA
Sbjct: 124 TNNIEYAGVIEQCPYTTPETIFMQRHLNDMVKRDVKGVTLEVSSHGLALKRVDGVHFDIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E + ++KA++F  +++ G   LN D+  F  L   S       +
Sbjct: 184 IFTNVYEEHLDFHGTMEHLMASKAKLFTLIDEKGYAILNTDEVRFYNLVKDSIR---CHL 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G    A    R  +   + S  ++Q+      V    +G     N+L  +  +  L 
Sbjct: 241 LTYGIEHKAHVMARNIQLFIDHSEFDLQIHDDLRHVSVPVLGRFNISNVLAVITSMLALE 300

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  ++++      +GR +                    +  S +         S   
Sbjct: 301 MPMDQVLESVGYIRGVDGRMELLEHPYPFTVIVDYC----QHAKSFEKVFQFAK--SVQT 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
            GR IAV G     G+ + +    + ++ + Y  + V L+               +++ L
Sbjct: 355 NGRIIAVFGAP---GKKNYNKREKIGKLANQY-CNQVILTAEDNRDEDIHDICLDIQEYL 410

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + + V   E               GD++++  K 
Sbjct: 411 EKPVSVII-EDRRIAIEQAIEIANHGDIILILGKG 444


>gi|241760213|ref|ZP_04758309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
 gi|241319324|gb|EER55789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria flavescens
           SK114]
          Length = 492

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL+           +Y +G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD  +  +   S+      Q      +     +G   AQN+   + ++      ++  ++
Sbjct: 269 ADICITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P        V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQSAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP      Y E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPEYVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAATNDIILIAGKG 464


>gi|225574494|ref|ZP_03783104.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038281|gb|EEG48527.1| hypothetical protein RUMHYD_02571 [Blautia hydrogenotrophica DSM
           10507]
          Length = 485

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 144/477 (30%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++           V  +  DSR +     F  I+G   DGH F+   V+KG
Sbjct: 1   MKLTALLEDLEYTCCQGDENAEVTDVVYDSRKVQKGSLFLCIRGAVVDGHTFVPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           AG++VV   + A      + V  V D   A+  ++ A       +   I +TG+ GKTTT
Sbjct: 61  AGVLVVEEKVEAPEH---VTVILVKDTRYAMACISAAYFGHPARRLKTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L +       IG+    +G              V     +   D       + 
Sbjct: 118 TYMVKSILENAGYRVGLIGTIEAIVGDKVIPAVNTTPESYVIQKYFKEMADAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +   T        + T I P H+                 E             
Sbjct: 178 VSSQALMLHRTAGFEFDFGIFTNIEPDHIGP-----NEHRDFQHYLECKSMLLRQCKVGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEVVH 285
            +  +    +        + +FG S+ AD +    K  S + W           + +V  
Sbjct: 233 VNRDDKHFEQIIKGHTCALETFGFSEKADLRAEDAKLVSGKGWLGIDYQVRGMMNFQVEI 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  + I           + AL           R         FTL+ + 
Sbjct: 293 DIPGKFSIYNSLTAIAICRHFKVSEKDIVNALR----VAKVKGRIEMIKVSDEFTLMID- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  ++++ ++ L +  PH       ++      G  S+    ++ E         + 
Sbjct: 348 YAHNAMALESLLTTLREYHPHR------LVCLFGCGGNRSKLRRYEMGETSGRLADLTII 401

Query: 406 LSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S         A+ D +   I                  +       GD++++  K 
Sbjct: 402 TSDNPRYEKPQAIIDDIKVGISKTDGKYIEIADRKEAIAYAIHHGEPGDIIILAGKG 458


>gi|24375709|ref|NP_719752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
 gi|30316030|sp|Q8E9P3|MURE_SHEON RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|24350643|gb|AAN57196.1|AE015855_7 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella oneidensis MR-1]
          Length = 491

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 147/477 (30%), Gaps = 47/477 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL            +     +++DSR+I   + F A+ G   DG  FI  A+ +GA 
Sbjct: 3   LRELL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGAT 58

Query: 67  LVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGSVGK 119
            V+V+TD     G + +          ++   ++ +A       +     I+ ITG+ GK
Sbjct: 59  AVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGK 118

Query: 120 TTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           T+T ++    +              + +       G+        +       +      
Sbjct: 119 TSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTC 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     V   +AV T +   HL     +E  A+AK  +F        +  
Sbjct: 179 AMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRHGLLN 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D      L    +       +S    K A F  +  +   +     +      +++  
Sbjct: 239 LDDPIGGAWLAELKNVPAKIWGFSIEAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDISS 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  L  + +   D+      +    P  GR +R+  A N         +
Sbjct: 299 PLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTADNITLVVDYAHT 358

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +A           L+ +  H  G    V G     G         L    +      + 
Sbjct: 359 PDA-------IEQALNALRRHCAGVLWCVFG----CGGDRDKGKRPLMGQAAEQFADRIM 407

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   L                  + +    GDV+++  K 
Sbjct: 408 VTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKG 464


>gi|257468653|ref|ZP_05632747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062910|ref|ZP_07927395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688586|gb|EFS25421.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium ulcerans ATCC 49185]
          Length = 483

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/454 (15%), Positives = 152/454 (33%), Gaps = 46/454 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +    GI  DSR I   + F A++G   DGH++I  AV+ GA  V+V+  + A+     +
Sbjct: 19  EEEYTGIEYDSRKIKTGDIFVALEGAVSDGHNYIEQAVKNGAKCVLVSKKVEAAFP---V 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               + D+   L  LA       +  +  I  +     T     I         A IG+ 
Sbjct: 76  KYIWIKDLRKKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSNKTARIGTV 135

Query: 144 NNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              IG                V +    +   +++ + E+  SH  ++  +  ++   ++
Sbjct: 136 EYKIGDEVIEAPNTTPESLDIVKMCKRSVEKGMEYLVMEV-SSHALDLGRV-DMLEFDVS 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E+   AK ++F  ++K        +                   
Sbjct: 194 MFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG----KRLSSEFGG 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S+G       + R  +   +   +E+ +   S       +G +   N+L  + I  +L 
Sbjct: 250 ISYGMHNEGRVRGRIVEFHGDGQEVELHIDAFSTRTKLAILGRYNVYNVLGAISIALLLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            + +  ++ +       GR +   C  N         + +A         ++L  I+   
Sbjct: 310 IEKEIVLERIKELKGAPGRYELVNCGQNFTVIVDYSHTSDA-------LENILKSINELK 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI 422
           +G+ I V G     G    +    +   ++        ++  +        + + +   +
Sbjct: 363 KGKVITVFG----CGGDRDASKRPVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGM 418

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   E  D           + D++++  K 
Sbjct: 419 KGKNHIVEEDRDHAISKAVELAEEKDIILIAGKG 452


>gi|197302411|ref|ZP_03167467.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
 gi|197298532|gb|EDY33076.1| hypothetical protein RUMLAC_01139 [Ruminococcus lactaris ATCC
           29176]
          Length = 496

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 149/481 (30%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  +  DSR +     F  I G   DGH +     +KG
Sbjct: 1   MRLDTLLERLEYKVVQGSAETEVTTLINDSRKVENGSVFVCISGAVSDGHKYAAEVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+        + V  V+D   AL  ++ A       K  I+ ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVEV---PADVTVIKVEDTRYALALMSAAYFGYPAEKLKIVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         IG+    IG                       +    D  + E
Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGEKKIPAANTTPESYTIHQYFAEMVKEGCDCVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S  G +   T  +   I + T +   H+        E+    K  +           
Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLL-------FKQC 228

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281
                +  +       +     + +FG S+ AD +    +  S   +             
Sbjct: 229 RLGIANVDDKYFEDVFSGATCKVETFGFSEKADLRAENVQLVSRPGYLGVAYHVAGVMDF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L  + +        +    AL           R         FTL
Sbjct: 289 DVEIDIPGTFSVYNSLTAISVCRHFEVPAELIKDALKKAK----VKGRIEMVKVSDDFTL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  N  S+++ ++ L +  P        ++      G  S+    ++ EV      
Sbjct: 345 MID-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSRDRRFEMGEVSGRLAD 397

Query: 402 SHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450
             +  S         A+ D +   I   +  Y E         +  S    GDV+V+  K
Sbjct: 398 LTIITSDNPRFEEPQAIIDDIKTGIGRTNGKYVEICDRKEAIKYAISHGEVGDVIVLAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|325134881|gb|EGC57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M13399]
          Length = 492

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +             + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|254673386|emb|CBA08679.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha275]
          Length = 492

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|75675239|ref|YP_317660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
 gi|74420109|gb|ABA04308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter winogradskyi Nb-255]
          Length = 485

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 141/460 (30%), Gaps = 36/460 (7%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
                    +  V G++ DSR++ P + FFA+ G   DG  FI  A+  GA  V      
Sbjct: 10  DATMDAPAGELAVTGLAADSRAVKPGDLFFALAGSKTDGARFIDAAIASGAVAV----AG 65

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             +     +P     +   AL   A     R  ATI A+TG+ GKT+           + 
Sbjct: 66  DHAPARGRVPFIATPNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLG 125

Query: 135 K--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTH 180
                                        +  ++D    E      L  S  G  ++   
Sbjct: 126 YLSASIGTVGVVAPSRAVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRVD 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKS 239
            VR   A  T ++  H+     +      K  +F   +E  G   +  D    + +   +
Sbjct: 186 GVRVRAAGFTNLSRDHMDYHPTVAHYLETKLRLFRDLVESDGIAVICADHDCSDTVIEAA 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +  +    +   A   +R  +   +     V L+    E V         Q     
Sbjct: 246 GARNVPVMRVGRRGDGARMGIRLVEAAIDGFAQRVTLEHAGRERVIRLPLVGEFQIENAL 305

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    ++    D      ++ H +  RG+  R     G    +D ++  +  +       
Sbjct: 306 VSAGLVIGTGGDVDQAFAALEHLEGARGRIERIGERNGAQVFVDYAHKPDALA-----KA 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L  + P+ + + + V G     G    +    L   ++  N   V ++  +  +      
Sbjct: 361 LQALRPYAKRKLVVVFGA----GGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAI 416

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               L  +                 + L  GD +++  K 
Sbjct: 417 RAAILAAAPGAREIGDRAEAIGTAIAGLQSGDALLIAGKG 456


>gi|325848850|ref|ZP_08170360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480494|gb|EGC83556.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 476

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/468 (16%), Positives = 149/468 (31%), Gaps = 51/468 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L+ I   S  I     + GIS DSR I     F A KG  +DGH +I  A++ G
Sbjct: 1   MKIEKILKEISYISKNIQNDKEIIGISSDSRQIKENYIFLANKGYEFDGHKYIDSAIKNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D +       I    V D   AL K++            +I +TG+ GKTTT
Sbjct: 61  ANTIIYTNDDINF--ESGINYIKVKDQRLALAKISNLLSNYPSKSMRMIGVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGIFE---------LG 168
             ++   L+ +    A IG+         +    T   +    +  I           + 
Sbjct: 119 ANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILIKAKKENIKNAVME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G      + +     V T ++  H+     ++    AK  +    +K      +  
Sbjct: 179 TSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMILLNNSKKQVVNLDDDY 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + +   +  + I     +              +  ++  + ++     ++   +  
Sbjct: 239 GKRAKEIFKDALTISINEDSKY------------RAKNIKRVDLGLEFTVNGVKFHLNRF 286

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G +   N L  + I + L   ++   KAL  F   + R +     L          +  A
Sbjct: 287 GQYDIYNSLCAIAIANDLGYKLEEISKALEDFTGVKSRFEFIENKLGINIVVDFAHTPEA 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    ++   +    +    AV G     G+ +      + ++ + Y +  V  + 
Sbjct: 347 -------FENLFKDLPKDKK--IYAVYGI---NGDRTYDIRKAVGKISAKYGVFSVITTD 394

Query: 409 F--------HVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVV 447
                        +K+ +  +       +       +  S    GD V
Sbjct: 395 DPKFDTFENISQQIKEGVDENKGECIIIKDRKEAIKYGISHAKKGDFV 442


>gi|89898439|ref|YP_515549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
 gi|123483157|sp|Q253Y4|MURE_CHLFF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|89331811|dbj|BAE81404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Chlamydophila felis Fe/C-56]
          Length = 485

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 155/474 (32%), Gaps = 44/474 (9%)

Query: 5   WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL    I     G +    V  ++ DSR+I   + F A KG   DG+DF   AV+
Sbjct: 1   MNLKELLHNIDIDAKVYGKISPIEVRNLTKDSRNIGFGDIFIANKGKRCDGNDFASLAVE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKT 120
            GA  VV +         LS+      ++     +LA            ++ ITG+ GKT
Sbjct: 61  NGAIAVVSS----IYNPFLSVVQIISPNLSLLEAQLAAKYYNYPSRKLCVVGITGTNGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM----------- 169
           T   ++     +  K    IG+  + +G               + +              
Sbjct: 117 TVSHLIKFLFDACDKPSGLIGTIEHILGNNRIQDGFTTPESCLLQKYLAEMVKSNLTAAV 176

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S +G +      V   + V+T +   HL      EE   AK ++F  L  +G   +N
Sbjct: 177 IETSSIGLVLDRLANVEFDVGVLTNVTLDHLDFHDSFEEYIKAKLQLFAQLSDSGLAVVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    +     + A+ +    ++G  + AD++    +     +  ++  +G+       
Sbjct: 237 NDLPQAKQFLEATRAVPV----TYGIEQLADYRASNLRFSPFGADFDLIHKGEIFPCHSP 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG +   N+L  + +           +  +S+    +    R     +      ID ++
Sbjct: 293 LIGQYNVYNVLAAIAVTHQRLNCDLQQL--VSLVASVKSPRGRLEPIQSGPCPIYIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  ++      L  + P   G+ I V G     G         +   +       V  
Sbjct: 351 TPD--ALDNVCQTLRTLLP-SGGKLIVVFG----CGGDRDRSKRKIMAQVVEKYGFAVVT 403

Query: 407 S----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           S    G     + + +                    +  S   D D+V+V  K 
Sbjct: 404 SDNPRGEDPETIVNEICSGFVKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 457


>gi|86358455|ref|YP_470347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli CFN 42]
 gi|86282557|gb|ABC91620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CFN 42]
          Length = 506

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/460 (16%), Positives = 144/460 (31%), Gaps = 38/460 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR++ P  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 34  LEAQLEGPAGLLDISGLSSDSRNVEPGNAFVAVTGTKADGAGFIADAAGRGAAVAIASQP 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + A+     IPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  VDAA-----IPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179
               A IG+             +       + +              +  S  G  +   
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+   A  T +   H+     +E   +AK  +F+ L   G   + + D  +     ++
Sbjct: 209 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSPQAVQA 268

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A     + + G+  +     R      +Q+             +           +   
Sbjct: 269 AADAGHDVRTVGRKGDYLTLKRVEHFRHKQTAEIHIGDEIFEVDI----PLAGDFQVANA 324

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +       A++      G   R     +     L    Y   P ++    +V
Sbjct: 325 LVAAGLAMSTGVEPKAAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
           L+ + P   GR + V G     G         +   ++      V ++  +         
Sbjct: 382 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 437

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 438 RAEIMTAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477


>gi|158320407|ref|YP_001512914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|167017292|sp|A8MH31|MURE_ALKOO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|158140606|gb|ABW18918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 487

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 153/475 (32%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ IQ   I       +  I  DSR +  +  F  I+G    G  +I  A+Q+GA 
Sbjct: 3   LQELLKGIQVEKIIGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQRGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++   ++             V++   AL  +A            ++ +TG+ GKT+   
Sbjct: 63  AILSEKEIAIE----GTTTIKVENSRKALAAVASRFYKFPTNTLKLVGVTGTNGKTSITY 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELG 168
           M+   L         IG+ +N IG                       +   VD  + E+ 
Sbjct: 119 MVKSILGYYNINVGLIGTISNWIGNKEIEAVRTTPESLELQKILNEMVEQKVDTCVMEV- 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH  E+  +    +  + + T + P HL     ++   +AK ++F        I ++  
Sbjct: 178 SSHALELGRV-DHTKFTMGIFTNLTPEHLDFHEDMDHYRNAKKKLFYKTTLCNIINVDDI 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 + A+        + +FG ++ AD      K   +    ++ +   S E      
Sbjct: 237 H---GKMIAEELKEEQIPLITFGMNQQADVYATDLKINLKGVSFQLHMGQDSKEFHVKIP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N + ++ I  IL   ++    AL       GR +                 Y  
Sbjct: 294 GLFTVYNAMPSILICYILGLSLEEISIALEAMKGVPGRFEVVEEIQRNSVIID----YAH 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P +++  +    + +P      I V G     G         +   +S     +  ++ 
Sbjct: 350 TPDALENILISTRKFAPKR---IITVFG----CGGDRDKTKRRIMGEISGKYSDYSIITS 402

Query: 409 FHVL-----ALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        + + +   I                  +      + D++++  K 
Sbjct: 403 DNPRTEEPLKIIEMIEDGIKQVTDQYKIMIDRRCAIEYAMKIAEEKDIIILAGKG 457


>gi|126650748|ref|ZP_01722964.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592413|gb|EAZ86431.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 744

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 15/365 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    IIAITGS GKTTTK  +   LS     +     +N           +       +
Sbjct: 383 KKNLPIIAITGSAGKTTTKAFVGSILSKQWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 442

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+  G+++ G +
Sbjct: 443 LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 502

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD     L+ +        + + G   +AD++    +        +++L G+ +E+
Sbjct: 503 ILNKDDDNSRFLETQQFKGK---MLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 559

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +   L          L+   P             +   T+ID
Sbjct: 560 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPPRRLTIYN----LRDDITVID 615

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++ +++P  ++AAI VL+ I+   +   +A++G M E+G L +  +  + E +    I  
Sbjct: 616 DTVHSHPQGVRAAIDVLTNIAKKRK---VAIIGQMRELGVLREEEYRKVGEYIYEEGIDE 672

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               GF    + +A          VH+    D L   +   +   D ++VK ++    + 
Sbjct: 673 FITYGFRTDEMSNAAIEMGMDPSRVHHFINKDALHALLDKLIKPHDTILVKGASKTNMFE 732

Query: 460 LINLL 464
            +  L
Sbjct: 733 TVKYL 737


>gi|66047334|ref|YP_237175.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae B728a]
 gi|63258041|gb|AAY39137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 487

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V         + 
Sbjct: 11  HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVAGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  + G L+ +A            ++ +TG+ GKT+  +++  AL  + +  
Sbjct: 71  ITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L A      
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSDLKCRVINLDDDFGRELAAVKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +KAL       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 455


>gi|302812929|ref|XP_002988151.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
 gi|300144257|gb|EFJ10943.1| hypothetical protein SELMODRAFT_127176 [Selaginella moellendorffii]
          Length = 507

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 157/477 (32%), Gaps = 43/477 (9%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   +         ++GI  DSR +   + F    G   DGH F+  A +
Sbjct: 1   MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA ++V   ++   IG     V  V D    L+ LA A   R      ++ ITG+ GKT
Sbjct: 61  QGAVVIVATKEV--EIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165
           TT  +L     S+            +       +     P       L    V     + 
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +     +   +AV T +   H+      +    AK ++F  +        
Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +          S       + +FG  K+AD      +    ++ + V+    ++E+  
Sbjct: 239 VVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISS 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N+L  + +   + A ++  ++ +       GR +       Q F  ++D +
Sbjct: 299 GLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVD--EEQPFAVIVDYA 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +  S      +L  +   G  R I V+G     G         +   ++        
Sbjct: 357 HTPDALS-----RLLDTVRECGPRRIITVVG----CGGDRDRGKRPVMAKIAAAKSEVCI 407

Query: 406 LSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +           +    +     V   +          +   +GD VV+  K 
Sbjct: 408 FTSDNPRSEDPRKFERSYYPPIWNGNRVFVYDLRKIAVRAAVAMGEEGDAVVIAGKG 464


>gi|251788245|ref|YP_003002966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya zeae Ech1591]
 gi|247536866|gb|ACT05487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya zeae Ech1591]
          Length = 494

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 148/472 (31%), Gaps = 42/472 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVKDAPERALREMTLDSRVAAAGDLFVAIVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             D     G+L     +PV  +DD+   L+ LA     +      ++ +TG+ GKTTT +
Sbjct: 66  QADEATPDGTLTEMHGVPVIYLDDLNLRLSALAGRFYRQPSSSLQLVGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170
           +L     ++ K +       N  +G  +                            + +S
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVVPSENTTGSAVDVQQILSQLVAQGANFAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    AV T ++  HL     +    +AK  +F   +    I    D+ 
Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKIINADDEV 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L     A+ +        ++    +  +         +          +    +G 
Sbjct: 246 GRRWLSRLPDAVAVSVTGEIDSARARWLKATRIDYHDSGFTVTFDSSWGGGAINSRLMGE 305

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L  +  L   ++  ++A S   P  GR + +              + +A  
Sbjct: 306 FNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLADGRPTVVVDYAHTPDA-- 363

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L+    H  G    V G     G         L   ++      V ++  +
Sbjct: 364 -----LEKALAAARLHCRGTLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L  +  V                    DVV+V  K 
Sbjct: 415 PRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|330685887|gb|EGG97516.1| Mur ligase middle domain protein [Staphylococcus epidermidis
           VCU121]
          Length = 686

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 102/480 (21%), Positives = 192/480 (40%), Gaps = 29/480 (6%)

Query: 4   LWTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSI-----APQEAFFAIK--------G 48
           + T  D+   I G    I       +N        I     +   A+F+ K        G
Sbjct: 1   MLTIKDISNIIGGTLYDIENNIDREINDFET----IYGFVKSKHTAYFSPKKDTWWRELG 56

Query: 49  PHYD---GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
              +   G+D I  +     GL++  T          IP   V D + A   LA+  R +
Sbjct: 57  RSKNAPEGNDLIDKSNPN-VGLIITET--YVEGLEYKIPQLIVQDSIKAFKTLAIYIRNQ 113

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  +IAITGS+GK++T+ +    L           +          L ++  +  F + 
Sbjct: 114 YKNPVIAITGSMGKSSTRMLTASLLKDYPIQENRGNNNIRAAIYANML-KLIKNPYFAVI 172

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E  ++ +      +  ++P IAVIT I  AH S F+ I+EIA  KA IF GL + G   +
Sbjct: 173 ETSLNAINHRENTSLYLKPDIAVITGIGAAHFSTFNSIKEIAELKARIFAGLSENGVAII 232

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D  F + L  ++H    + + ++    + D  L+  +    +  ++++++       +
Sbjct: 233 NGDTMFADYLIDQAHQY-TQNVQTYSIGNSLDSTLKPAQITYLKGAIKIEIEVNGERCNY 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               +           I+ +   ++    + L  F P     K           TLID++
Sbjct: 292 QINTFSDGMISNTLAAILILKNLNIPVKAEYLYNFEPFSKILKMKEIQTPTHKTTLIDDT 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NA+  +M  AI      +   +G +I  LG + ++G  S+  H +L   LS  N  ++ 
Sbjct: 352 HNASLPAMINAIKAFDTQTEFFKGNKIIALGKINDLGHKSRDTHQELIPYLSNSNADYIL 411

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLL 464
                +  + + + ++ H+ Y    + +   ++    +  VV++KSS+    F  +   L
Sbjct: 412 CLDDDLRPVVNKI-KNKHITYYPNKELMINDLKYLCNEDSVVLLKSSSGGTQFPEVAKTL 470


>gi|225569237|ref|ZP_03778262.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
 gi|225162036|gb|EEG74655.1| hypothetical protein CLOHYLEM_05319 [Clostridium hylemonae DSM
           15053]
          Length = 490

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 90/476 (18%), Positives = 165/476 (34%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+ ++   +    +  V  ++ DSR + P  AF  I G   DGH ++    +KG
Sbjct: 1   MRLTDLLERLEYEVVQGSEKAEVTELTNDSRKVVPGSAFVCISGAVSDGHAYVKEVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V   + A      + V  VDD   AL  ++ A       +  +I ITG+ GKTTT
Sbjct: 61  AKAVIVEKQVEA---PDGVTVIHVDDTRYALALMSAAYFGYPAEQLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L  +      IG+    IG                    +  VD       + 
Sbjct: 118 TYMVKSILEGVGHKVGLIGTIETLIGGKAIPASNTTPESFTIHKYFKEMVDAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +        T    
Sbjct: 178 VSSQGLMLHRTAGIEFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGIL-------FTQCRL 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +               +FG S+ AD +    +  S   ++ V+     +     
Sbjct: 231 GIANVDDRWFEDVFRNATCRTETFGFSEKADLRATDVEHISRPGYLGVKYHVSGLMDFDV 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I      ++  +L  +++       A +        + +G+     ++  F  +ID ++
Sbjct: 291 EIDIPGEFSVYNSLTAIAVCRHFDVPAEEIKKALKVAKVKGRIEMVKVSDDFTLMIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA      +  S+L+ +  +  GR + V G     G  S++   ++ EV        V  
Sbjct: 351 NA-----MSLESLLATLRDYDPGRLVTVFG---CGGNRSRTRRFEMGEVSGKLADFTVIT 402

Query: 407 SG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S         A+ D +   I      Y+          +   +   GDV+++  K 
Sbjct: 403 SDNPRFEEPQAIIDDIITGIERTDGKYTAICDRKEAIRYAIENGRPGDVIILAGKG 458


>gi|325205484|gb|ADZ00937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M04-240196]
          Length = 492

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCHTRLLGRFNAQNLAACVALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|319639031|ref|ZP_07993789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317399935|gb|EFV80598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 492

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/447 (18%), Positives = 144/447 (32%), Gaps = 39/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDGYGAELAGRLKKDCLDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITNFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLA 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHY 426
           G     G         L    ++     V ++  +            +  A+P    V  
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEV 439

Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +        D++++  K 
Sbjct: 440 --DRAVAIRYAVEQAAANDIILIAGKG 464


>gi|163784268|ref|ZP_02179185.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880457|gb|EDP74044.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 237

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/208 (34%), Positives = 99/208 (47%), Gaps = 8/208 (3%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H +           +    VN   IDSR     + F  +KG + DGH FI    +KG
Sbjct: 1   MNLHQIANITGAK-FKNLSNKKVNRFIIDSRQAKKGDFFVPLKGNNVDGHQFIDEVFKKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A     + ++  S       V  VDD L AL  +A   +       I ITG+ GKTTTKE
Sbjct: 60  AFGSFSSKNIEKSN------VLVVDDTLKALTDIAKYKKDFIDIK-IGITGTAGKTTTKE 112

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L+  LS     Y   G+YNN IG+P+TLA +  +  +G+FELG S  G+I +LT ++  
Sbjct: 113 ILSYLLSYFYPVYYTKGNYNNQIGLPITLANIDKNYRYGVFELGASKKGDISYLTDILNQ 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +IAVIT +   H     G E +   K  
Sbjct: 173 NIAVITNVGYGHTEGLGGFEGVLQEKKN 200


>gi|16332016|ref|NP_442744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechocystis sp. PCC 6803]
 gi|3122415|sp|Q55469|MURE_SYNY3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|1001328|dbj|BAA10815.1| UDP-MurNac-tripeptide synthetase [Synechocystis sp. PCC 6803]
          Length = 505

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 136/455 (29%), Gaps = 43/455 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA-GLVVVNTDMVASIGSLSIPV 85
           V G+S +S +  P   F  + G   DG +F   A++ GA   VV    +          V
Sbjct: 35  VTGLSTNSHACPPGTLFIGMPGTRVDGGEFWSGALEAGAIAAVVSEKALQKFPPQNGECV 94

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK--------- 134
             V D++     LA A          ++ +TG+ GKTTT  ++   L+  +         
Sbjct: 95  IAVPDLVPVCAGLAAAFYQHPAQTLQLVGVTGTNGKTTTSHLIEYFLNQQQRSSALLGTL 154

Query: 135 KTYACIGSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            T             P            +     + + E+  SH      +        A
Sbjct: 155 YTRWPGYQKTATHTTPFATDLQKQLAEALQAGNQYAVMEV-SSHALAQGRVLQCG-FACA 212

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +E   +AKA +F+     G   +N DD + + L  +      +  
Sbjct: 213 VFTNLTQDHLDFHGTMENYFAAKALLFKESYLQGRAVINQDDPYGQRLIDRL--PLDQVY 270

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF  +                      +   +G     N+L  +     L 
Sbjct: 271 TYSVNDSTADFYTKDLDYQPTGVKGTFVTPQGEFPFLSPLVGQFNLANVLAAIASGLHLG 330

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D    +K L  F    GR ++ +   +Q    ++D ++  +        + L    P  
Sbjct: 331 LDPAAMVKDLLDFPGVPGRMEQVQIRPDQDISVMVDYAHTPDSLE-----NALKAARPFI 385

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
            GR I + G     G         L   ++        ++  +            +   +
Sbjct: 386 PGRLICIFG----CGGDRDRTKRPLMGNIAAQLADLAVVTSDNPRTEDPEQILADVVQGI 441

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              I                     GD V++  K 
Sbjct: 442 SLDIEPWIIGDRATAIHKAIREAKPGDGVLIAGKG 476


>gi|269792478|ref|YP_003317382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100113|gb|ACZ19100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 512

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 142/490 (28%), Gaps = 58/490 (11%)

Query: 5   WTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
              ++LL  +QG  +       G      VN +  DSRS++P + F  + G   DGH F 
Sbjct: 1   MKLNNLLDRLQGEPLLTEVISSGQAMDVEVNRVVFDSRSVSPGDIFTCVPGGRTDGHGFA 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             AV +GA  + V   +      + +P     D    + +LA            +I ITG
Sbjct: 61  RDAVDRGAVALCVARPLAE----VQVPQLVSRDPRAFMGRLAATLYGWPARDLKMIGITG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDV 160
           + GKTT+  M+   L +       +G+     G               V   L RM  + 
Sbjct: 117 TNGKTTSTYMMGSILEAQGTRTGLLGTVFYCDGVTFEHADRTTPEGADVQWFLKRMRDNS 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEK 219
                 +  S  G  +           + T + P HL      +    AK       +++
Sbjct: 177 CQACV-MEASSHGLKQGRIEGCEFDGGLFTNLTPEHLDFHLTEDAYFDAKRLLFNRYMKE 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 N  D     L  +                  +       +  +   M +++   
Sbjct: 236 GWVGASNASDPRGAALLMEHPDRMHGYRVIGSNESPVEGCWCGRIRSYDLEGMTLEVYDP 295

Query: 280 -----SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  EV    IG +  +N +  + +   +    D  ++ L+      GR + YR   
Sbjct: 296 RGRLAFREVSLPLIGTYNGENAMGVIALSMGMGIGGDAVVRGLASMPQVPGRLETYRFPN 355

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                     + +           VL  +     G+   V G     GE + S    L  
Sbjct: 356 RVVGVIDYAHTPDG-------LEKVLGALRGVTVGKLWVVFGH---GGERTGSHRPKLGA 405

Query: 395 VLSLYNISHVWLSG----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSL 441
           V +      V            ++   +                          +   + 
Sbjct: 406 VAASLADRAVVTMDNPRSEDPASIAAQIVSGISHARAREGFQHWVILDRGEAIRYALDNA 465

Query: 442 VDGDVVVVKS 451
             GDVV +  
Sbjct: 466 EIGDVVAITG 475


>gi|254480031|ref|ZP_05093279.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
 gi|214039593|gb|EEB80252.1| UDP-N-acetylmuramyl-tripeptide synthetase subfamily protein [marine
           gamma proteobacterium HTCC2148]
          Length = 488

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/455 (16%), Positives = 151/455 (33%), Gaps = 38/455 (8%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +  ++G+ +DSR +   + F A+ G  +DG  FI  AV  GA  +V    +   + +L
Sbjct: 17  SAETMISGVQLDSRRVKIGDLFLAVPGEIHDGRQFIEQAVASGAVAIVAEPPVAGFVEAL 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            +P+  + ++      +A            +I +TG+ GKTTT  ++   +    K+   
Sbjct: 77  QVPLVEMPELQQESGFIASRFHKEPSVSLHMIGVTGTNGKTTTSRLVAQLIRLQGKSCGV 136

Query: 140 I------------GSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPH 185
           I               N          ++    D G++   M  S    ++   + V   
Sbjct: 137 IGTLGASLNEDVAQGGNTTPDAVSLQQQLADWRDQGVYAASMEVSSHAMVQGRVNGVGFE 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T ++  HL     +E    AK  +F        +    D+    +        G++
Sbjct: 197 TAVFTNLSHDHLDYHGSMEAYGRAKLALFANEGLKHALVNLDDEFGARVC--DVVEPGVQ 254

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I     +  AD  + +    + +    ++    + E V    G     N+   +  V++
Sbjct: 255 LITYSVSNPQADVFVEQADFSAGRVTGVLRTPWGTGEFVSPLPGDFNLANLAAAVSAVTL 314

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +   +K +S   P  GR +     L          + +A          VL+ +  
Sbjct: 315 AGEPLAEVLKNVSRLRPVPGRMQSLSNTLGLQVIIDYAHTPDA-------LEQVLTALRL 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPR 420
           H +G+ + V G     G         +   ++      V ++     G    A+   +  
Sbjct: 368 HVDGQLVVVFG----CGGDRDREKRQVMGRVACAIADKVLVTSDNPRGEDPAAILADIEV 423

Query: 421 SIHVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
                Y              +    GD VV+  K 
Sbjct: 424 GCSGQYLLEVDRSTAIKRAVNEAGAGDCVVIAGKG 458


>gi|218768817|ref|YP_002343329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis Z2491]
 gi|21362721|sp|Q9JSZ0|MURE_NEIMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|121052825|emb|CAM09173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           Z2491]
 gi|325144953|gb|EGC67236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis M01-240013]
          Length = 492

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIIDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|304411648|ref|ZP_07393260.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|307306300|ref|ZP_07586045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
 gi|304349836|gb|EFM14242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS183]
 gi|306911173|gb|EFN41600.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           BA175]
          Length = 499

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 81/486 (16%), Positives = 150/486 (30%), Gaps = 53/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110
           GA  V+V+TD     G +                +   ++ +A            +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           I ITG+ GKT+T +++   ++S+ +K        N   G  +       D          
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D      L            +S    + A F  +  K   +     +  
Sbjct: 237 NTLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A N 
Sbjct: 297 PEDETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + +A           L+ +  H  G    V G     G         L    
Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +            +   L                  + +    GDV+
Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LLAGKG 471


>gi|121635452|ref|YP_975697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria meningitidis FAM18]
 gi|120867158|emb|CAM10925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria meningitidis
           FAM18]
          Length = 492

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +             + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANDYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|89055257|ref|YP_510708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
 gi|88864806|gb|ABD55683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Jannaschia sp. CCS1]
          Length = 490

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 152/461 (32%), Gaps = 35/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G +        V+ ++ DSR +     F A+ G    G DFI +A++ GAG ++ +    
Sbjct: 9   GLTPKSGGDVVVSDLAFDSRKVQAGTLFAALPGTRVHGGDFIQYALRMGAGAILTDRAGA 68

Query: 76  A----SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 + +    +  V+D   AL   A         T++A+TG+ GKT+          
Sbjct: 69  EIAATDLAATDAALVVVEDAADALAHAAALFFGAQPETMVAVTGTNGKTSVASFTRQIWE 128

Query: 132 SIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFL 178
           ++               +   G +     V L      +  D      +  S  G  +  
Sbjct: 129 ALGVPAVNIGTTGVEGAFEAPGIHTTPEPVTLHRVLAEMGADGVTHAAMEASSHGLDQKR 188

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              VR   A  T +   HL     +E    AK  +F GL   G + +   D    L  A+
Sbjct: 189 MDGVRLAAAAFTNLTQDHLDYHGTMEAYFEAKLRLFTGLLPDGGVAVVNLDDDHGLRVAE 248

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + +     +    +   A  ++   +       +  + QG + +V  + IG   A N+L 
Sbjct: 249 ACSTRGIEVIGVAQYAEAALKITGRRIDETGQDVLFRWQGDACQVRLNLIGAFQAMNVLT 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D +     L       GR  +     + G    +D S+  +   +     
Sbjct: 309 AAGLVIAGGEDPEDVFAVLHKMEGVRGR-MQLAARRSHGAPIYVDYSHTPDSLEV----- 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            L  + PH  GR + V G     G    +    L    +       +++          A
Sbjct: 363 ALKALRPHVLGRLVVVFGA----GGDRDTAKRPLMGNAATLWSDVAFVTDDNPRTEDPAA 418

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ A L                L     L  GD +++  K 
Sbjct: 419 IRAAVLAGCPEATVVADRAEAILRAVDMLEPGDALLIAGKG 459


>gi|261405661|ref|YP_003241902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
 gi|261282124|gb|ACX64095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus sp.
           Y412MC10]
          Length = 494

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/484 (15%), Positives = 145/484 (29%), Gaps = 55/484 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH F   A  KG
Sbjct: 1   MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHQFAAQAAGKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+  LA A   +      +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   ++        IG+     G                            +  + E
Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222
           +  SH  E   +        A+ T +   HL     +EE         + +     K  +
Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   A         + ++G  ++AD +       ++ +   V     S +
Sbjct: 234 ARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  +    +    ++    +L      +GR +              
Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDY 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +          +VL  ++   EGR + V G     G         +   ++     
Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVLTVFG----CGGDRDRTKRPIMGKIAAKYSD 402

Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449
            V+++  +            ++  L    +     +                  GDVV++
Sbjct: 403 VVFVTSDNPRTEDPELILKDIEAGLVEDGVATESYKLIVDRRKAIEKAIEMASPGDVVLI 462

Query: 450 --KS 451
             K 
Sbjct: 463 AGKG 466


>gi|260891099|ref|ZP_05902362.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
 gi|260859126|gb|EEX73626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Leptotrichia hofstadii F0254]
          Length = 509

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 145/481 (30%), Gaps = 45/481 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + + ++  ++       + GI  DSR I     F A+ G   DGHDFI  A+  GA +++
Sbjct: 4   IFEDVEYKTLKEGKSFVIKGIEYDSRKIEKDFVFVAMTGSAVDGHDFIQKAIDGGAKMII 63

Query: 70  VNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125
                D      +  +    V+ +   L  +A       + K  II ITG+ GKTT+   
Sbjct: 64  SEKNIDTGQYQSASDVTFIQVEGIRKKLGIIASNYYGYPQDKIKIIGITGTNGKTTSSFF 123

Query: 126 LTIALSSIKKTYACIGSYNNH-----IGVPLT-------LARMPVDVDFGIFELGMSHLG 173
           L   L    +         +         P +          +    D+ I E+  SH  
Sbjct: 124 LENILEKTARIGTTGNRILDKEFETVNTTPESLELIKLIDKSVKSGADYFIMEV-SSHAL 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  +++   A+ T +   HL     +E   +AK +IF  L        +   +  +
Sbjct: 183 EIGRV-DMLKFDSAIFTNLTQDHLDFHKTMENYFNAKKKIFSMLRNNKNHTGSGVINIDD 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              AK +       +     KN D  +         + M+V++  K+    +     +  
Sbjct: 242 EYGAKIYLENNAKNFISISVKNEDADIWGDILNYTNNGMKVKINLKNYLEKYGKNLKNTE 301

Query: 294 QNMLMTLGIVSILTADVDTAIKALS------VFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 + +V            A +      +    +                   +   
Sbjct: 302 NVYRFEIDLVGEYNLYNILGCIASALSLGIEMDFIVKKLETMPAVPGRFETIKNDLDVRI 361

Query: 348 ANPASMKAAI--SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
               +       +V   +    + R I + G     G              ++     + 
Sbjct: 362 VVDFAHTDDGLLNVGKTLKQITDNRVITIFGA----GGDRDHEKRPKMAQAAIKFSDFII 417

Query: 406 LSGFHVL-----ALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--K 450
           L+  +        +   + + +                +    +    L  GD +++  K
Sbjct: 418 LTSDNPRTENPTKILADIEKGLIGEKFPFNRYLIIADRERAIKYGTRMLEKGDSLLIAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|239999612|ref|ZP_04719536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268595423|ref|ZP_06129590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|268548812|gb|EEZ44230.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae 35/02]
 gi|283379449|dbj|BAI66132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
 gi|317164864|gb|ADV08405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 492

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|330877138|gb|EGH11287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 487

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T         A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455


>gi|306784930|ref|ZP_07423252.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
 gi|308330389|gb|EFP19240.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu003]
          Length = 435

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 53  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 112

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 113 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 172

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 173 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 229

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 230 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 287

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 288 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 347

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 348 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 406

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 407 VLVKASNAAGLGAVADALVAD 427


>gi|167966741|ref|ZP_02549018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis H37Ra]
          Length = 445

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 63  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 122

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 123 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 182

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 183 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 239

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 240 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 297

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 298 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 357

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 358 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 416

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 417 VLVKASNAAGLGAVADALVAD 437


>gi|310814905|ref|YP_003962869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
 gi|308753640|gb|ADO41569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ketogulonicigenium vulgare Y25]
          Length = 503

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 155/474 (32%), Gaps = 40/474 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   + G +        V+GI+IDSR + P   F A+ G    G  F+  A++ GA
Sbjct: 9   SLAEL--GLHGATGARGSARRVSGIAIDSRDLRPGMLFAALPGTQVHGASFVERALKAGA 66

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V +    A IG       + +  + DV  A+   A        A + A+TG+ GKT+
Sbjct: 67  TAIVTDPAGAAIIGDTLIGQEVGLVVMRDVRAAVAGAAALWFGVQPAMMAAVTGTNGKTS 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LG 168
               L             IG+          L     D            + G+    + 
Sbjct: 127 VTSFLRQIWQYAGHKAINIGTTGVDGDWHFPLKHTTPDALTLQRILSEAAEAGVTHAAME 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V   +A  T  +  HL      +   +AKA +F  L     I +   
Sbjct: 187 ASSHGIEQRRLEGVMLSVAGFTNFSQDHLDYHKTFDAYFNAKAGLFSRLLPEDGIAVINI 246

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D       A+      + I   GK+  A  +L   +  +    +  + +G++ +     I
Sbjct: 247 DDPKGADIARVAEDRGQEILGVGKNPGARMRLVAQRFDATGQDLRFEWRGQAYQQRLDLI 306

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A+N+L+  G+      D      A        GR +      N      +D ++  
Sbjct: 307 GGFQAENVLLAAGLAIASGDDPAHVFAAFPHLTTVRGRMQLAARRGNGA-SVFVDFAHTP 365

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +         VL  I PH  GR +A++G     G         L    +      V ++ 
Sbjct: 366 DAIET-----VLQAIRPHVMGRVVAIVGA----GGDRDRTKRPLMGAAAARFADMVIVTD 416

Query: 409 -----FHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     ++DA            V          L     L  GD +++  
Sbjct: 417 DNPRTEDAATIRDAVMAGAVAEGGCDVREVGDRAEAILRGVDMLEAGDALIICG 470


>gi|78187957|ref|YP_376000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium luteolum DSM
           273]
 gi|78167859|gb|ABB24957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 95/482 (19%), Positives = 162/482 (33%), Gaps = 38/482 (7%)

Query: 1   MNPLWTFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M P+    ++L+ +  + +  G      V  ++ DSR + P   F A++G   DG  FI 
Sbjct: 10  MQPVA-LREILRGMGAYEVAAGQTDGVMVRMLTNDSRVVEPGSLFVAVRGFAADGRGFIK 68

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
            A+ +GA  VV   D    +     P   V D   AL+  A A       +  I+ +TG+
Sbjct: 69  DAIARGASAVVSE-DFPMELALNGPPCIRVPDARRALSLAAAAYYGHPADRLRIVGVTGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDF 162
            GKTTT  +++  LS    +   IG+    IG                  L RM VD   
Sbjct: 128 NGKTTTARLISSILSMNGISCGYIGTGKAIIGDREIPLERTTPEAHGLHRLFRMMVDGGC 187

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S         H +    AV T + P HL     +E  A AK ++F+ L   G 
Sbjct: 188 RAVSMEVSSHALELGRVHGIAFQAAVFTNLTPDHLDFHPSMESYAEAKRKLFDQLAPGGI 247

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIY----SFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              N +D     + A+               FG  +         ++    S +      
Sbjct: 248 GIFNTEDPMATFMAARVAEEQRACCSLDAAGFGGMRCGLNYGAMVRREGVGSSVVALSFP 307

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           + ++             M M     +     V     A S+   +   G+  +       
Sbjct: 308 EGVQPEEEFRLLGRFNVMNMLEAAAAAHQLGVPARDVAASLPGLQGVEGRMEQVEGPGFE 367

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T I + Y   P ++  ++  L ++ P  +GR + V G     G   +    ++  +   
Sbjct: 368 GTAIVD-YAHTPDALHQSLGTLRELLP-PDGRLLVVFG---CGGNRDRQKRPEMGRIAIE 422

Query: 399 YNISHVWLS----GFHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV-- 449
                V  S         A+ D +   +                     L  GD+++V  
Sbjct: 423 MADFSVITSDNPRDEDPEAILDEIEGGMGGGEHLRIPDRAEAIRTAVGMLRSGDILLVAG 482

Query: 450 KS 451
           K 
Sbjct: 483 KG 484


>gi|295688556|ref|YP_003592249.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
 gi|295430459|gb|ADG09631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter segnis ATCC
           21756]
          Length = 486

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 92/461 (19%), Positives = 156/461 (33%), Gaps = 48/461 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                + G++ DSR +     F A+ G   DG DF   AV KGA  ++        +  L
Sbjct: 14  ANDSVIAGVTADSRKVTAGWLFAALPGTKVDGRDFAEGAVAKGAAAILA---PEGGLEGL 70

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YA 138
            +PV   +D   A    + A   +  A  +A+TG+ GKT+         + +        
Sbjct: 71  GVPVVRSEDARRAYALASAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFAQLGHKAASMG 130

Query: 139 CIGSYNNHIGVPLTL---ARMPVDVDFGIFEL--------------GMSHLGEIRFLTHL 181
            +G   +  G P        +       + E+                S  G  +     
Sbjct: 131 TLGVVVSEAGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRVDG 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+   A  T     HL     +E   +AK  +F+ L   G   +   DS      A +  
Sbjct: 191 VKLKAAAFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGATAVLNADSEAFPTFASTAV 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              ++++S G+      +L           + V+ QG++ ++     G   A N+L+  G
Sbjct: 251 TSGQSVFSVGE-DGQGLRLISRTPTPAGQDLVVEAQGRTYDIRLPLAGAFQASNVLVAAG 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      DV   +KAL       GR +R     + G      E+Y     +     +VL 
Sbjct: 310 LCVAAGEDVGKVLKALENLEGAAGRLQRVGRGPHGG------EAYVDYAHTPDGLQTVLE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            + PH  G+ IAV G     G         L   +         ++  +           
Sbjct: 364 ALRPHTRGKLIAVFGA----GGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRA 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+ +A P +  +                L +GDV+VV  K 
Sbjct: 420 AILEAAPGAREI---GDRRAAIRAAVDLLAEGDVLVVAGKG 457


>gi|83942758|ref|ZP_00955219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
 gi|83846851|gb|EAP84727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfitobacter sp. EE-36]
          Length = 493

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 148/461 (32%), Gaps = 36/461 (7%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM- 74
           G +        + GIS+DSR + P   F A+ G    G +FI +A+  GA  V+ + +  
Sbjct: 12  GLTAKGGGNPPIAGISVDSRQVQPGTLFAAMPGSKVHGAEFIQYALHMGAVAVLTDAEGA 71

Query: 75  --VASIGSLSIPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              A   + +     V D    AL++ A         T+IA+TG+ GKT+    +     
Sbjct: 72  KLAADALAQADVALVVTDAPREALSRAAALWYGAQPQTMIAVTGTNGKTSVSTFVRQIWI 131

Query: 132 SI-----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
            +            +        +           +      GI    +  S  G  +  
Sbjct: 132 EMGLAAVNLGTTGVEGAWTAPLAHTTPEPITLHRTLAEASANGITHAAMEASSHGLDQRR 191

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V    A  T     HL      +    AKA +F  +       +   D    +    
Sbjct: 192 LDGVTLKAAGFTNFTQDHLDYHETFDAYFDAKAGLFSRVLPEDGTAVINIDDPKGVDMVA 251

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + + G+    D  L   +  +    +    +GK+ +   + IG   A N+L+
Sbjct: 252 IARARGCEVITVGR-DGGDLHLTGQRFDATGQDLRFSYRGKTYQKRLNLIGGFQADNVLL 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V    AD       L       GR +      N G    +D ++  +  +      
Sbjct: 311 AAGLVIACGADPAHVFDTLPHLTTVRGRMQLAATRDN-GGAVFVDYAHTPDAIAT----- 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L  + PH  GR +A++G     G         L    +  +   V+++  +  +     
Sbjct: 365 ALQAMRPHVMGRLVAIVGA----GGDRDRAKRPLMGQAAAAHADLVFVTDDNPRSEDPAT 420

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  +             L    ++  GD +++  K 
Sbjct: 421 IRAAVMEGAPEATEVGDRAEAILRGIDAIGTGDALLIAGKG 461


>gi|167461964|ref|ZP_02327053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384648|ref|ZP_08058326.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150533|gb|EFX44014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate
           ligase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 505

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 159/483 (32%), Gaps = 48/483 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L     L Q +    +   P   + GI   S S+ P + F  + G   DGHD++  A
Sbjct: 1   MNVLK-LSQLTQDLLVKRMIGNPDTEITGIKSYSGSVTPGDLFICVPGVLADGHDYVNEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +Q+G   ++    +    GS  IP   V D   A+  LA A          +I +TG+ G
Sbjct: 60  IQRGCAALMAEKKVERLEGS--IPCIVVPDTRRAMAVLADAYYGHPSNAMNLIGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDF 162
           KTTT  M+             IG+ +  +G                  +       +  +
Sbjct: 118 KTTTTHMIEHIFHHTGHKTGLIGTVSMKLGSYIEKTENTTPESLVLQSMLKRMADREAKY 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L   R      +   AV T ++  HL   S +++    K+ +F  L  +  
Sbjct: 178 AVLEVSSHALRMGRVRGCNFK--TAVFTNLSHDHLDYHSSMDQYLEDKSILFGQLGNSYG 235

Query: 223 IFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  +    K  A     +  +G  + +D +  + +   E +   +     S 
Sbjct: 236 SLPKVAILNADDPFSKKLAAKTSAQVIHYGIDQPSDVRASEIRMNQESTSFWLDTYLGST 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +  + +G     N L  + +  +    ++   + L  F   +GR +       Q F  +
Sbjct: 296 WIHLNVVGIFNVYNALAAIAVSLVEGIPLEDIKQRLEGFKGVKGRFQAIE--TGQDFQVI 353

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++N +         V+S      +G+ IA++G               +    +    
Sbjct: 354 VDYAHNPDGLE-----KVISTARAITKGKIIALIG----CEGDRDKAKRPIMAAKAAILA 404

Query: 402 SHVWLSGFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               L+  +            +   L  +         +              GD V++ 
Sbjct: 405 DKAILTSDNPRSERSESILEDMVRGLDNAGLSRCETITSRKDAIHRALELAKTGDCVLIL 464

Query: 450 -KS 451
            K 
Sbjct: 465 GKG 467


>gi|330964052|gb|EGH64312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 487

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 154/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T         A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDGAAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATADDVVVLAGKG 455


>gi|307719432|ref|YP_003874964.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
 gi|306533156|gb|ADN02690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta thermophila
           DSM 6192]
          Length = 503

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/474 (17%), Positives = 141/474 (29%), Gaps = 47/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL AI+   +       V  ++ DSR +     FFA+ G H DGH F+  A+ +GA 
Sbjct: 5   LSSLLDAIKPEEVRGGGDPRVRLLAYDSRDVESGALFFALPGLHTDGHRFVEDALGRGAV 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VV   ++ +      +    V +   AL+  +            +  +TG+ GK++T  
Sbjct: 65  AVVHERELPSYRE--GVVYLRVKNARRALSAASAVFYGHPSQDLEVTGVTGTDGKSSTTY 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV------------------DVDFGIFE 166
            +   L +      CI +     G       +                         + E
Sbjct: 123 FIYQLLRASGVKVGCISTALFSTGGEPEPNPLRQSTPEAPFVHGALARMREAGCTHAVVE 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L         VR  + V+T I   H+      E+    K  +F GL + G   LN
Sbjct: 183 ATSHGLSPRTARLEDVRFTVGVLTNITHEHMEFHGSFEQYREDKGRLFRGLPEGGKAVLN 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L  ++ A      Y  G  + A       ++    S   V  +      V  
Sbjct: 243 LDDPSSGFLAERTRAG--VWGYGLGTREGARLWAEVREESLAGSRCLVHGRETLEVWVPF 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
              +++   +   LG  +    + +  +  +       GR +R               + 
Sbjct: 301 PGRFNVENVLAAVLGAAAAAGKEPEGFLSHVPHLEGVPGRMERVEAGQPFLVLVDYAHTP 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            A          +L  +    EGR I V G   E           +   ++      V L
Sbjct: 361 GA-------FEKLLPFVRRFVEGRLIVVFGSAGE----RDRTKRPMQGRVASRWAEVVVL 409

Query: 407 S-----GFHVLALKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVV 448
           +     G   +A+   +                               +GD V+
Sbjct: 410 TDEDPRGEDRMAILREIAAGCEGLVEGESLFMVPDRREAIGLAVGMAREGDAVL 463


>gi|225864166|ref|YP_002749544.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
 gi|225786057|gb|ACO26274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           cereus 03BB102]
          Length = 255

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 92/229 (40%), Gaps = 9/229 (3%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I  G          ++G+ IDS++I     F  I      DGH+++  A+ 
Sbjct: 10  MNLKKLEEVINGGGLHESFHHLEIHGVCIDSKNIKEGNVFVPII--RVKDGHEYVKEAMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 68  NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 125

Query: 123 ---KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
              K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G      
Sbjct: 126 KDIKDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIER 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                       +   + + F     + S + E    ++          
Sbjct: 186 FTWNSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 234


>gi|225077133|ref|ZP_03720332.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
 gi|224951544|gb|EEG32753.1| hypothetical protein NEIFLAOT_02188 [Neisseria flavescens
           NRL30031/H210]
          Length = 492

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  +  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFIFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +             + +S  G  +   + V    A+ T +   
Sbjct: 149 ALKETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWQGLQHAVINIDDGYGAELVCRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIADFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLGKICPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGTALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVEGADKVVITSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464


>gi|328471994|gb|EGF42871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 10329]
          Length = 493

 Score =  130 bits (327), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++ 
Sbjct: 21  ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A
Sbjct: 81  IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182
            +G+  N  G    L          +                  L +S  G I+     +
Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V T ++  HL     +EE A+AK  +F   +    I    D+      K  ++A+
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCDQAIINVDDEVGAAWAKQLTNAI 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +            +         +    Q     +    IG   A N+++    
Sbjct: 259 AVSLAPT--TEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D    +   +   P  GR + ++             + +A           L  
Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAENRAKVVVDYAHTPDA-------LEKALQA 369

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H +G+  A+ G     G    +    +   ++      V L+  +            
Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKD 425

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L +               +   +    D++++  K 
Sbjct: 426 MLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKG 465


>gi|257126832|ref|YP_003164946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
 gi|257050771|gb|ACV39955.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptotrichia buccalis
           C-1013-b]
          Length = 505

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 67/481 (13%), Positives = 150/481 (31%), Gaps = 46/481 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           + +  +   +    +  + GI  DSR I     F A+ G   DGH+FI +AV  GA +++
Sbjct: 4   IFKDTEYKVLKDGKKFEIRGIEYDSRKIEKDFVFVAMTGSAVDGHNFIQNAVDNGAKMII 63

Query: 70  VNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125
              ++       +  I    V+D+   L  +A       ++K  I+ ITG+ GKTT+  +
Sbjct: 64  CEKEVDVKQYTNTTEITFVLVEDIRKKLGIIASNYYDYPQNKIKIVGITGTNGKTTSSFI 123

Query: 126 LTIALSSIKKTYACIGS-----YNNHIGVPLT-------LARMPVDVDFGIFELGMSHLG 173
           L   L    +            +      P +          +    D+ I E+  SH  
Sbjct: 124 LENILEKTARIGTTGNRILDEEFQTVNTTPESLELIKLIDKSVKKGADYFIMEV-SSHAL 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  +  +++   A+ T +   HL     +E   +AK ++   + +          +  +
Sbjct: 183 EIGRV-DMLQFDSAIFTNLTQDHLDFHKTMENYFNAKKKM-FSMLRNNNSQGVGVINIDD 240

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              AK ++      Y     +N +  +         + M++++  ++    +     +  
Sbjct: 241 EYGAKIYSEKKDNNYISISVRNENADIWGDILNYTNNGMKIKINLENYLEKNKHNLKNSD 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 + ++            A ++    E      +           +   N   A +
Sbjct: 301 GEYKFEINLIGEYNLYNVLGCVASALSLGIEMSVIVEKLKEMPVVPGRFETIKNELEARI 360

Query: 354 KAAI--------SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                       ++   +    + R I + G     G              +     ++ 
Sbjct: 361 VVDFAHTDDGLLNIGKTLKQITDKRVITIFGA----GGDRDHEKRPKMAKAAAKFSDYII 416

Query: 406 LSGFHVL---------ALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           L+  +            ++  L                +    +    L   D +++  K
Sbjct: 417 LTSDNPRTENPVNILADIEKGLIDEKYPFDKYLIISDRERAIKYGIKMLEKDDSLLIAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|306968291|ref|ZP_07480952.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
 gi|308354132|gb|EFP42983.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu009]
          Length = 432

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 50  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 109

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 110 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 169

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 170 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 226

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 227 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 284

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 285 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 344

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 345 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 403

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 404 VLVKASNAAGLGAVADALVAD 424


>gi|46577019|sp|Q88Y23|MURE_LACPL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++
Sbjct: 22  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 76

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 77  PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136

Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    I                         D       + +S +  +      +   IA
Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196

Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   HL     + +     +                     +  + +  +      
Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG   +A    +  +  S  +  ++ + G    V    IG     NML       
Sbjct: 257 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  IK+L      +GR +                + +         ++ L  I 
Sbjct: 317 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 369

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417
                    V+G     G+  ++    +A++   ++   ++ S          + +   A
Sbjct: 370 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 426

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V   E           +   GDVV++  K 
Sbjct: 427 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 462


>gi|329924128|ref|ZP_08279361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
 gi|328940860|gb|EGG37170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Paenibacillus sp. HGF5]
          Length = 494

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 145/484 (29%), Gaps = 55/484 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH+F   A  KG
Sbjct: 1   MNLKQLSSVLAAAVIEGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHEFAAQAADKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+  LA A   +      +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANAFYHQPSSRMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   ++        IG+     G                            +  + E
Sbjct: 116 TYLIETIMNDFGLKTGLIGTIQMKYGGQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222
           +  SH  E   +        A+ T +   HL     +EE         + +     K  +
Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDES 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   A         + ++G  ++AD +       ++ +   V     S +
Sbjct: 234 ARKYAVLNADDDASAYFAKQTAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  +    +    ++    +L      +GR +              
Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKNSLESVPGVDGRVEVVDEGQPYAVIVDY 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +          +VL  ++   EGR I V G     G         +   ++     
Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVITVFG----CGGDRDRTKRPIMGKIAAKYSD 402

Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449
            V ++  +            ++  L    +     +                  GDVV++
Sbjct: 403 VVLVTSDNPRTEDPELILKDIEAGLVEDGVAAESYKLIVDRRKAIEKAIEMASPGDVVLI 462

Query: 450 --KS 451
             K 
Sbjct: 463 AGKG 466


>gi|254671179|emb|CBA08299.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria meningitidis alpha153]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +          +  + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATVAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRLLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|240124143|ref|ZP_04737099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID332]
 gi|268682768|ref|ZP_06149630.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
 gi|268623052|gb|EEZ55452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID332]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 83/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   +G++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIGLLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|149275990|ref|ZP_01882135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
 gi|149233418|gb|EDM38792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter sp. BAL39]
          Length = 485

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  I   S+       V  +  DSR +     FFAI+G   DGH +I   V+ GA 
Sbjct: 3   LQDVLYGITITSLVGNTSREVTALVFDSRKVVKDSVFFAIRGTMSDGHQYIDDTVEAGAS 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
           +V+    ++  I         V++   AL ++A        SK  +I ITG+ GKTT   
Sbjct: 63  VVICE--VLPEIRRELATYIQVENSSVALGQMAANFYGHPSSKLKLIGITGTNGKTTIAT 120

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVPLTLA-----------RMPVDVDFGIFELGMS 170
           +L      +       + + ++ N + VP T             +  VD       + +S
Sbjct: 121 LLFKLFRELGYGVGLISTVQNHINDVVVPSTHTTPDPIALNELLQSMVDDGCEYCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +     V + I   HL      +    AK   F+ L        N DD 
Sbjct: 181 SHAVSQHRIEGLTFRGGVFSNITHDHLDFHHTFDNYIKAKKAFFDVLPANAFALTNLDDR 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       ++   + ADF+     +  E S+  + L     +V    +G 
Sbjct: 241 NGMVMLQNTKATKK----TYALKQLADFK----AKIIENSFSGLHLDIDQADVFFKLVGS 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  +    + ALS     EGR                   Y   P
Sbjct: 293 FNAYNLLAVYGTAMMLGEEQLAVLTALSNLTGAEGRFDYVSSKQQIIGIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +++  +S +  I    E     +       G         +   ++      V L+  +
Sbjct: 349 DAVQNVLSTIQDIRKGTEQVITII-----GCGGDRDKTKRPVMAQVACDWSDKVILTSDN 403

Query: 411 VL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                       ++  +  +                        GD++V+  K 
Sbjct: 404 PRTEDPQTILSEMEAGVSPTNKRKTLSILDRREAIKTACHLAKPGDIIVLAGKG 457


>gi|240128813|ref|ZP_04741474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-93-1035]
 gi|268687195|ref|ZP_06154057.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627479|gb|EEZ59879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|240116313|ref|ZP_04730375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID18]
 gi|268601980|ref|ZP_06136147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
 gi|268586111|gb|EEZ50787.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID18]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|215411876|ref|ZP_03420658.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 94_M4241A]
 gi|298525651|ref|ZP_07013060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308376925|ref|ZP_07668381.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
 gi|298495445|gb|EFI30739.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate-D-alanyl-D-alanyl ligase [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308349502|gb|EFP38353.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu008]
          Length = 439

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 57  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 116

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 117 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 176

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 177 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 233

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 234 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 291

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 292 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 351

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 352 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 410

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 411 VLVKASNAAGLGAVADALVAD 431


>gi|325203521|gb|ADY98974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Neisseria meningitidis M01-240355]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA               +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGILAAQVYGNVSDGLKFWGVTGTNGKTSITQWLAQAADLLGEKTAIVGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +             + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVSFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELVGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|319789829|ref|YP_004151462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
 gi|317114331|gb|ADU96821.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermovibrio
           ammonificans HB-1]
          Length = 485

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 55/477 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +     G  P   V GI+ DSR + P   FFA++G   +G+ F   A++KG
Sbjct: 1   MKLPHLLKGVP-LLCGGAPDVEVKGITADSREVKPGFLFFAVRGTKVNGNTFAEEALKKG 59

Query: 65  AGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  VV +       + +   PV  V++   AL   A       +  +  +  +     T 
Sbjct: 60  ASAVVTDSRKWFEKLSAAGKPVLLVENSRKALATAAANLYGNPQKELKILGVTGTNGKTT 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-------------- 169
               +  +  +             G    L          +    M              
Sbjct: 120 TTFLLFKALNRLGVKAGIIGTVSWGSEEELHPSSRTTPSAVELFKMLKELKNRGCEFVVC 179

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +   H +    A+ T + P HL     +EE   AKA++F   + +     + 
Sbjct: 180 EVSSHGLHQHRVHGIEFEGAIFTNLTPEHLDYHGNLEEYFLAKAKLFRLSKLSVVNRDDP 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +    L+A    +      ++GK      +    +    +  + +     +++V H+ 
Sbjct: 240 YGTTLSALRA----VNGGKTVTYGKK----SRNYTIEAIDPEGSVLIGTPKGAVKVKHNL 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N+     ++S L  +     +A           +           T       
Sbjct: 292 KGEFNGYNVTAAFSLLSELGFEPLNLKEAFKNVKVPGRMEEVVPGVFVDYAHTPDA---- 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                       L+ +     GR I V G     G         +   ++      V ++
Sbjct: 348 --------LQKALNALKKACSGRLIVVFG----CGGDRDRTKRPVMGKIAATLADSVIVT 395

Query: 408 GFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   +P  +      E                 D +++  K 
Sbjct: 396 SDNPRSEPPEQIAKEVVAGIPEELRGKVTVELDRKRAIELALRGKGQADYLLIAGKG 452


>gi|260439870|ref|ZP_05793686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291043146|ref|ZP_06568869.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
 gi|291012752|gb|EFE04735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI2]
          Length = 492

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|217979584|ref|YP_002363731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
 gi|217504960|gb|ACK52369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocella silvestris
           BL2]
          Length = 490

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 93/472 (19%), Positives = 161/472 (34%), Gaps = 41/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL          +    V  +S DSR +AP+  FFA+ G   DG  F   A +KG
Sbjct: 1   MRLAELLP--GASLTNDLASLDVAALSCDSRKVAPKALFFAVPGTKADGLAFAPQAARKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V      ASI     PV  V DV  AL + A     R   TI+AITG+ GKT+   
Sbjct: 59  AVAIVAEGKSAASIE--GAPVIAVADVRAALAEAAARFFPRQPETIVAITGTSGKTSVAA 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
            +    ++     A +G+             +       + E              L  S
Sbjct: 117 FVRQLFAANGFAAASLGTLGVVAPNGSVYGSLTTPDPINLHETLDGLAASGVTHLALEAS 176

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T ++  HL   + + E  +AK E+F+ L   G   +   DS
Sbjct: 177 SHGLTQRRLDGVRLKAGAFTNLSRDHLDYHATMAEYLAAKLELFQRLLDPGQPAVIDADS 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                   +       I++ G    +  +L +    +  + +EV  +G+  ++     G 
Sbjct: 237 DVATEVIAACKARGLKIFTVGSKGES-LKLLRATPKAAATGIEVAHEGRIYKLELPLAGA 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+  G+  +     + A+ AL         G+  +     G    +D ++  + 
Sbjct: 296 FQTSNALVAAGLAIVCGVSAERALTALEHIEG--APGRLEKVGERNGAPIYVDYAHKPDA 353

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   VL  + P   GR + V G     G    +    +   ++      V ++  +
Sbjct: 354 LE-----KVLCALRPAVAGRLLVVFG----CGGDRDAGKRPIMGEIAAKLADLVIVTDDN 404

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      A+      +  V              ++L  GD +++  K 
Sbjct: 405 PRSEDPASIRAAILKGAAGAATVREIGDRASAIRAGVAALNSGDCLLIAGKG 456


>gi|254373944|ref|ZP_04989426.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
 gi|151571664|gb|EDN37318.1| hypothetical protein FTDG_00100 [Francisella novicida GA99-3548]
          Length = 484

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/476 (12%), Positives = 137/476 (28%), Gaps = 49/476 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   +
Sbjct: 4   IKMKRINQILKFLDIKTLSQN-NFQIESLSLDSRKCDKKSAFVALKGLSTDGNKYIDSVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KG  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT
Sbjct: 63  AKGVSLVLTDSHQFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           +    +   L              +         ++     +               + E
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S     +     +   +A+ + ++  HL     ++    AKA++             
Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +   +    + +            K K                    + 
Sbjct: 232 AIINIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                    M + L   S+        I  L    P +GR +      +         + 
Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A           L  ++ +       + G     G    +    +   ++    S + +
Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIII 400

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++          +  + +    F   +   GD++++  K 
Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 456


>gi|220933944|ref|YP_002512843.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995254|gb|ACL71856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 510

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 137/481 (28%), Gaps = 47/481 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P W    LL+      +       +  + +DSR   P   F A+ G    G      A+ 
Sbjct: 9   PDWRLSTLLEGFAA--VSPGLDVPLRDLCLDSRRAQPGAVFIALAGHRAHGLSHAAEALA 66

Query: 63  KGAGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+      V +   L +P   V  +   L ++A            +I +TG+ GK
Sbjct: 67  RGAVAVLWEPAPGVEAPVDLGVPCVAVPGLGQRLGEIADRFFGHPSGAMKLIGVTGTDGK 126

Query: 120 TTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTLARMPV-------DVDFG 163
           T+  + L   L                            P  L+            V + 
Sbjct: 127 TSVSQFLAQTLYQESGRCGVIGTLGAGVYGELVETGHTTPDALSLHRWLADLRGRGVRYT 186

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221
           + E+  SH      +       IAV+T ++  HL     +E    A A+   + GLE   
Sbjct: 187 VMEV-SSHALVQGRINGAA-LDIAVLTNLSRDHLDYHDSMEAYAEAKARLFRWPGLETAI 244

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          A+     +    +    +    +    +   +     V     S 
Sbjct: 245 LNLDDAFGRKLAAELAEREVQILGYGLAAASGEIEQVRGESVEYRPDGLAFSVVTPWGSG 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+L  L  +  L   +     AL           R          TL
Sbjct: 305 RLETGLLGAFNVHNLLAVLAALLQLGLSLTD---ALERLTHVRTVPGRMERFSGGKGATL 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +   A       VL  +  H EGR   V G     G         L    S    
Sbjct: 362 VVDYAHTPAA----LAQVLQALRMHCEGRLWCVFG----CGGNRDPGKRPLMARASEQFA 413

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V L+  +            +     R   VH          +  S    GD+V+V  K
Sbjct: 414 DRVVLTSDNPRHEDPQDIAREVMTGFERPAEVHQELDRQAAVEWAWSHAAAGDLVLVAGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|327441182|dbj|BAK17547.1| UDP-N-acetylmuramyl tripeptide synthase [Solibacillus silvestris
           StLB046]
          Length = 493

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 148/473 (31%), Gaps = 55/473 (11%)

Query: 16  GHSIGIVP-------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           G  I   P       +  +  +  D+  I P +AF A KG +  G  +I  A++KGA  +
Sbjct: 4   GELIKDWPCTMKGSIRVEIKRVEDDANLILPGDAFIARKGNNSSGISYIDSALEKGAAAI 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126
           VV+ +   +   L +P+  V + L  +   +           T+IA+TG+ GKTT    +
Sbjct: 64  VVDDENYFNEADLPVPIIWVPNCLSFIAYASAKIYNFPAEALTVIAVTGTNGKTTVTHFI 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMP-------VDVDFGIFE----------LGM 169
              L+ + K    IG+    I        M         ++ F   E          L  
Sbjct: 124 GQILNQLDKRAMVIGTNGVFIDREKCYPEMEALTTLQAKNIQFLFKEAIRLDVPYVVLEA 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G  +         I +   +   H+ +    E    +K  +        T+      
Sbjct: 184 SSIGLEKHRLDHCDIDIGIFLNVTEDHIEDHGSFERYKLSKQILS-------TLAKKNII 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  + +              FGK  + D+  +        +   +Q + +   V    +G
Sbjct: 237 NSDDSVCRSIGLATKGKRIFFGKGSHVDYFFQTLVDGPASTTCCIQHKKEKHIVNIPLVG 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N+L  +  ++ L   +      +      EGR +     L           Y   
Sbjct: 297 DYQCSNVLAAISCIAQLDFPLSDICNTIGNLVLPEGRFEHVENQLGLSIVVD----YAHT 352

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +MK  +  L + +          L  M   G            +++     ++ L+  
Sbjct: 353 PDAMKMILQTLKKHTKRR-------LIVMFSCGGNRDKAKRPKMGMIASIYADYIILTTD 405

Query: 410 HV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +++    +                 +    GD +V+  K 
Sbjct: 406 NARNENPQQINKQIREGFSSTQEYIECLNRKEAIEHALNYAEKGDTIVLLGKG 458


>gi|114045891|ref|YP_736441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
 gi|113887333|gb|ABI41384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. MR-7]
          Length = 493

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 149/480 (31%), Gaps = 47/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL            +     +++DSR+I   + F A+ G   DG  FI  A+ +
Sbjct: 1   MMLLRDLL----APWFPYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQ 56

Query: 64  GAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT---IIAITGS 116
           G   V+V+TD +   G +             +   ++ +A       +     I+ ITG+
Sbjct: 57  GVTAVLVHTDSIEEQGKVITTEQGVQIYFYQLAKQVSAVAAVRYPVVQGQSMGIVGITGT 116

Query: 117 VGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164
            GKT+T ++    ++ ++ K        N   G  +       D    +           
Sbjct: 117 NGKTSTSQLCAQLVTLLEGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFAGKGV 176

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V   +AV T +   HL     +E  A+AK  +F        
Sbjct: 177 NTCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDALRHG 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      L   ++       +S      A F  +  +   +     +      ++
Sbjct: 237 LVNLDDPVGAAWLSELANVPAKMWGFSIEAHTEAAFYTKNAQFNDQGVQATLVWPEGEID 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N+L  L  + +   D+      +    P  GR +R+  A N       
Sbjct: 297 IRSPLLGAFNLSNLLAALSALYLQGVDMRALAAKVPYLVPVAGRMERFTTADNITLVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L+ +  H  G    V G     G         L    +     
Sbjct: 357 AHTPDA-------IEQALNALRRHCAGELWCVFG----CGGDRDKGKRPLMGQAAEQCAD 405

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + ++  +            +   L                  + +    GDV+++  K 
Sbjct: 406 RIMVTSDNARSEDPNQIITDIIQGLTHPERALTEVDRVAAIKRVVAQAKPGDVILLAGKG 465


>gi|303240798|ref|ZP_07327311.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
 gi|302591686|gb|EFL61421.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetivibrio
           cellulolyticus CD2]
          Length = 484

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 153/474 (32%), Gaps = 52/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ ++   +       VN I+ DSR       F  ++G   DGH FI  A++ G  
Sbjct: 3   LKELIKDLEIVDVTGDLNLEVNTIAYDSRKTRSGSLFVCVEGFKADGHKFIPQAIENGTR 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++V  ++        I V  VDD   AL  +A            ++ +TG+ GKTTT  
Sbjct: 63  ALLVQREVEV---PEGITVIRVDDTRYALASVADKFHGHPSGDFNLVGVTGTKGKTTTTY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           M+   L    +    IG+ +N IG               +      M       +  + +
Sbjct: 120 MIKSILEMYGQKTGLIGTISNKIGDEVLPTDRTTPESYDLQELFGEMVEKQVNSVV-MEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S               I V T ++  HL      E   +AK ++         +      
Sbjct: 179 SSHALDLHRVSCSEFDIGVFTNLSRDHLDFHKTFENYLAAKIKL-------FKMCKKGLI 231

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +       K        +Y+FG   +AD +     +  +    +V     + ++  +  G
Sbjct: 232 NVDSEYGRKVVENAECEVYTFGIDSSADIRAVDIVKHPDSVEFKVITPWFTGDIAVNIPG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  +G  +++   ++   K L                     +T+I + Y  +
Sbjct: 292 KFSVYNALGAIGSCALMGIPLEYIQKGLKNVTVPGRA----EVVQTGTDYTIIID-YAHS 346

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P S++  ++ +   +P         +  +   G         +   +S        ++  
Sbjct: 347 PDSLENILTTVKGYAPAR-------VISLFGCGGDRDKTKRPIMGEISGKLADFTVITSD 399

Query: 410 HVL---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +++ + ++   +           +        D++V+  K 
Sbjct: 400 NPRTEEPAAIINDIEEGIKKTTSAYITIVDRREAIKYAMQHAQPKDIIVLAGKG 453


>gi|313891502|ref|ZP_07825115.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
 gi|313120079|gb|EFR43258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Dialister microaerophilus UPII 345-E]
          Length = 498

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/486 (15%), Positives = 154/486 (31%), Gaps = 52/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL       I       +  I+ DSR +     F  + G H DGH ++  AV+K
Sbjct: 1   MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++    +        + V  V +    + K+A            +IA+TG+ GKTT
Sbjct: 61  GAIAIIAEKKISV---PEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGM 169
           T  +++  L         IG+ +  IG                   +       +  + M
Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDIIDLQRLLYKMKKAKVTHVCM 177

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG------LEKTG 221
             S    +           AV + +   HL     +   A+AKA++F        ++   
Sbjct: 178 EVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKPNK 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +  ++        +  +++F  +++A+ ++   +   + +      + K  
Sbjct: 238 NACINIDDDYSHIMIDAIKDRKLCKLHTFSMNRDAELKVISTEFTGKNTKFICVYKNKEY 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N++  +        D +  IKAL+ F    GR +             
Sbjct: 298 PVTVKLMGRFNVYNIMAAMSAALSEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVD 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +          ++L+       G+ I V G     G         +   ++    
Sbjct: 358 YAHTPDG-------LENILTTAREITTGKIIVVFG----CGGDRDPMKRPIMGRIAAKYS 406

Query: 402 SHVWLSGFHV-------------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               ++  +                +K+   + +                       D+V
Sbjct: 407 DIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIV 466

Query: 448 VV--KS 451
           ++  K 
Sbjct: 467 IIAGKG 472


>gi|190892588|ref|YP_001979130.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           [Rhizobium etli CIAT 652]
 gi|190697867|gb|ACE91952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diamin opimelate ligase
           protein [Rhizobium etli CIAT 652]
          Length = 506

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 76/460 (16%), Positives = 143/460 (31%), Gaps = 38/460 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR++AP  AF A+ G   DG  FI  A  +GA + + +  
Sbjct: 34  LEAQLEGPAGLLDISGLSSDSRNVAPGNAFVAVAGTKADGAGFIADAAGRGAAVAIASQP 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + A     SIPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  VDA-----SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179
               A IG+             +       + +              +  S  G  +   
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+   A  T +   H+     +E   +AK  +F+ L   G   + + D  +     K+
Sbjct: 209 DGVKLSAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGAPAVIFADDPWSRQAVKA 268

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + + G+  +     R      +Q              +           +   
Sbjct: 269 AVDAGLDVRTVGRKGDYLTLKRVEHFRHKQMAEIHIGDEIFEVDI----PLAGDFQVANA 324

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +       A++      G   R     +     L    Y   P ++    +V
Sbjct: 325 LVAAGLAMSTGVVPKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 381

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
           L+ + P   GR + V G     G         +   ++      V ++  +         
Sbjct: 382 LNSVRPFTTGRVVVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPAAI 437

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +  +                   L  GD ++V  K 
Sbjct: 438 RAEIMAAAACASEIGDRATAIREAVGMLTSGDTLIVAGKG 477


>gi|312148509|gb|ADQ31168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi JD1]
          Length = 508

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L          +  +KD          +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|28897229|ref|NP_796834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839046|ref|ZP_01991713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|260366061|ref|ZP_05778527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260878316|ref|ZP_05890671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896405|ref|ZP_05904901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|31340232|sp|Q87SG9|MURE_VIBPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28805438|dbj|BAC58718.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747474|gb|EDM58422.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus AQ3810]
 gi|308087555|gb|EFO37250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308093167|gb|EFO42862.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308111370|gb|EFO48910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 493

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 46/460 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               V+ + +DSR + P   F A+ G   DG  FI  A++KGA  V+     V + G++ 
Sbjct: 21  ASVLVSELELDSRKVQPGTTFVALVGHVVDGRKFIASAIEKGANAVIAQACDVKAHGTID 80

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
               IPV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A
Sbjct: 81  IIDDIPVVYLDALDKCLSEIAGQLYTYPDMKLIGVTGTNGKTTITQLIAQWIGLVGSKAA 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLV 182
            +G+  N  G    L          +                  L +S  G I+     +
Sbjct: 141 VMGTTGN--GFLDDLKEAANTTGNAVEIQHTLASLAEQQAQYTALEVSSHGLIQGRVKSL 198

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V T ++  HL     +EE A+AK  +F   +    I    D+      K  ++A+
Sbjct: 199 SFAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTQHQCAQAIINVDDEVGAAWAKQLTNAI 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +            +         +    Q     +    IG   A N+++    
Sbjct: 259 AVSLAPT--TEFEHALWASQVAYAESGITIRFDGQFGEGTLHAPLIGEFNAANLMLAFAT 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D    +   +   P  GR + ++             + +A           L  
Sbjct: 317 LLSLGFDKSDLLATAAQLQPVLGRMELFQAEHRAKVVVDYAHTPDA-------LEKALQA 369

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H +G+  A+ G     G    +    +   ++      V L+  +            
Sbjct: 370 LRVHCDGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPVLIVKD 425

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L +               +   +    D++++  K 
Sbjct: 426 MLAGLSKPAEAIVQHDRFKALFYALENAAPQDIILLAGKG 465


>gi|119505125|ref|ZP_01627201.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
 gi|119459107|gb|EAW40206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2080]
          Length = 492

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 146/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    +   +L  I               +++DSR +   + F A+ G   DG D+I  A
Sbjct: 1   MTASASHQHILDRINAALPETAWPNMNGHMTLDSRKVGEGDIFVALPGVQRDGRDYIKQA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
           + +GA LV+   +             +  V D+   L  LA         +  ++A+TG+
Sbjct: 61  LAQGAALVLAEANDFNISTDADSSSRIMRVPDLSAELPSLAKDFYGDPSQEMALVAVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLARMPVDVDFGI 164
            GKT+  E +   L ++     C+             + N    V     ++      GI
Sbjct: 121 NGKTSVVEFVGQLLRALGVEAGCVGTLGSRLEAAPADAMNTTPDVLTINHQLADWQHQGI 180

Query: 165 FE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S     +     +  H  V T +   HL       + A+AK  +F        
Sbjct: 181 KHVALEASSHALHQGRLASLSLHTGVFTNLTRDHLDYHGNAADYAAAKLSLFNTFNLKRA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           IF   D    ++L     +    T+           +  +      QS         + E
Sbjct: 241 IFNADDPVASQVLAVAGASAIGITLEGAEAHVQVAIRSMRPMLLEIQS------PWGAAE 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G   A N++  +  V+ L  D      A     P  GR +R   + N+      
Sbjct: 295 INLALSGRFNAFNVVAAIVAVTGLGHDFHRVCAAAESLKPVPGRMERILMSGNRLAVVDY 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A         S L  +    +GR   V G     G    S    L    +     
Sbjct: 355 AHTPDA-------LESALQTLRGETKGRLWVVFG----CGGDRDSGKRSLMGRSAARWAD 403

Query: 403 HVWLS-----GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H+ ++     G     + + +                      +    GD V+V  K 
Sbjct: 404 HIVVTSDNPRGEMPEKIIEDVISGCGNQAEVVVDRAEAIRHALALAESGDTVLVAGKG 461


>gi|46576907|sp|Q7MNV6|MURE_VIBVY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 493

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
            +    V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G 
Sbjct: 19  ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGL 78

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    + 
Sbjct: 79  VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
            A +G+  N  G    L          +                  L +S  G ++    
Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    V T ++  HL     +E  A AK  +F   +    I    D+   +  +    
Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G+    S      +   L        +S + ++  G   +   H           + L
Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + ++L   VD      S    +   G+     +N     ++D ++  +          L
Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
             +  H  G   A+ G     G         +   ++     HV L+  +          
Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 423

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L R               +   +    D++++  K 
Sbjct: 424 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|194335056|ref|YP_002016916.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312874|gb|ACF47269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prosthecochloris
           aestuarii DSM 271]
          Length = 499

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 98/509 (19%), Positives = 169/509 (33%), Gaps = 57/509 (11%)

Query: 4   LWTFHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T  DL+  +    +  G  P   V+ ++ DSR      A+FA++G   DGH FI  A+
Sbjct: 1   MMTLEDLIGLLDPLEYLAGRTPLKEVHALTADSRQAVEGGAYFALRGYVTDGHHFISDAL 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            KG G+VV     +            V D   AL   A            +I +TG+ GK
Sbjct: 61  SKGVGVVVCEE--IPVSVDERCCYIRVADCRTALAAAAAEWFGHPASSLRVIGVTGTNGK 118

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163
           TTT  ++   L         IG+    IG                  L    +    +  
Sbjct: 119 TTTARLIRTMLDRSGVKTGYIGTGQALIGDESIVLERTTPEAMDLHALFRKMVNCGCEAV 178

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH   +     +   + AV T + P HL   + ++E  SAK  +F  +   G  
Sbjct: 179 VMEV-SSHALVLHRTEGIS-FYGAVFTNLTPEHLDFHATMDEYGSAKQILFRQVAPDGFG 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            +N DD++  ++        +         FG +  +  + R  +   + S + VQ+ G+
Sbjct: 237 IVNADDAWGSMMAGAFSGSRLFCCTVGSQVFGCTNGSVVRARDIEARMDGSSVTVQMNGR 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +              N++  L I+S   A   +   A +          R     + G  
Sbjct: 297 ACRAS---FLLPGLFNVMNMLEILSAGVAMGLSLETAAASVADVVSVEGRMEPVSDDGGL 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P +++  I  L+++ P  +   I V G     G         L   ++  
Sbjct: 354 FSAIVDYAHTPDALEKVIGALNEVRP-ADSSLIVVFG----CGGDRDRSKRPLMGGIAAA 408

Query: 400 NISHVWLS-----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              HV L+           + DA+   I               +     L  GD++++  
Sbjct: 409 GADHVILTSDNPRSEDPEEILDAIASGITEGSFMRIADRADAIVCGVQMLRPGDLLLIAG 468

Query: 450 --------KSSNSCGF---YRLINLLLEE 467
                          F     +   L E 
Sbjct: 469 KGHECYQESGGRKSYFSDREVVARALQER 497


>gi|59801877|ref|YP_208589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|293398482|ref|ZP_06642660.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
 gi|59718772|gb|AAW90177.1| putative UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610953|gb|EFF40050.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Neisseria gonorrhoeae F62]
          Length = 492

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|255023317|ref|ZP_05295303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL J1-208]
          Length = 339

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/337 (20%), Positives = 120/337 (35%), Gaps = 23/337 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 4   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++       +   +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 64  AVAIIAE-----NQLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 119 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 179 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 238

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +        + +FG  + ADF+    +  S  S  ++        V   
Sbjct: 239 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTFDLATPVGEYTVKIK 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            IG     N+L  +     L   ++ AI  L      
Sbjct: 299 MIGNFSVYNVLAAIATSFALHIPIEKAIATLETIPGV 335


>gi|298531028|ref|ZP_07018429.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509051|gb|EFI32956.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 486

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 139/456 (30%), Gaps = 60/456 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR + P + F A+ G    G+ FI  A+ +GA  VV +             V   +
Sbjct: 17  VRSDSRQVCPGDIFVAMPGTKVHGNSFIPEALDRGAAFVVASEPAGQD------RVLHHE 70

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +   AL +LA A     R    ++ +TG+ GKTTT  +L    +SI      +G+ N   
Sbjct: 71  NPAMALGELARAHFGTDRLSMKVVGVTGTNGKTTTSYILEHIFTSIGYKTGVLGTVNYRW 130

Query: 148 ---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                           +   LARM       +     SH  + + L  +   H+AV T +
Sbjct: 131 PGTVLKAGTTTPDCLDLHRMLARMQAHGVEVVCLEASSHALDQKRLAGI-DIHVAVFTGL 189

Query: 193 APAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +  HL   + IE+   A  K       +      +N DD     L  +        +  +
Sbjct: 190 SRDHLDYHNDIEDYFQAKKKLFWPSNPQNFLGSVINMDDPHGRDLAGE-----APRVMGY 244

Query: 251 GKSKNADFQLRKWKQCSEQS----WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           G  KN   +L+     S  S        Q +  ++     GI            GI   L
Sbjct: 245 GLQKNFSPELQGHLVQSTASGLVMECSHQGRSWTISCSLPGIHNAQNLLAAQGAGICLGL 304

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +K L     +  +            +    ++      ++K            
Sbjct: 305 EPEHFDCLKDLGPIPGRLEKVPAPEGINIYVDYAHTPDALENVCLALKELSFSR------ 358

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDA 417
                   L  +   G                 +   V+L+         G  +  +   
Sbjct: 359 --------LAVLFGCGGDRDRGKRPEMARAVAAHADAVFLTSDNPRFEEPGEIIKDILPG 410

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L     V              S L  G+ ++V  K 
Sbjct: 411 LAGHPCVEVEPDRRQAIQKAVSLLAPGEALLVAGKG 446


>gi|300021773|ref|YP_003754384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523594|gb|ADJ22063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 481

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 145/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+L A             V GI+  S ++     F A+ G   DG  ++  A+Q+G
Sbjct: 1   MRLSDVLPA-GIEPPPGAGSVEVTGITAASAAVGKGAIFAALPGSKVDGASYVPDALQRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  +V+            + +  VD+   AL K+A     R     +A+TG+ GKT+  +
Sbjct: 60  ASAIVIGK-GKGVTVPAGVALIEVDNPRAALAKIAAKFAGRQPRCAVAVTGTSGKTSVAD 118

Query: 125 MLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMS 170
                 +S+             K    +               +    D G+  L    S
Sbjct: 119 FTRQIFTSLGRKAASVGTIGIVKPDGAVYGSLTTPDPVTLHTTLASLADEGVTHLAFEAS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     V    A  T +   H+      E   +AK  +F  L + G   +   D 
Sbjct: 179 SHGLDQNRLDGVELSAAAFTNLGRDHMDYHPTEEAYLAAKLRLFMELLQPGQPAVINTDG 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                 A +       + + G+S +   +    +    Q  + +   G+S +V    +G 
Sbjct: 239 ARSADVAAAAKARGLRVMTVGQSGDTLKRTSLTRDGF-QQRIGILFDGRSFDVRLPLVGA 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +  +N L+  G+        D  + AL       GR +                ++    
Sbjct: 298 YQVENALVAAGLAIATGEKADAVLAALESLKGVPGRLEIIGERNGGLAVVDY--AHKPEA 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +       L    P   GR I+V G     G         +   +S+       ++   
Sbjct: 356 LAA-----ALDACRPFVTGRLISVFG----CGGDRDKGKRPIMGRISVEKADVTIVTDDN 406

Query: 409 ---FHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  ++  + L  +                 S +  GDV ++  K 
Sbjct: 407 PRSEDAASIRAEILAGAAGAREIGNRAEAIATAVSMMQPGDVALIAGKG 455


>gi|221638508|ref|YP_002524770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
 gi|221159289|gb|ACM00269.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodobacter sphaeroides KD131]
          Length = 495

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%)

Query: 11  LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+     G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A            +   +D    L   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALAGSGAALVVAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172
                +++      IG+                 P+TL R+  +          +  S  
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T     HL      E   +AKA +F  +       +   D   
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               A       + +   G   +AD +L   +  +    +    QG+        IG   
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+ +   +        +      S      GR +      N      +D ++  +  +
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  GR + V G     G         L    +  +   ++++     
Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417

Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|294670602|ref|ZP_06735481.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307727|gb|EFE48970.1| hypothetical protein NEIELOOT_02327 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 492

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/445 (17%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D          +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEEATHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFCSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL+           +Y +G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELVGRLKKDCPDLAVYGYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      ++  ++
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAAANDIILIAGKG 464


>gi|215403547|ref|ZP_03415728.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis 02_1987]
 gi|289745432|ref|ZP_06504810.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
 gi|289685960|gb|EFD53448.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis 02_1987]
          Length = 463

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 81  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 140

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 141 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 200

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 201 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 257

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 258 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 315

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 316 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 375

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 376 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 434

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 435 VLVKASNAAGLGAVADALVAD 455


>gi|290476458|ref|YP_003469363.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
 gi|289175796|emb|CBJ82599.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus bovienii SS-2004]
          Length = 495

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL           P+  +  +++DSR  A  + F A+KG   DG ++I  A+ +G 
Sbjct: 5   NLRDLL----APWGVDTPELPLREMTLDSRKAAAGDLFVAVKGHQTDGRNYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+         G++     +PV  +DD+   L+KLA          +  +  +     
Sbjct: 61  AAVIAEAKGKTDNGTIQAMHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+   +          +                 
Sbjct: 121 TTTTQLLAQWSQGLGEISAVMGTVGNGLLGMIVPSENTTGSAVDIQLDLQQLVNQKATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E    AK  +F   +    I  
Sbjct: 181 AMEVSSHGLVQGRVAALPFQAAVFTNLSRDHLDYHGDMENYEEAKWLLFSSHDVKQKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DD   + L      + +       K+ +  +          + + +          + 
Sbjct: 241 ADDDVGQKWLTRLPETVAVTMENRLPKNWSGRWLSTSDIHYHDKGASITFTSSWGQGTLN 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   ++A S   P  GR + +              
Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLQKLLEAASCLEPVCGRMEVFAARDRPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           LS    H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALSAARLHCKGQLWCVFG----CGGDRDKGKRSLMGGIAEQGADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +                            + DVV+V  K 
Sbjct: 410 IVTDDNPRSEEPHSIVEDILTGFIDPGRAMAIHGRVEAVTSAIMQAAEEDVVLVAGKG 467


>gi|240017235|ref|ZP_04723775.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA6140]
          Length = 492

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|306793625|ref|ZP_07431927.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308372153|ref|ZP_07427619.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308334223|gb|EFP23074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu004]
 gi|308338019|gb|EFP26870.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|323719312|gb|EGB28454.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis CDC1551A]
          Length = 431

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 49  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 108

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 109 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 168

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 169 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 225

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 226 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 283

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 284 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 343

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 344 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 402

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 403 VLVKASNAAGLGAVADALVAD 423


>gi|126461544|ref|YP_001042658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
 gi|126103208|gb|ABN75886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 495

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%)

Query: 11  LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+     G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A            +   +D    L   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172
                +++      IG+                 P+TL R+  +          +  S  
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLSEAAEAGVTHAAMEASSH 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T     HL      E   +AKA +F  +       +   D   
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               A       + +   G   +AD +L   +  +    +    QG+        IG   
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+ +   +        +      S      GR +      N      +D ++  +  +
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  GR + V G     G         L    +  +   ++++     
Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAAEHADVLYVTDDNPR 417

Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|317057680|ref|YP_004106147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
 gi|315449949|gb|ADU23513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ruminococcus albus 7]
          Length = 477

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/458 (17%), Positives = 133/458 (29%), Gaps = 53/458 (11%)

Query: 23  PQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
           P   + GI+ D+R  +     F  IKG  +DGHD     + KG   VV   D+       
Sbjct: 16  PDMEITGITSDTRAEVTEGSIFVCIKGKTFDGHDAAQQMLDKGCAAVVCERDLGLE---- 71

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                 V D   A   L  A       +  +I +TG+ GKTT   ++   LS        
Sbjct: 72  --RQIIVTDTRAAFPMLCSAWFGHPERELELIGVTGTNGKTTITTVIKKVLSGFGFKVGL 129

Query: 140 IGSYNNHIG---------VPLTL-----ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           IG+  N IG          P         R   D       + +S  G  +         
Sbjct: 130 IGTCQNEIGDKIIPTARTTPEPYDLFELFRKMADEGCKYTVMEVSSQGLEQKRVQGCHFK 189

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + T +   HL     +E    AK  +F+  +           +  +    +       
Sbjct: 190 AGIFTNLTQDHLDVHGTMENYYQAKKMLFDICD-------TAIINTDDEYGRRYVTEIPC 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++  +  ADF+       +               V  +  G     N L  +  + +
Sbjct: 243 PYKTYSVNGKADFRAEDVMLGTTGVKYVFCDGKVKKNVSFNMPGLFNVSNSLAVIACMEV 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L       IK         GR            FT+I +  +   A     I+VLS I  
Sbjct: 303 LGFTPCNTIKEFEKIQGVRGR---AEIIPTGRDFTVICDYAHTPDA----LINVLSAIKE 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
             +G+   + G     G              +  +   + ++  +         + D L 
Sbjct: 356 GSKGKVKCLFG----CGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRDEDPDDIINDVLK 411

Query: 420 ----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +               +   +    D++V+  K 
Sbjct: 412 GLEGKDTPYVRMTDRREAIHWAIKNAEKDDIIVLAGKG 449


>gi|238927328|ref|ZP_04659088.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
 gi|238884610|gb|EEQ48248.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Selenomonas flueggei ATCC 43531]
          Length = 496

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 133/479 (27%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+  + G  +       +  I  DSR       F  I G H D H FI    + GA 
Sbjct: 5   LEELVALVPGAHVTGNAGTEITSIERDSRKAGKGALFACISGAHVDAHSFIPDVARAGAR 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+     V       + V  V ++  AL+ +             +I ITG+ GKTTT  
Sbjct: 65  AVLTERASVD--VPDGVAVLYVPNLQEALDTIVPYFYDYPARAMRVIGITGTNGKTTTSY 122

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVP-------------LTLARMPVDVDFGIFELG 168
           ++   L            I +      +P             +        +D  + E+ 
Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGIDTVVMEV- 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA-SAKAEIFEGLEKTGTIFLNY 227
            SH   +  +  +     A  T +   HL     +E  A +                   
Sbjct: 182 SSHALALGRVAGI-EFDTAAFTNLTQDHLDFHKTMENYALAKAHLFELVSAPGTKEGKTA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHH 286
             +  +       A     + ++G    AD   +  +   +   + +   GK +      
Sbjct: 241 VLNADDAASETMRAHTHCPVITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTG 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L  +G       +      AL+ F    GR +  R   +         + 
Sbjct: 301 ITGLFNVHNVLAAVGASLAEHVEAADISAALTAFTGVPGRFELVREGQDFAVIVDYAHTP 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL       +GR IAV G     G         +   +         L
Sbjct: 361 DG-------MENVLRTARAVTKGRIIAVFG----CGGDRDRTKRPIMGRIGAEMADIAIL 409

Query: 407 SG-----FHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ + + R                              GD VV+  K 
Sbjct: 410 TSDNPRTEDPAAIVNEVERGVLPVIGDKPYEKIVDRRTAIFHAIQRAQAGDTVVILGKG 468


>gi|240081128|ref|ZP_04725671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268597239|ref|ZP_06131406.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
 gi|268551027|gb|EEZ46046.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae FA19]
          Length = 492

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|304321491|ref|YP_003855134.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
 gi|303300393|gb|ADM09992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Parvularcula bermudensis HTCC2503]
          Length = 480

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 81/467 (17%), Positives = 143/467 (30%), Gaps = 37/467 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+  + GH         + G++ DSR + P   F A+ G   DG  +I       
Sbjct: 1   MRLSDLI-PLDGHL-----DAEITGLTADSRQVKPGFLFAALPGETTDGRRYIDQ----- 49

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +  +  + ++PV   D+   AL  LA          I+ +TG+ GKT+   
Sbjct: 50  AIAAGAAAILAPTGTTATVPVLADDNPRQALAMLAARFHAGQPKCIVGVTGTNGKTSVAR 109

Query: 125 MLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMS 170
            +    S+   +          A    Y      P  +    V             + +S
Sbjct: 110 FVAQLWSAFGHSAGTVGTLGASAPGYDYALRHTTPDPVELHQVISTMAAMGTTHLAMEVS 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR   A  T I   HL      E   +AK  +   L       +   D 
Sbjct: 170 SHGLAQHRADGVRFSHAGFTNITQDHLDYHPSFEAYFAAKMRLLTALLPETGQAVITTDG 229

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  ++     + + + G+       L         +      +G +  V    IG 
Sbjct: 230 AGAEGAIEAAQGAGRRVLTVGRRGETLKLLSCVPHQGGLALTVSVEEGPAQSVALSLIGD 289

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N L+  G+V    A+ +  I+A++      GR +       +G        Y   P
Sbjct: 290 FQADNALVAAGLVIASGAEPEAVIEAMAKLSAAPGRMQPAGQKSCEGGMASAFVDYAHTP 349

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++  A+  +        GR + V+G     G         L    +      V ++   
Sbjct: 350 DAIATALRAIK--PHVPGGRVVVVIGA----GGDRDRTKRPLMGRAAAAGADLVIVTDDN 403

Query: 409 ---FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  A++  +             +        +L  GDV++V  
Sbjct: 404 PRSEDPAAIRSQVAEGAPGAQIIGGREAAIRAGAEALKAGDVLLVTG 450


>gi|307084810|ref|ZP_07493923.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365624|gb|EFP54475.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 392

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 10  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 69

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 70  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 129

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 130 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 186

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 187 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 244

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 245 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 304

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 305 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 363

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 364 VLVKASNAAGLGAVADALVAD 384


>gi|304437329|ref|ZP_07397288.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369585|gb|EFM23251.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 496

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 140/479 (29%), Gaps = 49/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   + G  I    Q  +  I  DSR       F  I G H D H FI    + GA 
Sbjct: 5   LEELAALLPGARIVGDAQTEITSIERDSRRAREGTLFACIVGAHIDAHSFIPDVARAGAR 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            V+     V       + V  V ++  AL+ +             ++ ITG+ GKTTT  
Sbjct: 65  AVLTERASVD--VPAGVAVLYVLNLEKALDTIVPFFYDYPARVMRVVGITGTNGKTTTSY 122

Query: 125 MLTIALSSIKKT---YACIGSYNNHIGVP-------------LTLARMPVDVDFGIFELG 168
           ++   L            I +      +P             +        +D  + E+ 
Sbjct: 123 LVRAILRHAGHRVGLIGTIQAMIEDEVLPTSNTTPDIIVLQQMLAEMRTRGMDTVVMEV- 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNY 227
            SH   +  +  +     AV T +   HL     +E  A AKA +FE +   G       
Sbjct: 182 SSHALALGRVAGI-EFDTAVFTNLTQDHLDFHKTMENYARAKAHLFELVSAPGAKEGKTA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHH 286
             +  +       A     I ++G    AD   +  +   +   + +   GK +      
Sbjct: 241 VLNADDAASETMRAYTRCPIITYGVDHPADLTAQDVQLACDGMELTLMHGGKRLFHLHTG 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+L  +G              AL+ F    GR +  R   +         + 
Sbjct: 301 ITGLFNVHNVLAAVGASLAEQVAATDIAAALTAFTGVPGRFELVREGQDFAVIVDYAHTP 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL       +G  IAV G     G         +   +         L
Sbjct: 361 DG-------MENVLRTARAVTKGHIIAVFG----CGGDRDRTKRPIMGRIGAEMADIAIL 409

Query: 407 SGFHVL-----ALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D + R                              GD VV+  K 
Sbjct: 410 TSDNPRTEDPTAIVDEVERGVLPVIGDKPYEKIVDRRTAIFHAIGRAQAGDTVVILGKG 468


>gi|296166025|ref|ZP_06848476.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898624|gb|EFG78179.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 444

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 154/378 (40%), Gaps = 22/378 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R     D+ + E
Sbjct: 38  GLTIIGITGSSGKTSTKDLVAAVLEPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLVLE 97

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + +  +G + LN
Sbjct: 98  MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIARTKSELPQAVPSSGVVVLN 157

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-- 284
            DD     +   + A  ++   S                  E +     L   + +    
Sbjct: 158 VDDPMVAAMARVTDAWVVRVSRSSHTDSGPSDVWADGVSLDELARPRFTLHAMNAQGTVE 217

Query: 285 ----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L    +     A V+    AL    P            +    T
Sbjct: 218 VGVQLGVYGDHQVTNALCAGAVALQCGATVEQVATALEQAGPVSRHRMHVTTRADGV--T 275

Query: 341 LIDESYNANPASMKAAISVLSQISPHGE----GRRIAVLGDMCEMGELSQSFHIDLAEVL 396
           +ID++YNANP SM+A +  L+ I+         R  AVLG+M E+G+ + + H  +  + 
Sbjct: 276 VIDDAYNANPDSMRAGLQALAWIAHGAGAGERRRSWAVLGEMAELGDDAVAEHDRIGRLA 335

Query: 397 SLYNISHVWLSGF--HVLALKDAL-------PRSIHV-HYSETMDGLFLFIQSSLVDGDV 446
              ++S + + G    + A+                        D     +++ L  GDV
Sbjct: 336 VRLDVSRLVVVGTGRSMSAMHHGAVMEGSWGASGERGAVSVADADAALALLRAELRPGDV 395

Query: 447 VVVKSSNSCGFYRLINLL 464
           V+VK+SN+ G   L + L
Sbjct: 396 VLVKASNAAGLGTLADAL 413


>gi|195941932|ref|ZP_03087314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi 80a]
          Length = 508

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH------VLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L          +  +KD          +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMRIIKDIAKGIVNKVENKDLFFIADRRQAIEKAISLAKAGDLV 468


>gi|302383888|ref|YP_003819711.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194516|gb|ADL02088.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 483

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 89/478 (18%), Positives = 148/478 (30%), Gaps = 50/478 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ +    DLL+        +     + G++ DSR +     F A+ G   DG  FI  A
Sbjct: 1   MSAI-RLSDLLR------RDVAADPVITGVTADSRKVTSGSLFVALPGTAADGRAFIPQA 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + +GA  V+   D       L   +    DV  A    A        AT +A+TG+ GKT
Sbjct: 54  LSQGAAAVLAPQDTPDGAAPL---LVRSGDVRRAYALAARGFYGAQPATCVAVTGTNGKT 110

Query: 121 TTKEMLTIALSSIKKTY-------------------ACIGSYNNHIGVPLTLARMPVDVD 161
           +         +++                          G  +   G    L     +  
Sbjct: 111 SVAAFCRQIWAALGIKAASMGTLGVVAQSGSITESLTPPGLTSPDAGDAARLLATLAEGG 170

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L  S  G  +     V    A  T +   HL     +    +AK  +FE L   G
Sbjct: 171 VTHLALEASSHGIDQRRLDGVTLKAAAFTNLTQDHLDYHGDMAAYRAAKLRLFESLLPRG 230

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +   DS      A +  +    +   G+ +  D  L + +   E   + + ++G   
Sbjct: 231 RTAVLNADSDAYNAFAAASIMSGLGVMGVGE-RGRDLSLIERRAVPEGQRLILDVRGDRH 289

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V+    G   A N L+  G+      D    + AL       GR    +          
Sbjct: 290 DVLLPLAGAFQASNALVAAGLCIAAGEDAARVLHALEKITGAAGR---LQRVSGGRGEAY 346

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +         VL  + PH  GR I V G     G         L   ++    
Sbjct: 347 VDYAHTPDGLET-----VLKALRPHATGRLIVVFGA----GGDRDKGKRPLMGGIAGRLA 397

Query: 402 SHVWLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               ++           ++  +                     + + DGDVVVV  K 
Sbjct: 398 DVAIVTDDNPRSEDPAVIRAQVRAGCPSAREVGDRRAAIREAVAMMRDGDVVVVAGKG 455


>gi|325838528|ref|ZP_08166550.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
 gi|325490823|gb|EGC93125.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sp. HGF1]
          Length = 459

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 189/463 (40%), Gaps = 31/463 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SI-APQEAFFAIKGPHYDGHDF 56
           M    T   +L  I+G  I       +  ++   R    I  P    F ++      H  
Sbjct: 1   MKA-HTLGKILTVIKGTIIQGNSDILIKDVA---RYYEHIEQPNTLLFLVQ------HRN 50

Query: 57  ILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           I    ++ A      VVV+ ++          V  V D+  A +      R      ++A
Sbjct: 51  ID--FKRIAQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TG+ GKTTTK+M+   LS+  K    + S N +    + L R+   +   ++E  +   
Sbjct: 109 VTGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAP 168

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G+I +      P+I +IT I   HL     ++   +AKAE+   + + GT+ LN DD   
Sbjct: 169 GDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD--- 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E +K    +     I  FG      FQ       +      + L     ++   G G H 
Sbjct: 226 EKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQ 285

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  L     +   +  A +ALS F                   T+ID+++N N AS
Sbjct: 286 VYNALAALAATHEMGIGITQAAQALSSFKLLMN---HCEIKKGLNQATIIDDTWNINTAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KAA++ L +++   +   +A++G + ++GE S  +H ++ ++++ +NI ++   G    
Sbjct: 343 LKAAMNTLCELNQQHKK--VALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLAN 400

Query: 413 ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +      +     V   E  +G++  +   L +   +++K S
Sbjct: 401 NIATECSLNGFHGKVFQFEQTEGVYELLSDILNEETTLLIKCS 443


>gi|169831598|ref|YP_001717580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638442|gb|ACA59948.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 499

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 94/477 (19%), Positives = 156/477 (32%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F DL+  +       V    V GI+ DSR   P   F AI G   DGH F+  AV +G
Sbjct: 1   MNFRDLINHLNVLEHSPVLDVPVTGIAYDSRQTQPGFMFVAIGGLITDGHRFVPDAVTRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V++   +        +    V D    L   A            ++ +TG+ GKTTT
Sbjct: 61  AAAVLLQQKVPV---PEGVAWAVVPDTRKGLALAASRFYGEPGRALRLVGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++     + +     IG+ +N IG               +   L RM       +   
Sbjct: 118 THLIAALFRARRPGVGLIGTIHNLIGDEVVPVRHTTPESLDLQRLLRRMADAGVTDVVLE 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH   +  +  L     AV T +   HL   +  E+  +AKA++F GL +     +N 
Sbjct: 178 VSSHALRLSRVHGLS-FEAAVFTNLTQDHLDFHTDFEDYFAAKAQLFTGLGEEAAAIINR 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD +   L      L      ++   + AD +    +         ++ +  S  V    
Sbjct: 237 DDPYGVRLLD----LTRGCRITYAVHQAADVRAAGVRPVPGGVEFLLESEWGSAPVALRL 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L    +  +     +     L       GR   +        +T+I + Y 
Sbjct: 293 SGLFNVYNALAAACVGLVRGFTPEEIAGVLGRVRGVPGR---FERVDQGQEYTVIID-YA 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P  ++  +    +I+P   GR I+V G     G         L   +S     +  L+
Sbjct: 349 HTPDGLENLLRAAREIAP---GRLISVFG----CGGDRDRTKRPLMGAISARGADYSVLT 401

Query: 408 GFHVL---------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +++   R                         GDVV++  K 
Sbjct: 402 SDNPRTEDPLAIIMDIEEGYRRVRPDGYAVVPDRREAIRHAFERARPGDVVIIAGKG 458


>gi|320157428|ref|YP_004189807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
 gi|319932740|gb|ADV87604.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio vulnificus MO6-24/O]
          Length = 493

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
            +    V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G 
Sbjct: 19  ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGL 78

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    + 
Sbjct: 79  VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
            A +G+  N  G    L          +                  L +S  G ++    
Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    V T ++  HL     +E  A AK  +F   +    I    D+   +  +    
Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G+    S      +   L        +S + ++  G   +   H           + L
Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + ++L   VD      S    +   G+     +N     ++D ++  +          L
Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
             +  H  G   A+ G     G         +   ++     HV L+  +          
Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 423

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L R               +   +    D++++  K 
Sbjct: 424 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|113477570|ref|YP_723631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
 gi|110168618|gb|ABG53158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Trichodesmium erythraeum IMS101]
          Length = 509

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 82/480 (17%), Positives = 160/480 (33%), Gaps = 43/480 (8%)

Query: 3   PLWTFHDLLQAIQGHSIGI---VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           P     +LL  +   S+       +  + G++ +S +    + F  + G   DG DF   
Sbjct: 9   PNMKLRELLAKVSSISLTNNYQALETEIKGLATNSHACQTGDLFLGMPGTRVDGGDFWKS 68

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           A+  GA   +V+        + +  V  V D+     ++A A       K  ++ ITG+ 
Sbjct: 69  AIANGAVGAIVSVSAATKHPAKNECVIPVADMSQTCPEIAAAFYDYPGQKMKMVGITGTN 128

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------- 166
           GKTTT  ++   L++ +   A  G+       P           F +             
Sbjct: 129 GKTTTTHLVEFILNNAQLPTALFGTLYMRW--PGFQKTAAYTTSFPVELQNQLAQALAAG 186

Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                + +S     +         +AV T +   HL     +++   AKA +F      G
Sbjct: 187 SKYGIMEVSSHSLDQKRVWGCTYEVAVFTNLTQDHLDYHKDMDDYFEAKARLFSSDYLKG 246

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + + L A+  +  + +  +     + D      +         +      M
Sbjct: 247 RAIVNADDPYGQKLIARLESEKVWSYSTSDT--STDLWASDLEYKPTGVKGMLHTPKGEM 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +   NML  +G    L  D+   +  LS F    GR +R +    Q    +
Sbjct: 305 IFSLPLVGQYNLSNMLAAVGTTLHLGLDLSMVVTQLSDFPGVPGRMERVQVTEGQDVSVI 364

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        ++L    P   GR I V G     G+  ++    + ++ +  + 
Sbjct: 365 VDYAHTPDSLE-----NLLKAARPFIPGRMICVFG---CGGDRDRTKRPKMGKIAAELSD 416

Query: 402 SHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V  S           +  + + +   +                     GD V++  K 
Sbjct: 417 LAVVSSDNPRTEDPERILQDILEGISPEVKPLVISDRAEAIRTAIMEAQSGDGVLIAGKG 476


>gi|215446386|ref|ZP_03433138.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T85]
          Length = 384

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 2   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 61

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 62  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 121

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 122 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 178

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 179 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 236

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 237 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 296

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 297 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 355

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 356 VLVKASNAAGLGAVADALVAD 376


>gi|227113991|ref|ZP_03827647.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 495

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 135/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  + +DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDTPARALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V   +  A+ G++     +PV  + ++   L+ LA     +    +  I  +     
Sbjct: 61  AAIVAEAEGEAADGTVREMHGVPVVYLSNLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+              +                 
Sbjct: 121 TTTTQLLAQWSQALGETSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVDQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        +  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMESYEAAKWALFSEHRVGQMVIN 240

Query: 226 NYDDSFFELLKAKSHA-LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A             +    +  +       + +         E+ 
Sbjct: 241 ADDEVGLRWLAKLPDAVTVTMENNLVPGCRGRWLKATQIDYHDNGATVAFDSSWGHGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     NML+ L  +  L   +D  I A S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLIIAGSQLQPVCGRMEVFHAEAKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV+V  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467


>gi|15618333|ref|NP_224618.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae CWL029]
 gi|15835951|ref|NP_300475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae J138]
 gi|16752621|ref|NP_444885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|33241767|ref|NP_876708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae TW-183]
 gi|8134584|sp|Q9Z8C5|MURE_CHLPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4376699|gb|AAD18562.1| N-Acetylmuramoylalanylglutamyl DAP Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189264|gb|AAF38190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila pneumoniae AR39]
 gi|8978790|dbj|BAA98626.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           J138]
 gi|33236276|gb|AAP98365.1| N-acetylmuramoylalanylglutamyl DAP ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 483

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 156/473 (32%), Gaps = 44/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +Q    G V    V  ++ DSR ++  + F A KG  YDG+DF + A+  G
Sbjct: 1   MDLKELLHGVQAKIYGKVRPLEVRNLTRDSRCVSVGDIFIAHKGQRYDGNDFAVDALANG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
           A  +  +         LS+      ++     +L+        SK   I +TG+ GKTT 
Sbjct: 61  AIAIASS----LYNPFLSVVQIITPNLEELEAELSAKYYEYPSSKLHTIGVTGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++   L S +K    +G+  + +G               +   LA M       +  +
Sbjct: 117 TCLIKALLDSYQKPSGLLGTIEHILGEGVIKDGFTTPTPALLQKYLATMVRQNRDAVV-M 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S +G             AV+T I   HL      E   +AKA++F  +  +G + +N 
Sbjct: 176 EVSSIGLASGRVAYTNFDTAVLTNITLDHLDFHGTFETYVAAKAKLFSLVPPSGMVVINT 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D  +     ++        + ++G    AD++    +  S  +   +    + +      
Sbjct: 236 DSPY----ASQCIESAKAPVITYGIESAADYRATDIQLSSSGTKYTLVYGDQKIACSSSF 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG +   N+L  +  V          +                        +      Y 
Sbjct: 292 IGKYNVYNLLAAISTVHASLRCDLEDLLEKIGLCQPPPGRLDPVLMGPCPVYID----YA 347

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++   ++ L ++ P   GR I V G     G         L   +       V  S
Sbjct: 348 HTPDALDNVLTGLHELLPE-GGRLIVVFG----CGGDRDRSKRKLMAQVVERYGFAVVTS 402

Query: 408 G----FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     + + +       +            +  S   D D+V++  K 
Sbjct: 403 DNPRSEPPEDIVNEICDGFYSKNYFIEIDRKQAITYALSIASDRDIVLIAGKG 455


>gi|228469384|ref|ZP_04054398.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
 gi|228309068|gb|EEK17698.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas uenonis 60-3]
          Length = 499

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 80/454 (17%), Positives = 166/454 (36%), Gaps = 47/454 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V  I  DSR  +    F A++G H DG D+I  A+  G  ++V       S+    +   
Sbjct: 34  VTSIEQDSRRASEGCIFVALRGVHVDGADYIPKALAAGCRIIVTEHPRPESLSDE-VAWL 92

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   A+  LA     R   + TI+ +TG+ GKTTT  +     + +    A   +  
Sbjct: 93  TVTDTAKAIAVLASVYYDRPERQLTIVGVTGTNGKTTTATLCYQLWNWLGMRAALFSTVC 152

Query: 145 NHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             IG                  + R  VD       + +S    ++   + +   +A+ T
Sbjct: 153 IRIGDEEYPATHTTPDALELHRVMRDMVDAGCRYLFMEVSSHALVQQRVYGLPFALALFT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     ++   +AK  +F+ L       +N DD    ++     A     ++++
Sbjct: 213 NLTRDHLDYHGTMQAYIAAKKLLFDNLSPDAYALVNADDRNGSVMVQNCAA----HLHTY 268

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               +AD+  +   Q  + S + +  +    EV    +G + A N+    G+  +L  D+
Sbjct: 269 AMRSHADYMSQLLGQYVDGSTLLLDNE----EVEIKLVGSYNAYNVTAVYGVARLLLPDL 324

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D ++    +   +   G+    A  +G+  ++D ++  +        ++L  +S     +
Sbjct: 325 DKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAHTPDALE-----NLLKTVSELNASQ 379

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRS 421
              V+G     G             ++    + ++L+  +  +         + + +P+ 
Sbjct: 380 VYVVVGA----GGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSEDPQTIIDQMLEGIPQV 435

Query: 422 IHVHYSET--MDGLFLFIQSSLVDGDVVVV--KS 451
                              ++   GD+VV+  K 
Sbjct: 436 ERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKG 469


>gi|77462651|ref|YP_352155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
 gi|77387069|gb|ABA78254.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides 2.4.1]
          Length = 495

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%)

Query: 11  LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+     G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A            +   +D    L   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172
                +++      IG+                 P+TL R+  +          +  S  
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T     HL      E   +AKA +F  +       +   D   
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               A       + +   G   +AD +L   +  +    +    QG+        IG   
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+ +   +        +      S      GR +      N      +D ++  +  +
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRKNGA-SVFVDYAHTPDALA 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  GR + V G     G         L    +  +   ++++     
Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417

Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|242242327|ref|ZP_04796772.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
 gi|242234197|gb|EES36509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis W23144]
          Length = 494

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 155/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             +VVVN ++       ++    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNREL---KLKGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   +        + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLTLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G +  A F  +  K+  +    E      S  V    +
Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V     +++  I A++   P           L     +L  +    
Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458


>gi|149377267|ref|ZP_01895014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
 gi|149358455|gb|EDM46930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter algicola DG893]
          Length = 494

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 147/476 (30%), Gaps = 47/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   LLQ      +  V    ++G+  DSR +   +AF A+ G       +I  A+  GA
Sbjct: 5   SLSTLLQ--GIAPVPSVFDVTIHGLKTDSRDVRAGDAFVALAGARTPADHYIEQAISAGA 62

Query: 66  GLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
            ++++ +           + +  V  +   L K+A            +I +TG+ GKT+ 
Sbjct: 63  TVILLESAQPDECYEHEGVLIVPVTALRAHLGKIADRFFEHPSQRLRLIGVTGTNGKTSV 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
              +   L         IG+     G+P  L          +                  
Sbjct: 123 SHYIATLLQETGTPCGVIGTLG--YGMPGALQEGAHTTPDVVQVNRVLSKIIAQGGRAAA 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +     +    AV T +   HL     ++   +AKA +F   E    +   
Sbjct: 181 MEVSSHALEQGRVDNLTMTGAVFTNLTRDHLDYHGSMDAYGAAKARLFHREELHFAVINF 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD F   L  K      +  YS  +    +  L ++    +     V        V   
Sbjct: 241 -DDPFGRQLYEKLDGKCDRVRYSLHE-AQTELWLTEFAPSIDGFSASVDGLWGRFNVSAR 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +  V  L   V+   +A+    P  GR + +  + +         + 
Sbjct: 299 VLGSFNVSNILAAMASVLSLGVPVERVQQAVERLSPPPGRLEPFAGSNDVRVVVDYAHTP 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A         S L+ + PH  GR   V G     G    +         +      V +
Sbjct: 359 DA-------LNSALAALRPHVGGRLFCVFG----CGGDRDTGKRPEMAREAERGADVVIV 407

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +         +               S V GD+V+V  K 
Sbjct: 408 TDDNPRSEDPDAITSDIVAGFEHPEQIAVIHDRAEAIRQAIHSAVAGDIVLVAGKG 463


>gi|327403145|ref|YP_004343983.1| Alanine racemase [Fluviicola taffensis DSM 16823]
 gi|327318653|gb|AEA43145.1| Alanine racemase [Fluviicola taffensis DSM 16823]
          Length = 762

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 4/219 (1%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP--QEAFFAIKGPHYDGHDFIL 58
           M   ++        +   IG   +  +  I  DSR I       FFA+ G    G++FI 
Sbjct: 1   MRLNYSIEACASIFEATIIGSSSE-SITHIYFDSRKIQQANGALFFALSGHSRSGNEFIE 59

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +A Q+G    V+  +  +         F V++ L AL +LA   R +    ++AITGSVG
Sbjct: 60  NAYQQGIRFFVIAKNASSKFHP-DALYFQVEEPLTALQQLATHHRKQYTYPVVAITGSVG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTT KE +   +S   K      S+N+ IGV L+L  M  +      E G+S  GE++ L
Sbjct: 119 KTTFKEWIFHCISDKFKVVRSPKSFNSQIGVALSLLEMHENASIAFIEAGISKPGEMKIL 178

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             +++P   + T    AH  NF+  EE    K  +F   
Sbjct: 179 RDMIQPDFGIFTAFGKAHRENFADNEEHLLEKWTLFREC 217


>gi|118477615|ref|YP_894766.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118416840|gb|ABK85259.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 258

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 6/226 (2%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I  G          ++G+ IDS++I     F  I      DGH+++  ++ 
Sbjct: 16  MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPII--RVKDGHEYVKESMD 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA   +             +P+  VDD L AL +LA   R      +I ITGS GKTT 
Sbjct: 74  NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSNGKTTV 131

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
           K+++   LSS  + +   G++N+ IG+PLT+  M  + +F I E+GMS  G         
Sbjct: 132 KDIIEGILSSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLILEMGMSEKGCRIIERFTW 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                    +   + + F     + S + E    ++          
Sbjct: 192 NSFRGNCPKVDVKNQNLFKNACILQSEEIEYSVNIKSDDQEKYMMQ 237


>gi|28377795|ref|NP_784687.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum WCFS1]
 gi|28270628|emb|CAD63534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus plantarum WCFS1]
          Length = 550

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A++KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIEKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    I                         D       + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   HL     + +     +                     +  + +  +      
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG   +A    +  +  S  +  ++ + G    V    IG     NML       
Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  IK+L      +GR +                + +         ++ L  I 
Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417
                    V+G     G+  ++    +A++   ++   ++ S          + +   A
Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V   E           +   GDVV++  K 
Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519


>gi|216264794|ref|ZP_03436786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981267|gb|EEC22074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 156a]
          Length = 508

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 145/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|195953853|ref|YP_002122143.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195933465|gb|ACG58165.1| UDP-N-acetylmuramyl-tripeptide synthetase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 463

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 136/448 (30%), Gaps = 48/448 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ +S+ +     FFAI+G   DGHDFI  A++KGA  VV               +  V
Sbjct: 12  NITDNSKEVDKNTVFFAIRGVSKDGHDFIEEAIEKGAPYVVAEKPFKDFKN-----IIVV 66

Query: 89  DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           +D   A  +   A          +I +TG+ GKT+T  ++   LS   K       Y   
Sbjct: 67  EDSKKAFGECVKAHFDNPDEHLKVIGVTGTNGKTSTTHIIHAILSQKYKGGIIGTMYYKL 126

Query: 147 IGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVITTIA 193
               +        V                     +S     +   +  +    V T + 
Sbjct: 127 GNEVIEAPNTTPGVKTWFSLLSKAKEKGLDFVAAEVSSHALDQLRVYPTKFFATVFTNLT 186

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E   +AK  +F+  E      LN DD +  +L  +     I   YS    
Sbjct: 187 QDHLDYHKTMENYFNAKRRLFKDYE-YEVCVLNIDDDYGSMLYEEFKDKAITYGYSENAH 245

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D+  ++ K          + +   ++    G               + +        
Sbjct: 246 LKIDYFDQENKVF----GFYYKNKHYEIKTNLKGDFQAYNMGAS-----ILLGFYMGFDI 296

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            +             R+      G   +ID ++  +         +L       + R I 
Sbjct: 297 EEIQRGILSLSSIPGRFETIELNGVKVVIDYAHTPDALE-----KLLKTAKAITKNRLIC 351

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVH 425
           V G     G   ++    + ++ S  +   +  S           +  + + +  S    
Sbjct: 352 VFGA---GGNRDKTKRPKMGKIASELSDISIITSDNPRFEESMDIIKDILEGIDPSKGPM 408

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
             E             +DGDVVV+  K 
Sbjct: 409 VEEDRKKAIALALDIALDGDVVVIAGKG 436


>gi|215431086|ref|ZP_03429005.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis EAS054]
 gi|289754267|ref|ZP_06513645.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308369637|ref|ZP_07666768.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
 gi|289694854|gb|EFD62283.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis EAS054]
 gi|308326954|gb|EFP15805.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis SUMu002]
          Length = 391

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 9   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 69  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 129 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 185

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 186 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 243

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 244 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 303

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 304 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 362

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 363 VLVKASNAAGLGAVADALVAD 383


>gi|226311546|ref|YP_002771440.1| hypothetical protein BBR47_19590 [Brevibacillus brevis NBRC 100599]
 gi|226094494|dbj|BAH42936.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 388

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 99/365 (27%), Positives = 159/365 (43%), Gaps = 12/365 (3%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +IA+TGS GKTTTKEM+   LS    TY  + + N          R+  +    + 
Sbjct: 18  LDKPVIAVTGSAGKTTTKEMIYSILSLRMPTYKSMYNKNFLGNTRAHTKRIRDEHKAAVL 77

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E G+   G +R    +++P + VIT I  AH+ NF    +++A AK E+   ++ TGT+F
Sbjct: 78  EYGIYRSGHLRQHCKIIQPSMGVITNIGTAHIGNFGGDAKQLALAKTELIRHMKPTGTVF 137

Query: 225 LNYDDSFFELLKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           LN D  +      + +       I +FGK + AD++  + K        E  L+G+    
Sbjct: 138 LNRDCPYSREFVQQPYLGSFTGKIVTFGKEQEADYKAGRTKIEGNGFRFECSLRGEKESF 197

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +   +   VD   + LS F  +  R   YR A N     ++D
Sbjct: 198 FVPIPGEHNLYNALAAIAVAHTMGIPVDDIRRGLSQFRGQRKRLTSYRLANNIQ---VLD 254

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++Y++NP +     + +  +S  G   +IAVL  M EMG+     H D+   LS  N+ +
Sbjct: 255 DTYSSNPDAA---KAAIDVLSQVGHTTKIAVLASMLEMGKYDVKGHEDVGIYLSQKNVDY 311

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           ++  G     +  A  RS      V +  +  GL   +   L      +VK SN      
Sbjct: 312 LYTLGNSARYIARAAIRSGFPANRVRHCLSKAGLHRRLAKQLKPDTAFLVKGSNRLKMGE 371

Query: 460 LINLL 464
            +  L
Sbjct: 372 TVQFL 376


>gi|326423735|ref|NP_759572.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
 gi|30316014|sp|Q8DEK5|MURE_VIBVU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|319999098|gb|AAO09099.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus CMCP6]
          Length = 493

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 152/462 (32%), Gaps = 46/462 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
            +    V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G 
Sbjct: 19  ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPSGL 78

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    + 
Sbjct: 79  VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 138

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
            A +G+  N  G    L          +                  L +S  G ++    
Sbjct: 139 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 196

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    V T ++  HL     +E  A AK  +F   +    I    D+   +  +    
Sbjct: 197 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 256

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G+    S      +   L        +S + ++  G   +   H           + L
Sbjct: 257 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + ++L   VD      S    +   G+     +N     ++D ++  +          L
Sbjct: 313 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
             +  H  G   A+ G     G         +   ++     HV L+  +          
Sbjct: 368 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPTMIV 423

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L R+              +   +    D++++  K 
Sbjct: 424 QDMLAGLTRADSAVVEHDRFSALQYALDNAQADDIILLAGKG 465


>gi|332527092|ref|ZP_08403172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111523|gb|EGJ11505.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrivivax benzoatilyticus JA2]
          Length = 491

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 88/453 (19%), Positives = 146/453 (32%), Gaps = 41/453 (9%)

Query: 27  VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           V G +  DSR + P +AF A  G   DG  F+  A+  GA   +V  D V + G     V
Sbjct: 20  VTGTLRTDSRLVQPGDAFIAWPGYANDGRRFVQQALDAGASTCLVELDGVEAFGFEDARV 79

Query: 86  FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             + D+      +A A          ++A TG+ GKT+T      AL+ + +    +G+ 
Sbjct: 80  ATLPDLKAVTGDIAHAYFEHPSQRLKLVATTGTNGKTSTAWWTAQALTRLGQRCGVMGTL 139

Query: 144 NN--------------HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                                    R  VD  F    L  S +G +          +A+ 
Sbjct: 140 GVGEPGAVRATGLTTPDPVTLHAAFRGFVDQGFAACALEASSIGIVEHRLDAAEIDVALF 199

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T     HL     +     AK  +           +N DD     L A+  AL + T   
Sbjct: 200 TNFTRDHLDYHGTMAAYWEAKRRL-FAWPGLKAAVINVDDEQGARLAAEPLALDVWTYAV 258

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G ++      R  +         +     ++EV    IG +   N+L  LG +  L   
Sbjct: 259 NGAAR---LVARDVRYVDGGLAFTLHEGDAAVEVRSTLIGEYNVHNLLAVLGGLRALGVA 315

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A   +    P  G     R     G    +   Y   P +++  +  L  ++    G
Sbjct: 316 LADAAAVVPALTPVPG-----RMQRVPGEHVEVVVDYAHTPDALEKVLQALRPLAAARGG 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
           R   V G     G    +    L   ++      V  +  +            +   +  
Sbjct: 371 RLWCVFG----CGGNRDATKRPLMGAIAARLADRVVATSDNPRDEAPCFILSQILAGVAG 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V   E       +  ++   GDVV++  K 
Sbjct: 427 HDEVDVIEDRHEAIAYAVANAAPGDVVLLAGKG 459


>gi|153855352|ref|ZP_01996501.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
 gi|149752172|gb|EDM62103.1| hypothetical protein DORLON_02515 [Dorea longicatena DSM 13814]
          Length = 487

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 145/480 (30%), Gaps = 55/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    Q  V  +  DSR +     F  I G   DGH ++    +KG
Sbjct: 1   MKLTQLLERLEYEVVQGDDQIEVTELINDSRKVTEGSVFVCISGAVSDGHAYVQQVAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  V+V  D+ A      + V  V++   AL   + A       K  +I ITG+ GKTTT
Sbjct: 61  AAAVIVEKDVEA---PEGLTVIKVENTRYALALTSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L  +      IG+    IG                       +    +  + E
Sbjct: 118 TYMVKSILEEVGIKVGLIGTIEAIIGDKSIPANNTTPESYTIQKYFSEMVEEGCECVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G     T  +   I + T +   H+              E              
Sbjct: 178 V--SSQGLKLDRTAGIPFEIGIFTNLGEDHIGP-----NEHKDFNEYKYCKSLLFKQCKI 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283
              +  +             + +FG S+ AD +    K  S   +             +V
Sbjct: 231 GIGNVDDKWFEDIFKDATCKVETFGFSEKADIRATDVKHISRPGYLGVQYHVAGLMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +       V+   KAL           R         FTL+ 
Sbjct: 291 EIDIPGDFSVYNSLTAIAVCRHFGVPVEDIKKALK----VARVKGRIEMIKVSDDFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  ++++ +  L    P        ++      G  S++   ++ EV    +   
Sbjct: 347 D-YAHNAMALESLLDTLRDYHPER------IVTVFGCGGNRSKTRRYEMGEVSGKLSDFT 399

Query: 404 VWLSG----FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+ D +          ++           +       GDV+++  K 
Sbjct: 400 IITSDNPRFEEPQAIIDDIVVGMKKTDGKYITIC-DRKEAIKYAIEHGQPGDVIILAGKG 458


>gi|240014787|ref|ZP_04721700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae DGI18]
 gi|240118600|ref|ZP_04732662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID1]
 gi|240121310|ref|ZP_04734272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae PID24-1]
 gi|268604312|ref|ZP_06138479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
 gi|268588443|gb|EEZ53119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           PID1]
          Length = 492

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/445 (18%), Positives = 146/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|260893417|ref|YP_003239514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
 gi|260865558|gb|ACX52664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ammonifex degensii KC4]
          Length = 492

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 90/456 (19%), Positives = 151/456 (33%), Gaps = 48/456 (10%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G++ DSR +     FFAIKG   DGHDFI  AV +GA  +V    +    G   + +  
Sbjct: 23  RGLAYDSRRVEKGYIFFAIKGLVRDGHDFIPEAVARGAIGIVAERKVEVPPG---VVLEV 79

Query: 88  VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +   AL   A         K  ++ +TG+ GKTTT  +L+       K    IG+   
Sbjct: 80  VPNTRRALAWAAAQFYGHPSRKLHVVGVTGTNGKTTTTHLLSSLYQEQGKKVGLIGTLYV 139

Query: 146 HIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +G                       +   ++  + E+  S  G        V   +AV 
Sbjct: 140 KLGEKAFPGERTTPESLDLQSWLARMVEEGIEVAVMEV--SSHGLALERVTGVAFDVAVF 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +E+    KA +F  L            +  +    +  +L       
Sbjct: 198 TNLTQDHLDFHRDLEDYFQTKARLFTELLGEKPGKKLAVINRDDPYGQRLTSLCRGVEVL 257

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               K  +     ++   E + +     G+ +EV     G     N L  L +       
Sbjct: 258 TYGLKEGEVHALDYELRPEGTRLLASAGGERVEVKLSLPGIFNVYNALAALAVAVGEGMP 317

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D A +ALS      GR            FT++ + Y   P  +   +    +IS    G
Sbjct: 318 LDLAARALSRVQAVPGR---CERIDEGQDFTVLVD-YAHTPDGLLNILRTAREISR---G 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPR 420
           R I V G     G         +   ++      V ++  +         + A+   L +
Sbjct: 371 RVIVVFG----CGGDRDPSKRPVMGRIAGEYADLVVVTSDNPRSEDPVAIMQAIAQGLAQ 426

Query: 421 SI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     E  +       +    GD+V++  K 
Sbjct: 427 VAPPSRYLLIEDREAAIKEAFARARPGDIVILAGKG 462


>gi|160873533|ref|YP_001552849.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS195]
 gi|160859055|gb|ABX47589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS195]
 gi|315265763|gb|ADT92616.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella baltica
           OS678]
          Length = 499

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 150/486 (30%), Gaps = 53/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        + +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFSDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKALDL 56

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110
            A  V+V+TD     G +             V  +   ++ +A            +   +
Sbjct: 57  SAAAVLVHTDDADQHGKVLHSDNAEHGVQIYVFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           I ITG+ GKT+T +++   ++S+ +K        N   G  +       D          
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D      L            +S    + A F  +  K   +     +  
Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++    +G     N+L  L  + +   D+    + +    P  GR +R+  A N 
Sbjct: 297 PEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + +A           L+ +  H  G    V G     G         L    
Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCVGDLWCVFG----CGGDRDKGKRPLMGQA 405

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +            +   L                  + +    GDV+
Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LLAGKG 471


>gi|304440198|ref|ZP_07400088.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371247|gb|EFM24863.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 514

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 141/469 (30%), Gaps = 54/469 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               ++ +   S+ +  +  F AIKG   DGHDFI  AV  GA   +V            
Sbjct: 24  ESVEISSVEFHSKKVKKRTLFVAIKGYRVDGHDFIKDAVASGAVAAIVE-----DFVEED 78

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           I    V +   AL K+A         K  +  IT S GKT+T  M               
Sbjct: 79  ILQIKVKNSRIALAKVASIFFGEPSKKLKVTGITASNGKTSTAFMTKCIYDKAGYNTGIS 138

Query: 141 GSYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+                     +      M       +     S  GE+    +     
Sbjct: 139 GTVYTKYADVEIPSILTTPESKDLQYYFYDMVNKGIDHVIMEVSSSAGELARA-YATDFD 197

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH----- 240
           I     I P H+ N    E     K+ +    +      LN D      L+  +      
Sbjct: 198 IVTFNNITPEHIVNHGSFERYYHVKSRLIRHAKDDCVAILNSDFELINDLRNNTKAQVVT 257

Query: 241 ---ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 ++ I       +  F   K+    +     + ++ +S +V     GY    N +
Sbjct: 258 YSLKNNLEDISIDNLDLSTGFGKFKFIVNRDIKLKGITIKKQSFDVELKVAGYSSVMNAI 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  +   D+DT +  +  F   E R +       +     I + + AN  +++  +
Sbjct: 318 VAITIGLVNGIDLDTILAGIQDFTGVERRFEVIFDEGFK-----IVDDHFANKNNIEVTL 372

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA----------EVLSLYNISHVWLS 407
             LS++         A+ G     G      + ++           E +   +   V   
Sbjct: 373 DTLSKMDYKNLDILYAIRGS---RGADLNEENAEVIASWYERLKPREFIVTLSKDTVTWK 429

Query: 408 GFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   +A  R     +I     + +      +     D D+V+   
Sbjct: 430 DEVTDDELEAFKRVMSKHNIKFVLEDNLKEAVEKVIDGTKDDDLVLFAG 478


>gi|329122138|ref|ZP_08250746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
 gi|327466945|gb|EGF12461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dialister micraerophilus DSM 19965]
          Length = 498

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/486 (15%), Positives = 153/486 (31%), Gaps = 52/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +LL       I       +  I+ DSR +     F  + G H DGH ++  AV+K
Sbjct: 1   MKNLQELLNDSSYIKIIGNVDKDIIDITADSRMVKEGSLFICLSGYHVDGHKYVSEAVEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA  ++    +        + V  V +    + K+A            +IA+TG+ GKTT
Sbjct: 61  GAVAIIAEKKISV---PEGVTVVYVKNTRTVMEKIAPLFFDYPSKSMRMIAVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGM 169
           T  +++  L         IG+ +  IG                   +       +  + M
Sbjct: 118 TTHIISHILKKAGYKTGVIGTIHALIGDEEFETHNTTPDVIDLQRLLYKMKKAKVTHVCM 177

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK------TG 221
             S    +           AV + +   HL     +   A+AKA++F  + +        
Sbjct: 178 EVSSHSLVLGRVEGCEFDTAVFSNLTEDHLDFHKTMINYANAKAKLFSMVSEEGQVKSNK 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD +  ++        +  +++   +++A+ ++   +   + +      + K  
Sbjct: 238 NACINIDDDYSHIMIDAIKDRKLCKLHTSSMNRDAELKVISTEFTGKNTKFICVYKNKEY 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N++  +        D +  IKAL+ F    GR +             
Sbjct: 298 PVTVKLMGRFNVYNIMAAMSAAISEGIDFNFIIKALTDFTNVPGRFELIDEGQEFSVVVD 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +          ++L+       G+ I V G     G         +   ++    
Sbjct: 358 YAHTPDG-------LENILTTAREITTGKIIVVFG----CGGDRDPMKRPIMGRIAAKYS 406

Query: 402 SHVWLSGFHV-------------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               ++  +                +K+   + +                       D+V
Sbjct: 407 DIAIVTSDNPRTEDPNSIVEQVVKGVKENAEKYNCKYKVLVDRRSAIKEAIEIARVNDIV 466

Query: 448 VV--KS 451
           ++  K 
Sbjct: 467 IIAGKG 472


>gi|310779338|ref|YP_003967671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
 gi|309748661|gb|ADO83323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ilyobacter polytropus DSM 2926]
          Length = 478

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 150/470 (31%), Gaps = 50/470 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           ++L  I    +     G  +G+  DSR +   + F A++G  +DGH FI  AV+ GA  V
Sbjct: 3   EILNGIDYKILKKFETGPFSGMEYDSRKVKKGDIFVALEGAAFDGHKFIDMAVENGASAV 62

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + + ++  +     I    V ++   L  +A       +  +  +  +     T     +
Sbjct: 63  IGSKEIEVNH---DITYIVVKNLRQKLGVIASNFYKWPQKKLEIVGITGTNGKTTTTYLL 119

Query: 129 ALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHL 172
                +   + IG+    +G                  +    +   + + I E+  SH 
Sbjct: 120 EQILGEDKVSRIGTVEYKVGNEIIPAPNTTPESLDLIKICRKSVDRGIKYLIMEV-SSHA 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            E+  +  +    +   T + P HL     +EE  SAK ++F   +       N DD + 
Sbjct: 179 LEMGRVEMI-DFDVTAFTNLTPEHLDYHKDMEEYFSAKRKLFYKTKNKENTVFNTDDFYG 237

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + L  +   +           ++ D          +   +E+  +    ++     G   
Sbjct: 238 KRLFDEFGGISYGI-------ESGDLNASMISHSLKTQEIELSFKEFQKKINIKLQGKFN 290

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  +G+   L   ++     L       GR +      N          Y     +
Sbjct: 291 VYNLLTAVGVAIRLGLSLEEITDRLEKLESAPGRFECIEAGQNFMVVVD----YAHTADA 346

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  +S L++I          ++      G+   S    +AE     +   V ++  +  
Sbjct: 347 LENILSALNEIKIEK------IITVFGCGGDRDLSKRKPMAETAEKLS-DIVIVTSDNPR 399

Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   L            +             D+V++  K 
Sbjct: 400 TEDPVKILDEVSKGLSSLKDSLLEIDREKAIEKAVGMAKKNDIVLIAGKG 449


>gi|292669648|ref|ZP_06603074.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
 gi|292648445|gb|EFF66417.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Selenomonas noxia ATCC
           43541]
          Length = 496

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/480 (17%), Positives = 137/480 (28%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L   + G  I       +  I  DSR  A    F  I G H D H FI +A + 
Sbjct: 2   MKRLEELADLVPGARIAGDKCTEITSIERDSRRAAEGALFVCINGVHVDAHSFIPNAARA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+   D VA      I V  V D+  AL+ +             +I ITG+ GKTT
Sbjct: 62  GARAVLTERDKVAVPP--GISVLHVPDLQEALDLIVPYFYDYPARAMRVIGITGTNGKTT 119

Query: 122 TKEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--- 169
           T  ++   L             +       ++     P  +    +  +     +     
Sbjct: 120 TSYLVRAMLRHAGRRVGLIGTIQIMMEDDVFSTANTTPDVIVMQQLLAEMRTRGMDAVVM 179

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     +    AV T +   HL     +E  A AKA +F+ + + G      
Sbjct: 180 EVSSHALDQGRVAGIEFDTAVFTNLTQDHLDYHKTMENYARAKARLFDLVSEQGVKEGKT 239

Query: 228 DDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVH 285
                +   AK           ++G    A    RK +   +           +   V  
Sbjct: 240 AILNADDAAAKMMRAHTHCPLITYGVDMPAALTARKIRLGQDGMELTIAYAGAELPAVQT 299

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N+L   G              AL+ F    GR +  R   +         +
Sbjct: 300 GITGLFNVYNVLAAAGAALAEQVTASDITAALAAFSGVPGRFELVRAGQDFSVIVDYAHT 359

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          +VL        GR I V G     G         +   ++      + 
Sbjct: 360 PDG-------MENVLRTARAVTTGRIITVFG----CGGDRDRTKRPIMGRIAAELGDVIV 408

Query: 406 LSG-----FHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+          A+ D +                            +   GD VV+  K 
Sbjct: 409 LTSDNPRTEDPAAILDEVEAGVLPAIGGKPYEKLVDRRTAIFHAVQTARAGDTVVILGKG 468


>gi|254509130|ref|ZP_05121230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
 gi|219547927|gb|EED24952.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio parahaemolyticus 16]
          Length = 493

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/479 (14%), Positives = 138/479 (28%), Gaps = 46/479 (9%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L T   L   +   +        ++ + +DSR I     F AIKG   DG  FI  A+
Sbjct: 5   IALSTL--LAPWVDISAH-EFHDMAISNLELDSRKITEGTTFVAIKGHAVDGRRFIESAI 61

Query: 62  QKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            +GA  V+                 +PV  +D +   L+ LA          ++ +TG+ 
Sbjct: 62  NRGANAVIAQSCERHPQGVCSTESRVPVIYIDQLDRNLSALASRLYTLGDMKLVGVTGTN 121

Query: 118 GKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG- 163
           GKTT  +++   L+             +                + +    + ++     
Sbjct: 122 GKTTITQIIAQWLNLVGKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLVSIESQGAD 181

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S  G ++     +     V T ++  HL     +EE             + G  
Sbjct: 182 FTAMEISSHGLVQGRVKTLPFAAGVFTNLSRDHLDYHGTMEEY-ELAKRSLFTEHQCGKA 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD        +       ++     +         +        +    +    + 
Sbjct: 241 IINVDDQVGAKWAEQLPDAIQVSLQPLSSTNAVFASQVDYS--ESGISLAFSGRFGDGQF 298

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A N+L+    +  L  D    I+      P  GR + +             
Sbjct: 299 SVPLIGEFNANNVLVAFTTLLALGIDKQQLIETAKQLTPVIGRMELFHNEGKAKVVVDYA 358

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L  +  H  G+  A+ G     G    +    +   +      H
Sbjct: 359 HTPDA-------LEKALMALRVHCHGKLWAIFG----CGGDRDTGKRPMMAEIGERLADH 407

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+  +            +   +                 +  ++    D++++  K 
Sbjct: 408 VVLADDNPRSESPSAIVDDMLAGMRNPERAIVEHDRFKALQYALANSEVHDIILLAGKG 466


>gi|332557533|ref|ZP_08411855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
 gi|332275245|gb|EGJ20560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides WS8N]
          Length = 495

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/467 (17%), Positives = 147/467 (31%), Gaps = 36/467 (7%)

Query: 11  LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+     G       V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPAGGRGGDIAVTGLAVDSRQVRPGTLFAALPGSRSHGASFVPAALAAGATAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A            +   +D    L   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALAGSGAALVLAEDPRQTLAGAAALWFGRQPATVVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172
                +++      IG+                 P+TL R+  +          +  S  
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLAEAAEAGVTHAAMEASSH 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T     HL      E   +AKA +F  +       +   D   
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTAVVNLDDPR 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               A       + +   G   +AD +L   +  +    +    QG+        IG   
Sbjct: 248 GPEIAALARARAQRVIGTGFHADADLRLLSQRFDATGQDLRFSWQGEVHLARLPLIGGFQ 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+ +   +        +      S      GR +      N      +D ++  +  +
Sbjct: 308 AWNVAVAASLAIGAGDAPERVFATFSRLQGVRGRMQLAATRQNGA-SVFVDYAHTPDALA 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  GR + V G     G         L    +  +   ++++     
Sbjct: 367 T-----ALKALRPHVMGRIVVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417

Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 418 TEDPAAIRRAILGACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|332160407|ref|YP_004296984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664637|gb|ADZ41281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
          Length = 495

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 139/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL           P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV   D VA   S      +PV  + ++   L+KLA     +  A +  +  +     
Sbjct: 61  AAVVAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     +    AV T ++  HL     +    +AK  +F   +    I  
Sbjct: 181 AMEVSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +     N  +    +       + +         ++ 
Sbjct: 241 ADDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   + A S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLGYPLTQLLAAASHLQPVCGRMEVFNAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L+    H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALAAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  + H                     DVV++  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467


>gi|325679068|ref|ZP_08158662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
 gi|324109192|gb|EGC03414.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Ruminococcus albus 8]
          Length = 484

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/469 (17%), Positives = 144/469 (30%), Gaps = 53/469 (11%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSR-SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           + I+G +   +P   ++GI+ D+R  +     F  IKG  +DGHD     + KG  +VV 
Sbjct: 11  ELIKGVAETSLPDMEISGITSDTRAEVKAGGMFVCIKGKTFDGHDAAQQMLDKGCAVVVC 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128
             D+             V D   A   L  A       +  +I +TG+ GKTT   ++  
Sbjct: 71  ERDLGLE------RQIVVSDTRAAFPMLCAAWFGHPERELELIGVTGTNGKTTITTVIKK 124

Query: 129 ALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGE 174
            LS        IG+  N IG                  L R   D       + +S  G 
Sbjct: 125 VLSGFGCKVGLIGTCQNEIGEEIIPTARTTPEPYDLFELFRRMADAGCKYTVMEVSSQGL 184

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            +         + V T +   HL     +E    AK  +F+  +       +   +  + 
Sbjct: 185 EQKRVQGCHFKVGVFTNLTQDHLDVHGTMENYYQAKKMLFDISD-------SAIINIDDE 237

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +          S+  + +ADF  +     +               V  +  G     
Sbjct: 238 YGRRYAKEIPCPYKSYSVNGSADFMAQDVMLGTAGVKYVFDDGRVKKNVSFNMPGLFNVS 297

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +  + +L       I+         GR            FT+I +  +   A   
Sbjct: 298 NSLAVIACMEVLGYTPCQTIREFEKIQGVRGR---AEIVPTGRDFTVICDYAHTPDA--- 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
             I+VLS I    +G+   + G     G              +  +   + ++  +    
Sbjct: 352 -LINVLSAIKEGAKGKVKCLFG----CGGNRDRTKRAPMAAAAAEHADFLIVTSDNPRNE 406

Query: 413 -------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + L  +               +   +    D++V+  K 
Sbjct: 407 DPDEIINDVMEGLKGKDTPYVRITDRREAIHWAVKNAEKDDIIVLAGKG 455


>gi|225549793|ref|ZP_03770757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
 gi|225369601|gb|EEG99050.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 118a]
          Length = 508

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     + D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|330813729|ref|YP_004357968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486824|gb|AEA81229.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 265

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/242 (35%), Positives = 130/242 (53%), Gaps = 3/242 (1%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           DL +      +    +  +N ++I+S+ +  +  FFAIKG + DGH F+   ++K + ++
Sbjct: 7   DLQKIFNKEILNK--KININNVTINSKEVTAKSIFFAIKGKNTDGHYFVKEVIKKRSKVI 64

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV  +      +       V   + +L   A   RL S+   + ITGS GKTT K ML+ 
Sbjct: 65  VV-KNNFKVPKNNLHKFIKVRSPIRSLENFAKYQRLTSQGKFVGITGSFGKTTLKYMLSF 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    KT++   S+NNH G+PL+L+  P +  F IFELGMS   EI  L+ ++RP I V
Sbjct: 124 FLEQYGKTFSSPKSFNNHFGLPLSLSNTPKNSQFNIFELGMSSSREIDKLSQILRPDIGV 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I PAHL NF  ++ +  AKAEI   +++ G I LN DD +F  L   ++   +K I 
Sbjct: 184 ITNIGPAHLKNFKNLKAVCLAKAEIMNHIQENGYIVLNKDDFYFNTLFKIANNKKLKIIT 243

Query: 249 SF 250
             
Sbjct: 244 FS 245


>gi|304404005|ref|ZP_07385667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346983|gb|EFM12815.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus
           curdlanolyticus YK9]
          Length = 495

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 155/482 (32%), Gaps = 51/482 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T +++   I    +       + G++ DSRS+ P   FF + G   DGHDF   A   G
Sbjct: 1   MTLNEIANWILAAKLEGDGNVQITGLNNDSRSVQPGTLFFCLPGYKVDGHDFAAAAASNG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +VV   +      ++IP   V D   A+  ++         K  +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----DVAIPQLIVKDSRLAMAIISDRYYDHPSQKLRLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---GVPL-----------TLARMPVDVDFGIFELG 168
             ++   LS   ++   IG+         +P+                  +       + 
Sbjct: 116 TYLIERILSDAGQSAGVIGTIETRYAGNTLPMSGTTPGALELQQYLAAMAEAGVDSCAME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IF 224
           +S     +  T   R  I V T +   HL     +E+ A+AK+ +F  L  T +      
Sbjct: 176 VSSHALDQGRTWGCRFRIGVFTNLTQDHLDYHGTMEKYAAAKSLLFSRLGNTYSEAEAER 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +             I ++G  + AD +    +  S  +   ++      ++ 
Sbjct: 236 SYAVLNADDSASDLFANAAAVEILTYGIDREADVRASDIRITSRGTTFRLETFRGGADIS 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L    +  +    ++   ++L       GR +                
Sbjct: 296 IRMVGKFNVYNALAATSVALLEGISIEAIKQSLEALPGVPGRVESVDAGQPYAVIVDYAH 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +          +VL  +    EGR I V G     G         +   ++       
Sbjct: 356 TPDG-------LENVLRTVKEFVEGRIICVFG----CGGDRDRTKRPIMGRIAAKYADIC 404

Query: 405 WLSGFHVL---------ALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +            +++ L      S      E               GDVV++  
Sbjct: 405 VITSDNPRSENPHAILLDVEEGLKADGIPSNRYLLIEDRRHAIEKAVEMASPGDVVLIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|323342114|ref|ZP_08082347.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464539|gb|EFY09732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 488

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 153/462 (33%), Gaps = 43/462 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +       ++ + +DSR       FF +KG   DGH F   AV+ GA  VV + D+  
Sbjct: 5   KLVNTELDCDIDHLVLDSRDRVKNGMFFCLKGLTVDGHQFAKQAVENGAVAVVHSDDIDV 64

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   I    VDDV+  L+++             +  ITG+ GK+TT   +   L    
Sbjct: 65  IEG---IVYIRVDDVMTELHRVTDVFYNSPSTNMYVYGITGTNGKSTTMLTVRNILRRFG 121

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD------------FGIFELG--MSHLGEIRFLTH 180
                IG+ +           +                  G+ E+   +S  G       
Sbjct: 122 VNAGYIGTISVEYNEHKFAPSLTTPDIVELQSYLQDMRLEGVEEVCLEVSSQGLALRRVE 181

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A  T +   HL     +E    AK  +F+ L+ +G + LN D+ + E+L+ + +
Sbjct: 182 SIDFDNASFTNLTHDHLDYHKTMENYFEAKKMLFDNLKPSGFMVLNIDNEYGEILQNQDY 241

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +  +        +  A ++ +      + +   +  +GK+  VV + +      NML  +
Sbjct: 242 SNVVTYGV---DNPKAHYRAKDIVLHEDFTEFTLIHEGKTYPVVTNFVAIFNVYNMLNVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I+      ++  I  L      +GR                   +   P SMK     +
Sbjct: 299 AILHQRGYALEKIIPELKDIEHVDGRQTMVNKGQPFRVIVD----FGHAPDSMKNVYEFV 354

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
                 G      V G     G  +      +   ++     HV ++             
Sbjct: 355 RSTQDEGARLIT-VFGAAG--GRDTAK--RPIMGRVASMYCDHVIITEHDNRDERVVDIT 409

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451
             +   +  + +  +               + GD VV++ K 
Sbjct: 410 QDIITGIESN-NYEFVPNRTDAIEKALKMALPGDTVVLIGKG 450


>gi|224532859|ref|ZP_03673474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
 gi|224512248|gb|EEF82634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi WI91-23]
          Length = 508

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTNSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|119383338|ref|YP_914394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
 gi|119373105|gb|ABL68698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Paracoccus denitrificans PD1222]
          Length = 489

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 149/454 (32%), Gaps = 36/454 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA----SIG 79
              V G+++DSR + P   F A+ G    G +FI +A+++GAG ++ +          + 
Sbjct: 15  DPEVTGLAVDSRQVRPGHLFAALPGSATHGGEFIQYALRQGAGAILTDRKGAEIAAAELV 74

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK---- 135
                +   +D   AL   A         T++A+TG+ GKT+          ++      
Sbjct: 75  GADAALVVAEDPRAALAGAAALWFAAQPETMVAVTGTSGKTSVASFTRQIWQALGHKAIS 134

Query: 136 ------TYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHI 186
                          +    P+TL R+  +          +  S  G  +     VR   
Sbjct: 135 LGTMGVQGDYQAKLAHTTPEPITLHRVLAEAAAAGVTHAAMEASSHGLDQRRLDGVRLKA 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T  +  HL      +E  +AKA +F+ + + G   +   D       A+        
Sbjct: 195 GAFTNFSQDHLDYHKDFDEYFAAKALLFDHILEEGAGAVINIDDPRGRQMAQIAGERGLK 254

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + GK + AD ++   +  +    +     G++  V    IG   A+N+L   G+    
Sbjct: 255 LTTIGKDERADLRILGQRYDATGQDLRFGFHGQAHLVRLALIGGFQAENVLAAAGLAIAA 314

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    I+ L       GR          G    +D S+     +       L  + PH
Sbjct: 315 GDEAPRVIETLPGLTTVRGR-MELAAVRENGAAVFVDYSHKPGALAS-----ALQSLRPH 368

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA--LP 419
             GR + V G     G         L    +      V+++          A++      
Sbjct: 369 VMGRIVVVFGA----GGDRDRLKRPLMGEAARQFADVVYVTDDNPRSEDPAAIRAEVMAG 424

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          L    +L  GD +++  K 
Sbjct: 425 AGPDAIEVGDRAEAILRGVDALQPGDALLIAGKG 458


>gi|240113340|ref|ZP_04727830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae MS11]
 gi|268599414|ref|ZP_06133581.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
 gi|268583545|gb|EEZ48221.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           MS11]
          Length = 492

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEETAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL+           +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELIGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPHDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|227501192|ref|ZP_03931241.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227216593|gb|EEI81997.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 483

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 153/475 (32%), Gaps = 53/475 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +F D++  I            +  I+ DSR      AF AIKG   DGH +I  A++K
Sbjct: 7   LISFEDIISHISYIDYKKANDIAIEAITNDSRKANKATAFVAIKGSLSDGHTYIASAIKK 66

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           GA L++   D+        I    V+D   AL +++            ++A+TGS GKTT
Sbjct: 67  GASLIIHTEDV---TCEEGISYIRVNDPRKALAQISNLIYDFPSKKMELVAVTGSNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIF-----EL 167
           T  ++   +  I    A IG+ N H+G          P       +             L
Sbjct: 124 TSRLIAFLMGEIFGDSASIGTNNAHVGDDIIPTSNTTPDITEVNRILAKCLEKNIHHLAL 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +   + +     + T ++  HL     ++    AK  +FE  + T     + 
Sbjct: 184 EASSHGLDQKRLYGLDIAYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKNTLANIDDP 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + L  K          +F   + +     +     +    ++  + + +E V + 
Sbjct: 244 YGKRAKELFPK--------TITFAIDEESADYRAEDIVKKDG---KISFKIRGVEFVLNK 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I  +   N L  +  ++ + A ++   +A   F   + R +     L          +  
Sbjct: 293 IANYEIYNTLAAVACLNQMGASMEDIGEAFKKFKGIKSRFEYIENDLGINIILDFAHT-- 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                           S       IAV G     G+ +  F   +      Y +  V  +
Sbjct: 351 -------PRAYEALFESVPKGSNIIAVFGI---NGDRNSEFRRLIGNACGKYKVFSVLTT 400

Query: 408 GFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   D +   I V            +       +       GD V +  K 
Sbjct: 401 DDPKFDNVDHINEEIIVGLDEYKADYVIRKERKDAMRYAIKMAKPGDYVFLLGKG 455


>gi|62184995|ref|YP_219780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydophila abortus S26/3]
 gi|81312837|sp|Q5L6B2|MURE_CHLAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62148062|emb|CAH63816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydophila abortus S26/3]
          Length = 483

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 152/472 (32%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL   +    G +    V  ++ DSR++   + F A +G H DG+DF   AV+ G
Sbjct: 1   MNLKELLHNTKAKIYGKISSVEVRNLTRDSRNVGVGDIFIAKQGKHCDGNDFSHLAVENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A  V  +         L +      D+      LA            ++ ITG+ GKTT 
Sbjct: 61  AIAVASS----IYNPFLPVVQIISSDLPRLEADLAAKYYGHPSQKLCVVGITGTNGKTTV 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++ +   +  K    IG+  + +G               + +              + 
Sbjct: 117 SHLIKLLFDACDKPAGLIGTIEHILGNSRIQDGYTTPESCLLQKYLAKMVKSHLSAAVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +G        V   + V+T +   HL   S  EE   AK ++F  L  +G   +N D
Sbjct: 177 VSSIGLAVNRLANVDFDVGVLTNLTLDHLDFHSSFEEYKQAKLKLFSMLPSSGLAVVNND 236

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                     + A  I    ++G  ++AD+Q    +     +  ++  +G++       I
Sbjct: 237 LCDAAQFIEATQAQPI----TYGIEQHADYQASHVRFSPFGTDFDLLYKGETFACYSPLI 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L  + +           + ++               +     +      Y  
Sbjct: 293 GQHNIYNVLAAIAVTHQRLRCDLPHLISVIANVGAPRGRLEPIFSGPCPIYID----YAH 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++      L  + P  +GR I V G     G         +   +       V  + 
Sbjct: 349 TPDALDNVCQTLQALLPQ-DGRLIVVFG----CGGDRDQSKRKIMAQVVEKYGFAVVTTD 403

Query: 408 ---GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
              G     + + +                    +  S   D D+V+V  K 
Sbjct: 404 NPRGEDPEKIINEICSGFLKRNFSIEIDRKQAITYALSIASDRDIVLVAGKG 455


>gi|299536847|ref|ZP_07050154.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727671|gb|EFI68239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 730

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/379 (21%), Positives = 163/379 (43%), Gaps = 15/379 (3%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            + +     +    IIAITGS GKTTTK  +   LS     +     +N           
Sbjct: 360 QQKSKQVEAKKTLPIIAITGSAGKTTTKAFIGSILSKKWNVFESKDYWNTTEHTKKHKEE 419

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
           +       + E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+ 
Sbjct: 420 INDSHQAVVLEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELI 479

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G+++ G + +N DD     L+ +     I    + G  K AD++    +        ++
Sbjct: 480 HGMDQQGLLIVNQDDDNSRYLETQQFKGKI---ITVGIKKEADYRAYDLQYKDVGMSFKM 536

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +L G+ +E+    +G H   N L  + +  +L          L+   P            
Sbjct: 537 KLHGQEIELYIPILGEHHVYNALNAVAVADLLGFSPLDIQSGLNFKKPPRRLTIYN---- 592

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +   T+ID++ +++P  ++AA+ VL+ I+ + +   +A++G M E+G L +  +  + E
Sbjct: 593 CRDDITVIDDTVHSHPQGVRAALDVLTNIATNRK---VAIIGQMRELGVLREEEYRKVGE 649

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +    I      GF    + +A          VH+    D L + ++  +   D ++VK
Sbjct: 650 YVYDIGIDEFITYGFRTDEMSNAAIAKGMDPSRVHHFINKDQLHVLLEKLIKPHDTILVK 709

Query: 451 SSNSCGFYRLINLLLEEFP 469
            ++    +  +  L + F 
Sbjct: 710 GASKTNMFETVKFLDQTFK 728


>gi|182677680|ref|YP_001831826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633563|gb|ACB94337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 486

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/451 (17%), Positives = 142/451 (31%), Gaps = 39/451 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + G++ DSR +A  + FFA+ G   DG  +   AV++GA  VV      AS+   +  +
Sbjct: 21  EIAGLACDSRLVAKDQVFFAVPGTKADGLTYAPEAVRRGALAVVTEQ--SASVPFETAAL 78

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--------- 136
             V DV  AL   +     R   T++A+TG+ GKT+         +S+            
Sbjct: 79  VKVADVRSALAIASARFYARQPETVVAVTGTSGKTSVAAFARQIWASLGFKAASVGTLGV 138

Query: 137 --YACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITT 191
                          P++L R   +    G+    L  S  G  +     VR   A  T 
Sbjct: 139 VAPDGASYGGLTTPDPISLHRTLDELAGAGVTHLALEASSHGLDQHRLDYVRLKAAGFTN 198

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E    AK  +F  +       +   DS                ++S G
Sbjct: 199 LSRDHLDYHPTLEAYFQAKLLLFTHVLPADGTVVVDADSSAGHEVIDVAKARGLKVFSLG 258

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                   L + +  +  + + +   GK   +         +      L    +  +   
Sbjct: 259 -FAGETLHLLEARPEAAATLLRLTFAGKDWALRL---PLVGSFQAANALMAAGLCISTGA 314

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                 +     EG   R      +   ++  +  +   A        L  + P  + R 
Sbjct: 315 APDAVFAALERLEGAPGRLEKVGERRGASIFVDYAHKPDA----LEKALQALRPFTQKRL 370

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPRSI 422
           I + G     G    +    L   ++     HV ++  +           A+        
Sbjct: 371 IVIFG----CGGDRDAGKRPLMGEIAARLADHVIVTDDNPRSEDPDLIRKAILQGAGSGP 426

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H+      +         L  GD++++  K 
Sbjct: 427 HIREIGDREAAIKSGIGMLEPGDLLLIAGKG 457


>gi|168040796|ref|XP_001772879.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880172|dbj|BAE45858.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|76880184|dbj|BAE45863.1| MurE synthetase [Physcomitrella patens subsp. patens]
 gi|162675790|gb|EDQ62281.1| MurE synthetase [Physcomitrella patens subsp. patens]
          Length = 606

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/497 (16%), Positives = 152/497 (30%), Gaps = 63/497 (12%)

Query: 5   WTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   LL    +   S        + GI  DSR +AP + F  +KG   DGH F + A++
Sbjct: 95  MTLRKLLNEARVSPLSTEGDLDVEITGIQQDSRLVAPGDLFVCVKGLKSDGHQFAIQAIE 154

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKT 120
           KGA  ++   ++  + G  +     V+D    L+ LA            ++ ITG+ GKT
Sbjct: 155 KGAVAIISLMEVSLTEGLKAA--VIVEDTSVILSALAGVIYGHPSKKLSVVGITGTNGKT 212

Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165
           TT  +L     ++          +               P       L    V     + 
Sbjct: 213 TTSYLLQSLYEAMGLQVGLLGTIQYYIGGKNKLEADHTTPEALNLQNLMASMVQNGTEVC 272

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G +      +   +AV T +   H+      EE   AK  +F  +        
Sbjct: 273 IMEVSSHGLVLGRCEDIEFDVAVFTNLTRDHMDFHKTEEEYRRAKGLLFAKMVDPERQRK 332

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             +     +    S       + +FG    + D      K    +S + V+     +E+ 
Sbjct: 333 VVNIDDPNVSYFVSQGNQDVPVVTFGMGDKSADVYPLAVKLSLVESEVLVRTPQGDVEIS 392

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N+L  + +   + A ++  ++ +       GR +                
Sbjct: 393 SRLLGRHNVYNILTAVAVGIAVGAPLEDIVRGIEAVDAVPGRCELIDEGQTFAVLVDYAH 452

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A          +L  +   G  R I VLG     G         +   ++       
Sbjct: 453 TPDA-------VARLLDTVRECGPKRIITVLG----CGGDRDKGKRPIMAKIAADKSDVC 501

Query: 405 WL--------------------SGFHVLALKD--------ALPRSIHVHYSETMDGLFLF 436
            +                     G+ +              LP    +   E        
Sbjct: 502 IITSDNPRTEKPLDIIDDMLAGVGWSMEQYCKWEEDSSYPLLPNGHRLFCQEIRSKAIRA 561

Query: 437 IQSSLVDGDVVVV--KS 451
             +   +GD VV+  K 
Sbjct: 562 AVAMAEEGDAVVIAGKG 578


>gi|37678793|ref|NP_933402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio vulnificus YJ016]
 gi|37197534|dbj|BAC93373.1| UDP-N-acetylmuramyl tripeptide synthase [Vibrio vulnificus YJ016]
          Length = 515

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 151/462 (32%), Gaps = 46/462 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
            +    V  + +DSR +   + F AI G   DG  +I  A+++GA  V+  +      G 
Sbjct: 41  ELADITVQSLELDSRQVKQGDTFVAIVGHVVDGRQYIEKAIEQGANAVIAQSCQQYPPGL 100

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                ++ +  ++ +   L++LA       + ++I +TG+ GKTT  +++   L    + 
Sbjct: 101 VRYQQNVVIVYLEKLDEKLSQLAGRLYQHPEMSLIGVTGTNGKTTITQLIAQWLELAGQK 160

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
            A +G+  N  G    L          +                  L +S  G ++    
Sbjct: 161 AAVMGTTGN--GFLNALQPAANTTGNAVEIQKTLADLQQQGAKATALEVSSHGLVQGRVK 218

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    V T ++  HL     +E  A AK  +F   +    I    D+   +  +    
Sbjct: 219 ALQFAAGVFTNLSRDHLDYHGTMEAYAKAKMTLFTEHQCQHAIINLDDEVGAQWFQELQQ 278

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +G+    S      +   L        +S + ++  G   +   H           + L
Sbjct: 279 GVGV----SLFPQDASVKALWASSVAYAESGITIEFDGCFGQGRLHAPLIGEFNATNLLL 334

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + ++L   VD      S    +   G+     +N     ++D ++  +          L
Sbjct: 335 ALATLLALGVDKQALLDSAASLRPVLGRMELFQVNSKAKVVVDYAHTPDALE-----KAL 389

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
             +  H  G   A+ G     G         +   ++     HV L+  +          
Sbjct: 390 QALRVHCTGHLWAIFG----CGGDRDKGKRPMMAEIAERLADHVVLTDDNPRSEDPAMIV 445

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L R               +   +    D++++  K 
Sbjct: 446 QDMLAGLTRGDSAVVEHDRFSALQYALDNAQADDIILLAGKG 487


>gi|217963815|ref|YP_002349493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333085|gb|ACK38879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 293

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 105/286 (36%), Gaps = 23/286 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI  ++        ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVYTGEASETIEISHIAQDSRKVKPGTLFICIDGELVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQL-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++   +     +AV   ++  HL     ++E A+AK+ +F  L  +        
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMDEYANAKSLLFAQLGNSYHTSNPKM 235

Query: 229 DSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                      +        + +FG  + ADF+    +  S  S  
Sbjct: 236 AVLNADDAESVRMQTATAAHVITFGIKQQADFKASNIQITSHGSTF 281


>gi|284048643|ref|YP_003398982.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952864|gb|ADB47667.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidaminococcus
           fermentans DSM 20731]
          Length = 497

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              D+++ + G  + G      V+ ++IDSR+  P   F  IKG + DGH ++  A  +G
Sbjct: 4   NLQDVIRQLPGAVVTGNGADRTVSDLTIDSRTAGPGSLFICIKGVNTDGHKYVAKAAAQG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   +   +         + V  V     A+  LA         K  +I +TG+ GKTTT
Sbjct: 64  AVAALTEQETEV---PDGMTVIRVPSTQEAVKTLAPWFYDWPARKMRMIGVTGTNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFE 166
             +L   L+        IG+ N  IG                  +    +    D  + E
Sbjct: 121 TNILRTLLTRTGHKVGLIGTINVMIGDEVRTSHNTTPDVVDLQKMLYEMVENHCDTCVME 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH   +  +  +     AV+T I   HL     +E    AKA +F  L +       
Sbjct: 181 V-SSHALALDRVAGI-EYDTAVLTNITQDHLDFHKTMENYREAKALLFTRLHEGTKPNKT 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A         I ++GK K+ D     +   +    + +Q     M++  H
Sbjct: 239 AVFNSDDPSSAIIMPRVKTKIMTYGKGKDNDVYPLTFHVAASHMELNLQTPVGEMDLKLH 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N++ ++          +  I+ L  F    GR +                + 
Sbjct: 299 ITGEFNVYNVMGSICAAIAEGLTREDIIRGLDDFAGVPGRFQLIHAGQPFTVVVDYAHTP 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL       +G+   V G     G         +   ++L       +
Sbjct: 359 DG-------LENVLKTARQITKGKLWVVFGA----GGDRDRKKRPIMGKIALDLADIAVV 407

Query: 407 SGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +         +  +++ L   P    +H          ++ +     DVV++  K 
Sbjct: 408 TSDNPRSEDPEAIIRDIEEGLKDNPEGKEIHKITDRREAIEYVMAHAKPDDVVMIAGKG 466


>gi|215427536|ref|ZP_03425455.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T92]
 gi|289750754|ref|ZP_06510132.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
 gi|289691341|gb|EFD58770.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Mycobacterium tuberculosis T92]
          Length = 391

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/381 (27%), Positives = 160/381 (41%), Gaps = 26/381 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 9   GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 68

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 69  MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 128

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 129 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 185

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L    +     A V+    AL+   P      R +        T+ID++Y
Sbjct: 186 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAY 243

Query: 347 NANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           NANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +    ++S +
Sbjct: 244 NANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRL 303

Query: 405 WLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            + G                      A  D       V+     D     +++ L  GDV
Sbjct: 304 VVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRAELRPGDV 362

Query: 447 VVVKSSNSCGFYRLINLLLEE 467
           V+VK+SN+ G   + + L+ +
Sbjct: 363 VLVKASNAAGLGAVADALVAD 383


>gi|15594546|ref|NP_212335.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218249248|ref|YP_002374728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321519|ref|ZP_03797045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
 gi|3914073|sp|O51219|MURE_BORBU RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|2688092|gb|AAC66588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Borrelia burgdorferi B31]
 gi|218164436|gb|ACK74497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232708|gb|EEH31461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi Bol26]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|225548558|ref|ZP_03769606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
 gi|225370821|gb|EEH00256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 94a]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      IK  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     + D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDRLDCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +   +    + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|330686158|gb|EGG97776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU121]
          Length = 494

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 152/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             ++VVN +      +  +    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CSIIVVNREQD---LNGDVTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   + E      + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +         
Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G   +A F+    ++  +    E      S +V    +
Sbjct: 238 LNNDDDFSEYLASVTPYEVFTYGIDNDAQFRAINVEESLQGVKFEFDTPFGSYQVESPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V    A  +  I+A+    P           L     +L  +    
Sbjct: 298 GKFNISNIMAAMIAVWSKGATFEEIIEAVKSLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   E               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHSNYVEFEDRAEGIKHAIDVAEPGDTVVL-ASKG 458


>gi|223889236|ref|ZP_03623824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885269|gb|EEF56371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 64b]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 144/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      IK  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDII 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|282882104|ref|ZP_06290745.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
 gi|281298134|gb|EFA90589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus lacrimalis 315-B]
          Length = 509

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 163/491 (33%), Gaps = 62/491 (12%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L+ I+   I         ++ +S +S +I     F AIKG   DGH +I +A  
Sbjct: 1   MKLREILKDIEIIDIRGKIDLDTEISNMSYNSINIEASGLFVAIKGKITDGHKYIKNAKN 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120
            GA + VV          + IP   VD+   +L  LA            +I IT + GKT
Sbjct: 61  HGAIVAVVE-----DFKEVYIPQIKVDNTRKSLADLAKNFYKDPSKDLKVIGITATNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI---------GVP-------LTLARMPVDVDFGI 164
           TT  ML   LS  K     IG+                P            +  ++   +
Sbjct: 116 TTSFMLKKILSENKINTGIIGTVYTKFADVNIPSILTTPESLELQKYFKEMLDKNISHVV 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S    +R         I     ++  H+      E     K++I    +K     
Sbjct: 176 MEVSSSAQQMLRVNNI--DFDIVSFGNLSREHIDQHGSFENYFRDKSKIILNAKKGSFAL 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ------LRKWKQCSEQSWMEVQLQG 278
           LN D+ +   LK K+ A  +        S     +        K+     +   E+ L+ 
Sbjct: 234 LNMDNEYIASLKEKTKASVLTISMENLDSDFGISKLDLSTGFGKFMFHVNRDIKEINLKK 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +S EV    +GY    N ++ + +  IL  D +  + AL  F   E      R  L    
Sbjct: 294 QSFEVEMGSVGYASVMNGVIAISLALILQVDKNIILNALENFKGVER-----RFELIYDE 348

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---- 394
              + + + AN  ++   ++ LSQ++        A+       G      +  + E    
Sbjct: 349 KFKVLDDHFANEKNIDVTMTTLSQMNYKNLHILYAI------RGNRGVELNRAVDERLCF 402

Query: 395 VLSLYNISHVWL-------------SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS 440
            L     S ++              +        + L   +I   Y   +      I   
Sbjct: 403 WLKKLKASTLFTTFSEDTVKQKDKVTQEEKAVYAEVLKNNNIETVYFNELKDGINNILKK 462

Query: 441 LVDGDVVVVKS 451
              GD+V++  
Sbjct: 463 AQSGDIVLLAG 473


>gi|221217531|ref|ZP_03589001.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534060|ref|ZP_03674643.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
 gi|221192594|gb|EEE18811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512759|gb|EEF83127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi CA-11.2a]
          Length = 508

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/475 (15%), Positives = 143/475 (30%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           VV + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  VVCSRDV--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      IK  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAIKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     + D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNNDIQDIVDKLDCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +   +    + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENQDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|163847893|ref|YP_001635937.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222525769|ref|YP_002570240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
 gi|163669182|gb|ABY35548.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449648|gb|ACM53914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus sp.
           Y-400-fl]
          Length = 509

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/435 (21%), Positives = 145/435 (33%), Gaps = 38/435 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   LL  +    +   P   V  ++ DSR + P   F AI+G H DGH FI  A
Sbjct: 1   MTA-KTLASLLNNVAVQRLIGEPLVPVQSLTYDSRRVEPGSLFVAIRGQHSDGHQFIDQA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           + +GA  VVV+             V    D   AL  LA A         T I ITG+ G
Sbjct: 60  IARGAVAVVVDQRYWDERPVAVPVVVV-ADSRVALAPLAAAFYDYPGRELTTIGITGTKG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPV---------------DV 160
           K+TT ++    L++  +    I + +  IG    P    +                    
Sbjct: 119 KSTTTDVTAQLLAATGRMVGMISTVDFQIGNRRWPNDTRQSTPEAPEVQALLREMVTAGC 178

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGL 217
           D  + E     L             +AV+  I   HL      E+  + KA++F      
Sbjct: 179 DTAVIEATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDYHGTFEQYRADKAQLFALLGER 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             +    +N DD           A        +G  + AD Q +        S + V   
Sbjct: 239 SGSRWAIVNADDPNHAYFLDA--APADAVRLRYGLHEPADVQGQILHSGPMSSVVRVTSP 296

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             + ++     G   A N L  L +       ++ A  AL+      GR         Q 
Sbjct: 297 WGTTDLTVPLPGRFNASNALAALTVALSQGVALEAAAAALAGVRAPRGRMVPID--AGQP 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D ++N +         + + + P  +GR IAV G   E           +   ++
Sbjct: 355 FAVIVDYAHNPDSFE-----QIFAMLRPQVQGRMIAVFGSAGE----RDVAKRAIQGEIA 405

Query: 398 LYNISHVWLSGFHVL 412
                 + L+     
Sbjct: 406 GRMCDLLVLTDEDPR 420


>gi|312885135|ref|ZP_07744819.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309367208|gb|EFP94776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 494

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/449 (13%), Positives = 132/449 (29%), Gaps = 41/449 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----S 82
           V  + +DSR +     F AI G + DG  +I  A++ GA  V+     + + G      +
Sbjct: 27  VKHLELDSRKVEVGSTFIAILGHNVDGRVYINEAIKSGANAVIAQACPLNTHGKTEVRDN 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY----- 137
           +P+  VDD+   L+ LA          +IA+TG+ GKTT  +++      +         
Sbjct: 87  VPIVFVDDLGIHLSSLAKRIFPLKNNKLIAVTGTNGKTTITQLIAQWFELVSCHAAVLGT 146

Query: 138 ---------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                        +   +                    L +S  G  +     +   + +
Sbjct: 147 TGNGFIDDLKPATNTTGNAIEVQQTLHALEQQGAKYTALEVSSHGLSQGRVKALEFEVGI 206

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            + ++  HL     +E                    +N DD   +       +    +++
Sbjct: 207 FSNLSRDHLDYHGTMENY-EQAKFSLFNQHCCKQAIINIDDPVGKRWLGYLDSAVAVSLH 265

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                ++   +   +        +         E+    IG   A N+L+ +  +  +  
Sbjct: 266 PQDFPRSVWAKCVNYSV--NGISLAFDGMFGDGEIEVALIGGFNANNVLIAMTTLLCMGV 323

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D    I    +  P  GR + +  +           + +A           L  +  H  
Sbjct: 324 DKKQLIATAPLLRPVIGRMELFTASKQAKVIVDYAHTPDA-------LEKALHALKDHSG 376

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALP 419
           G    + G     G         +   +S      V ++  +            ++  + 
Sbjct: 377 GALWVIFG----CGGDRDVGKRPMMGRISEELADRVIITDDNPRSEDPTLIVKDIQAGMS 432

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           R   V           +        D+++
Sbjct: 433 RPESVMVEHDRRAALKYAIEHSRPEDIIL 461


>gi|123441027|ref|YP_001005016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122087988|emb|CAL10776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 490

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 141/464 (30%), Gaps = 45/464 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S
Sbjct: 11  DVPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDAS 70

Query: 81  ----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
                 +PV  + ++   L+KLA     +      ++ +TG+ GKTTT ++L      + 
Sbjct: 71  MVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLG 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGHVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    AV T ++  HL     +     A   +     ++    +N DD        +  
Sbjct: 191 ALPFAAAVFTNLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLEQLP 249

Query: 241 ALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++ +              +       + +         ++    +G     N+L+
Sbjct: 250 QAVAVSMENNIPVGWNGPWLSATQVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLV 309

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +  L   +   + A     P  GR + +              + +A          
Sbjct: 310 ALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNALGKPTVVVDYAHTPDA-------LEK 362

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
            L+    H +G+   V G     G         L   ++      V ++  +        
Sbjct: 363 ALAAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQA 418

Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   L  + H                     DVV++  K 
Sbjct: 419 IIADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 462


>gi|213966572|ref|ZP_03394723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
 gi|301384713|ref|ZP_07233131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059799|ref|ZP_07251340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato K40]
 gi|302131746|ref|ZP_07257736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928422|gb|EEB61966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato T1]
          Length = 487

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFVAADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455


>gi|292490619|ref|YP_003526058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
 gi|291579214|gb|ADE13671.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus halophilus
           Nc4]
          Length = 523

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 153/479 (31%), Gaps = 47/479 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL  +   S+G      +N +S+DSR + P   FFA +G    GHD+I  AV KGA 
Sbjct: 26  LSDLLAGL--VSVGTAQDRRINRLSLDSRRVGPGTLFFACRGTRQSGHDYIGAAVGKGAV 83

Query: 67  LVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
            V  +  +       A + +  +P+  + D+   L  +A     R   +  ++ +TG+ G
Sbjct: 84  AVAYDPIIPLSSVVHAGLQAQDVPLIALPDLGARLGVIADRFYLRPSQQLCVMGVTGTNG 143

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--------- 169
           KT+    L  AL   +     IG+    +   L  +++       + E            
Sbjct: 144 KTSVSHFLAQALHQQEAPCGLIGTLGVGLMGALKPSQLTTPDAVTVQEQLAVTRAAGGRY 203

Query: 170 ------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                 SH  E   +  ++  + A+ T ++  HL     +    +AK  +F        +
Sbjct: 204 AVMEVTSHALEQGRVNGVI-FNTAIFTNLSREHLDYHGDMTRYGAAKFRLFGQPGLRHAV 262

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D +    L    H     T+ S+G +          +   ++  + + +QG   E 
Sbjct: 263 INVDDTAGEAFLA---HLPAEVTVISYGLTNPQASLRVN-ELHCDRRGIVMNIQGPWGEG 318

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      N    L  +  L        +AL      +    R           L+ 
Sbjct: 319 ELICPLLGRF-NAYNLLAALGGLLTTGMPFTEALQRLSQVQAVAGRMEPMGGAAGEPLLV 377

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L         R   V G     G         L   ++      
Sbjct: 378 VDYAHTPDALEQALCSLRA-HLEPGARLWCVFG----CGGNRDRGKRPLMGAVAERWADF 432

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V L+  +            +   +     V+                   D+V++  K 
Sbjct: 433 VMLTDDNPRDEDPRQIIIEILSGMEAPDRVYQLRDRAEAISRAVELAGSKDIVLIAGKG 491


>gi|254370090|ref|ZP_04986096.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|151568334|gb|EDN33988.1| hypothetical protein FTBG_01187 [Francisella tularensis subsp.
           tularensis FSC033]
          Length = 484

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/477 (11%), Positives = 137/477 (28%), Gaps = 48/477 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   +
Sbjct: 4   IKMKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KG  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT
Sbjct: 63  AKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           +    +   L              +         ++     +          +    + E
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S     +     +   +A+ + ++  HL     ++    AKA++             
Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +   +    + +            K K                    + 
Sbjct: 232 AIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                    M + L   S+        I  L    P +GR +      +         + 
Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A           L  ++ +       + G     G    +    +   ++    S + +
Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVI 400

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +            ++          +  + +    F   +   GD++++ +S  
Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 456


>gi|255068193|ref|ZP_05320048.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
 gi|255047535|gb|EET42999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sicca ATCC 29256]
          Length = 492

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL           T+Y +G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGVELAGRLKKDCPDLTVYGYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIVHFTASSDGMEAVFQTSWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVERAASSDIILIAGKG 464


>gi|291527976|emb|CBK93562.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale
           M104/1]
          Length = 490

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 1   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VDD   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L S       IG+  +  G              R+       + E      + 
Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +          I V T + P H+      +      A+                
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +             + ++G     +      +   E   + V+     +      +
Sbjct: 233 FNGDDEHLEGIMKGHTCQVETYGYKSTNNLVAENVELKKEHGALGVKYHVSGLLDFDVEV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  ++I               H    +G+     + + +  +ID ++NA
Sbjct: 293 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  S+L+ +  +  GR + + G     G  ++S   ++ EV S      V  S 
Sbjct: 353 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 404

Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +   +  DGD++V+  K 
Sbjct: 405 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458


>gi|291524550|emb|CBK90137.1| UDP-N-acetylmuramyl-tripeptide synthetases [Eubacterium rectale DSM
           17629]
          Length = 490

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 1   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VDD   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVTPIEG---VTYIKVDDTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L S       IG+  +  G              R+       + E      + 
Sbjct: 118 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +          I V T + P H+      +      A+                
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +             + ++G     +      +   E   + ++     +      +
Sbjct: 233 FNGDDEHLEGVMKGHTCQVETYGYKSTNNLVAENVELKKEHGALGIKYHVSGLLDFDVEV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  ++I               H    +G+     + + +  +ID ++NA
Sbjct: 293 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  S+L+ +  +  GR + + G     G  ++S   ++ EV S      V  S 
Sbjct: 353 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 404

Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +   +  DGD++V+  K 
Sbjct: 405 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 458


>gi|120597216|ref|YP_961790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|146291589|ref|YP_001182013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
 gi|120557309|gb|ABM23236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella sp. W3-18-1]
 gi|145563279|gb|ABP74214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella putrefaciens CN-32]
          Length = 500

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 153/487 (31%), Gaps = 54/487 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL                N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGYRVDGRQFIDKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNK----LAVAARLRSKAT 109
           GA  V+V+TD     G           + I  F ++  + A+      LA    +     
Sbjct: 57  GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFG----- 163
           II ITG+ GKT+T +++   ++S+++         N   G  +       D         
Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLRRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176

Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F 
Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYATAKQSLFR 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  +    D      L            +S    + A F  +  +   +     + 
Sbjct: 237 FSTLGHGLLNLDDPVGASWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQGVSTTLV 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 ++    +G     N+L  L  + +   D++   + +    P  GR +R+  A N
Sbjct: 297 WPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTADN 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    + +A           L+ +  H  G    V G     G         L   
Sbjct: 357 ITLVVDYAHTPDA-------IEQALTALRRHCAGDLWCVFG----CGGDRDKGKRPLMGR 405

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +      + ++  +            +   L                  +      GD+
Sbjct: 406 AAEQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDL 465

Query: 447 VVV--KS 451
           +++  K 
Sbjct: 466 ILLAGKG 472


>gi|241205562|ref|YP_002976658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859452|gb|ACS57119.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 486

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 147/460 (31%), Gaps = 38/460 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR +AP   F A+ G   DG  FI+ A  +GA + + +  
Sbjct: 14  LEAQLEGPAGLLDISGLSSDSRKVAPGNVFVAVAGTKADGAGFIVDAAGRGAAVAIASQA 73

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + A     SIPVF V +    L+  A     +   T++A+TG+ GKT+         +  
Sbjct: 74  IDA-----SIPVFAVKEPRRFLSIAAARFHGKQPDTMVAVTGTAGKTSVASFTRQIWAYA 128

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLT 179
             T A IG+             +       +                +  S  G  +   
Sbjct: 129 GHTAAMIGTTGVVSPTRNEYGSLTTPDPVSLHQLLAELAGEGVTHAAMEASSHGLDQCRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             VR   A  T +   H+     +E   +AK  +F+ L   G+  + + D  +     K+
Sbjct: 189 DGVRLAAAAFTNLGRDHMDYHPTVESYMAAKMRLFDTLLPKGSPAVIFADDPWSAQAIKA 248

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  I + G+  +     R      +Q              +           +   
Sbjct: 249 ATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDI----PLAGDFQVANA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +  +    A  A++      G   R     +     L    Y   P ++    +V
Sbjct: 305 LVAAGLAMSTGVEAKVAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDAL---ENV 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-- 417
           L  + P   GR I V G     G         +   ++      V ++  +  + + A  
Sbjct: 362 LGSVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPRSEEPASI 417

Query: 418 ----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +  +                 S L  GD ++V  K 
Sbjct: 418 RAEIMAAAACAAEIADRASAIREAVSMLRSGDTLIVAGKG 457


>gi|217076983|ref|YP_002334699.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
 gi|217036836|gb|ACJ75358.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Thermosipho africanus TCF52B]
          Length = 493

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 162/477 (33%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               D+L+ +      +    +   N IS +S+ I     F   KG  +D H+ +    +
Sbjct: 1   MKIKDILRELNSLILKVNCDEELEFNYISSNSKDIQENTLFICRKGTSFDSHNIVDDLYK 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120
           +GA + VV  ++         P   V D   A + +A     +    +I   +TG+ GKT
Sbjct: 61  EGANVFVVEREIRKY------PYIQVVDSRIAESIIASMFYSKPYEKLITFGVTGTNGKT 114

Query: 121 TTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFE 166
           T+  +    + +                   + +    P  +  M             + 
Sbjct: 115 TSVHLFHHIMHNFGIKGSISGTVVNDIMGDKFYHPNTTPSAIEIMRNMHKTLENGGKYYG 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     ++    +R  I  IT I   HL      E    AK  I   L+  G   +N
Sbjct: 175 MEVSSHALSQYRVESIRYDIVGITNITRDHLDFHETFENYKKAKFHILNLLKPNGIAVVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +     ELL+   +      + SFG   ++D+ + +       ++ ++       +V   
Sbjct: 235 H-----ELLQEVKNKNKNIKLVSFGVDSSSDYVIHEITTNWSGTFFKLDTPYGEKKVASQ 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG + A N+ + +  ++ +  D+D  I +++ F   +GR +    A   G   ++D ++
Sbjct: 290 LIGEYNAFNITLVVAALAEIGYDIDEVIASVATFRGVDGRFEIIPEAKKLGIEIVVDFAH 349

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         V+  +    +GR I V G     G  S      +   +         +
Sbjct: 350 TPDALE-----KVILSLRKLTKGRLITVFGA----GGQSDIGKRPMMGEVVSKYSDISII 400

Query: 407 S-----GFHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +     G   L +    +  L         E          +    GDV+++     
Sbjct: 401 TTDDPRGEDPLKIIKDVEAGLVPGSLSLSIEDRKEAIDTAITLANRGDVILIAG-RG 456


>gi|319400490|gb|EFV88723.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Staphylococcus epidermidis FRI909]
          Length = 494

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 77/474 (16%), Positives = 152/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             +VVVN ++       ++    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNREL---KLKGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   +        + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G +  A F  +  K+  +    E      S  V    +
Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFFTPFGSFPVRSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V     +++  I A++   P EGR       L+      +   Y  
Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458


>gi|293376913|ref|ZP_06623130.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
 gi|292644459|gb|EFF62552.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Turicibacter sanguinis PC909]
          Length = 459

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 103/463 (22%), Positives = 189/463 (40%), Gaps = 31/463 (6%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SI-APQEAFFAIKGPHYDGHDF 56
           M    T   +L  I+G  I       +  ++   R    I  P    F ++      H  
Sbjct: 1   MKA-HTLGKILTVIKGTIIQGNSDILIKDVA---RYYEHIEQPNTLLFLVQ------HRN 50

Query: 57  ILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           I    ++ A      VVV+ ++          V  V D+  A +      R      ++A
Sbjct: 51  ID--FKRIAQYCPCAVVVDREVKELKKISGCIVIRVSDIDDAYDAFIHFYRQLFDIPVVA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TG+ GKTTTK+M+   LS+  K    + S N +    + L R+   +   ++E  +   
Sbjct: 109 VTGTSGKTTTKDMIKHILSTWYKVEGTVRSANGNPRNLIYLLRIDDSIQAAVYESAVGAP 168

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G+I +      P+I +IT I   HL     ++   +AKAE+   + + GT+ LN DD   
Sbjct: 169 GDITYTCSHFLPNIGIITNIGIDHLERCKTLQGYINAKAEMVSVIPEGGTLILNADD--- 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E +K    +     I  FG      FQ       +      + L     ++   G G H 
Sbjct: 226 EKIKTIDTSKCKGNIIYFGIDTPCLFQASNITYGNNGMNFTLTLNKMKYQIFVPGYGKHQ 285

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  L     +   +  A +ALS F                   T+ID+++N N AS
Sbjct: 286 VYNALADLAATHEMGIGITQAAQALSSFKLLMN---HCEIKKGLNQATIIDDTWNINTAS 342

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +KAA++ L +++   +   +A++G + ++GE S  +H ++ ++++ +NI ++   G    
Sbjct: 343 LKAAMNTLCELNQQHKK--VALIGHIKQLGEHSADYHKEVGKMIAKFNIDYLITIGDLAN 400

Query: 413 ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +      +     V   E  +G++  +   L +   +++K S
Sbjct: 401 NIATECSLNGFHGKVFQFEQTEGVYELLSDILNEETTLLIKCS 443


>gi|329726283|gb|EGG62752.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU144]
          Length = 494

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKIIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
            G+VVVN ++       ++    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CGIVVVNRELELK---GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   +        + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G +  A F  +  K+  +    E      S  V    +
Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V     +++  I A++   P EGR       L+      +   Y  
Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458


>gi|315646026|ref|ZP_07899147.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
 gi|315278787|gb|EFU42101.1| UDP-N-acetylmuramyl-tripeptide synthetase [Paenibacillus vortex
           V453]
          Length = 495

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/484 (15%), Positives = 143/484 (29%), Gaps = 55/484 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   +    I       + GI  DSR + P + F  + G   DGH F   A +KG
Sbjct: 1   MKLKQLSSVLAAAVIDGSGDVEITGIETDSRQVKPGDLFICLPGHTVDGHLFAAQAAEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  +VV   +      + +P   V D   A+  LA     +      +I +TG+ GKTTT
Sbjct: 61  AAALVVERKL-----EVDLPQVIVKDSRFAMAGLANTFFDQPSARMKMIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFE 166
             ++   ++        IG+     G                            +  + E
Sbjct: 116 TYLIETIMNDHGLKTGLIGTIQMKYGNQSFPMPRTTPEALELQRYLNDMANAGTECCVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEGLEKTGT 222
           +  SH  E   +        A+ T +   HL     +EE         + +     K   
Sbjct: 176 V-SSHALEQGRV-KGTDFRTAIFTNLTQDHLDYHHTMEEYRGAKGLFFSRLGNAFAKDEK 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   A    +    + ++G  ++AD +       ++ +   V     S +
Sbjct: 234 SRKYAVLNADDDASAYFAKITAAEVITYGLGEDADVRASNISITAQGTSFHVDTFRGSAD 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  +    +    ++    +L      +GR +              
Sbjct: 294 ISIRMVGKFNVYNAMAAIAAALLEGVPLEDIKSSLESVPGVDGRVEVVDEGQPYAVIVDY 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +          +VL  ++   EGR + V G     G         +   ++     
Sbjct: 354 AHTPDG-------LENVLRTVNEFAEGRVLTVFG----CGGDRDRTKRPIMGKIAAKYSD 402

Query: 403 HVWLSGFHV---------LALKDAL-PRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV 449
            V ++  +            ++  L    +                        GDVV++
Sbjct: 403 VVLVTSDNPRTEDPDLILKDIEAGLIEDGVAAESYNLIVDRRKAIEKAIEMASPGDVVLI 462

Query: 450 --KS 451
             K 
Sbjct: 463 AGKG 466


>gi|77460899|ref|YP_350406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384902|gb|ABA76415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens Pf0-1]
          Length = 487

 Score =  128 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 153/455 (33%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  +DG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELALDSRNVRAGDLFLAVPGGRFDGRAHIADALQRGAAAVAYEVEGATVLPITEV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---- 137
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +      
Sbjct: 75  PLIPVKGLAAQLSDIAGRFYGEPSHHLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 138 -----ACIGSYNNHIGVPLTLARMP-----VDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                      +     P  +A                 + +S  G  +     +   +A
Sbjct: 135 TLGSGFHGSLQSGLHTTPNPIAMQATLGDLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A AKA++           +N DD F   L A+     + T 
Sbjct: 195 VMTNLSRDHLDYHGTMEAYAEAKAKL-FAWNDLKCRVVNLDDDFGRQLAAEKRESRLITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A   +R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLLDSSAYLYVREAQFDDHGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAVGALLGLD 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  +K L       GR    R         ++D ++  +         VL+ + PH 
Sbjct: 312 YALDEILKVLPKLEGPAGR--MQRLGGGTQPLVVVDYAHTPDALE-----KVLTALRPHV 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           +G+ + + G     G         L   +       V ++  +            ++   
Sbjct: 365 KGQLLCLFG----CGGDRDRGKRPLMAEVVERLADRVLVTDDNPRTEDPAVIFDDIRAGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +V +          + +     DV+V+  K 
Sbjct: 421 TAVDNVTFVAGRGQAIAQLIAGASADDVIVLAGKG 455


>gi|325478261|gb|EGC81380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 477

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 163/475 (34%), Gaps = 53/475 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  F ++L+ I   S     +  +  ++ +S+ +    AF AIKG   DGH +I  A++ 
Sbjct: 1   MLKFEEVLETIAYISCEKNNEKNIVAVANNSKEVKEGYAFVAIKGNIEDGHKYIDSAIEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           GA L++   D+    G   I    V+D   AL +++         K TI+++TGS GKTT
Sbjct: 61  GASLIIHTEDIAYKEG---ISYIKVEDGRCALAEISNKLSDYPSKKMTIVSVTGSNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFEL 167
           T  ++   L  I    A IG+    IG                     + +D +     L
Sbjct: 118 TSRLVYFLLDEIFGKAANIGTDLALIGGNEYRTSNTTPVITEVNKLMNICLDENIKYLSL 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  +   + +     V T ++  HL     ++    AK  +F+  + T     + 
Sbjct: 178 ESSSHGLDQKRIYGLDIDYGVFTNLSKEHLDYHKTMDNYFKAKMILFDQAKHTVANIDDP 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + L             ++G +        +     +    +V  + K +E + + 
Sbjct: 238 YGKKAKEL--------YPNTITYGINNENADYRAENVVKKDG---KVSYEVKGVEFILNT 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I  +   N L    +V  + A ++    A+  F+    R +     L          +  
Sbjct: 287 IADYEVYNTLAATAVVCDMGASLEEVKDAMKKFNGVASRFEYMENNLGLNIIIDFAHT-- 344

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                     +         +G +I  +  +   G+ ++ F +   +  +  ++  V  +
Sbjct: 345 --------PFAYECLFKSVPQGHKIYAVYGIN--GDRNKEFRVSTGKACADNDVFSVVTT 394

Query: 408 GFHVLALKDALP-------RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +        +S    Y      +    +  +    GD + +  K 
Sbjct: 395 DDPKFDTVENISKDIIEGIKSKGGEYVNILDREDAIKYAITHANKGDFIFLLGKG 449


>gi|115314388|ref|YP_763111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
 gi|115129287|gb|ABI82474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 492

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/477 (11%), Positives = 137/477 (28%), Gaps = 48/477 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   +
Sbjct: 4   IKMKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKT 120
            KG  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT
Sbjct: 63  AKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKT 118

Query: 121 TTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFE 166
           +    +   L              +         ++     +          +    + E
Sbjct: 119 SISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S     +     +   +A+ + ++  HL     ++    AKA++             
Sbjct: 179 V--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKK 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +   +    + +            K K                    + 
Sbjct: 232 AIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYT 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                    M + L   S+        I  L    P +GR +      +         + 
Sbjct: 292 TKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTP 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A           L  ++ +       + G     G    +    +   ++    S + +
Sbjct: 352 DA-------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVI 400

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +            ++          +  + +    F   +   GD++++ +S  
Sbjct: 401 TEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 456


>gi|229588485|ref|YP_002870604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas fluorescens SBW25]
 gi|229360351|emb|CAY47208.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi nopimelate
           ligase [Pseudomonas fluorescens SBW25]
          Length = 487

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 157/455 (34%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G  YDG   I  A+Q+GA  V    +    +    +
Sbjct: 15  DLLIRELTLDSRNVRAGDLFLAVPGGKYDGRAHIADALQRGAAAVAYEVEGATVLPITDV 74

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140
           P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL  + +    + 
Sbjct: 75  PLIPVKGLAKQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVG 134

Query: 141 -----GSYNNHIGVPLTLARMPVDVDFG--------IFELGMSHLGEIRFLTHLVRPHIA 187
                       G+  T   + V                + +S  G  +     +   +A
Sbjct: 135 TLGAGFYGALQSGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A+AKA++           +N DD+F   L A+     + + 
Sbjct: 195 VMTNLSRDHLDYHGTMEAYAAAKAKL-FAWNDLKCRVVNLDDAFGRQLAAEDSEARLISY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +  +A    R+ +   E     +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLEDSSAYLFCREAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGLD 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  ++ L       GR    R    +    ++D ++  +         VL  + PH 
Sbjct: 312 YALDEILRVLPKLEGPAGR--MQRLGGGKQPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           +G+ + + G     G         L   +       V ++  +            ++   
Sbjct: 365 KGKLLCLFG----CGGDRDRGKRPLMAEIVERLADGVLVTDDNPRSEDPSQIFDDIRAGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +          + +S    DVVV+  K 
Sbjct: 421 NDVSKAAFVAGRGAAIAQLIASASADDVVVLAGKG 455


>gi|92114317|ref|YP_574245.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797407|gb|ABE59546.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chromohalobacter salexigens DSM 3043]
          Length = 509

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/472 (16%), Positives = 157/472 (33%), Gaps = 43/472 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            QA         PQ     +++DSR   P   F A+ G H DG DF+  A++ G   V+ 
Sbjct: 18  AQATSARLDEWRPQRERCAVTLDSREAGPGVLFVAVPGVHADGRDFVAQALEAGVEAVLC 77

Query: 71  NTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTI 128
             + +  S+      V  V  + G L +L            +I +TG+ GK++    L  
Sbjct: 78  EAEALPTSVPEQEARVLAVPGLRGQLGELGRHVFAVPASLELIGVTGTNGKSSVTHYLAA 137

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------DFGIFELGMSHLGEIRF----- 177
              ++    A IG+     G P  L    +           + EL    +G +       
Sbjct: 138 LSEALGTPAAVIGTLGV--GRPQHLRPARLTTPGPLALQSALGELSAEGVGRVAMEVSSH 195

Query: 178 -----LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     R H AV T ++  HL     +   A+AKA +F+  E    +    D    
Sbjct: 196 ALEQGRVTGCRFHAAVYTNLSRDHLDYHGSMAAYAAAKARLFQHRELALAVVNGDDRLSP 255

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +L           + + G  +    ++  W   ++     +      +E+    +G   
Sbjct: 256 LMLA---GLAKGVRVLATGTQEATTLRVIDWFPHAQGQRALIATPEGEIELDLSLLGRFN 312

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L+ +  +  + A+++    A +   P  GR    +  + +   T++ +  +   A 
Sbjct: 313 LDNVLLAIATLYGMGAELNALFSAAARLAPVPGR---MQRLVAENAPTVVVDYAHTPDAL 369

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----- 407
             A  ++ + +      +   V G     G         L    +      + +S     
Sbjct: 370 RNALEALRAHLPSSDGAKLWCVFG----CGGDRDRGKRPLMAQAAEALADRLVISDDNPR 425

Query: 408 GFHVLALKDALPRS------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           G    A++D +                       +   +  + D+V++  K 
Sbjct: 426 GEPAAAIRDEIAAGLSTDGRARAECMGGRREAIEWTLDAAGEHDIVLIAGKG 477


>gi|257066992|ref|YP_003153248.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
 gi|256798872|gb|ACV29527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaerococcus prevotii
           DSM 20548]
          Length = 477

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 152/477 (31%), Gaps = 57/477 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +F D++  I            +  ++ DSR +     F AIKG   DGHD+I  A++K
Sbjct: 1   MISFEDIISHISYIDYKKANDKAIKQVTNDSRKVNEGTIFVAIKGSLSDGHDYIASAIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTT 121
           G+ L++   D+        I    V D    L +++            ++A+TGS GKTT
Sbjct: 61  GSSLIIHTADI---KREEGISYIKVTDPRKTLAQISNLIYDFPSKKMDLVAVTGSNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIF 165
           T  +++  +  I    A IG+ N  +G  +                    +  ++     
Sbjct: 118 TSRLISFLMGEIFGESASIGTNNAVVGDEIIPTSNTTPDITEVNRILAKCLDKNIHHLAL 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S  G  +   + +     + T ++  HL     ++    AK  +FE  + T     
Sbjct: 178 E--ASSHGLDQKRLYGLDISYGIFTNLSEEHLDYHKTMDNYFKAKMILFENAKTTIANID 235

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +      + L +           +F   +       +  +  +    ++  + K  E V 
Sbjct: 236 DPYGKKAKELFS--------NTVTFAIDEKNADYRAEDIRKEDG---KISFKIKGCEFVI 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             I  +   N L     ++ + A ++    A   F   + R +     L          +
Sbjct: 285 RKIANYEIYNTLAACACLNQMGASMEEIAAAYKKFKGVKSRFEYIENDLGINIILDFAHT 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                             S     ++IAV G     G+ +  F   +      ++   V 
Sbjct: 345 ---------PRAYEALFESVPEGAKKIAVFGI---NGDRNAHFRRLIGNACGKFDTFAVL 392

Query: 406 LSGFHVLALKDALPRSIHV---------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        D +   I V            +       +       GD V +  K 
Sbjct: 393 TTDDPKFDDIDHINEEIIVGLDDYKQAYVIKKDRTDAMEYAFRKARPGDYVFLLGKG 449


>gi|296313576|ref|ZP_06863517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
 gi|296839877|gb|EFH23815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria polysaccharea ATCC 43768]
          Length = 492

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A  G + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACPGEYADGRSYIPAAVANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRRQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F   +    +    D+   EL+           +Y +G S+ 
Sbjct: 209 HLDYHGTMEAYDAIKSRLFYWQDLQHAVINIDDEYGAELVCRLKKDCPDLAVYGYGFSER 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIAAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L    P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLEKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP   +    E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPNPERVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVGRAAVNDIILIAGKG 464


>gi|28871548|ref|NP_794167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|38257959|sp|Q87WY0|MURE_PSESM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28854799|gb|AAO57862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016729|gb|EGH96785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 487

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/459 (17%), Positives = 155/459 (33%), Gaps = 41/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGATVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDVAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQAALTDLRKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L        
Sbjct: 191 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPNLNCRVINLDDDFGRELAGLKQESR 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T        +A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 250 LITY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +K L       GR +R   A           + +A          VL  +
Sbjct: 308 LGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 361 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSEAPTNIFDDI 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 417 RPGFVTADKVRFIEGRGQAIAELIASATVDDVVVLAGKG 455


>gi|169827838|ref|YP_001697996.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992326|gb|ACA39866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 155/365 (42%), Gaps = 15/365 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    IIAITGS GKTTTK  +   LS     +     +N           +       +
Sbjct: 4   KKGLPIIAITGSAGKTTTKAFVGSILSKKWNVFESKDYWNTTEHTKKHKEEINDSHQAVV 63

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTI 223
            E GM++ G I     +++P+I+++T I  AH+ NF   +  +A AK+E+  G+++ G +
Sbjct: 64  LEYGMAYPGIITNHCSIIQPNISIVTNIGLAHVGNFDGDVRGVAKAKSELIHGMDQQGLL 123

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD     L+ +        + + G   +AD++    +        +++L G+ +E+
Sbjct: 124 ILNKDDDNSRYLETQQFKGK---MLTVGIKSDADYRAYDLQYKDIGMSFKMKLHGQEIEL 180

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N L  + +   L          L+   P             +   T+ID
Sbjct: 181 YIPILGEHHVYNALNAVAVADYLGFSPLDIQAGLNFKKPPRRLTIYN----LRDDITVID 236

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++ +++P  ++AAI VL+ I+   +   +A++G M E+G L +  +  + E +    I  
Sbjct: 237 DTVHSHPQGVRAAIDVLTNIAKKRK---VAIIGQMRELGVLREEEYRKVGEYIYKVGIDE 293

Query: 404 VWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
               GF    + +A          VH+    D L   +   +   D ++VK ++    + 
Sbjct: 294 FITYGFRTDEMSNAAIEMGMDPSKVHHFINKDALHALLDKLIQPHDTILVKGASKTNMFE 353

Query: 460 LINLL 464
            +  L
Sbjct: 354 TVKYL 358


>gi|237799285|ref|ZP_04587746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022141|gb|EGI02198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 488

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 150/461 (32%), Gaps = 45/461 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 12  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKADGRAHIADALKRGAAAVAYEVEGSNVLP 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 72  LTDVPLIPVKGLAAQLSDIAGRFYGDPSRRLNLVGVTGTNGKTSVTQLVAQALDALGQRC 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 132 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             +AV+T ++  HL     +E    A AK   +  L        +        LK +S  
Sbjct: 192 FDVAVLTNLSRDHLDYHGTMEAYGAAKAKLFAWPNLNCRVINLDDDFGRQMAGLKQESRL 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +    + S           R+ K   +     +        +    +G     N+L  +G
Sbjct: 252 ITYSQLDSSAY-----LYCREAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVG 306

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  L   +D  +K L       GR +R   A           + +A          VL 
Sbjct: 307 ALLGLDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLE 359

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            + PH +GR + + G     G         L   +       + ++  +           
Sbjct: 360 ALRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGICVTDDNPRNESSSQIFA 415

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++     +  V + E        + +     DVVV+  K 
Sbjct: 416 DIRPGFTAADKVSFIEGRAQAIAELIAGASADDVVVLAGKG 456


>gi|78484908|ref|YP_390833.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiomicrospira crunogena
           XCL-2]
 gi|78363194|gb|ABB41159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiomicrospira crunogena XCL-2]
          Length = 505

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/482 (14%), Positives = 151/482 (31%), Gaps = 48/482 (9%)

Query: 8   HDLLQAIQ------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L   +          +    +  V+ ++IDSR +    AF A++G    G      A+
Sbjct: 2   KQLADILSFFKLPESVLVNGATEVDVSALTIDSRQVERGTAFIALQGGQSHGMAHAEQAI 61

Query: 62  QKGAGLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIA 112
           ++GA  ++ +   +           + + PV  V  +   L   A            +I 
Sbjct: 62  KQGASCILTDRAGLVEFNHSHQQPLNKTCPVIEVGSLNQQLATFAKWFYDAPSERVNVIG 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +TG+ GKT++   +   L+++ +             G+ +  I   + + R+   ++   
Sbjct: 122 VTGTNGKTSSSHYIAQMLTALNQKVALLGTLGNGWFGNLHPSINTTVDVVRLNHLLNGFA 181

Query: 165 FE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            E      + +S           +   +  +T +   HL      E   +AK ++F    
Sbjct: 182 EEQADYVVMEVSSHAIELGRIKGIDFDVLAMTQVTRDHLDFHKTEEAYQAAKKKLFLTYS 241

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +    D     L      +     +    ++  AD                  LQG
Sbjct: 242 SRYQVINADDKVGQALFHE--LSNKDTIVRYSQQTAQADIVCLDSHLSRTGIHGTFTLQG 299

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S+      +G    +N+L  + +++    +     KAL      +GR +          
Sbjct: 300 GSIPFDVPLMGQFNLENVLCAVSVMAACGFEWHRIQKALVFVKAVKGRMELLTQPGYPSV 359

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                  Y   P +++A +  +       +     V G     G    +    L   ++ 
Sbjct: 360 LID----YAHTPDALEAILKAVQHHVSDRDATVWVVFG----CGGDRDTGKRPLMGEIAE 411

Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              + V L+  +       A+   + + +H  VH          F        D+VV+  
Sbjct: 412 TYANEVVLTDDNPRTELPDAIVADIKKGMHRSVHVVHDRPEAIAFAIKKASSHDIVVIAG 471

Query: 450 KS 451
           K 
Sbjct: 472 KG 473


>gi|126172649|ref|YP_001048798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
 gi|125995854|gb|ABN59929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella baltica OS155]
          Length = 499

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 149/486 (30%), Gaps = 53/486 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL       +        N +++DSR+I   + F A+ G   DG  FI   +  
Sbjct: 1   MMLLRDLL----APWLHYAGAQSFNDLTLDSRAIRRGDVFLALPGHKVDGRQFIEKVLDL 56

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARL------RSKATI 110
           GA  V+V+TD     G +                +   ++ +A            +   +
Sbjct: 57  GAAAVLVHTDDADQHGKVLHSDNAEHGVQIYFFQLSRQVSAIAAQRYPLAHQSATTSLGV 116

Query: 111 IAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG------ 163
           I ITG+ GKT+T +++   ++S+ +K        N   G  +       D          
Sbjct: 117 IGITGTNGKTSTSQLIAQLITSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHD 176

Query: 164 -------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  +  + +S  G ++     V   +AV T +   HL     +E  A+AK  +F  
Sbjct: 177 FEAQGASVCAMEVSSHGLVQGRVDAVSFDVAVFTNLTRDHLDYHGDMESYAAAKQSLFRF 236

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D      L            +S    + A F  +  K   +     +  
Sbjct: 237 STLGHGLLNLDDAVGASWLTELKSVPAQMWGFSIEGHQAAAFYTKNAKFDDQGVSATLVW 296

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E+    +G     N+L  L  + +   D+    + +    P  GR +R+  A N 
Sbjct: 297 PEGETEIHSPLLGAFNLSNLLAALSALYLQGFDMKALAEQVQYLTPVAGRMERFTTANNI 356

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + +A           L+ +  H  G    V G     G         L    
Sbjct: 357 TLVVDYAHTPDA-------IEQALNALRRHCAGDLWCVFG----CGGDRDKGKRPLMGKA 405

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      + ++  +            +   L                  + +    GDV+
Sbjct: 406 AEQYADRIMVTSDNARSEDPAQIITDIIQGLTHPQQALTQVDRIAAIKEVVALAKPGDVI 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LLAGKG 471


>gi|170781763|ref|YP_001710095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
 gi|169156331|emb|CAQ01479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Clavibacter michiganensis subsp. sepedonicus]
          Length = 514

 Score =  128 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 146/453 (32%), Gaps = 39/453 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  + P + +  ++G    G  F   A   GA  V+ + D +A      +PV  
Sbjct: 40  TGVTLSSSDVQPGDLYVGLRGVRVHGARFASDAAASGAVAVLTDPDGLAEARDSGLPVIL 99

Query: 88  VDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL  +A        + AT+  +TG+ GKT+   +L   L  +        +   
Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159

Query: 146 HIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            IG     +R+                + +     + +S     R     +   +A    
Sbjct: 160 RIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDVAAFIN 219

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL +++  EE   AKA  F+       +          +++    +    T  S  
Sbjct: 220 LSHDHLDDYADFEEYFEAKAAFFDPDRARRGVVSLDTVWGQRIVEQ---SRIPMTTISAQ 276

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADV 310
               AD+++   +Q  + +   ++     + V    +       N  + + ++     D+
Sbjct: 277 PGIEADWRVTVLEQTPDSTGFRLEGPDNRVLVSSVPVPGWFMAANAGLAIVMLVESGYDL 336

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D     L      +         ++     L    Y   P +       L  + P   G+
Sbjct: 337 DAVAHVLDRDGGIQAYIPGRAERVSGDTGPLFFVDYGHTPDAF---EQTLQALRPFTPGK 393

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH-- 423
            + V G     G+   +   ++  + +      V ++          +++ +L       
Sbjct: 394 LVMVFGA---DGDRDTTKRAEMGAIAARL-ADVVVITDYHPRYEDPASIRASLIAGARAA 449

Query: 424 -----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                +H             S + +GD ++V  
Sbjct: 450 VPDREIHEVPDPATAIRTAVSLVGEGDTILVAG 482


>gi|317495054|ref|ZP_07953426.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
 gi|316914826|gb|EFV36300.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gemella moribillum M424]
          Length = 504

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 166/474 (35%), Gaps = 32/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D+++ I+  +I       VN IS DSR I   + F AIKG   DGH++I   + +G
Sbjct: 7   MNILDIIENIKIKTIYGSLPTKVNNISQDSRKITKGDVFVAIKGYTVDGHNYIEKVIAQG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++   ++ V    ++    + LA      +K   +A+TG+ GKT+   
Sbjct: 67  AALVIASRYEDYNVQDCAVVVVKEHEIEKIASMLAKKINSGNKVHTVAVTGTNGKTSIST 126

Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169
           ++   L  + ++ + I    +  +   P+ L     DV      I EL            
Sbjct: 127 LVHNMLRELGESSSYIGTNGFGKNDDEPIYLGNTTPDVVTLHNKIGELHREDIKNLAFEA 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +    + V   +A+ T +   H+     ++  A  K+ +F  L    +       
Sbjct: 187 SSHAMVLGRIYNVDIDVAIFTNLTYEHMDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVL 246

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +  +   +           ++    + ADF     KQ SE    +     KS E  +   
Sbjct: 247 NKDDEYYSIMSKCLYHQEINYSVLDEAADFYAYNIKQYSENGRYKTTFTLKSPEGEYECQ 306

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++   M+  +    I       +++ L    P  G        L +     I   +  
Sbjct: 307 TNYIGDFMVSNVLAALIAVWLKGYSVEKLVNILPNLGALYGRMEILGEDLPIDIISDFAH 366

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P   K  +    +I  +    R  +L  M   G    S    + E++S     +V ++ 
Sbjct: 367 TPDGYKKLLEATREIRKNK---RTLLLTGMG--GGRDISKGPLIGEIISEA--DYVVITT 419

Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V  L   + + +     E           I      GDVV++ +S  
Sbjct: 420 DSPRDEDVEVLMGTIEKGMTHKNYEKVWFRTDAVKRIIQLAEPGDVVIL-ASKG 472


>gi|194099356|ref|YP_002002456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae NCCP11945]
 gi|254494327|ref|ZP_05107498.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|193934646|gb|ACF30470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226513367|gb|EEH62712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           1291]
 gi|283379455|dbj|BAI66137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae]
          Length = 492

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  AV  GA  V  + D   A      +P  G+ ++
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAVVNGAAFVFWDDDGKFAWNPEWKVPNQGIKNL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYDNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|254555978|ref|YP_003062395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
 gi|254044905|gb|ACT61698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Lactobacillus plantarum JDM1]
          Length = 493

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 22  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 76

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 77  PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 136

Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    I                         D       + +S +  +      +   IA
Sbjct: 137 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 196

Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   HL     + +     +                     +  + +  +      
Sbjct: 197 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG   +A    +  +  S  +  ++ + G    V    IG     NML       
Sbjct: 257 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  IK+L      +GR +                + +         ++ L  I 
Sbjct: 317 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 369

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417
                    V+G     G+  ++    +A++   ++   ++ S          + +   A
Sbjct: 370 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 426

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V   E           +   GDVV++  K 
Sbjct: 427 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 462


>gi|225872739|ref|YP_002754196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793951|gb|ACO34041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 502

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 159/474 (33%), Gaps = 39/474 (8%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
              L  +   +    P   + G+  DSR + P   F A++G   DG+ +I  A++KGAG 
Sbjct: 4   SQALAGVDTTARSG-PDPELTGVEYDSRRVTPGALFVAMRGETVDGNRYIGAAIEKGAGA 62

Query: 68  VVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           ++ ++    +  SL   + +  V     A+  +A         +  +  +TG+ GKTTT 
Sbjct: 63  ILTDSAEAMATWSLRTDVAIAQVPHGRQAMALVAANFFGHPERQLAVSGVTGTNGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLARM---PVDVDFGIFELGM-- 169
            +L   L   ++  A +G+   H            P +   +      VD G+ E  M  
Sbjct: 123 FLLESLLQHAQRKTALVGTIEYHLAGQVLPSPHTTPESRDLLALFRQGVDAGVTEAVMEV 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +   + +   +A+ T +   HL     +++  +AK  +F+            + 
Sbjct: 183 SSHALAQGRVYGIPYDVAIFTNLTRDHLDFHGSMQQYFAAKRMLFDASLGQPPRVSVLNL 242

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                 +    A    +          +F+    +                  V    IG
Sbjct: 243 EDPHGAELALTAREHGSEIYSYGFNTGEFRAEDVQLSGGGMRFHWHTPFGHAPVTTRLIG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L             D  +++++  H   GR   ++       FT++ + Y   
Sbjct: 303 RVNVYNLLAASAGALARGLAFDQVVESVAHLHSVPGR---FQTIDEGQPFTVVVD-YAHT 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +++  I++   +    +GR I + G     G         L    +      V L+  
Sbjct: 359 DDALRNLIALARDLVHKHKGRVITLFG----CGGDRDRTKRPLMGQAAAEGSDVVVLTSD 414

Query: 410 HVLA------LKDALPR-SIHVHYS---ETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      L D LP  ++   +                    GD+V++  K 
Sbjct: 415 NPRSEDPEAILADVLPGLTVPRTWYMLEPDRARGIRMALEIAQPGDIVLLAGKG 468


>gi|50122742|ref|YP_051909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
 gi|81643886|sp|Q6D0H8|MURE_ERWCT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49613268|emb|CAG76719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pectobacterium atrosepticum SCRI1043]
          Length = 495

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 135/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  + +DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQDAPACALREMILDSRVAAAGDLFVAIVGHKADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             +V   D  A+ G++     +PV  +  +   L+ LA     +    +  I  +     
Sbjct: 61  AAIVAEADGEAADGTVREMHGVPVVYLSSLNQRLSALAGRFYQQPAEKLQLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+              +                 
Sbjct: 121 TTTTQLLAQWSQALGEMSAVMGTVGNGLLGRAIPTENTTGSAVDVQQVLSQLVEQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQNRVAALPFTAAVFTNLSRDHLDYHGDMESYEAAKWLLFAEHRVGQMIIN 240

Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+            +    +  +       + +         E+ 
Sbjct: 241 ADDEVGLRWLAKLPDAVAVTMENNLVPGCRGRWLKATQIDYHDNGATIAFDSSWGQGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     NML+ L  +  L   +D  + A S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNMLLALATLLSLGYPLDKLVIAGSQLQPVCGRMEVFHAEGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV+V  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGRVQVIHGRAEAVTSAIMQAQENDVVLVAGKG 467


>gi|291616267|ref|YP_003519009.1| MurE [Pantoea ananatis LMG 20103]
 gi|291151297|gb|ADD75881.1| MurE [Pantoea ananatis LMG 20103]
          Length = 499

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 137/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F AI G   DG  FI  A+ +G 
Sbjct: 9   NLRDLL----GPWVPDAPARPLRDMTLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGV 64

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  AS G +     +PV  +  +   L+ LA     +       I  +     
Sbjct: 65  AAVIAEAEGEASDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGK 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
           T     +A  +               G+   L          +                 
Sbjct: 125 TTTTQLLAQWASLLGETSAVMGTVGNGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLT 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +++  SAK  +F   +    I  
Sbjct: 185 AMEISSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQQYESAKWLLFSEHQVGVAIIN 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +     +  + +          + +         E+ 
Sbjct: 245 ADDEVGRRWLANLPDAVAVTMENNLQPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMN 304

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +D  ++  +   P  GR + +              
Sbjct: 305 SRLMGAFNVSNLLLALATLLALGYALDDLLRVAARLQPVNGRMEVFSATGKPTVVVDYAH 364

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   + G     G         L   ++      V
Sbjct: 365 TPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQFADIV 413

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L                          D+V+V  K 
Sbjct: 414 VVTDDNPRSEDPQAIVQDILSGLLDPGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 471


>gi|242238095|ref|YP_002986276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dickeya dadantii Ech703]
 gi|242130152|gb|ACS84454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech703]
          Length = 494

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 147/477 (30%), Gaps = 46/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVANAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             +V   D  +  G+      +PV  +DD+   L+ LA            +I +TG+ GK
Sbjct: 61  AAIVAQADAASPNGTCCELHGVPVVYLDDLNQRLSALAGRFYQHPSDTLQLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165
           TTT ++L     ++ K +       N  +G                            + 
Sbjct: 121 TTTAQLLAQWTQALGKTSAVMGTVGNGLLGHVTPAENTTGSAVDVQQVLSQFVAQGAQVA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     V    A  T ++  HL     +    +AK  +F        +  
Sbjct: 181 AMEVSSHGLVQHRVEDVSFAAAAFTNLSRDHLDYHGDMAGYEAAKWRLFSEHRVGQAVIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+     L+    A+ +      G ++    +  +    +    +          +  
Sbjct: 241 ADDEVGRRWLERLPDAVAVSVRGDIGAARRQWLKATRVDYHNSGFTVHFDSSWGQGVIDS 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L++L  +  L   ++  +   S   P  GR + +              +
Sbjct: 301 SLMGAFNVSNLLLSLATLLSLGYPLEQLVITGSTLQPVCGRMEVFVADGRPTVVVDYAHT 360

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +A           L     H  G+   V G     G         L   ++      V 
Sbjct: 361 PDA-------LEKALEAARLHCHGKLWCVFG----CGGDRDKGKRPLMGAIAEQLADRVI 409

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   L  +  V                    DVV+V  K 
Sbjct: 410 VTDDNPRSEDPQAIVSDILSGLLDAGRVQAIAGRAEAVTSAIMQAAADDVVLVAGKG 466


>gi|91776626|ref|YP_546382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
 gi|91710613|gb|ABE50541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacillus flagellatus KT]
          Length = 474

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 136/450 (30%), Gaps = 39/450 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
             G++ DSR  +    F A  G   DG  FI  A+  GA  V+   +      + ++   
Sbjct: 11  FTGMTSDSRRASAGSLFLAYPGEQADGRRFIAQAIANGATGVIWEQEGFDWNPAWTVDHQ 70

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-- 142
            V  + G  + +A            +I +TG+ GKT+    L  A +++++    IG+  
Sbjct: 71  PVTGLRGQASAIAGQFYGHPSRQLWMIGVTGTNGKTSCSHWLAQAFNALRRKAVVIGTLG 130

Query: 143 ---------YNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      N    P+ L  M  D       +  + +S  G  +   + +   +AV+T
Sbjct: 131 NGFPDALSAAVNTTPDPILLQSMLADYLQAGAEVAAMEVSSHGLDQGRVNGIDFKVAVLT 190

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +   A AK ++F        I    D     LL            Y  
Sbjct: 191 NLTRDHLDYHGDMASYADAKRKLFHFGGVQAAILNQDDAFGRALLSELKAKGKHVLSYGL 250

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 D         +E   M+V                    N    L +++ L A  
Sbjct: 251 S---GGDVCGHDLHFDAEGLHMQVHTPQGEA---MVHAKLVGRFNASNLLAVLATLLASE 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A+ V         R +     G   ++ +  +    S  A    L+ +    +  
Sbjct: 305 VALEDAVRVLADIRPAPGRMQQLGGGGQPLVVVDYAH----SPDALEKALNALREQAKAN 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR-SIH 423
            I V G     G         L   ++      V ++  +         + + +      
Sbjct: 361 LICVFG----CGGDRDKGKRPLMAEVASRLADKVIVTSDNPRNEDPKEIIAEVVAGLHGP 416

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        +   GDVV++  K 
Sbjct: 417 AQVEPDREQAITQAIRAAQAGDVVLIAGKG 446


>gi|46201832|ref|ZP_00054276.2| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 478

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 160/450 (35%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR++ P   F A+ G   DG  FI  A+  GA  V+V       +    +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAAIANGAVAVLVPHGSTVEVPP-QV 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--- 140
            +    +       +A A        + A+TG+ GKT+T E     ++ +    A I   
Sbjct: 68  ALVQDANPRRRFALMASAFHGAQPRVMAAVTGTNGKTSTAEFFRQIMTRLGHRSAAIGTL 127

Query: 141 ----GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP-------HIAVI 189
                 ++N  G+              + E+G++H         L +          A  
Sbjct: 128 GIIAPGWDNSGGLTTPDPAGLHADLARLAEMGITHACMEASSHGLDQHRLDGVKLMAAAF 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL   + ++  A AK  +F  +   G   +   DS       +  A    T+  
Sbjct: 188 TNLTRDHLDYHASMQAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVLG 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G++     +L   +  ++   +++++ G+++ +     G   A N L  LG+     AD
Sbjct: 248 YGRAARD-LRLAAARPTADGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             TA++AL       GR ++       G    +D ++  +         VL  + PH   
Sbjct: 307 PVTALEALGSLEGVHGRLQKVAARA-HGAPVYVDYAHTPDALET-----VLKALRPHASR 360

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH- 423
           R + V G     G    +    L   +       + ++          A++ A+  +   
Sbjct: 361 RLVVVFG----CGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPA 416

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          S L  GDV+V+  K 
Sbjct: 417 GIEIGDRRDAIRAAVSGLQKGDVLVIAGKG 446


>gi|325261895|ref|ZP_08128633.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
 gi|324033349|gb|EGB94626.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. D5]
          Length = 486

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 144/481 (29%), Gaps = 57/481 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + LL+ ++   I    +  +     DSR +    AF  I G   DGHDF+    QKG
Sbjct: 1   MKLNQLLERLEYEVIQGSDEAEITTFINDSRKVEKGSAFVCISGAVVDGHDFVEEVAQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109
           A  V+V  ++ A      + V  V D   AL  ++ A                       
Sbjct: 61  AAAVIVEREVEA---PEDMTVIRVADSRYALALMSAAYFGYPADKMKIIGITGTKGKTTT 117

Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I +I   VG          A+   +K  A   +  ++         +    D  + E
Sbjct: 118 TYMIKSILEGVGHKVGLIGTIEAIIGDEKIPAANTTPESYTIHQYFARMVEAGCDSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S  G +   T  +   I + T +   H+        E+    K  +           
Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGPNEHKDFEDYKRCKGLL-------FQQC 228

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSM 281
                +  +       +     + +FG S+ AD +       S   +             
Sbjct: 229 RLGIANVDDEYFEDVFSRATCRVETFGFSEKADLRAVDTHLVSRPGYLGVAYHVSGLMDF 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N L  + +       V+   KAL           R         FTL
Sbjct: 289 DVEIDIPGKFSVYNSLTAIAVCRHFQVPVEQIKKALK----VANVKGRIEMIPVSDEFTL 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +       +  S+L+ +  +   R + + G     G  S+    ++ EV      
Sbjct: 345 MIDYAHNA----MSLESLLTTLKEYEPARLVCLFG---CGGNRSRERRYEMGEVSGRLAD 397

Query: 402 SHVWLSG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--K 450
             +  S         A+ D +   IH     Y E         +       GDV+V+  K
Sbjct: 398 LSIITSDNPRFEEPQAIIDDIKTGIHKTDGKYVEICDRKEAIKYAIEHGQRGDVIVLAGK 457

Query: 451 S 451
            
Sbjct: 458 G 458


>gi|83589689|ref|YP_429698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
 gi|83572603|gb|ABC19155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moorella thermoacetica ATCC 39073]
          Length = 499

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/457 (19%), Positives = 157/457 (34%), Gaps = 47/457 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+  ++  + G   Q  + G+  DSR I     F AIKG   DGH +I  A+++G
Sbjct: 1   MTLAELVAPLKIIARGGNQQVPLTGLHYDSRRIQSGFLFVAIKGFKTDGHLYIDAALERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV+  +         +    VDD   AL +LA         K  +I +TG+ GKTTT
Sbjct: 61  AVAVVLAQER---TLPPGVAWVRVDDTRLALGQLAARFYDYPSRKLRLIGVTGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             ++   L +  +    +G+  N +G               +   L +M       +  +
Sbjct: 118 THLIQAILEAGGRPAGLVGTIGNRLGDRVLPAEHTTPESLDLQHLLYQMVSLQARAVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-N 226
            +S               +AV T +   HL     +E+  + KA +F+GL++        
Sbjct: 177 EVSSHALALHRVAGTEFDVAVFTNLTQDHLDFHHNMEDYFNCKARLFQGLDQGVKAGPKY 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   ++  AL    + ++G +     + R     +  S   V   G    +   
Sbjct: 237 AVINGDDPYGSRLAALTPVPVVTYGCTPGCQVRARDIHLETGGSTSLVTWPGGEAAMELR 296

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L  L +      D   AI+AL  F    GR            FT++ +  
Sbjct: 297 LTGRYNIYNALAALAVALQEGIDPQVAIRALGRFKGVPGR---LERVDQGQPFTVVVDYA 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +          +VL        GR + V G     G         L    +     +  +
Sbjct: 354 HTPDG----LENVLRAARQVTRGRLLVVFG----CGGDRDRGKRPLMGRAAARLSDYSII 405

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +  +  +              E  + +   I   + +
Sbjct: 406 TSDNPRS--------------EDPEAIIADILPGVRE 428


>gi|262166449|ref|ZP_06034186.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
 gi|262026165|gb|EEY44833.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM223]
          Length = 495

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 156/480 (32%), Gaps = 42/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN      +L+      +   +    ++ + +DSR I   + F AI+G   DG  FI  A
Sbjct: 1   MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA +V+   D     G       +PV  + ++   L++LA       +  +I +TG+
Sbjct: 61  IAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI--------GVPLTLARMPVDVDFGIFE-- 166
            GKTT  +++   L  +    A +G+  N                 ++   +        
Sbjct: 121 NGKTTITQLIAQWLELLGHKSAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S  G ++     +     V + ++  HL     ++  A AK  +F        
Sbjct: 181 QYTSLETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D    + +K   HA+G+  +     ++    +    +       ++        E
Sbjct: 241 IINVDDAVGAQWVKQLPHAIGVSLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+L+ L  +  L  +    +       P  GR + ++           
Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  G+  A+ G     G         +   ++     
Sbjct: 359 AHTPDA-------LEKALRALHVHCTGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L      H          +   +    D++++  K 
Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|308271435|emb|CBX28043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 537

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 142/476 (29%), Gaps = 67/476 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +   S+ + P   F A+ G   DGHDF+  A++KGA  +VV    V        
Sbjct: 50  DPDIASVHYKSQDVKPSGIFVAVPGHRADGHDFVDMAIEKGAFAIVVQKKTVK-----DS 104

Query: 84  PVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +  V++   AL ++A            II ITG+ GKTTT  ++   L +       IG
Sbjct: 105 IIIEVENTRKALGRIAAEFYGNPSEKLVIIGITGTNGKTTTAYLIESILQTAGFKTGVIG 164

Query: 142 SYNNHI---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           + N                   +   L+ M +D    +  + +S      F         
Sbjct: 165 TINCRYSGKTFPSPVTTPESLDLQKILSEMVIDGVTHVV-MEVSSHAIDLFRIEGCFFDS 223

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSHALGI 244
           AV T +   HL     +E   + K ++F      G          +  +        +  
Sbjct: 224 AVFTNLTQDHLDYHKNMESYWAVKKKLFTESLAAGPKKEKAFTVINCDDERGKALSGILS 283

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 G     D      +  +      +     +  +    +G H  +N++   G+ S
Sbjct: 284 TKCIKTGSDSECDIYASNSRIDTLGIKALISTPESTFSIESELVGKHNIENIMSAAGVAS 343

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   K +       GR ++         +     + +A         +VL  + 
Sbjct: 344 GLGISSEIIKKGIKSLSVIPGRLEKINNEAGISVYVDYAHTPDA-------LKNVLLSLR 396

Query: 365 PHGEGRRIAVLGD-----------MCEM-GELSQ---------------SFHIDLAEVLS 397
           P  +GR I V G            M E+ G+LS                     +   + 
Sbjct: 397 PIVKGRLICVFGCGGDRDKTKRPLMGELAGDLSDFAVITSDNPRTEDPTEIINQIITGIK 456

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              I           +L                        +    GDVV++  K 
Sbjct: 457 RNKIDR---YEPTAPSL---FSDKKGYVVEPDRKKAIHLGINIAKAGDVVLIAGKG 506


>gi|188584682|ref|YP_001916227.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349369|gb|ACB83639.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 518

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/496 (15%), Positives = 158/496 (31%), Gaps = 57/496 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQ----------GFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           +   LLQ                        ++GI+ +S+ + P + F A +G   D HD
Sbjct: 12  SLKKLLQNTSPELFTEFADLGTTGTDIEGVTISGITDNSKEVTPGKIFVACQGTKVDAHD 71

Query: 56  FILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +I  A+  GA  V++   D +  +   +IP F V +    L KLA          +I   
Sbjct: 72  YIEEAIANGASTVILERADYIDKVKDSAIPYFKVRNGRKTLAKLASTFYDHPSHRLIVTG 131

Query: 115 GSVGKTTTKEM-----------LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            +     T              +   L            +++ +  P       +     
Sbjct: 132 ITGTNGKTTTTTLIDYIINQLGVKSGLIGTVNCKINGEEFDSKLTTPPATELYSLIEKMV 191

Query: 164 IFEL-----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             E+      +S  G  +     +   IA IT I+  H+      ++   +K + F+ L 
Sbjct: 192 QKEVKYLTKEVSSHGLKQDRVSAINFDIAGITNISYDHMDFHDSWDDYFKSKTKFFQMLS 251

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---------NADFQLRKWKQCSEQ 269
                 LN DD     +  K+ +  I    S   +            +       +    
Sbjct: 252 PDSISVLNADDPNAISMGDKTRSKVITYGISSPGAMITAENVDLKPFETSFTYQIKEELP 311

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +     ++ +S  +     G H   N L+ + +  +   D +  IK    F     R   
Sbjct: 312 TVTNKPVRPQSHNLKIRMPGKHNIYNTLLAISVCIMAGFDPEQVIKTAEQFPGLFRRL-- 369

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               + +  FT+ID+    NPAS+++    +SQ+  +      A+ G   +   L  S  
Sbjct: 370 --EVIYKNSFTIIDDC-AHNPASIRSVFETISQLPFNRLVIVFAIRGSRGDQINLENS-- 424

Query: 390 IDLAEVLSLYNISHVWLS--------------GFHVLALKDALPRSIHVHYSETMDGLFL 435
             L + ++   +  + ++                    L           +   ++    
Sbjct: 425 QRLVKWVNHLPVRELIITTSKSHAAPTNQVHSSEQTAFLSPLKTSGTPFKFIHNLEETIE 484

Query: 436 FIQSSLVDGDVVVVKS 451
              + +  GD++++  
Sbjct: 485 TALNEVKQGDLLMILG 500


>gi|224534279|ref|ZP_03674857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
 gi|224514381|gb|EEF84697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia spielmanii A14S]
          Length = 505

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKYVKGSL-----NLEISGVTYSSKLVLPRFVFFALPGIRFDGHDFIEMAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDL--DFYSPNVTYIKVDDFSIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         + +     G                          +   V + +
Sbjct: 127 YYIYLLLKKRGIKVGFVSTVFFDDGSGSLIKNPYRQSTPESTEIHAFLSNMVKNGVQYAV 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I    + K  +F+ +       
Sbjct: 187 LESTSHGLDFETARLIDVNYFAAVFTNIGHDHLEFHGTIRNYVNVKLGLFQSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  ++  +       K+     K+  ADF +    + ++ +  E   +G      
Sbjct: 244 GFGVINLDDVYSSDFKNAIKKSFTYSLKNSQADFFVSFIDEKTDSTRFEFYYKGIKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS L       I    V       G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSKLLNIDIQDIVDELVCIKSLD-GRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   +S      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFAINRLISVFGSAGE----RDVAKRFLQGQISDIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +   +    + +            S    GD+V
Sbjct: 414 LLCDEDPRGENSMCIIKDIAKGIVNKVVNRDLFFIPDRRQAIEKAISLARAGDLV 468


>gi|254526867|ref|ZP_05138919.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
 gi|221538291|gb|EEE40744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9202]
          Length = 511

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 146/480 (30%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL          +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLAGIIPSSNLIDQDINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAV--AARLRSKATIIAITGSVGKTTT 122
             ++       IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGPAAKQKIGSIDRKRILVIDDNLDYIFGQIVAEFWHRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G             ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE---IFEGLEKTGTIFL 225
           +S     +          AV T +   HL   S +E     K +        EK G   L
Sbjct: 186 VSSHSIAQKRISGCEFEAAVFTNLTQDHLDYHSDMESYFQTKRKLFLPPYLNEKDGISVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N+DD +   L     K  +L    I       +  F +   K     S        + ++
Sbjct: 246 NHDDPWISKLSSDLEKRSSLVSTKITESEFKNHDFFFVTDKKFTENGSTCIFHTPKEKIQ 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++     +    +L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDFSRSLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    +G+ I V G     G         L   ++     
Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDLGKRPLMGSIAEEFSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++++  +            +   + +   +                    D+V++  K 
Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKRKKITIEIDRFKAINESIKFANKEDIVLIAGKG 480


>gi|329118763|ref|ZP_08247461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465110|gb|EGF11397.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 496

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/449 (18%), Positives = 148/449 (32%), Gaps = 39/449 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+ D+
Sbjct: 29  DSRQIKAGDIFLACQGEYADGRSYIPAAIANGASFVFWDDDGAFQWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLAVAARLR------SKATIIAITGSVGKTTTKEMLTIALSSI-----------K 134
                 LA            S   I  +TG+ GKT+  + L  A   +            
Sbjct: 89  KHRAGILAARLYGNVSDGLSSPLKIWGVTGTNGKTSITQWLAQAAGLLGDKTAIIGTVGN 148

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITT 191
             +  +    +    P+ +  +             + +S  G  +   + V    AV T 
Sbjct: 149 GFWGALEDTTHTTPAPVEVQSLLHRFRKQGATAAAMEVSSHGLDQARVNGVPFQTAVFTN 208

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E   + K+ +F        +  + D    EL+           +YS+G
Sbjct: 209 LTRDHLDYHGTMEAYGAIKSRLFYWRGLKHAVINSDDPYGAELIGRLKADRPDLAVYSYG 268

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             + AD ++  +   S+   + +        V    +G   AQN+   +G++      +D
Sbjct: 269 FGEQADIRITGFAAASDGMEVALDTPWGKGSVKTRLLGRFNAQNLAACVGVLCADGHPLD 328

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             + AL    P  GR      +            Y   P +++ A++ L +I P G    
Sbjct: 329 KVLAALEKIRPATGRMDCIIESGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALW 384

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSIHVH 425
             V G     G         L    ++     V ++  +         + D LP      
Sbjct: 385 C-VFG----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPADIIADILPAVPAPE 439

Query: 426 YSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
             E        F   +    D++++  K 
Sbjct: 440 CVEADRKAAIGFAVKNAASDDIILIAGKG 468


>gi|251792018|ref|YP_003006738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533405|gb|ACS96651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aggregatibacter aphrophilus NJ8700]
          Length = 488

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 143/468 (30%), Gaps = 44/468 (9%)

Query: 17  HSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           H +GI  +G VN I  ++DSR+      F AIKG   DG  +I  A+Q GA  V+   D 
Sbjct: 6   HLLGIDIEGDVNLIHMTLDSRTAKAGCLFIAIKGHQTDGRQYIPQALQNGASAVIFEADS 65

Query: 75  VASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
                 +    ++P+     +   L++LA          +  +  +     T     +A 
Sbjct: 66  AQQHLQIHYEQNVPLIAFYQLSENLSRLADVFYQSPSKRLTLVGVTGTNGKTTTTQLLAQ 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGE 174
            +    +          G+   +          +                  + +S  G 
Sbjct: 126 WTQLLGHTSAVMGTIGNGLFGQVKEAANTTGSAVEIQASLADFVAQGADFAAIEVSSHGL 185

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     V    AV T ++  HL     +E  A+AK  +F  L+    I    D      
Sbjct: 186 VQHRVEGVHFSAAVFTNLSRDHLDYHHSMENYAAAKKRLFTELDSRNQIIDADDPIGAAW 245

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+   +A+ + T   F   +    +        + + ++        E+    IG     
Sbjct: 246 LRELPNAVAVSTNPDFSPQQTQWLKAVDVHFHHKGAVIKFASSWGDGELHSALIGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+    +  L   +   + +++      GR +                + +A      
Sbjct: 306 NLLLVTATLLTLGYSLSELVNSVNKLTGVCGRMEMLTATHKPTVIVDYAHTPDA------ 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410
                L     H  G+   + G     G         L   ++     HV  +  +    
Sbjct: 360 -LEKALQAARLHCHGKLWCIFG----CGGDRDRGKRPLMAGIAEKLSDHVIATDDNPRTE 414

Query: 411 -----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  +         V      +        S V+ DV+++  K 
Sbjct: 415 DHTQIMADILKGFINPQAVQVIHQREEAIATAIKSAVENDVILIAGKG 462


>gi|218295703|ref|ZP_03496499.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
 gi|218243862|gb|EED10389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermus aquaticus
           Y51MC23]
          Length = 486

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 89/479 (18%), Positives = 139/479 (29%), Gaps = 65/479 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG----PHY--DGHDFIL 58
            T  +L   +        P   V G++ DSR + P   F A+ G         DGH FI 
Sbjct: 1   MTLKELFAPLG----QEAPPLPVRGLTQDSRRVEPGFVFVAVPGVPLPHRRPLDGHAFIP 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            A+++GA  VV   D+      L +P   V D   AL  LA            +  +TGS
Sbjct: 57  EALRRGAIAVVGEQDLT-----LPVPYARVADSRQALALLARRFYGEPDRALRLFGVTGS 111

Query: 117 VGKTTTKEMLTIALSSI----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            GK+TT  +L   L                      +      P   A +    D G+ E
Sbjct: 112 KGKSTTAFLLHHLLEEAALLSTVGLRLGGEARPPIGHFTTPEAPEVYAFLREAADRGLRE 171

Query: 167 L---GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                 SH   ++ +  L       +      HL      E   +AK  + E  +     
Sbjct: 172 AVLEVSSHALALKRVEGLTFRVGVFVNFYPDDHLDFHGTPEAYFNAKTLLVERSD----- 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                     +L      L                   +  +  E     +       EV
Sbjct: 227 --------LAVLNTSLTHLERLRQRPHLLFGPGGEVWAEGVREEEGLRFTLHTPWGKGEV 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  +N L            ++  ++ LS F    GR         + F  +ID
Sbjct: 279 HLPLIGAHNVENALAASAAALAAGVPLEKVLERLSGFPGVPGR---MEVVQEKPFRVVID 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++             L  + P  +GR + V+G     GE       D+  V +      
Sbjct: 336 FAHTGKSLEA-----ALRTLRPTTQGRLLLVVGAA---GERDPRRREDIGRVAARLADKA 387

Query: 404 VWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +    H      A+                     +   L       +GD V++  K 
Sbjct: 388 FFTEEDHRTEDLGAILEAMARAAAAEGGRFELVPDREEAILKAILEAQEGDTVLLAGKG 446


>gi|56707568|ref|YP_169464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110670039|ref|YP_666596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134302497|ref|YP_001122467.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187931371|ref|YP_001891355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|224456637|ref|ZP_03665110.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254874387|ref|ZP_05247097.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56604060|emb|CAG45053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320372|emb|CAL08436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis FSC198]
 gi|134050274|gb|ABO47345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|187712280|gb|ACD30577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Francisella tularensis subsp. mediasiatica FSC147]
 gi|254840386|gb|EET18822.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158724|gb|ADA78115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. tularensis NE061598]
          Length = 479

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/475 (12%), Positives = 137/475 (28%), Gaps = 48/475 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +          +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    + +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +            ++          +  + +    F   +   GD++++ +S  
Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 451


>gi|261379348|ref|ZP_05983921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
 gi|284797788|gb|EFC53135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria subflava NJ9703]
          Length = 492

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 145/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D         ++P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGATFVFWDDDGKFTWNPEWNVPNQGIKDL 88

Query: 92  LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYA 138
                 LA            +  +TG+ GKT+  + L  A   +              + 
Sbjct: 89  KHRAGMLAAQVYGNVSDSLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG---IFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +    +    P+ +  +             + +S  G  +   + V    A+ T +   
Sbjct: 149 TLEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL            +Y +G S+ 
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLQHAIINVDDEYGAELAGRLKKDCPDLAVYGYGFSEQ 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q      +     +G   AQN+   + ++      ++  ++
Sbjct: 269 ADIRITDFTASSDGMEAVFQTPWGEGKCRTRLLGRFNAQNLAACVALLCANGYPLNNVLE 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP   +    E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVSNPERVEV 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAVAIRYAVEQAAANDIILIAGKG 464


>gi|238754431|ref|ZP_04615786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
 gi|238707260|gb|EEP99622.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia ruckeri ATCC 29473]
          Length = 490

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 143/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+   + +A+  S+     +PV 
Sbjct: 21  TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGIAADASITAMHGVPVI 80

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L++LA     +      +I +TG+ GKTTT ++L     ++ + +       
Sbjct: 81  YLSNLNQHLSRLAGQFYQQPGAALRLIGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 140

Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                         +  + +S  G ++     +    AV T
Sbjct: 141 NGLLGQVIPTENTTGSAVDVQQVLHSLVEQGATVAAMEVSSHGLVQNRVAALPFAAAVFT 200

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +     AK  +F   +    I    DD     L     A+ +      
Sbjct: 201 NLSRDHLDYHGDMASYELAKWLLFSTHQSEHKIINADDDVGLRWLSQLPQAVAVSMENKV 260

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +  +  +            + +         ++    +G     N+L+ L  +  L   
Sbjct: 261 PQGWSGPWLSASHVDYHDNGATINFDSSWGKGQLDSRLMGAFNVSNLLVALSTLLSLDYP 320

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + A     P  GR + +              + +A           L+    H +G
Sbjct: 321 LADLLAAAPQLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 373

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 374 QLWCVFG----CGGDRDKGKRPLMGAIAEQLADRVVVTDDNPRSEEPQAIVADILGGLMD 429

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V                  + DVV+V  K 
Sbjct: 430 AGRVLAIHGRAEAVTSAIMQAKEDDVVLVAGKG 462


>gi|189485182|ref|YP_001956123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287141|dbj|BAG13662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6- diaminopimelate
           ligase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 510

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 156/481 (32%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL       IG      V+G+S DSR I    AFF++ G + DG  +I  A+  G
Sbjct: 1   MKLRELLSDESAFVIG-DEDTEVSGVSYDSRKIEKDYAFFSLPGHNTDGRKYIAEAIANG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A +++ ++    +     +    + D+   ++               I+ ITG+ GKTT 
Sbjct: 60  ASVIITDSKYDTN----DVAQVVIKDIFRFMSLFGAKFYNYPDRELNIMGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------GVP-----LTLARMPVDVDFGIFELG 168
             M+   L++       IG+ N              P       + R   +       + 
Sbjct: 116 TYMIESILANSGIECGVIGTVNYRYKGKVIEANNTTPQSLDIYRIMRDISNNGIKYLVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE----GLEKTGTIF 224
           +S         + +    AV T +   HL     ++    AK+ +F+    G +      
Sbjct: 176 VSSHALSLGRVYGIEFDTAVFTNLTREHLDFHKNMDRYFEAKSALFKELGAGKKNNKKCA 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +   D  +     K        +YS  +   ADF+    K  ++ +   +    K   + 
Sbjct: 236 IINVDDEYGRKLLKVGISAEIKLYSAIEKNAADFKASNIKVTNKGAVFNLVFCNKRARIR 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H   N L  L          + A++ L+      GR ++           +   
Sbjct: 296 IKHIGVHNVYNALAALAAAVCSEISFENAVEGLNNSSRVPGRLEKVNTIGLGFEIVVDYA 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +    S      VL  +      R I V G     G         L   +++     V
Sbjct: 356 HTDDALES------VLRALKDLNPKRIIIVFG----CGGDRDRAKRPLMGKIAVEMSDFV 405

Query: 405 WLSGFHVL---------ALKDALPRS--IHVHYSETMDGLF-LFIQSSLVDGDVVVV--K 450
           +++  +            ++  + R+   +       +      I  +   GD++++  K
Sbjct: 406 FVTSDNPRTEDPYQIILDIEVGIKRAGKKNYKVVVDREAAIKEVIMMAADKGDIILLAGK 465

Query: 451 S 451
            
Sbjct: 466 G 466


>gi|225552266|ref|ZP_03773206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
 gi|225371264|gb|EEH00694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia sp. SV1]
          Length = 508

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKCVKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDV--DFYSSNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +  +  + I
Sbjct: 127 YHIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSNMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   +       K+     KS  ADF +    + ++ +  E   +G      
Sbjct: 244 GFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDFTRFEFYHKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNSDIQDIV-DKLDCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFTTNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 VLCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|300767780|ref|ZP_07077690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494765|gb|EFK29923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 550

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    I                         D       + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   HL     + +     +                     +  + +  +      
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG   +A    +  +  S  +  ++ + G    V    IG     NML       
Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  IK+L      +GR +                + +         ++ L  I 
Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417
                    V+G     G+  ++    +A++   ++   ++ S          + +   A
Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V   E           +   GDVV++  K 
Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519


>gi|291296876|ref|YP_003508274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
 gi|290471835|gb|ADD29254.1| UDP-N-acetylmuramyl-tripeptide synthetase [Meiothermus ruber DSM
           1279]
          Length = 481

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 158/480 (32%), Gaps = 63/480 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFI 57
           + T  +L     G      P   V G++ DSR + P   F AI G        +DGHD+I
Sbjct: 1   MPTLQELF----GLFGQTAPALEVRGVTHDSRLVQPGFVFVAIPGVPLPSRKPFDGHDYI 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
             A+Q GA  VV   ++      LS+P   V D   AL  L  A       +  ++ +TG
Sbjct: 57  PQAIQNGAVAVVGMREL-----HLSVPYLRVADARAALADLSAAFWGYPAQRLELLGVTG 111

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFEL------ 167
           S GKTT   +L   L   +     + +    IG                 + E+      
Sbjct: 112 SKGKTTVAVLLHHLLQRARPPVGRLSTVGIKIGEEELFLPGHFTTPEAPQVQEMLHRFVQ 171

Query: 168 --------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                    +S           +   + V T +   HL     +E   + K ++    E+
Sbjct: 172 AGCRQAVLEVSSHALALERVRGLEYRVGVFTNLYQDHLDLHGSMENYFAEKKKLL---ER 228

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +    +N D+ + + L+ +          ++   +  D+Q     + S     EV     
Sbjct: 229 SRFAVVNSDNPWTQTLRGR--------PQTWSYGQQGDWQAHNLVESSTGLEFEVVSPMG 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G   A+N L  +   + +   V+   + L+ F    GR    +      F 
Sbjct: 281 RFAVRLPMVGRFNAENALAAMAAAAQVGLSVEQIQEGLAGFPGVPGR---MQLVQAAPFR 337

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++             L  + P  +GR + V+G     G    S  + + +V +  
Sbjct: 338 VVVDFAHTGASLEA-----ALQTLRPTTQGRLLVVIGAA---GNQDPSRRVGIGQVAARL 389

Query: 400 NISHVWLSGFH--------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               ++    H        + A+  A                  +       GD ++   
Sbjct: 390 ADLAIFTEEDHRTEPLEAILEAMAQAHGDPRRYVLIPDRREAIRYAIQEAQPGDTLLFSG 449


>gi|91205667|ref|YP_538022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
 gi|122425514|sp|Q1RI81|MURE_RICBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|91069211|gb|ABE04933.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           [Rickettsia bellii RML369-C]
          Length = 474

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 158/479 (32%), Gaps = 64/479 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L             +  V G+S +S++I   +AFFAIK    +G+DFI  A
Sbjct: 1   MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +        + +  V  V+D+   L++       +   T+IA+TG+ GK+
Sbjct: 44  LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE--- 166
           +    +    S I +  A IG+    +           G+  T       +   + +   
Sbjct: 99  SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                  S  G  +     ++ ++A  T+ +  HL      E    AK ++F        
Sbjct: 159 DYLAFEASSHGLDQQRLGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDG 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +   D                     G + N            +   +      K+ +
Sbjct: 219 IAILNSDIEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSL--KGQNINFIFDNKNYD 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+    V   + D    I AL+     +GR +R         +   
Sbjct: 277 FDTPIIGSFQASNLLIAGPSVYYTSFDFSKVINALTKVKAVKGRMERVNRTNIFIDYAHT 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            ++       +K              G+   + G     G    +    L   ++     
Sbjct: 337 PDALEKALTELKNI--------KAKGGKLSIIFG----CGGNRDTTKRKLMGKIAASIAD 384

Query: 403 HVWLSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V ++          A++  +   I   +            +  ++L   D++++  K 
Sbjct: 385 NVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAGKG 443


>gi|258620871|ref|ZP_05715905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
 gi|258586259|gb|EEW10974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM573]
          Length = 495

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 155/480 (32%), Gaps = 42/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN      +L+      +   +    ++ + +DSR I   + F AI+G   DG  FI  A
Sbjct: 1   MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA +V+   D   + G +     +PV  + ++   L++LA       +  +I +TG+
Sbjct: 61  IAQGANIVLAEADAHHAHGQVEFREGVPVIYLAELGQHLSELAGRLYGGHQNQLIGVTGT 120

Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162
            GKTT  +++   L       ++  T               T   + +            
Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S  G ++     +     V + ++  HL     ++  A AK  +F        
Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D    + +K   HA+G+  +     ++    +    +       ++        E
Sbjct: 241 IINVDDAVGAQWVKQLPHAIGVSLLVQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+L+ L  +  L  +    +       P  GR + ++           
Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  G+  A+ G     G         +   ++     
Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L      H          +   +    D++++  K 
Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPERAHIEHNRFHAASYALQNAGAQDIILLAGKG 467


>gi|89255900|ref|YP_513262.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156501883|ref|YP_001427948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|167009665|ref|ZP_02274596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FSC200]
 gi|254368738|ref|ZP_04984751.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953388|ref|ZP_06558009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|295313392|ref|ZP_06804000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica URFT1]
 gi|89143731|emb|CAJ78930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella tularensis subsp. holarctica LVS]
 gi|156252486|gb|ABU60992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|157121659|gb|EDO65829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 487

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/475 (12%), Positives = 137/475 (28%), Gaps = 48/475 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    +  F A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSVFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +          +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTLDILSLYKTISYYKNYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    + +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +            ++          +  + +    F   +   GD++++ +S  
Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILL-ASKG 451


>gi|254230423|ref|ZP_04923803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262395264|ref|YP_003287118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|151937056|gb|EDN55934.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
 gi|262338858|gb|ACY52653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. Ex25]
          Length = 493

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/462 (16%), Positives = 152/462 (32%), Gaps = 52/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG +FI  A+++GA  V+     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGHVVDGRNFIASAIEQGANAVLAQACEVKAHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYLDTLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLGHKAAV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
           +G+  N  G    L +        +                  L +S  G  +     + 
Sbjct: 142 MGTTGN--GFLDNLQQAANTTGNAVEIQKTLSSLANQHATYTALEVSSHGLTQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSH 240
               V T ++  HL     +EE A+AK E+F   +    I    D    ++   L     
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLELFTQHQCERAIINVDDEVGHAWATQLSNAIA 259

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                           D +  +         ++   +  S ++    IG   A N+++  
Sbjct: 260 VSLKPNTEFESAIWATDVRYAE-----SGITIQFDGKFGSGQLHAPLIGEFNATNLMLAF 314

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +  L  D    ++      P  GR + ++             + +A           L
Sbjct: 315 ATLLSLGKDKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKAL 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--------- 411
             +  H EG+  A+ G     G    +    +   ++      V L+  +          
Sbjct: 368 QALRVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIV 423

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L +               +   +    D++++  K 
Sbjct: 424 KDMLSGLSKPAEAIVQHDRFKALSYAVENASPKDIILLAGKG 465


>gi|326790675|ref|YP_004308496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
 gi|326541439|gb|ADZ83298.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium lentocellum
           DSM 5427]
          Length = 487

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 163/477 (34%), Gaps = 53/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL  +    +    +  V  I+ D+R++     F  +K  + D H F   A+++GA 
Sbjct: 6   LVDLLAGVDYKVLQGKIEHEVKHIAWDTRTMVEGALFICVKNRNVDRHCFAQEAIKQGAT 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
           ++++  ++        + +  VDD   A++ +A     +      +I +TG+ GKT+   
Sbjct: 66  ILMIEHEI--DQVPEKVTIIQVDDSRKAMSIIAQNYYEKPGEALKMIGVTGTNGKTSITH 123

Query: 125 MLTIALSSIKKTYACIGSYNN------------HIGVPLT-------LARMPVDVDFGIF 165
            +   LS++ +    IG+  N            +   P            +     +G+ 
Sbjct: 124 FIAQVLSTLGEKTGVIGTIRNTLEGEKLKTKKINPTTPDAIELQASLKEMLDKGATYGVM 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  S L + R      +  + V T +   HL     +E   +AK ++F+          
Sbjct: 184 EVTSSALAQNRVYGMAYQ--VGVFTNLTQDHLEEHGTMEAYGAAKLKLFKN-------CR 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +L+  K    G   + ++G  K ADF+  +  Q       ++   GK   +  
Sbjct: 235 IGIVNQDDLMAEKIKQEGHCKVITYGIDKKADFKAEQIHQGLTGVDFKLIYLGKQYSINF 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L T+  +  L  ++   ++AL   +   GR +                 
Sbjct: 295 PVPGRFSVYNALATIATLVSLGYELTNILEALHWINEVPGRFQIIPNTKGVLVVVDYA-- 352

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 S  +   +L        G+   V G     G+   S   ++  +   Y+   + 
Sbjct: 353 -----HSPDSLKQLLQTTKDLISGKLTVVFG---CGGDRDTSKRAEMGTMAGAYSDLTII 404

Query: 406 LSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S          +   + + I          +      +   +   +GD VV+  K 
Sbjct: 405 TSDNPRNEKPEQIMADIEKGILEVKGRYEMIKNRKLAIVAALAEAEEGDAVVIAGKG 461


>gi|238923850|ref|YP_002937366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
 gi|238875525|gb|ACR75232.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium rectale ATCC
           33656]
          Length = 495

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 150/474 (31%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       ++ +  DSR +     F  I G   D HDFI   V+KG
Sbjct: 6   MKLEKLLERMDYKVLAGSTDIEISTLVYDSRKVEKASVFVCISGAVSDAHDFIPDVVKKG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV  D+    G   +    VD+   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 66  AAAVVVEKDVTPIEG---VTYIKVDNTRLALACMSAAYFDYPAEKIKTIGITGTKGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             M+   L S       IG+  +  G              R+       + E      + 
Sbjct: 123 TYMVKSILESAGIKTGLIGTIESICGDKRIPSANTTPESYRVQELFKEMVDEGLDAVVME 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +          I V T + P H+      +      A+                
Sbjct: 183 VSSQALMLHRVSGFTFDIGVFTNLEPDHIGEHEHKD-----FADYMHCKSLLFRQCRLGI 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +             + ++G     +      +   E   + V+     +      +
Sbjct: 238 FNGDDEHLEGVMKGHTCQVETYGYKSTNNLIAENVELKKEHGALGVKYHVSGLLDFDVEV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  ++I               H    +G+     + + +  +ID ++NA
Sbjct: 298 NVPGKFSVYNSLTAIAICHHFNVDKKAIGEALHHVSVKGRIEIVPVTKRYTLMIDYAHNA 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  S+L+ +  +  GR + + G     G  ++S   ++ EV S      V  S 
Sbjct: 358 -----MALESLLTTLKEYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSRLADLTVVTSD 409

Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +   +  DGD++V+  K 
Sbjct: 410 NPRDEEPMDIINDILQGVHKADGEYVTIPDRKEAIRYCMENAKDGDIIVLAGKG 463


>gi|261365117|ref|ZP_05978000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
 gi|288566549|gb|EFC88109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria mucosa ATCC 25996]
          Length = 492

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 144/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        I    D+   EL+           +Y +G S++
Sbjct: 209 HLDYHGTMEAYGTIKSRLFYWHGLKHAIINVDDEYGAELIGRLKKDCPDLAVYGYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGATAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYSVERAAANDIILIAGKG 464


>gi|318607132|emb|CBY28630.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 496

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 140/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL           P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV   D VA   S      +PV  + ++   L+KLA     +  A +  +  +     
Sbjct: 61  AAVVAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     +    AV T ++  HL     +    +AK  +F   +    I  
Sbjct: 181 AMEVSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +     N  +    +       + +         ++ 
Sbjct: 241 ADDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSWGESQLE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   + A     P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A   ++ AA         H +G+   V G     G         L   ++      V
Sbjct: 361 TPDALEKALVAA-------RLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  + H                     DVV++  K 
Sbjct: 410 VVTDDNPRSEEPQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 467


>gi|156973216|ref|YP_001444123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi ATCC BAA-1116]
 gi|156524810|gb|ABU69896.1| hypothetical protein VIBHAR_00897 [Vibrio harveyi ATCC BAA-1116]
          Length = 493

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/459 (15%), Positives = 141/459 (30%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +         
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWID--LVGSKA 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
                   G    L          +                  L +S  G I+     + 
Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +    +    D       K  ++AL 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    +     +                +E   +     +    IG   A N+++    +
Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       +       P  GR + ++   N         + +A           L  +
Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQANDNAKVVVDYAHTPDA-------LEKALQAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H  G   A+LG     G    +    +   ++      V L+  +         +  +
Sbjct: 371 RVHCHGELWAILG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKGM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +        D++++  K 
Sbjct: 427 LAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|224368379|ref|YP_002602542.1| MurE [Desulfobacterium autotrophicum HRM2]
 gi|223691095|gb|ACN14378.1| MurE [Desulfobacterium autotrophicum HRM2]
          Length = 514

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 144/471 (30%), Gaps = 60/471 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I  DSR + P   F A++G   DGHD++  A+++GA  VVV   +         
Sbjct: 27  DPEITSIHNDSRDVKPGGLFIAVRGFKIDGHDYVEDALERGAAAVVVQQRVPGKQ----- 81

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
            +  V D   A+  +A            ++ ITG+ GKTTT  +L    +          
Sbjct: 82  RMVEVADTRKAMASIAARFYDNPSESMCLVGITGTNGKTTTSFILESIFAQAGHCVGVIG 141

Query: 137 ----YACIGSYNNHIGVPLTLARMPVDVDF---GIFE--LGMSHLGEIRFLTHLVRPHIA 187
                     +NN +  P ++    +        +    + +S            R    
Sbjct: 142 TVNFRYRGKLFNNPVTTPESIDLQRILAQMKAAQVSHVVMEVSSHSIDLHRVRNCRFDAG 201

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI--FLNYDDSFFELLKAKSHALGIK 245
           V T +   HL     +    + K   F  +  +G          +  +            
Sbjct: 202 VFTNLTQDHLDYHRTMGRYFACKRRFFTRILPSGPKALTAMAVINLDDEKGQALRDAAAT 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + + G+   AD       +    +   +++ G         +G    +N+L   G    
Sbjct: 262 KVVTTGRDSRADVCALDLAETITGTTGILKIDGAPYPFSSALVGAFNVENILSAAGAAHA 321

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D    ++ +       GR +R      +  F      Y   P ++ + +  L   +P
Sbjct: 322 IGIDPQVIVRGIEGCKGVPGRLERVEPDNGRHVFVD----YAHTPDALMSILETLKAQAP 377

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
                 I V+G     G         +   ++        ++  +  +      +++ L 
Sbjct: 378 KR---IITVVG----CGGDRDRSKRPIMGQIAATLSDVAIITSDNPRSEDPHGIIQEILK 430

Query: 420 ---------------RSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV---KS 451
                          ++ +  + E           ++   GD ++V   K 
Sbjct: 431 GIDTALCPELKPDQLKTGNGFFVEPDRRKALELAVAASTPGD-ILVAAGKG 480


>gi|282857254|ref|ZP_06266494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
 gi|282584904|gb|EFB90232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pyramidobacter piscolens W5455]
          Length = 499

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 148/471 (31%), Gaps = 51/471 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL  I G    I     +     DSR++ P + F  + G H DGH FI   ++ G   ++
Sbjct: 17  LLTDIGGDWNKIPADCTLKS---DSRTVGPGDIFACVVGLHADGHRFIEQVLKAGVSYLL 73

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
           +   +      L IP   V DV  A+  +A A       K  + A+TG+ GK+TT  M+ 
Sbjct: 74  IQRPVSG----LPIPWIQVTDVRAAMGYVAAALNEEPSEKMKMFAVTGTQGKSTTSYMVR 129

Query: 128 IALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLG 173
             L +       +G+     G                    +  VD       +  S  G
Sbjct: 130 SILQNCGVKCGLLGTIVYDDGSKSVLADRTTPEGSEIQQFLKNMVDNGCQACSMECSSHG 189

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             +          AV T + P HL     +E    AKA +F    K              
Sbjct: 190 IAQGRLSGCLYDGAVFTNLTPEHLDFHGTMENYYEAKAALFRKYLKP----GAAVAPNAA 245

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHM 292
               +  A       ++     A  Q    K   + S  + +    K   V     G H 
Sbjct: 246 SEHGRRLAAEFPQAMTWALEAPARLQGANVKLDIDGSEFDLIFDGRKMGRVHIPLSGRHN 305

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N L    +      D    +  L++     GR +R               + ++    
Sbjct: 306 VENALGAAAVCLAEGCDEKKVVAGLALMPQVPGRMERLNLDNGVRVVIDYAHTADS---- 361

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----- 407
                ++L  + P  EGR +++ G     G    + H  L    +      ++++     
Sbjct: 362 ---LKALLETLRPLTEGRLVSLFGH----GGDRFAGHRSLLGRAAAQKADRIFVTMDNPR 414

Query: 408 GFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVVKS 451
               L + + +   I    ++         D            GD++V+  
Sbjct: 415 TEDPLKIAEQIVAGIEEVRADGCWSIELPRDAAICKALDWCRRGDLLVLSG 465


>gi|23009655|ref|ZP_00050624.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 252

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 117/253 (46%), Positives = 148/253 (58%), Gaps = 10/253 (3%)

Query: 1   MN--PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M   PLW    L  A  G  IG      + G SID+RS+ P + FFAI+G   DGHDF+ 
Sbjct: 1   MTDAPLWIPSALEAATGGRLIGEP--RAIRGASIDTRSLEPGDLFFAIRGEARDGHDFVQ 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGV-----DDVLGALNKLAVAARLRSKATIIAI 113
            A+ KGAG  VV             PV  V     D VL A+ +L +AAR RS+A I+A+
Sbjct: 59  AALDKGAGAAVVAASRADDCAGAG-PVLAVPEGGEDPVLDAMRRLGLAARARSRAAIVAV 117

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGSVGKT TKE L   LS+   T+A + SYNNH GVPLTLARMP    FG+FE+GM+H  
Sbjct: 118 TGSVGKTGTKEALRHVLSAQGATHASVASYNNHWGVPLTLARMPEAAQFGVFEIGMNHGA 177

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           EI  LT +VRP +A+ITT+ P H+ +F  +  IA AK EIF GL+  G   +N D++ FE
Sbjct: 178 EILPLTAMVRPDVALITTVEPVHIEHFRSLSAIADAKGEIFSGLKPGGVAVINRDNANFE 237

Query: 234 LLKAKSHALGIKT 246
            L A + A     
Sbjct: 238 RLLAHAQASKAGR 250


>gi|91228509|ref|ZP_01262431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
 gi|91187943|gb|EAS74253.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 12G01]
          Length = 493

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 150/459 (32%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGHVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYIDRLDQRLSAIAGKLYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDDKAAV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
           +G+  N  G    L +        +                  L +S  G  +     + 
Sbjct: 142 MGTTGN--GFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +    I    D+   +   A   +  
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCKRAIINVDDEVGHQW--ASQLSNA 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I           +     +         ++   +  S E+    IG   A N+++    +
Sbjct: 258 IAISLKPNTEFESAIWATEVSYAESGITIKFDGKFGSGELHAPLIGEFNATNLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +    ++      P  GR + ++             + +A           L  +
Sbjct: 318 LSLGIEKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKALQAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LAL 414
             H EG+  A+ G     G    +    +   ++      V L+  +            +
Sbjct: 371 RVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465


>gi|82703614|ref|YP_413180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
 gi|82411679|gb|ABB75788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosospira multiformis ATCC 25196]
          Length = 524

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 153/466 (32%), Gaps = 51/466 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +++DSR++ P + F A +G   DG  FI HA+++GA  VV   D  A       P   V
Sbjct: 34  HLAVDSRTVKPGDTFLAYRGEKTDGRKFIPHAIERGARAVVWERDGFAWDPEWKTPNLPV 93

Query: 89  DDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D+      +A            +I +TG+ GKT+    +  A++++ +  A IG+    
Sbjct: 94  PDLKSEAGFIADYLYDHPSQKLWLIGVTGTNGKTSCSHWIVQAMAALDRKAAVIGTLGA- 152

Query: 147 IGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            G P  +          +                  + +S  G ++   +     +A++T
Sbjct: 153 -GFPGEMEFSANTTPDSVLLQAKIANFLRRGAECVAMEVSSHGIVQGRINGATFAVAMLT 211

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E  A+AKA +F        +    D    +LL            Y F
Sbjct: 212 NLSRDHLDYHGTMEVYAAAKARLFHWRGLKYAVLNLDDVFGMQLLHDLEGTGTGMIGYGF 271

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-----AQNMLMTLGIVSI 305
               +A      +++   ++        +                  + N    LG+++ 
Sbjct: 272 TDPVSAHPNPGSFRRVWGRNLRASMAGLEFDIEFEGECLKFKAEVLGSFNASNLLGVLAT 331

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI-- 363
           L A      +A+      +    R +    +G   LI   Y   P +++  ++ L +   
Sbjct: 332 LLASGIAFPEAVRALQKVQPVAGRMQQIGGEGDEPLIVVDYAHTPDALEKVLTTLREAVD 391

Query: 364 -------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
                     G GR + V G     G         L   ++        ++  +  +   
Sbjct: 392 AGFPGGKPETGSGRLVCVFG----CGGERDQGKRPLMGEVATRLADEAIITSDNPRSEDP 447

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +      +  +   +               GDVV++  K 
Sbjct: 448 DSIIRGIAVGAAANHRIE--KDRAAAIHRAIRGTHKGDVVLIAGKG 491


>gi|85707761|ref|ZP_01038827.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
 gi|85689295|gb|EAQ29298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. NAP1]
          Length = 500

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 146/465 (31%), Gaps = 41/465 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G          V G +ID R +AP   F A +G +++  DFI  A++ GA  +V  ++  
Sbjct: 11  GLPEADAGDATVTGFAIDHRKVAPGTVFGAFRGANFNAEDFIPAAIEAGAVAIVARSEAK 70

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                        ++      +LA      +  TI+A+TG+ GKT+T EM          
Sbjct: 71  VE----GALHIASEEPRRDFAQLAAGFFTPAPETIVAVTGTNGKTSTAEMTRQIWR--MC 124

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------GMSHLGEIRFLT 179
                      +  P       +     +  L                  S  G  ++  
Sbjct: 125 GERAASIGTLGVTTPDGSVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRN 184

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             +R      T  +  HL     ++    A  +       E    I  +  +      +A
Sbjct: 185 EGLRVKAGAFTNFSRDHLDYHETMDAYFEAKMRLFDEVVEEDGKAIIWDGGEECEWTRRA 244

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             HAL  K        +    +L   +       ++V+  G+S +V    IG + A N L
Sbjct: 245 IEHALSRKLHVLTVGERGDFLRLAAREATQLGQVLDVEYDGESRKVKLPLIGAYQAANAL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           ++ G+     A       A+    P  GR     C    G    ID ++  +     A  
Sbjct: 305 VSAGLAIATGAAPAQVFDAIGRLQPVRGR-LERACLTASGAPVYIDYAHTPDALEA-AIA 362

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------G 408
           ++   +     G+ I V G     G    +        ++  +   V ++         G
Sbjct: 363 ALRPHVDGEKGGKLIVVFGA----GGDRDTGKRAPMGKVAADSADLVIITDDNPRGEDPG 418

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+ +    + HV                +   D+++V  K 
Sbjct: 419 EIRAAVLEGAGGADHVRAIGGRREAIAAAIGQVGAHDIILVAGKG 463


>gi|269122823|ref|YP_003305400.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314149|gb|ACZ00523.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
           opimelate/D-alanyl-D-alanylligase [Streptobacillus
           moniliformis DSM 12112]
          Length = 405

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 154/463 (33%), Gaps = 62/463 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN L T  +L   I      +        +SI+S+   P   FFAI      G+D+   A
Sbjct: 1   MNKLNTLEEL---IGKKIFSLKEDFK---VSINSKEATPNSVFFAI----NKGNDYAKEA 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  V+ +   +            V+D +  + + A   R  +K  +I ITGS GKT
Sbjct: 51  ESMGA-FVIYDKKELDIHNGH-----YVEDSVKFMQEFARRYRKNNKFIVIGITGSNGKT 104

Query: 121 TTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T K++L   LS+   + Y   G+YNNHIG+P T+       +  + E+GMS+LGEI  L 
Sbjct: 105 TVKDILHSVLSNKGVRVYKTQGNYNNHIGLPFTILSAKDSDEILLLEMGMSNLGEIDLLG 164

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++ +P  ++IT I  +HL     +E +  AK EI     K   +         +   +K 
Sbjct: 165 YIAKPDYSIITNIGQSHLEYLKTMENVFKAKTEIIPHTSKKVVVNGK------DEFLSKL 218

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +          +   D  L                      +      + + +     
Sbjct: 219 DGVIKVETKDIKTNLLGDHNLLNVSIVDSLLKYMGFDDLCYENIELTDGRFQIVKG---- 274

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                             S    K       +          + +         K    +
Sbjct: 275 -------KYTYINDAYNASPISMKASLETFSKICNESFKIIALGDMLELGSDEKKYHEDL 327

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +      R       M  + E          ++ +L +IS  +    +   +K A+ 
Sbjct: 328 SYVLRETNFDRLFLYGKRMKYLYE----------KLCNLDDISFKFEYFDNKEDIKKAI- 376

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                   + ++ +            VV++K S S     ++ 
Sbjct: 377 --------DNIETIKEK---------VVLLKGSRSMKMEDIME 402


>gi|153835410|ref|ZP_01988077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
 gi|148868066|gb|EDL67241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi HY01]
          Length = 493

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 140/459 (30%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+++GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIEQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +         
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWID--LVGSKA 139

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
                   G    L          +                  L +S  G I+     + 
Sbjct: 140 AVMGTTGNGFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +    +    D       K  ++AL 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    +     +                +E   +     +    IG   A N+++    +
Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       +       P  GR + ++   N         + +A           L  +
Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVVDYAHTPDA-------LEKALQAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H  G   A+ G     G    +    +   ++      V L+  +         +  +
Sbjct: 371 RVHCHGELWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEEPALIMKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +        D++++  K 
Sbjct: 427 LAGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|319424763|gb|ADV52837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella putrefaciens
           200]
          Length = 500

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/487 (16%), Positives = 152/487 (31%), Gaps = 54/487 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL                N +++DSR+I   + F A+ G   DG  FI  A+  
Sbjct: 1   MMLLRDLL----APWFIYSGDQSFNELTLDSRAIRRGDVFLALPGHRVDGRQFIDKALDL 56

Query: 64  GAGLVVVNTDMVASIGS----------LSIPVFGVDDVLGALNK----LAVAARLRSKAT 109
           GA  V+V+TD     G           + I  F ++  + A+      LA    +     
Sbjct: 57  GAAGVLVHTDDADQHGKVLLGDNAERGVQIYFFQLNRQVSAIAAQRYPLAHQFAVTPSLG 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG----- 163
           II ITG+ GKT+T +++   ++S+ +K        N   G  +       D         
Sbjct: 117 IIGITGTNGKTSTSQLIAQLVTSLGRKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLH 176

Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   +  + +S  G ++     V   +AV T +   HL     +E   +AK  +F 
Sbjct: 177 EFEAQGASVCAMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMESYTAAKQSLFR 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  +    D      L            +S    + A F  +  +   +     + 
Sbjct: 237 FSTLGHGLLNLDDPVGETWLIELKDMAAQIWGFSIEGHQAAAFYTKNTQFDDQGVSATLV 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 ++    +G     N+L  L  + +   D++   + +    P  GR +R+  A N
Sbjct: 297 WPEGETQIHSPLLGAFNLSNLLAALSALYLQGFDMEALAEQVQYLTPVAGRMERFTTADN 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    + +A           L+ +  H  G    V G     G         L   
Sbjct: 357 ITLVVDYAHTPDA-------IEQALTALRRHCAGDLWCVFG----CGGDRDKGKRPLMGR 405

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +      + ++  +            +   L                  +      GD+
Sbjct: 406 AAEQYADRIMVTSDNARSEDPAQIISDIIQGLVTPERALTQVDRITAIKDVVGLAKSGDL 465

Query: 447 VVV--KS 451
           +++  K 
Sbjct: 466 ILLAGKG 472


>gi|27467636|ref|NP_764273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57866587|ref|YP_188194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis RP62A]
 gi|251810391|ref|ZP_04824864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875480|ref|ZP_06284351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|293366990|ref|ZP_06613665.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|30315999|sp|Q8CPR2|MURE_STAES RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71151974|sp|Q5HQE6|MURE_STAEQ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27315180|gb|AAO04315.1|AE016746_105 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637245|gb|AAW54033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis RP62A]
 gi|251805995|gb|EES58652.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295507|gb|EFA88030.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus epidermidis SK135]
 gi|291318965|gb|EFE59336.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329733380|gb|EGG69713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU028]
 gi|329738086|gb|EGG74304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus epidermidis VCU045]
          Length = 494

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
            G+VVVN ++       ++    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CGIVVVNRELELK---GNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   +        + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G +  A F  +  K+  +    E      S  V    +
Sbjct: 238 LNNDDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V     +++  I A++   P EGR       L+      +   Y  
Sbjct: 298 GRFNISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHNNYIEFDDRAEGIRHAIDIAEPGDTVVL-ASKG 458


>gi|157826876|ref|YP_001495940.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
 gi|157802180|gb|ABV78903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia bellii OSU 85-389]
          Length = 474

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/479 (17%), Positives = 158/479 (32%), Gaps = 64/479 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L             +  V G+S +S++I   +AFFAIK    +G+DFI  A
Sbjct: 1   MTP--TLKQL-----------FEKHNVKGLSNNSKTIKANDAFFAIK----NGNDFIADA 43

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++KGA LV+ +        + +  V  V+D+   L++       +   T+IA+TG+ GK+
Sbjct: 44  LEKGAALVITD-----DKKNTTNKVIFVEDIKETLHEAIELFYPKKPKTMIAVTGTNGKS 98

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI-----------GVPLTLARMPVDVDFGIFE--- 166
           +    +    S I +  A IG+    +           G+  T       +   + +   
Sbjct: 99  SVVSYIAQIYSLIGQKAASIGTIGVEVFGIDNFNESIGGLTTTDYLSFRKIAHKLAKNGI 158

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                  S  G  +     ++ ++A  T+ +  HL      E    AK ++F        
Sbjct: 159 DYLAFEASSHGLDQQRLGDLKVNVACFTSFSQDHLDYHHTKENYLLAKLKLFTDHLAKDG 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +   D                     G + N            +   +      K+ +
Sbjct: 219 IAILNSDIEEIKFIKDYLDKHKIKYLCVGANGNCKITKTNSSL--KGQNINFIFDNKNYD 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+    V   + D    I AL+     +GR +R         +   
Sbjct: 277 FDTPIIGSFQASNLLIAGLSVYYTSFDFSKVINALTKVKAVKGRMERVNRTNIFIDYAHT 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            ++       +K              G+   + G     G    +    L   ++     
Sbjct: 337 PDALEKALTELKNI--------KAKGGKLSVIFG----CGGNRDTTKRKLMGKIAASIAD 384

Query: 403 HVWLSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +V ++          A++  +   I   +            +  ++L   D++++  K 
Sbjct: 385 NVIVTDDNPRHEDPKAIRQEIISGIVTTNYIEIADRKEAIKYGINNLKKDDILLIAGKG 443


>gi|197285922|ref|YP_002151794.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227356429|ref|ZP_03840817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
 gi|194683409|emb|CAR44155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Proteus mirabilis HI4320]
 gi|227163539|gb|EEI48460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Proteus mirabilis ATCC 29906]
          Length = 495

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 138/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL A+        P   +  +++DSR  A  + F AIKG   DG  +I  A+ +G 
Sbjct: 5   NLSDLLGALGIQ----APSLTLKDMTLDSRKAASGDLFVAIKGHETDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   + +A+ G +     IPV  ++++   L+KLA     +    +  I  +     
Sbjct: 61  CAVLAEAEGIATHGEIRESHGIPVIYIENLNCQLSKLAGIFYHQPANKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAQGLGEVSAVMGTVGNGLLDHIVPAMNTTGSAVDIQLELQQLVNQGATFT 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    +V T ++  HL     +     AK  +F        I  
Sbjct: 181 AMEVSSHGLVQGRVSALPFVASVFTNLSRDHLDYHGDMANYEQAKWLLFSTHHSGEKIIN 240

Query: 226 NYDDSFFELLKAKSHALG-IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D    + L     A+            +    Q  +       + +         E+ 
Sbjct: 241 ADDAVGHKWLTHLPDAVAVTMADKLPANWQGRYVQATQINYHDAGATIHFNSSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  L  +  L   +D  IKA S   P  GR + +              
Sbjct: 301 SPLMGAFNVSNLLCALATLLALEYPLDAVIKASSALTPVCGRMEVFSADNRPTVIVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   + G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCIFG----CGGDRDKGKRPLMGAVAEQFADKV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L         E        +       D+++V  K 
Sbjct: 410 VITDDNPRSEEPQAIIQDILSGLMDPGRALAIEGRAEAVTNVVMQASPADMILVAGKG 467


>gi|308179972|ref|YP_003924100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308045463|gb|ADN98006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 550

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 145/456 (31%), Gaps = 43/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  ++ D+R + P   F A+ G H DGHD +  A+ KGA ++V +  +      +++
Sbjct: 79  DFDVTMLTQDTREVQPGAMFIAVVGYHVDGHDLVDQAIGKGAKIIVASKPL-----DVNV 133

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V++   A+  LA         K  +I +TG+ GKTT   ++       ++    IG
Sbjct: 134 PVIYVENTERAMAILADVFYGAPSQKMRMIGVTGTNGKTTVTHLIEQIYRDQQQATGLIG 193

Query: 142 SYNNHI--------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +    I                         D       + +S +  +      +   IA
Sbjct: 194 TMYRKIKDEKLPTANTTPDAITTQRTLAAMRDAGVETVAMEVSSIALVLGRVWGIDYDIA 253

Query: 188 VITTIAPAHLSNFSGIEEI---ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           V T +   HL     + +     +                     +  + +  +      
Sbjct: 254 VFTNLTQDHLDFHKTMAKYTEAKAMLFAQLGNKYSADGTNKVAVLNTDDPVGREFEQYTA 313

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG   +A    +  +  S  +  ++ + G    V    IG     NML       
Sbjct: 314 AHVLTFGLKPDAMINAQNVEIKSHGTEFDLSVFGHVTHVTMQLIGQFNVYNMLAAFAAAY 373

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  IK+L      +GR +                + +         ++ L  I 
Sbjct: 374 ASGIPEDQIIKSLEKVTGVKGRFQSVPSHTGVSVIVDYSHTPDG-------LLNALETIQ 426

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD---A 417
                    V+G     G+  ++    +A++   ++   ++ S          + +   A
Sbjct: 427 DFATKDIYCVVG---CGGDRDKTKRPKMAKIAVEHSTKPIFTSDNPRTEDPTMILNDMVA 483

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +  V   E           +   GDVV++  K 
Sbjct: 484 GVPNADVPVYEDRHVAIAKAIEAAQPGDVVLIAGKG 519


>gi|219685884|ref|ZP_03540690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
 gi|219672583|gb|EED29616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia garinii Far04]
          Length = 508

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 57/481 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + DM     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDM--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +   V + I
Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGDGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   +AK  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +F +   +       K+     KS  ADF +    +  + +  E   +G      
Sbjct: 244 GFGVINFDDPYYSDFKNAVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADNYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            L             +  +   +   +    + +            S    GD+VVV  K
Sbjct: 414 ILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|261211504|ref|ZP_05925792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
 gi|260839459|gb|EEX66085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC341]
          Length = 495

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 152/484 (31%), Gaps = 50/484 (10%)

Query: 1   MNPLWTFHDL----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           MN      +L    L+              +  + +DSR I   + F AI+G   DG  F
Sbjct: 1   MNTHTALSELIAPWLELTDPKL----ASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQF 56

Query: 57  ILHAVQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           I  A+ +GA LV+   D     G       +PV  + D+   L+++A       +  +I 
Sbjct: 57  IDKAIVQGANLVLAQADAEHPNGVSEYRQQVPVIYLADLGTHLSEMAGRLYGDHQNQLIG 116

Query: 113 ITGSVGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD----- 161
           +TG+ GKTT  +++   L       ++  T               T   + +        
Sbjct: 117 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLSALEPAANTTGNALQIQATLRDLA 176

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                   L  S  G ++     +     V + ++  HL     +E  A+AK  +F    
Sbjct: 177 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 236

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               I    D    + +K    A+G+  +   G ++    +    +       +      
Sbjct: 237 CQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPGTAQAIWARQ--VEYAESGITLNFDSSW 294

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E+    IG   A N+L+ L  +  L  + +  +       P  GR + ++       
Sbjct: 295 GEGELHAPLIGEFNACNLLLALATLLSLGFEKNALLATAPKLRPVLGRMELFQREQKAKM 354

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 + +A           L  +  H  G+  A++G     G         +   ++ 
Sbjct: 355 VVDYAHTPDA-------LEKALRALRVHCAGQLWAIVG----CGGDRDRGKRPMMAAIAE 403

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V L+  +            +   L      H          +        D++++
Sbjct: 404 QFADRVILTDDNPRSESPQAIVADMVAGLNHPELAHIEHNRFQAASYALQQAGAQDIILL 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|298369643|ref|ZP_06980960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282200|gb|EFI23688.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 492

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 142/445 (31%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I   + F A +G + DG  +I  A+  GA  V  + D          +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQGEYTDGRSYIPAAIANGAAFVFWDDDGKFEWNPEWEVPNQGIKDL 88

Query: 92  LGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGMLAAQVYGNVSDDLKVWGVTGTNGKTSITQWLAQAADLLGEKTTIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V     + T +   
Sbjct: 149 ALEETTHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSTIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D+   EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINVDDEYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      Q            +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRIVHFTASSDGMEAVFQTPWGEGRCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A++ L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALATLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDRGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRATAIRYAVERAASSDIILIAGKG 464


>gi|281412294|ref|YP_003346373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
 gi|281373397|gb|ADA66959.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga naphthophila
           RKU-10]
          Length = 490

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 90/485 (18%), Positives = 155/485 (31%), Gaps = 57/485 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   KG  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRKGEKFDSHEIIPEVIEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS------------------K 107
             VVV  ++      L  P   V D      K+A                          
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFDEPWKDVLTFGVTGTNGKTTTT 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I  +  S+G+  +     +        Y  I + +    +            F   E+
Sbjct: 119 VMIYHMLTSLGEKGSVLTTAVKRILENSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN 
Sbjct: 179 --SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN- 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E L    +        +FG SKNAD++L   +   E +   ++     + V    
Sbjct: 236 -----ESLADTFNRKS--RKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKA 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N    +  +  L  D      +L  F   EGR +  R A   G   ++D +++
Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +L  +    +GR I V G     G  S      +   ++      V L+
Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399

Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                G      +  L   + +                  +    GD VV+        Y
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458

Query: 459 RLINL 463
           ++I+ 
Sbjct: 459 QIIDE 463


>gi|255018114|ref|ZP_05290240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes FSL F2-515]
          Length = 242

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 21/220 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHQFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            I+ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKIVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             ++   +    +    IG+    IG  +   +        + E              + 
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQETFRDMLLSGVSTAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +S    ++   +     +AV   ++  HL     +EE A+
Sbjct: 176 VSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAN 215


>gi|120601786|ref|YP_966186.1| UDP-N-acetylmuramyl-tripeptide synthetases [Desulfovibrio vulgaris
           DP4]
 gi|120562015|gb|ABM27759.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 141/452 (31%), Gaps = 44/452 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR + P + F A+ G   DG  FI  AV +GA +VV   D +  +   +  V   D
Sbjct: 22  IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFAVAVHD 81

Query: 90  DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  L  A          ++ +TG+ GKTT   +L    +S  +    +G+ +   
Sbjct: 82  DPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTVSYRW 141

Query: 148 -----GVPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                  PLT        +           +  + +S     +     +R   AV+T + 
Sbjct: 142 PGHVETAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVLTNLT 201

Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSF 250
             HL     +E   +AKA +F    E +    +N DD +   L A          T    
Sbjct: 202 QDHLDYHGDMETYFNAKARLFRELPEVSKHCAVNADDPWGRRLLADLPGAVGFALTGAPV 261

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +++   ++ +         M  + +   ++    G         +  +G+   L+   
Sbjct: 262 SGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGLSPAD 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              ++  +    +  R    R       +    ++      +++                
Sbjct: 322 FVHLENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNVLRALRDVGFTR---------- 371

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
            + V G     G         L       +     L+  +         +  +K  L  +
Sbjct: 372 IVTVFG----CGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V                L  GD ++V  K 
Sbjct: 428 REVVAEADRRKAIALALEMLRPGDALLVAGKG 459


>gi|295702921|ref|YP_003595996.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
 gi|294800580|gb|ADF37646.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium DSM 319]
          Length = 469

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 98/459 (21%), Positives = 190/459 (41%), Gaps = 30/459 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDS--RSIAPQEAFF-----AIKGPHYDGHDFI 57
           +T +++L+   G          +   +I+   + I      F      I+G       + 
Sbjct: 4   FTLNEILKQTGGDLCYGSGNPVIKH-AINYAKKDIEDHTLIFHLDREPIRG------KYW 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                  + +V+ +   + +    +I +     +  A  K     R      +I +TG+ 
Sbjct: 57  KE---NHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTC 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   L    K  A   S N+       L  +    +  +FE+ +++ G ++ 
Sbjct: 114 GKTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                +P I ++  I   HL++    EE   AKAEI EGL+    I +   D   E +K 
Sbjct: 174 ACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADD--ENIKR 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 ++ +   GK+ ++ FQ +  K  ++     ++ Q    +    G G H   N L
Sbjct: 232 VLDVSHLQNVVYIGKNDSSQFQAKDIKYANKGMAFTLKYQNTEYDAFIPGYGEHNVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  V  +  D+  AI+ LS+F   E               T+I++++N++P SM  A+
Sbjct: 292 AAIAAVFYVGIDISVAIQRLSLFEQVEE---HLEFKRGMNECTVINDTWNSSPLSMATAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            VLS +S   +   IA+LG M ++GE   +   + D+ +  +   I  + + G    A+ 
Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGEEAKAIG 406

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +       V++ +T D ++  +   L +  ++++K
Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445


>gi|208778912|ref|ZP_03246258.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
 gi|208744712|gb|EDZ91010.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella novicida FTG]
          Length = 479

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 136/474 (28%), Gaps = 49/474 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKNINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +               + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKKYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    + +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +K          +  + +    F   +   GD++++  K 
Sbjct: 398 DNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|320535821|ref|ZP_08035902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
 gi|320147369|gb|EFW38904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema phagedenis
           F0421]
          Length = 564

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 140/478 (29%), Gaps = 57/478 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+ I  DSR +     FFA  G H DG  +I  A+  GA  +V   ++ +   +  +
Sbjct: 61  DTEVSSIEYDSRKVQAGAVFFAFPGLHTDGEQYIADAIHTGAIAIVHQNELPSY--AAGV 118

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V +V   ++               +I +TG+ GK++T   +   L    K      
Sbjct: 119 CYVRVREVRAVMSAFVAYFYDFPSKDLVVIGVTGTEGKSSTVSFIAQLLRLAHKRAGFFS 178

Query: 142 SYNNHIG---VPLTLARM---------------PVDVDFGIFELGMSHLGEIRFLTHLVR 183
           + +  +G   +P    +                    +F + E     L  +    + V 
Sbjct: 179 TVSYSLGDEVIPNPEHQTTPESVTVQQRLAAMRDNGCEFAVVESSSHGLSPLTARLNDVC 238

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL------KA 237
               +   +   HL      E+    KA +F  L++   I        F ++        
Sbjct: 239 FDAGIFMNVTQEHLEFHGTFEQYRFDKANLFRKLDEHAHIKAGRSVPSFGVVNADDPSAE 298

Query: 238 KSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +A   +  YSF           K++         K+ S     ++   GKS  +    
Sbjct: 299 YFYAATKQPCYSFSVNTAKKTAFLKNELQGVIAVNIKEDSNGIQFDIFESGKSESIHARA 358

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               +     +   ++++ +       + + +    E    R         F ++ + Y 
Sbjct: 359 PLAGLFNVQNLCASLLTVSSILQKPLAELIPLLQKLEPITGRMCKIQEGQPFEVLID-YA 417

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P+S +  +  +        G+ I V G     G    +        ++      + L+
Sbjct: 418 HTPSSFQMLMPPIKDRIAKQGGKLIVVFGS----GGERDTKKRPEQGRIAAAYCDVIILA 473

Query: 408 GFHVLA---------LKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          +    P       +              S     D V++  K 
Sbjct: 474 DEDPRGEDPVALLEMIAAGAPHKKLDSELFIIPDRKAAIRKAFSLANPHDAVLLLGKG 531


>gi|313156829|gb|EFR56269.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alistipes sp. HGB5]
          Length = 485

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 167/474 (35%), Gaps = 44/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL+     ++       V G+  DSR++ P + FFA++G   DGHDFI  AV K
Sbjct: 1   MKTLKELLRNTPVTALHGDDSAAVAGLVYDSRAVGPGDCFFAVRGTQNDGHDFIPAAVAK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  VV     +    +  +    V D  GAL  +A A          ++ ITG+ GKTT
Sbjct: 61  GAAAVVCER--LPEQTAADVVYVAVPDAAGALADMAAAFYDHPSRALKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T  +L   + ++      I +    +G                  + R   D       +
Sbjct: 119 TVTLLYDLVRALGHKAGLISTVVYKVGERTVGATHTTPDPVRLNAMMREMADEGCEYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++  T  +     + + I   HL       E   AK   F+ L K      N 
Sbjct: 179 ECSSHAIVQERTRGLHFAGGIFSNITHDHLDYHKTFAEYIRAKKLFFDSLSKEAFALTNA 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A     I+++     ADF+ +  +   +   + +  Q          
Sbjct: 239 DDKNGRVMVQNTAAA----IHTYSLRSMADFRCKIVEMHPDGMLLRIDGQEVW----VGL 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L   G   +L  D    ++A S+ HP  GR +  R A            Y 
Sbjct: 291 VGRFNAYNLLAVYGAAVLLGFDRGETLRAASMLHPVSGRFELVRSANGVTAVVD----YA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  I  + +I    +   +         G+  ++   ++A++   Y  + V+ S
Sbjct: 347 HTPDALENVIRTIEEIRTPAQKLIVVC----GCGGDRDRTKRPEMAQIAVRYADTAVFTS 402

Query: 408 G----FHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+       L                         GD+++V  K 
Sbjct: 403 DNPRHESPEAILDQMAAGLEPGARFLRIADRAEAIRTAVMLSQPGDILLVAGKG 456


>gi|332663140|ref|YP_004445928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331954|gb|AEE49055.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 490

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 144/475 (30%), Gaps = 47/475 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL+ ++   +       +N +  DSR   P + F A+KG   DGH FI   +Q G 
Sbjct: 8   TLTSLLRGLKPLQVLGSTDIAINEVIFDSRKAGPNKVFVAVKGVQVDGHQFIPQTLQAGI 67

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
             +VV T  +       + +  V +   AL  LA A         T++ +TG+ GKTTT 
Sbjct: 68  SALVVET--IPENVPDQVTIVQVANSAQALGFLASAFYEHPSHQLTLVGVTGTNGKTTTV 125

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIFELGM 169
            +L    S +      + +  N             P  +A        V+       + +
Sbjct: 126 TLLYDLFSGLGYKCGLLSTVENRIASQVIASTHTTPDAVAINALLAQMVEAGCEYAFMEV 185

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +     +    A+ T I   HL      +    AK   F+ L K     +N DD
Sbjct: 186 SSHAVDQGRIAGLDFKGAIFTNITHDHLDYHLTFDNYIRAKKSFFDQLSKRAFALVNIDD 245

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + A   +             + R     +  + + + +  +       G  
Sbjct: 246 KRGMVMTQNTAASVNRYSLR------QMAEFRARIIENSLTGLHLDIDNQDFYGRLIGEF 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                  +    ++          ++ L+     +    R+   ++Q         Y   
Sbjct: 300 NAYNLLAVYATAVLLE-----QDKVETLTQLSRLKAAEGRFDYVMDQKRQVTAIVDYAHT 354

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++  +  +  +          V       G             ++      V L+  
Sbjct: 355 PDALEKVLETIQALRKADAKVLTVV-----GCGGDRDRTKRPTMAKVACQYSDQVILTSD 409

Query: 410 H---------VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  ++  +P      V                   GDVV+V  K 
Sbjct: 410 NPRSEEPEAIIREMEAGVPAGSRRQVLSITDRKEAIRTACRLAQSGDVVLVAGKG 464


>gi|160893326|ref|ZP_02074113.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
 gi|156865018|gb|EDO58449.1| hypothetical protein CLOL250_00875 [Clostridium sp. L2-50]
          Length = 499

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 156/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +Q   I       +  I  DSR +  Q  FF I G ++DGH ++ + + KG
Sbjct: 1   MKARELLKGLQYSVICGDEDVEIKEIYNDSRKVGEQGLFFCIVGANFDGHAYVKNVIDKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +VV  D+    G   + +  VD    A+  ++         K T+I ITG+ GKTTT
Sbjct: 61  AVCLVVQKDVEPVPG---VLIVKVDSTRYAMGIVSSNFYGNPSSKLTVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             M+   L S       IG+     G  +T A         + +              + 
Sbjct: 118 TYMIREMLMSAGHKTGLIGTIEIIDGNNVTAANNTTPESMIVHKKLKDMVDNGLDSVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +      V     + + ++  H+        EE A  K+++        T+   
Sbjct: 178 VSSQGLMLDRVAGVDFDYGIFSNLSRDHIGPNEHKTFEEYAMWKSKL-------FTMCKI 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +             I ++G + + D++       ++   + +            
Sbjct: 231 GIFNADDPHVDTMTEHATCKIVTYGINGDYDYKANNHNLYNKDGHLGIGYHLSGKLDGDV 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      ++  +L     +   +      +           R         FT++ + Y
Sbjct: 291 LVNLPGNFSIYNSL-AAIAVADLMGVPFDKIQEILKTIKVKGRVELIPISDKFTIMID-Y 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S+ + +  L +  P        ++      G  S+    ++ EV        +  
Sbjct: 349 AHNAVSLMSILETLREYKPKR------LVSLFGCGGNRSKERRYEMGEVSGNMADLTIIT 402

Query: 407 SG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + + +   I+     Y E         +   +   GDV+V+  K 
Sbjct: 403 SDNPRFEEPQDIINDIKTGINKTTGKYVEIIDRKEAIRYAIMNAEPGDVIVLAGKG 458


>gi|256372029|ref|YP_003109853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008613|gb|ACU54180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 499

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 85/466 (18%), Positives = 155/466 (33%), Gaps = 48/466 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L   ++   I       V GI+ID R I   + F A+ G H DG DF   AV++GA
Sbjct: 30  TLDALGALVEHARIVGDRATSVTGIAIDHREIRAGDLFAAVPGRHVDGRDFAAEAVRRGA 89

Query: 66  GLVVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
             V+          ++ +P   V    +  A+ ++A        S  ++I +TG+ GKTT
Sbjct: 90  VAVLT----AGQPVAVGVPQLVVPRASLRTAVGRVAHRIFGDPSSAVSVIGVTGTNGKTT 145

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL-----TLARMPVDVDFGIFELGMSHLGEIR 176
           T  +++  L  + +    +G+  + +  P             D       + +S +    
Sbjct: 146 TVSVVSQLLERLGEGVGVLGTLWSRLTTPEAPELARRLAEFRDSGRRWVAMEVSSIAIAM 205

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   + V T ++  HL     +E+  +AKA +FE  E+T    +N DD +   L 
Sbjct: 206 ERIEGLHVRVGVFTNLSQDHLDFHGSMEDYFAAKARLFE-PERTAIGVINVDDPWGARLA 264

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A      +    S       D    +++                     +        N+
Sbjct: 265 ASVRVPVVPVSISAVTDIEIDAAGIRFR----------------RNGRWYRSRLVGEHNL 308

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L  VS+L            V    E    R +  L      ++D +++ +     AA
Sbjct: 309 RNILLAVSVLEQVGFDPDLLRGVLGEVESPRGRMQRILGPRGLVVVDYAHSPDAL---AA 365

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------ 410
           +   +++     GR + V G     G         L   ++        ++  +      
Sbjct: 366 VLRAARLLVGPRGRLLVVFGA----GGERDQAKRPLMGAVAEQLADVAIVTSDNPRSEDP 421

Query: 411 ---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +         V              + +  GDV+VV  K 
Sbjct: 422 AAIAAQIVAGWRDRRGVRVVLDRRAAIEEAVAMMAPGDVLVVAGKG 467


>gi|226320942|ref|ZP_03796490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
 gi|226233644|gb|EEH32377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi 29805]
          Length = 508

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          + G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     S  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDL--DFYSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +  +V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLCNMVKNEVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   +       K+     KS  ADF +    + ++ +  E   +G      
Sbjct: 244 GFGVINLDDFYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSQILNIDIQDIV-DKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|172040890|ref|YP_001800604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
 gi|171852194|emb|CAQ05170.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium urealyticum DSM 7109]
          Length = 533

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 84/513 (16%), Positives = 153/513 (29%), Gaps = 61/513 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L     G          V+  +I S  + P   F A+ G    G  F   A   GA
Sbjct: 18  TLRELAALTGGTVAATHQDVTVDSAAIGSADVQPGGLFCAVPGSRVHGATF---AADSGA 74

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             V+ + +    +    +P+  VDDV   +  +A A          II ITG+ GKTTT 
Sbjct: 75  AAVLTDAEGAEILADADLPLLVVDDVRRWMGPVAAAVYGHPSRDLRIIGITGTSGKTTTT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE--LGMS 170
            ++  AL +         +     G            P   A +    D G+    + +S
Sbjct: 135 YLIERALMAKHSVGIIGTTGTRINGEQIPTKLTTPEAPTMQALLAQMRDRGVTHVVMEVS 194

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +   +A  T ++  HL     +E+    KA++F   +  G         
Sbjct: 195 SHALALGRVTGIDFDVAGFTNLSQDHLDFHPTMEDYFETKAQLFLQAQAEGAELPAAVVC 254

Query: 231 FFELLKAK---SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +    +     A       + G +K +    +        +  +        E   + 
Sbjct: 255 VDDDWGQRLAGMIADSGLQALTVGTTKQSGADWQVTDVHVTPAGRQEITVATEGEEFSYD 314

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   + N+  +L  +S +T   +    A +     +  G+       Q F  ++D ++ 
Sbjct: 315 IGLVGSFNVANSLLAISCVTQLGEDPQAAAAAIADVQVPGRMQAVDAGQPFLAVVDYAHK 374

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +    +  LS   P   GR   VLG     G         +    +      V+++
Sbjct: 375 PGAVAA--VVRTLSDYLPSPTGRIGIVLGA----GGNRDHDKRPMMGEEAAKVADAVFVT 428

Query: 408 GFHV----------------LALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVV 448
             +                     +A   +    + +             +    GD +V
Sbjct: 429 DDNPRDEEPAPIRSMILDGVRKAAEAREANGEKVFYDDVPGRADAIRAAVAWARPGDAIV 488

Query: 449 V--KSSNSCG------------FYRLINLLLEE 467
           V  K  +  G               L   L + 
Sbjct: 489 VAGKG-HETGQEVRGEIHPFADLEELAAALEQR 520


>gi|46580913|ref|YP_011721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450333|gb|AAS96981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234604|gb|ADP87458.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           RCH1]
          Length = 486

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 140/452 (30%), Gaps = 44/452 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I  DSR + P + F A+ G   DG  FI  AV +GA +VV   D +  +   +  V   D
Sbjct: 22  IRTDSRRVGPGDVFVAVPGVAVDGAAFITQAVAQGATMVVCRADGLQHLPEAAFAVAVHD 81

Query: 90  DVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  L  A          ++ +TG+ GKTT   +L    +S  +    +G+ +   
Sbjct: 82  DPRAALGALGQARYGTASLPFPVVGVTGTNGKTTITYLLEHLFASAGRRCGVLGTVSYRW 141

Query: 148 G-----VPLTLARMPVDVDFG---------IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                  PLT        +           +  + +S     +     +R   AV+T + 
Sbjct: 142 PGHVEAAPLTTPDCLQLHEMLGQMAGAGVDVAFMEVSSHALDQERVAGIRFAGAVLTNLT 201

Query: 194 PAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSF 250
             HL     +E   +AKA +F    E      +N DD +   L A          T    
Sbjct: 202 QDHLDYHGDMETYFNAKARLFRELPEVGKHCAVNADDPWGRRLLADLPGAVGFALTGAPV 261

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +++   ++ +         M  + +   ++    G         +  +G+   L+   
Sbjct: 262 SGTRHLHGEMLRCSTAGVHLRMHFEGRTWEVDSPLVGAHNASNLLAVQAVGLGLGLSPAD 321

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              ++  +    +  R    R       +    ++      +++                
Sbjct: 322 FVHLENFTGVPGRLERITNDRGLDVFVDYAHTPDALVNVLRALRDVGFTR---------- 371

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRS 421
            + V G     G         L       +     L+  +         +  +K  L  +
Sbjct: 372 IVTVFG----CGGNRDRTKRPLMGAAVAAHADVAVLTSDNPRHEDPLAIMEDVKPGLAGA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V                L  GD ++V  K 
Sbjct: 428 REVVAEADRRKAIALALEMLRPGDALLVAGKG 459


>gi|162449931|ref|YP_001612298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161160513|emb|CAN91818.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 534

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 90/485 (18%), Positives = 147/485 (30%), Gaps = 52/485 (10%)

Query: 7   FHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             D+L+ I G ++         V G+ +DSR +   + F A  G    G  FI  AV +G
Sbjct: 20  LGDVLREIPGAALSPAGAEDMVVTGVHLDSRKVGQGDIFVARAGARAHGERFIPEAVARG 79

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+V     A    L      V DV    A     V         ++ ITG+ GKTTT
Sbjct: 80  ARAVIVARGSAADT--LGAARVEVPDVPLALAQAAAVVYGHPTFTLEVVGITGTNGKTTT 137

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   +         +G+     G                  +  A +       + E
Sbjct: 138 AHLVQACIDRCGGQAGIVGTLGYRFGDLDVHASHTSPEADELARVAAAMVARGATHLVME 197

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S +         VR  IAV T +   HL     +E  A+AKA +F      G   +N
Sbjct: 198 V--SSIALAAKRVDAVRFRIAVFTNLTQDHLDYHGTMEAYAAAKARLFV-DLGPGAAVIN 254

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------KQCSEQSWMEVQLQG 278
            DD F   L       G+    +   ++ +               +     S   ++ + 
Sbjct: 255 VDDPFGRQLVEMLAPGGLSRPTAATLARYSAEVGAGPDAAEIAPVELAHSASGTFIRART 314

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + EV              +   +        D    A ++  P +  G+  RC      
Sbjct: 315 PAGEVTIRSHLLGAHNASNLLAALAVAYLLGFDVGDAAAALSSPIQVAGRLERCDAPGAD 374

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++   Y   P ++     VL+ +   G GR + V G     G                
Sbjct: 375 DVIVLVDYAHTPDAL---ARVLASVRALGGGRVLCVFG----CGGDRDPLKRPQMGEAVG 427

Query: 399 YNISHVWLS-----GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  ++          A+ DA+          V                   GDVV+
Sbjct: 428 RVADVAIVTNDNPRSEDPRAIADAILPGLAAGRARVVVELDRARAIERAVLDAEPGDVVL 487

Query: 449 V--KS 451
           +  K 
Sbjct: 488 IAGKG 492


>gi|239636468|ref|ZP_04677470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
 gi|239597823|gb|EEQ80318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus warneri L37603]
          Length = 494

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F  + V +G
Sbjct: 1   MNASVLFEKIRVKQVIGTLDKEVVDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVVDQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             ++VVN +         +    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CSIIVVNREQDLKGE---VTQIIVPDTLRVASLLAHELFDFPSHQLVTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    +           +    +             +   +   + E      + 
Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDEGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +         
Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G   +A F+    ++  +    E      S +V    +
Sbjct: 238 LNNDDDFSEYLASVTPYEVFTYGIDHDAQFKAINVEESLQGVKFEFDTPFGSYQVESPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V    A  +  I+A+    P EGR +     L          + + 
Sbjct: 298 GKFNISNIMAAMIAVWSKGATFEDIIEAVKSLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     ++  + P  + + I ++G M   GE   +   ++  V    +  +V  + 
Sbjct: 358 -------MNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVA--CHADYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   E               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHSNYIEFEDRAEGIKHAIDVAEPGDTVVL-ASKG 458


>gi|238752427|ref|ZP_04613904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
 gi|238709360|gb|EEQ01601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia rohdei ATCC 43380]
          Length = 471

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 129/453 (28%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   VV   D VA   S      +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + ++   L+ LA     +  A +  +  +     T     +A  S              
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALSLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   +          +                  + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +    I    D      L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQAEHKIINADDAVGRRWLSQLPQAVAVSMEGNI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +   R+       + +         ++    +G     N+L+ L  +  L   
Sbjct: 242 PTGWQGPWLSTREVHYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + A     P  GR + +              + +A           L+    H +G
Sbjct: 302 LTQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRSLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                     + DVV++  K 
Sbjct: 411 AGRAQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443


>gi|167035508|ref|YP_001670739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida GB-1]
 gi|166861996|gb|ABZ00404.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida GB-1]
          Length = 496

 Score =  126 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 69/457 (15%), Positives = 142/457 (31%), Gaps = 37/457 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALTRGAAAVAYEEQGATVLPLTEV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +A            ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDVAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R+       +                + +S     +     +   IA
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLYDLKKQGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V+T ++  HL     +E    A AK   +  L        +          A+  ++   
Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPSLRCQVVNLDDAFGRRLAADFARRPSVDHI 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                  S          ++ +            +              N+   L  V+ 
Sbjct: 256 DTRLLSYSLENPDASLFCREAAFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAAVAT 315

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L A      + L V     G   R +         ++ +  +   A       VL  + P
Sbjct: 316 LLALDYALDEILKVTPQLHGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALRP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H  G+ + + G     G         L   ++      V ++  +            ++ 
Sbjct: 372 HAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQRIFDDIRP 427

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              R + V +          + +S    DV+V+  K 
Sbjct: 428 GFARPVSVEFVAGRGEAIAQLIASAAANDVIVLAGKG 464


>gi|328542961|ref|YP_004303070.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate
           ligase-like protein [polymorphum gilvum SL003B-26A1]
 gi|326412707|gb|ADZ69770.1| putative UDP-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase, putative-like protein
           [Polymorphum gilvum SL003B-26A1]
          Length = 489

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 86/470 (18%), Positives = 151/470 (32%), Gaps = 38/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L   +        P   V+G++ DSR + P   F A++G   DG  F+  A+++GA 
Sbjct: 3   LDSLAADLG--LPHPPPTLSVSGLTADSRQVRPGFLFAALQGTAVDGWRFVPRALEQGAV 60

Query: 67  LVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            V+ +    A++      S+PV    D   AL  +A     R   T++A+TG+ GKT+  
Sbjct: 61  AVLTDAQGAAALAGTMPDSVPVLVAQDARRALALMAARFYGRQPNTMVAVTGTSGKTSVA 120

Query: 124 EMLTIALSSIKK-------TYACIGSYNNHIGVPLT-----LARMPVDVDFGIFE--LGM 169
             +                          + G+         A +    D GI    L  
Sbjct: 121 HFVRQIFEHAGHASASLGTIGTVTSRGRAYGGLTTPDPVSLHAELARLADEGITHAALEA 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     VR      T +   H+   +  E+   AK  +F  L   G   +    
Sbjct: 181 SSHGLEQHRLDGVRLVAGAFTNLGRDHMDYHATEEDYLQAKLRLFRDLLPAGGSVVVDPG 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                            I++ G+ + AD +L   +       + V+      ++     G
Sbjct: 241 ERCADRVLAVARERGLHIFTVGE-RGADLRLTGLRHSGFSQELTVETPRGDYKISLPLAG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L+  G+           ++AL       GR +      N      +D ++  +
Sbjct: 300 RFQVSNALIAAGLAITAGEATGAVLRALEDLEGAPGRLELVGRKANGA-LVFVDYAHKPD 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                   + L+ + P   GR   V+G     G         L    +  +   V ++  
Sbjct: 359 ALE-----NALAALRPFTCGRLFVVIGA----GGDRDPGKRPLMGAAAARHADVVIVTDD 409

Query: 409 ----FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A++ A L  +                 + L  GDV+ V  K 
Sbjct: 410 NPRSEDPAAIRKAVLAGAPDALEIGDRGAAIAEAVARLEAGDVLCVAGKG 459


>gi|283783872|ref|YP_003363737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
 gi|282947326|emb|CBG86871.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Citrobacter rodentium ICC168]
          Length = 495

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+KG   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVTGLPARELREMTLDSRVAASGDLFVAVKGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSENMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G                 E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVTPTENTTGSAVDVQHELAGLVAQGATFG 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     ++    V T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLIQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHHYGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLTNLPDAVAVSMEDHINPNCHGRWLKAVAVDYHDSGATIRFTSSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTATRLQPVCGRMEVFSAPGKTTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCGGQLWCVFG----CGGDRDKGKRPLMGAIAEQYADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIIDDILAGMLDAGRARVMEGRAEAVTNAIMQAKENDVVLVAGKG 467


>gi|83648527|ref|YP_436962.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
 gi|83636570|gb|ABC32537.1| UDP-N-acetylmuramyl tripeptide synthase [Hahella chejuensis KCTC
           2396]
          Length = 508

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/474 (14%), Positives = 140/474 (29%), Gaps = 44/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+      +      +++ I  DSR +     F A +G   +G  ++  A+ +GA 
Sbjct: 9   LAELLK--GIAEVPAALDCWLSDIQQDSRKVTSGALFVAAEGVSSNGAQYVEDALARGAR 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKE 124
            V++            +    + +V   +  +A     +   +  ++ +TG+ GK++   
Sbjct: 67  AVLLPGTRQHVYEKGDVVFIELANVRPVVGIIAHRFFGQATHRMKVVGVTGTNGKSSVTH 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELG 168
            +      +  + A +G+     G P +L          +                  + 
Sbjct: 127 YVAQMAEGLGMSAAVVGTLG--YGRPDSLKATTHTTPDAVSLHRVLAELRDEGIELVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     V   +AV+T I   HL     +E  A AK  +F        +F   D
Sbjct: 185 VSSHALDQDRAAGVNFDVAVLTNITRDHLDYHGTLEAYAEAKKRLFLSDSVRWKVFNQDD 244

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +       +           AD         ++     + L           +
Sbjct: 245 PYGARWAQELQGPKTLTFSIGKQDQTAADVCAEDIHFDADGMSFALDLGATREPARLALV 304

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L     +S L  +     + L+   P  GR    R   ++    L+D ++  
Sbjct: 305 GEFNLSNALAACAAMSALKVEPQAVRQQLARLTPVAGR--MQRLHEDKAPTVLVDYAHTP 362

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +   +      L     H  GR   V G     G         L   ++      V L+ 
Sbjct: 363 DALEV-----ALKAARRHCPGRLWCVFG----CGGDRDPGKRPLMGAVAAQYADEVVLTD 413

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +     +  H       +    F        DV+++  K 
Sbjct: 414 DNPRGEDPESIVAQIVKGAEQGAHFQVVRPRNDAIRFAVEHAAQEDVILLAGKG 467


>gi|253988589|ref|YP_003039945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780039|emb|CAQ83200.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 495

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/478 (16%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               LL  +        P+  +  +++DSR  A  + F AIKG   DG  +I  A+ +G 
Sbjct: 5   NLRSLLAPLGI----DAPECALREMTLDSRKSAAGDLFVAIKGHQVDGRHYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+      A  G++     +PV  V D+   L++LA         +  +I +TG+ GK
Sbjct: 61  AAVIAEAQGEADSGTVQVIHGVPVVYVSDLNNKLSQLAGQFYHHPGGQLRLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G                 +            
Sbjct: 121 TTTTQLLAQWAHGLGEISAVMGTVGNGLLGHVAPSENTTGSAVDIQLDLQQLVQKGATFA 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +   +AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQGRVAALPFEVAVFTNLSRDHLDYHGDMEHYEAAKWLLFSSHNVKQQIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DD   + L     A+ +       ++    +    + K   +   +  +       + 
Sbjct: 241 ADDDVGQKWLSRLPQAVAVTMENRLPENWQGRWLSASEIKYHDKGVSVTFESSWGGGTID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   ++  S   P  GR + +              
Sbjct: 301 SPLMGAFNVSNLLLALSTLLALGYPLKKLLETASCLEPVCGRMEVFNAPDKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +GR   V G     G         L   ++     +V
Sbjct: 361 TPDA-------LEKALLAARLHCKGRLWCVFG----CGGDRDKGKRSLMGSVAEQWADYV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +            +                              DVV+V  K 
Sbjct: 410 ITTDDNPRSEEPQAIVDDILTGFIDPGRAIVIHGRVEAVTSAIMQAKQDDVVLVAGKG 467


>gi|257092213|ref|YP_003165854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044737|gb|ACV33925.1| UDP-N-acetylmuramyl-tripeptide synthetase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 502

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/451 (17%), Positives = 134/451 (29%), Gaps = 37/451 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-----TDMVASIGSLSI 83
           G++ DSR + P + F A  G   DG  +I  A+  GA  V        T   A   +  +
Sbjct: 29  GVTDDSRQVRPGDLFLAYPGDVADGRRYIAEAIANGAVAVFWEPAPAGTPDFAWNRTWQV 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY---- 137
               V  +      LA A   R     ++IA+TG+ GKT+  + +               
Sbjct: 89  ANLAVAGLRELCGPLANAIYGRPSERLSLIAVTGTNGKTSVSQWIAATHPRRCAVIGTLG 148

Query: 138 --ACIGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         P     M         D     L  S +G         R  +AV T
Sbjct: 149 AGMPGQLVETGFTTPAATTLMRYLASFAHDDAQACALEASSIGIAEGRLDGARVDVAVFT 208

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI--KTIY 248
            +   HL   + +   A AKA +     +      N DD F   L A S A  +   T  
Sbjct: 209 NLTRDHLDYHATMAAYAQAKARL-FAWPRLRLAVSNLDDPFGRELAALSTATKVIGYTQQ 267

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +    +    +    ++  +     +              G     N+   L + ++L  
Sbjct: 268 AGADDRQGTIRAENIEETIDGLRFRLCAPNGRA---LVESGLLGRYNVSNLLAVAAVLID 324

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
              T       F        R           +I + Y   P ++++A+  L  ++    
Sbjct: 325 AGLTPKAVAERFAQLSSPPGRLEKIGGHNEPLVIVD-YAHTPDALESALMALRPVANARG 383

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSI 422
              + + G     G         L   ++  +   V L+  +  +      L D L  + 
Sbjct: 384 AGLVVIFG----CGGDRDRGKRPLMAAVAARHADRVVLTSDNPRSENEHAILADILAGAP 439

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            +    DVV++  K 
Sbjct: 440 TALVIADRGEAIRRTLLAAHPADVVLIAGKG 470


>gi|268610553|ref|ZP_06144280.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 143/458 (31%), Gaps = 55/458 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  I+ D+R +A    F  +KG  +DGH      ++KGA  VV   D+      L  
Sbjct: 17  NIEITSITDDTRKVAEGCLFVCVKGGSFDGHTAAAEMLEKGAAAVVCEHDL-----GLGD 71

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                D+       +  A       K  +I +TG+ GKTT   ++   L         +G
Sbjct: 72  RQILTDNSRRLYGMMCSAWFGHPEKKLHMIGVTGTNGKTTITNVIKHILMKNGHKTGLVG 131

Query: 142 SYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  N IG  +                    +    ++ + E+  S  G ++         
Sbjct: 132 TIQNEIGDEIVHTENTTPMAYDLMALLDRMVKAGCEYVVMEV--SSFGLVQNRIGASWFD 189

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T +   HL     +E+   AK  +F+  +           +  +    + +     
Sbjct: 190 TAVFTNLTQDHLDYHKDMEDYYQAKKMLFDICD-------CALVNIDDEYGKRLYGEIGC 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              SF     AD+     K  S  S       GKS  V     G     N+   + +   
Sbjct: 243 EKQSFSVKGCADYTADGIKIKSTGSSFWFCKGGKSHLVKCRMPGAFNVSNITAAMAVCLR 302

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               VD  I A+  ++  +GR            FT+I +  +   A      ++L  +  
Sbjct: 303 AGLSVDDIIAAVEEYNGVKGR---CEVIPTGRDFTVICDYAHTPDA----LENILRSVRE 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKD 416
           + + R I + G     G    +         +      + ++  +         +  +  
Sbjct: 356 YTDNRLICLFG----CGGNRDAAKRPKMAAAAAKFADRLIVTSDNPRNEDPELIIKEILT 411

Query: 417 ALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L  S I                     GD++V+  K 
Sbjct: 412 GLEDSDIPYDVVVDRREAIYHALKIAEKGDIIVLAGKG 449


>gi|242373173|ref|ZP_04818747.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
 gi|242349124|gb|EES40725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus epidermidis M23864:W1]
          Length = 494

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDINVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CRIVVVNRELE---LEGDVTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    +           +                  +   +   + E      L 
Sbjct: 118 ATMIHLIYRKLNKSSAYLGTNGFQINEKKTKGANTTPETVSLTKKIKEAVDEGAEAMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++++G    A F  +   +  +    ++        V    +
Sbjct: 238 LNNDDDFSGYLANVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYHVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V    A ++  I A++   P EGR       L+      +   Y  
Sbjct: 298 GRFNISNIMAAIIAVWSKGATMEEIINAVTSLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDMTKTPEMGSVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAIDVAEPGDTVVL-ASKG 458


>gi|307132588|ref|YP_003884604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
 gi|306530117|gb|ADN00048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Dickeya dadantii 3937]
          Length = 494

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 149/472 (31%), Gaps = 42/472 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVTDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             D     G+L     +PV  ++++   L+ LA     +      +I +TG+ GKTTT +
Sbjct: 66  QADEATPDGTLTEMHGVPVIYLENLNQRLSALAGRFYRQPSASLQLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170
           +L     ++ K +       N  +G                               + +S
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    AV T ++  HL     +    +AK  +F   +    I    D+ 
Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMTNYEAAKWRLFAEHQVGQKIINADDEV 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+    A+ +         +    +            ++      + E+    +G 
Sbjct: 246 GRRWLQRLPDAVAVSVAGEIDAGRAHWLKATHIDYHDSGFTVQFDSSWGAGEINSRLMGA 305

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L  +  L   ++  +K  S   P  GR + +  +           + +A  
Sbjct: 306 FNVSNLLLALATLLSLGYSLEQLVKTGSALQPVCGRMEVFLASGRPTVVVDYAHTPDA-- 363

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L+    H  G    V G     G         L   ++      V ++  +
Sbjct: 364 -----LEKALAAARLHCRGVLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L  +  V                    DVV+V  K 
Sbjct: 415 PRSEDPQAIVADILSGLLDAGRVQAIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|253580142|ref|ZP_04857409.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848661|gb|EES76624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 491

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 148/472 (31%), Gaps = 49/472 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ ++   +       V  +  DSR +     F  I+G   DGH F+   V KGA +++
Sbjct: 12  LLEKLEYTCLQGSTDQEVKNVVYDSRKVEEGSLFICIRGAVVDGHKFVPDVVAKGAKVLI 71

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLT 127
           V   + A      + V  V D   A+  ++ A       K   I ITG+ GKTTT  M+ 
Sbjct: 72  VEEAVEA---PEDVTVILVKDTRYAMAFISAAYFGYPAEKLKTIGITGTKGKTTTTYMVK 128

Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
             L +       IG+    IG                            D  + E+  S 
Sbjct: 129 SILENAGYKVGLIGTIEAIIGDKVIPAKNTTPESYVIQEYFHEMAEAGCDCVVMEV--SS 186

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            G +   T        + T I P H+              +                 + 
Sbjct: 187 QGLMLHRTQGFVFDFGIFTNIEPDHIGP-----NEHKDFDDYLRCKSLLLKQCKVGIVNR 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +    K       ++ ++G S  AD +    K    + ++ +    K +   H  I   
Sbjct: 242 DDEHFEKIIEGHTCSLETYGFSPEADLRAEDAKLVGGKGYLGISYHLKGLLDFHVEIDIP 301

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              ++  +L  ++I      +    L           R         FTL+ + Y  N  
Sbjct: 302 GKFSIYNSLTAIAICRHFKVSEENILKALK-VAKVKGRIEMVKVSDDFTLMID-YAHNAM 359

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
           ++++ ++ L +  PH       ++      G  S+    ++ EV        +  S    
Sbjct: 360 ALESLLTTLKEYHPHR------LVCLFGCGGNRSKLRRYEMGEVSGKLADLTIITSDNPR 413

Query: 408 GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A+ D +          +V           +       GD++V+  K 
Sbjct: 414 DEEPQAIIDDIKIGMAKTDGKYVEI-PDRKEAIAYAIHHGEPGDIIVLAGKG 464


>gi|300722054|ref|YP_003711334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628551|emb|CBJ89123.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Xenorhabdus nematophila ATCC 19061]
          Length = 495

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL          +P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----ALWGIDIPELPLREMTLDSRKAAAGDLFVAVQGHQTDGRKYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+      A  G++     +PV  +DD+   L+KLA          +  +  +     
Sbjct: 61  AAVIAEAKGKAGHGTIQKVHGVPVIYLDDLNNKLSKLAGEFYQHPGNKLKLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+   +          +                 
Sbjct: 121 TTTTQLLAQWSQGFGETSAVMGTVGNGLLGMVVPSENTTGSAVDIQLDLQQLVNQKATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     +     V T ++  HL     ++   +AK  +F   +    I  
Sbjct: 181 AMEVSSHGLIQGRVAALPFQAVVFTNLSRDHLDYHGDMDHYENAKWMLFSNHDVKQKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVV 284
             D    + L     A+ +       ++    + L        + + +       S  + 
Sbjct: 241 ADDAVGQKWLSRLPEAVAVTMENCLPENWQGRWLLANEVHYHDKGASIAFTSCWGSGTLN 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   ++  +   S   P  GR + +              
Sbjct: 301 SPLMGAFNVSNLLLALATLLSLEYPLEKLLATASCLEPVCGRMEVFAAEGRPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           LS    H +G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALSAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGVAELGADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +                            + DV++V  K 
Sbjct: 410 IVTDDNPRSEEPHSIVADILKGFVDPGRAMTIHGRVEAVTSAVMQATEDDVILVAGKG 467


>gi|15829343|ref|NP_308116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168751405|ref|ZP_02776427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|168755693|ref|ZP_02780700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|168764036|ref|ZP_02789043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|168771309|ref|ZP_02796316.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776929|ref|ZP_02801936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|168781970|ref|ZP_02806977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|168789612|ref|ZP_02814619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|168801512|ref|ZP_02826519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|195939301|ref|ZP_03084683.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208809395|ref|ZP_03251732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208814085|ref|ZP_03255414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821065|ref|ZP_03261385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398185|ref|YP_002268693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|217326553|ref|ZP_03442637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254791222|ref|YP_003076059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261226842|ref|ZP_05941123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255246|ref|ZP_05947779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|21362683|sp|Q8X9Z2|MURE_ECO57 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13359545|dbj|BAB33512.1| meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           Sakai]
 gi|187767763|gb|EDU31607.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4196]
 gi|188014523|gb|EDU52645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4113]
 gi|189000402|gb|EDU69388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4076]
 gi|189357056|gb|EDU75475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4401]
 gi|189359898|gb|EDU78317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4486]
 gi|189365881|gb|EDU84297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4501]
 gi|189370798|gb|EDU89214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC869]
 gi|189376347|gb|EDU94763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC508]
 gi|208729196|gb|EDZ78797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4206]
 gi|208735362|gb|EDZ84049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741188|gb|EDZ88870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4042]
 gi|209159585|gb|ACI37018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC4115]
 gi|209746594|gb|ACI71604.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746596|gb|ACI71605.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746598|gb|ACI71606.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|209746602|gb|ACI71608.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|217322774|gb|EEC31198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. TW14588]
 gi|254590622|gb|ACT69983.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-di aminopimelate
           ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190392|gb|EFW65042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. EC1212]
 gi|320642124|gb|EFX11475.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. G5101]
 gi|320647487|gb|EFX16282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. 493-89]
 gi|320652821|gb|EFX21059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H- str. H 2687]
 gi|320668831|gb|EFX35626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 str. LSU-61]
 gi|326345195|gb|EGD68938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1125]
 gi|326346951|gb|EGD70685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli O157:H7 str. 1044]
          Length = 495

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|291301483|ref|YP_003512761.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570703|gb|ADD43668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 495

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 151/473 (31%), Gaps = 49/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + +         +  V G+S+ S  + P + + A+ G    G +F+  AV++GA 
Sbjct: 15  LAALARLLSVPVDAEPGRVEVTGVSLASARVRPGDLYVAVPGARRHGAEFLAEAVERGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ ++  V +     +P     D   A   ++ A       + ++I ITG+ GKT+T  
Sbjct: 75  AVLSDSWGVEAAVEHGLPALHHPDPRAAAGVVSSAVYGEPTKRLSVIGITGTSGKTSTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFELG 168
           ++   L +  +    IG+    IG                       +   V   + E+ 
Sbjct: 135 LVEAGLKAAGRVTGLIGTVETRIGAETIVSERTTPEATELQALFAYALEQGVTDIVMEV- 193

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH   +     +    +   T     HL     ++E  +AKA++F+G  +   +  +  
Sbjct: 194 SSHALTLHRAEGIS-FAVGGFTMFGLDHLDFHPTVDEYFAAKAKLFDGRCRVEVVNAD-- 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +    +       T      +              +   +          V     
Sbjct: 251 ----DAWAKRLVTPDTVTYSLVDANATWSVDSITGSGFDQSFEVTSPHGRHHGSVRLP-- 304

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+  G ++ +   V+TAI  ++      GR       +++         Y  
Sbjct: 305 GRHNIANALLAYGCLTAVGVPVETAIAGVADCAGVPGRM----ELVSEDNPVHGVVDYAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P ++ A +     + P   G  IAV+G     G         L    +      V ++ 
Sbjct: 361 KPDAITAVLEA---LRPITSGSLIAVIGA----GGDRDPSKRTLMGDAAARAADLVIVTD 413

Query: 409 -----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV-VV-KS 451
                    A++  +   +                   +    GD + ++ K 
Sbjct: 414 DNPRTEDPAAVRAGVLAGVGDRPHLEVADRATAIDEAVARAKPGDTIALLGKG 466


>gi|219684659|ref|ZP_03539602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
 gi|219672021|gb|EED29075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           garinii PBr]
          Length = 508

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 88/481 (18%), Positives = 158/481 (32%), Gaps = 57/481 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ I+G          ++G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKHIKGSL-----DLEISGVTYSSKLVLPRFVFFALPGIHFDGHDFIETAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + DM     S ++    VD  ++   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDM--DFYSPNVTYIKVDNFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGI 164
             + + L         I +     G    +                         V + I
Sbjct: 127 YYIYLLLKKKGIKVGFISTVFLDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   +AK  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +F +   A       K+     KS  ADF +    +  + +  E   +G      
Sbjct: 244 GFGVINFDDPYYADFKNAVKKSFTYSLKSNKADFFVSFIDEKIDSTRFEFYHKGVKYSAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            L             +  +   +   +    + +            S    GD+VVV  K
Sbjct: 414 ILCDEDPRGENGMCIIKDIAKGIVNKVINQDLFFIPDRKLAIEKAISLARAGDLVVVLGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|269967390|ref|ZP_06181450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
 gi|269827978|gb|EEZ82252.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio alginolyticus 40B]
          Length = 493

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/459 (16%), Positives = 150/459 (32%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR + P   F A+ G   DG  FI  A+++GA   +     V + G++  
Sbjct: 22  SVLVSELELDSRRVQPGTTFVAVIGYVVDGRKFIASAIEQGANAALAQACDVKTHGTVEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+ +A          +I +TG+ GKTT  +++   L  +    A 
Sbjct: 82  IDDVPVIYIDRLDQRLSAIAGKIYAYPDMDLIGVTGTNGKTTITQLIAQWLELLDHKAAV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
           +G+  N  G    L +        +                  L +S  G  +     + 
Sbjct: 142 MGTTGN--GFLNNLQQAANTTGNAVEIQKTLSSLANQQATYTALEVSSHGLTQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +    I    D+   +   A   +  
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLGLFTQHQCERAIINVDDEVGHQW--ASQLSNA 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I           +     +         ++   +  S ++    IG   A N+++    +
Sbjct: 258 IAVSLKANTEFESAIWATEVSYAESGITIKFDGKFGSGKLHAPLIGEFNATNLMLAFATL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L  +    ++      P  GR + ++             + +A           L  +
Sbjct: 318 LSLGKEKQALLETAGQLQPVLGRMELFQTEDRAKVVVDYAHTPDA-------LEKALQAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LAL 414
             H EG+  A+ G     G    +    +   ++      V L+  +            +
Sbjct: 371 RVHCEGQLWAIFG----CGGDRDAGKRPMMAEIAERLGDRVVLTDDNPRSEDPVQIVKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +   +    D++++  K 
Sbjct: 427 LAGLSKPAEAIVQHDRFKALSYAIENASPNDIILLAGKG 465


>gi|322834425|ref|YP_004214452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
 gi|321169626|gb|ADW75325.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rahnella sp. Y9602]
          Length = 495

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/478 (14%), Positives = 136/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              D+L       +   P   +  + +DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDIL----APWVSDAPAVALKDMILDSRVAAAGDLFVAVSGHTSDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV         G++     +PV  ++D+   L++LA     +    +  +  +     
Sbjct: 61  AAVVAEAKGEQQHGTVCQMHGVPVVYLEDLNILLSELAGRFYQQPGKELRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+   +          +                 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLDNVIPAENTTGSAVQVQHILADLVKLGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     ++    AK ++F   +    I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMQSYEDAKWQLFASHQVGQKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L    +A+ +          +  +   R        + + +       ++ 
Sbjct: 241 ADDEVGARWLAKTPNAIAVSMEDKIPAGWSGRWLVARSVNYHDNGATVNIDSSWGEGKLE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +   S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLAQLLATASQLQPVCGRMEVFNAPGKPTAVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L+    H  G    V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALAAARLHCRGTLWCVFG----CGGDRDKGKRPLMGAIAEQYADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +  V                  + DVV++  K 
Sbjct: 410 IVTDDNPRSEEPRAIVADILAGLLDAGRVQEIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|260773499|ref|ZP_05882415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
 gi|260612638|gb|EEX37841.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio metschnikovii CIP 69.14]
          Length = 495

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 138/457 (30%), Gaps = 40/457 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  + +DSR I P + F A+ G   DG  FI  A+ +GA LV+   D     G++S
Sbjct: 23  NSLTIQHLQLDSRKIQPGDTFVAVAGHAVDGRQFIADALARGANLVLAQADEQRPHGTVS 82

Query: 83  ----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------S 132
                P+  +  +   L+ LA          +IA+TG+ GKTT  +++T  L       +
Sbjct: 83  DIDSKPIIYLASLDEHLSALAGRFYADHTNRVIAVTGTNGKTTISQLITQWLELMGERAA 142

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRP 184
           +  T            +  T   + V                + +S  G ++     +  
Sbjct: 143 VMGTTGNGFLNQLQPALNTTGNALEVQATLRQLAEQGARYTAMEVSSHGLVQGRIKALPF 202

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V + ++  HL     ++E A AK  +F   +    I    DD              +
Sbjct: 203 IAGVFSNLSRDHLDYHGTMQEYAKAKQSLFTEHDCQQAILNV-DDPVGAQWATHQWPRLV 261

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                                  +   +          +    IG   A N+L++L  + 
Sbjct: 262 GVSLYQQPETERCLWATSVSYSEQGIHLAFDGSWGVGHLHVALIGEFNASNLLLSLATLL 321

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L       +   +   P  GR + +              + +A           L  + 
Sbjct: 322 SLGFSKPALLDTAAQLTPVLGRMELFSVPGKAKVVVDYAHTPDA-------LEKALCALR 374

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKD--- 416
            H  G+   + G     G    +    +   ++      +  +  +       A+     
Sbjct: 375 VHCLGQLWVIFG----CGGDRDTGKRPMMAAIAEQFADKIIFTDDNPRSESAHAIVQDML 430

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A       H          +  +     D++++  K 
Sbjct: 431 AGLSHRQAHVEHNRYQALQYALAHANADDIILLAGKG 467


>gi|37527523|ref|NP_930867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|46576914|sp|Q7N142|MURE_PHOLL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|36786958|emb|CAE16032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 495

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 140/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL  +        P   +  +++DSR  +  + F AIKG   DG  +I  A+ +G 
Sbjct: 5   NLRDLLAPLGI----DAPVRELREMTLDSRKSSAGDLFVAIKGHQTDGRHYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+         G++     +PV  V+D+   L++LA          +  I  +     
Sbjct: 61  AAVIAEAQGEVDNGTVQIMHGVPVVYVNDLNNKLSQLAGEFYCHPGDKLHLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+   +A         +                 
Sbjct: 121 TTTTQLLAQWSHGLGETSAVMGTVGNGLLGRVAPSENTTGSAVDIQLDLQQLVRQEATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQGRVAALPFEAAVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHNVKQQIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+   + L     A+ +       ++    +   R+ K   +   +  +       + 
Sbjct: 241 ADDEIGLKWLSRLPQAVAVTMENRLPENWQGRWLAAREIKYHDKGVSITFESSWGGGTID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   ++  ++  S   P  GR + +              
Sbjct: 301 SSLMGAFNVSNLLLALSTLLALDYPLEKLLETASCLEPVCGRMEVFTTPGKPVVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +G+   V G     G         L   ++     +V
Sbjct: 361 TPDA-------LEKALMAARLHCQGKLWCVFG----CGGDRDKGKRPLMGGVAEQLADYV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +                              DVV++  K 
Sbjct: 410 IVTDDNPRNEEPQAIIADILTGFLDPGRAIAIHGRVEAVTNAIMQAKADDVVLIAGKG 467


>gi|256821909|ref|YP_003145872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
 gi|256795448|gb|ACV26104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kangiella koreensis DSM
           16069]
          Length = 533

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/506 (14%), Positives = 152/506 (30%), Gaps = 72/506 (14%)

Query: 7   FHDLLQ-AIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
              +++  +        PQ     V+GI +DSR I P + F A  G   DG  +I  AV 
Sbjct: 11  LKKIIKPLVNEQFWKDNPQAAMTEVSGIQLDSRQIKPGQLFVAYPGHATDGRQYIKQAVD 70

Query: 63  KGAGLVVVNTDMVASIGS---------------------------LSIPVFGVDDVLGAL 95
            GA +V+   +   +I                                 +  V ++   +
Sbjct: 71  GGATVVLFEQNDSETILETLLNDNQQVAASAQTLSGVAPLGLYNYKEAVLIPVKNLSSQV 130

Query: 96  NKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           + +A         K +++ +TG+ GKT+   ++  AL  ++     + +  N     L  
Sbjct: 131 SHIAARFYGNPTNKMSVVGVTGTNGKTSCAYLMAQALEFLQYPTLMLSTIGNGNPSKLQA 190

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLV--------------RPHIAVITTIAPAHLSN 199
                     I  L   +L    +   +               +  IAV T ++  HL  
Sbjct: 191 TENTTPDAIAIQRLAAEYLARKNYHMTMEVSSHGLVQSRVAAVQYKIAVFTNLSQDHLDY 250

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
            S +E    AK ++F   E    +    D+    LL     A+  + I    + KN D  
Sbjct: 251 HSDMESYFQAKRQLFIREELEAAVINADDEYGRRLLTD--DAVACRKIAFSCEQKNEDLN 308

Query: 260 LRKWKQCSEQSWMEVQL----QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +  W      ++    +                         +     S+     D    
Sbjct: 309 IENWIVAKNLTFNMRGIQAELHTPWGASKLRSGLLGHFNLSNLLAVAASLGEMFGDIDKW 368

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +++   K   G+      +     ++D ++  +          L+ +  H  G    + 
Sbjct: 369 IVALNAAKAVPGRMQNFTASSKATVVVDYAHTPDA-----LDKTLTSLREHCAGELWCIF 423

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIH---VHYS 427
           G     G    +    L   ++    + V ++  +        +   +   +      Y 
Sbjct: 424 G----CGGDRDNTKRPLMGAVAEQKANRVIITDDNPRTESSEEIVSMIRSGMKDQSTQYI 479

Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451
           +       F        D+++V  K 
Sbjct: 480 QKRKEAIEFALKHSTPNDIILVAGKG 505


>gi|225426438|ref|XP_002270348.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 769

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/430 (17%), Positives = 147/430 (34%), Gaps = 35/430 (8%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  +LL   +   +      +  + GI  DSR ++  + F    G   DGH ++  A +
Sbjct: 241 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADK 300

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA  VV + ++          +  V+D    L  LA A          +I I G+ GKT
Sbjct: 301 RGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGKT 360

Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVPL-------TLARMPVDVDFG 163
           TT  ++     ++                          P            +    +  
Sbjct: 361 TTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAV 420

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S  G      + V   IAV T +   H+      E+  +AKA++F  +      
Sbjct: 421 VME--ASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRH 478

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               +          +       + +F  ++K+AD    K++    ++ + VQ     +E
Sbjct: 479 RKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILE 538

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G H   N+L  + +   + A ++  ++ +       GR +       Q F  ++
Sbjct: 539 ISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELID--EEQAFGVIV 596

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +  S      +L  +   G  R I V G   E    S      +   ++     
Sbjct: 597 DYAHTPDALS-----RLLDSVRELGARRIITVFGCAGE----SDRGKRPIMTKIATDKSD 647

Query: 403 HVWLSGFHVL 412
            V L+  +  
Sbjct: 648 VVILTSDNPK 657


>gi|144897230|emb|CAM74094.1| UDP-N-acetylmuramyl pentapeptide synthase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 304

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 119/303 (39%), Positives = 168/303 (55%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +FELGM+H GE+  LT +VRPH+AVITTI   H + F+  E+IA AKAEIF G+E  GT+
Sbjct: 1   MFELGMNHAGELIPLTKMVRPHVAVITTIEAVHSAFFATTEDIADAKAEIFLGVEAGGTV 60

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D+  F  L A + A GI    SFG   +AD ++       + + +   L+  ++  
Sbjct: 61  ILPRDNRHFRRLAAAAKAAGISHRQSFGSHIDADARMLDCAVDPDDTAVFALLRDHALAF 120

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L  V  L  D + A ++L+   P +GRG+R+  A   G   +ID
Sbjct: 121 RVGVPGLHWGMNALAVLLAVGALGGDAEKASQSLAAMRPPKGRGERHVVAWKGGSIEVID 180

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ESYNA+P SMKAAI+ L+   P   GRRIAVLGDM E+G+ + + H  LAE  +L+N   
Sbjct: 181 ESYNASPVSMKAAIATLAAARPGKGGRRIAVLGDMLELGDSAPALHAHLAEAAALWNTDL 240

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           V  +G  +  L  ALP +    ++     L   I++ +  GDVVVVK S      +++  
Sbjct: 241 VCTAGPLMAHLHQALPATRRGIHAANSTELAGLIKTVIKPGDVVVVKGSAGSRMAQVVKA 300

Query: 464 LLE 466
           LLE
Sbjct: 301 LLE 303


>gi|284030815|ref|YP_003380746.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
 gi|283810108|gb|ADB31947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kribbella flavida DSM
           17836]
          Length = 532

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 143/474 (30%), Gaps = 45/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL +           +  V G+S+DSRSI P + + A+ G    G  F+  A   GA 
Sbjct: 47  LADLARTAGAPVPAGAAEVLVTGVSLDSRSIRPGDLYAALPGAATHGAAFVAGAQASGAV 106

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +   V    +  +P+  V D    L  +A            ++ ITG+ GKTTT  
Sbjct: 107 AVLTDPAGVERALTAGLPLLVVPDPRAVLGDVAATVYGEPTKDLQLLGITGTNGKTTTSF 166

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           +L   L  +                 +  A    +                    + +S 
Sbjct: 167 LLDAVLRRLGPAALVGTIETRIGDQVVKSAMTTPEATDLQALFAVMREQGVAWCAMEVSS 226

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +      R  +A  T ++  HL      E+  +AKA +F   E+     +N DD +
Sbjct: 227 HALAKGRVDGARYSVAGFTNLSQDHLDFHKTFEQYFAAKASLFT-PERCDLAVVNIDDKY 285

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L A++    +    +              +     + ++++  G+++ V     G  
Sbjct: 286 GRRLAAQTVVPLVTVSTTRDADW---TVAGTHQSEHGGTVIDIRGPGEALTVEIVLPGDF 342

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L+ + ++  +    D     L             R         ++D ++  +  
Sbjct: 343 NVANALLAVAMLRQVDVPADEIAAGLRTARVPGRMETFLRPDG---LAVIVDFAHTPDAV 399

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
            +      L       +GR  AV+G     G              +      V ++    
Sbjct: 400 EL-----ALRAARGATKGRLYAVVG----CGGDRDPGKRPAMGAAAARAADTVIVTDDNP 450

Query: 408 -GFHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            G     +         A    + +                   GD VVV  K 
Sbjct: 451 RGEDPATIRAAAVEGARAAVPDVELREVGDRRAAIRTAIELAGPGDTVVVLGKG 504


>gi|253582903|ref|ZP_04860121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
 gi|251835109|gb|EES63652.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Fusobacterium varium ATCC 27725]
          Length = 483

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 147/454 (32%), Gaps = 46/454 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +    GI  DSR I     F A++G   DGH++I  AV+ GA  ++V+  + A      +
Sbjct: 19  EEEYTGIEYDSRKIKTGNIFVALEGAVSDGHNYIEQAVKNGAKCILVSKKIEAVFP---V 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               + D+   L  LA       +  +  I  +     T     I         A IG+ 
Sbjct: 76  KYIWIKDLRRKLGVLASNFYNWPQKKLKIIGITGTNGKTTTTYLIESILGSDKTARIGTV 135

Query: 144 NNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
              IG                V +    +   +++ + E+  SH   +  +  ++   ++
Sbjct: 136 EYKIGDEIIEAPNTTPESLDIVKMCKKSVEKGMEYLVMEV-SSHALALGRV-DMLEFDVS 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T +   HL     +E+   AK ++F  ++K        +                   
Sbjct: 194 MFTNLTLDHLDFHKTMEDYFQAKRKLFTMMKKGCEKNCVINIDDLYG----KRLSSEFGG 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S+G       + +  +   +   +E+ +   S ++    +G +   N+L  L I  +L 
Sbjct: 250 ISYGMHNEGRVRGKILEFHGDGQEVEINIDNFSTKIKLAILGRYNVYNVLGALSIALLLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            + D  +  +       GR +   C  +         +         A  ++L  I+   
Sbjct: 310 IERDIILDKIKELKGAPGRYELVNCGQDFTVIVDYSHT-------GDALENILKSINELK 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI 422
           +G+ I V G     G         +   ++        ++  +        + + +   +
Sbjct: 363 KGKIITVFG----CGGDRDPNKRSVMGEIAERLSDIAIVTSDNPRTEDPHKIVEQVLEGM 418

Query: 423 HVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   E  D             D++++  K 
Sbjct: 419 KGKNHIVEEDRDIAISKAVKLAEAKDIILIAGKG 452


>gi|331004322|ref|ZP_08327797.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411388|gb|EGG90803.1| hypothetical protein HMPREF0491_02659 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/464 (14%), Positives = 136/464 (29%), Gaps = 37/464 (7%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            + +    I    Q   + +  ++++I     F  IKG  +D HD I   V++GA  VVV
Sbjct: 7   AEGLDIEIISGELQDEFSELVFNTKNIVKDCLFVCIKGAKFDAHDAIDEIVKQGAKAVVV 66

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128
             D+        I V  V D   AL +L+ A       K  II ITG+ GKTT+  ML  
Sbjct: 67  QKDIKRD----DICVIKVSDTRVALARLSAAYFSHPAKKMKIIGITGTKGKTTSSYMLQK 122

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR---------------MPVDVDFGIFELGMSHLG 173
            L    K      +         +                  +  + ++ + E+  S   
Sbjct: 123 LLGQNAKVGLIGTNGITIGDTHRSTLNTTPESYELHKTFKECLDANCEYVVMEV--SSQA 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            +      +   I + T I+  H+      ++            ++     +N +D    
Sbjct: 181 VMLKRIEGICFDIGIFTNISHDHIGP-DEHKDFDEYLMYKSLFFKQCKNTIVNIEDEHAN 239

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +   S +    T    G     + +    K            +  + +   +     + 
Sbjct: 240 YVLKTSDSKQKYTFGKGGDFDIKNIEYISNKDFLGTRIDIKCREEIAEKYSVNNEISDIY 299

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNANPAS 352
             +     + + L+A     I  +     K            +  +T            +
Sbjct: 300 VGIPGEFNVYNALSALSAAIICGVKEADLKNALKDSRVNGRMEVAYTSHDFNVVIDYAHN 359

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-- 410
             +  S++  +  +   R + V G     G  S+     + E+        +  +     
Sbjct: 360 AISTESLIHTLRNYKPKRLVIVFGS---GGNRSKDRRYSMGEICGKMADFSIVTADNSRF 416

Query: 411 -------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                     ++   P                +   +   GD++
Sbjct: 417 EKTEDIIADIIEKLKPTGGEYITIPDRKEAIFYSIENAKKGDLI 460


>gi|319649668|ref|ZP_08003824.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
 gi|317398830|gb|EFV79512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Bacillus sp. 2_A_57_CT2]
          Length = 486

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 154/474 (32%), Gaps = 46/474 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+ +Q +         +  I  D+R + P   F  I+G   DGHDF   A +K   
Sbjct: 3   LHKLLRFLQPYMTFKGENPEITAIVNDNRKVTPGSLFVCIEGYTVDGHDFAASAAKK--- 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
                  +      L IPV  V +   A+  LA A   +      +I ITG+ GKTTT  
Sbjct: 60  --GAAAVIAQRELDLDIPVIVVKNTKRAMAVLADAFYGQPSKQLHLIGITGTNGKTTTSH 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           ++   L+   +    IG+    I                            VD  + E+ 
Sbjct: 118 LIEKILADAGRKTGLIGTMYTKIADETFEVKNTTPESLTLQSTFKKMADAGVDSAVMEV- 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
            S         H    +IAV T +   HL     ++E   A        G          
Sbjct: 177 -SSHALDEGRIHGCDFNIAVFTNLTQDHLDYHKTMDEYRRAKGLLFAQLGSSYNHEEPKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A+        + S+G  + AD +    +  S  +  ++       +V   
Sbjct: 236 AILNSDDPASAEYEKSTAAHVISYGIDQEADLRAINIQMTSGGTEFDLISPFGKHKVSLK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L ++G        +   IK+        GR +      +          Y
Sbjct: 296 MIGKFSIYNVLASIGAGIASGISISQIIKSAEEVKGVAGRFETVDAGQDFSVIVD----Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P S+K A+  + Q +         +   +   G+  +S    +AE+   Y+   ++ 
Sbjct: 352 SHTPDSLKNALETVKQFALKR------IFTIVGCGGDRDRSKRPLMAEIACQYSTDPIFT 405

Query: 407 SG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           S        + +   +   +     +          +   +   GDV+++  K 
Sbjct: 406 SDNPRSEDPIQILRDMEEGVKGESYKTIADRKEAIHYAVKNASKGDVILIAGKG 459


>gi|84394439|ref|ZP_00993155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
 gi|84374938|gb|EAP91869.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio splendidus 12B01]
          Length = 494

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/460 (15%), Positives = 143/460 (31%), Gaps = 42/460 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +    V  + +DSR+    + F A+ G   DG  FI  AV  G   V+   D     G 
Sbjct: 21  ELESIAVEQLELDSRATKEGDIFVAVVGHAVDGRRFIDKAVALGTHAVIAQADAEKPHGL 80

Query: 81  LS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS----- 131
           +     +PV  ++++   L++LA          +I +TG+ GKTT  +++   L      
Sbjct: 81  IEWLDTVPVIYINNLNLVLSELAGRVYSSQATKLIGVTGTNGKTTITQLIAQWLDLVGQR 140

Query: 132 ------SIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLV 182
                 +       + +  N  G  + + R   +          + +S  G ++     +
Sbjct: 141 SAVMGTTGNGFLDNLKTAANTTGSAIEIQRTLSELAAEKAIYTAMEISSHGLVQGRVKAL 200

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + V T ++  HL     +EE A AK  +F   +    +    D+     +   S+A+
Sbjct: 201 DFEVGVFTNLSRDHLDYHGTMEEYALAKKSLFTQHKCKHAVINVDDEVGKAWMSDLSNAI 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +      G                    +         ++    IG   A N+L+    
Sbjct: 261 AVSLSPLTG--YQQSVWASDVAYAETGIQLSFDGSWGQGKLSVPLIGQFNASNVLVAFAT 318

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L  D    +       P  GR + ++             + +A           L+ 
Sbjct: 319 LLSLGIDKQILVDTAPQLQPVIGRMELFQVPNKAKVVVDYAHTPDA-------LEKALAA 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LA 413
           +  H  G+  A+ G     G    +    +    +      + +S  +            
Sbjct: 372 LRVHCSGKLWAIFG----CGGDRDTGKRPMMSATAEQFADKIIISDDNPRSEEPALIVKD 427

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   L +               F        D++++  K 
Sbjct: 428 MLAGLSKPEAAFVEHDRYQAVKFALEQAGSDDIILLAGKG 467


>gi|146276738|ref|YP_001166897.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145554979|gb|ABP69592.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 149/467 (31%), Gaps = 36/467 (7%)

Query: 11  LQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L A+    +G    +  V G+++DSR + P   F A+ G    G  F+  A+  GA  ++
Sbjct: 8   LSALGLTPVGGRGAEITVRGLAVDSRHLRPGFLFAALPGSCSHGASFVPAALAAGARAIL 67

Query: 70  VNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +    A         +  +   +D   AL   A     R  AT++A+TG+ GKT+    
Sbjct: 68  TDAAGAALAREALQGSTAALIVAEDPRQALAGAAALWFGRQPATMVAVTGTNGKTSVATF 127

Query: 126 LTIALSSIKKTYACIGSYNNH----------IGVPLTLARMPVDVDFGIF---ELGMSHL 172
                +++      IG+                 P+TL R+  D          +  S  
Sbjct: 128 TRQIWAALGHAAINIGTTGVEGAFAAPSAHTTPEPITLHRLLADAAEAGVTHAAMEASSH 187

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     V    A  T     HL      E   +AKA +F  +       +   D   
Sbjct: 188 GLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFAAKAGLFTRVLPDEGTTVVNLDDPR 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
               A       + +   G    AD +L   +  +    +    QG         IG   
Sbjct: 248 GPEIAALARDRGQKVIGTGFHPEADLRLLSQRFDATGQDLRFSWQGTPHLTRLPLIGGFQ 307

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N+ +  G+        +             GR +      N      +D ++  +  +
Sbjct: 308 AWNVAVAAGLAIGAGDAPERVFATFPQLQGVRGRMQLAATRQNGA-SVFVDYAHTPDALA 366

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
                  L  + PH  GR I V G     G         L    +  +   ++++     
Sbjct: 367 T-----ALKALRPHVMGRIIVVFGA----GGDRDRGKRPLMGRAAADHADVLYVTDDNPR 417

Query: 409 -FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A++ A+  +    H         L    +L  GD +++  K 
Sbjct: 418 TEDPAAIRRAILEACPEAHEVGDRAEAILRGVDALTPGDALLIAGKG 464


>gi|330888578|gb|EGH21239.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 350

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 161/353 (45%), Gaps = 11/353 (3%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+TGS GKTT KEML   L +     A  G+ NN +GVPLTL  +  +    + ELG S 
Sbjct: 1   AMTGSSGKTTVKEMLASILRTRGTVLATRGNLNNELGVPLTLLELAPEHSAAVIELGASR 60

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           +GEI F   L +PH+A+IT    AH+  F G ++I  AK EI EGL  +GT  LN +D  
Sbjct: 61  VGEIAFTVSLTKPHVAIITNAGTAHVGEFGGPDKIVEAKGEILEGLNASGTAVLNLEDKA 120

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F + + ++    I T      + +                  +       +V  + +G H
Sbjct: 121 FPVWRKRAGNRNILTFALADPAADLHASDLSNDAR-GCPGFTINSPLGVAQVQLNLLGAH 179

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L        L   ++  +  L+   P +GR      +       +ID++YNANPA
Sbjct: 180 NVTNALAAAAAACALGVTLEGIVAGLNNVQPVKGRAVVQIASNGT---RIIDDTYNANPA 236

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S+ AA+++L+  +    GR + VLGD+ E+GE ++  H D+    +   +S ++  G  +
Sbjct: 237 SINAAVNILTGFT----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-GKVSALYAVGPLM 291

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
                A     H ++  +   L   + +       +++K S S     ++  L
Sbjct: 292 THAVSAF--GEHAYHFASQAELIAALGAEQDPNTTLLIKGSRSAAMENVVAAL 342


>gi|90416331|ref|ZP_01224263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
 gi|90332056|gb|EAS47270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2207]
          Length = 516

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/501 (15%), Positives = 169/501 (33%), Gaps = 58/501 (11%)

Query: 4   LWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L  + +    +   P   + G+S+DSR +   + F A+KG   +G  +I  A++
Sbjct: 9   MTTLSELLAEFVD---VSRCPATPITGLSLDSREVTTGDLFIALKGTQTNGAQYIAQALK 65

Query: 63  KGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V++   +  A  G LS+PV  V  +   ++ +A +          + AITG+ GK
Sbjct: 66  QGAAAVLIEAGEETADHGQLSVPVIAVPKLSEFVSDIAGSFYAHPSRQMAVTAITGTNGK 125

Query: 120 TTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------- 166
           TT  ++L                       +      +A +  D +    +         
Sbjct: 126 TTCAQLLANLFELLGEPAGCVGTVGYGTVANSAADNQVAELLPDTEIAASDILTTPDAVA 185

Query: 167 -----------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                            +  S  G ++     +R   A+ T ++  HL     +   A+A
Sbjct: 186 MQRILAELRDAGARRVAIEASSHGLVQRRIAGLRIDTAIFTNLSRDHLDYHGDLNSYAAA 245

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+ +   +       +N DD+   L+ A          YSF ++  AD    + +  +  
Sbjct: 246 KSRL-FAMSGLKHAVINLDDNVGRLILANLDPAVDGITYSF-ENHTADIHCDRIELGAST 303

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E+        +    +G     N+L  +G   +    +D  + A +      GR + 
Sbjct: 304 LSAELVTPWGRGRLTSPLLGKFNLANLLAVIGAAGMQGFKLDDILHAAAKLKAVPGRMEI 363

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              +           + +A   ++         +     G+ + V G     G+  +   
Sbjct: 364 VDPSARPLVVVDYAHTPDALDKAL-------RALRLQCSGKLVVVFG---CGGDRDRGKR 413

Query: 390 IDLAEVLSLYNISHVWLSGFHVL-----ALKDA--LPRSIHVHYSETMDGLFLFIQSSLV 442
            ++  V        V ++  +        + D   L  S  V              ++  
Sbjct: 414 AEMGRVADQL-ADLVVVTSDNPRSESPEKIIDQVLLGISRKVLAVADRRDAIRAAINAAA 472

Query: 443 DGDVVVVKSSNSCGFYRLINL 463
             D+V++        Y++++ 
Sbjct: 473 VDDIVLIAG-KGHEAYQIVDA 492


>gi|333027788|ref|ZP_08455852.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
 gi|332747640|gb|EGJ78081.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces sp. Tu6071]
          Length = 521

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%)

Query: 7   FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 77  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196

Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +                +AV   ++P H+   SG+E+   AKA++F        +  + D
Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNHDD 256

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +    L+           I +F    + D   R        +     + G          
Sbjct: 257 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVEIGPTDSTFTVVGPDGSRYPARA 311

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
               A N+  TL  V+ L         A        G   R         +  + +  + 
Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 370

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  SVL  +    EGR   VLG     G+   +    +    +    + V  S 
Sbjct: 371 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 424

Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451
                  LA+  A+              +            + +    GD V++  K 
Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 482


>gi|53803414|ref|YP_114847.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
 gi|53757175|gb|AAU91466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylococcus capsulatus str. Bath]
          Length = 479

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/459 (18%), Positives = 146/459 (31%), Gaps = 43/459 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G+S+DSRS+   +AFFA+ G    G  +   AV++GA +VV ++          
Sbjct: 2   PDIPVYGLSLDSRSVRTGDAFFALSGSREHGSRYAEEAVRRGALIVVYDSSGAGVRAPEP 61

Query: 83  IPVFGVD--DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              F V   D+   L  +A            +IA+TG+ GKT+    +  AL     T  
Sbjct: 62  GLGFAVPVRDLGRHLGSIAARFFGHPSETLDVIAVTGTNGKTSCTHFIAEALQPDHPTAV 121

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLV 182
                    G+P  L R+       I                  L  S  G+ +   + V
Sbjct: 122 IGTLGW---GLPGNLRRIAHTTPDAIEIHAILATLKAQGFRLAALEASSHGQAQGRINGV 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A+ T I   HL+     E   +AK  +              DD   + +     A 
Sbjct: 179 HCRGALYTRITRDHLNYHGTFESYLAAKLGLLANPALEFVAVTL-DDPSVDAILRSVPAG 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                YS G  ++ DF + + +   +           +   +      +   N    LG 
Sbjct: 238 VKVIGYSLGGGESVDFPVLRVEALEQTREGLHLKVDYAGRTIEIDAPVYGDFNAENLLGT 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +++L      A  A S          R       G   ++D ++  +        +VL+ 
Sbjct: 298 LAVLVGLGYPAEAAASRVGRVRPVPGRMERFRENGLTVIVDYAHTPDA-----LRNVLTS 352

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417
           +  H   R   V G     G             ++     HV ++  +       A+   
Sbjct: 353 LRRHCRERLWVVFG----CGGDRDRGKRPEMGAIAARIADHVIVTDDNPRSEPGDAIVQD 408

Query: 418 LPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        V              +   DGD+V+V  K 
Sbjct: 409 ILAGCGETAVTVVRDRRTAIRAAIAQAGDGDIVLVAGKG 447


>gi|297616976|ref|YP_003702135.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144813|gb|ADI01570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 493

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 143/477 (29%), Gaps = 45/477 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L+  ++           + G+  DSR I P   F  I G   DGHD++L AV  
Sbjct: 1   MARLENLISGLEVIETSGDLDKEIKGVQYDSRKIEPGYLFVCIPGFKVDGHDYVLPAVGA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  ++V   +    G+  + V  V D   AL  +A            +I +TG+ GKTT
Sbjct: 61  GAIALLVEKPVA---GTQGVTVVRVKDTRKALPIVASNFYGAPSRQLRLIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167
           T  ++T  L                  G   +          +   +   + E      +
Sbjct: 118 TTHLITSVLEEAGYQVGILGTLYARWRGKQESMAHTTPESVDLERFIRRVVDEGGDYTVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           +    AV T +   HL     +++   AK ++F  L+     F   
Sbjct: 178 EVSSHALDLGRVDCLDFDAAVFTNLTQDHLDYHRTMDDYREAKLKLFRRLKNKDGHFAVI 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +         +        + ++G +  A  +  + +   E S   ++     + +  + 
Sbjct: 238 NRDDPSWTVFRDATPS--RVVTYGITDEAAVRATEVRVEPEGSCFTLKWPEGDLRLSLNL 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+    N L             +   + L       GR +  +C  +         + +
Sbjct: 296 SGWFNVSNALAAAAFALKEGISPEVIKRGLEKVSGIPGRFETVKCGQDFTVIVDYAHTPD 355

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                     ++L       + R I V G     G         L   ++        ++
Sbjct: 356 G-------LENILKTARAIAKKRIITVFG----CGGDRDRGKRPLMGKIAAECSDFSIIT 404

Query: 408 GFHVL---------ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   + +  +                 +     D+V++  K 
Sbjct: 405 SDNPRSEDPLAIIEDIVTGVKKVPNSRYTVIADRRVAIGQAINMAQAEDMVIIAGKG 461


>gi|291520211|emb|CBK75432.1| UDP-N-acetylmuramyl-tripeptide synthetases [Butyrivibrio
           fibrisolvens 16/4]
          Length = 490

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 151/474 (31%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ +  DSR +     F  I G   D HDFI   ++KG
Sbjct: 1   MKLTTLLEELDYELYAGELDKEISTLVYDSRKVEKDSVFVCISGTVRDAHDFIPDVIEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +++  D+    G   I    V +   AL  L+ A       +   I ITG+ GKTTT
Sbjct: 61  ATAIIIEKDVEPVDG---ITYIKVANSRQALAILSAAYFGHPAKELKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             M+   L         IG+  + +G     A       + + E              + 
Sbjct: 118 TYMVKSILEKAGIKTGLIGTIESIVGEERIPAVNTTPESYRVQELFRQMVDAGLDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +          I V T + P H+      E       +                
Sbjct: 178 VSSQALMLHRVSGFTFDIGVFTNLEPDHIG-----ENEHKDFEDYMHCKSLLFQQCKVGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +                +  +G  K+ D      +  +E   + V+      E +   +
Sbjct: 233 FNGDSEHIEGILKGHTCDVIKYGYGKDNDLIAENVELLNENGALGVRYHITGKEDMTVEV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  V+I         K  S       +G+     ++  F  +ID ++NA
Sbjct: 293 NVPGTFSVYNSLTAVAICKQFNVAEDKIKSALMNVHVKGRIELVPVSSKFTVMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  S+L+ +  +  GR + + G     G  ++S   ++ EV S      V  S 
Sbjct: 353 -----MALESLLTTLKAYEPGRLVCLFG---CGGNRAKSRRYEMGEVSSKLADLTVVTSD 404

Query: 409 -----FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +  ++  +GD++V+  K 
Sbjct: 405 NPRNEEPMDIINDILIGVKKADGEYVTVPDRKEAIRYCLTNAKEGDIIVLAGKG 458


>gi|262170647|ref|ZP_06038325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
 gi|261891723|gb|EEY37709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus MB-451]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/480 (15%), Positives = 152/480 (31%), Gaps = 42/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN      +L+      +   +    ++ + +DSR I   + F AI+G   DG  FI  A
Sbjct: 1   MNTPKALSELIAPWLELADTDLASLAISHLELDSRQIKSGDTFVAIQGHAVDGRQFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA +V+   D     G       +PV  + ++   L++LA       +  +I +TG+
Sbjct: 61  IAQGANIVLAEADAQHVNGLVENREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGVTGT 120

Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162
            GKTT  +++   L       ++  T               T   + +            
Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S  G ++     +     V + ++  HL     ++  A AK  +F        
Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D    +  K   HA+G+  +     ++    +    +       ++        E
Sbjct: 241 IINVDDAVGAQWGKQLPHAIGVSLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+L+ L  +  L  +    +       P  GR + ++           
Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREHKAKMVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  G+  A+ G     G         +   ++     
Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQFAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L      H          +   +    D++++  K 
Sbjct: 408 RVILTDDNPRSESPQAIVADMLVGLTHPERAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|331645195|ref|ZP_08346306.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
 gi|281177305|dbj|BAI53635.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE15]
 gi|330909932|gb|EGH38442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli AA86]
 gi|331045952|gb|EGI18071.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M605]
          Length = 495

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATICFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|254372481|ref|ZP_04987970.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella tularensis
           subsp. novicida GA99-3549]
 gi|151570208|gb|EDN35862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Francisella novicida
           GA99-3549]
          Length = 479

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       ++ + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQK----CVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +               + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYYKKYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    I +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNMTQAPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            ++          +  + +    F   +   GD++++  K 
Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|51598462|ref|YP_072650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
 gi|81610158|sp|Q662G3|MURE_BORGA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|51573033|gb|AAU07058.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Borrelia garinii PBi]
          Length = 508

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 158/475 (33%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++G++  S+ + P+  FFA+ G  +DGHDFI  A+QKG+ +
Sbjct: 14  QDLIKHVKGSL-----DLEISGVTYSSKLVLPRYVFFALPGIRFDGHDFIETAIQKGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + DM     S ++    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDM--DFYSPNVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + + L         I +     G                          +  +V + I
Sbjct: 127 YYIYLLLKKKGVKVGFISTVFFDDGNGSLIKNPYRQSTPESTEIHLFLSNMVKNNVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   +AK  +F  +       
Sbjct: 187 LESTSHGLDLKTARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNAKLGLFRSVS---DDA 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +F +   +       K+     KS  ADF +    +  + +  E   +G      
Sbjct: 244 GFGVINFDDPYYSDFKNAVKKSFTYSLKSSKADFFVSFIDEKIDSTRFEFYHKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N++  L +VS +       I    +   K   G+     L Q F  +ID 
Sbjct: 304 VSLLGSFNVENIMAALILVSQILNSDIQDIV-DKLICIKSLDGRMDSVNLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVAKRFLQGQIADIYSDLI 413

Query: 405 WLS-----GFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVV 447
            L      G + + +   + + I        + +            S    GD+V
Sbjct: 414 VLCDEDPRGENSMYIIKDIAKGIVNKVVNQDLFFIPDRRLAIEKAISLARAGDLV 468


>gi|269960236|ref|ZP_06174611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
 gi|269835043|gb|EEZ89127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio harveyi 1DA3]
          Length = 493

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 147/459 (32%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              V+ + +DSR +     F AI G   DG  FI  A+Q+GA  V+       + G++  
Sbjct: 22  SILVSELELDSRRVQSGTTFVAIIGHVVDGRKFIPTAIQQGANAVIAQACEQKAHGTIEI 81

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              +PV  +D +   L+++A          +I +TG+ GKTT  +++   +  +    A 
Sbjct: 82  VDDVPVIYLDALDKCLSEIAGHLYTYPTMDLIGVTGTNGKTTITQLIAQWIDLVGSKAAV 141

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVR 183
           +G+  N  G    L          +                  L +S  G I+     + 
Sbjct: 142 MGTTGN--GFLDNLQEAANTTGNAVEIQKTLSSLAEQKAQYTALEVSSHGLIQGRVKALS 199

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
               V T ++  HL     +EE A+AK  +F   +    +    D       K  ++AL 
Sbjct: 200 FAAGVFTNLSRDHLDYHGTMEEYANAKLTLFTEHQCGHAVINVDDVVGAAWAKQLNNALA 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    +     +                +E   +     +    IG   A N+++    +
Sbjct: 260 VSLKPT--TEFSQSVYANHIAYAESGITIEFDGKFGEGTLHAPLIGEFNAANLMLAFTTL 317

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       +       P  GR + ++   N         + +A           L  +
Sbjct: 318 LSLGFSKQDLLATAGQLQPVLGRMELFQADDNAKVVVDYAHTPDA-------LEKALQAL 370

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLAL 414
             H +G   A+ G     G    +    +   ++      V L+  +         +  +
Sbjct: 371 RVHCQGELWAIFG----CGGDRDAGKRPMMAEIAERLGDKVVLTDDNPRSEDPALIMKDM 426

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L +               +        D++++  K 
Sbjct: 427 LVGLTKPAEAIVQHDRFKALSYALEHASSQDIILLAGKG 465


>gi|258542965|ref|YP_003188398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634043|dbj|BAI00019.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637103|dbj|BAI03072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640155|dbj|BAI06117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643212|dbj|BAI09167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646267|dbj|BAI12215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649320|dbj|BAI15261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652306|dbj|BAI18240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655364|dbj|BAI21291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 489

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 162/473 (34%), Gaps = 43/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL A+      +     ++ I+ DSR I P   F A+ G   DG  FI  AVQ GA 
Sbjct: 5   LSTLLAAVG--LPILPENPEISAITADSRQIKPGTIFAALPGVKTDGRAFIAMAVQNGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+  TD     G  + P+    +   AL  +A          + AITG+ GKT+T + +
Sbjct: 63  AVLAPTDTQWPTGVPTCPLILAPNPRHALALMAAVLAGPQPQHLAAITGTNGKTSTADFI 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMS 170
               +      A IG+         +++   +     +                  L  S
Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEDTSISFPALTTPDPVALANGLAALTQAGFNHVALEAS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +    A  T +   HL     IE   +AK ++F+ L     I     D 
Sbjct: 183 SHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPQQAIAAANADM 242

Query: 231 FFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             + L+A ++ A            +    +L           + ++  G +  V+    G
Sbjct: 243 DAQTLQAIRALAARRNLRLRLVGEQGTTLRLMAHNALPAGQELSIEHNGHTSTVLLPIPG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L+ + + +   A++   +  L       GR +R     N      +D ++  +
Sbjct: 303 RFQADNVLLAVALAAQDDAEIADILPLLPHLKGVRGRLERATVLPNGACA-YVDYAHTPD 361

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +      +L+ + PH  G+ + VLG     G    S    L    ++       ++  
Sbjct: 362 ALA-----RLLASLRPHARGKLVVVLGA----GGDRDSGKRPLMGQEAIKGADIAIITDD 412

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +K   P+++ +              S L   DV+VV  K 
Sbjct: 413 NPRTENPASIRAEIKAGAPQALEI---ADRKQAIAEALSMLKADDVLVVAGKG 462


>gi|318057549|ref|ZP_07976272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actG]
          Length = 521

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%)

Query: 7   FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 17  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 77  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 136

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 137 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 196

Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +                +AV   ++P H+   SG+E+   AKA++F        +    D
Sbjct: 197 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNYDD 256

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +    L+           I +F    + D   R     +  +     + G          
Sbjct: 257 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 311

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
               A N+  TL  V+ L         A        G   R         +  + +  + 
Sbjct: 312 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 370

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  SVL  +    EGR   VLG     G+   +    +    +    + V  S 
Sbjct: 371 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 424

Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451
                  LA+  A+              +            + +    GD V++  K 
Sbjct: 425 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 482


>gi|170728857|ref|YP_001762883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella woodyi ATCC 51908]
 gi|169814204|gb|ACA88788.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella woodyi ATCC
           51908]
          Length = 502

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 154/475 (32%), Gaps = 44/475 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL+ +            VN +S+DSR +   + F A+ G   DG D+I  A + GA + +
Sbjct: 2   LLKDLLAPWFHYSGSESVNKLSLDSREVDQGDLFVAVPGHQVDGRDYIDVAAKNGAQVSL 61

Query: 70  VNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           V+TD     G +   +        +   L+ LA  A      +  ++ +TG+ GKT+  +
Sbjct: 62  VHTDNPEMHGKVLTSNSTQIFFFQLSRQLSALAAQAYPLPVERLKLVGVTGTNGKTSITQ 121

Query: 125 MLTIALSS--------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           ++   L                +       G+        +       ++   +  + +S
Sbjct: 122 LMAQLLVCLGKQPAVMGTLGNGLWGGLVDSGNTTADPITIMAQLNAFNELGADLCAMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G I+     V   +A+ T ++  HL     ++    AK  +F+       +    DD 
Sbjct: 182 SHGLIQARVDAVPFDLAIFTNLSRDHLDYHGTMQAYGEAKFRLFKFPSLKSGVINLDDDL 241

Query: 231 FFELLKAKSHAL---GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             + L     A          S   S++A    +     ++    ++        +    
Sbjct: 242 GKQWLAQSDSAKLIGYSIAGDSDTVSQDAAIYTKGNHFHNQGVRAKLVWPEGCGNIDSPL 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+L  L  +  L  D++  + A+   +   GR +++              + +
Sbjct: 302 LGAFNLSNLLAALAGLYQLGFDMNALLNAVPKLNAVAGRMEQFTTENGITLVVDYAHTPD 361

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A           L  +  H EG    + G     G         L    +      + ++
Sbjct: 362 A-------IEQALKALRGHCEGELWCLFG----CGGDRDKGKRPLMAQSAEAYADRIMVT 410

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   L R          +     + ++   GD++++  K 
Sbjct: 411 SDNARSESPDEIINDVLAGLNRPERAVTQVDRELAIREVLAAAKPGDLILLAGKG 465


>gi|323137898|ref|ZP_08072973.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
 gi|322396901|gb|EFX99427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylocystis sp. ATCC
           49242]
          Length = 483

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 98/453 (21%), Positives = 156/453 (34%), Gaps = 43/453 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G+S DSR+I    AFFAI G   DG  ++  A  +GA +VV            S+P
Sbjct: 19  IEIAGLSADSRAIREGFAFFAIPGHAGDGLSYVDDARARGARVVVAQR-----QSECSLP 73

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------TYA 138
           +  VDDV   L   A     R    I A+TG+ GKT+    L    +++        T  
Sbjct: 74  LVVVDDVRAELAHAAARFHPRQPRVIAAVTGTSGKTSVVASLRQIWTAMGHEAASLGTVG 133

Query: 139 CIGSYNNHIGV-----PLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVIT 190
            + S   H G      P+ L R+  D    G+    +  S LG  +     VR  +A  T
Sbjct: 134 VVDSKGAHYGALTTPGPVELHRILDDLAGRGVTHLAMEASSLGIDQRRLDGVRLSVAGFT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
             +  HL +   +EE  +AK  +F+ L + G   +   DS      A         ++  
Sbjct: 194 NFSRDHLDHHRDMEEYFAAKMRLFDTLSQPGRTAVIDADSDVAPRVAAVCEKRGLNVFGV 253

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G    A   +R+ +  +  + ++++  G    V     G     N L+  G+      D 
Sbjct: 254 GAKGEA-IAVREARAHALATSLKLRHAGVDYSVELPLAGAFQTSNALVAAGLAIAAGDDP 312

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                AL+      GR +          F               A   VL+ + P  + R
Sbjct: 313 ARVFSALNELKGAPGRLEFIGERDGAPVFVDYA-------HKPDALEKVLATLRPLTKRR 365

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL-----PR 420
            I V G     G         L   ++        ++          A++ A+       
Sbjct: 366 LIVVFG----CGGDRDRGKRPLMGEIAARAADVAIVTDDNPRSEDANAIRAAIIEGARGG 421

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +              + L  GDV+VV  K 
Sbjct: 422 GAEIIEIADRGEAISKAVADLRAGDVLVVAGKG 454


>gi|318079768|ref|ZP_07987100.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces sp. SA3_actF]
          Length = 526

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 91/478 (19%), Positives = 149/478 (31%), Gaps = 45/478 (9%)

Query: 7   FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             DL +A+     G        V GI+ DSR++ P + + A+ G  + G DF   A   G
Sbjct: 22  LDDLAEALGVEPRGGRGPAPADVTGITHDSRAVRPGDIYAALPGARFHGADFAAQAASLG 81

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A   + +      + +  +PV  V D  G +  LA             I ITG+ GKTTT
Sbjct: 82  AVAALTDPAGAERVLAAGLPVLVVGDPRGRMGALAARIYGNPGDDLLQIGITGTSGKTTT 141

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTH 180
             ++   L +   +   IG+    IG     +    P   D       M   G       
Sbjct: 142 AYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAVMRERGVDAVAME 201

Query: 181 LVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +                +AV   ++P H+   SG+E+   AKA++F        +    D
Sbjct: 202 VSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTRARSRRGVVNYDD 261

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +    L+           I +F    + D   R     +  +     + G          
Sbjct: 262 EYGRRLITEA-----EVPIVTFSAEGHPDADWRAEDVETGPTDSTFTVVGPDGSRYPARA 316

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
               A N+  TL  V+ L         A        G   R         +  + +  + 
Sbjct: 317 PLPGAFNVANTLAAVAALAEAGTDPRVAAEGIGAVPGVPGRLERVDEGQPYLAVVDYAH- 375

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                 A  SVL  +    EGR   VLG     G+   +    +    +    + V  S 
Sbjct: 376 ---KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSD 429

Query: 409 ----FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451
                  LA+  A+              +            + +    GD V++  K 
Sbjct: 430 NPRSEDPLAILAAMLAGAAEVPVHERGDVLVDADRAAAIAAVVARAEPGDTVLIAGKG 487


>gi|293378750|ref|ZP_06624908.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
 gi|292642678|gb|EFF60830.1| Mur ligase middle domain protein [Enterococcus faecium PC4.1]
          Length = 496

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 182/392 (46%), Gaps = 9/392 (2%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V    ++    S++ P F V+D    L +L+   R      ++AITGS GKT+T+ M+
Sbjct: 81  VIVTEKPIMD--PSVTTPQFIVEDSRKFLLELSAKLRSCFVNPVVAITGSAGKTSTRMMI 138

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RP 184
           T  L   K       ++N    VPL ++++  + D    E+ ++ L      +     + 
Sbjct: 139 THLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQ 197

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHAL 242
            IA++T+I  AHLS+    + +A  KA+IFEGL++ G   +N D     F +L + +   
Sbjct: 198 DIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKR 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K +       + D  +++  Q  E   + V   G+ + +        M  N L  L +
Sbjct: 258 TSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIV 317

Query: 303 VSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              L  ++   IK    F P  +   +    +     FT ID+++NA+  SMK AI+   
Sbjct: 318 AKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFD 377

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I P  +G ++ +LG + ++G+ ++  H  + E L+    +H++  G H   L +   + 
Sbjct: 378 GIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKT 437

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              + + +++  L   +++ L++  +V+ K S
Sbjct: 438 DDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469


>gi|315181135|gb|ADT88049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii NCTC 11218]
          Length = 495

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 160/480 (33%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + T   L Q I        P      V  + +DSR I   + F AI G   DG  FI  A
Sbjct: 1   MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60

Query: 61  VQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA LV+          +     ++PV  ++ +   L++LA          +IA+TG+
Sbjct: 61  ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120

Query: 117 VGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166
            GKTT  +++   +                + +H+          V+V   +FE      
Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V     V + ++  HL     ++  A AK  +F   E    
Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D+      +   HA+G+        +        +         ++V     + +
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNA--KPNAEQALWAVQVSYAESGITIDVDGSWGAGQ 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+++ L  +  L  ++D  + A     P  GR + ++           
Sbjct: 299 LRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H +G+  A+ G     G    +    +   ++     
Sbjct: 359 AHTPDA-------LEKALRALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIAEAFAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L    H +             S   + D++++  K 
Sbjct: 408 RVILTDDNPRSEDPQAIVNDMLAGLKAPQHANVEHNRFDALRTALSQAGEQDIILLAGKG 467


>gi|302391526|ref|YP_003827346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
 gi|302203603|gb|ADL12281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acetohalobium arabaticum DSM 5501]
          Length = 496

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/482 (16%), Positives = 156/482 (32%), Gaps = 50/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   ++++  ++   +       + GI+ DSR++     F  I+G   DGH++I  A+  
Sbjct: 1   MKNLNEVVTDLKIGVLQGDLDSRIAGIAYDSRNVETDYLFVCIEGFTDDGHNYIEEAIDS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  ++V  ++        + V   DD    L +++ A          ++ +TG+ GKTT
Sbjct: 61  GATALLVEKEVEV---DSEVTVIKTDDTRLGLAEVSAAFYDYPSRELKVVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFE--L 167
              ++   L         IG+  N +      ++            +   +D G+    +
Sbjct: 118 NTYLIESILKKAGYKLGLIGTIKNKVSDQTFDSQRTTPEALDINKLLAQMIDKGVTHVVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           +   +A+ T I   HL       E  +AK ++F  L+ +       
Sbjct: 178 EVSSHALDLNRVAKIDFDVAIFTNITQDHLDFHDSFSEYLAAKKKLFSSLKDSSEKTAII 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +    +    +        + ++G  K+A+ + +            ++     ME+  + 
Sbjct: 238 NID--DPHSDEFLEAANSKVLTYGIEKDANLKAKDITISPTGVEFGLESTIGEMELDLNI 295

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G     N L  +G    L  D+D     L       GR +    A + G        Y 
Sbjct: 296 TGLFNVYNTLSAIGAGLSLGVDLDEIKAGLEEIQGIAGRFEIIEEAQDFGVIVD----YA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWL 406
             P S++  +          EGR I V G     G         +  +V        V  
Sbjct: 352 HTPDSLRNILETAHDF---VEGRIIVVFG----CGGDRDKDKRPIMGQVAVELGDFAVVT 404

Query: 407 SG-----FHVLALKD---ALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVV-- 449
           S           + D    +     +          E       +   S    D+V +  
Sbjct: 405 SDNPRSEEPAEIIADIEVGIKEKDKIKGEDCDYIIIEDRAEAINYGIESAQPDDLVFIVG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|296116432|ref|ZP_06835046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977025|gb|EFG83789.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 491

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 93/459 (20%), Positives = 159/459 (34%), Gaps = 37/459 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G      V+GI+ DSR + P+  F AI G   DG  FI  A+Q+GA  ++   D  A++ 
Sbjct: 16  GCGHDPEVSGITADSRQVRPRMIFAAIAGNRADGRAFITQALQQGACAIISTPDACAAVR 75

Query: 80  SL--SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I     DD   AL+ +A A        ++A+TG+ GKT+T E +           
Sbjct: 76  QAGHDIACIATDDPRHALSVMAAALMPAMPGHVVAVTGTNGKTSTVEFVRQIWQHQGHAA 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHL 181
           A IG+          L+   +    G+                  +  S  G  +     
Sbjct: 136 ASIGTLGIISPTVPALSGPSLTTPDGVTMALTLGTLHEHGVDDIAIEASSHGLAQRRLDG 195

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSH 240
           V    A  + +   HL     ++   +AK  +F+ L   G + +   D     L+A ++ 
Sbjct: 196 VPLAAAGFSNLTRDHLDYHGDMDSYRAAKLRLFDTLLPPGGLAVANADMEGATLEALRAI 255

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A+                +L +     +   ++V+  G   EV     G +   NML+  
Sbjct: 256 AVKRGLDLRLVGESGDAIRLLRVTPRPDGQVLDVECNGTRHEVATRLPGRYQVDNMLLAA 315

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+ +     +  AI  L       GR +      N      +D ++  +         +L
Sbjct: 316 GLAASSRDMMSAAINCLPALVGVRGRMEHAVTLPNGA-AVYVDYAHTPDALE-----RLL 369

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL- 414
             + PH  GR +AV G     G         L   ++        ++          A+ 
Sbjct: 370 LSLRPHASGRLVAVFGA----GGDRDRGKRPLMGAVAGRLADMAIVTDDNPRTEDAAAIR 425

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ +  +                 S L  GDV+VV  K 
Sbjct: 426 REVMAGAPDASDIGGRRQAIAEGLSRLKAGDVMVVAGKG 464


>gi|260596510|ref|YP_003209081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter turicensis z3032]
 gi|260215687|emb|CBA28019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 501

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 11  NLRDLL----APWVAGLPARALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 66

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             +V      A+ G +     +PV  +  +   L+ LA            +I +TG+ GK
Sbjct: 67  AAIVAEAKGEATDGEVREIHGVPVIYLSQLNERLSALAGRFYDEPSDRLRLIGVTGTNGK 126

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165
           TTT +++      + + +       N  +G                            + 
Sbjct: 127 TTTTQLIAQWCQRLGETSAVMGTVGNGLLGKVSPTENTTGSAVDVQHVLSGLAAQGATVA 186

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++    V T ++  HL     +E   +AK  +F        +  
Sbjct: 187 AMEVSSHGLVQHRVAALKFAATVFTNLSRDHLDYHGDMEHYEAAKWLLFSAHHYGQAVIN 246

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +     +  + +    +     + +         E+ 
Sbjct: 247 ADDEVGRRWLAKLPDAVAVSMENNINPDCHGRWLRADAVEYHDRGATLRFSSSWGDGEIE 306

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ LG +  L   +   +++     P  GR + +              
Sbjct: 307 SRLMGAFNVSNLLLALGTLLALDYPLAALLESAPRLQPVNGRMEVFSAPGKPTVVVDYAH 366

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 367 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADVV 415

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV++  K 
Sbjct: 416 VVTDDNPRTEDPRAIIADILTGMLDAGRARVVEGRAEAVTNAIMQAAENDVVLLAGKG 473


>gi|299144028|ref|ZP_07037108.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518513|gb|EFI42252.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 511

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/489 (16%), Positives = 149/489 (30%), Gaps = 56/489 (11%)

Query: 5   WTFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                +L+ I+             +  I  +S+ I     F AIKG   DGH +IL A +
Sbjct: 1   MNLRKILKNIEILDTKNFIDFDVDIKKICYNSKFITESSLFVAIKGYITDGHKYILQAYE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT 120
           KGA   +V            IP   V++    L  ++         K  I+ IT + GKT
Sbjct: 61  KGAVCAIVE-----DFIDCEIPQLKVENTRIELANVSKNFYDDPSQKLNIVGITATNGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164
           TT  ML    +        IG+                             +   ++   
Sbjct: 116 TTSFMLDKIYNDAGYRTGIIGTVYTKYSDITIPSVLTTPESLELQSFFRDMLKKKIEKVT 175

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  S   E  +    +  +I      +  H+      E+   AK+++ +   K     
Sbjct: 176 MEVSSSS--EELYRVKNIDFNIVAFNNFSREHIDQHGSFEKYYEAKSKLVKEASKNAVAI 233

Query: 225 LNYDDSFFELLKAKSHAL--------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           LN D    + L  ++ A                     +  F    +       + +  L
Sbjct: 234 LNMDFDHIKDLLTQTKARVITYSLENNDYDFSISELDLSTGFGKYIFNVNRNIDFNDFVL 293

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           + +S E+     GY    N +  + I  +   DVD   K++S F   E R +       +
Sbjct: 294 KKQSFEINLSVAGYSSVMNSVAAIIISLVQNIDVDIIKKSISAFSGVERRFEMIYDEKFK 353

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                     N +       +  LS++         A+ G+         +   + A+ L
Sbjct: 354 IIDDHYANVKNIDV-----TLETLSKMKYKNFRMLYAIRGNRGVNLNRETA--EETAKWL 406

Query: 397 SLYNISHVWLS---------GFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLV 442
              +    + +                 +         +I+V   + ++     I  +  
Sbjct: 407 KKLDAKTFYATLSKDTVSKKDEVSKEELEIFLNIMEKYNINVKVFDNLENSVYEILKTAD 466

Query: 443 DGDVVVVKS 451
            GDVV+   
Sbjct: 467 KGDVVLFAG 475


>gi|119511957|ref|ZP_01631054.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
 gi|119463377|gb|EAW44317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nodularia spumigena CCY9414]
          Length = 496

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 160/476 (33%), Gaps = 41/476 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL A+ G     +    + G+  +S +    + F  + G   DG DF   A+  G
Sbjct: 1   MKLRELLAAVDGVDYQGLADAEIKGLKTNSHACGVGDLFIGMPGTRVDGGDFWQSAIASG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           A   +V+   +         V     D+  A  +LA A       K  ++ +TG+ GKTT
Sbjct: 61  ALAAIVSPAALQKNPPTGEAVVLSAADMTQACAQLAAAFYGYPGQKLKLVGVTGTNGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T  ++   L+    + A +G+       P           F +                 
Sbjct: 121 TTHLIEFLLTKANLSTALMGTLYTRW--PGFEQTAVHTTPFAVDLQQQLAEAVNAGCEFG 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +         +AV + +   HL   + +E+  +AKA +F      G   +
Sbjct: 179 AMEVSSHALAQGRVLGCEFEVAVFSNLTQDHLDYHTDMEDYFAAKALLFSPEYLKGRAII 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + L A   +  + +      + +AD  +             +     ++    
Sbjct: 239 NADDDYGQRLIASLSSERVWSY--SVNNHSADLWMSDLSYEPNGVSGMLHTPKGNVAFRS 296

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G +  +N+L  +G V  L  D+     A+  F    GR +R +    Q    ++D +
Sbjct: 297 PLVGQYNLENLLAAVGAVLHLGLDLQLVAAAIPEFPGVPGRMERVQINPEQEISVIVDYA 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +        ++L    P   G+ I V G     G+  ++    + ++ +      V 
Sbjct: 357 HTPDSLE-----NLLKAARPFIPGKMICVFG---CGGDRDRTKRPKMGKIAAELADVAVL 408

Query: 406 LSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S          +       +P ++                     GD V++  K 
Sbjct: 409 TSDNPRTEDPERILQDVLAGIPDTVKPTVICDRAIAIRTAILQAQPGDGVLLAGKG 464


>gi|294628854|ref|ZP_06707414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
 gi|292832187|gb|EFF90536.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. e14]
          Length = 506

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/475 (18%), Positives = 153/475 (32%), Gaps = 44/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLGA--AQPDRTADVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAASLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  V+D    + +LA     R       I ITG+ GKTTT  
Sbjct: 75  AVLTDPGGAERAAATGLPVLTVEDPRARMGELAATLYGRPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L + K T              +   R   +                    + +S 
Sbjct: 135 LVEGGLKTAKATGLIGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          +AV T ++P H+   SG+E+   AKA++F    ++    +N DD +
Sbjct: 195 HALVLGRVDGCVFDVAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PARSRLGIVNADDEY 253

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  ++    +    ++    + D   R              + G     V       
Sbjct: 254 GRRLAEEATVPVV----TYSAEGHPDADWRAEDVQVGPMDSTFTVTGPEGVRVSARSPLP 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L A    A  A        G   R         +  + +  +    
Sbjct: 310 GPFNVANTLAAIVALAAAGLDAQTAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
              A  SVL  +    +GR   VLG     G+  ++    +   ++    + V  S    
Sbjct: 366 KTDAVESVLRALRKVTKGRVHVVLG---CGGDRDRTKREPMGAAVARLADTAVLTSDNPR 422

Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               LA+  A+ +            V   E          +    GD V+V  K 
Sbjct: 423 SEDPLAILAAMLQGAASVPAHERGEVLLFEERAAAIAAAVARARPGDTVLVAGKG 477


>gi|108805109|ref|YP_645046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108766352|gb|ABG05234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 512

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 156/482 (32%), Gaps = 54/482 (11%)

Query: 3   PLWTF-------HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           PL T         +L + +       V  G V G++ DSR + P  AF A+ G   DG +
Sbjct: 15  PLATLPGMAVEREELRRVLGVEVPAGV--GRVCGVTHDSREVEPGFAFVAVPGFKRDGVE 72

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           F+  A+++GA LVV   ++         PV  V D   AL  LA A          +  +
Sbjct: 73  FVPEALRRGAALVVAEREVPE------APVAVVPDARAALAALACAFHGHPSRRMEVYGV 126

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------- 165
           TG+ GKTTT   L   L+       C       +                          
Sbjct: 127 TGTNGKTTTCYALHAVLAGAFGEERCGLMTTAEVVAGGERRPAVRTTPEATEVQAALAGM 186

Query: 166 --------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                    + +S  G        +R   AV T ++  HL     +EE    K  +F   
Sbjct: 187 RERGVERVAMEVSSHGIALRRVEGIRFAGAVFTNLSRDHLDLHGTMEEYYRTKRRLFLWA 246

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G    N DD++   L  +   +      +FG +  AD+++   +     +   ++  
Sbjct: 247 R--GPKLSNADDAWGRRLAGEVEGVR-----TFGSAVGADYRIEGVRPSGAGTRFVLRRG 299

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +++ +     G +  QN      +   L    +T  +AL       GR   +      G
Sbjct: 300 EEALRIEVPLFGDYNVQNAAGAAALALELGVPGETVARALRGMPQVPGR---FERVGGPG 356

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D ++          +           GR I V G   E     +     +A  L+
Sbjct: 357 FEVIVDYAHTDVGLEAVLRV-AREVARRGRPGRVICVFGAAGERDGAKRPLMGRVASRLA 415

Query: 398 LYNI---SHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              I      +        +   +   +    +              S   +GDVVVV  
Sbjct: 416 DRGIITTDDAYS--EDPEKIAREVAAGVEDGRLEIVLDRREAIRRALSEAGEGDVVVVAG 473

Query: 450 KS 451
           K 
Sbjct: 474 KG 475


>gi|332654101|ref|ZP_08419845.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332517187|gb|EGJ46792.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 495

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 134/482 (27%), Gaps = 59/482 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    LL  +            +  IS D+R++ P   F A+ G   DG  +I  A
Sbjct: 1   MK-LW---QLLAGVPLTGEPYSQDMEITSISYDTRTLLPGALFVALPGAKTDGSLYIDEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + KGA  VV                F   D   AL  LA          +  I  +    
Sbjct: 57  LAKGAAAVVCRRRPQREGV-----FFTTPDPRRALALLAENWFGHPGREMTLIGVTGTNG 111

Query: 121 ------TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-------------RMPVDVD 161
                   KEML  AL +       I +      +P                        
Sbjct: 112 KTTTTFLIKEMLEGALKTQVGLIGTIQNMVGERVLPAHRTTPESYEVQQLLREMADSGCT 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+  SH      +   +   +A  T +   HL     +EE  SAK  +F    +  
Sbjct: 172 HVVMEV-SSHALVQHRV-EGLDFSVAAFTNLTQDHLDYHHTMEEYRSAKERLFHQCRRAV 229

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +    ++         L             AD   +  +    Q   E   + +  
Sbjct: 230 LNLDDEAGRWYRE------RLACPVFTYSENKDQADLTAKGIRLYPGQVEFEAVAREQIQ 283

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G     N L  L +   L   +     AL      +GR            +T+
Sbjct: 284 RVFLPIPGGFTIYNALCALSVGLCLGLRLSECAAALRSARGVKGR---VEVVPVPTAYTV 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +    S  A  ++L        GR I + G     G         +   +     
Sbjct: 341 LIDYAH----SPNALENILLTARDFTAGRLICLFG----CGGDRDRTKRPIMGDVVKELA 392

Query: 402 SHVWLSGFHVL------ALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               ++  +         ++D L         +H          +  S    GDV+V+  
Sbjct: 393 DLAVVTSDNPRTEDPEDIIRDILAGMEGEGAQIHVEPDRRQAIAWALSQGRPGDVIVLAG 452

Query: 450 KS 451
           K 
Sbjct: 453 KG 454


>gi|313884955|ref|ZP_07818707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619646|gb|EFR31083.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 497

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 81/478 (16%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 8   HDLLQAI-QGHSI-GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            +L++A+        I     V  +  DSR +     F AIKG ++DGH  I   V +GA
Sbjct: 6   KELIEALYNKKLFDQIDLDQTVTKLVNDSRQVEAGACFIAIKGENFDGHQAIAEVVAQGA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            L++V   + A+  ++      VD    A   LA         K  ++A+TG+ GKTTT 
Sbjct: 66  KLIIVEQ-LPANYQTIPANFVLVDSSFRAQAILANKFYQEPSRKLKVVAVTGTNGKTTTS 124

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-------RMPVDVDFGIFEL 167
            M++  L+S+      IG+ +              P  L         +       + E 
Sbjct: 125 SMISDLLTSLDHKTGKIGTLHYKVADTYYPAVNTTPNALHLQALFAEMLERGCQDAVIE- 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224
             S                A+ T +   HL     ++  A AK             G   
Sbjct: 184 -ASSHALSLGRLWYTDVDCAIFTNLTREHLDFHKTMDNYAYAKSLLFSQLGQAFHQGRPR 242

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           L   +      +  + A     +      + A     + +        ++    +  E+ 
Sbjct: 243 LAIINKDDPYWEVMAQATAADLVTYSLVDEEATAYASQIQNKETGLAFKLHFNDQVFELE 302

Query: 285 HHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               G++   N L   L +      DV   ++A   F    GR +      +        
Sbjct: 303 LPMRGHYNVSNYLAAFLCLACYYEIDVANILRATKDFKGVSGRMEVLALNKDFDVVVDFA 362

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A          V+ ++  H +GR   +L  M   G    S        +      +
Sbjct: 363 HTSDA-------LERVMQELVSHKQGR---LLALMGHSGGNRDSGARPGIGDVLFNYADY 412

Query: 404 VWLSGFHVL-----ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +        +   +            E      + +      GDV++   K 
Sbjct: 413 IVFTADNPRFEDVTKICHEMIGQHDEKPYTIVEDRKAAVITMLEMAQSGDVLLFAGKG 470


>gi|312149556|gb|ADQ29627.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Borrelia burgdorferi N40]
          Length = 508

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 142/475 (29%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          + G++  S+ + P+  FFA+ G H+DGHDFI  A+Q+G+ +
Sbjct: 14  QDLIKCVKGSL-----DLEILGVTYSSKLVLPRFVFFALPGIHFDGHDFIEIAIQRGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     S  +    VDD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDL--DFYSSDVTYIKVDDFNIRKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFGI 164
             + +           I +     G                          +  +  + I
Sbjct: 127 YYIYLLFKKKGVKVGFISTVFFDDGSGSLIKNPYRQSTPESTEIHSFLSTMVKNEAQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V     V T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAVVFTNIGHEHLEFHGTIQNYLNVKLGLFRSVSDDAGF- 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   + L +      +K  +++    +       +      S            + 
Sbjct: 246 ---GVINLDDLYSSDFKNAVKKSFTYSLKSSKADFFVSFIDEKTDSTRFEFYHKGVKYLA 302

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           +  +        +M   I+     ++D       +   K   G+     L Q F  +ID 
Sbjct: 303 NVSLLGSFNVENVMAALILVSQILNIDIQDIVDKLNCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   ++      +
Sbjct: 363 AHTPGAFS-----KLFPIFKRFATNRLISVFGSAGE----RDVEKRFLQGQIADIYSDLI 413

Query: 405 WLSGFH---------VLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +     +  + +            S    GD+V
Sbjct: 414 ILCDEDPRGENSMCIIKDIAKGIVNKVENKDLFFIADRKQAIEKAISLAKAGDLV 468


>gi|328676586|gb|AEB27456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella cf. novicida Fx1]
          Length = 487

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/474 (12%), Positives = 136/474 (28%), Gaps = 49/474 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIESLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSQEFEDQK----RVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +          +    + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPNLRESTHTTLDILSLYQTISYYKNYRNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    + +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNMTQAPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G         +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDISKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            ++          +  + +    F   +   GD++++  K 
Sbjct: 398 DNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|260775371|ref|ZP_05884268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608552|gb|EEX34717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 494

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 145/480 (30%), Gaps = 43/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL      S  +     +  + +DSR I     F AIKG   DG  FI  A
Sbjct: 1   MSKELTLTHLLAPWVSLSHQVCNDVAIQRLELDSRKIKTGSTFVAIKGHTVDGRQFIHAA 60

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +Q+GA  ++         G +    S+ V  + D+   L++LA   +  S   +IA+TG+
Sbjct: 61  IQQGANAIIAEAGEQNVHGKVEQLGSVSVVYIADLSQKLSQLASRLQPLSYNQLIAVTGT 120

Query: 117 VGKTTTKEMLTIA-------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            GKTT  +++                  +                + +      ++    
Sbjct: 121 NGKTTITQLIAQWLELSGQRAAVLGTTGNGFLESLTPALNTTGNALEIQQTLSELEDQGA 180

Query: 164 IF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +  + +S  G ++     +   + V + ++  HL     +EE A AK  +F   +    
Sbjct: 181 QYTAMEISSHGLVQNRVKALSFSVGVFSNLSRDHLDYHGTMEEYARAKLSLFTVHDCAKA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      +           +              + +       +    Q     
Sbjct: 241 VINIDDTVGASWV---ELLDNCIPVSLSPIQTGKGVFATQVQYSEAGITLSFSGQYGEGR 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+++    +  L  D    +++ S   P  GR + +            
Sbjct: 298 FTVPLIGEFNASNVMVAFATLLSLGIDKQILVESASQLKPVLGRMELFHAQGKAKVVVDY 357

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  GR  A+ G     G    +    +   +      
Sbjct: 358 AHTPDA-------LEKALLALKVHCNGRLWAIFG----CGGDRDTGKRPMMASIGEKLAD 406

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   +    +           +         D++++  K 
Sbjct: 407 VVILTDDNPRSESPSAIVKDMLAGMASPENAIVEHDRYNALVHALKHSSGDDIILIAGKG 466


>gi|298492553|ref|YP_003722730.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
 gi|298234471|gb|ADI65607.1| UDP-N-acetylmuramyl-tripeptide synthetase ['Nostoc azollae' 0708]
          Length = 494

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 83/476 (17%), Positives = 162/476 (34%), Gaps = 41/476 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL A+ G          V+GI  +S      + F  I G   DG +F   A+  G
Sbjct: 1   MKLRELLAAVDGVEYPKTGDVEVDGIKTNSDDCGAGDLFIGIPGTRVDGGEFWQSALASG 60

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           A   +V+ + V          V    ++  A  +++ A       +  ++ +TG+ GKTT
Sbjct: 61  AVAAIVSPEAVQKNPPTPESLVISASNMNKACAQISAAFYGYPGQQLRMLGVTGTNGKTT 120

Query: 122 TKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIF 165
           T  ++   L+ +           T     S       P  +         +    +FG+ 
Sbjct: 121 TTHLIEYFLTKVNLPAALLGTLYTRWPGFSQTAAFTTPFAVDLQQRLAQAVDAGCEFGVM 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH      +       +AV T +   HL     +E+   AKA +F      G   +
Sbjct: 181 EV-SSHALAQDRVFGCP-FEVAVFTNLTQDHLDYHQDMEDYFGAKALLFSPDYLQGRAII 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + L   +     +       + +AD ++             +      +    
Sbjct: 239 NADDEYGQRL--ITGLSKERVWTYSVNNHHADLRMSDLNYQPIGVSGILHTPKGDVAFSS 296

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G +  +N+L  +  V  L  D+     A+S F    GR +R + + N+    ++D +
Sbjct: 297 PLVGQYNLENLLAAVAAVLHLGLDLQLVANAISKFTGVPGRMERVQISHNKDVSVIVDYA 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +        ++L  +     GR I V G     G+  ++    + ++ +      V 
Sbjct: 357 HTPDSLG-----NLLKSVRAFIPGRIICVFG---CGGDRDRTKRPKMGKIAAELADIAVV 408

Query: 406 LSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S           +  +   +P ++                     GD V++  K 
Sbjct: 409 TSDNPRTEDPERIIEDILAGIPDTLQPMVICDRATAIRAAILEAKPGDGVLLAGKG 464


>gi|304396558|ref|ZP_07378439.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
 gi|304356067|gb|EFM20433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. aB]
          Length = 495

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 137/479 (28%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----GPWVPGAPARPLRDMTLDSRIAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV   +  A+ G +     +PV  +  +   L+ LA     +       I  +     
Sbjct: 61  AAVVAEAEGEAADGEIREMHGVPVIYLAQLPQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
           T     +A  +               G+   L+         +                 
Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLSAAENTTGSAVDVQHLLNDLAEKGASLT 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     + +   +   +     + G   L
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDM-QSYESAKWLLFSEHQVGQAIL 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--KQCSEQSWMEVQLQGKSMEV 283
           N DD       A+       T+ +  +       L+    +     + +       + E+
Sbjct: 240 NADDEVGRRWLARLPDAVAVTMENNLQPGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEI 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+++ L  +  L   + T I       P  GR + +  A          
Sbjct: 300 NSPLMGAFNVSNLMLALATLLSLDYPLATLINVAPQLQPVNGRMEVFSAAGKPTVVVDYA 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L     H +G+   + G     G         L   ++      
Sbjct: 360 HTPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQYADV 408

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   L                          D+V+V  K 
Sbjct: 409 VVITDDNPRSEDPQAIVNDILTGLLDPGRARLVSGRAQAVTNTIMQAQPDDIVLVAGKG 467


>gi|332295503|ref|YP_004437426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178606|gb|AEE14295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Thermodesulfobium narugense DSM 14796]
          Length = 487

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/484 (16%), Positives = 151/484 (31%), Gaps = 60/484 (12%)

Query: 5   WTFHDL-------LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
            T  +L       ++ I+ H  G      V GIS +S+ I     FFAIKG   DGH+FI
Sbjct: 1   MTVKELFDKSNIRIEDIKEHYPGEFFNSQVAGISYNSKEIKKGYLFFAIKGNRIDGHEFI 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITG 115
             A +  A   VV  D+        +    V   L AL + ++         +   ++TG
Sbjct: 61  QEAFKNKAIGAVVEKDVDY------VNTIKVRSTLQALRETSLVFYDYPFKKLFLGSVTG 114

Query: 116 SVGKTTTKEMLTIALSS----------IKKTYACIGSYNNHIGVP-----LTLARMPVDV 160
           + GK+T   +L+ A++           +   +A           P       L    + +
Sbjct: 115 TNGKSTITWILSHAVNKLLGKSFALGTLGWMHAGKIIRKTSNTTPESKDICELLDQAIQL 174

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D     L +S         H ++   A+ T +A  H+     +E+    K  +F      
Sbjct: 175 DMKYGFLEVSSHALKLGRLHGIQFDAALFTNLARDHMDFHPSVEDYFETKKSLFTSTYLK 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              F+  +      +    + +      SF           K++       + V+ Q   
Sbjct: 235 ENAFVVINIDDLYGI-NLYNGIKDFRKASFSLENEKASFFGKFEPVDRGVCLLVEGQKVF 293

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G   A N+L     + ++  + D    A        GR     C   + F  
Sbjct: 294 AP----IYGRFNASNLLGAYTFLRMMGIEKDKLGDAFVDLVAPYGR---LECVQTKPFKI 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID ++  +         VL  +    E + I V G     G         +   ++   
Sbjct: 347 WIDYAHTPDGLE-----KVLKSLRDMVEKKIILVFGA----GGNRDKGKRPIMGRIAAQF 397

Query: 401 ISHVWLSGFHVLA-----LKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  ++  +        + D +       ++ +                   D D +++
Sbjct: 398 SDYTIITSDNPRYEDPMSIIDEIKSGFLSVKNSNFEILSDRREAIKRAIEIARDNDAIII 457

Query: 450 --KS 451
             K 
Sbjct: 458 AGKG 461


>gi|123968000|ref|YP_001008858.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. AS9601]
 gi|123198110|gb|ABM69751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. AS9601]
          Length = 511

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/482 (16%), Positives = 145/482 (30%), Gaps = 44/482 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSSNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++       IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGPAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVD--------VDFGIFE 166
             +L   L  + K             G             ++            +F I E
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQNKLNAALEAESEFAILE 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTI 223
           +  S     +          A+ T +   HL     +E     K          EK G  
Sbjct: 186 V--SSHSIAQNRISGCEFEAAIFTNLTQDHLDYHPDMESYFQTKRKLFFPPYLKEKDGIC 243

Query: 224 FLNYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            LN+DD +   L     K   L    I       +  F +   K     S        + 
Sbjct: 244 VLNHDDHWISKLSSDLKKRSLLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREK 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +++    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +
Sbjct: 304 IQLFVPLVGEFNLMNTIQAITILYKLNFSLKDLSKIIQSFPGAPGRMEKIQIDDNDVSRS 363

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L     +           VL  I    EG+ I V G     G         L   ++   
Sbjct: 364 LPTVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEEL 418

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              ++++  +            +   + +   +                    D+V++  
Sbjct: 419 SDQLFITSDNPRTEEPQKIVNDILMGIKKREKIIIEIDRFKAINESIQFANKKDIVLIAG 478

Query: 450 KS 451
           K 
Sbjct: 479 KG 480


>gi|260767162|ref|ZP_05876105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
 gi|260617836|gb|EEX43012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio furnissii CIP 102972]
          Length = 495

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 159/480 (33%), Gaps = 45/480 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           + T   L Q I        P      V  + +DSR I   + F AI G   DG  FI  A
Sbjct: 1   MNTSKALQQLISPWLTISAPSLAALTVTHLELDSRHIQAGDTFVAIIGHATDGRRFIDKA 60

Query: 61  VQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA LV+          +     ++PV  ++ +   L++LA          +IA+TG+
Sbjct: 61  ITQGANLVLAQACPQHPHGSVEERHAVPVVYLEQLDKHLSELAGRLYGGHHNHVIAVTGT 120

Query: 117 VGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166
            GKTT  +++   +                + +H+          V+V   +FE      
Sbjct: 121 NGKTTISQLIAQWIDLLGHRAAVMGTTGNGFLSHLQPAANTTGNAVEVQSTLFELAQQGA 180

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V     V + ++  HL     ++  A AK  +F   E    
Sbjct: 181 EYTAMEVSSHGLVQGRVKCVPFDAGVFSNLSRDHLDYHGTMDAYADAKLSLFTEHETRQA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D+      +   HA+G+        +        +         ++V     + +
Sbjct: 241 IINVDDEVGARWAQQLQHAVGVSLNA--KPNAEQALWAVQVSYAESGITIDVDGSWGAGQ 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+++ L  +  L  ++D  + A     P  GR + ++           
Sbjct: 299 LRAPLIGEFNASNLMLALATLLSLGFELDALLAAAPQLQPVLGRMELFQAPGKAKVVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H +G+  A+ G     G    +    +   ++     
Sbjct: 359 AHTPDA-------LEKALRALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIAEAFAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L    H               S   + D++++  K 
Sbjct: 408 RVILTDDNPRSEDPQAIVNDMLAGLKTPQHASVEHNRFDALRTALSQAGEQDIILLAGKG 467


>gi|167043607|gb|ABZ08301.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 48/459 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
               Q   + + IDSR +   + F A+KG + DGH FI  AV  GA  +V  +    +  
Sbjct: 20  SASAQSSFDRLVIDSRDVGSSDCFVALKGTNVDGHLFIDKAVLNGAIAIVCESGPAVAGP 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
            +++    V D   AL +LA        SK  + A+TG+ GKTT   ++   L +     
Sbjct: 80  DIAL----VKDSRRALAELASLMESDPASKLKVFAVTGTNGKTTVATLVAHVLDANNHKS 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVR 183
             IG+     G     A         ++E              + +S     +    +  
Sbjct: 136 GFIGTTGYRDGTHFYEAVRTTPSTVRVYELLGQMLASGCSHCSMELSSHAIDQDRIRMRD 195

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A+ T +   HL   S  E   +AK ++F+ L       +N DD   + + A +    
Sbjct: 196 VDVALFTNLTRDHLDYHSTFELYFAAKKKLFDELPDGAVAVVNVDDPRGKGIAADTTGSV 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    +FG   ++D              + +    +  ++       ++A     +  + 
Sbjct: 256 I----TFGSDDHSDVSFSIEGNELSGLDLTIDGHRRRFQLAGTYNASNLAAAYAASRALG 311

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    +I ALS   P EGR +R +        T++   Y   P ++K  +    + 
Sbjct: 312 LSAL----ESIDALSSSPPVEGRFERMQFEGG----TMVIVDYAHTPDALKNVLEATLE- 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           S         + G     G             ++      V ++  +            +
Sbjct: 363 SMRPGSTLWCIFG----CGGDRDPGKRAQMGAIAERLAHKVIVTSDNPRTEDPKLILDDI 418

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  L +     +            +S+V GD +V+  K 
Sbjct: 419 RQGLLKPEDAFWEIDRRDAISRAAASMVSGDTLVLAGKG 457


>gi|220930918|ref|YP_002507826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
 gi|219992228|gb|ACL68831.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Halothermothrix orenii H 168]
          Length = 480

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 90/464 (19%), Positives = 151/464 (32%), Gaps = 43/464 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              I+ DSR + P  AF AI G   DGH+FI  A+ KGA ++    ++        IP+ 
Sbjct: 12  FTDITCDSREVKPGYAFVAITGFKNDGHNFIEEAINKGASVIFTEKEI---KSRSGIPIV 68

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D    L KLA         K  +I +TG+ GKTTT  ++   L+   K    IG+  
Sbjct: 69  RVKDSRSILGKLAAEFYNYPSRKLKLIGVTGTNGKTTTTHLIYHLLNYKGKNSGLIGTVK 128

Query: 145 NHIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              G       +               V  +     + +S  G         +  I V T
Sbjct: 129 VDTGKRTIPGNLTTPEPVTLQKYLDEMVKHNLNYACMEVSSHGIKLKRITGSQFAIKVGT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KAKSHALGIKT 246
            I   H    S   +    K    E       + LN DD +        K +        
Sbjct: 189 NITVDHFDLHSDFSDYVQVKKSFLEDKNPHTLVLLNNDDHYLSSFGNIAKNQIGYGITTN 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                ++ N       +     +S    Q        V   +      N+   L  ++I 
Sbjct: 249 TDITAENINYSGITTDFVYSLNKSIKTSQGNKIGPMKVPINLKIPGEHNIYNALVAITIG 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                T  K    F    G  +R++   N+ F  + D ++N    S  A    +SQ+   
Sbjct: 309 LYYGLTPEKIQDFFGQFRGIWRRFQVIYNKDFAIIDDCAHNPG--SYGAVFKTVSQLKYK 366

Query: 367 GEGRRIAVLGDMCEM---------GELSQSFHIDLAEVLSLYNISHVW-----LSGFHVL 412
                 A+ G+             G+  + FH      L   N + V      +S     
Sbjct: 367 NLLIVNAIRGNRGAQINKGNAETIGKWLKKFHNY---YLLTTNCNDVVKPIDKVSPEEEK 423

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
               AL   +I   + + +      +   +   D++++  +++ 
Sbjct: 424 VFLQALDKNNIKYSHLDQLKPALKNVLDKVTPDDIILLLGAHAM 467


>gi|290961151|ref|YP_003492333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
 gi|260650677|emb|CBG73793.1| putativeUDP-N-acetylmuramoyl-L-alanyl-D-glutama
           te--2,6-diaminopimelateligase [Streptomyces scabiei
           87.22]
          Length = 555

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 44/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL   +     G      V GI+ DSR++ P + + A+ G    G DF   A   GA
Sbjct: 65  SLADLAGQLGAEQPGSA--AEVTGITHDSRAVRPGDLYAALPGARLHGADFADQAAGLGA 122

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             V+ +        +  +P   VDD    + +LA     R       I ITG+ GKTTT 
Sbjct: 123 VAVLTDPSGAERAAAAGLPALVVDDPRARMGELAATIYGRPGRDLLQIGITGTSGKTTTA 182

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMS 170
            ++   L +++ T              +   R   +                    + +S
Sbjct: 183 YLVEGGLRTVRSTGLIGTVEMRVGDERIKSERTTPEATDLQALFAVMRERGVDSVVMEVS 242

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +          +AV   ++P H+   SG+E+   AKA++      T         +
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPERSRLGVVN 297

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +    +        + +F    + D   R              + G   E +      
Sbjct: 298 LDDEYGRRLVDEATVPVVTFSAEGHPDADWRAEDVRVGPLDSTFTVVGPKGERISARSPL 357

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             + N+  TL  V+ L         A        G   R         +  + +  +   
Sbjct: 358 PGSFNVANTLAAVAALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
               A  SVL  +    EGR   VLG     G+   +    +   ++  + + V  S   
Sbjct: 415 -KTDAVESVLKALRKVTEGRLHIVLG---CGGDRDTTKRAPMGAAMARLSDTAVLTSDNP 470

Query: 409 --FHVLAL-------KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                LA+         ++P          E          +    GD V+V  K 
Sbjct: 471 RSEDPLAILATMLEGAASVPAHERGEVLLFEDRAAAIAATVARARPGDTVLVAGKG 526


>gi|85714968|ref|ZP_01045953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
 gi|85698165|gb|EAQ36037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter sp. Nb-311A]
          Length = 485

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/450 (14%), Positives = 132/450 (29%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G++ DSR++   + FFA+ G   DG  FI  A+  GA  +V       +  +  +
Sbjct: 19  ELAVTGLAADSRAVKLGDLFFALAGTKTDGARFIDAAIASGAVAIVGEH----APATGRV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------- 136
           P     +   AL   A     R  ATI A+TG+ GKT+           +          
Sbjct: 75  PFIATPNPRRALALAAARFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134

Query: 137 -YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVI 189
                               +  ++D    E      L  S  G  ++    VR   A  
Sbjct: 135 GVVTPSRTVYGSVTTPDPIELHRELDQLAGEGVTHLALEASSHGLDQYRLDGVRVRAAGF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  H+     +      K  +F  L +   I +   D        ++       +  
Sbjct: 195 TNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGIAVISTDHDCSHTVIEAANARKVRVMR 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+  +      +  + + + + +      +       +       +   L    ++   
Sbjct: 255 VGRRSDGALAGIRLVEAAIEDFAQRVTLEHAGRERVIRLPLVGEFQIENALVSAGLVIGT 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +  +     EG   R           +  +  +       A    L  + P+ + 
Sbjct: 315 GSDPDQVFAALEHLEGARGRLELVGEHNGAPVFVDYAH----KPDALAKALLALRPYAKR 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIH 423
           + + V G     G    +    L   ++  N   V ++  +  +          L  +  
Sbjct: 371 KLVVVFGA----GGDRDAGKRPLMGAIAADNADVVIVTDDNPRSEDPAAIRAAILAAARG 426

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          + L  GD +++  K 
Sbjct: 427 ACEIGDRAEAIRGAIAGLQPGDALLIAGKG 456


>gi|189347975|ref|YP_001944504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
 gi|189342122|gb|ACD91525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chlorobium limicola DSM
           245]
          Length = 520

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 146/477 (30%), Gaps = 41/477 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +++ +    +         +  ++ DSR + P   F AI+G  +DGH +I  AV+ G
Sbjct: 16  LSAIVRELDVLEMAGTEDAERMIVSLAADSREVLPGSLFVAIRGFAFDGHRYISEAVRSG 75

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+     +            V D   AL   A A    +   I  I +TG+ GKTTT
Sbjct: 76  AAAVICEA--LPEDNGSGAVYIRVADSRRALAAAARAFYRNASERIFLIGVTGTNGKTTT 133

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFE 166
             ++   L+S                    +     P            +       + E
Sbjct: 134 ARLIADMLNSCGIPAGYIGTNLCRIAGRDISLDRTTPEAHELQALFRRMLDAGCQAAVME 193

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH   +  +   +R   AV T ++  HL     +   A AK  +F+ L+  G    N
Sbjct: 194 V-SSHALVLDRV-SGLRFRCAVFTNLSMEHLDFHQTMAGYADAKQILFDQLDPEGFAVFN 251

Query: 227 YDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD +   + ++  A            +      +       S               V 
Sbjct: 252 IDDPYASQMASRVAADKRFCCTLKPQRELTLRCGRSFSAAVSSRTLGSASVELHFPDAVH 311

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N++  L   ++L+          +V         R     +         
Sbjct: 312 TVQTELPGMYNVMNLLEAAAVLSGMGIAPGHVAAVLGKPFRVEGRMERIWDTEKSRCAFV 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++ A+S L ++        + V G     G             ++      V
Sbjct: 372 DYAHTPDALEKALSALGELKSSDAR-LVVVFG----CGGNRDRLKRPEMGRIASEKADFV 426

Query: 405 WLS-----GFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +L+       +   + D +       +       +       ++L+ GD+++V  K 
Sbjct: 427 FLTSDNPRDENPEFILDEIECGMEGSNYRRITGREEAIREAAATLLPGDILLVAGKG 483


>gi|317129302|ref|YP_004095584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474250|gb|ADU30853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 491

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 82/457 (17%), Positives = 154/457 (33%), Gaps = 46/457 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  + +DSR +     FF I G   DGHDF   A++KG   +V   D+     ++++
Sbjct: 23  DQSITDLHMDSREVTQGSLFFCISGYTVDGHDFATQAIEKGTVAIVAEKDL-----NVAV 77

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V     A+  ++ A      SK  +I +TG+ GKTTT  ++   L   +K    IG
Sbjct: 78  PVIKVTSSKRAMAIISSAFYDYPSSKLHLIGVTGTNGKTTTTHLIEKILRDAEKNTGIIG 137

Query: 142 SYNNHI--------GVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
           +                     +       + E      + +S         H    ++A
Sbjct: 138 TMYMKYKDKEVAVNNTTPESLVLQKGFSTMVQEGVNVVTMEVSSHALELGRVHGTHFNVA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V T ++  HL     +E  A AK       G + +         +  +        +   
Sbjct: 198 VFTNLSQDHLDFHETMENYARAKGLLFAQLGNQFSDKSQPVAVLNRDDDTFDLLETMTAA 257

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I S+G   NAD +  K +   E +   + +  +S  V     G     N L       +
Sbjct: 258 PIISYGIKGNADLKASKIQLHEEGTSFNMSISNESCSVSMKMAGTFSVYNALAAAAAAYV 317

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +    ++LS      GR +R     +         + ++         +VL  I  
Sbjct: 318 SGIPLQAIGESLSNMDGVAGRFERVELEEDFHVIVDYAHTPDS-------LKNVLETIKE 370

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKD 416
             +G+   V+G     G             ++      V+L+  +            ++ 
Sbjct: 371 FAKGKVSVVVG----CGGDRDKTKRPKMAAIAEELSDFVYLTSDNPRSEDPVSILKDMES 426

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S +    E  D ++  I+      +V+++  K 
Sbjct: 427 GMKGSSYKVIVERRDAIYEAIRQ-AKKDEVILIAGKG 462


>gi|255536594|ref|YP_003096965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
 gi|255342790|gb|ACU08903.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Flavobacteriaceae bacterium 3519-10]
          Length = 488

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 93/479 (19%), Positives = 157/479 (32%), Gaps = 48/479 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       DL++ +Q   I       ++ I  DSR       + A+KG   DGH FI  A
Sbjct: 1   MI--MNLEDLIKKVQILDILGDRNRDISAIVSDSRKAVAGSLYVAVKGTVADGHSFIDAA 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           V +GA  VV N           I    V+D   AL +LA         K  +I ITG+ G
Sbjct: 59  VAQGAAAVVCNA--FPENIDTDITYIKVEDSAKALGQLASGFFGNPSEKLNLIGITGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGI 164
           KT+   +L      +    A I +                P  +         V+     
Sbjct: 117 KTSVTTILYDLFKYLGFKSALISTVEYRIADKVLPSTHTTPDVITLNKILAEAVEAGCEY 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G  +  T  +   IA  T I+  HL       E    K   F+GL       
Sbjct: 177 AFMEVSSHGIHQKRTERLHFKIAGFTNISHDHLDYHKTFSEYLKTKQSFFDGLNPDAVAI 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD   +++   + A    T  S+     AD+  +  +       +    +     + 
Sbjct: 237 TNLDDKNGKIMLQNTKA----TRKSYALKTMADYHGKTTETDFNGMLLNFDGKEFWTTLT 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N+L+   I        D  +KA+S+    +GR +  +      F      
Sbjct: 293 ----GRFNVYNLLLAYAIALECGFHSDDVLKAISLLKRVKGRFETLKSDGGIFFVID--- 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++   +  +++I    E     V G     GE  Q+   ++ ++ +  +   +
Sbjct: 346 -YAHTPDALDNILDSINEIRTKNERLIT-VFG---CGGERDQTKRPEMGKISTRKSTLTI 400

Query: 405 WLS--------GFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
             S        G  +  ++  +    +  Y                    D+V+V  K 
Sbjct: 401 ITSDNPRSENPGDIIKEIEAGVEPQYYSKYTSIPDRRDAIKMAIKFAEPKDIVLVAGKG 459


>gi|157825984|ref|YP_001493704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
 gi|157799942|gb|ABV75196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia akari str. Hartford]
          Length = 480

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 50/456 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V G+SI+S+++   + FF +KG + D +DFI  A+ +   LV+ +    A+I      +
Sbjct: 13  KVKGLSINSKTVKENDVFFVLKGQNVDVNDFINDALNQAVALVITDNKKSATID----KI 68

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL--------------S 131
             V+DV  AL +       +    +IA+TG+ GK++    +                   
Sbjct: 69  IYVEDVQAALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGV 128

Query: 132 SIKKTYACIGSYNNHIGVPLTLAR------MPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            I      I        +     R         ++++  FE   S  G  +     ++ +
Sbjct: 129 EIFGCDNLINDVTELTTLDYLSFRKIAHNLAENNIEYLAFE--ASSHGLNQARLGEIKVN 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA  T+ +  HL      E    AK ++F      G + +   D                
Sbjct: 187 IACFTSFSQDHLDYHYTKENYLLAKLKLFTEHLLQGGLAILNSDIEEIEFIKDYLLNHNI 246

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + GK    D Q+ K     +   +      +        IG   A N+L+    +  
Sbjct: 247 KFITVGK--KGDVQITKINGSLKGQNISFAFNNRECSFNTSIIGSFQASNLLIAALSIHY 304

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +  D +  ++ L+   P +GR +R         ++   ++       +K           
Sbjct: 305 IGCDFNKIVEILTQVKPVKGRMERIDNTNIFVDYSHTPDALEKALTELKNI--------K 356

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
             + + I V G     G         L   ++      V ++  +           + + 
Sbjct: 357 LRDSKLIVVFG----CGGNRDKTKRSLMGQIAAKLADTVIITDDNPRHEDPKLIRAEIIS 412

Query: 420 RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                 Y E    +    +  ++L   D++++  K 
Sbjct: 413 CIEKADYMEIANREEAIKYGINNLKQDDILLIAGKG 448


>gi|297561921|ref|YP_003680895.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846369|gb|ADH68389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 491

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 151/484 (31%), Gaps = 54/484 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               +LL       +       +  G  +D+  + P   + A+ G    G + +  A+ +
Sbjct: 1   MKLSELLYGHDHQVLHGDQDTPITSGPCLDADRVTPGSLYVALPGHRAGGPEALGEALAR 60

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           GA  V+V     A          V  V D   A   ++            ++A+TG+ GK
Sbjct: 61  GAAAVLVEGPDPAGHRPADTGACVVRVPDARIATALVSARYHGEPGRAMDVVAVTGTNGK 120

Query: 120 TTTKEMLTI--ALSSIKKTYACIGSYNNHIGVPLTLARMPVDV----------------- 160
           T+   M      LS   +      S     G P+ + R  +                   
Sbjct: 121 TSVSSMYESLLTLSEGARVGVIGTSGARVGGAPIPMPRSVLSTPESPDLQYLLACMRDRG 180

Query: 161 -DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + E   + +G +          + V T +   HL +   +E    AK  +F+G   
Sbjct: 181 GDSVVLE--ATSMGLLNHRVDGSFVDVGVFTNLTQDHLDDHGTMESYTRAKMLLFQG--- 235

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +      +  + + A   AL    + ++    +AD++       S  +   +   G+
Sbjct: 236 ---MCRRAVVNADDPVGAAIPALMPGAVTTYAVDADADYRATDLVVDSSGTRFVLHHDGR 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G     N L  +    +L  D+D  + AL       GR + +         
Sbjct: 293 KYPAAIPVPGRFSVSNALAAVAACHVLGHDLDALVDALDRMPQIPGRFEHFGTPEGVSVI 352

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y  +P S+   +  +   +P        VL      G+   +    + E+ + Y
Sbjct: 353 VD----YAHSPDSLDKVLCTIRGFAPRR------VLTVFGCGGDRDTTKRARMGEIAATY 402

Query: 400 NISHVWLSG----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV- 449
           +   V  S         A+ D +   I              G      SS   GDVV+V 
Sbjct: 403 SDLCVLTSDNPRYEDPEAIMDQVAPGIEAVGTPFARVGDRRGAIALALSSAEPGDVVLVA 462

Query: 450 -KSS 452
            K S
Sbjct: 463 GKGS 466


>gi|118497119|ref|YP_898169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Francisella tularensis subsp. novicida U112]
 gi|194323416|ref|ZP_03057193.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118423025|gb|ABK89415.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella novicida U112]
 gi|194322271|gb|EDX19752.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 479

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       ++ + +DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIKTLSQN-NFQIDSLYLDSRKCDKKSAFVALKGLSTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTT 122
           G  LV+ ++            VF + ++   L+ LA       K   II ITG+ GKT+ 
Sbjct: 60  GVSLVLTDSHQFEDQK----CVFYIQNLKEKLSTLAKWFYDYEKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +               + E+ 
Sbjct: 116 SSYIAQFLDLSAQKTLLLGTNGNGIYPDLKESTHTTLDILSLYKTISYYKKYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +     +   +A+ + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDNYFEAKAKL-----FQFKRLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    + +            K K                    +   
Sbjct: 229 VNIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L    P +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLNSYNPNNLWCIFG----CGGNRDTSKRPIMAQIAEEYASKIVITE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +K          +  + +    F   +   GD++++  K 
Sbjct: 398 DNNRFESIENIFDDIKKGFIHPEKHIFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|42526337|ref|NP_971435.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
 gi|81570342|sp|Q73PH4|MURE_TREDE RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|41816449|gb|AAS11316.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Treponema denticola ATCC 35405]
          Length = 532

 Score =  124 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 73/505 (14%), Positives = 141/505 (27%), Gaps = 59/505 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49
           M    +  + ++AI+  +     +  +N +  DSR +               AFFA+ G 
Sbjct: 1   MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 60

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           H DG  FI  A++ GA  +    D+  +     I    V+DV   ++K++         T
Sbjct: 61  HTDGKKFINSAIENGAVCIFYEGDL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 119

Query: 110 --IIAITGSVGKTTTKEMLTI---ALSSIKKTYACIGSYNNHIGVPLTLARMPV------ 158
             +I +TG+ GK++T   +             ++ +    +   +P    +         
Sbjct: 120 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNVVQ 179

Query: 159 ---------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                       + + E     L         V     V   +   HL     IE+    
Sbjct: 180 LRLAQMRDSGCSYAVVEASSHGLSPKTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 239

Query: 210 KAE------IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           KA          G        +NY+D         +              K  +     +
Sbjct: 240 KANLFRALDKNPGKGFPIFGIVNYEDPSAPYFMEATQKNVYPFSTELKDLKKIEEYKGLF 299

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV---SILTADVDTAIKALSVF 320
            +  E+S   ++                    +     I+     +       I  +   
Sbjct: 300 AKDIEESSSGIKFTLCDFSSRKEYGCELKLAGIFNVKNILASVLAVQRITGLDIACIIEK 359

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P     K     +++G    +   Y   P+S       + +      G+ I++ G    
Sbjct: 360 LPLVKPVKGRMMLIDEGQDFEVLIDYAHTPSSFMTIFPSIKERIKKSGGKVISLFGS--- 416

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVH---YSE 428
            GE       +   + +LY+   V L+               +    P            
Sbjct: 417 GGERDVKKRPEQGRIAALYS-DIVILADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIP 475

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                     S     D V++  K 
Sbjct: 476 DRPSAIKKAFSLAGKNDAVLLLGKG 500


>gi|15799769|ref|NP_285781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O157:H7 EDL933]
 gi|12512788|gb|AAG54389.1|AE005185_6 meso-diaminopimelate-adding enzyme [Escherichia coli O157:H7 str.
           EDL933]
          Length = 495

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/478 (13%), Positives = 137/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A+ G +     +PV  +  +   L+ LA          +  +  +     
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
           T     +A  S               G+   +          +                 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|302781769|ref|XP_002972658.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
 gi|300159259|gb|EFJ25879.1| hypothetical protein SELMODRAFT_148635 [Selaginella moellendorffii]
          Length = 532

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 84/496 (16%), Positives = 159/496 (32%), Gaps = 62/496 (12%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   +         ++GI  DSR +   + F    G   DGH F+  A +
Sbjct: 1   MTLTELLDEAKVVPLSVEGDLDVIISGIHHDSRQVNSGDMFVCCIGETSDGHSFVPQAAE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA ++V   ++   IG     V  V D    L+ LA A   R      ++ ITG+ GKT
Sbjct: 61  QGAVVIVATKEV--EIGESVKAVVIVSDTNSILSALAGAFYGRPSESLAVVGITGTNGKT 118

Query: 121 TTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIF 165
           TT  +L     S+            +       +     P       L    V     + 
Sbjct: 119 TTSYLLRSIYESMGLKTGLIGTISYSIHGKHKQDAPHTTPDAVYLQKLMATMVHNRTEVC 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +     +   +AV T +   H+      +    AK ++F  +        
Sbjct: 179 VMEVSSHALAQDRCKEIDFDVAVFTNLTRDHMDYHENEDSYKEAKGKLFASMVDPARHRK 238

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +          S       + +FG  K+AD      +    ++ + V+    ++E+  
Sbjct: 239 VVNIDDPNAGYFVSLGNPKVPVVTFGMEKSADVHPLDIQLTLFETNVLVKTPRGNIEISS 298

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N+L  + +   + A ++  ++ +       GR +       Q F  ++D +
Sbjct: 299 GLLGRHNVYNILAAVSVGIAVDAPLEDIVRGIEEVDSVPGRVELVD--EEQPFAVIVDYA 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +  S      +L  +   G  R I V+G     G         +   ++        
Sbjct: 357 HTPDALS-----RLLDTVRECGPRRIITVVG----CGGDRDRGKRPVMAKIAAAKSEVCI 407

Query: 406 LSGFHVLA------LKDALP----------------------RSIHVHYSETMDGLFLFI 437
            +  +  +      L D L                           V   +         
Sbjct: 408 FTSDNPRSEDPLEILDDMLAGVGWSMDEYLKCGERSYYPPIWNGNRVFVYDLRKIAVRAA 467

Query: 438 QSSLVDGDVVVV--KS 451
            +   +GD VV+  K 
Sbjct: 468 VAMGEEGDAVVIAGKG 483


>gi|120555368|ref|YP_959719.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinobacter aquaeolei
           VT8]
 gi|120325217|gb|ABM19532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter aquaeolei VT8]
          Length = 494

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/458 (16%), Positives = 148/458 (32%), Gaps = 45/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+  DSR + P +AF A+ G       ++  A+  GA  +++ ++          
Sbjct: 21  DVTIHGLKTDSRKVRPGDAFIALAGARTPAEHYMDQAISAGATAILLESEQERQCHERHG 80

Query: 84  PVFG-VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +   V  +   L ++A            +I +TG+ GKT+  + ++  L        C 
Sbjct: 81  ALIVPVVGLRARLGRIADRFFEHPSRHLRVIGVTGTNGKTSVTQYISQLLRE--TGTPCG 138

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184
                  G+P ++          +                  + +S     +     +  
Sbjct: 139 LLGTLGYGMPGSIESATHTTPDVVQVNRVLNRIRNEGGRAAVMEVSSHALDQGRVDNLTM 198

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV T +   HL     +E    AKA +F   E   ++    DD F   L  +      
Sbjct: 199 TGAVFTNLTRDHLDYHGSMEAYGEAKARLFLREELHFSVINF-DDPFGRQLYGQLEGQCD 257

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  YS  +    +  L+++   +      V  Q    ++    +G   A N+L  L  V 
Sbjct: 258 RVRYSLHE-AQTELWLKEFTPTASGFRARVDGQWGEFDLTVPLLGSFNASNVLAALATVL 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   V+ A+  +    P  GR    R   + G   ++D ++  +  +     + L  + 
Sbjct: 317 TLGVPVERAVSVVRELSPPPGR--LERFTGSTGKHVVVDYAHTPDALA-----NALEALR 369

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           PH  GR I V G     G              +     +V ++  +            + 
Sbjct: 370 PHTRGRLICVFG----CGGDRDPGKRPEMAKEAEKRADYVIVTDDNPRTEQPERIVSDIS 425

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               ++                     + D+V++  K 
Sbjct: 426 AGFTQAGRWQVIHDRAQAIAEALGMANEDDLVLIAGKG 463


>gi|320450936|ref|YP_004203032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
 gi|320151105|gb|ADW22483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Thermus scotoductus SA-01]
          Length = 486

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 92/484 (19%), Positives = 154/484 (31%), Gaps = 70/484 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG------PHYDGHDFIL 58
            T  +L            P   V G+++DSR + P   F A+ G         DGHDFI 
Sbjct: 1   MTLEELFAPFGLK----APPLRVLGLTLDSRRVEPGYVFVAVLGVPLPHRKPLDGHDFIP 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGS 116
            A+ KGA  VV   ++     SL +P   V D   AL  LA            ++ ITGS
Sbjct: 57  EALAKGAIAVVGEREL-----SLPVPYLRVGDAREALAHLARHFFGEPDRKLALLGITGS 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---------------- 160
            GK+TT  +L   L + +K  A + +    +G                            
Sbjct: 112 KGKSTTASLLHHLLQAGEKPAALLSTVGLRLGEEARPNIGHFTTPEAPQVYGFLREAVER 171

Query: 161 --DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + E+  SH   ++ +  L       ++     HL      E   +AKA +    E
Sbjct: 172 GLEAAVLEV-SSHALALKRVEGLSYRIGVFVSFYPDDHLDLHGTAEAYFAAKALLV---E 227

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           ++    LN      + L  + H L              +      ++  E     +    
Sbjct: 228 RSHLAVLNTRLPHLKRLLPRPHLL---------FGPGGEVWGEGLREGEEGLRFTLHTPW 278

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            S E     +G +   N L            ++  ++ L+ F    GR         + F
Sbjct: 279 GSGEAFLPMLGRYNLDNALAASAAALAYGLSLERVLQGLATFRGVPGR---MEVVQRKPF 335

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID ++             L  +     GR + V+G     GE       D+  V + 
Sbjct: 336 RVVIDFAHTGKSLE-----EALKTLRATTRGRLLLVVGAA---GERDPRRREDIGRVAAR 387

Query: 399 YNISHVWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV 449
                 +         + A+ +AL ++                      S   +GD V++
Sbjct: 388 LADKTFFTEEDHRTEDLQAILEALAKAAREEGGLYELIPDRKEAIFCALSEAREGDTVLL 447

Query: 450 --KS 451
             K 
Sbjct: 448 AGKG 451


>gi|262404720|ref|ZP_06081275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
 gi|262349752|gb|EEY98890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sp. RC586]
          Length = 495

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 149/458 (32%), Gaps = 42/458 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               +  + +DSR I   + F AI+G   DG  FI  A+ +GA  V+   D   + G + 
Sbjct: 23  ASLVITHLELDSRQIKSGDTFVAIRGHAVDGRQFIDKAIAQGANAVLAEADAHHAHGQIE 82

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              ++PV  + ++   L+++A          +I +TG+ GKTT  +++   L  +    A
Sbjct: 83  YREAVPVMYLSELGQHLSEMAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAA 142

Query: 139 CIGSY-----------NNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRP 184
            +G+             N  G  L +     D          L  S  G ++     +  
Sbjct: 143 VMGTTGNGFLNALEPAANTTGNALQIQATLWDLAERGAQYTALETSSHGLVQGRVKKLNF 202

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+
Sbjct: 203 VAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV 262

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +     ++    +    +       +         E+    IG   A N+L+    + 
Sbjct: 263 SLVTKPDTAQAIWARQ--VEYAESGITLNFDSSWGEGELHAPLIGEFNACNVLLAFATLL 320

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +    +       P  GR + ++             + +A           L  + 
Sbjct: 321 SLGFEKSALLATAPQLRPVIGRMELFQREQKAKIVVDYAHTPDA-------LEKALRALR 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
            H  G+  A++G     G         +   ++      V L+  +            + 
Sbjct: 374 VHCAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMV 429

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L      H          +   +    D++++  K 
Sbjct: 430 VGLTHPERAHIEHHRFQAASYALQNAGAQDIILLAGKG 467


>gi|261749337|ref|YP_003257022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
 gi|261497429|gb|ACX83879.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Blattabacterium sp. (Periplaneta americana) str. BPLAN]
          Length = 490

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 140/464 (30%), Gaps = 49/464 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I   PQ ++ GISI S+ +     FFA KG   DGH FI  A+QKGA  VV     V  +
Sbjct: 17  IIGNPQKWIKGISICSQLVEIDTIFFAKKGKKTDGHQFITEAIQKGANTVVCEKKPV--L 74

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              +I    V + + AL  ++         K  ++ ITG+ GKT+   +L      + + 
Sbjct: 75  LHKNITYVIVKNSMDALGTISSNFYDHPTKKIKLVGITGTNGKTSVATILHHLFYKMGEK 134

Query: 137 YACIGSYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              I +                P          + +        + +S  G  +     +
Sbjct: 135 SILISTMGIKILSQEFPTKHTTPSIVDINKYLNLSIQKGCKYAFMEVSSHGIHQKRIAGL 194

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V+T I   HL      E   S K   FE         L   D        +    
Sbjct: 195 LFTGGVLTNITHDHLDYHKSFENYLSTKKSFFENFLPKNAFALINSDDPNSH---EIIKN 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  IY +G  K  D++++  K+    + + +        ++      ++       + +
Sbjct: 252 VLAKIYFYGLKKKTDYRIKIMKKNIHGNQLLIDGHKFFTFLIGEFNVSNLLACYATAILL 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                           +      +G+  +     G   ++D ++N +   +K  +  + +
Sbjct: 312 GK------KKEEILQKINTIPPIKGRFEQFISYSGIRIIVDYAHNPD--GIKNLLKAIQE 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------H 410
           I    E     +       G         L   +          +               
Sbjct: 364 IKKQEERLICII-----GCGGNRDKEKRSLMGKIVYETCDLSIFTSDNPREEDPEKILID 418

Query: 411 VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   +  L +    +                  + D++V+  K 
Sbjct: 419 MKNFRSYLNKDKEDILTIVNRKEAIRTAIQMAREKDIIVIAGKG 462


>gi|288937143|ref|YP_003441202.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|290512566|ref|ZP_06551932.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
 gi|288891852|gb|ADC60170.1| UDP-N-acetylmuramyl-tripeptide synthetase [Klebsiella variicola
           At-22]
 gi|289774907|gb|EFD82909.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Klebsiella sp. 1_1_55]
          Length = 495

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/478 (13%), Positives = 140/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A  G +     +PV  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + ++      + E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|302877573|ref|YP_003846137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
 gi|302580362|gb|ADL54373.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gallionella
           capsiferriformans ES-2]
          Length = 503

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/483 (14%), Positives = 138/483 (28%), Gaps = 47/483 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M P  T   L   +            +N +  DSR++   + F A  G   DG  FI  A
Sbjct: 1   MTP--TLSQLQLQLG---------VPLNHLVTDSRTLKSGDVFMAYPGEKTDGRQFIAQA 49

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           + +GA  V+ +        + ++P  G+ D+      LA A          +I +TG+ G
Sbjct: 50  ILQGAAAVIWDAHNFVWDKAWTVPNIGISDLRHNAGFLADAIYGEPSKSLRMIGVTGTNG 109

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T   +  AL    K  A IG+  N     L  +         +  L    L      
Sbjct: 110 KTSTCHWIAQALGDAGKKCALIGTLGNGFVNELEASANTTPDAIRVQGLLADFLNSGAQA 169

Query: 179 THLV--------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             +               R  +A++T ++  HL     +E  A+ K  +F+       + 
Sbjct: 170 AAMEVSSHALAQGRVNGVRFDVALLTNLSRDHLDYHGDMESYAATKRRLFDWQSLNYAVI 229

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D    EL             Y          +    +              K     
Sbjct: 230 NLDDAFGAELALQLVDKTVEVIGYGTTDEALRLAERHGLRMVYGVVLEMDSHGMKVEVRS 289

Query: 285 HH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                          N+   LG + +L     T   A++  +  +    R +        
Sbjct: 290 SWGAAQLSTQMVGRFNVSNLLGALGVLLVSDVTLDAAVASLNAVQPVTGRMQKLGGNDQP 349

Query: 340 TLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            +I + ++  +           +       G+ I V G     G         +   ++ 
Sbjct: 350 LVIVDYAHTPDALEKVLLALCEAAQGTKAGGQLICVFG----CGGDRDRGKRAMMGRVAE 405

Query: 399 YNISHVWLSGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV- 449
                  ++  +  +      + + +       +              +     D+V++ 
Sbjct: 406 KFADRCIVTSDNPRSEDAQQIIGEVIAGMNEGRHEVISDRADAIGHAIAMAGRADIVLIA 465

Query: 450 -KS 451
            K 
Sbjct: 466 GKG 468


>gi|312173527|emb|CBX81781.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 495

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 141/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A+ G +     +PV  +  +   L+ LA     +  A +  I  +     
Sbjct: 61  AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   LA         +                 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    SAK  +F   +    I  
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQVGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L+    A+ +    +     +  + +  K       + ++         + 
Sbjct: 241 ADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +       S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L+    H +GR   + G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +                      GD+V+V  K 
Sbjct: 410 VITDDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|292489362|ref|YP_003532249.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
 gi|292898414|ref|YP_003537783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291198262|emb|CBJ45368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Erwinia amylovora ATCC 49946]
 gi|291554796|emb|CBA22623.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia amylovora CFBP1430]
          Length = 495

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR+ A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRTAASGDLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A+ G +     +PV  +  +   L+ LA     +  A +  I  +     
Sbjct: 61  AAVIAEAEGAANDGQIVEMHGVPVIYLAQLSQRLSALAGRFHQQPGAKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   LA         +                 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHVLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +    SAK  +F   +    I  
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDMARYESAKWLLFTEHQVGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L+    A+ +    +     +  + +  K       + ++         + 
Sbjct: 241 ADDEVGRRWLQKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDRGAGVQFASSWGDGHID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +       S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLSALTATASQLQPVIGRMEVFSAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L+    H +GR   + G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVV 409

Query: 405 WLS-----GFHVLALK----DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++     G    A+       L  +                      GD+V+V  K 
Sbjct: 410 VITNDNPRGEEPAAIVGDILSGLLDAGRARVIPGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|228933512|ref|ZP_04096365.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826241|gb|EEM72021.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 270

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 120/279 (43%), Gaps = 14/279 (5%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  +HL      +EIA AK EI +GL + G    N D+     L ++++       
Sbjct: 1   MITMIGQSHLETLGSRKEIAKAKLEIIDGLRENGLFLYNGDEP----LLSRNNKTSSVNC 56

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG+    D      +        ++       +V  HG        + + +G      
Sbjct: 57  KTFGEKDTNDLFPTNVQLDEYGVHFKLNHTKIQYDVPLHGKHNIFNTIVGIAVG-----Q 111

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                  K             R++    +  FT+I++++NA+P+SMKAAI  L +++ + 
Sbjct: 112 FYKVPTEKIQEALQQINITQMRFQFLTAKIGFTIINDAWNASPSSMKAAIETLQKLNAYK 171

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
           +   I V+GDM E+G+ ++++H ++ ++L+  NI +V+  G     + +   ++     V
Sbjct: 172 KK--IIVIGDMLELGKKAETYHREIGKMLNEENIQYVFTYGELAKFVAEEARKNYHIGKV 229

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              +    +   +   +   DVV++K S      +++  
Sbjct: 230 QSFDNKAEIAEEVLKVITKKDVVLLKGSRGIALEQIVQK 268


>gi|149910622|ref|ZP_01899260.1| MurE [Moritella sp. PE36]
 gi|149806350|gb|EDM66325.1| MurE [Moritella sp. PE36]
          Length = 503

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 155/475 (32%), Gaps = 49/475 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
            + +   +  I  +  VN + IDSR +   + F AI G   DG  FI  A++ GA  V+ 
Sbjct: 16  CRVLSLQAWNIDLELVVNALIIDSRKVQAGDCFVAINGHALDGRRFISKALKSGATAVLK 75

Query: 71  NTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
           + D  A  G +      P+     +  AL+ LA            +I +TG+ GK+T  +
Sbjct: 76  DADNEAEHGHIDYIDQRPIISFFGLNQALSALADNFYQSPSQQLKLIGVTGTNGKSTITQ 135

Query: 125 MLTIALS-------------SIKKTYACIGSYNNHIGV---PLTLARMPVDVDFGIFELG 168
           ++   ++             +               G+        ++    +    E+ 
Sbjct: 136 IIANWVTLLAGKAGVMGTIGNGLFAQLTQAENTTGSGLDVQAEIANQLQQGAELCAMEV- 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G I+   + +   +A+ T +   HL     ++  A AK  +F+G        LN D
Sbjct: 195 -SSHGLIQGRVNALDFDVALFTNLTRDHLDYHGDMDAYADAKKILFQGAV--KHKILNVD 251

Query: 229 DSFFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D++ ++   +   A+             A     +    +     E++       +    
Sbjct: 252 DAYGKMWAQQWSDAIQFSVRQDLSAHHGAFLYCNELSFDTGGFSCELKTSWGDGTLQCSL 311

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N++     +  L  D+D  ++         GR + ++ A           + +
Sbjct: 312 IGEFNASNVVAACASLLALGYDLDDLLRVAPKLTAVCGRMELFKQAGQAACVVDYAHTPD 371

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A           L  +  H EG+   + G     G    +    L   ++        ++
Sbjct: 372 A-------LEKALQALRVHCEGKLWCIYG----CGGDRDTGKRPLMAQVAEQFADMAVIT 420

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            + + L +    H          +        D+++V  K 
Sbjct: 421 DDNPRTESAAAIVTDMLNGLAKPDAAHVIHDRRRAIQWAMEQSSADDIILVAGKG 475


>gi|70727423|ref|YP_254339.1| hypothetical protein SH2424 [Staphylococcus haemolyticus JCSC1435]
 gi|68448149|dbj|BAE05733.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 686

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 183/486 (37%), Gaps = 39/486 (8%)

Query: 4   LWTFHDLLQAIQGHS--IGIVPQGFVNGISI-----DSRSI----------------APQ 40
           + T   +   I G            +N         +S+                     
Sbjct: 1   MLTIKKIFNIIGGELKDAHNKEANEINDFETIYKFVNSKKTAYFSPNKETWSRELGRNKN 60

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
                      DG+D +    + G   +++  + ++ +    IP   V+D + A  +LA+
Sbjct: 61  AL---------DGNDLVNK--ENGEIGLIITENYISDL-KFEIPQIIVEDSVQAFKQLAI 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R +    +IAITGS+GK++T+ ++T  L           + N    +   + ++  + 
Sbjct: 109 YIRNQYTNPVIAITGSMGKSSTRMLITSLLGDYNVLENRGNN-NVRAAIYNNMLKLIKNP 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEK 219
           DF + E  M+ +  +   +  ++P IA+IT I  AH S F  +++IA  K  IF+G    
Sbjct: 168 DFAVIETSMNAINYLENTSTFLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRIFDGLSST 227

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           TG   +N D  + + L  K+H      +                 + ++ S        +
Sbjct: 228 TGVAIINKDTLYADYLIDKAHENASNVLTYSINKDAKADLTVDNIKYNKGSIELSITNQE 287

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +   ++                I+++ + ++    + L+ F P                 
Sbjct: 288 NKSEIYRLNTISEGMVSNTLASILTLKSLNLPIKQELLNDFKPFSKILALKEIHAKTHKL 347

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           TL+D+++NA+  +M  AI   +  +    G +I  +G + ++G  S   H+ L E L   
Sbjct: 348 TLLDDTHNASLPAMINAIRAFNSQTKFYSGHKIIAIGKISDLGRKSNETHLKLVEELENS 407

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFY 458
           N  ++      +  + + + R+ ++ +    + L   ++    +  + ++KSS     F 
Sbjct: 408 NADYILCKDNELRQVVNKV-RNKNITWYPNKELLINDLKYLCNEDSLTLLKSSVTGTDFP 466

Query: 459 RLINLL 464
            +   L
Sbjct: 467 EIAKNL 472


>gi|329115572|ref|ZP_08244294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
 gi|326695000|gb|EGE46719.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acetobacter pomorum DM001]
          Length = 489

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 160/473 (33%), Gaps = 43/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL A+      +     ++ I+ DSR + P   F A+ G   DG  FI  AVQ GA 
Sbjct: 5   LSTLLAAVG--LPALPGNPEISSITADSRQVKPGTLFAALPGVKADGRAFIATAVQNGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+   D        + P+    +   AL  +A          ++AITG+ GKT+T + +
Sbjct: 63  AVLAPADTQWPTDVPACPLVLASNPRHALALMAAVLAGPQPQHLVAITGTNGKTSTADFM 122

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMS 170
               +      A IG+         +++   +     +                  L  S
Sbjct: 123 RQIWALQGFKAAAIGTLGLTGAEETSISFPALTTPDPVALANGLAALTQAGFQHVALEAS 182

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +    A  T +   HL     IE   +AK ++F+ L     I     D 
Sbjct: 183 SHGLEQGRLDGLHLAAAGFTNLTRDHLDYHLTIEAYRTAKLKLFDTLLPEHAIAAANADM 242

Query: 231 FFELLKAKS-HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             + L+A    A                 +L  +        + ++  G++  V+    G
Sbjct: 243 DAQTLQAICAIAARRNLRLRLVGEHGTTLRLVAYNALPAGQELTIEHDGRTSTVLLPIPG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L+ + + +   A++   +  L       GR +R     N      +D ++  +
Sbjct: 303 RFQADNVLLAVALAAQDNAEITRILPLLPHLKGVRGRLERATVLPNGACA-YVDYAHTPD 361

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +      +L+ + PH  G+ I VLG     G    S    L    ++       ++  
Sbjct: 362 ALA-----RLLASLRPHARGKLIVVLGA----GGDRDSGKRPLMGQEAVKGADIAIITDD 412

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +K   P+++ +              S L   DV+VV  K 
Sbjct: 413 NPRTENPASIRADIKTGAPQALEI---ADRKQAIAEALSMLKADDVLVVAGKG 462


>gi|320540410|ref|ZP_08040060.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
 gi|320029341|gb|EFW11370.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-
           diaminopimelate ligase [Serratia symbiotica str. Tucson]
          Length = 495

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/478 (14%), Positives = 139/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----GPWVPTAPRRALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A  G++     +P+  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAVIAEANGQAEDGAIVEMHGVPIIYLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  S               G+   +          +                 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLNHVCPAENTTGSAVDLQHQLNDLAEQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV + ++  HL     +    +AK  +F G +    I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFSNLSRDHLDYHGDMANYEAAKWTLFAGHDVGQMIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D      L     A+ +    +     +  + +          + +         E+ 
Sbjct: 241 ADDQVGQHWLSKLPDAVAVTMQDNLLPGCHGRWLKTTAISYHDNGATLRFSSNWGDGEIA 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +D  ++  S   P  GR + +              
Sbjct: 301 SQLMGAFNVNNLLLALATLLALGYPLDKLVETGSRLQPVCGRMEVFNAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H +GR   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCQGRLWCVFG----CGGDRDKGKRPLMGGIAEQFADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +            +   L  +                     + DVV+V  K 
Sbjct: 410 VLTDDNPRTEEPQAIINDILAGLLDAGQALVIPGRAEAVTSAIMQAQEQDVVLVAGKG 467


>gi|212639660|ref|YP_002316180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
 gi|212561140|gb|ACJ34195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Anoxybacillus flavithermus WK1]
          Length = 488

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/474 (17%), Positives = 156/474 (32%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LLQ +   +        +  I +DSR +     F  IKG   DGHDF        
Sbjct: 1   MKLQTLLQHLHSFTPLATENPTITSIEMDSREVKQGSLFVCIKGFTVDGHDFAEQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +     +L +PV  V+D   AL  LA A   +   +  +I +TG+ GKTTT
Sbjct: 56  AVARGAVAVVAEKPLALPVPVIYVNDSRRALAVLADAFYGQPTHQLHLIGVTGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             ++        K    IG+ N  IG              V   + R  VD    I  + 
Sbjct: 116 THLIERICRHAGKKTGLIGTINMKIGDDTYDVKNTTPESLVLQNMFRKMVDAHVDIVAME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +E    +K       G          
Sbjct: 176 VSSHALHMGRVHGCDFDVAVFTNLTQDHLDYHRTMEHYRWSKGLLFAQLGNRFDHQRPKF 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +       T+ ++G    +D   ++ +  +  +  ++    ++++V   
Sbjct: 236 AILNADDAASEEYKKSTAATVVTYGIHHKSDIMAKQIEITTSGTTFQLITPIETVQVKTK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +    +    + T ++A++      GR   +        FT+I +  
Sbjct: 296 LIGMFNVYNLLAAVAACLVSNIPLSTIVEAIADIEGVPGR---FEVVDAGQPFTVIVDYA 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   +      +VL  I    + R   V+G     G         L   +++        
Sbjct: 353 HTPDS----LENVLQTIRQFAKKRVFVVVG----CGGDRDRTKRPLMAQIAVKYSDVPIF 404

Query: 407 SGFHVLA-----LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +     + + + + +   V           +        D++++  K 
Sbjct: 405 TSDNPRSEDPLVILNDMKQGVAEDVVCIVDRKEAITYAIEQAEKDDIILIAGKG 458


>gi|229822995|ref|ZP_04449065.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
 gi|229787808|gb|EEP23922.1| hypothetical protein GCWU000282_00288 [Catonella morbi ATCC 51271]
          Length = 496

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 144/475 (30%), Gaps = 38/475 (8%)

Query: 7   FHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DLL+A+  G   G   +G +  +  D+R++ P  AF AIKG  +DGH  +      GA
Sbjct: 3   VEDLLRAVPSGQLYGPEIKGEITQLVNDTRNLVPGCAFVAIKGLQFDGHTAVDQVAAAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            L+VV   +  +     +  F V     A   LA     R   +  ++A+TG+ GKTT  
Sbjct: 63  KLMVVE-VLPENWQDYPLSFFLVPSTFRAQALLANQFFGRPTEQLNVVAVTGTNGKTTIS 121

Query: 124 EMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDV---DFGIFEL----------GM 169
            +++  L  +      IG+ +               +         E+            
Sbjct: 122 SLISDLLMRLGHKTGLIGTLHYKVDQTYYPSINTTPNALALQQLFAEMVSVGCQDALIEA 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNY 227
           S                A+ T +   HL     +E  A AK+      G +  G      
Sbjct: 182 SSHALALGRLWATDIDCAIFTNLTREHLDFHKTMEGYAYAKSLLFAQLGQKFAGEGPRLA 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  +   +         + ++                 + +             V   
Sbjct: 242 IINADDPYASIMMQATSADVLTYSLEDPKASAYADQLAVQDGNQTFRLHYRNQTYQVVSP 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +         M   +  +    V        +       G+  R  L Q F  ++D ++ 
Sbjct: 302 MLGAYNVANFMAAFLCLVDYYHVQPQTVVDLMLSFGGVEGRMQRLDLGQEFQVVVDFAHT 361

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         VL ++      R + ++G     G        ++ + +  Y+   +  +
Sbjct: 362 PDAIE-----RVLQELKAQSPKRLVTIIGHSG--GNRDSGARPEIGDKVFEYS-DWIIFT 413

Query: 408 GFH------VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
             +           + +     V     E       ++ S    GD++V   K S
Sbjct: 414 ADNPRHEPVAKICAELIGNHDEVPYQVIEDRKAAIDYVISQAQAGDLLVFAGKGS 468


>gi|238791168|ref|ZP_04634807.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
 gi|238729301|gb|EEQ20816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia intermedia ATCC 29909]
          Length = 471

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AI G   DG  +I  A+ +G   V+   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGVAAVIAEADGVAPDASVVEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L+KLA     +      ++ +TG+ GKTTT ++L     ++ + +       
Sbjct: 62  YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +    I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLGQLPQAVAVSMEGQV 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               N  +            + +         ++    +G     N+L+ L  +  L   
Sbjct: 242 PTGWNGPWLSANNVHYHDNGASIAFDSSWGEGKLESRLMGAFNVSNLLVALSTLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +       P  GR + +              + +A           L+    H +G
Sbjct: 302 LAQLLATAPNLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H                   + DVV+V  K 
Sbjct: 411 AGHALAIHGRAEAVTSAIMQAKEEDVVLVAGKG 443


>gi|300112938|ref|YP_003759513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
 gi|299538875|gb|ADJ27192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus watsonii
           C-113]
          Length = 519

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 147/475 (30%), Gaps = 46/475 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + +    IG V +  ++ +S+DSR + P   FFA +G    GH +I  AV +GA  +V
Sbjct: 26  LAEWV---PIGAVRERRISSLSLDSRQVVPGALFFACQGTQQSGHGYIGAAVNQGAAAIV 82

Query: 70  ------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
                 V+  +   +   +IP+  + D+   L  +A    L+      ++ +TG+ GKT+
Sbjct: 83  YDPVIPVSPVIQTQLQVQNIPLIPLPDLDSRLGIIANRFYLQPSRQFCVLGVTGTNGKTS 142

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------ 169
               L  AL   +     IG+    +   L  + +       + E               
Sbjct: 143 VSHFLAQALHRQEVPCGLIGTLGRGVVDALQPSSLTTPDAITVQEQLAAMVASKARYAVL 202

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S     +     V  +IA+ T ++  HL     +    +AK  +F        +    
Sbjct: 203 EVSSHALGQGRVSGVAFNIAIFTNLSREHLDYHGDMARYEAAKFRLFNQPGLRHAVINGD 262

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D +    L      +   +        N    L   K   ++  + + +Q    E     
Sbjct: 263 DAAGRAFLANLPPEVKAISYG----LMNPQASLHTGKLRCDRHGIAMTIQSAWGEGQLTC 318

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N    L  +  L A      +AL           R      +    L+   Y 
Sbjct: 319 PLLGRF-NAYNLLAALGGLLAVGMPFTEALQRLSQVRAVVGRMESLGGEEGEPLLVVDYA 377

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  L        GR   V G     G         L    +      V L+
Sbjct: 378 HTPDALEQVLRSLRA-HLGPGGRLWCVFG----CGGNRDRGKRPLMGAAAERLADFVMLT 432

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   +     V+         +         D+V++  K 
Sbjct: 433 DDNPRNEDPIQIIVDILSGIDDPDRVYQFRNRSEAIIRATQLAEPEDIVLIAGKG 487


>gi|289677695|ref|ZP_06498585.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 134

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +G        G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVGG--DCSFAGVSTDSRGIEPGQLFVALTGPRFDGHEYLDQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTK 123
           A   +V  ++  +    ++P   V D   AL +L    R       + A+TGS GKTT K
Sbjct: 59  AVGALVEREVQGA----ALPQLVVLDTRKALAQLGAMNRNAFVDRPVAAVTGSSGKTTVK 114

Query: 124 EMLTIA 129
           EML   
Sbjct: 115 EMLASI 120


>gi|257898999|ref|ZP_05678652.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836911|gb|EEV61985.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 496

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 105/477 (22%), Positives = 203/477 (42%), Gaps = 36/477 (7%)

Query: 4   LWTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQ-----EAFFAIKGPHY----- 51
           + + H LL  + GH +         +  +   S  +          F  +          
Sbjct: 1   MTSIHSLLVDMDGHYLKKYGDLDRNIQDVEYFSGHLKRNMDYSDTMFVCVSPERRSYVNR 60

Query: 52  ------DGHDFILHAVQK----GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
                 DG+      + K    G  ++V    ++    S++ P F V+D    L +L+  
Sbjct: 61  KVVRWRDGN---EQIIGKENWFG--VIVTEKPIMD--PSVTTPQFIVEDSWKFLLELSAK 113

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            R      ++AITGS GKT+T+ M+T  L   K       ++N    VPL ++++  + D
Sbjct: 114 LRSCFVNPVVAITGSAGKTSTRMMITHLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPD 172

Query: 162 FGIFELGMSHLGEIRFLTHLV--RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               E+ ++ L      +     +P IA++T+I  AHLS+    + +A  KA+IFEGL++
Sbjct: 173 VLNLEVSVNALNSYDTGSMSNLIQPDIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQ 232

Query: 220 TGTIFLNYDD--SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            G   +N D     F +L + +     K +       +    +++  Q  E   + V   
Sbjct: 233 DGIAIINGDIGKEEFSILVSAAEKRTSKIVVYSLHDASRAVFVKQISQKREYCEVLVSFF 292

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQ 336
           G+ + +        M  N L  L +   L  ++   IK    F P  +   +    +   
Sbjct: 293 GEDILLKLAVSSEGMIANSLAALIVAKELKKEISPYIKKFETFKPLPKILERTIYTSETG 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             FT ID+++NA+  SMK AI+    I P  +G ++ +LG + ++G+ ++  H  + E L
Sbjct: 353 TDFTFIDDTHNASLPSMKNAINYFDGIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEEL 412

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +    +H++  G H   L +   +    + + +++  L   +++ L++  +V+ K S
Sbjct: 413 NQSAATHIYGYGEHFKLLFEEGQKIDDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 469


>gi|94312064|ref|YP_585274.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus metallidurans CH34]
 gi|93355916|gb|ABF10005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 515

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 92/497 (18%), Positives = 151/497 (30%), Gaps = 59/497 (11%)

Query: 1   MN--PLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HY 51
           M   PL       QA    +           + G   D+R + P + FFA   G      
Sbjct: 1   MTRQPLLPLEVSAQASNALAWLRTHAPENAQLTG---DTRRLQPGDVFFAYVLGNERLAT 57

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKAT 109
           DG   I  A+  GA  +V   D  A      +P   V  +      +A           T
Sbjct: 58  DGRPHIDKAIAAGASAIVYEADNFAWPHDDRVPHLAVSHLHELAGPIAAGWYGIAACNLT 117

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---- 165
           I  +TG+ GKT+  + L   L       A IG+  +  G P  L          +     
Sbjct: 118 IAGVTGTNGKTSCSQWLARLLQMAGTRCATIGTLGS--GFPDALKLTGFTTPDAVQLQAS 175

Query: 166 ------------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                        + +S  G  +         +AV+T +   HL     + E  +AKA +
Sbjct: 176 LAELHDAGARAVAMEVSSHGLEQGRVAGTGFAVAVLTNLTQDHLDYHGTMAEYEAAKARL 235

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS--------KNADFQLRKWKQ 265
           F        +    D     LL + + A+    +  +G          +    +    + 
Sbjct: 236 FAWDGLKAAVINRDDGMGQRLLASNAVAVSAPQVIEYGIDGKAGASVARGQWLRATGVRA 295

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
               +   V     + +V    IG     N+L  LG         D AI AL    P +G
Sbjct: 296 TGAGTAFHVDGSFGTADVTTPMIGAFNVSNLLAVLGAALAQGVTWDAAIDALRRLTPVDG 355

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R               + + Y   P ++   ++ L  ++   +G+   V G     G   
Sbjct: 356 R---MELFGGHDAPLAVVD-YAHTPDALVQTLTALRPVAQARQGKLWCVFG----CGGDR 407

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLF 436
            +    L   ++      V L+  +           A+ D +         E      L+
Sbjct: 408 DATKRPLMGGVAERLADEVVLTSDNPRSEDPREILEAIADGMSDRARAALIEDRAAAILY 467

Query: 437 IQSSLVDGDVVVV--KS 451
                   DVV+V  K 
Sbjct: 468 AIKHAAPADVVLVAGKG 484


>gi|56412395|ref|YP_149470.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197361331|ref|YP_002140966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|81359648|sp|Q5PDH1|MURE_SALPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56126652|gb|AAV76158.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197092806|emb|CAR58232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 495

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++V     A+ G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIVEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|238797711|ref|ZP_04641206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
 gi|238718463|gb|EEQ10284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia mollaretii ATCC 43969]
          Length = 471

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 71/454 (15%), Positives = 141/454 (31%), Gaps = 45/454 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S+     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDASVSEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ + +       
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +     A   +     ++    +N DD       ++       ++ S 
Sbjct: 182 NLSRDHLDYHGNM-ASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMESQ 240

Query: 251 GKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             +         RK +     + +         ++    +G     N+L+ L  +  L  
Sbjct: 241 VPTGWKGPWLSARKVQYHDNGASIAFDSSWGEGQLESRLMGAFNVSNLLVALSTLLSLGY 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   + A     P  GR + +              + +A           L+    H +
Sbjct: 301 PLAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCK 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419
           G+   V G     G         L   ++      V ++  +            +   L 
Sbjct: 354 GQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLL 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + H                     DVV++  K 
Sbjct: 410 DAGHALAIHGRAEAVTSAIMQAKADDVVLIAGKG 443


>gi|114330278|ref|YP_746500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
 gi|114307292|gb|ABI58535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas eutropha C91]
          Length = 520

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 133/467 (28%), Gaps = 43/467 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  ++ DSR++ P + F A  G  +D  + I  A+  G   V+      +      I
Sbjct: 22  SVKIQRLAADSRTLKPGDTFLACAGEQHDARNDIPQAIALGVNAVIWEKQGFSWKPEWKI 81

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P  G+  +     K+A            ++ ITG+ GKTT        + ++ +  A IG
Sbjct: 82  PNLGISGLRHEAGKIASQVYDHPSRHLRLVGITGTNGKTTCSHWYAQTMMTLGEKTAIIG 141

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPH 185
           +     G P  L          ++                 +  S  G  +         
Sbjct: 142 TLG--HGFPGALNHANHTTPDAVYLQQLMADYLQHGARSLVMEASSHGLSQDRLAGSEFS 199

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T +   HL     ++  A+AKA++F        +    +    EL +  +      
Sbjct: 200 IAVLTNLTRDHLDYHGSMDAYAAAKAKLFFWEGLQHAVLNLDEVLGVELSQQLAWKDVSI 259

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ-----SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             Y F +   +       K          +                        N    L
Sbjct: 260 IGYGFRQPDPSARTTGNQKILYGSNLRFTTQHISFDVEFCNRRASLQCNVTGRYNAYNLL 319

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID------ESYNANPASMK 354
            +++ L A       A++     +    R           +I       ++ N     ++
Sbjct: 320 AVLATLLASNVDLDDAITALQQVQPIPGRMEKLGGGDQPIVIVDYAHTPDALNEVLTGLR 379

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
             ++         + +   V   +   G         L   ++ +    V ++       
Sbjct: 380 ETLAGTRMKKRIRKNQAKLVC--VIGCGGDRDRGKRPLIGEIASHLADEVIITSDNPRNE 437

Query: 410 HVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   + + +       H                    GD+V++  K 
Sbjct: 438 NPADIINEIMLGASGKHCTAEADRTAAIYRAIHGARKGDIVLIAGKG 484


>gi|312901616|ref|ZP_07760887.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
 gi|311291304|gb|EFQ69860.1| Mur ligase family, catalytic domain protein [Enterococcus faecalis
           TX0470]
          Length = 178

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 1   MN-PLWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M  P W   ++ QA++  +     P   + GI  DSR I     F  ++G + DGH FI 
Sbjct: 18  MKLPFW---EVAQAVEASNDWQQWPDFPLTGIEFDSRKIVKGNLFVPLQGEN-DGHRFIE 73

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A+  G        D+V +     +PV  V D L A+ +LA     + +  +IA+TGS G
Sbjct: 74  SAMANGCQAAFWGQDLVDA--PQQLPVLHVTDPLVAMQRLATYYLNKMQPNVIAVTGSNG 131

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           KTTTK+++   LS    TY   G+YNN IG+P 
Sbjct: 132 KTTTKDLIAAVLSEKFVTYKTQGNYNNQIGLPY 164


>gi|332969036|gb|EGK08076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella kingae ATCC 23330]
          Length = 491

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 83/447 (18%), Positives = 153/447 (34%), Gaps = 39/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-ASIGSLSIPVFGVDDV 91
           DSR I P + F A +G + DG ++I  A++KGA  V  + D       +  IP   + ++
Sbjct: 29  DSRKIQPNDVFIACQGEYADGRNYIQSAIEKGAAFVYWDADGDFVWNENWQIPNQPIAEL 88

Query: 92  LGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
                 LA +          II +TG+ GKT+  + L  A+  ++   AC        G 
Sbjct: 89  RQRAGILANSVYGNVSGSLNIIGVTGTNGKTSITQWLAQAIDILENKSACAIIGTVGNGY 148

Query: 150 PLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTIA 193
              L          +                  + +S  G  +F  + V    A+ T + 
Sbjct: 149 WGALQETTHTTPDPVSVQTLLRQFQQSGASHIAMEVSSHGLHQFRVNGVPFQTAIFTNLT 208

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL   + +EE   AKA +F        I  + D+   +L+           +YS+G +
Sbjct: 209 RDHLDYHNSMEEYGEAKARLFHWQGLQNAIINSDDEFGAKLVAE--LKQSSLHVYSYGFN 266

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           ++AD ++ ++   ++   + +Q    +  V    +G   AQN    LG +         A
Sbjct: 267 EHADIKITEFVANTQGMKIGLQTPWGNGSVQTRLLGRFNAQNFAAALGALCAEGYAFQAA 326

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +KAL+      GR                  + +A   ++     +        E +   
Sbjct: 327 LKALAQIRAATGRMDCIIRENKPLVVVDYAHTPDALEKALSTLREIQQ-----PESQLWC 381

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYS 427
           V G     G         L   ++      V ++  +         + D LP   +    
Sbjct: 382 VFG----CGGNRDRGKRPLMGAVAAQGADKVVVTSDNPRMEDPNAIIADILPTVPNAALV 437

Query: 428 E-TMDGLFLFIQSSLVDGDVVVV--KS 451
           +           +     D+V++  K 
Sbjct: 438 QVDRQTAIEQTIAQAAPQDIVLIAGKG 464


>gi|15616839|ref|NP_240051.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
 gi|11133479|sp|P57316|MURE_BUCAI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331973|pir||A84956 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) [imported] - Buchnera sp. (strain APS)
 gi|10038902|dbj|BAB12937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
          Length = 497

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/468 (15%), Positives = 147/468 (31%), Gaps = 45/468 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
            G      ++ +     +   ++ LA            II ITG+ GKTT  +++    +
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            +    A +G+  N     L            I                + +S  G I+ 
Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234
               V  +IA+ T +   HL     +E+  SAK  +F   +    I      Y   + + 
Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENLEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L                K           +Q +   ++  +    +  +    IG     
Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNSIYITFESSWGTGRISSCLIGRFNVT 312

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L++L  +  L   +   I       P +GR + +       F      + +A      
Sbjct: 313 NLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA------ 366

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
                L+ I  H +     + G     G         +   ++      V ++  +    
Sbjct: 367 -LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRNE 421

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + +       +           +         ++++  K 
Sbjct: 422 KEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 469


>gi|170076754|ref|YP_001733392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. PCC 7002]
 gi|169884423|gb|ACA98136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Synechococcus sp.
           PCC 7002]
          Length = 499

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 167/481 (34%), Gaps = 47/481 (9%)

Query: 4   LWTFHDLLQAIQG-HSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +     LL+ +    S+   P  Q  V G++ +S+++ P + F  + G   DG +F   A
Sbjct: 1   MMQLGALLKQVSAIESLADHPMLQQVVKGLASNSQAVMPGDLFIGLPGTRVDGGEFWQGA 60

Query: 61  VQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           ++ GA   VV+ + +    +     V  V D + A  ++A     +      ++ +TG+ 
Sbjct: 61  IEAGAIAAVVSPEALEKFPATKGECVIPVADPVIACAEIANLFYEKPTASLKLVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-------RMPVDVD 161
           GKTTT  ++   L + +          T             P  +         +     
Sbjct: 121 GKTTTSHLIEYFLQAAQQPTALIGTLYTRWPGYEKIATHTTPFAIDLQKNFAAALEAGNT 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L + R      +  +AV T +   HL     +E+   AKA +F      G
Sbjct: 181 HAVMEVSSHALHQNRVKGC--QFDVAVFTNLTQDHLDYHPTMEDYFQAKALLFNEEYCHG 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N D+ + + L    H LG K      +   AD  + +    +      ++    ++
Sbjct: 239 RAVVNLDNPYGDRLA---HKLGEKAWGYSLQDAAADLYMDRLIYTATGVEGRLKTPMGTV 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G    +N++  +G    L  D++  I  L  F    GR +R   A +Q    +
Sbjct: 296 EFTSPLVGQFNLENVMAAIGAGLALGLDLNQMITCLPQFQGVPGRMERVIVAEDQDISVI 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        ++L    P    + I V G     G         L   ++    
Sbjct: 356 VDYAHTPDSLE-----NLLKASRPFIAKKMICVFG----CGGDRDRTKRPLMGKIAATQS 406

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
               ++  +            + + +P +I                     GD V++  K
Sbjct: 407 DWAVVTSDNPRTEDPKQILADVVEGIPENIQFLVEADRATAIQRAILEAQPGDGVLIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|58038638|ref|YP_190602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
 gi|58001052|gb|AAW59946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconobacter oxydans 621H]
          Length = 486

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 153/475 (32%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L     G S  +     +  ++ DSR   P   FFA++G   DG  FI  A+ +G
Sbjct: 1   MRLSQLFALC-GTSQSLTDDPDILAVTADSRRAGPGTLFFALRGAKQDGSAFIPQAISQG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V+V+ +   +    ++PV    D    L  +A A      + I AITG+ GK++T +
Sbjct: 60  AAAVIVDQET--ARPDSAVPVIVRPDAKHLLACMASALAGPQPSCIAAITGTNGKSSTAD 117

Query: 125 MLTIALSSIKKTYAC--IGSYNNHIGVPLTLARMPVD-----------VDFGIFE--LGM 169
            L           A        +   VP   +    D              G+    L  
Sbjct: 118 FLRQLWILQGNRAASLGTLGLISDTDVPAPPSLTTPDPVSLSQTLAALARNGVEHVALEA 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     V    A  + +   HL     +E   +AK  +F+ +  TG I     D
Sbjct: 178 SSHGLEQHRLDGVTLTAAGFSNLTRDHLDYHLTLEAYRAAKLRLFDEVLPTGGIAAVNAD 237

Query: 230 SFFELL--KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              E         A     + S G++      +      S Q         +  E+    
Sbjct: 238 MDSETFSALQDIAARRSLKLRSVGRNGTTLRLIEARPTPSGQILRLALHGEELPEISLSL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G   A N+++   +     AD    +  L       GR +R     N     +    Y 
Sbjct: 298 PGRFQADNVMLAAAMCWQDDADTRQVVALLPRLTGVHGRCERAVALPNGAAAYVD---YA 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++     VLS + PH  GR + V G     G         L   ++        ++
Sbjct: 355 HTPDALDC---VLSSLRPHTTGRLVVVFGA----GGDRDRGKRPLMGAVAARMADLAIVT 407

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +  A P ++ +               +L  GD++VV  K 
Sbjct: 408 DDNPRTEEPSSIRSEILAACPDALEI---ADRRSAIAAGLEALQPGDILVVAGKG 459


>gi|168243462|ref|ZP_02668394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168820883|ref|ZP_02832883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194449143|ref|YP_002044093.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|238911180|ref|ZP_04655017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
 gi|194407447|gb|ACF67666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205337520|gb|EDZ24284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205342491|gb|EDZ29255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084366|emb|CBY94159.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 495

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|326204088|ref|ZP_08193949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
 gi|325985855|gb|EGD46690.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           papyrosolvens DSM 2782]
          Length = 487

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 152/477 (31%), Gaps = 55/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L++ +    I    +  V+ I+ DSR       F  ++G   DGH +I  A++ G  
Sbjct: 3   LKELVKDLNIKEINGSLEVEVDSIAYDSRKTKQGSLFVCVEGTVVDGHKYINDAIENGTK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
             +V   +        I     DD    L  +  A      SK  +I ITG+ GKTTT  
Sbjct: 63  AFLVQKHVDV---PEGITTIETDDTRFGLAAVSDAFFGHPSSKLNLIGITGTKGKTTTTY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIFELG 168
           M+   L +       IG+  N IG  +                    +   VD  + E+ 
Sbjct: 120 MVKAILEAAGHNMGLIGTVANLIGNQVLYTSRTTPESYDLQSLFNDMIDNKVDSAVMEV- 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
            S  G            I V T  +  H+     + +EE  +AKA++F+   K      +
Sbjct: 179 -SSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCNKAVINIDS 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   L           + ++G S  +D       + +  ++ ++     S+++   
Sbjct: 238 EHGRKMAELAE-------GKVLTYGLSSRSDIWASDVIKKTGHTFFKLNSPWGSIDIETD 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L  +G   ++       +K         GR +  +   N         + 
Sbjct: 291 LQGEFNIYNALAAIGSCCLIPGITLEHVKKGLTKVTVPGRMESVKTDGNYSVLIDYAHTP 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           ++          VL  +     GR +++ G     G             +S        +
Sbjct: 351 DS-------LEQVLKTVKEFAHGRVVSLFG----CGGDRDKGKRPAMGEISGNIADFTII 399

Query: 407 SGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  +   +              F   +  DGD++++  K 
Sbjct: 400 TSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAQDGDIIILAGKG 456


>gi|225416617|ref|ZP_03761806.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
 gi|225041863|gb|EEG52109.1| hypothetical protein CLOSTASPAR_05841 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/469 (15%), Positives = 150/469 (31%), Gaps = 38/469 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D L+ +    +    +  V+ +S DSR     + F  + G   D H FI    + G  
Sbjct: 3   LSDWLEGLDYELLQGSLEVQVSDVSYDSRKAKEGDVFVCMTGTRVDSHLFIPQVEEAGVR 62

Query: 67  LVVVNTDMVASIGSLS--IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           ++V+   +   + ++S  + V  V D   AL  L  A       K   + +TG+ GKTTT
Sbjct: 63  VIVIERPLEELLKAVSPQVTVLRVKDGRRALALLSAARFGYPARKMITVGVTGTKGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFE---LG 168
             M+   L +  K    IG+    IG               L +   D+     E   + 
Sbjct: 123 THMIKAILEAAGKKVGMIGTNGTVIGDRVTPNLNTTPESYQLHQAFADMVEAGCEYMIME 182

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G     T  +     + T I+P H+       +           +       +N  
Sbjct: 183 VSSQGIKMHRTDGLFFDYGLFTNISPDHIGP-DEHADFGEYLYYKSRLMTMCKVGLVNRG 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D  +E +   +         + G   +ADF+ R  +  +E++++  +        +   +
Sbjct: 242 DEHYEGIIKDASCRLYTYCVAEGDGASADFEARNIRYVAEENFVGTEFDVTGWLSMDVRL 301

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+   L  +S+ +       +           G+      ++    L+D ++NA
Sbjct: 302 GIPGLFNVDNALAAMSLCSFMGLDKQRMSHALEHIRINGRMEIVHTSKRCTVLVDYAHNA 361

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +L  +  +   R + V G     G             +         L+ 
Sbjct: 362 VSMES-----LLGTLRNYHPKRLVCVFG----CGGNRSKDRRYSMGEIGGRMADLCILTA 412

Query: 409 FHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +            ++ ++ +                +   +   GD++
Sbjct: 413 DNSRYEKPEDIIADIRSSIEKTGGDFVEIPDRRQAIEYSIENARPGDMI 461


>gi|16759118|ref|NP_454735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29140668|ref|NP_804010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|213052854|ref|ZP_03345732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426160|ref|ZP_03358910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213621300|ref|ZP_03374083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
 gi|213647636|ref|ZP_03377689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852463|ref|ZP_03381995.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289823739|ref|ZP_06543351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|21362697|sp|Q8Z9H3|MURE_SALTI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25331979|pir||AH0517 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diamino-pimelate ligase
           (EC 6.3.2.13) - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16501408|emb|CAD01280.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29136292|gb|AAO67859.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
          Length = 495

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +       +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|299533123|ref|ZP_07046508.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
 gi|298718900|gb|EFI59872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Comamonas testosteroni S44]
          Length = 501

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 154/479 (32%), Gaps = 49/479 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    + +  ++    G         +  DSR +   +AF A  G   DG  ++  A+++
Sbjct: 8   LNNAAEAVAWLRSRVQGD--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+V  D + +       +  +  +  A   +A            ++A+TG+ GKTT
Sbjct: 60  GAAAVLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163
           T   L  ALS +        +    +GV                       R   D    
Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S +G +       +  +A+ T     HL     ++    AKA++F+       +
Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAAV 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D     L            ++S      A  Q +      E     V   G S+ +
Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +   N+L  L  +  L   ++ A++A +   P  GR ++              
Sbjct: 298 NTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQPLVAVD-- 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L   +   +G+   V G     G    +    L    +  +   
Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQAHADG 409

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V+++  +  +         +   +     +H             +     DVV++  K 
Sbjct: 410 VFVTSDNPRSEVPESIIDQILAGMQAGQALHVQADRAAAIAQAIARAEARDVVLIAGKG 468


>gi|71909115|ref|YP_286702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
 gi|71848736|gb|AAZ48232.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dechloromonas aromatica RCB]
          Length = 492

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 80/470 (17%), Positives = 143/470 (30%), Gaps = 35/470 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  +LL  +    I        +G++ DSR + P + F A  G   DG  +I  A+ +
Sbjct: 1   MTTPRELLDQLAAMGIQP------SGVADDSRQVQPGDLFLAYPGDMADGRRYIGDALAR 54

Query: 64  GAGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
           GA  V+       S  S        V  +      LA A         ++IAITG+ GKT
Sbjct: 55  GAVAVLWQPSADFSWDSTLATANLPVAALRPLAGPLAHAVYGHPSEGLSLIAITGTNGKT 114

Query: 121 TTKEMLTIALSSIKKTY------ACIGSYNNHIGVPLTLARMPVDVDF-----GIFELGM 169
           T  + +  A                          P     M    DF         L  
Sbjct: 115 TISQCIAQAYPKPCAIIGTLGAGFPDSLIETGFTTPEATTLMRYLADFRARNAAACALEA 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +G      +  R  +A+ T     HL     +E  A AK ++F        I    D+
Sbjct: 175 SSIGIEEGRMNGARVDVAIFTNFTRDHLDYHGTMEAYAEAKEKLFHWPRLRTAIINLDDE 234

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               L++  +    +   Y+ G+++     L + +   +  + +          V     
Sbjct: 235 FGLNLMRETTAMRVL--GYAIGEARRDFPALVRAENLVDTPFGQRFNLVLPNGRVAVDTT 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+   L + ++L      A               R       G   ++ + Y   
Sbjct: 293 LVGRYNISNLLAVAAVLHDAGLAAADVAIRLSELTPPPGRMERLGGNGEPLVVVD-YAHT 351

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++ A++ L  ++    GR   V G     G             L+      V ++  
Sbjct: 352 PDALENALTALRDVATTRAGRLSVVFG----CGGDRDKGKRPQMGALAERLADRVLVTND 407

Query: 410 HVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +      + +                          D DV+++  K 
Sbjct: 408 NPRSEAPHVIINEITSGMTRAEVEADRATAIRRAVLEAGDQDVILLAGKG 457


>gi|254479325|ref|ZP_05092664.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034745|gb|EEB75480.1| Mur ligase middle domain family protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 535

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 139/357 (38%), Gaps = 14/357 (3%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158
              R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +   +  
Sbjct: 176 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKD 235

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL 
Sbjct: 236 THQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLP 295

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           + G   LN D+ +      K     +     S  + K   +            +  V   
Sbjct: 296 EDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAVTED 355

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G  ++     +G H   N+L  + +   L  + +   + LS   P   R    +      
Sbjct: 356 GMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRL---QLISTPH 412

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID+++N+NP         L+ +      RRI V   M E+GE     + +L + ++
Sbjct: 413 GVTVIDDAFNSNPEGA---KEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIA 469

Query: 398 LYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +  L G      + + L  +      V     +D     +Q+ L  GDVV+ 
Sbjct: 470 EV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQNLLQPGDVVLF 525


>gi|54310308|ref|YP_131328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum SS9]
 gi|46914749|emb|CAG21526.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Photobacterium profundum SS9]
          Length = 506

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/454 (14%), Positives = 133/454 (29%), Gaps = 44/454 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           +IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A  G +     I + 
Sbjct: 36  TIDSRQIEADDLFVAVNGHAVDGRGFIPAAINAGATAVLAEADNIAKHGDIVEQDGIVII 95

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
               +   L+ +A     +      ++A+TG+ GKTT  ++L     +    Y       
Sbjct: 96  YFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW--ANLIGYNAGVMGT 153

Query: 145 NHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAV 188
              G+  +L          I                  + +S  G ++     ++   ++
Sbjct: 154 TGNGLLNSLTPAVNTTGNAIEIPHVLHDLVDQGADFAAMEISSHGLVQGRVKALQFVASI 213

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +   A AK  +F   +    +    DD  F  L    HA+ + T  
Sbjct: 214 FTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVINADDDIGFTWLADLPHAVAVVTDK 273

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +          L           + +                       + L + ++L  
Sbjct: 274 ARLGEHYQGQALWLTDVMYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLLLALATLLAL 333

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                    +  H     G+            ++D ++  +          L  +  H +
Sbjct: 334 GHSIDKLIATAPHLTAVIGRMEVFQSPDKPMVVVDYAHTPDALE-----KALQALRVHCQ 388

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419
           G+   + G     G    +    +   +S      + ++  +            +   L 
Sbjct: 389 GKLWCIFG----CGGDRDTGKRPMMAEISERLADRIIITDDNPRTEAPAAIVSDMLQGLA 444

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           +        D++++  K 
Sbjct: 445 LPQQAQVIHDRKLACTYAIEHAQVNDIILLAGKG 478


>gi|89095264|ref|ZP_01168185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
 gi|89080471|gb|EAR59722.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanospirillum sp. MED92]
          Length = 488

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 161/476 (33%), Gaps = 52/476 (10%)

Query: 6   TFHDLL-QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +LL +  +    G      V+ IS DSR++ P   F A  G  + G DFI  AV  G
Sbjct: 7   TLAELLPEWAEPTHSG----IAVSAISQDSRTVVPGTLFVARSGLKHRGVDFIEGAVADG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V++++  ++   ++ +PV G+ D++  +  +A     +     T++ ITG+ GKT+ 
Sbjct: 63  AVAVLIDSSELSDCPNVDVPVIGISDLVSEIGPVAARFYEQPSRAMTVVGITGTNGKTSC 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------- 166
              +  A+++I    A +G+  N  G P  L +        I                  
Sbjct: 123 AHFVAQAMNNIGVKTAIVGTVGN--GFPGLLEKATHTTPDAIGLQKLFAELKAAGAEAVV 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +     V     + T ++  HL     +E    AKA +F+       +   
Sbjct: 181 MEVSSHALEQGRVAAVDFDYGLFTNLSRDHLDYHGSMEAYGEAKARLFKEFNLKAALING 240

Query: 227 YDDSFFELLKAK-SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            D    +LL+ +   A  +     FG+   A ++L      +E       L+  +     
Sbjct: 241 DDSFGRKLLRDESIEARKVSVGRLFGQYHFAAYRLALHGIEAE-------LKTPAGNFAF 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                       + L    +       A    S+       G+            +ID +
Sbjct: 294 ASKIIGEFNLDNLLLVAALLSEQGFSKAQVMESLSQLDSVPGRMQAVVAADKPLVIIDYA 353

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          LS +  H  G    V G     G    +   +L   ++     H+ 
Sbjct: 354 HTPDALE-----KALSAVRAHTTGTLWCVFG----CGGDRDAGKRELMGRIADQLADHLV 404

Query: 406 LSGFHVL-----ALKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +        + + + + I  H                      DVV++  K 
Sbjct: 405 VTSDNPRTESPERIIEMIEQGICQHEPAIEADRAAAIRLAIMQASPEDVVLIAGKG 460


>gi|191167747|ref|ZP_03029554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
 gi|190902173|gb|EDV61915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B7A]
          Length = 495

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|260588058|ref|ZP_05853971.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
 gi|260541585|gb|EEX22154.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Blautia hansenii DSM 20583]
          Length = 497

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 162/475 (34%), Gaps = 43/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +K
Sbjct: 8   MKKLADLLEKLEYQCLQGTMDKEITNITFDSRKAEKGCLFFCIKGAVSDGHAYAKDVAEK 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +++V   +        + V  V++   A+  ++ A       K   I ITG+ GKTT
Sbjct: 68  GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167
           T  ++   L +       IG+    IG              +        V+       +
Sbjct: 125 TTYLVKSILENAGHKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVVM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G +   T   +  I + T I P H+   +  ++ A          ++      N 
Sbjct: 185 EVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP-NEHKDFADYLHCKALLFKQCKVGIFNA 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + +           + +FG S+ AD +    K  + +  + +    K +      
Sbjct: 244 DADHLDEILE----GHTCQVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNFPVE 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I    A ++  +L  +++      T           + +G+     ++  F  +ID ++N
Sbjct: 300 IDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKGRIEMVKVSDEFTLMIDYAHN 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A      +  S+L+ +  +   R + + G     G  S+    ++ EV        +  S
Sbjct: 360 A-----MSLESLLTTLKEYKPNRLVCLFG---CGGNRSKLRRYEMGEVSGKLADLTIITS 411

Query: 408 G-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++          +  Y E         +       GD+VV+  K 
Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTNGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKG 466


>gi|212635037|ref|YP_002311562.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella piezotolerans WP3]
 gi|212556521|gb|ACJ28975.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella piezotolerans
           WP3]
          Length = 488

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 156/472 (33%), Gaps = 43/472 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L++ +             N +++DSR++   + F A+ G   DG  +I  A+  GA  V+
Sbjct: 2   LIRDLLAPWFHYSGIEVFNDLTLDSRALKAGDLFVAVPGYQVDGRQYIQAALDNGAAAVL 61

Query: 70  VNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT-TTK 123
           V+TD     G++      +     +   ++ LA  A   S     II +TG+ GKT  T+
Sbjct: 62  VHTDSPEEHGNISTDDGLLISFFQLNRQVSVLAAQAYPLSSKRPKIIGVTGTNGKTSVTQ 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMS 170
            +  +     K+T       N   G  +       D    I               + +S
Sbjct: 122 LIAQLQQLQSKQTAVMGTLGNGLWGELVDSGNTTADAITLIKQLQNFEKSHADTCAMEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     V   +AV T ++  HL     +E   +AK  +F        +    D  
Sbjct: 182 SHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMEAYGAAKQRLFTFSSLRAGLINCDDAI 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L   +    +   +S   +  AD   ++           +       ++    +G 
Sbjct: 242 GASWLAQATSTKTL--GFSIKGNTKADIYAKQCLYHDGGVTCTLVWPEGEAKLQSPLLGD 299

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N++  LG + ++  D+   ++  S   P  GR +R+  + N         + +A  
Sbjct: 300 FNLSNLVAALGALYLVGEDMAAIVRLASALTPVAGRMERFTTSGNVTLVVDYAHTPDA-- 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L  +  H +     + G     G    S    +    +     HV ++  +
Sbjct: 358 -----IEQALQALRVHCKSELWCLFG----CGGDRDSGKRPMMASSAEQFADHVMVTSDN 408

Query: 411 VLA------LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +      + D          ++           + +    GD+V++  K 
Sbjct: 409 ARSENPEDIIADVFSGFTEPQKAQSQVNRKTAIREVVALAKPGDMVLLAGKG 460


>gi|33860970|ref|NP_892531.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|46576938|sp|Q7V2Q8|MURE_PROMP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639702|emb|CAE18872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 511

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 149/480 (31%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHRLLDLVGIIPSLDLIDKEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++ +     IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKQKIGSIDRERILVIEDNLDYIFGQIVSEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G             ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVDAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225
           +S     +          A+ T +   HL   S +E     K          +K G   L
Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLKDKDGISVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N+DD +   L     K  +L    I       +  F +   +     S        + ++
Sbjct: 246 NHDDLWISKLSSDLEKRSSLVSTKITKSEFKNDGFFYVTDKQFTESGSTCIFHTPKEKIK 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++     N    +L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNNDVSRSLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    +G+ I V G     G         L   ++     
Sbjct: 366 IVIIDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDRSKRPLMGSIAEEFSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV+++  +            +   + +   + +                  D+V++  K 
Sbjct: 421 HVFITSDNPRSEEPQQIVNDILMGIEKREKITFDIDRFKAINESIKFANKEDIVLIAGKG 480


>gi|152968670|ref|YP_001333779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|150953519|gb|ABR75549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 495

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/478 (13%), Positives = 139/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A  G +     +PV  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + ++        E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K+ +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKSAARLQPVCGRMEVFSAPGKPAVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|49185422|ref|YP_028674.1| Mur ligase family protein [Bacillus anthracis str. Sterne]
 gi|227814596|ref|YP_002814605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|254685158|ref|ZP_05149018.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254737609|ref|ZP_05195312.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743210|ref|ZP_05200895.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254751924|ref|ZP_05203961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254760444|ref|ZP_05212468.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|49179349|gb|AAT54725.1| Mur ligase family, catalytic domain, N-terminal [Bacillus anthracis
           str. Sterne]
 gi|227007554|gb|ACP17297.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
          Length = 401

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 130/397 (32%), Gaps = 41/397 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161
           GKTTT  +L   LS        +G+    +G                          + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEK 219
           + + E+    L   R      +  IAV T +   HL      +E    K+      G   
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +         +  +        +    + ++G    AD Q +      +     V     
Sbjct: 232 STIDKKIAVLNADDPSVEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNG 291

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +EV  + +G     N L  + +  +    +     +LS     EGR +      +    
Sbjct: 292 EIEVSLNLVGRFNVYNALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVI 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                + +A         +VLS I    +G+ I V G
Sbjct: 352 VDYAHTPDA-------LENVLSTIREFAKGKIITVFG 381


>gi|82775492|ref|YP_401839.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae Sd197]
 gi|309787239|ref|ZP_07681851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81239640|gb|ABB60350.1| meso-diaminopimelate-adding enzyme [Shigella dysenteriae Sd197]
 gi|308924817|gb|EFP70312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 495

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALTTLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|200389058|ref|ZP_03215670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199606156|gb|EDZ04701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 495

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEAADGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|126649754|ref|ZP_01721990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
 gi|126593473|gb|EAZ87418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. B14905]
          Length = 513

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 75/479 (15%), Positives = 151/479 (31%), Gaps = 58/479 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+       G   +  + G+   ++++ P + F   KG    G  F+  A+ +GA 
Sbjct: 27  LAELLKDWPCSVTGGSIRTEITGVEDYAQAVRPGDIFIVRKGKKTSGSRFVKEALARGAA 86

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTT 122
            +V    +   I    IP   V +    L     KLA         ++IAITG+ GKTT 
Sbjct: 87  AIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAA--FPAEALSVIAITGTNGKTTV 144

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFG 163
              ++  L+++ K  A IG+   ++                     P+    +   V   
Sbjct: 145 SHFVSQLLNALHKKAAVIGTIGFYLDGEKQQTSYEELTTLQAKELHPILKQCVRKGVSHV 204

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S +G  +           V   ++  HL +  G+E    AK  + +  +K    
Sbjct: 205 VLE--ASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLN 262

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +       +   K          SFG   + D  ++   +   ++ + +Q       +
Sbjct: 263 GDDNFCRSVGIYDKK-------KSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHII 315

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +  QN +  L  V  L   +D  ++ +      EGR ++    +    +    
Sbjct: 316 EIPFVGKYHVQNTVAALMAVWRLGTPMDDIVEHMWSLRLPEGRLEKIDNPVGIDVYVD-- 373

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y     +++A +                V       G             ++      
Sbjct: 374 --YAHTAEALQAVLQTFD-----RSKTIYLVFS----CGGNRDKAKRFAMGAVASKYADV 422

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++L+  +            +        +               +    GD+V+V  K 
Sbjct: 423 IYLTTDNPRDEDPIIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKG 481


>gi|170768391|ref|ZP_02902844.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
 gi|170122495|gb|EDS91426.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia albertii TW07627]
          Length = 495

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPSRALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +          +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINSNCHGRWLKAIEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|78778793|ref|YP_396905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
 gi|78712292|gb|ABB49469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 511

 Score =  123 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 148/480 (30%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++ +     IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKEKIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G     +       ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLLNRWPGFSEVALHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225
           +S     +          A+ T +   HL   S +E     K          EK G   L
Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLNEKDGICVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N+DD +   L     K   L    I       +  F +   K     S        + ++
Sbjct: 246 NHDDHWISKLSSDLEKRSLLVSTKITESEFESDDFFFVTDKKFTEIGSTCIFHTPREKIQ 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDNNDVSRSLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    EG+ I V G     G         L   ++     
Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEEFSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++++  +            +   + +   +                    D+V++  K 
Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFAKKKDIVLIAGKG 480


>gi|118594407|ref|ZP_01551754.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
 gi|118440185|gb|EAV46812.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylophilales bacterium HTCC2181]
          Length = 477

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/448 (14%), Positives = 152/448 (33%), Gaps = 35/448 (7%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
             ++++S+ +     F AI G  +DG D+I  A++  A  V+  +   +   + ++P FG
Sbjct: 13  KDLTLNSQDVKKGSIFIAIVGLEFDGRDYIEEAIKNEASAVIYESANYSKNKAWNVPSFG 72

Query: 88  VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT--------Y 137
           ++++   + ++A            +I +TG+ GKT+    L    SS+ ++         
Sbjct: 73  IENLNQKIAEIAELFFQNPSQSIKVIGVTGTNGKTSVVGWLQQCFSSLNQSAGSIGTLGS 132

Query: 138 ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                       P       +             + +S     +     +   I V+T +
Sbjct: 133 GEKNLKKTLNTTPDTIALNRILNDFKKKGIQYAAMEVSSHAIKQNRIANIVFDIKVLTNV 192

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +      K + F   E    I    D    ELL     +     + ++  
Sbjct: 193 TRDHLDYHKTLANYQKIKKQFFSDGECKNFILNIDDCIGQELLMEVDWSEK--NLTTYAI 250

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
              AD   +       +   ++  + K+  +  +  G H   N+L  +G +      +D 
Sbjct: 251 DVQADLIAQNIVYKDRKMMFDLLYKDKAYNLSTNVFGTHNVYNILGVIGCLLTYQFSIDQ 310

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            IKA+ +     GR +  + +       ++D ++  +        +VL  +    +   I
Sbjct: 311 IIKAIELLKSIPGRNEIIQVSKEGWPRVVLDYAHTPDA-----LKNVLQSLRAISDNEII 365

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIHVHYS 427
            + G     G            +++      V ++  +        +   + ++I   + 
Sbjct: 366 LLFG----CGGNRDKGKRRKMALVANEYADKVIVTTDNPRYEDPLEIIKDITKNITTSHV 421

Query: 428 --ETMDGLFLFIQSSLVDGDVVVV--KS 451
             E+ +         + +  ++++  K 
Sbjct: 422 VIESREQAIKKAIGMMEENSILLIAGKG 449


>gi|310658896|ref|YP_003936617.1| UDP-n-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii
           DSM 519]
 gi|308825674|emb|CBH21712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium sticklandii]
          Length = 516

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 78/460 (16%), Positives = 153/460 (33%), Gaps = 37/460 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI+  S  +   + FF IKG   DGH ++L A  KGA   VV +       ++ I
Sbjct: 23  DHNIQGIAYHSAKVKEGDLFFCIKGYKTDGHKYLLDAKNKGAVGAVVESI----QDNIDI 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P + V D   +L   A            +I IT + GKTTT  M+   L +       +G
Sbjct: 79  PQYLVSDARHSLALCACNFYNHPSKFMKMIGITATNGKTTTAFMIDNILENNNFKTGLVG 138

Query: 142 SYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           +    +G               +   + RM  +    +  + +S           +   I
Sbjct: 139 TVLIKVGDEQIASDLTTPESLDLQNYIYRMKENGLTHVT-MEVSSSAIELDRIAGIDYDI 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA----L 242
            +   I+  H+      E   + K+ +    +K     LN D      L  K+ A     
Sbjct: 198 VIFNNISREHIDLHETFENYVALKSSLITNAKKGSWAILNMDCEEAASLVNKTEANVLTY 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           G+    +    KN D    + K   E     S        +S E+     GYH   N + 
Sbjct: 258 GVNNDNAMILCKNLDLSSGRGKFTVEISKLFSINGYLYMNQSFEISLSVPGYHSVYNAMA 317

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN--PASMKAA 356
            +    I    +D   ++   F   E R +       +        + N +    ++   
Sbjct: 318 AIAAALICKVPIDVIQESFLNFKGVERRFEFIYENDFKIIDDHFANAGNIDVTMETLNFM 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----WLSGFHVL 412
                 +     G R  ++ +      ++ +  ++L+E+++  +  +      ++     
Sbjct: 378 KYNKLHLVYAIRGSRGPIVNNENAQAIVTWAKKLNLSEIIATKSADYTTEKDIVTDEEEA 437

Query: 413 ALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              + +  S   +   E +        +   + DV+++  
Sbjct: 438 VFSEIINSSKLKLELYEHLSDAIGEALNRAKEDDVILLAG 477


>gi|242278172|ref|YP_002990301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121066|gb|ACS78762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio salexigens
           DSM 2638]
          Length = 486

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 85/450 (18%), Positives = 145/450 (32%), Gaps = 44/450 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +  DSR +   + F AI GP  DG DF+  A++KGA  +V   ++      L        
Sbjct: 24  VQTDSREVREGDVFVAISGPLSDGADFVPQALEKGAAYIVCEKEVETGSAEL----ISHP 79

Query: 90  DVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
               AL +LA+       SK  ++ ITG+ GKTTT  ++   LSS       +G+ +   
Sbjct: 80  SPREALGELAMTYFKTADSKIKLVGITGTNGKTTTTYLIEQLLSSAGMKVGVLGTVSYRW 139

Query: 148 GVPLTLARMPVDVDFGIFELGM--------------SHLGEIRFLTHLVRPHIAVITTIA 193
                 A +     + + E+                S     +     ++   AVIT + 
Sbjct: 140 PGYEQEAPLTTPGCWQLHEMLAKMDEAGVDVAVMEVSSHALHQNRVCGLKFDAAVITNVT 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKT-GTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             HL     +EE   AK  +F+          +N+DD F   L           + +   
Sbjct: 200 QDHLDYHGDMEEYFKAKCMLFQHYPSALKRGIINFDDPFGRRLLECYSPAIGYGMDASCA 259

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +              +   +++   G+  E+    IG     N+L    I   +      
Sbjct: 260 TGCKSLCGEMVSCTGDGMRLKMTCDGEQWEIETDLIGKFNGSNLLAAQAIGLHMGLTPKQ 319

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                  F    GR +R R       F      Y   P ++   +  L  +  +     I
Sbjct: 320 M-NVFKEFDGVPGRLERVRNDQGLNIFVD----YAHTPDALDNVLRTLKDLDFNK---VI 371

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDA---LPRSIH 423
            V G     G         L    +        L+  +      +  + DA   L    H
Sbjct: 372 TVFG----CGGDRDRAKRPLMAEAACRYSDVAVLTSDNPRTEDPMQIIDDARPGLKGCDH 427

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V              + + + DV+++  K 
Sbjct: 428 VIEEVDRADAIRKAVAEMTEDDVLLIAGKG 457


>gi|323464916|gb|ADX77069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase
           [Staphylococcus pseudintermedius ED99]
          Length = 494

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 141/474 (29%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I    +       VN I+ DSR       F A KG   D H F    V++G
Sbjct: 1   MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
             +VVVN    A      +    V D L   + L          + T I +TG+ GKT+ 
Sbjct: 61  CQIVVVNR---ALELQGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169
             M+      +                         P T+       +            
Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVI 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++      ++G  + A F      +  +    +      +  V    I
Sbjct: 238 INADDPFSTYLKSVTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYI 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V +  A ++T  K ++   P           L     +L  +    
Sbjct: 298 GRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V S     +V  + 
Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H  Y E                 GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVL-ASKG 458


>gi|319892003|ref|YP_004148878.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317161699|gb|ADV05242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 494

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 78/474 (16%), Positives = 141/474 (29%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L   I    +       VN I+ DSR       F A KG   D H F    V++G
Sbjct: 1   MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKGYTVDSHRFAQDVVEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
             +VVVN    A      +    V D L   + L          + T I +TG+ GKT+ 
Sbjct: 61  CQIVVVNR---ALELQGDVTQVIVPDTLRVASHLVHHLYGFPSKQLTTIGVTGTNGKTSI 117

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169
             M+      +                         P T+       +            
Sbjct: 118 ATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLTKKIHEAVEAGAEAMTLE 177

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGQDLSRDKYVI 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++      ++G  + A F      +  +    +      +  V    I
Sbjct: 238 INADDPFSTYLKSVTPYESLTYGIEQEAQFMATNIHESLQGVTFDFVTPFGTYPVRSPYI 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V +  A ++T  K ++   P           L     +L  +    
Sbjct: 298 GRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V S     +V  + 
Sbjct: 351 YAHTADGMAKLIDAVEPFVKQKLIFLVG-MA--GERDLTKTPEMGRVASRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H  Y E                 GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGDTVVL-ASKG 458


>gi|294497550|ref|YP_003561250.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
 gi|294347487|gb|ADE67816.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus megaterium QM B1551]
          Length = 469

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 99/459 (21%), Positives = 188/459 (40%), Gaps = 30/459 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDS--RSIAPQEAFF-----AIKGPHYDGHDFI 57
           +T +++L+   G          +   +I+   + I      F      I+G       + 
Sbjct: 4   FTLNEILKQTGGDLCYGSGNPVIKH-AINYAKKDIEDHTLIFHLDREPIRG------KYW 56

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
                  + +V+ +   + +    +I +     +  A  K     R      +I +TG+ 
Sbjct: 57  KE---NHSIVVITDHPELCTNLEGNIILVKTAQLEEAYWKFIEYYRGLFDLPVIGVTGTC 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTTKEM+   L    K  A   S N+       L  +    +  +FE+ +++ G ++ 
Sbjct: 114 GKTTTKEMIRQILIEDYKVKATWMSMNSMSVNLRYLTGIDDTTEVAVFEMPVAYPGYLKV 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                +P I ++  I   HL++    EE   AKAEI EGL+    I +   D   E +K 
Sbjct: 174 ACRYFQPQIRILLNIGVHHLADCETPEEYMKAKAEIVEGLDPNSGILILNADD--ENIKR 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 ++ +   GK  ++ FQ +  K         ++ Q K  +    G G H   N L
Sbjct: 232 VLDVSHLQGVVYIGKGDDSQFQAKDIKYAKGGMAFTLKYQNKEYDAFIPGYGEHNVYNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  V  +  D+  AI+ LS+F   E               T+I++++N++P SM  A+
Sbjct: 292 AAIAAVFYVGVDISVAIQRLSLFEQVEE---HLEFKRGLNECTVINDTWNSSPLSMATAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGE--LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            VLS +S   +   IA+LG M ++GE   +   + D+ +  +   I  + + G    A+ 
Sbjct: 349 GVLSDMSKEKQS--IALLGYMPQLGEGPYAIKQYEDMGKKAAESKIDILVVVGDEAKAIG 406

Query: 416 DALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +       V++ +T D ++  +   L +  ++++K
Sbjct: 407 TGALKCGMDPNKVYFCKTGDEVYNVLAPYLNENTIILLK 445


>gi|314933217|ref|ZP_07840582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
 gi|313653367|gb|EFS17124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus caprae C87]
          Length = 494

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H+F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAREGSIFVASKGYTVDSHNFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELELEGE---VTQVIVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +    +             +   +   +        + 
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDANAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +         
Sbjct: 178 VSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G    A F  +   +  +    ++        V    +
Sbjct: 238 LNNDDEFSHYLASVTPYEVFTYGIDNEAQFMAKNINESLQGVEFDLSTPFGDYRVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V    A ++  I A++   P           L     +L  +    
Sbjct: 298 GRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 351 YAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIRHAIEVAEPGDTVVL-ASKG 458


>gi|323699050|ref|ZP_08110962.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp. ND132]
 gi|323458982|gb|EGB14847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans ND132]
          Length = 507

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 79/460 (17%), Positives = 139/460 (30%), Gaps = 52/460 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---VNTDMVASIGSLSIPVF 86
           +  DSR I   E F A+ G    G D+I +A+  GA  +V      D+VA +        
Sbjct: 33  VRTDSRKIQDGECFVAMPGTAVRGLDYIPNALDNGARYIVAPEAARDLVAPVVEKKAVAV 92

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            VD+   AL +LA A          ++AITG+ GKTTT  ++   L+S       +G+ N
Sbjct: 93  YVDNPAVALGELARAHFQVMDRDLKLVAITGTNGKTTTSYIIEHLLASSGLKVGVLGTVN 152

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
                 +  A +     + I E              + +S     ++    +    AV T
Sbjct: 153 YRWPGFMMDAPLTTPDCWMIHELLFNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVFT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK---- 245
            +   HL     +E    AKA+   E         LNYDD +   L A+           
Sbjct: 213 NLTQDHLDYHGDMETYFRAKAKLFSEYPRLNKAAVLNYDDPYGRRLLAECQGGIGYGIGD 272

Query: 246 ---TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                   G       ++        +     + +   +     G    +       +G+
Sbjct: 273 ASLVRQEVGDKPLVQGRILSMTGQGMEIETSWKGKTWVVRSPLVGSFNALNLLAAQAVGL 332

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L       +        +  R    +       +    ++ +          +V   
Sbjct: 333 QLGLNCKDMRRLSTFPGVPGRLERVMNDKNLDIFVDYAHTPDALD----------NVQRT 382

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD- 416
           ++     R I V G     G         L    +        L+          A+ D 
Sbjct: 383 LAALDFKRLITVFG----CGGDRDRTKRPLMAASAARYADVAVLTSDNPRTEDPAAIMDD 438

Query: 417 ---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               L  +  V  +           + +  GD +++  K 
Sbjct: 439 ARPGLAGAKRVMENPDRTEAIKMAVAEMEPGDALLIAGKG 478


>gi|194439405|ref|ZP_03071482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|253774885|ref|YP_003037716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254160207|ref|YP_003043315.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|194421664|gb|EDX37674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 101-1]
 gi|242375921|emb|CAQ30602.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|253325929|gb|ACT30531.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972108|gb|ACT37779.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli B str. REL606]
 gi|253976317|gb|ACT41987.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Escherichia coli BL21(DE3)]
 gi|323960031|gb|EGB55677.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H489]
 gi|323970757|gb|EGB66011.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli TA007]
          Length = 495

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|329766806|ref|ZP_08258336.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
 gi|328839317|gb|EGF88899.1| hypothetical protein HMPREF0428_00033 [Gemella haemolysans M341]
          Length = 498

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 92/474 (19%), Positives = 167/474 (35%), Gaps = 32/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D++  I+  +I       VN IS DSR I   + F AIKG   DGH+FI   +++G
Sbjct: 1   MNILDIIDNIKIKTIYGKLPDSVNSISQDSRKIGKGDVFVAIKGYTVDGHNFIEKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++ + ++ V    ++    + +A      +    +A+TG+ GKT+   
Sbjct: 61  AALVIASRYENYNVENCAVLVVREHEIEKIASMIAKKINEGADIHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169
           ++   L ++ ++ A I    +  +   P+       DV      I EL            
Sbjct: 121 LVHNMLRNLGESSAYIGTNGFGKNDDEPIYFGNTTPDVVTLHNQIGELRHENIKNLAFEA 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228
           S         + V   +A+ T +   HL     ++  A  K+ +F  L    +       
Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKFGVL 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +      K  S  L  + I    K + ADF     KQ  E    +     KS E      
Sbjct: 241 NKDDSYYKIISKCLYQQEINYSIKDETADFYAYNIKQFKEDKIYKTSFTLKSPEGTFECT 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++   M+  +            +++ L    PK G        L       I   +  
Sbjct: 301 TNYIGDFMVSNVLAALSAVWVKGYSVEQLVNILPKLGALYGRMEILGDDLPIDIISDFAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P   +  +    +I    +G+R  ++  M   G    S    + E++S     +V ++ 
Sbjct: 361 TPDGYEKLLEATREIR---KGKRTLLVTGMG--GGRDISKGPLIGEIISEA--DYVVITT 413

Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V  L  ++ + +     E           I      GDVV++ +S  
Sbjct: 414 DSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSKPGDVVIL-ASKG 466


>gi|327404195|ref|YP_004345033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
 gi|327319703|gb|AEA44195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fluviicola taffensis DSM 16823]
          Length = 486

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 161/476 (33%), Gaps = 47/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T ++L +A +           V+ +  DSR       F A+KG   D HDFI   ++K
Sbjct: 1   MKTVNELAKATEITQWIGPTDVVVSALVSDSRKALAGTLFIAVKGTQVDAHDFISQVIEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G  ++V    +        + V  V +   AL +LA A          ++ +TG+ GKTT
Sbjct: 61  GCRVIVAERVIEVPEH---VTVLVVPNSALALGELAHAFYDYPSRSLELVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI--------------FEL 167
           T  +L    + +      + +  N IG  +  +         +                +
Sbjct: 118 TTTLLHDLYTELGYKVGLLSTVVNLIGKEVIPSTHTTPDQIALNALLADMVDQGCSHCFM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +     +       T I   HL      +E  +AK   F+ L+K     +N 
Sbjct: 178 EVSSHAISQHRIAGLVFKGGAFTNITHDHLDYHGTFKEYIAAKKTFFDELKKDAFALVNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A       +FG   +ADF+     +  E S+  + L    +E+    
Sbjct: 238 DDKNGMVMVQNTKAKVS----TFGLKTHADFK----AKVLENSFSGLLLTINGIELWTRL 289

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N+    GI  +L +D    +  LS     +GR +  +   +          Y 
Sbjct: 290 IGDFNAYNIATVYGISQLLGSDSTEVLTVLSKLEAVDGRFQFTKSETDITAVVD----YA 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  +  I    E     V       G+       ++A +    +   +  S
Sbjct: 346 HTPDALENVLKTIENIRTRNEQVITVV----GCGGDRDALKRPEMARIACELSNKVILTS 401

Query: 408 G----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +   +  H S         D       S     D++++  K 
Sbjct: 402 DNPRTEDPAEILKQMEAGVGAHQSMKVLTILDRDQAIKTAVSLAQPKDIILIAGKG 457


>gi|238893065|ref|YP_002917799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae NTUH-K2044]
 gi|238545381|dbj|BAH61732.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 495

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/478 (13%), Positives = 138/478 (28%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A  G +     +PV  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAIIAEAQGEAKDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + ++        E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|212551096|ref|YP_002309413.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549334|dbj|BAG84002.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 471

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/464 (17%), Positives = 145/464 (31%), Gaps = 48/464 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +    +  ++G+  DSR I     F AI G   DGH  I  +++ GA  ++  T  + 
Sbjct: 2   RLVFEGKELSLSGVHSDSRKIKAGYLFVAIVGTQMDGHSCIEKSIKNGAKTIICQT--LP 59

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
                 +    V D   AL ++          K  +I +TG+ GKTT   +L      + 
Sbjct: 60  VTLRPDVTYICVKDSAKALGQIVSLWNGEPSKKLRLIGVTGTNGKTTVTTLLYRVFRKLG 119

Query: 135 KT---YACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFELGMSHLGEIRFLTH 180
                 + I +  N   VP T                V        + +S     +    
Sbjct: 120 YKVGLISTICNCINDRIVPTTHTTPDVIELNTLLVQMVSEGCDYVFMEVSSHAIDQKRIA 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++    + T +   HL      +     K   F+ L        N DD     +   + 
Sbjct: 180 GLQFKGGIFTNLTRDHLDYHKTFDIYRDVKKTFFDLLPTGAFALANKDDKNGAFMLQNTK 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A        +     ADF+ R  +     + M +  +    E+    +G   A N+L   
Sbjct: 240 AHKK----FYSLQSLADFKSRILESHFNGTLMTINDK----ELSTLLVGKFNAYNLLAIY 291

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G   +L  + D  +  LSV  P  GR +    +            Y   P ++   ++ +
Sbjct: 292 GTAILLGQNSDEILVLLSVLRPVIGRFETLNASRGFTVIVD----YAHTPDALINVLNTI 347

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHV 411
           ++I    +G+ I V+G     G         +    ++     V L+         G  +
Sbjct: 348 NEI-LARKGKIITVIG----CGGNRDKGKRSIMAREAVRLSQKVILTSDNPRFEEPGDII 402

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +   L                            D+V++  K 
Sbjct: 403 EDMLAGLDDIQQKETICIVDRKEAIRTACLLAQPNDIVLIAGKG 446


>gi|229524392|ref|ZP_04413797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
 gi|229337973|gb|EEO02990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae bv. albensis VL426]
          Length = 499

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 149/456 (32%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G     
Sbjct: 29  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L  +    A +
Sbjct: 89  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148

Query: 141 GSY-----------NNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+             N  G  L +     D          L  S  G ++     +    
Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAEHGAQYTALETSSHGLVQGRVKKLHFVA 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV-- 266

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S     N    +   +    +S + +  +    E   H           + L + ++L
Sbjct: 267 --SLVAKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLL 324

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +   + +    +    +   G+       Q    ++D ++  +          L  +  H
Sbjct: 325 SLGFEKSALLATAPKLRPVLGRMELFQREQKAKIVVDYAHTPDALE-----KALRALRVH 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 436 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|218547542|ref|YP_002381333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia fergusonii ATCC 35469]
 gi|218355083|emb|CAQ87690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
          Length = 495

 Score =  123 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|224531957|ref|ZP_03672589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
 gi|224511422|gb|EEF81828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Borrelia
           valaisiana VS116]
          Length = 508

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 155/475 (32%), Gaps = 55/475 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            DL++ ++G          ++GI+  S+ + P   FFA+ G H+DGHDFI  A+Q G+ +
Sbjct: 14  QDLIKYVKGSL-----DLEISGITYSSKLVLPGFVFFALSGIHFDGHDFIEIAIQNGSNV 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +V + D+     + ++    +DD  +   ++  +         K  +I +TG+ GK++  
Sbjct: 69  IVCSRDL--DFYNPNVTYIKIDDFNIKKFMSNFSNIFYDEPSKKLKVIGVTGTDGKSSVC 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGI 164
             + + L         I +     G    +                         V + I
Sbjct: 127 YYIYLLLRKKGVKVGFISTVFFDDGNGNLIKNPYRQSTPESTEIHLFLSNMVKNKVQYAI 186

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L         V    AV T I   HL     I+   + K  +F  +       
Sbjct: 187 LESTSHGLDLETARLIDVNYFAAVFTNIGHEHLEFHGTIQNYLNVKLGLFRAVSDDAGFG 246

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +   D F+      +            K+  ADF +    + ++ +  E   +G      
Sbjct: 247 VINLDDFYSYDFKNAIKKS---FTYSLKNSQADFFVSFINEKTDSTEFEFYHKGVKYFAN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G    +N++  L +VS +       I   ++   K   G+     L Q F  +ID 
Sbjct: 304 VNLLGSFNVENVMAALILVSKILNSDIQDIV-DNLSCIKSLDGRMDSINLGQNFSVIIDY 362

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++     S      +          R I+V G   E           L   +S      +
Sbjct: 363 AHTPGAFS-----KLFPIFKKFTTNRLISVFGSAGE----RDFAKRFLQGQISDSYSDLI 413

Query: 405 WLSGFH---------VLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447
            L             +  +   +   +    + +            S    GD++
Sbjct: 414 VLCDEDPRGENSMCIIKDIAKGIVNKVANQDLFFIPDRKQAIEKAISLARAGDLI 468


>gi|218703345|ref|YP_002410864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UMN026]
 gi|293403157|ref|ZP_06647254.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298378687|ref|ZP_06988571.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
 gi|218430442|emb|CAR11308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291430072|gb|EFF03086.1| hypothetical protein ECGG_03453 [Escherichia coli FVEC1412]
 gi|298281021|gb|EFI22522.1| hypothetical protein ECFG_03650 [Escherichia coli FVEC1302]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L   S A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLSDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLSDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|323491034|ref|ZP_08096226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
 gi|323314698|gb|EGA67770.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio brasiliensis LMG 20546]
          Length = 494

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 139/480 (28%), Gaps = 43/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL      S        V  + +DSR +     F AIKG   DG  FI  A
Sbjct: 1   MSKELTLATLLAPWLDISTDESANVVVERLELDSRKVTQGTTFVAIKGHAVDGRRFINSA 60

Query: 61  VQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++ GA  ++              S  + +  +D +   L+ LA      S   +I +TG+
Sbjct: 61  IELGANAIIAEACELHPHGKVERSSGVSIVYLDQLAQHLSALASLLYPLSDNKLIGVTGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTY--------------ACIGSYNNHIGVPLTLARMPVDVDF 162
            GKTT  +++   L  I                      +   +                
Sbjct: 121 NGKTTITQIMAQWLDLIGHKAAVMGTTGNGFLADLQPAANTTGNAIEIQQTLHQLQQQGA 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L +S  G ++     +   + V + ++  HL     +EE A AK  +F+       
Sbjct: 181 QYTALEVSSHGLVQGRVKTLPFEVGVFSNLSRDHLDYHGTMEEYAEAKFSLFDQHTCKTA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      +K    A+ +    +                      + +       E
Sbjct: 241 VINIDDQVGASWVKRLDSAIAVSLNPT---DHPRAVWAESVSYSEAGISLVIDGLFGRGE 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG   A N+L+ L  +  L  D    +   S   P  GR + +  +         
Sbjct: 298 FTIALIGEFNASNVLLALTALLALGVDKQQLLDTASSLKPVLGRMELFTASDKAKVVVDY 357

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  G+   + G     G    +    +   +      
Sbjct: 358 AHTPDA-------LEKALKALRVHCHGKLWGIFG----CGGDRDTGKRPMMAAIGEELAD 406

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   +                 +  +   + D++++  K 
Sbjct: 407 KVILTDDNPRSESPAAIVEDMLKGMNEPELAIVEHNRFDALKYALAHSGEQDIILLAGKG 466


>gi|331671604|ref|ZP_08372402.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
 gi|331071449|gb|EGI42806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA280]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|158522802|ref|YP_001530672.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
 gi|158511628|gb|ABW68595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfococcus oleovorans
           Hxd3]
          Length = 529

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 147/480 (30%), Gaps = 65/480 (13%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G++P   +  I   S  + P   F AI+G   DGHDFI  A+ +GA  VV   ++ A   
Sbjct: 23  GVMPDPEIASIHYRSDEVRPGGLFVAIRGSARDGHDFIDQALARGAVAVVAEKEVDA--- 79

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSI---- 133
                   V D   AL  L+        A   ++ +TG+ GKTTT  ++   L       
Sbjct: 80  -RDAVTVRVADARNALALLSAVFYGAPSARLVLVGVTGTNGKTTTAALVEHILVKAGKQV 138

Query: 134 -----KKTYACIGSYNNHIGVPLT-------LARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                         + N +  P +              V   + E+  SH    + +   
Sbjct: 139 GVIGTGNFRYVGRRFKNPLTTPESADLQHILRDMATAGVTHVVMEV-SSHALAQQRVAGC 197

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTIFLNYDDSFFELLKAK 238
               +A+ T +   HL     +E     K  +F G           ++  +      +  
Sbjct: 198 A-FDVAIFTNLTQDHLDFHGDMETYWECKKRLFTGTRSVGVREKHMVSVINCNDARGRGL 256

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              L +      G ++  D   +      +     +      +       G +  +N+L 
Sbjct: 257 FDTLPVPGRMGAGFAEACDIYPKGVTSSPDGLAGTIVTPAGPIPFCSPLAGTYNLENILC 316

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G   +L  +     + +  F    GR ++    + +  F     + +A         +
Sbjct: 317 AAGAGVVLGVEGAAIQEGIETFAGVPGRLEKVADRMGRFVFVDYAHTPDA-------LQN 369

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
           VLS +     GR   V G     G             ++      V ++  +  +     
Sbjct: 370 VLSALRKISAGRLFCVFG----CGGDRDRAKRPKMGGIAATIADRVVVTSDNPRSEDPEA 425

Query: 414 -LKDALPR-SIHVHYSETMDGLF------LFIQS------------SLVDGDVVVV--KS 451
            + D +   +        + GL        ++              +   GD +++  K 
Sbjct: 426 IIADIVKGMTGLAERVADVAGLAGKSSNGRYLVEPDRRLAIRAAVSAAAPGDTILIAGKG 485


>gi|293417961|ref|ZP_06660583.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
 gi|291430679|gb|EFF03677.1| hypothetical protein ECDG_02881 [Escherichia coli B185]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|267991801|gb|ACY86686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGVTFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|258625128|ref|ZP_05720045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
 gi|258582579|gb|EEW07411.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio mimicus VM603]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 153/480 (31%), Gaps = 42/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN      +L+      +   +    ++ + +DSR I   E F AI+G   DG  FI  A
Sbjct: 1   MNTPKALSELIAPWLELADTDLASLAISRLELDSRQIKSGETFVAIQGHAVDGRQFIDKA 60

Query: 61  VQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +GA +V+   D     G +     +PV  + ++   L++LA       +  +I  TG+
Sbjct: 61  IAQGANIVLAEADAHHVHGQVEFREGVPVIYLTELGQHLSELAGRLYGGHQNQLIGATGT 120

Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD--------F 162
            GKTT  +++   L       ++  T               T   + +            
Sbjct: 121 NGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGA 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S  G ++     +     V + ++  HL     ++  A AK  +F        
Sbjct: 181 QYTALETSSHGLVQGRVKKLNFVAGVFSNLSRDHLDYHGTMDAYAQAKFSLFSEHACQRA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D    + +K   HA+GI  +     ++    +    +       ++        E
Sbjct: 241 IINVDDAVGAQWVKQLPHAIGISLLAQPNTAQAIWARQ--VQYAESGITLDFDSSWGEGE 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG   A N+L+ L  +  L  +    +       P  GR + ++           
Sbjct: 299 LHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPQLRPVLGRMELFQREQKAKMVVDY 358

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L  +  H  G+  A+ G     G         +   ++     
Sbjct: 359 AHTPDA-------LEKALRALRVHCAGQLWAIFG----CGGDRDRGKRPMMAAIAEQYAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   L      H          +   +    D++++  K 
Sbjct: 408 RVILTDDNPRSESPQAIVADMLAGLTHPELAHIEHNRFQAASYALQNAGAQDIILLAGKG 467


>gi|30248989|ref|NP_841059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosomonas europaea ATCC 19718]
 gi|46576994|sp|Q82VS8|MURE_NITEU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30138606|emb|CAD84897.1| murE; UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosomonas
           europaea ATCC 19718]
          Length = 521

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/467 (14%), Positives = 137/467 (29%), Gaps = 43/467 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  +  DSR + P + F A  G  +D  + I  A+ +G   ++      +      I
Sbjct: 23  DVKVRHLVADSRKLKPGDTFLACAGERHDARNDIPQAIARGVNAIIWEKQGFSWKPEWKI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P  GV  +     K+A  A         ++ ITG+ GKTT  +    A++++ K  A IG
Sbjct: 83  PNLGVAGLRHEAGKIASEAYGHPSRHLWLVGITGTNGKTTCSQWYAQAMAALGKKTAVIG 142

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPH 185
           +  +  G P  L          ++                 +  S  G  +         
Sbjct: 143 TLGH--GFPGALYPSEHTTPDAVYLQQLMAEYLHQGASSLVMEASSHGLSQDRLIGSEFA 200

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T +   HL     ++  A+AKA++F        +    +    EL +  +      
Sbjct: 201 VAVLTNLTRDHLDYHDSMDAYAAAKAKLFFWEGLQYAVLNLDEVLGVELSQQLAGKDLSI 260

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYHMAQNMLMTL 300
             Y F + +         K     +      Q                      N    L
Sbjct: 261 IGYGFKQPRQTAQTAGNQKILYGSNLQFTTQQIGFDVEFCNRYASLQCNVTGRYNAYNLL 320

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID------ESYNANPASMK 354
            +++ L A       A++     +    R           +I       ++ N     ++
Sbjct: 321 AVLAALLASNIDLDDAITALRQVQPIPGRMEKLGGGNQPVVIVDYAHTPDALNEVLTGLR 380

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
             ++         + +   +   +   G         L   ++      V ++  +    
Sbjct: 381 ETLAGTRIKKRIRKNQAKLIC--VIGCGGDRDRGKRPLIGEIASRLADEVIITSDNPRNE 438

Query: 414 -----LKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                + + +      H                    GD+V++  K 
Sbjct: 439 NPADIISEVMLGASGKHCTSEVDRTAAIYRAIHGARKGDIVLIAGKG 485


>gi|157159417|ref|YP_001461255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209917278|ref|YP_002291362.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218552668|ref|YP_002385581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI1]
 gi|218693554|ref|YP_002401221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 55989]
 gi|293476745|ref|ZP_06665153.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|331666322|ref|ZP_08367203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331680658|ref|ZP_08381317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
 gi|157081447|gb|ABV21155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E24377A]
 gi|209910537|dbj|BAG75611.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Escherichia coli SE11]
 gi|218350286|emb|CAU95969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218359436|emb|CAQ96974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|291321198|gb|EFE60640.1| hypothetical protein ECCG_03068 [Escherichia coli B088]
 gi|323945714|gb|EGB41762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H120]
 gi|324118435|gb|EGC12329.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1167]
 gi|331066533|gb|EGI38410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA271]
 gi|331072121|gb|EGI43457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H591]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|229918676|ref|YP_002887322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229470105|gb|ACQ71877.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 492

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 159/473 (33%), Gaps = 43/473 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL++ IQ  +   +    V  ++ DSR + P   F AIKG   DGH++   AV++G
Sbjct: 7   LNLTDLVKTIQLINQPNLEGIVVTHVTTDSREVVPGTLFVAIKGYTVDGHEYAAQAVERG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----------------- 107
           A  VV    +      LS+P   V D   ++  LA A                       
Sbjct: 67  AVAVVSERSL-----DLSVPNLIVRDSSRSIGLLASAFYAYPSEQMRLFGITGTNGKTTT 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            TI+     V   +T  + T+ +    K      +      +   LA+M  +    +  +
Sbjct: 122 TTILRDVLDVLGHSTGLIGTVEVRINDKIVPSKNTTPQSSELQQLLAQMRDEGVTDVM-M 180

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G            I   T +   HL      E  A AK  +F  L +  +     
Sbjct: 181 EVSSHGLELGRVIGTDFDIVGFTNLTHDHLDFHGTFENYARAKGLLFAQLGQMASRGKVA 240

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  +        +    + ++G    AD      +Q   Q+   +  QG  + V    
Sbjct: 241 VLNADDAQTPLYETMTGAKVITYGIDAQADLMATDIEQTLSQTSFTLNYQGAKLPVTVQF 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N+L+  G +      ++   KAL + HP +GR    +     G+    D ++ 
Sbjct: 301 IGRFNVYNLLLATGCLLAAGYSLERIAKALEMIHPAKGR---MQRLDVPGYNVYADYAHT 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +             +       +  ++  +   G    +    + E+ S Y  + +  +
Sbjct: 358 PDGIE--------QCLKSLVGVPKEKIIFLIGTGGNRDVTKRPAMGEMASTYAGTVIITT 409

Query: 408 GFHVLALKDALPRSI-----HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                   +++ + I     H ++ E    +    +        +++V+  K 
Sbjct: 410 DDPRFEAYESITKGIAAGMTHDNFVEIGDREEAVRYAARLAKPDNIIVLAGKG 462


>gi|193065884|ref|ZP_03046945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|193070831|ref|ZP_03051764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194429350|ref|ZP_03061875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|256020077|ref|ZP_05433942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sp. D9]
 gi|260842321|ref|YP_003220099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|260866238|ref|YP_003232640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|307311464|ref|ZP_07591106.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|332281227|ref|ZP_08393640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
 gi|192926471|gb|EDV81104.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E22]
 gi|192955861|gb|EDV86331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli E110019]
 gi|194412570|gb|EDX28867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli B171]
 gi|257757468|dbj|BAI28965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O103:H2 str. 12009]
 gi|257762594|dbj|BAI34089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O111:H- str. 11128]
 gi|306908443|gb|EFN38941.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli W]
 gi|315059308|gb|ADT73635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|320200396|gb|EFW74982.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli EC4100B]
 gi|323176393|gb|EFZ61985.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323380134|gb|ADX52402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli KO11]
 gi|332103579|gb|EGJ06925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Shigella sp. D9]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|254500735|ref|ZP_05112886.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222436806|gb|EEE43485.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 480

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 85/459 (18%), Positives = 148/459 (32%), Gaps = 36/459 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                    + G++ DSR + P   F A KG   DG  F+  AV+  A  V+  T+   +
Sbjct: 3   LPDTADGLSIEGLTADSRKVQPGFLFAAFKGSTVDGVQFVPKAVEARAVAVLCATNAAEA 62

Query: 78  IGSLSIPVFGV---DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +L  P   V   D+     +K+A     R   TI+A+TG+ GKT+    +     +  
Sbjct: 63  VRALVPPTVAVLSADEPRLTFSKMAARFYGRQPDTIVAVTGTAGKTSVAHFVRQIFQAAG 122

Query: 135 KT-------YACIGSYNNHIGVPLTLA-RMPVDVDFGIFE------LGMSHLGEIRFLTH 180
                            ++ G+      ++  D+     E      L  S  G  ++   
Sbjct: 123 HPAASLGTLGIIKPDGESYGGLTTPDPVQLQKDLADLATEGIRYAALEASSHGLDQYRLD 182

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VR   A  T +   H+     IE+   AK  +F  L   G   +      +        
Sbjct: 183 GVRLTAAAFTNLGRDHMDYHPTIEDYLQAKLRLFSELLPAGGHVVVDPGEKYTDRVLAIA 242

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 +++ G+    D +L   +       + V+      +V    IG     N L+  
Sbjct: 243 EERGLPVFTVGE-TGKDLKLTGLRPSGAGQLLTVETSRGEYKVTLPLIGRFQVSNALIAA 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+      D   A++AL       GR      A       ++   Y   P ++      L
Sbjct: 302 GLAITAGIDAGAALRALENLKGAPGR---LELAGTTPAGGMVFVDYAHKPDALD---KAL 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
           + + P  EG    V+G     G         L    +  +   V ++           ++
Sbjct: 356 AALKPFAEGSLSVVVGA----GGDRDPGKRPLMGEAAARHADLVIVTDDNPRSEDPATIR 411

Query: 416 DA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            A L  +                   L  GD++ V  K 
Sbjct: 412 KAVLAGAPGGLEIGDRAEAIAEGIRRLKSGDILCVAGKG 450


>gi|94970661|ref|YP_592709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
 gi|94552711|gb|ABF42635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Koribacter versatilis Ellin345]
          Length = 509

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 65/467 (13%), Positives = 130/467 (27%), Gaps = 41/467 (8%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
               +       ++G+  DSR + P   F A++G   DG+ +I  A++ GA  +V ++  
Sbjct: 9   GAEILSCSGNAGIHGVEYDSRRVKPGFCFLAMRGDSTDGNRYIDKAIELGAVAIVTDSAT 68

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-----------------V 117
              I    +          AL++L+          +     +                  
Sbjct: 69  --EIPRPGVAWAICAHGRRALSRLSANFYKHPAEKLAITGVTGTNGKTTTTYILDSLLRH 126

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIR 176
               T  + T+      +      +    + +       +       + E+  SH     
Sbjct: 127 AGRKTAMIGTVEYHIADRVIPAPHTTPEPLELNQIFREALNEGATEAVMEV-SSHALAQE 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            +  +    +AV T +   HL     +E    +KA +F+G           +    +   
Sbjct: 186 RVFGIP-YDVAVFTNLTRDHLDFHGTMESYFQSKATLFKGCGTEPPRVGIINRD--DEWA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K   +  K          A             +     L      V            +
Sbjct: 243 EKFMKVANKHCDKVYTYGFAAGDFHAENAEMTSTGTRFDLVTPEGRVPIFSPLIGKVNVL 302

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
            +     + +   +     A S+ H     G+  R +  Q F  ++D ++  +       
Sbjct: 303 NLLAAAAAAMERGIHLDSLAESITHIVRPPGRFERVSAGQPFTVIVDYAHTDDALR-NVT 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
                 +   G GR I + G     G         L    +      V L+  +  +   
Sbjct: 362 KLARDFVQQAGGGRVITLFG----CGGDRDKTKRPLMGKAAGEGSDLVVLTSDNPRSEDP 417

Query: 414 ---LKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              + D LP      I                ++   GDVV++  K 
Sbjct: 418 QAIINDVLPGLAQTPIKFIVEPDRRKAIGIAVANARLGDVVILAGKG 464


>gi|161612467|ref|YP_001586432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|168464325|ref|ZP_02698228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|198245705|ref|YP_002214075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351462|ref|YP_002225263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|207855637|ref|YP_002242288.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|161361831|gb|ABX65599.1| hypothetical protein SPAB_00157 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195633022|gb|EDX51476.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197940221|gb|ACH77554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271243|emb|CAR36031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|206707440|emb|CAR31713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopim ligase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|326626489|gb|EGE32832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 495

 Score =  123 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|323975751|gb|EGB70847.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli
           TW10509]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467


>gi|331650982|ref|ZP_08352010.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
 gi|284919865|emb|CBG32920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli 042]
 gi|331051436|gb|EGI23485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli M718]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEEHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|16763513|ref|NP_459128.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|167989996|ref|ZP_02571096.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168234887|ref|ZP_02659945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737109|ref|YP_002113141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197262729|ref|ZP_03162803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|204926802|ref|ZP_03218004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|21362703|sp|Q8ZRU7|MURE_SALTY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|16418622|gb|AAL19087.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|194712611|gb|ACF91832.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197240984|gb|EDY23604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197291875|gb|EDY31225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323467|gb|EDZ08662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205331379|gb|EDZ18143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245356|emb|CBG23145.1| Meso-diaminopimelate-adding enzyme [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301156751|emb|CBW16226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911092|dbj|BAJ35066.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222302|gb|EFX47374.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|323128443|gb|ADX15873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 4/74]
 gi|332987076|gb|AEF06059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|331661459|ref|ZP_08362383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
 gi|331061374|gb|EGI33337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA143]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|170021559|ref|YP_001726513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ATCC 8739]
 gi|188493001|ref|ZP_03000271.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
 gi|169756487|gb|ACA79186.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli ATCC
           8739]
 gi|188488200|gb|EDU63303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 53638]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|197251914|ref|YP_002145109.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197215617|gb|ACH53014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|82542689|ref|YP_406636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii Sb227]
 gi|81244100|gb|ABB64808.1| meso-diaminopimelate-adding enzyme [Shigella boydii Sb227]
 gi|320183628|gb|EFW58471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella flexneri CDC 796-83]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + ++           +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H IG     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTVPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|291542015|emb|CBL15125.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus bromii
           L2-63]
          Length = 488

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 158/475 (33%), Gaps = 43/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++    G +    ++ I  DSR +    AF  +KG   DGH +   AV+KG
Sbjct: 1   MKLKDLLINVEYTVQGNL-NTEISDIIYDSRKVEKGTAFVCLKGYTSDGHRYAKSAVEKG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V++ D +       + V  V+D   AL+ +++        +   +AITG+ GKTTT
Sbjct: 60  ASALVIS-DSLDFEVPSDVAVVKVEDTRYALSLMSIEFFGHPEDELYTVAITGTKGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELG 168
             M+             IG+     G                    R  ++       + 
Sbjct: 119 TAMVAEIFEHAGIKTGTIGTLGVVYGGETHKTDNTTPESYIIQKSMRDMINAGCKAMVIE 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S +G        +   + + T  +  H+      + +A           +      N D
Sbjct: 179 ASSIGLKHSRLAGMTFDVGIFTNFSDDHIGGVEHKD-LAEYLYCKSLLFRQCKFAAANID 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D  ++ +        +    ++G + NAD + +     SE  ++ V  + + ++ +   +
Sbjct: 238 DPAWKDITKDFKGSVL----TYGFADNADLKGKNAHLLSENGFVGVHFETEGIKNLSVDV 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L  +S ++   +   + +           R         +TLI + Y  
Sbjct: 294 DIPGKFNAYNALAAISAVSFFDEIEDQMIIDALKVAKVKGRVERVPVPYNYTLIID-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWL- 406
           N  SM+  +  L Q +PH        L  M   G         ++ E     +   V   
Sbjct: 353 NALSMENVLETLRQYNPHR-------LITMFGAGGNRPKVRRYEMGETSGRLSDLSVVTE 405

Query: 407 -------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +  +K  L +                +   +  DGD++V+  K 
Sbjct: 406 DNSRFEDVMDIIEDIKTGLAKTDGKYVVVPNRRDAIKYCMDNAEDGDIIVLAGKG 460


>gi|291280910|ref|YP_003497728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|209746600|gb|ACI71607.1| meso-diaminopimelate-adding enzyme [Escherichia coli]
 gi|290760783|gb|ADD54744.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Escherichia coli O55:H7 str. CB9615]
 gi|320658210|gb|EFX25939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663519|gb|EFX30803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|327392719|dbj|BAK10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           MurE [Pantoea ananatis AJ13355]
          Length = 471

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 130/453 (28%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AI G   DG  FI  A+ +G   V+   +  AS G +     +PV 
Sbjct: 2   TLDSRLAAAGDLFVAIAGHQVDGRRFIPQAIAQGVAAVIAEAEGEASDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +  +   L+ LA     +       I  +     T     +A  +              
Sbjct: 62  YLAQLHQRLSALAGRFYQQPGEKQKLIGVTGTNGKTTTTQLLAQWASLLGETSAVMGTVG 121

Query: 147 IGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   L          +                  + +S  G ++     +    AV T
Sbjct: 122 NGLVGQLVPAENTTGSAVDVQHNLDELVRKGASLTAMEISSHGLVQHRVAALPFSAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +++  SAK  +F   +    I    D+     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGDMQQYESAKWLLFSEHQVGVAIINADDEVGRRWLANLPDAVAVTMENNL 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 QPGCHGRWLRATDVNYHDNGAHIRFDSSWGEGEMNSRLMGAFNVSNLLLALATLLALGYA 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  ++A +   P  GR + +              + +A           L     H +G
Sbjct: 302 LDDLLRAAARLQPVNGRMEVFSATGKPTVVVDYAHTPDA-------LEKALEAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   + G     G         L   ++      V ++  +            +   L  
Sbjct: 355 KLWCLFG----CGGDRDKGKRPLMGAIAEQFADIVVVTDDNPRSEDPQAIVQDILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                   D+V+V  K 
Sbjct: 411 PGRARVVAGRAQAVTSTIMQAQPDDIVLVAGKG 443


>gi|156741219|ref|YP_001431348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
 gi|156232547|gb|ABU57330.1| UDP-N-acetylmuramyl-tripeptide synthetase [Roseiflexus castenholzii
           DSM 13941]
          Length = 515

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 137/489 (28%), Gaps = 57/489 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            HDLL+ +   +        +  I  DSR++ P   F A +G H DGH +I  A+++GA 
Sbjct: 5   LHDLLRTLCDPAHLPRANPAITAIVYDSRAVMPGALFVAYRGFHTDGHLYIPQAIERGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAI----------- 113
            VV      A  G + +P     +   AL  LA A       +  ++ I           
Sbjct: 65  AVVYEDP--AWDGRIPVPALRTPNARAALAPLAAAFYGYPGRQMRVVGITGTDGKTTTTF 122

Query: 114 ---TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL----ARMPVDVDFGIFE 166
                         ++      I        S  +    P         +     + + E
Sbjct: 123 LTSVALEAGGAVTGLMGTVDFKIAGRLWANDSRQSTPEAPEVQALLRDMVHAGCAYAVVE 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L             IAV+T +   HL     +E+    KA +FE L +       
Sbjct: 183 ATSHALSARWNRLAGCAFDIAVLTNVTQEHLDFHGTVEQYRRDKARLFEMLAEFHDDATP 242

Query: 227 YDDSFFELLKAKSHALGIK--------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +      ++ A      +            ++    NAD   R  +   +     V    
Sbjct: 243 FKQRKIAIVNADDPNHRMFLDAAPPYAERLTYAIHANADVCARNVRSTRDGLMFRVTTPW 302

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + +      G     N L  L +       +   + AL       GR +R         
Sbjct: 303 GAADAHLRLTGDFNVWNALAALTVACAEGVPLSVCLAALERVPGVRGRMERIEMGQPFTV 362

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 +  A          ++  + P  +G+ I V G   E           L   ++ 
Sbjct: 363 LVDYAHTPGA-------FEKLMRIVRPLTDGQLIVVFGSAGE----RDRAKRPLQGEIAG 411

Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDG 444
                V L+          A+   +   +                         +    G
Sbjct: 412 RFCDLVVLTDEDPRLEDREAIIAEIAVGVEAAGKRIGETCLCIPDRAHAIRTAFARARPG 471

Query: 445 DVVVV--KS 451
           D+V++  K 
Sbjct: 472 DIVLLLGKG 480


>gi|83596046|gb|ABC25404.1| UDP-MurNAc-pentapeptide synthetase [uncultured marine bacterium
           Ant39E11]
          Length = 364

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 165/380 (43%), Gaps = 27/380 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           V+ V + L +L +LA A R+    T+I +TGS GKTT KE+    LS     +A  G++N
Sbjct: 12  VYKVVNALTSLQELAHAHRMNWGGTLIGLTGSNGKTTAKELFRSVLSQSFNVHATDGNFN 71

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           NHIG+PLTL  +    +  + E+G +H GEI  LT +  P I  IT    AHL  F G++
Sbjct: 72  NHIGLPLTLVGLKKSHEVAVIEMGANHRGEIASLTAIAAPDIGYITNFGQAHLEGFGGVD 131

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +   K E+++ L   G   L  D    ++                 +    +       
Sbjct: 132 GVIQGKIELYQWLTSHGKPSLVNDSDPLQI-----------------EHAGNNKLPSSKD 174

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +     V +         H +G   + +++ ++ +   +    +   K +  + P  
Sbjct: 175 VVCQSKDQGVHVTIGDTRAQSHLVGDFHSGSLVASVNLGRYMGMADEAIAKGIEAYIPSN 234

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            RG+     L      +  ++YNANP+SM+A++  +  + P      + + GD+ EMG  
Sbjct: 235 NRGQW----LTTDSNRIFLDAYNANPSSMEASLLAVHALHPELP--HVYIAGDIFEMGSH 288

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +S H  + +++   N+  V L G   LA   A      V + +       + +S+ V G
Sbjct: 289 EKSAHQSMVDLMQTLNLKTVHLVG---LAFGKAQAPRTMVKH-DNTKDALAYFKSNPVRG 344

Query: 445 DVVVVKSSNSCGFYRLINLL 464
            +V +K+S       L+  L
Sbjct: 345 AMVWIKASRGMALEGLLEAL 364


>gi|238761552|ref|ZP_04622527.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
 gi|238700066|gb|EEP92808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia kristensenii ATCC 33638]
          Length = 471

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 132/453 (29%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S      +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            + D+   L+ LA     +  A +  +  +     T     +A  +              
Sbjct: 62  YLRDLNQHLSNLAGQFYQQPGAALRLVGVTGTNGKTTTTQLLAQWAQMLGETSAVMGTVG 121

Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   +          +                  + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVEQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +    I    DD     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDDVGRRWLGQLPQAVAVSMEENV 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               N  +    + +     + +       + ++    +G     N+L+ L  +  L   
Sbjct: 242 PAGWNGPWLSATQVQYHDNGASIVFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + +     P  GR + +              + +A           L+    H +G
Sbjct: 302 LAELLASAPNLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H                     DVV++  K 
Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 443


>gi|188532897|ref|YP_001906694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
 gi|188027939|emb|CAO95796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia tasmaniensis Et1/99]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 135/478 (28%), Gaps = 49/478 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL       +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G  
Sbjct: 6   LRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAIKGHAADGRRFIPQAIAQGVA 61

Query: 67  LVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            V+   +  A  G +     +PV  +  +   L+ LA     +    +  I  +     T
Sbjct: 62  AVIAEAEGEAEDGQIVETHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
                +A  +               G+   LA         +                  
Sbjct: 122 TTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLAA 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G ++     +    A  T ++  HL     +     A   +     + G   +N
Sbjct: 182 MEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAIIN 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVV 284
            DD        K       T+ +  +       L+  K       + +         ++ 
Sbjct: 241 ADDKVGRRWLEKLPDAVAVTMENHLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +       S   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLVALATLLSLDYPLAALTATASQLQPVTGRMEVFSAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L+    H +GR   + G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALTAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQCADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +                      GD+V+V  K 
Sbjct: 410 VITDDNPRSEDPAAIVSDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|328906992|gb|EGG26758.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium sp. P08]
          Length = 529

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 151/481 (31%), Gaps = 49/481 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           WT  DL+ ++ G          + GI++DSR + P + +  ++G H  G  F   A + G
Sbjct: 27  WT--DLMASLDGCRADGNG-PAITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESG 83

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+ +           +PV  VDD   A+   A           T+  ITG+ GKTTT
Sbjct: 84  AVAVLTDEHGAKLAVEAGVPVVIVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTT 143

Query: 123 KEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDF---------GIFE------ 166
             ++   L +                G  L  AR  V              + E      
Sbjct: 144 AFLVEAGLRTAGHHVGTIGTIGFRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDV 203

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S               +   T +   HL     +++   AKA +F   +      +
Sbjct: 204 VMEVSSHALALQRVDGTCFDVVAFTNLGRDHLDFHKTLDDYFEAKARLFT-PDLARVGVI 262

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     L  +  A G+    +    + +D+Q+  W   +  +  +V        +  
Sbjct: 263 NVDDPRGRQLIERMQANGV-RAVTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLEL 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N  M L ++       D     L             R  L     T + + 
Sbjct: 322 SLPGEFNVRNAAMALAMLETAGLAFDDVADGLCSAQVPGR---MERVDLGADAPTALVD- 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +   P ++ +A+     ++    GR IAVLG     G    +        ++      V 
Sbjct: 378 FAHTPQAIASALDAARSLADS--GRLIAVLGA----GGDRDAVKRGPMGQVAAERADIVV 431

Query: 406 LSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           ++  +                  DA    I V                   GDV+ V  K
Sbjct: 432 ITDDNPRTEDPAVIRAAVLEGAHDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGK 491

Query: 451 S 451
            
Sbjct: 492 G 492


>gi|291326817|ref|ZP_06125981.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
 gi|291312721|gb|EFE53174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rettgeri DSM 1131]
          Length = 471

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 146/453 (32%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AIKG   DG  +I  A+ +G   V+   +  A  G +     +PV 
Sbjct: 2   TLDSRKAAAGDLFIAIKGHQSDGRHYIPQAIAQGVSAVIAEAEGEAVEGEIRFVHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            ++D+   L+ LA     +   K  ++ +TG+ GKTTT +++      + + +       
Sbjct: 62  YLNDLNNRLSALAGEFYHQPSAKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                 E             + +S  G ++     ++   AV T
Sbjct: 122 NGLLGHVSPSENTTGSAVDIQLELTQLLNQKATLTAMEVSSHGLVQGRVADLQFDAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +F        I    D    + L+    A  +      
Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFSTHNTKSQIINADDAIGLKWLQRLPQACAVTMENKI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +     + +  + +   + + +       + +     +G     N+L+ +  + ++   
Sbjct: 242 PQDWQGPWLKAMEVEYHDKGATIHFDSSWGNGDFESPLMGAFNVSNLLVAMATLLMMDYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  + A S   P  GR + +              + +A           L+    H +G
Sbjct: 302 LNKLLAATSSLSPVCGRMEVFSAPNKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L    +      + ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGAAAEEYADKIVITDDNPRSEDPIDIINDIMAGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S                       DV+V+  K 
Sbjct: 411 SSRALAIPGRPEAVTNTILQASPDDVIVIAGKG 443


>gi|299534643|ref|ZP_07047975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298730016|gb|EFI70559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 490

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 150/479 (31%), Gaps = 58/479 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+       G   +  + G+   ++++ P + F   KG    G  F+  A+ +GA 
Sbjct: 3   LAELLKDWPCSVTGGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTT 122
            +V    +   I    IP   V +    L     KLA         T+IAITG+ GKTT 
Sbjct: 63  AIVSEESISLPIIDKEIPFVWVPNTALFLSYASAKLAA--FPAEALTVIAITGTNGKTTV 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARMPVDVDFG 163
              ++  L+++ K  A IG+    I                     P+    +   V   
Sbjct: 121 SHFVSQLLNALHKHAAVIGTVGFFINGEKQQTAYEQLTTLQAKELHPILKQCVQKGVTHV 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S +G  +           V   ++  HL +  G+E    AK  + +  +K    
Sbjct: 181 VLE--ASSMGLQQHRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLN 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +       +   K          SFG   + D  ++   +   ++ + +Q       V
Sbjct: 239 GDDNFCRSVGIYDKK-------KSCSFGFDNHNDLHIQIVSESVGKTVLCLQTSASEHIV 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +  QN + +L  V  L   ++  +  +      EGR ++    L    +    
Sbjct: 292 EIPFVGKYHVQNAVASLMAVWRLGVPMEDIVGHMWSLRLPEGRLEKIENPLGIDVYVD-- 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y     +++A +                V       G             ++      
Sbjct: 350 --YAHTAEALQAVLQTFDH-----SKTIYLVFS----CGGNRDKAKRFAMGAVASKYADV 398

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++L+  +            +        +               +    GD+V+V  K 
Sbjct: 399 IYLTTDNPRDEDPIVINESIIAGFTEQQYYEIYLDRKLAIHQALAKAEKGDIVLVAGKG 457


>gi|254291796|ref|ZP_04962581.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
 gi|150422308|gb|EDN14270.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae AM-19226]
          Length = 512

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|325265588|ref|ZP_08132279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
 gi|324982936|gb|EGC18557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Kingella denitrificans ATCC 33394]
          Length = 848

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 143/451 (31%), Gaps = 38/451 (8%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGV 88
           +  DSR I   + F A +G + DG D+I  AV  GAG V  + D          +P   +
Sbjct: 60  LCADSRQIRAGDTFVACRGEYADGRDYIQAAVDNGAGFVYWDADGGFEWRPEWDVPNQAI 119

Query: 89  DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY--------- 137
            D+      LA  A         II +TG+ GKT+  + L  A+  +++           
Sbjct: 120 PDLRQMAGILAAEAYGSVSGSLHIIGVTGTNGKTSVTQWLAQAVDILEQKPQSCAIVGTV 179

Query: 138 ---ACIGSYNNHIGVPLTLA-----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          P  ++     R           + +S  G  ++  +      AV 
Sbjct: 180 GNGYWGSLQAATHTTPDPVSLQTLLRRFQQDGAACVAMEVSSHGLDQYRVNGTPFRTAVF 239

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +EE  + KA +F        +    D    +L      +     +YS
Sbjct: 240 TNLTRDHLDYHRSMEEYGAVKARLFHWQGLQNAVINTDDAFGQQLCAELKRSESSLHVYS 299

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G ++ AD ++ ++    +   ++V     S       +G   AQN    LG +     D
Sbjct: 300 YGFNEQADIRITRFAANPQGMAIDVATPWGSGTAQIRLLGRFNAQNFAAALGALCAGGYD 359

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A+ ALS   P  GR                  + +A   ++     +         G
Sbjct: 360 FQAALNALSHIRPATGRMDCIIGEGKPLVVVDYAHTPDALEKALATLREIKQ-----PAG 414

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIH 423
               V G     G         L   ++      V ++  +         + D LP   H
Sbjct: 415 CLWCVFG----CGGDRDRGKRPLMGEVAARLADKVVVTSDNPRTEDPQAIIADILPAVPH 470

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           +     D++++  K 
Sbjct: 471 PALVEADRKAAIEQAIAQAAPNDIILIAGKG 501


>gi|255533214|ref|YP_003093586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pedobacter heparinus DSM 2366]
 gi|255346198|gb|ACU05524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pedobacter heparinus DSM
           2366]
          Length = 485

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 86/474 (18%), Positives = 157/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D+L  +       V    V+ +  DSR +    AFFAIKG   DGH +I   V  GAG
Sbjct: 3   LQDILYGVTITDQIGVTNRKVSALVFDSRQVIKDAAFFAIKGTLADGHTYIAATVSAGAG 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
           +V+    ++ +  +  +    V +   AL ++A         K  +  ITG+ GKTT   
Sbjct: 63  VVICE--VLPAEIAPDVTYIQVANSAVALGRMAANFYGNPSEKLQLTGITGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNH---------IGVPLTLA-----RMPVDVDFGIFELGMS 170
           +L     ++      I +  NH            P  LA     +  VD       + +S
Sbjct: 121 LLFKLFRALGYKVGLISTVENHINDEVIPATHTTPDPLALNALLQDMVDAGCDYCFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++     +     V + I   HL      ++   AK   F+ L  +     N DD 
Sbjct: 181 SHAVVQHRIEGLSFAGGVFSNITHDHLDFHKTFDQYIKAKKAFFDALPASAFALTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + A       ++   + ADF+     +  E S+  + L     +V    +G 
Sbjct: 241 NGMVMLQNTRAAKK----TYALKQLADFK----AKVIENSFKGLHLDIDDADVFFKLVGS 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L  +    +  LS     EGR      + +          Y   P
Sbjct: 293 FNAYNLLAVYGTAVLLGQEKLDVLTLLSNLTGAEGRFDYITSSQHIIGIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            +++  +S +  I    E     +       G         +   ++      V L+   
Sbjct: 349 DAVQNVLSTIQDIRKGTEQVITII-----GCGGDRDKTKRPIMAQVACDWSDKVILTSDN 403

Query: 409 ---FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   + + + + +                           GD++++  K 
Sbjct: 404 PRTENPQTIVEEMEKGVSPTNKRKTLSIVDRKEAIKTACHLARPGDIILLAGKG 457


>gi|320172824|gb|EFW48056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella dysenteriae CDC 74-1112]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + ++           +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H IG     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|91070340|gb|ABE11257.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured
           Prochlorococcus marinus clone HF10-88F10]
          Length = 511

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 147/480 (30%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++ +     I S+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKERIASIDRERILVIEDNLDYIFGQIVAEFWNRPSRKIKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G             ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNSAVEAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225
           +S     +          A+ T     HL   S +E     K          EK G   L
Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNFTQDHLDYHSDMESYFQTKRKLFFPPYLKEKDGICVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N+DD +   L     K  +L    I       +  F +   K     S        + ++
Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQ 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++ +   N    +L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDNDVSRSLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    EG+ I V G     G         L   ++     
Sbjct: 366 TIIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEELSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++++  +            +   + +  ++                    D+V++  K 
Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKRENITIEIDRFKAINESIKFANKKDIVLIAGKG 480


>gi|187732212|ref|YP_001878895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
 gi|187429204|gb|ACD08478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella boydii CDC 3083-94]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + ++           +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H IG     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLIGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|170682313|ref|YP_001742207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
 gi|170520031|gb|ACB18209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli SMS-3-5]
          Length = 495

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHRCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINLNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|194443335|ref|YP_002039355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194401998|gb|ACF62220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|196040305|ref|ZP_03107606.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196028790|gb|EDX67396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 258

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 32/227 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I   + F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDI-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV----DVD 161
           GKTTT  +L   LS                      +  N  G P     + +    + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYSTDINTQGPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           + + E+    L   R      +  IAV T +   HL      +E   
Sbjct: 174 YCVMEVTSQGLHMERVKECNFK--IAVFTNLTQDHLDYHGTFDEYKH 218


>gi|126695770|ref|YP_001090656.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126542813|gb|ABO17055.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9301]
          Length = 511

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 145/477 (30%), Gaps = 40/477 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA   +
Sbjct: 9   LLNLVGIIPSLNLIDQEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAEAAI 68

Query: 70  VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
           + +     IGS       V  D++     ++      R   K  +I +TG+ GKTT   +
Sbjct: 69  IGSAAKEKIGSFDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTITFL 128

Query: 126 LTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSH 171
           L   L    K             G             ++   ++  +        L +S 
Sbjct: 129 LEYLLKKSGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILEVSS 188

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFLNYD 228
               +          A+ T +   HL   S +E     K         +EK G   LN+D
Sbjct: 189 HSIAQKRISGCEFEGAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLIEKDGISVLNHD 248

Query: 229 DSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           D +   L     K  +L    I       +  F +   K     S        + +++  
Sbjct: 249 DPWISKLSSDIEKRSSLVSTKITESEFENDDFFFVTDKKFTENGSTCIFHTPKEKIQLFV 308

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N +  + I+  L   +    K +  F    GR ++     +    +L    
Sbjct: 309 PLVGEFNLMNAIQAITILYKLNFSLKDLSKLIRSFPGAPGRMEKIEIDNDDVARSLPTVI 368

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +           VL  I    +G+ I V G     G         L   ++      ++
Sbjct: 369 VDYAHTP-DGLKKVLQSIKKLCKGKLITVFG----CGGDRDLGKRPLMGSIAEEFSDQLF 423

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   + +   +                    D+V++  K 
Sbjct: 424 ITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIVLIAGKG 480


>gi|91791717|ref|YP_561368.1| UDP-N-acetylmuramyl-tripeptide synthetases [Shewanella
           denitrificans OS217]
 gi|91713719|gb|ABE53645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella denitrificans OS217]
          Length = 502

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/490 (14%), Positives = 145/490 (29%), Gaps = 58/490 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    D+L                + +S+DSR +     F A+ G   DG  +I  A  +
Sbjct: 1   MMRLSDIL----APWFHYAGVESASSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQ 56

Query: 64  GAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGA---LNKLAVAARLRSKAT--IIAI 113
           GA   +V+TD   S G +      I  + V +       L+ +A      +     +I I
Sbjct: 57  GAVAALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGI 116

Query: 114 TGSVGKTTTKEMLTIAL---------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           TG+ GKT+  +++                          ++       +  M    DF +
Sbjct: 117 TGTNGKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDV 176

Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G ++     V   IAV T +   HL     +   ASAK  +F+    
Sbjct: 177 KGADICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQFPSL 236

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    DD+  +  +  +         S                  +           
Sbjct: 237 KYALLNLDDDTGAQWFEELAATKRKGFSVS---PNAKACYYTDKLHFDDAGVQGDFYYHD 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV-------FHPKEGRGKRYRC 332
             E         +   +L    + ++L A     +  +++              G+  R 
Sbjct: 294 FGENAVSQHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERF 353

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +L QG   ++D ++  +          L  +  H  G+   V G     G         L
Sbjct: 354 SLPQGASLVVDYAHTPDAIE-----QALKALRIHCHGQLWCVFG----CGGDRDKGKRPL 404

Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
               +      + ++  +            +   L +  +             + +    
Sbjct: 405 MAQAAERFADKLMVTSDNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKA 464

Query: 444 GDVVVV--KS 451
           GD+V++  K 
Sbjct: 465 GDIVLLAGKG 474


>gi|157159556|ref|YP_001456874.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|254037500|ref|ZP_04871577.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|256025399|ref|ZP_05439264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia sp. 4_1_40B]
 gi|301028568|ref|ZP_07191798.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|307136686|ref|ZP_07496042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli H736]
 gi|331640538|ref|ZP_08341686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331681470|ref|ZP_08382107.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|157065236|gb|ABV04491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli HS]
 gi|226840606|gb|EEH72608.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 1_1_43]
 gi|299878379|gb|EFI86590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 196-1]
 gi|309700296|emb|CBI99584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Escherichia coli ETEC H10407]
 gi|323935137|gb|EGB31504.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E1520]
 gi|323939875|gb|EGB36075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli E482]
 gi|324112502|gb|EGC06479.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia fergusonii
           B253]
 gi|331040284|gb|EGI12491.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H736]
 gi|331081691|gb|EGI52852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli H299]
 gi|332341417|gb|AEE54751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Escherichia coli UMNK88]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|2177098|gb|AAB60789.1| UDP-MurNAc-Dipeptide: meso-diaminopimelate ligase [Escherichia
           coli]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR K +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMKVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|322640591|gb|EFY37242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322647732|gb|EFY44217.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322648081|gb|EFY44548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656887|gb|EFY53173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322657403|gb|EFY53675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322663722|gb|EFY59922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322666555|gb|EFY62733.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322672286|gb|EFY68398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322679505|gb|EFY75550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322686166|gb|EFY82150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323195010|gb|EFZ80196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323200081|gb|EFZ85168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323201098|gb|EFZ86167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323209495|gb|EFZ94428.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323212253|gb|EFZ97077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E        +     D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 467


>gi|188585925|ref|YP_001917470.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350612|gb|ACB84882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 534

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/484 (15%), Positives = 141/484 (29%), Gaps = 51/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL++ +    +     G ++G+S DSR   P + F  IKG   DGH ++   + KG  
Sbjct: 34  LADLVKPLLKVKVFGKLDGEISGLSYDSRFTKPGQLFTCIKGTKDDGHKYLEDVLSKGVS 93

Query: 67  LVVV-----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------------- 107
            VV      +++    +  + IPV  V D   A   LA                      
Sbjct: 94  AVVAQYDCLSSEQKKLLTQIDIPVILVTDSRKAFAILASKYYNYPGDSLRVTGVTGTKGK 153

Query: 108 ---ATIIAITGSVGKTTTKEMLTIA-LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                +I    S GK     M+         +      +    + +   L R+       
Sbjct: 154 TTTVNLIDKLLSEGKEVKTGMIGTINARIDDQEEKQPTTTPGPLELNELLGRIENSGASH 213

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +     SH          V   IAV T +AP HL   + ++E    K  IF         
Sbjct: 214 VTLEVSSHAISQLR-IAGVDLDIAVYTNLAPEHLDYHTDMDEYKRTKGRIFSFQGLKPEK 272

Query: 224 F---LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                    +  +   +         + + G  +NA  + +        + +++     +
Sbjct: 273 NDKPKLAVINLDDKYASYMLEQPAVQVLTHGFDENAHVKGKIINTAETFTELKITSPWGN 332

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    IG     N+L  + +              L           R+        FT
Sbjct: 333 FTVKTPLIGKFNCYNLLAAITVALFEGIPASKIQTILEQ---PINIPGRFERIDLGQEFT 389

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ +  +   +       VL  +     G+   V G     GE  +S    +    S   
Sbjct: 390 VVVDFAHTTDS----LQEVLQSLRQMVSGKIGVVFG---CGGERDKSKRPKMGRAASDLG 442

Query: 401 ISHVWLS-----GFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++++           +   +        +  +              +   +GD V++
Sbjct: 443 -DKIFITSDNPRAEDPQKIVQDILSGCDVNNNEKIQIELDRAQAIEKSLNWAREGDAVLI 501

Query: 450 --KS 451
             K 
Sbjct: 502 AGKG 505


>gi|237729383|ref|ZP_04559864.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
 gi|226909112|gb|EEH95030.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Citrobacter sp. 30_2]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA         K  ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165
           TTT ++L      + +T        N  +G  +                         + 
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLAAQGATVG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +    K     + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVDVKYHDSGATIRFTSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTATQLQPVCGRMEVFSAPGKTTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467


>gi|154483605|ref|ZP_02026053.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
 gi|149735515|gb|EDM51401.1| hypothetical protein EUBVEN_01309 [Eubacterium ventriosum ATCC
           27560]
          Length = 491

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 162/474 (34%), Gaps = 43/474 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL  ++   +       V+ +  DSR ++  +AF  IKG  +DGH+FI   V KG
Sbjct: 1   MKLKDLLTKLEYKVVKGSDTIEVSHLQNDSRKVSDGDAFVCIKGAGFDGHEFIRDVVSKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        M        + V  VDD   AL  ++         K   + ITG+ GKTTT
Sbjct: 61  AVA---VVVMEDVEVDEDVTVVKVDDTRLALACMSADYFGNPAEKLITVGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
             M+   L S+      IG+    IG  +T A+      + + E              + 
Sbjct: 118 TYMVRSVLESVGIKTGLIGTIETIIGDEVTPAKNTTPESYVVQETFAKMVEQGCKCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +            + T I P H+              +             +  
Sbjct: 178 VSSQGLMLHRVSGFTFDYGIFTNIEPDHIGP-----NEHKDFDDYLHCKSMLLKQCKHGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +       +        I ++G + + DF+ +  K  ++   + V    K        I
Sbjct: 233 VNMDADFIDRVLEGHTCDIETYGVNGDYDFKAQDIKLFTKPGCLCVSYDLKGKMDFPVEI 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  ++I +   +   K  +     + +G+     +++ F  +ID ++NA
Sbjct: 293 HVPGMFSVYNSLCAIAICSHFTEDVEKIQTALENVKVKGRVEIIPISKRFTLMIDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
                 +  S+L+ +  +   R + V G     G  S+    ++ EV S  +   +    
Sbjct: 353 -----MSLESLLTSLKQYNPKRLVTVFG---CGGNRSKERRFEMGEVSSRLSDFTIVTSD 404

Query: 407 ---SGFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  + D L                     +   +  DGDV+++  K 
Sbjct: 405 NPRFEEPMDIINDILVGVKKADGEYVTVPDRKDAIRYAILNAKDGDVIILAGKG 458


>gi|308185654|ref|YP_003929785.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
 gi|308056164|gb|ADO08336.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Pantoea vagans C9-1]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 132/479 (27%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL    G  +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----GPWVPGAPARPLRDMTLDSRMAASGDLFVAVAGHQVDGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV   +  A+ G +     +PV  +  +   L+ LA     +       I  +     
Sbjct: 61  AAVVAEAEGEATDGEIREMHGVPVIYLAQLHQRLSALAGRFYQQPGEKQTLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------F 165
           T     +A  +               G+   L          +                 
Sbjct: 121 TTTTQLLAQWATLLGETSAVMGTVGNGLVGHLVAAENTTGSAVDVQHMLHELAEKGATLT 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +     +   +     + G   L
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMP-SYESAKWLLFSEHQVGQAIL 239

Query: 226 NYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           N DD       A+       T+             +    +     + +       + E+
Sbjct: 240 NADDEVGRRWLARLPDAVAVTMEDNLQSGCHGRWLKADAVEYHDNGAHIRFSSSWGNGEI 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L+ L  +  L   + T I       P  GR + +  A          
Sbjct: 300 DSPLMGAFNVSNLLLALATLLSLNYPLATLISVAPRLQPVNGRMEVFSAAGKPTVVVDYA 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L     H +G+   + G     G         L   ++      
Sbjct: 360 HTPDA-------LEKALEAARLHCKGKLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408

Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   L                          D+V+V  K 
Sbjct: 409 VVITDDNPRSEDPQAIVKDILTGLLDPGRARVVSGRAQAVTNAIMQAQPDDIVLVAGKG 467


>gi|237785338|ref|YP_002906043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium kroppenstedtii DSM 44385]
 gi|237758250|gb|ACR17500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 526

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 141/505 (27%), Gaps = 70/505 (13%)

Query: 4   LWTFHDLLQAIQGHSIG-IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L +   G  I    P   V  I ++++++     F  + G H  G  F   +  
Sbjct: 1   MATLQELAEISGGRLIRTDDPDLVVTDIGLNAQALPEGGLFAGVPGLHVHGAQFADSSS- 59

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
             A  V+ + D V  +    +P+  VDDV   L +++ A         T+I ITG+ GKT
Sbjct: 60  --AAAVLTDHDGVEKVTREDLPIIVVDDVRAVLGEVSSAVYDHPSRDLTVIGITGTAGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE-- 166
           TT  M+  AL     +   IG+    I              P   A   +    G+    
Sbjct: 118 TTSYMVEAALLHHGISTGLIGTTGTRINGEKVPSTLTTPEAPNLQALFAMMKKRGVTHVV 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS-----AKAEIFEGLEKTG 221
           + +S               +A  T ++  HL     +E+         K +     E + 
Sbjct: 178 MEVSSHAIALGRVLGTHFSVAGFTNLSQDHLDFHPTMEDYFQTKARLFKEDSPLHAETSV 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +        +      +  +       S   D                      + 
Sbjct: 238 VCIDDAWGQRLATMLPHPFTVSTEAASEHDASLQPDVWAGPSSVMDNGVQTAELYGFGAN 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+  H             L +  ++   +     A+         G+  R    Q F  +
Sbjct: 298 EMTLHIPMPGRFNVANAMLAMGLLVKTGMKA-EDAIEGLSTVTVPGRLERIDCGQDFMAV 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++     +      VL  +  H  GR   V+G     G         +    +    
Sbjct: 357 VDYAHKPGAIAA-----VLDTLRAHVRGRIAIVVGA----GGDRDHSKRPIMGREAALRS 407

Query: 402 SHVWLSGFHVL------------ALKDALPRSIHVHYSE--------------------- 428
             V ++  +              A    +   + V  ++                     
Sbjct: 408 DLVIVTDDNPRSEDPASIRQQVVAGAKEVADHVDVDRADEPRNKVKTEGSEHRPTIREIG 467

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                          GD V+V  K 
Sbjct: 468 DRREAIRAAIQWTQPGDAVIVAGKG 492


>gi|223042721|ref|ZP_03612769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
 gi|222443575|gb|EEE49672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           capitis SK14]
          Length = 496

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 151/476 (31%), Gaps = 42/476 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+  ++       V+ I+ DSR+      F A KG   D H F  + +++G
Sbjct: 1   MNASALFEKIRVKNVIGTLDKNVDDITTDSRTAKEGSIFVASKGYTVDSHKFCQNVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             +VVVN ++        +    V D L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CSIVVVNRELE---LDGEVTQVVVPDTLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFE--------------- 166
             M+ +    + K  A    +           A    +      +               
Sbjct: 118 ATMIHLIYRKLNKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDADAEAEAMT 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G        V   +A+ + +   HL     +E    AK+ +F  L +       
Sbjct: 178 MEVSSHGLSLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLAKEKY 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +       ++    ++++G    A F  +   +  +    +         V   
Sbjct: 238 VVLNNDDDFSHYLASVTPYEVFTYGIDNEAQFMAKNIDESLQGVEFDFSTPFGDYRVKSP 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N++  +  V    A ++  I A++   P           L     +L  +  
Sbjct: 298 YVGRFNISNIMAAIIAVWSKGASMEEIINAVTSLEPV-------EGRLEVLDPSLPIDLI 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                +      ++  + P  + + I ++G M   GE   +   ++  V       +V  
Sbjct: 351 IDYAHTADGMNKLIDAVKPFVKQKLIFLVG-MA--GERDMTKTPEMGSVACRA--DYVIF 405

Query: 407 SGFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +  +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 TPDNPANDDPKMLTAELAKGATHDNYVEFDDRAEGIKHAIDVAEPGDTVVL-ASKG 460


>gi|167550682|ref|ZP_02344439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168262192|ref|ZP_02684165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|205324307|gb|EDZ12146.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205348805|gb|EDZ35436.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|284054231|ref|ZP_06384441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrospira platensis str. Paraca]
          Length = 498

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/461 (18%), Positives = 157/461 (34%), Gaps = 45/461 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135
           S +IP V    D+  A  ++A A          ++ +TG+ GKTTT  ++   L+++ K 
Sbjct: 81  SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140

Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180
                       G     +        +             FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 201 PFQ--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARL- 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +         + D                +     S       +G +   N+L  L
Sbjct: 258 -GGDRVWSYSVSDPSTDIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D+   + +L  F    GR +R + +  Q    ++D ++  +        ++L
Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVKISPEQNITVIVDYAHTPDSLE-----NLL 371

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
               P   GR I V G     G+  ++    + ++ +  +   V  S          +  
Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428

Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +P  +                +    GD V++  K 
Sbjct: 429 DVLAGIPDHVKPIVIGDRAKAIRTAINEAQPGDGVLIAGKG 469


>gi|262190389|ref|ZP_06048649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
 gi|262033729|gb|EEY52209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae CT 5369-93]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 25  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 85  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 432 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|254821976|ref|ZP_05226977.1| hypothetical protein MintA_18732 [Mycobacterium intracellulare ATCC
           13950]
          Length = 419

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 155/368 (42%), Gaps = 23/368 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              I+ ITGS GKT+TK+++   L  + +  A  GS+NN +G P T+ R   + DF + E
Sbjct: 32  GLRIVGITGSSGKTSTKDLVAAVLKPLGEVVAPPGSFNNELGHPWTVLRATPETDFLVLE 91

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  K+E+ + + ++G + LN
Sbjct: 92  MSARHPGNIAALAEIAPPAIGVVLNVGTAHLGEFGSREAIAQTKSELPQSVPESGVVILN 151

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------S 280
            DD     +   + A  ++   +   S              E +     L  +       
Sbjct: 152 ADDPAVAAMAGVTAARVVRVSRAENTSAGPSQLWAGPVSLDEVARPCFTLHHRDASGTTQ 211

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V     G H   N L    +     ADVD    AL+   P            +    T
Sbjct: 212 AQVRLGVYGDHQVTNALCAAAVALECGADVDQVAAALAGAGPVSRHRMHVTTRADGV--T 269

Query: 341 LIDESYNANPASMKAAISVLSQI------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +ID++YNANP SM+A +  L+ I       P  + R  AVLG+M E+GE + + H  +  
Sbjct: 270 VIDDAYNANPDSMRAGLQALAWIAHGGGDRPAEKRRSWAVLGEMAELGEDAIAEHDRIGR 329

Query: 395 VLSLYNISHVWLS--GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +    ++S + +   G  + A+                       +     +++ L  GD
Sbjct: 330 LAVRLDVSRLVVVGSGRSMSAMHHGAVMEGSWGSADKGAVNVADGEAALALLRAELQPGD 389

Query: 446 VVVVKSSN 453
           VV+VK+SN
Sbjct: 390 VVLVKASN 397


>gi|260853298|ref|YP_003227189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751947|dbj|BAI23449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli O26:H11 str. 11368]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  TAIIAEAKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|157364634|ref|YP_001471401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
 gi|157315238|gb|ABV34337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga lettingae
           TMO]
          Length = 492

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 151/475 (31%), Gaps = 49/475 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              + +  +  +         + GI+  S  + P   F   KG  +D H+     ++KGA
Sbjct: 5   NLIEAIDEVTLNLQFDGEDIVITGITNKSTEVRPGYLFICHKGSRFDSHEIASEIIKKGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             +VV   +     S+  P   V D   A + L+         K   I ITG+ GKTT  
Sbjct: 65  SFLVVEHPI-----SVDFPHVVVSDSRLAESILSALYYDDPFNKLLTIGITGTNGKTTAA 119

Query: 124 EMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
            +    L ++                    +H         +   +   +        + 
Sbjct: 120 HLFHHVLKTLGSNGSMLGTIYYDILGEQKFHHDNTTPDAIEILKAMKNTVDRSGKHFVME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S           V+  IA +T I   HL      +E    K  IF+ L++ G   ++ +
Sbjct: 180 VSSHSLAMKRVESVKFDIAALTNITRDHLDFHQTFDEYIKTKLHIFDLLKEFGIAVVSDE 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                                +G S+N+D+++   +     +   ++ +    +   +  
Sbjct: 240 FEHI--------VNKRVKKVIYGMSENSDYRILSAEIDKFGTNFVLKSRFGEHKCSINIP 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N  + +  +  L  D+++ I+A+  F   EGR +  R     G   ++D +++ 
Sbjct: 292 GIHNAYNATLVIASLCELGYDIESIIEAIKSFEGVEGRFQFIREGTLVGIDIVVDFAHSP 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +          L        GR I V G     G  +      +   +         ++ 
Sbjct: 352 DALE-----KTLITARKIASGRIITVFGA----GGQADKGKRPMMAEVVCRYSDVSIITT 402

Query: 408 ----GFHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               G     +    +  +P                   +    GD+V+V     
Sbjct: 403 DDPRGEDPEEILFEVEKGVPSGSPYLVIPDRKEAIETALTLANRGDMVIVAG-RG 456


>gi|218698508|ref|YP_002406137.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IAI39]
 gi|218368494|emb|CAR16229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli IAI39]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|194434409|ref|ZP_03066671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|194417325|gb|EDX33432.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella dysenteriae 1012]
 gi|320179647|gb|EFW54596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Shigella boydii ATCC 9905]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|323497890|ref|ZP_08102899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
 gi|323316935|gb|EGA69937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio sinaloensis DSM 21326]
          Length = 493

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/481 (14%), Positives = 155/481 (32%), Gaps = 45/481 (9%)

Query: 1   MNPLWTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+   T   LL   +   +     +  V+ + +DSR + P   F A++G   DG  FI  
Sbjct: 1   MSNTITLATLLAPWVD-LAANPFGRLPVSQLELDSRKVTPGATFVAVQGHAVDGRKFIAS 59

Query: 60  AVQKGAGLVVV----NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           A+ KGA  VV          +      IPV  ++ +   L+ LA          +I +TG
Sbjct: 60  AIDKGAAAVVAQESSEHPHGSIEVQAGIPVVYIESLDSQLSALAERLYPLQSMKLIGVTG 119

Query: 116 SVGKTTTKEMLTIA------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--- 166
           + GKTT  +++          +++  T            V  T + + +       E   
Sbjct: 120 TNGKTTITQIIAQWLGLVEKRAAVLGTAGNGFLDALQPAVNTTGSAIEIQQTLAALEQQS 179

Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                + +S  G ++     +   ++V T ++  HL     +EE   AK  +      T 
Sbjct: 180 ADYTAMEISSHGLVQGRVKTLPFAVSVFTNLSRDHLDYHGTMEEYEQAKLTL-----FTE 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +   +  + + A+  +    ++    K+ +AD  +   +    +S + +   G   
Sbjct: 235 HKTAHAVINVDDPVGARWASTLANSVQVSLKTLDADNAIYASQVDYSESGISLSFSGMYG 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +               + + + ++LT  +D      +        G+            +
Sbjct: 295 DGKLDVPLIGEFNANNVLVALATLLTLGIDKQRLVETASQLTPVIGRMELFQTPSKAKVV 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +          L  +  H +G+   + G     G         +   +     
Sbjct: 355 VDYAHTPDALE-----KALLALRVHCKGKLWVIFG----CGGDRDVGKRPMMAEIGERLA 405

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +            +   + +               F  S     D++++  K
Sbjct: 406 DKVIIADDNPRSEDPARIVEDMLAGMSQPDLASVEHDRFNALQFALSQSQAQDIILLAGK 465

Query: 451 S 451
            
Sbjct: 466 G 466


>gi|323964819|gb|EGB60286.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli M863]
          Length = 495

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 467


>gi|284008375|emb|CBA74779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arsenophonus nasoniae]
          Length = 475

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 144/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR +A  + F A+KG   DG  +I  A+ +G   ++         G++     +PV 
Sbjct: 6   TLDSRKVAAGDLFLAVKGHQKDGRQYISQAIAQGVAAIIAEAKGETEAGTIRYMHGVPVI 65

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSY 143
            ++D+   L+ LA         K  +I +TG+ GKTTT +++      + +         
Sbjct: 66  YINDLNNQLSLLAGEFYQHPAAKLRLIGVTGTNGKTTTTQLIAQWAKGLGEVSAVMGTVG 125

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     +    AV T
Sbjct: 126 NGILGQIVLSENTTSSAVDVQAELQLLLDKQATLVAMEVSSHGLVQSRVAAIPFTAAVFT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     ++  A+AK  +F   +    I    D++  + L+    A  +      
Sbjct: 186 NLSRDHLDYHGDMQNYAAAKWLLFSTHKSDKQIINVDDETGLQWLEKLPQACAVSMENRI 245

Query: 251 GKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  + L +     +  + +          +    +G     N+++ +  + ++   
Sbjct: 246 PTDWQGAWMLVEQVDYHDRGATIHFNSTWGKGSLKSPLMGAFNVNNVMLAMATLLMMGYP 305

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  IK+     P  GR + +              + +A           LS +  H  G
Sbjct: 306 FEAVIKSSHAIQPVCGRMEVFTSPGRPTVVVDYAHTPDA-------LEKALSALRLHCRG 358

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           R   V G     G         L   ++      V ++  +            +      
Sbjct: 359 RLWCVFG----CGGDRDKGKRALMGSVAEQYADIVVVTDDNPRSEEPKAIINDILSGFLD 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                       DV+++  K 
Sbjct: 415 AGRAMPIVGRVEAVTSAIMQANADDVILIAGKG 447


>gi|238760092|ref|ZP_04621242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
 gi|238701711|gb|EEP94278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelateligase
           [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+ + + VA   S      +PV 
Sbjct: 2   TLDSRVAAAGDVFVAVVGHQTDGRRYIPQAIAQGVAAVIADAEGVAPDASMVEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++   +       
Sbjct: 62  YLRNLNQHLSTLAGQFYHQPGDALRLVGVTGTNGKTTTTQLLAQWSQALGDTSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +    I    D+     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMEGNV 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +      +     + +       + ++    +G     N+L+ L  +  L   
Sbjct: 242 PTGWKGPWLFASDVQYHDNGASIAFDSSWGAGQLESRLMGAFNVSNLLVALSTLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + A     P  GR + +              + +A           L+    H +G
Sbjct: 302 LAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIIADILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H                   + DVV++  K 
Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 443


>gi|16128078|ref|NP_414627.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89106968|ref|AP_000748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K-12 substr. W3110]
 gi|170079724|ref|YP_001729044.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899486|ref|YP_002925282.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|127538|sp|P22188|MURE_ECOLI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|581032|emb|CAA38862.1| UDP-MurNac-tripeptide synthetase (MurE) [Escherichia coli]
 gi|1786273|gb|AAC73196.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|21321966|dbj|BAB96653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Escherichia coli str. K12 substr. W3110]
 gi|169887559|gb|ACB01266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863753|gb|ACR65751.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450708|gb|ACX41130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli DH1]
 gi|315134779|dbj|BAJ41938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli DH1]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|320197464|gb|EFW72078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Escherichia coli WV_060327]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFTASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|240126241|ref|ZP_04739127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Neisseria gonorrhoeae SK-92-679]
 gi|268684822|ref|ZP_06151684.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
 gi|268625106|gb|EEZ57506.1| UDP-N-acetylmuramyl-tripeptide synthetase [Neisseria gonorrhoeae
           SK-92-679]
          Length = 492

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/445 (17%), Positives = 143/445 (32%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSIPVFGVDDV 91
           DSR I   + F A +  + DG  +I  AV  GA  V  + D   A      +P  G+ D+
Sbjct: 29  DSRQIKQGDIFVACQVEYTDGRSYIPAAVANGAAFVFWDDDGRFAWNPEWKVPNQGIKDL 88

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS----SIKKTYACIGSYNN 145
                 LA            +  +TG+ GKT+  + L  A                 +  
Sbjct: 89  KHRAGILAAQVYGNVSDGLKVWGVTGTNGKTSITQWLAQAADLLGEKTAIIGTVGNGFWG 148

Query: 146 HIGVPLTLARMPVDVDFGIFE----------LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +         PVDV   ++           + +S  G  +   + V    A+ T +   
Sbjct: 149 ALEETAHTTPAPVDVQTLLYRFRQQGATAAAMEVSSHGLDQSRVNGVPFRSAIFTNLTRD 208

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E   + K+ +F        +    D    EL            +YS+G S++
Sbjct: 209 HLDYHGTMEAYGAIKSRLFYWHGLKHAVINTDDGYGAELAGRLKKDCPDLAVYSYGFSEH 268

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++  +   S+      +      +     +G   AQN+   + ++      +D  + 
Sbjct: 269 ADIRITDFTASSDGIEAVFRTPWGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDKVLD 328

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      +            Y   P +++ A+S L +I P G      V 
Sbjct: 329 VLAKIRPASGRMDCIMNSGKPLVVVD----YAHTPDALEKALSTLQEIKPQGAALWC-VF 383

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRSIHVHYSE- 428
           G     G         L    ++     V ++  +         + D LP        E 
Sbjct: 384 G----CGGNRDCGKRPLMGAAAVQGADKVVVTSDNPRLENPQDIINDILPAVPAPECVEA 439

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D++++  K 
Sbjct: 440 DRAAAIRYAVEQAAANDIILIAGKG 464


>gi|329770421|ref|ZP_08261803.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
 gi|328836544|gb|EGF86204.1| hypothetical protein HMPREF0433_01567 [Gemella sanguinis M325]
          Length = 498

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 166/474 (35%), Gaps = 32/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +++  I+  +I       VN IS DSR I   + F AIKG   DGH++I   +++G
Sbjct: 1   MNILEVINNIKIKTIYGKLPKSVNNISQDSRKIGEGDVFVAIKGYTVDGHNYIGKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     +I + ++ V    ++    + +A A         +A+TG+ GKT+   
Sbjct: 61  AALVIASRYEDYNIENCAVIVVKEHEIEKIASMIAKAINHGPAVHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169
           ++   L ++ ++ A I    +  +   P+       DV      I EL            
Sbjct: 121 LVHNMLRNLDESSAFIGTNGFGKNDNEPVYFGNTTPDVVTLHNKIGELRRENIKNLAFEA 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S         + V   +A+ T +   HL     ++  A  K+ +F  L    +       
Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNFSEAKYGVL 240

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +  +               ++  K + ADF     KQ  E    + Q    S E      
Sbjct: 241 NKDDDYYGIMSKCLYHQEINYSVKDETADFYAYNIKQFKENGIYKTQFTLNSPEGTFECT 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++   M+  +    I       +++ L    P  G        L  G    I   +  
Sbjct: 301 TNYIGDFMVSNVLAAMIAVWVKGYSVEKLVSILPSLGALYGRMEILGDGLPIDIISDFAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P   K  +    +I    +G+R  +L  M   G    S    + E++S     +V ++ 
Sbjct: 361 TPDGYKKLLEATREIR---KGKRTLLLTGMG--GGRDISKGPLIGEIISEA--DYVIITT 413

Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V  L  A+ + +     E           +      GDVV++ +S  
Sbjct: 414 DSPRDEDVEVLMGAIEKGMTHKNYEKVWFRTDAVKRVIELAEPGDVVIL-ASKG 466


>gi|330446838|ref|ZP_08310489.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491029|dbj|GAA04986.1| UDP- [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 505

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/484 (15%), Positives = 144/484 (29%), Gaps = 49/484 (10%)

Query: 4   LWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +     LL            +    VN I++DSR +A    F A+KG   DG  FI  A+
Sbjct: 7   MMKLEMLLSPWLTNKALPQALSDCQVNAITLDSRQVAAGSLFAAVKGHTVDGRRFIDTAI 66

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           Q GA  ++   D +A  G +       +  + D+   L+ +A            + A+TG
Sbjct: 67  QAGAVAIIAEADGIAQDGDIVLQDGTCIVYLQDLNQKLSAIAGRFYGEPDQQLALYAVTG 126

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165
           + GKTT  ++L     +    Y          G+   L          I           
Sbjct: 127 TNGKTTISQLLAQW--ANLIGYKAGVMGTTGNGLLTDLKPAANTTGSAIEIQQTLAGLVE 184

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G ++     +    ++ T ++  HL     ++  A AK  +F   + 
Sbjct: 185 QGADFAAMEVSSHGLVQGRVRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEHDA 244

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              I    D    E L    HA+ +     +            + +  ++   +      
Sbjct: 245 GVPIINADDAVGAEWLHDLPHAVAVAIEPEAVANHTGLKLWATEVQFSTQGVTIAFDSSW 304

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +     +G     N+L+ L  +      +   +   S      GR + ++       
Sbjct: 305 GQGKFTAPLVGSFNVTNLLLALATLLATNHSMAELLAKASQLQAVIGRMEVFQDTDKAMM 364

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 + +A           L  +  H +G+   + G     G    S    +   ++ 
Sbjct: 365 VVDYAHTPDA-------LEKALQALRVHCDGKLWCIFG----CGGDRDSGKRPMMAEVAE 413

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + L+  +            +   L                    +     D+++V
Sbjct: 414 RLADQIILTDDNPRSEDPKVIVADMLAGLTSPQSATVIHDRATACRHAFTHASHQDIILV 473

Query: 450 --KS 451
             K 
Sbjct: 474 AGKG 477


>gi|227550538|ref|ZP_03980587.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257888564|ref|ZP_05668217.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897060|ref|ZP_05676713.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227180439|gb|EEI61411.1| conserved hypothetical protein [Enterococcus faecium TX1330]
 gi|257824618|gb|EEV51550.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833625|gb|EEV60046.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 511

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 182/392 (46%), Gaps = 9/392 (2%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V    ++    S++ P F V+D    L +L+   R      ++AITGS GKT+T+ M+
Sbjct: 96  VIVTEKPIMD--PSVTTPQFIVEDSWKFLLELSAKLRSCFVNPVVAITGSAGKTSTRMMI 153

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--RP 184
           T  L   K       ++N    VPL ++++  + D    E+ ++ L      +     + 
Sbjct: 154 THLLQEEKVLENRG-NHNVRFAVPLYMSKLLSNPDVLNLEVSVNALNSYDTGSMSNLIQQ 212

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--SFFELLKAKSHAL 242
            IA++T+I  AHLS+    + +A  KA+IFEGL++ G   +N D     F +L + +   
Sbjct: 213 DIAIVTSIGEAHLSSLKNTKGVAVHKAKIFEGLKQDGIAIINGDIGKEEFSILVSAAEKR 272

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K +       + D  +++  Q  E   + V   G+ + +        M  N L  L +
Sbjct: 273 TSKIVVYSLHDASRDVFVKQISQKREYCEVLVSFFGEDILLKLAVSSEGMIANSLAALIV 332

Query: 303 VSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              L  ++   IK    F P  +   +    +     FT ID+++NA+  SMK AI+   
Sbjct: 333 AKELKKEISPYIKKFETFKPLPKILERTIYTSETGTDFTFIDDTHNASLPSMKNAINYFD 392

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            I P  +G ++ +LG + ++G+ ++  H  + E L+    +H++  G H   L +   + 
Sbjct: 393 GIQPFYKGNKVLILGQIADLGDSTKQIHRFVQEELNQSAATHIYGYGEHFKLLFEEGQKT 452

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              + + +++  L   +++ L++  +V+ K S
Sbjct: 453 DDRLQWFDSLQELCNDLETKLIEDSLVLAKGS 484


>gi|296133664|ref|YP_003640911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola sp. JR]
 gi|296032242|gb|ADG83010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermincola potens JR]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/482 (18%), Positives = 154/482 (31%), Gaps = 50/482 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ I G  +       + G++ DSR + P  AF  I+G   DGH F  +AV+ 
Sbjct: 1   MRRLTDLLKNIYGAQVQGDLTVQIEGLAYDSRKVQPGFAFICIEGYKTDGHLFAQNAVEN 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +++    +        + V   +D   AL  +  A       K  II +TG+ GKTT
Sbjct: 61  GATVIIAEKPVTVPSSVTVVTV---EDTREALAYMGAAFYDYPGDKLNIIGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKT---YACIGSYNNHIGVPLTLA-------------RMPVDVDFGIF 165
           T  ++   L    K       I +      +P+T                +   VD+ + 
Sbjct: 118 TTHLIENILVKAGKKVGLIGTIKNKIIDRVLPVTNTTPESLDLQALLAEMVDAGVDYAVM 177

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223
           E+  SH  E+  +        A+ T I   HL     ++    A  K  I  G     + 
Sbjct: 178 EV-SSHALELNRVAGC-EYDQAIFTNITQDHLDFHETMDNYLAAKQKLFINLGKNSRKSR 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +        +    + ++G    AD +  K    S+           S+++
Sbjct: 236 NKYGIINIDDSKGQSFLEVTHGQVITYGIQSAADVRAEKIDLRSDGVSFTAVTPRGSVDL 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  +         +    +AL       GR ++              
Sbjct: 296 KLNLTGLFNVYNSLAAVASGLGENIALPVIKEALEEVKGVPGRMEKVEAGQPFAVLVDYA 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +          +VLS      +GR I V G     G         +   +S      
Sbjct: 356 HTPDG-------LENVLSAAREFTKGRLITVFG----CGGDRDRTKRPIMGEVSAKLSDF 404

Query: 404 VWLSGFHV---------LALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             L+  +            +++ +   I        E          +    GDVVV+  
Sbjct: 405 TVLTSDNPRSESPAEILRDIEEGVKPIIGPEKYTVIEDRKEAIRHALNMARAGDVVVIAG 464

Query: 450 KS 451
           K 
Sbjct: 465 KG 466


>gi|168230402|ref|ZP_02655460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194469969|ref|ZP_03075953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194456333|gb|EDX45172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|205335121|gb|EDZ21885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLANLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +    +          +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINSNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGGIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|333011473|gb|EGK30887.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-272]
 gi|333021716|gb|EGK40965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +  A           
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAAGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|110804149|ref|YP_687669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 5 str. 8401]
 gi|110613697|gb|ABF02364.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 5 str. 8401]
          Length = 495

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|300871669|ref|YP_003786542.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
 gi|300689370|gb|ADK32041.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira pilosicoli
           95/1000]
          Length = 507

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 155/472 (32%), Gaps = 49/472 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                  +  +  I+ +S+ +     F AIKG   DGH +I  A++  A +++ +     
Sbjct: 18  EITKESLKLEIKSIAYNSKLVKKNYIFVAIKGLKDDGHKYIESAIKNKASIIIYDISADK 77

Query: 77  SIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128
           S  +       ++   G  +    L  ++          +  IAITG+ GKTTT  +L  
Sbjct: 78  SFINSLKEKYKNVCFVGSKNPRETLAYMSAKLYDEPTKKMHSIAITGTNGKTTTSYLLKA 137

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARM------------PVDVDFGIFE--LGMSHLGE 174
           AL S K   A IG+  N IG       +                   +    +  S    
Sbjct: 138 ALESAKNKIALIGTIKNMIGKSEIKTNLTTPESVDLENIFDKAYKKNVSHIVMEASSQAL 197

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  +    A+ T +   HL     ++    AK ++F  L+++         +    
Sbjct: 198 AMDRCDYINYDAAIFTNLTEDHLDYHIDMKNYLKAKLKLFSLLKQSSKKKKLAIINISTD 257

Query: 235 L---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGY 290
                          + ++G ++ AD+  +     S+ S  E   +     +V    +G 
Sbjct: 258 YFKEIKNYIKKLDLKMVTYGLNEKADYYAKIITLNSKYSEYEFYAKGKFISKVKLSLLGE 317

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L  L        D++  IKA+           R+     +    ++   Y+  P
Sbjct: 318 FNVVNSLSVLAYAYEYKLDIEKVIKAIRKVQ----VSGRFEIVSGEKCPFIVAVDYSHTP 373

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
            S++  +    ++ P+     I V G     G         +   ++        L    
Sbjct: 374 DSLENILVESRKLKPNR---VIVVFG----CGGDRDRKKRPIMASIAEKYADISILTTDN 426

Query: 407 -----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +  +++    S +    +  + +F  I+    + D+V++  K 
Sbjct: 427 QRTESIEQIMSDIENGFTHSNYKKIIDRKEAIFEAIKE-AKENDIVIIAGKG 477


>gi|15642403|ref|NP_232036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587613|ref|ZP_01677377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121728366|ref|ZP_01681395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|147674384|ref|YP_001217908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|153818401|ref|ZP_01971068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|153822232|ref|ZP_01974899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|227082529|ref|YP_002811080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|298500234|ref|ZP_07010039.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
 gi|9656979|gb|AAF95549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548123|gb|EAX58196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 2740-80]
 gi|121629357|gb|EAX61788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V52]
 gi|126511034|gb|EAZ73628.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae NCTC 8457]
 gi|126520242|gb|EAZ77465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|146316267|gb|ABQ20806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|227010417|gb|ACP06629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae M66-2]
 gi|227014300|gb|ACP10510.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrio cholerae O395]
 gi|297540927|gb|EFH76981.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MAK 757]
          Length = 512

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|15643009|ref|NP_228051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
 gi|8134581|sp|Q9WY79|MURE_THEMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine
           ligase; AltName: Full=D-lysine-adding enzyme; AltName:
           Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:LD-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|4980735|gb|AAD35328.1|AE001707_15 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga maritima MSB8]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 90/485 (18%), Positives = 158/485 (32%), Gaps = 57/485 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------RSK 107
             VVV  ++      L  P   V D      K+A                        + 
Sbjct: 64  VAVVVEREI-----DLDFPYIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I  +  S+G+  +     +        Y  I + +    +            F   E+
Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGNSYYDDITTPDAITILSAMKENREGGGKFFALEV 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH    + +   VR  + + T I+  HL      E    AK  +F+ L+  G   LN 
Sbjct: 179 -SSHALVQQRV-EGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN- 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E L    +        +FG SKNAD++L   +   E +   ++     ++V    
Sbjct: 236 -----ESLADAFNRKS--RKITFGTSKNADYRLGNIEVSWEGTQFVLETPDGLLKVFTRA 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N    +  +  L  D      +L  F   EGR +  R A   G   ++D +++
Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +L  +    +GR I V G     G  S      +   ++      V L+
Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399

Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                G      +  L   + +                  +    GD VV+        Y
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458

Query: 459 RLINL 463
           ++I+ 
Sbjct: 459 QIIDE 463


>gi|254849528|ref|ZP_05238878.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
 gi|254845233|gb|EET23647.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae MO10]
          Length = 509

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 39  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 98

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 99  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 158

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 159 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 218

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 219 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 278

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 279 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 336

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 337 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 389

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 390 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 445

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 446 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 481


>gi|327484902|gb|AEA79309.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Vibrio cholerae LMA3894-4]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G     
Sbjct: 25  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 84

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 85  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 432 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|229528607|ref|ZP_04417997.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
 gi|229332381|gb|EEN97867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 12129(1)]
          Length = 499

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA +V+   D     G     
Sbjct: 29  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANVVLAEADAQHLNGWVEYR 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 89  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 269 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 436 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|323950919|gb|EGB46796.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H252]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELVGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|297581033|ref|ZP_06942958.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
 gi|297534859|gb|EFH73695.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Vibrio cholerae RC385]
          Length = 512

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGCHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|20808896|ref|NP_624067.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517554|gb|AAM25671.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 508

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 89/357 (24%), Positives = 139/357 (38%), Gaps = 14/357 (3%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158
              R R     I ITGS GKT+TK  +T  LS          SYN  +GV   +   +  
Sbjct: 149 RKIRNRKDLITIGITGSYGKTSTKHFITAVLSEKFSVLMTPESYNTPMGVTKVIRNELKD 208

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                + E+G    G+I+ L  L  P I VIT+I P HL  F  IE +A  K E+ EGL 
Sbjct: 209 THQIFVCEMGARQRGDIKVLVKLANPKIGVITSIGPQHLETFGTIENVAKTKFELVEGLP 268

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           + G   LN D+ +      K     +     S  + K   +            +  V   
Sbjct: 269 EDGIAVLNGDNYYCRTFGEKFAVRKLFYGTESPIERKYFLWAENIINTRQGLKFDAVTED 328

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G  ++     +G H   N+L  + +   L  + +   + LS   P   R    +      
Sbjct: 329 GMRIKCEVPLLGRHNVSNLLAAISVALALGLNEEEIKRGLSRIEPVPHRL---QLISTPH 385

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID+++N+NP         L+ +      RRI V   M E+GE     + +L + ++
Sbjct: 386 GVTVIDDAFNSNPEGA---KEALACLKEMDAKRRIIVTPGMVELGEKEYEENKNLGKNIA 442

Query: 398 LYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +  L G      + + L  +      V     +D     +Q+ L  GDVV+ 
Sbjct: 443 EV-CDYAILVGKKRSRPIFEGLKEASFPEEKVFVVANLDEATKVLQTLLQPGDVVLF 498


>gi|24111530|ref|NP_706040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 301]
 gi|30061652|ref|NP_835823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella flexneri 2a str. 2457T]
 gi|46577006|sp|Q83MG0|MURE_SHIFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24050288|gb|AAN41747.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str. 301]
 gi|30039894|gb|AAP15628.1| meso-diaminopimelate-adding enzyme [Shigella flexneri 2a str.
           2457T]
 gi|281599447|gb|ADA72431.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Shigella flexneri 2002017]
 gi|332762354|gb|EGJ92621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333010581|gb|EGK30014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri VA-6]
 gi|333022338|gb|EGK41576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-304]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|238022302|ref|ZP_04602728.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
 gi|237866916|gb|EEP67958.1| hypothetical protein GCWU000324_02209 [Kingella oralis ATCC 51147]
          Length = 501

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 150/479 (31%), Gaps = 48/479 (10%)

Query: 12  QAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           +A     +    Q  V+G   +  DSR I P + F A +G + DG ++I  A+ +GA  V
Sbjct: 5   KAAPAQPVLPALQHTVSGCQLLHADSRKIQPGDVFIACQGEYADGRNYIADAITRGASFV 64

Query: 69  VVNTDMV-ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
             + D          +P  G+ D+      +A  A         II +TG+ GKT+  + 
Sbjct: 65  YWDDDGAFQWQPEWRVPNQGISDLSQRAGMVAAQAYGNLSGSLKIIGVTGTNGKTSITQW 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGM 169
           L  A+ ++++  +C        G    L          +                  + +
Sbjct: 125 LAQAIDNLEQAPSCAIIGTVGNGFFGELQATTHTTPDPVAVQTLIRQFKQQGARSIAMEV 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNY 227
           S  G  ++  + V  H AV T +   HL     + E   A  +   ++GL+       + 
Sbjct: 185 SSHGLAQYRVNGVPFHTAVFTNLTRDHLDYHGSMAEYGAAKERLFYWQGLQNAIINSDDA 244

Query: 228 DDSFFELLKAKS------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +       +               Y++G ++ AD  +  +    E   + +       
Sbjct: 245 FGAALAAELKQHSGSLKTEGCNEVKTYTYGFNEQADICITCFAANREGMSISLATPWGEG 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   AQN    LG +     D   A+ ALS   P  GR               
Sbjct: 305 SAQTRLLGRFNAQNFAAALGALCAAGYDFQAALTALSRIRPATGRMDCIIQPDKPLVVVD 364

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A   ++     +        E R   V G     G         L   ++    
Sbjct: 365 YAHTPDALEKALTTLREIQQ-----PESRLWCVFG----CGGDRDRGKRPLMGEVAARLA 415

Query: 402 SHVWLSGFHVL------ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               ++  +         + D LP   H                +     D+V++  K 
Sbjct: 416 DKAVVTSDNPRTEDPQAIIADILPAVPHPALVEADRKAAIEQTIAQAQAQDIVLIAGKG 474


>gi|26246018|ref|NP_752057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227885010|ref|ZP_04002815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
 gi|30316044|sp|Q8FL67|MURE_ECOL6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|26106415|gb|AAN78601.1|AE016755_101 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli CFT073]
 gi|227837839|gb|EEJ48305.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 83972]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|215485251|ref|YP_002327682.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215263323|emb|CAS07638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-diaminopimelate
           ligase [Escherichia coli O127:H6 str. E2348/69]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|323181782|gb|EFZ67195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1357]
          Length = 490

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 144/468 (30%), Gaps = 43/468 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
              +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      
Sbjct: 6   APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
           A+ G +     +PV  +  +   L+ LA            ++ +TG+ GKTTT ++L   
Sbjct: 66  ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125

Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175
              + + +       N  +G  +              E             + +S  G +
Sbjct: 126 SQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLV 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++   +V T ++  HL     +E   +AK  ++        I    D+     L
Sbjct: 186 QHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWL 245

Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                A+ +        + +  + +          + +         E+  H +G     
Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  GR + +              + +A      
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
                L     H  G+   V G     G         L   ++        ++  +    
Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +  + H    E              + DVV+V  K 
Sbjct: 415 EPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|153803323|ref|ZP_01957909.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
 gi|124121141|gb|EAY39884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-3]
          Length = 512

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +            +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VAKPNTAQAIWARH--VAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|312966213|ref|ZP_07780439.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|312289456|gb|EFR17350.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 2362-75]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|91209149|ref|YP_539135.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|117622371|ref|YP_851284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218557025|ref|YP_002389938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli S88]
 gi|237704234|ref|ZP_04534715.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|91070723|gb|ABE05604.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli UTI89]
 gi|115511495|gb|ABI99569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli APEC O1]
 gi|218363794|emb|CAR01454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|226902146|gb|EEH88405.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia sp. 3_2_53FAA]
 gi|294490144|gb|ADE88900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli IHE3034]
 gi|323955283|gb|EGB51056.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli H263]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|255746921|ref|ZP_05420866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262161536|ref|ZP_06030646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
 gi|262168387|ref|ZP_06036084.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|12644485|sp|Q9X6N4|MURE_VIBCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|255735323|gb|EET90723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholera CIRS 101]
 gi|262023279|gb|EEY41983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC27]
 gi|262028847|gb|EEY47501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae INDRE 91/1]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 25  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 85  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 432 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|110640298|ref|YP_668026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|191174585|ref|ZP_03036079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|306815317|ref|ZP_07449466.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|331661131|ref|ZP_08362063.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
 gi|110341890|gb|ABG68127.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Escherichia coli 536]
 gi|190905132|gb|EDV64777.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli F11]
 gi|222031916|emb|CAP74654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 [Escherichia coli LF82]
 gi|305850979|gb|EFM51434.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli NC101]
 gi|312944691|gb|ADR25518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052173|gb|EGI24212.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase) [Escherichia
           coli TA206]
          Length = 495

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|229507532|ref|ZP_04397037.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229512272|ref|ZP_04401751.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229519408|ref|ZP_04408851.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229607038|ref|YP_002877686.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
 gi|229344097|gb|EEO09072.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae RC9]
 gi|229352237|gb|EEO17178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae B33]
 gi|229355037|gb|EEO19958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae BX 330286]
 gi|229369693|gb|ACQ60116.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MJ-1236]
          Length = 499

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 29  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 89  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 269 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 436 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|226360235|ref|YP_002778013.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238720|dbj|BAH49068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus opacus B4]
          Length = 524

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/490 (16%), Positives = 147/490 (30%), Gaps = 57/490 (11%)

Query: 6   TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60
           T   L            G      V G+  D R+  I   + F A+ G    G +F   A
Sbjct: 16  TVSALAALAGARVEAPSGTAEHVIVTGV--DLRAQGIVEGDLFAALPGARAHGAEFAADA 73

Query: 61  VQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
           + +GA  ++ +   +A + +L    PV   DD  G L +L+     R   K  +I ITG+
Sbjct: 74  LDRGATAILTDEAGLALVSALGTDAPVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGT 133

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160
            GKTTT  ++  AL++  +T   +G+    +                   L    +   +
Sbjct: 134 SGKTTTSYLVEGALNAAGRTTGLVGTIETRMSGRRVPSALTTPEAPQLHALFAVMLEQGI 193

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLE 218
           D  + E+  SH   +  +   VR  +   T ++  HL      E+   A A+    E   
Sbjct: 194 DTVVMEV-SSHALSLGRV-DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAAESSV 251

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +  DD +   +   +              +               S  +     
Sbjct: 252 HAQHAVICVDDVWGRRMAEVARGAHSIVTTVATTPETGGAVWTAGPATVSASGSQKFALT 311

Query: 279 KSMEVVHHGIGY-HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +               N+      V++          A++     +  G+  R    Q 
Sbjct: 312 TAEGTTLDVELRLPGQYNVANASLAVALCAVLGVDPRDAVAGIAGVDVPGRVQRIDRGQD 371

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           F  ++D ++            V++ +     GR   V+G     G    +    L    +
Sbjct: 372 FLAVVDYAHKPAAVEA-----VIATLREQARGRVAVVVGA----GGDRDAGKRPLMGAAA 422

Query: 398 LYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVD 443
                 + ++           ++ A+              V                   
Sbjct: 423 ARGADLLIITDDNPRTEDPATIRAAIREGALGVPESERGQVWEVADRAKAIADAVGWAQA 482

Query: 444 GDVVVV--KS 451
           GDVV+V  K 
Sbjct: 483 GDVVLVAGKG 492


>gi|254226624|ref|ZP_04920204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
 gi|125620843|gb|EAZ49197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae V51]
          Length = 512

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 146/456 (32%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA LV+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANLVLAEADAQHINGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHEAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHTCQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             + +  +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKNALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|153214092|ref|ZP_01949226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|153826880|ref|ZP_01979547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
 gi|124115518|gb|EAY34338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 1587]
 gi|149739296|gb|EDM53552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae MZO-2]
          Length = 512

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|241889524|ref|ZP_04776823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
 gi|241863831|gb|EER68214.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase [Gemella
           haemolysans ATCC 10379]
          Length = 498

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 165/474 (34%), Gaps = 32/474 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D++  I+  +I       VN IS DSR +   + F AIKG   DGH++I   +++G
Sbjct: 1   MNILDIIDNIKVKTIYGNLPESVNNISQDSRKVGEGDVFVAIKGYTVDGHNYIEKVIEQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A LV+ +     ++ + ++ V    ++    + +A      S    +A+TG+ GKT+   
Sbjct: 61  AALVIASRYENYNVENCAVIVIKEHEIEKVASMIAKKINEGSNVHTVAVTGTNGKTSIST 120

Query: 125 MLTIALSSIKKTYACI--GSYNNHIGVPLTLARMPVDV---DFGIFEL----------GM 169
           ++   L ++ ++ A I    +  +   P+       DV      I EL            
Sbjct: 121 LVHNMLRTLGESSAYIGTNGFGKNDAEPVYFGNTTPDVVTLHNQIGELRRDNIKNLAFEA 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD- 228
           S         + V   +A+ T +   HL     ++  A  K+ +F  L    +       
Sbjct: 181 SSHAMALGRIYNVDIDVAIFTNLTHEHLDFHGDMQTYAYDKSLLFSTLGNNLSEAKYGVL 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +      K  S  L  + I        ADF     KQ  E    +      S E      
Sbjct: 241 NKDDSYYKVISKCLYQQEINYSIVDNTADFYAYNIKQYKEDKVYKTSFTLNSPEGTFECT 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             ++   M+  +    I       +++ L    PK G        +       I   +  
Sbjct: 301 TNYIGDFMVSNVLAALIAVWVKGYSVEQLVAILPKLGALYGRMEIIGDDLPIDIISDFAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P   +  +    ++    +G+R  ++  M   G    S    + +++S     +V ++ 
Sbjct: 361 TPDGYEKLLEATREMR---KGKRTLLVTGMG--GGRDISKGPLIGDIISEA--DYVVITT 413

Query: 408 ----GFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDVVVVKSSNS 454
                  V  L  ++ + +     E           I      GDVV++ +S  
Sbjct: 414 DSPRDEDVEVLMGSIEKGMTHKNYEKVWFRTDAVKRIIELSEPGDVVIL-ASKG 466


>gi|332707250|ref|ZP_08427303.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
 gi|332353984|gb|EGJ33471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya majuscula 3L]
          Length = 506

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 159/484 (32%), Gaps = 47/484 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL  I        P      V GI  +S +  P + F  + G   DG +F   A+
Sbjct: 1   MKLRELLAKIANIVEIPSPEGLDVTVTGICTNSHACQPGDLFIGMPGTRVDGGEFWESAI 60

Query: 62  QKGAGLVVVN------TDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAI 113
             GA   +++                 + V   DD   + A    A       K  +I +
Sbjct: 61  ASGAVAAIISPQAAAKHPPQELSPETGVCVIAADDMTTVSAQTAAAFYDYPAQKLRLIGV 120

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------- 166
           TG+ GKTTT  ++   L+              +   P           F +         
Sbjct: 121 TGTNGKTTTTHLIEFLLAHSSSPIPTALLGTLYARWPGFEQTASYTTPFAVQLQQQLQLA 180

Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                    + +S     +         +AV T +   HL     +++  SAKA++F   
Sbjct: 181 VKAGAQMAVMEVSSHALAQGRIQGCPFEVAVFTNLTQDHLDYHQNMDDYFSAKAKLFSSD 240

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +N DDS+ E L  +      +      ++ +ADF  +            +   
Sbjct: 241 YLKGRAIINADDSYGERLIQQL--PTEQVWSYSIQNPSADFWTKDLSYEPTGVRGIMHTP 298

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
              +      +G +   N+L  +G V  L  D++    AL+ F    GR +R +    Q 
Sbjct: 299 VGEVSFNSPLVGQYNLSNLLAAVGTVLELGLDLELVAAALAQFPGVPGRMERVQIQPEQD 358

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++  +        ++L    P  EG+ I V G     G+  ++    + ++ +
Sbjct: 359 ISVIVDYAHTPDSLE-----NLLRASRPFIEGKMICVFG---CGGDRDRTKRPKMGKIAA 410

Query: 398 LYNISHVWLSG----FHVLAL----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 V  S      +  ++     + +P+S+                     GD V++
Sbjct: 411 QLADVAVVTSDNPRTENPESILEDVLEGIPQSVEPMVICDRATAIRTAILQAKPGDGVLI 470

Query: 450 --KS 451
             K 
Sbjct: 471 AGKG 474


>gi|329901107|ref|ZP_08272723.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549206|gb|EGF33794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 509

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/491 (16%), Positives = 157/491 (31%), Gaps = 59/491 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNP      ++  ++              +S DSRSI   + FFA  G   DG  FI  A
Sbjct: 3   MNP----EHIVDWLRAT-------APAAELSSDSRSIVAGDVFFAYPGDAADGRRFIDDA 51

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +++GA  VV   D +   G+   P+  V  +     ++A     ++      +AITG+ G
Sbjct: 52  IERGAVAVVCEADGLVWHGAADFPLLAVTGLKAHAGRVAALWYGQADAGLFTVAITGTNG 111

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGIF---------- 165
           KT+  + L  ALS +    A IG+        G    LA         I           
Sbjct: 112 KTSCSQWLAAALSRLTGPCAVIGTLGTGLFRRGSVDRLAETGYTTPDAILLQRRLRDLRR 171

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  +  S +G  +   + +   +A+ T     HL     +    +AK  +F+    
Sbjct: 172 AGASALAIEASSIGLDQGRLNGLPVQVALFTNFTRDHLDYHGDMATYEAAKTALFDQPGL 231

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-----QLRKWKQCSEQSWMEV 274
              +    D     LL           +  +  +          +    +     +  ++
Sbjct: 232 QHAVLNLDDAMGLRLLAHLQRTAPQLALTGYTLTDLQPAGITVLRAGDIRSSHAGTSFQL 291

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                +M V    +G     N+L  +G++      +   + A+       GR    +   
Sbjct: 292 MTAAGTMLVRTRLVGSFNVSNVLGIIGVLLAQDCPLRAIVDAIETLTAVPGR---MQQFG 348

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q    ++ + Y   P ++   ++ L Q++    G+   V G     G            
Sbjct: 349 GQDAPLVVID-YAHTPDALDKTLAALQQVAAQRHGKLWCVFG----CGGDRDPGKRPQMG 403

Query: 395 VLSLYNISHVWLSG-FHVLALKDALPRSIHVH-----------YSETMDGLFLFIQSSLV 442
           + +L     +  S           + +++                E      L+      
Sbjct: 404 LAALAADEIIITSDNPRSEVAAAIIAQTLQGTDERADSHAVPLVIEDRAAAILWAVRHAA 463

Query: 443 DGDVVVV--KS 451
           + DV+++  K 
Sbjct: 464 NADVILLAGKG 474


>gi|229514035|ref|ZP_04403497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
 gi|229349216|gb|EEO14173.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TMA 21]
          Length = 499

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 152/484 (31%), Gaps = 50/484 (10%)

Query: 1   MNPLWTFHDL----LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           MN      +L    L+              +  + +DSR I   + F AI+G   DG  F
Sbjct: 5   MNTQTALSELIAPWLELTDPKL----ASLVITHLELDSRQIKSGDTFVAIQGHAVDGRQF 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           I  A+ +GA  V+   D   + G +    ++PV  + ++   L+++A          +I 
Sbjct: 61  IDKAIAQGANAVLAEADAHHAHGQVEYREAVPVMYLSELDQHLSEMAGRLYGGHHNQLIG 120

Query: 113 ITGSVGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVD----- 161
           +TG+ GKTT  +++   L       ++  T               T   + +        
Sbjct: 121 VTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLA 180

Query: 162 ---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                   L  S  G ++     +     V + ++  HL     +E  A+AK  +F    
Sbjct: 181 ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHA 240

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               I    D    + +K    A+G+  +     ++    +  +         +  +   
Sbjct: 241 CQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAR--EVAYAESGITLNFESSW 298

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E+    IG   A N+L+ L  +  L  +    +       P  GR + ++       
Sbjct: 299 GEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKM 358

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 + +A           L  +  H  G+  A++G     G         +   ++ 
Sbjct: 359 VVDYAHTPDA-------LEKALRALRVHCAGQLWAIVG----CGGDRDRGKRPMMAAIAE 407

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V L+  +            +   L      H          +        D++++
Sbjct: 408 QFADRVILTDDNPRSESPQAIVADMVAGLTHPERAHIEHHRFQAASYALKHAGAQDIILL 467

Query: 450 --KS 451
             K 
Sbjct: 468 AGKG 471


>gi|116070403|ref|ZP_01467672.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
 gi|116065808|gb|EAU71565.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Synechococcus sp. BL107]
          Length = 310

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 20/325 (6%)

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
            +NN IGVPLT+          + E+GM   GEI  L+    P +AVIT I  AH+    
Sbjct: 1   EHNNDIGVPLTVLSADSHHCALVIEMGMRGPGEIERLSRCTEPDVAVITNIGTAHIGRLG 60

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E IA+AK EI   L+  G + +   D+  E   +K  +  +  +     +        
Sbjct: 61  SREAIAAAKCEITAALKPDGVVVIPAGDALLESALSKVWSGRVVRVRLADDTPV------ 114

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                         L+  +  +     G H A+N+L+ L +          ++ A+ V  
Sbjct: 115 --AADCIGVIDAGHLEVGAHRLPLPLEGRHNARNVLLALAVAD-QLGVDSASLNAMEVSV 171

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
           P     +  +  L     TL+DE+YNA+P ++ AA+++L        GRR AVLG M E+
Sbjct: 172 PGGRNRRLVQGRL-----TLLDETYNASPEAVMAALALL----SSQPGRRFAVLGTMLEL 222

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           G  S   H D+A   +   +  + +   G    A+ +A     H+    + +     ++ 
Sbjct: 223 GAQSLQLHADVATQAAALKLDGLVVVDGGAEGRAMANAAAGLPHLAVVSSPEDAAKPLKE 282

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLL 464
            L  GDVV++K+S      RL+ LL
Sbjct: 283 WLRAGDVVLLKASRGVALERLLPLL 307


>gi|206890442|ref|YP_002249138.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742380|gb|ACI21437.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 492

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/412 (19%), Positives = 149/412 (36%), Gaps = 25/412 (6%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       ++ I+ +S+ +     FFA+ G   DGH FI  A++KGA  VV  T      
Sbjct: 13  VKGDINKNIDYITYNSKDVKEASLFFAVSGQKADGHFFIEEAIKKGAKAVVYETGHFMPS 72

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +   GV+D   AL+ ++            II ITG+ GKTTT  ++   L    K 
Sbjct: 73  EYADVTWIGVNDSRDALSWISSKFYGNPSERLKIIGITGTNGKTTTSYLIREILKRYDKK 132

Query: 137 YACIGSYNNHIG----VPLTLARMPVDVDFGIFEL----------GMSHLGEIRFLTHLV 182
              IG+    I     V +       +    + E+           +S            
Sbjct: 133 TGVIGTIKYLIDNEEKVAVHTTPEAPEFQELLHEMLVKGVEYVITEVSSHALALKRVDYT 192

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  IAV T ++  HL     +E+  +AK  +F  L K   + +   D  +    A+   L
Sbjct: 193 KFDIAVFTNLSRDHLDFHKDMEDYFNAKKRLFTELLKNEGVAVINFDDVYGRRLAEQ--L 250

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             K I    ++  AD  ++ ++   +++ +     + K + V  H +G     N++  + 
Sbjct: 251 NTKKITYSIENPQADIYVKNYRLNFKETEINLHIKKEKELVVKTHLLGIPNIYNVISAVS 310

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    D    A+S  H  +GR    R    Q F   +D +++ +            
Sbjct: 311 VAVALNIPFDIIESAISDAHSPDGR--FERVDEGQDFLVFVDYAHSPDALERLLISVRKL 368

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +      G+ + V G     G             ++     +V L+  +   
Sbjct: 369 KEEISKNGKIVTVFG----CGGNRDRGKRPQMGKIATELSDYVILTSDNPRW 416


>gi|126658487|ref|ZP_01729635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
 gi|126620229|gb|EAZ90950.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. CCY0110]
          Length = 490

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 147/458 (32%), Gaps = 43/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-IGSLS 82
           +  V GIS +S +    + F  + G   DG +F   A++ GA   +++         +  
Sbjct: 17  ERDVKGISTNSHACQTGDIFIGMPGTRVDGGEFWQSAMEVGATAAIISPQAAEKFPPNDD 76

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK----- 135
             V  VDD++    ++A A       +  +I +TG+ GKTTT  ++   L   +K     
Sbjct: 77  QCVIIVDDLITVAAEIAAAFYGHPAQQLKMIGVTGTNGKTTTTHLIEYFLGQSQKPTALI 136

Query: 136 ---TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTHLVRP 184
                   G     I        +          + ++ + E+  SH      +      
Sbjct: 137 GTLYTRWPGFEQTAIHTTPFAPELQEQLAQAVAANNEYCVMEV-SSHALAQGRVKQCP-F 194

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V T +   HL     +E+  SAK  +F          +N DD + + L         
Sbjct: 195 KVSVFTNLTQDHLDFHKDMEDYFSAKQLLFTPDYLQEKAIINLDDPYGKRLIESF--KPE 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +       +  ADF               +     S+E     +G     N+L  +  V 
Sbjct: 253 QVWSYSVSNAEADFYTSDLTYRGNGVTGTLYTPLGSVEFSSPLVGQFNLSNVLAAVSAVL 312

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D+   I++L  F    GR +R +    Q    ++D ++  +        + L    
Sbjct: 313 HFGLDLTETIESLPHFLGVPGRMERVQINEKQDISVIVDYAHTPDSLE-----NSLKAAR 367

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           P  +G+ I V G     G         L    S        ++  +            + 
Sbjct: 368 PFVKGKLICVFG----CGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDIL 423

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +S+                     GD V++  K 
Sbjct: 424 TGISQSVEPLVISDRAEAIKTAILQAKPGDGVLIAGKG 461


>gi|291571420|dbj|BAI93692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Arthrospira platensis NIES-39]
          Length = 498

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 156/461 (33%), Gaps = 45/461 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135
           S +IP V    D+  A  ++A A          ++ +TG+ GKTTT  ++   L+++ K 
Sbjct: 81  SDTIPCVIPAADMTKACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLTNVDKP 140

Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180
                       G     +        +             FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 201 PFQ--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARL- 257

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G +         +AD                +     S       +G +   N+L  L
Sbjct: 258 -GGDRVWSYSVSDPSADIWADSLVYQPTGIQGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D+   +  L  F    GR +R + +  Q    ++D ++  +        ++L
Sbjct: 317 GAGLALGLDLSAMVDCLPAFGGVPGRMERVQISPEQNITVIVDYAHTPDSLE-----NLL 371

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD 416
               P   GR I V G     G+  ++    + ++ +  +   V  S          +  
Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428

Query: 417 ----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +P  +                     GD V++  K 
Sbjct: 429 DVLAGIPDHVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469


>gi|229917213|ref|YP_002885859.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
 gi|229468642|gb|ACQ70414.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium sp.
           AT1b]
          Length = 485

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/454 (16%), Positives = 134/454 (29%), Gaps = 47/454 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
             +V G+  DSR ++    F  I+G   DGH F   AV  GA  V+           L +
Sbjct: 19  DPWVTGVETDSRKVSSGNVFICIRGYTVDGHKFAEDAVANGASAVISE-----YPLDLDV 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTI------------A 129
           P   V D      ++A            I  +TG+ GKTTT  +               +
Sbjct: 74  PNVVVADTKQTAGEVASVFYDHPSHRMRIYGVTGTNGKTTTATLTYDLLRLSGRRAGIVS 133

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187
               +     I + N      +    +   VD G+ +  L +S    +      +  H A
Sbjct: 134 TIGARFHNQTIETANTTPEAVVLHRILAEMVDAGVTDCVLEVSSHALMEGRVAGIHFHAA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     ++E A AKA +FE +E T    +  +            A   + I
Sbjct: 194 AFTNLTHDHLDYHRSMDEYARAKARLFEQVEVTNGEAIVLNAEDSASHVMAEFAPTRRAI 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                    D +        +++ +    + K    V     ++ A        +     
Sbjct: 254 MYSTT---VDVEADVQVIWRDETVLVRMKEFKLEVPVRFMGAFNAANLAAAIGLVS---- 306

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    +S          R      +     ID ++  +      +           
Sbjct: 307 TSDMALRTIVSNVPGLTLPKGRLERLATEDAEIYIDYAHTPDGLEKCLSTL------QQD 360

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALP 419
           +   + VL      G+   +   D+  + S Y+   +              +  L   + 
Sbjct: 361 DRALVVVLSAA---GDRDPTKRQDMGRIASRYSNEVIVTVHDVRMEDPKQIIRDLVKGIQ 417

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +     E  +       +  ++G  VVV  K 
Sbjct: 418 PDVKYVTFEAREEALRHAATQALEGKRVVVVGKG 451


>gi|49485793|ref|YP_043014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|56749205|sp|Q6GAQ9|MURE_STAAS RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49244236|emb|CAG42662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MSSA476]
          Length = 494

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPCEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|78221628|ref|YP_383375.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
 gi|123572782|sp|Q39YM4|MURE_GEOMG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|78192883|gb|ABB30650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter metallireducens GS-15]
          Length = 511

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 149/492 (30%), Gaps = 59/492 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + I     G      + G+  DSR +     FFA++G   DGHD+I+ +  +G
Sbjct: 1   MRLEDLARVINPSEAGGSLALEIEGLYCDSRQVRSGGLFFALRGVATDGHDYIVASRDRG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VVV      S     +    VDD   A+++ A A          ++ ITG+ GKTTT
Sbjct: 61  AVAVVVEDP---SRVPEGMTWLKVDDARLAMSRAAAAFYGNPTDGIPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++   ++      A +G+ +   G               +   +   +        + 
Sbjct: 118 TYLVEAVMARAGIPVAVLGTISYRFGDKTIPAPHTTPESVDLQRTIRDLVDRGAQGVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLN 226
           +S     +      R  + V T +   HL     +E    +KA +F              
Sbjct: 178 VSSHALEQRRVDGCRFDVGVFTNLTRDHLDYHRDMESYFESKARLFTELLAADDTKPRRA 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A+  +  +  + S+G S +   +        +     +     ++     
Sbjct: 238 AVINVDDPYGARLASDAVAPVVSYGLSPSVMVRAEMVTFSVDGISGTLVTPLGTIPFHSR 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +     L    D     +       GR        N    T++ +  
Sbjct: 298 LLGRFNLYNILAAVAAGVALGLSPDAIRGGIEGDVRVPGR---LERVDNDHGITVLVDYA 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL  ++    GR I V G     G         +   ++        +
Sbjct: 355 HTGDA----LENVLKTVAEIATGRIITVFG----CGGDRDRGKRPVMGEIAGRFSDLSIV 406

Query: 407 SG-----FHVLALKDALPRSIH--------------------VHYSETMDGLFLFIQSSL 441
           +          A+   +   I                         E+            
Sbjct: 407 TSDNPRTEDAGAIIGEILGGIRSLGLREYGAEELITGFDAKGFAAVESRREAIRLAARVA 466

Query: 442 VDGDVVVV--KS 451
             GDV+++  K 
Sbjct: 467 RPGDVLLLAGKG 478


>gi|325954321|ref|YP_004237981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
 gi|323436939|gb|ADX67403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Weeksella virosa DSM 16922]
          Length = 488

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 166/479 (34%), Gaps = 48/479 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L T    L  I   +IG      V  +  DSR     + F AIKG   DGH +I   
Sbjct: 1   MKQLTTILTNLSII--KTIGDAEGVLVGELIFDSRKAKKGDVFVAIKGTQTDGHSYIEQV 58

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
            + G  ++V    ++  I   +I    V+D   AL  +A            ++ ITG+ G
Sbjct: 59  TEIGVSVIVCE--VLPEIQKENIVYVLVEDASIALGVMASNYYDNPTKNLQLVGITGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGI 164
           KTTT  +L    + +      + +                  I     + R  VD     
Sbjct: 117 KTTTTSLLYELFTKLGYASVLVSTIQIVVDGDIIPTQNTTPDIVTLNRIFRQAVDKGCEY 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G ++     +   +A  T I   HL      +    AK + F+ L  +    
Sbjct: 177 AFMEVSSHGIVQNRIAGLYFRVAAFTNITHDHLDYHITFQNYIQAKKKFFDELPASTKAL 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD    ++   + A      + F    +A+F+ +  +   +     + L     E  
Sbjct: 237 VNLDDRNGRVMLQNTVASK----HFFTLKGDAEFKGKILESRFDG----MLLNFNQQEFW 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + IG   A N+L+  GI  +L  +    +  LSV    EGR + +    ++        
Sbjct: 289 TNLIGQFNAYNLLLVYGIAHLLGQEDTEVLTILSVLGSVEGRFQTFHTQGDRVIIVD--- 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  +  I    E     V       G+  ++   ++A++ +  +   +
Sbjct: 346 -YAHTPDALENVLDTIGGIRTKNEQLITVV----GCGGDRDKTKRPEMADIAARKSDLAI 400

Query: 405 WLSG----FHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           + S      +  A+   +   +   + +                      D++++  K 
Sbjct: 401 FTSDNPRTENPEAILADMEAGVEPQFYDKTLKITDRKEAIKTALKMSQKHDIILIAGKG 459


>gi|148269823|ref|YP_001244283.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga petrophila
           RKU-1]
 gi|147735367|gb|ABQ46707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermotoga petrophila RKU-1]
          Length = 490

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 89/485 (18%), Positives = 156/485 (32%), Gaps = 57/485 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------RSK 107
             VVV  ++      L  P   V D      K+A                        + 
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I  +  S+G+  +     +        Y  I + +    +            F   E+
Sbjct: 119 MMIYHMLTSLGEKGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN 
Sbjct: 179 --SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGIAILN- 235

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E L    +        +FG SKNAD++L   +   E +   ++     + V    
Sbjct: 236 -----ESLADTFNRKS--RKITFGTSKNADYRLGNIEVNWEGTRFVLETPDGLLRVFTKA 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG   A N    +  +  L  D      +L  F   EGR +  R A   G   ++D +++
Sbjct: 289 IGDFNAYNAAAAIAALHQLGYDPKDLASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHS 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +L  +    +GR I V G     G  S      +   ++      V L+
Sbjct: 349 PDALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLADVVILT 399

Query: 408 -----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
                G      +  L   + +                  +    GD VV+        Y
Sbjct: 400 TDDPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERY 458

Query: 459 RLINL 463
           ++I+ 
Sbjct: 459 QIIDE 463


>gi|77166317|ref|YP_344842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrosococcus oceani
           ATCC 19707]
 gi|254435084|ref|ZP_05048591.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
 gi|76884631|gb|ABA59312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrosococcus oceani ATCC 19707]
 gi|207088195|gb|EDZ65467.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Nitrosococcus
           oceani AFC27]
          Length = 519

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 150/476 (31%), Gaps = 48/476 (10%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + +    IG V +  ++ +S+DSR +AP   FFA +G    GH  I  AV +GA  +V
Sbjct: 26  LAEWVS---IGAVQERRISSLSLDSRRVAPGALFFACQGTQRSGHGHIGAAVDQGAAAIV 82

Query: 70  ------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
                 V+  +   +   +IP+  + D+   +  +A    LR      ++ +TG+ GKT+
Sbjct: 83  YDPVIPVSPAIQTRLQVQNIPLIPLPDLGARVGIIADRFYLRPSRQVCVLGVTGTNGKTS 142

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------ 169
               L  AL         +G+    +   L  + +       + E               
Sbjct: 143 VSHFLAQALHRQGIPCGLVGTLGKGLVGTLQPSPLTTPDAVTVQEQLAAMAAARIRYTVL 202

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  E   +  +V  + A+ T ++  HL     +    +AK  +F   E    +   
Sbjct: 203 EVSSHALEQGRVNGVV-FNTAIFTNLSREHLDYHGDMVRYEAAKFRLFNQPELRHAVINI 261

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D +    L      +   +        N    L   +   ++  + + +Q    E    
Sbjct: 262 DDVAGRAFLANLPSEVAAISYG----ITNPQANLWASELHCDRYGIAMTVQSAWGEGQLT 317

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N    L  +  L        +AL           R      +    L+   Y
Sbjct: 318 CSLLGRF-NAYNLLAALGGLLVVGMPFTEALQRLSQVRAVAGRMEAFGEKEGEPLLVVDY 376

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  L  +     GR   V G     G         L    +      V L
Sbjct: 377 AHTPDALEQVLCSLQ-MHLGPGGRLWCVFG----CGGDRDRGKRPLMGAAAERLADFVIL 431

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +   +     V+   +     +         D+V++  K 
Sbjct: 432 TDDNPRDEDPIQIIIDILSGIHNPDRVYQFRSRSEAIIRATQLAGPEDIVLIAGKG 487


>gi|311280935|ref|YP_003943166.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
 gi|308750130|gb|ADO49882.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter cloacae
           SCF1]
          Length = 495

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/478 (13%), Positives = 139/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERALREMTLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A+ G +     +PV  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSGRLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLSGLAGQGATLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + ++      + E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFASSWGNGEID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +   +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLAGLLSTAARLQPVCGRMEVFAAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIITDILAGMLDAGHAKVMEGRAEAVTNAIMQAKENDVVLVAGKG 467


>gi|317970555|ref|ZP_07971945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0205]
          Length = 503

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 133/476 (27%), Gaps = 37/476 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+ +       +  G V G+S DSR + P   F  + G   DG  F   A+Q GA 
Sbjct: 5   LHSLLREVGLAVPPGLGNGDVQGVSCDSRRVCPGTVFVGLPGATVDGGTFWPEALQLGAA 64

Query: 67  LVVVNTDMVASIGSLS-IPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKT---- 120
           L V+      +        V  V D +      LA     +       I  +        
Sbjct: 65  LAVIGRSAAEARPPADGDAVLVVSDPVSRWAGLLAAEFWQQPSQRTALIGVTGTNGKTTT 124

Query: 121 --TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA----------RMPVDVDFGIFELG 168
               + + +            I  +  H                   +  +    I  + 
Sbjct: 125 TYLLEHLASACGYPAALFGTLINRWPGHSITAQHTTAFADELQAQLALAAESGARIAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
           +S     +      R   A+ T +   HL     +E    A AK      L       +N
Sbjct: 185 VSSHALDQQRISGCRFAGAIFTNLTQDHLDYHPSMEAYFEAKAKLFAAPLLAPEARAVVN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + L  +          S     +AD ++   +  S+     +            
Sbjct: 245 VDDPWGKQLAERLGDR--CWRASLEPDSDADLRMEALQMGSQGVSGTLITPLGRGAFSSP 302

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +G++      +   ++AL  F    GR +R + A             
Sbjct: 303 LLGKFNLMNLLEAVGVLLQQGLPLGAMLEALGSFKGVPGRMERVQVARADCGDAAAPAVL 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                +     S L    P  EG+ I V G     G             ++      V +
Sbjct: 363 VDYAHTPDGLESALKACRPFVEGQLICVFG----CGGDRDRTKRPQMAAIAARLADQVLV 418

Query: 407 SGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +   +P    V              +     D+V++  K 
Sbjct: 419 TSDNPRTEDPEQILKDVLAGIPEGTPVQVDVDRAQSIAAAIAMAGPKDLVLIAGKG 474


>gi|218687962|ref|YP_002396174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli ED1a]
 gi|218425526|emb|CAR06309.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Escherichia coli ED1a]
          Length = 495

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNEPLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + +    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|317129523|ref|YP_004095805.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474471|gb|ADU31074.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 368

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 89/365 (24%), Positives = 156/365 (42%), Gaps = 15/365 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   + +TGS GK++T   +    ++  K      G+ N        +++   +    +
Sbjct: 6   PRVPAVGVTGSAGKSSTTSFINAIFNTRWKNVLTTKGNMNLPKHTKQAVSQFNRNHKAIV 65

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            E+    LG      + ++P+I VIT +  AH       I+E A AK+ +   +   G +
Sbjct: 66  LEM---GLGRASNHFNYIQPNIGVITNVGTAHYGKLGNSIKETAKAKSAMIRNIHPRGIL 122

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN DD+  +LL  K+    +      G +  +++Q    K  S      V L+GK +  
Sbjct: 123 LLNNDDTNSKLLDYKNFKGDLIR---VGITSKSEYQATNIKYTSYGMIFGVTLRGKKVYF 179

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + I   L   ++     L        R    +         LID
Sbjct: 180 FIPAFGMHNVINALFAIAIADRLNFSINEMKLGLRSCKSPSRRVNVIK-LSKPKGALLID 238

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++NANP S+KAA+ VL+++    +   IAVLG M E+G+ S+  H ++   L+   I H
Sbjct: 239 DTFNANPQSVKAAVDVLAELGNKKKK--IAVLGSMLELGDYSKKGHQEVGAYLAKKGIKH 296

Query: 404 VWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           V+L G +   +K A   +     ++ ++   D L   I   L +G VV++K S+     R
Sbjct: 297 VFLYGKNASYVKTAAIENGIPEKNILHTTNRDKLHYGILRVLNEGCVVLIKGSHKMKMSR 356

Query: 460 LINLL 464
               +
Sbjct: 357 TAEYI 361


>gi|264680251|ref|YP_003280161.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
 gi|262210767|gb|ACY34865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           CNB-2]
          Length = 501

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/430 (16%), Positives = 143/430 (33%), Gaps = 38/430 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    + +  ++    G         +  DSR +   +AF A  G   DG  ++  A+++
Sbjct: 8   LNNAAEAVAWLRSRVQGD--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGKALEQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  ++V  D + +       +  +  +  A   +A            ++A+TG+ GKTT
Sbjct: 60  GAAALLVEADGLQAFDLSGDSIAALKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163
           T   L  ALS +        +    +GV                       R   D    
Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S +G +       +  +A+ T     HL     ++    AKA++F+       +
Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPAAV 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D     L            ++S      A  Q +      E     V   G S+ +
Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +   N+L  L  +  L   ++ A++A +   P  GR ++              
Sbjct: 298 NTRLVGQYNVSNLLGVLATLRCLGLTLEQAVQACADLEPVPGRMQQIVKPGQPLVAVD-- 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L   +   +G+   V G     G    +    L    +  +   
Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQAHADG 409

Query: 404 VWLSGFHVLA 413
           V+++  +  +
Sbjct: 410 VFVTSDNPRS 419


>gi|62178690|ref|YP_215107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|75484869|sp|Q57TD5|MURE_SALCH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|62126323|gb|AAX64026.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713143|gb|EFZ04714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 495

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 150/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  ++ +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVVYLNQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +     + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTNLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRTEAVTNAIMQAKDNDVVLIAGKG 467


>gi|157412825|ref|YP_001483691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157387400|gb|ABV50105.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9215]
          Length = 514

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/480 (16%), Positives = 148/480 (30%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  F + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDYEINNISFNSKEVQKGTLFLGMPGLNVDGGKFCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++ +     IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKERIGSIDRERILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G             ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALFGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225
           +S     +          A+ T +   HL   S +E     K          EK G   L
Sbjct: 186 VSSHSIAQKRISGCEFEAAIFTNLTQDHLDYHSDMESYFQTKRKLFFPPYLREKDGISVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N+DD +   L     K  +L    I       +  F +   K     S        + ++
Sbjct: 246 NHDDHWISKLSSDLEKRSSLVSTKITESEFENDDFFFVTDKKFTESGSTCIFHTPREKIQ 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++ +   +    +L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIQIDDSDVSRSLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    EG+ I V G     G         L   ++     
Sbjct: 366 TVIVDYAHTP-DGLKKVLQSIKKLCEGKLITVFG----CGGDRDRSKRPLMGSIAEELSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++++  +            +   + +   +                    D++++  K 
Sbjct: 421 QLFITSDNPRSEEPQKIVNDILMGIKKREKITIEIDRFKAINESIKFANKKDIILIAGKG 480


>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
          Length = 734

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/461 (15%), Positives = 158/461 (34%), Gaps = 32/461 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60
           T   L + +            +   +   + I P  A+FA                   A
Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVAA 342

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA +++    +        IP   V ++  AL++ AV  +       +A+  S  K 
Sbjct: 343 FEKGASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
               M+   LS+  +T   I   NN+  +   +       +  +  +   + G +  ++ 
Sbjct: 397 NPLSMIEQMLSNKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQ 456

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +A++T+   +         E+   K ++  G+ ++G + +N DD     +     
Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    +     ++ AD+     +    +   ++     +  +  +    H     L T 
Sbjct: 517 DIITIGV----DNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  I+       I A+  + P  G         N+    +I +  N    S+  A+  L
Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGTALKEL 628

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
             +    + RRIAVL ++ +  E     +  +  +++  ++      G     L      
Sbjct: 629 CTMPLSPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADL 688

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +S  V    T   L  F++ +L + D V+ K S       +
Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRNNDAVLFKGSTVTELDEI 729


>gi|21282628|ref|NP_645716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|297208349|ref|ZP_06924779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912425|ref|ZP_07129868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|24212030|sp|Q8NXC2|MURE_STAAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21204066|dbj|BAB94764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|296887088|gb|EFH25991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886671|gb|EFK81873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 494

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYSVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|88811843|ref|ZP_01127096.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
 gi|88790727|gb|EAR21841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nitrococcus mobilis
           Nb-231]
          Length = 502

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 168/481 (34%), Gaps = 54/481 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ +         +  ++G+++DSR++ P   F A++G  + G +F   A+ +GA 
Sbjct: 12  LRGLLEPLGIE----ADERPIHGVAVDSRAVRPGYLFMAVQGTLHHGGEFAAEALSQGAA 67

Query: 67  LVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
            ++        +  + A     ++P   V  +   +  +A           T+I +TG+ 
Sbjct: 68  AILWQPTPGFDDQALSARCAKQAVPCIAVHSLHAQVGIIAARFYGDPGANMTVIGVTGTD 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNN----------------HIGVPLTLARMPVDVD 161
           GKT+  + +  AL   +     +G+                    I +   L ++     
Sbjct: 128 GKTSVSQFIAHALGRKEYRCGILGTLGCGLPGHLRRVTSLTTPDPITLQCELNQLRARHA 187

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +     SH  + + L  +    +AV+T ++  HL         A AKA +F+   +  
Sbjct: 188 QAVVIEVSSHALDQQRLAGVG-FDVAVLTNLSRDHLDYHPSQAAYAQAKALLFQR-PELH 245

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T+ +N DD F   L+A      +   YS    + A  +  +    S+   + +   G   
Sbjct: 246 TVVVNVDDDFGRSLRASVRHARV-IGYSLAGIETAQLRCLRLAAQSDGLRLLLDAGGCRA 304

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G   A N+L  LG +  L   +  A++ LS+  P  GR +RY           
Sbjct: 305 AVRVGLLGRFNAANVLAALGALLALDVPLREALQRLSLLQPVSGRMERYGSEGRPTVVID 364

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +            + L+ +  H  GR   V G     G         L   L+  + 
Sbjct: 365 YAHTPAG-------LQAALAAMREHFAGRIWCVFG----CGGDRDRGKRPLMGALARASA 413

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             + ++  +            ++        V   E      +    +    D ++V  K
Sbjct: 414 DRIIITNDNPRTENPRRIIAEIQAGAGADSRVRVIEDRREAVIHSIRAAAPEDAILVAGK 473

Query: 451 S 451
            
Sbjct: 474 G 474


>gi|225629826|ref|ZP_03787749.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
 gi|225591321|gb|EEH12438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Muscidifurax uniraptor]
          Length = 352

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 92/355 (25%), Positives = 156/355 (43%), Gaps = 51/355 (14%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + I E+GM+  GEI+ L+ +  P+IAVIT I PAH  NFS + ++A AK EI  G++  G
Sbjct: 1   YLILEMGMNKAGEIKELSKISNPNIAVITNIEPAHTENFSSLFDVAQAKLEILYGMKNNG 60

Query: 222 TIFLNYDDSFFELLKAKSHAL--------------------------------------- 242
           T+ L+ D+ +++ L + ++                                         
Sbjct: 61  TLVLSRDNKYYDYLSSHANRNVISFGKDKNAEVCLLNLIRNDESSVISALSSVIPVLDYL 120

Query: 243 -------GIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                         + K      +  +   +  +  S        + +       G H A
Sbjct: 121 DPGSSIANEHIRRLYNKDWIPASRAGMTSNRVANRLSLKIRLSDNQIINCNLRVQGEHFA 180

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            ++L    +V  L  D+     AL  F   +GRG  ++   N+ +  LID+SYNA+PASM
Sbjct: 181 YSLLAVAAVVQSLGLDLSKLPLALKNFSVAKGRGNIHKVKYNKKYIHLIDDSYNASPASM 240

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           K AI  LS  S   +   IA+LGDM E+G+ S  FH DL ++++  NI  V+  G  +L 
Sbjct: 241 KTAIKTLSTYSNQRK---IALLGDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLE 297

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           L + LP +I   +    + L   + + + + D ++VK S       ++   + ++
Sbjct: 298 LHELLPDNIRGTHFNDSNQLKSDLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 352


>gi|261253812|ref|ZP_05946385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
 gi|260937203|gb|EEX93192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio orientalis CIP 102891]
          Length = 494

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/480 (15%), Positives = 147/480 (30%), Gaps = 43/480 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+   T   LL   Q  S        V  + +DSR +     F A+KG   DG  FI  A
Sbjct: 1   MSKELTLAALLSPWQNISADKSANIAVQHLELDSRKVTNGTTFVAVKGHAVDGRRFIASA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           ++ GA  V+  +      G++     IPV  +  +   L+ LA       +  II +TG+
Sbjct: 61  IELGANAVIAESCEQHLAGTIEYIDTIPVIYIAQLGTHLSALASRLYPLHEHQIIGVTGT 120

Query: 117 VGKTTTKEMLTIALS------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
            GKTT  +++   L       ++  T       +       T   + +       E    
Sbjct: 121 NGKTTITQLIAQWLELIGKKAAVMGTTGNGFLDDLQPAANTTGNAIEIQQTLHQLEQQSA 180

Query: 170 -------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                  S  G ++     +   + V + ++  HL     +EE A AK  +F        
Sbjct: 181 QFTALEVSSHGLVQGRVKALDFAVGVFSNLSRDHLDYHGTMEEYAEAKFSLFSEHNCHNA 240

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D      ++   +A+ +    +  +       +   +     S   +   G  + 
Sbjct: 241 VINIDDQVGSRWVERLDNAIAVSLKPTAIERAVWAKSVAYSESGISLSIDGMFGAGDCVV 300

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +            + TL  + I    +     +L     +         A     +   
Sbjct: 301 PLIGEFNASNVLLAMTTLLALGIDKQLLLETASSLKPVLGRMELFTAENKAKVVVDYAHT 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            ++              L+ +  H +G+  A+ G     G    +    +   +      
Sbjct: 361 PDAL----------EKALNALRVHCQGQLWAIFG----CGGDRDTGKRPMMAAIGERLAD 406

Query: 403 HVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +            +   + +        +      F  ++    D++++  K 
Sbjct: 407 RVILTDDNPRSESPAEIVKDMLVGMNQPDTAVVEHSRFDALQFALANSHADDIILLAGKG 466


>gi|238786718|ref|ZP_04630519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725086|gb|EEQ16725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Yersinia frederiksenii ATCC 33641]
          Length = 471

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 74/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS----LSIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   VV   D VA   S      +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVVAEADGVAPDASMAEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + ++   L+KLA     +      ++ +TG+ GKTTT ++L     ++ + +       
Sbjct: 62  YLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWGQALGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G I+     +    AV T
Sbjct: 122 NGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F   +    I    D+     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIINADDEVGRRWLSQLPQAVAVSMENNV 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +    +       + +         +     +G     N+L+ L  +  L   
Sbjct: 242 PAGWKGPWLSATQVDYHDNGASISFDSSWGQGQFESRLMGAFNVSNLLVALSTLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + A     P  GR + +              + +A           L+    H +G
Sbjct: 302 LAQLLAAAPQLLPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSEEPQAIVADILSGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H                   + DVVV+  K 
Sbjct: 411 AGHAQAIHGRAEAVTSAIMQAKEDDVVVIAGKG 443


>gi|94984207|ref|YP_603571.1| UDP-N-acetylmuramyl-tripeptide synthetases [Deinococcus
           geothermalis DSM 11300]
 gi|94554488|gb|ABF44402.1| UDP-N-acetylmuramyl-tripeptide synthetase [Deinococcus geothermalis
           DSM 11300]
          Length = 488

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 149/480 (31%), Gaps = 53/480 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL  A+       +P   V G++  +  + P   F AI+G  +DGH F+     +G
Sbjct: 1   MRLPDLAAALS-TPTPPLPDVEVRGVTHHAAWVEPGFLFVAIRGARFDGHSFLPEVAARG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+     + +  +  +P   V +   AL   A A          ++ +TG+ GKTTT
Sbjct: 60  AVAVLGE--GLPADVASPLPYLSVPNARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117

Query: 123 KEMLTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMP----VDVDFG 163
             +    L +                        ++      P     +        +  
Sbjct: 118 SWLTRHLLRAAGLRTGLLSTVGYELPDGVLRHFPAHFTTPEAPQVQTTLRALLEAGGEAA 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   SH   +  +   V   +AV T ++  HL     +E   + K ++ E        
Sbjct: 178 VLEA-SSHALALDRV-RGVDWDVAVWTHLSSEHLDFHGTLENYFADKRKLIER------- 228

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +   A+   +  +      ++++AD+Q R  ++ +     +V         
Sbjct: 229 APFAVLNVDDPWTAQLRGVAPQETTYSAENQHADWQARHIEERATGLHFQVASPLGEFAA 288

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG     N L  +   + L A V   ++ L+ F    GR +      +     +  
Sbjct: 289 HLPMIGRFNVANALAGMAAAAQLGATVPQLVEGLASFRGVPGRMELVPGGASDPRVIVDF 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
                +          L+ +     GR   +LG     G         L EV +      
Sbjct: 349 AHTPPS------LEKALTTLRATTGGRLWVLLGSAG--GPRDPGKRAPLGEVATRLADHA 400

Query: 404 VWL--------SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V+             +  ++     +        E       F+      GD V++  K 
Sbjct: 401 VFTEEDCRDTPLWDILREMERGAREAGRNNFTSIEDRREAIRFVIREARPGDTVLLAGKG 460


>gi|311087117|gb|ADP67197.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
          Length = 498

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 145/469 (30%), Gaps = 46/469 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
            G      ++ +     +   ++ LA            II ITG+ GKTT  +++    +
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            +    A +G+  N     L            I                + +S  G I+ 
Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234
               V  +IA+ T +   HL     +E+  SAK  +F   +    I      Y   + + 
Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293
           L                K           +Q +  S          +  +    IG    
Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNV 312

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L++L  +  L   +   I       P +GR + +       F      + +A     
Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L+ I  H +     + G     G         +   ++      V ++  +   
Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + +       +           +         ++++  K 
Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470


>gi|304413638|ref|ZP_07395082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
 gi|304283729|gb|EFL92123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Candidatus Regiella insecticola LSR1]
          Length = 514

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 135/476 (28%), Gaps = 55/476 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP   ++ + +DSR +A  + F A+ G   DG  +I  A+ +GA  V+      ++   
Sbjct: 21  DVPSLPLSEMVLDSRLVAKGDVFIALVGHQTDGRHYISQAIAQGATAVIAEAQGQSAPSI 80

Query: 81  L-----------------SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
                              +P+  ++ +   L+KLA     +      ++ +TG+ GKTT
Sbjct: 81  PTQQRGGFKGEGYITTIQGVPIVYLNHLNQHLSKLAGQFYHQPGARLKLVGVTGTNGKTT 140

Query: 122 TKEMLTIALSSIKKTYACI---------------GSYNNHIGVPLTLARMPVDVDFGIFE 166
             ++L     ++    A +                +               V        
Sbjct: 141 LTQLLAQWSQALGNISAVMGTLGNGLLQQSLIATENTTGSAIDVQKTLNHFVMQGANFAA 200

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G ++     +    AV T ++  HL     +     A               +N
Sbjct: 201 MEVSSHGLVQHRVTALPFTAAVFTNLSRDHLDYHGDM-ARYEAAKWQLFSTHHAKEKIIN 259

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        +       ++     +      L           + ++      E    
Sbjct: 260 ADDQVGRRWLHQLPHAVAVSMEGKIPADWKGRWLETKNINYHAQGVTLRFDSSWGEGRLV 319

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                      + + + ++L  D       ++     +    R          T+I +  
Sbjct: 320 SRLLGAFNVSNLLMALATLLALDYPLKKL-VATVSQLQAVCGRMEVFNALDRPTVIVDYA 378

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A        L+    H +G+   V G     G         L   ++     H+ +
Sbjct: 379 HTPDA----LEKALAAARLHCKGQLWCVFG----CGGDRDKGKRALMGGIAEQWADHLVV 430

Query: 407 S---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         G  V  +   L    H             +     + DVVVV  K 
Sbjct: 431 TDDNPRTEDPGAIVADILSGLVEIRHAVVIHNRAEAINSVVMQAKEQDVVVVAGKG 486


>gi|332675170|gb|AEE71986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes 266]
          Length = 529

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 40  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 99

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 100 AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 159

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181
                     G  L  AR  V              + E       + +S           
Sbjct: 160 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 219

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 220 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 278

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 279 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 337

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 338 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 397

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 398 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 447

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 448 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 492


>gi|219682149|ref|YP_002468533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|219621882|gb|ACL30038.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)]
 gi|311085961|gb|ADP66043.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086537|gb|ADP66618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
          Length = 498

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 145/469 (30%), Gaps = 46/469 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAVAILCETKKKDK 72

Query: 78  IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
            G      ++ +     +   ++ LA            II ITG+ GKTT  +++    +
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            +    A +G+  N     L            I                + +S  G I+ 
Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234
               V  +IA+ T +   HL     +E+  SAK  +F   +    I      Y   + + 
Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293
           L                K           +Q +  S          +  +    IG    
Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGRFNV 312

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L++L  +  L   +   I       P +GR + +       F      + +A     
Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L+ I  H +     + G     G         +   ++      V ++  +   
Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + +       +           +         ++++  K 
Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470


>gi|50842240|ref|YP_055467.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289426126|ref|ZP_06427872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|50839842|gb|AAT82509.1| UDP-N-acetylmuramyl tripeptide synthase [Propionibacterium acnes
           KPA171202]
 gi|289153291|gb|EFD02006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes SK187]
 gi|313791790|gb|EFS39901.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA1]
 gi|313802123|gb|EFS43355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA2]
 gi|313813212|gb|EFS50926.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA1]
 gi|313838455|gb|EFS76169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL086PA1]
 gi|314963088|gb|EFT07188.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA1]
 gi|315077552|gb|EFT49610.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA2]
 gi|315107073|gb|EFT79049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA1]
 gi|327452860|gb|EGE99514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL092PA1]
          Length = 499

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181
                     G  L  AR  V              + E       + +S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLEGLFAAMAERGASDVVMEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|315108241|gb|EFT80217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL030PA2]
          Length = 499

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAVAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181
                     G  L  AR  V              + E       + +S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|300715303|ref|YP_003740106.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
 gi|299061139|emb|CAX58246.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia billingiae Eb661]
          Length = 471

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 130/451 (28%), Gaps = 43/451 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           DSR  A  + F AIKG   DG  FI  A+ +G   V+ + +  A  G +     +PV  +
Sbjct: 4   DSREAASGDLFVAIKGHAADGRRFIPQAIAQGVAAVIADAEGEAEDGDITEMHGVPVIYL 63

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
             +   L+ LA     +    +  I  +     T     +A                  G
Sbjct: 64  AQLSQRLSALAGRFYQQPGDKLRLIGVTGTNGKTTTTQLLAQWGQLLGETGAVMGTVGNG 123

Query: 149 VPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +   L          +                  + +S  G ++     +    A  T +
Sbjct: 124 LYGHLVPAENTTGSAVEVQQTLHSLVEQGATLAAMEISSHGLVQHRVAALPFAAAAFTNL 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL     +    +AK  +F   +    I    D+     L+    A+ +    +   
Sbjct: 184 SRDHLDYHGDMARYEAAKWLLFSEHQVGQIIVNADDEVGRRWLQKLPDAVAVTMEDNIDP 243

Query: 253 SKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             +  + Q  +       + +         E+    +G     N+L+ LG +  L   +D
Sbjct: 244 GCHGRWLQATEVDYHDNGAKIRFDSSWGEGEIESRLMGAFNVSNLLVALGTLLALGYPLD 303

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           + I   +   P  GR + +              + +A           L     H  G+ 
Sbjct: 304 SLIATGNQLQPVTGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCTGKL 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422
             V G     G         L   ++      V ++  +            +   L  + 
Sbjct: 357 WCVFG----CGGDRDKGKRPLMGAIAEQFSDVVVITDDNPRSEDPAAIVADILSGLLDAG 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                               +GD+V+V  K 
Sbjct: 413 RARVMPGRAQAVTNTVMQAQEGDIVLVAGKG 443


>gi|289426881|ref|ZP_06428607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|295130328|ref|YP_003580991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|289159970|gb|EFD08148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J165]
 gi|291375895|gb|ADD99749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Propionibacterium acnes SK137]
 gi|313772510|gb|EFS38476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL074PA1]
 gi|313807240|gb|EFS45727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA2]
 gi|313809746|gb|EFS47467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA1]
 gi|313818286|gb|EFS56000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA2]
 gi|313820048|gb|EFS57762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA1]
 gi|313823143|gb|EFS60857.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA2]
 gi|313825580|gb|EFS63294.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA1]
 gi|313827819|gb|EFS65533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL063PA2]
 gi|313830655|gb|EFS68369.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL007PA1]
 gi|313833875|gb|EFS71589.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL056PA1]
 gi|314925470|gb|EFS89301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL036PA3]
 gi|314960279|gb|EFT04381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA2]
 gi|314968077|gb|EFT12176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA1]
 gi|314973657|gb|EFT17753.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL053PA1]
 gi|314976250|gb|EFT20345.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL045PA1]
 gi|314978265|gb|EFT22359.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA2]
 gi|314983541|gb|EFT27633.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA1]
 gi|314987729|gb|EFT31820.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA2]
 gi|314990208|gb|EFT34299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA3]
 gi|315080336|gb|EFT52312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL078PA1]
 gi|315084595|gb|EFT56571.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA2]
 gi|315085931|gb|EFT57907.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA3]
 gi|315088651|gb|EFT60627.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL072PA1]
 gi|315096277|gb|EFT68253.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL038PA1]
 gi|327325913|gb|EGE67703.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327330612|gb|EGE72358.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL097PA1]
 gi|327332214|gb|EGE73951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442836|gb|EGE89490.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA2]
 gi|327446207|gb|EGE92861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA2]
 gi|327447810|gb|EGE94464.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL043PA1]
 gi|328753746|gb|EGF67362.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL020PA1]
 gi|328760590|gb|EGF74158.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 499

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 83/465 (17%), Positives = 141/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181
                     G  L  AR  V              + E       + +S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|307551929|gb|ADN44704.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia coli ABU 83972]
          Length = 490

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/468 (14%), Positives = 143/468 (30%), Gaps = 43/468 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
              +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      
Sbjct: 6   APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
           A+ G +     +PV  +  +   L+ LA            ++ +TG+ GKTTT ++L   
Sbjct: 66  ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125

Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175
              + + +       N  +G  +              E             + +S  G +
Sbjct: 126 SQLLGEPSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLV 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++   +V T ++  HL     +E   +AK  ++        I    D+     L
Sbjct: 186 QHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWL 245

Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                A+ +        + +  + +          + +         E+    +G     
Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  GR + +              + +A      
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
                L     H  G+   V G     G         L   ++        ++  +    
Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +  + +    E              + DVV+V  K 
Sbjct: 415 EPRAIINDILAGMLDAGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|67458760|ref|YP_246384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
 gi|75536783|sp|Q4UMI9|MURE_RICFE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|67004293|gb|AAY61219.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rickettsia felis URRWXCal2]
          Length = 530

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/499 (11%), Positives = 133/499 (26%), Gaps = 88/499 (17%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++   + FFAIKG + DG+DFI   + +   LV+ +         +   V 
Sbjct: 14  VKGLSINSKTVKENDIFFAIKGQNVDGNDFINEVLNQAVALVITDNK---KNTIIDDKVI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL---------------- 130
            V+DV  AL +       +    +IA+TG+ GK++    +                    
Sbjct: 71  YVEDVQVALYEAIEIFYPKKPKNLIAVTGTNGKSSVVSYIAQTYSLLGKKAASIGTIGVE 130

Query: 131 ---SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                         +  +++        +  +    +     S  G  +     ++ + A
Sbjct: 131 IFGCDNLINDVPELTTLDYLSFRKIAHNLAENNIEYLAF-EASSHGLNQARLGEIKVNTA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------------- 234
             T+ +  HL      E    AK ++F            +                    
Sbjct: 190 CFTSFSQDHLDYHHTKENYLLAKLKLFTRHLFKPAYREEFKGDTEHSTTAYILVREDAST 249

Query: 235 -------------------------------LKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                                          +            ++            + 
Sbjct: 250 GSTSKLLLEAKFGKMSTEYLLQGGLAILNSDIAEIEFVKDYLRNHNIKFITVGKKGDVQI 309

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            + +     +      +            +      L     +        K + +    
Sbjct: 310 TKINGSLKAQNINFIFNNRECSFNTSIIGSFQASNLLIAALSIHYIGFDFNKIIEILTQV 369

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +    R     N   F     + +A   ++    +V        + R   V G     G 
Sbjct: 370 KPVKGRMERIGNTNIFVDYSHTPDALEKALTELKNV-----KLRDSRLNVVFG----CGG 420

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLF 434
                   L   ++     +V ++  +            +   + ++ +   +   +   
Sbjct: 421 NRDKTKRSLMGQIAARLADNVIITDDNPRHEDPKLIRAEIISGIEKADYTEIA-NREEAI 479

Query: 435 LFIQSSLVDGDVVVV--KS 451
            +  ++L   D++++  K 
Sbjct: 480 KYGINNLKQDDILLIAGKG 498


>gi|313646532|gb|EFS10993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
          Length = 490

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 145/468 (30%), Gaps = 43/468 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
              +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      
Sbjct: 6   APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDE 65

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
           A+ G +     +PV  +  +   L+ LA            ++ +TG+ GKTTT ++L   
Sbjct: 66  ATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQW 125

Query: 130 LSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEI 175
              + + +       N  +G  +              E             + +S  G +
Sbjct: 126 SQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLV 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++   +V T ++  HL     +E   +AK  ++        I    D+     L
Sbjct: 186 QHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWL 245

Query: 236 KAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                A+ +        + +  + +  +       + +         E+  H +G     
Sbjct: 246 AKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVS 305

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   +K  +   P  GR + +              + +A      
Sbjct: 306 NLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA------ 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
                L     H  G+   V G     G         L   ++        ++  +    
Sbjct: 360 -LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTE 414

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +  + H    E              + DVV+V  K 
Sbjct: 415 EPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 462


>gi|283470230|emb|CAQ49441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 494

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKEQP---LPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYIV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|90580223|ref|ZP_01236030.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
 gi|90438525|gb|EAS63709.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio angustum S14]
          Length = 505

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 145/469 (30%), Gaps = 47/469 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + +  ++ I++DSR +     F A+ G   DG  FI  A++ GA  ++   D +A
Sbjct: 22  KLPLELTESQIDAITLDSREVTAGSLFTAVNGHTVDGRRFIDTAIKAGASAIIAEADGIA 81

Query: 77  SIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIAL 130
           + G +++     +  + D+   L+ +A          +   A+TG+ GKTT  ++L    
Sbjct: 82  NEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQW- 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGE 174
            +    Y          G+ + L          I                  + +S  G 
Sbjct: 141 -ANLVGYKAGVMGTTGNGLLVDLKPAANTTGSAIEIQQTLAQLVEQGADFAAMEVSSHGL 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     +    ++ T ++  HL     ++  A AK  +F   +    I    D      
Sbjct: 200 VQGRIRDLHFKASIFTNLSRDHLDYHGNMQNYADAKKSLFTEHQSGIAIINADDAVGASW 259

Query: 235 LKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L    +A+ +     +              +  ++   +E        +     +G   A
Sbjct: 260 LIDIPNAVAVAIDPQAVVNHTGLKLWATDVQFSTQGVTIEFDSSWGQGKFTAPLVGSFNA 319

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L+ L  +      +   ++         GR + ++             + +A     
Sbjct: 320 TNLLLALATLLATNHPMADLLEKAPKLQAVIGRMEVFQDTDKAMMVVDYAHTPDA----- 374

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L  +  H +G+   + G     G    S    +   ++      + L+  +   
Sbjct: 375 --LEKALQALRVHCDGKLWCIFG----CGGDRDSGKRPMMAEVAERLADQIILTDDNPRS 428

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   L            +       +     D+++V  K 
Sbjct: 429 EDPKDIVDDMLAGLISPESAIIIHDRETACRHALTHASYQDIILVAGKG 477


>gi|172035734|ref|YP_001802235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
 gi|171697188|gb|ACB50169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. ATCC 51142]
          Length = 511

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 151/481 (31%), Gaps = 46/481 (9%)

Query: 4   LWTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +   HDLL  +   S        +  V GIS +S S  P + F  + G   DG +F   A
Sbjct: 15  MMKLHDLLNNVPSISSLPNHPALERDVKGISTNSHSCQPGDIFIGMPGTRVDGGEFWQSA 74

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVF-GVDD--VLGALNKLAVAARLRSKATIIAITGSV 117
           ++ GA   +++                 VDD   + A    A       +  +I +TG+ 
Sbjct: 75  MEVGATAAMISPQAAEKFPPTDDHCVMIVDDLITVAAEVAAAFYHYPAQQLNMIGVTGTN 134

Query: 118 GKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV--------DVD 161
           GKTTT  ++   LS  +K             G     +        +          + +
Sbjct: 135 GKTTTTHLIEYFLSQCQKPTALIGTLYTRWPGFQQTAVHTTPFAPELQEQLAEAVSANNE 194

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+  SH      +       ++V T +   HL     +E+  +AK  +F       
Sbjct: 195 YCVMEV-SSHALAQGRVKQCP-FKVSVFTNLTQDHLDFHKDMEDYFAAKQLLFTPDYLQE 252

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD + + L         +          ADF  R            +     ++
Sbjct: 253 KAIINLDDPYGKRLIE--SLKPEQVWSYSVGDTQADFYTRDLTYRGNGVTGTLHTPLGTV 310

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G     N+L  +  V  L  D+ T I+ L  F    GR +R +    Q    +
Sbjct: 311 NFTSPLVGQFNLSNVLAAVAAVLHLGLDLTTIIETLPHFLGVPGRMERVQINDKQDITVI 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        + L    P  +G+ I V G     G         L    S    
Sbjct: 371 VDYAHTPDSLE-----NSLKAARPFIQGQLICVFG----CGGDRDRTKRPLMGQASAELA 421

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
               ++  +            +   +P ++                     GD V++  K
Sbjct: 422 DVSVVTSDNPRTEDPQRILEDILTGIPETVEPFVISDRAEAIKTAILQAKPGDGVLIAGK 481

Query: 451 S 451
            
Sbjct: 482 G 482


>gi|88704095|ref|ZP_01101810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
 gi|88701922|gb|EAQ99026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Congregibacter litoralis KT71]
          Length = 495

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 86/481 (17%), Positives = 152/481 (31%), Gaps = 45/481 (9%)

Query: 1   MNPLW--TFHDL---LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M P+   T  +L   L          +P   + G+ +DSR++ P E F A++G  +DG  
Sbjct: 1   MTPVTVNTCRELPALLMGTGADLAAGLPNIDIAGLCLDSRNVQPGELFVALRGGSHDGRA 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           ++  A   GA   +V  ++        +P   +  +   L ++A            + A+
Sbjct: 61  YLSQAAAAGAVAALVEDELPGEEPP--LPCVVIPGLRHKLCEIAGRYYRDPSRQMHVAAV 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKTT  ++    L S       IG+    +   +  +         + E+  S  G
Sbjct: 119 TGTNGKTTVSQLFAQLLRSAGYDCGVIGTLGASLTAGVQDSVHTTPDSIAMQEILASWAG 178

Query: 174 EIRFLTHLV--------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           +      +                   A+ T +   HL     +E   +AKA +F     
Sbjct: 179 QAVPFVSMEVSSHALDQGRVNGLDIDSAIFTNLTRDHLDYHGDMESYGAAKARLFAFESL 238

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              I     D  F  + A   +LG+  +       +AD +L   +  S    M ++    
Sbjct: 239 RTAILN--SDDPFSDVLAGRMSLGVAVLRYGLNDASADVRLSNLRLHSAGMQMRLESPWG 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +    +G   A N+L  L          D  + A     P  GR +    A      
Sbjct: 297 NGTLNCPLLGKFNAVNLLAALTAALQAGVPFDAVMTAAESLQPVPGRMEPIHSAAGPLVV 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +A          VL  +    +GR IAV G     G         L       
Sbjct: 357 VDYAHTPDA-------LRHVLIALREQCKGRLIAVFG----CGGDRDKGKRPLMAEAVAA 405

Query: 400 NISHVWLSGFHVLA------LKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
                 ++  +  +      + D     +   H              S    D V++  K
Sbjct: 406 IADRAVITSDNPRSEDPLAIIADIEAAMAGEYHVCADRGDAIAMAIESAAPEDCVLIAGK 465

Query: 451 S 451
            
Sbjct: 466 G 466


>gi|255030617|ref|ZP_05302568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes LO28]
          Length = 178

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L+QAI   +  +     ++ I+ DSR + P   F  I G   DGH F   AV+ G
Sbjct: 1   MKLNELMQAIPVFTGEVSETIEISHIAQDSRKVKPGTLFICIDGEVVDGHKFASRAVELG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++    +      +SIPV  V D   A+  LA            ++ ITG+ GKTT 
Sbjct: 61  AVAIIAEKQV-----DVSIPVIYVRDSKRAMAMLADYFYGSPTQALKLVGITGTNGKTTV 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG 148
             ++   +    +    IG+    IG
Sbjct: 116 SHLVEQIVRENGEQTGLIGTMYRKIG 141


>gi|313837462|gb|EFS75176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA2]
 gi|314929328|gb|EFS93159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL044PA1]
 gi|314971669|gb|EFT15767.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL037PA3]
          Length = 499

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 84/459 (18%), Positives = 143/459 (31%), Gaps = 46/459 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           + GI++DSR + P + +  ++G H  G  F   A + GA  V+ +           +PV 
Sbjct: 16  ITGITLDSRQVRPGDLYVGLQGLHAHGARFAGSAAESGAVAVLTDEHGAKLAVEAGVPVV 75

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            VDD   A+   A           T+  ITG+ GKTTT  ++   L +            
Sbjct: 76  IVDDPRAAMAVAAARIFGHPSDAMTMFGITGTNGKTTTAFLVEAGLRTAGHHVGTIGTIG 135

Query: 144 NNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHLVRPHIA 187
               G  L  AR  V              + E       + +S               + 
Sbjct: 136 FRLDGDELPSARTTVTTPESPDLQGLFAAMVERGASDVVMEVSSHALALQRVDGTCFDVV 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     +++   AKA +F   +      +N DD     L  +  A G+   
Sbjct: 196 AFTNLGRDHLDFHKTLDDYFEAKARLFT-PDLARVGVINVDDPRGRQLIERMQANGV-RA 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +    + +D+Q+  W   +  +  +V        +     G    +N  M L ++    
Sbjct: 254 VTTSIHQPSDYQVTSWHAAATGAIFDVNTPSGERTLELSLPGEFNVRNAAMALAMLETAG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D     L             R  L     T + + +   P ++ +A+     ++   
Sbjct: 314 LAFDDVADGLCSAQVPGR---MERVDLGADAPTALVD-FAHTPQAIASALDAARSLADS- 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------L 414
            GR IAVLG     G    +        ++      V ++  +                 
Sbjct: 369 -GRLIAVLGA----GGDRDAVKRGPMGQVAAERADIVVITDDNPRTEDPAVIRAAVLEGA 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            DA    I V                   GDV+ V  K 
Sbjct: 424 HDAADDGIIVVDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|157147491|ref|YP_001454810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter koseri ATCC BAA-895]
 gi|157084696|gb|ABV14374.1| hypothetical protein CKO_03290 [Citrobacter koseri ATCC BAA-895]
          Length = 495

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 148/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSEHMRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + +T        N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLAGLVEQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWTLYSTHHYGEAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  + K     + +         E+ 
Sbjct: 241 ADDEVGRRWLVRLPDAVAVSMEDHINPNCHGRWLKAVEVKYHDSGATIRFDSSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K      P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAPRLQPVCGRMEVFSAPGKTTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCTGQLWCVFG----CGGDRDKGKRPLMGAIAEEFADVV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAIMQAKENDVVLVAGKG 467


>gi|229091590|ref|ZP_04222795.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
 gi|228691739|gb|EEL45489.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus Rock3-42]
          Length = 272

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 32/225 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I   + F  + G   DG     H F+  AV
Sbjct: 17  LKELANLLMIKETIGDMNIEITGLEMDSRKITSGDLFICVSG--IDGFLEDRHQFVEDAV 74

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 75  KNGAVALIVERDI-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  ++   LS        +G+    +G                          + D+ 
Sbjct: 130 TTTSYLIEKILSDYGYHMGLMGNNGVKVGSKWYSTDINTQEPPTLQRNLQMMKNQNADYC 189

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           + E+    L   R      +  IAV T +   HL      +E   
Sbjct: 190 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFDEYKH 232


>gi|224476113|ref|YP_002633719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222420720|emb|CAL27534.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 494

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/474 (13%), Positives = 142/474 (29%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L + I+   +       +  I+ DSR+      F A KG   D H F    V +G
Sbjct: 1   MKANELFEKIKSKQVLGSLDREITDITTDSRTAEEGSVFVATKGYTVDSHKFCQDVVNQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             L+VV ++         +    V       + +          + T   +TG+ GKT+ 
Sbjct: 61  CKLIVVESEQEVE---GDVTQVIVPKTRRVASLIVHKLYNYPSEQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---- 169
             M+      +                         P T+       +            
Sbjct: 118 ATMIHQIHRKLGKGSAYLGTNGFQINETVTKGENTTPETVTLTKKIHEAVEAGAESMTLE 177

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G        V   +A+ + +   HL     +E    AK+ +F  L +         
Sbjct: 178 VSSHGLALGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLRKEKFAV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    ++++G  + A F+  + ++    +  +      +  V    +
Sbjct: 238 VNADDDFSEYLTSVTPYEVFTYGIHRPAQFKAERIQESLTGASFDFVTPDGTFHVDSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      +   +  +S   P           L     +L  +    
Sbjct: 298 GKFNISNIMAAMTAVWGTGTPMQEIVDVVSQLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++ +  S     +V  + 
Sbjct: 351 YAHTTDGIEKLIDAVKPFVKQKLIFLIG-MA--GERDLTKTPEMGKQASRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y E                 GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHDNYVEYTDRAEGIRHAIDVAEPGDTVVL-ASKG 458


>gi|225023746|ref|ZP_03712938.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
 gi|224943628|gb|EEG24837.1| hypothetical protein EIKCOROL_00610 [Eikenella corrodens ATCC
           23834]
          Length = 493

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/445 (17%), Positives = 140/445 (31%), Gaps = 35/445 (7%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-DMVASIGSLSIPVFGVDDV 91
           DSR + P + F A +G + DG ++I  A+  GA +V  ++ D  A      I   GV  +
Sbjct: 30  DSRLVQPGDVFVACQGEYADGRNYIPAAIANGAAMVFWDSGDGFAWRPEWQIANLGVPHL 89

Query: 92  LGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY---------ACI 140
                 LA           +   +TG+ GKT+  + L  A   +                
Sbjct: 90  KQNAGLLAAKLYGNFSGSLSCWGVTGTNGKTSISQWLAQAADLLDTPCAIIGTVGNGFWG 149

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGM-----SHLGEIRFLTHLVRPHIAVITTIAPA 195
                    P  +    +   F            S  G  +          A+ T +   
Sbjct: 150 RLEETTHTTPNPVRVQTLLHQFKQQGAKAVAMEVSSHGLDQNRVVGTPFSSAIFTNLTRD 209

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +    ++KA++F        I    D+   EL            +Y +G ++ 
Sbjct: 210 HLDYHGSMAAYGASKAKLFYWQSLQHAIINTDDEFGRELAAGLRADRPNLNVYGYGFNEQ 269

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           AD ++ ++    +   +       S E+    +G   AQN+   +G++      +   ++
Sbjct: 270 ADIRITRFAASDQSMQVAFDTPWGSGEIHSRLLGRFNAQNLAACVGLLCAEGYSLPDVLR 329

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+   P  GR      A            Y   P +++ A++ L +I P G      V 
Sbjct: 330 VLAQIRPATGRMDCISRAGRPLVVVD----YAHTPDALEKALATLREIKPQGASLWC-VF 384

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPR-SIHVHYSE 428
           G     G         L    ++     V ++  +         + D LP          
Sbjct: 385 G----CGGNRDRGKRPLMGSAAVQGADKVVITSDNPRMEEPQDIIADILPAVPQPALVEA 440

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                           D+V++  K 
Sbjct: 441 DRRVAIQTAIRRAAPQDIVLIAGKG 465


>gi|289551161|ref|YP_003472065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
 gi|289180693|gb|ADC87938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus lugdunensis HKU09-01]
          Length = 494

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/475 (15%), Positives = 146/475 (30%), Gaps = 42/475 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F    + +G
Sbjct: 1   MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             ++VV            +    V + L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CQIIVV---KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +                  +   +   +        + 
Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    I+++G   +A F+     +  +    E+     +  V    +
Sbjct: 238 LNNDDAFSEYLASVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V       +T ++A+    P EGR +     L          + + 
Sbjct: 298 GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 358 -------MNKLIDAVKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVACRA--DYVIFTP 405

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +            L        +V   E               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTSELAKGATHDNYVE-FEDRAEGIRHAIEVAEPGDTVVL-ASKG 458


>gi|153830359|ref|ZP_01983026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
 gi|148874166|gb|EDL72301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae 623-39]
          Length = 512

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G     
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 101

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA           I +TG+ GKTT  +++   L       ++ 
Sbjct: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQQIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 282 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 393 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 448

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 449 LTHPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 484


>gi|167614188|gb|ABZ89693.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Buchnera aphidicola]
          Length = 498

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/497 (14%), Positives = 160/497 (32%), Gaps = 60/497 (12%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+  +N + +DSR + P++ F A+KG   DGH+FI  A+ K    V+        
Sbjct: 13  WIKNLPKKNINNLVLDSRKLKPKDIFIAVKGEKKDGHNFIFEALSKKVVAVLSEVSERKQ 72

Query: 78  IGSLSIPVFGVDDVL----GALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
            G ++                L++L+     +      +I ITG+ GKTT  +++     
Sbjct: 73  HGKINYINNIPIISFFKLSKNLSRLSGRFYHQPSSQLKVIGITGTNGKTTVTQLINQWSE 132

Query: 132 ---------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
                            K       +  + I +   L  +   V     E+  S  G ++
Sbjct: 133 LLGDKIATMGTLGNGFYKSLIPTENTTASAIDIQSFLYSVLNKVKSVTIEV--SSHGLVQ 190

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFE 233
                +  + A+ T +   HL     +++   AK  +F        I      Y  ++ +
Sbjct: 191 NRVKNILFYAAIFTNLTQDHLDYHENMKKYELAKRSLFTDHTVNKIILNANDKYAQNWLK 250

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
               K          +  K           K   E++ ++ +       +  + IG    
Sbjct: 251 KFSNKYTIAVTIQDCTQKKYSTKWLNATYIKVYGEKTNVKFESSWGHGILSTYLIGTFNI 310

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L+ L  +  +   +   +K      P  GR + +     +    +    Y   P ++
Sbjct: 311 KNLLLALACMLEMNYKLSDLVKKSIQIKPIYGRMQTFNSIKTKPICIID---YAHTPDAL 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + +++ +     + + +   + G     G         L   ++    + V ++  +   
Sbjct: 368 EKSLNAIKI--QYCKKKIWCIFG----CGGERDKKKRPLMGEIAEKIANKVVITNDNPRH 421

Query: 414 ---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS----------- 451
                    +         +           ++       D++ +  K            
Sbjct: 422 EDQNKIIQEIITGCKEKEKIIIIPNRKKAITYVFFQSNIDDIIFIAGKGHENYQIIGDQY 481

Query: 452 -SNSCGFYRLINLLLEE 467
            S+S     ++  LLE+
Sbjct: 482 TSHSDQ--EIVLNLLEK 496


>gi|219681592|ref|YP_002467978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
 gi|257471278|ref|ZP_05635277.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|219624435|gb|ACL30590.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)]
          Length = 498

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 146/469 (31%), Gaps = 46/469 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I  +P+ +++ + +DSR++ P + F A+ G   DG  FI+ A+ K A  ++  T     
Sbjct: 13  WIKNIPKKYISNLKMDSRTLTPGDLFIAVPGIKKDGRHFIVQAINKKAAAILCETKKKDK 72

Query: 78  IG----SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
            G      ++ +     +   ++ LA            II ITG+ GKTT  +++    +
Sbjct: 73  HGIFKYIKNVILIYFFKLSENVSLLANRFYKEPGKRLKIIGITGTNGKTTVTQLINQWST 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRF 177
            +    A +G+  N     L            I                + +S  G I+ 
Sbjct: 133 ILGTKTATMGTLGNGFYNSLQPTNNTTSSPIFIQLFLSKVLEKQAELVTMEVSSHGLIQH 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234
               V  +IA+ T +   HL     +E+  SAK  +F   +    I      Y   + + 
Sbjct: 193 RVKEVPFYIAIFTNLTQDHLDYHENMEKYESAKWLLFSTHKVKKIILNADDQYGKIWLKK 252

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMA 293
           L                K           +Q +  S          +  +    IG+   
Sbjct: 253 LLNFYTVAVTIQNRKQKKYSTKWINATNIEQNNNNSIYITFESSWGTGRISSCLIGHFNV 312

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L++L  +  L   +   I       P +GR + +       F      + +A     
Sbjct: 313 TNLLLSLACLLELGYSLSDLIHTSEKIIPVQGRMELFSYVKKPTFIIDYAHTPDA----- 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L+ I  H +     + G     G         +   ++      V ++  +   
Sbjct: 368 --LKKTLNAIHSHYQRYIWCIFG----CGGERDQKKRPIMGAIAEKMSDKVIITNDNPRN 421

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + +       +           +         ++++  K 
Sbjct: 422 EKEKKIIQDILNGCKNKEKILIIPDRKKAISYAYFGAKYHHIILIAGKG 470


>gi|269122880|ref|YP_003305457.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314206|gb|ACZ00580.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptobacillus
           moniliformis DSM 12112]
          Length = 476

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/470 (16%), Positives = 158/470 (33%), Gaps = 44/470 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            +   L + +    + +V +     +S +S+ I   + F A+ G   DGH++I  A++ G
Sbjct: 1   MSIQKLFKNVDYRVLTLVEEDNFKDMSYNSKEIKEGDIFVALIGNVADGHNYIPSAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
           A +++   D         I V  V ++   L  ++       ++K  IIA+TG+ GKTTT
Sbjct: 61  AKMIIAERDDYPY--PKDITVVLVKNLRDNLGYISSNFYNFPQNKLKIIAVTGTNGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGS-----YNNHIGVPL--TLARMPVDVDFGIFE---LGMSHL 172
             +L     +  +            Y      P    L ++  +      E   + +S  
Sbjct: 119 TYILESIFKNSARIGTTGYRILDVEYEAKNTTPESLDLIKLMKEAVDKNVEYFLMEVSSH 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
              +    ++    A+ T +   HL     +E+   AKA I   L+    + +N DD + 
Sbjct: 179 ALCQGRVKMLEFDSAIFTNLTQDHLDFHETLEKYFEAKASIINHLKPNARLIINKDDKYC 238

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L             SF   + A       +   +   + +    K        +G + 
Sbjct: 239 NRLLN--------VSDSFSLKEVATINGEVLEYTLKGMKVRISKDDKKYIFTTKLMGEYN 290

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN+L  +     L  D+D  I ++   +   GR       ++     ++   Y      
Sbjct: 291 LQNLLGAILSAYNLGIDLDEIINSIQNINSIAGRF----EIIDNDKDVMVVVDYAHTADG 346

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++  +  LS +  +        L  +   G              +      ++L+  +  
Sbjct: 347 LENILKTLSIMKKNR-------LVTLFGAGGDRDKTKRAKMAQAACKYSDLIFLTSDNPR 399

Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++  +  SI        +        +L   D++++  K 
Sbjct: 400 TEDPEMILNDVEKGMNSSIPYFKICDREMAIKNSIQTLQKNDILLIAGKG 449


>gi|150020558|ref|YP_001305912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
 gi|149793079|gb|ABR30527.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermosipho
           melanesiensis BI429]
          Length = 491

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/477 (15%), Positives = 153/477 (32%), Gaps = 50/477 (10%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L+A+      +        + IS +S+ I     F   KG ++D H  +    +
Sbjct: 1   MKIKEILKALNSVILKVNCDENMEFDYISSNSKDIKENTLFICRKGFNFDSHKIVDDVAR 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKT 120
            GA         +        P   V D   A + +A     +    +I   +TG+ GKT
Sbjct: 61  NGAE------IFIVEEEIEDYPYILVVDSRIAESIIADVFFQKPYEKLITFGVTGTNGKT 114

Query: 121 TTKEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------ 166
           T+  +    +                 +G    H     +   +  ++   + E      
Sbjct: 115 TSVHLFHHIMHQFGIKGSISGTVLNDIMGDKFYHHNTTPSAIEITKNMFKTVIEDGKYYA 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     ++    +R  I  IT I   HL      E    AK  I   L+  G   +N
Sbjct: 175 MEVSSHALSQYRVESIRYDIVGITNITRDHLDFHQTFENYKRAKLHILNLLKPNGIAIVN 234

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           ++                  + +FG   N+D+ + +        + +++      +VV  
Sbjct: 235 HELIH-------DIPKKNIRVVTFGTDNNSDYVIHEIISNWSGIFFKLKTPFGEKKVVSQ 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+ + +  +  +  D+D  I A+S F   +GR +    A   G   +ID ++
Sbjct: 288 LLGDFNAFNVTLVIAALVEIGYDIDDVISAISTFRGVDGRLEIISEAKKLGIEIVIDFAH 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +          +  I    +GR I V G     G  S      +   ++        +
Sbjct: 348 TPDALE-----KAILSIRKLTKGRIITVFGA----GGQSDVGKRPMMGEIASKYSDICII 398

Query: 407 S-----GFHVLALKDALPRSIHVHYSE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +     G   + +   +   +                    +    GD++++     
Sbjct: 399 TTDDPRGEDPVKIIKDIEEGVVSGSLSLSIIDRREAIDTAITLANRGDIILIAG-RG 454


>gi|89074175|ref|ZP_01160674.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
 gi|89050111|gb|EAR55637.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium sp. SKA34]
          Length = 505

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 149/469 (31%), Gaps = 47/469 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + +  ++ I++DSR +     F A+ G   DG  +I  A++ GA  ++   D +A
Sbjct: 22  KLPLELTEIQIDAITLDSREVISGSLFTAVNGHTVDGRRYIETAIKAGASAIIAEADGIA 81

Query: 77  SIGSLSIP----VFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIAL 130
           + G +++     +  + D+   L+ +A            + A+TG+ GKTT  ++L    
Sbjct: 82  NEGDIALKDGVYIIYLQDLNHKLSAIAGRFFDHPDQKLALYAVTGTNGKTTISQLLAQWA 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGE 174
           +        +G+  N  G+   L          I                  + +S  G 
Sbjct: 142 NLAGYKAGVMGTTGN--GLLTDLKPAANTTGSAIEIQQTLSQLVEQGADFTAMEVSSHGL 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     +    ++ T ++  HL     ++  A+AK  +F   +    I    D      
Sbjct: 200 VQGRIRDIHFKASIFTNLSRDHLDYHGCMQNYANAKKSLFTEHQSRMAIINADDAVGASW 259

Query: 235 LKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           LK   +A+ +     +              +  ++   +E        +     +G   A
Sbjct: 260 LKDIPNAVAVAIDPQAVANHAGLKLWATDVRFSTQGVTIEFDSSWGLGKFTAPLVGSFNA 319

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L+ L  +      +   ++         GR + ++             + +A     
Sbjct: 320 TNLLLALATLLATNHSMADLLEKAPQLQAVIGRMEVFQDTDKAMMVVDYAHTPDA----- 374

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L  +  H +G+   + G     G    +    +   ++      + L+  +   
Sbjct: 375 --LEKALQALRVHCDGKLWCIFG----CGGDRDNGKRPMMAEIAERLSDCIILTDDNPRS 428

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   L            +       +     D+++V  K 
Sbjct: 429 EDPNGIVDDMLTGLISPESATIIHDRETACRHALTHASRQDIILVAGKG 477


>gi|156935395|ref|YP_001439311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156533649|gb|ABU78475.1| hypothetical protein ESA_03253 [Cronobacter sakazakii ATCC BAA-894]
          Length = 471

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   +V      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIVAEAKGEATDGEVREIHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            +I +TG+ GKTTT +++      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYDEPSERLRLIGVTGTNGKTTTTQLIAQWCQRLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                         +  + +S  G ++     ++    V T
Sbjct: 122 NGLLGKVMPTENTTGSAVDVQHVLSGLAAQGATVAAMEVSSHGLVQHRVAALKFAATVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +F        +    D+     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLFSAHHYGQAVINADDEVGRRWLAKLPDAVAVSMENNI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +  + +    +     + +         E+    +G     N+L+ LG +  L   
Sbjct: 242 NPGCHGRWLRADAVEYHDRGATLRFSSSWGDGEIESRLMGAFNVSNLLLALGTLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +++     P  GR + +              + +A           L     H  G
Sbjct: 302 LAALLESAPRLQPVNGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEDPKAIIADILTGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +      E              + DVV++  K 
Sbjct: 411 AGRARVVEGRAEAVTNAIMQAAENDVVLLAGKG 443


>gi|331091589|ref|ZP_08340425.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403616|gb|EGG83172.1| hypothetical protein HMPREF9477_01068 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 494

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 163/477 (34%), Gaps = 49/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ I+   +    +  +  ++ DSR +     F  IKG   DG  ++  AV+KG
Sbjct: 1   MKLTNLLRPIKYSILQGESEPDIEKVTHDSREVERDTLFVCIKGSATDGALYVGEAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  ++ +  +        +    V++V   L K+A           T+I ITG+ GKTTT
Sbjct: 61  AVAILADRRIEV---PREVTFILVENVRETLAKIASVFYGEPSKEMTVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         IG+    IG                       +    D  + E
Sbjct: 118 AYMIYHILEQSGYKVGLIGTIEIRIGEKRIPAKNTSPESVNIQRFLKEMVLQKCDIAVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G     T  ++  I V T +   H+  F   +       +     +    I   
Sbjct: 178 V--SSQGLKLHRTDEIQFDIGVFTNLGKDHIGKFEHKDFEEYKNCKAKLFSQSDFGIANM 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               + E+    +  +      + G SK AD+         +   + ++ +    +    
Sbjct: 236 DSPYWREMFLRANCDV-----ETVGFSKEADYYASDEVVTRKSGRLGIRYRLNGKDRGDI 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+  +L  +++      +           + +G+  + + N+G   LID ++
Sbjct: 291 VLSMAGRFNIYNSLCAIAVCRRLGVSFENIRQSLCKTQVKGRVEQISTNKGTIILIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA   S+++ + ++    PH       ++      G  ++    ++ +V        +  
Sbjct: 351 NA--MSLQSILEMVHSYRPHR------IICIFGCGGNRAKERRYEMGKVSGALADFTIIT 402

Query: 407 SG--------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S           +  +++ +    + +Y E    +    +        D++V+  K 
Sbjct: 403 SDNPRYENPLQIMSEIREGVEDG-NGNYLEICNREEAIRYGIKYAGAADIIVIAGKG 458


>gi|317132989|ref|YP_004092303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470968|gb|ADU27572.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ethanoligenens
           harbinense YUAN-3]
          Length = 484

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 86/476 (18%), Positives = 145/476 (30%), Gaps = 54/476 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL+ +     G +P+  + GI+ DSR   P   F  I G   DGHDF   A   G
Sbjct: 1   MKLQNLLRDVSYTG-GALPEFEITGITADSRKAGPGVVFVCIPGERADGHDFAASAAAAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           +  V+   D  A      +P   V D   A          R   +  ++ +TG+ GKTTT
Sbjct: 60  SPAVLALRDTGAP-----VPHILVKDTRLAYALCCANFFGRPAERLRMVGVTGTNGKTTT 114

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARM-----PVDVDFGIFE 166
             +L   L         IG+  N  G            P    ++         +F + E
Sbjct: 115 TTLLKEILEYNGHKSGLIGTIVNMAGGKTLPSHLTTPEPYEFQQLLKTIADEGCEFAVME 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  SH      +        AV T +   HL     +E    AK ++F   +       +
Sbjct: 175 V-SSHALAQERVAGCH-FEAAVFTNLTQDHLDFHKTMENYLEAKEKLFSMCDLGIVNVDD 232

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                             KT+    +  NAD+  R  K  ++    E+        V   
Sbjct: 233 DYAP------EIIRTAKCKTVTYSARYMNADYTARNIKLKNDGVEYEMVGNALIGRVSVP 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L        L       ++AL      +GR            FT+I +  
Sbjct: 287 IPGAFSVYNTLAAAAAAVSLGIPFKQVLEALHQVKGVKGR---IEVVPTGRNFTVIIDYA 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A       +L  I    +GR +A+ G     G         +  +++        +
Sbjct: 344 HTPDA----LEKILKSIRGFAKGRVVALFG----CGGDRDKTKRPIMGMVAGRGADFCIV 395

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +   +                 +   +    D+V++  K 
Sbjct: 396 TSDNPRTEDPQAIIDDILPGMDGPAPYVVVPNRREAIAYALKNAQKDDIVLLAGKG 451


>gi|255588801|ref|XP_002534724.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223524690|gb|EEF27660.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 850

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 145/438 (33%), Gaps = 36/438 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V+GI+ DSR +     F A  G H DG D+I  A+ KGA  V+ ++          + 
Sbjct: 384 APVHGITADSRQVEKHGLFLAYPGQHSDGRDYIEDAIAKGANTVIWDSQGFDWKPEWQVH 443

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-- 140
              + D+   +  +A         +   + +TG+ GKTT    L  A   +++  A I  
Sbjct: 444 NIAIADLKSQVGHIASQFYKDPSEQMWCVGVTGTNGKTTVTHWLAQAYRFLQQKSAVIGT 503

Query: 141 ---------GSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                     +  N    P+ L +M       D  +  + +S  G  +   + V   +AV
Sbjct: 504 LGNGALEDLQATQNTTPGPVELQKMLATFVLDDVRMVAMEVSSHGLDQGRVNGVAFDVAV 563

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   HL     +E    A        +      +N DD F   L       G   + 
Sbjct: 564 LTNITRDHLDYHLTMEAY-QAAKRKLFDWQTLSAAVVNADDPFGLALIEDLRKQGK-KVL 621

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S+G    AD         +    ++V+    + ++  H +G     N L  L  + +   
Sbjct: 622 SYGLHAQADVCATAVTMHATGFEIQVRTAQGTGDIQLHALGQFNVYNALAVLTCLLVNEV 681

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +  A++A+S   P  GR +            ++D ++  +          L  +     
Sbjct: 682 ALPAALQAVSGLVPVAGRMQM--FGGGDLPLVVVDYAHTPDALE-----KALHTLRSQAR 734

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI- 422
           G+   V G     G    S        ++      V ++  +       A+  A+   + 
Sbjct: 735 GKLACVFG----CGGDRDSGKRSEMGRIADELADSVIITNDNPRSENPYAIIAAIAEGMA 790

Query: 423 -HVHYSETMDGLFLFIQS 439
                            S
Sbjct: 791 REATVETDRAKAIALAVS 808


>gi|57650209|ref|YP_185889.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87161291|ref|YP_493619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194711|ref|YP_499507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|151221100|ref|YP_001331922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161509216|ref|YP_001574875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140106|ref|ZP_03564599.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452032|ref|ZP_05700048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|282923696|ref|ZP_06331375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|284023944|ref|ZP_06378342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848002|ref|ZP_06788749.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|304381427|ref|ZP_07364079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|61252150|sp|O86491|MURE_STAAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122539862|sp|Q2FZP6|MURE_STAA8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123486511|sp|Q2FI59|MURE_STAA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|57284395|gb|AAW36489.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus COL]
 gi|87127265|gb|ABD21779.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87202269|gb|ABD30079.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150373900|dbj|BAF67160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368025|gb|ABX28996.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257860247|gb|EEV83079.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus A5948]
 gi|269940516|emb|CBI48894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282593082|gb|EFB98082.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A9765]
 gi|294824802|gb|EFG41224.1| hypothetical protein SKAG_00059 [Staphylococcus aureus A9754]
 gi|302750843|gb|ADL65020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340102|gb|EFM06044.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315197527|gb|EFU27863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141165|gb|EFW33012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143222|gb|EFW35012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313687|gb|AEB88100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329731151|gb|EGG67522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 493

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|15924008|ref|NP_371542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926606|ref|NP_374139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|148267450|ref|YP_001246393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393503|ref|YP_001316178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|156979343|ref|YP_001441602.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253731624|ref|ZP_04865789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|255005806|ref|ZP_05144407.2| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795249|ref|ZP_05644228.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|258406898|ref|ZP_05680051.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|258421866|ref|ZP_05684787.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|258435264|ref|ZP_05689003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|258441476|ref|ZP_05690836.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|258446956|ref|ZP_05695109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|258449934|ref|ZP_05698032.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|258455030|ref|ZP_05702993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|269202632|ref|YP_003281901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894043|ref|ZP_06302274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|282927239|ref|ZP_06334861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|295405821|ref|ZP_06815630.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|296275582|ref|ZP_06858089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245412|ref|ZP_06929283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|54037861|sp|P65480|MURE_STAAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041510|sp|P65479|MURE_STAAM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224784|sp|A7X0P6|MURE_STAA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13700821|dbj|BAB42117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus N315]
 gi|14246788|dbj|BAB57180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740519|gb|ABQ48817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149945955|gb|ABR51891.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721478|dbj|BAF77895.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|253724623|gb|EES93352.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|257789221|gb|EEV27561.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9781]
 gi|257841437|gb|EEV65878.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9763]
 gi|257842199|gb|EEV66627.1| UDP-N-acetylMuramyl-tripeptide synthetase [Staphylococcus aureus
           A9719]
 gi|257848925|gb|EEV72908.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A9299]
 gi|257852266|gb|EEV76192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A8115]
 gi|257854288|gb|EEV77238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6300]
 gi|257856854|gb|EEV79757.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A6224]
 gi|257862910|gb|EEV85675.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           A5937]
 gi|262074922|gb|ACY10895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ED98]
 gi|282590928|gb|EFB96003.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus A10102]
 gi|282763529|gb|EFC03658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8117]
 gi|285816696|gb|ADC37183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus 04-02981]
 gi|294969256|gb|EFG45276.1| hypothetical protein SMAG_00978 [Staphylococcus aureus A8819]
 gi|297177715|gb|EFH36965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus A8796]
 gi|312829414|emb|CBX34256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130403|gb|EFT86390.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|329728156|gb|EGG64595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729077|gb|EGG65489.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 494

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|229521237|ref|ZP_04410657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
 gi|229341769|gb|EEO06771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio cholerae TM 11079-80]
          Length = 499

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/456 (16%), Positives = 145/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI +A+ +GA +V+   D     G     
Sbjct: 29  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDNAIAQGANVVLAEADAQHLNGWVEYR 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 89  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 148

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 149 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 208

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 209 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 268

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 269 VAKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 326

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 327 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 379

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 380 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 435

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 436 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 471


>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa]
 gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 170/499 (34%), Gaps = 65/499 (13%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            +  +LL   + +    +G + +  + GI  DSR ++  + F    G   DGH ++  A 
Sbjct: 244 MSLAELLDESKVVPVSVLGDL-EVEITGIQDDSRVVSAGDLFVCRVGMKTDGHLYLSEAD 302

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119
           ++GA  VV + ++          +  V+D    L  LA A          +I ITG+ GK
Sbjct: 303 KRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAFYKFPSKNMAVIGITGTNGK 362

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163
           TTT  ++     ++      + +   +I                 V   +A+M  +    
Sbjct: 363 TTTANLVKGMYEAMGLRTGMLSTVAYYIHGDNKLEAPNTIPGAILVQNLMAKMLHNGTEA 422

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +  +  +  G        V   IAV T +   HL      EE  +AKA++F  +      
Sbjct: 423 VV-MEATSQGLALGRCDEVDFDIAVFTNLTRDHLDFHGTEEEYKNAKAKLFARMVDPERH 481

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSF-GKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               +          +       + +F  ++KNAD    K++    ++ + V      +E
Sbjct: 482 RKVVNVDDPNAPFFIAQGNQEVPVVTFAMENKNADVHPLKYELSLFETQVLVNTPHGILE 541

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G H   N+L  + +   + A ++  ++ +       GR +       Q F  ++
Sbjct: 542 ISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELID--EEQAFGVIV 599

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +  S      +L  +      R I V+G     G         +   ++     
Sbjct: 600 DYAHTPDALS-----RLLDSVRELRPKRIITVIG----CGGERDRGKRPIMTKIATDKSD 650

Query: 403 HVWLS-----GFHVLALKDA-----------------------LPRSIHVHYSETMDGLF 434
              L+     G   L + D                        LP    +   +      
Sbjct: 651 MTILTSDNPRGEDPLDILDDMLAGVGWSMQEYLKHGENDYYPPLPNGHRLFLHDIRRVAV 710

Query: 435 LFIQSSLVDGDVVVV--KS 451
               +   +GD+VVV  K 
Sbjct: 711 RCAVAMGEEGDMVVVAGKG 729


>gi|314958369|gb|EFT02472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL002PA1]
          Length = 499

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 140/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFELGM-------SHLGEIRFLTHL 181
                     G  L  AR  V              + E G        S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|3256223|emb|CAA74740.1| UDP-N-acetylmuramyl-tripeptide synthetase [Staphylococcus aureus
           subsp. aureus COL]
          Length = 492

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 150/468 (32%), Gaps = 40/468 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G  LVVV
Sbjct: 6   LKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQGCKLVVV 65

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTI 128
           N +        ++    V D L   + LA          ++   +TG+ GKT+   M+ +
Sbjct: 66  NKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSIATMIHL 122

Query: 129 ALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGE 174
               ++K         +    +             +   +   +        L +S  G 
Sbjct: 123 IQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLEVSSHGL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +      V   +A+ + +   HL     +E    AK+ +F  L +  +       +  + 
Sbjct: 183 VLGRLRSVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDS 242

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                  +    ++S+G  + A F  +  ++  +    +      +  V    +G     
Sbjct: 243 FSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYVGKFNIS 302

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N++  +  V      ++T IKA+    P EGR       L+      +   Y      M 
Sbjct: 303 NIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAHTADGMN 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
             I  +           +  L  M   GE   +   ++  V       +V  +  +    
Sbjct: 359 KLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTPDNPAND 410

Query: 414 -----LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                  +    + H +Y   +               GD VV+ +S  
Sbjct: 411 DPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 457


>gi|313764740|gb|EFS36104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL013PA1]
 gi|313815805|gb|EFS53519.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA1]
 gi|314915231|gb|EFS79062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL005PA4]
 gi|314918540|gb|EFS82371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA1]
 gi|314919803|gb|EFS83634.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA3]
 gi|314931818|gb|EFS95649.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL067PA1]
 gi|314955974|gb|EFT00372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL027PA1]
 gi|315098260|gb|EFT70236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL059PA2]
 gi|315101049|gb|EFT73025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL046PA1]
 gi|327451058|gb|EGE97712.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA3]
 gi|327453587|gb|EGF00242.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL083PA2]
 gi|328753091|gb|EGF66707.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL087PA1]
 gi|328759164|gb|EGF72780.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL025PA2]
          Length = 499

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 140/465 (30%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGATLAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A     R     T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAMAVAAAKIFGRPSDAMTMFGITGTNGKTTTAFLVEAGLRAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFELGM-------SHLGEIRFLTHL 181
                     G  L  AR  V              + E G        S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPESPDLQGLFAAMAERGASDVVIEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W+     +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWQAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|302036127|ref|YP_003796449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
 gi|300604191|emb|CBK40523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate
           ligase [Candidatus Nitrospira defluvii]
          Length = 502

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 148/486 (30%), Gaps = 54/486 (11%)

Query: 5   WTFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            T  +L+  + G           +  +  ++ DSR + P   F A++G   DGH F    
Sbjct: 1   MTLDELIGPLHGRLGVLERNGDQRVTIADLTDDSRKVGPGSLFVAVQGERVDGHQF---- 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
           + +          +  S    +IP   V D   AL  L         S   ++ +TG+ G
Sbjct: 57  LDRVVAAGAAAVVVQRSGDVGAIPCVRVQDSRAALGILGSRFYGDPSSSLRMVGVTGTNG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGI 164
           KTTT  ++   L + ++    IG+    +G                  L     +     
Sbjct: 117 KTTTTYVVKTMLEAARRQVGLIGTVAYLVGKESIPASHTTPGALELQKLFARMREARLDT 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222
             + +S        T      +AV T +   HL     +E    A  K     G      
Sbjct: 177 VVMEVSSHALALDRTAGSEFDVAVFTNLTQDHLDFHLDMERYFQAKLKLFAELGRAGAVK 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   A+  +     ++++G  + AD      +     +   ++    +  
Sbjct: 237 PRKRAIINADDPWGARIRSACTVPVWTYGLHQQADIYADGVRLSPAGTSFTLRSPAGTCP 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G H   N+L  +G+V      +D    A+       GR +      +       
Sbjct: 297 IKSRLVGEHNVSNLLAAIGVVLHEGLTLDQVRSAVETVTNVPGRFELVEAGQDFSVVVDY 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A        + +L+       GR I V G     G              ++    
Sbjct: 357 AHTEDA-------LVRLLTAAQALRTGRIITVFG----CGGDRDRTKRPKMGRAAVKYSD 405

Query: 403 HVWLSGFHVLA-------------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVV 447
            V L+  +                +K+AL    HV Y                   GD+V
Sbjct: 406 VVILTSDNPRTEDPAAILREVEVGVKEALAERGHVRYRMVADRREAIEAAIREAKPGDMV 465

Query: 448 VV--KS 451
           ++  K 
Sbjct: 466 LIAGKG 471


>gi|293500831|ref|ZP_06666682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291095836|gb|EFE26097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus 58-424]
          Length = 494

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +      S ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F     ++  +    +      + +V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P           L     +L  +    
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPV-------EGRLEVLDPSLPIDLIID 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 351 YAHTADGMNELIDAVQPFVKQKLIFLVG-MA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|167622390|ref|YP_001672684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella halifaxensis HAW-EB4]
 gi|167352412|gb|ABZ75025.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella halifaxensis
           HAW-EB4]
          Length = 488

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 150/473 (31%), Gaps = 45/473 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L++ +             + +++DSR++     F AI G   DG  FI  A ++GA  V+
Sbjct: 2   LIRDLLAPWFHYSGAEEFSELTLDSRAVQSGSLFVAIPGYQVDGRKFITAAFERGASAVL 61

Query: 70  VNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           V+TD     G       L I  F ++  + AL   A     + +  II +TG+ GKT+  
Sbjct: 62  VHTDSPEEHGKLVHEAGLQILFFQLNRQISALAAQAYP-LSQVRPQIIGVTGTNGKTSVT 120

Query: 124 EMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGM 169
           +++        K+T       N   G  +       D    I               + +
Sbjct: 121 QLIAQLQLLQGKQTAVMGTLGNGLWGELVDSGNTTADPITLIKQLQNFEQRGADTCAMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G ++     V   +AV T ++  HL     ++   +AK  +F+       +    D 
Sbjct: 181 SSHGLVQGRVEAVPFDVAVFTNLSRDHLDYHHTMDAYGAAKKRLFQFATLRAGLINCDDA 240

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              E L     A      +S      A    +            +       ++    +G
Sbjct: 241 LGREWLTD--LASDKVIGFSIKGDSKAAIYCKDCHFHDGGVSCTLVWPTGEAKLNSPLLG 298

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L  LG + +L  D+   +       P  GR +R+              + +A 
Sbjct: 299 DFNLSNLLAALGALYLLGEDMHALVALAEKLEPVAGRMERFTTKDEVTLVVDYAHTPDA- 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                     L  +  H +G+   V G     G         +    +      V ++  
Sbjct: 358 ------IEQALKALRVHCKGKLWCVFG----CGGDRDRGKRPMMAASAEQFADRVMVTSD 407

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +            +   L    +             + +  V GD+V++  K 
Sbjct: 408 NSRSEDPNAIIADILAGLQHPKNALTQVDRQTAIKDVVAQAVAGDMVLLAGKG 460


>gi|253316178|ref|ZP_04839391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
          Length = 494

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +         
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLLKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|282916269|ref|ZP_06324031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770084|ref|ZP_06342976.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319709|gb|EFB50057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460231|gb|EFC07321.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus H19]
 gi|298694256|gb|ADI97478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302332628|gb|ADL22821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 494

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|73663076|ref|YP_301857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72495591|dbj|BAE18912.1| UDP-N-acetylmuramyl tripeptide synthase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 495

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/475 (14%), Positives = 150/475 (31%), Gaps = 40/475 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + L + I+   +    +  +  I+ DSR+      F A KG   D H F    V +
Sbjct: 1   MLDANVLFEKIRVKQVIGTLEKNITDITTDSRTAQHGSVFVASKGYTVDSHKFCQDVVNQ 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTT 121
           G  +++V+        +  +    V D L   + LA          +I   +TG+ GKT+
Sbjct: 61  GCQVIIVSHQ---QEITGDVTQVIVPDTLRVASLLANTLYNYPSKQLITYGVTGTNGKTS 117

Query: 122 TKEMLTIALSSI--------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167
              M+      +           +      +           +   ++  + +      L
Sbjct: 118 IATMIHHIYRKLGKGSAYLGTNGFQINEDKSKGANTTPETVSLTKKINEAVEKNAEAMTL 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +     
Sbjct: 178 EVSSHGLSLGRLRGVDFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSQEKFV 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  +       ++    ++++G + +A F      +  +      +      +V    
Sbjct: 238 VLNKDDAFSEYLASVTPFEVFTYGVTNDAQFTAHHINESLQGVQFTFKTPEGEFQVKSPY 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N++  +  V      ++  + A+    P EGR       L+      +   Y 
Sbjct: 298 VGLFNVSNIMAAMIAVWSKGIALNDIVDAVENLEPVEGRL----EVLDPSLPIDLIIDYA 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                M   I  +   +       +  L  M   GE   +   ++  V       +V  +
Sbjct: 354 HTADGMDKLIDAVKPFAKQK----LIFLCGMA--GERDLTKTPEMGRVACRA--DYVIFT 405

Query: 408 GFHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +          ++    + H +Y   E          +    GD VV+ +S  
Sbjct: 406 PDNPANDAPKTLTQELAKGATHDNYIEFEDRAEGIRHAINIAEPGDTVVL-ASKG 459


>gi|311693450|gb|ADP96323.1| UDP-N-acetylmuramyl-tripeptide synthetase [marine bacterium HP15]
          Length = 485

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 148/458 (32%), Gaps = 45/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+  DSR +A  +AF A+ G       ++  A+  GA ++++             
Sbjct: 12  DVTIHGLKTDSREVASGDAFIALSGARTPADFYVDKAIAAGATVILLEAQQAGECTEHHG 71

Query: 84  PVFG-VDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            +   V  +   + ++A            +I +TG+ GKT+  + +   L        C 
Sbjct: 72  ALIVPVAGLRSLVGRIADRFFEHPSQRLRLIGVTGTNGKTSVCQYVAQLLKE--TGTPCG 129

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRP 184
                  G+P  L          +                  + +S     +     +  
Sbjct: 130 ILGTLGYGMPGALQPATHTTPDAVQVNRVLSRIVKQEGRAAVMEVSSHALDQGRVDNLSM 189

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             AV T +   HL     +E   +AKA++F+  E   ++    DD F   L  +      
Sbjct: 190 TGAVFTNLTRDHLDYHGSMEAYGAAKAQLFQREELHFSVINF-DDPFGRQLFEQLDGKCD 248

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +  YS  +    +  LR+++   E    EV  +     V    +G   A N+L  +  V 
Sbjct: 249 RVRYSLHE-AQTELWLREFRPTDEGFEAEVDGEWGRFVVSVPLMGSFNASNVLAAMATVL 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++   +A+    P  GR    R     G   ++D ++  +  +     + L+ + 
Sbjct: 308 TLGVPIERVQQAVGRLTPPPGR--LERFVGANGVRVVVDYAHTPDALA-----NALTALR 360

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415
           PH  G  + V G     G    +         +      V ++  +            + 
Sbjct: 361 PHVTGELVCVFG----CGGDRDAGKRPEMAREAERLADRVVVTDDNPRSEDPETIAEHIL 416

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  V               S    DVV++  K 
Sbjct: 417 AGFTDAARVSVIHDRAEAIRSTIRSATPNDVVLIAGKG 454


>gi|82750630|ref|YP_416371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus RF122]
 gi|123548894|sp|Q2YWY9|MURE_STAAB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|82656161|emb|CAI80572.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus RF122]
          Length = 494

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F     ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|323440828|gb|EGA98536.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O11]
 gi|323443883|gb|EGB01495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus O46]
          Length = 494

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 149/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLTTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|257467034|ref|ZP_05631345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 479

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 147/469 (31%), Gaps = 47/469 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 2   EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           ++V+ ++        I    + ++   L  LA       +    I+ +TG+ GKTTT  +
Sbjct: 62  IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 118

Query: 126 LTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLG 173
           L   L   K        Y                  +   +     E      + +S   
Sbjct: 119 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 178

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 +++    A+ T +   HL     +E+   AK ++F  L       LN DD + +
Sbjct: 179 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGK 238

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L+ + H +   T             ++      E     V+L     +           
Sbjct: 239 RLQEEFHGISYGTKQ---------AGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 289

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +   I  +    +        V   +   G+       Q +  +ID ++  +    
Sbjct: 290 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALE- 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
               ++L  I      + I + G     G         +   ++      V L+  +   
Sbjct: 349 ----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 400

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +K    +  H+   E               GD+V++  K 
Sbjct: 401 ENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 448


>gi|219670078|ref|YP_002460513.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
 gi|219540338|gb|ACL22077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfitobacterium
           hafniense DCB-2]
          Length = 495

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/471 (16%), Positives = 150/471 (31%), Gaps = 42/471 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++   I+  +        + G+ +DSR + P + +  + G + DGHDF   A+ +GA 
Sbjct: 10  LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 69

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            ++V       I  L IP   V  V   +  LA        A   ++ +TG+ GKTT   
Sbjct: 70  ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 124

Query: 125 MLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV-------DFGIFE------LGMS 170
           ++    +   K    IG+    I G  L   R   +           + E      + +S
Sbjct: 125 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 184

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +            + + +   HL     +EE   AKA++F GL       +   + 
Sbjct: 185 SHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNG 244

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +          +     +   D++       ++     V+ +G++ +V +   G 
Sbjct: 245 DDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGEAEQVEYSTPGM 304

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L                 +AL+      GR +  R             + +   
Sbjct: 305 FSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDG-- 362

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +V        +GR I V G     G             ++     HV ++  +
Sbjct: 363 -----LENVCRTAQEFTQGRLITVFG----CGGDRDKGKRPQMGAIAEELSDHVIVTSDN 413

Query: 411 VL------ALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                    ++D L     + Y+  ++             +GD V++  K 
Sbjct: 414 PRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 464


>gi|332095376|gb|EGJ00399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 495

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 146/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEID 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V       G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFS----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|309812964|ref|ZP_07706692.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
 gi|308433036|gb|EFP56940.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Dermacoccus sp. Ellin185]
          Length = 501

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 94/484 (19%), Positives = 157/484 (32%), Gaps = 55/484 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +L + +       V    ++ ++ DSR+  P  AF AI G   DG  F+  A+  GA L
Sbjct: 6   AELEKILGASVPESVDG--IDAVTHDSRAAKPGGAFVAIPGFTVDGVTFVPQALANGASL 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           VV   D+         P   V D     A    A A       T+  ITG+ GKTT+  +
Sbjct: 64  VVAERDVE------GAPTVVVPDARVALAALATATAGHPSHDVTVYGITGTNGKTTSSYV 117

Query: 126 LTIALSSIKKTYACIGSYNNHIGV--------------PLTLARMPVDVDFGIFE--LGM 169
           L   LS+              I V              P     +    D G+    L  
Sbjct: 118 LHGILSAAYGEEKTGLLTTAEIVVGREREPAVRTTGEAPQVQGNLARMRDAGVEHVVLET 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G         R   A+ T +   HL     +E+    K  +FE       +    D 
Sbjct: 178 SSHGIHLHRVAGTRYAAALFTNLTRDHLDLHGTMEDYFLTKRRLFE-WTDGPKLTNVDDA 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS--------- 280
               ++      LG      FG S+NAD+++ K       +   +    +          
Sbjct: 237 YGARIVAEVPGTLG------FGVSENADYRITKVHPSDGGTAFTLTTPERFLDGRDAPGV 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+    +G +   N+     I   +   +DT + A++      GR +R   A  +GF  
Sbjct: 291 IELQMPLLGDYNVHNVAGASAIALEMGMPLDTLVGAVAHMAQVPGRFERVPAATAKGFEV 350

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIA----VLGDMCEMGELSQSFHIDLAEVL 396
           ++D ++      +   ++       H +G   +    V+      G    +    + E  
Sbjct: 351 VVDYAHTEVGLELVLDVARAVVGRDHADGGVRSEGGRVICVYGAAGRRDPAKRPKMGEAA 410

Query: 397 SLYNISHVW----LSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           S     ++            A+ D   A     +               +    GD+VVV
Sbjct: 411 SRLADVNIITNDDTYDEDPQAIADEVMAGADPSNTTIVLDRRDAIRQALTQARPGDIVVV 470

Query: 450 --KS 451
             K 
Sbjct: 471 AGKG 474


>gi|282854263|ref|ZP_06263600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|282583716|gb|EFB89096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Propionibacterium acnes J139]
 gi|314923250|gb|EFS87081.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL001PA1]
 gi|314967017|gb|EFT11116.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL082PA2]
 gi|314980973|gb|EFT25067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA3]
 gi|315091704|gb|EFT63680.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL110PA4]
 gi|315093062|gb|EFT65038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL060PA1]
 gi|315103164|gb|EFT75140.1| UDP-N-acetylmuramyl-tripeptide synthetase [Propionibacterium acnes
           HL050PA2]
 gi|327327837|gb|EGE69613.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 499

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 82/465 (17%), Positives = 139/465 (29%), Gaps = 46/465 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + GI++DSR + P + +  + G H  G  F   AV+ GA  V+ + D       
Sbjct: 10  NDNGPAITGITLDSRQVRPGDLYVGLHGLHAHGASFAASAVESGAVAVLTDEDGAILAAE 69

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTY 137
             +P+  VDD   A+   A           T+  ITG+ GKTTT  ++   L +      
Sbjct: 70  AGVPIIVVDDPRAAMAVAAAKVFGHPSDAMTMFGITGTNGKTTTAFLVEAGLCAAGHHVG 129

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDF---------GIFE-------LGMSHLGEIRFLTHL 181
                     G  L  AR  V              + E       + +S           
Sbjct: 130 TIGTIGFRLDGEELPSARTTVTTPEAPDLQGLFAAMAERGASDVVMEVSSHALALQRVDG 189

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T +   HL   + ++   +AKA +F   +      +N DD     L  +  A
Sbjct: 190 TCFDVVAFTNLGRDHLDFHNTLDNYFNAKARLFT-PDLARVGVINVDDPRGRQLVERMQA 248

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+    +    + +D+Q+  W      +  +V        +     G    +N  M L 
Sbjct: 249 NGV-KAVTTSIHQPSDYQVTSWHAARAGAIFDVSTPSGERTLELSLPGEFNVRNAAMALA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           ++       D     L          +                +  A  +++ AA S + 
Sbjct: 308 MLEAAGLAFDDVADGLCSAQVPGRMERVDLADDAPTALVDFAHTPQAIASALDAARSSVD 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
                  GR IAVLG     G             ++      V ++  +           
Sbjct: 368 ------GGRLIAVLGA----GGDRDVAKRGPMGQIAAERADIVIVTDDNPRTEDPAVIRA 417

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +A    + V                   GDV+ V  K 
Sbjct: 418 AVLEGAHEAAGDGVIVIDGGRRREAINEALRMAEAGDVICVLGKG 462


>gi|39998164|ref|NP_954115.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
 gi|81701142|sp|Q748D2|MURE_GEOSL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|39985110|gb|AAR36465.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Geobacter sulfurreducens PCA]
          Length = 509

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 162/492 (32%), Gaps = 59/492 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + +   ++       +NG+  DSR +     FFA+KG   DGHDFI  A ++G
Sbjct: 1   MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV+  +  A  G        V D   A++++A     +      ++ ITG+ GKTTT
Sbjct: 61  AVAVVLEDETRAPCGME---WIRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++   +S      A +G+ +   G               +   +   + E      + 
Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLN 226
           +S     +      R  +AV T +   HL     +E      A+                
Sbjct: 178 VSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRA 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A+     +  + S+G + +A  +        +     +     +     H
Sbjct: 238 AAINRDDSYGARLVETAVAPVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTAPFHSH 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +     L   +D  +  +       GR        N+   T++ +  
Sbjct: 298 LLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGR---LERVHNERGVTVLVDYA 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397
           +   A      +VL  +S    GR I V G     G         +   +S         
Sbjct: 355 HTGDA----LENVLKTVSELATGRIITVFG----CGGDRDRGKRPVMAEISGRYSHLTIV 406

Query: 398 ---------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSL 441
                       I    L+G   + L++   R ++  + E       +         +  
Sbjct: 407 TSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVA 466

Query: 442 VDGDVVVV--KS 451
           V GD+V++  K 
Sbjct: 467 VAGDIVLLAGKG 478


>gi|49483182|ref|YP_040406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425070|ref|ZP_05601496.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427734|ref|ZP_05604132.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430369|ref|ZP_05606751.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433073|ref|ZP_05609431.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257435970|ref|ZP_05612017.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282903566|ref|ZP_06311454.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|282905340|ref|ZP_06313195.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908313|ref|ZP_06316144.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282910597|ref|ZP_06318400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282913793|ref|ZP_06321580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282918718|ref|ZP_06326453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282923826|ref|ZP_06331502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|283957763|ref|ZP_06375214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293526372|ref|ZP_06671057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295427507|ref|ZP_06820139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591542|ref|ZP_06950180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|56749240|sp|Q6GI66|MURE_STAAR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|49241311|emb|CAG39993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257272046|gb|EEV04178.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274575|gb|EEV06062.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278497|gb|EEV09116.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281166|gb|EEV11303.1| gUDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284252|gb|EEV14372.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313798|gb|EFB44190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C101]
 gi|282316528|gb|EFB46902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus C427]
 gi|282321861|gb|EFB52185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M899]
 gi|282325202|gb|EFB55511.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327978|gb|EFB58260.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330632|gb|EFB60146.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595184|gb|EFC00148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus C160]
 gi|283789912|gb|EFC28729.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290920444|gb|EFD97507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M1015]
 gi|295127865|gb|EFG57499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576428|gb|EFH95144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312438607|gb|ADQ77678.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH60]
 gi|315193680|gb|EFU24075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 494

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +      S ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F     ++  +    +      + +V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|89895658|ref|YP_519145.1| hypothetical protein DSY2912 [Desulfitobacterium hafniense Y51]
 gi|89335106|dbj|BAE84701.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 496

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/471 (16%), Positives = 148/471 (31%), Gaps = 42/471 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++   I+  +        + G+ +DSR + P + +  + G + DGHDF   A+ +GA 
Sbjct: 11  LSEIASGIEIVNHVGDQDTLIQGMVMDSRQVQPGDLYACVPGMNVDGHDFAAQAIAQGAA 70

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            ++V       I  L IP   V  V   +  LA        A   ++ +TG+ GKTT   
Sbjct: 71  ALLVER-----ILPLDIPQLQVKKVREVMGNLAANLYDHPAAKLEVVGVTGTNGKTTITY 125

Query: 125 MLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV-------DFGIFE------LGMS 170
           ++    +   K    IG+    I G  L   R   +           + E      + +S
Sbjct: 126 LVESIAAGEGKKVGLIGTLGARIAGRELPGNRTTPEAIDLQKLLKEMVDEGVQLAVMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +            + + +   HL     +EE   AKA++F GL       +   + 
Sbjct: 186 SHALVFGRVTGCEFDAGIFSNLTQDHLDYHKTMEEYLQAKAQLFSGLTGVKEPKVGVVNG 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +          +     +   D++       ++     V+ +G   +V +   G 
Sbjct: 246 DDPAAETLIRLSAAPVVTYGVNADLLDYRAEDILLTADGVKFTVRFKGGESQVEYSTPGM 305

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L                 +AL+      GR +  R             + +   
Sbjct: 306 FSVYNALAAFAWGVESGRSPGQVREALAAVQGVPGRFESVRMGQPFQIIVDYAHTPDG-- 363

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +V        +GR I V G     G             ++     HV ++  +
Sbjct: 364 -----LENVCRTAQEFTQGRLITVFG----CGGDRDKGKRPQMGAIAEELSDHVIVTSDN 414

Query: 411 VL------ALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                    ++D L     + Y+  ++             +GD V++  K 
Sbjct: 415 PRTEDPRQIIRDILEGIEGIDYTANVNRREAIECACLLAKEGDTVLIAGKG 465


>gi|161504755|ref|YP_001571867.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866102|gb|ABX22725.1| hypothetical protein SARI_02878 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 495

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 149/478 (31%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEARDEATDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVDYHDRGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +  A           
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFSAAGKATVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +  V   E              D DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 467


>gi|315918171|ref|ZP_07914411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
 gi|313692046|gb|EFS28881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 489

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 79/469 (16%), Positives = 147/469 (31%), Gaps = 47/469 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 12  EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 71

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           ++V+ ++        I    + ++   L  LA       +    I+ +TG+ GKTTT  +
Sbjct: 72  IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 128

Query: 126 LTIALSSIK------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLG 173
           L   L   K        Y                  +   +     E      + +S   
Sbjct: 129 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYEEGLEYIIMEVSSHA 188

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 +++    A+ T +   HL     +E+   AK ++F  L       LN DD + +
Sbjct: 189 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKILNVDDEYGK 248

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L+ + H +   T             ++      E     V+L     +           
Sbjct: 249 RLQEEFHGISYGTKQ---------AGVQGKILGFEGGKERVELSLFGKKKECKIQILGGF 299

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +   I  +    +        V   +   G+       Q +  +ID ++  +    
Sbjct: 300 NLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDALE- 358

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
               ++L  I      + I + G     G         +   ++      V L+  +   
Sbjct: 359 ----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 410

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +K    +  H+   E               GD+V++  K 
Sbjct: 411 ENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 458


>gi|123965709|ref|YP_001010790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9515]
 gi|123200075|gb|ABM71683.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9515]
          Length = 511

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 147/480 (30%), Gaps = 40/480 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL  +       +    +N IS +S+ +     F  + G + DG  + + A++ GA 
Sbjct: 6   LHKLLDLVGIIPSLDLIDHKINNISFNSKEVQKGTLFLGMPGLNVDGGKYCIEAIENGAE 65

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
             ++ +     IGS+      V  D++     ++      R   K  +I +TG+ GKTT 
Sbjct: 66  AAIIGSAAKQKIGSIDRKRILVIEDNLDYIFGQIVAEFWNRPSRKLKLIGVTGTNGKTTI 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             +L   L  + K             G             ++   ++  +        L 
Sbjct: 126 TFLLEYLLKKLGKKTALYGTLFNRWPGFSEVASHTTDFADKLQKKLNAAVEAESEFAILE 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIFL 225
           +S     +          A+ T +   HL   S +E     K          EK G   L
Sbjct: 186 VSSHSIAQNRISGCEFEAAIFTNLTQDHLDYHSDMESYFQIKRKLFFPPYLTEKDGISVL 245

Query: 226 NYDDSFFELL---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           N DD +   L     K  +L    I      K+  F +   K     S        + ++
Sbjct: 246 NIDDPWISKLSFDLEKGSSLVSTKITDSEFEKDDFFFVTDKKFTESGSTCIFHTPREKIK 305

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N +  + I+  L   +    K +  F    GR ++     +     L 
Sbjct: 306 LFVPLVGEFNLMNAIQAITILYKLNFSLKDLSKLIQSFPGAPGRMEKIEIDNDDVSSLLP 365

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           VL  I    EG+ I V G     G         L   ++     
Sbjct: 366 TLIVDYAHTP-DGLKKVLKSIKKLCEGKLITVFG----CGGDRDCSKRPLMGSIAAEFSD 420

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H++++  +            +   + +   +                    D+V++  K 
Sbjct: 421 HLFITSDNPRSEDPQKIVNDILMGIEKRDQITIEIDRFKAINESIKFANKEDIVLIAGKG 480


>gi|220927932|ref|YP_002504841.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
 gi|219998260|gb|ACL74861.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           cellulolyticum H10]
          Length = 486

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 145/479 (30%), Gaps = 55/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L+  +   +I       V+ I+ DSR       F  I+G   DGH +I  A++ G
Sbjct: 1   MKLRELVMNLNIKAINGNLDVEVDSIAYDSRKTKQGSLFVCIEGTVVDGHKYINDAIENG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--------------- 109
               +V   +V       I    +DD    L  ++ A      +                
Sbjct: 61  TKAFLVQKHVVV---PEGITTIEIDDTRFGLAAVSDAFFGHPSSKFNLIGITGTKGKTTT 117

Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + AI  + G+          L   +  Y    +  ++    L    +   VD  + E
Sbjct: 118 TYMVKAIMEAAGRNMGLVGTLANLIGSEVLYTSRTTPESYDLQSLFSDMVEKKVDSTVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S  G            I V T  +  H+     + +EE  +AKA++F+   K     
Sbjct: 178 V--SSQGLELHRVAKCDFDIGVFTNFSRDHIGPKEHATLEEYFNAKAKLFKMCRKAVINI 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +        L           ++++G S  AD       + +  ++  +     S+++ 
Sbjct: 236 DSEHGRKMAELAK-------CKVFTYGLSDKADIWASDIVKKTGHTYFTLNSPWGSIDIE 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L  +G   ++       ++         GR +  +   N         
Sbjct: 289 TDLQGEFNIYNALAAIGSCCLIPGITLEHVRLGLTKVTVPGRMESVKTGGNYSVLIDYAH 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + ++          VL  +     GR +++ G     G             +S       
Sbjct: 349 TPDS-------LEQVLKTVKEFAHGRVVSLFG----CGGDRDKGKRPAMGEISGNIADFT 397

Query: 405 WLSGFHVL---------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            ++  +   +              F   + VDGD++++  K 
Sbjct: 398 IITSDNPRTENPEQIIEDIEAGIKNTNGKYIKITDRRQAIKFALENAVDGDIIILAGKG 456


>gi|296394969|ref|YP_003659853.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
 gi|296182116|gb|ADG99022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rotundus
           DSM 44985]
          Length = 506

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 76/502 (15%), Positives = 152/502 (30%), Gaps = 52/502 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L        +    +G V G++  ++S+ P + F A+ G    G +FI  A ++GA 
Sbjct: 15  ISELADVAGAVVLAGDERGRVRGVAQAAQSVEPGDLFVALPGARTHGANFISVAQERGAA 74

Query: 67  LVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
            V+ +    A +G        V      +L  L            T++ +TG+ GKTTT 
Sbjct: 75  AVLTDEAGAACLGGTDAMAVLVAAAPRASLGALCALVYGDPSARLTVVGVTGTAGKTTTT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF--ELGM 169
            +L     +  +    IG+    IG             P T + + V  + G+    + +
Sbjct: 135 YLLESLFRAAGRATGVIGTVETRIGSQSVASSFTTPEAPQTQSLLAVMAEAGVEVVLMEV 194

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S            R      T ++  HL +   +E    AKA++F+              
Sbjct: 195 SSHALDFGRVDGTRFAAGGFTNLSHDHLDHHGDMESYFQAKAKLFQPGSSVAARRAVICV 254

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              +    +   +   ++      + AD+ + + ++    +   +    +  +       
Sbjct: 255 D--DSWGQRMSRVARGSVTVATGDEAADWAVLERREDELGAQQVLVRGPRERQFAFRLGL 312

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                     L +       V    + +  +      G+  R    Q F  ++D ++   
Sbjct: 313 LGRHNAANAVLAVGLAEATGVRVTEELVRGWADIAVPGRLERVQAGQDFLAVVDYAHKPE 372

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +      VL  +  H  GR   V+G     G         +   +S      V ++  
Sbjct: 373 SLA-----KVLQALREHTAGRIAVVVGA----GGDRDQGKRPMMGEVSASGAELVVVTDD 423

Query: 410 HVLA---------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS----- 451
           +  +         +      S         +              GD V+V  K      
Sbjct: 424 NPRSEDPAAIRAQVLAGAQGSSRAEVWEVASRAEAIARAVRWARAGDTVLVAGKGHETYQ 483

Query: 452 ------SNSCGFYRLINLLLEE 467
                 S+      L   + E 
Sbjct: 484 EVNGVKSHFDDREILARAIRER 505


>gi|209523323|ref|ZP_03271879.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
 gi|209496474|gb|EDZ96773.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrospira maxima
           CS-328]
          Length = 498

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 158/461 (34%), Gaps = 45/461 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIG 79
              + G++ +S +  P + F  + G   DG DF   A+  GA   +V+     +      
Sbjct: 21  DMEITGLATNSHACKPGDLFLGMPGTRVDGGDFWPSAIASGAVAAIVSQSAASNTPPETD 80

Query: 80  SLSIP-VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK- 135
           S +IP V    D+  A  ++A A          ++ +TG+ GKTTT  ++   LS++ + 
Sbjct: 81  SDTIPCVIPAADMTTACAEIATAFYNHPAQTLKLVGVTGTNGKTTTTHLIEFLLSNLDQP 140

Query: 136 -------TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTH 180
                       G     +        +             FG+ E+    L + R L  
Sbjct: 141 TALLGTLYTRWPGFQEVAVHTTPFAVELQHQLADAVGAGCQFGVMEVSSHALHQGRVLGC 200

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             R  +AV T +   HL     +++   AKA +F      G   +N DD + + L A+  
Sbjct: 201 PFR--VAVFTNLTQDHLDYHPTMDDYFEAKALLFSDDYLQGKAIINADDDYGKKLMARLG 258

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +    +        +AD                +     S       +G +   N+L  L
Sbjct: 259 SDRFWSYSVS--DPSADIWADSLVYQPTGIKGVLHTPMGSASFSLPLVGQYNLSNLLAAL 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G    L  D+   + +L  F    GR +R + +  Q    ++D ++  +        ++L
Sbjct: 317 GAGLALGLDLSAMVDSLPAFGGVPGRMERVQLSPEQDITVIVDYAHTPDSLE-----NLL 371

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVL 412
               P   GR I V G     G+  ++    + ++ +  +   V  S           + 
Sbjct: 372 KASRPFIPGRMICVFG---CGGDRDRTKRPKMGKIAADLSDLAVVTSDNPRTEDPDRILQ 428

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +P  +                     GD V++  K 
Sbjct: 429 DILAGIPADVKPIVIGDRAKAIRTAIDEAQPGDGVLIAGKG 469


>gi|294788564|ref|ZP_06753806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
 gi|294483441|gb|EFG31126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Simonsiella muelleri ATCC 29453]
          Length = 810

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 155/479 (32%), Gaps = 49/479 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +             +  ++G   +  DSR I P + F A +G + DG  +I  A++ G
Sbjct: 3   SQIAAPKNAQL--PELKCHISGSQTLHADSRKIQPNDIFIACQGEYADGRLYIQSAIENG 60

Query: 65  AGLVVVNTD----MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           A  V    D            + P+    D+      LA A    S     I  +TG+ G
Sbjct: 61  ASFVFWEDDGTFQWQPEWAVSNQPI---SDLKQCAGILANAVYQNSTDSLNIFGVTGTNG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------- 164
           KT+  + +  A+  ++   +C        G    L          +              
Sbjct: 118 KTSITQWIAQAIDILENKKSCAIIGTVGNGFFGELQETTHTTPDPVSVQTLLRQFKQLGA 177

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G  ++  + V    A+ T +   HL   + + E  + KA +F        
Sbjct: 178 NHIAMEVSSHGLHQYRVNGVPFKTAIFTNLTRDHLDYHNSMAEYGATKARLFHWQGLENA 237

Query: 223 IFLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           I  + D+   +L+   K        IYS+G ++NAD ++ ++   ++   + +Q    + 
Sbjct: 238 IINSDDEFGSKLILQLKQQYADNLNIYSYGFNENADIRITEFIANTQGMKIGLQTPWGNG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G   AQN    +G +     +   A+ ALS   P  GR               
Sbjct: 298 TTQTRLLGRFNAQNFAAAIGALCASGFEFQAALNALSQIRPATGRMDCIINENKPLVVVD 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A   ++              E +   V G     G    S    L   ++  + 
Sbjct: 358 YAHTPDALEKALTTLRE-----IQSPESKLWCVFG----CGGNRDSGKRPLMGAVAAQHS 408

Query: 402 SHVWLSGFHVL------ALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
               ++  +         + D LP   +    +           +     D+V++  K 
Sbjct: 409 DRPIVTSDNPRMEDPQAIIADILPAVPNAALVQVDRQTAIEQTIAQAAPQDIVLIAGKG 467


>gi|90413035|ref|ZP_01221033.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
 gi|90326050|gb|EAS42489.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Photobacterium profundum 3TCK]
          Length = 506

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 63/461 (13%), Positives = 135/461 (29%), Gaps = 44/461 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
           +  V  ++IDSR I   + F A+ G   DG  FI  A+  GA  V+   D +A+ G +  
Sbjct: 29  EHSVANMTIDSRQIEVDDLFVAVNGHAVDGRGFIPAAIHAGATAVLAEADSIANHGDIVE 88

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              I +     +   L+ +A     +      ++A+TG+ GKTT  ++L     +    Y
Sbjct: 89  QDGIVIIYFQQLNQYLSAIANRFYAQPDTRLKLLAVTGTNGKTTISQLLAQW--ANLIGY 146

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHL 181
                     G+  +L          I                  + +S  G ++     
Sbjct: 147 NAGVMGTTGNGLLNSLIPAVNTTGNAIEIPHVLHDLVEQGADFAAMEISSHGLVQGRVKA 206

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           ++   ++ T ++  HL     +   A AK  +F   +    +    DD     L    +A
Sbjct: 207 LQFVASIFTNLSRDHLDYHGDMANYADAKKCLFTEHQAGIPVINADDDIGLSWLADLPNA 266

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           + + T  +          L           + +                       + L 
Sbjct: 267 VAVVTDKARLGEGYQGQALWLTDVAYSTQGVNISFDSSWGAGQFTAPLVGSFNVSNLLLA 326

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + ++L           +        G+      +     ++D ++  +          L 
Sbjct: 327 LATLLALGHSIDKLIAAAPRLTAVIGRMEVFQRSDKPMVVVDYAHTPDALE-----KALQ 381

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            +  H +G+   + G     G         +   +S      + ++  +           
Sbjct: 382 ALRVHCQGKLWCIFG----CGGDRDIGKRPMMAEISERLADQIIITDDNPRTEAPAGIVS 437

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   L                 +        D++++  K 
Sbjct: 438 DMLQGLTLPQQAQVIHDRKLACTYAIEHARANDIILLAGKG 478


>gi|297199069|ref|ZP_06916466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
 gi|197715978|gb|EDY60012.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sviceus ATCC 29083]
          Length = 506

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +         Q  V GI+ DSR++ P + + A+ G    G DF+  AV  GA 
Sbjct: 17  LAELADQLGAEPPQKAAQ--VTGITHDSRAVRPGDLYAALPGARLHGADFVTQAVGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  V+D    + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGAERAAATGLPVLVVEDPRARMGELATTIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L  ++ T              +   R   +                    + +S 
Sbjct: 135 LVEGGLKGVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          I V T ++P H+   SG+E+   AKA++F        +    D+  
Sbjct: 195 HALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPERSRLGVVNLDDEYG 254

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             L+K          + +F    + D   R              + G   E +       
Sbjct: 255 RRLVKEA-----TVPVVTFSAEGHPDADWRAADVEVGPMDSTFTVIGPKDERISARSPLP 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L A       A        G   R         +  + +  +    
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
              A  SVL  +    EG+   VLG     G+   +    +    +    + V  S    
Sbjct: 366 KTDAVESVLKALRKVTEGKVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNPR 422

Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               LA+   + +            V   E          +    GD V+V  K 
Sbjct: 423 SEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477


>gi|331082373|ref|ZP_08331499.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400859|gb|EGG80460.1| hypothetical protein HMPREF0992_00423 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 497

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 161/475 (33%), Gaps = 43/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL+ ++   +       +  I+ DSR       FF IKG   DGH +     +K
Sbjct: 8   MKKLVDLLEKLEYQCLQGTMDKEITDITFDSRKAEKGCLFFCIKGAVSDGHTYAKEVAEK 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA +++V   +        + V  V++   A+  ++ A       K   I ITG+ GKTT
Sbjct: 68  GAAVLIVQDKVEVPEE---VTVIQVENSRYAMACISAAWFGHPAEKLKTIGITGTKGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167
           T  ++   L +       IG+    IG              +        V+       +
Sbjct: 125 TTYLVKSILENAGYKTGLIGTIETIIGEKKIPSANTTPESYLVQKYFAEMVEAGCDSVVM 184

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G +   T   +  I + T I P H+   +  ++ A          ++      N 
Sbjct: 185 EVSSQGLMLHRTAGFQFDIGIFTNIEPDHIGP-NEHKDFADYLRCKALLFKQCKVGIFNA 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + +           + +FG S+ AD +    K  + +  + +    K +      
Sbjct: 244 DAEHLDEILE----GHTCEVETFGFSEKADLRAENTKLVTGKGTLGIAYDVKGLMNFPVE 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           I    A ++  +L  +++      T           + +G+     ++  F  +ID ++N
Sbjct: 300 IDLPGAFSVYNSLTAIAVCRHFGVTPENIQKALKQAKVKGRIEMVKVSDEFTLMIDYAHN 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           A      +  S+L+ +  +   R + + G     G  S+    ++ EV        +  S
Sbjct: 360 A-----MSLESLLTTLKEYKPNRLVCLFG---CGGNRSKLRRYEMGEVSGKLADLTIITS 411

Query: 408 G-------FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                     ++             Y E         +       GD+VV+  K 
Sbjct: 412 DNPRDEEPQEIIDDIKIGIGKTSGKYVEIIDRKEAIAYAIHHGQPGDIVVLAGKG 466


>gi|262341154|ref|YP_003284009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272491|gb|ACY40399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 501

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 83/477 (17%), Positives = 156/477 (32%), Gaps = 51/477 (10%)

Query: 7   FHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             D+L+ +     +G      +  IS+ S+ I     F A KG   DGH+FI +A+Q GA
Sbjct: 5   LKDILKKVDVLKIVGKNTSKLIERISMYSKIIQKNMIFVAKKGKTTDGHEFITNAIQNGA 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             +V     + S     I    V D + AL  ++         K  +I ITG+ GKT+  
Sbjct: 65  HTIVCEK--IPSSIHKKITYVLVPDSMNALGIISSNFYDHPTKKIKLIGITGTNGKTSVA 122

Query: 124 EMLTIALSSIKKTYACIGSYNNH---------IGVP-----LTLARMPVDVDFGIFELGM 169
            +L    S + +    I +                P          + +        + +
Sbjct: 123 TILHQLFSKMGEKNILISTMGIQILSKKYPTTHTTPNIIEINKYLNLSIRKGCKYAFMEV 182

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +     +     V T I   HL      +   S K   FE L K     +N DD
Sbjct: 183 SSHGIHQKRIAGLLFQGGVFTNITHDHLDYHESFDHYLSTKKFFFENLSKKAFALINSDD 242

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +        +   Y +G  KNA+F+++  K+    S + +       +++     
Sbjct: 243 ENSYKIIKDI----LSKTYFYGLKKNANFKIQILKESIHGSQLLIDGHKIFTKLIGTFNV 298

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
           Y++       + +       +            K  RG+  +   N G   ++D ++N +
Sbjct: 299 YNLLAGYATAILLGKKKDNILKKIKN------IKPIRGRFEQFISNSGIRVIVDYAHNPD 352

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              +K  ++ L +I  + +G+ I V+G     G         L   +          +  
Sbjct: 353 --GLKTVLNTLKKIK-NDDGKLICVIG----CGGNRDIKKRSLMGKIVYETCDVSIFTSD 405

Query: 410 ------------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        +   K ++      +                    D++++  K 
Sbjct: 406 NPREEDREKILVDMKNFKSSIYKDKESILTFVNRKKAIETAIQIAKKKDIILIAGKG 462


>gi|298507102|gb|ADI85825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sulfurreducens KN400]
          Length = 509

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 87/492 (17%), Positives = 162/492 (32%), Gaps = 59/492 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL + +   ++       +NG+  DSR +     FFA+KG   DGHDFI  A ++G
Sbjct: 1   MRLEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV+  +  A  G        V D   A++++A     +      ++ ITG+ GKTTT
Sbjct: 61  AVAVVLEDETRAPCGME---WIRVGDARLAMSRMAALFYGQPTDGVPVVGITGTNGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             ++   +S      A +G+ +   G               +   +   + E      + 
Sbjct: 118 TYLVEAIMSRAGIPAAVLGTISYRFGSKLVPAPHTTPESVELQATIRDLVDEGAKAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTIFLN 226
           +S     +      R  +AV T +   HL     +E      A+                
Sbjct: 178 VSSHALEQRRVDSCRFDVAVFTNLTRDHLDYHRDMESYFGSKARLFTELVAPDGVKPRRA 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A+     +  + S+G + +A  +        +     +     +     H
Sbjct: 238 AAINRDDSYGARLVETAVAPVISYGLAADAAVRAENVVFSVDGIAGTLVTPFGTALFHSH 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +     L   +D  +  +       GR        N+   T++ +  
Sbjct: 298 LLGRFNLYNILAAVAAGVGLGLSLDVILGGIEGDVRVPGR---LERVHNERGVTVLVDYA 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--------- 397
           +   A      +VL  +S    GR I V G     G         +   +S         
Sbjct: 355 HTGDA----LENVLKTVSELATGRIITVFG----CGGDRDRGKRPVMAEISGRYSHLTIV 406

Query: 398 ---------LYNISHVWLSGFHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSL 441
                       I    L+G   + L++   R ++  + E       +         +  
Sbjct: 407 TSDNPRTEEPAAIIKEVLTGIIPMGLREYDARELNRGFVEKGFTSLVSRHDAIRLAATVA 466

Query: 442 VDGDVVVV--KS 451
           V GD+V++  K 
Sbjct: 467 VAGDIVLLAGKG 478


>gi|119897170|ref|YP_932383.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Azoarcus sp. BH72]
 gi|119669583|emb|CAL93496.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 501

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 134/452 (29%), Gaps = 34/452 (7%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI+ DSR + P   F A  G   DG  +I  A+++GA  V+         G L +P F V
Sbjct: 21  GITADSRRVGPGAVFAAWPGHVTDGRRYIASAIERGAAAVLWEEGDGFHPGELPVPGFAV 80

Query: 89  DDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYA-------- 138
             +      LA     R  A +    +TG+ GKTT  + L  AL  +             
Sbjct: 81  PRLRELAGALAHEIYDRPSARLWMAGVTGTNGKTTVTQWLARALGELGSRCGIVGTLGSG 140

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITTI 192
                +  +        +   +   + E      + +S +G  +   + V   +AV T +
Sbjct: 141 FPDQLSASLNTTPDALELHATLARLLGEGAAAAAMEVSSIGLDQGRVNGVEFDVAVFTNL 200

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL----NYDDSFFELLKAKSHALGIKTIY 248
              HL     ++  A AKA +F     +  +              L+ A    +   T  
Sbjct: 201 TRDHLDYHRTMDAYAEAKARLFALPGISRAVINLDDAFGLTQARRLVAAGQVDVIGYTCV 260

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +         ++    +              +       +      N+   L ++  L  
Sbjct: 261 ASNADAVPGARVLVADRLQASPSGLQFSLHWAGRQSDLQVRMVAPFNVSNLLAVIGALVM 320

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                 +AL+V         R +     G   ++ + Y   P ++   +  +        
Sbjct: 321 RGVAVEEALAVVGRLNPPEGRMQLVGGIGEPLIVID-YAHTPDALAKVLEAVRGTVRSRG 379

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------LKDALPRS 421
           GR + V G     G         L   ++      V ++  +  +          A    
Sbjct: 380 GRLVCVFG----CGGDRDPGKRPLMGEVARQLADRVVVTSDNPRSEDPRKIIDAIAAGAG 435

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                  DVVV+  K 
Sbjct: 436 ASADCIVDRAEAIRIAVGEAGPDDVVVLAGKG 467


>gi|170025738|ref|YP_001722243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis YPIII]
 gi|169752272|gb|ACA69790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis YPIII]
          Length = 495

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
           +     +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFTAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     V T ++  HL     +    +AK  +F   +    I    DD     L     
Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255

Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +    +  K  N  +    K       + +         E+    +G     N+L+ 
Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +    +   + A     P  GR + +              + +A           
Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L+    H  G+   V G     G         L   ++      V ++  +         
Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L  +  V                  + DVV++  K 
Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
          Length = 734

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 159/461 (34%), Gaps = 32/461 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60
           T   L + +            +   +   + I P  A+FA                   A
Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVAA 342

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA +++    +        IP   V ++  AL++ AV  +       +A+  S  K 
Sbjct: 343 FEKGASVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
               M+   LSS  +T   I   NN+  +   +       +  +  +   + G +  ++ 
Sbjct: 397 NPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTEAAVINVSCVNGGNVERVSQ 456

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +A++T+   +         E+   K ++  G+ ++G + +N DD     +     
Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    +     ++ AD+     +    +   ++     +  +  +    H     L T 
Sbjct: 517 DIITIGV----DNRMADYYADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  I+       I A+  + P  G         N+    +I +  N    S+ AA+  L
Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGAALKEL 628

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
             +    + RRIAVL ++ +  E     +  +  +++  ++      G     L      
Sbjct: 629 CTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVDITVCYGETAAELMKTADL 688

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +S  V    T   L  F++ +L D D V+ K S       +
Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRDNDAVLFKGSTVTELDEI 729


>gi|322421367|ref|YP_004200590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
 gi|320127754|gb|ADW15314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M18]
          Length = 505

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 75/494 (15%), Positives = 148/494 (29%), Gaps = 64/494 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       +  +  DSR + P   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLRQLLACLTAPKVTGDDAAEITSLCYDSRQVRPGALFFALRGVKSDGTEFVESAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV +     +     +    V D   A++ +A            ++ ITG+ GKTTT
Sbjct: 61  AVAVVADRPCAVA----GVTCIEVPDPRRAMSLMAALFYGVPTAGIPLVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLAR-----------MPVDVDFGIFE 166
             ++   +       A +G+ +   G      P T              +       + E
Sbjct: 117 TYLMEGIMEQAGIPTAVLGTISYRFGATSIPAPNTTPESVDLQQILRDLVDQGAKGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224
           +  S     +         +A+ T +   HL     +E    +K  +F            
Sbjct: 177 V--SSHSLEQRRADGCLFDVAIFTNLTRDHLDYHLDMESYYQSKLRLFTDLLAPTGEKPL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   A+  A     + ++  +  AD  + + +         +      +++ 
Sbjct: 235 RRAVVNLDDPYGARIAAEAAAPVLTYAAAGPADLTVAEVEFSVHGIRCRLNSPVGEIDID 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +G    L    D     ++      GR        N     ++ +
Sbjct: 295 SDLLGRFNLYNILGAVGAGLALGIPKDAIEAGIAGHKKVPGR---LERVPNDQGIIVLVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A      +VLS I+     R I + G     G         +   ++       
Sbjct: 352 YAHTGDA----LENVLSTIAELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403

Query: 405 WLSG-----FHVLALKDALPRSIH--------------------VHYSETMDGLFLFIQS 439
            ++          A+ D +   I                         E+          
Sbjct: 404 IVTSDNPRTEEPKAILDDIRAGITPLRLKEYSLEELEGGLREKGFATIESRRTAVRAAIM 463

Query: 440 SLVDGDVVVV--KS 451
           +   GD+V++  K 
Sbjct: 464 AARPGDIVLLAGKG 477


>gi|320106394|ref|YP_004181984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
 gi|319924915|gb|ADV81990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Terriglobus saanensis
           SP1PR4]
          Length = 506

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/484 (14%), Positives = 150/484 (30%), Gaps = 50/484 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F ++++ +   ++ + P   V G+  DSR       F A++G   DG+ ++  A++ G
Sbjct: 1   MRFEEIVRGVTTLAVRLAP-VDVRGVEYDSRRTGTGSLFVAMRGEATDGNRYVAVALKLG 59

Query: 65  AGLVVVNTDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
           A  V+ ++  V         I V  V+    AL +++       +    + A+TG+ GKT
Sbjct: 60  AVAVLTDSPTVFEDLTSRSDIGVALVEYGRRALAEVSANFFGHPEQVLKLCAVTGTNGKT 119

Query: 121 TTKEMLTIALSS----------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           TT  ++   L S                     +   +  +   + +    +       +
Sbjct: 120 TTAFLIEGLLRSVSRKSVLLGTIETHVVENVRPSPHTTPESRDVLEIFAEGVRAGATEAV 179

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI--EEIASAKAEIFEGLEKTGT 222
            E+  SH      +   +   +AV T +   HL     +     A A      G      
Sbjct: 180 MEM-SSHALVQERV-WGLPLDVAVFTNLTQDHLDYHGTMGEYARAKALMFRGVGTLPPRI 237

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR---KWKQCSEQSWMEVQLQGK 279
             +N DD    ++   +    + T     +  + +         K  +  +   +     
Sbjct: 238 AVINADDPSAGMMVEAASGCEVWTYRVGAREFDENAYEFVADDVKLGAGWTEFALVTPMG 297

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V     G     N++  +         +D  ++  +   P  GR   +    N    
Sbjct: 298 ERVVRSQLTGRVNVYNLVAAMATGMARGLSLDECVRGAAELLPVPGR---FETVGNDLGI 354

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++ +  + +      A+  L  ++    G    +   M   G              +  
Sbjct: 355 TVVVDYAHTDD-----ALRNLIGLARELVGEGRVI--TMFGCGGDRDRTKRPKMGRAAGD 407

Query: 400 NISHVWLS-----GFHVLALKD----ALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
               V ++          A+       L  +  +   E           +    GD+V++
Sbjct: 408 GSDLVIVTSDNPRSEDPAAIAADVLVGLQDTKAIVEVELNRHVAIRRAITVAKAGDIVLL 467

Query: 450 --KS 451
             K 
Sbjct: 468 AGKG 471


>gi|256827373|ref|YP_003151332.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
 gi|256583516|gb|ACU94650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cryptobacterium curtum
           DSM 15641]
          Length = 494

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 87/474 (18%), Positives = 153/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L + I    +G      V+GI+  S ++   +AFF I G + DGH F   A+  G
Sbjct: 3   MTCRELFEGIDCTFLGNA-DEPVSGIAYRSDAVTAGDAFFCIVGTNVDGHSFAQDAIDHG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V    +  +  +  +    V D   A+   A            ++ ITG+ GKTTT
Sbjct: 62  ARVIVAQRKVYLA-DATDVVEIIVSDTRRAMAAAAANFYGHPSTDFHLVGITGTNGKTTT 120

Query: 123 KEMLTIALSSIKK---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELG 168
             ++        +                 +     P       L     D       + 
Sbjct: 121 TYLVEHIAEVAGRTTGVIGTVGNRIAGRLEHAERTTPESVDLQHLFARMRDAGCDTVAME 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S        T      +   + +   HL      E    AKA +F        +    D
Sbjct: 181 VSSHALDLERTWGTHFAVTAFSNLTQDHLDYHKTFEAYFEAKALLFSSDYPARRVICIDD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ELL  +  A     I S G    A       K  +  + + + ++G+   + +  +
Sbjct: 241 KWGQELL--RRCAAAGDRILSVGFDPAAQIHPVSVKYATTHTDVVLDVRGQEYSLTYPLV 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+++ LGI   L   ++  ++ALS      GR +R     + G    +D ++  
Sbjct: 299 GRFNVSNVMLALGIGLELGIPIEVVLRALSESPQVPGRLQRISAVHDGGISVFVDYAHTP 358

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +          +S ++   +GR I V G     G    +    L    +L     V  S 
Sbjct: 359 DA-----LRKAISAVANLTDGRVIVVFG----CGGDRDATKRPLMGQAALSGDFAVVTSD 409

Query: 409 ----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   A+   +       S                 +    GD ++V  K 
Sbjct: 410 NPRSEDPDAIISDILEGMESASERFEVHPDRREAIARAIALANTGDAILVAGKG 463


>gi|307332567|ref|ZP_07611617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881788|gb|EFN12924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 537

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 157/483 (32%), Gaps = 53/483 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   +        V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LAELADQLGVDAPEASEGAAVTGITHDSRAVRPGDVYAALAGARLHGADFAAQAADLGAV 76

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ +        +  +PV  VD+  G +  LA        A +  I ITG+ GKTTT  
Sbjct: 77  AVLTDPAGAERAAATGLPVLAVDNPRGRMGALAATIYGEPGADLLQIGITGTSGKTTTAY 136

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------------------VDVDFGI 164
           ++   L +  K    +      +   +   R+                      DV   +
Sbjct: 137 LIEGGLKAAAKHDGGLTGLIGTVETRIGDERIKSERTTPEATDLQALFAVMRERDVHSVV 196

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  SH   +  +   V   +AV   ++P H+   SG+E+   AKA++F    ++    
Sbjct: 197 MEV-SSHALVLGRVDGCV-FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFT-KARSRAGV 253

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +NYDD +   L  +        + +F    + D   R                G + E V
Sbjct: 254 INYDDEYGRRLIEQ----SEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAVGPNGESV 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N+   L  V  L         A        G   R         +  + +
Sbjct: 310 RAAAPLPGPFNVANALAAVVALAVAGIDPQTAADGIAAVPGVPGRLERVDVGQPYLAVVD 369

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISH 403
             +       A  SVL  +    +G+  AVLG     G          +   ++ Y+ + 
Sbjct: 370 YAH----KTDAVESVLRALRKVTDGKLHAVLG----CGGDRDRLKRGPMGAAVARYSDTA 421

Query: 404 VWLSG----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           V  S        LA+  A+              V   E          +    GD V+V 
Sbjct: 422 VLTSDNPRSEDPLAILAAMLAGAAEVPAHERGDVLVEEDRANAIAAAVARAEPGDTVIVA 481

Query: 450 -KS 451
            K 
Sbjct: 482 GKG 484


>gi|146310295|ref|YP_001175369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter sp. 638]
 gi|167017293|sp|A4W6I8|MURE_ENT38 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145317171|gb|ABP59318.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterobacter sp. 638]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  VP   +  + +DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVQNVPARALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDDATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT +++      + +         N  +G                              
Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVNPTENTTGSAVDVQHVLSGLAGQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVSALKFAASVFTNLSRDHLDYHGDMENYEAAKWLLYSTHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATDVDYHDSGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +   +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALDYPLSELVNTGARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCTGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADIP 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMMDAGHARVVEGRAEAVTNAIMQAKENDVVLLAGKG 467


>gi|253732622|ref|ZP_04866787.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|253729400|gb|EES98129.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus TCH130]
          Length = 494

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F  +   +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQNVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLYDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMVHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEVYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++T IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAAMIAVWSKGTSLETIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|23011653|ref|ZP_00051948.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 194

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/127 (37%), Positives = 75/127 (59%)

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           IDESYNANPAS++AA + L+ +    +GRRIAVLGDM E+G   ++ H +LAE ++   I
Sbjct: 53  IDESYNANPASIRAAFATLAGVETGPKGRRIAVLGDMKELGAAGEAHHRELAEAVAANGI 112

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             V+ +G  +  L +ALP ++    +     L   + ++L  GD V+VK SNS    +++
Sbjct: 113 DLVFTAGPLMAHLFEALPVAVRGTAAPKAAELTDAVLATLRPGDAVMVKGSNSMRMGQIV 172

Query: 462 NLLLEEF 468
             +   +
Sbjct: 173 EAVKARY 179


>gi|258423523|ref|ZP_05686413.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
 gi|257846224|gb|EEV70248.1| UDP-N-acetylMuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Staphylococcus aureus A9635]
          Length = 494

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/474 (15%), Positives = 148/474 (31%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +        ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLPANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F  +  ++  +    +      +  V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAKNIQESLQGVSFDFVTPFGTYPVKSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V      ++  IKA+    P EGR       L+      +   Y  
Sbjct: 298 GKFNISNIMAVMIAVWSKGTSLEMIIKAVENLEPVEGRL----EVLDPSLPIDLIIDYAH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               M   I  +           +  L  M   GE   +   ++  V       +V  + 
Sbjct: 354 TADGMNKLIDAVQPFVKQK----LIFLVGMA--GERDLTKTPEMGRVACRA--DYVIFTP 405

Query: 409 FHVLA------LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +           +    + H +Y   +               GD VV+ +S  
Sbjct: 406 DNPANDDPKMLTAELAKGATHQNYIEFDDRAEGIKHAIDIAEPGDTVVL-ASKG 458


>gi|15604990|ref|NP_219774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D/UW-3/CX]
 gi|76788991|ref|YP_328077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|237804614|ref|YP_002888768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311070|ref|ZP_05353640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276]
 gi|255317371|ref|ZP_05358617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 6276s]
 gi|8134575|sp|O84271|MURE_CHLTR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123607010|sp|Q3KM93|MURE_CHLTA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3328681|gb|AAC67862.1| UDP-N-acetylmuramoylalanylglutamyl DAP Ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76167521|gb|AAX50529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis A/HAR-13]
 gi|231272914|emb|CAX09825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296435785|gb|ADH17959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9768]
 gi|296436710|gb|ADH18880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11222]
 gi|296437645|gb|ADH19806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/11074]
 gi|297140144|gb|ADH96902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis G/9301]
 gi|297748399|gb|ADI50945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-EC]
 gi|297749279|gb|ADI51957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D-LC]
          Length = 483

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D +     LA            +I ITG+ GKTT   
Sbjct: 63  AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           ++   +    +    IG+  + +G    +          + +              + +S
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T I   HL     +EE  +AK + F  L + G   +N D  
Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +                 S+   + AD++  + K  S  S  ++  QG+        IG 
Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L +L +V          +     F                  +      Y   P
Sbjct: 295 HNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399
            ++     +L Q+ P  +GR I V G     G         L   +S +           
Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405

Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +         +      + H               S   D D+V+V  K 
Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455


>gi|284929330|ref|YP_003421852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
 gi|284809774|gb|ADB95471.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [cyanobacterium UCYN-A]
          Length = 497

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 83/484 (17%), Positives = 158/484 (32%), Gaps = 49/484 (10%)

Query: 1   MNPLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M  L+   +LL+ +               V GIS +S S   +E F  + G   DG +F 
Sbjct: 1   MVKLY---ELLKKVPSIIEIPTHKALNEEVKGISTNSHSCKQEEIFIGMPGTRVDGGEFW 57

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAI--- 113
             A++ GA  VV++           +  V  V+DV+   +++A A        I  I   
Sbjct: 58  QSAIKAGAVAVVISPQAAIKFPINDLHCVIIVEDVILTASEIATAFYSYPSEDIKMIGVT 117

Query: 114 --------TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-------LARMPV 158
                   T  +    T+     AL     +        +    P +          +  
Sbjct: 118 GTNGKTTTTHLIEYFLTECKKNTALIGTLYSRWNGFKQTSIHTTPFSPELQAQLSQAVID 177

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E+  SH      +      ++++ T +   HL     +E    AK  +F    
Sbjct: 178 KNEYCVIEV-SSHALVQGRVKGCG-FNVSIFTNLTQDHLDFHKNLENYFLAKQLLFSPEY 235

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +N DDS+ E L    +    K      ++  ADF         ++    ++  G
Sbjct: 236 LQGKAVVNIDDSYGERLIQ--YLGPQKVYSYSIENTMADFHTTNLNYKHDRIEGILKTPG 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + E     +G     N+L  +  +  L  D++T I  L  F    GR ++   +  Q  
Sbjct: 294 GNFEFQSPLVGKFNLSNLLAAIATLFHLNIDLETVINKLPQFPGVPGRVEKIEVSEVQDI 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++  +        ++L    P   G+ I V G     G         +   +  
Sbjct: 354 SVIVDYAHTPDSLE-----NLLKATRPFISGKVICVFG----CGGDRDRSKRSIMGKICA 404

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  L+  +            + + +P++ +                    GD V++
Sbjct: 405 KLADISVLTSDNPRTEEPEQILSDILEGVPKNANFWVISNRTEAIKTAILKADPGDGVLI 464

Query: 450 --KS 451
             K 
Sbjct: 465 VGKG 468


>gi|325288825|ref|YP_004265006.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964226|gb|ADY55005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 494

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 150/472 (31%), Gaps = 43/472 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +   I G +     Q  + G  +DSR + P + +  I G H DGHDF   AV+ GA
Sbjct: 9   TLQSISDQIAGATSRGNLQVGITGAKMDSRKVIPGDIYICIPGFHADGHDFAEAAVKAGA 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTK 123
             + V          L +P   V ++     K+A A       K  +I +TG+ GKTT  
Sbjct: 69  AALAVER-----YLPLDVPQIKVRNIRQTAGKIAAAVFGYPSQKLELIGVTGTNGKTTVT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LGM 169
            ++        K    IG+  + IG             A +   ++  + E      + +
Sbjct: 124 HLIESIAQENGKKTGLIGTLGSRIGNRGIPGQHTTPESAEIQDLLNQMVEEGVNTAVMEV 183

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S            R   A+ T +   HL     +EE  +AK  +F  +           +
Sbjct: 184 SSHALDLGRIVGCRFDTAIFTNLTQDHLDYHQSMEEYLAAKGLLFAQMSGEKPGQKAILN 243

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +             + ++G  K AD+Q  K     +  + ++  +    +V     G
Sbjct: 244 ADDQA-SEYLMTKTSCRVVTYGIEKKADYQAEKIVLSDKGIYFDLVYKKIREKVFFATPG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L           + +   KAL       GR +  R             + +  
Sbjct: 303 KFSVYNVLAAYAWALDNGYESEKVQKALCNLQGVPGRFQSIRKGQPFLVIIDYAHTPDG- 361

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   +VLS        R I V G     G         L    +     +V ++  
Sbjct: 362 ------LENVLSTAREITGRRLITVFG----CGGDRDRGKRPLMAEAASGWSDYVIVTSD 411

Query: 410 HV------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + D LP    V                +   +GD V++  K 
Sbjct: 412 NPRTEDPEKIIGDILPGMGKVDYEVIVDRRRAIHRACTMAGEGDTVLIAGKG 463


>gi|153949506|ref|YP_001402349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186894039|ref|YP_001871151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis PB1/+]
 gi|152961001|gb|ABS48462.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 31758]
 gi|186697065|gb|ACC87694.1| UDP-N-acetylmuramyl-tripeptide synthetase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
           +     +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     V T ++  HL     +    +AK  +F   +    I    DD     L     
Sbjct: 196 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255

Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +    +  K  N  +    K       + +         E+    +G     N+L+ 
Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +    +   + A     P  GR + +              + +A           
Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L+    H  G+   V G     G         L   ++      V ++  +         
Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L  +  V                  + DVV++  K 
Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|51595033|ref|YP_069224.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|51588315|emb|CAH19923.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
          Length = 490

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 11  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
           +     +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ 
Sbjct: 71  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     V T ++  HL     +    +AK  +F   +    I    DD     L     
Sbjct: 191 ALPFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 250

Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +    +  K  N  +    K       + +         E+    +G     N+L+ 
Sbjct: 251 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +    +   + A     P  GR + +              + +A           
Sbjct: 311 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 363

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L+    H  G+   V G     G         L   ++      V ++  +         
Sbjct: 364 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L  +  V                  + DVV++  K 
Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462


>gi|317046892|ref|YP_004114540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
 gi|316948509|gb|ADU67984.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pantoea sp. At-9b]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/477 (14%), Positives = 129/477 (27%), Gaps = 45/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSRS A  + F A+ G H DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPARPLRDMTLDSRSAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A  G +     +PV  +  +   L+ LA     +    +  I  +     
Sbjct: 61  AAVIAEAEGEAIDGDIREIHGVPVIYLAQLPQRLSALAGRFYQQPAEKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     IA  +               G+   L          +                 
Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVATENTTGSAVDVQHVLHDLVGQGATLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     + +   A   +     + G   +
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDM-QSYEAAKWLLFSEHQVGAAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       AK       T+    +       L+            +       +   
Sbjct: 240 NADDEVGRRWLAKLPDAVAVTMADNLQPGCHGRWLKATAVNYHDGGAHICFSSSWGDGEF 299

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                       + L + ++L+ D        S        G+    +       ++D +
Sbjct: 300 DSRLMGAFNVSNLLLALATLLSLDYPLDALVSSATQLLPVTGRMEVFSAPDKPTVVVDYA 359

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          L     H +G+   + G     G         L   ++      V 
Sbjct: 360 HTPDALE-----KALEAARLHCKGQLWCLFG----CGGDRDKGKRPLMGAIAEQFADVVV 410

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   L                          D+V+V  K 
Sbjct: 411 ITDDNPRSEDPQAIVNDILTGLLDPGRARVVAGRAQAVTNAIMQAKAEDIVLVAGKG 467


>gi|6525303|gb|AAD29718.2|AF141867_1 probable UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Vibrio cholerae]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/456 (16%), Positives = 144/456 (31%), Gaps = 42/456 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG----S 80
             +  + +DSR I   + F AI+G   DG  FI  A+ +GA LV+   D     G     
Sbjct: 25  LVITHLELDSRLIKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 84

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS------SIK 134
             +PV  + ++   L++LA          +I +TG+ GKTT  +++   L       ++ 
Sbjct: 85  AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 144

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVD--------FGIFELGMSHLGEIRFLTHLVRPHI 186
            T               T   + +                L  S  G ++     +    
Sbjct: 145 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 204

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V + ++  HL     +E  A+AK  +F        I    D    + +K    A+G+  
Sbjct: 205 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSL 264

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +     ++    +  +         +  +      E+    IG   A N+L+ L  +  L
Sbjct: 265 VTKPNTAQAIWAR--EVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 322

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +    +       P  GR + ++             + +A           L  +  H
Sbjct: 323 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDA-------LEKALRALRVH 375

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             G+  A++G     G         +   ++      V L+  +            +   
Sbjct: 376 CAGQLWAIVG----CGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAG 431

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L      H          +        D++++  K 
Sbjct: 432 LTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKG 467


>gi|170288509|ref|YP_001738747.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
 gi|170176012|gb|ACB09064.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotoga sp. RQ2]
          Length = 490

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 98/483 (20%), Positives = 169/483 (34%), Gaps = 53/483 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DL+  ++           + G+S  S  +   + F   +G  +D H+ I   ++KGA
Sbjct: 9   NLKDLILEVRA-----PYDLEITGVSNHSSKVKKGDLFICRRGEKFDSHEIIPEVMEKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTK 123
             VVV  ++      L  P   V D      K+A          ++    TG+ GKTTT 
Sbjct: 64  VAVVVEKEI-----DLDFPHIQVFDSRYFEAKVASLFFEDPWKDVLTFGVTGTNGKTTTT 118

Query: 124 EMLTIALSSIKKT---------YACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELGM 169
            M+   L+S+ +               SY + I  P  +      +   +     F L +
Sbjct: 119 MMIYHMLTSLGERGSVLTTAVKRILGSSYYDDITTPDAITILSAMKENKEGGGKFFALEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   LN   
Sbjct: 179 SSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGVAVLN--- 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              E L    +        +FG SKNAD++L   +   E +   ++     ++V    IG
Sbjct: 236 ---ESLADAFNRKS--RKITFGTSKNADYRLGNIEVNWEGTQFVLETPDGLLKVFTKAIG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N    +  +  L  D      +L  F   EGR +  R A   G   ++D +++ +
Sbjct: 291 DFNAYNAAAAIAALHQLGYDPKELASSLETFTGVEGRFEVVRGAKKIGLNVVVDFAHSPD 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
                    +L  +    +GR I V G     G  S      +   ++    + V L+  
Sbjct: 351 ALE-----KLLKNVRKISQGRVIVVFGA----GGNSDRGKRPMMSEVASKLANVVILTTD 401

Query: 408 ---GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              G      +  L   + +                  +    GD VV+        Y++
Sbjct: 402 DPRGEDPEQIMEDLIKGIDKRKPYLVLFDRREAIETALTIANRGDSVVIAG-RGHERYQI 460

Query: 461 INL 463
           I+ 
Sbjct: 461 IDE 463


>gi|329895274|ref|ZP_08270916.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
 gi|328922396|gb|EGG29739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC3088]
          Length = 487

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 85/470 (18%), Positives = 157/470 (33%), Gaps = 45/470 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            + GI  DSR+ +    F A+ G  + G DF+  AV +GA 
Sbjct: 8   LSELCADLGYCVR----DAKITGIVTDSRAASLGSLFIAVPGHTHRGVDFVSDAVARGAS 63

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++ + +M        I +  V DV      +A+      + +   +A+TG+ GKT+T +
Sbjct: 64  GIIADEEM---NLPDHIGLVVVSDVRAISGIVAMRFFETDKQELRTLAVTGTNGKTSTVQ 120

Query: 125 MLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMS 170
           +L   L  + +                  S N    V      +       +    L  S
Sbjct: 121 LLAQLLGELDQAAATVGTLGFQLPTGFSPSSNTTPDVVEIHRFLASAAAQNVRWAALEAS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    A IT I   HL     + E  +AKA+I   L     + L+ D+ 
Sbjct: 181 SHGLVQHRLTGLNITTAAITNITQDHLDYHGTMTEYIAAKAQIL-ALSGLRAVVLDLDNP 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ +  A      ++ G+  +A   +   +  ++ +   V+L G    +    +G 
Sbjct: 240 EVRALRPQVPANVQVLGFTLGEVADA-DAVVVAQYDADGTTATVRLDGFEYRLRLPLVGE 298

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N L  L ++       +  + A        GR    R  L+      +D ++  + 
Sbjct: 299 FYLRNTLTALFMLRAEGLRFEDLVAAAGRLRGVPGR--LERVGLDSDVAVYVDYAHTPDA 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +      VL  + P  +     V G     G         L    +      V L+  +
Sbjct: 357 IA-----RVLQVLRPTVKNDLWVVFG----CGGDRDKSKRPLMGRAAAEGADWVVLTSDN 407

Query: 411 VLA-----LKDALPRSI-HVH-YSETMDGLFLFIQSSLVDGDVVVV--KS 451
             A     + D +     H     E           +   GD +V+  K 
Sbjct: 408 PRAEDPSKILDDIQVGCAHARLVIEDRAVAIESAIMAASPGDTLVIAGKG 457


>gi|307244124|ref|ZP_07526242.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
 gi|306492495|gb|EFM64530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptostreptococcus stomatis DSM 17678]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 143/480 (29%), Gaps = 51/480 (10%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL   + I    +  + +  ++ I  DSR       F AIKG   DGH ++  A 
Sbjct: 1   MKLSELLTGLEYISNRDMDQLKECEIDNICYDSRKARKNGIFVAIKGETVDGHKYVDSAY 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG---- 115
           QKG    VVN +M     +    +  VDD    L+ ++            +I +TG    
Sbjct: 61  QKGCRAFVVNDNMD---LAEDAIMIIVDDSRNCLSHISANFFGNPSKELKVIGVTGTKGK 117

Query: 116 -----------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                      +     T  + T  +         I +      +     R  VD     
Sbjct: 118 TTITNYLKSVLTKSGLNTGVIGTNGVFYNDYEGKTINTTPESYEL-HKTIREMVDAGVKC 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S  G +    + V   I + T ++P H+        E+    K+ +        +
Sbjct: 177 VAMEVSSGGLMMERVNHVDFDIGIYTNLSPDHIGPKEHPTFEDYRDCKSRL-------FS 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  +   +  +   +         I +F   K +D++         ++ + V  +     
Sbjct: 230 LCRHGIINIDDDHASYMIDKATCDIETFSIKKPSDYRAEDISLTRTKTSLGVDFKYIRDG 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                      +  +     V      +      +           R     +    T++
Sbjct: 290 QASQTHIASPGEFSVYNALAVIATANYLGIDKDKMLSALATAQVDGRVEVIPSIPDITVV 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +   +      +VL  +  +   R I V G +   G  S     +L +V +     
Sbjct: 350 LDYAHNGVS----LENVLETLLKYKPRRLICVFGSI---GGRSVLRRKELGDVAAKLCDI 402

Query: 403 HVWLS----GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  +        + + + +  S       V          L        GD+V+V  K 
Sbjct: 403 SILTTDNPDDEDPMNIINDIEESFVDSKCQVLKIVDRSQAILKGIEIAQPGDMVIVAGKG 462


>gi|306820475|ref|ZP_07454111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551550|gb|EFM39505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 491

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 148/462 (32%), Gaps = 52/462 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-- 81
              +  I  DS+    +  F A+ G   DGH +I +A   GA + V++ +          
Sbjct: 20  DLEIEDIVYDSKKAVEKTLFTALIGMTSDGHKYIENAYSSGARVFVISREEFLQEKENVE 79

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
              +     V+D   AL  ++           TI+ ITG+ GKTT    +   L +   +
Sbjct: 80  IIQNSTFILVEDTRVALATMSAEFFGHPSKELTIVGITGTKGKTTVSGYIKSVLDNSDIS 139

Query: 137 YACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              IG+   +                      +  VD    +  + +S  G +    H +
Sbjct: 140 CGVIGTNGIYFANQYFKTVNTTPESYEIQKYMKKMVDNGVKVLAMEVSSGGIMMNRVHGI 199

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
               A+ T ++  H+       E      E +   +        Y     +   +K    
Sbjct: 200 EFDYAIFTNLSHDHIG------EKEHPTFEHYRECKSMLFAMSKYSIINIDDENSKVMIE 253

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             K   ++    ++DFQ +     S  S M    +    + V +  G     N L T+ +
Sbjct: 254 KSKDYKTYSIDSSSDFQAKDIIYPSNISDMRTYFEVNEKKYVVNSFGKFGVYNALCTIML 313

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L     +    L           R +         +I + Y  N  S++  +  + +
Sbjct: 314 CEQLGLSYQSIYTGLEK----AHVKGRLQVIDGFTDIKVIID-YAHNEVSLENVLQTVKE 368

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           + P      + VL     +G  SQ+   +LA V S Y    + ++       +   + D 
Sbjct: 369 LKPKR----LIVL--FGSVGTRSQNRREELATVASKY-CDVIIVTSDNPDTENPQKIIDE 421

Query: 418 L------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +       +  + +                  GDV+V+  K 
Sbjct: 422 IVSHISQDKKKYTYCYADRAVAIQKAIEMSQKGDVIVLAGKG 463


>gi|329298854|ref|ZP_08256190.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plautia stali symbiont]
          Length = 495

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 45/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +       +  +++DSR+ A  + F A+ G H DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGALARPLRDMTLDSRAAAAGDLFIAVAGHHADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  AS G +     +PV  +  +   L+ LA     +   K  +I +TG+ GK
Sbjct: 61  AAVIAEAEGEASDGDIREMHGVPVIYLAQLPQRLSALAGRFYQQPADKLKLIGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFG-------------IF 165
           TTT +++    + + +T        N   G  +                         + 
Sbjct: 121 TTTTQLIAQWANLLGETGAVMGTVGNGLYGQLVPSENTTGSAVDVQHILHDLVGQGATVA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     ++   SAK  +F   +    I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMQGYESAKWLLFSEHQVGEAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+     L+    A+ +    +        +         +                 
Sbjct: 241 ADDEVGRRWLEKLPDAVAVTLSNNLQPGCRGRWLQATVIDYHDGGAHVQFSSSWGNGEFD 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      + L+      +        + A +          R          T++ + 
Sbjct: 301 SRLMGAFNVSNLLLALATLLTLDYPLDTLVASASQLQP--VCGRMEVFTAVHKPTVVVDY 358

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A        L     H +G+   V G     G         L   ++      V 
Sbjct: 359 AHTPDA----LEKALEAARLHCKGQLWCVFG----CGGDRDKGKRPLMGAIAEQFADIVV 410

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   L                          D+V+V  K 
Sbjct: 411 ITDDNPRSEEPTAIINDILTGLLDPGRACVIAGRAQAVTHAVMQASADDIVLVAGKG 467


>gi|157963627|ref|YP_001503661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella pealeana ATCC 700345]
 gi|157848627|gb|ABV89126.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shewanella pealeana ATCC
           700345]
          Length = 488

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 82/452 (18%), Positives = 145/452 (32%), Gaps = 43/452 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVF 86
           I++DSR++     F AI G   DG  FI  A ++GA   +V+TD     G   +      
Sbjct: 22  ITLDSRAVQAGYLFVAIPGYQVDGRKFIAAAFERGASAALVHTDSPEKHGTVVNDGGLQI 81

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKT-TTKEMLTIALSSIKKTYACIGSY 143
               +   ++ LA  A    +S+  I+ +TG+ GKT  T+ +  + L   K+T       
Sbjct: 82  LFFQLNRQISALAAQAYPLSQSRPQIVGVTGTNGKTSVTQLIAQLQLLQSKQTAVMGTLG 141

Query: 144 NNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHLVRPHIAVIT 190
           N   G  +       D    I               + +S  G ++     V   +AV T
Sbjct: 142 NGLWGELVDSGNTTADPITLIKQLQGVEQRGADTCAMEVSSHGLVQGRVEAVPFDVAVFT 201

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +EE   AK  +F+     G +    D    E L     A      +S 
Sbjct: 202 NLSRDHLDFHHTMEEYGIAKKRLFQFANLRGGLINIDDVVGREWLAD--LASDKLLGFSV 259

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                AD   +            +       ++    +G     N++  LG + +L  D+
Sbjct: 260 KGDSTADIYTKDNHFHDGGVSCTLVWPTGEAQLNSPLLGDFNLSNLVAALGALYLLGEDM 319

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            T +       P  GR +R+              + +A           L  +  H +G+
Sbjct: 320 HTLVALAPKLEPVAGRMERFTSKDGVTLVVDYAHTPDA-------IEQALKALRVHCKGQ 372

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421
              + G     G         +    +      V ++  +            +   L   
Sbjct: 373 LWCLFG----CGGDRDKGKRPMMAASAEQFADRVMVTSDNCRSEDPNAIISDILAGLQHP 428

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          I +    GD+V++  K 
Sbjct: 429 QQALSQVERQVAIKEIVAQAASGDMVLLAGKG 460


>gi|15988379|pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
 gi|15988380|pdb|1E8C|B Chain B, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide
           Synthetase From E. Coli
          Length = 498

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 143/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +   ++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 4   NLRDLL----APWVPDAPSRALREXTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 59

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 60  AAIIAEAKDEATDGEIREXHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 119

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------- 167
           TTT ++L      + + +       N  +G  +              EL           
Sbjct: 120 TTTTQLLAQWSQLLGEISAVXGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 179

Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +S  G ++     ++   +V T ++  HL      E   +A   ++        I  
Sbjct: 180 AXEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDXEHYEAAXWLLYSEHHCGQAIIN 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 240 ADDEVGRRWLAKLPDAVAVSXEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 300 SHLXGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRXEVFTAPGKPTVVVDYAH 359

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 360 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLXGAIAEEFADVA 408

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +      + H    E              + DVV+V  K 
Sbjct: 409 VVTDDNPRTEEPRAIINDILAGXLDAGHAKVXEGRAEAVTCAVXQAKENDVVLVAGKG 466


>gi|255505595|ref|ZP_05347097.3| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
 gi|255266835|gb|EET60040.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bryantella formatexigens DSM 14469]
          Length = 524

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 86/478 (17%), Positives = 154/478 (32%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +       V  I  DSR +     FF IKG   DGH +     QKG
Sbjct: 38  MKLTKLLERVEYECVQGNTDIEVTDIVNDSRKVREGCLFFCIKGAVADGHKYAAEVAQKG 97

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           AG+               + V  V D   A+  +A A       K  +I ITG+ GKTTT
Sbjct: 98  AGV---LVVQDDVQVPGDVTVIKVADSRYAMALIAAAWYGHPAEKLKVIGITGTKGKTTT 154

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L +       IG+    IG                            D  + E
Sbjct: 155 TYMIKSILEAAGHKVGLIGTIEAIIGDKVIPASNTTPESTTIQKYFAEMAEAGCDCVVME 214

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S  G +   T      I + T + P H+        E+    K              
Sbjct: 215 V--SSQGLMLHRTVGFTFEIGIFTNLEPDHIGPAEHENFEDYLRCK-------AMLFKQC 265

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +   +  +             + ++G  + ADF+  + +  S+  ++ +          
Sbjct: 266 RHGIFNADDAHLEAILEGHTCDVETYGFGEKADFRASEAQLVSKPGYLGIAYHVTGKRNF 325

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              I      ++  +L  +++         K ++     + +G+     ++  F  +ID 
Sbjct: 326 FVEIDIPGKFSIYNSLAAIAVCDYFGVEEEKMIAALKKAKVKGRIEMIKVSDEFTLMIDY 385

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++NA      +  S+L+ +  +  GR + V G     G  S++   ++ EV   Y    +
Sbjct: 386 AHNA-----MSLESLLTTLKEYNPGRLVCVFG---CGGNRSRARRFEMGEVSGKYADFTI 437

Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             S         A+   +   I                  +       GDV+V+  K 
Sbjct: 438 ITSDNPRYEEPEAIIADIETGIAKTDGKYIKITDRKEAIAYAIHHGQPGDVIVLAGKG 495


>gi|117928213|ref|YP_872764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
 gi|117648676|gb|ABK52778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidothermus cellulolyticus 11B]
          Length = 522

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 139/476 (29%), Gaps = 52/476 (10%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G + G      + G++ DSR + P + F A+ G H  G  ++  AV  GA  V+ +    
Sbjct: 28  GPAAGSTAGILICGVTHDSRRVQPGDLFAALPGAHTHGARYVADAVTAGAVAVLTD-PAG 86

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSI 133
           AS+ +  +P+    D    L  +A A        ++   +TG+ GKTTT   L   L + 
Sbjct: 87  ASLINREVPLLICADPRKTLGPVAAAIYGHPARALVTLGVTGTNGKTTTVFFLDAGLRAA 146

Query: 134 KKTYACIGSYNNHIG---VPLTLA-----------RMPVDVDFGIFELGMSHLGEIRFLT 179
                 +G+    +G   VP                   D       + +S         
Sbjct: 147 GHRTGLLGTVMTRLGERTVPSARTTPEAPDIQALLARMRDDGITAAAMEVSSHALALHRV 206

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                     T ++  HL     +E    A A+    +   K   +  +           
Sbjct: 207 DGTGFACVGFTNLSHDHLDFHGDMENYFAAKARLFRPDFAPKAVIVVDDEYGRRLADTAP 266

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQ-------CSEQSWMEVQLQGKSMEVVHHGIGY 290
            +              +  D+++   +                V      +E+     G 
Sbjct: 267 IAVRTVSGRPEHLPPDRRPDWRVVAVRAAAAVSPTRPAGQVATVAGPIGEVELSLQLPGR 326

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L+ L I+  +   V+ A   +       GR +                      
Sbjct: 327 FNLTNALLALAILVEVGIPVEAARAGIGDLAGVPGRLELVDAGQPFAVLVDYA------- 379

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                A++ +++      GR I V+G     G+   S    +    +      ++ S   
Sbjct: 380 -HTPEAVATVAREVRPDRGRLIIVIG---CGGDRDPSKRPAMGAAAAELADLAIFTSDNP 435

Query: 409 --FHVLALKDALPRSIHVHYSE---------TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  A+   +    ++                    +   GDVV++  K 
Sbjct: 436 RSEDPEEIVAAMLTGVPAVTADRRAEIRVELDRHEAIKDAIQAARPGDVVLIAGKG 491


>gi|65317674|ref|ZP_00390633.1| COG0770: UDP-N-acetylmuramyl pentapeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 247

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG ++  D+        +  +      + +++      +G H   N L ++ I      
Sbjct: 34  TFGDARANDYYPTTVTLQATGT-HFKMNREENISFYLPVLGKHNVYNTLASMAIAKYFGV 92

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +   + L      +  G R          T+I+++YNA+P +M+AA  +++ +    +
Sbjct: 93  TWEEMKEGL---VTLQMTGMRMEIVKTDSGLTIINDAYNASPTAMEAAFHLMNGLDGFSK 149

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP---RSIHVH 425
              I VLGDM E+G+    FH ++ +++    IS+V+  G     + +       +  V 
Sbjct: 150 K--IVVLGDMLELGDQEVQFHYEVGKLIDPAKISYVFTYGKLGAQIAEGAKINFPNERVK 207

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +  + L   +Q+ +   DVV+VK+S       +I +L 
Sbjct: 208 AYDNKEELVKELQAVVDTKDVVLVKASRGMKLEEVITMLK 247


>gi|309796075|ref|ZP_07690487.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
 gi|308120317|gb|EFO57579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 145-7]
          Length = 471

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|206577734|ref|YP_002240443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
 gi|206566792|gb|ACI08568.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Klebsiella pneumoniae 342]
          Length = 495

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 65/478 (13%), Positives = 140/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F A++G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERILREMTLDSRVAASCDLFIAVQGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             ++      A  G +     +PV  +  +   L+ LA     +    +  +  +     
Sbjct: 61  AAIIAEAQGEAEDGEIREMHGVPVIYLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKLLGETSAVMGTVGNGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALQFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +          + ++      + E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATAVNYHDSGATIQFDSSWGNGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCSGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 467


>gi|318040403|ref|ZP_07972359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CB0101]
          Length = 506

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 137/479 (28%), Gaps = 40/479 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+ +       +    V  +S DSR + P   F  + G   DG  F   A++ GA 
Sbjct: 5   LHPLLRQVGLAVPPGLANADVTSVSCDSRRVGPGTVFVGLPGAQVDGGVFWPQAIEAGAV 64

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVL-GALNKLAVAARLRSKATIIAI------TGSVG 118
           L V+      +       PV  V D +      LA     +    +  I        +  
Sbjct: 65  LAVIGRAAAEACPPADQDPVLVVTDPVARWAGMLAAEFWQQPSQRLHLIGVTGTNGKTTT 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------DVDFGIFELG 168
               + +     +        +  +  H                      +    +  + 
Sbjct: 125 THLIEHLAASCGTPSALFGTLVNRWPGHSVTAQHTTAFADVLQGQLAQAAEAGAQVGAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS-----AKAEIFEGLEKTGTI 223
           +S     +      R   AV T +   HL     ++           A   E  E   T 
Sbjct: 185 VSSHALDQQRVSGCRFAGAVFTNLTQDHLDYHPSMQAYFEAKASLFSAAFLEMHEGQATA 244

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD + + L  +    G     S  +S  A+ ++ + +  SE     +     S   
Sbjct: 245 VVNVDDPWGQQLAERL--GGHAWRCSLEESSEAELRMEQLQFSSEGVKGVLVSPHGSGPF 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N L  +G +      +   ++ L+ F    GR +R      +     + 
Sbjct: 303 QSPLLGRFNLMNQLQAVGALLQQGLPLANLLQGLASFRGVPGRMERVGVGRAECCEGSLP 362

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
                   +     S L    P  +G+ I V G     G         L   ++      
Sbjct: 363 AVLVDYAHTPDGLESALKACRPFAQGQLICVFG----CGGDRDRTKRPLMGSIAARLADQ 418

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   +P    V            + ++    D+V++  K 
Sbjct: 419 VVVTSDNPRTEDPQQILQDVMQGIPEGTAVQVEADRGRAIAAVVAAAQPADLVLIAGKG 477


>gi|226360402|ref|YP_002778180.1| UDP-N-acetylmuramoylalanyl-D-glutamate- -2,6-diaminopimelate ligase
           [Rhodococcus opacus B4]
 gi|226238887|dbj|BAH49235.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Rhodococcus opacus B4]
          Length = 496

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 142/475 (29%), Gaps = 48/475 (10%)

Query: 7   FHDLLQAIQ-GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++L+ +    ++       V GI+ DSR +   + + A+ G H  G +F   A  +GA
Sbjct: 14  LPEVLRRLGRSATLCGPGDAAVTGINQDSRLVRAGDMYAALPGRHRHGIEFAAEAASRGA 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
             ++ +        S  +P   V D    L  LA            +  +TG+ GKT+T 
Sbjct: 74  VAMLSDR------TSDVLPTIVVGDPRRILGPLASWMYGDPSEAFDVYGVTGTNGKTSTV 127

Query: 124 EMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-------------ELGM 169
            +L   L +       +        G   +  R   +                    + +
Sbjct: 128 YLLDAGLRAAGAVAGMMTGITVRGPGGSRSATRTTPEACELQQTLAAFAEQRIGAVAMEV 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G            + V T +A  HL     ++   +AKA +F+         +  DD
Sbjct: 188 SSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFD-PRHCAAAAIGIDD 246

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            F   L A    + +  +    ++  AD            +   +   G  + V    +G
Sbjct: 247 EFGRRLAA---TVTVPRLTFSSRTTAADIHASGVHADEGGTSFTLHGAGDRISVRLRLLG 303

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  +  + +   D   AI  +       GR +          F     +    
Sbjct: 304 VHQVDNALAAIAALVVRGVDPGAAIAGIEDLDTVPGRLEAVDAGQPFFAFVDYMHNTAG- 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406
                    +   +     GR IAV+G     GE        L    + +  + V     
Sbjct: 363 ------QRRLFPYLRSLTAGRVIAVVGA---TGERDPGKRAPLGATAARFADAVVVTDES 413

Query: 407 -SGFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   L++ + R         V              +    GDVVVV     
Sbjct: 414 PYSEDAQRLREDVARGARSGGNADVLVVPDRTEAIAAAVTLAGPGDVVVVAG-RG 467


>gi|261345649|ref|ZP_05973293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
 gi|282566131|gb|EFB71666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Providencia rustigianii DSM 4541]
          Length = 495

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+KG   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 26  TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVAAIIAEAQGEAEEGEIRVVHGVPVI 85

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            + D+   L+ LA     +   K  ++ +TG+ GKTTT +++      + + +       
Sbjct: 86  YLHDLNNRLSALAGEFYHQPSSKMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                 E             + +S  G I+     +    AV T
Sbjct: 146 NGLLGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLIQGRVAALNFDAAVFT 205

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +F   +    I    DD   + L     A  +      
Sbjct: 206 NLSRDHLDYHGDMENYEAAKWLLFSTHQTKTQIINADDDVGLKWLHRLPQACAVTMENRI 265

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            K+    + +        + + +               +G     N+L+ +  + ++   
Sbjct: 266 PKNWQGSWLKATNVDYHDKGATIHFASSWGEGSFESPLMGAFNVSNLLLAMATLLMMDYP 325

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  + A     P  GR + +              + +A           L     H +G
Sbjct: 326 LDKLLAATDFLMPVCGRMEVFSTEGKPTVVVDYAHTPDA-------LEKALLAARLHCKG 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L    +      V ++  +            +   +  
Sbjct: 379 KLWCVFG----CGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEEPLDIINDIMAGILD 434

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S  V                    DV++V  K 
Sbjct: 435 SSRVLAIPGRPEAVTSTILQAQPDDVILVAGKG 467


>gi|90423692|ref|YP_532062.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
 gi|90105706|gb|ABD87743.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB18]
          Length = 511

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 139/456 (30%), Gaps = 34/456 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                 +  V G++ DSR++   E FFA+ G + DG  +I  A+  GA  VV        
Sbjct: 39  IAAEASEIEVRGVASDSRAVLSGEVFFALAGANTDGARYIDQAIANGAVAVVGEQ---FP 95

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                + +  V +   AL   A     R  ATI A+TG+ GKT+           +    
Sbjct: 96  DSDHRVALVRVANPRRALALAAARMFPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGFAA 155

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVR 183
           A IG+             +       +                L  S  G  +F    VR
Sbjct: 156 ASIGTIGLVTPQRSVYGSLTTPDPIALHREIDQIAGEGVTHLALEASSHGLDQFRLDGVR 215

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A  T ++  H+     +    +AK  +F  L   G   +   D         +    
Sbjct: 216 VSAAGFTNLSRDHMDYHPDVAHYLAAKLRLFTDLVIDGGAAVISADHEHSEAVIAAARAR 275

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G++ N    +R      +     + ++ +  E           Q     +   
Sbjct: 276 GLRLITVGRNGNRQDGIRLIGATIDGFAQRLTVEFRGRERGLRLPLVGEFQIENALVAAG 335

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             +    D      ++ H +  +G+        G    +D ++  +  +       L  +
Sbjct: 336 LAIGTGGDAEQVFAALQHLEGAKGRLELVGDRNGAPIFVDYAHKPDALA-----KALQAL 390

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
            P+ + + I V G     G    +    L   ++      V ++  +  +          
Sbjct: 391 RPYAKRKLIVVFGA----GGDRDAGKRPLMGAIATGLADSVIVTDDNPRSEDPAAIRAAI 446

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +                  +L  GD +++  K 
Sbjct: 447 MAAAGGAVEIGDRAEAIRTAIGALQSGDALLIAGKG 482


>gi|163790621|ref|ZP_02185049.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
 gi|159874069|gb|EDP68145.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Carnobacterium sp. AT7]
          Length = 507

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 164/476 (34%), Gaps = 50/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               D+L+   GH     P      V GI+ +S  + P   F AIKG   DG+ +   A+
Sbjct: 1   MKITDILKM--GHLNYSEPLNQSRNVKGITDNSNEVRPGYIFIAIKGHKEDGNIYTQQAI 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGK 119
             GA L++   D      +L++P   V +    L ++A            +I ITG+ GK
Sbjct: 59  LNGAILIIGEDDFT----NLTVPYLKVKNARKTLGQVAKKFYKDPSKNKIMIGITGTNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVDVDFGIFELG 168
           TT    +   L     + + IG+  N I               T+ ++       +  + 
Sbjct: 115 TTIGFFIKQLLEKQGYSVSSIGTIYNEINGKRIQSVNTTPNAKTINQLLTASTDQVVVME 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G  +     ++   A+   +   HL     +EE    KA +FE L+  GT  +NY+
Sbjct: 175 VSSQGLAQNRLEGIQFDYALFNNLQHDHLDYHGTMEEYFECKALLFEKLKLDGTAIINYN 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + L  +  A G   + + G+      Q+   +  +    + V+ + K   +     
Sbjct: 235 DRWGKKLTERLTAQGK-KVITVGEEPTNQVQILAKELNN----VSVRYKNKEYNLRTPLP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N+ M+  +   L    +     +S F    GR + +  A           + +A
Sbjct: 290 GVHNLENLTMSSCVAHELEVPYEQVTTYMSQFSGIAGRFEIFHLANKVTVVVDYAHTPDA 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              S+  AIS  ++      G            G   +S    + E +   +   +    
Sbjct: 350 LATSINTAISNGAKRIITVFGFA----------GNRDESKRKAMLENVCRLSTYAILTVT 399

Query: 409 FHVLALKDAL-------PRSIHVH----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +  D L        +   V                       GD V++  K 
Sbjct: 400 ELFGSTIDNLYSDYISIQKECQVEEKTSIIMDRTLAIQKAIWEAQSGDWVLLLGKG 455


>gi|188026237|ref|ZP_02961399.2| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
 gi|188022181|gb|EDU60221.1| hypothetical protein PROSTU_03427 [Providencia stuartii ATCC 25827]
          Length = 471

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/453 (16%), Positives = 147/453 (32%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F AIKG   DG  +I  A+ +G   VV      A+ G +     +PV 
Sbjct: 2   TLDSRKAAAGDLFIAIKGHQSDGRHYISQAIAQGVAAVVAEAHGEAAEGEIRYIHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            ++D+   L+ LA A       K  ++ +TG+ GKTTT +++      + + +       
Sbjct: 62  YLNDLNSRLSALAGAFYQHPVEKMKLVGVTGTNGKTTTTQLIAQWAQGLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                 E             + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVAPSENTTGSAVDIQVELTQLLKQKATLTAMEVSSHGLVQGRVAALSFDAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  +F   +    I    DD   + L+    A  +      
Sbjct: 182 NLSRDHLDYHGDMESYEAAKWLLFSTHQTKAQIINADDDVGLKWLQRLPQACAVSMEQRI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            +     + Q    +     + ++      +  +    +G     N+L+ +  +  +   
Sbjct: 242 PEQWQGPWLQATAVEYHDRGATIQFTSSWGNGTLESPLMGAFNVSNLLLAMATLLTMDYS 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  ++A S   P  GR + +              + +A           L+    H +G
Sbjct: 302 LEQLLEASSSLSPVCGRMEVFSAPNKPTVVVDYAHTPDA-------LEKALAAARLHCKG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L    +      V ++  +            +   +  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGAAAEEWADKVVITDDNPRSEEPLDIINDIMAGILD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S  V                    DV+V+  K 
Sbjct: 411 SSRVLAIPGRAEAVTSSIMQANADDVIVIAGKG 443


>gi|22127505|ref|NP_670928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis KIM 10]
 gi|45443366|ref|NP_994905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|108809542|ref|YP_653458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|108810581|ref|YP_646348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|145600347|ref|YP_001164423.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162419817|ref|YP_001607300.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165928210|ref|ZP_02224042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937753|ref|ZP_02226314.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008992|ref|ZP_02229890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212163|ref|ZP_02238198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401238|ref|ZP_02306738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421898|ref|ZP_02313651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167426477|ref|ZP_02318230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229837059|ref|ZP_04457224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229840438|ref|ZP_04460597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843020|ref|ZP_04463170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229900773|ref|ZP_04515897.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270487857|ref|ZP_06204931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294502638|ref|YP_003566700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|21960603|gb|AAM87179.1|AE013965_6 meso-diaminopimelate-adding enzyme [Yersinia pestis KIM 10]
 gi|45438235|gb|AAS63782.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis biovar Microtus str. 91001]
 gi|108774229|gb|ABG16748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Nepal516]
 gi|108781455|gb|ABG15513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Antiqua]
 gi|145212043|gb|ABP41450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Pestoides F]
 gi|162352632|gb|ABX86580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis Angola]
 gi|165914165|gb|EDR32781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919821|gb|EDR37122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992331|gb|EDR44632.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206909|gb|EDR51389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960035|gb|EDR56056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167049263|gb|EDR60671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167054575|gb|EDR64383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682112|gb|EEO78204.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229689896|gb|EEO81955.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696804|gb|EEO86851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706002|gb|EEO92011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262360668|gb|ACY57389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D106004]
 gi|270336361|gb|EFA47138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294353097|gb|ADE63438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis Z176003]
 gi|320016916|gb|ADW00488.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate
           ligase [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 495

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
           +     +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ 
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 135

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 136 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 195

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     V T ++  HL     +    +AK  +F   +    I    DD     L     
Sbjct: 196 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 255

Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +    +  K  N  +    K       + +         E+    +G     N+L+ 
Sbjct: 256 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +    +   + A     P  GR + +              + +A           
Sbjct: 316 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L+    H  G+   V G     G         L   ++      V ++  +         
Sbjct: 369 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 424

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L  +  V                  + DVV++  K 
Sbjct: 425 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 467


>gi|167469519|ref|ZP_02334223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis FV-1]
          Length = 478

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 145/461 (31%), Gaps = 43/461 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S+ 
Sbjct: 1   PERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVSVA 60

Query: 82  ---SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KK 135
               +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ + 
Sbjct: 61  EIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALGET 120

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLV 182
           +       N  +G  +                            + +S  G I+     +
Sbjct: 121 SAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVAAL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
                V T ++  HL     +    +AK  +F   +    I    DD     L     A+
Sbjct: 181 SFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQAV 240

Query: 243 GIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +    +  K  N  +    K       + +         E+    +G     N+L+ L 
Sbjct: 241 AVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVALA 300

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + +    +   + A     P  GR + +              + +A           L+
Sbjct: 301 TLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALA 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
               H  G+   V G     G         L   ++      V ++  +           
Sbjct: 354 AARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAIVA 409

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   L  +  V                  + DVV++  K 
Sbjct: 410 DILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 450


>gi|114327098|ref|YP_744255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315272|gb|ABI61332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Granulibacter bethesdensis CGDNIH1]
          Length = 539

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/468 (17%), Positives = 148/468 (31%), Gaps = 36/468 (7%)

Query: 4   LWTFHDLLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +    +LL         S+  +    ++GI+ DSR + P   F A+ G   DG  FI  A
Sbjct: 49  MMMLSNLLADTSAAPVTSLTGMAGVHISGITADSRQVMPGWVFAALPGQKTDGRRFIADA 108

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++         G    P+    +    L  +A         TI AITG+ GKT
Sbjct: 109 VERGAAAILAPAGTAWPPGVPPRPMIQDAEPRRLLALMAARLAGAQPHTIAAITGTNGKT 168

Query: 121 TTKEMLTIALS------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-- 166
           +T + L    +             +                      + +    GI    
Sbjct: 169 STADFLRQIWTLLGRSAASLGTLGLIAEGFHPQDSLTTPDPVTLAQTLAMLARAGIQHTA 228

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L  S  G  +F    VR   A  T +   HL          +AK  +F  L   G   + 
Sbjct: 229 LEASSHGLDQFRLDGVRLSAAAFTNLTRDHLDYHGTEAAYRTAKLRLFADLLPAGAPAIA 288

Query: 227 YDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                   L+A +  A           S ++   L   +  +   ++ ++ +G +  +  
Sbjct: 289 SPTLDQITLEALRGIARRRGLRLIIAGSPDSPLPLLAIEPHAGGQYLTIREEGTTHRINV 348

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G   A N++    I + L       +  LS      GR ++     N      +D +
Sbjct: 349 PLPGRFQADNIITAATIAASLGKRGIVPL--LSRLTGVRGRMEQAATLPNGA-AIYVDYA 405

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +         +L  + PH  G+   V G     G         L    +  +   + 
Sbjct: 406 HTPDALE-----RLLDALRPHTSGKLHVVFGA----GGDRDPGKRPLMGEAARTHADRLI 456

Query: 406 LSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVV 447
           ++       +   ++ A+  +                   SL  GDV+
Sbjct: 457 VTDDNPRSENPAKIRAAILAACPDAEEIGDRAEAIAHAIRSLQPGDVL 504


>gi|300919640|ref|ZP_07136131.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300931788|ref|ZP_07147088.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
 gi|300413280|gb|EFJ96590.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 115-1]
 gi|300460448|gb|EFK23941.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 187-1]
          Length = 471

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKANDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|257453303|ref|ZP_05618602.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|317059835|ref|ZP_07924320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
 gi|313685511|gb|EFS22346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. 3_1_5R]
          Length = 479

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/471 (17%), Positives = 154/471 (32%), Gaps = 51/471 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ +Q   +         G+  DSR I     F A++G   DGH FI  A++KGA L
Sbjct: 2   EKLLEGLQYEILQKPEVEIFTGMEHDSRKIVEGSIFVALEGEVVDGHTFIDTAIEKGAKL 61

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           ++V+ ++        I    + ++   L  LA       +    I+ +TG+ GKTTT  +
Sbjct: 62  IIVSKEVP---CQKGIGYVLIKNLRKHLGILASNFYGWPQKNIKILGVTGTNGKTTTTYL 118

Query: 126 LTIALSSI-------KKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSH 171
           L   L           +              P       +        +++ I E+  SH
Sbjct: 119 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLVRMIKKAYDQGLEYIIMEV-SSH 177

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             E+  + +++    A+ T +   HL     +E+   AK ++F  L       LN DD +
Sbjct: 178 ALELGRV-NMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKAIKVLNVDDEY 236

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L+ + H +   T            +++      E    +V+L     +         
Sbjct: 237 GRRLQEEFHGISYGTKQ---------AEVQGKILGFEGGKEKVELSLFGKKKECKIQILG 287

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                 +   I  +    +        V   +   G+       Q +  +ID ++  +  
Sbjct: 288 GFNLYNLLGSIALVKELGMSEEEIFAKVELLQGAPGRFETVDCGQDYMVVIDYAHTGDAL 347

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                 ++L  I      + I + G     G         +   ++      V L+  + 
Sbjct: 348 E-----NILQAIQEIKTKKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNP 398

Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +K    +  H+   E               GD+V++  K 
Sbjct: 399 RTENPESILEEVKGGFTKENHICVLE-RAEAIAEGIRRAEKGDIVLIAGKG 448


>gi|150260415|ref|ZP_01917143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
 gi|218927746|ref|YP_002345621.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Yersinia pestis CO92]
 gi|21362700|sp|Q8ZIF4|MURE_YERPE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|115346357|emb|CAL19229.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diam i nopimelate
           ligase [Yersinia pestis CO92]
 gi|149289823|gb|EDM39900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis CA88-4125]
          Length = 490

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 146/463 (31%), Gaps = 43/463 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 11  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 70

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI- 133
           +     +PV  + ++   L+ LA     +      ++ +TG+ GKTTT ++L     ++ 
Sbjct: 71  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGAALRLVGVTGTNGKTTTTQLLAQWSQALG 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTH 180
           + +       N  +G  +                            + +S  G I+    
Sbjct: 131 ETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFAAMEVSSHGLIQDRVA 190

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +     V T ++  HL     +    +AK  +F   +    I    DD     L     
Sbjct: 191 ALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINADDDVGRRWLSQLPQ 250

Query: 241 ALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           A+ +    +  K  N  +    K       + +         E+    +G     N+L+ 
Sbjct: 251 AVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELESRLMGAFNVSNLLVA 310

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  + +    +   + A     P  GR + +              + +A           
Sbjct: 311 LATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKA 363

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L+    H  G+   V G     G         L   ++      V ++  +         
Sbjct: 364 LAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVVVTDDNPRSEEPQAI 419

Query: 413 --ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   L  +  V                  + DVV++  K 
Sbjct: 420 VADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 462


>gi|268318029|ref|YP_003291748.1| Mur ligase middle domain-containing protein [Rhodothermus marinus
           DSM 4252]
 gi|262335563|gb|ACY49360.1| Mur ligase middle domain protein [Rhodothermus marinus DSM 4252]
          Length = 538

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 97/364 (26%), Positives = 154/364 (42%), Gaps = 21/364 (5%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A  KLA         TII ITGS GKT+TK ++   LS   +  A  GSYN  +G+  
Sbjct: 177 RKARRKLAAH----PNLTIIGITGSYGKTSTKFIIAEILSLRYQVLATPGSYNTPMGICK 232

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +  +    + E+G+ H G+IR L  + RP I V+T + P HL     IE IA  K
Sbjct: 233 VINEQLRPEHQVLVLEMGIRHPGDIRELCAIARPDIGVVTAVGPMHLETMGSIEAIAREK 292

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           +E+       G + LN DD     +  +  A G     S   +  AD   R      E +
Sbjct: 293 SELVACTRPGGPVVLNADDPRVAAMAER--ARGPVWRVSVEGNPEADLVARDITYGPEGT 350

Query: 271 WMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              V+ +  + +      +G H   N+L+ L +  I    +     A++   P E R + 
Sbjct: 351 RFVVRDETGTEQVFQTRLLGRHNVLNILLALAVGRIFGLRLRQMAHAVARLRPVEHRLQL 410

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G  T+ID+++N+NP       + L  +     GRRI V   M E+G      +
Sbjct: 411 RRE----GPITVIDDAFNSNPVGA---RNALEILGQFRTGRRIVVTPGMVELGAREAEEN 463

Query: 390 IDLAEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             L   ++  ++    L G          L++A      +H   ++     F+++ L  G
Sbjct: 464 RALGRFMAQ-HVDLAVLIGPRRTLPIQEGLREAGFPEDRIHVFRSLFEAQDFLKTYLQPG 522

Query: 445 DVVV 448
           DVV+
Sbjct: 523 DVVL 526


>gi|303232802|ref|ZP_07319487.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
 gi|302481288|gb|EFL44363.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Atopobium vaginae PB189-T1-4]
          Length = 545

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 14/215 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQ------GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           T  D+  A     I  +          V+ + IDSR +     F A  G H +G+D+ L 
Sbjct: 5   TVQDICSATSAQVIAPLAAGASCTLRSVD-VVIDSRRVQKGSMFVAFIGEHTNGNDYALR 63

Query: 60  AVQKGAGLVV----VNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLR-SKATIIA 112
           A++ GA  +      + D++ +       +     DD    L +LA   R +     ++ 
Sbjct: 64  AIEAGAACICLTQDASQDLICAAEQNGCVLLRAQNDDAETFLLRLASWWRTQNMHWIVVG 123

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKTTTK++   AL++  + +A  G++NN IGVPLT+       +  + E+GM+H 
Sbjct: 124 ITGSCGKTTTKDLCAQALATRYRVHATQGNFNNLIGVPLTILSASAQDEVIVCEMGMNHP 183

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           GE+  L+ +  P + VIT I  +H+      E IA
Sbjct: 184 GELATLSRVALPCLCVITNIGTSHIGILGSREAIA 218



 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 10/191 (5%)

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +           + L  L I   L  D   AI+A+           R           
Sbjct: 360 HALSMSQPSKAACIDALFALAIADELACDRSAAIRAIEACSCVH---MRLEEISRPHKPF 416

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+SYNA+PAS+  A++VL   + +   R IA+LG++ E+G  S   H  +    +   
Sbjct: 417 IIDDSYNASPASIAQALAVLHHCTGYT--RHIAILGEVGELGNQSARLHDYIGAYAAASG 474

Query: 401 ISHVWLS-GFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  +    G     + +A       +  +HY   +    L I   L + D V+VK+S +C
Sbjct: 475 VDMLVFVGGEDAKRMVEAARTMGYPAEQLHYVRDVHEAQLRIAPLLRETDAVLVKASRAC 534

Query: 456 GFYRLINLLLE 466
                +  +++
Sbjct: 535 MLDVFVKGVIQ 545


>gi|326315565|ref|YP_004233237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372401|gb|ADX44670.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 519

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/432 (18%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +  + L+ ++ H+           +  DSR + P + F A  G   DG   +  A+ +
Sbjct: 16  LGSVPEALEWLRAHAPHGA-------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA   +V  + V +    +  V  + D+  A   LA         +  ++A+TG+ GKT+
Sbjct: 69  GAAACLVEREGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTS 128

Query: 122 TKEMLTIALSS-----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------------ 164
           T   L  AL+      +     C       +GVP  L    +     +            
Sbjct: 129 TTWWLADALNQLAGSGLAAHGGCGLIGTLGVGVPPELECTGLTTPDPVRLQQAFAGFVAN 188

Query: 165 ----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                 +  S +G        +R  +AV T     HL   +G+     AK+ +F+     
Sbjct: 189 GLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQ 248

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +    D    E   A + A     +++   +  A  Q R            V    ++
Sbjct: 249 AAVVNIDDPRGGE--LADTLAQRPIDLWTTSITGPARLQARDITWGEGGLRFTVAEGVQA 306

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG++   N+L  +  +  L   ++ A+ A +   P  GR              
Sbjct: 307 HVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGR---MELIHEPDQPL 363

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +  + Y   P +++ A+  L  ++    GR   V G     G         L   ++   
Sbjct: 364 VAVD-YAHTPDALEQALQALRPVAEQRGGRLWCVFG----CGGNRDRAKRPLMGRIAQQR 418

Query: 401 ISHVWLSGFHVL 412
              V ++  +  
Sbjct: 419 ADAVIVTSDNPR 430


>gi|300821910|ref|ZP_07102054.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|300525510|gb|EFK46579.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 119-7]
 gi|324017754|gb|EGB86973.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 117-3]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|212702352|ref|ZP_03310480.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
 gi|212674230|gb|EEB34713.1| hypothetical protein DESPIG_00365 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/451 (15%), Positives = 128/451 (28%), Gaps = 41/451 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87
           I  DSR +   + F A+ G + DG  FI  AV+ GA  +V         +  +    V  
Sbjct: 26  IRSDSREVGKGDIFVAVPGVNADGARFIPPAVEAGASTIVCLPGGAEAEAARAAGCTVVH 85

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
            DD   AL +L  A          ++ +TG+ GKTT+  +L    ++       +G+ + 
Sbjct: 86  HDDPREALWRLAEARWHTGSLPLRVLGVTGTNGKTTSAYLLEHLFTATGHKVGVLGTVSY 145

Query: 146 HIGVPLTLARMPVDVDFGIFELGM--------------SHLGEIRFLTHLVRPHIAVITT 191
                   A +       +  +                S     +     V    A  + 
Sbjct: 146 RWPGHCEAAPLTTPDPLRVHAMLAAMAQAGVDIAVMEVSSHALEQQRVCGVPFAGASFSN 205

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E    AK+ +F  L +   +     D  +     +     +       
Sbjct: 206 LTQDHLDFHQDMESYFRAKSRLFLELPRADKVMAINGDDPWGRRLLELCPRALSFGLQKA 265

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             +            ++   + + L G+  E+    +G   A N+L    +   L    D
Sbjct: 266 LPQQRHLWGELLSAGTDGCHLRMHLDGQQWELRSPLVGAFNASNLLSVQALALELGLMPD 325

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                L       G   R     N     +  +  +   A     ++VL  +   G  R 
Sbjct: 326 D----LRHLEGFHGVCGRLERVPNARKLHVFVDYAHTPDA----LVNVLKALRGAGFKRI 377

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPRSI 422
           + V G     G         +             L+          A+       L    
Sbjct: 378 VTVFG----CGGNRDRTKRPIMGEAVARYSDVAVLTSDNPRFEDPEAILKDVLPGLREDR 433

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V                L   D +++  K 
Sbjct: 434 EVVVEVDRRKATAKAVEMLGPDDALLIAGKG 464


>gi|300900884|ref|ZP_07119021.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
 gi|300355648|gb|EFJ71518.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 198-1]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L   S A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLSDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LSDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300816123|ref|ZP_07096346.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
 gi|300531330|gb|EFK52392.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 107-1]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTALGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300690336|ref|YP_003751331.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
 gi|299077396|emb|CBJ50021.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum PSI07]
          Length = 514

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/480 (17%), Positives = 147/480 (30%), Gaps = 53/480 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G    H DG   I  A++ GA
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKAGDVFVAYVLGNVRQHGDGRPHIPQAIEAGA 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+             + +  VDD+      LA             +I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPADAPLRILPVDDLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
            + +  ALS   +  A +G+                     +  +LA +       +  +
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLAELHRAGARAVA-M 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +      R  IA+ T +   HL     + E   AKA +F        +    
Sbjct: 192 EVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRD 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           D +   LL      +        G+           +    +     +  ++        
Sbjct: 252 DAAGVRLLTGLRAGIEAIEYGIDGEAAAQRGAGHWLRATNVRVHRTGTTFDIDGSFGRAT 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N L  LG++ +       AI  L    P  GR +R+            
Sbjct: 312 VHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD- 370

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L+ I+    GR  AV G     G             ++     
Sbjct: 371 ---YAHTPDALEQTLRALAPITEARAGRLWAVFG----CGGDRDPGKRPQMGAIAERLAQ 423

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV L+  +  +         + D +         E      L         DV+VV  K 
Sbjct: 424 HVVLTSDNPRSEDPQQILDMIADGMEDPYAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|67922594|ref|ZP_00516100.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
 gi|67855522|gb|EAM50775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Crocosphaera watsonii WH
           8501]
          Length = 501

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 150/458 (32%), Gaps = 43/458 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-S 82
           +  V GIS +S S    + F  + G   DG +F   A++ GA   +++            
Sbjct: 27  EREVKGISTNSHSCQLGDIFIGMPGTRVDGGEFWQSAMEVGAVAAIISPQAAQKFPPKDD 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK----- 135
             V  V+D++    ++A A       +  ++ ITG+ GKTTT  ++   L+  +K     
Sbjct: 87  DCVIIVEDIITVAAQIAAAFYDYPAQQLKMVGITGTNGKTTTTHLVEYFLNQCQKPTALI 146

Query: 136 ---TYACIGSYNNHIGVPLTLARMPV--------DVDFGIFELGMSHLGEIRFLTHLVRP 184
                   G     +        +          + ++ + E+  SH      +      
Sbjct: 147 GTLYTRWPGFERTAVHTTPFAPELQEQLAEAVAANNEYCVMEV-SSHALVQGRVKQCP-F 204

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V T +   HL     +E+  +AK  +F          +N DD + + L        +
Sbjct: 205 QVSVFTNLTQDHLDFHKDMEDYFAAKRLLFTPDYLQEKAIVNLDDPYGKRLIDSFQTEQV 264

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T     +   ADF        +      +     ++E     +G     N+L  +  V 
Sbjct: 265 WTY--SVEDTKADFYTSNLTYQANGVTGTLTTPFGNIEFTSPLVGQFNLSNVLAAVATVL 322

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  DV   ++ L  F    GR +R +    Q    ++D ++  +        ++L    
Sbjct: 323 YLGLDVREVVEKLPHFLGVPGRMERVQINDKQDISVIVDYAHTPDSLE-----NLLKAAR 377

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           P  +G+ I V G     G         L    S        ++  +            + 
Sbjct: 378 PFIKGKMICVFG----CGGDRDRTKRPLMGQASAQLADVSVVTSDNPRTEDPQRILEDVL 433

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +P +I                     GD V++  K 
Sbjct: 434 TGIPETIEPLVISDRAKAINTAILQANPGDGVLIAGKG 471


>gi|323160117|gb|EFZ46078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli E128010]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|307824826|ref|ZP_07655049.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
 gi|307734184|gb|EFO05038.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacter
           tundripaludum SV96]
          Length = 538

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 81/504 (16%), Positives = 160/504 (31%), Gaps = 68/504 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL      +        V G+ +DSR +   + F A+ G    G   +  AV  GA 
Sbjct: 15  LKDLL--TGLATFLDQDDIPVAGLVLDSRELVCGDVFVALAGAKQHGLAHVEQAVNNGAC 72

Query: 67  LVVVN--------TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
            V+ +         +      S  +P+  V+++   L +LA           T+I ITG+
Sbjct: 73  AVIFDPAGNGRQLAEAFRCDSSTPVPMIAVENLGLKLGELAARFYCDPSQFMTVIGITGT 132

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166
            GKT+  + L+  L              + +   L      + +   + E          
Sbjct: 133 NGKTSCSQFLSQMLDDCGIIGTLGWGEWDKLNKTLNTTPDALAIQKILAELLKDKKRTVA 192

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +   + V    AV T I+  HL     ++    AK  + +           
Sbjct: 193 MEVSSHGLEQGRVNGVTFKGAVFTNISRDHLDYHGTMDAYVQAKLALLKQPGLAFAAVNL 252

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVV 284
            D     ++ A   ++ +      GK+ ++   +         +    +V+ + +   V 
Sbjct: 253 DDGYSERVIAAVPESVQLWQFSVKGKTADSGECVSAENILHKTDGIEFDVRFRDELQRVQ 312

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G    +N+L  L ++  +   +  A+K L+   P  GR +R+    +   F     
Sbjct: 313 VPLFGDFNVENVLAVLTVMLAMEVSLQEAVKKLAGIKPVNGRMERFGAETDPMIFVDYAH 372

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A          VLS +  H +     V G     G    +        ++     HV
Sbjct: 373 TPDALD-------KVLSSLRKHCKQALWVVFG----CGGNRDTGKRPQMGKIAEQWADHV 421

Query: 405 WLSGFHVL-----ALKDALPRSI--------------------HVHYSETMDGLFLFIQS 439
            ++  +        + + +                         V   +  +     + +
Sbjct: 422 VITDDNPRYENGLDIVNDILAGCSSTAKDGGSVATDMEPVRPAKVEVIQNREQAIQKVVA 481

Query: 440 SLVDGDVVVV--KS------SNSC 455
           S    D +V+  K       SN  
Sbjct: 482 SAAKNDCIVIAGKGHEQYQESNGV 505


>gi|300309673|ref|YP_003773765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
 gi|300072458|gb|ADJ61857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 84/486 (17%), Positives = 154/486 (31%), Gaps = 56/486 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              HD+            P   +     DSR +AP + FFA  G   DG  +I  AV++G
Sbjct: 6   LNLHDIQAW----LRQAAPSAQLTS---DSRRVAPGDVFFAYVGD-ADGRSYIADAVERG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  VV           + +P   V D+     ++A +   +       +A+TG+ GKT+ 
Sbjct: 58  AAAVVYEAAGFTWPAQIDVPHLAVTDLKSHAGEIAASWYGQPDQGMLTVAVTGTNGKTSC 117

Query: 123 KEMLTIALSSIKKTYACIGSYNN-----HIGVPLTLARMPVDVDFGI------------- 164
              L IALS +                   G P             +             
Sbjct: 118 AYWLGIALSRLAGASTAGVIGTLGVGSFVNGKPQGFDVTGYTTPDAVLLQRSLFKLAQGR 177

Query: 165 ---FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                +  S +G  +   + +   +A++T     HL     ++    AK ++F+      
Sbjct: 178 VGALAIEASSIGLAQGRMNGMHVDVALLTNFTRDHLDFHGDMQTYEDAKRKLFQWPGLKH 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF------QLRKWKQCSEQSWMEVQ 275
            +    DD    LL   +        Y+    +  D       +  + +     +   V 
Sbjct: 238 AVVNLDDDMGQRLLPLLAERKVPVIGYAIADEQGGDPHGVPTLRASQLRSSHTGTVFHVD 297

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               S +V    +G     N+L  +G++       D  + A +   P  GR    +    
Sbjct: 298 SPFGSGQVKTQLVGRFNVSNVLGIMGVLLTQGVAWDAVVAAAAALSPAPGR---MQQFGG 354

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + Y   P ++   +S L Q++    G+   V G     G+        + ++
Sbjct: 355 PDVPLIVID-YAHTPDALDKTLSTLRQLATQRGGQLWCVFG---CGGDRDPGKRPQMGQI 410

Query: 396 LSLYNISHVWLS-----GFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447
                   V L+          A+ D +      +         G  L+        DVV
Sbjct: 411 AEQA--DQVVLTSDNPRSEDPQAIIDQIRAGMSRVEPVVLPDRAGAILWAIRHATKADVV 468

Query: 448 VV--KS 451
           ++  K 
Sbjct: 469 LLAGKG 474


>gi|330012012|ref|ZP_08307229.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328534001|gb|EGF60653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 130/453 (28%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A++G   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 2   TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +  +   L+ LA     +    +  +  +     T     +A  +              
Sbjct: 62  YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121

Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   +          +                  + +S  G ++     ++   +V T
Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + ++        E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAHTPDA-------LEKALQAARLHCSG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +      E              + DVV+V  K 
Sbjct: 411 AGQAKVMEGRAEAVTNAVMQAKENDVVLVAGKG 443


>gi|160896912|ref|YP_001562494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Delftia acidovorans SPH-1]
 gi|160362496|gb|ABX34109.1| UDP-N-acetylmuramyl-tripeptide synthetase [Delftia acidovorans
           SPH-1]
          Length = 509

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 150/481 (31%), Gaps = 47/481 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T  + +Q +     G         +  DSR + P +AF A  G   DG   +  A+++
Sbjct: 10  LSTATEAVQWLAARLQGSGT------LQTDSRKVRPGDAFIAWPGGATDGRAHVASALER 63

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA   +V    V + G     +  +  +  A   +A            ++A+TG+ GKTT
Sbjct: 64  GAMACLVEAQGVEAFGFSGEHIAALPGLKAATGLIADQWFQHPSAQIDVLAVTGTNGKTT 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163
           T   L  AL+ +K       +    +GV                       R   D    
Sbjct: 124 TAWWLAHALAQVKLQERSGCALVGTLGVGIPPAMESTGMTTPDPVRLQRAFREYADAGLA 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221
              +  S +G +       R  +A+ T     HL     ++    A A    + GL+   
Sbjct: 184 ACAIEASSIGIVEHRLDGTRIRVALFTNFTQDHLDYHGSMQAYWDAKAALFDWPGLQAAV 243

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +   +                ++S      A  Q +     +E     V   G S+
Sbjct: 244 VNVDDAHGARLWATLQSRKQPAALDVWSISIEGAARLQAKDIALGAEGLSFTVIEAGHSL 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G +   N+L  L  +  L   +D A+ A     P  GR ++            
Sbjct: 304 RMHTRMVGQYNVSNLLGVLAALRCLGLTLDQAVAACVHLEPVPGRMQQIVQPGQPLVAVD 363

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P ++  A+  L   +    GR   V G     G    +    L    +  N 
Sbjct: 364 ----YAHTPDALDKALRALRPAAEQRRGRLWCVFG----CGGDRDATKRPLMGQAAQKNA 415

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +    ++              +   + DVV++  K
Sbjct: 416 DCVLVTSDNPRSEVPDRIIDQILAGMQPGENLQSQADRAAAIAQAIAHASERDVVLIAGK 475

Query: 451 S 451
            
Sbjct: 476 G 476


>gi|260655418|ref|ZP_05860906.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
 gi|260629866|gb|EEX48060.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Jonquetella anthropi E3_33 E1]
          Length = 497

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 155/476 (32%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQG----FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             DL +A  G  +G           + +  DSR + P + F  + G H+DGH FI+  ++
Sbjct: 9   LDDLKRA--GFLLGWGGDWNDLKETSRLCSDSRLVKPGDVFACVCGRHFDGHSFIMEGLR 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            G    ++                 V DV  A+  LA         +  ++A+TG+ GK+
Sbjct: 67  LGVAGFMIERPTDGLDN-----WIQVTDVRAAMGFLAARLAGSPCDRLKMVAVTGTNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFE 166
           T+  M+   LS+       IG+   H G                  L    +    G   
Sbjct: 122 TSSYMIRSVLSACGIKTGLIGTVVYHDGDKETVADRTTPESTALQRLYESMIANGCGACV 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFL 225
           +  S  G ++          A+ T ++P HL     +EE  A+      E L+    I +
Sbjct: 182 MECSSHGLVQGRISGSTYDGALFTNLSPEHLDYHGTMEEYFAAKSLLFTEHLKPNAVISV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D + + L A+  +       ++G    AD +++  +   +    +  LQ     +  
Sbjct: 242 NGCDPWGQKLAARFPSS-----LTWGLGDGADVRVKADRLTMKAGGSDFDLQVDGQFLGR 296

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+   LG  S+      +    +           R          T+I + 
Sbjct: 297 VALPMTGRFNVENALGAASLCIGLGCSPEAVVKGLETMPQVPGRMERINLSNGVTVIVD- 355

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +     ++   ++ L  ++       I+V G   E    ++    +L ++        V 
Sbjct: 356 FAHTEIALTNLLATLRPLAKR----LISVFGHGGERFAGARP---ELGKIAGQT-ADRVI 407

Query: 406 LS---------GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++              A+   L           +              GDVVV+  
Sbjct: 408 VTMDNPRNEDPAEIARAIVAGLEGGKASFSTVLSRRDAVFAALDEAERGDVVVISG 463


>gi|29832659|ref|NP_827293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces avermitilis MA-4680]
 gi|46576989|sp|Q82AE1|MURE_STRAW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29609779|dbj|BAC73828.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Streptomyces avermitilis
           MA-4680]
          Length = 506

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 147/475 (30%), Gaps = 44/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   +        V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELAGQMGAAT--PERDAEVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  VDD  G + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGADRAAATGLPVLVVDDPRGRMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L +++ T              +   R   +                    + +S 
Sbjct: 135 LIEGGLRTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVSS 194

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          IAV   ++P H+   S +E+   AKA++      T         +F
Sbjct: 195 HALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFRAKAQL-----FTPQRSKLGVVNF 249

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +    +        I +F    + D   R              + G   E +       
Sbjct: 250 DDEYGRRLVEEAGVPIVTFSAEGHPDADWRAQDVEVGPMDSTFTVIGPKEERITARSPLA 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L A       A        G   R         +  + +  +    
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDVGQPYLAVVDYAH---- 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
              A  SVL  +    EG+   VLG     G+  ++  + +    +    + V  S    
Sbjct: 366 KTDAVESVLRALRKVTEGKLHIVLG---CGGDRDRTKRMPMGAAAARLADTAVLTSDNPR 422

Query: 409 -FHVLAL-------KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               LA+          +P      V   E        + +    GD V+V  K 
Sbjct: 423 SEDPLAILATMLAGAAEVPSHERGEVQVFENRAAAIAAVVARARPGDTVLVAGKG 477


>gi|332098940|gb|EGJ03891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 70/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + ++           +         E+  H IG     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKVIDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTVPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|227529886|ref|ZP_03959935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
 gi|227350190|gb|EEJ40481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus vaginalis ATCC 49540]
          Length = 512

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 90/489 (18%), Positives = 161/489 (32%), Gaps = 62/489 (12%)

Query: 4   LWTFHDLLQ-----------AIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKG 48
           + T  ++              I G     VP+      V  +S DSR ++    FF  KG
Sbjct: 1   MLTLKEITDLLKENGLYKEIIIDGDWYYTVPEKAARAEVTDLSYDSRKVSDGTLFFC-KG 59

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS 106
             ++  +++  A+++GA   +        +     S P   V DV  A+  +A       
Sbjct: 60  LKFNP-EYLASAIKEGATAAISELVYTDKLDQEAQSTPQIIVTDVQKAMAVIARHFYGCP 118

Query: 107 KAT--IIAITGSVGKTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVP--- 150
                +I  TG+ GKTT+       L+              +          H+  P   
Sbjct: 119 DEKLELIGFTGTKGKTTSVYFTRHILAHEFGPVVGQFSSIDECVDGKNFIEAHLTTPESL 178

Query: 151 --LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEI 206
               + +  VD       + +S     +   + +  +I V   I+P H+S       ++ 
Sbjct: 179 DLFRMMKEAVDNGMKYLAMEVSSQAYKKSRVYGLHFNIGVFLNISPDHISLVEHPTFDDY 238

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQ 265
              K++I    +   T+ LN    ++ELL  K+H LG K I       +AD++   K   
Sbjct: 239 LWCKSQIIVNSD---TVILNRYMDYYELLAQKAHELGKKLITFGSDESDADYRYHGKDHG 295

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             + S     L   + E      G+    N L  + + + L  D     + L        
Sbjct: 296 YFDVSTHNDNLPEVTGEFRVMIPGHFNYSNALAAITVSAQLKDDTSDFAQGLKETKVPGR 355

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                    N        + Y  N  S+  +   +    P  +GR I V+G     G  +
Sbjct: 356 ----MEFLKNNAGMVACVD-YAHNYLSLSESFKFMKHEYP--DGRLIVVIGAA---GGKA 405

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV--------LALKDAL-PRSIHVHYSETMDGLFLF 436
           +S   D+   LS Y    +  S  +           +K+ +   ++ V  +         
Sbjct: 406 ESRRKDVGRALSEYADVAILTSEDNFFEDPHHIDETIKEHITNPNVKVIINVDRVAAIKQ 465

Query: 437 IQSSLVDGD 445
                  GD
Sbjct: 466 AFEMAKPGD 474


>gi|300938480|ref|ZP_07153220.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
 gi|300456549|gb|EFK20042.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 21-1]
          Length = 471

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L     L   
Sbjct: 242 NPNCHGRWLKASDVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATQLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LAELLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|325282417|ref|YP_004254958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324314226|gb|ADY25341.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 491

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 137/462 (29%), Gaps = 51/462 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+  V G++ ++    P   F A++G   DGH FI  A ++GA  V+     + +    +
Sbjct: 19  PEADVTGVTHNAAWAEPGSLFVAVRGARADGHSFIAQAQERGAVAVLGE--GLPTGVQTT 76

Query: 83  IPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--- 137
           +P   V D   AL  LA            ++ +TG+ GKTTT  +    L +        
Sbjct: 77  LPYLQVPDARAALADLAAELHGHPSRDLKVVGVTGTDGKTTTSWLTRHLLRAAGLPTGLL 136

Query: 138 ------------ACIGSYNNHIGVPLTLARMPV----DVDFGIFELGMSHLGEIRFLTHL 181
                           ++      P   + +           + E   S           
Sbjct: 137 STAGYELPDGKLRQFPAHFTTPEAPQLQSILRELLQAGAQAAVLE--ASSHALALHRVRG 194

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V    A+ T +   HL     +E   + K  +                +  +    +   
Sbjct: 195 VAWDAAIWTHLTREHLDFHGSVEGYFADKRRL-------IEAAPFAVLNADDPWTEQLRG 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +  + +    +   AD+Q  K +Q        V             IG     N L  + 
Sbjct: 248 VAPQEVTYSAEGGAADWQADKVQQSGRGLSFRVHSPLGEFAAELPMIGAFNVANALAAMA 307

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
             + L A  +     L+ F    GR +  R         ++D ++        +    L 
Sbjct: 308 AAAHLGATAEQLQAGLASFGGVPGRMQLVRGPAGPQPRVIVDFAHTP-----PSLEKALQ 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------VLA 413
            +     G+   V+G     G         L EV        ++    H        + A
Sbjct: 363 TLRSTTGGQLWVVIGSAG--GNRDPLKRAPLGEVAGRCADQAIFTEEDHRETPLQDILAA 420

Query: 414 LKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++       H ++           +  +    GD V++  K 
Sbjct: 421 MERGAREGGHSNFRSIPDRQEAIRYAVTQAQPGDTVLLAGKG 462


>gi|291086123|ref|ZP_06354888.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
 gi|291069447|gb|EFE07556.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citrobacter youngae ATCC 29220]
          Length = 471

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAASGDLFVAVLGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSY 143
            +  +   L+ LA         K  ++ +TG+ GKTTT ++L      + +T        
Sbjct: 62  YLSQLNERLSALAGRFYHEPSEKMRLVGVTGTNGKTTTTQLLAQWCQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                         +  + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLAGLVAQGATVGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +       + E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAVDVNYHDSGATIRFTSSWGNGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKTTVVVDYAHTPDA-------LEKALQAARLHCTG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADVVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +      E              + DVV+V  K 
Sbjct: 411 AGRAKVMEGRAEAVTNAIMQAQENDVVLVAGKG 443


>gi|94676860|ref|YP_588953.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|94220010|gb|ABF14169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 495

 Score =  118 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/481 (14%), Positives = 145/481 (30%), Gaps = 48/481 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  +LL       I  +P +  + GIS++S +    + F AI+G   DG D+I  A+ K
Sbjct: 1   MTLRELL----APWIKQIPFECLITGISMNSMTAQYGDLFIAIQGHKQDGRDYIPSAIAK 56

Query: 64  GAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           G   ++         G +     +P+   + +   L+ +A     +      +I ITG+ 
Sbjct: 57  GVAAILAEAKGQTKHGEIHKLHDVPIIYFNQLNKMLSAIAGHFYQQPSRFLRLIGITGTN 116

Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--------- 167
           GKTT   +L   LS + + +       N   G                  L         
Sbjct: 117 GKTTISYLLANWLSLLGETSAVMGTIGNGIFGNLNASNNTTSSAIEIQRFLRQVCDQGVK 176

Query: 168 ----GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                +S  G ++     +    AV + ++  HL     + +   AK ++F  L  +  I
Sbjct: 177 FSIIEVSSHGLVQDRVSNLNFAAAVFSNLSQDHLDYHLDMVQYEKAKWKLFSELNVSKRI 236

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D      L     A+ +    S     N        ++    +             
Sbjct: 237 INVDDTVGKNWLVHLPQAVAVTANNSI--PHNWPGYWLCARKIIHHTSGVNINFNSYWGS 294

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      N+   L  ++ L     +    +      +    R       G+  +I 
Sbjct: 295 GEIYSNLIGEFNVSNILLSLATLLVLGYSLKNLVKTSRKLQAICGRMEVFSAHGWPVVIV 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +   A        L  +    +G+   + G     G         +   ++     +
Sbjct: 355 DYAHTPDA----LAKALLAVKMRCQGKIWCIFG----CGGNRDKSKRPIMGAIAEEYADY 406

Query: 404 VWLSGFHVLA------LKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--K 450
           + ++  +         ++D     I+ +++                      D++++  K
Sbjct: 407 IIITNDNPRWEEPQDIIEDIKCGFINGNHTNKTVILCRSLAIQHAIIHASPQDIILIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|120609510|ref|YP_969188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
 gi|120587974|gb|ABM31414.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax citrulli AAC00-1]
          Length = 519

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 147/432 (34%), Gaps = 40/432 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L +  + L+ ++ H+           +  DSR + P + F A  G   DG   +  A+ +
Sbjct: 16  LGSVPEALEWLRAHAPQGA-------LRTDSRQVEPGDIFIAWPGAATDGRMHVGEALAR 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA   +V  + V +    +  V  + D+  A   LA         +  ++A+TG+ GKT+
Sbjct: 69  GAAACLVEREGVEAFRFGAEGVAALRDLKAATGLLAADWFGMPTQRLDVVAVTGTNGKTS 128

Query: 122 TKEMLTIALS-----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI------------ 164
           T   +  AL+      +     C       +GVP +L    +     +            
Sbjct: 129 TTWWIADALNLLAGSGLATHGGCGLIGTLGVGVPPSLQGTGLTTPDPVRLQQAFAGFVAN 188

Query: 165 ----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
                 +  S +G        +R  +AV T     HL   +G+     AK+ +F+     
Sbjct: 189 GLGACAIEASSIGLAEHRLAGMRLRVAVFTNFTQDHLDYHAGMAAYWQAKSALFDWPGLQ 248

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +    D    E   + + A     +++   +  A  Q R            V    ++
Sbjct: 249 AAVVNIDDPRGGE--LSDTLAQRPIDLWTTSITGPARLQARDVTWGEGGLRFTVAEGVQA 306

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    IG++   N+L  +  +  L   ++ A+ A +   P  GR +            
Sbjct: 307 HVLQTRVIGHYNIHNLLAVVASLRALGIPLEHALWACAQLAPVPGRMELIHEPGQPLVAV 366

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y   P +++ A+  L  ++    GR   V G     G         L   ++   
Sbjct: 367 D----YAHTPDALEQALQALRPVAEQRGGRLWCVFG----CGGNRDRAKRPLMGRIAQQR 418

Query: 401 ISHVWLSGFHVL 412
              V ++  +  
Sbjct: 419 ADAVIVTSDNPR 430


>gi|317124643|ref|YP_004098755.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
 gi|315588731|gb|ADU48028.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Intrasporangium calvum DSM 43043]
          Length = 563

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 80/466 (17%), Positives = 151/466 (32%), Gaps = 70/466 (15%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L +       G VP   V G S+DSR++ P + + A+ G +  G  F   AV+ GA
Sbjct: 14  SLRALAELSGA--AGPVPDLRVTGASLDSRTVLPGDLYAALPGFNVHGAQFSADAVRLGA 71

Query: 66  GLVVVNTDMVA---------------------------SIGSLSIPVFGVDDVLGALNKL 98
             V+ +    A                           +     +P+  VDD    L +L
Sbjct: 72  VAVLTDAAGAAVIRGQAGSADSAGAPHAAHSAHSAHSAAPPGTEVPLLVVDDPRARLGQL 131

Query: 99  AVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A A         T++ ITG+ GKTTT  +L  AL ++  +   IG+    +G     +  
Sbjct: 132 AAAIYGDPGADLTMVGITGTNGKTTTAYLLESALRALGCSTGLIGTIETRVGKERLDSSH 191

Query: 157 P----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                               D  + E+  SH  +   +  +V   +A+ T ++  HL   
Sbjct: 192 TTPEATDVHALLAVMRERGADTCVMEV-SSHALDQHRVDGVV-YDVALFTNLSQDHLDYH 249

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +E+  +AKA +F   E++ +  +  DD +   L  ++             +       
Sbjct: 250 GSMEDYFAAKARLFT-PERSLSGVVCVDDEWGRRLIDRATVPVTTLTTLPTPTSEPTPTS 308

Query: 261 RKWKQCS-------------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              +                      +  +     +                +  V++L+
Sbjct: 309 TGAEVDWSVVPRRGAAVDGASGQPFHLVHRSGDRSLSLASHLPGDFNVANTAIAAVALLS 368

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              + A    ++  P    G+    A            +   P ++      L+ + P  
Sbjct: 369 LGHEPARVEAALAVPPSVPGRMEVVAPGGTTDPRCIVDFAHTPDAIDV---ALAALRPST 425

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            GR IAVLG     G        +     +  +   V ++  +  +
Sbjct: 426 RGRLIAVLGA----GGDRDRGKREAMGRAAARHADIVVVTDDNPRS 467


>gi|169827840|ref|YP_001697998.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168992328|gb|ACA39868.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 464

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/388 (20%), Positives = 159/388 (40%), Gaps = 11/388 (2%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V +     +     I +  V +V  A  K     R +    I+AITG+ GKTTTKEM+
Sbjct: 62  VIVTDRAYRPTEIPTKIIIIQVANVDEAYWKFVHFYRNQFHIPIVAITGTSGKTTTKEMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+ ++  A   S N+       L  +  D +  +FE  +   G++       +P I
Sbjct: 122 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 181

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   HL+    +E    AK E+ + ++  GT+ +N +D   + L     +     
Sbjct: 182 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKL---DISKFNGR 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G   +  F+    +   +    ++    K+ ++   G G H   N L  +     +
Sbjct: 239 LVKVGIHDSCHFRASHIQYYQKGMNFKLHHNRKTYDIFVPGFGQHQVYNALAAIAAAYEI 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +     A +         K+ +         L+D++++    S++AA+ VL+++   
Sbjct: 299 GVPIPV---AANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAALKVLNELGDG 355

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD---ALPRSIH 423
            +   IAV+G + ++G      H    E++    +  +   G H   + D    L  +  
Sbjct: 356 KKK--IAVIGTITDLGSWGYIIHEQAGELIQRIGVDVLITIGEHARIMADHAVKLGFNAP 413

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           V+  +    ++  +Q  + +  +V++K 
Sbjct: 414 VYTYKNSTLVYPLLQKIIDENTIVLIKG 441


>gi|22654261|sp|O85298|MURE_BUCAP RecName: Full=Putative
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 497

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/468 (15%), Positives = 148/468 (31%), Gaps = 47/468 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T     
Sbjct: 13  WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72

Query: 78  IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL- 130
            G +    +IP+     +   ++ LA            II +TG+ GKTT  +++     
Sbjct: 73  HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132

Query: 131 -----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRF 177
                 +   T               T + + +     I          + +S  G ++ 
Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFEL 234
               +  +I + T +   HL     +++  SAK   F   +    I      Y   +   
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAKKWLRK 252

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L  K             K           K     + +E +       +    IGY   Q
Sbjct: 253 LSDKYTIAVTIQNEKQKKYSTKWINATGIKYNVNSTDVEFESSWGQGILSTCLIGYFNIQ 312

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L++   +  +   +   I       P  GR +++              + +A      
Sbjct: 313 NLLLSFASMLEMNYKLSDLINTSIQLQPILGRMQKFDVFGKPKVIIDYAHTPDA------ 366

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410
                L+ I  + + +   + G     G         L   +S      V ++  +    
Sbjct: 367 -LKKALNAIKSYYKKKIWCIFG----CGGERDQTKRPLMGSISEKIADRVIITNDNPRNE 421

Query: 411 -----VLALKDALPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKS 451
                +  +     +   +      +      F ++++   D++ +  
Sbjct: 422 NQNKIIKEIVQGCIKKEKIIIIPNREKAISSTFFKANI--DDIIFISG 467


>gi|257058188|ref|YP_003136076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8802]
 gi|256588354|gb|ACU99240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8802]
          Length = 501

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 150/474 (31%), Gaps = 46/474 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++             Q  V GI  +S +    + F  + G   DG  F   A++ GA
Sbjct: 13  TIQEI-------PPHPSLQREVKGICTNSHACQQGDLFIGMPGTRVDGGQFWTSALEAGA 65

Query: 66  GLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              ++  +  A       + V   +D++    +LA A       +  +I +TG+ GKTTT
Sbjct: 66  VAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTGTNGKTTT 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             ++   L+  +              G             ++   +   +        + 
Sbjct: 126 THLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAGNHYCVME 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +      +  +AV + +   HL     +E+  SAK+ +F          +N D
Sbjct: 186 VSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYLAKRAIINLD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D++ + L         +         +ADF        +      +     ++      +
Sbjct: 246 DAYGQRLIQ--GLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQGTIPFTSPLV 303

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L  +  V  L  D++  I  L  F    GR +R + +  Q    ++D ++  
Sbjct: 304 GQFNLSNLLAAVATVVHLGLDLNQVINQLPQFMGVPGRMERVQISDQQEISVIVDYAHTP 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L    P   G+ I V G     G         L   +S        ++ 
Sbjct: 364 DSLE-----NLLKAARPFIPGQMICVFG----CGGDRDRTKRPLMGQISAKLADVSVVTS 414

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   +P  ++                    GD V++  K 
Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIHQAIQQAQPGDGVLIAGKG 468


>gi|301026107|ref|ZP_07189582.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
 gi|300395678|gb|EFJ79216.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 69-1]
          Length = 471

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300905494|ref|ZP_07123258.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300923133|ref|ZP_07139193.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|301303815|ref|ZP_07209935.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|301330134|ref|ZP_07222803.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|300402644|gb|EFJ86182.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 84-1]
 gi|300420588|gb|EFK03899.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 182-1]
 gi|300840942|gb|EFK68702.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 124-1]
 gi|300843881|gb|EFK71641.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 78-1]
 gi|315253159|gb|EFU33127.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 85-1]
          Length = 471

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|282862163|ref|ZP_06271226.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282563188|gb|EFB68727.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 573

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 89/476 (18%), Positives = 146/476 (30%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +          G V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 66  LGELAARLGA---APQESGDVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAASLGAV 122

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ +        +  +PV   +D  G + +LA     R  A +  I ITG+ GKTTT  
Sbjct: 123 AVLTDPAGAERAAATGVPVLVTEDPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 182

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L    ++   IG+    IG     +    P   D       M   G       + 
Sbjct: 183 LVEGGLRGAGRSTGLIGTVEMRIGDDRIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          +AV   ++P H+   SG+E+   AKA++      T         +
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPRRSRLGVVN 297

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F +    +        + +F    + D   R              + G   E +      
Sbjct: 298 FDDEYGRRLIDEASVPVVTFSAEGHPDADWRAADVEVGPQDSRFTVLGPKGERITARAPL 357

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+  TL  +  L         A        G   R         +  + +  +   
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQTAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
               A  SVL  +    EGR   VLG     G+   +    +    +    + V  S   
Sbjct: 415 -KTDAVESVLRSLRKVTEGRVHIVLG---CGGDRDVTKRGPMGAAAARLADTAVLTSDNP 470

Query: 409 --FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451
                LA+  A+              +              +    GD V+V  K 
Sbjct: 471 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 526


>gi|163794522|ref|ZP_02188493.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
 gi|159180246|gb|EDP64769.1| UDP-N-acetylmuramyl tripeptide synthase [alpha proteobacterium
           BAL199]
          Length = 479

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 91/455 (20%), Positives = 155/455 (34%), Gaps = 33/455 (7%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V G++ DSR + P   F A+ G   DG  +I  A+ +GA  V+   D  A I
Sbjct: 5   VIGGADPDVAGMTADSREVRPGWLFAALPGHKLDGRRYIDDALGRGACAVLTTPDSEARI 64

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---- 134
           G   +P+    D    L ++A         T++A+TG+ GKT+  E      +       
Sbjct: 65  GGR-VPLVMDTDPRRRLARMAARFYAAQPETVVAVTGTNGKTSVAEFTRQIWALTGQRSA 123

Query: 135 -------KTYACIGSYNNHIGVPLTLARMPVD-VDFGIFE--LGMSHLGEIRFLTHLVRP 184
                           +     P+ L  +  D  + G+    +  S  G  +     VR 
Sbjct: 124 SLGTLGLMVDGKPEGPSLTTPDPIRLHAVLKDLAERGVTHAAMEASSHGLHQSRLDGVRI 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A  T +   HL     ++    AK  +FE + +T    +   DS      A +     
Sbjct: 184 KAAAFTNLTRDHLDYHGSMDAYRVAKLALFERVMETAGTAVLNIDSAEYQSFASAAGRRG 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I S+G+   A+ +L       +   +++ + G++  V    +G   A N L  LG+  
Sbjct: 244 HRILSYGRRPGAELRLASRVARPDGQLLDLIVFGRARTVELPLVGDFQAWNALAALGLAI 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D A  ALS      GR +R     N      +D ++  +         VL+ I 
Sbjct: 304 ATGTPDDQATAALSRLAGVRGRMERVAVLANGA-AIYVDYAHTPDALET-----VLNAIR 357

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
           PH  G+   V G     G         +   +         ++           ++ A  
Sbjct: 358 PHTTGKLWCVFG----CGGDRDPGKRPMMGCMVGKLADKPIVTDDNPRSEDPATIRAAAL 413

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +                  S L  GDV+++  K 
Sbjct: 414 AACPGGEEIGDRAEAIRSAVSRLGPGDVLMIAGKG 448


>gi|300949897|ref|ZP_07163860.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|300955951|ref|ZP_07168284.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|301646397|ref|ZP_07246279.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|312970179|ref|ZP_07784361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|300317171|gb|EFJ66955.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 175-1]
 gi|300450729|gb|EFK14349.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 116-1]
 gi|301075367|gb|EFK90173.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 146-1]
 gi|310337677|gb|EFQ02788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 1827-70]
 gi|315616136|gb|EFU96755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli 3431]
 gi|323171248|gb|EFZ56896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|325496021|gb|EGC93880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Escherichia fergusonii ECD227]
          Length = 471

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|283458383|ref|YP_003363007.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
 gi|283134422|dbj|BAI65187.1| UDP-N-acetylmuramyl tripeptide synthase [Rothia mucilaginosa DY-18]
          Length = 607

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/465 (13%), Positives = 131/465 (28%), Gaps = 57/465 (12%)

Query: 7   FHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
             + LQ +                      V GIS+DSR + PQ+ + A+ G    G  F
Sbjct: 59  LREYLQGLGAQVSAQPASGVQGSESGESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQF 118

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAI 113
              A++ GA  ++ +      +G   +PV   +++   +  LA      +        A+
Sbjct: 119 AEAALKLGASAILTDAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAV 178

Query: 114 TGSVGKTTTKEMLTIALSS---------------IKKTYACIGSYNNHIGVPLTLARMPV 158
           TG+ GKTT+  ML     +               I                  +L  +  
Sbjct: 179 TGTNGKTTSTYMLESVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMG 238

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---- 214
                   + +S           V+  +A  T +   HL     +E    +KA++F    
Sbjct: 239 QHQVRCAAMEVSSHAIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFDSKAQLFTPER 298

Query: 215 -----------EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                       G +                L     A   +    FG    A  ++++ 
Sbjct: 299 AELAVITADDEWGEKMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQRE 358

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                        +                  +   +  +   +A+ +  +  L+     
Sbjct: 359 GLGHRFHVDNGAGESVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSAL 418

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     ++     ++D ++N +          L  +   G+G+ + V G   E   
Sbjct: 419 TPVVPGRMQLISLAPHAIVDFAHNPDG-----LTRALEAMDRPGDGKVMIVFGATGE--- 470

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIH 423
                   +   ++      V ++     G     ++ A+     
Sbjct: 471 -RDQLKRPIMGAIAAQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 514


>gi|166154480|ref|YP_001654598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|166155355|ref|YP_001653610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335740|ref|ZP_07223984.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2tet1]
 gi|165930468|emb|CAP03961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 434/Bu]
 gi|165931343|emb|CAP06915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 483

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 147/477 (30%), Gaps = 56/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D +     LA            +I ITG+ GKTT   
Sbjct: 63  AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSKHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           ++   +         IG+  + +G    +          + +              + +S
Sbjct: 119 LVRELMERSGIRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T I   HL     +EE  +AK + F  L + G   +N D  
Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +                 S+   + AD++  + K  S  S  ++  QGK        IG 
Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFPCETSLIGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L +L +V          +     F                  +      Y   P
Sbjct: 295 HNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399
            ++     +L Q+ P   GR I V G     G         L   +S +           
Sbjct: 351 DALDNVCRILLQLLPKY-GRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405

Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +         +      + H               S   D D+V+V  K 
Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455


>gi|332098132|gb|EGJ03105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 471

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIDSHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|158321043|ref|YP_001513550.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
 gi|158141242|gb|ABW19554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus oremlandii
           OhILAs]
          Length = 501

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 163/470 (34%), Gaps = 51/470 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             + G++ DSR +     F AI G   DG++FI  AVQKGA ++    D+          
Sbjct: 6   IEIKGVTSDSRQVKKGYIFVAITGEKEDGNNFIHEAVQKGAVMIYTENDVHIK----DCI 61

Query: 85  VFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V D    L  L          K  +I +TG+ GKTTT  ++   L    K    IG+
Sbjct: 62  VKKVPDCRKELGNLCNQFYGYPSDKLLVIGVTGTNGKTTTTNLIYHILKESGKKAGLIGT 121

Query: 143 YNNHIGVPLTLARMPVDVD--------FGIFE------LGMSHLGEIRFLTHLVRPHIAV 188
               IG     +++               + E      L +S  G      H +   IA+
Sbjct: 122 LFIKIGTKQYASKLTTPCTEDIYYYLNQMVEEGVTVAVLEVSSHGLKNNRVHGIDFDIAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLE-------KTGTIFLNYDDSFFELLKAKSHA 241
            T I   HL+    I +  ++K ++F+ L             +        + + A ++ 
Sbjct: 182 HTNINWDHLNFHKNINDYVNSKKKLFDSLSEGKVALINHDDQYGIKMLEGKKEILAITYG 241

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L  K+  +             +      +    V+++     V  + IG H   N L+ +
Sbjct: 242 LSSKSTVTASSIDFGFTTSFTYCLQRGITTLEGVEIEAFEYPVTSNLIGNHNIYNALLAI 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +L   +D  ++++  +   + R +             + + Y  NP+S +A  + +
Sbjct: 302 STCLLLNIPIDKIVQSIKNYPAVQRRMQII-----YRDKFTVIDDYCHNPSSYEAVFNAI 356

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-VLSLYNISHVWLSG--FHVLALKDA 417
             +  +       V G     G      + ++ +    + NI  + ++     +  +  A
Sbjct: 357 QNLQYNN---LHIVNGIRGNRGVHINKKNAEVLKQWYDILNIKKLVITDSTDFIDPMNSA 413

Query: 418 LPRSIHV------------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           L    ++             Y   +          L  GD++++  + S 
Sbjct: 414 LEEEKNICFEVFNSSAIPFQYERNLRDAIEEGIRDLRQGDILLLLGAQSM 463


>gi|296101248|ref|YP_003611394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055707|gb|ADF60445.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 495

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/478 (14%), Positives = 142/478 (29%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  + +DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPNAPERALREMVLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYNEPSDQLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT +++      + +T        N  +G                              
Sbjct: 121 TTTTQLMAQWAQLLGETGAVMGTVGNGLLGKVSPTENTTGSAVDVQHVIAGLAGQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  +F        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLFSTHHYGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAVEVNYHDSGATIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +       P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLALGYPMAELLNTAERLQPVCGRMEVFSAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALEAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEQFADIP 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  +      E              + DVV++  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 467


>gi|239931804|ref|ZP_04688757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291440173|ref|ZP_06579563.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
 gi|291343068|gb|EFE70024.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces ghanaensis ATCC 14672]
          Length = 515

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 152/484 (31%), Gaps = 53/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--LPAPERNAEVTGITHDSRAVRPGDLYAALPGARAHGADFVAQAAGLGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +      + +  +P   VDD    + +LAV            I ITG+ GKTTT  
Sbjct: 75  AVLTDPSGAERVAATGLPALVVDDPRARMGELAVTIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNN--HIGVPLTLARMPVDVDFGIFELG--------MSHLGE 174
           ++   L + + T    G         V + +    +  +    E          M   G 
Sbjct: 135 LVEGGLKTARGTDEGGGGRRVGLIGTVEMRIGEERIKSERTTPEATDLQALFAVMRERGT 194

Query: 175 IRFLTHLVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                 +                IAV T ++P H+   S +E+   AKA++F   E++  
Sbjct: 195 DAVAMEVSSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSDMEDYFRAKAQLFT-PERSRL 253

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  +        + ++    + D   R              + G   +
Sbjct: 254 GVVNVDDEYGRRLAKE----AGVPVVTYSAEGHPDADWRTEDVRVGPLDSSFTVIGPEDQ 309

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V          N+  TL  +  L A       A        G   R         +  +
Sbjct: 310 RVAARSPLPGPFNVANTLAAIVALAAAGLDPQAAADGVAAVPGVPGRLERVDAGQPYLAV 369

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +       A  SVL  +    EGR   VLG     G+   +    +    +    +
Sbjct: 370 VDYAH----KTDAVESVLRTLRRVTEGRVHVVLG---CGGDRDITKRAPMGAAAARLADT 422

Query: 403 HVWLSG----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V  S        LA+   + +            V   E          +    GD V+V
Sbjct: 423 AVLTSDNPRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLV 482

Query: 450 --KS 451
             K 
Sbjct: 483 AGKG 486


>gi|58698291|ref|ZP_00373208.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58535164|gb|EAL59246.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 122

 Score =  118 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           W  ++++ A  G  +        + IS D+RSI   + F A+KG ++DGH+F+  A  KG
Sbjct: 4   WNTNNIIDATGGRDVNGCNWIHSSNISTDTRSIKKGDLFIALKGKNFDGHNFLHEAFLKG 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTT 122
           A   +V+          S P+  V D L AL+ +A          A +IA+TGSVGK   
Sbjct: 64  AVAAIVSEGKYK-----SFPLMIVQDTLKALHDMASYYIRNVLIDAKVIAVTGSVGKPLQ 118

Query: 123 KEML 126
           +   
Sbjct: 119 RICC 122


>gi|218245162|ref|YP_002370533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 8801]
 gi|218165640|gb|ACK64377.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 8801]
          Length = 501

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 46/474 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  ++             Q  V G+  +S +    + F  + G   DG  F   A++ GA
Sbjct: 13  TIQEI-------PPHPSLQREVKGLCTNSHACQQGDLFIGMPGTRVDGGQFWTSALEAGA 65

Query: 66  GLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              ++  +  A       + V   +D++    +LA A       +  +I +TG+ GKTTT
Sbjct: 66  VAAIITPEAAAHFPPTPDVCVIIAEDMISVSAQLATAFYNYPTQQLKMIGVTGTNGKTTT 125

Query: 123 KEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             ++   L+  +              G             ++   +   +        + 
Sbjct: 126 THLIEFFLTQSQYPTALLGTLYTRWQGFQQTATHTTPFAVQLQEQLAQAVDAGNHYCVME 185

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +      +  +AV + +   HL     +E+  SAK+ +F          +N D
Sbjct: 186 VSSHALAQGRVKGCQFEVAVFSNLTQDHLDYHRDMEDYFSAKSLLFSPDYLAKRAIINLD 245

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D++ + L         +         +ADF        +      +     ++      +
Sbjct: 246 DAYGQRLIQ--GLDKGQVWSYSVSDPSADFYTSDLTYQATGVGGTLHTPQGTIPFTSPLV 303

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L  +  V  L  D++  I  L  F    GR +R + +  Q    ++D ++  
Sbjct: 304 GQFNLSNLLAAVATVVHLGLDLNQIINQLPQFMGVPGRMERVQISDQQEISVIVDYAHTP 363

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        ++L    P   G+ I V G     G         L   +S        ++ 
Sbjct: 364 DSLE-----NLLKAARPFIPGQMICVFG----CGGDRDRTKRPLMGQISAKLADVSVVTS 414

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   +P  ++                    GD V++  K 
Sbjct: 415 DNPRTEDPQQILEDILAGIPEGVNPMVISDRALAIDQAIQQAQPGDGVLIAGKG 468


>gi|327255063|gb|EGE66666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 471

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV++  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLIAGKG 443


>gi|237802692|ref|YP_002887886.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
 gi|231273926|emb|CAX10718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 483

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LLQ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLQNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D +     LA            +I ITG+ GKTT   
Sbjct: 63  AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           ++   +    +    IG+  + +G    +          + +              + +S
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIIDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T I   HL     +EE  +AK + F  L + G   +N D  
Sbjct: 179 SIGMALGRVRETEFLAGVLTNIISDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +                 S+   + AD++  + K  S  S  ++  QG+        IG 
Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGQVFPCETSLIGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L +L +V          +     F                  +      Y   P
Sbjct: 295 HNVYNVLASLAVVHQFLGRDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399
            ++     +L Q+ P  +GR I V G     G         L   +S +           
Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405

Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +         +      + H               S   D D+V+V  K 
Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455


>gi|182433979|ref|YP_001821698.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178462495|dbj|BAG17015.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 491

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 146/483 (30%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLIAGQDHHALRGTPDRTNVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+        ++  + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDEQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163
           T+   M    L   ++                      S  +    P     +    D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L  + +G +          + V T +   HL +   +E    AK  +F+G     
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++            ++    +AD++       +  S   +   G+  
Sbjct: 239 RAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLAVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R +          
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPGGTSVIVD 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S  +   VL+ I     GR I V G     G    +        ++  + 
Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403

Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               L+  +        + D + + I                           DVV++  
Sbjct: 404 DLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALGEAGPDDVVLIAG 463

Query: 450 KSS 452
           K S
Sbjct: 464 KGS 466


>gi|212712752|ref|ZP_03320880.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
 gi|212684668|gb|EEB44196.1| hypothetical protein PROVALCAL_03849 [Providencia alcalifaciens DSM
           30120]
          Length = 495

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 142/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+KG   DG  +I  A+ +G   V+      A  G +     +PV 
Sbjct: 26  TLDSRKAAAGDLFIAVKGHQSDGRHYIPQAIAQGVSAVIAEAHGEAEEGEIRFVHGVPVI 85

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            ++D+   L+ LA     +      ++ +TG+ GKTTT +++      + + +       
Sbjct: 86  YLNDLNNRLSALAGEFYHQPSSQMKLVGVTGTNGKTTTTQLIAQWAKGLGETSAVMGTVG 145

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                 E             + +S  G ++     ++   AV T
Sbjct: 146 NGILGHVSPSENTTGSAVDIQLELTQLLNKKATLTAMEVSSHGLVQGRVAALQFDAAVFT 205

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F        I    D+   + L+    A  +    S 
Sbjct: 206 NLSRDHLDYHGDMANYEAAKWLLFSTHHTKTQIINADDEVGLKWLQRLPQACAVTMEDSI 265

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +    + +        + + +       +       +G     N+L+ +  + ++   
Sbjct: 266 PANWQGPWLKTTDVDYHDKGATIHFASTWGNGSFESPLMGAFNVSNLLLAMATLLMMDYP 325

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  +   +   P  GR + +              + +A           L+    H +G
Sbjct: 326 LEKLLATTNALMPVCGRMEVFSVTGKPTVVVDYAHTPDA-------LEKALAAARLHCKG 378

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L    +      V ++  +            +   +  
Sbjct: 379 KLWCVFG----CGGDRDKGKRPLMGASAEQYADKVVITDDNPRSEDPLDIINDIMAGILD 434

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S  V                    DV++V  K 
Sbjct: 435 SSRVLAIPGRPEAVTNTILQAHPDDVILVAGKG 467


>gi|90411494|ref|ZP_01219505.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
 gi|90327707|gb|EAS44050.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Photobacterium profundum 3TCK]
          Length = 487

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 153/457 (33%), Gaps = 41/457 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            Q  +    I+S  + P + F   +G  +D H ++  A++ GA  V+ N         L 
Sbjct: 14  EQLPIRQFVINSEWVQPNDVFICREGASHDSHSYVDQAIKNGAIAVIANR-----TLHLD 68

Query: 83  IPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           IPV   +    +L  + AV      K   I +TG+ GKTT    L   L+    +     
Sbjct: 69  IPVIVTESHYQSLAVVKAVYDHPHQKMNHIGVTGTNGKTTVAHCLNQMLNQSSTSAYIGT 128

Query: 142 SYNNHIGVPLTLARMPVD-----------VDFGIFE--LGMSHLGEIRFLTHLVRPHIAV 188
               +  V + L+    D           V+ G+    + +S     +     +   + +
Sbjct: 129 LGVQYADVIMALSNTTPDGVTLLNIFRDMVECGVKHNVMELSSHALAQDRAGFLDLEVGI 188

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   HL      +    AK +I + ++  G   +N DD     + A+ H       +
Sbjct: 189 ITNIGRDHLDYHRTKDAYVQAKLQIIDRIKPGGYAVINMDDPHAPAMFARCHGRVKTVSF 248

Query: 249 S--FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           S  +  + N D      +  S Q      L  +  + +       +     M     ++ 
Sbjct: 249 SIHYKDTHNQDADFVAKEIVSNQFGCSFSLCYRGKQRLVCSQMPFLFNVENMLAMACALH 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                    A  +       G+     LN G   L+D ++N +  +      + S I   
Sbjct: 309 AQGWTLDQIASGLTTIIPPDGRAQFQTLNNGATGLVDYAHNLDGLA-----RLFSDIPNQ 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSI 422
                + V+G   +  + + +    + E+ + Y+   V+      G     +  AL   I
Sbjct: 364 TFRHTLTVVGVTGDRIQDAAA----IGELCARYSDLVVFTMDNPLGIDQADIFRALTSRI 419

Query: 423 H-----VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
                 V             +     GD++VV  K S
Sbjct: 420 ESVSTPVFTIADRSEAISLAKQMSQKGDLIVVCGKGS 456


>gi|323157848|gb|EFZ43951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli EPECa14]
          Length = 471

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVTAIIAEAKGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|296448268|ref|ZP_06890162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
 gi|296254220|gb|EFH01353.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylosinus
           trichosporium OB3b]
          Length = 483

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 86/469 (18%), Positives = 156/469 (33%), Gaps = 44/469 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q +   +   +    + G++ DSR +    AFFA+ G   DG  +   A  +GA +VV
Sbjct: 3   LSQLLGEAATAGLGDLDIAGVTADSREVRTGYAFFAVPGHAGDGLGYAADARARGASVVV 62

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                      +S+P+  V DV  +L   A     R    + A+TG+ GK++  + L   
Sbjct: 63  APRA-----AEVSLPLVVVPDVRASLAHAAARFYPRQPRIVAAVTGTSGKSSVVDFLRQI 117

Query: 130 LSS------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEI 175
             +            +              G       +      G+    +  S LG  
Sbjct: 118 WIALGREAASLGTIGLIDKSGAHYGALTTPGPVALHQTLDELCAGGVTHLAMEASSLGID 177

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     VR  +   T  +  HL +   +EE  +AK  +F+ L +TG   +   DS     
Sbjct: 178 QRRLDGVRLCVGAFTNFSRDHLDHHRDLEEYFAAKMRLFDTLLQTGQTAVIDADSAVAER 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A   A     ++  G    A  +L      +  + + ++  G++ +V     G     N
Sbjct: 238 VAAVCAARGLALFDVGAKGRA-IELLSVAPSALATRLTLRHAGETYDVDLPLAGGFQISN 296

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L++ G+             AL+      GR +          F      Y   P ++  
Sbjct: 297 ALVSAGMAIASGEAPGRVFAALASLRGAPGRLELIGQRDGAPVFVD----YAHKPDALDK 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
            ++   +++   +GR + V G     G         L   ++      V ++  +  +  
Sbjct: 353 VLATARELA---KGRLVVVFGA----GGDRDKGKRPLMGEIAARAADIVVVTDDNPRSEE 405

Query: 414 ---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                           S  +H             S L DGD ++V  K 
Sbjct: 406 PAMIRAAIVAAARAAGSAQIHEIGDRRAAIETAISWLRDGDALIVAGKG 454


>gi|222112154|ref|YP_002554418.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Acidovorax ebreus TPSY]
 gi|221731598|gb|ACM34418.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax ebreus TPSY]
          Length = 501

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 153/486 (31%), Gaps = 51/486 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN L T   L +A+         +  V G +  DSR I P + F A  G   DG   +  
Sbjct: 1   MNALHTLTTLQEAV------DWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGD 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           AV +GA   +V  + V         +  +  +  A   +A         +  ++A+TG+ 
Sbjct: 55  AVARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTN 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164
           GKT+T   L  AL+ + K      +         +GVP  L    +     +        
Sbjct: 115 GKTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQ 174

Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                     +  S +G         R H+A+ T     HL    G+     AK  +F+ 
Sbjct: 175 FAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                ++    D     L            ++S      A  Q +            V  
Sbjct: 235 PGLRASVVNVDDPQGAALHAE--LQGSDLDLWSVSLQGPARLQAKHIVHTGAGLAFTVAE 292

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    IG +   N+L  +  +  L   +  A++A +   P  GR ++   A   
Sbjct: 293 GAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQP 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                    Y   P ++  A++ L  ++    GR   V G     G    +    L   +
Sbjct: 353 LVAVD----YAHTPDALHQALAALKPVAAQRGGRLWCVFG----CGGNRDAGKRPLMGAV 404

Query: 397 SLYNISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++     G    ++   +         V              +     DVV
Sbjct: 405 AQREADEVIVTSDNPRGEEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALADAGANDVV 464

Query: 448 VV--KS 451
           ++  K 
Sbjct: 465 LIAGKG 470


>gi|270263954|ref|ZP_06192222.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
 gi|270042147|gb|EFA15243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Serratia odorifera 4Rx13]
          Length = 471

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 140/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+   +  A  G++     +PV 
Sbjct: 2   TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGQAEDGAITEMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA     +   +  ++ +TG+ GKTTT ++L      + +         
Sbjct: 62  YLSQLNQRLSALAGRFYHQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETGAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                               + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVCPTENTTGSAVDVQHVLNELVDRGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F G E    I    D+     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGDMANYEAAKWSLFAGHEVGQAIINADDEVGQRWLSKLPDAVAVTMQDNL 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 QLGCHGRWLKTTAVSYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +D  ++  +   P  GR + +              + +A           L     H +G
Sbjct: 302 LDKLVETGNQLQPVCGRMEVFNAPGKPTVVVDYAHTPDA-------LEKALEAARLHCQG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                     + DVV+V  K 
Sbjct: 411 AGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 443


>gi|255348629|ref|ZP_05380636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70]
 gi|255503169|ref|ZP_05381559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis 70s]
 gi|255506847|ref|ZP_05382486.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis D(s)2923]
 gi|289525308|emb|CBJ14784.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Chlamydia trachomatis Sweden2]
 gi|296434858|gb|ADH17036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/150]
 gi|296438578|gb|ADH20731.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia trachomatis E/11023]
          Length = 483

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 149/477 (31%), Gaps = 56/477 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR +   + F A +G   +G+D+   AV  GA 
Sbjct: 3   LDQLLRNIPAKIYGKVESIPVRNLTRDSRCVGVGDIFIARQGQFCNGNDYSSQAVANGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +         LS+     +D +     LA            +I ITG+ GKTT   
Sbjct: 63  AVLSS----LYNPFLSVVQIIAEDPIALEASLAARFYNNPSRHLDVIGITGTNGKTTVSC 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           ++   +    +    IG+  + +G    +          + +              + +S
Sbjct: 119 LVRELMERSGRRTGLIGTIEHILGENRIVDSFTTPDAILLQKYFAEMVKQNLSAAVMEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T I   HL     +EE  +AK + F  L + G   +N D  
Sbjct: 179 SIGMALGRVRETEFLAGVLTNITSDHLDFHGSLEEYIAAKKQFFASLPEKGIAVVNLDCE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +                 S+   + AD++  + K  S  S  ++  QGK        IG 
Sbjct: 239 YAPSFL----NGSQARAVSYAIHQEADYRADRLKLYSSGSSYDIWYQGKVFLCETSLIGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L +L +V          +     F                  +      Y   P
Sbjct: 295 HNVYNVLASLAVVHQFLGGDFADLVRDVRFLSAPKGRLDPILLGPFPVYID----YAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------- 399
            ++     +L Q+ P  +GR I V G     G         L   +S +           
Sbjct: 351 DALDNVCRILLQLLPK-DGRLIIVFG----CGGDRDRVKRPLMAKVSEHYGFSFVTSDNP 405

Query: 400 ---NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   +         +      + H               S   D D+V+V  K 
Sbjct: 406 RTEDPDQII------ADICKGFS-TDHYVVESDRKLAIEKAISMASDKDIVLVAGKG 455


>gi|65319894|ref|ZP_00392853.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 391

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 127/381 (33%), Gaps = 41/381 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAVQKGAGLVVVNTDMV 75
                 + G+ +DSR I     F  + G   DG     H F+  AV+ GA  ++V  D+ 
Sbjct: 7   GDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVEDAVKNGAVALIVERDV- 63

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
               ++ IP   V D   A+  +A        +K  +I ITG+ GKTTT  +L   LS  
Sbjct: 64  ----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGKTTTSYLLEKILSDY 119

Query: 134 KKTYACIGSYNNHIGVPLT----------------LARMPVDVDFGIFELGMSHLGEIRF 177
                 +G+    +G                          + D+ + E+    L   R 
Sbjct: 120 GYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYCVMEVTSQGLHMERV 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGLEKTGTIFLNYDDSFFELL 235
                +  IAV T +   HL      +E    K+      G   +         +  +  
Sbjct: 180 KGCNFK--IAVFTNLTQDHLDYHGTFDEYKHVKSLLFARLGNNLSTIDKKIAVLNADDPS 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                 +    + ++G    AD Q +      +     V      +EV  + +G     N
Sbjct: 238 VEYFKKITSAEVITYGIHNGADVQAKNITLSPKGIRFLVSSFNGEIEVSLNLVGRFNVYN 297

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +    +     +LS     EGR +      +         + +A       
Sbjct: 298 ALAAITVALVEGIPLTNISDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDA------- 350

Query: 356 AISVLSQISPHGEGRRIAVLG 376
             +VLS I    +G+ I V G
Sbjct: 351 LENVLSTIREFAKGKIITVFG 371


>gi|315658662|ref|ZP_07911532.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
 gi|315496293|gb|EFU84618.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus lugdunensis M23590]
          Length = 494

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 145/475 (30%), Gaps = 42/475 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + I+   +       V  I+ DSR+      F A KG   D H F    + +G
Sbjct: 1   MNASTLFEKIRVKQVIGTLDRHVTDITTDSRTAKSGSIFVASKGYTVDSHKFCQDVINQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTT 122
             ++VV            +    V + L   + LA         + T   +TG+ GKT+ 
Sbjct: 61  CQIIVV---KSKQEVEGDVTQIIVSETLRVASLLAHTLFDFPSHQLTTYGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    + K         +                  +   +   +        + 
Sbjct: 118 ATMIHLIYRKLHKNSAYLGTNGFQINEQKTKGANTTPETVSLTKKIKEAVDAGAEAMTME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G        V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLALGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +       ++    I+++G   +A F+     +  +    E+     +  V    +
Sbjct: 238 LNNDDAFSEYLASVTPYEIFTYGIDNDAQFKAIHINESLQGVTFELDTPFGNYNVQSPYV 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N++  +  V       +T ++A+    P EGR +     L          + + 
Sbjct: 298 GKFNISNLMAAMIAVWSKGIPFETIVEAVKTLEPVEGRLEVLDPNLPIDLIIDYAHTADG 357

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     ++  + P  + + I ++G M   GE   +   ++  V       +V  + 
Sbjct: 358 -------MNKLIDAVKPFVKRKLIFLVG-MA--GERDLTKTPEMGTVACRA--DYVIFTP 405

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            +            L        +V   E                D VV+ +S  
Sbjct: 406 DNPANDDPKMLTSELAKGATHDNYVE-FEDRAEGIRHAIEVAEPEDTVVL-ASKG 458


>gi|300984507|ref|ZP_07176999.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
 gi|300306676|gb|EFJ61196.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 200-1]
          Length = 471

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSSVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    E              + DVV+V  K 
Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|294635004|ref|ZP_06713521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
 gi|291091603|gb|EFE24164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda ATCC 23685]
          Length = 495

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 149/474 (31%), Gaps = 45/474 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    +   P+  +  +++DSR  A  + F A+ G   DG  FI  A+ +G   ++ 
Sbjct: 6   LRALLAPWVQQAPERALREMTLDSRVAAAGDLFVAVVGHSADGRRFIPQAIAQGVAAIIA 65

Query: 71  NTDMVASIG----SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             D VA  G       +PV  +  +   L+ LA     +      +I +TG+ GKTTT +
Sbjct: 66  EADGVAEDGCVREQHGVPVVYLSRLNERLSALAGRFYGQPGDDVQLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALS---------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +L                     + + Y    +  + + V   L  +  +    +  + +
Sbjct: 126 LLAQWAQLLGERGAVMGTVGNGLLGQVYPSENTTGSAVDVQHMLRNLADEGATLVA-MEV 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G ++     +    +V T ++  HL     + +   AK  +F        I    D+
Sbjct: 185 SSHGLVQNRVLALPFVASVFTNLSRDHLDYHGDMAQYEQAKWRLFSTHHSGEKIINADDE 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L     A+ +    +  ++    +   +     +               +H  + 
Sbjct: 245 VGQRWLAKLPDAVAVTLADALPQAWPGRWLAARRVDYHDGGATIDIDSSWGCATLHSRLM 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNA 348
                + L+      +       A+ A+S    P  GR + ++ A           + +A
Sbjct: 305 GEFNVSNLLVALATLLALGYPLEALSAVSGQLQPVCGRMEVFQAAGKPTVVVDYAHTPDA 364

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L     H +G+   + G     G    +    L   ++      V ++ 
Sbjct: 365 -------LEKALLAARLHCQGQLWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTD 413

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +   +     V                    DV++V  K 
Sbjct: 414 DNPRSEEPRTIINDILSGMLDPGMVQAIPGRAEAVTAAIMQAAPQDVILVAGKG 467


>gi|237654089|ref|YP_002890403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
 gi|237625336|gb|ACR02026.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thauera sp. MZ1T]
          Length = 498

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 74/451 (16%), Positives = 138/451 (30%), Gaps = 35/451 (7%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ DSR   P   F A  G   DG  F+  AV  GA  ++          +L++P FGV 
Sbjct: 20  ITADSRKAGPGCVFAAWPGQRTDGRRFLADAVVHGAAALLWEDGDGFCAPALAVPGFGVR 79

Query: 90  DVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +      LA     R      +  +TG+ GKTT  +ML  AL  + +    +G+     
Sbjct: 80  GLRELAGHLAHELHGRPSQSLWLAGVTGTNGKTTVSQMLARALGELGERCGIVGTLGCGF 139

Query: 148 G-------------VPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                         + L            +   + +S +G  +   +  +  +A+ T ++
Sbjct: 140 PDALEEGLNTTPDALELQRWFARFRNQGAVAAAMEVSSIGLDQGRVNGAQFDVAIFTNLS 199

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  A+AKA +FE   +     +N DD +   L  +    G   I     +
Sbjct: 200 RDHLDYHGTMEAYAAAKARLFER-PELSACVINIDDPWGLALARRLVVEGRAVIACTLYA 258

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            NAD         +++          ++          +       +  +  +   +   
Sbjct: 259 ANADAVPGARVLRADRLQAAPAGLRFTLVWEGREAEIGVRMVAHFNVSNLIAVAGALLAR 318

Query: 314 IKALSVFHPK----EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             A     P          R +         ++ + Y  +P ++   +  L        G
Sbjct: 319 GIAFDELPPVLGRLAPPQGRMQLVGGVCEPLVVID-YAHSPDALAKVLEALRGTVHSRRG 377

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD--ALPRSI 422
           R + V G     G         +   ++      V ++           + +  A     
Sbjct: 378 RLVCVFG----CGGDRDPGKRPMMGEIASAIADRVVITSDNPRSEDPQRIVEAIAAGAGA 433

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                 DVV++  K 
Sbjct: 434 AAECVVDRAQAITRAVGEARADDVVLIAGKG 464


>gi|317154469|ref|YP_004122517.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944720|gb|ADU63771.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 506

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 89/458 (19%), Positives = 150/458 (32%), Gaps = 48/458 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV---NTDMVASIGSLSIPVF 86
           +  DSR I P E F A+ G H  G D+I  A+ KGA  VV      D+VA          
Sbjct: 33  VRTDSRKILPGECFVAMPGTHVRGIDYIPAALDKGAQYVVAPASARDLVAPAVEKRALAV 92

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             D+   AL  LA A    +     ++ ITG+ GKTTT  ++   L++       +G+ N
Sbjct: 93  YHDNPAVALGLLARAHFHLTDRDLKLVGITGTNGKTTTSYIIEHLLAATGIKVGVLGTVN 152

Query: 145 NHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVIT 190
                 +  A +     + I E              + +S     ++    +    AV+T
Sbjct: 153 YRWPGFVMDAPLTTPDCWMIHELLYNMKKADVDVAVMEVSSHALDQYRVAGLDFDAAVLT 212

Query: 191 TIAPAHLSNFSGIEEIASAKAE-IFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGI 244
            +   HL     +E    AK       L       +N++D +   L         + +G 
Sbjct: 213 NVTQDHLDYHGDMETYFQAKTRLFSTYLRPGRAGVINFNDPYGRRLLTSTEGGIGYGIGD 272

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            ++ +         Q R      +   +E   +GKS  V    IG   A N+L    +  
Sbjct: 273 SSLVTHEVGDKPMVQGRILSLTGQGMQIETSYKGKSWVVESPLIGAFNAMNLLAAQAVGL 332

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +         +       G+  R   +QG    +D ++  +        +V   + 
Sbjct: 333 QLGLNCKDMCV---LKDFPGVPGRLERVINDQGLDIFVDYAHTPDALE-----NVQHTLK 384

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALK 415
                R I V G     G         L             L+  +         +   +
Sbjct: 385 SLDFKRLITVFG----CGGDRDRAKRPLMAKAVARYADVAVLTSDNPRSEKPEAIMDDAR 440

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L R+  V              + +  GDV+++  K 
Sbjct: 441 PGLARAAVVLEHPDRQTAITMAVAGMQPGDVLLIAGKG 478


>gi|239940575|ref|ZP_04692512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|239987059|ref|ZP_04707723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 11379]
 gi|291444010|ref|ZP_06583400.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
 gi|291346957|gb|EFE73861.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces roseosporus NRRL 15998]
          Length = 522

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 144/476 (30%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G      V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LGELADRLGVETAGSGD---VTGITHDSRAVRPGDVYAALPGARMHGADFAAQAAGLGAV 73

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ +        +  +PV   ++    + +LA     R    +  I ITG+ GKTTT  
Sbjct: 74  AVLTDPTGAERAAATGLPVLVAENPRAVMGELAADIYGRPGIGLLQIGITGTSGKTTTAY 133

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L +  +    IG+    IG     +    P   D       M   G       + 
Sbjct: 134 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 193

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          +AV   ++P H+   SG+E+   AKA++F        +    D+ 
Sbjct: 194 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNFDDEY 253

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              L+           + +F    + D                    G   E +      
Sbjct: 254 GRRLITE-----SGVPVTTFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 308

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+  TL  +  L         A        G   R         +  + +  +   
Sbjct: 309 PGPFNVANTLAAIVTLAVAGVAPQIAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH--- 365

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
               A  SVL  +    EG+   VLG     G+   +    +    +    + V  S   
Sbjct: 366 -KTDAVESVLRSLRKVTEGKVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNP 421

Query: 409 --FHVLALKDALPRSIHVHYSETMDGLF---------LFIQSSLVDGDVVVV--KS 451
                LA+  A+              +              +    GD V+V  K 
Sbjct: 422 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 477


>gi|167772166|ref|ZP_02444219.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
 gi|167665964|gb|EDS10094.1| hypothetical protein ANACOL_03541 [Anaerotruncus colihominis DSM
           17241]
          Length = 483

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 156/478 (32%), Gaps = 56/478 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++LL  +            + G++ DSR + P   F  I+G   DGHD+ + A + G
Sbjct: 1   MRLYELLDGLDA--ARPDRDCEITGVTSDSRQVEPGTLFVCIRGTRADGHDYAVKAAEAG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++    +               D   A   +          +  ++ +TG+ GKTT 
Sbjct: 59  AAAILCERAIGLENE------IVCHDTHYAYGIVCGNWYGNPARRLRLVGVTGTNGKTTV 112

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L S       IG+ +N IG                  +         ++ + E
Sbjct: 113 SYMVKHILESAGHQTGLIGTIHNEIGDITLPAKHTTPDPLALHGMLARMADAGCEYVVME 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  + + L   +R      T +   HL     +E    AK ++F          +N
Sbjct: 173 -CSSHALDQQRL-AGLRFASVGFTNLTQDHLDYHGDMESYYHAKKKLF---SMCDAAAVN 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD++ E L A+   +   T +S   S  ADF  +  +   + S   +  +G    V   
Sbjct: 228 MDDAYGERLAAEVRHICPVTTFST-VSDAADFTAKDIRPAPDSSRFMIVGKGAIARVRLP 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N +    +   L   ++ A + L+      GR +      +           
Sbjct: 287 IPGDFSVANAMTAAVMCMALGLTLEQAAQGLNTCQGVVGRIEVLPTGTDYVVIRDYA--- 343

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                S      +++ +     GR + + G     G   ++    +AE+++  +   V L
Sbjct: 344 ----HSPDGLEKIITTMKKFARGRVVTLFG---CAGNRDRTKRKKMAEIVARLS-DFVIL 395

Query: 407 S------GFHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  ++DA P                     +        DV+++  K 
Sbjct: 396 TSDNPRDEDEMQIIEDAKPGLLEHPDTPYEIIPDRYAAIEWALGHAKKDDVLILAGKG 453


>gi|298293105|ref|YP_003695044.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
 gi|296929616|gb|ADH90425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Starkeya novella DSM
           506]
          Length = 495

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 150/472 (31%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L+           P   V   ++DSR     + FFA+ G   DG  F   AV +G
Sbjct: 15  LTLRELVGE-DADYALADPGLIVGEPALDSRKARAGDVFFALAGSKADGLSFARDAVARG 73

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              VV   +        S+    V +   A+   A  A  +   TI A+TG+ GKT+   
Sbjct: 74  VLAVVAEAERPPWFDP-SVSYVRVGNARRAVALAAARAFPKQPETIAAVTGTSGKTSVAA 132

Query: 125 MLTIALSSIKK---------TYACIGSYNNHIGVPLT---LARMPVDVDFGIFELG--MS 170
                 + +                G+    +  P        + +    G+  L    S
Sbjct: 133 FARQIWARLGHASASLGTLGVVTPSGAVYGSLTTPDPIELQRTLHMLAKEGVTHLCLEAS 192

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  ++    VR      T ++  HL     +E    AK  +F  L   G     + DS
Sbjct: 193 SHGLDQYRLDGVRLSAGGFTNLSRDHLDYHPSMEAYLDAKMRLFRELLPRGGGAAVWVDS 252

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                 A+  A     +   G    A   L           +EV+  G+   +    +G 
Sbjct: 253 TEGSHVAQVAADHELNVLGIG-VAGAGISLLARHDEGLGQLLEVEADGRRFTLRLPLVGA 311

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N L+  G+V +  A    A+ AL       GR +        G F     ++  + 
Sbjct: 312 FQACNALVAAGLVLLTGAGAREALLALETLEGVPGRLELVGTKDGAGVFVDY--AHKPDA 369

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +     + L  + P+  GR I V G     G         +   ++      V ++  +
Sbjct: 370 LA-----NALDALRPYATGRLIVVFG----CGGDRDRGKRPIMGAIAAEKADVVIVTDDN 420

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      A+ +A P +  +                   GDVV++  K 
Sbjct: 421 PRSEDPAFIRAAILEAAPEAQEI---GDRAEAIAAAIGMAKSGDVVLIAGKG 469


>gi|332768875|gb|EGJ99054.1| UDP-N-acetylmuramyl-tripeptide synthetase [Shigella flexneri
           2930-71]
          Length = 471

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|300981122|ref|ZP_07175368.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|301048477|ref|ZP_07195502.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300299663|gb|EFJ56048.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 185-1]
 gi|300409024|gb|EFJ92562.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 45-1]
 gi|315294720|gb|EFU54063.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 153-1]
          Length = 471

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEPSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    E              + DVV+V  K 
Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|167752868|ref|ZP_02424995.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
 gi|167659937|gb|EDS04067.1| hypothetical protein ALIPUT_01130 [Alistipes putredinis DSM 17216]
          Length = 486

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 95/474 (20%), Positives = 172/474 (36%), Gaps = 44/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    +L++A Q   +       V+ ++ DSR IAP + FFA+ G   DGH +I  AV  
Sbjct: 1   MKQIQELIKATQVLRVEGNSDTRVSRLAYDSRRIAPGDCFFAVSGTQSDGHAYIDAAVTA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA  VV     +    + S+    V D   A+  +A A       +  ++ ITG+ GKTT
Sbjct: 61  GAAAVVCQR--LPEHLAPSVCYVVVADTNAAMADMAAAFYGDPSRQLKLVGITGTNGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFEL 167
           T  +L      +      I +    I                   +    V+       +
Sbjct: 119 TVTLLYDLFRGLGYKVGLISTVVYRIDTERIESTHTTPDAIRLNEMMARMVEAGCEYCFM 178

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +     + + I   HL       E   AK   F+ L K     +N 
Sbjct: 179 EVSSHAIVQERIRGLHFTGGIFSNITHDHLDYHKTFAEYIRAKKLFFDNLPKEAFALINI 238

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD    ++   + A    T+ +      ADF+ +  +   +     ++L+    EV  H 
Sbjct: 239 DDRNGRVMVQNTRA----TVKTLSLQSMADFRCKILETHPDG----MELRIDGREVWVHF 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G   A N+L       +L AD +  ++ +S  HP  GR +  R A      T     Y 
Sbjct: 291 LGRFNAYNLLCVYAAALLLGADREEVLQIMSTLHPVSGRFEFVRAADG----TTAIVDYA 346

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  + +I     G+++ VL      G+  ++   ++A++   Y  + +  S
Sbjct: 347 HTPDALEKVLQTVEEIR--RPGQQLFVLCGCG--GDRDKTKRPEMAQIAVKYATTAILTS 402

Query: 408 G----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+ D     L                         GD++++  K 
Sbjct: 403 DNPRHEDPDAILDDMVAGLAPGDRYLRIADRAEAIRTAAMLAKPGDILLLAGKG 456


>gi|241668971|ref|ZP_04756549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254877503|ref|ZP_05250213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
 gi|254843524|gb|EET21938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25015]
          Length = 512

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 62/490 (12%), Positives = 159/490 (32%), Gaps = 49/490 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGLSNDGNKYIDSVLAK 59

Query: 64  GAGLVVVNT-DMVASIGSLSIP------VFGVDDVLGALNKLAVAARL-RSKATIIAITG 115
           G  L++ +     +SI + S+       +F V+++   L+ LA      +    II ITG
Sbjct: 60  GTKLILSDKLPRQSSIATSSVAEGELPNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119

Query: 116 SVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161
           + GKT+    +                  +         ++     +          +  
Sbjct: 120 TNGKTSISSYIAQLQKLIGQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISYYKNYQ 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+  S     +  T  +   IAV + ++  HL     ++    AKA++F+      
Sbjct: 180 NLVMEV--SSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQFRSLKK 237

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +    D+   +L +  + +   +   +     +  + +       +    ++ ++ KS+
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSRRADIYIESKSI 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E +      +++Q  + T     +   ++     +L+       R +             
Sbjct: 298 ENMQTSFDLYISQKYMGTYQTSLVGEFNLMNLGLSLAALDDSSTREQLLENISKLKPVKG 357

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             E       +                L  +  +       + G     G    +    +
Sbjct: 358 RMEVIALVNGAKIIIDYAHTPDALEKALQTLVNYHPNNLWCIFG----CGGNRDTTKRPI 413

Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              ++    S + ++  +            +K          + ++ +    +   +   
Sbjct: 414 MAQIAEEYASKIVITEDNNRFESIESIFDDIKKGFSHPDKHTFIDSREEAIKYTIENSKA 473

Query: 444 GDVVVV--KS 451
            DV+++  K 
Sbjct: 474 NDVILLAGKG 483


>gi|169826984|ref|YP_001697142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
 gi|168991472|gb|ACA39012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lysinibacillus sphaericus C3-41]
          Length = 476

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/466 (16%), Positives = 147/466 (31%), Gaps = 58/466 (12%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G   +  + G+   ++++ P + F   KG    G  F+  A+ +GA  +V    +   I 
Sbjct: 3   GGSIRTEITGVEDYAQAVQPGDIFIVRKGKKTSGSRFVKEALARGAAAIVSEESISLPII 62

Query: 80  SLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
              IP   V +    L     KLA         ++IAITG+ GKTT    ++  L+++ K
Sbjct: 63  DKEIPFVWVPNTALFLSYASAKLAA--FPAEALSVIAITGTNGKTTVSHFVSQLLNALHK 120

Query: 136 TYACIGSYNNHIG-------------------VPLTLARMPVDVDFGIFELGMSHLGEIR 176
             A IG+   ++                     P+    +   V   + E   S +G  +
Sbjct: 121 KAAVIGTIGFYLDGEKQQTSYEQLTTLQAKELHPILKQCVRKGVSHVVLE--ASSMGLQQ 178

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                      V   ++  HL +  G+E    AK  + +  +K      +       +  
Sbjct: 179 HRLDHCDIDCGVFLNLSEDHLEDHGGLEAYKRAKKRLADLSKKLVLNGDDNFCRSVGIYD 238

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K          SFG   + D  ++   +   ++ + +Q       V    +G +  QN 
Sbjct: 239 KK-------KSCSFGFDNHNDLHIQIVSETVGKTVLCLQTSASEHIVEIPFVGKYHVQNT 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L  V  L   +D  I+ +      EGR ++    +    +      Y     +++A 
Sbjct: 292 VAALMAVWRLGIPIDDIIEHMWSLKLPEGRLEKIDNPVGIDVYVD----YAHTAEALQAV 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--- 413
           +                V       G             ++      ++L+  +      
Sbjct: 348 LQTFD-----RSKTIYLVFS----CGGNRDKAKRFAMGAVASKYADVIYLTTDNPRDEDP 398

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +        +               +    GD+V+V  K 
Sbjct: 399 IIINESIIAGFTEQQYYEIYLDRKVAIHQALAKAKKGDIVLVAGKG 444


>gi|167630123|ref|YP_001680622.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
 gi|167592863|gb|ABZ84611.1| udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Heliobacterium modesticaldum Ice1]
          Length = 544

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 151/489 (30%), Gaps = 67/489 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L  A     +       ++G++ DSR + P   FF + G   DGH F   AV +GA  +V
Sbjct: 44  LAVAAGEKLLFG---QKISGLAYDSRRVQPGFLFFCVPGQKTDGHRFAADAVGRGAAALV 100

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTTTKEMLT 127
           V          +      V     ++ + A        + ++ +  TG+ GKTTT  ++ 
Sbjct: 101 VER-----YVDVDALQIRVPSTRKSMAQAARVFYGSPSSRMLMVGVTGTNGKTTTTHLVE 155

Query: 128 IALSSIKKTYACIGSYNNHIG---VPLTLA-------------RMPVDVDFGIFELGMSH 171
             L +  +    IG+  N +G    P                       D  + E+    
Sbjct: 156 AILVAQGRRVGLIGTNGNRLGDKAWPAQHTTPESLDLQALLAEMADEGADAVVMEVSSHA 215

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L ++R L   V   +A+ T +   HL     +E    AK  +F  L              
Sbjct: 216 LDQLRVL--GVDFDLALFTNLTQDHLDYHETLERYRDAKGMLFRALTGEMKGGKGASSPG 273

Query: 232 FELLKAK-------------------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
                                       A     + ++G   +A  + R W         
Sbjct: 274 SAPEATTLQGVPKRAIINADDPNAGFFIAASAAPVITYGIEADAMIKGRDWAVTPHGLTC 333

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +V   G  + +     G     N L        +  D +    AL       GR    R 
Sbjct: 334 DVLYPGGEVRLNLQLTGRFNLSNALAAFAAGWAVGIDPEAIAAALGAVTGVAGR--FERI 391

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            L Q F  ++D ++  +        +VL        GR I V G     G+  ++    +
Sbjct: 392 DLGQPFSVIVDYAHTPDGLE-----NVLVTARALARGRVITVFG---CGGDRDRTKRPKM 443

Query: 393 AEVLSLYNISHVWLSG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             V++  +   +  S          + +     L  +  VH             S    G
Sbjct: 444 GAVVARLSDVAIVTSDNPRTEDPRRIIEDILPGLADAGDVHVEPDRSSAIALALSLAQPG 503

Query: 445 DVVVV--KS 451
           D+V++  K 
Sbjct: 504 DLVMIAGKG 512


>gi|315300014|gb|EFU59252.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 16-3]
 gi|323190233|gb|EFZ75509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|324012248|gb|EGB81467.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 60-1]
          Length = 471

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    E              + DVV+V  K 
Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|323487025|ref|ZP_08092337.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
 gi|323399673|gb|EGA92059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Clostridium symbiosum
           WAL-14163]
          Length = 487

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 72/469 (15%), Positives = 146/469 (31%), Gaps = 43/469 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + L+ ++   +       V+ +  DSR  A    F  ++G + D H FI   +QKG
Sbjct: 1   MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A ++V    +        I V  V +   AL+ L  A       K T I +TG+ GKTTT
Sbjct: 61  AKVLVTEEAV---TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L +  +    IG+    IG                       +     + + E
Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S    +      +    ++   I+  H+     +  EE    K  + +         
Sbjct: 178 V--SSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLLLQNSRVCLVNR 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +           +        I +F    +ADF+    K   E  ++ +  + +     
Sbjct: 236 DDGHY-------REIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYES 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+   +    + +    +  + ++          R          T+I +
Sbjct: 289 RLRVNVPGLFNVYNAMAAAGVCSCLGLS-KERVAHALEHMQVDGRMEIVYKSAKCTVIVD 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
             +   +      S+L  +  +   R + V G         +    ++   L+  +I   
Sbjct: 348 YAHNAVS----MESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITA 403

Query: 402 --SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             S    +   +  +K  L R                +  S   +GD++
Sbjct: 404 DNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQEGDII 452


>gi|157369001|ref|YP_001476990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Serratia proteamaculans 568]
 gi|157320765|gb|ABV39862.1| UDP-N-acetylmuramyl-tripeptide synthetase [Serratia proteamaculans
           568]
          Length = 495

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 144/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPTAPGRALREMTLDSRIAAAGDLFVAVVGHQADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             V+   +  A  G++     +PV  +  +   L+ LA         +  ++ +TG+ GK
Sbjct: 61  AAVIAEAEGQAEDGAITEMHGVPVIYLSQLNQRLSALAGRFYHEPAERLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G                              
Sbjct: 121 TTTTQLLAQWGQLLGETSAVMGTVGNGLLGQVCPTENTTGSAVDIQHVLNELVDQGATLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    AV T ++  HL     +    +AK  +F G E    I  
Sbjct: 181 AMEVSSHGLVQHRVAALPFAAAVFTNLSRDHLDYHGDMANYEAAKWSLFAGHEVGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +    +     +  + +          + +         E+ 
Sbjct: 241 ADDEVGQRWLSQLPDAVAVTMQDNLQPGCHGRWLKTTAVNYHDNGATIHFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +   +   P  GR + +              
Sbjct: 301 SRLMGAFNVSNLLLALATLLSLGYPLAKLVATGNQLQPVCGRMEVFNAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALEAARLHCLGQLWCVFG----CGGDRDKGKRPLMGGIAEQFADRV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   L  +                     + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPQAIIADILTGLLDAGRALVIHGRAEAVTSAIMQAKEQDVVLVAGKG 467


>gi|307629659|gb|ADN73963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli UM146]
 gi|315285169|gb|EFU44614.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 110-3]
          Length = 471

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    E              + DVV+V  K 
Sbjct: 411 AGYAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|283477245|emb|CAY73156.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 495

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 135/479 (28%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A  G +     +PV  +  +   L+ LA     +    +  I  +     
Sbjct: 61  AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   L+         +                 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +     A   +     + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEV 283
           N DD        K       T+ +  +       L+  K       + +          +
Sbjct: 240 NADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNI 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L+ L  +  L   +D      S   P  GR + +             
Sbjct: 300 DSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYA 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L+    H +GR   + G     G         L   ++      
Sbjct: 360 HTPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408

Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   L  +                      GD+V+V  K 
Sbjct: 409 VVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|332764931|gb|EGJ95159.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-671]
          Length = 472

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +  +       + +         E+  H +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + H    E              + DVV+V  K 
Sbjct: 411 AGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 443


>gi|255326223|ref|ZP_05367309.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
 gi|255296677|gb|EET76008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rothia mucilaginosa ATCC
           25296]
          Length = 581

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 64/451 (14%), Positives = 131/451 (29%), Gaps = 49/451 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
              +QG   G      V GIS+DSR + PQ+ + A+ G    G  F   A++ GA  ++ 
Sbjct: 49  ASGVQGSESG--ESVEVTGISMDSRGVRPQDLYVALPGAKVHGAQFAEAALKLGASAILT 106

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI---IAITGSVGKTTTKEMLT 127
           +      +G   +PV   +++   +  LA      +        A+TG+ GKTT+  ML 
Sbjct: 107 DAAGAQLLGEAPVPVLVTENLREYVGPLAALIYGSASFPATHRYAVTGTNGKTTSTYMLE 166

Query: 128 IALSS---------------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
               +               I                  +L  +          + +S  
Sbjct: 167 SVFRTGLGVKTGLIGTIQILIDGVSVPSKMTTPESPHVHSLLTIMGQHQVRCAAMEVSSH 226

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---------------EGL 217
                    V+  +A  T +   HL     +E    +KA++F                G 
Sbjct: 227 AIDYHRVDGVKYAVAGFTNLTQDHLDLHGTMEHYFESKAQLFTPERAELAVITADDEWGE 286

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +                L     A   +    FG    A  ++++              +
Sbjct: 287 KMFSAACEQMGAQQVHRLVTARGAGLAEVPAEFGARDWAVVKVQREGLGHRFHVANGVGE 346

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                             +   +  +   +A+ +  +  L+               ++  
Sbjct: 347 SVECYTGLPADFNVSNAALAALMAYLDTDSAERERLLPELASGSALTPVVPGRMQLISLA 406

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++N +          L  +   G+G+ + V G   E           +   ++
Sbjct: 407 PHAIVDFAHNPDG-----LTRALEAMDRPGDGKVMIVFGATGE----RDQLKRPIMGAIA 457

Query: 398 LYNISHVWLS-----GFHVLALKDALPRSIH 423
                 V ++     G     ++ A+     
Sbjct: 458 AQYADIVVVTDDDPHGEAPEPIRAAVEEGAQ 488


>gi|33239864|ref|NP_874806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|46576944|sp|Q7VDG4|MURE_PROMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33237390|gb|AAP99458.1| UDP-N-acetylmuramyl tripeptide synthase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 503

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 146/481 (30%), Gaps = 48/481 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H+L +A+  H   +     ++ IS DSR I+    FF + G   DG  F   A+  GA 
Sbjct: 5   LHELFKAVGIHRQIVGKDLIIDSISCDSRHISKGGLFFGLPGEKVDGGIFWRKALASGAV 64

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATI-------------- 110
             V+          S    VF V D +   + ++A     R  + I              
Sbjct: 65  AAVIGEEAAQKDPPSNEDMVFVVSDPVAHWMGEMASVFWKRPSSQIDLIGVTGTNGKTTT 124

Query: 111 -IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIFE 166
              I     ++     L   L +    ++ +  +    G          +      G+ E
Sbjct: 125 TYLIEHLCKQSGITSALFGTLYNRWPKHSEVAIHTTAFGDVLQSQLAQAVAAGARLGVME 184

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
             +S     +          AV T +   HL     +E    +KA +F+     +K    
Sbjct: 185 --ISSHALDQRRVAGCSFSGAVFTNLTQDHLDYHESMEAYFQSKALLFQAPLLRDKESCS 242

Query: 224 FLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD +   L  + +    +         S   +  L      ++     +       
Sbjct: 243 VVNIDDPWGLRLSKQLNKSCWRASLEKRVIDSIQPELFLTDLNITNKGIEGVLHSPFGQG 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V   IG     NML  +GI+      +   + ++  F    GR ++ +         L
Sbjct: 303 PFVSSLIGRFNLMNMLEAVGILIQHGVSLQELLPSIKSFSGVPGRMEQIK-VEGDLPVVL 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        + L  +   G GR   V G     G         L   ++    
Sbjct: 362 VDYAHTPDG-----LKNALIALRSFGSGRLFCVFG----CGGDRDRSKRPLMGAIASKFA 412

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            HV L+  +            +   +     +                 + GD+V++  K
Sbjct: 413 DHVTLTSDNPRTEDPQQILNDVLPGIATETELIIEIDRANAIQMAIMKALPGDIVLIAGK 472

Query: 451 S 451
            
Sbjct: 473 G 473


>gi|310765087|gb|ADP10037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Erwinia sp. Ejp617]
          Length = 495

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 136/479 (28%), Gaps = 49/479 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G 
Sbjct: 5   NLRDLL----APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             V+   +  A  G +     +PV  +  +   L+ LA     +    +  I  +     
Sbjct: 61  AAVIAEAEGEAEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   LA         +                 
Sbjct: 121 TTTTQLLAQWAQLLGETGAVMGTVGNGLYGQLAPAENTTGSAVDVQHLLASLVDKGASLA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     +    A  T ++  HL     +     A   +     + G   +
Sbjct: 181 AMEISSHGLVQHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAII 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEV 283
           N DD        K       T+ +  +       L+  K       + +         ++
Sbjct: 240 NADDEVGRRWLEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGDI 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L+ L  +  L   +D      S   P  GR + +             
Sbjct: 300 DSRLMGAFNVSNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYA 359

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A           L+    H +GR   + G     G         L   ++      
Sbjct: 360 HTPDA-------LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADV 408

Query: 404 VWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   L  +                      GD+V+V  K 
Sbjct: 409 VVITDDNPRSEDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 467


>gi|213419637|ref|ZP_03352703.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 303

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 87/315 (27%), Positives = 142/315 (45%), Gaps = 14/315 (4%)

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           N IGVP+TL R+  D D+ + ELG +H GEI +   L RP  A++  +A AHL  F  + 
Sbjct: 1   NDIGVPITLLRLNHDYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLA 60

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +A AK EI+ GL + G   +N D++ +   ++      +        + N+DF      
Sbjct: 61  GVAKAKGEIYTGLPENGIAIMNADNNDWLNWQSIIGDRQVWR--FSPNAANSDFTAANIH 118

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             S  +   +Q    S++V+    G H   N L    +   + A +      L+      
Sbjct: 119 VTSHGTEFTLQTPMGSIDVLLPLPGRHNIANALAAAALSMAVGATLAAVKAGLAALKAVP 178

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR    + + NQ    ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  
Sbjct: 179 GRLFPIQLSENQ---LVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAE 231

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S++ H+ + E      I  V  +G     +  A   S    +      L   + + L + 
Sbjct: 232 SEACHLQVGEAAKAAGIDRVLSTGKLSQVISHA---SGVGEHFADKAALIARLHALLQEQ 288

Query: 445 --DVVVVKSSNSCGF 457
               ++VK S S   
Sbjct: 289 PMMTILVKGSRSAAM 303


>gi|326621819|gb|EGE28164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 471

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++A+TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++        I    D+     L +   A+ +      
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +    +     + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V   E              D DVV++  K 
Sbjct: 411 AGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443


>gi|119717292|ref|YP_924257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
 gi|119537953|gb|ABL82570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardioides sp. JS614]
          Length = 504

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 149/476 (31%), Gaps = 40/476 (8%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            PL T   +         G      V+GIS+ S+ I P + + A+ G    G +F   A+
Sbjct: 14  TPLAT---VAAWAGAELRGNPAGLEVSGISLSSQRIRPGDLYAALPGSRAHGIEFAQDAL 70

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             GA  V  +    A  G    P   VD     L +L+            ++ +TG+ GK
Sbjct: 71  AAGAVAVFTDEAG-ADRGPAGAPHLVVDRPRAVLGRLSARIYGEPAASMRMVGVTGTQGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIF 165
           TTT  +L   L       A +G+    I      + +                + D    
Sbjct: 130 TTTTRLLEAGLQQAGVPAAVVGTVGTRIAGEEVRSSLTTPEAPDLHALFAVMRERDVRAC 189

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S    +      V   +AV   +   HL     +E+  +AKA +F        +  
Sbjct: 190 AMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHRDLEDYYAAKASLFTPERARFALVN 249

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D     L +  +  +   ++     ++ AD++    +  +  S   V           
Sbjct: 250 VDDAHGRRLAEEATVPVRTFSMGRGDDAQRADWRAVDVRLRATGSEFVVVAPDGRRIPA- 308

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                           + +   A +D A+ A  +       G+  R    Q F  ++D +
Sbjct: 309 GCALPGDFNVANTLAAVAAAAEAGLDPAVVAAGIAAAGGVPGRLERVDAGQDFLVVVDYA 368

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          +  + P  EGR I VLG     G         +   ++      + 
Sbjct: 369 HKPDAVEA-----AIRTLRPLTEGRVIVVLGA----GGDRDPGKRPIMAGIAARLADLLV 419

Query: 406 LSG-----FHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++          A++ A+   +                        GD+V++  K 
Sbjct: 420 VTDDNPRTEDPAAIRAAMLAGVVTGQAIEVGGRRAAIREALRRAGPGDIVLIAGKG 475


>gi|251772194|gb|EES52764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum ferrodiazotrophum]
          Length = 512

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 153/474 (32%), Gaps = 56/474 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQKGAGLVVVNTDM 74
             G +P+   +GIS DSR ++P + F        DG     F+  A+ KGA L+V +   
Sbjct: 24  LEGDLPERL-SGISDDSRKVSPGDLFL----LRMDGPLQEKFLDEAIAKGAALLVASRRH 78

Query: 75  VASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126
           + S+          +PV  V+++  A   +A A          ++ +TG+ GKTT+  ++
Sbjct: 79  LPSVLERRQVSGRKVPVCVVENIQEAAGVIASAWYGEPSRSMKVVGVTGTNGKTTSSFLV 138

Query: 127 TIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHL 172
              L         IG+    +G                    R  ++       + +S  
Sbjct: 139 RSMLDRSGLRAGLIGTVWFDLGDGLSEAPQTTPGALFLQRSFRQALNNGLVAMSMEVSSH 198

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---GTIFLNYDD 229
              +             T +   HL      E+  +AKA +   +          +N DD
Sbjct: 199 ALSQDRVAGTFFSAVHFTNLTRDHLDYHKTFEDYFNAKARLLHWVNPDGSLPPAVINADD 258

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +  +L  +    G + + ++G S+       +     +     + ++G+ + V     G
Sbjct: 259 PYGRILAEQIARRGDRRLLTYGHSERLSIHPLESVISLDGIKGALSVEGRRISVDSTLPG 318

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               QN++  +G    L    +     +       GR +R               + +A 
Sbjct: 319 DFNLQNIMGAVGCALALGISPEAVEAGIQSLPGVPGRFERANPGGKFAVIVDYAHTDDA- 377

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                   ++LS + P   GR I V G     G             ++      V ++  
Sbjct: 378 ------LKNILSALRPLTPGRVITVFG----CGGDRDRGKRPRMGKVAGELSDIVVVTSD 427

Query: 409 ----FHVLALKDALPRSIHVH-----YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D +   +++                   S    GD V++  K 
Sbjct: 428 NPRTEDPEFIIDEIEPGLNMTGRSYLREVDRRTAIARALSLAQPGDAVLIAGKG 481


>gi|167626536|ref|YP_001677036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
 gi|167596537|gb|ABZ86535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella philomiragia subsp. philomiragia ATCC
           25017]
          Length = 513

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/498 (13%), Positives = 156/498 (31%), Gaps = 65/498 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I + + K
Sbjct: 1   MKRINQILKFLDIQTLSQN-NFQIESLSLDSRKCDAKSAFIALKGSTTDGNKYIDNVLAK 59

Query: 64  GAGLVVVNT-DMVASIGSLSIP------VFGVDDVLGALNKLAVAARL-RSKATIIAITG 115
           G  L++ +     +SI + S+       +F V+++   L+ LA      +    II ITG
Sbjct: 60  GTKLILSDKLPRQSSIATPSVAEGELSNIFYVENLKEKLSNLAKWFYDYKKPQNIIGITG 119

Query: 116 SVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161
           + GKT+    +                  +         ++     +          +  
Sbjct: 120 TNGKTSISSYIAQLQKLLDQKSLLLGTNGNGIYPDLQESTHTTLDILSLYQTISDYENYQ 179

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE--- 218
             + E+  S     +  T  +   IAV + ++  HL     ++    AKA++F+      
Sbjct: 180 NLVMEV--SSHSLDQKRTEGLDFDIAVFSNLSHDHLDYHKTMDNYFEAKAKLFQFKNLKK 237

Query: 219 --------------KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                         +             E +             S    K   +   K  
Sbjct: 238 AVINIDDEYGQKLWENTNKSSFRQAPTTESIDTDLKYSIEIITVSLKSKKADIYIESKSI 297

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +  + S+     Q          +G     N+ ++L      ++  D  ++ +S   P +
Sbjct: 298 ENMQTSFDLYISQKHIGTYQTSLVGEFNLMNLGLSL-AALDDSSTRDQLLENISKLKPVK 356

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           GR +                + +A           L  +  +       + G     G  
Sbjct: 357 GRMEVIALVNGAKIIIDYAHTPDA-------LEKALQTLVNYHPNNLWCIFG----CGGN 405

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFL 435
             +    +   ++    + + ++  +            +K         ++ ++ +    
Sbjct: 406 RDTTKRPIMAQIAEKYANKIVVTEDNNRFESIESIFEDIKKGFSHPDKRNFIDSREKAIK 465

Query: 436 FIQSSLVDGDVVVV--KS 451
           +   +    DV+++  K 
Sbjct: 466 YTIENSKANDVILLAGKG 483


>gi|303228427|ref|ZP_07315260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
 gi|303230769|ref|ZP_07317516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302514529|gb|EFL56524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-049-V-Sch6]
 gi|302516929|gb|EFL58838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Veillonella atypica ACS-134-V-Col7a]
          Length = 494

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 141/483 (29%), Gaps = 51/483 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T  D++  +    +       +  I+ DSR++ P   F A+ G   DGH++I  AV  
Sbjct: 1   MKTLKDIISTLDVQQVQGNQNVSIQDITADSRAVKPNSLFIALDGATVDGHNYIDKAVAA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+V+  +        + V  V D   A+             +  ++ +TG+ GKTT
Sbjct: 61  GAVAVIVSKPV---TVPNDVCVITVSDTRQAMMACVPYFFDYPANRMRMVGVTGTNGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L +       IG+ +  IG   T   +       +    + H      + + 
Sbjct: 118 TTHMIRHILKAQGHKVGVIGTVHIMIG--DTSYPIHNTTPDVVDLQHILHQMVQENVEYC 175

Query: 182 ----------------VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223
                           V    AV T +   HL      E    A  K             
Sbjct: 176 VMEVSSHALALGRVSGVEFDTAVFTNLTQDHLDFHKTFENYLAAKCKLFEQVSAANQEKD 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +    +          ++                ++ S   V  +G+S  V
Sbjct: 236 NKGAVINIDDSYGHRVMEKTTAPTITYSTLGKGTLNASDVHMSTKNSQYTVNYKGESYPV 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             +  G     N L  +G        ++    AL  F    GR +      +        
Sbjct: 296 SMNTTGLFNVYNTLAAIGACLQEGISMEAIDTALKTFSSVPGRFELIEEGQDFAVVVDYA 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +          ++L       E R I V G     G    +    +   ++      
Sbjct: 356 HTPDG-------LQNILETAKAIKENRIIIVFG----CGGDRDATKRPIMGRIAAEYGDK 404

Query: 404 VWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           ++++  +                +K+AL                         GD+V++ 
Sbjct: 405 IYVTSDNPRTEDPVQIVKDVEVGVKEALRDGTSYEVIVDRREAINHAIHDAKAGDIVIIA 464

Query: 450 -KS 451
            K 
Sbjct: 465 GKG 467


>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
 gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
          Length = 734

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 160/461 (34%), Gaps = 32/461 (6%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60
           T   L + +            +   +   + I P  A+FA                   A
Sbjct: 295 TVGKLCEILNAEL-RNAADVPITSFAFGKQKIKPGCAYFA-----------ADKETAVTA 342

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +KGA +++    +        IP   V ++  AL++ AV  +       +A+  S  K 
Sbjct: 343 FEKGAAVIITTQPIEK------IPNIVVANLDTALSRTAVFIKSALGMWTVAVMDSPEKI 396

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
               M+   LSS  +T   I   NN+  +   +       +  +  +   + G +  ++ 
Sbjct: 397 NPLSMIEQMLSSKMETVHSISVTNNYNSMLHAMFASTPKTETAVINVSCVNGGNVERVSQ 456

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                +A++T+   +         E+   K ++  G+ ++G + +N DD     +     
Sbjct: 457 TANFDVAILTSTVVSKNPRELTKPELIEEKLKVCGGMNESGAVIINIDDKNLAGIFTIPQ 516

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +    +     ++ AD+     +    +   ++     +  +  +    H     L T 
Sbjct: 517 DIITIGV----DNRMADYFADNIELSHNKISFDIIHGADNYHIELYSDDKHSVYQALATF 572

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  I+       I A+  + P  G         N+    +I +  N    S+ AA+  L
Sbjct: 573 ALGEIMGIPPKQIIPAIEKYRPSTGLTT----VRNERGIYVISDFENEAVESVGAALKEL 628

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP- 419
             +    + RRIAVL ++ +  E     +  +  +++  +++     G     L      
Sbjct: 629 CTMQLPPDSRRIAVLSEVGDGDEHELEIYRKVGNIVNKASVNITVCYGETAAELMKTADL 688

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           +S  V    T   L  F++ +L D D V+ K S       +
Sbjct: 689 KSKFVIKLNTRQALTEFLKLNLRDNDAVLFKGSTVTELDEI 729


>gi|332142429|ref|YP_004428167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552451|gb|AEA99169.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 515

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 82/488 (16%), Positives = 155/488 (31%), Gaps = 59/488 (12%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           +A+        P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++  
Sbjct: 11  KALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILAQ 70

Query: 72  TDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
           TD   + G + +     +  + ++   L+ LA A       K T +A+TG+ GKT+T ++
Sbjct: 71  TDDSEAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQL 130

Query: 126 LTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167
           LT    ++                       +       P  +    +  DF   E+   
Sbjct: 131 LTQLKDALGTRSASIGTLGSSVFEGDATQWSNTPAANTTPDAIRMQYLLADFVQSEVRHA 190

Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE---------- 215
               S    ++     V+  IAV T +   HL     +EE   AK  +            
Sbjct: 191 AFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLCQPGLKAVVLN 250

Query: 216 -GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +++       D++   +      +       +    ++           S     E+
Sbjct: 251 ANDDESNKWDNVADNAITRIWTGIDESADGALFRAHNNPQSRHCFATNASYHSGGCSFEL 310

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                S  +     G     N+L  +G +       D  +KA++   P  GR + +    
Sbjct: 311 VSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDAVVKAVNAITPVPGRMEVFPVPG 370

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                     + +A          VL     H  G+   V G     G    +    L  
Sbjct: 371 AANLVVDYAHTPDA-------LEKVLLSAKFHTAGKVWCVFG----CGGDRDTGKRPLMG 419

Query: 395 VLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             +      + ++  +            +   L  S         +       +     D
Sbjct: 420 QAAEAGADAIVITTDNSRSEDPESIAQDIITGLKDSSLAVSIPDREQAIRHCLAHADKSD 479

Query: 446 VVVV--KS 451
           +++V  K 
Sbjct: 480 IIIVAGKG 487


>gi|328947387|ref|YP_004364724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
 gi|328447711|gb|AEB13427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema succinifaciens DSM 2489]
          Length = 568

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 65/514 (12%), Positives = 134/514 (26%), Gaps = 80/514 (15%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G S        V G++ DSR +     FFA+ G H  G+ FI  AV  GAG VV   ++
Sbjct: 25  DGISSPKNTDACVEGLAFDSRDVKENYLFFALPGTHTTGNKFIAQAVSCGAGAVVFQDEI 84

Query: 75  VASI----------GSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
                          S  +    V     A++ ++        + ++   +TG+ GK++T
Sbjct: 85  TQEEHSQIKEALASSSKKVVFVKVPSSRFAMSPVSSCFYDNPSSKLVVYGVTGTEGKSST 144

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARM----PVDVDFGI 164
              +   L         I +    +G               P+    +           +
Sbjct: 145 VSFIWQLLRLNGIKAGFISTVQYSLGGDAIDNPQHQTTPEAPVVQRELYEMVCNGCTHAV 204

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L +       V    AV   +   HL      E+  S KA +F  L+      
Sbjct: 205 VESSSHGLSKKLNRLGNVLFDCAVFMNVTLEHLEFHGTYEQYKSDKANLFRALDLHNH-- 262

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +           + ++   +   +     +   +    +                
Sbjct: 263 -EKTIAGVATKIPAFGVVNLEDPAASYFASCTKHKTIGFTTEGKAGKQAALGLSSPPLPE 321

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                 + +   + +       +        +L+  +           A N    T    
Sbjct: 322 IPKDMPYFSCRNIASARFGLAFSIHRFETHDSLNNENSVVHVKASVPGAFNAYNITAAIL 381

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAV------------------------------ 374
           + +         +++ +Q     +GR   +                              
Sbjct: 382 AVHGTTGISIEKLALCAQKLTSVKGRMTVIDEGQPFEVIVDYAHTPSSFETIFPPLKNRA 441

Query: 375 LGDMCEM---GELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------------ALKDA 417
           +G M  +   G    +    L   ++      V L+                   A K+ 
Sbjct: 442 MGKMICVFGSGGERDTTKRPLQGEIAARFCDIVILTDEDPRKEDRMTIIEQIALGARKEG 501

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++ +              S   + D+V++  
Sbjct: 502 KKDNVDLFLVPDRPQAIRKAFSMAKENDIVLLLG 535


>gi|150389405|ref|YP_001319454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949267|gb|ABR47795.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alkaliphilus
           metalliredigens QYMF]
          Length = 513

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 83/466 (17%), Positives = 154/466 (33%), Gaps = 63/466 (13%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G++ DSR +     F AIKG   DG+++I  A+Q+GA ++     + A    L + 
Sbjct: 25  VEVQGVTSDSRKVKTGYVFVAIKGAESDGNNYIGEAIQRGAVIIYTEHRITA----LGVM 80

Query: 85  VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +    +    L  L  A       K  +I ITG+ GKTTT  ++  AL     +   IG+
Sbjct: 81  IKICSNARKTLADLCNAFYDHPSEKIRVIGITGTNGKTTTSHIIYHALKESGVSVGLIGT 140

Query: 143 YNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAV 188
            +  I        +       I+               + +S  G      H ++  IA+
Sbjct: 141 LDIKINNQTHFTELTTPSAEDIYYYLNKMVQQKVQVVVMEVSSHGLKSERVHGIKFDIAI 200

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T I   HL+    + +   +K ++F+ L       LN DD+    L           + 
Sbjct: 201 HTNIERDHLNYHKNMGDYIRSKKKLFDCLSPGKVALLNLDDNHSLELL---TGNNGLIVV 257

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-----------MEVVHHGIGYHMAQNML 297
           ++G +  A             ++     +G +                + +G H   N L
Sbjct: 258 TYGLNVRATVTASSIDTELNTTFHFCLQRGMTTLAGLEVEPFEYPFSINLLGKHNIYNSL 317

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +    +L    +   K +  F     R +             + + ++ NPAS  A  
Sbjct: 318 AAITCCLLLDLSCEEIAKNIKSFTGVTRRLEVIYKKGY-----TVIDDFSHNPASYGAVF 372

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY----------------NI 401
             +  +         A+ G     G      + D+ ++                     +
Sbjct: 373 ESMQNLEYKNLHVINAIRGS---RGADINQENADVLKIWYELLGMKTLMITSSKDKTGKL 429

Query: 402 SHVWL--SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
             V +   G     L +    S++  Y + +      I   + +GD
Sbjct: 430 DEVQVEEIGAFFKVLSEG---SVNFEYVDHLSDAIETIIPRIEEGD 472


>gi|262044871|ref|ZP_06017914.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
 gi|259037840|gb|EEW39068.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
           13884]
          Length = 471

 Score =  116 bits (291), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 60/453 (13%), Positives = 130/453 (28%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A++G   DG  +I  A+ +G   ++      A  G +     +PV 
Sbjct: 2   TLDSRVAASGDLFIAVQGHQADGRRYIPQAIAQGVAAIIAEAQGEAKDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +  +   L+ LA     +    +  +  +     T     +A  +              
Sbjct: 62  YLSQLNERLSALAGRFYHQPSQQLRLVGVTGTNGKTTTTQLLAQWAKLLGETSAVMGTVG 121

Query: 147 IGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
            G+   +          +                  + +S  G ++     ++   +V T
Sbjct: 122 NGLLDKVVPTENTTGSAVDVQHVLSSLVGQGATFGAMEVSSHGLVQHRVAALQFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHCGQAIVNADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + ++        E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATAVNYHDSGATIQFDSSWGKGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFSAPGKPAVVVDYAHTPDA-------LEKALQAARLHCSG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +      E              + DVV+V  K 
Sbjct: 411 AGQAKVMEGRAKAVTNAVMQAKENDVVLVAGKG 443


>gi|121595966|ref|YP_987862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
 gi|167017290|sp|A1WC11|MURE_ACISJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|120608046|gb|ABM43786.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidovorax sp. JS42]
          Length = 501

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 87/486 (17%), Positives = 153/486 (31%), Gaps = 51/486 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN L T   L +A+         +  V G +  DSR I P + F A  G   DG   +  
Sbjct: 1   MNALHTLTTLQEAV------DWLRQRVTGTLQTDSRLIQPGDGFIAWPGAATDGRAHVGD 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           AV +GA   +V  + V         +  +  +  A   +A         +  ++A+TG+ 
Sbjct: 55  AVARGAAACLVECEGVEPFALAGDHIAALRGLKAATGMIASEWFGHPTQRLQVLAVTGTN 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164
           GKT+T   L  AL+ + K      +         +GVP  L    +     +        
Sbjct: 115 GKTSTAWWLADALNQLSKEELPALAGCALVGTLGMGVPPALQTTGMTTPDPVRLQRAFAQ 174

Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                     +  S +G         R H+A+ T     HL    G+     AK  +F+ 
Sbjct: 175 FAEAGHRACAIEASSIGLAEHRLDGTRIHVALFTNFTQDHLDYHPGMAAYWQAKRALFDW 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D     L            ++S      A  Q +          + V  
Sbjct: 235 PGLRAAVVNVDDPQGAALHAE--LQGSDLDLWSISLQGPARLQAKHIVHTGAGLALTVAE 292

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    IG +   N+L  +  +  L   +  A++A +   P  GR ++   A   
Sbjct: 293 GAHTEVLQTQVIGLYNVSNLLGVIAGMRALGVPLAQALQACARLRPVPGRMEQLAAAGQP 352

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                    Y   P ++  A++ L  ++    GR   V G     G    +    L   +
Sbjct: 353 LVAVD----YAHTPDALHQALAALKPVAAQRGGRLWCVFG----CGGNRDAGKRPLMGAV 404

Query: 397 SLYNISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++     G    ++   +         V              +     DVV
Sbjct: 405 AQREADEVIVTSDNPRGEEPQSIIHQILLGTIAGTSVRAEVDRAAAIAQALAEAGANDVV 464

Query: 448 VV--KS 451
           ++  K 
Sbjct: 465 LIAGKG 470


>gi|323692067|ref|ZP_08106314.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
 gi|323503867|gb|EGB19682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium symbiosum
           WAL-14673]
          Length = 487

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 146/469 (31%), Gaps = 43/469 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + L+ ++   +       V+ +  DSR  A    F  ++G + D H FI   +QKG
Sbjct: 1   MKLREWLKEMEYELLQGNLDEEVDDVVYDSRKAAAGSVFVCMRGANVDSHKFIPDVIQKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A ++V    +        I V  V +   AL+ L  A       K T I +TG+ GKTTT
Sbjct: 61  AKVLVTEEAV---TVPEEITVLRVGNGRNALSLLSAARFGYPARKMTTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L +  +    IG+    IG                       +     + + E
Sbjct: 118 TYMIKAILEAAGEKTGLIGTNGAIIGSDHFPTMNTTPESYILQEYFAKMVEQGCRYMVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S    +      +    ++   I+  H+     +  EE    K  + +         
Sbjct: 178 V--SSQSYLMHRVDGIFFDYSIFLNISNDHIGPNEHASFEEYLYYKKLLLQNSRVCLVNR 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +           +        I +F    +ADF+    K   E  ++ +  + +     
Sbjct: 236 DDGHF-------REIIEGAKAEIKTFSMEHSADFRAADVKYIREHDFVGLDFKMEGDYES 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+   +    + +    +  + ++          R          T+I +
Sbjct: 289 RLRVNVPGLFNVYNAMAAAGVCSCLGLS-KERVAHALEHMQVDGRMEIVYKSAKCTVIVD 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--- 401
             +   +      S+L  +  +   R + V G         +    ++   L+  +I   
Sbjct: 348 YAHNAVS----MESLLMTLRDYKPKRLVVVFGCGGNRARDRRYSMGEIGGKLADLSIITA 403

Query: 402 --SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             S    +   +  +K  L R                +  S   DGD++
Sbjct: 404 DNSRFEKTSDILADIKTGLSRTEGKFIEIPDRREAIEYSLSHAQDGDII 452


>gi|328675662|gb|AEB28337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Francisella cf. novicida 3523]
          Length = 475

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/474 (12%), Positives = 137/474 (28%), Gaps = 49/474 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +   + +L+ +   ++       +  +S+DSR    + AF A+KG   DG+ +I   + K
Sbjct: 1   MKNINQILKFLDIQTLSQN-NFQIESLSLDSRKCDDKWAFVALKGQLTDGNKYIDSVLAK 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVGKTTT 122
              LV+ ++            +F + ++   L+ LA      +    II ITG+ GKT+ 
Sbjct: 60  DISLVLTDSHEFEDQK----RIFYIQNLKEKLSALAKWFYDYKKPQNIIGITGTNGKTSI 115

Query: 123 KEMLTIALS-------------SIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
              +   L              +         ++     +          +    + E+ 
Sbjct: 116 SSYIAQFLDLSSQKTLLLGTNGNGIYPDLKESTHTTLDILSLYQTISYHKNYQNLVMEV- 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +  T  +   +AV + ++  HL     ++    AKA++               
Sbjct: 175 -SSHSLDQKRTEGLDFDVAVFSNLSHDHLDYHKSMDNYFEAKAKL-----FQFKSLKKAI 228

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +   +    I +            K K                    +   
Sbjct: 229 INIDDEYGQRLCNITKVPIITVSLKSEYADVYIKPKSIEGIKTKFEMFFNGRFVGEYTTK 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  M + L   S+        I  L      +GR +      +         + +A
Sbjct: 289 LIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKSVKGRMEVIELDNDIKIVIDYAHTPDA 348

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                      L  ++ +       + G     G    +    +   ++    S + ++ 
Sbjct: 349 -------LEKALQTLANYNPNNLWCIFG----CGGNRDTTKRPIMAQIAEEYASKIVVTE 397

Query: 409 FHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +            +K          +  + +    F   +   GD++++  K 
Sbjct: 398 DNNRFENIENIFSDIKKGFKYPQKHTFITSREQAIRFSIENANQGDIILLAGKG 451


>gi|270000494|ref|YP_003329006.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|217064589|gb|ACJ78839.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
          Length = 237

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 79/227 (34%), Gaps = 32/227 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVD 161
           GKTTT  +L   LS        +G+    +G                          + D
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNAD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           + + E+    L   R      +  IAV T +   HL      +E   
Sbjct: 174 YCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKH 218


>gi|322615944|gb|EFY12861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322620728|gb|EFY17588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322623920|gb|EFY20757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627368|gb|EFY24159.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322630675|gb|EFY27439.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322638105|gb|EFY34806.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322676402|gb|EFY72473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|323216558|gb|EGA01284.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323219907|gb|EGA04385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323225813|gb|EGA10033.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323228645|gb|EGA12774.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323236741|gb|EGA20817.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323239758|gb|EGA23805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242194|gb|EGA26223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323249382|gb|EGA33298.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323252285|gb|EGA36136.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323256625|gb|EGA40355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323262994|gb|EGA46544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323265479|gb|EGA48975.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323271733|gb|EGA55151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 471

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 142/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++A+TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++        I    D+     L +   A+ +      
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +    +     + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V   E        +     D DVV++  K 
Sbjct: 411 AGQVRVMEGRAEAVTNVIMQAKDNDVVLIAGKG 443


>gi|297161282|gb|ADI10994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces bingchenggensis BCW-1]
          Length = 544

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 87/489 (17%), Positives = 142/489 (29%), Gaps = 58/489 (11%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L   +   +           +  V GI+ DSR++ P + + A+ G    G DF   A
Sbjct: 35  LRELADQLGIDAPKAPDAPKAPEEAAVTGITHDSRAVRPGDVYAALPGARLHGADFAAQA 94

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
              GA  V+ +        +  +PV  V++  G +  LA             I ITG+ G
Sbjct: 95  ADLGAVAVLTDPGGADRAAATGLPVLVVENPRGRMGALAATIYGEPGRDLLQIGITGTSG 154

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           KTTT  ++                      V   +    +  +    E            
Sbjct: 155 KTTTAYLV-EGGLKAAAAKGDGSLTGLIGTVESRIGDERIKSERTTPEATDLQALFAVMR 213

Query: 167 --------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                   + +S    +          +AV T ++P H+   S +E+   AKA++     
Sbjct: 214 ERGVGSLAMEVSSHALVLGRVDGCVFDVAVFTNLSPEHMEFHSDMEDYFQAKAQL----- 268

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            T         +  +    +   L    + +F    + D   R           E  + G
Sbjct: 269 FTKARSRAAVINLDDEYGKRLVDLSEVPVTTFSAEGHPDAHWRAADVTVGPLGSEFTILG 328

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + E V        A N+  TL  V  L         A        G   R         
Sbjct: 329 PNGESVTAAAPLPGAFNVANTLAAVVALAVAGIDPQTAADGVAAVPGVPGRLERVDAGQP 388

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +  + +  +       A  SVL  +    EGR  AVLG     G                
Sbjct: 389 YLAVVDYAH----KTDAVESVLRALRKVTEGRLHAVLG----CGGDRDQQKRGPMGAAVA 440

Query: 399 YNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSL--------VDG 444
                  L+  +  +      L   L  +  V   E  D L    ++            G
Sbjct: 441 RYADTAVLTSDNPRSEDPLAILATMLAGAAEVPAHERGDVLVDADRAQAIAAAVARAEPG 500

Query: 445 DVVVV--KS 451
           D V+V  K 
Sbjct: 501 DTVLVAGKG 509


>gi|229139233|ref|ZP_04267808.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|228644292|gb|EEL00549.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 244

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/225 (22%), Positives = 79/225 (35%), Gaps = 32/225 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILHAV 61
             +L   +            + G+ +DSR I     F  + G   DG     H F+  AV
Sbjct: 10  LKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLKDRHQFVEDAV 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
           + GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ GK
Sbjct: 68  KNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LARMPVDVDFG 163
           TTT  +L   LS        +G+    +G                          + D+ 
Sbjct: 123 TTTSYLLEKILSDYGYHTGLMGNNGVKVGSKWYPTDINTQEPPTLQRNLQMMKNQNADYC 182

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           + E+    L   R      +  IAV T +   HL      +E   
Sbjct: 183 VMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHETFDEYKH 225


>gi|319760281|ref|YP_004124219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
 gi|318038995|gb|ADV33545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Candidatus Blochmannia vafer str. BVAF]
          Length = 515

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 66/466 (14%), Positives = 156/466 (33%), Gaps = 45/466 (9%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  + +DSR++     F AIKG   DG  +I HA++ GA  V++ +    +  + 
Sbjct: 30  SSALVITALQLDSRNVTVGNLFIAIKGHKTDGRLYIKHAIKNGAVAVLLESTNNDNFLAQ 89

Query: 82  SI--------PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
           +I        P+     +  A++ +A            +I +TG+ GKTT   +L   + 
Sbjct: 90  NIVNNVSSCVPIINFYKLNQAVSSIAGRFYGHPSRNLNLIGVTGTNGKTTISHLLANWVE 149

Query: 132 SIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRF 177
            + +  A +G+    +   + ++                 +        + +S  G  ++
Sbjct: 150 LLGEKSAVMGTIGYGMIGSMCVSNCTTFSAIDTQRILNQFIQSGIKFVAMEVSSHGLDQY 209

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +A+ + +   HL     I +   AK  +F  L  T  +    D   +E L  
Sbjct: 210 RVDALYFDVAIFSNLTSDHLDYHGDINKYIMAKWRLFSELCVTNYVINVDDYIGYEWLSY 269

Query: 238 KSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +++ +    +  K    ++ +L K       + +       +  +    +G     N+
Sbjct: 270 LPNSVAVTIQDNLPKFWKGEWIKLVKANYFVYGTDVFFHSSWGNGIIRSQLLGECNVSNL 329

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+ LG + +L   +   +       P  GR ++++             + +A    ++  
Sbjct: 330 LLALGALLVLGYPLMVLLSIADQLKPICGRLEKFKSFNKPTIIVDYAHTPDALEKILRFL 389

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412
            + L       +G+   V G     G            +++     +V ++  +      
Sbjct: 390 GAQLC-----KKGKLWCVFG----CGGNRDKLKRSRMGIVAERYSDYVVITDDNPRTENS 440

Query: 413 -----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +   +  S  +   +                D +++  K 
Sbjct: 441 QSIIDDIILKIKHSEKITIIKNRVQAIETAICQADSNDFILIAGKG 486


>gi|293370478|ref|ZP_06617031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
 gi|292634470|gb|EFF53006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bacteroides ovatus SD CMC 3f]
          Length = 482

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLKLVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           +L             I +  N+I                +   L RM  +    +  + +
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV-FMEV 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +     ++    + T +   HL     +E    AK + F+ L K      N DD
Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG
Sbjct: 240 KNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G   +L    +  + ALS  HP  GR    R              Y   
Sbjct: 292 KFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHT 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  
Sbjct: 348 PDALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 410 HVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + D L                              GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|34540385|ref|NP_904864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
 gi|46576910|sp|Q7MWM7|MURE_PORGI RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34396698|gb|AAQ65763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas gingivalis W83]
          Length = 487

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 140/476 (29%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 L  ++  ++    +  V+ I+ DSR       F A++G   DGH +I  A  +G
Sbjct: 1   MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
               VV    +            V D   AL  LA A         T++ +TG+ GKTT 
Sbjct: 61  CRAFVVED--LPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTV 118

Query: 123 KEMLT-------------IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
             +L                + +     +   ++     +    L R   D       + 
Sbjct: 119 ATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +     + T +   HL     + E   AK   F+GL       +N D
Sbjct: 179 VSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     + ++     A+++ +  ++  +   M +  +   +       
Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR------ 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L +            + L +         R++   ++  +  I + Y  
Sbjct: 289 -LVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   +  +  ++   +   I V+G     G         +    +      + L+ 
Sbjct: 347 TPDALINVLDTIRPLAKSHK--VITVVGA----GGNRDKGKRPIMAKEAARRSERLILTS 400

Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +                               GD V++  K 
Sbjct: 401 DNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456


>gi|306843217|ref|ZP_07475828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
 gi|306286582|gb|EFM58159.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO2]
          Length = 490

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 158/473 (33%), Gaps = 38/473 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++       + G   +  + GI+ DSR++     F A+KG   DG  F   A
Sbjct: 1   MT--MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V++GA  ++   DM  +I    +PV  VDD    L   A     +    ++A+TG+ GKT
Sbjct: 58  VKRGAVAIIAGKDM--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR      T +   H+   + I+E   AK  +F  L   G   + 
Sbjct: 176 MEASSHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAII 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  F     ++  L    + + G+  N    L++ +    +  +EV++  +  E+   
Sbjct: 236 FADDQFSAQAIEAATLAGCDVKTVGRKGNF-IALKRVEHERFRQHVEVRIGEEIFEIELP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+  +       A++AL++     GR        +      +D ++
Sbjct: 295 LAGDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPA-YVDYAH 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL+ + P   GR I V G     G         +   ++      V +
Sbjct: 354 KPEALE-----NVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIV 404

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + +  +                 S +  GD +VV  K 
Sbjct: 405 TDDNPRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 457


>gi|325662247|ref|ZP_08150862.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086048|ref|ZP_08335131.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471499|gb|EGC74720.1| hypothetical protein HMPREF0490_01600 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406971|gb|EGG86476.1| hypothetical protein HMPREF0987_01434 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 490

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 87/479 (18%), Positives = 150/479 (31%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +Q   +    +  +  ++ DSR +     F  I G   DGH +I    +KG
Sbjct: 1   MKLTALLERLQYEVVQGTKEIEITELTNDSRKVTEGSVFVCISGAVSDGHQYIEEVGKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           A  V+V  D+ A      + V  V+D     AL   A       +  +I ITG+ GKTTT
Sbjct: 61  AAAVIVEKDVEA---PKHMTVIRVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L  +      IG+    IG                    R  VD       + 
Sbjct: 118 TYMVKSILEEVGHKVGLIGTIEAIIGDEVIPAVNTTPESFTIHQYFRKMVDAGCDAVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G +   T  +   I + T +   H+        E+    K  +             
Sbjct: 178 VSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FRQCKI 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283
              +  +             I +FG S+ AD +    +  +   +             +V
Sbjct: 231 GIANVDDPYFKDVFREATCEIETFGFSEKADLRAEHAELVTRPGYLGVAYHVAGLMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +        +   KAL           R         FTL+ 
Sbjct: 291 EIDIPGTFSVYNSLTAIAVCRHFNVPSEKIQKALK----VAKVKGRIEMVKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L +  P        ++      G  S++   ++ EV        
Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSKTRRYEMGEVSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALP---RSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S          + D +    +     Y E         +   +   GDV+V+  K 
Sbjct: 400 IITSDNPRFEEPQEIIDDIKIGMKKTDGAYVEICDRKEAIRYAIVNGQPGDVIVLAGKG 458


>gi|168031535|ref|XP_001768276.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162680454|gb|EDQ66890.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 539

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/438 (17%), Positives = 145/438 (33%), Gaps = 41/438 (9%)

Query: 1   MNPL--WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M P    T  +LL   +   +         + GI  DSR + P + F  +KG   DG++F
Sbjct: 2   MEPTYRMTLAELLDEARVTPVAVEGNLDIEITGIQHDSRLVIPGDLFVCVKGLKSDGYEF 61

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAIT 114
              A++KGA  +V +++++ + G  +     V+D    L+ LA A          ++ IT
Sbjct: 62  AHQAIEKGAVAIVSSSEVLPAEGLEAS--VVVEDTNILLSGLAGAFYGHPSKNLAVVGIT 119

Query: 115 GSVGKTTTKEMLTIALSSI----------KKTYACIGSYNNHIGVP-------LTLARMP 157
           G+ GK TT  ++     ++                          P          + + 
Sbjct: 120 GTNGKATTSYLIRSIYEAMGLQAGLLGTINYYINGKKKLEATHTTPDAVHLQKHMASMVH 179

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFE 215
              D  I E+  S           V   +AV T +           +E   AS K     
Sbjct: 180 HGTDACIMEV--SSHAMHLGRCKEVDFDVAVFTNLTHDPEDFHKSEDEYKEASGKLFAKM 237

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +     +N DD   +    + +       Y+ G +KNAD    + +    +S + V+
Sbjct: 238 VNPEKHRKIVNIDDPQSDYFVTQGNQDVPVVTYAMG-NKNADVYPLEVQLSLFESELLVR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               ++E+    +G H   N+L  + +   + A ++  ++ +       GR +       
Sbjct: 297 TPRGNLEISSGLLGRHNVYNILAAVAVGIAVDAPLEDIVRGIEEVDAVPGRCELIDEEQA 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    + +           +L  +   G  R I VLG               L   
Sbjct: 357 FAVIVDHANTPDG-------LSRLLDTVRECGPRRIITVLGSQG----DRDKAKRPLMAK 405

Query: 396 LSLYNISHVWLSGFHVLA 413
           ++         +  +  +
Sbjct: 406 IATDKSDVCIFTSDNPRS 423


>gi|188994487|ref|YP_001928739.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
 gi|188594167|dbj|BAG33142.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate ligase
           [Porphyromonas gingivalis ATCC 33277]
          Length = 487

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 140/476 (29%), Gaps = 49/476 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 L  ++  ++    +  V+ I+ DSR       F A++G   DGH +I  A  +G
Sbjct: 1   MKLEQYLSELRPIAVIGNIEQEVSDIASDSRKATDGALFVAVRGTLTDGHRYIPQAYTQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
               VV    +            V D   AL  LA A         T++ +TG+ GKTT 
Sbjct: 61  CRAFVVED--LPDEKPEGCCFVQVSDTAEALASLASAYYGHPSRHLTLVGVTGTNGKTTV 118

Query: 123 KEMLT-------------IALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELG 168
             +L                + +     +   ++     +    L R   D       + 
Sbjct: 119 ATLLYRLFRKMGYKAGLVSTVCNYVDDRSEPTTHTTPDPLALNALFRRMADAGCEYAFME 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +     + T +   HL     + E   AK   F+GL       +N D
Sbjct: 179 VSSHAAAQKRIGALDFDGGIFTNLTRDHLDYHGSVPEYLRAKKSFFDGLGAQAFALVNAD 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D    ++   + A     + ++     A+++ +  ++  +   M +  +   +       
Sbjct: 239 DKNGLVMVQNTRA----RVCTYALKSMANYRAKIVERHIDGMDMYMDDREVFVR------ 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L +            + L +         R++   ++  +  I + Y  
Sbjct: 289 -LVGDFNAYNLLCVYGASCELGQDREEVLRILSELTSVDGRFQTFTSKDGYVAIVD-YAH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
            P ++   +  +  ++   +   I V+G     G         +    +      + L+ 
Sbjct: 347 TPDALVNVLDTIRPLAKSHK--VITVVGA----GGNRDKGKRPIMAKEAARRSERLILTS 400

Query: 408 ----GFHVLALKDALP------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +                               GD V++  K 
Sbjct: 401 DNPRDEEPQEIIQEMAIGLSTEDRKKTLLITDRAEAIRTACMLAEKGDFVLIAGKG 456


>gi|324008320|gb|EGB77539.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Escherichia coli MS 57-2]
          Length = 471

 Score =  116 bits (290), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/453 (14%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +              E             + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L     A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSAHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKATDVNYHDSGATIRFSSSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    E              + DVV+V  K 
Sbjct: 411 AGYAKVMEGRAEAVTCAVIQAKENDVVLVAGKG 443


>gi|90020490|ref|YP_526317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
 gi|89950090|gb|ABD80105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharophagus degradans 2-40]
          Length = 518

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 83/510 (16%), Positives = 167/510 (32%), Gaps = 66/510 (12%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + Q +QG  +   P         V+G+S+D+R+++    F A+ G   DG  FI      
Sbjct: 8   IAQLLQGVWLAEAPLDASVANIKVSGVSLDNRTLSAGSVFIAVPGDKVDGRAFIEKCDSA 67

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
            A  ++   D      + ++PV  +  +   ++++A           TII ITG+ GKTT
Sbjct: 68  TA-AILAEADTFGVDLTGAVPVVHIPQLKQKISRVAANFYGHPSRSLTIIGITGTNGKTT 126

Query: 122 TKEMLTIALSSIKKTYACI----GSYNNHIGVPLTLARMPVDVDFGIF------------ 165
              +L   LS ++ +   +     +  +  G P+ L    +     +             
Sbjct: 127 CAYLLAQLLSKLQFSCGMVGTLGFAKFDECGAPVNLTDTGLTTPSALDCQKILAELQQQV 186

Query: 166 ---ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G  +     V  + A+ T ++  HL   + +EE A+ KA +F   E +  
Sbjct: 187 GAVAMEVSSHGLAQGRVADVDFNGAIFTNLSRDHLDYHASLEEYAATKAALFAREELSFV 246

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---QSWMEVQLQGK 279
           +    D     +L        I   YS G  +    Q             S   V     
Sbjct: 247 VINADDAVGVNILTNGVAPQAITYSYSLGGEQALVAQSENTIVAHSIEWGSSQTVAQLHT 306

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G     N+   L +++   A     +  ++     +    R +   +    
Sbjct: 307 PWGAAELATGLVGRYNLSNVLAVLTTACALGYPLVDVVAQVKTLQAAPGRLQRVNSSEQP 366

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +   Y   P ++     VLS+++ + +G+   V+G     G         L   ++  
Sbjct: 367 LAVFVDYAHTPDAL---EKVLSEVAAYTQGKLWVVIG----CGGNRDVGKRPLMAEVAER 419

Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--- 447
             + V L+  +            +   L                 +  ++  + D +   
Sbjct: 420 LANCVVLTSDNPRDENPELILKDMLAGLKNKDAAMVIADRKNAIEYAVANAAENDAIVIA 479

Query: 448 --------VVKSSNSCGFYRLI--NLLLEE 467
                   +VK        +L   + L+ +
Sbjct: 480 GKGHENYQLVKG------EKLPFDDALIAK 503


>gi|288958918|ref|YP_003449259.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
 gi|288911226|dbj|BAI72715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Azospirillum sp. B510]
          Length = 499

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 91/465 (19%), Positives = 154/465 (33%), Gaps = 42/465 (9%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
           Q    G  P   + G++ DSR++ P   F A+ G   DG  FI  A+ KGA  V+     
Sbjct: 20  QARPAGADPD--IAGLTADSRAVRPGFVFAALPGVKADGRAFIADALAKGAVAVLAPEGT 77

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIAL--- 130
               GS ++ +        A  ++A A    R   T++A+TG+ GKT+T +         
Sbjct: 78  ELPAGSTAL-LLTDPQPRLAFARMAAAFHGGRQPETVVAVTGTNGKTSTVQFAAQIWARM 136

Query: 131 --------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLT 179
                   +         G        P++L R          +   +  S  G  +F  
Sbjct: 137 GLPAGSLGTLGLLGPGLHGYGGMTTPDPVSLHRDLAAAKDAGIDHLAMEASSHGLEQFRL 196

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V    A  T +   HL     +E    AKA +F+ +   G I +   DS      A  
Sbjct: 197 DGVAIKAAGFTNLTLDHLDYHGTMEAYRDAKALLFQRVLPAGCIAVLNADSDDFHFFATI 256

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + + S+G    A+ ++   +  +    + + + G+ + V     G   A N+L  
Sbjct: 257 CDERGQRVLSYGL-AGAELRVTGVEPLAHGQRLSLTVLGRDVTVDLPLAGRFQAWNVLCA 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           LG+V     D   A+  L       GR +      N    T+  +  +   A      +V
Sbjct: 316 LGLVIGSGGDATRALATLPALEGVPGRLQHVATHPNGA--TVYVDFAHTPDA----LETV 369

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           L  +  H     + V G     G         +   L+        ++  +         
Sbjct: 370 LLALRSHAARDLVTVFG----CGGDRDRTKRPVMGALAARLADRAIVTDDNPRTEDPAFV 425

Query: 411 -VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               L  A    +  +                L  GDV+V+  K 
Sbjct: 426 RSEVLAGATGELAGRLEEIGDRAEAIRTAVRRLQPGDVLVIAGKG 470


>gi|148244321|ref|YP_001219015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
 gi|146326148|dbj|BAF61291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Vesicomyosocius okutanii HA]
          Length = 464

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 147/471 (31%), Gaps = 60/471 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL     + I       + G+ ++++S  P + F A++G   +G D+I  A+ KG
Sbjct: 1   MNISQLL----INIIQTEVDIEIKGLCLNTQSAQPGDLFIALQGESTNGTDYINQAIDKG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
              ++V++  +      +IP   V+++   L  LA       +K  +I +TG+ GKT+  
Sbjct: 57  CVAILVDSKEIE----CAIPSIRVNNLPIYLQTLANTFYNNATKIDVIGVTGTNGKTSVT 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLT--------------LARMPVDVDFGIFELGM 169
            +++  L  +      IG+        L                     D+ + + E  +
Sbjct: 113 YLISQLLEKLGVKNGLIGTLGITHNKQLYFNTTPDILTLYRVLHHYYQQDIHYAVIE--I 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +     +    AV T +   HL     ++E  + K  +F        I    D 
Sbjct: 171 SSHALAQNRIAGLNIKQAVFTNLTQDHLDYHHTLDEYKTTKQRLFTLNCVKSVILNQDDH 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   LK               K K             +       +Q          +G
Sbjct: 231 HYKHFLK-------------VSKGKKQTSYSLNDFNSIKIIQQGFLVQLDHYVFEIPFLG 277

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L TL  V  L    +  I  +       GR ++                Y   
Sbjct: 278 EFNLLNILATLNSVEALGFKRNDIIPLIYQLSTPPGRMQQINHYHAWID-------YAHT 330

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +++ AI+ L +  P+ +     V G     G             ++      + L+  
Sbjct: 331 PNALENAITTLQKHYPNFK--IRIVFG----CGGNRDRNKRSKMGRIASKLADSIILTND 384

Query: 410 HVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +            + + +  S  +   +           +L   + +++  
Sbjct: 385 NPRSENPQTIINDILNGIDDSFELDIIKDRQLAIETAMITLKKNECLIITG 435


>gi|86604919|ref|YP_473682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
 gi|86553461|gb|ABC98419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-3-3Ab]
          Length = 529

 Score =  116 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 86/485 (17%), Positives = 149/485 (30%), Gaps = 52/485 (10%)

Query: 6   TFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   LL           G +    V G+  DSR +   + F  + G   DG +F+  A+ 
Sbjct: 15  SLGQLLNQAGIQPQVVQGSLEGVQVRGLCADSRQVQAGDLFLGMPGSRVDGGEFVREALT 74

Query: 63  KGAGLVVVNTDMVASI----GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAIT 114
           +GA   ++  +    +    G  S P+  +    +  AL ++A A       + T++ +T
Sbjct: 75  RGAVAALIAQEAWEKVSGEAGGGSQPILVLPRSGINRALAQVAAAFYGFPARQLTLVGVT 134

Query: 115 GSVGKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV-------- 158
           G+ GKTTT  ++   L +  +             G         L    +          
Sbjct: 135 GTNGKTTTTHLIEHLLQAAGRPTALLGTLYNRWPGHCEVAPHTTLFPLELQRSLRQAKEA 194

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + E+  SH               AV T +   HL     +E    AKA +F+   
Sbjct: 195 GAEVAVMEV-SSHALAQDRAWGCS-FAAAVWTNLTQDHLDFHGSMENYWQAKATLFQPEY 252

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQ 277
             G   +N DD     L     A      YS    +          +         +   
Sbjct: 253 LQGRAVVNADDEGGRRLLETIPASLEPWAYSLQPLEGIPALWPGDVQVHPNGLQATLHTP 312

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             ++ V    +G     N+L  +G+   L   ++    AL  F    GR    R  L   
Sbjct: 313 LGTLAVAAPLVGSFNLANLLAAVGVALHLGIPLELIQAALPHFPGVPGR--MERVTLPGQ 370

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+I +  +          ++L  + P  +GR I V G     G             ++
Sbjct: 371 DITVIVDYAHTPDG----LENLLKALRPQVQGRLICVFG----CGGDRDRGKRPQMGRIA 422

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +            +   +P S                      GD VV
Sbjct: 423 ATWADRVVVTSDNPRTEDPQQILQDILAGIPGSPWAVEV-DRRQAIRLAILEAQPGDTVV 481

Query: 449 V--KS 451
           +  K 
Sbjct: 482 IAGKG 486


>gi|307298501|ref|ZP_07578304.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915666|gb|EFN46050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 498

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/481 (18%), Positives = 162/481 (33%), Gaps = 48/481 (9%)

Query: 5   WTFHDLLQAIQGHSIG----IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                +++ +    +            + I  DSR +  +  F  IKG ++D H      
Sbjct: 1   MRLSQVIELLGNSVLQVVNPGNVDPEFDHIESDSRGLKERNLFICIKGTNFDSHLIAREL 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVG 118
            +KGA  +V    M      + +P+  V       AL  +        K T I +TG+ G
Sbjct: 61  QRKGAVALVAE--MPIEDEEVVVPIVYVKSSRLVEALLTMEEYCHPYRKLTTIGVTGTNG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFE 166
           KTT   ++   LSS ++  + IG+  N +G             P+ LA++         E
Sbjct: 119 KTTITTLIYHVLSSFERKASLIGTVRNVVGENIYTNPKNTTPGPVELAKLLQLSTKLKSE 178

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S           +R  + +I+ +   HL      ++   +K ++F  L+  G  
Sbjct: 179 YFIMEVSSHSLSMNRVEGMRFDVGIISNVTRDHLDFHPTFDDYYRSKMKLFSLLKTNGIA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSME 282
            +N D      +      +    I ++G    +D+++             +Q     S  
Sbjct: 239 VVNGDKINIADI-----HISRNRITTYGFGDESDYRIENLDISRTGMDFTIQTPYGSSHR 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    IG H A N+   +  ++ L  D+D   KA+S F    GR +    A   GF  ++
Sbjct: 294 IYSRLIGEHNAYNIAAAVAALNSLNYDLDHIAKAISSFGGVPGRFEFVEEATKYGFDVVV 353

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +         +L        GR I V G     G  +      L   +S     
Sbjct: 354 DFAHTPDALE-----KLLKTARRLTPGRLILVFGA----GGSADKGKRPLMSEVSSKYSD 404

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
            V L+               L+  + +                  +     D+V++    
Sbjct: 405 VVILTSDDPKLDDPAEILQDLESGVDKFKPYLVIPDRREAISVALTLANRQDMVLIAG-R 463

Query: 454 S 454
            
Sbjct: 464 G 464


>gi|306844335|ref|ZP_07476927.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
 gi|306275407|gb|EFM57148.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brucella sp. BO1]
          Length = 488

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 36/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++       + G   +  + GI+ DSR++     F A+KG   DG  F   AV++G
Sbjct: 1   MKLKEIA-LFNELAPGEAGEVEITGITSDSRAVQRGFLFAALKGVKADGAAFAADAVKRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  ++   D   +I    +PV  VDD    L   A     +    ++A+TG+ GKT+   
Sbjct: 60  AVAIIAGKDT--AIADAGVPVLHVDDPRHVLAIAAAQFYGKQPEVMVAVTGTSGKTSVAS 117

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                 +      A IG+             +       +                +  S
Sbjct: 118 FTRQIWAYAGFPAANIGTTGVFSPTRSDYNSLTTPDPVELHRVLAELASEGVTHAAMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T +   H+   + I+E   AK  +F  L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVRLAAGAFTNLGRDHMDYHATIDEYLGAKMRLFNALLPKGAPAIIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            F     ++  L    + + G+       +   +   E+    V+++             
Sbjct: 238 QFSAQAVEAATLAGCDVKTVGR---KGNFIALKRVEHERFRQHVEVRIGEEIFEIELPLA 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +     +   V  A    ++   K   G+       +       +  +   
Sbjct: 295 GDFQVANALVAAGLAMVTGVPAAAAMRALALLKGAPGRLDLVGATEDGAPAYVDYAHKPE 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A      +VL+ + P   GR I V G     G         +   ++      V ++  +
Sbjct: 355 A----LENVLTSVRPFTTGRVIVVFG----CGGDRDKGKRPIMGEIASRLADVVIVTDDN 406

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      + +  +                 S +  GD +VV  K 
Sbjct: 407 PRSEVPAQIRSEIMAAATGATEIGDRREAIFTAVSMMQPGDTLVVAGKG 455


>gi|258404869|ref|YP_003197611.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797096|gb|ACV68033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfohalobium
           retbaense DSM 5692]
          Length = 488

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 85/447 (19%), Positives = 135/447 (30%), Gaps = 40/447 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           IDSR + P + F A+ G    G DF   A+++GA  V V                  DD 
Sbjct: 26  IDSRQVEPGDVFVALPGSTVHGSDFAPQALKRGAAAV-VAAPGTLPATLSQQNCVVHDDP 84

Query: 92  LGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-- 147
             AL  LA A     R    +I +TG+ GKTT   +L  AL  + +    IG+  N    
Sbjct: 85  REALGALAEAHFGTSRLGLELIGVTGTNGKTTVVGLLEYALQRMGRRVGVIGTIANRWPG 144

Query: 148 -------GVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                    P                     + +S     +  T  +R   AV+T ++  
Sbjct: 145 HEEPAALTTPGCWDLHACLSRMAADGVDTVCMEVSSHALAQRRTAGLRFSAAVLTNVSQD 204

Query: 196 HLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           HL     +E    A +       L + G   +N DD +   L+         +++S    
Sbjct: 205 HLDYHRDMESYFTAKSTLFNPSHLTENGVRVINADDPYGRRLRTGFPGAWGYSLHSEKAQ 264

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                +        +   +    QG+   +    +G H   N+ M      +        
Sbjct: 265 DPLLVEASVAGMDRKGIRLSCLWQGQQWVLPSPLVGRHNGANL-MAAQATLLALGFGPAD 323

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              LS   P  GR +R   A     F     + +A         +VL  ++     R + 
Sbjct: 324 AAVLSDAPPVPGRLERVENAAGLDIFVDYAHTPDA-------LENVLQAMTALDGNRLLV 376

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRSIHV 424
           V G     G                       L+  +         + D    L     V
Sbjct: 377 VFG----CGGDRDRTKRVPMGQAVARYADVAILTSDNPRHEDPEAIMADVRPGLADCPRV 432

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                           +V GD++VV  
Sbjct: 433 VEESDRKAAIALALQEMVPGDILVVTG 459


>gi|332762646|gb|EGJ92911.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri 4343-70]
 gi|333009179|gb|EGK28635.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella flexneri K-218]
          Length = 495

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/478 (15%), Positives = 147/478 (30%), Gaps = 47/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DS   A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSCVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           TTT ++L      + + +       N  +G  +              E            
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L     A+ +        + +  + +  +       + +         E+ 
Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++       
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVA 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 467


>gi|259907412|ref|YP_002647768.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
 gi|224963034|emb|CAX54517.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Erwinia pyrifoliae Ep1/96]
          Length = 490

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 69/469 (14%), Positives = 132/469 (28%), Gaps = 45/469 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
              +   P+  +  +++DSR  A  + F AIKG   DG  FI  A+ +G   V+   +  
Sbjct: 6   APWVPGAPERALREMTLDSRVAASADLFVAIKGHAADGRRFIPQAIAQGVAAVIAEAEGE 65

Query: 76  ASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           A  G +     +PV  +  +   L+ LA     +    +  I  +     T     +A  
Sbjct: 66  AEDGQIVEMHGVPVIYLAQLSQRLSALAGRFYQQPGEKLKLIGVTGTNGKTTTTQLLAQW 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEI 175
           +               G+   L+         +                  + +S  G +
Sbjct: 126 AQLLGETGAVLGTVGNGLYGQLSPAENTTGSAVDIQHLLASLVDKGASLAAMEISSHGLV 185

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     +    A  T ++  HL     +     A   +     + G   +N DD      
Sbjct: 186 QHRVAALPFAAAAFTNLSRDHLDYHGDM-ARYEAAKWLLFAEHQVGQAIINADDEVGRRW 244

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             K       T+ +  +       L+  K       + +          +    +G    
Sbjct: 245 LEKLPDAVAVTMENNLQPGCHGRWLKATKVDYHDGGARVHFSSSWGEGNIDSRLMGAFNV 304

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L+ L  +  L   +D      S   P  GR + +              + +A     
Sbjct: 305 SNLLVALATLLSLDYPLDALTATASQLQPVTGRMEVFSAPGKPTVVVDYAHTPDA----- 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-- 411
                 L+    H +GR   + G     G         L   ++      V ++  +   
Sbjct: 360 --LEKALAAARLHCKGRLWCLFG----CGGDRDKGKRPLMGAIAEQFADVVVITDDNPRS 413

Query: 412 -------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   L  +                      GD+V+V  K 
Sbjct: 414 EDPAAIVRDILSGLLDAGRARVVMGRAQAVTNTVMQAQQGDIVLVAGKG 462


>gi|240145944|ref|ZP_04744545.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
 gi|257201931|gb|EEV00216.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Roseburia intestinalis L1-82]
          Length = 506

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 152/478 (31%), Gaps = 39/478 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + I+   +       V  I  DSR IA +  F  + G   DGH +I  AV+KG
Sbjct: 1   MKLSKICEKIKYECLQGSMDAEVRDIIYDSRKIAKETMFVCMVGAVTDGHKYIPDAVEKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++VV  D  A+    +I V  V+    AL  ++ A       K   I +TG+ GKTTT
Sbjct: 61  ASVIVVERDEEAAQIPGTITVLKVESARYALALMSAALFDYPAEKLITIGLTGTKGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-----------LTLARMPVDVDFGIFE---LG 168
             M+   L +  K    IG+    IG               L RM   +     E   + 
Sbjct: 121 TYMIKNVLEAAGKKVGLIGTIGAMIGDEKIPSKNTTPESYELHRMFASMVEAGCEYAVME 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +S  G     T  +     V T ++P H+     +  EE    K+ +F   +       +
Sbjct: 181 VSSQGLKMDRTAGIMFDYGVFTNLSPDHIGPNEHASFEEYLECKSMLFRQCKIGILNADD 240

Query: 227 YDDSFF--ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                                        K  D          E   + +    K     
Sbjct: 241 EHSEAVAANHTCEIHSFGVEDNNEKTFLGKPLDLVAADLGFIKENGKLGMYFHVKGCMDC 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      ++  +L  + +      +    L   +  + +G+     +++ ++ +ID 
Sbjct: 301 EARVHIPGRFSVYNSLVTMLVCHLAGISDQAILDGLNKVQVKGRVEMLPVSKDYYLIIDY 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N     +     + + +  H +       G     G  S+    D+ EV        V
Sbjct: 361 AHN----EVSTRSVLTTLMEYHPKRLICVYGGG----GNRSKLRRYDMGEVTGEMADLCV 412

Query: 405 WLS----GFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451
                     +  + +         +      +       +   +   GD +V++ K 
Sbjct: 413 LTCDNPRDEEIRDINNDIKVGLAKSNGKYIEIDDRKEAIAYCMVNAQPGDMIVLLGKG 470


>gi|225619572|ref|YP_002720829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
 gi|225214391|gb|ACN83125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Brachyspira hyodysenteriae WA1]
          Length = 508

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 75/473 (15%), Positives = 161/473 (34%), Gaps = 51/473 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNT 72
                     + G + DSR I     F AIKG   DGH +I  A+   A +++     + 
Sbjct: 18  QLTKECLNTEIKGAAYDSRLIKKNYLFVAIKGLKDDGHKYIESAINNKASIIIYDNTADK 77

Query: 73  DMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128
           + +  +      +    V +    L  ++          I  I ITG+ GKTTT  +L  
Sbjct: 78  EFIKKLQDNHKDVHFVAVKNPRECLAYISAKLFYEPTKKINTIGITGTNGKTTTTYLLKS 137

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHL 172
            L + K     IG+  N IG                       +   +   + E   S  
Sbjct: 138 VLEANKNKTTLIGTIKNMIGKTEIKTNLTTPESIDLESIFDKSLKKGISHIVME--SSSQ 195

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                    +    A+ T I   HL     ++    AK ++F  L+++         +  
Sbjct: 196 ALAMNRCDYLNYDTAIFTNITEDHLDYHVDMQNYLKAKLKLFSLLKESSKKKKLAIVNID 255

Query: 233 E---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  +         + ++G ++ AD+  +     S+ +  E   +GK +  V   + 
Sbjct: 256 TDNFKQISNYIKKLGIKMVTYGINEKADYYGKVISLNSKNTEYEFYAKGKLISKVKLSM- 314

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+L +L I++ +  +     K++      +  G+       +  F +  + Y+  
Sbjct: 315 -LGRFNILNSLSILAYVCENKLDIEKSIKAMRKVQVEGRFEIVTKEKHPFIVAVD-YSHT 372

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P S++  +    +++P+     IAV G     G         +   ++        L+  
Sbjct: 373 PDSLENILVEAKKLNPNR---VIAVFG----CGGDRDRKKRPIMAEIAEKYADIAILTTD 425

Query: 410 H---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +  ++     + +    +  + +F  ++    + D++++  K 
Sbjct: 426 NQRTEDINQIMNDIEKGFKNNNYKKIIDRKEAIFEAVKE-AKENDIIIIAGKG 477


>gi|224581966|ref|YP_002635764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|224466493|gb|ACN44323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
          Length = 471

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 141/453 (31%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++A+TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++        I    D+     L +   A+ +      
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +    +     + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAEAVEYHDRGATIRFASSWGDGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K  +   P  GR + +              + +A           L     H  G
Sbjct: 302 LTNLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALQAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V   E              D DVV++  K 
Sbjct: 411 AGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 443


>gi|229826930|ref|ZP_04452999.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
 gi|229788548|gb|EEP24662.1| hypothetical protein GCWU000182_02314 [Abiotrophia defectiva ATCC
           49176]
          Length = 276

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 14/282 (4%)

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      + I  AK EIF+ L+ TG I LN DD     L    +  GI+ +
Sbjct: 1   MITNIGLCHLEFLKSRDGILKAKTEIFDFLKPTGHIILNVDDD---KLVTVENVKGIQPM 57

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +   ++KN  +      +  +     +  +  +  V+    G+HM  N L    +    +
Sbjct: 58  FFGIENKNGVWADEIKPEGLKGISCCIHTEKGNFPVLIPIPGHHMVYNALAGTAVGLTYS 117

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++     +    P  GR       ++ G +T++D+ YNANP SMKA++ VL+      
Sbjct: 118 LSLEEIKAGIESLQPVSGRFH----IIDTGKYTVVDDCYNANPVSMKASLDVLTD----A 169

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHV 424
            GR++A+LGDM E+G+     H ++       N+  +   G     + +A   +     +
Sbjct: 170 LGRKVAILGDMGELGKEEVEMHREVGVYAVSKNLDLLICMGELSQYMAEAAKHAAPTKPI 229

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +T + L   +   L  GD  +VK+S+  GF  ++  L +
Sbjct: 230 FHFKTKEELLQELPQILQKGDTALVKASHFMGFEDVVKELEK 271


>gi|270055566|gb|ACZ59059.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Staphylococcus aureus]
          Length = 680

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/485 (17%), Positives = 180/485 (37%), Gaps = 38/485 (7%)

Query: 4   LWTFHDLLQAIQGHS--IGIVPQGFVNGISI---------------D----SRSI--APQ 40
           + T   +   I G            +N                   +    SR +     
Sbjct: 1   MLTIEKIYHIIGGELKDAHNRESNEINDFETTYKFVKSKKTAYFSPNKETWSRELGRNKN 60

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
                      DG+D +     K  GL++  +    S    ++P   V D + A  KLA+
Sbjct: 61  AL---------DGNDLVDR-QNKEIGLIITES--YISNLKFTVPQIIVKDSVQAFKKLAI 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R + K  ++AITGS+GK++T+ ++T  LS          + N    +   + ++  + 
Sbjct: 109 YIRNQYKNPVVAITGSMGKSSTRMLITSLLSDFDVLENRGNN-NVRAAIYNNMLKLIKNP 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           DF + E  ++ +  +      ++P IA+IT I  AH S F  +++IA  K  +FEGL   
Sbjct: 168 DFAVIETSLNAINYLENTAVYLKPDIAIITGIGEAHFSTFKSVKDIAKIKTRVFEGLADN 227

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +N D  + + L  K+       +    K  +         + ++ +   +      
Sbjct: 228 GVAIVNNDTLYADYLVDKARENTNNVLTYSIKKDSNADLTVDNIKYNKGNIGLLINDQNK 287

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              ++                ++++ +  +      L  F P                 T
Sbjct: 288 ETDIYQLNTISEGMVSNTLASMLTLKSLKLPIKKDLLKNFKPFSKILALKEIQTKSHKLT 347

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D+++NA+  +M  AI   +  +    G +I  +G + ++G  S   H+ L + L   N
Sbjct: 348 LLDDTHNASLPAMINAIRAFNSQTRFYTGNKIIAIGKISDLGHKSSETHLQLVDELESCN 407

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFYR 459
             ++      +  + + + R+ ++ +    + L   ++    +  + ++KSS     F  
Sbjct: 408 ADYILCKDIELRQVVNKV-RNKNIIWYPNKELLINDLKYLCNENSLTLLKSSVTGTDFPE 466

Query: 460 LINLL 464
           +   L
Sbjct: 467 IAKSL 471


>gi|297571248|ref|YP_003697022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931595|gb|ADH92403.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 492

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 71/473 (15%), Positives = 148/473 (31%), Gaps = 46/473 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L+ +             + G + D+R + P + FFAI G    G  +   AV  GA 
Sbjct: 12  LGELIASCPAEY----ADVAITGATADNRQVEPGDLFFAIPGATAHGARYANSAVASGAV 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+ +TD  A   +  +PV  + DV   +  +A A       K T  A+TG+ GKTTT  
Sbjct: 68  AVITDTDG-ADFVTADVPVIILADVARHVGDIAAAVYGFPAQKLTTYAVTGTNGKTTTAF 126

Query: 125 MLTIALSSIKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE-----------LGMS 170
           M+   L+++ +T   IG+         +P  L          +             + +S
Sbjct: 127 MIDHILNTLGETTGLIGTVAVKIAGQEIPAQLTTPQPADLQAMLAALVERGGTSLVMEVS 186

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     +   +A  T +   HL   + + E   AKA +F   + +       D  
Sbjct: 187 SHAIAQGRIESINYSVAGFTNLTQDHLDYHNTLTEYFEAKALLFT-EKFSRVGVAITDTP 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + E L  + +            S+       ++   ++ +         ++    +  G 
Sbjct: 246 WGEELVKRGNERVAALA-----SQPDQPAGWRFTGQADGTLTLRGENWGTITTSTNLPGD 300

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N  + + +V+      +    AL   +    +       + +    ++D ++N + 
Sbjct: 301 FNIANAALAIAMVAKAGYSAEAISAALLASNGVNPQVPGRMEVVAEAPRIVVDFAHNEDA 360

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    +  + P  +G  I + G               L           + ++   
Sbjct: 361 -----LTKAIEALRPSTQGNLIVITGSAG----DRDVTKRPLMAKTVAERADVLVITDDD 411

Query: 411 V---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                       L   +P   +             + +     D +++     
Sbjct: 412 PHSEDPAHIRADLIAGIPTDTNWIEIADRREAITAMVTDACAEDTILIAG-RG 463


>gi|229086479|ref|ZP_04218651.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
 gi|228696796|gb|EEL49609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-44]
          Length = 491

 Score =  116 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       I E      + 
Sbjct: 116 SHIMDEVMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFHRMIEENVNSAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHDREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G   ++D   +     S  +   +    +S+ +   
Sbjct: 236 AVLNNDDPVAEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPNESINITMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L  +    +    + T +  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAAVAAGLVSGVPLQTIVDVVKKLTGVPGR---FEVVDGGQDYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H  L
Sbjct: 352 AHTPDSLENVLITAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAAVATKYATHAIL 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +           + D +      +  E             S     D++++  K 
Sbjct: 405 TSDNPRSEDPKLILDDMLTGAKGNNYEVIIDRKEAIFHAISEAKAEDIIIIAGKG 459


>gi|241765145|ref|ZP_04763133.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
 gi|241365224|gb|EER60071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidovorax delafieldii
           2AN]
          Length = 501

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 152/486 (31%), Gaps = 53/486 (10%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   L + HD +Q ++    G         +  DSR +AP + F A  G   DG   +  
Sbjct: 1   MIRQLTSSHDAVQWLRERVTGT--------LQTDSRLVAPGDGFIAWPGAATDGRAHVAD 52

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           A+ +GA   +V    V + G     +  +  +  A   +A            ++A+TG+ 
Sbjct: 53  AMVRGATACLVEQTGVEAFGFTGEHMAALPGLKAATGPMAAQWFGHPAQHLAVLAVTGTN 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI-------- 164
           GKT+T   L  AL+S+ K      +         +GVP  L    +     +        
Sbjct: 113 GKTSTAWWLAGALNSLSKQELHAPTRCALVGTLGMGVPPALESTGMTTPDPVRLQRAFRQ 172

Query: 165 --------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                     +  S +G            +A+ T     HL     + +   AK  +F+ 
Sbjct: 173 YADQGLGACAIEASSIGLAESRLDGTPIRVAIFTNFTQDHLDYHGSMADYWLAKRALFDW 232

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D +  +L        G   ++S      A    +      +     V  
Sbjct: 233 PGLQAAVINVDDPAGAQLHAE--LTGGALDLWSISAHGAARLAAQDIALGPQGLRFTVVE 290

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             + + +    IG++   N+L  L  +      +  A++A S   P  GR +R       
Sbjct: 291 GAQRVPLQTRVIGHYNVLNLLGVLATLRSQGVPLADAVRACSSLQPVPGRMQRLVAPGQP 350

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                    Y   P ++  A+  L  ++    G+   V G     G    +    L   +
Sbjct: 351 LVAVD----YAHTPDALDKALQALRPLAVERGGQLWCVFG----CGGDRDAGKRPLMGAV 402

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +  +   V ++  +  +         +         V                    DVV
Sbjct: 403 AQQHADWVVVTSDNPRSEEPAAILHQILQGTIAGETVRAEPDRAAAIALAIGEADAADVV 462

Query: 448 VV--KS 451
           ++  K 
Sbjct: 463 LIAGKG 468


>gi|228933511|ref|ZP_04096364.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228826240|gb|EEM72020.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
          Length = 171

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 4/161 (2%)

Query: 5   WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L + I G           ++G+ IDS+++     F  I     DGH+++  A+  
Sbjct: 10  MNLKKLEEVINGEGLHESFHHLEIHGVRIDSKNMKEGNLFVPIIRMK-DGHEYVKEAMDN 68

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA   +             +P+  VD+ L AL +LA   R      +I ITGS GKTT K
Sbjct: 69  GAVASLWKKSYG--TPPKGVPIIFVDETLFALQQLAQFYRREINVKVIGITGSNGKTTVK 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +++   L S  + +   G++N+ IG+PLT+  M  + +F  
Sbjct: 127 DIIEGILRSTYRVHKTKGNFNSQIGLPLTILEMKRNTEFLY 167


>gi|227872144|ref|ZP_03990514.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
 gi|227842002|gb|EEJ52262.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Oribacterium sinus F0268]
          Length = 495

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/462 (13%), Positives = 131/462 (28%), Gaps = 47/462 (10%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
             G   +   + +S DSR     + F  +KG   D HD I   ++KG  + VV  ++   
Sbjct: 14  LRGDGEREEFSSLSYDSRRAKAGDLFLCMKGSTMDSHDKIPELLEKGVRVFVVEKNLPDL 73

Query: 78  IGS----LSIPVFGVDDVLGALNKLAVAARLRSK-----------------ATIIAITGS 116
                    + +  V++   AL +L+                         A+++    +
Sbjct: 74  PKEMQDREDLCIVQVENGRKALAELSAFYFSYPSKEMLMIGITGTKGKTTTASMVRAILT 133

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
                   + T  +           +      +  T  +M       +  +  S  G   
Sbjct: 134 EAGYNCGLIGTTGIDYAGIHEESRNTTPESYTLQETFRKMKEKGCNAVV-MEASSQGFKM 192

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T  +     + T I   H+      E      AE      +  T       +      
Sbjct: 193 HRTDGILFDYGIFTNIEEDHIG-----ENEHKDFAEYKYYKSRIFTQSKTGLVNLDADFS 247

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH-HGIGYHMAQN 295
            +         +SF   K ADF   + +      ++  +   +  E             N
Sbjct: 248 EEFMENAECPCFSFALKKQADFMATEIEDLHRHDFLGCRFHFRHGEEDWEIWNHLPGRYN 307

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +   L  +S+ +          S     +  G+        G+  L+D ++NA       
Sbjct: 308 VYNALAAISLASLLGIKKEVVQSALRKIQVNGRMEVVLQRGGYTVLVDYAHNA-----MG 362

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
             ++L  +  +   R I V G     G  ++     + EV          L+  +     
Sbjct: 363 MKNLLETLKAYKPKRLIVVFG---CGGNRAKERRYGMGEVAGEMA-DFTILTADNSRYEK 418

Query: 413 ------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVV 447
                  ++  L +   +    E       +      +GD++
Sbjct: 419 TMDIISDIESTLSKKTKNYVKIEDRREAIRYALEQAEEGDLI 460


>gi|328956528|ref|YP_004373914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
 gi|328672852|gb|AEB28898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Carnobacterium sp. 17-4]
          Length = 535

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 84/507 (16%), Positives = 163/507 (32%), Gaps = 48/507 (9%)

Query: 5   WTFHDLLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
               DLL++++            + +  +  I+  S+ +     F  IKG   DGH++  
Sbjct: 1   MKLTDLLKSVKIDSSCHNQLKIELDKIDIKKIAYHSKEVGADTLFVCIKGHQTDGHNYAK 60

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
           HA  +GA +++V       I  + +    V D   AL  L+            I  +T +
Sbjct: 61  HAASQGATVIIVE----DFIEDIHVIQLKVSDSREALAILSSNFFDHPSKSMNIFGVTAT 116

Query: 117 VGKTTTKEMLTIALSSIKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFE- 166
            GKTT   M+     + +                   + +  P +             E 
Sbjct: 117 NGKTTITYMIEEIFKASQLKSGLIGTILVKIDKEIEMSRLTTPESYDLQQHFARMRDREI 176

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S         +     +     I+P H+      +    AKA +     K  T
Sbjct: 177 THVSMEVSSSALELKRVYNTDFDVVAFMNISPEHIKLHESFDAYFDAKASLIRNASKAST 236

Query: 223 IFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSE-------QSWME 273
             LN D+     L+ ++ A  I        G    +D +                 +   
Sbjct: 237 AILNLDEPLLIPLEKETEAQVITFGIENKSGTITVSDIRFSSGIPSFTVNIRKPFNTLSG 296

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK--RYR 331
             ++  S ++    +GYH   N L  L    +    ++   + +  F   E R +    +
Sbjct: 297 KTIEITSFDLEMSVLGYHSIYNALTALVTGLVNDLPIEDIQRGIKNFQGVERRFQVLYDK 356

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL-SQSFHI 390
                    L   + ++   ++         +     G          E+ E  ++ FH 
Sbjct: 357 EFKVIDDLLLNQNNIDSCMETISHLDYNELHLVHAIRGSNGP--AHSTEIAESLTKWFHK 414

Query: 391 -DLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDG 444
             +A+++     SHV           DA         I V + + +D   LF    L   
Sbjct: 415 MKIAKIILTTAPSHVNKIDEVTEEELDAFLKVMHQNKIEVTFFKELDDTLLFGVEQLNVA 474

Query: 445 DVVVVKSSNSC--GFYRLINLLLEEFP 469
           D++++  ++S   G  + + LL E +P
Sbjct: 475 DILLISGAHSMDQGARKTLELLKEIYP 501


>gi|260777068|ref|ZP_05885962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606734|gb|EEX33008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio coralliilyticus ATCC BAA-450]
          Length = 478

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 89/452 (19%), Positives = 150/452 (33%), Gaps = 40/452 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              VN    +S  I   + F   +G  +DGH +   AV +GA  V+ N  +      + I
Sbjct: 15  SLPVNQFKTNSAQIEVNDVFVCREGISHDGHSYAQQAVGRGAVAVIANRPL-----DIDI 69

Query: 84  PVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           PV   D    +L  + A       K   I +TG+ GKTT    L   L+    +      
Sbjct: 70  PVIMTDSYYQSLALVKAYYGHPHQKIKHIGVTGTNGKTTVSHCLNQILNQTTTSAYIGTL 129

Query: 143 YNNHIGVPLTLARMPVD--------VDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVI 189
                G    L     D              E     + +S     +     V   I +I
Sbjct: 130 GAKLAGSDYPLENTTPDGVTLLNLFHQMAQRETEFNLMELSSHALAQDRAGFVSLQIGII 189

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL      +    AK ++ + +   GT  +N DD       A   A G   + +
Sbjct: 190 TNIGRDHLDYHKTKDAYVQAKLQLIDRIAPNGTAVINLDDPHAA--AAIERASGRVNVVT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG             + +                V+  + +       + +    +    
Sbjct: 248 FGIENAQAHVFATNVRTTRFGSCFELRIDGECFDVNSQMPFTFNVENALAIAASLLSLGW 307

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             + I A ++       G+    +LN G   L+D ++NA+  S      +L  + P+ +G
Sbjct: 308 QSSRI-AAALQTIVAPDGRAQFLSLNNGATGLVDYAHNADGLS-----KLLEDVRPYTKG 361

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSI-HV 424
           R I V G   +  + +      +  + S    + V+      G     +  AL   +  V
Sbjct: 362 RLIVVTGVTGDRIQDAS----GIGVLCSQLADTAVFTSDNPMGVDQEDIFRALTSQVSKV 417

Query: 425 HYSE--TMDGLFLFIQSSLVDGDVVVV--KSS 452
            + E         F +   V GD++VV  K S
Sbjct: 418 PHFEISDRAEAIEFAKQLSVAGDLIVVCGKGS 449


>gi|291541039|emb|CBL14150.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           XB6B4]
          Length = 516

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 134/499 (26%), Gaps = 64/499 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           A  VVV+                     +   + +  + V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 S--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------- 156
              K  II ITG+ GKTTT  +    L         +G+   + G  +  A         
Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180

Query: 157 -------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                   V        + +S  G        +   I V   I P H+         A  
Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP-GEHASFAEY 239

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----- 264
                  L +     +N DD   E +                   +A  Q          
Sbjct: 240 LYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQKADIVAERIT 299

Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E             E +    G     N L  + +        D    AL      
Sbjct: 300 FSMKEGRLYSHFFTDGKEEFLLQMPGIFNVSNALAAILVARHFKIAQDVVKDALQRQTVP 359

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                          F  + +  +       +  ++L  +     GR + + G     G 
Sbjct: 360 GR----CENVRISDKFVFLVDYAHNE----MSLRNLLGTLRGFDPGRLVVIFG---CGGN 408

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLF 434
            S+     + E         +  S          + D +   I                 
Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468

Query: 435 LFIQSSLVDGDVVVV--KS 451
            +      +GD++V+  K 
Sbjct: 469 AYAFDHAREGDIIVLAGKG 487


>gi|330836875|ref|YP_004411516.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
 gi|329748778|gb|AEC02134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-d iaminopimelate
           ligase [Spirochaeta coccoides DSM 17374]
          Length = 535

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/508 (16%), Positives = 153/508 (30%), Gaps = 67/508 (13%)

Query: 1   MNPLWTFHDLLQAI----------QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH 50
           MN      +LL+             G     +P   +  I  DSR       + A +G H
Sbjct: 1   MNAPVRLSELLEFSSLAHTLVFLKDGRPF-PLPDIEITSIRHDSRVCDQGSIYCAFRGLH 59

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108
            DG DF+ +A++KGA  VV +   + S     +P   V+    A   L  +         
Sbjct: 60  EDGIDFMDNALEKGAAAVVTDR--LPSRPHEGVPYIVVEAPRQAYALLCGSFFGNPASAL 117

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------------VPL 151
            +I +TG+ GK+TT E L   L         + + +   G                 +  
Sbjct: 118 KVIGVTGTDGKSTTIEYLWQLLRGQGVRAGLLSTVSWDDGSGLVSSPYRQSTPEAWELHS 177

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLT-HLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            L+         +     SH   + +     +    A+ TT+   HL     +E    AK
Sbjct: 178 FLSSCRDHGLSIVILETTSHALSMEYDRLAGIAFSGAIYTTMTSEHLEFHGSLERYVDAK 237

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             +   L     + + +D++  + +       K     +    S G S+  D  L     
Sbjct: 238 LNLARRLLPGSPLVIPHDNARKDDIMKAAPQAKPFITAVHHGKSSGCSRKEDGILNGTCI 297

Query: 266 ------CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-LS 318
                    +                          +   L   ++  + +D  ++A ++
Sbjct: 298 SATVLGMEPEQLAFTFAINDKELTTLWRFPSPFPFLLSNALEAAAMAHSLIDIPLEAIIA 357

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F        R     N    T++ +  +   A    A  +      H +     V G  
Sbjct: 358 QFEKLSPVRGRAIPVPNSLGVTVLIDFAHTADA---FAHVMEEISRVHPKADITVVFGAA 414

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------LKDALPRSIHVH 425
              GE   +    +    + +  S + ++                   + DAL R   + 
Sbjct: 415 ---GERDTTKRAPMGAQAARW-CSRIIITDEDPRNEGYEAIRKDIEAGIPDALKRRRTIL 470

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++L  GDV+++  K 
Sbjct: 471 RIADRKRAIREAVANLNRGDVLLLLGKG 498


>gi|134102304|ref|YP_001107965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133914927|emb|CAM05040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 522

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 95/488 (19%), Positives = 158/488 (32%), Gaps = 63/488 (12%)

Query: 8   HDLLQAIQGHSI----GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             L + I    +           V G ++ ++ + P + F A+ G    G DF   A+  
Sbjct: 4   EQLAELIGARILRAPGQGPSGRPVTGATLRAQHVRPGDLFAALPGTRVHGADFAATALDA 63

Query: 64  GAGLVVVNTDMVASIGSLSIP--------VFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           GA  V+ +   V     L  P        +   DD   AL   A            I+ +
Sbjct: 64  GAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHDDPRAALGPAAAKIYGEPSKQLRILGV 123

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVD 161
           TG+ GKTTT  +L  AL++   T   +G+                   P   A + V V+
Sbjct: 124 TGTSGKTTTTYLLESALAAAGFTTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVE 183

Query: 162 FGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            G+  + M  S            R  +   T ++  HL     +++   AKA +F+G  +
Sbjct: 184 HGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLSQDHLDFHRDLDDYFQAKALLFDGRSE 243

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  + D         +          S     +      +     EQ +      G 
Sbjct: 244 HEVVCTDTDW-------GRKLVKPGTITVSTTGDASWTATDVEAFPTGEQEFTAHGPGGL 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ +     G     N L+ +GI+           + L+     +  G+  R AL Q F 
Sbjct: 297 SLRMRLRLPGPFNIANALLAIGILHAAEVPTWAIERGLAE---VDVPGRMERVALGQDFT 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D S+     S      VL       EGR I VLG     G         L    +  
Sbjct: 354 AVVDYSHKPGAVSA-----VLDAARAQAEGRVIVVLG----CGGDRDVAKRPLMGEAAAR 404

Query: 400 NISHVWLSGFH------------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGD 445
               + ++  +            +LA  +A+P +      E            +    GD
Sbjct: 405 RSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAAERGEVIERGDRREAIAEAVARASSGD 464

Query: 446 VVVV--KS 451
           +VVV  K 
Sbjct: 465 IVVVAGKG 472


>gi|160880627|ref|YP_001559595.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
 gi|160429293|gb|ABX42856.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           phytofermentans ISDg]
          Length = 493

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 82/478 (17%), Positives = 161/478 (33%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ +  DSR +     F  I G   DGH F+   + KG
Sbjct: 1   MKLTKLLERLTYQCKEGTVDREISTLCYDSRKVEKDSIFVCITGVVSDGHSFVNEVIAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           + ++V   ++        + +  V +   AL  L+ A       K   I ITG+ GKTTT
Sbjct: 61  STVIVAEKEVSV---PDGVTLLLVSNTREALAYLSAAYFDYPAEKLKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFEL 167
             M+   LS        IG+    IG               V    A+M  D    +  +
Sbjct: 118 TYMVHSILSEAGIKTGLIGTIETMIGDTVIPANNTTPESYLVQQYFAKMVEDGCTCVV-M 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +          I V T + P H+        EE  + K  +            
Sbjct: 177 EVSSQGLMLHRVSGFTFDIGVFTNMEPDHIGPGEHGSFEEYMACKGLL-------FKQCK 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +    +  +    T+ ++G S+ AD +       S+   + V  + K +    
Sbjct: 230 VGIANVDDKHMEQVLSGHTCTLETYGLSEKADLRAVDIDLHSKLGNLMVLYKVKGLCDFP 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +       +  +L  ++I      +  +   V    + +G+     +++ F  +ID +
Sbjct: 290 VQVNIPGKFTVYNSLTAIAICRHFNISTERIKEVLTKVKVKGRVEPVEVSKKFTMMIDYA 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NA      +  SVLS +  +   R + + G     G  S+    ++ E +S     +  
Sbjct: 350 HNA-----MSLQSVLSTLREYEPKRLVCLFG---CGGNRSKDRRFEMGE-ISSNLADYTI 400

Query: 406 LSGFHVL---------ALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   + R                    +  +GD++++  K 
Sbjct: 401 VTSDNPRFEEPQDILNDIVVGVKRGKGDYIAILDRKEAIRHSILTAKEGDIILIAGKG 458


>gi|332991935|gb|AEF01990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas sp. SN2]
          Length = 530

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 73/502 (14%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           +A+        P   + G+++DSR +  + AF A+KG   DG DFI  A+  GA +++  
Sbjct: 11  RALLAKFGIDAPDIRIEGLTLDSRDVNTKTAFVAVKGHERDGRDFIPQAISLGARVILAQ 70

Query: 72  TDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEM 125
           TD   + G + +     +  +  +   L+ LA A        +  +A+TG+ GKT+T ++
Sbjct: 71  TDDSQAHGQMEMRDHSVIISLYQLPSMLSALAAAFYDYPALKMMTVAVTGTNGKTSTVQL 130

Query: 126 LTIALSSIKKT---------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167
           LT    ++                       +       P  +    V  +F   E+   
Sbjct: 131 LTQLKDALGTRSASVGTLGSSVYEGENTQWVTTAAANTTPNAIRLQYVLAEFVQCEVRHT 190

Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI------------ 213
               S    ++     V+  IAV T +   HL     +EE A AK  +            
Sbjct: 191 AFEASSHALVQGRLSQVKTDIAVFTNLTRDHLDYHGTMEEYAKAKRLLLDQPGLEAVVLN 250

Query: 214 -----FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY--------SFGKSKNADFQL 260
                 +            D S  E+  +K     + T +        +  + ++     
Sbjct: 251 VNDSESQNWADYLDANAAKDGSSEEIAISKPRVTRVWTGFEPTDDVLATHKQPQDRHCFA 310

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 S     ++     +  +     G     N L  +  +       +  ++ ++  
Sbjct: 311 TNVSYHSSGIRFDLVSSWGTAPIELALFGSFNVSNTLSAISCLLAQGERFENVVRVVNGL 370

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
            P  GR + +    +         + +A          VL     H  G+   V G    
Sbjct: 371 QPVPGRMEVFPVGGSASVIVDYAHTPDA-------LEQVLKSAKTHTAGKVWCVFG---- 419

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMD 431
            G         L    +  +   + ++  +            +K  L R          +
Sbjct: 420 CGGDRDKGKRPLMGAAAEQHADVIVITTDNSRSESPESIASDIKAGLQRPNDAVEEADRE 479

Query: 432 GLFLFIQSSLVDGDVVVV--KS 451
               +   S  + D+++V  K 
Sbjct: 480 SAIRYCLDSADENDIIIVAGKG 501


>gi|293392864|ref|ZP_06637182.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
 gi|291424723|gb|EFE97934.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Serratia odorifera DSM 4582]
          Length = 471

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 72/453 (15%), Positives = 139/453 (30%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   V+   +  A+ G +     +PV 
Sbjct: 2   TLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAVIAEAEGEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK--------- 135
            +  +   L+ LA    L+   +  ++ +TG+ GKTTT ++L      + +         
Sbjct: 62  YLSQLNQRLSALAGRFYLQPAERLRLVGVTGTNGKTTTTQLLAQWSQLLGETAAVMGTVG 121

Query: 136 -----TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +          +     +       + +S  G ++     +    AV T
Sbjct: 122 NGLLGQVCPSENTTGSAVDVQHVLNDLAEHGATFAAMEVSSHGLVQNRVAALPFAAAVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  +F G E    I    DD     L     A+ +    + 
Sbjct: 182 NLSRDHLDYHGDMASYEAAKWSLFAGHEVGQAIINADDDVGQRWLAQLPDAVAVTMQGNL 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  + +          + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 QPGCRGRWLKATDVNYHDNGATVRFSSSWGDGEIESRLMGAFNVSNLLLALATLLSLGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K+ S   P  GR + +              + +A           L+    H +G
Sbjct: 302 LAALLKSGSQLQPVCGRMEVFTAPGKPTVVVDYAHTPDA-------LEKALAAARLHCQG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++      V ++  +            +   L  
Sbjct: 355 QLWCVFG----CGGDRDKGKRPLMGGIAEQFADRVVVTDDNPRTEEPQAIIADILTGLLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                   DVV+V  K 
Sbjct: 411 PGRALVIHGRAEAVTSAVMQAKQQDVVLVAGKG 443


>gi|291458599|ref|ZP_06597989.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419132|gb|EFE92851.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 518

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 139/475 (29%), Gaps = 44/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +  F + L  +    +   P+   V  +  DSR       F  ++G   D H F+   + 
Sbjct: 22  MAKFSEWLDGLDYELLHGDPEKVEVGEVIYDSRKAGRGSVFVCMRGSTTDSHSFLQKVIA 81

Query: 63  KGAGLVVVNTDMVASIGSL-----SIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           +G   +VV  +       L      I V  V     AL KL  A       +  +IA+TG
Sbjct: 82  EGTEAIVVEEESSMLPVDLREIYEGIAVVRVPSSREALAKLSAARFGFPSREMRVIAVTG 141

Query: 116 SVGKTTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTL-----ARMPVDVD 161
           + GKTTT  M+   L S  ++                      P +       R   D  
Sbjct: 142 TKGKTTTAHMIRSILESAGESCGLIGTTGVDYAGIHEETKNTTPESYELQDLFRRMADRG 201

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
            G   +  S  G   + T  +     + T I P H+              E      +  
Sbjct: 202 CGYVVMEASSQGFKLYRTDAIDFDYGIFTNIEPDHIGP-----NEHKDFEEYKYYKSRIF 256

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +       +  A     +Y FG  K+ADF     +  +   ++  + Q   M
Sbjct: 257 RQSRVGLINRDSPYAEELIAGAKCRMYCFGIDKSADFMAEGIQAVNSPDFVGSEFQVIGM 316

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +   +      N+   +  +S+ +         L         G+      N     +
Sbjct: 317 AKLDVRLNLPGKYNVYNAMAAISVCSLIGIRNSAILKALRLIRVNGRMELAFKNDTMSVI 376

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++NA         ++L  +  +   R + V G     G  S+     + E  +    
Sbjct: 377 VDYAHNA-----MGMENLLETLREYHPKRLVVVFG---CGGNRSKERRYGMGETAARLAD 428

Query: 402 SHVWLSG----FHVLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             V  +          +   +                      +   +   GD++
Sbjct: 429 FSVLTADNSRFERTEDIISDIKSRLVPLGGRYAEIPDRREAIEYAMKNAEKGDII 483


>gi|210617216|ref|ZP_03291460.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
 gi|210149417|gb|EEA80426.1| hypothetical protein CLONEX_03682 [Clostridium nexile DSM 1787]
          Length = 493

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 156/478 (32%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+ ++   +       +  ++ DSR +     F  I G   DGH+F+   ++K
Sbjct: 1   MMKLTKLLERLEYKVVQGNDDIEITELTNDSRRVCAGSVFVCISGAVVDGHEFVKEVLEK 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTT 121
           GA  V+V  ++ A      + V  V+D     AL   A       +  +I ITG+ GKTT
Sbjct: 61  GAKAVIVEKEVKAPEH---VTVIKVEDTRYALALASAAYFGYPAEQLKVIGITGTKGKTT 117

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFEL 167
           T  M+   L  +      IG+    IG                    R  VD       +
Sbjct: 118 TTYMVKSILEGVGHKVGLIGTIEAIIGDEVIPAKNTTPESFTIHQYFRKMVDAGCDAVVM 177

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S  G +   T  +   I + T +   H+        E+    K  +            
Sbjct: 178 EVSSQGLMLHRTAGIPFEIGIFTNLGEDHIGPNEHKDFEDYKRCKGLL-------FKQCR 230

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               +  +             I +FG ++ AD +    K  S   ++ V      +    
Sbjct: 231 IGIANVDDPYFEDVFRGATCQIETFGFAQKADLRAADTKLVSRPGYLGVSYHVSGLMDFD 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             I      ++  +L  +++                  + +G+     +++ F  +ID +
Sbjct: 291 VEIDIPGTFSVYNSLTAIAVCRHFDVPVEMIKKALKVAKVKGRIEMVKVSEDFTLMIDYA 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +NA      +  S+L+ +  +   R + + G     G  +++   ++ EV        + 
Sbjct: 351 HNA-----MSLESLLTTLKEYHPKRLVCLFG---CGGNRAKARRYEMGEVSGKLADLTII 402

Query: 406 LSGF----------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            S              + +        +V           +       GDV+V+  K 
Sbjct: 403 TSDNPRFEEPQDIIDDIKIGIGKTDGKYVEIC-DRKEAIRYAVDHAEVGDVIVLAGKG 459


>gi|325676972|ref|ZP_08156644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
 gi|325552272|gb|EGD21962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus equi ATCC 33707]
          Length = 547

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 154/500 (30%), Gaps = 62/500 (12%)

Query: 2   NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           NP +T   DL   I      IG      G V G+ + ++++   + F A+ G H  G +F
Sbjct: 22  NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81

Query: 57  ILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108
           +  A+  GA  V+ +   VA         + S+PV    D    L + +           
Sbjct: 82  VSVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLT 152
            II ITG+ GKTTT  ++   L++   T   +G+    +                   L 
Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            A     +D  + E+  SH   +  +   VR  I   T ++  HL      ++  +AK+ 
Sbjct: 202 AAMRERGIDTVVMEV-SSHALALGRV-DGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259

Query: 213 IFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +F                         +   +H      + +      AD+         
Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + +               +      N+       +I  +       AL+     +  G
Sbjct: 320 TGNQVFTLTG-PDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDVPG 378

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R    Q F  ++D ++            V++ +    +GR   V+G     G     
Sbjct: 379 RVERVERGQDFLAVVDYAHKPAALEA-----VIATLRGQTKGRIAVVVGA----GGDRDR 429

Query: 388 FHIDLAEVLSLYNISHVWLSG-----FHVLALKD-------ALPRSIHVHYSE--TMDGL 433
               L           + ++          A++        A+P +      E       
Sbjct: 430 GKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGEVREIGDRADA 489

Query: 434 FLFIQSSLVDGDVVVV--KS 451
                     GDVV+V  K 
Sbjct: 490 IAAAVRWARTGDVVLVAGKG 509


>gi|160883880|ref|ZP_02064883.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
 gi|156110610|gb|EDO12355.1| hypothetical protein BACOVA_01853 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 161/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL  +     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|315655248|ref|ZP_07908149.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
 gi|315490503|gb|EFU80127.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2 [Mobiluncus curtisii ATCC
           51333]
          Length = 516

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 137/479 (28%), Gaps = 43/479 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL QA+ G   G    G V G  ID+R++   E F A+ G H  G  F   A  +GAG
Sbjct: 22  VTDLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAG 79

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +   +A +  L IP   V DV     + A  A  +   + +   +TG+ GKTTT  
Sbjct: 80  AVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNQPCQQLSAWGVTGTNGKTTTTY 139

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170
           +L   L  +    + +G+    +G             P   A     V   +  +   +S
Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +       T ++  HL     +E+    KA +F        + +     
Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + + L  +    G     +   +        K  +                E        
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGYTELRLRAFDGKEASVQVRMP 318

Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +   L I         +           +           R  L      +I + 
Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  NP S K  +     +    +GR + V+G   +      S    +   ++       +
Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDSGKRPILGQIAAELADFTY 430

Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++          G     +                +             D VV+     
Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488


>gi|257463926|ref|ZP_05628311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|317061452|ref|ZP_07925937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
 gi|313687128|gb|EFS23963.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-meso-lanthionine ligase
           [Fusobacterium sp. D12]
          Length = 483

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 92/469 (19%), Positives = 159/469 (33%), Gaps = 47/469 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             +L+ ++   +         G+  DSR IA    F A++G   DGH FI  A+QKGA L
Sbjct: 6   DKILEGLEYKVLQEPETNIFTGMEHDSRKIAEGNIFIALEGDVVDGHSFIDMAIQKGARL 65

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125
           V V+ ++    G   I    + ++   L  LA       + K  I+ +TG+ GKTTT  +
Sbjct: 66  VFVSKEVSCQQG---IGYILIKNLRKHLGVLASNFYDWPQKKMKILGVTGTNGKTTTTYL 122

Query: 126 LTIALSSI-------KKTYACIGSYNNHIGVPL--TLARMPVDVDFGIFE---LGMSHLG 173
           L   L           +              P    L +M         E   + +S   
Sbjct: 123 LEQLLGEEKVARFGTIEYKIGKEVIEAPNTTPESLDLIKMIKKAHDQGLEYIVMEVSSHA 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 +++    A+ T +   HL     +E+   AK ++F  L   G    N DDS+ +
Sbjct: 183 LELGRVNMLEFDGAIFTNLTLDHLDYHKTMEQYFMAKRKLFLKLRGKGIKIFNIDDSYGK 242

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  + H +             AD Q +       +  +E+ L G   E     +G    
Sbjct: 243 RLWEEFHGVSYG-------MNKADVQGKILAFEGGREEIELSLFGNKKECKIQILGGFNL 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L +L +V  L    +     L       GR +   C  +          Y     ++
Sbjct: 296 YNLLGSLALVKELGMSDEDIFSKLGNLKGAPGRFETLDCGQDYMVIID----YAHTGDAL 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
           +  +  + +I     G+ I + G     G         +   ++      V L+  +   
Sbjct: 352 ENILQAVQEIKS---GKIITIFG----CGGDRDPRKRPIMAEIAERYSDFVVLTSDNPRT 404

Query: 413 --------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +K    +  H+   E               GD+V++  K 
Sbjct: 405 ENPESILEEVKSGFTKENHICILE-RAEAIAEGIRRANKGDMVLIAGKG 452


>gi|15639918|ref|NP_219369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189026156|ref|YP_001933928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|6093450|sp|O83903|MURE_TREPA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|3323248|gb|AAC65885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (murE) [Treponema pallidum subsp. pallidum str. Nichols]
 gi|189018731|gb|ACD71349.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Treponema pallidum subsp. pallidum SS14]
 gi|291060287|gb|ADD73022.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 540

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 68/487 (13%), Positives = 131/487 (26%), Gaps = 69/487 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V   D       + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL+  A A         T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 145 NHIG---VPLTLARMP---------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             +G   +P    +                    +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV   +   HL      E+    KA +F  L+    I        F +L A+  +     
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME------------------------ 282
             +              ++ +                                       
Sbjct: 264 EATHKPCFFFKRGTGAEQRTAACLERMPCTLLWVQTLPQISQALRLRFVLSTVQEPAQPA 323

Query: 283 ----VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                              +    + +      +           +    R +       
Sbjct: 324 QDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRVDMGQD 383

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F ++ + Y   P+S +  +  L+      + R + + G   E      +    +   ++ 
Sbjct: 384 FEVLID-YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGE----RDTQKRAMQGAIAS 438

Query: 399 YNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + L+                 A  +       +            I S     D+
Sbjct: 439 RYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQDL 498

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 499 VLLLGKG 505


>gi|291536619|emb|CBL09731.1| UDP-N-acetylmuramyl-tripeptide synthetases [Roseburia intestinalis
           M50/1]
          Length = 516

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/499 (16%), Positives = 134/499 (26%), Gaps = 64/499 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           A  VVV+                     +   + +  + V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 S--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------- 156
              K  II ITG+ GKTTT  +    L         +G+   + G  +  A         
Sbjct: 121 PAKKLKIIGITGTKGKTTTAFLTAGILKEAGYKTGMVGTIWTYNGKDVKKAGHTTPESSD 180

Query: 157 -------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                   V        + +S  G        +   I V   I P H+         A  
Sbjct: 181 LQRELAQMVSNGCVCCVMEVSSQGIKMQRVEGIFFDIGVFLNIEPDHIGP-GEHASFAEY 239

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK----- 264
                  L +     +N DD   E +                   +A  Q          
Sbjct: 240 LYCKSRLLRQCQAGIVNRDDRNTEKILFGHTCDIETFSVLGENGVDAPGQKADIVAERIT 299

Query: 265 -QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E             E +    G     N L  + +        D    AL      
Sbjct: 300 FSMKEGRLYSHFFTDGKEEFLLQIPGIFNVSNALAAILVARHFKIAQDVVKDALQRQTVP 359

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                          F  + +  +       +  ++L  +     GR + + G     G 
Sbjct: 360 GR----CENVRISDKFVFLVDYAHNE----MSLRNLLGTLRGFDPGRLVVIFG---CGGN 408

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHV-----HYSETMDGLF 434
            S+     + E         +  S          + D +   I                 
Sbjct: 409 RSKLRRGRMGETAGRLADFTILTSDNPRWEDPELILDDIESGIKGTSGAYIRIADRRAAV 468

Query: 435 LFIQSSLVDGDVVVV--KS 451
            +      +GD++V+  K 
Sbjct: 469 AYAFDHAREGDIIVLAGKG 487


>gi|260172403|ref|ZP_05758815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacteroides sp. D2]
 gi|315920699|ref|ZP_07916939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
 gi|313694574|gb|EFS31409.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Bacteroides sp. D2]
          Length = 482

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 91/474 (19%), Positives = 160/474 (33%), Gaps = 48/474 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSS-----------IKKTYACIGSYNNHIGVPLTLARM---PVDVDFGIFELGMS 170
           +L                             +    P+TL  +     D       + +S
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDEPIPTEHTTPDPITLNCLLGRMADEGCKYVFMEVS 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     ++    + T +   HL     +E    AK + F+ L K      N DD 
Sbjct: 181 SHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDDK 240

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++     +     +Y++     +DF+ R  +   E     + L   + E+    IG 
Sbjct: 241 NGLVMTQNIRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIGK 292

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+L   G   +L    +  + ALS  HP  GR    R              Y   P
Sbjct: 293 FNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHTP 348

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  +
Sbjct: 349 DALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSDN 403

Query: 411 VLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    + D L                              GDV++V  K 
Sbjct: 404 PRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|260578093|ref|ZP_05846014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
 gi|258603732|gb|EEW16988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Corynebacterium jeikeium ATCC 43734]
          Length = 536

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 78/531 (14%), Positives = 139/531 (26%), Gaps = 75/531 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L +   G   G      V   +I S+ +     F A+ G    G  F   A   
Sbjct: 1   MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADS 57

Query: 64  GAGLVVVNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            A  V+ +     +       +P   VD+V   +  +A         +   I ITG+ GK
Sbjct: 58  KAAAVLTDAAGQRIIDDAPTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFG-------IFE----- 166
           TTT  ++  AL         IG+      G P+  +    +           + E     
Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S         H V   +   T ++  HL     +E+   AKA +FE  E  G    
Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP-G 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  +    +  A+  K   +            +                    +  
Sbjct: 237 TAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRL 296

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--------------SVFHPKEGRGKRYR 331
              G    + +  ++G+             A               +V    + +     
Sbjct: 297 SIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRM 356

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             + +G   L    Y   P +++A +  L    P    R   VLG     G         
Sbjct: 357 QLVEEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA----GGNRDHDKRA 412

Query: 392 LAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSET 429
           +   ++      V+++  +           A+       +                    
Sbjct: 413 IMGRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPD 472

Query: 430 MDGLFLFIQSSLVDGDVVVV------KSSNSCG-------FYRLINLLLEE 467
                    +    GD VVV      K     G          L   L   
Sbjct: 473 RAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523


>gi|299536845|ref|ZP_07050152.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
 gi|298727669|gb|EFI68237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lysinibacillus fusiformis ZC1]
          Length = 464

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 172/470 (36%), Gaps = 48/470 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE--AFF-------------- 44
           M PL +  +L     G+ +       +   +   + +       F               
Sbjct: 1   MKPL-SVKNLAMITAGYLVHGSEDTLIQHGAYRLKQVKKSNTALFTSKRIVNWKSLEPLS 59

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
            +                    ++V +     S     + +  V +   A  K     R 
Sbjct: 60  PL--------------------VLVTDRVYRPSDIPDHVMLIQVANAEEAYWKFVHFYRS 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    I+AITG+ GKTTTKEM+   LS+ +K  A   S N+       L  +  D +  +
Sbjct: 100 QFHIPIVAITGTSGKTTTKEMIKHILSADRKVTATTLSSNSRTASLQYLLGIEDDTEAAV 159

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           FE  +   G++       +P I +IT I   HL+    +E    AK E+ + +   GT+ 
Sbjct: 160 FETAVGSPGDVTNAGRYFKPTIGIITNIGAHHLNYCKTLEGYIQAKGEMVDIIHPKGTLI 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N +D      K    +     +   GK  + DF+        +     +    KS +++
Sbjct: 220 INAEDMNT---KKIDVSRFRGRLIKVGKHDSCDFRASHIHYYQKGMKFILHHDRKSYDIL 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             G G H   N L  +  V  +   +     A           K+ +         L+D+
Sbjct: 277 VPGFGEHQVYNALAAIAAVHDMGMPIPV---AAKQLQSFRLLKKQLQLFEGINHSMLLDD 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +++    S++AA+ VL+++    +   IAV+G + ++G      H    E++    +  +
Sbjct: 334 TWSITTTSLEAALKVLNELGDGKKK--IAVIGTITDLGSWGYIIHEQAGELIQRIGVDVL 391

Query: 405 WLSGFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              G H   + D    L  S  V+  +    ++  +Q  + +  ++++K 
Sbjct: 392 ITIGEHARIMADHAVKLGFSAPVYTFKNSTLVYPLLQKIVDENTIILIKG 441


>gi|314934152|ref|ZP_07841513.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
 gi|313653057|gb|EFS16818.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Staphylococcus caprae C87]
          Length = 210

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 8/185 (4%)

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  +N  + + I   L    +T    ++     +  G R          T+
Sbjct: 33  SFTLPILGTHNMKNATIAIAIGHELGLSYETIKDNINH---VKLTGMRMERHQTTNNVTV 89

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I+++YNA+P SMKAAI  LS +    EGR+I +L D+ E+GE SQS H ++   L+   I
Sbjct: 90  INDAYNASPTSMKAAIDTLSSM----EGRKILILADVLELGENSQSMHEEVGAYLNNKTI 145

Query: 402 SHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             ++  G     + +          + +    L   +++ + + D ++VK S       +
Sbjct: 146 EVLYTYGDEARFIFNTGQNEVTTAQHFDDKSELIKELKTIVKENDKILVKGSRGMKLEEV 205

Query: 461 INLLL 465
           +  L+
Sbjct: 206 VEALI 210


>gi|239947621|ref|ZP_04699374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239921897|gb|EER21921.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 528

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/504 (15%), Positives = 153/504 (30%), Gaps = 99/504 (19%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V G+SI+S+++  ++ FFAIKG + DG+DFI  A+ + A LV+ +      I      V 
Sbjct: 14  VKGLSINSKTVKDKDVFFAIKGQNVDGNDFIKDALDQAAALVITDNKKNIVID----KVI 69

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+DV  AL +       +    + A+TG+ GK++    +    S + K  A IG+    
Sbjct: 70  YVEDVQVALYEAIEIFYPKKPKNLTAVTGTNGKSSVVSYIVQTYSLLGKKTASIGTIG-- 127

Query: 147 IGVPLTLARMPVDVDFG---------------------IFELGMSHLGEIRFLTHLVRPH 185
            G       +  DV                              S  G  +     ++ +
Sbjct: 128 -GEIFGCDNLINDVPELTTLDYLSFRKIAHNLAENGIEYLAFEASSHGLDQARLGEIKVN 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--------------- 230
           IA  T+ +  HL      E    AK ++F            +                  
Sbjct: 187 IACFTSFSQDHLDYHHTKENYLLAKLKLFTRHLSKFASREEFKGDTERRTAAYTSDRADS 246

Query: 231 --------------------------------FFELLKAKSHALGIKTIYSFGKSKNADF 258
                                             E ++     L    I      K  D 
Sbjct: 247 STGLTYKLPLEAKFGKMSTDHLLHSGLAILNSDIEEIEFVKDYLHNHNIKFITVGKKGDL 306

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           ++ +     +   +      +        IG   A N+L+    V     D +  I+ L+
Sbjct: 307 EITRINSSLKGQNINFTFNNREYNFNTPIIGSFQASNLLIAALSVHYTGFDFNKIIEILT 366

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
              P +GR +R         ++   ++       +K             + +   V G  
Sbjct: 367 QVKPVKGRMERIDNTNIFVDYSHTPDALEKALTELKNI--------KLRDSKLSVVFG-- 416

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429
              G         +   ++      + ++  +            +   + ++ +   +  
Sbjct: 417 --CGGNRDKTKRSIMGQIAAKLADTIIITDDNPRNENPKLIRTEIISGIDKADYTEIA-N 473

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
            +    +  ++L   D++++  K 
Sbjct: 474 REEAIKYGINNLKQDDILLIAGKG 497


>gi|302875394|ref|YP_003844027.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307688992|ref|ZP_07631438.1| Mur ligase middle domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|302578251|gb|ADL52263.1| Mur ligase middle domain protein [Clostridium cellulovorans 743B]
          Length = 471

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 90/471 (19%), Positives = 174/471 (36%), Gaps = 44/471 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63
           +T  ++   + G  +       +   S       P    F ++         FI + +  
Sbjct: 4   YTCDEISNLVDGIVLYWDNNKSIERFSS-----YPNCPLFRSL--------HFIKNHINN 50

Query: 64  G-----------AGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                          ++++      + ++ S  I V  V ++  A   +    R +    
Sbjct: 51  KDNLISRLETYKVSGIIIDNCDLIDLKNLSSKGIGVILVKNLNKAYEDIVQLYRKQFDIP 110

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            + + GS GKTTTKEML   L +   T     + N+  GV   L ++       + E GM
Sbjct: 111 FVQVIGSSGKTTTKEMLGSILRTKLNTLVSFENLNSPSGVAYNLLKLTAKHQAAVLETGM 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              G I   T +++P   ++T I  AHL     +E I  AK+E    L     + +N DD
Sbjct: 171 RSKGVISRSTSIIQPDYVIVTCIHRAHLVTVGSLENIIKAKSEFIGFLSPESLVIINGDD 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + L    +   +    +FG SK+ D   ++ +    +   +   +   ++   + IG
Sbjct: 231 ENCKKLPLDQYQGKV---LTFGMSKSCDIWAKEIQYDDFKMHFKACTRNLEIDCTINTIG 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N L  + +   L        + L  F P      R +       F +I++++NAN
Sbjct: 288 IYNVLNALAAIILSLNLGFSKQEIQEGLLQFKP---MYNRLQVVKRNKNFCIINDTFNAN 344

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDM----CEMGELSQSFHIDLAEVLSLYNISHVW 405
           P S  A +  +   +       I VLGD      +  E  +S H ++ +  +   +  + 
Sbjct: 345 PDSTIALVEEIQNFAQ--GKPIILVLGDFENPNYQDTEYPESVHYEVGKKAASAMLYRLI 402

Query: 406 LSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +L      +     +       +    F++ S+V  ++++ KSS
Sbjct: 403 AIGKWADSLIKGAVDNGYPIKNTGCFTKPEYAIDFLKQSIVKNNIIIFKSS 453


>gi|71891924|ref|YP_277654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|71796030|gb|AAZ40781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 503

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 69/467 (14%), Positives = 143/467 (30%), Gaps = 43/467 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                    + G+ +DSR+I     F A+KG   DG  +I +A++KGA  V++ +    +
Sbjct: 15  VFNNPTSPALTGMELDSRNIVLGNLFVAVKGSKTDGRLYIDYAIKKGASAVLLESWSDIT 74

Query: 78  IGSL------SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIA 129
           I          IPV  V+ +   L+ +A +          +I +TG+ GKTT   +L   
Sbjct: 75  ISKKYSYHLNKIPVVHVNYLPRYLSDIAGSFYNHPSRFLDLIGVTGTNGKTTITHLLARW 134

Query: 130 LS--------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           +                +        +          +    V        + +S  G  
Sbjct: 135 VQLLGKKSAVMGTLGNGMLNNMCLSNNTTCSSIDAQKILSQFVKDKITFVAMEVSSHGLN 194

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           ++    +    A+ T ++  HL     + + + +K  +F+ L     I    D      L
Sbjct: 195 QYRVDALYFKAAIFTNLSHDHLDYHGNVMQYSMSKWRLFDELCVEKYIINADDPVGCRWL 254

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                A+ +    +        +    K       + +          +    +G     
Sbjct: 255 YYLPQAIAVTITRNLPFFWKGKWICALKVNYHIHGTDITFDSSWGHGVIHSQLLGEFNVS 314

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ LG + IL   +   +   S   P  GR + +R             + +A    + 
Sbjct: 315 NLLLALGTLLILGYPLSLLVHTSSQLQPVAGRMEVFRSHGYPTVIVDYAHTPDALEKVLI 374

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
           +             G+   V G     G         L   +      ++ ++       
Sbjct: 375 SIRQFYYW------GQLWCVFG----CGGDRDPSKRALMGCIVSRYADYIIITNDNPRTE 424

Query: 410 HVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++ + + R I      +   +                DV+++  
Sbjct: 425 EPQSIINDITRGITHRKKIIKIIQNRCCAIQTAILKASLEDVILISG 471


>gi|297170220|gb|ADI21258.1| UDP-N-acetylmuramyl pentapeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 385

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/205 (27%), Positives = 96/205 (46%), Gaps = 12/205 (5%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L Q +      +     +  I  DSR     + F  +KG +YD   ++   ++KGA
Sbjct: 9   SLRELSQILG--FENVQTDANIERIVFDSRIARKGDLFIPLKGKNYDAEIYVEEVLKKGA 66

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V+    +  S          VDDV  +L  +     +++K  +I ITGS GKTT K+M
Sbjct: 67  S-VITKQKIFGSS-------IVVDDVYSSLLDICANKLIKNKGKVIFITGSYGKTTIKDM 118

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L      +A   + NN  G+P T+  MP + ++ + E G  ++G+   ++  +   
Sbjct: 119 LKSLLGDK--CHASKDNENNEFGIPFTILSMPKNTEYLVVECGARNIGDFDLISEKLYCD 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAK 210
           + ++T IA  HLS F  IE I+  K
Sbjct: 177 VFILTAIASNHLSTFKNIENISKTK 201



 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
              I VLGDM E+GE     H ++   L+ + I   +L+G     +   +  + ++++ E
Sbjct: 290 NNTILVLGDMAELGEDENKKHENVLNHLADFQI---FLTGKIFKEVSKKIF-NKNLNFFE 345

Query: 429 TMDGL-FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                   ++   L  G  V  K S S      + LL+ +
Sbjct: 346 NKQDFPKNYLIKQLKAGKKVYFKGSRSSKMETYLELLIND 385


>gi|238898850|ref|YP_002924532.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466610|gb|ACQ68384.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 502

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 151/460 (32%), Gaps = 44/460 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--- 81
             + GI++ S  +   + F AI G   DG  +I  A+ +GAG ++   + V +       
Sbjct: 28  ITIKGITLKSDEVTTGDLFVAIVGHETDGRHYIPQALSQGAGAILAEAEGVVNDDVSVDQ 87

Query: 82  --SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK--- 134
              +P+  + ++   L++LA         +  ++ ITG+ GKTT  ++L     ++    
Sbjct: 88  IQGVPIVYLFNLNQYLSQLAGEFYHHPASQLNLVGITGTNGKTTNTQLLAQWTMALGEVS 147

Query: 135 -----------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                      +  +   +          +    +        + +S    ++     + 
Sbjct: 148 AVLGTLGNGLLRQLSSNQNTTASAIEVQQILSNMLTHKATFAAMEVSSHALVQHRVAALP 207

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              +V + ++  HL     +     AK  +F   E    I    D+     L    +A+ 
Sbjct: 208 FAASVFSNLSRDHLDYHGDMANYEIAKKSLFLDHESKNHIINVDDEVGQRWLPELPNAVA 267

Query: 244 IKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           + T +         +   +K +     + +         E+    +G     N+L+TL  
Sbjct: 268 VSTSHQIPSGLQGAWLSAQKIQYHENGALIFFDSSWGKGELKSPLLGAFNVNNILLTLAT 327

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  L   +D  +KA S   P  GR + ++             + +A           L+ 
Sbjct: 328 LLALKYPLDALLKAASKLQPIPGRMEVFKKVGRPTVIVDYAHTPDA-------LKQALAA 380

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
              H +G+   + G     G         L   ++      + ++  +            
Sbjct: 381 SRMHCQGKLWCLFG----CGGDRDKGKRPLMGKIAETLADQMVITDDNPRTESPKMITAD 436

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   + ++      +        I +  +  DV+++  K 
Sbjct: 437 ILKGVLKTDRASVIQDRTEAITHILNQAMPEDVILIAGKG 476


>gi|154500745|ref|ZP_02038783.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
 gi|150270634|gb|EDM97943.1| hypothetical protein BACCAP_04423 [Bacteroides capillosus ATCC
           29799]
          Length = 486

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 77/470 (16%), Positives = 137/470 (29%), Gaps = 57/470 (12%)

Query: 15  QGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
               +G        ++GIS D+R+I P E F A+ G   DGH F+  AV+KGA  V+ + 
Sbjct: 9   GVALLGGFADEDVEISGISYDTRTIRPGELFVALTGYKTDGHRFLREAVKKGAAAVICHK 68

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA- 129
                      P     D   AL  ++     R   + T+I +TG+ GKTTT  +L    
Sbjct: 69  APEEPG-----PWLIAADTRAALAAVSANWFGRPADELTVIGVTGTNGKTTTTYLLKAML 123

Query: 130 ---------LSSIKKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLG 173
                    L    +          H   P +                  + E+  SH  
Sbjct: 124 EGVLGAKVGLMGTNQNMIGEKVIPAHRTTPESWEVQKLLRDMADSGCTHVVMEV-SSHAL 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            +  +  +    + + T +   HL     +EE    K  +F           +    ++ 
Sbjct: 183 ALHRVDGIA-FQVGIFTNLTRDHLDFHGTMEEYRRVKGLLFRQTGTAVLNLDDEAGRYYA 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +           +        AD   +  +   ++   E    G    V     G    
Sbjct: 242 SIV------TCPALTYSENKDQADVTAKNIRLFPDRVEFEALTTGAIARVRLPIPGGFTI 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +     L   +     +L+     +GR +      +         + +A     
Sbjct: 296 YNALGVIACGLALKLPLPQVCASLAEAKGVKGRIEVVPTPTDYAVIIDYAHTPDA----- 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
               ++L+ +     GR I + G     G         +   ++      V L+      
Sbjct: 351 --LENILTTVRDFTPGRVICLFG----CGGDRDRSKRPVMGAIAAELADLVVLTSDNPRT 404

Query: 409 FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               A+   +   +                          GD VV+  K 
Sbjct: 405 EDPEAILADIQAGMEGSDTPCMVVPHRREAIRRALDEAKSGDTVVLAGKG 454


>gi|119478641|ref|ZP_01618544.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
 gi|119448418|gb|EAW29669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine gamma proteobacterium HTCC2143]
          Length = 508

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 154/457 (33%), Gaps = 41/457 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM--VASIGSLS 82
             ++GI  DSR IA    F A+ G   DG D+I  AV  GA  V+V         +   +
Sbjct: 27  IELSGIQSDSRKIAAGNLFLAVAGHAVDGRDYIAQAVANGAAAVLVERAGHSADKLNYPN 86

Query: 83  IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P+  V+++   L+++A           +I+ +TG+ GKT+  ++     + + ++   I
Sbjct: 87  VPIIAVENLNLKLSEIAGRFYNNPSHELSIVGVTGTNGKTSCTQLYMQIANLLGRSCGVI 146

Query: 141 ------GSYNNHIGVP--------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                      + G+           +     D +  +  + +S  G  +     V+  +
Sbjct: 147 GTLGAGIDGQLNEGLNTTPDAISIQKILAEWRDHELAVAAMEVSSHGLEQGRVADVQFEL 206

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL---NYDDSFFELLKAKSHALG 243
           A+ T ++  HL     +      KA +F        +     ++  +  + + A +  + 
Sbjct: 207 ALFTNLSRDHLDYHGSMLAYGETKARLFRQPGLKCAVINIDDHFGCALVDEMPATTDVIR 266

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                    + +AD  +   +         +     S+E+    +G     N++  +   
Sbjct: 267 YGVEPDARTNHSADVWVDNVRFHPSGVNARLHSDWGSVEINSPLLGEFNLSNLVAVICCF 326

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +    + +    +       GR +R   + +         + +            L  +
Sbjct: 327 GLQGFALSSIANVIPKLMTVPGRMERIVSSADITVVVDYAHTPDG-------LEKALLAM 379

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDAL 418
             H +G+   V G     G         L   L   +  HV ++  +        + D +
Sbjct: 380 RQHTDGKLWCVFG----CGGNRDHGKRPLMGALVQRHADHVVVTSDNPRNESAAEIIDEI 435

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +       E       F  ++ + GD V++  K 
Sbjct: 436 LGGVDRPSMVEEDRGLAIQFAIANALPGDCVLIAGKG 472


>gi|299147134|ref|ZP_07040201.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
 gi|298515019|gb|EFI38901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 165/475 (34%), Gaps = 50/475 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++LL+AIQ   +       + G++IDSR +   + F A++G   DGH +I  A+ KGA 
Sbjct: 3   LNELLKAIQPVEVAGDSNIEITGVNIDSRLVEAGQLFMAMRGTQADGHAYIPAAIAKGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            ++     +       I    V D   A+ K+A        SK  ++ +TG+ GKTT   
Sbjct: 63  AILCED--MPEEPVAGITYVRVKDSEDAVGKIATTFYGDPTSKLELVGVTGTNGKTTIAT 120

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           +L             I +  N+I                +   L RM  +    +  + +
Sbjct: 121 LLYNTFRYFGYKVGLISTVCNYIDDESIPTEHTTPDPITLNCLLGRMADEGCKYV-FMEV 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +     ++    + T +   HL     +E    AK + F+ L K      N DD
Sbjct: 180 SSHSIAQKRISGLKFAGGIFTNLTRDHLDYHKTVENYLKAKKKFFDDLPKNAFSLTNLDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++   + +     +Y++     +DF+ R  +   E     + L   + E+    IG
Sbjct: 240 KNGLVMTQNTRS----KVYTYSLRSLSDFKGRVLESHFEG----MLLDFNNHELAVQFIG 291

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N+L   G   +L    +  + ALS  HP  GR    R              Y   
Sbjct: 292 KFNASNLLAVFGAAVLLGKKEEEVLVALSTLHPVAGRFDAVRSPQGITAIVD----YAHT 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P ++   ++ +  +   G+G+ I V+G     G         +    +      V ++  
Sbjct: 348 PDALINVLNAIHGV-LEGKGKVITVVGA----GGNRDKGKRPIMAKEAAKASDRVIITSD 402

Query: 410 HVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + D L                              GDV++V  K 
Sbjct: 403 NPRFEEPQDIINDMLAGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKG 457


>gi|256830376|ref|YP_003159104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579552|gb|ACU90688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 476

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 146/452 (32%), Gaps = 45/452 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+   S ++ P + F A+ G   DG  FI  AV +GA  VVV+ + VA   +  +    
Sbjct: 17  TGLRTHSGAVTPGDVFVALSGTRVDGARFIEDAVARGAR-VVVHKEGVAVAPAAGVSTLA 75

Query: 88  VDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI--------KKTY 137
           V +    L  LA AA         I+ +TG+ GKTTT  ++   LS+             
Sbjct: 76  VPNPAQTLGVLARAACGTESRLPRIVGVTGTNGKTTTAHLIHFLLSANGLMTGLIGTVHC 135

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITT 191
           +  G+             +   +   + +      + +S     +  T  +   + V + 
Sbjct: 136 SWPGAKVAATMTTPDCLSLHGIIGRMVRDGVEDLVMEVSSHALDQERTAGLPMAVGVFSN 195

Query: 192 IAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           +   HL     +E    AK+ +F +G  +     +N DD +   LK     L    + S 
Sbjct: 196 LTQDHLDYHGDMERYFEAKSRLFLDGPARCARGLVNVDDEYGRRLKMMRPDLLGFGLDS- 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              ++A+ + R     +E   + +   G + E+    +G H A N+L  +G   +L    
Sbjct: 255 ---EDAELRCRILGAGTEGMTLGISHDGNAWELRTSLVGRHNAYNLLSAVGAGLLLGLTA 311

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                            +         F             S+         +   G  R
Sbjct: 312 AQCACLSQALGAPGRLERVPNTRELNIFIDYAHTPDALEKVSV--------ALKSMGFKR 363

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421
            I V G     G    +    L       +     ++  +            ++  L  +
Sbjct: 364 LITVFG----CGGDRDASKRPLMGAAVARHADVAVVTSDNPRTEDPESILDQIEPGLAGA 419

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V               S+  GD +++  K 
Sbjct: 420 RLVLREVDRRKAIALAVQSMQPGDALLIAGKG 451


>gi|126650750|ref|ZP_01722966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
 gi|126592415|gb|EAZ86433.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bacillus sp. B14905]
          Length = 497

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 156/388 (40%), Gaps = 11/388 (2%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           ++V +     +     I +  V +V  A  +     R +    I+AITG+ GKTTTKEM+
Sbjct: 95  VIVTDRAYRPNDIPTQIIIIQVANVDEAYWRFVHFYRNQFHIPIVAITGTSGKTTTKEMI 154

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              LS+ ++  A   S N+       L  +  D +  +FE  +   G++       +P I
Sbjct: 155 KHILSADRQVTATTLSSNSRTASLQYLLNIEDDTEAAVFETAVGSPGDVTNAGKYFKPTI 214

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   HL+    +E    AK E+ + ++  GT+ +N +D   + L     +     
Sbjct: 215 GIITNIGAHHLNYCKTLEGYIQAKGEMLDIIQPKGTLIINAEDMNTKKL---DISKFNGR 271

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +   G   +  F+    +   +    ++    K  ++   G G H   N L  +     +
Sbjct: 272 VLKVGIHDSCHFRASHIQYYQKGMNFKLHHIRKIYDIFVPGFGQHQVYNALAAIAAAYEI 331

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +     A +         K+ +         L+D++++    S++A + VL+ +   
Sbjct: 332 GVPIPV---AANQLQSFRQLKKQLQLFEGINHSMLLDDTWSITTTSLEAGLKVLNDLGEG 388

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA---LPRSIH 423
            +   IAV+G + ++G      H    E++    +  +   G H   + D    L  +  
Sbjct: 389 KKK--IAVIGTITDLGSWGYIIHEQAGELIHRIGVDVLITIGEHARIMADHAVNLGFNAP 446

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           V+  +    ++  +Q  + +  +V++K 
Sbjct: 447 VYTYKNSTLVYPLLQKIVDENTIVLIKG 474


>gi|312140147|ref|YP_004007483.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate-2,6-dia minopimelate
           ligase mure [Rhodococcus equi 103S]
 gi|311889486|emb|CBH48803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Rhodococcus equi 103S]
          Length = 547

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 85/500 (17%), Positives = 154/500 (30%), Gaps = 62/500 (12%)

Query: 2   NPLWT-FHDLLQAIQGH--SIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           NP +T   DL   I      IG      G V G+ + ++++   + F A+ G H  G +F
Sbjct: 22  NPPFTALTDLAARIGARLEWIGSPGADAGEVTGVELRAQAVRRGDLFAALPGAHTHGAEF 81

Query: 57  ILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KA 108
           +  A+  GA  V+ +   VA         + S+PV    D    L + +           
Sbjct: 82  VGVAIAAGASAVLTDDAGVAMLAAGTEESAASLPVLVHPDPRQVLGEASATIYGHPSEHM 141

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLT 152
            II ITG+ GKTTT  ++   L++   T   +G+    +                   L 
Sbjct: 142 QIIGITGTSGKTTTSYLVEAGLAAAGHTIGLVGTIETRVAGHRVPSALTTPEAPQLHALF 201

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            A     +D  + E+  SH   +  +   VR  I   T ++  HL      ++  +AK+ 
Sbjct: 202 AAMRERGIDTVVMEV-SSHALALGRV-DGVRFSIGAFTNLSQDHLDFHKDFDDYFNAKSR 259

Query: 213 IFEGLEKTGTIFLNYDDS-----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +F                         +   +H      + +      AD+         
Sbjct: 260 LFAADSAVCAQRAVICTDDRWGVRMAEIARHAHPADADAVETVSTHPPADWTATATSSSD 319

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
             + +               +      N+       +I  +       AL+     +  G
Sbjct: 320 TGNQVFTLTG-PDGTPRTATLRLPGHYNVANAALAAAICCSAGADVDAALAGIANVDVPG 378

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +  R    Q F  ++D ++            V++ +    +GR   V+G     G     
Sbjct: 379 RVERVERGQDFLAVVDYAHKPAALEA-----VIATLRGQTKGRIAVVVGA----GGDRDR 429

Query: 388 FHIDLAEVLSLYNISHVWLSG-----FHVLALKD-------ALPRSIHVHYSE--TMDGL 433
               L           + ++          A++        A+P +      E       
Sbjct: 430 GKRPLMGEAGARGADLLVVTDDNPRTEDPAAIRAQMLAGAVAVPDAERGAVREIGDRAEA 489

Query: 434 FLFIQSSLVDGDVVVV--KS 451
                     GDVV+V  K 
Sbjct: 490 IAAAVRWARTGDVVLVAGKG 509


>gi|99036017|ref|ZP_01315056.1| hypothetical protein Wendoof_01000094 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 163

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL  F   +GRG  ++   N+ +  LID+SYNA+PASMK AI  LS  S   +   +A+L
Sbjct: 14  ALKNFSVAKGRGNIHKVKCNKKYIHLIDDSYNASPASMKTAIKTLSTYSNQRK---VALL 70

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           GDM E+G+ S  FH DL ++++  NI  V+  G  +L L + LP +I   +    + L  
Sbjct: 71  GDMLELGDESIEFHTDLVKIITENNIDKVYTVGKFMLELHELLPDNIRGTHFNDSNQLKS 130

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
            + + + + D ++VK S       ++   + ++
Sbjct: 131 DLANIIQNNDAILVKGSRGMKMDLIVREFVIKY 163


>gi|186682794|ref|YP_001865990.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc punctiforme PCC 73102]
 gi|186465246|gb|ACC81047.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nostoc punctiforme PCC
           73102]
          Length = 500

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 148/481 (30%), Gaps = 47/481 (9%)

Query: 5   WTFHDLLQAIQG----HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               +LL A+       S   +    V G+  +S +    + F  + G   DG +F   A
Sbjct: 1   MKLRELLTAVDSVEQLASHPTLEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFWQSA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +  GA   +V+ +        +   V    ++  A  ++A A        +  +  +   
Sbjct: 61  IASGAVAAIVSPEAAQKNPPTNEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTN 120

Query: 120 T-----------TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-------ARMPVDVD 161
                         K  L  AL     T             P  +         +    +
Sbjct: 121 GKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEAVNAGSE 180

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           FG+ E+  SH      +    +  +AV + +   HL     +E+  +AKA +F      G
Sbjct: 181 FGVMEV-SSHALAQGRVLGC-QFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLKG 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DDS+ + L A   +  + +        +AD  +             +      +
Sbjct: 239 RAIINADDSYGKRLIASLDSERVWSY--SVNDNSADLWMSDLSYEPNGVSGILHTPKGDV 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G +  +N+L  +G    L  D+      +  F    GR +R +   +Q    +
Sbjct: 297 AFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDISVI 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        ++L    P   G+ I V G     G         +   ++    
Sbjct: 357 VDYAHTPDSLE-----NLLKAARPFIPGKVICVFG----CGGDRDRTKRPIMGRIAAELA 407

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
               ++  +            +   + +++                     GD V++  K
Sbjct: 408 DVAVVTSDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|227504688|ref|ZP_03934737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
 gi|227198698|gb|EEI78746.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium striatum ATCC 6940]
          Length = 521

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 145/477 (30%), Gaps = 40/477 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L     G  IG      V+  S+DS++IA    F A+ G    G  F        A 
Sbjct: 5   LQTLATIGGGRVIGDD-SVTVSACSLDSKAIAAGGLFAALPGTRVHGAQFAGDTE---AA 60

Query: 67  LVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
            ++ +   +  +       P+  V+D+   L  +A           T++ +TG+ GKTTT
Sbjct: 61  AILTDEAGLQHLQEAGERRPIIVVEDIRAVLGLIAAEIYEHPTEHLTVLGVTGTSGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLT- 179
             +L   L         IG+    I       ++       + EL   M H G    +  
Sbjct: 121 SYLLEAGLLHAGHKVGLIGTTGTRINREPVPTKLTTPEAPTLQELFARMRHEGVTHVVME 180

Query: 180 -----------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                         +  +   T ++  HL     +E+  +AKA +F+G +      +  D
Sbjct: 181 VSSHALELGRVRGTQFDVGGFTNLSQDHLDFHPTMEDYFAAKAALFDGAQAASAAVICVD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D + + +  +     +  + +  +    + +     +         Q    S     +  
Sbjct: 241 DDWGKRMAQQVAGKPLTLVSTTDEETAENTKQVISARQLGTEPTGAQHVELSFSGETYSF 300

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              M     +    ++   A          +   +         ++++G   +    Y  
Sbjct: 301 ELPMPGKFNIANAALAAGMAAAVGVDTETFLNGVERVAVPGRMESISRGQDFVAVVDYAH 360

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            PA++ A +  L        GR   V+G     G    S    L    +      V ++ 
Sbjct: 361 KPAAIAAVLDTLRGQLSETGGRLGVVVGA----GGDRDSSKRPLMGAAAAERADLVVVTD 416

Query: 409 -----FHVLAL-------KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A+            ++  +    +       +      GD ++V  K 
Sbjct: 417 DNPRSEDPAAIRAAVMAGAQKASQTADIREIGSRAAAIDAVVEWAQPGDAIIVVGKG 473


>gi|119486520|ref|ZP_01620578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
 gi|119456422|gb|EAW37553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lyngbya sp. PCC 8106]
          Length = 508

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 148/486 (30%), Gaps = 53/486 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               +LL  +        P    +  V G++ +S +    + F  + G   DG DF   A
Sbjct: 1   MKLKELLAKV-ADLSEFKPHPAFEKDVKGLATNSHACQTGDLFIGMPGTRVDGGDFWPSA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLS-----IPVFG--VDDVLGALNKLAVAA-RLRSKATIIA 112
           +  GA   +V+          S     +P     V+         A        +  ++ 
Sbjct: 60  IANGAVAALVSQQAAEKTPQTSTESPELPCVIPSVNMTTACAQVAAAFYGYPAQQLKLVG 119

Query: 113 ITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARM 156
           +TG+ GKTTT  ++   L              T             P  +         +
Sbjct: 120 VTGTNGKTTTTHLIEYLLECSDKPTVLFGTLYTRWLGSQITAAYTTPFAVELQQKLAEAV 179

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                +G+ E+    L + R L       +AV T +   HL     +E+   AKA +F  
Sbjct: 180 KAGCQYGVMEVSSHALHQGRVLECP--FDVAVFTNLTQDHLDYHQTMEDYFEAKALLFSP 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
               G   +N DDS+ + L  +  A  + +         AD    +           +  
Sbjct: 238 QYLQGRAIINADDSYGKRLIERLEADRVWSY--SINDSTADLWAAQLSYEPNGVKGVLHT 295

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +G +   N+L  +G    L  D+ T +  L  F    GR +R + +  Q
Sbjct: 296 PQGEAAFELPLVGQYNLSNLLAAIGAGLSLGLDLATMMAKLPEFLGVPGRMERVQISSQQ 355

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               ++D ++  +        ++L    P   GR I V G     G             +
Sbjct: 356 DVSVIVDYAHTPDSLE-----NLLKASRPFIPGRMICVFG----CGGDRDRTKRPKMGKI 406

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++  +            +   +   I                +    GD V
Sbjct: 407 AADLADVVVVTSDNPRTEDPNRILEDILAGIDLEIKPIVMCDRAHAIQRAIAEAKPGDGV 466

Query: 448 VV--KS 451
           ++  K 
Sbjct: 467 LIAGKG 472


>gi|218899068|ref|YP_002447479.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
 gi|218545862|gb|ACK98256.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus G9842]
          Length = 491

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D + +    +  E             +++   D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 459


>gi|118602203|ref|YP_903418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|118567142|gb|ABL01947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 464

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 145/472 (30%), Gaps = 60/472 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL     + +       + G+ ++++S  P + F A++G    G D+I  A+ KG
Sbjct: 1   MNISQLL----ANIVQTKIDIEIKGLCLNAQSTQPGDLFIALQGKLTHGADYINQAIDKG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTK 123
              ++V++  +  +    IP   +D++   L  LA        K  II+ITG+ GKT+  
Sbjct: 57  CVAILVDSKEIECV----IPSIRIDNLSQYLQTLANTFYKNAIKVNIISITGTNGKTSVA 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHI-------------GVPLTLARMPVDVDFGIFELGMS 170
             ++  L+ +      IG+                   +   L     +          S
Sbjct: 113 YFISQLLTKLGIKNGLIGTLGITHSQQLSLNTTPDILTLYQVLDNYYQNNIHHAILEVSS 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           H          +    A+ T +   HL     +++  + K ++F        I    D  
Sbjct: 173 HALTQDR-IAGLNIKQAIFTNLTQDHLDYHHTLDKYQATKEKLFVLDTVESVILNQDDSH 231

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L         +  YS G   +     + +    +                   +G 
Sbjct: 232 YKHFL--NITKDKKRISYSLGDFDSIKTIEQGFLVQLD-----------HYVFEIPFLGE 278

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L  L  V  L    D  I       P  GR +R    L    +    ++     
Sbjct: 279 FNLLNILAALNSVEALGFKRDDIIPLFYQLLPPPGRMQRIEPHLAWIDYAHTPDAIGNAI 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++K            G G            G   +    ++ ++ S      + L+  +
Sbjct: 339 TTLKKHYPNFKIRIVFGCG------------GNRDKDKRAEMGKIASNL-ADTIILTNDN 385

Query: 411 VLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +         +   +  S  +   E          ++L + + +++  K 
Sbjct: 386 PRSENPKTIIENILSGIDDSYKLDIIENRQLAIETAITTLKENECLLIAGKG 437


>gi|317121703|ref|YP_004101706.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591683|gb|ADU50979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter marianensis DSM 12885]
          Length = 503

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 96/485 (19%), Positives = 162/485 (33%), Gaps = 53/485 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL+  +   ++       + GI+ DSR + P   F AI+G  YDGH FI  AV +
Sbjct: 1   MVNLKDLIAVLPEKTVTGPVDRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIQEAVAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGKTT 121
           GA  VV             +P   V     AL  LA A      A ++ +  TG+ GKTT
Sbjct: 61  GAAAVVGERAPAVE----GVPYVQVPSSRTALGLLASAFYGHPSARLVLVGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDV-------------DFGIF 165
           T  ++   L +       IG+ +N IG   +P+                         + 
Sbjct: 117 TTHLVRWVLEAAGHPTGLIGTVHNIIGGRSLPVERTTPEAADLQKLLAAMRDAGLTHVVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   ++ +       + V T +   HL   + +E+ A+AKA +F  L +      
Sbjct: 177 EV-SSHALTLQRVAGCA-FDVGVFTNLTQDHLDFHASMEDYAAAKARLFARLGRNEIPGT 234

Query: 226 NYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   ++ A               + ++G  + AD   R            +  +  
Sbjct: 235 VKPGPKAAVINADDPWGTFMADRSSAPVITYGIRQAADVTARDVVVEPGGVRFVLGTRDG 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + V     G     N L   G    L  D  T  + L       GR            F
Sbjct: 295 EVPVRLRLTGRFNVYNALAAAGAGLALGIDPATVARGLESLPAVPGR---LERIDRGQPF 351

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++ + Y   P  ++  +S + +++  G+GR + V G     G             ++  
Sbjct: 352 TVLVD-YAHTPDGLENVLSTVREMA--GQGRVLCVFG----CGGDRDRGKRPQMGAIAAR 404

Query: 400 NISHVWLS-----GFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVV 448
              +  L+          A+ D +   +                    +      GDVVV
Sbjct: 405 LADYTVLTSDNPRSEDPEAIIDDIEAGVRQVPGAAYERVTERAAAIRRVLELARPGDVVV 464

Query: 449 V--KS 451
           +  K 
Sbjct: 465 IAGKG 469


>gi|184159718|ref|YP_001848057.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|332873767|ref|ZP_08441709.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
 gi|183211312|gb|ACC58710.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ACICU]
 gi|193078569|gb|ABO13596.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
 gi|322509631|gb|ADX05085.1| murE [Acinetobacter baumannii 1656-2]
 gi|323519649|gb|ADX94030.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737990|gb|EGJ68875.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6014059]
          Length = 499

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 151/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   + +       ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179
           +    +     +  +P                    D+         L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++K+  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|154710437|gb|ABS84281.1| TP0933-like protein [Treponema paraluiscuniculi]
          Length = 523

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/487 (13%), Positives = 132/487 (27%), Gaps = 69/487 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DSR++     FFA++G H  G  +I  A+  GA  +V   D       + +   
Sbjct: 26  VSSIAYDSRAVREGSVFFALRGTHAHGAQYIHAAIDAGACAIV--HDCPLDTYVVGVYYA 83

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D   AL+  A A         T+I +TG+ GK++T   +   L    K    I +  
Sbjct: 84  RVPDARCALSSAAAAFYDFPTRALTVIGVTGTEGKSSTVSFIAQLLRLCGKRVGFISTVE 143

Query: 145 NHIG---VPLTLARMP---------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             +G   +P    +                    +F + E     L         V   +
Sbjct: 144 YSLGDDILPNAEHQTTPESLTVQRLLAEMREHSCEFAVIEASSHGLSTRTARLQDVAFDV 203

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV   +   HL      E+    KA +F  L+    I        F +L A+  +     
Sbjct: 204 AVCMNVRHEHLEFHGSFEQYRFDKANVFRALDAHDHIKDGRRVPSFGVLWAEDASAVYFR 263

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQ----------------------------LQG 278
             +              ++ +                                       
Sbjct: 264 EATHKPCFFFKRGTGAEQRTAACLERMPCTLLLVQTLPQISQALRLRFVLSTVQEPAQPA 323

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +                  +    + +      +           +    R +       
Sbjct: 324 QDGAHDVSVPLEGAFNACNIAASFLVLHGLLGTSLAAFAQHVQYVQPIQGRMQRVDMGQD 383

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           F ++ + Y   P+S +  +  L+      + R + + G   E      +    +   ++ 
Sbjct: 384 FEVLID-YAHTPSSFEEILPPLAARVRARKRRMLVLFGSAGE----RDTQKRAMQGAIAS 438

Query: 399 YNISHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + L+                 A  +       +            I S     D+
Sbjct: 439 RYAHVIVLTDEDPRGEDPMGILCMIAAGCEHKKLGKTLFLIPDRVAALRHIFSLARAQDL 498

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 499 VLLLGKG 505


>gi|149181016|ref|ZP_01859517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148851300|gb|EDL65449.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 506

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 166/484 (34%), Gaps = 55/484 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN  +T  +    +    +    +  ++ ++ DSR +    AF  I G  +DGH F+  A
Sbjct: 1   MNIDFTQQE---QLGIKRLWGQTKRVISNVNYDSRRVQKDAAFVCISGEKHDGHSFLEDA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLR--SKATIIAITG 115
           ++ GA ++   +  V        P      V+D    L +L++    R     T I +TG
Sbjct: 58  IRNGAAVLAGESAEVLEKAGRKYPDRTFILVEDARAFLAQLSILFYKRAHENLTTIGVTG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-------------------VPLTLARM 156
           + GKTT    +   L+ +      IG+                           +     
Sbjct: 118 TNGKTTVTAYVKSLLTLLGTPTGSIGTTGIISSTGTINLKKSTPTTPEASDLHYIFDQFK 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               +  + E+  S +  ++     +   IA+ T ++P HL      E    AK ++F+ 
Sbjct: 178 ERGDEAAVMEV--SSVSTVQKRVEGIEFDIAIHTNLSPEHLEFHKTFENYKEAKLKLFK- 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +    +    D    + +       G    YS  K  +AD +    +    +++ E++ 
Sbjct: 235 -QAKKAVVNIDDSGMAKDILKIH--SGDVLTYSLDKRSDADVKASNLRTIGHETFFELKF 291

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           Q +S  V    IG +   N+L  +         +   + AL+     EGR +      N+
Sbjct: 292 QKESYIVRAPVIGDYNVANILAAVCTALHSGYSIHQILLALTSIEGPEGRFELLTEYGNR 351

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                             AA+  L +     E  R+ VL     + + S+     L    
Sbjct: 352 KIMLDYA--------HTPAALDNLLREVKKLEYNRLIVLITGIGLRDKSKM---PLMAET 400

Query: 397 SLYNISHVWLSGFHV------LALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGD 445
                  + +S  H         + + L     P + +++   T     L   +   + D
Sbjct: 401 VEGRADEIVVSVDHPDFNDPDEIISNVLAGFSNPSADNIYTERTRAEAVLSALALSNEND 460

Query: 446 VVVV 449
           +V++
Sbjct: 461 LVLL 464


>gi|203284121|ref|YP_002221861.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
 gi|201083564|gb|ACH93155.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia duttonii Ly]
          Length = 508

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 151/464 (32%), Gaps = 50/464 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I    +  + G++ DSR ++    FFA+ G H++G  FI  A+Q+G+ ++V   D+    
Sbjct: 23  IIGSCEVEILGLAYDSRCVSFNFVFFALPGLHFNGQKFIESAIQRGSNVIVHTNDI--DF 80

Query: 79  GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
              ++    VD  ++   ++  A         K  II +TG+ GK++    +   L S+ 
Sbjct: 81  YDSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEI 175
                I +     G    +                        +V++ I E     L + 
Sbjct: 141 AKVGFISTVFLEDGSGTLVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLDDR 200

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +   +AV+T I+  HL     ++    AK  +F      G        +  +  
Sbjct: 201 TSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANFHG---GFGIINMDDNH 257

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +       +T     K++ ADF + K  +    +  E            +  G    +N
Sbjct: 258 FSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKIKYAARVNLTGSFNVEN 317

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ++  L +VS +     + +    +    E    R +       F+LI +  +   A    
Sbjct: 318 VMAALIVVSQIMNVDISKLICKLIN--IESLYGRMQDINFGQDFSLIVDYAHTPGA---- 371

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----- 410
            + +        + R I+V G   E           L   ++      + L         
Sbjct: 372 FLKMFPIFKRLAKKRLISVFGSAGE----RDILKRRLQGEIADEYSDVIILCDEDPRGED 427

Query: 411 -VLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  ++D          +  + +            +     D+V
Sbjct: 428 SMQIIRDIAEGIVTKTLNKDLFFIPDRKCAIEKAINIACSDDLV 471


>gi|68535820|ref|YP_250525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
 gi|68263419|emb|CAI36907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium jeikeium K411]
          Length = 536

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 79/531 (14%), Positives = 139/531 (26%), Gaps = 75/531 (14%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +   L +   G   G      V   +I S+ +     F A+ G    G  F   A   
Sbjct: 1   MTSLKQLAEICGGTLTGPWEGVEVTSAAIGSQDVEQGGLFCAVPGQKVHGATF---AADS 57

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            A  V+ +      I      +P   VD+V   +  +A         +   I ITG+ GK
Sbjct: 58  KAAAVLTDAAGQRIIDDATTPLPCIVVDNVRKWMGPVAAEVYGHPARQLKTIGITGTSGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFG-------IFE----- 166
           TTT  ++  AL         IG+      G P+  +    +           + E     
Sbjct: 118 TTTSYLVEKALLESGLRVGLIGTTGTRINGQPIPTSLTTPEAPTLQALLARMVAEGVTHL 177

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S         H V   +   T ++  HL     +E+   AKA +FE  E  G    
Sbjct: 178 VMEVSSHALQLGRVHGVHFDVVAFTNLSQDHLDFHPTMEDYFQAKALLFERAEDGGVP-G 236

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  +    +  A+  K   +            +                    +  
Sbjct: 237 TAVVCCEDEWGERMRAIAAKYSSTVALYPQGGNHEAETGSPVWSIASAEVAPNGRQHIRL 296

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKAL--------------SVFHPKEGRGKRYR 331
              G    + +  ++G+             A               +V    + +     
Sbjct: 297 SIAGGSEPRELDYSIGMAGSFNQANSLVALACIEAVTGEPLSSDSTAVQALADVQVPGRM 356

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             + +G   L    Y   P +++A +  L    P    R   VLG     G         
Sbjct: 357 QLVEEGQDFLAMVDYAHKPGAVQAVLGSLHDYLPDPAARIGIVLGA----GGNRDHDKRA 412

Query: 392 LAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH-------------VHYSET 429
           +   ++      V+++  +           A+       +                    
Sbjct: 413 IMGRIAAELADAVFVTDDNPRDEEPSVIREAIYAGAREGVQKKEQEQSTNAETVCEIVPD 472

Query: 430 MDGLFLFIQSSLVDGDVVVV------KSSNSCG-------FYRLINLLLEE 467
                    +    GD VVV      K     G          L   L   
Sbjct: 473 RAEAIAAAVTWARPGDAVVVAGKGHEKGQLVAGKMHPFDDVEELATALKNR 523


>gi|33519611|ref|NP_878443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
 gi|46576955|sp|Q7VQJ2|MURE_BLOFL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33517274|emb|CAD83658.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Candidatus Blochmannia floridanus]
          Length = 499

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 84/489 (17%), Positives = 170/489 (34%), Gaps = 53/489 (10%)

Query: 1   MNPLWTFHD-LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L   H+ ++  I G ++ I    ++ G+ +DSR+I     F AI+G + DG   I  
Sbjct: 1   MFKLKQLHELIVPWISGINVKIP---YLTGLELDSRNINFGNLFIAIQGYNTDGRLHIDD 57

Query: 60  AVQKGAGLVVVNT-------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATI 110
           A+  GA  ++  +                 IP+   + +   ++ +A            +
Sbjct: 58  AINNGAVAILSESYNKSTFFIKKIVNNVEVIPIIYFNQLNKCISNIAGRFYDHPSLCLKL 117

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----- 165
           I +TG+ GKTT   +LT   S + +  A +G+  N  GV   +          I      
Sbjct: 118 IGVTGTNGKTTITHLLTNWTSLLGERSAVMGTLGN--GVLSDINPSCCTTCSAIETQKIL 175

Query: 166 -----------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                       + +S  G  ++    +   +A+ + I+  HL   + I +   AK  +F
Sbjct: 176 KQFVQSGVTFVAMEISSHGLDQYRVDSLYFDVAIFSNISNDHLDYHNNINQYRMAKWRLF 235

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL-RKWKQCSEQSWME 273
             L     +    D   +  L + S+A+ +    +  +S +  +    K       + + 
Sbjct: 236 NELRVKNYVINVDDCVGYRWLLSLSNAVAVTIKNNLPRSWSGRWIALVKADYYLYGTKIV 295

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +    +  +    +G     N+L+ LG + I+   + + +   S  +P  GR +   C 
Sbjct: 296 FKSSWGNGFIHSQLLGEVNVSNILLALGALLIMGYSLKSLLYTGSKLYPVCGRLEVLSCL 355

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +         + +A    +  A  +        +GR   + G     G         L 
Sbjct: 356 NHPTVIVDYAHTPDALKKILIFAKHLC------NKGRLWCIFG----CGGNRDRSKRSLM 405

Query: 394 EVLSLYNISHVWLSG-----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            V++     +V ++           + D     +  S  +   E        + S     
Sbjct: 406 GVIANRYSDYVIITNDNPRVEDPKLIIDDIICKIRNSEKLKIIEDRVYAINMVVSKACSD 465

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 466 DFVLILGKG 474


>gi|224826073|ref|ZP_03699176.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
 gi|224601710|gb|EEG07890.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lutiella nitroferrum
           2002]
          Length = 497

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 38/450 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-TDMVASIGSLSIPVF 86
             +  DSR + P + F A +G + DG  FI  A+  GA  V+ +  D      + ++P  
Sbjct: 24  KRVETDSRRVLPGDVFLACRGEYADGRQFIPMALANGAACVLWDPADGFNWNPAWNVPNL 83

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK--------- 135
            V  +      +A  A        T+I ITG+ GKT+    L  A S +           
Sbjct: 84  AVPQLRARAGIVASHAYGEPSRAMTVIGITGTNGKTSISHWLAQAFSLLAHKAALIGTVG 143

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         P  +       ++      +  + +S  G  +F  + V    AV T
Sbjct: 144 NGFYGALTETTHTTPDPVTVQQKLAEYKRQGADVVTMEVSSHGLDQFRVNGVSFATAVFT 203

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +EE  ++KA +    E      +N DD+F   L A       +T+   
Sbjct: 204 NLTRDHLDYHGSMEEYGASKARL-FHWEGLRHAIINADDAFGRELAAGIDRQRTQTVTYG 262

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +    D + +      +   M V      +E+    +G   A N+L  L  +     + 
Sbjct: 263 LE--QGDVRAQNLSATLDGLQMTVTTPWGEVELRSPLLGRFNAANLLACLATL---CVNG 317

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A +V    +    R +         ++ + Y   P +++ A++ L++I P G   
Sbjct: 318 VALKDAAAVLSRIQPARGRMQRLGGGHEPLVVID-YAHTPDALEKALATLAEIRPAGNRL 376

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA-LPRSIH 423
              V G     G         +   ++        ++  +  +      + D        
Sbjct: 377 YC-VFG----CGGDRDKGKRPMMGAIATRIADVAVVTSDNPRSEEPQAIIADIRAGMGET 431

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            H          +  ++   GD+V+V  K 
Sbjct: 432 GHVEADRAAAIRWAIAAARAGDIVLVAGKG 461


>gi|296166028|ref|ZP_06848478.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898618|gb|EFG78174.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 516

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 83/511 (16%), Positives = 149/511 (29%), Gaps = 63/511 (12%)

Query: 10  LLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L   +          VP   V G+++ ++ + P + F A+ G    G  +   A+++GA 
Sbjct: 18  LAAQVGAVLADRAAAVPDVAVTGVTLRAQDVRPGDLFAALPGSSTHGARYAAEAIERGAV 77

Query: 67  LVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
            V+ +   VA +G  + ++P        G L  LA           T+I ITG+ GKTTT
Sbjct: 78  AVLTDAAGVAEMGASASAVPTLVHPAPRGVLGALAATVYGNPSERTTVIGITGTSGKTTT 137

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   L +  +T   IG+    I                   L  A     VD  + E
Sbjct: 138 TYLVEAGLRAAGRTAGLIGTVGIRIDGADVPSALTTPEAPALQALFAAMAERGVDTVVME 197

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224
           +  SH   +  +       +   T ++  HL     + +   A AK        +   + 
Sbjct: 198 V-SSHALALGRVDGTG-FAVGAFTNLSRDHLDFHPTMADYFEAKAKLFDPASPLRARRVV 255

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD     +  ++   G   I      + A ++                +    +   
Sbjct: 256 VCVDDEAGRAMAMRAMQGGAAAITVSAADQPAHWRAMDVIPLGTGGQQFTAIDPAGVRHR 315

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                          L  ++IL A   +  +A          G+       Q F  L+D 
Sbjct: 316 VGIRLPGHYNVA-NCLVALAILDAVGVSPEQAAPGLLDTRVPGRMEEIDCGQDFLALVDY 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++                       R   V G     GE        +    +      V
Sbjct: 375 AHKPGALRAVLTSLAR------PGRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLV 424

Query: 405 WLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            ++     G    A++  +         +  V              +    GDVV+V   
Sbjct: 425 VVTDDNPRGEDPAAIRREILAGAAAGGGAAEVVEIGDRRAAIEHAVAWARPGDVVLVAGK 484

Query: 450 ---KSSNSCG----FY---RLINLLLEEFPA 470
                  + G    F     L + L      
Sbjct: 485 GHETGQRAAGEVRPFDDRLELADALKARRGP 515


>gi|220904379|ref|YP_002479691.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868678|gb|ACL49013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 484

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 80/453 (17%), Positives = 135/453 (29%), Gaps = 45/453 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV--NTDMVASIGSLSIPVFG 87
           +  DSR + P + F A+ G   DG  FI  A + GAG++V   +++  A+  +    V  
Sbjct: 19  VRADSRQVCPGDIFVAVPGVREDGAQFIPAAAEAGAGVIVCRADSEEAAAAATAGCRVVH 78

Query: 88  VDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL +L  A          I+ +TG+ GKTT   +L    +        +G+ + 
Sbjct: 79  HADPREALWRLAQARWHTDTLPIRIVGVTGTNGKTTCTYLLERLFAQAGHKLGVMGTVSY 138

Query: 146 HIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                                +  A     VD  + E+  S     +     V    A  
Sbjct: 139 RWPGHVEAAPLTTPDALSVHAMLAAMARDGVDVAVMEV--SSHAIDQQRVCGVPFSGAAF 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +E    AKA +F  L +         D  +     +     +     
Sbjct: 197 TNLSQDHLDYHRDMESYFQAKARLFLELPRADKSMAVNADDAWGRRLLELCPTALSFGLQ 256

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G               +    + + L+    E+    +G   A N+L    +   +  D
Sbjct: 257 KGAPNRRHLWGELLSSTTAGCHLRMSLEDMQWELRSPLVGAFNASNLLAVQAVALEMGID 316

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +    AL  F    GR +R         F     + +A         +VL  +   G  
Sbjct: 317 PEAFK-ALESFTGVSGRLERVENPQGLNVFVDYAHTPDA-------LENVLKALRDAGFE 368

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD----ALPR 420
           R I V G     G         +             L+          A+       L  
Sbjct: 369 RVITVFG----CGGNRDRSKRPIMGEAVARWSDVAVLTSDNPRFEDPEAILKDVLPGLAD 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  V                L   D +++  K 
Sbjct: 425 AKEVVVEVDRREATTRALGMLGKKDALLIAGKG 457


>gi|12007716|gb|AAG45235.1| MurE [Pseudomonas aeruginosa]
          Length = 487

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 144/455 (31%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPDLRCRVINLDDDFGRRLAGEEQDSELITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                S     +              +  +   +       G     N+L  +G +  L 
Sbjct: 254 SLTDSSAFLYCREASPTASPTARRSSIAAKQGLLRSPLL--GRFNLSNLLAAVGALLGLG 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR +R               + +A          VL  + PH 
Sbjct: 312 YPLGDILRTLPQLQGPVGRMQRLGGGGKPLVVVDYAHTPDA-------LEKVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|296127816|ref|YP_003635068.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
 gi|296019632|gb|ADG72869.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachyspira murdochii
           DSM 12563]
          Length = 508

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 162/471 (34%), Gaps = 47/471 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV----VNT 72
                     + GI+ +S+ I  +  F AIKG   DGH +I  A+   A +++     + 
Sbjct: 18  QLTKECLNIEIRGIAYNSKLIKNKYIFVAIKGLKDDGHKYIESAINNKAAIIIYDNSADK 77

Query: 73  DMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128
           + +  +      +    V +    L  ++          I  IAITG+ GKTTT  +L  
Sbjct: 78  NFIKELEDKHTYVYFIAVKNPRECLAYISAKFFDEPTKKINTIAITGTNGKTTTTYLLKS 137

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARM---------PVDVDFGIFE-----LGMSHLGE 174
            L + K   A IG+  N IG       +          +       E     +  S    
Sbjct: 138 VLEANKNKTALIGTIKNMIGKTEIKTNLTTPESIDLENIFDKALKKEVSHIVMEASSQAL 197

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSF 231
                  +    A+ T I   HL     ++    AK ++F   +   K   + +   D+ 
Sbjct: 198 AMDRCDYLNYDTAIFTNITEDHLDYHGDMQNYLKAKLKLFSLLKESSKNKKLAIVNIDTD 257

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                +         + ++G ++ AD+  +     S+ +  E   +GK +  V   +   
Sbjct: 258 NFKQISNYIKKLGIKMVTYGLNEKADYYGKIISLNSKNTEYEFYSKGKFISKVKLSM--L 315

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L +L +++ ++       K++      +  G+       +  F    + Y+  P 
Sbjct: 316 GRFNILNSLSVLAYVSEYKLDIEKSIKAMRKVQVAGRFEIVTKEKHPFIAAVD-YSHTPD 374

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           S++  +    +++P      I V G     G         +   ++        L+  + 
Sbjct: 375 SLENILKEARKLNPKR---VIVVFG----CGGDRDRKKRPIMASIAEKYSDISILTADNQ 427

Query: 411 --------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +  ++       +    +  + +F  I+    + D+V++  K 
Sbjct: 428 RTEDINQIMNDIEKGFKNKDYKKIIDRKEAIFEAIKE-AKENDIVIIAGKG 477


>gi|134095976|ref|YP_001101051.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Herminiimonas arsenicoxydans]
 gi|133739879|emb|CAL62930.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Herminiimonas
           arsenicoxydans]
          Length = 508

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 73/454 (16%), Positives = 137/454 (30%), Gaps = 41/454 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSRSI   + F A  G   DG  +I  A+++GA  ++ +          ++P   +D++ 
Sbjct: 28  DSRSIGKGDVFLAYPGDEADGRTYISDAIERGAQAILYDAAGCNWDEEWNVPHLAIDNLR 87

Query: 93  GALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACI------GSYN 144
                +A A       T+  +A+TG+ GKT+  + L  ALS + +  A I         +
Sbjct: 88  ACAGFIAAAYYGHPDHTMFTVAVTGTNGKTSCSQWLGNALSRLGQPTAVIGTLGVGIFKH 147

Query: 145 NHIGVPLTLARMPVDVDFGIFEL-------------GMSHLGEIRFLTHLVRPHIAVITT 191
              G          D      EL               S +G  +   + V   +A+ T 
Sbjct: 148 GEHGTFNVTGYTTPDAVLLQRELVNMHHAGATALAIEASSIGLHQGRLYGVHFDMALFTN 207

Query: 192 IAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
               HL     +     A      + GL        +           +  +    T Y+
Sbjct: 208 FTRDHLDYHGDMAAYEAAKTMLFDWPGLRHAVVNLDDALGVRLVERLKRRQSGIGITGYT 267

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                 AD  L                      V           N+   LGI+ IL A 
Sbjct: 268 LTNQGVADIDLLSASDIRSTHAGTSFQLTSKFGVTLVKTQLVGEFNVSNVLGIIGILLAK 327

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  ++          R +         ++ + Y   P +++  ++ L +++    G
Sbjct: 328 GIALSNVVAAIEALTSVPGRMQQLGGAEAPLVVID-YAHTPDALEKTLATLREVANERGG 386

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPR 420
               V G     G    +         +     H+ ++  +            +   +  
Sbjct: 387 ALWCVFG----CGGDRDAGKRPQMGKAA-MAADHIIVTSDNPRHEEPASIIAQIVAGMDV 441

Query: 421 SIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +  H  E      L+        DV+++  K 
Sbjct: 442 AKNAPHIMEDRAKAILYAGRHAAKQDVILLAGKG 475


>gi|298346703|ref|YP_003719390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315656831|ref|ZP_07909718.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|298236764|gb|ADI67896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii ATCC 43063]
 gi|315492786|gb|EFU82390.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Mobiluncus curtisii subsp. holmesii ATCC 35242]
          Length = 516

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 77/479 (16%), Positives = 136/479 (28%), Gaps = 43/479 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL QA+ G   G    G V G  ID+R++   E F A+ G H  G  F   A  +GAG
Sbjct: 22  VTDLAQAVGGTVHGDG--GRVRGAVIDNRAVRGGELFVAMPGFHVHGAKFAADAASRGAG 79

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +   +A +  L IP   V DV     + A  A  R   + +   +TG+ GKTTT  
Sbjct: 80  AVLSDPAGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTY 139

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170
           +L   L  +    + +G+    +G             P   A     V   +  +   +S
Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +       T ++  HL     +E+    KA +F        + +     
Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + + L  +    G     +   +        K  +                E        
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +   L I         +           +           R  L      +I + 
Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  NP S K  +     +    +GR + V+G   +           +   ++       +
Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDPGKRPILGQIAAELADFTY 430

Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++          G     +                +             D VV+     
Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488


>gi|254411409|ref|ZP_05025186.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181910|gb|EDX76897.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Microcoleus
           chthonoplastes PCC 7420]
          Length = 501

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 158/482 (32%), Gaps = 45/482 (9%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
              HDLL+AI               + GI  +S +  P   F  + G   DG DF   A+
Sbjct: 1   MKLHDLLRAIPNVVEMPNHPALDAQITGICTNSHACQPGNLFIGMPGTRVDGGDFWQSAI 60

Query: 62  QKGAGLVVVN-----TDMVASIGSLSIPVFGV--DDVLGALNKLAVAA-RLRSKATIIAI 113
             GA   +++                 P      D  +      A        +  ++ +
Sbjct: 61  ASGAVAALISPQAAQKHPPQPKPDAEPPCIICATDMTVACAQAAAAFYNYPTRQLQLVGV 120

Query: 114 TGSVGKTTTKEMLTIALSSIK-----------KTYACIGSYNNHIGVPLTLARMPVDVDF 162
           TG+ GKTTT  ++   L+  +           +      +  +    P+ L +       
Sbjct: 121 TGTNGKTTTTHLIEFILTQAQRPTALFGTLYARWQGFSQTAVHTTPFPVELQQQLHSAVA 180

Query: 163 GIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              E   + +S     +         +AV T +   HL     +E+  +AKA +F     
Sbjct: 181 AGCELGVMEVSSHALAQGRVLGCEFDVAVFTNLTQDHLDFHRDMEDYFAAKALLFNSDYL 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD + + L  K      +T     ++ +AD                +     
Sbjct: 241 HGKAIINADDPYGKRLIEKV--GRDRTWSYSVQNPSADLYTSNLTYTLIGVKGTLHTPVG 298

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +      +G +   N+L  +G V  L  D+ T +  L+ F    GR +R +   +Q   
Sbjct: 299 DVTFNSPLVGQYNLSNVLAAVGAVLNLGLDLKTVVTTLNQFPGVPGRMERVQLKPDQDIS 358

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++  +        ++L    P  +GR I V G     G+  ++    + ++ +  
Sbjct: 359 VIVDYAHTPDSLE-----NLLKAARPFIQGRMICVFG---CGGDRDRTKRPKMGKIGAEL 410

Query: 400 NISHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               V  S           +  + + +P ++                     GD V++  
Sbjct: 411 ADVAVVTSDNPRTEDPERIIQDILEGIPATVEPIVMSDRATAIRTAILDAKPGDGVLIAG 470

Query: 450 KS 451
           K 
Sbjct: 471 KG 472


>gi|169632242|ref|YP_001705978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii SDF]
 gi|169151034|emb|CAO99680.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii]
          Length = 499

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 151/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   + +       ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179
           +    +     +  +P                    D+         L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++K+  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|134298538|ref|YP_001112034.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfotomaculum
           reducens MI-1]
 gi|134051238|gb|ABO49209.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desulfotomaculum reducens MI-1]
          Length = 486

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 100/476 (21%), Positives = 163/476 (34%), Gaps = 52/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LLQAI   +I   P+  + GI  DSR  A    F A+KG   DGH +I +AV  G  
Sbjct: 3   LKELLQAIPVITIIGNPEIDIEGICYDSRQAAKGMIFVAVKGYQTDGHKYIENAVAAGVT 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            VV  T++V       +    V D   AL  +A          +  + +TG+ GKTTT  
Sbjct: 63  AVVYETEIV---LPTGVTGVQVSDSRKALALMADQFYGHPSKKLSMVGVTGTNGKTTTTH 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARMPVDVDFGIFELGM 169
           ++       +     IG+ +N IG               +   LA+M  +   G+  + +
Sbjct: 120 LIAAIWRKARVKPGVIGTIHNLIGEKALAVSNTTPESLDLQKILAQMLDEGVKGVA-MEV 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           V   +AV T I   HL   + +EE  +AKA++F          +N DD
Sbjct: 179 SSHALALNRVAGVNYDVAVFTNITQDHLDFHNTMEEYLAAKAKLFT--TDIQYAIINADD 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              E LK          +Y++G  + AD + +  +  +            + ++     G
Sbjct: 237 PAAEELKKI----SRGKVYTYGIDQAADIRAKDIQVTARGVSFMASGPWGNHQLNLKLTG 292

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L        L    DT + AL       GR +      N         + +  
Sbjct: 293 RFNVYNALAAYTTGMALGFGSDTVVSALEDVPGVAGRFELLDKGQNFAVVVDYAHTPDG- 351

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   ++L+      +GR I V G     G         +   ++        ++  
Sbjct: 352 ------LENILTTARQITKGRLITVFG----CGGDRDRTKRPIMGEIAARYSDVPVVTSD 401

Query: 410 HV------LALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
           +         ++D +     V   E                    +GDVVV+  K 
Sbjct: 402 NPRTEEPQKIIQDVVEGVNRVIAPEDYLVLVDRREAINKAIELAQEGDVVVIAGKG 457


>gi|295098589|emb|CBK87679.1| UDP-N-acetylmuramyl-tripeptide synthetases [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 471

 Score =  114 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/453 (14%), Positives = 134/453 (29%), Gaps = 43/453 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
            +DSR  A  + F A+ G   DG  +I  A+ +G   ++      A+ G +     +PV 
Sbjct: 2   VLDSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVI 61

Query: 87  GVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++ +TG+ GKTTT +++      + +         
Sbjct: 62  YLSQLNERLSALAGRFYNEPSDQLKLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G                               + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVSPTENTTGSAVDVQRVLAGLAEQGATFAAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +E   +AK  ++        I    D+     L+    A+ +      
Sbjct: 182 NLSRDHLDYHGDMEHYEAAKWLLYSTHHHGQAIINADDEVGRRWLEKLPDAVAVSMEDRI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +    + +  +       + +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCRGRWLKAVEVNYHDSGATIRFASTWGEGEIESRLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   +K      P  GR + +              + +A           L     H  G
Sbjct: 302 MADLLKTSERLQPVCGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCAG 354

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPR 420
           +   V G     G         L   ++        ++  +            +   +  
Sbjct: 355 KLWCVFG----CGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRVIINDILAGMLD 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +      E              + DVV++  K 
Sbjct: 411 AGRARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443


>gi|149198202|ref|ZP_01875249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
 gi|149138804|gb|EDM27210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lentisphaera araneosa HTCC2155]
          Length = 472

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 84/478 (17%), Positives = 170/478 (35%), Gaps = 63/478 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M     F ++L+ +     G++P+  + G S DSR I    AF  +KG   DG  +I  A
Sbjct: 1   MKSSNDFLEMLEELNPRLSGVLPEL-IYGFSSDSRKIKEGFAFSVLKGTQQDGKAYITEA 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118
           + KGA L++           ++IP   +DD+  A   LA            IIA+TG+ G
Sbjct: 60  LAKGARLLLCEE-----FLDVAIPQICIDDIRKANALLADLFHAHVSENLKIIAVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDF 162
           K++T  ++   L+ + K+ A IG+    +G  +  + +                    ++
Sbjct: 115 KSSTAYIIQYLLNHLGKSTAIIGTLGRGLGGEMKASALTTPGAEELHSFFAEVAKGGAEY 174

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S  G  +   + +     + T ++  HL     +E   SAK  +F+  +    
Sbjct: 175 VVLE--ASSHGLDQQRLYGLGFEAVLFTNLSEDHLQYHGSMENYFSAKKSLFDDYDSKIK 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I  N DD++ + L+     +       F +  ++D Q+ +     E +   +        
Sbjct: 233 IV-NSDDAYGKRLRDSQTKV-------FSQDPDSDCQVLQNSVKLEGTECLLP------- 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G +   N    + +V  +          L++       G+      N G   ++
Sbjct: 278 ---QLLGEYNIYNAAGAMLLVKEILGPSYVGKIKLAMEKFSGIPGRMELFKKNNGAQVIV 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++            V+ ++  +   +   V G     G+   +    + E  +     
Sbjct: 335 DFAHAQEALE-----KVICELRKNCREKLSIVFG---CGGDRDPARRYGMGE--ASDLAD 384

Query: 403 HVWLSGFHVLA------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V L+  +  +      + D L  +          +         L   D +++  K 
Sbjct: 385 EVILTNDNPRSEDPQQIINDILSSKKKEARVIFDREQAIRLAWEELEPNDCLLIAGKG 442


>gi|152976276|ref|YP_001375793.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025028|gb|ABS22798.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cytotoxicus NVH
           391-98]
          Length = 491

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAEQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V D   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKDTFRSLAVLADYFYEQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       + E      + 
Sbjct: 116 SHIIDEIMRAHGHKTGLIGTINMKIGDETFAVKNTTPDALTLQQAFHRMVEENVNSAVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S     R   H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDRGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +            T+ ++G   ++D   +     S  +   +    +S ++   
Sbjct: 236 AVLNNDDAATEAYIRSTAATVVTYGIDTHSDVMAKDIVMTSGGTTFTLVTPHESKKITMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N L       +    + T I  L       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNALAATAAGLVSGVSLQTIIDVLEHLTGVAGR---FEVVDGGQDYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  ++   Q +   +G    ++G     G         +   ++    +H  L
Sbjct: 352 AHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHAIL 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +   +  +  E             S     DV+++  K 
Sbjct: 405 TSDNPRSEDPQAILDDMLTGVKGNNYEVIVDRKKAIFHAISEAQAEDVIIIAGKG 459


>gi|228998696|ref|ZP_04158283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
 gi|228761164|gb|EEM10123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock3-17]
          Length = 491

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 156/477 (32%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T  RM   +V+  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH   +  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALSLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G   ++D   +     S  +   +    +S+ + 
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L  +    +    + T I  ++      GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGR---FEVVDGGQDYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  ++   Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHA 402

Query: 405 WLS-----GFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+          A+ D   A  +  +            +  S     D++++  K 
Sbjct: 403 ILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFYGVSEAKAEDIIIIAGKG 459


>gi|313905225|ref|ZP_07838593.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
 gi|313469978|gb|EFR65312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium
           cellulosolvens 6]
          Length = 496

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 79/473 (16%), Positives = 148/473 (31%), Gaps = 42/473 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
               LLQ ++   +       +  +  DSR  A    F  I G   DGH F      KGA
Sbjct: 4   NLKTLLQGLEYEILQGDENREIESVIYDSRKAAEGCLFVCIPGAVVDGHSFAPEVASKGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             ++V T +        + V  V++   AL  ++         K   I ITG+ GKTTT 
Sbjct: 64  AALIVETAVDV---PAGVTVVKVENSRRALALISAEWFDHPAKKLKTIGITGTKGKTTTS 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGM 169
            M+   L++       IG+     G  +  +     + + + E              + +
Sbjct: 121 YMVQSILNAAGHKCGLIGTIETITGKRVIPSPNTTPISYLVNEYFAEMVEAGLDSVVMEV 180

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           +     + T +   H+   +  E+     A   +  ++     +N DD
Sbjct: 181 SSQALKYDRVTGIHFDFGIFTNLGQDHIGP-NEHEDFEDYLASKKKLFDQCTIGIVNRDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             F+ +   +    ++T     ++           +              ++ V     G
Sbjct: 240 KLFDRIVEGAACSKLETYGFAEEASLRATDAMMLCKPGYLGIRYQTEGLVNIPVEVDIPG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L  + +        +  +KA     P+     R         FTL+ +  +  
Sbjct: 300 KFTVYNSLAAIAVCHHFGVTEEEIMKA----LPQARVKGRVEMVKVSDKFTLMIDYAHNA 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                A  S+LS +  +   R + + G     G   +     + EV        +  S  
Sbjct: 356 ----MALESLLSTLREYHPARLVCLFG---CGGNRDRERRFSMGEVSGKMADFTIITSDN 408

Query: 409 ---FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ D +   I     HY+          +   +   GD++V+  K 
Sbjct: 409 PRFEEPQAIIDDIVTGIKKTDGHYTTIVDRKEAIAWAIHNGEPGDIIVLAGKG 461


>gi|291615179|ref|YP_003525336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585291|gb|ADE12949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sideroxydans
           lithotrophicus ES-1]
          Length = 499

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 69/457 (15%), Positives = 138/457 (30%), Gaps = 35/457 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V  +  DSRS+   + F A  G   DG  FI  A+++GA  V+          + S+P
Sbjct: 14  VNVRHLVSDSRSVNRDDTFVAYPGSQADGRHFIAQAIERGANSVIWEEHGFKWNPTWSVP 73

Query: 85  VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+      +A     +    +  + ITG+ GKT+    L  +  ++ +  A IG+
Sbjct: 74  NLAVSDLRHQAGLIADLVYGQPSQKLWMVGITGTNGKTSISHWLAKSFGALGRKSALIGT 133

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV--------------RPHIAV 188
             N     L            +  L   +  +      +                  +A+
Sbjct: 134 LGNGFPEALRATANTTPDALIVHGLLAEYEQQGARAAVMEVSSHALTQGRVNGVHFDVAL 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T +   HL     ++  A+AK  +F+       +    D    EL +    A      Y
Sbjct: 194 LTNLTRDHLDFHGDMQSYAAAKKRLFDWASLKYAVLNLDDMFGAELAEQLQDASVEVIGY 253

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH-----GIGYHMAQNMLMTLGIV 303
                     +    +                                 + N    LG +
Sbjct: 254 GLNDDSLKMAERLGIRMVYGSLTQMDAQGLTLQLHTSWGAAALCSRLIGSFNASNLLGAL 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           ++L A       A      ++    R +    +G  T++ + Y   P ++   ++ + ++
Sbjct: 314 AVLLASEVRIDDAARELGLQKAVAGRMQTLGGKGLPTVVVD-YAHTPDALDKVLTTVREV 372

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSG----FHVLALKDAL 418
           +    G+ I V G     G         +   ++       +  S          +   +
Sbjct: 373 TESAGGKVICVFG----CGGDRDRGKRPMMGTVASKLADVRIITSDNPRSEEAAEIVSEI 428

Query: 419 PRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   Y   E          ++    D V++  K 
Sbjct: 429 AAGMQGEYQVIEDRAKAITLAIANARHIDTVLLAGKG 465


>gi|152965748|ref|YP_001361532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151360265|gb|ABS03268.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 548

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 90/480 (18%), Positives = 150/480 (31%), Gaps = 53/480 (11%)

Query: 7   FHDLLQAIQ-----GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             +L   +      G +        V G+++DSR + P + + A+ G  + G  F   A 
Sbjct: 34  LSELRGVLGLPPGAGPADPSGADPAVRGVTLDSRHVLPGDLYAALPGARHHGAQFAGQAR 93

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             GA   + +  +        +P   V D    L  LA            +  +TG+ GK
Sbjct: 94  ASGAAAALSDRPLP------GLPTLVVPDPRAVLGPLAAHLHDHPSHHLEVYGVTGTNGK 147

Query: 120 TTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDVDFGIFELGM--- 169
           T+T  +L   L S       I         ++         A    +    + E G    
Sbjct: 148 TSTTHLLDAGLRSAGHRTGMISGIRVRTPEWSRPAQRTTPEAPELQETLAALREQGATSA 207

Query: 170 ----SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S  G         R   AV T +   HL      E   +AKA +     +     +
Sbjct: 208 AVEVSSHGLALHRVDGTRFRAAVFTNLGRDHLDLHGDQESYFAAKASL-FAPHRCALAVV 266

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD+    L A+       T +S    + AD++  + +  ++++   +   G    V  
Sbjct: 267 NVDDAHGRRLAAQVRVP--VTTFSAAGRREADWRATEVRADADRTSFRLLGPGTDRRVRL 324

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H +G H   N L  +  +     +V+  ++ +       GR +R               +
Sbjct: 325 HLLGTHQVDNALGAVAALHAGGLNVEDVLRGMEDLTAVSGRLQRIDEGQPFLALVDYAHN 384

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
             A          +L  +     GR + VLG     GE        L    +      V 
Sbjct: 385 VAA-------QRRLLPFLRTLTGGRLVVVLGA---TGERDPGKRGPLGRTAAQLG-DVVI 433

Query: 406 LSGF-----HVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++          AL++          S  VH     D       S    GDVVVV     
Sbjct: 434 VTDESPHDDDPAALREAVAGGARGAASAQVHVEADRDRAIRLAVSLADPGDVVVVSG-RG 492


>gi|302386509|ref|YP_003822331.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
 gi|302197137|gb|ADL04708.1| UDP-N-acetylmuramyl-tripeptide synthetase [Clostridium
           saccharolyticum WM1]
          Length = 491

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 143/470 (30%), Gaps = 44/470 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             F + L+ +    +       V  +  DSR       F  +KG   D H+FI   V  G
Sbjct: 1   MKFKEWLKDLTYEVLQGSLDVEVEEVIYDSRKARNGAVFVCMKGTRTDSHEFIPEVVNAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
             ++VV            +    V +   AL  L  A       K   I +TG+ GKTTT
Sbjct: 61  VQILVVERKTE---LPDGVTAILVHNAREALALLSAARFGYPAEKMVTIGVTGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L +  K    IG+    IG                            ++ + E
Sbjct: 118 THMIKTVLEACGKKVGMIGTTGIVIGQEVTPTVNTTPESYELHQAFCHMAEAGCEYMVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S           +     + T I+P H+      +E A  +  ++          + 
Sbjct: 178 V--SSQAFKMHRVDGISFDYGLFTNISPDHIGP----DEHADFEEYLYYKSRIFSCCKVG 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +   E           +      + K+ DF+    +  ++  ++ ++   K +  +  
Sbjct: 232 IMNGDDEHWAEVVKDATCRLYSFSMEKKSTDFKAEAIRYIAQPDFVGLEFDIKGISQLSV 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+   L  VS+L+                   G+      ++    ++D ++
Sbjct: 292 RVNIPGRFNVANALAAVSVLSFLGLPKENICHGLEHLNVNGRMEIVYSSETCTVIVDYAH 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA          +LS +  +   R + V G     G  S+   I + +         +  
Sbjct: 352 NAVSMES-----LLSTLRDYRPKRLVCVFG---CGGNRSKDRRITMGDSAGRLADFTIIT 403

Query: 407 SG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +           +  ++ +L +                +  +    GD++
Sbjct: 404 ADNSRYEKTEDIIADIRKSLEKTGGKFIEIPDRREAIRYSITHAQPGDMI 453


>gi|229098385|ref|ZP_04229330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
 gi|229117411|ref|ZP_04246787.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228666021|gb|EEL21487.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-3]
 gi|228685002|gb|EEL38935.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-29]
          Length = 491

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 82/477 (17%), Positives = 153/477 (32%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G   ++D   +     S  +   +    +S++V 
Sbjct: 234 KYAVLNSDDPVAEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISH 403
            Y   P S++  +    Q +    G    ++G     G         + A V   Y    
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402

Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ S        +A+ D + +    +  E          +  S     D++++  K 
Sbjct: 403 IYTSDNPRSEDPVAILDDMIKGAKGNNYEVIVDRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|218132891|ref|ZP_03461695.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991764|gb|EEC57768.1| hypothetical protein BACPEC_00752 [Bacteroides pectinophilus ATCC
           43243]
          Length = 502

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 155/493 (31%), Gaps = 58/493 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M       ++++ I    I       V G++ DSR +    AF  I G   +GH +I   
Sbjct: 1   MGEAMKISNIIEKINASVISGSCDADVTGLTSDSRKVTAGGAFVCIMGAVSNGHTYIQDV 60

Query: 61  VQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA-- 112
           + +GAGL+VV++          +    ++ V   DD   A   ++ A        +    
Sbjct: 61  IGRGAGLIVVSSKYDYMQHFSDAKIPENVTVVETDDTRLAYALMSAAWFGYPAEKLFTIG 120

Query: 113 ----------------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
                           +  S G  T        +   +   A   +  ++         +
Sbjct: 121 ITGTKGKTTTTYMIRNVLESCGHKTGLIGTIETIIGDEHKPAHNTTPESYEIQESFAKMV 180

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
               +  + E+  S  G +   T  ++ +I V T I P H+     S  E+  S KA++F
Sbjct: 181 EAGCEAVVMEV--SSQGLMLNRTAGIQFNIGVFTNIEPDHIGPNEHSSFEDYLSCKAKLF 238

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--- 271
              +           +  +    +  A     +  +G S+ AD +    +   E      
Sbjct: 239 RQCD-------IGIVNADDEHVDRILANATCRVEKYGFSETADIRAADKELLYEHGKLGT 291

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS--VFHPKEGRGKR 329
                   ++++     G     N L  + +      D     KAL       +      
Sbjct: 292 KYHVSGLVNLDIELCMPGNFSIYNSLCAIAVTRHFNVDEQRLKKALYDVRVRGRIDIVDL 351

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                ++  FT++ +  +       A  S+L  +  +   R + V G     G   +   
Sbjct: 352 AEVNASRRDFTIMVDYAHNA----MALESLLKTLKEYNPKRIVTVFG---CGGNRDRDRR 404

Query: 390 IDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSS 440
            ++ EV    +   +  S         A+   +   I      + E         +   +
Sbjct: 405 FEMGEVSGRLSDFTIITSDNPRNEEPEAIIADIVTGISRTSGRHVEIADRREAIKYAVDN 464

Query: 441 LVDGDVVVV--KS 451
              GDV+VV  K 
Sbjct: 465 AQPGDVIVVAGKG 477


>gi|111018106|ref|YP_701078.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817636|gb|ABG92920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 537

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 76/495 (15%), Positives = 138/495 (27%), Gaps = 67/495 (13%)

Query: 6   TFHDLLQAIQGHS---IGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60
           T   L            G      V G+  D R+  I   + F A+ G    G +F   A
Sbjct: 29  TVSALAALAGARVEAPTGTAEHVIVTGV--DLRAQGIVEGDLFAALPGARAHGAEFAADA 86

Query: 61  VQKGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
           + +GA  ++ +    A + +L   +PV   DD  G L +L+     R   K  +I ITG+
Sbjct: 87  LARGATAILTDEAGFALVSALGSDMPVLVHDDPRGVLGELSATIYGRPSEKMQVIGITGT 146

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI-G---------------VPLTLARMPVDV 160
            GKTTT  ++  AL++  +T   +G+    + G                 L    +   +
Sbjct: 147 SGKTTTSYLVEAALTAAGRTTGLVGTIETRMRGRRVPSALTTPEAPQLHALFAVMLEQGI 206

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--------ASAKAE 212
           D  + E+  SH   +  +   VR  +   T ++  HL      E+         A+  + 
Sbjct: 207 DTVVMEV-SSHALSLGRV-DGVRFDVGAFTNLSQDHLDFHRDFEDYFAAKARLFAADSSV 264

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             +              +               T  S G    A             +  
Sbjct: 265 HAQHAVICIDDVWGQRMADVARGAHSIVTTVATTPDSEGAVWTAGPATVSPSGSQTFALT 324

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +     +E+   G       ++ + L               A+      +  G+  R 
Sbjct: 325 TAEGTTLDVELRLPGQYNVANASLAVALCAAL-----GVDPRDAVEGIAGVDVPGRVQRI 379

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              Q F  ++D ++         A                              +    L
Sbjct: 380 DRGQDFLAVVDYAHKPAAVEAVIATLREQVRGRVAVVVGAG---------GDRDAGKRPL 430

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQ 438
               +      + ++           ++ A+              V              
Sbjct: 431 MGAAAARGADLLIITDDNPRSEDPAKIRAAVREGALGVPESERGQVWEVADRAKAIADAV 490

Query: 439 SSLVDGDVVVV--KS 451
                GDVV+V  K 
Sbjct: 491 GWAQAGDVVLVAGKG 505


>gi|325335910|gb|ADZ12184.1| Alanine racemase [Riemerella anatipestifer RA-GD]
          Length = 741

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 71/384 (18%), Positives = 144/384 (37%), Gaps = 19/384 (4%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  +    VDD +  L KLA           I ITGS GKT  KE L   LS   +   
Sbjct: 2   DNEHLSWLIVDDTVKFLQKLAHLHLKSHNIQTIGITGSNGKTIVKEWLYQCLSEDIRCVK 61

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              S+N+ IG+PL+L  +  +   GIFE+G+S   E+  L  +  P I V+T I  AH+S
Sbjct: 62  SPKSFNSQIGLPLSLLNIKPEHKVGIFEVGISEPNEMTTLETIFSPKIGVLTHIGSAHIS 121

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           NF   + +   K  +            +   +   +L +        +        N D 
Sbjct: 122 NFKSEKHLVDEKISL-------FKDSESIIFNGDNILVSNKINTLYSSKNLISYGFNKDN 174

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            +       ++            +             +   L I++++     +  K + 
Sbjct: 175 NIHISSNWKDRQQPITV--QCFDKSFSFPAQQRDEATLSNVLAIIAVMHLLEFSTEKMIE 232

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
             +  +    R           +I++S+N +  S+K        I  + + ++  ++ D 
Sbjct: 233 KINNLKAVEMRLESVNGIKNNLIINDSFNLDLDSLKI---AFEFIKSYQKPKKSLIITDF 289

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF--LF 436
            E    + + + ++A +++  N + V+L G  +   +  L  +       T + LF    
Sbjct: 290 TEK-SDADNLYQEVASLINEQNFNKVFLIGEEISQYQHLL--NTESFSFNTTNDLFSNQE 346

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRL 460
            +    + +++++K +      ++
Sbjct: 347 FKDL--ENELILLKGARKFEIEQV 368


>gi|294012784|ref|YP_003546244.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
 gi|292676114|dbj|BAI97632.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sphingobium japonicum UT26S]
          Length = 480

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 81/424 (19%), Positives = 143/424 (33%), Gaps = 30/424 (7%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L++ +      G      V+G +ID+R +AP   F A +G   +G DFI  AVQ 
Sbjct: 1   MRLGSLIEGLDAKPDAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARVNGEDFIPAAVQA 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA  VV                   D+      +LA           +A+TG+ GKT+T 
Sbjct: 61  GATAVVA----RPEARVEGAIHIASDNPRRLFAQLAARYFAPFPEVTVAVTGTNGKTSTV 116

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFEL--GM 169
           E+       +    A IG+      V      +                  GI       
Sbjct: 117 ELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLANMSGLKREGITHAAFEA 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  ++ T  +    A  T ++  HL     ++    AK  +F+ +       + + D
Sbjct: 177 SSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDEVVAPQGAAVVWAD 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             +     +        + S G    A  +L           ++++++GK+ +V    IG
Sbjct: 237 DEWSDKVIQRATKRGLRVLSVGVQGQA-LRLANRTPTQLGQTLDIEVEGKNYKVNLPLIG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            + A N L   G+      D    ++ L    P  GR          G    +D ++  +
Sbjct: 296 AYQAANALTAAGLAIAGGEDAGKVLELLGRVQPVRGR-LERAVITKAGAPVYVDYAHTPD 354

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   + +  + PH  GR IA+ G     G    +        ++     HV ++  
Sbjct: 355 G-----LRAAIEALRPHTRGRLIALFGA----GGDRDAGKRPQMGKVAADLADHVIVTDD 405

Query: 410 HVLA 413
           +  +
Sbjct: 406 NPRS 409


>gi|207721509|ref|YP_002251949.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
 gi|206586669|emb|CAQ17255.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum MolK2]
          Length = 514

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 143/481 (29%), Gaps = 55/481 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G      DG   I  A++ GA
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+             + +  VD +      LA             +I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPADAPVRILPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +  ALS   +  A +G+     G   TL          I                  
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVA 190

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +      R  IA+ T +   HL     + E   AKA +F        +   
Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            D +   LL      +        G+           +    +     +  +V       
Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGARHWLRATSVRAHRTGTTFDVDGSFGRA 310

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N L  LG++ +       AI  L    P  GR +R+           
Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++  +  L+ I+    G+  AV G     G             ++    
Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            HV L+  +  +         + D +         E      L         DVVVV  K
Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|304389588|ref|ZP_07371550.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304327141|gb|EFL94377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 516

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 136/479 (28%), Gaps = 43/479 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL QA+ G   G      V G  ID+R++   E F A+ G H  G  F   A  +GAG
Sbjct: 22  VTDLAQAVGGTVHGDGGS--VRGAVIDNRAVLGGELFVAMPGFHVHGAKFAADAASRGAG 79

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ + + +A +  L IP   V DV     + A  A  R   + +   +TG+ GKTTT  
Sbjct: 80  AVLSDPEGMAFLTDLDIPAIIVPDVASVAGQAAAIAFNRPCQQLSAWGVTGTNGKTTTTY 139

Query: 125 MLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFEL--GMS 170
           +L   L  +    + +G+    +G             P   A     V   +  +   +S
Sbjct: 140 LLRHLLHRVGHLSSLVGTVEAAVGKKTAPAFITTPQAPQLQAFAATTVQENVHHMVVEVS 199

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +       T ++  HL     +E+    KA +F        + +     
Sbjct: 200 SHALAMGRVDPLHFACVGFTNLSQDHLDYHGTMEQYFQTKASLFSQQRSDRQVIIVDGV- 258

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + + L  +    G     +   +        K  +                E        
Sbjct: 259 WGQRLAEQLERSGQHDFVTLSLTGRPADWQGKIIELDGGFTELRLRAFDGKEASVQVRMP 318

Query: 291 HMAQNMLMTLGI-----VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +   L I         +           +           R  L      +I + 
Sbjct: 319 GTFNAINAALAIVMVVTGLSPSPRQLDGDILRHLTVNPIRLDVPGRMELLCEEPRVIVD- 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  NP S K  +     +    +GR + V+G   +           +   ++       +
Sbjct: 378 FAHNPDSTKVLLDT---MRISTKGRLLLVMGADGQ----RDPGKRPILGQIAAELADFTY 430

Query: 406 LS----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           ++          G     +                +             D VV+     
Sbjct: 431 VTDGDIHEEEPSGIRRDVMAGMKGYEEKFVEVAPREVAIERAILDARPEDTVVITG-RG 488


>gi|218659512|ref|ZP_03515442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D
           -alanyl-D-alanine synthetase protein [Rhizobium etli
           IE4771]
          Length = 156

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 70/139 (50%), Positives = 92/139 (66%)

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              Q     IDESYNANPASM+AAI++L+   P G GRRIAVLGDM EMGE ++  H DL
Sbjct: 8   WRRQRQLHAIDESYNANPASMRAAIALLAAAEPTGRGRRIAVLGDMLEMGEYAEKVHTDL 67

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           A  L    I HVWL+G  + ALK++LP S+HV Y E    L  ++ +S+  GDV++VKSS
Sbjct: 68  AGPLLAAGIEHVWLAGADMAALKESLPESVHVEYREKTSELTDYVLNSVAPGDVLMVKSS 127

Query: 453 NSCGFYRLINLLLEEFPAI 471
              GF +++  LL++FP I
Sbjct: 128 LGIGFGKIVAALLDKFPGI 146


>gi|229031546|ref|ZP_04187546.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
 gi|228729835|gb|EEL80815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1271]
          Length = 491

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 148/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAILADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTPEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D + +  + +  E             ++    D++++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|189423744|ref|YP_001950921.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter lovleyi SZ]
 gi|189420003|gb|ACD94401.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter lovleyi SZ]
          Length = 506

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 73/490 (14%), Positives = 136/490 (27%), Gaps = 59/490 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  +   +        V+ ++ DSR +     FFA+ G   DGH FI  AV     
Sbjct: 3   LEQLLHEVPLQATHGNLDVTVSALTCDSREVTAGTLFFALHGSKVDGHRFISQAVT---A 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
                    AS     +P   V +   A+  +A            +I ITG+ GKTTT  
Sbjct: 60  GAAAVVLEDASYAPEQVPWLQVTNGRQAMALMAARFFGNPTRDLPLIGITGTNGKTTTSY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTL--------------ARMPVDVDFGIFELGMS 170
           +L   L++     A +G+ +   G                    R   D     F + +S
Sbjct: 120 LLEGILTAAGLPPAVLGTISYRFGTTCIEASHTTPESTELQGIFRQLADAGAQAFVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228
                +         I V T +   HL     ++    A  +           T   +  
Sbjct: 180 SHSLEQRRVDGSVFDIGVFTNLTRDHLDYHGTMQAYGSAKQRLFSELLRPDDRTPLRHAV 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        +  +G +  ++  +R+           +             +
Sbjct: 240 INADDPAAEEFIRAAACPVIRYGLAPGSEVTVRETTSSVNGISAILVTPQGEQPFHSRLL 299

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N+L        L   +   I+ +       GR        N+   T + +  + 
Sbjct: 300 GGFNLSNILAAAAAGVALGLPLQAIIQGIEQHTTVPGR---LERVENRAGVTCLVDYAHT 356

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A      +VLS +      R I V G     G    +    +   ++        ++ 
Sbjct: 357 GDA----LENVLSTLKDLAGARIITVFG----CGGDRDNGKRPIMGRIAAGYSDLAVVTS 408

Query: 409 FHV---------LALKDAL----------------PRSIHVHYSETMDGLFLFIQSSLVD 443
            +            ++  +                P        E               
Sbjct: 409 DNPRTEDPHEILRQIRAGILPLGLREYRPDELTAPPEDKGFVMLENRREAIRLAVRLARP 468

Query: 444 GDVVVV--KS 451
           GD++++  K 
Sbjct: 469 GDILLLAGKG 478


>gi|300702957|ref|YP_003744559.1| UDP-N-acetylmuramoylalanyl-d-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
 gi|299070620|emb|CBJ41915.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CFBP2957]
          Length = 514

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 143/481 (29%), Gaps = 55/481 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G      DG   I  A++ GA
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+             + V  VD +      LA             +I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPADAPVRVLPVDGLAELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +  ALS   +  A +G+     G   TL          I                  
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLVDLHRAGARAVA 190

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +      R  IA+ T +   HL     + E   AKA +F        +   
Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            D +   LL      +        G+           +    +     +  ++       
Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDIDGSFGRA 310

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N L  LG++ +       AI  L    P  GR +R+           
Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVSWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++  +  L+ I+    G+  AV G     G             ++    
Sbjct: 371 ----YAHTPDALEQTLCALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            HV L+  +  +         + D +         E      L         DVVVV  K
Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|261368781|ref|ZP_05981664.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282569127|gb|EFB74662.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 486

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/475 (11%), Positives = 116/475 (24%), Gaps = 46/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              ++L++ I            +  I+ DSR   P   F  + G   DGH F   A  +G
Sbjct: 1   MKLNELVRHID---HTGASDAEITAITYDSRKAGPGALFVCLVGAWMDGHTFARSAYDQG 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-----------------K 107
               +V            +      D   AL  +                          
Sbjct: 58  CRAFLVEH---TLDLPADVAQIVTQDTRAALAVIGADFYGNPAEQLHIIGITGTKGKTTT 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A + +   +    +   + +  ++      A   +    + +     +M       +  L
Sbjct: 115 ALLTSAILTEAGLSCAYIGSNGVNIAGTHEATANTTPESLELHRLFRKMLDANVHHVV-L 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           +   +   T ++  H+      E       +  +            
Sbjct: 174 EVSSQALRHHRVDGIPFEVVAFTNLSEDHI---GPGEHPDFEDYKAAKRRLFAEYNARVM 230

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +  + +     A       SFG   +AD++     Q   ++ + +    +        
Sbjct: 231 VYNADDAVSDYMRAGFAGQQVSFGIGHDADYRAVDLAQYRSETALGIDFTCEHGGEATPV 290

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                             L           +          R+         T I +  +
Sbjct: 291 RVMSPGAFSASDALCAIALCGAFGVTPDQAAKTLAHTPVEGRFEVVEGLPGRTFIVDYSH 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              A      S L  +  +   R I V G    +G  +Q    +LAE  +     +  L+
Sbjct: 351 NGLA----LTSALKTLRAYQPRRLICVFGS---VGGRTQVRRRELAE-AASAWADYSILT 402

Query: 408 GFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   +                    +    GD+V+   K 
Sbjct: 403 SDNPDFEDPMNILRDIDACMAPDALYALIPDRAEAIRQAVAMAEPGDIVLFAGKG 457


>gi|254497127|ref|ZP_05109947.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
 gi|254353665|gb|EET12380.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           drancourtii LLAP12]
          Length = 483

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 86/471 (18%), Positives = 155/471 (32%), Gaps = 45/471 (9%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L Q ++      V    + G+  DSR I P + F A  G   DG  FI  AV  GA  VV
Sbjct: 3   LTQLLKSWLNQEVVDCTITGMQNDSRLIQPGDLFVAYPGSAADGRLFIAKAVSAGAVAVV 62

Query: 70  VNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM 125
                    G    SIP   V D+   L  +A A      +  TI  ITG+ GKTT    
Sbjct: 63  YEPANFPIDGVLPTSIPCIAVPDLATKLAYIAKAFYDDPENSLTITGITGTNGKTTIAYQ 122

Query: 126 LTIALSSIKKTYACIGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSH 171
           L  A   + +  A IG+                P +L    +   +         + +S 
Sbjct: 123 LAQAHHLLGQGAAYIGTIGQGNVNELQPLDNTTPDSLRLQKLLHQYKEQGLKQVCMEVSS 182

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +     +    A+ T +   HL     +E  A+AKA +F G      I    DD +
Sbjct: 183 HALAQHRVDALTFKQAIFTNLTLDHLDYHHNMENYAAAKAILFSGESLQWAIINQ-DDEY 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +++ A           ++G  ++ D +   W+     + ++V        +    +G  
Sbjct: 242 QQVMAAAL--KPHVKKLTYGLREDCDVKAVNWRMDINGTEIDVHSPWGQHHLRIKALGAF 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L     +       +  +  +S      GR       +    + L+D ++  +  
Sbjct: 300 NIYNSLAVFSSLLASGYAPEKVVAVMSQLKAAPGRL----EIVASAPYVLVDYAHTPDAL 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                 + L  +    +GR   V G     G         +   ++  N   + ++  + 
Sbjct: 356 E-----NALVTLGQIKKGRLWVVFG----CGGDRDKSKRPMMGKIASLNADKIIITSDNP 406

Query: 412 L---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                      +   +  + HV      +    +   +    D++++  K 
Sbjct: 407 RTEDPQTIIEEIIHGITPAAHVMQFVNREEAIAYALENANIDDIILIAGKG 457


>gi|169794475|ref|YP_001712268.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213158953|ref|YP_002320951.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
 gi|301345412|ref|ZP_07226153.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB056]
 gi|301510058|ref|ZP_07235295.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB058]
 gi|301596006|ref|ZP_07241014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AB059]
 gi|169147402|emb|CAM85263.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter baumannii AYE]
 gi|213058113|gb|ACJ43015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter baumannii
           AB0057]
          Length = 499

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 81/465 (17%), Positives = 150/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   +         ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCSDVRQRMGDWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179
           +    +     +  +P                    D+         L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++K+  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGINFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|228902420|ref|ZP_04066574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
 gi|228857164|gb|EEN01670.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 4222]
          Length = 482

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF        A        +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  IG      +                +   VD  + E+    L   R        
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183

Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +AV T +   HL     +EE   A        G             +  + +  +    
Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L     
Sbjct: 243 TAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    + T I  +       GR   +        +T+I + Y   P S++  +    Q
Sbjct: 303 GLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417
            +   +G    ++G     G         +   ++    +H   +          A+ D 
Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411

Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    +  E             +++   D++++  K 
Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|228966868|ref|ZP_04127912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792967|gb|EEM40525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 482

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 48/459 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF        A        +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  IG      +                +   VD  + E+    L   R        
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183

Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +AV T +   HL     +EE   A        G             +  + +  +    
Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L     
Sbjct: 243 TAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    + T I  +       GR   +        +T+I + Y   P S++  +    Q
Sbjct: 303 GLVSGVKLQTIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417
            +   +G    ++G     G         +   ++    +H   +          A+ D 
Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411

Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    +  E             +++   D++++  K 
Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|239501973|ref|ZP_04661283.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           AB900]
          Length = 499

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 150/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           P+   +G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PRQPFHGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   + +       ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCPDVRQRMGEWQKRYLQQADGVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179
           +    +     +  +P                    D+         L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++ +  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAQADLMINSAQ 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|167755814|ref|ZP_02427941.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
 gi|167704753|gb|EDS19332.1| hypothetical protein CLORAM_01330 [Clostridium ramosum DSM 1402]
          Length = 458

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/448 (17%), Positives = 151/448 (33%), Gaps = 54/448 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR++ P + F AI     DGHD+I  A+  GA  ++         GS  +    V+  
Sbjct: 7   TDSRAVKPGDTFIAIPNVARDGHDYIEQAIANGATKIIAEH------GSYKVETIIVEST 60

Query: 92  LGAL-NKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148
              L   L        K   +I +TG+ GKTTT  M    L  +KK  A +G+   + G 
Sbjct: 61  REYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYYGD 120

Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                            + L      V++ + E+  SH  +     H +       T + 
Sbjct: 121 VKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEV-SSHALDKDR-IHGLEFDEVAFTNLT 178

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  A+AK  +F          +N DD  ++    +               
Sbjct: 179 QDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLE------SNNNIIIGQ 232

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            ++D ++ +       +  + +      +   + +G +   N L+ L +V+ L   ++  
Sbjct: 233 HDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIEDI 292

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +          GR +  +   N  F       Y   P ++   +    +      GR I 
Sbjct: 293 LALNDKLKAPAGRMELLKYGTNSIFV-----DYAHTPDAVINVLKSAEEFK---NGRIIT 344

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSE 428
           ++G     G    +    +    +L +  +V  +  +  +     + D +   +     E
Sbjct: 345 IIG----CGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFE 400

Query: 429 ---TMDGLFLFIQSSLVDGDVVVV--KS 451
                    +     L   D++++  K 
Sbjct: 401 IEVDRQKAIIKGMQQLKHNDILMILGKG 428


>gi|295396936|ref|ZP_06807059.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
 gi|294974829|gb|EFG50533.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Aerococcus viridans ATCC
           11563]
          Length = 495

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 24/256 (9%)

Query: 9   DLLQAIQGH----SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +LL+             V Q  + GIS  S  +     F AI G   DG  +I +A+++G
Sbjct: 7   ELLEQSGVTARNPLPADVEQLEITGISESSLQVTNGHLFVAISGYATDGEAYIGNAIERG 66

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTT 122
           A L+V  +D+ A     ++P   VD+    L+ L  A          +I ITG+ GKTTT
Sbjct: 67  ASLIVTESDLTARE---NVPFIQVDNARERLSLLVSAFYHNPSQDKLVIGITGTNGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-------------PVDVDFGIFELGM 169
              L   L       A  G+  N I      +++               + D  + E   
Sbjct: 124 ALFLQHLLKKAGFEVAYFGTVYNEITCQRYESKLTTPSATEIQASLAWSNDDVVVIE--T 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  ++    ++   A+ T +   HL  +  +E    AK  +F  ++  G   +N   
Sbjct: 182 SSQGLHQYRMAGMQFDYALFTNLQHDHLDYYKTMEAYYQAKKSLFSLMKADGKAVINSYT 241

Query: 230 SFFELLKAKSHALGIK 245
            +   L  +  A G +
Sbjct: 242 MWGNRLAKELAANGKQ 257


>gi|225377874|ref|ZP_03755095.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
 gi|225210312|gb|EEG92666.1| hypothetical protein ROSEINA2194_03533 [Roseburia inulinivorans DSM
           16841]
          Length = 337

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 112/338 (33%), Gaps = 36/338 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL+ I   S+       +  I   S  +     F  I G   +GH+++  AV+ 
Sbjct: 1   MQLLRSLLKQILYESVRGDDDRKITDICCHSEKVKEGSLFVCINGYRNNGHEYVPQAVEH 60

Query: 64  GAGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GA ++VV+                    ++   I   +I V  V D   AL+ L+ A   
Sbjct: 61  GAAVLVVDDRYVIESRSGPVILTEHMKVNVYELIRDRNICVVAVRDTRKALSALSAAFFD 120

Query: 105 RS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PL 151
               +  +I ITG+ GKTTT  +    L         IG+  ++ G              
Sbjct: 121 HPAERMKMIGITGTNGKTTTAFLTAGILQEAGYRVGMIGTIESYDGRRRETVKNTTPESC 180

Query: 152 TLARM---PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            + R+    V+ +     + +S  G     T  +   I V   I P H+         + 
Sbjct: 181 EIHRLLSRMVENECDCCVMEVSSQGIALQRTADIFFDIGVFLNIEPDHIGK-GEHATFSE 239

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                   + + G   +N DD   + + A                  A+ +    +  S 
Sbjct: 240 YLYCKSRLMRQCGIGIVNQDDPNVDKILAGHTCEVENFSIRHPSDVMAEDEWYGMESGSL 299

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           QS   V+ + +  ++V    G     N L  + +    
Sbjct: 300 QSHFTVKREWRREDIVMQLPGQFNIYNALAAISVAGHF 337


>gi|228992650|ref|ZP_04152576.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
 gi|229006198|ref|ZP_04163884.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228755039|gb|EEM04398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides Rock1-4]
 gi|228766982|gb|EEM15619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus pseudomycoides DSM 12442]
          Length = 491

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 81/477 (16%), Positives = 155/477 (32%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVTNGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTYRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG---------------VPLTLARM-PVDVDFGIFE 166
             ++   + +       IG+ N  IG               +  T  RM   +V+  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFRRMVEQNVNSAVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH   +  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALSLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G   ++D   +     S  +   +    +S+ + 
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVITYGIDTHSDIMAKDIVMTSGGTTFTLVTPSESVNIT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L  +    +    + T I  ++      GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAAIAATLVSGVTLQTIIHVVTNLTGVPGR---FEVVDGGQDYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  ++   Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLTTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMAGVATEYATHA 402

Query: 405 WLS-----GFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+          A+ D   A  +  +               S     D++++  K 
Sbjct: 403 ILTSDNPRSEDPQAILDDMLAGAKGNNYEVIVDRKEAIFHGVSEAKAEDIIIIAGKG 459


>gi|149177966|ref|ZP_01856563.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
 gi|148843159|gb|EDL57525.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Planctomyces maris DSM 8797]
          Length = 505

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 147/461 (31%), Gaps = 50/461 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                FV  I  DSR   P + F  + G       ++  A+QKGA  ++    +      
Sbjct: 28  DCADVFVTSIHSDSRCCQPGDLFAVMNGTKECAAKYVPEAIQKGAKAILTERPLTG---- 83

Query: 81  LSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           L +P   V DV      L      R         +TG+ GKTT   ++   + S  +   
Sbjct: 84  LQVPQCIVPDVRKVYALLCSELAGRPARHLETAGVTGTNGKTTVSWLIRSIMQSSGRRTG 143

Query: 139 CIGSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLV 182
             G+   H  +    A +                       + E+  SH  +   L  + 
Sbjct: 144 LSGTVEYHDSISSRPASLTTPDANELSQLLAEMVCRKATHAVMEV-SSHALDQNRLAGI- 201

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              + VIT +   H          A+ KA + + ++  GT+ LN+DD       A+    
Sbjct: 202 DLSVGVITNVTQDHFDYHQNFGNYAACKARMIQQVKPEGTLVLNWDDPTCRSFAAEV--K 259

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             +T+ ++     AD   +  ++ +  +  E+   G S+ V    IG H   N L     
Sbjct: 260 SSQTLLTYAIDGQADLVAQNLQESTAGAEFEILFNGDSVPVRTSLIGTHNISNCLAAAAA 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +      +       GR            FT++ +  + + A       V+  
Sbjct: 320 CLSLGVSLSEIALGIERLVTVPGR---MERVTCGQSFTVLIDYAHTDDA----LSHVIRS 372

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLA 413
                  R   V G     G    +    L  + +      V ++  +         + A
Sbjct: 373 AKRLCSQRVFCVFGA----GGDRDTGKRSLLGMAA-SEADRVIITSDNPRSEDPAQIIRA 427

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + +  L + +             +  S    GD+V++  K 
Sbjct: 428 VAEGCLNKGVSPEQIIDRREAIHYALSEARRGDLVLIAGKG 468


>gi|145223570|ref|YP_001134248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315443917|ref|YP_004076796.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
 gi|145216056|gb|ABP45460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium gilvum PYR-GCK]
 gi|315262220|gb|ADT98961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. Spyr1]
          Length = 512

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 156/482 (32%), Gaps = 51/482 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PL    DL+ A    + G VP   V G+++  +     + F A+ G    G  +   AV+
Sbjct: 12  PLGALADLVCAEPADA-GPVPDLQVTGVTLRGQHAQAGDLFAALPGSKAHGARYAADAVE 70

Query: 63  KGAGLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           +GA  V+ + D V   A+ G  ++P+         L ++A A   R      +I +TG+ 
Sbjct: 71  RGAVAVLTDADGVSEIAAHGGPAVPILVHPAPRSVLGEVAAAVFGRPSEHLRVIGVTGTS 130

Query: 118 GKTTTKEMLTIALSSIKK-------TYACIGSYNNHIGVPLTL---------ARMPVDVD 161
           GKTTT  ++   L S  +           I       G+             A +   VD
Sbjct: 131 GKTTTTYLVEAGLRSAGRVAGLIGTVGVRIDGRAQPGGLTTPEAPDLQALLAAMLEQGVD 190

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEK 219
             + E+  SH   +  +  +    +   T ++  HL     +++   A A+         
Sbjct: 191 TVVMEV-SSHALTLGRVDGVS-FAVGGFTNLSRDHLDFHPTMQDYFEAKARLVDPTSPTH 248

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +  DD +   + A++ A       +   + +AD+ +++ +         + +   
Sbjct: 249 AARSVICVDDEWGRAMAARADAP-----VTVSVTGDADWWVQEVRALDGGVQDFLAVDPA 303

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +                  L +  +      +  +A          G+       Q F 
Sbjct: 304 GVHHALEIGLPGGYNVANCLLAVALLDA-VDVSPEQAAPGLRDATVPGRLEAVDRGQPFL 362

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D ++     +      VL  +     GR   V G     G        +    ++  
Sbjct: 363 ALVDYAHKPGALAA-----VLQTLREQCAGRLAVVFGA----GGDRDQGKREPMGRVAAE 413

Query: 400 NISHVWLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               V ++     G     ++ A+                   +       +GD+V++  
Sbjct: 414 LADLVVVTDDNPRGEDPAVIRAAILRGASGAQTVEIGDRRAAIVHAVQWAREGDIVLIAG 473

Query: 450 KS 451
           K 
Sbjct: 474 KG 475


>gi|229174581|ref|ZP_04302111.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
 gi|228608886|gb|EEK66178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus MM3]
          Length = 491

 Score =  113 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFLKMVEHGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHDRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLETVIDVIKQLAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLSGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +       A+ D + +  + +  E             ++    D++++  K 
Sbjct: 403 IYTSDNPRSEEPGAILDDMVQGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|319764377|ref|YP_004128314.1| udp-n-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|330826596|ref|YP_004389899.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
 gi|317118938|gb|ADV01427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicycliphilus
           denitrificans BC]
 gi|329311968|gb|AEB86383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Alicycliphilus denitrificans K601]
          Length = 501

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 82/464 (17%), Positives = 147/464 (31%), Gaps = 50/464 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            L +    +  ++    G         +  DSR +AP +AF A  G   DG   +  A+ 
Sbjct: 6   ALASVDAAVAWLRARVTGT--------LQTDSRLVAPGDAFIAWPGAATDGRAHVGDAMA 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
           +GA   +V  + V   G     +  +  +  A   +A     R   +  ++A+TG+ GKT
Sbjct: 58  RGAVACLVEQEDVEPFGLAGEHIAALPGLKAATGLIAAQWFGRPSERLQVLAVTGTNGKT 117

Query: 121 TTKEMLTIALS-----SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------- 164
           +T   L  AL+      +     C       IGVP  L+   +     +           
Sbjct: 118 STAWWLADALNGLSKKELPALAGCALVGTLGIGVPPGLSSTGMTTPDPVRLQRAFAQFAQ 177

Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  +  S +G         +  +A+ T +   HL   S +     AK  +F+    
Sbjct: 178 EGLGACAIEASSIGLAEQRLAGTQISVALFTNLTQDHLDYHSDMAAYWQAKRVLFDWPGL 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D     L        G   ++S      A  Q R            V    +
Sbjct: 238 RAAVVNIDDAHGARLHAE--LQGGGLDLWSVSIQGPARLQARDIVHRGAGLAFTVAESAQ 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++ +    IG +   N+L  +  +  L   +  A+ A +   P  GR ++   A      
Sbjct: 296 ALPLQTRLIGLYNVSNLLGVIAGMRALGVPLAQALDACARLAPVPGRMEQLAFAGQPLVA 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P ++  A++ L  ++    GR   V G     G    +    L   ++  
Sbjct: 356 VD----YAHTPDALHQALAALRPMAAQRGGRLWCVFG----CGGNRDAGKRPLMGAVAQR 407

Query: 400 NISHVWLS-----GFHVLALKDAL----PRSIHVHYSETMDGLF 434
               V ++     G    A+   +         V   E      
Sbjct: 408 EADRVIVTSDNPRGEDPRAIIHQILLGTIAGTSVRAEEDRAAAI 451


>gi|228909740|ref|ZP_04073563.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
 gi|228850029|gb|EEM94860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis IBL 200]
          Length = 482

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 144/459 (31%), Gaps = 48/459 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I  DSR +     F  +KG   D HDF        A        +      + 
Sbjct: 10  ENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ-----AAAQGAAAIVAERPIDVD 64

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +   +L  LA     +   K  +I ITG+ GKTTT  ++   + +       I
Sbjct: 65  VPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTTSHIMDEIMRAHGHKTGLI 124

Query: 141 GSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           G+ N  IG      +                +   VD  + E+    L   R        
Sbjct: 125 GTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVMEVSSHALDLGRVHGCDYD- 183

Query: 185 HIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +AV T +   HL     +EE   A        G             +  + +  +    
Sbjct: 184 -VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRS 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L     
Sbjct: 243 TAATVVTYGIDTRSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAA 302

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++T I  +       GR   +        +T+I + Y   P S++  +    Q
Sbjct: 303 GLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQ 358

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA 417
            +   +G    ++G     G         +   ++    +H   +          A+ D 
Sbjct: 359 FA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDD 411

Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           + +    +  E             +++   D++++  K 
Sbjct: 412 MVQGASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 450


>gi|163941654|ref|YP_001646538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus weihenstephanensis KBAB4]
 gi|163863851|gb|ABY44910.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus
           weihenstephanensis KBAB4]
          Length = 491

 Score =  113 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 80/477 (16%), Positives = 152/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKNAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   R     S  +   +    +++ V 
Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISH 403
            Y   P S++  +    Q +   +G    ++G     G         +   ++  Y    
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402

Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ S         A+ D +   ++ +  E             S +   D++++  K 
Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|71278293|ref|YP_271118.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
 gi|71144033|gb|AAZ24506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Colwellia psychrerythraea 34H]
          Length = 530

 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 53/459 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR+I   + F AI G   DG  +I  A+++GA LVV   + +   G   +     D+ +
Sbjct: 36  DSRAIVDGDIFCAIIGHDQDGRQYIEQAIKQGAKLVVAECENITEHG--DVTFASSDNTV 93

Query: 93  GA---------LNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                      L  L        +   T++ ITG+ GKTTT ++L   LS+ +KT A IG
Sbjct: 94  AIVKFYQLNQHLFTLTKNYYQAPQDNMTLVGITGTNGKTTTSQLLAQMLSAYQKTCAVIG 153

Query: 142 SYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +                P       L +   D  F    + +S     +         IA
Sbjct: 154 TNGAGSIDNLHPIENTTPGACELHQLFKRFSDEQFSYVAMEVSSHALSQNRVQADLFDIA 213

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIK 245
           + T ++  HL     +     +K +IF        +    D    + L+   K   L + 
Sbjct: 214 IFTNLSRDHLDYHGSMASYGESKKQIFSADSNQVAVVNFDDQQAKKWLENWPKQQTLWLY 273

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           +  +   +       +            +      +++    +G     N+L  + ++ I
Sbjct: 274 SRETDNSNYKNFVTAKGINHHRHGVSFTLMSHLGDIDITSPLLGDFNIDNLLAAISVLLI 333

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               +        +         R      +   T + +  +   A        L     
Sbjct: 334 QGIPLSEIPH---LVTQVSAIAGRMEATSAKNLATAVVDYAHTPDA----LEKALQACRQ 386

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-- 418
           H  G    V G     G         L    +     H+ ++           + + +  
Sbjct: 387 HCAGELYVVFG----CGGDRDKGKRPLMAQAAEKYADHLVVTNDNPRSEDAQLIANDIVA 442

Query: 419 ----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               P +  +      +   L   +    GD+V++  K 
Sbjct: 443 GFTCPDAEQISIILEREQAVLKTLNKAKPGDIVLLAGKG 481


>gi|229013099|ref|ZP_04170264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
 gi|229134724|ref|ZP_04263533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|229168655|ref|ZP_04296377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228614811|gb|EEK71914.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH621]
 gi|228648770|gb|EEL04796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST196]
 gi|228748353|gb|EEL98213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus mycoides DSM 2048]
          Length = 491

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 151/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   R     S  +   +    +++ V 
Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +   ++ +  E             S +   D++++  K 
Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNGNNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|332305220|ref|YP_004433071.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332172549|gb|AEE21803.1| UDP-N-acetylmuramyl-tripeptide synthetase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 515

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/490 (15%), Positives = 138/490 (28%), Gaps = 50/490 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L T   + Q +            V  + +DSR +A   AF A+KG   DG DFI  AV
Sbjct: 7   IQLNTTQSI-QPLLAKFGIETADIMVESLVLDSREVAIHSAFIALKGHVRDGRDFIPQAV 65

Query: 62  QKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAAR--LRSKATIIAITG 115
             GA +++   D     G  S+     +    D+   L+ LA        S+  II +TG
Sbjct: 66  SLGAKVIIAECDTQQEHGQTSMREQSLIISFYDLSAQLSALAATFYHFPASEMQIIGVTG 125

Query: 116 SVGKTTTKEMLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------ 165
           + GKT+T ++ +                     +  G   +           I       
Sbjct: 126 TNGKTSTVQLTSQLAALLNKRAASIGTLGSGVISCTGECASFGETINTTPDAITMHKLMA 185

Query: 166 ----------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                      L +S    ++     ++  +AV+T +   HL     ++  A AK EI  
Sbjct: 186 QFAQDNVKQVALEVSSHALVQKRVAALKVDVAVLTNLTRDHLDYHGTMQAYAQAKREILT 245

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWM 272
             E    +    +    + L    + +         +S    NA       +        
Sbjct: 246 QPELKFAVLNGNEIESKQWLAQLPNTVTPVVYGIDDESLLLGNAQKVCLAKEVEYSSQGC 305

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L     E                   I S L         A          G+  R 
Sbjct: 306 RFTLVSSWGECEIQLSLLGRFNIFNALAAIASQLCLGQALTDIADVAQQLVPVAGRMERF 365

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +  +    ++D ++  +          L  +  H EGR   + G     G         L
Sbjct: 366 SDEKSPTVVVDYAHTPDA-----LKQALLALRQHSEGRLFVIFG----CGGDRDKGKRSL 416

Query: 393 AEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
               +      V ++  +            +     +   +              +    
Sbjct: 417 MGEAAETCADVVMITNDNSRSEDPNAIASDILAGCIQPEKIQVELDRKCAIAKAVADATP 476

Query: 444 GDVVVV--KS 451
            D+++V  K 
Sbjct: 477 KDIILVAGKG 486


>gi|169350191|ref|ZP_02867129.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
 gi|169292974|gb|EDS75107.1| hypothetical protein CLOSPI_00935 [Clostridium spiroforme DSM 1552]
          Length = 454

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/450 (17%), Positives = 156/450 (34%), Gaps = 61/450 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR + P + F AI     DGHD+I  A+  GA  ++         G+ S+    V++ 
Sbjct: 7   TDSRKVKPGDTFIAITNVVRDGHDYIEQAIANGATKIIAEH------GNYSVETVIVENT 60

Query: 92  LGALNK-LAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148
              LN+ L        K   +I +TG+ GKTTT  M+   LS +K+  A +G+   + G 
Sbjct: 61  RKYLNEYLYKNYYPLIKDIKLIGVTGTNGKTTTCLMIYQMLSMLKQKVAYLGTVGFYYGN 120

Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                            + L      V++ + E+  S     +   + +       T + 
Sbjct: 121 IKKEVVNTTPDVDVLYSMLLEAKNNGVEYFVMEV--SSHALAKQRIYGLEFDEVAFTNLT 178

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  A+AK ++FE         +N DD   +    + +             
Sbjct: 179 QDHLDYHKTLENYANAKRKLFEKTRNNKIAIINGDDIHHQHFMLEGNNN---------IV 229

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            + D ++         +  + +    S  V  + +G +   N L  L +V+ L   ++  
Sbjct: 230 IDRDVKIENVDFSHLGTEFDFRYLDNSYHVRLNMVGRYNIYNYLTALLLVNKLGFKIEDI 289

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +          GR +  +   N  F       Y   P +++  +    +     +G+ I 
Sbjct: 290 LLLNEKLKAPAGRMELIKYNTNSIFV-----DYAHTPDAVENVLKSAQEFK---KGKIIT 341

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIH 423
           ++G     G    +    +   +++ N  +V  +  +               + +  +  
Sbjct: 342 IIG----CGGNRDATKRPIMGKIAVDNSDYVIFTSDNPRKEEPEAILNDITANLISDNFE 397

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                L + D++++  K 
Sbjct: 398 IIV--ERQDAIYKGVKMLDENDILMILGKG 425


>gi|229111384|ref|ZP_04240937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
 gi|229152112|ref|ZP_04280307.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228631461|gb|EEK88095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1550]
 gi|228672160|gb|EEL27451.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock1-15]
          Length = 491

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALNLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +         E             +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|83814912|ref|YP_446443.1| Mur ligase family protein [Salinibacter ruber DSM 13855]
 gi|83756306|gb|ABC44419.1| Mur ligase family, glutamate ligase domain protein [Salinibacter
           ruber DSM 13855]
          Length = 543

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 16/351 (4%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
           RS  +++ ITGS GKT+TK ++   L      YA   SYN  +G+ L +   +  +    
Sbjct: 191 RSDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVL 250

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E G+ + G++  L  +  P  +V+TTI  AHL      + IA+ K  + E     G  
Sbjct: 251 VLEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDRIAAEKGVLVERTAPDGPA 310

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSME 282
            LN DD     +  +  A G     S     +AD      +  +  + +      G ++ 
Sbjct: 311 VLNADDERVAAMAER--AAGPVWRISTEGHPDADITADDIRYDTGGTAFDVTDDTGTTVT 368

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N+L+ + +   +   +     A+    P E R +      ++G  T+I
Sbjct: 369 FETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQ----LRSRGDVTII 424

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++N+NP       + +  +S    G+R+ V   M E+G+   + + D   VL+ +++ 
Sbjct: 425 DDAFNSNPVGA---RNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLD 481

Query: 403 HVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            V L G    A     L +    +  +   +++      ++  L  GDVV+
Sbjct: 482 LVVLVGEEQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|302561120|ref|ZP_07313462.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478738|gb|EFL41831.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 452

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/215 (21%), Positives = 76/215 (35%), Gaps = 17/215 (7%)

Query: 11  LQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L  + G      P+    V GI+ DSR++ P + + A+ G    G DF+  A   GA  V
Sbjct: 17  LAELSGQLGVAAPEQTAEVTGITHDSRAVRPGDLYAALPGARAHGADFVTQAAGLGAVAV 76

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126
           + +      + +  +P   VDD    + +LA             I ITG+ GKTTT  ++
Sbjct: 77  LTDPAGAERVAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAYLV 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR-- 183
              L ++  T              +   R   +  D       M   G       +    
Sbjct: 137 EGGLRTVHSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTDAVAMEVSSHA 196

Query: 184 ----------PHIAVITTIAPAHLSNFSGIEEIAS 208
                       I V T ++P H+   S +E+   
Sbjct: 197 LVLGRVDGCVFDIGVFTNLSPEHMEFHSDMEDYFR 231


>gi|288871613|ref|ZP_06118234.2| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
 gi|288862802|gb|EFC95100.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium hathewayi DSM 13479]
          Length = 493

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 142/472 (30%), Gaps = 41/472 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M     F + L+ ++   I       V  +  DSR       F   KG   D H+FI   
Sbjct: 1   MEVFMKFREWLEELEYDVISGNLDIEVEDVIYDSRKARENVVFVCTKGTKIDSHEFIPDV 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVG 118
           V+ G   +VV      +     +    V     AL  L  A   R + K   I +TG+ G
Sbjct: 61  VKAGVKALVVERQ---AEIPDGVTAIRVHSSREALALLSAARFGRPQEKMITIGVTGTKG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE---- 166
           KTTT  M+   L S  K    IG+    IG              ++    +  +      
Sbjct: 118 KTTTTHMIKAILESCGKKVGMIGTTGIVIGSEVTPTMNTTPESYQLFESFERMVQAGCEY 177

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S           +R    + T I+P H+       + A       + L +     
Sbjct: 178 MVMEVSSQAFKMHRVDGIRFDYGLFTNISPDHIGP-DEHADFAEYLYYKSQLLSRCRIGI 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD  +  +  K  A  + +     ++     Q+    +               +E  
Sbjct: 237 VNRDDEHYREII-KDTACELASYSLEQEADFMAGQIHYVSEPEFVGLEFDVTGRYKLEAR 295

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G     N L  + + S L    +    AL           R     +    T+I +
Sbjct: 296 VNIPGKFNVYNALAAISVCSFLDLPKEKVRHALEHLS----VNGRMEIVYSSKKCTVIVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   +      S+L  +  +   R + V G     G  S+     + +         +
Sbjct: 352 YAHNAVS----MESLLKTLREYHPKRLVCVFG---CGGNRSKDRRYSMGDSAGRLADFTI 404

Query: 405 WL--------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
                     +G  +  ++ ++ +                +       GD++
Sbjct: 405 LTADNSRFEKTGDIIADIRSSIEKTGGEFIEIPDRREAIAYSMIHARPGDMI 456


>gi|260556908|ref|ZP_05829125.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
 gi|260409514|gb|EEX02815.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter baumannii
           ATCC 19606]
          Length = 499

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 150/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           P+    G S+DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PRQPFYGFSLDSRKVETGQIFIALTSYSQPEKT--RTFAEAALANGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   + +       ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLT 179
           +    +     +  +P                    D+         L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++K+  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQ 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFHLVSQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 461


>gi|260752703|ref|YP_003225596.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552066|gb|ACV75012.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 486

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 75/463 (16%), Positives = 143/463 (30%), Gaps = 41/463 (8%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A             V G ++DSR +     F A  G   +G DFI    +K      V  
Sbjct: 12  ASGYGLSPKEKDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                +          ++   A  ++A          + A+TG+ GKT+  E+       
Sbjct: 68  VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQFWMI 127

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------GMSHLGEIR 176
                A IG+             + +     +  L                  S  G  +
Sbjct: 128 AGHKAASIGTLGV--ITAENSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQ 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + +   +      T+ +  HL     +E   +AK  +F+         + + D       
Sbjct: 186 YRSDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAAKTV 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                     +   G+   A  +L   +  S+   + + +QG+S ++    IG +   N 
Sbjct: 246 IAHVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNA 304

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+  G+V     D+   + AL++  P  GR +R   + N      +D ++  +       
Sbjct: 305 LVAAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----L 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHV 411
            + +  + PH EGR   V G     G             ++     HV ++     G   
Sbjct: 359 RAAIEALRPHTEGRLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDA 414

Query: 412 LALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  +                          GD+V++  K 
Sbjct: 415 ATIRKEILVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 457


>gi|228922667|ref|ZP_04085967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837096|gb|EEM82437.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 491

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +           + D +      +  E             +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAVILDDMVHGARGNNYEVIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|320335408|ref|YP_004172119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
 gi|319756697|gb|ADV68454.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Deinococcus maricopensis DSM 21211]
          Length = 486

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 152/479 (31%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              HDL   +        P   V G++  +  + P  AF A++G   DGH F+  A   G
Sbjct: 1   MKLHDLAAELNLTPPAENPD--VTGVTHHAGWVRPGFAFVAVRGARVDGHAFMAEAAANG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V      +       +P   V     AL   A A          ++ ITG+ GKTTT
Sbjct: 59  AVCVFGE--GLPDGVPSPLPYVRVPGARAALADAAAALAGHPSRALRVVGITGTDGKTTT 116

Query: 123 KEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             +    L +                    + +    +      V  TL+ +       +
Sbjct: 117 SWITRHLLRAAGVRTGLLSTVGYELPDGALRHFPAHFTTPEAPEVQSTLSEIGASGGEAV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                SH   +  +   V   +AV T +   HL     +E+  + KA +    E+     
Sbjct: 177 VLEASSHALALDRV-RAVDWDVAVWTHLTSEHLDFHGTVEQYFADKARLV---ERARFSV 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   L+ ++ A       ++G    AD++    ++ S      V       +  
Sbjct: 233 LNADDPWTAQLRPRAAA-----YVTYGVEDVADWRAGDIEERSTGLHFHVLSPLGEFDAH 287

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N L  +   + L + VD  +  L+ F    GR               +  
Sbjct: 288 LPMVGRFNVHNALAAMAAAAHLGSGVDALVAGLASFRGVPGR---MELVPGGDAGVRVVV 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P S++ A+     +     GR I +LG     G         L EV +    + +
Sbjct: 345 DFAHTPPSLEKALEA---LRSTTRGRLIVLLGSAG--GPRDPGKRAPLGEVATRLADTAI 399

Query: 405 WL--------SGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
           +             +  +      +   ++              +    GD V++  K 
Sbjct: 400 FTEEDHRDTPLDDILQEMARGAREAGRGNFELVPDRRDAIRRAVALARPGDTVLLAGKG 458


>gi|215482065|ref|YP_002324247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332851363|ref|ZP_08433415.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332868774|ref|ZP_08438397.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
 gi|213987659|gb|ACJ57958.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acinetobacter baumannii AB307-0294]
 gi|332730079|gb|EGJ61407.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013150]
 gi|332733203|gb|EGJ64400.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Acinetobacter baumannii
           6013113]
          Length = 500

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 81/468 (17%), Positives = 152/468 (32%), Gaps = 62/468 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI-------KGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           PQ   +G S+DSR +   + F A+       K   +    F   A+  GA  V+  T++ 
Sbjct: 18  PQQPFHGFSLDSRKVETGQIFIALTSYSQPEKTRTF----FAEAALANGALAVISETELG 73

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALS 131
            +        +   DV   + +       ++       IIA+TG+ GKTT   ++   L 
Sbjct: 74  VANE------WVCPDVRQRMGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELI 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIR 176
           S ++    +     +  +P                    D+         L  S  G  +
Sbjct: 127 SSQQQRCAVMGTTGNGILPNLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQ 186

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +     IAV + ++  HL     +E  A AKA +F+       +    D     +++
Sbjct: 187 GRLNGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIE 246

Query: 237 AKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +  +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N
Sbjct: 247 SAQNNPAQPKILTYSLTQNTADYYITDLNYSLAGATFNLVSQQGSFAVESPLLGHFNVEN 306

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ++  L             ++AL  F PK          +       + +  +   A    
Sbjct: 307 LIAALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA---- 358

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
            I VL  +  H   +  AV G     G         L    +L   + V L+  +     
Sbjct: 359 LIQVLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTED 414

Query: 413 ------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +K  +      +H          F+      GD+VV+  K 
Sbjct: 415 PEQIFADMKQGIDFSGHRMHEIHDRREAIKFVAEQAQAGDIVVIAGKG 462


>gi|295695684|ref|YP_003588922.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
 gi|295411286|gb|ADG05778.1| Mur ligase middle domain protein [Bacillus tusciae DSM 2912]
          Length = 529

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 145/364 (39%), Gaps = 19/364 (5%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A  KLA     R    I+ ITGS GKT+TK +L   L+          SYN  +GV  
Sbjct: 169 RAAREKLA----QRPDLIIVGITGSYGKTSTKFILGTLLTQKFNVLVTPDSYNTPMGVCR 224

Query: 152 T-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
               R+  + +  + E+G    G+IR L  LV P I V+T + P HL  F  +E +A  K
Sbjct: 225 VVNERLKPEHEVFVVEMGARQPGDIRELADLVHPKIGVLTAVGPVHLETFGSVEAVARTK 284

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+ + L   G   +NYD+ +   L  ++  + ++                   +     
Sbjct: 285 YELIKSLPPDGLAVMNYDNPYCRELAKETRHVQVEGYGLESPGARLVVSDVHVSEKGTTF 344

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +  G+S       +G H   N+L  + +   L   +      +    P   R +  
Sbjct: 345 VLADRETGESASCRTDLLGRHQVLNILGAVTVARHLGLSLRQIAAGIGQLQPVPHRLQLI 404

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R         +ID+++N+NP   + A+ VLS  S    GR++ V   M E+G   + ++ 
Sbjct: 405 RSGGVY----VIDDAFNSNPTGTEVALEVLSGFS----GRKVVVTPGMVELGGEEERYNR 456

Query: 391 DLAEVLSLYNISHVWLSGFH-VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD 445
           +  + ++     HV L G      +   L         V    +++     +Q  L  GD
Sbjct: 457 EFGQRMAQV-CDHVILVGPERTKPIAAGLLDGGLPRDRVSVVTSLEEATAVLQQLLRPGD 515

Query: 446 VVVV 449
            V+ 
Sbjct: 516 AVLF 519


>gi|239996436|ref|ZP_04716960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Alteromonas macleodii ATCC 27126]
          Length = 521

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 82/494 (16%), Positives = 154/494 (31%), Gaps = 64/494 (12%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           ++A+        P   + G+++DSR +  + AF AIKG   DG DFI  A+  GA +++ 
Sbjct: 10  IKALLAKFGVDAPDIRIEGLTLDSREVNTRLAFLAIKGHERDGRDFIPQAISLGARVILA 69

Query: 71  NTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            T+  ++ G + +     +  + ++   L+ LA A       K T +A+TG+ GKT+T +
Sbjct: 70  QTEDSSAHGQMEMRDHSVIISLYELPQMLSALAAAFYDYPAQKMTTVAVTGTNGKTSTVQ 129

Query: 125 MLTIALSSIKKT---------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-- 167
           +LT    ++                       +       P  +    +  DF   E+  
Sbjct: 130 LLTQLKDALGTRSASIGTLGSSVFEGDETQWSNTPAANTTPDAIRMQYLLADFVQSEVRH 189

Query: 168 ---GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222
                S    ++     V+  IAV T +   HL     +EE   A        GL+    
Sbjct: 190 TAFEASSHALVQGRLGTVKTDIAVFTNLTRDHLDYHGTMEEYGKAKRLLLQQPGLKAVVL 249

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG--------------KSKNADFQLRKWKQCSE 268
              + +   ++    KS       I   G                ++           + 
Sbjct: 250 NVNDDESKKWDGAADKSITRIWTGIDESGLDGSGESECLREHNNPQSRHCFATNASYHAG 309

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E+     S  +     G     N+L  +G +       D  + A++   P  GR +
Sbjct: 310 GCSFELVSSWGSAAISLPLFGKFNISNVLSAIGTLLAEGERFDDVVNAVNAITPVPGRME 369

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +              + +A          VL     H  G+   V G     G      
Sbjct: 370 VFPVTGAANLVVDYAHTPDA-------LEKVLLSAKFHTTGKVWCVFG----CGGDRDKG 418

Query: 389 HIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQS 439
              L    +      + ++  +            +   L            +        
Sbjct: 419 KRPLMGQAAEVGADAIVITTDNSRSESPESIAEDIIAGLKNRELAVSIPDREQAIRHCLE 478

Query: 440 SLVDGDVVVV--KS 451
              + D+++V  K 
Sbjct: 479 HAHESDIIIVAGKG 492


>gi|196038596|ref|ZP_03105904.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
 gi|196030319|gb|EDX68918.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus NVH0597-99]
          Length = 491

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +   +  +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAVTKAKADDIIIIAGKG 459


>gi|85058422|ref|YP_454124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
 gi|123520084|sp|Q2NVV6|MURE_SODGM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|84778942|dbj|BAE73719.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Sodalis glossinidius str. 'morsitans']
          Length = 495

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 152/477 (31%), Gaps = 45/477 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +LL       +   P   +  +++DSR+ A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRELL----APWVPNAPGRVLREMTLDSRTAAAGDLFVAVAGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             VV   +  A  G +     +PV  +  +   L+ LA     +      +  +TG+ GK
Sbjct: 61  AAVVAQAEGEAEEGEIRELHGVPVIYLHRLQERLSALAGRFYQQPLHALRLTGVTGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY-----------ACIGSYNNHIGVPLTLARMPVDVDFG---IF 165
           TTT  +L      + +T              I   +N  G P+ + ++ + +        
Sbjct: 121 TTTTHLLAQWAQLLGETSAVMGTVGNGVLGHIHPADNTTGSPIEVQQLLLQLQRQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++    ++    AV T ++  HL     + +  +AK  +F  L+    I  
Sbjct: 181 AMEVSSHGLVQHRVSILHFAAAVFTNLSRDHLDYHGDMAQYEAAKWRLFGELDVGQRIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D +    L+    A+ +    +    +  D+      +   +             +VH
Sbjct: 241 ADDATGRRWLQKLPQAIAVAVSGTLPPERQGDWLCAGEVRYHARGADIPFRSSWGEGIVH 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      + L+      +       A+   +     +    R      +   T++ + 
Sbjct: 301 CQLIGEFNVSNLLLALTTLLALGYPLPALLDSASR--LQSICGRMEVFHAEDRPTVLVDY 358

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A        L+    H  G+   V G     G         L   ++      V 
Sbjct: 359 AHTPDA----LEKALTAARLHCHGKLWCVFG----CGGDRDKGKRPLMGAIAEQYADRVI 410

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +K  L  +                       D+V+V  K 
Sbjct: 411 ITDDNPRGEAAQDIINDIKSGLLDAGRAQVISGRAEAVTSAIMQAAPADLVLVAGKG 467


>gi|254232315|ref|ZP_04925642.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
 gi|124601374|gb|EAY60384.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis C]
          Length = 514

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 142/349 (40%), Gaps = 25/349 (7%)

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL 
Sbjct: 163 PPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLG 222

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E IA  KAE+ + +  +G + LN DD     +   + A  ++   S   + +   
Sbjct: 223 EFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRV--SRDNTGDVWA 280

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                ++  + +      +  S          H   N L    +     A V+    AL+
Sbjct: 281 GPVSLERIGQAALYAACPRCPSRGPDSGSAATHQVTNALCAAAVALECGASVEQVAAALT 340

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLG 376
              P      R +        T+ID++YNANP SM+A +  L+ I+  P    R  AVLG
Sbjct: 341 AAPPV--SRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLG 398

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------------HVLALKDAL 418
           +M E+GE + + H  +  +    ++S + + G                      A  D  
Sbjct: 399 EMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHG 458

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V+     D     +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 459 ADRTAVN-VADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 506



 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVP----QGFVNG-ISIDSRSIAPQEAFFAIKG 48
          M  L T   + + + G    I P       V G +  DSR+I P   F A+ G
Sbjct: 1  MIEL-TVAQIAEIVGGAVADISPLDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52


>gi|206971010|ref|ZP_03231961.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228954191|ref|ZP_04116219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|229071414|ref|ZP_04204636.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|206733782|gb|EDZ50953.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH1134]
 gi|228711705|gb|EEL63658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus F65185]
 gi|228805511|gb|EEM52102.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 491

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +       +               +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|262184484|ref|ZP_06043905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium aurimucosum ATCC 700975]
          Length = 517

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/484 (15%), Positives = 139/484 (28%), Gaps = 42/484 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T   L +   G  IG      V+   ++S ++ P   F A+ G    G  F    
Sbjct: 1   MTTSTTLKRLAEISGGTVIG-DASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADT 59

Query: 61  VQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
               A  ++ + +    +       P+  V+D+   L  ++         K TI+ +TG+
Sbjct: 60  E---AAAILTDAEGKRILNDAGEKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGT 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166
            GKTTT  +L   L     +   IG+    I        +       + E          
Sbjct: 117 SGKTTTSYLLEAGLLHAGYSVGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGV 176

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S            R  +   T ++  HL     +E+   AKA +F+G +    
Sbjct: 177 THVVMEVSSHALSLGRVQGTRFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADR 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD +   +  ++ A  +  + +  +  +AD   R+       +            
Sbjct: 237 SVICVDDEWGRRMAQRAAARPVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEH 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                    M     +               I+        E      R          +
Sbjct: 297 AGTFEFRLPMPGTFNIA-NAALATGMAASIGIEPQVFLEGVEKVAVPGRMERVDRGQDFV 355

Query: 343 DES-YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   PA++ A +  L        GR   V+G     G    S    L    +    
Sbjct: 356 AVVDYAHKPAAIAAVLETLRTQLEGSAGRIGIVVGA----GGDRDSSKRPLMGAAAAKGA 411

Query: 402 SHVWLSGFHVL------------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V ++  +              A       +  +    +       + +    GD V+V
Sbjct: 412 DLVVVTDDNPRTEDPASIRAAVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIV 471

Query: 450 --KS 451
             K 
Sbjct: 472 VGKG 475


>gi|227875251|ref|ZP_03993393.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269978140|ref|ZP_06185090.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|306818513|ref|ZP_07452236.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
 gi|227844156|gb|EEJ54323.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mobiluncus mulieris ATCC
           35243]
 gi|269933649|gb|EEZ90233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris 28-1]
 gi|304648686|gb|EFM45988.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mobiluncus mulieris ATCC 35239]
          Length = 516

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/475 (16%), Positives = 140/475 (29%), Gaps = 41/475 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A+ G   G  P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+
Sbjct: 25  IADAVGGTRHG--PAGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
            +   +  + +  +PV  V DV  A  + A  A         +  +TG+ GKTTT  +L 
Sbjct: 83  TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSH 171
             L  + K  A +G+    IG     + +                   ++  + E+    
Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG  R     +R  +A    +   HL     +E+    KA +F    ++    +  DD +
Sbjct: 203 LGLGRVD--PLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFT-ERRSDRQVIIVDDDW 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  +   +G     +   +             +                    +   
Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +   L IV ++T    +                 R                     
Sbjct: 320 RFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDFA 379

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            +  A  S+L  + P   GR   V G   +           +   ++       +L+   
Sbjct: 380 HNPGALKSLLETLRPSTAGRLRLVFGGTGQ----RDLEKRPILGRIAGELADFTYLTDDD 435

Query: 408 ------GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                 G     ++  L      +V  +                 D VV+     
Sbjct: 436 PHEEDPGKIRAEVRAGLEDFPGKYVEIAG-RSAAIKQAIQDAKPQDTVVIAG-RG 488


>gi|218233439|ref|YP_002368714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
 gi|218161396|gb|ACK61388.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus B4264]
          Length = 491

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +         E             +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
 gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase,
           putative [Ricinus communis]
          Length = 780

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 21/224 (9%)

Query: 5   WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            +  +LL    +   S+    +  + GI  DSR +   + F    G   DGH ++  A +
Sbjct: 243 MSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFVCCVGRRTDGHLYLSEADK 302

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           +GA  VV + ++          +  V+D    L  L+ A          +I I+G+ GKT
Sbjct: 303 RGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAFYKYPSKNMAVIGISGTNGKT 362

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGI 164
           TT  ++     ++        +   ++                 V   +A+M  +    +
Sbjct: 363 TTAYLIKGMYEAMGLRTGMFSTVAYYVHGDNKLESPNTTPDAVLVQNLMAKMLHNGTEAV 422

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             +  S  G        V   IAV T +   HL +F G EE   
Sbjct: 423 V-MEASSHGLASGRCDEVDFDIAVFTNLTGDHLDSFHGTEEEYR 465


>gi|288549342|ref|ZP_05966779.2| hypothetical protein ENTCAN_05119 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318746|gb|EFC57684.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterobacter cancerogenus ATCC 35316]
          Length = 471

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/451 (13%), Positives = 128/451 (28%), Gaps = 43/451 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           DSR  A  + F A+ G   DG  +I  A+ +G   V+      A+ G +     +PV  +
Sbjct: 4   DSRVAASGDLFVAVVGHQADGRRYIPQAIAQGVAAVIAEAKDEATDGEIREMHGVPVIYL 63

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
             +   L+ LA          +  +  +     T     +A  +               G
Sbjct: 64  SQLNERLSALAGRFYHEPSDQLRLVGVTGTNGKTTTTQLMAQWAQLLGETGAVMGTVGNG 123

Query: 149 VPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +   ++         +                  + +S  G ++     ++   +V T +
Sbjct: 124 LLGNVSPTENTTGSAVDVQHVLAGLAEQGASFAAMEVSSHGLVQHRVAALKFAASVFTNL 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +  HL     +E   +AK  ++        I    D+     L     A+ +        
Sbjct: 184 SRDHLDYHGDMEHYEAAKWLLYSTHHHGEAIVNADDEVGRRWLAKLPDAVAVSMEDHINP 243

Query: 253 SKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +  + +  + K     + + V       E+    +G     N+L+ L  +  L   + 
Sbjct: 244 NCHGRWLKAVEVKYHDRGATIRVASSWGEGEIESRLMGAFNVSNLLLALATLLALGYPMA 303

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             +K      P  GR + +              + +A           L     H  G+ 
Sbjct: 304 ELLKTAERLQPVCGRMEVFSAPGKPTVVVDYAHTPDA-------LEKALEAARLHCAGKL 356

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI 422
             V G     G         L   ++        ++  +            +   +  + 
Sbjct: 357 WCVFG----CGGDRDKGKRPLMGAIAEQFADIPVVTDDNPRTEEPRAIINDILAGMLDAG 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                E              + DVV++  K 
Sbjct: 413 RARVVEGRAEAVTNAIMQAQENDVVLLAGKG 443


>gi|30022003|ref|NP_833634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|229047599|ref|ZP_04193189.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|229129192|ref|ZP_04258165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|229146486|ref|ZP_04274857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|296504408|ref|YP_003666108.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
 gi|46576978|sp|Q819Q0|MURE_BACCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29897559|gb|AAP10835.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 14579]
 gi|228637119|gb|EEK93578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST24]
 gi|228654429|gb|EEL10294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-Cer4]
 gi|228723846|gb|EEL75201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH676]
 gi|296325460|gb|ADH08388.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus thuringiensis BMB171]
          Length = 491

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +         E             +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|32490960|ref|NP_871214.1| hypothetical protein WGLp211 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316006|sp|Q8D2Z1|MURE_WIGBR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|25166166|dbj|BAC24357.1| murE [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 496

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 70/462 (15%), Positives = 157/462 (33%), Gaps = 41/462 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG- 79
            + +  +N I ++S+ I   + F A+ G    G +FI  A++ G+ ++++ T  +   G 
Sbjct: 18  DISKIKLNSIKLNSKKIIKNDIFIALYGNCNHGKNFIFEAIKNGSSIILIETKNILKHGI 77

Query: 80  ---SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL---- 130
                +IP+    ++  +L++L+    L       +I ITG+ GKTT    +   L    
Sbjct: 78  IYFIKNIPIIYFYNLNYSLSELSGKFYLHPSRYMNVIGITGTNGKTTISHFIAKWLFLLG 137

Query: 131 ----------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                                +  N       L    +  +     + +S  G  +   +
Sbjct: 138 EKIGIIGTLGYGCLNKMKKSKNTTNSAIKCQKLLNFFLKKNINTVVMEVSSHGLHQNRVN 197

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A+ + ++  H+     + +   +K ++F  L     I    D      +K   +
Sbjct: 198 NINFFSAIFSNLSQDHIDYHKNMMQYEQSKWKLFSKLNVYKYIINYDDVIGKNWIKKIPN 257

Query: 241 A-LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + +      S  K KN    ++        + + +     S  +     G     N+L++
Sbjct: 258 SIIVSTKKNSIKKFKNLKMYVKDIFFHYFGTKLSISSSWGSCVINTKIFGEFNINNLLLS 317

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +  L  +  +            GR K +              + +A          V
Sbjct: 318 FVALLTLGYNFKSLANVAENLTMPNGRMKIFYVKKIPRVIVDYAHTPDA-------LEKV 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHV 411
           LS I  H +    ++ G     G+  +S    + ++  LY+I+ +  +            
Sbjct: 371 LSAIKLHFKKNIWSIFG---CGGDRDKSKRRVMGKICDLYSINIILTNDNPRSESETKIF 427

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +K  +     V+   + +    F   +  + D+V++  K 
Sbjct: 428 NDIKIGIKNLNKVNIIPSREHAIKFAIDNSNEKDIVLILGKG 469


>gi|238918673|ref|YP_002932187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella ictaluri 93-146]
 gi|238868241|gb|ACR67952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Edwardsiella ictaluri 93-146]
          Length = 469

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 69/452 (15%), Positives = 135/452 (29%), Gaps = 45/452 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           DSR  A  + F A+ G   DG  FI  A+ +G   V+   +  A  GS+     +PV  +
Sbjct: 2   DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61

Query: 89  DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS--------------- 131
           + +   L+ LA     +      ++ +TG+ GKTTT ++L                    
Sbjct: 62  NRLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNG 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +   Y    +  + + V   L  +  D    +  + +S  G ++     +    +  T 
Sbjct: 122 LLGHVYPSENTTGSAVDVQHMLRTLADDGATLVA-MEVSSHGLVQNRVLALPFAASAFTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A AK  +F        I    D+     L     A+ +       
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIVNADDEMGLLWLDKLPDAVAVTVTGVLP 240

Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           +     +            + +          +    +G     N+L+ L  +  L   +
Sbjct: 241 EGWAGRWLAACSVAYHDGGATIAFDSSWGEGTLNSRLMGEFNVSNLLVALATLLALGYPL 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A     P  GR + ++             + +A           L     H +G+
Sbjct: 301 AALCAASVQLQPVCGRMEVFQAPAKPTVVVDYAHTPDA-------LEKALLAARLHCQGQ 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421
              + G     G    +    L   ++      V ++  +            +   +   
Sbjct: 354 LWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDP 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                  DV++V  K 
Sbjct: 410 GLAMAIPGRAEAVTAAVMQAAPQDVILVAGKG 441


>gi|229092962|ref|ZP_04224094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
 gi|228690416|gb|EEL44201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-42]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETTIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|52141574|ref|YP_085255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51975043|gb|AAU16593.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +   +  +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGVSGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|229019118|ref|ZP_04175952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
 gi|229025361|ref|ZP_04181779.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228735946|gb|EEL86523.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1272]
 gi|228742134|gb|EEL92300.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH1273]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/477 (17%), Positives = 149/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   R     S  +   +    +++ V 
Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISH 403
            Y   P S++  +    Q +   +G    ++G     G         + A V + Y    
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGNVYCIVG----CGGDRDRTKRPIMASVAAEYATHA 402

Query: 404 VWLSG----FHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ S         A+ D +    + +  E             +   D D++++  K 
Sbjct: 403 IYTSDNPRSEDPKAILDDMVNGANGNNYEVIIDRKEAIHCAIAKAKDADIIIIAGKG 459


>gi|153809827|ref|ZP_01962495.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
 gi|149834005|gb|EDM89085.1| hypothetical protein RUMOBE_00208 [Ruminococcus obeum ATCC 29174]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 142/478 (29%), Gaps = 51/478 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++        +  V+ +  DSR +     F  I+G   DGH F+   ++KG
Sbjct: 1   MKVSTLLEGLKYICCQGSTEQEVSTVVYDSRKVEENSLFICIRGAVVDGHKFVPDVIRKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A                 + V  V D   A+  ++ A       K   I ITG+ GKTTT
Sbjct: 61  AK---TLVVEEEVEAPEDVTVIKVADTRYAMAFISAAYFGHPAEKLKTIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L +       IG+    IG              +     R  VD       + 
Sbjct: 118 TYMVKSILENAGYKVGLIGTIEAIIGEESIPACNTTPESYLVQEYFRKMVDAGCDCVVME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +   T        + T I P H+              +                
Sbjct: 178 VSSQGLMLHRTQGFVFDYGIFTNIEPDHIGP-----NEHKDFDDYLRCKSMLLQQCRVGI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVH 285
            +  +    +        + ++G S  AD +         + ++ +  Q        V  
Sbjct: 233 VNRDDEHFERIIEGHTCQLETYGFSPEADLRAEDAHMVGGKGYLGISYQLKGLMEFPVEI 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N L  + I        +  IKAL           R         FTL+ + 
Sbjct: 293 DIPGKFSIYNSLTAIAICRHFNVSQENIIKALK----VARVKGRIEVIKVSDEFTLMID- 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  N  ++++ ++ L +  PH       ++      G  ++S   ++ E +S        
Sbjct: 348 YAHNAMALESLLTTLREYHPHR------LVCLFGCGGNRAKSRRYEMGE-VSGRLADLTI 400

Query: 406 LSGFHVL--------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +                       Y E         +       GD++V+  K 
Sbjct: 401 ITSDNPRFEEPQDIIDDIKIGISKTDGKYVEICDRKEAIAYAIHHGEPGDIIVLAGKG 458


>gi|229180190|ref|ZP_04307534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
 gi|229192084|ref|ZP_04319053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228591410|gb|EEK49260.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 10876]
 gi|228603399|gb|EEK60876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 172560W]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHQTMEEYKHAKGLLFAQLGNSYNHNGE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +       +               +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|312880223|ref|ZP_07740023.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
 gi|310783514|gb|EFQ23912.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aminomonas paucivorans DSM 12260]
          Length = 507

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 141/457 (30%), Gaps = 43/457 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
              +++ +   S ++AP   F  + G   DGH F   A+ +GA  + V   +   +  + 
Sbjct: 25  DNPWIDRVVHHSGNVAPGSLFACVSGGKADGHRFAASALDRGAVALCVERALDLPVPQVV 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +P      V   + +LA         + T + ITG+ GK+TT  ML   L S       +
Sbjct: 85  VPD-----VRRFMGRLAAVLYGEPAQRLTHVGITGTNGKSTTTYMLRSVLQSAGVKTGLL 139

Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+   H G                 +     V    G   +  S  G  +      R   
Sbjct: 140 GTIVYHDGDKELEADRTTPENTDIQSFLARMVSNGCGACVMETSSHGLEQGRIEGCRFDR 199

Query: 187 AVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
              T ++P HL      E    AK     E ++ +     N DD++   L        + 
Sbjct: 200 GGFTNLSPEHLDYHGTEEAYFQAKKLLFEEYMKPSWKGASNRDDAYGRRLLEAYPENLVG 259

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                 +  +    L+ +        + +       EV    IG +  +N L    +   
Sbjct: 260 YTREEPRPGDLGATLKSFDLTGMCLDLTLPDGRVLPEVHLPLIGTYNVENALACAALART 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D +T  + L+      GR +RY              + +           VLS +  
Sbjct: 320 LDIDGETIRRGLASMPQVPGRLERYSLPGGVTCVIDYAHTPDG-------LEKVLSTLRH 372

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS 421
              G+  +V G     GE + S    L E         V            A+ + +   
Sbjct: 373 VCRGQLWSVFGH---GGERTTSHRKALGEHAGRLADRVVVTMDNPRSEDPGAIAEQIVGG 429

Query: 422 IHVHYSE-------TMDGLFLFIQSSLVDGDVVVVKS 451
           I    +               F       GDVV+V  
Sbjct: 430 IQGSGAATPWEVRLDRGEAIRFALDGAQPGDVVLVSG 466


>gi|229186155|ref|ZP_04313324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
 gi|228597331|gb|EEK54982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BGSC 6E1]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|254821906|ref|ZP_05226907.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium intracellulare ATCC 13950]
          Length = 514

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 155/478 (32%), Gaps = 51/478 (10%)

Query: 10  LLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           L   I     G   VP   V G+++ ++ + P + F A+ G    G  +   A+++GA  
Sbjct: 20  LAADIGAAPAGDRAVPNLPVTGVTLRAQEVRPGDLFAALPGSTTHGARYAGDAIERGAVA 79

Query: 68  VVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
           V+ +   VA +G+L   +PV    D  G L  LA           T++ +TG+ GKTTT 
Sbjct: 80  VLTDAGGVAEMGALGQSVPVLVHPDPRGVLGGLAATVYGNPSERVTVVGVTGTSGKTTTT 139

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
            ++  AL +   T   IG+    I                   +  A     VD  + E+
Sbjct: 140 YLIESALRAAGHTAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAAMAEQGVDTVVMEV 199

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH   +  +    R  +   T ++  HL     + +   AKA +F+         +  
Sbjct: 200 -SSHALTLGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKAMLFDPSSPLRARRVVV 257

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                      + A    T+ + G+  +              +         +      G
Sbjct: 258 CVDDDAGRAMAARAGDAITVSAEGRPAHW---RATDVAPMGAAGQRFTAIDPAGARHQLG 314

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      N+   L  ++IL A   +  +A +        G+       Q F  L+D ++ 
Sbjct: 315 VRLPGHYNVANCLVALAILDAVGVSPEQASTGLLQARVPGRMEEIDAGQDFLALVDYAHK 374

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                   A+  +       + R   V G     GE        +    +      V ++
Sbjct: 375 PG------ALRAVLTTLARPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVVVT 424

Query: 408 -----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                G    +++  +         +  +              +    GDVV++  K 
Sbjct: 425 DDNPRGEDPASIRREILAGATESGCAADIVEIADRRDAIRHAVAWAGPGDVVLIAGKG 482


>gi|196045834|ref|ZP_03113063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
 gi|196023274|gb|EDX61952.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB108]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|228960132|ref|ZP_04121796.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799648|gb|EEM46601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 145/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPNESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKDLAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +         E             +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEMIIDRKEAIHHAIAKAKADDIIIIAGKG 459


>gi|325519769|gb|EGC99074.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 131

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  + +     + I G ++          +S DSR++ P + F A+KG  +D HDF+   
Sbjct: 1   MT-MLSLDQAARLIPGATVHGDAGVTFERVSTDSRTVGPGDLFVALKGERFDAHDFLGDV 59

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                        +  +   L++P+    +   AL  LA   R R    ++A+TGS GKT
Sbjct: 60  A----ARGAAAALVAHAPAGLAMPLIVGGETRAALGALAHGWRKRFALPLVAVTGSNGKT 115

Query: 121 TTKEMLTIALSSI 133
           T KEM+    ++ 
Sbjct: 116 TVKEMIASIFAAA 128


>gi|229162850|ref|ZP_04290807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
 gi|228620732|gb|EEK77601.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus R309803]
          Length = 491

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDIMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETVIDVIKKLAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404

Query: 407 SGFHVLA-----LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +     + D + +  + +  E             S+    D++++  K 
Sbjct: 405 TSDNPRSEEPGTILDDMVQGANGNNYEVIIDRKEAIYHAISNAKAEDIIIIAGKG 459


>gi|309806975|ref|ZP_07700957.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166595|gb|EFO68792.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 270

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 10/238 (4%)

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E L         +   +FG +         +      +   +      ++     IG H 
Sbjct: 38  EPLLQARAQTLNQLQATFGFNSTDTIYATNFNSYMHHASFTI--NDSKVKFTIPMIGKHN 95

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +            +AL+ F P   R +  +  L +    ++ + YN+NP +
Sbjct: 96  VSNALAAILVGRTFGVPDVEIAQALANFVPTANRMQWEKGDLGEA---IMSDVYNSNPTA 152

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            KA ++  SQ+     GRRIAVLGDM E+G  S   H  LAEVL+   I  ++L G  + 
Sbjct: 153 AKAVLTSFSQVDVDAFGRRIAVLGDMLELGAASHQLHASLAEVLTPQLIDELYLYGPEMK 212

Query: 413 ALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            L +AL       ++H +  + MD +   ++  +   D+V++K S+     +++  LL
Sbjct: 213 YLFEALSGKYESSALHYYEKDHMDRMINDLREDIKPHDIVMLKGSHGMHLEKVLERLL 270


>gi|229104477|ref|ZP_04235144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
 gi|228678919|gb|EEL33129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock3-28]
          Length = 491

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 52/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D H+F        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G   ++D   +     S  +   +    +S++V 
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +    G    ++G     G         +   +++   +  
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402

Query: 405 WLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +  +          +KDA   +  V           +  S     D++++  K 
Sbjct: 403 IYTSDNPRSEDPVAILDDMIKDAKGNNYEVIV--DRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|222097360|ref|YP_002531417.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|221241418|gb|ACM14128.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus Q1]
 gi|324327814|gb|ADY23074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 491

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 146/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404

Query: 407 SGFHVL-----ALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +       +               ++    D++++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGKNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|228941003|ref|ZP_04103561.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973934|ref|ZP_04134509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980523|ref|ZP_04140833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228779343|gb|EEM27600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis Bt407]
 gi|228785800|gb|EEM33804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818682|gb|EEM64749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941684|gb|AEA17580.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 491

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 79/477 (16%), Positives = 147/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H LL  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLLSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V 
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +      +  E             + +   D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGNNYEVIIDRKEAIHHAITKVKADDIIIIAGKG 459


>gi|330892871|gb|EGH25532.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 101

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            TF +L+  +    +        +G+S DSR I P + F A+ GP +DGH+++     KG
Sbjct: 1   MTFSELVVPLDARLVAG--DCSFDGVSTDSRGIQPGQLFVALTGPRFDGHEYLEQVAAKG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           A   +V  ++  +    S+P   V D   AL +L    R   
Sbjct: 59  AVGALVEREVQGA----SLPQLVVIDTRKALAQLGAMNRNAF 96


>gi|229081167|ref|ZP_04213677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
 gi|228702211|gb|EEL54687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-2]
          Length = 491

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 146/477 (30%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +    L   R         +AV T +   HL     +EE   A        G        
Sbjct: 176 VSSHALDLGRVHGCDYD--VAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V+
Sbjct: 234 KYAVLNSDDNVTEEYMRSTAATVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVM 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    ++T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVKLETIIAVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHA 402

Query: 405 WLS-----GFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +       +               +     D++++  K 
Sbjct: 403 IYTSDNPRSEDPAAILDDMVHGASGKNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|229075671|ref|ZP_04208653.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
 gi|228707447|gb|EEL59638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus Rock4-18]
          Length = 491

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 152/479 (31%), Gaps = 52/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D H+F        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHNFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNRK 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G   ++D   +     S  +   +    +S++V 
Sbjct: 234 KYAVLNSDDPVTEEYMRSTAATVVTYGIDVSSDIMAKDIVMTSGGTTFTLVTPYESVDVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +    G    ++G     G         +   +++   +  
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---NGDVYCIVG----CGGDRDRTKRPVMASVAVEYATQA 402

Query: 405 WLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +  +          +KDA   +  V           +  S     D++++  K 
Sbjct: 403 IYTSDNPRSEDPVAILDDMIKDAKGNNYEVIV--DRKEAIRYAISKAKAEDIIIIAGKG 459


>gi|289758277|ref|ZP_06517655.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
 gi|289713841|gb|EFD77853.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis T85]
          Length = 364

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 139/349 (39%), Gaps = 26/349 (7%)

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             GS+NN +G P T+ R     D+ I E+   H G I  L  +  P I V+  +  AHL 
Sbjct: 14  PPGSFNNELGHPWTVLRATRRTDYLILEMAARHHGNIAALAEIAPPSIGVVLNVGTAHLG 73

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            F   E IA  KAE+ + +  +G + LN DD     +   + A  ++          A  
Sbjct: 74  EFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSRDNTGDVWAGP 133

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                      +      Q    EV     G H   N L    +     A V+    AL+
Sbjct: 134 VSLDELARPRFTLHAHDAQA---EVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALT 190

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLG 376
              P      R +        T+ID++YNANP SM+A +  L+ I+  P    R  AVLG
Sbjct: 191 AAPPV--SRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLG 248

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF------------------HVLALKDAL 418
           +M E+GE + + H  +  +    ++S + + G                      A  D  
Sbjct: 249 EMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHG 308

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                V+     D     +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 309 ADRTAVN-VADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 356


>gi|164688449|ref|ZP_02212477.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
 gi|164602862|gb|EDQ96327.1| hypothetical protein CLOBAR_02094 [Clostridium bartlettii DSM
           16795]
          Length = 248

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 90/236 (38%), Gaps = 13/236 (5%)

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           ++L           + +FG  K+       ++     +   V +  K  +     +G H 
Sbjct: 20  DMLATLKGKDLKYNLKTFGFEKDNTIYCVDFEMNDNDTIFNVMIDNKIEKFYIPTVGEHN 79

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N +  + +   L   +D     L      + R       +    +T+ID  YNA+  S
Sbjct: 80  IYNAMAAILVGKTLNLTLDEIRNGLETLEITKSRMD----VIKNDNYTVIDSVYNASVDS 135

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M+AA+ VL++         +A+LGD+ EMG  ++  H  + +  S  N   +   G    
Sbjct: 136 MRAALKVLNRYKTRR----VAILGDIFEMGSFAEEGHKQVGKDASE-NADVIIAIGKDAE 190

Query: 413 ALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
            +      +     +VH+  T +      ++ L  GD ++VK+S       ++  L
Sbjct: 191 FISKEALENNMNKDNVHHFATKEEAMENFKNILQKGDTILVKASRGMHLEEVVEFL 246


>gi|42783008|ref|NP_980255.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|229198026|ref|ZP_04324740.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
 gi|42738935|gb|AAS42863.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus ATCC 10987]
 gi|228585505|gb|EEK43609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus m1293]
          Length = 491

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 148/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +    + +  E             ++    D++++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|315651129|ref|ZP_07904161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
 gi|315486594|gb|EFU76944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Eubacterium saburreum DSM 3986]
          Length = 496

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 143/472 (30%), Gaps = 49/472 (10%)

Query: 10  LLQAIQG---HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
           L++   G     I        + +  +++++     F  IKG ++D HD I   V+ GA 
Sbjct: 3   LIENTDGLDIDIISGKFDDDFSDLVFNTKNVVKDCLFVCIKGRNFDTHDVIDEIVKLGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VVV      +I    I V  VD    AL +L+ A       K  II ITG+ GKTT+  
Sbjct: 63  AVVVER----NIKRDDICVIKVDSTRAALARLSAAYFGHPAKKMKIIGITGTKGKTTSSY 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR---------------MPVDVDFGIFELGM 169
           ML   L    K      +      +  +                  +    ++ + E+  
Sbjct: 119 MLKKLLEQNAKVGLIGTNGITVGDIHRSTLNTTPESYELQKTFKECLDAGCEYVVMEV-- 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +      ++ +I + T I+P H+      ++            ++     +N DD
Sbjct: 177 SSQAVMLKRIEGIKFYIGIFTNISPDHIGP-DEHKDFTEYLMYKSLFFKQCEKTVVNADD 235

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +  +S +         G     +      K     S+     +    +     +G
Sbjct: 236 EHSAYILEQSTSDEKYEFGKCGDFVINNINYISKKDFLGTSFCISCSKNVKDKYRVSEVG 295

Query: 290 Y-----HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N+   L  +S             +     +  G+      +     +ID 
Sbjct: 296 DILVGIPGEFNVYNALSALSAAIICRVKPAVLQTALKDIKVNGRMEVAYSSHDIKIIIDY 355

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++NA          ++  +  +   R + V G     G  S+     + E+        V
Sbjct: 356 AHNAISTES-----LIKTLRRYEPKRLVVVFGS---GGNRSKDRRYSMGEICGKMADFSV 407

Query: 405 WLSG--------FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +           +  + + L                  +   +   GD++
Sbjct: 408 VTADNSRYEKTEDIIADIVEKLSETGGKYITVPDRKEAIFYAMENSKPGDII 459


>gi|228987059|ref|ZP_04147184.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228772653|gb|EEM21094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
          Length = 491

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +++ A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +    + +  E             ++    D+V++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459


>gi|118479134|ref|YP_896285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
 gi|118418359|gb|ABK86778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis str. Al Hakam]
          Length = 491

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    +    E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|83748761|ref|ZP_00945776.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|207744406|ref|YP_002260798.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724582|gb|EAP71745.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum UW551]
 gi|206595811|emb|CAQ62738.1| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase
           (udp-n-acetylmuramyl-tripeptide synthetase)
           (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 514

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 142/481 (29%), Gaps = 55/481 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G      DG   I  A++ GA
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKVGDVFVAYVLGNVRQRGDGRPHIPQAIEAGA 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+             + +  VD +      LA              I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPADAPVRILPVDGLAELAGPLAAQWYAVPGPDALRAIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +  ALS   +  A +G+     G   TL          I                  
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDTLVATGFTTPDAIQLQRSLADLHRAGARAVA 190

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +      R  IA+ T +   HL     + E   AKA +F        +   
Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            D +   LL      +        G+           +    +     +  +V       
Sbjct: 251 DDAAGVRLLTGLRADIEAVEYGIDGEAAAQRGAKHWLRATSVRAHRTGTTFDVDGSFGRA 310

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N L  LG++ +       AI  L    P  GR +R+           
Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++  +  L+ I+    G+  AV G     G             ++    
Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            HV L+  +  +         + D +         E      L         DVVVV  K
Sbjct: 423 QHVVLTSDNPRSEDPQQILDMIADGMEDPYVAVQIEDRAAAILHAVRHADAHDVVVVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|296129438|ref|YP_003636688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
 gi|296021253|gb|ADG74489.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas flavigena
           DSM 20109]
          Length = 520

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 85/482 (17%), Positives = 148/482 (30%), Gaps = 42/482 (8%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           P+    DL   +   ++G         G+++ S  + P + F A+ G    G  F   AV
Sbjct: 14  PVRRVEDLAADLDLVTVGAPAAGLTFTGVTMSSTDVEPGDLFVAVPGLKVHGARFAADAV 73

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI--TGSVGK 119
            +GA  V+ + D VA++    +PV    D       +A  A     + ++ +  TG+ GK
Sbjct: 74  ARGAVAVLTDDDGVAAVPP-DVPVLVAHDPRSLAGPVASWALGNPASRLVTVGVTGTNGK 132

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFEL 167
           TTT   +  AL +     A +G+    IG             P+  A + V  + G   L
Sbjct: 133 TTTTYFVDAALRAHHARTAVLGTVELRIGDDAVESPRTTVEAPVLQALLAVAHERGAGAL 192

Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S            R  +   T +   HL     +E     KA +    E+     +
Sbjct: 193 TTEVSSHALALGRVLGTRFDVVGFTNLQRDHLDFHGDMEGYFRDKARL-FAPEQARRGVV 251

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWMEVQLQGKSME 282
             DD++   L  ++           G  + A       +            V        
Sbjct: 252 VVDDAWGRRLAEEAAIPVETVSTHVGAPEAAGATWAVVEADVGLDGVGSRFVLRGPDGAR 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            V H     +       L IV    A V  A    +V       G+  R       + L 
Sbjct: 312 HVAHSPLPGLVNVSNAALAIVLAHAAGVPLATAIEAVGGAHAIPGRMERVVERGDGWPLC 371

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P ++  A+     + P   GR + V G               +   ++     
Sbjct: 372 LVDYAHTPDALVLALEA---VRPITPGRLVIVFGSDG----DRDRGKRPIMGEIAARLAD 424

Query: 403 HVWLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + ++  +  +             ++D  P    VH + +               D V+V
Sbjct: 425 VLVVTDENPRSEDPASVRAAILAGVRDVRPDLADVHEATSRAQAIRDALRLAGPDDTVIV 484

Query: 450 KS 451
             
Sbjct: 485 TG 486


>gi|269137990|ref|YP_003294690.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|267983650|gb|ACY83479.1| UDP-N-acetylmuramyl tripeptide synthase [Edwardsiella tarda EIB202]
 gi|304558037|gb|ADM40701.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Edwardsiella tarda FL6-60]
          Length = 469

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 136/452 (30%), Gaps = 45/452 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGV 88
           DSR  A  + F A+ G   DG  FI  A+ +G   V+   +  A  GS+     +PV  +
Sbjct: 2   DSRVAAAGDLFVAVVGHAADGRRFIPQAIAQGVAAVIAEAEGEAEDGSVRELHGVPVVYL 61

Query: 89  DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS--------------- 131
             +   L+ LA     +      ++ +TG+ GKTTT ++L                    
Sbjct: 62  SHLNERLSALAGRFYGQPGADLRLVGVTGTNGKTTTTQLLAQWAQLLGETGAVMGTVGNG 121

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +   Y    +  + + V   L  +  D    +  + +S  G ++     +    +  T 
Sbjct: 122 LLGHVYPSENTTGSAVDVQHMLRTLADDGATLVA-MEVSSHGLVQNRVLALPFAASAFTN 180

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +E  A AK  +F        I    D++    L     A+ +    +  
Sbjct: 181 LSRDHLDYHGDMEHYAQAKWRLFSTHHSGEKIINADDETGRRWLDKLPDAVAVTVSGALP 240

Query: 252 KSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 +   R        + +       +  +    +G     N+L+ L  +  L   +
Sbjct: 241 AGWAGRWLAARSVAYHDGGATIAFDSCWGAGTLNSRLMGEFNVSNLLVALATLLALGYPL 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                A     P  GR + ++             + +A           L     H +G 
Sbjct: 301 AALCAASGQLQPVCGRMEVFQAPGKPTVVVDYAHTPDA-------LEKALLAARLHCQGL 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRS 421
              + G     G    +    L   ++      V ++  +            +   +   
Sbjct: 354 LWCLFG----CGGDRDTGKRPLMGAIAEQYADRVVVTDDNPRSEEPRAIINEILSGMLDP 409

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                  DV++V  K 
Sbjct: 410 GLAMAIPGRAEAVTAAVMQAAPQDVILVAGKG 441


>gi|154508811|ref|ZP_02044453.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798445|gb|EDN80865.1| hypothetical protein ACTODO_01320 [Actinomyces odontolyticus ATCC
           17982]
          Length = 526

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 81/475 (17%), Positives = 147/475 (30%), Gaps = 48/475 (10%)

Query: 13  AIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           A  G    I      + GI++ S        F AI G    G  F   A++ GA +V+ +
Sbjct: 30  AADGQLAQIAESPLSLRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89

Query: 72  TDMVAS--IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
            D  A      L +PV  V D    + +L          + T +A+TG+ GKTTT  ++ 
Sbjct: 90  EDGRAQAFERGLGVPVIQVADPRAIVPQLCANIYASPATRLTTMAVTGTNGKTTTSYLMR 149

Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
            A++S     +  G+   H+G                     A    +   G+ EL    
Sbjct: 150 AAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHA 209

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R    +    +A  T +   HL  +  +E    AKA +F   E +    +  DD +
Sbjct: 210 LSLHRVDGIV--FDVAAFTNLQHDHLDYYGDMENYFQAKALLFT-PEHSRHGVVCVDDEW 266

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290
              L  ++            ++ +   +     Q   ++   +         V    +G 
Sbjct: 267 GRRLAQQATVPVTTVSALTEEAADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGE 326

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              QN  + +     L  D+   I A+       GR ++           ++D ++    
Sbjct: 327 VNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEA 386

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L        GR + V G          +   +    ++      +W++  +
Sbjct: 387 LEW-----TLRSTRELTSGRVVIVFGTDG----DRDATKREHLAQIAAREADVLWVTDEN 437

Query: 411 VLA-------------LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKS 451
                           +    P    V    T           +   GD V++  
Sbjct: 438 PRTEVPQEIRNYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITG 492


>gi|47565786|ref|ZP_00236825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
 gi|47557066|gb|EAL15395.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus G9241]
          Length = 491

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFDVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +++ A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +    + +  E             ++    D+V++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459


>gi|167768013|ref|ZP_02440066.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|317498393|ref|ZP_07956688.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167710342|gb|EDS20921.1| hypothetical protein CLOSS21_02556 [Clostridium sp. SS2/1]
 gi|291561015|emb|CBL39815.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SSC/2]
 gi|316894287|gb|EFV16474.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 485

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 79/472 (16%), Positives = 151/472 (31%), Gaps = 43/472 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+  +   +       ++ +  DSR I     F  I G  +DGH F+  A + GA 
Sbjct: 3   LKELLERSEYTLVQGSEDVEISTLVYDSRKIEKGSVFVCISGAAFDGHKFVAQAAELGAA 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
            VVV  D+       ++ V   D+   AL +++ A       + T I ITG+ GKTTT  
Sbjct: 63  AVVVEKDVEV---PENLTVIKFDNTRLALAEMSAAYFGYPAEELTTIGITGTKGKTTTTY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           M+   L    +    IG+    IG     +       + + E              + +S
Sbjct: 120 MIRAVLEHAGQKTGLIGTIETIIGDERIPSVNTTPESYIVQESFRKMADAGLKNVVMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +   T        + T +A  H+      E       +                 +
Sbjct: 180 SQALMLHRTSGFEFDYGIFTNLAEDHIG-----ENEHKDMDDYIHCKSLLFKQCKQGIVN 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +    +        I ++G     D       +  E  ++ V    K  +  +  +  
Sbjct: 235 GDDDYVERIIKDHTCAIETYGMKDTNDVYAENITRIQEPGYLGVAYDLKGKQEYNVHVDI 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                +  +L  +S+           LS  +  + +G+         +  +ID ++NA  
Sbjct: 295 PGDFTVYNSLAAISLCRHMGIVKEDVLSALNTIQVKGRLEIIKTPGDYTLMIDYAHNA-- 352

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
               +  S+L+ I  +   +   + G     G  +++   ++ EV S      V  S   
Sbjct: 353 ---MSLESLLTTIRKYNPKKIYCLFG---CGGNRAKARRYEMGEVSSKLADLTVVTSDNP 406

Query: 409 ---FHVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +  + D L                     +       GD+V++  K 
Sbjct: 407 RNEEPMDIINDILIGVHKADGEYVTIPDRKEAIKYCMEHAGAGDIVILAGKG 458


>gi|187930162|ref|YP_001900649.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12J]
 gi|187727052|gb|ACD28217.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12J]
          Length = 514

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 137/461 (29%), Gaps = 49/461 (10%)

Query: 30  ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+      A      + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNARQRGDGRPHIPQAIEAGASAVLAEAHGYAMPADAPVRI 92

Query: 86  FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD +      LA             +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186
                G    LA         I                  + +S  G  +      R  I
Sbjct: 153 LGT--GFVDALATTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTRFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F        +    D +   LL+     +    
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWQGLRAAVINRDDAAGVRLLQNARADVETIE 270

Query: 247 IYSFG-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               G            +    +     +  +V        V    +G     N+L  LG
Sbjct: 271 YGIDGDAAAQHGARQWLRATNVRAHRTGTTFDVDGSFGRATVHVSTVGLFNVSNLLAVLG 330

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +         AI  L    P  GR +R+               Y   P +++  +  L+
Sbjct: 331 ALLAAGVSWQDAIARLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            I+    G+  AV G     G             ++     HV L+  +           
Sbjct: 387 PITEARGGKLWAVFG----CGGDRDPGKRPQMGSIAERLAPHVVLTSDNPRSEDPQHILD 442

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + D +         E      L         DV+VV  K 
Sbjct: 443 EIADGMDNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|237734783|ref|ZP_04565264.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mollicutes bacterium D7]
 gi|229382111|gb|EEO32202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Coprobacillus sp. D7]
          Length = 458

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 77/448 (17%), Positives = 151/448 (33%), Gaps = 54/448 (12%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            +SR++ P + F AI     DGHD+I  A+  GA  ++         GS  +    V+  
Sbjct: 7   TNSRAVKPGDTFIAIPNVARDGHDYIEEAIANGATKIIAEH------GSYKVETIIVEST 60

Query: 92  LGAL-NKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG- 148
              L   L        K   +I +TG+ GKTTT  M    L  +KK  A +G+   + G 
Sbjct: 61  REYLKTYLYENYYPLIKDIKLIGLTGTNGKTTTCLMTYQILKMLKKNVAYMGTIGFYYGD 120

Query: 149 ---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                            + L      V++ + E+  SH  +     H +       T + 
Sbjct: 121 AKKPMVNTTPDVDVLYNMLLEAKENGVEYFVMEV-SSHALDKDR-IHGLEFDEVAFTNLT 178

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +E  A+AK  +F          +N DD  ++    +               
Sbjct: 179 QDHLDYHKTLENYANAKRILFTKTRNDKIAIINGDDEHYQHFVLE------SNNNIIIGQ 232

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            ++D ++ +       +  + +      +   + +G +   N L+ L +V+ L   ++  
Sbjct: 233 HDSDVKILEMSFSHLGTIFKFEYLNHEYQARLNMVGRYNIYNYLIALLLVNKLGVKIEDI 292

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +          GR +  +   N  F       Y   P ++   +    +      GR I 
Sbjct: 293 LALNDKLKAPAGRMELLKYGTNSIFV-----DYAHTPDAVINVLKSAEEFK---NGRIIT 344

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSE 428
           ++G     G    +    +    +L +  +V  +  +  +     + D +   +     E
Sbjct: 345 IIG----CGGDRDATKRPIMGKAALEHSDYVIFTSDNPRSEDPQMILDDITNGLSGSNFE 400

Query: 429 ---TMDGLFLFIQSSLVDGDVVVV--KS 451
                    +     L   D++++  K 
Sbjct: 401 IEVDRQKAIIKGMQQLKHNDILMILGKG 428


>gi|294508378|ref|YP_003572436.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
 gi|294344706|emb|CBH25484.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salinibacter ruber M8]
          Length = 543

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 149/350 (42%), Gaps = 16/350 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGI 164
           S  +++ ITGS GKT+TK ++   L      YA   SYN  +G+ L +   +  +    +
Sbjct: 192 SDLSVVGITGSYGKTSTKFIVAELLRQKYNVYATPSSYNTPMGLCLAVNEHLKPEHQVLV 251

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G+ + G++  L  +  P  +V+TTI  AHL      + IA+ K  + E     G   
Sbjct: 252 LEYGIRYPGDMDELCDIAEPDASVVTTIGVAHLETMGSQDHIAAEKGVLVERTAPDGPAV 311

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEV 283
           LN DD     +  +  A G     S     +AD      +  +  + +      G ++  
Sbjct: 312 LNVDDERVAAMAER--AAGPVWRISTEGHPDADITASDIRYDTGGTAFNVTDDTGTTVTF 369

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H   N+L+ + +   +   +     A+    P E R +      ++G  T+ID
Sbjct: 370 ETQLLGRHNVLNVLLAVAVGRSMGLRLRQMAHAVRRVEPIEHRLQ----LRSRGDVTIID 425

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP       + +  +S    G+R+ V   M E+G+   + + D   VL+ +++  
Sbjct: 426 DAFNSNPVGA---RNAVEILSEMDGGKRVIVTPGMVELGDRQWTENKDFGVVLAQHDLDL 482

Query: 404 VWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V L G    A     L +    +  +   +++      ++  L  GDVV+
Sbjct: 483 VVLVGEEQTAPIQAGLSEGGAPAERIMVVDSLAEAQEILERRLGPGDVVL 532


>gi|293192792|ref|ZP_06609687.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
 gi|292820039|gb|EFF79037.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces odontolyticus F0309]
          Length = 526

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 82/475 (17%), Positives = 151/475 (31%), Gaps = 48/475 (10%)

Query: 13  AIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
           A  G    I      + GI++ S        F AI G    G  F   A++ GA +V+ +
Sbjct: 30  AADGQLAQIAESPLSLRGITVSSDDCESDWLFVAIPGLKQHGIRFAHAAIEAGASVVLTD 89

Query: 72  TDMVAS--IGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT 127
            D  A      L +PV  V D    + +L         ++ T +A+TG+ GKTTT  ++ 
Sbjct: 90  EDGRAQAFERGLGVPVIQVADPRAIVPQLCANIYAFPATRLTTMAVTGTNGKTTTSYLMR 149

Query: 128 IALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSH 171
            A++S     +  G+   H+G                     A    +   G+ EL    
Sbjct: 150 AAIASRFPNASLCGTVETHVGPISFEAVRTTAEAPVVARFLAATEQYECGAGVIELSAHA 209

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R    +    +A  T +   HL  +  +E    AKA +F   E +    +  DD +
Sbjct: 210 LSLHRVDGIV--FDVAAFTNLQHDHLDYYGDMENYFQAKALLFT-PEHSRHGVVCVDDEW 266

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGY 290
              L  ++            ++ +   +     Q   ++   +         V    +G 
Sbjct: 267 GRRLAQQATVPVTTVSALTEETADWQVRDVTPDQTIGRTVFTLVDPSGTGHRVAMPILGE 326

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              QN  + +     L  D+   I A+       GR ++           ++D ++    
Sbjct: 327 VNIQNTAVAIVSAVSLGIDLADVISAIEDAPQIPGRMEKVNPTPGGQPLVIVDYAHTPEA 386

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L        GR + V G          +   +    ++      +W++  +
Sbjct: 387 LEW-----TLRSTRELTSGRVVVVFGTDG----DRDATKREHLAQIAAREADVLWVTDEN 437

Query: 411 VL-----ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   ++D L R I             +            +   GD V++  
Sbjct: 438 PRTEVPQEIRDYLLRGIASVRPGMEDVTEVTTCRRDAVRRAILAAEPGDTVIITG 492


>gi|225865896|ref|YP_002751274.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
 gi|225787861|gb|ACO28078.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus 03BB102]
          Length = 491

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIGTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    +    E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGDNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|187918074|ref|YP_001883637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
 gi|119860922|gb|AAX16717.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia hermsii DAH]
          Length = 514

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 161/477 (33%), Gaps = 49/477 (10%)

Query: 7   FHDLLQAIQ---GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            +++L  +       +    +  + G++ DSR +  +  FFA+ G H+DG  FI  A+Q+
Sbjct: 14  LNNILSKLDKNMIKEVRGSCEVEILGLTYDSRCVLSRFVFFALPGLHFDGQKFIESAIQQ 73

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G+ ++V   D+ +   +++       ++   ++  +         K  II +TG+ GK++
Sbjct: 74  GSNVIVHTNDIDSYDPNVTYIKIDACNIKRFMSNFSHIFYDEPSKKLKIIGVTGTDGKSS 133

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-------------------VDVDF 162
               +   L S+      I +     G    +                        +V++
Sbjct: 134 VCFYIYTLLKSMGVKVGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEY 193

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E     L         +   +AV+T I+  HL     ++   +AK  +F   +  G 
Sbjct: 194 AIVESTSHGLDARTSRLIDISYSVAVLTNISHEHLEFHGTMQHYLNAKLNLFSSADANG- 252

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   +       +      ++KNADF + K  +       E   +    +
Sbjct: 253 --GFGIVNMDDNNFSVFLNAINRVYTYSLENKNADFFVSKINEQMGFIEFEFYHKDVKYD 310

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G    +N++  L +VS +     + +  +      EG   R +       F+LI
Sbjct: 311 ARVNLTGSFNVENVMAALIVVSQVMNIHISEL--IEKLVNVEGLCGRMQGVDFGQDFSLI 368

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +   A     + +        + R I+V G   E      +F   L   ++     
Sbjct: 369 IDYAHTPGA----FLKIFPMFKRLAKNRLISVFGSAGE----RDTFKRKLQGEIADRYSD 420

Query: 403 HVWLSGFH---------VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L             +  + + +     +  + +                 GD+V
Sbjct: 421 IIILCDEDPRSEDSMQIIRDIAEGISGKTLNKDLFFIPDRRSAIEKAVDIAYAGDLV 477


>gi|228935230|ref|ZP_04098056.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824395|gb|EEM70201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 491

 Score =  111 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|154249142|ref|YP_001409967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153078|gb|ABS60310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fervidobacterium nodosum
           Rt17-B1]
          Length = 497

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 152/456 (33%), Gaps = 45/456 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  IS +S ++     F   KG  +D H        +G  + +V  + +    +  +
Sbjct: 25  DKDIEHISNNSNNLKENTLFICRKGSKFDSHTIAERLYNEGMVIALVTEEEI----NTKL 80

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK-KTYACI 140
           P   V D   A   LA               +TG+ GKTT   +    +           
Sbjct: 81  PHVQVYDSRLAEAYLAAEFYSHPYQHLITFGVTGTNGKTTCAHLFHHIMQQFGLNGSLSG 140

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-------------LVRPHIA 187
              N+ +G    +     D    +  +  +H     + +               +R  IA
Sbjct: 141 TVLNDILGDKFYVHNTTPDAITIMDNMSKTHKNGGSYYSMEVSSHSLDQGRVETIRFDIA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +T I   HL      E   ++K  +F+ L+K G   +N      E      +   +  +
Sbjct: 201 GLTNITRDHLDYHPTFEHYVNSKLHLFDLLKKDGIAVIN------EEYVQLLNGKKVPNL 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +FG ++NA +++         +   ++    + +V    IG + A N+ + L  +  + 
Sbjct: 255 VTFGVNENAQYKISDITTGWNGTNFILRTPYGTKKVYTQMIGEYNAFNVTLVLAGLVEIG 314

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            ++D  I  +S F   +GR +    A   G   +ID +++ +         V+S      
Sbjct: 315 YEIDEVISYISSFRGVDGRFEPIPEARRLGIEVVIDFAHSPDALE-----KVISSARKLA 369

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSI 422
           +GR I V G     G  +      +   +         L+     G +   + + + + +
Sbjct: 370 KGRVIVVYGA----GGQADKGKRPMMAEVVTRLADIAILTTDDPRGENPEEIINEVEKGV 425

Query: 423 HVHYSE----TMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +                 +    GDVV++     
Sbjct: 426 RPNSLSLTVLDRKEAIDTAITLANRGDVVLITG-RG 460


>gi|85373181|ref|YP_457243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter litoralis HTCC2594]
 gi|84786264|gb|ABC62446.1| UDP-N-acetylmuramyl tripeptide synthase [Erythrobacter litoralis
           HTCC2594]
          Length = 495

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 82/470 (17%), Positives = 147/470 (31%), Gaps = 38/470 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L +A      G      V+G +ID R +AP   F A +G   +G D+I  AV   
Sbjct: 1   MKLARLAEAAGIAIEGG-EDIAVSGFAIDHRKVAPGTVFGAFQGSAVNGEDYISQAV--- 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                V                  D    A   LA         TI+A+TG+ GKT+T E
Sbjct: 57  -AAGAVAVVAQPEATVEGAVHIAEDTPRRAFALLAAQYFTPVPKTIVAVTGTNGKTSTVE 115

Query: 125 MLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMS 170
           M                          + +      +   L+ M      G+  +    S
Sbjct: 116 MTRQLWRMAGERAASIGTLGVTTPDESVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEAS 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  ++    +    A  T  +  HL     ++E   AK  +F+ +   G   + +  +
Sbjct: 176 SHGLSQYRNEGLPVAAAAFTNFSRDHLDYHGTMDEYFEAKMRLFDEVVDAGGTAVVWTGN 235

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +A   A   +        +  D +LR          +E++  G++ ++    IG 
Sbjct: 236 SEWTAQAIERARQRELRLFTVGEQGEDIRLRARTPTQLGQELEIEHAGETRKLRLPLIGE 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           +   N L   G+      D       +S   P  GR          G    +D ++  + 
Sbjct: 296 YQVANALTAAGLAIATGTDPAAVWDGVSRLQPVRGR-LERAVITATGAPVYVDYAHTPDA 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
                  + L+ + PH EGR + + G     G    +        ++      V ++   
Sbjct: 355 -----LEAALAALRPHVEGRLLCIFGA----GGDRDTGKRAPMGEVASRMADAVIVTDDN 405

Query: 408 --GFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             G    A++  +      +             +  S    D+V++  K 
Sbjct: 406 PRGEDPAAIRGQVLEGAGDNAREMADRREAIREVIESAAAKDIVLIAGKG 455


>gi|291278994|ref|YP_003495829.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
 gi|290753696|dbj|BAI80073.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Deferribacter desulfuricans SSM1]
          Length = 480

 Score =  111 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 150/455 (32%), Gaps = 53/455 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV-QKGAGLVVVNTDMVASIGSLSIP 84
            V  IS D+R I     F A KG  YD H+ I   +      ++V   +          P
Sbjct: 23  EVADISFDNRDIKENSIFVAYKGVSYDTHNDINKLINDSRIKVLVTEKEF-------DFP 75

Query: 85  VFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
              V +   AL+ ++        +   I +TG+ GKTTT  ++   +       A  G+ 
Sbjct: 76  TIVVKNGRRALSIISKNFFIKNYEPNYIGVTGTNGKTTTAYLINHIVEFTGYKTARFGTI 135

Query: 144 NNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           N  I   L  +                    + +F + E+  SH  +   +  +   + A
Sbjct: 136 NYKIDKELYPSTTTTPSTYEFYKMLGVAEKANCEFVVMEV-SSHALDQDRVYGIN-FNYA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T ++  HL     +++  ++K+++F        I    D+   +LL         + +
Sbjct: 194 IYTNLSGDHLDYHKDLDDYFNSKSKLFTEYLNGCGIVNIDDEYGKKLL---YLIKDNEIL 250

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +  A+  +  +    +++ + + L G+ +      +G H   N++  +     L 
Sbjct: 251 TYSFNNNKANCFVEHFDMNLDKTDIVLNLLGEKIHFETSLVGKHNIYNLMAAILTAHHLG 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D D   +A+  F    GR       +    +  ID ++  +        +VLS + P  
Sbjct: 311 IDHDRITRAIKTFSNVPGR---LEKLIYNNIYIFIDYAHTDDALE-----NVLSSLRPFR 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
           + R I + G     G             ++      V ++  +            +    
Sbjct: 363 KRRIITLFG----CGGDRDKSKRPRMAKVAEKYSDLVMVTSDNPRNEDPEKIIDGILKGF 418

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                V                    D+V++  K 
Sbjct: 419 GDKSKVVVEPDRREAIKLALKEAEPEDIVLIAGKG 453


>gi|301055405|ref|YP_003793616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus anthracis CI]
 gi|300377574|gb|ADK06478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bacillus cereus biovar anthracis str. CI]
          Length = 491

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVSKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|229157493|ref|ZP_04285570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
 gi|228625943|gb|EEK82693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus ATCC 4342]
          Length = 491

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 77/475 (16%), Positives = 149/475 (31%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERSIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +++ A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDVVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +    + +  E             ++    D+V++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGANGNNYEVIIDRKEAIYHAIANAKAEDIVIIAGKG 459


>gi|269468987|gb|EEZ80560.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured SUP05 cluster
           bacterium]
          Length = 495

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 159/482 (32%), Gaps = 65/482 (13%)

Query: 2   NPLWTFH------DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
            PL+T +      ++ Q +            +NG+ +++ +    + F A++G    G +
Sbjct: 22  KPLFTINLYNERMNITQLL-ADITPTKIDLEINGLCLNTHNAQTGDLFIALQGETTHGIN 80

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAIT 114
            I  A++KG   V+V++  +      +IPV  ++++   L  LA A   + +K  +I +T
Sbjct: 81  HIERAIEKGCVAVLVDSHDLE----CAIPVIRIENLKQYLPALASAYYSQATKVEVIGVT 136

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLT-------LARMPVDV 160
           G+ GKT+    ++  LS +      I           +    P               ++
Sbjct: 137 GTNGKTSVGYFISQMLSELGIKNGFIGTLGISNSDVASANTTPDIFTLYKALHQYHLDNI 196

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+  S  G  +     +    A+ T +   HL     ++E    K ++F      
Sbjct: 197 NTAVLEV--SSHGLDQNRVAGLNFKQAIFTNLTQDHLDYHQTLDEYRQVKLKLFSFDSIQ 254

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             I    D    + L A           S GK +         K    +     QL    
Sbjct: 255 SVIINQDDAYHQDFLDA-----------SKGKKQTTYSIKDFEKITINEQGFLCQLDNFV 303

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+     G     N+L     V  L    +  I  LS   P  GR ++ + AL    + 
Sbjct: 304 FEIPLL--GKFNLSNVLAAFNSVEQLGFSREGIIPLLSRLFPPLGRMQKIKKALAWVDYA 361

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              ++      ++K           H E +   V G     G             ++   
Sbjct: 362 HTPDALANAITTLKE---------HHPEHKIRIVFG----CGGNRDKSKRAKMGKIASKL 408

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              + L+  +            +   +  S  +  +           ++L +G+ +++  
Sbjct: 409 ADTIVLTNDNPRKEDPQAIINDILSGIDDSFELDITLDRQLAIETAITTLNEGECLLIAG 468

Query: 450 KS 451
           K 
Sbjct: 469 KG 470


>gi|262377040|ref|ZP_06070266.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
 gi|262308078|gb|EEY89215.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter lwoffii
           SH145]
          Length = 498

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 78/483 (16%), Positives = 159/483 (32%), Gaps = 65/483 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILH 59
           L+T HD+   ++             G  +DSR + P + F A+    +        F   
Sbjct: 8   LYTPHDVADWMK---------QSFQGFELDSRKVKPGQIFIALTSLSQPEKT--VQFAQK 56

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITG 115
           A+++GA  V+  T+   S      P   V DV   + +        ++      I+A+TG
Sbjct: 57  ALEQGALAVISETEPDVS------PNLVVSDVRHLMGQWQKQYLQATQPVTAARILAVTG 110

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFG 163
           + GKTT   ++   +  ++     +     +  +P              L          
Sbjct: 111 TNGKTTISRLVAEFIM-LQGKACAVMGTTGNGILPNLEASSHTTLDALQLQNALHGYAQA 169

Query: 164 IFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             E   +  S  G  +   +     IA  + ++  HL     ++  A AK+ +F      
Sbjct: 170 GAEFASIEASSHGLEQGRLNGCDIEIAGYSNLSRDHLDYHGTLQAYAEAKSGLFRFESLK 229

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             +    D+    +L A  +      I ++  ++ AD+Q++  +     +  +++     
Sbjct: 230 VAVINIDDEHAQIMLDAAKNNPAQPKILTYSTTQKADYQVQDIQYSISGATFKLKTASAE 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V    +G+   +N++ +L +      ++++ I  +       GR       L  G   
Sbjct: 290 YIVNSPLLGHFNIENLVASLIMAEQAGFELESLIATVPQLKGAPGRM----QVLRDGERL 345

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +  +   A       VL  +  H      AV G     G         L    +L  
Sbjct: 346 FVVDYAHTPDA----LTQVLVTLKRHVSQNLWAVFG----CGGDRDRGKRPLMTQAALDG 397

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV- 449
                L+  +            +K+ +  S   ++          F       GD+VV+ 
Sbjct: 398 SDIAVLTSDNPRTEDPAQIFADMKNGIDFSGKTYHEIHDRREAIKFAVKHAQAGDIVVIA 457

Query: 450 -KS 451
            K 
Sbjct: 458 GKG 460


>gi|209884377|ref|YP_002288234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
 gi|209872573|gb|ACI92369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oligotropha carboxidovorans OM5]
          Length = 480

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 81/469 (17%), Positives = 152/469 (32%), Gaps = 40/469 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL+  +        +  V G+++DSR++ P + FFA+ G   DG  FI       
Sbjct: 1   MKLRDLLRG-EAAIDPQAAELAVAGVAVDSRAVKPGDVFFALGGHKTDGARFIEA----- 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A        +     + S+PV   DD   AL   A     R   TI A+TG+ GKT+   
Sbjct: 55  AVKAGAVAVVTGHPHTASVPVVVADDPRRALALAAAVVYPRQPRTIAAVTGTSGKTSVAA 114

Query: 125 MLTIAL----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------LGMS 170
                      +            +           PV +   I E          L  S
Sbjct: 115 FTRQVWDSLGHNAASLGTIGIVSRHRNVYGSLTTPDPVALHRAIDELAGDGVTHLALEAS 174

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     VR      T ++  H+     +E   + K  +F  L   G   +   D 
Sbjct: 175 SHGLDQHRLDGVRITATAFTNLSRDHMDYHPTVEHYLATKLRLFTDLAPEGAPAVIAADH 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                   +       + + G+ +    +L +         M V+ +G++  +    +G 
Sbjct: 235 EHSATVIAAARTHKLNVMTVGR-QGEGIRLVEAAIDGFGQRMTVEHRGQNWRLRLPLVGE 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                +   L    ++ +    A +A +     EG   R     ++    +  +  +   
Sbjct: 294 F---QIENALVAAGLVISTGGDAAQAFAALEHLEGAKGRLELVGDRFGAPVFVDYAHKPD 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
           A     +  L  + P+ +GR + V G     G    +    L   ++  +   V ++   
Sbjct: 351 A----LVKALEALRPYAKGRLVVVFGA----GGDRDAGKRPLMGEIAARHADTVIVTDDN 402

Query: 409 ---FHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A++ A+  +                  ++L  GDV+++  K 
Sbjct: 403 PRSEDPAAIRAAILEAAPGAQNIGDRAEAIRTAVAALAPGDVLLIAGKG 451


>gi|49481794|ref|YP_037976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|196035932|ref|ZP_03103334.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218905045|ref|YP_002452879.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228916552|ref|ZP_04080118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228928963|ref|ZP_04091995.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228947634|ref|ZP_04109924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|229123428|ref|ZP_04252632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|254721449|ref|ZP_05183238.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. A1055]
 gi|49333350|gb|AAT63996.1| N-acetylymuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|195991581|gb|EDX55547.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus W]
 gi|218535272|gb|ACK87670.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH820]
 gi|228660204|gb|EEL15840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus 95/8201]
 gi|228812154|gb|EEM58485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228830770|gb|EEM76375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228843131|gb|EEM88213.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 491

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|30263916|ref|NP_846293.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47529346|ref|YP_020695.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186764|ref|YP_030016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|165872264|ref|ZP_02216901.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167636591|ref|ZP_02394885.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|167641159|ref|ZP_02399414.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|170688860|ref|ZP_02880063.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|170709238|ref|ZP_02899659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|177655552|ref|ZP_02936962.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190565826|ref|ZP_03018745.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227813176|ref|YP_002813185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229602560|ref|YP_002868150.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
 gi|254683375|ref|ZP_05147235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. CNEVA-9066]
 gi|254735955|ref|ZP_05193661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Western North America USA6153]
 gi|254743850|ref|ZP_05201533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Kruger B]
 gi|254754375|ref|ZP_05206410.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Vollum]
 gi|254756742|ref|ZP_05208771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus anthracis str. Australia 94]
 gi|46576983|sp|Q81WC7|MURE_BACAN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|30258560|gb|AAP27779.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Ames]
 gi|47504494|gb|AAT33170.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180691|gb|AAT56067.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. Sterne]
 gi|164711940|gb|EDR17480.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0488]
 gi|167510939|gb|EDR86330.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0193]
 gi|167528014|gb|EDR90820.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0442]
 gi|170125845|gb|EDS94751.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0389]
 gi|170667215|gb|EDT17975.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0465]
 gi|172080081|gb|EDT65178.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0174]
 gi|190562745|gb|EDV16711.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis Tsiankovskii-I]
 gi|227006695|gb|ACP16438.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. CDC 684]
 gi|229266968|gb|ACQ48605.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus anthracis str. A0248]
          Length = 491

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|65321241|ref|ZP_00394200.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bacillus
           anthracis str. A2012]
          Length = 491

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/475 (15%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + +  +       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTVEYMRSTAATVVTYGIDTTSDVMAKDIAMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATQYATHAIY 404

Query: 407 S-----GFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A+ D +    + +  E             +     D++++  K 
Sbjct: 405 TSDNPRSEDPAAILDDMVHGANGNNYEVIIDRKEAIHHAITKAKADDIIIIAGKG 459


>gi|226357198|ref|YP_002786938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus deserti VCD115]
 gi|226319188|gb|ACO47184.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Deinococcus deserti VCD115]
          Length = 493

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 88/479 (18%), Positives = 152/479 (31%), Gaps = 51/479 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              HDL  A+       +P   V G++ ++  + P  AF AI+G  +DGH F+    + G
Sbjct: 1   MRLHDLAAALN-VPTTSLPDLPVVGVTHNAAWVQPGFAFVAIRGAKFDGHSFLQQVREAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+     +    +  +P   V     AL   A A          ++ +TG+ GKTTT
Sbjct: 60  AVAVLGE--GMPDGMNSPLPYLTVPSARAALADAAAALAGHPSRALKVVGVTGTDGKTTT 117

Query: 123 KEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
             +    L                      + +    +      V  TL  M       +
Sbjct: 118 SWLTRHLLREAGLQTGLLSTVGFELPDGELRHFPAHFTTPEAPQVQQTLQDMVAAGASAV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                SH   +  +   V   +AV T +   HL     +E   + K  +    E+     
Sbjct: 178 VLEASSHALALDRV-RGVDWDVAVWTHLTSEHLDFHGTVENYFADKRRLV---ERAPFAV 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD +   L+  + A    ++   G    AD+Q    ++       +V     + +  
Sbjct: 234 LNADDPWTGQLRGVAPAETTYSLDGAG----ADWQATDIQERLTGLHFQVNSPLGAFDAA 289

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N L  +   + L AD       L+ F    GR          G    +  
Sbjct: 290 LPMIGRFNVANALAAMAAAAHLGADAAQLAAGLASFRGVPGR---MELVPAGGQEVRVIV 346

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +   P S+      LS +     GR   ++G     G         L EV +      V
Sbjct: 347 DFAHTPPSL---EKALSTLRATTTGRLWVLIGSAG--GPRDPGKRAPLGEVATRLADHAV 401

Query: 405 WL--------SGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +             +  ++    +    ++            +  +   GD V++  K 
Sbjct: 402 FTEEDSRDTPLEDILREMERGARQGGRTNFISIGDRREAIRHVIQAAGSGDTVLLAGKG 460


>gi|241762286|ref|ZP_04760367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
 gi|241373189|gb|EER62819.1| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
            mobilis ATCC 10988]
          Length = 1058

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 146/461 (31%), Gaps = 37/461 (8%)

Query: 13   AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
            A             V G ++DSR +     F A  G   +G DFI    +K      V  
Sbjct: 584  ASGYGLSPKEKDYPVLGFAVDSRKVEKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 639

Query: 73   DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                 +          ++   A  ++A          + A+TG+ GKT+  E+     + 
Sbjct: 640  VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 699

Query: 133  IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178
                              SY+  +  P  +  +    D    ++       S  G  ++ 
Sbjct: 700  AGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 759

Query: 179  THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +   +      T+ +  HL     +E   +AK  +F+         + + D         
Sbjct: 760  SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVVWADDPAATTVIA 819

Query: 239  SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                    +   G+   A  +L   +  S+   + + +QG+S ++    IG +   N L+
Sbjct: 820  HVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIQGESYKIRLPLIGGYQLSNALV 878

Query: 299  TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              G+V     D+   + AL++  P  GR +R   + N      +D ++  +        +
Sbjct: 879  AAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LRA 932

Query: 359  VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
             +  + PH EGR   V G     G             ++     HV ++     G     
Sbjct: 933  AIEALRPHTEGRLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAAT 988

Query: 414  LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +                          GD+V++  K 
Sbjct: 989  IRKEILVGSPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 1029


>gi|325829979|ref|ZP_08163437.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
 gi|325488146|gb|EGC90583.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase [Eggerthella sp. HGA1]
          Length = 500

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 85/473 (17%), Positives = 153/473 (32%), Gaps = 40/473 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D   A+   A            ++ ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169
            ++        K    IG+    IG                  L     D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F        +    D 
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              ELL  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D ++  +
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                     L+ I     GR + V G     G    +    +    +L     V  S  
Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410

Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ + +       +                 +    GD +++  K 
Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463


>gi|313901771|ref|ZP_07835197.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467977|gb|EFR63465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 500

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 88/485 (18%), Positives = 151/485 (31%), Gaps = 53/485 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DL+  +   ++       + GI+ DSR + P   F AI+G  YDGH FI  AV +
Sbjct: 1   MVNLQDLIAVLPDKTVTGPAGRPIQGITYDSRRVEPGFLFVAIRGLRYDGHSFIAEAVAR 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV------ 117
           GA  VV    +        +P   V     AL  LA A      A+++ +  +       
Sbjct: 61  GAAAVVGERPLALE----GVPYVQVPSSRLALGLLASAFYGHPSASLVMVGVTGTNGKTT 116

Query: 118 -----------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIF 165
                      G   T  + T+      ++     +      +   LA M    +   + 
Sbjct: 117 TTHLIRWVLEAGGHPTGLIGTVHNIIAGRSLPVERTTPEAADLQKLLAAMRDEGMTHAVM 176

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   ++ +       + V T +   HL   + +E+ A+AKA +F  L +      
Sbjct: 177 EV-SSHALALQRVAGCA-FDVGVFTNLTQDHLDFHASMEDYAAAKARLFSRLGRNEIPGT 234

Query: 226 NYDDSFFELLKAKSHALGIK------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                   ++ A               + ++G ++ AD   R+ +         +     
Sbjct: 235 TKPGPKAAVINADDPWGEFMAARSNAPVVTYGLNRPADITARQVEVEPGGIRFILVSPKG 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V     G     N L   G    L  D  T  + L       GR +R          
Sbjct: 295 EAPVRLRLTGRFNVYNALAAAGAGLALGLDPATVARGLESLQAVPGRLERIDRGQPFAVI 354

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                 Y   P  +   +  + +++  G+GR I V G     G             +S  
Sbjct: 355 VD----YAHTPDGLDNVLRSVRELA--GQGRVICVFG----CGGDRDRGKRPQMGAISAR 404

Query: 400 NISHVWLS-----GFHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVV 448
              +  L+          A+ D +   +                           GDVVV
Sbjct: 405 LADYTVLTSDNPRSEDPEAILDDIEAGVRRVPGAAYERVTDRAAAIRRALELARPGDVVV 464

Query: 449 V--KS 451
           +  K 
Sbjct: 465 IAGKG 469


>gi|317489850|ref|ZP_07948344.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
 gi|316911048|gb|EFV32663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella sp.
           1_3_56FAA]
          Length = 500

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 153/473 (32%), Gaps = 40/473 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D   A+   A            ++ ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDLALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PVDVDFGIFELGM 169
            ++        K    IG+    IG     +                  D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLLARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F        +    D 
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              ELL  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D ++  +
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                     L+ I     GR + V G     G    +    +    +L     V  S  
Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410

Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ + +       +                 +    GD +++  K 
Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463


>gi|229061520|ref|ZP_04198864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
 gi|228717754|gb|EEL69404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus AH603]
          Length = 491

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 78/477 (16%), Positives = 149/477 (31%), Gaps = 48/477 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPTENPEITSIEADSRKVKEGSLFICMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFE 166
             ++   + +       IG+ N  IG      +                +   VD  + E
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFSKMVEQGVDSTVME 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIF 224
           +  SH  ++  +       +AV T +   HL     +EE   A        G        
Sbjct: 176 V-SSHALDLGRVHGC-DYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYHHNRE 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  + +  +       T+ ++G    +D   R     S  +   +    +++ V 
Sbjct: 234 KYAILNSDDPVAEEYMRSTAATVVTYGIDVASDIMARDIVMTSGGTTFTLVTPYETVNVT 293

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N+L       +    + T I  +       GR   +        +T+I +
Sbjct: 294 MKLIGKFNVYNVLAATAAGLVSGVSLQTIIDVIKELAGVPGR---FEVVDGGQNYTVIVD 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P S++  +    Q +   +G    ++G     G         +   ++    +H 
Sbjct: 351 -YAHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATEYATHA 402

Query: 405 WLS-----GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          A+ D +   +   +               S +   D++++  K 
Sbjct: 403 IYTSDNPRSEDPKAILDDMVNDVNRDNYEVIVDRKEAIRSAISKVKAEDIIIIAGKG 459


>gi|196230913|ref|ZP_03129774.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
 gi|196225254|gb|EDY19763.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chthoniobacter flavus
            Ellin428]
          Length = 1084

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/490 (15%), Positives = 142/490 (28%), Gaps = 73/490 (14%)

Query: 2    NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            + L +   +++ +            +  ++ DSR + P   FFA+KG   DG        
Sbjct: 597  DALLSHSAIVKVVG------PTDRDITHLTYDSRRVKPGTLFFALKGEKVDG-------- 642

Query: 62   QKGAGLVVVNTDMVASIGSLSIPV------------FGVDDVLGALNKLAVAARLRS--K 107
                          A        V              V +    +   A A        
Sbjct: 643  --------TAFIDAAIAAGAEAIVTENATFRTRATNIVVANARNTMADFAAAFYQNPARA 694

Query: 108  ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              I  +TG+ GKTTT  ++     + +     +G+    IG  +  A         + E+
Sbjct: 695  LKIAGVTGTNGKTTTAFLIKHICEAAQLRCGLLGTVRYEIGDRVLPASRTTPESLDVHEM 754

Query: 168  --GMSHLGEIRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
               M   G                    V    A+ T +   HL     +E    AKA +
Sbjct: 755  LWQMRSAGCKACAMEVSSHALVQARVRDVEFDAAIFTNLTQDHLDYHKTMEAYFEAKARM 814

Query: 214  FEGLEKTGTIFLNYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            F  L            +  +   A+  +       I ++G   +ADF+    +     + 
Sbjct: 815  FSELAAQKKKQGKAIINLDDRYGAQLVTRFGKAIPITTYGLGVHADFRASNVRIDFHGTS 874

Query: 272  MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             ++   G+S  V    IG     N L  +   + +  +V   + AL+      GR     
Sbjct: 875  YQLDAGGRSYLVRLPLIGQFNVYNSLAAVAAANAMGIEVRNCVLALANATAVPGR---LE 931

Query: 332  CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                Q  F +  +  + + A     ++V+         R I V G     G         
Sbjct: 932  AVPAQRQFRVFVDYAHTDDA----LLNVIKTCRELNPARLIVVFG----CGGNRDKTKRP 983

Query: 392  LAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIH---VHYSETMDGLFLFIQSSLVD 443
                +   +  H  ++  +       A+ + +   +                   +    
Sbjct: 984  RMGAVVDQHADHAIVTSDNPRKEEPLAIIEDIKPGMRRGNYEVIVDRREAIFKAVAMAQP 1043

Query: 444  GDVVVV--KS 451
             D++++  K 
Sbjct: 1044 RDIILIAGKG 1053


>gi|325293470|ref|YP_004279334.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
 gi|325061323|gb|ADY65014.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Agrobacterium sp. H13-3]
          Length = 486

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 70/456 (15%), Positives = 136/456 (29%), Gaps = 38/456 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +  +    + GI+ DSR  AP   F A+ G   DG  ++       A        +   
Sbjct: 18  LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKD-----AVAKGAVAVVSGH 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-- 135
                +PV  V D    L+  A     +   T++A+TG+ GKT+    +    +      
Sbjct: 73  AVDADVPVLAVTDPRLYLSLAASRFYGKQPETMVAVTGTAGKTSVASFVRQIWAFAGHAA 132

Query: 136 -------TYACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVR 183
                    A        +  P  +    +  +          +  S  G  +     V+
Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELAAEGVTHAAMEASSHGLDQRRLDGVK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A  T +   H+     IE+  +AK  +F+ L + G   + + D  +     ++ A  
Sbjct: 193 LAAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIRAAADA 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G+  +     R      +Q              +           +   L   
Sbjct: 253 GLNVRTVGRKGDYLTLKRVEHFRHKQLIEVHHDGVIHEVDI----PLAGDFQVANALVAA 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  +   +A  A+       G   R           L    Y   P ++    +VL+ +
Sbjct: 309 GLAMSTGVSAATAMKALEKLIGAAGRLELVGQTKNGALAYVDYAHKPDAL---ENVLTSV 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK-DA 417
            P   GR I V G     G         +   ++      V ++           ++ + 
Sbjct: 366 RPFTSGRIITVFG----CGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEV 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +                 S L +GD ++V  K 
Sbjct: 422 MAAAPGALEIGDRAEAIRHAVSLLSNGDTLIVAGKG 457


>gi|152996632|ref|YP_001341467.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
 gi|150837556|gb|ABR71532.1| UDP-N-acetylmuramyl-tripeptide synthetase [Marinomonas sp. MWYL1]
          Length = 488

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/471 (16%), Positives = 138/471 (29%), Gaps = 41/471 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   LL                N +  DSR +  +  FFA+ G   +G D++   ++ G 
Sbjct: 5   THAQLLNLAGYSLEDSSHSALYNCLETDSRKVDQESVFFALPGVTSNGWDYLNDVIKLGC 64

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            + VV       +    I +  V D +  L     A   +  + ++A+TG+ GK++    
Sbjct: 65  KVAVV--PAELKLQRDDIELVSVADPVKLLVACLHAFFGKMPSKMVAVTGTNGKSSICFY 122

Query: 126 LTIALSSIKKTYACIGSY------------NNHIGVPLTLARMPVDVDFGIFEL--GMSH 171
           +      I  +   +G++                 +      +    + G+  +    S 
Sbjct: 123 IAQLAKYIGFSSGLVGTFGVGPLDRLSEAKQTTPDLLSMHRALMKMAEEGVDFVAFEASS 182

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +     V    AV + ++  HL     +   A          E         DD +
Sbjct: 183 HALDQGRIEGVPFQTAVFSNLSRDHLDYHGDMNSYA-LAKRRLFSFECVSHSIFCLDDGY 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +     A      Y   +   ADF +++           +   G    V    +G  
Sbjct: 242 AGFMAE--GAARSSCHYYSEQDSRADFYVKQLMLEPSGCRFVLCHPGGDTPVFLPLLGCF 299

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             QN L     +     D  T I+ LS      GR  + +             + +A   
Sbjct: 300 NVQNALAAFASLWYGVDDKATLIRGLSTLTGAPGRMDKVQLPNAPLVVVDFAHTADA--- 356

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                   L  +  H  GR I V G     G         L    ++ N  +VWL+  + 
Sbjct: 357 ----LEVALQAVKEHTNGRLICVFG----CGGDRDRGKRPLMMAAAMKNADYVWLTSDNP 408

Query: 412 L--ALKDALPR------SIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
              +++                  E            S    DV+++  K 
Sbjct: 409 RTESIEQIFSDVLAQTNKDAAFSFELDRRMAIHQAILSAGPEDVILIAGKG 459


>gi|257791846|ref|YP_003182452.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
 gi|257475743|gb|ACV56063.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eggerthella lenta DSM
           2243]
          Length = 500

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 153/473 (32%), Gaps = 40/473 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L   I    +G      VNGI+  S  + P +AFF + G   DGH F   A+ +GA
Sbjct: 4   TCTELFAGIDCTILGNADD-EVNGIAYRSDRVQPGDAFFCVVGMTTDGHSFAQDAIDRGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123
            ++VV   +  +  +  +    V D   A+   A          I  + ITG+ GKTTT 
Sbjct: 63  KVLVVERKVYLA-DATDVTEIVVKDTRKAMAAAAANFYDHPSKDIALVGITGTNGKTTTT 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGM 169
            ++        K    IG+    IG                  L     D    +  + +
Sbjct: 122 YLVEHIARVAGKRTGVIGTVGIRIGDEAEKSAHTTPESPDLQQLFARMRDARCDVVAMEV 181

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S        T      +   + +   HL      E    AKA +F        +    D 
Sbjct: 182 SSHALDLDRTWDAAFAVTAFSNLTQDHLDYHHTFEAYFEAKARLFSKDYPAKRVICIDDK 241

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              ELL  +  ++   ++ + G   +A       +     + + + ++G      +  +G
Sbjct: 242 WGKELL--RRCSVAEDSVVTTGFDPSAQIHPVDVQYAPTHTTVTLDVRGSLHTFDYPLVG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N++   GI   L    +T ++AL       GR +R       G    +D ++  +
Sbjct: 300 KFNVENVMCAFGIGLQLGFPAETIVEALEEAPQIPGRLERVSAPNTGGVSVFVDYAHTPD 359

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                     L+ I     GR + V G     G    +    +    +L     V  S  
Sbjct: 360 ALE-----KALASIMALTPGRTVCVFG----CGGDRDASKRPIMGKAALAADHAVVTSDN 410

Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  A+ + +       +                 +    GD +++  K 
Sbjct: 411 PRTEDPQAIIEDIVSGMSSGAGRFEVEADRRAAIARAIAQAKPGDSILIAGKG 463


>gi|229490463|ref|ZP_04384304.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
 gi|229322753|gb|EEN88533.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Rhodococcus erythropolis SK121]
          Length = 544

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 142/477 (29%), Gaps = 60/477 (12%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT---- 72
             +         GI  D       + F A+ G    G  F + A+ +GA  ++ +     
Sbjct: 49  EVVVKGVDLRAQGIVTD-------DLFAALPGARTHGAQFAVDALGRGATAILTDEAGLE 101

Query: 73  --DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128
             +        S+PV    +    L +++     R   K  ++ ITG+ GKTTT  +L  
Sbjct: 102 LIEAADKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVGITGTSGKTTTSYLLEA 161

Query: 129 ALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHL 172
           A++   +    +G+    I                   L        +D  + E+  SH 
Sbjct: 162 AIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMAEQGIDTVVMEV-SSHA 220

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDS 230
             +  +  + R  I   T ++  HL      EE   A A+    E   +     +  DD 
Sbjct: 221 LALGRVDGI-RFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDPESTVRAEHAVVCVDDV 279

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   +   +       + +   S           + +E      +L G   +     +  
Sbjct: 280 WGRRMAELAATDESDAVTTVSTSTAEAEWTVGAVEVAEDGSQTFELVGPDGQSWPVSLRL 339

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+      +++  A       A+      +  G+  R    Q F  ++D ++    
Sbjct: 340 PGRYNVANAALALTVSFAAGLDPDAAVRALGTVDVPGRVQRIDRGQSFLAVVDYAHKPAA 399

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                   V++ +     GR   V+G     G    +    L           + ++   
Sbjct: 400 LEA-----VIATLRNQVPGRVAVVVGA----GGDRDAGKRALMGEAGARGADLLIVTDDN 450

Query: 409 ---FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   ++ ++ +            V                   GDVV+V  K 
Sbjct: 451 PRTEDPAKIRASVMQGAMDVPESERGEVREVGDRAAAIEQAVRWAQPGDVVLVAGKG 507


>gi|296284503|ref|ZP_06862501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Citromicrobium bathyomarinum JL354]
          Length = 495

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 143/479 (29%), Gaps = 56/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK- 63
              + LL+   G          V G +ID R +AP   F A  G   +G DFI  AV   
Sbjct: 1   MKLNRLLEQ-AGREDRGAEDAIVTGFAIDHRKVAPGTVFGAFAGAKVNGEDFIDAAVAAG 59

Query: 64  --------GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
                   GA +                     +    A  ++A      +  TI+A+TG
Sbjct: 60  AIAVVVRPGAKV-------------EGALQIADEAPRKAFAEIAAQYFTPAPDTIVAVTG 106

Query: 116 SVGKTTTKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           + GKT+T EM       +                  + +      +    A +      G
Sbjct: 107 TNGKTSTVEMTRQLWRMLGERAASIGTLGVTTPDESVSTGLTTPDIVTFHANLSGLAREG 166

Query: 164 IFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +  +    S  G  ++  +  R      T  +  HL     ++    AK  +F+ +   G
Sbjct: 167 VTHIAYEASSHGLDQYRNYGARVVAGAFTNFSRDHLDYHESMQAYFEAKMRLFDEVIADG 226

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              + + D      KA++ A            +  D  L   +       +E+   G   
Sbjct: 227 GTAVIWADGGEWADKARTRAEKRGLRIFTVGPQGDDICLIGQEPSQLGQSVEIARNGDRR 286

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    IG + A N L    +     AD      A+    P  GR          G    
Sbjct: 287 TIRLPLIGQYQAANALTAAALALASGADEARLWDAVGRLQPVRGR-LERAVITQSGAPVY 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +          ++ + PH  GR I V G     G    +        ++    
Sbjct: 346 VDYAHTPDALEA-----AIAALRPHVNGRLIVVFGA----GGDRDTGKRGPMGEVASRLA 396

Query: 402 SHVWLS-----GFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V ++     G     ++ A+      +                 +   D+V++  K 
Sbjct: 397 DVVIVTDDNPRGEDPADIRRAVMQGAGENTREVAGRREAIAQAIEIIGRDDIVLIAGKG 455


>gi|309783016|ref|ZP_07677735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
 gi|308918124|gb|EFP63802.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Ralstonia sp. 5_7_47FAA]
          Length = 514

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 137/460 (29%), Gaps = 47/460 (10%)

Query: 30  ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G    H DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQHGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92

Query: 86  FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD +      LA             +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186
                G    LA         I                  + +S  G  +         I
Sbjct: 153 LGT--GFVDALAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F        +    D +   LL+     +    
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIETIE 270

Query: 247 IYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               G+           +    +     +  +V        V    +G     N+L  LG
Sbjct: 271 YGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG 330

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +         AI  L    P  GR +R+               Y   P +++  +  L+
Sbjct: 331 ALLTAGVPWPDAIAHLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDA 417
            I+    G+  AV G     G+        +  +        V  S          + D 
Sbjct: 387 PITEARGGKLWAVFG---CGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILDE 443

Query: 418 LPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +   +H        E      L         DV+VV  K 
Sbjct: 444 IADGMHNPRAATQIEDRAAAILHAVRHADAHDVIVVAGKG 483


>gi|203287659|ref|YP_002222674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
 gi|201084879|gb|ACH94453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           [Borrelia recurrentis A1]
          Length = 508

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 151/464 (32%), Gaps = 50/464 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I    +  + G++ DSR ++    FFA+ G +++G  FI  A+Q+G+ ++V   D+    
Sbjct: 23  IIGSCEVEILGLAYDSRCVSFNFVFFALPGLYFNGQKFIESAIQRGSNVIVHTNDI--DF 80

Query: 79  GSLSIPVFGVD--DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIK 134
              ++    VD  ++   ++  A         K  II +TG+ GK++    +   L S+ 
Sbjct: 81  YDSNVTYIKVDPCNIKRFMSNFAHVFYDEPSKKLKIIGVTGTDGKSSVCFYIYTLLKSMG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEI 175
                I +     G    +                        +V++ I E     L + 
Sbjct: 141 AKVGFISTVFLEDGSGALVKNPYRQSTPESTEIHLVLSKMVANNVEYAIIESTSHGLDDR 200

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +   +AV+T I+  HL     ++    AK  +F      G        +  +  
Sbjct: 201 TSRLLDIEYSVAVLTNISHEHLEFHGTMQNYLRAKLNLFYSANSHG---GFGIINMDDNH 257

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            +       +T     K++ ADF + K  +    +  E            +  G    +N
Sbjct: 258 FSVFMNSINRTYTYSLKNEKADFFISKINEQMGFTEFEFYHNKTKYAARVNLTGSFNVEN 317

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ++  L +VS +     + +    +    E    R +       F+LI +  +   A    
Sbjct: 318 VMAALIVVSQIMNVDISKLICKLIN--IESLYGRMQDINFGQDFSLIVDYAHTPGA---- 371

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFH 410
            + +        + R I+V G   E           L   ++      + L      G  
Sbjct: 372 FLKMFPIFKRLAKKRLISVFGSAGE----RDILKRRLQGEIADEYSDVIILCDEDPRGED 427

Query: 411 VLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVV 447
            + +   +   I        + +            +     D+V
Sbjct: 428 SMQIIRDIAEGIVTKTLNRDLFFIPDRKCAIEKAINIACSDDLV 471


>gi|119952998|ref|YP_945207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
 gi|119861769|gb|AAX17537.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-ornithine ligase
           [Borrelia turicatae 91E135]
          Length = 506

 Score =  110 bits (274), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/462 (15%), Positives = 153/462 (33%), Gaps = 46/462 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I    +  + G++ DSR +     FFA+ G H+DG +FI  A+++G+ ++V   D+    
Sbjct: 23  IKGSCEVEILGLTYDSRCVLSHFVFFALPGLHFDGQEFINSAIEQGSNVIVHTNDINFYD 82

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +++       ++   ++  A            II +TG+ GK++    +   L S+   
Sbjct: 83  PNVTYIKIDSCNIKKFMSNFAHIFYNEPSKNLKIIGVTGTDGKSSVCFYIYTLLKSMGVK 142

Query: 137 YACIGSYNNHIGVPLTLARMP-------------------VDVDFGIFELGMSHLGEIRF 177
              I +     G    +                        +V++ I E     L     
Sbjct: 143 VGFISTVFFEDGSGTLVKNPYRQSTPESTEIHLVLSKMVENNVEYAIVESTSHGLDIRTS 202

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +AV+T ++  HL     ++   +AK  +F   +  G        +  +   +
Sbjct: 203 RLIDIAYFVAVLTNVSHEHLEFHGTMQHYLNAKLNLFSSADANG---GFGIINMDDKNFS 259

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                  +      ++KNADF + K  +    +  E   +    +   +  G    +N++
Sbjct: 260 TFLNTINRAYTYSLENKNADFFVSKINEQMGFTEFEFYHKNVKYDARVNLTGSFNVENVM 319

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +VS +     + +    V    EG   R +       F+LI +  +   A     +
Sbjct: 320 AALIVVSQVMNVDVSELIDKLVN--IEGLFGRMQGVDFGQDFSLIIDYAHTPGA----FL 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410
            +        + R I+V G   E           L   ++      + L           
Sbjct: 374 KIFPIFKRLSKNRLISVFGSAGE----RDVLKRKLQGEIADRYSDIIILCDEDPRGEDSM 429

Query: 411 --VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  + + +     +  + +            +     D+V
Sbjct: 430 QIIRDIAEGISGKTLNRDLFFIPDRKSAIEKAINIAHTDDLV 471


>gi|121535922|ref|ZP_01667718.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305493|gb|EAX46439.1| cytoplasmic peptidoglycan synthetases domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 183

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             +    +  +T+I+++YNA+P SM++AI  L++I+    GR+IAVLGDM E+G +++  
Sbjct: 46  MRQHIEKKAGYTIINDAYNASPLSMQSAIETLAEIA---GGRKIAVLGDMLELGHVAKEA 102

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           H  + + L+   +  V   G     +               +T +     ++  +  GD 
Sbjct: 103 HRRVGKQLAEIGVDTVITVGTLARDIAVTAKACGVACAIACDTHEEAKDVLRQVMQAGDT 162

Query: 447 VVVKSSNSCGFYRLIN 462
           ++VK S      ++++
Sbjct: 163 ILVKGSRGMKMEKVLD 178


>gi|159902952|ref|YP_001550296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9211]
 gi|159888128|gb|ABX08342.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9211]
          Length = 505

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/480 (13%), Positives = 136/480 (28%), Gaps = 39/480 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + H LL+AI       +    +  IS DSR +   + FF + G   +G  F   A   GA
Sbjct: 4   SLHSLLKAIGLDVPIDLQDPEIKNISSDSRCVKKGDLFFGLPGQKDNGGAFCNEAFLAGA 63

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITG-------- 115
              VV ++            V  V D +   + ++A     +    +  I          
Sbjct: 64  VAAVVGDSARDCIPHDKKNLVVVVPDPVSQWMGEIASVFWGKPSLEMALIGVTGTNGKTT 123

Query: 116 --------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
                   S        +L   ++   K         +            V     +  +
Sbjct: 124 TTHLIEHLSKSSGKATALLGTLINRWPKYSEQSIHTTSFGDTLNAQLSQIVASGASLCAM 183

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-- 225
            +S     +     +    A+ T +   HL     +E    AKA +F+            
Sbjct: 184 EVSSHALSQRRVAGLYFSGAIFTNLTQDHLDYHKSMEAYFEAKALLFQSYLIKDGQARAV 243

Query: 226 -NYDDSFFELLKAK--SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            N DD +   L  +   +           +S   +  +   K  +  +   +        
Sbjct: 244 VNIDDQWGFRLAKRLGRNCWKSSLDLKNIQSVRPELFITGIKMTAAGAEGFIHTPFGEGP 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +   IG     N+L ++G++      +DT + A + F    GR ++ +  +      + 
Sbjct: 304 FMTPLIGRFNLMNLLQSIGVLLQQGFKLDTLLHATATFSGVPGRMEQVKVPVKSDSLPMP 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +          + L  + P   G+ I V G     G             ++     
Sbjct: 364 IVLVDYAHTP-DGLKNALKAVRPFVSGKLICVFG----CGGDRDKSKRSYMGEIAAEISD 418

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +   +P +                       D++++  K 
Sbjct: 419 IVIVTSDNPRTEDPMAIIEDILSGIPTTFEAIVELDRCKAIEMSILHAKSNDLIIIAGKG 478


>gi|206976777|ref|ZP_03237681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217961336|ref|YP_002339904.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|229140563|ref|ZP_04269118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
 gi|206745087|gb|EDZ56490.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus H3081.97]
 gi|217067561|gb|ACJ81811.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Bacillus cereus AH187]
 gi|228643124|gb|EEK99400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Bacillus cereus BDRD-ST26]
          Length = 491

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 76/475 (16%), Positives = 147/475 (30%), Gaps = 44/475 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              H L+  +    +       +  I  DSR +     F  +KG   D HDF        
Sbjct: 1   MKLHTLVSCLHDFPVVPKENPEITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQ----- 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A        +      + +PV  V +   +L  LA     +   K  +I ITG+ GKTTT
Sbjct: 56  AAAQGAAAIVAERPIDVDVPVVLVKNTFRSLAVLADYFYGQPTHKLHLIGITGTNGKTTT 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------MPVDVDFGIFE------LG 168
             ++   + +       IG+ N  IG      +        +       +        + 
Sbjct: 116 SHIMDEIMRAHGHKTGLIGTINMKIGDETFEVKNTTPDALTLQQTFAKMVEHGVDSTVME 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLN 226
           +S         H     +AV T +   HL     +EE   A        G          
Sbjct: 176 VSSHALDLGRVHGCDYDVAVFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKY 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  + + A+       T+ ++G    +D   +     S  +   +    +S+ V   
Sbjct: 236 AVLNNDDAVTAEYMRSTAATVVTYGIDTTSDVMAKDIVMTSGGTTFTLVTPYESVNVTMK 295

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L       +    ++T I  +       GR   +        +T+I + Y
Sbjct: 296 LIGKFNVYNVLAATAAGLVSGVSLETIIDVIKELAGVPGR---FEVVDGGQNYTVIVD-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P S++  +    Q +   +G    ++G     G         +   ++    +H   
Sbjct: 352 AHTPDSLENVLKTAKQFA---KGDVYCIVG----CGGDRDRTKRPIMASVATRYATHAIY 404

Query: 407 SGFHVL-----ALKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +       A+ D +      +  E             ++    D++++  K 
Sbjct: 405 TSDNPRSEEPGAILDDMVHGAIGNNYEVIIDRKEAIYHAIANAKAEDIIIIAGKG 459


>gi|270285330|ref|ZP_06194724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|270289346|ref|ZP_06195648.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Weiss]
 gi|301336727|ref|ZP_07224929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum MopnTet14]
 gi|30316392|sp|Q9PKC6|MURE_CHLMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
          Length = 483

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 153/470 (32%), Gaps = 42/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA 
Sbjct: 3   LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            ++ +         LS+     +D+      LA            +I +TG+ GKTT   
Sbjct: 63  AILSS----LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           +    +    +    +G+  + +G    +          + +              + +S
Sbjct: 119 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T ++  HL      EE   AK ++F  L + G   +N D  
Sbjct: 179 SIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSDCE 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + +     S A G+    S+   + AD++    K  S  S  ++  QG         +G 
Sbjct: 239 YAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGE 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L  L +V  +       +     +            +     +      Y   P
Sbjct: 295 HNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCPIYID----YAHTP 350

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++     +LSQ+ P  +GR I V G     G         +   ++      V  S   
Sbjct: 351 DALDNVCKILSQLLP-ADGRLIIVFG----CGGDRDHSKRPIMAKVAETYGFSVVTSDNP 405

Query: 409 --FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   +                   +   S  +D D+V+V  K 
Sbjct: 406 RTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKG 455


>gi|15835158|ref|NP_296917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
 gi|7190580|gb|AAF39380.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chlamydia muridarum Nigg]
          Length = 486

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 153/470 (32%), Gaps = 42/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ I     G V    V  ++ DSR     + F A +G   +G+D+   AV+ GA 
Sbjct: 6   LDQLLRDIPAKIYGKVESIPVRNLTRDSRCTGVGDIFIARQGQMCNGNDYSGQAVENGAI 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            ++ +         LS+     +D+      LA            +I +TG+ GKTT   
Sbjct: 66  AILSS----LYNPFLSVVQIVTEDLTALEACLAARFYNDPSKRLDVIGVTGTNGKTTVSA 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           +    +    +    +G+  + +G    +          + +              + +S
Sbjct: 122 LARELMEYKGRCTGLVGTIEHILGEHRIIDSFTTPDAILLQKYFAEMVKQNLSSAVVEVS 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +G              V+T ++  HL      EE   AK ++F  L + G   +N D  
Sbjct: 182 SIGLALGRVRETEFLAGVLTNVSLDHLDFHGSFEEYVVAKKQLFVSLPEHGVAVVNSDCE 241

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           + +     S A G+    S+   + AD++    K  S  S  ++  QG         +G 
Sbjct: 242 YAQSFLEISPARGV----SYAVHQEADYRAVNLKFSSLGSTFDILYQGNVFSCETSLVGE 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N+L  L +V  +       +     +            +     +      Y   P
Sbjct: 298 HNVYNVLAALSVVHQILGGDFAELVHYVRYLSAPKGRLEPVLSGPCPIYID----YAHTP 353

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
            ++     +LSQ+ P  +GR I V G     G         +   ++      V  S   
Sbjct: 354 DALDNVCKILSQLLP-ADGRLIIVFG----CGGDRDHSKRPIMAKVAETYGFSVVTSDNP 408

Query: 409 --FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   +                   +   S  +D D+V+V  K 
Sbjct: 409 RTEDPDQIIADICSGFSTDRYVIESDRRLAIVKAISMALDKDIVLVAGKG 458


>gi|213647637|ref|ZP_03377690.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Salmonella enterica subsp. enterica serovar Typhi str.
          J185]
          Length = 90

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
          M  + T   +   +     G      ++ +  D+R + P   F A+KG  +D HDF   A
Sbjct: 1  MISV-TLSKIADVLGAEHRG--ADLTLDTVITDTRKVTPGCLFVALKGERFDAHDFADKA 57

Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
             GAG ++V+  +      + +P   V D   A  +L
Sbjct: 58 KANGAGALLVSRPL-----DIDLPQVIVKDTRQAFGQL 90


>gi|326771701|ref|ZP_08230986.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
 gi|326637834|gb|EGE38735.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces viscosus C505]
          Length = 528

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 142/461 (30%), Gaps = 40/461 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
               + G+S+DS    P E F  + G    G  F   AV  GA  V+ + D    +    
Sbjct: 43  NDLSILGVSVDSADTVPGELFVGLPGFTVHGARFAADAVASGAVAVLTDADGAQIVHQTA 102

Query: 82  -SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              PV    D    +  L+              A+TG+ GKTTT   L   LS+      
Sbjct: 103 PGTPVLVHSDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCM 162

Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             G+    +G              V   +  + V+   G   L  S    +      +  
Sbjct: 163 VAGTVELRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGIVV 222

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL     +E    AKA++F   E      +  DD +   L A++     
Sbjct: 223 DVAGFTNLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEAPIEID 281

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +     G++    +        ++ +           ++        +       L +V 
Sbjct: 282 RVRAYPGETPADWWVSDAAVSLTDSATTFTLHGPDGEKIEASCPLPGLVNVQNAALALVM 341

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A V  A  A+++       G+  R +   G   L    +   P +M+ A+     + 
Sbjct: 342 AIRAGVPAATAAMALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPDAMELALKA---VR 398

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALP 419
           P   GR I V G               +   +       + ++  +  +     +++A+ 
Sbjct: 399 PITPGRLIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAIL 454

Query: 420 RSIHVHYSE--TMDG-------LFLFIQSSLVDGDVVVVKS 451
             +     +   ++                    D V+V  
Sbjct: 455 EGVRGVRPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495


>gi|227514107|ref|ZP_03944156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087478|gb|EEI22790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 511

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 83/502 (16%), Positives = 154/502 (30%), Gaps = 66/502 (13%)

Query: 1   MNPLWTFHDLLQ-----------AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFA 45
           M    T  +++             + G      P+   N     +S DSR++     FF 
Sbjct: 1   MT--MTLSEIITVLKDAGLFKELIVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC 58

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAA 102
            KG  +D   ++  A  +GA + +   D  A +       +P   V D+  A+  ++ A 
Sbjct: 59  -KGLKFDP-KYLTMAANQGASVAMAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAF 116

Query: 103 RLRS--KATIIAITGSVGKTTTKEMLTIALSSI-----------KKTYACIGSYNNHIGV 149
                   T+I  TG+ GKTT+       ++              +          H+  
Sbjct: 117 FGFPDRNLTVIGYTGTKGKTTSVYFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTT 176

Query: 150 P-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSG 202
           P       + +  VD       + +S     +     +   I V   I+P H+S      
Sbjct: 177 PESLDLFRMMKEAVDNQMKYLVMEVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPS 236

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR- 261
            E+  + K+EI +               +   L  K+H LG + I        AD+Q R 
Sbjct: 237 FEDYLACKSEIIDNCRILVVNRECSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRL 293

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                   +     L     +      G     N L  L + + +    +     L+   
Sbjct: 294 GEHGYFTVTTANPALPKLDGDFRVMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETT 353

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
                        ++       + Y  N  S+ A+ + +       +GR I V+G     
Sbjct: 354 VPGR----MEFIKDKQGVVACVD-YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA--- 403

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDG 432
           G  ++S   D+   LS Y    +  S          +   +  +I      V  +     
Sbjct: 404 GGKAESRRKDIGRALSQYADVAILTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKA 463

Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454
                 +    GD  +  ++  
Sbjct: 464 AIEQAYAMAKPGDA-LFMAAKG 484


>gi|294666416|ref|ZP_06731660.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292603785|gb|EFF47192.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Xanthomonas
           fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 463

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 97/402 (24%), Positives = 152/402 (37%), Gaps = 53/402 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSI-----KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            ++A+TGS GKT+ K +L   L           YA  G+ NN IG+PL +   P D D  
Sbjct: 62  RVLALTGSNGKTSVKALLLSILQEAGRVDGTTVYATPGNRNNEIGLPLAVLAAPDDADVA 121

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I+E+G    G+I +LT + +PH+A++  IAPAHL     +  +A  K  I+  L   G  
Sbjct: 122 IYEMGAGKPGDIAYLTEIAQPHVALVNNIAPAHLERLGSLLGVAQTKGAIYAALPADGVA 181

Query: 224 FLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +N DD+F    + +  +  ++   +  +G   +A+   R+ +     +   +       
Sbjct: 182 VINADDAFGMWFEQQLQSQPVQGRRVLRYGVQASAEITARQLRLHPGGAQFTLVTPQGEA 241

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++     G H   N L   G+       +      L+   P  GR              L
Sbjct: 242 QIALPLPGRHNVLNALAATGLALGAGIALPVIAAGLAQARPVAGRQIAQTLPNGA---VL 298

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+SYNANP S+ AAI  L+       G    VLGDM E+G    + H           +
Sbjct: 299 IDDSYNANPGSLDAAIDALAAAP----GEGWLVLGDMRELGAEGVALHAAAGRRARAAKL 354

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL------------------VD 443
             ++  G    A   A      V    T   L   +Q+ L                   +
Sbjct: 355 QRLYALGELSAAAAQAFGEGGRV--FATHAELIDALQADLVGAASQQQQMQQHASGNTQE 412

Query: 444 GDV-------------------VVVKSSNSCGFYRLINLLLE 466
             V                   ++VK S      R++  LL 
Sbjct: 413 HAVNQEQQSPSVAALSGAAPITILVKGSRGSAMDRVVTALLA 454


>gi|297569455|ref|YP_003690799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925370|gb|ADH86180.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 541

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 85/511 (16%), Positives = 150/511 (29%), Gaps = 81/511 (15%)

Query: 11  LQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
             A+    +  G   +  V  ++ DSR   P   F A+ G   DGHDF+  AV++G  +V
Sbjct: 9   AAAVDYTVLAEGASAELEVTTVTADSRRAGPGSLFVALPGSRVDGHDFLAAAVKQGCRVV 68

Query: 69  VVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
           +      + +  +  +      D   A  +L  A R     +  +I ITG+ GKTT   +
Sbjct: 69  LCQPGCRLPTEKAPEVLHLATADTRAAFGRLCAALRGFPAQEMVMIGITGTNGKTTASYL 128

Query: 126 LTIALSSI---KKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFL 178
           L   +            +     +  +P T      +        + E G+SH+      
Sbjct: 129 LEDLIRRAGGEPGVIGTVNYRYRNRVLPATHTTPDPESLQPLLREMAEAGVSHVIMEVSS 188

Query: 179 THLVR-------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-------------- 217
             L +          A+ T ++  HL     +E   + K  +F                 
Sbjct: 189 HALEQQRVAGIAFDAALFTNLSHEHLDYHGDMESYFAGKKLLFNRYLKPGAAAVVLSGRA 248

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-------QS 270
           E+       ++    + L  +    G +     G+ +         +             
Sbjct: 249 EQDDASLDCWNQRLIDELSPRVLPPGCRRRPKAGEVRLWRCGAAGNELRLLRRRLSLAGI 308

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             E+Q    +  +    +G     N+L   G+   L     T   AL+   P  GR +R+
Sbjct: 309 EAELQSSEGAWRLSSTLVGDFNLDNLLGVAGVGLALGMTPATIAAALADAAPPPGRLERF 368

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R             + +A          VL  +     GR + V G     G        
Sbjct: 369 RSRRGVEVLVDYAHTPDA-------LGHVLKALRRLATGRLVVVFG----CGGDRDRAKR 417

Query: 391 DLAEVLSLYNISHVWLSGFH------VLALKD-------------------ALPRSIHVH 425
            L   ++      V L+  +         + D                   A P +    
Sbjct: 418 PLMGEVAAALADIVVLTSDNPRSEAPAAIMADIQRGLATVDARRGRLESLLAAPLNRRTT 477

Query: 426 Y-----SETMDGLFLFIQSSLVDGDVVVVKS 451
                   +              GDVV+V  
Sbjct: 478 CQGYDLVVSRRQAIRDTIYHARSGDVVLVCG 508


>gi|320531617|ref|ZP_08032559.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136146|gb|EFW28152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 528

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 142/461 (30%), Gaps = 40/461 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-- 80
               + G+S+DS   AP E F  + G    G  F   AV  GA  V+ ++D    +    
Sbjct: 43  NDLSILGVSVDSADTAPGELFVGLPGFTVHGARFAAEAVASGAVAVLTDSDGAQIVHESA 102

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYA 138
              PV    D    +  L+  A       +I  A+TG+ GKTTT   L   LS+      
Sbjct: 103 PGTPVLVHGDPRAIVGPLSAEAYHHPARGLITTAVTGTNGKTTTAYFLDAILSAHVGGCM 162

Query: 139 CIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
             G+    +G              V   +  + V+   G   L  S    +      +  
Sbjct: 163 VAGTVELRVGEHSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGIVV 222

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A  T +   HL     +E    AKA +F   E      +  DD +   L A +     
Sbjct: 223 DVAGFTNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVVCVDDQWGAALAADAPIEID 281

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +     G +    +        ++ +           ++        +       L +V 
Sbjct: 282 RVRAYPGDAPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVM 341

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            + A V  A  A ++       G+  R +   G   L    +   P +M+     L  + 
Sbjct: 342 AIRAGVPAATAAAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMEL---ALKAVR 398

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALP 419
           P   GR I V G               +   +       + ++  +  +     ++DA+ 
Sbjct: 399 PITPGRLIVVFGSDG----DRDQGKRPMLGQVCARLADVLVITDENPRSEDPQLIRDAIL 454

Query: 420 RSIHVHY--SETMDG-------LFLFIQSSLVDGDVVVVKS 451
             +       + ++                    D V+V  
Sbjct: 455 DGVRGVRPDLKDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495


>gi|220906058|ref|YP_002481369.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7425]
 gi|219862669|gb|ACL43008.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7425]
          Length = 501

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/483 (17%), Positives = 157/483 (32%), Gaps = 50/483 (10%)

Query: 5   WTFHDLLQAIQ--GHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
               +LL A+Q     IG +P        +  +S +S +  P   F  + G   DG +F 
Sbjct: 1   MKLRELLTAVQSEITLIGDLPCHPALDREITSLSTNSWACQPGSLFIGMPGTRVDGGNFW 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             A+     +  + +  V         V  V DV  A   +A A       +  ++ +TG
Sbjct: 61  ASAISA-GAVAALVSAAVPLPDPAEACVIPVQDVSRACGAIAAALYNYPTQRLKLVGVTG 119

Query: 116 SVGKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPV--------D 159
           + GKTTT  ++   L+   +             G     +        +           
Sbjct: 120 TNGKTTTTHLIEYLLNQTGQPTALLGTLYTRWPGYQETAVHTTPFAVELQGQLASAVKAG 179

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             F + E+  SH      +       + V T +   HL     +E+  SAKA +F     
Sbjct: 180 CPFAVMEV-SSHALAQGRVQGCT-FQVGVFTNLTQDHLDFHKDLEDYFSAKALLFSPGYL 237

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +G   +N DD + + L  +     + T  +      ADF  R     +      +     
Sbjct: 238 SGKAIINQDDPYGQRLIQQLEPAQVWTYSTS--DSTADFYTRDLNYLANGVEGILHTPEG 295

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +      +G     N+L  +G    L  ++ T   AL  F    GR ++ + A +Q   
Sbjct: 296 EIAFTSPLVGQFNVANLLAAVGAALSLGVNLTTIAAALPQFSGVPGRMQQVQVAPSQDIS 355

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++  +        ++L    P  + R I V G     G             ++  
Sbjct: 356 VIVDYAHTPDSLE-----NMLRAARPFVKHRMICVFG----CGGDRDRTKRPKMGGIAAQ 406

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +            +   +P  +++               +   GD V++ 
Sbjct: 407 LADQVVVTSDNPRTEDPQRILEDILTGVPDGVNLIVEGDRRKAIQTAILNAQPGDSVLIA 466

Query: 450 -KS 451
            K 
Sbjct: 467 GKG 469


>gi|189184781|ref|YP_001938566.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
 gi|189181552|dbj|BAG41332.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Orientia tsutsugamushi str. Ikeda]
          Length = 489

 Score =  109 bits (272), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 71/458 (15%), Positives = 150/458 (32%), Gaps = 49/458 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++ +   + S  +    V 
Sbjct: 15  IRNIAITAQSAKPNQIFFALPGISRHGNDFIDIALANGASLIITDQAPITSYSN----VI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI------------- 133
            V ++   +  +      +    ++A+TG+ GKT+                         
Sbjct: 71  VVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAASIGTLGVI 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-----------LGMSHLGEIRFLTHLV 182
                     N +   P     M       +             L  S  G  +     +
Sbjct: 131 TTNNHLNKLLNQNKIKPECATTMSYIQTRYVLHQLATNGINFVALEASSHGLDQNRLMDI 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   A  T+ +  HL     + +   AK     E +   G   +N + +   ++++K   
Sbjct: 191 KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELSIIQSKITD 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + S    +  D Q+   +       +  + +    +     IG     N+L+ L 
Sbjct: 251 EFGLKLLSV--EQQGDIQIIDVQSSLNGQKVHFRYKNSDYKFEVPVIGRVHITNILIALL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +  D    I  LS   P +GR            +  +D +   N  +      +  
Sbjct: 309 LAINIGLDSAKLIPLLSNLKPIKGR---MEKIQFGNCYAFVDYALTPNALATM----LTE 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
             + + +GR I + G        + +  + +  V S  +   V ++          A++ 
Sbjct: 362 LRALNNKGRLITIFGGSEN--RDAIARRVQMGIVASKLS-DLVIVTDQDSGNEDPAAIRK 418

Query: 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + +                +  S +VD D++++  K 
Sbjct: 419 EILQVARSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456


>gi|160914185|ref|ZP_02076407.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
 gi|158433996|gb|EDP12285.1| hypothetical protein EUBDOL_00194 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 144/352 (40%), Gaps = 19/352 (5%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDF 162
                 II ITGS GKT+ K +L   ++    T     SYNN +G+      ++    + 
Sbjct: 177 QHQNLHIIGITGSYGKTSVKHILYQLIAQQYYTLMTPHSYNNKMGITLTIRKQLQSLHEV 236

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+G  H+ EI  L   V+P  +++T I P HLS F  +E I   K +  E L K   
Sbjct: 237 FLCEMGADHVHEISALMAFVKPSWSIVTAIGPQHLSTFQTMEHIVHEKMQAIECLPKD-- 294

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +       +        I ++G    AD++++      + +  ++ ++G    
Sbjct: 295 --GIGFLNIDNAWIREYPIQNTCRIVTYGTHAAADYRIKDIVYSKQGASFKIHVKGVDYA 352

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H   N+   + +   L  ++    +        E R +          +T++
Sbjct: 353 FHTKLLGKHNVVNIAAGIAVAHCLGIELSVLQELTKHLPYVEHRLQ----LRPTSSYTML 408

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YN+N      A+ VL+++    EG+ I V     ++G++ ++ H+ L + L+     
Sbjct: 409 DDAYNSNVEGATYALEVLAKM----EGKHIVVTPGFLDLGDMEENAHVRLGKQLTQVA-D 463

Query: 403 HVWLSGFH-VLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G H    +   L ++     HV+  E +   F  ++       VV+ 
Sbjct: 464 EVILVGQHQSKHIVKGLQQAQYDSRHVYVCENIQEAFELLKQLATKDSVVLF 515


>gi|323356838|ref|YP_004223234.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
 gi|323273209|dbj|BAJ73354.1| UDP-N-acetylmuramyl tripeptide synthase [Microbacterium testaceum
           StLB037]
          Length = 552

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/479 (15%), Positives = 156/479 (32%), Gaps = 41/479 (8%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P     +L +     S+G V    + GI++ +  +   EAF AI+G +  G +F   A +
Sbjct: 19  PQRDLAELARRFGVRSVGEVEGTTLTGITLATADLRAGEAFVAIRGVNRHGAEFAATAAE 78

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVG 118
           +GA  V+ + +      S  +P+  V+D    L  L+              ++A TG+ G
Sbjct: 79  RGAVAVITDAEGAEIAASTGLPIVIVEDPRALLGDLSAWVYGTGPDDDIPQLLATTGTNG 138

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLGEIR 176
           KT+   +L   L  +        +   HI   + ++R+  P   +F      M   G   
Sbjct: 139 KTSVSHLLEGILGQLGVVTGLSSTAERHIAGEVIVSRLTTPEASEFHALLALMRERGVEA 198

Query: 177 ------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                            +   +A  T +   HL +++ + E   AK  +F        + 
Sbjct: 199 VAVEVSAQALTRHRVDGLVFDVAGFTNLTHDHLDDYADMREYFEAKLPLFRADRARRGVV 258

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL---RKWKQCSEQSWMEVQLQGKSM 281
                S  E++      +      +  +  +AD         ++     +      G+++
Sbjct: 259 CLDSASGAEIVARAEIPVVTIVTPAIAEDPSADADWTVDIVDERQEGTEFTLRARDGRAL 318

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V   IG HMA N  + + ++       +  + AL           R +         +
Sbjct: 319 TTVVPVIGRHMAANAGLAIVMLLETGYAWERLVDALDGGRIDASLPGRTQLVSGPEGPAV 378

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +       S  A    L+ +     G+ + + G     G+   +   D+         
Sbjct: 379 YVDF----GHSPDAFEKTLAAVRRVTPGKVVMLFGA---DGDRDATKRHDMGRTAV-LGS 430

Query: 402 SHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVV 448
             + ++          A++  L            +      +   L     + +GD ++
Sbjct: 431 DILVVTDHHPRHEDPDAIRAVLVEGARRARPDAEILEFTPPERAILEAVKLVGEGDAIL 489


>gi|170720125|ref|YP_001747813.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida W619]
 gi|169758128|gb|ACA71444.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudomonas putida W619]
          Length = 496

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 69/458 (15%), Positives = 146/458 (31%), Gaps = 39/458 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++   + F A+ G   DG D I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRAVRAGDLFLAVPGAKVDGRDHISDALARGAAAVAYEQQGTHVLPITDV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +A            ++ +TG+ GKT+  +++  AL ++ +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDALGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R+       +                + +S     +     +   IA
Sbjct: 136 TLGTGFHGELQSGRLTTPDPIAVQSTLYDLKKAGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFEL-LKAKSHALGI 244
           V+T ++  HL     +E    A AK   + GL        +            +     I
Sbjct: 196 VMTNLSRDHLDYHGSMEAYEAAKAKLFAWPGLRCQVVNLDDGFGRRLAADFARRPSVDHI 255

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +T       +N+D  L   +   +   +   +     E               M   + +
Sbjct: 256 ETRLLSYSLENSDASLYCREAKFDDDGVRAIIVTAQGERTLRSQLLGRFNLSNMLAAVAT 315

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++  D             +   G+  R    +    ++D ++  +         VL  + 
Sbjct: 316 LMALDYSLDEILKVTPQLQGPVGRMQRLGGGEKPLVVVDYAHTPDALE-----KVLQALR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           PH  G+ + + G     G         L   ++      V ++  +            ++
Sbjct: 371 PHAHGQLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPQAIFNDIR 426

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               R   V +          + +S    DV+V+  K 
Sbjct: 427 PGFARPADVEFIAGRGEAIAHLIASAAASDVIVLAGKG 464


>gi|283856340|ref|YP_162561.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|292495095|sp|Q9RNM2|MURE_ZYMMO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|283775337|gb|AAV89450.2| UDP-N-acetylmuramyl-tripeptide synthetase [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 486

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 148/461 (32%), Gaps = 37/461 (8%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A             V G ++DSR +A    F A  G   +G DFI    +K      V  
Sbjct: 12  ASGYGLSPKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                +          ++   A  ++A          + A+TG+ GKT+  E+     + 
Sbjct: 68  VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 127

Query: 133 IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178
                             SY+  +  P  +  +    D    ++       S  G  ++ 
Sbjct: 128 TGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 187

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           +   +      T+ +  HL     +E   +AK  +F+         + + D         
Sbjct: 188 SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIA 247

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   +   G+   A  +L   +  S+   + + ++G+S ++    IG +   N L+
Sbjct: 248 HVQKRGLKLIDIGEKAEA-IRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNALV 306

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             G+V     D+   + AL++  P  GR +R   + N      +D ++  +        +
Sbjct: 307 AAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LRA 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
            +  + PH EG    V G     G             ++     HV ++     G     
Sbjct: 361 AIEALRPHTEGLLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAAT 416

Query: 414 L-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + K+ L  +                      GD+V++  K 
Sbjct: 417 IRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 457


>gi|324326561|gb|ADY21821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 146

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I   + F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLIKETIGNMDVEITGLEMDSRKITDGDLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKT 136
           GKTTT  +L   LS     
Sbjct: 114 GKTTTSYLLEKILSDYGYH 132


>gi|308048063|ref|YP_003911629.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
 gi|307630253|gb|ADN74555.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ferrimonas balearica DSM 9799]
          Length = 487

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 83/473 (17%), Positives = 154/473 (32%), Gaps = 39/473 (8%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + +  DLL       + +        + +DSR + P + F A+ G   DG DFI  A+  
Sbjct: 1   MSSLDDLL----APWMALDTGVEFQQLVLDSRRVRPGDCFVAVAGHQVDGRDFIDSAIAL 56

Query: 64  GAGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTT 121
           GA  V+ + D        + + V GV ++   L+ LA  A    ++ T+I +TG+ GKTT
Sbjct: 57  GAVAVLADADADGRQADRNGVIVVGVHNLSQRLSALALRAYPAATRPTLIGVTGTNGKTT 116

Query: 122 TKEMLTIALSSIKKT-YACIGSYNNHIGVPLTLARMPVDVDFGIFELG------------ 168
             ++    L+++           N   G  +       D      EL             
Sbjct: 117 VTQLCAQLLTALGHQAGVMGTVGNGLWGDLIPSVNTTSDAITVARELDRQAKSGAEAVAL 176

Query: 169 -MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +     +   + V T ++  HL     +   A AK ++F        +F   
Sbjct: 177 EISSHGLSQSRVAALPVQVGVYTNLSRDHLDYHGDMAAYADAKRQLFALPGLRHGVFNLD 236

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D++     +  S +L        G   +  +   +  +  +Q      +       ++  
Sbjct: 237 DETGSRWHRELSGSLLALGYSIQGARCDGAYLTVEGVEYHDQGVRARVVSSFGQGTLNSP 296

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +        L+      +      + +  LSV         R  C       TL+ +  +
Sbjct: 297 LLGAFNLANLLAALGALLSLGYSLSDL--LSVVPQLHSAAGRMECFGTDSTPTLVVDYAH 354

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              A        L+ + PH  G    V G     G    S    L    +     H+ ++
Sbjct: 355 TPDA----LSQALAALRPHCRGALWCVFG----CGGERDSGKRPLMAQAAEQGADHLIIT 406

Query: 408 GFH--VLALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +    A  D   +     +      E          +    GD+V++  K 
Sbjct: 407 ADNPRSEAFADIAAQMEAGLTGQAEVIEDRAAAVRRAFAQAQPGDMVLLAGKG 459


>gi|74316132|ref|YP_313872.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74055627|gb|AAZ96067.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 506

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 92/471 (19%), Positives = 162/471 (34%), Gaps = 55/471 (11%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
             +G+ P   VN    DSR  AP + F A  G   DG DFI  AV +GA  V+   D   
Sbjct: 27  ERLGLAPGELVN----DSRRAAPGKVFVAYPGDARDGRDFIPQAVAQGADGVLWEADHYQ 82

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
              +L+IP  GV  +   + ++A            +I +TG+ GKT+    +  ALS++ 
Sbjct: 83  WDPALAIPNAGVAGLKTRIGEIAAHVYGEPSRALHMIGVTGTNGKTSVAHWIAQALSALG 142

Query: 135 KTYACIGSYNNHI----GVPLTLARMPVDVDFGI----------------FELGMSHLGE 174
           +  A IG+  N        P  L          I                  + +S  G 
Sbjct: 143 RKTAIIGTVGNGFPSTGDTPAALTPALNTTPDAIELQQRLARYRGEGAVACAMEVSSHGL 202

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            +   +  R  +AV+T ++  HL     ++  A+AKA                  +  + 
Sbjct: 203 AQGRVNGCRFKVAVLTNLSRDHLDYHGDMDSYAAAKAR-----LFNWPDLEWAVLNVDDA 257

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +          +    +      R  +       + +Q      E+    +G   A 
Sbjct: 258 FGQRLEGETRPARVAGYGFQRGAVVARGLQLSQAGMHLALQTDWGDAEIDAPLLGRFNAA 317

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L  L  + +    +D A +AL+   P  GR    +    +    ++ + Y+  P +++
Sbjct: 318 NLLAALTALLVSDVKLDDACRALAQVTPPAGR---MQTLGGEAHPLVVVD-YSHTPDALE 373

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
             ++ L +I+  G GR I V G     G         L    +      +W++  +    
Sbjct: 374 KVLATLREIA--GGGRLICVFG----CGGNRDKGKRPLMGAAAGRGADEIWVTSDNPRHE 427

Query: 414 --------LKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   ++  L  +     V                   GDVV++  K 
Sbjct: 428 DPRAIIDDIRAGLAEAEAEGRVRVEAERARAIFEAVGGAHHGDVVLIAGKG 478


>gi|126665251|ref|ZP_01736234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
 gi|126630621|gb|EBA01236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Marinobacter sp. ELB17]
          Length = 494

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 77/476 (16%), Positives = 150/476 (31%), Gaps = 47/476 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + + LLQ      +  V    ++G+  DSR +   +AF A+ G H     +I  A++ GA
Sbjct: 5   SLNTLLQ--GVVVVPSVFDVTIHGLQTDSRKVRTGDAFVALAGAHTGPEHYIDDAIRAGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
            ++++ ++        S  +   V ++   L KLA         +  ++ +TG+ GKT+ 
Sbjct: 63  SVILLESEQAGECSERSGALIVPVPELKVRLGKLADRFFEYPSQRLQLVGVTGTNGKTSV 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +   L +      C        G+P TL          +                  
Sbjct: 123 TQYIAQLLQAA--GTPCGVLGTLGYGMPETLQPATHTTPDVVQANRVLAGILASGGRAAA 180

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +     +    AV T +   HL     +     AKA++    E+   + +N
Sbjct: 181 MEVSSHALDQGRIDRLTLTAAVFTNLTRDHLDYHGSMAAYGEAKAKL-FSREELRFVVIN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD F   L  +      +  +S  + +   +               +  +     +   
Sbjct: 240 VDDPFGRKLYHQLEGKCDRLRFSLHEPQAELWLKEFCAL-DNGFRAVLDGRWGEFTIEAP 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G   A N+L  +  V  L  DV      +    P  GR + +              + 
Sbjct: 299 LMGRFNASNVLAAVATVMALGVDVTQVQHGVRRLVPPAGRLQVFTAGDGARAVVDYAHTP 358

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A         + L+ + PH  GR I V G     G    S         +      V +
Sbjct: 359 DA-------LNNALAALRPHVSGRLICVFG----CGGDRDSGKRPEMAQQAENGADLVIV 407

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +         +    +         +     D+V+V  K 
Sbjct: 408 TDDNPRTETPSAITADIMAGFIAPEKIQLIHSRAQAIAAALALAGPDDLVLVAGKG 463


>gi|17547568|ref|NP_520970.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia solanacearum GMI1000]
 gi|21362686|sp|Q8XVI2|MURE_RALSO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17429872|emb|CAD16556.1| probable udp-n-acetylmuramoylalanyl-d-glutamate--2,
           6-diaminopimelate ligase (udp-n-acetylmuramyl-tripeptide
           synthetase) (meso-diaminopimelate-adding enzyme)
           (udp-murnac-tripeptide synthetase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 514

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 143/480 (29%), Gaps = 53/480 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G      DG   I  A++ G 
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGV 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+               +  VD +      LA             +I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPADAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
            + +  ALS   +  A +G+                     +  +LA +       +  +
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGTGFVDALVATGFTTPDAIQLQHSLADLHRAGARAVA-M 191

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S  G  +      R  IA+ T +   HL     + E   AKA +F        +    
Sbjct: 192 EVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRD 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           D +   LL      +        G+           +    +     +  +V        
Sbjct: 252 DAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRAT 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N L  LG++ +       A+  L    P  GR +R+            
Sbjct: 312 VHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGEDGPLVVVD- 370

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              Y   P +++  +  L+ I+    G+  AV G     G             ++     
Sbjct: 371 ---YAHTPDALEQTLRALAPITGARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLAQ 423

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           HV L+  +  +         + D +         E      L         DV+VV  K 
Sbjct: 424 HVVLTSDNPRSEDPQLILDMIADGMEDPRLAIQIEDRAAAILHAVRHADVHDVIVVAGKG 483


>gi|229496311|ref|ZP_04390031.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
 gi|229316889|gb|EEN82802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Porphyromonas endodontalis ATCC 35406]
          Length = 516

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 138/459 (30%), Gaps = 51/459 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT----DMVASIGSLS 82
           V  I+ DSR +     F AI G   DG  F+  A+  GA  +V       +  A    + 
Sbjct: 43  VEHITNDSRKVTSGSLFVAIPGAELDGWQFVPKALTAGAKYIVGEHVLSQEEKALFEQVD 102

Query: 83  IPVFGVDDVLG--ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                V       A    A+         ++ +TG+ GKT+T  ML      +      I
Sbjct: 103 ASYIAVSSAHEALAALAQALWHYPSKHLRLVGVTGTNGKTSTATMLHRLFERLGYKSGLI 162

Query: 141 GSYNNHIG---------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           G+  N IG               +   L RM       +  + +S     +     +   
Sbjct: 163 GTVENRIGNEIIPATHTTPDPIALAQLLYRMQQAGCSHV-FMEVSSHAAHQRRIGSLEFV 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             + T +   HL     ++E   AK   F+ L       +N DD    ++   + A    
Sbjct: 222 GGLFTNLTRDHLDYHGTMQEYIRAKKMFFDQLSPNAFALVNADDRNGSVMLQNTSAKK-- 279

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y++G    ADF+ +  +     + + +  +     +   G        ++     + +
Sbjct: 280 --YTYGLKSFADFKAKVVEGDFRGTELLLNDRSVW--IPLVGAFNAYNITLVYAAARLLL 335

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + D  ++ALS     EGR +        G        Y   P ++   +  +  + P
Sbjct: 336 PDLEQDVLLQALSTIETAEGRFEVISEGGRIGIV-----DYAHTPDALIKVLETIRPLVP 390

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
            G      V       G         +    +      + L+  +            +  
Sbjct: 391 QGGRVITVVGA-----GGNRDRGKRPIMAQEAFRRSDLLILTSDNPRDEDPQAIINEMMA 445

Query: 417 ALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
            L           +D               DV++V  K 
Sbjct: 446 GLTPEEQAQCLTNVDRRSAIATACRLATPRDVILVAGKG 484


>gi|331006872|ref|ZP_08330125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
 gi|330419323|gb|EGG93736.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium IMCC1989]
          Length = 556

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/524 (16%), Positives = 154/524 (29%), Gaps = 93/524 (17%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T   L QA+  +  G +    VN +SIDSR+I+  + F A++G    G  FI  A++K
Sbjct: 14  LGTL--LPQALSIYLDGAISAIPVNHLSIDSRAISKGDVFVALQGVSVHGEVFIPAAIKK 71

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSKATI----------- 110
           GA  ++  T            IPV  +  +   L+++A          +           
Sbjct: 72  GAVAILSATTASDVFVEYRDEIPVIFIPHLEQYLSEIAGNFYHHPTKKVPVIGITGTNGK 131

Query: 111 -----------------IAITGSVGKTTTKEMLTI------------ALSSIKKTYACIG 141
                            + + G++G    +  ++                   +      
Sbjct: 132 TSCAQIYAQLSAFNGSAVGVIGTMGYGACRPHVSHKNSQDKDFQDKGFQDKSSQNSHASQ 191

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE-----------------------LGMSHLGEIRFL 178
           S     G  L+L    +     I                         + +S  G  +  
Sbjct: 192 SRAGQPGYSLSLVSTGMTTPDAIAAQFICDELLHSNNASNTLGLESVVMEVSSHGLEQGR 251

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +  + A+ T +   HL     +  +A   A+       T  + +   D  F      
Sbjct: 252 VSALDINSAIFTNLTHDHLDYHGDM--VAYGNAKAKLFEMPTINLAIVNLDDEFSHELTT 309

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A  ++ I     + NAD  L   +    Q   ++    +   +    IG     N+L 
Sbjct: 310 KIASTVRVISYSIDNANADLYLDNIRYGHSQLLADLYCNNEIYALSTPLIGRFNLSNLLA 369

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L + S           A       +    R     NQ    ++ +  +   A      +
Sbjct: 370 VLSVFSQQQNFSQVVASAQY----LQPISGRMESVENQEGIQVVVDFAHTPDA----LDN 421

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
           VL  +S + +G    V G     G         L   ++     HV ++  +        
Sbjct: 422 VLQAVSEYVDGEVYCVFG----CGGDRDQSKRPLMAAVAERYADHVVVTNDNPRSENPTD 477

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +      + H    E  +    F       GD+VV+  K 
Sbjct: 478 IAQQVVQGFSSNNHC-VIEEREEAIRFAIHHAKIGDMVVIAGKG 520


>gi|222150881|ref|YP_002560034.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120003|dbj|BAH17338.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           homolog [Macrococcus caseolyticus JCSC5402]
          Length = 489

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 155/472 (32%), Gaps = 43/472 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            +LL  I+   +       +N + +DSR+   +  F A  G   D H FI + V++G  +
Sbjct: 4   SELLSKIKAKKLYGTFPEHINKVVVDSRAADSESVFVASHGYTVDSHKFIPNVVRQGCRM 63

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAITGSVGKTTTKE 124
           +VV+      I  L I    V D L A  ++           K T   +TG+ GKT+   
Sbjct: 64  IVVDH----YIEGLDIGQVVVRDTLQA-ARIFTQHVMDFPSHKLTTYGVTGTNGKTSVAT 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP--------LTLARMPVDVDFGI------FELGMS 170
           M+     ++    A +G+                     +   +   +        + MS
Sbjct: 119 MIHHLHRALNINSAYLGTNGFQYNEEVAKGANSTPETITLNQHIAHAVEQGAQSMAMEMS 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G     T  V   +A+ T +   HL     +E     KA +F  L            +
Sbjct: 179 SHGLALGRTDGVDIDVAIFTNLTQDHLDFHGTMERYGFHKALLFAQLGNDFKQQKYAVVN 238

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +    +      + + ++G  +N D +    K+        ++    ++E+    IG 
Sbjct: 239 GDDDYSKELIIASPREVITYGIEQNTDIKATNIKESIHGIAFTLETPDGNVEITCPYIGR 298

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               NML  L  +      +    +A     P EGR +     L          + +   
Sbjct: 299 FNIYNMLAALTALWTQGHALSALAEAAQSLPPVEGRLEVLDRNLPIDLVIDYAHTPDG-- 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
                   ++  + P   G+ I ++G M   GE   S   ++          +V  +   
Sbjct: 357 -----MNKLIDALEPFKRGKMIFLIG-MA--GERDLSKTPEMG--AVACRADYVIFTPDN 406

Query: 409 ---FHVLALKDALPRS-IHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   L DAL     H +Y              +    GD+VV+ +S  
Sbjct: 407 PANDDPRKLTDALESGATHTNYVSFLDRAEGIRHAIAMSEPGDMVVL-ASKG 457


>gi|120404500|ref|YP_954329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119957318|gb|ABM14323.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 497

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 140/462 (30%), Gaps = 48/462 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI---G 79
           P   V G+++  +   P + F A+ G    G  +   AV +GA  V+ +    A I   G
Sbjct: 17  PDVQVTGVTLRGQDAQPGDLFAALPGSRAHGGRYAAEAVGRGAVAVLTDAAGEAEIASRG 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-- 135
           +  +PV    D    L +LA A   R      +I +TG+ GKTTT  ++   L +  +  
Sbjct: 77  APDVPVLVHPDPRAVLGELASAVYGRPSQHLRVIGVTGTSGKTTTTYLVEAGLRAAGRVA 136

Query: 136 -----TYACIGSYNNHIGVPLTL---------ARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                    I       G+               +   VD  + E+  SH   +  +  +
Sbjct: 137 GLIGTVGVRIDGRQQPGGLTTPEAPELQALLATMLEQGVDTVVMEV-SSHALTLGRVDGV 195

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
               +   T ++  HL     +E+   AKA +F+    T                  + A
Sbjct: 196 S-FAVGGFTNLSRDHLDFHPTMEDYFDAKARLFDPACATHAARSVICVDDEWGRAMAARA 254

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T+ + G    AD++  + +     +   V +    +                  L 
Sbjct: 255 RRPVTVSTTG---PADWRAEQVRSAGGGAQDFVAVDPAGVHHGLEIGLPGGYNVANCLLA 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  +      +  +A          G+       Q F  L+D ++           +VL 
Sbjct: 312 IALLDA-VGVSPEQAAPGVRDATVPGRLESVDRGQPFLALVDYAHKPGA-----LRAVLQ 365

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
            +     GR   V G     G        +    ++      V ++  +           
Sbjct: 366 TLREQCTGRLAVVFGA----GGNRDQGKREPMGRVAAELADLVVVTDDNPRDEDPAVIRA 421

Query: 414 --LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             L  A      V                   GD+V++  K 
Sbjct: 422 AILAGAAGARAEVVEIGDRRAAIGHAAGWARAGDIVLIAGKG 463


>gi|260550825|ref|ZP_05825032.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
 gi|260406135|gb|EEW99620.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. RUH2624]
          Length = 499

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 149/465 (32%), Gaps = 57/465 (12%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           PQ   +G ++DSR +   + F A+    +        F   A+  GA  V+  T++  + 
Sbjct: 18  PQQPFHGFNLDSRKVEAGQIFIALTSYSQPEKT--RTFAEAALTNGALAVISETELGVAN 75

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
                  +   DV   + +       ++       IIA+TG+ GKTT   ++   L S +
Sbjct: 76  E------WVCSDVRQRMGEWQKRYLQQTDTVKPLRIIAVTGTNGKTTISRLI-AELISSQ 128

Query: 135 KTYACIGSYNNHIGVP---------------LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           +    +     +  +P                               L  S  G  +   
Sbjct: 129 QQRCAVMGTTGNGILPDLTPSTHTTLDALQLQNELHAYAKHGATFASLEASSHGLEQGRL 188

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     IAV + ++  HL     +E  A AKA +F+       +    D     ++K+  
Sbjct: 189 NGCDIEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFNSLKVAVINLDDAHADLMIKSAK 248

Query: 240 HALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +      I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++ 
Sbjct: 249 NNPAQPKILTYSLTQNTADYYITDLSYSLAGATFNLVGQQGSFAVESPLLGHFNVENLIA 308

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L             ++AL  F PK          +       + +  +   A     I 
Sbjct: 309 ALIAAEQAGF----DLQALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQ 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
           VL  +  H   +  AV G     G         L    +L   + V L+  +        
Sbjct: 361 VLKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQ 416

Query: 413 ---ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +K  +      +H          F+      GD+VV+  K 
Sbjct: 417 IFADMKQGIDFSGHRMHEIHDRREAIKFVTQQAQAGDIVVIAGKG 461


>gi|283768311|ref|ZP_06341223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
 gi|283104703|gb|EFC06075.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Bulleidia extructa W1219]
          Length = 491

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 157/457 (34%), Gaps = 41/457 (8%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G + +  +  +S DSR I     FF + G  +DGH F   A +KGA  +V +  +     
Sbjct: 19  GTIEEVNIEYLSQDSRDIQDNTLFFCVPGTTFDGHQFAKMAEEKGAVCLVASKHV----- 73

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS-----------------VGKTTT 122
            + IPV  V+DV+  +  LA+        ++  I  +                   K + 
Sbjct: 74  DVKIPVVYVEDVIKTMAFLAMRFYHDPSGSMSLIGVTGTNGKTTTTHIIRHLFEKNKKSC 133

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             + T  +   ++      +  + + +  +LA+M  +  F       SH   +  +   V
Sbjct: 134 GMIGTNGIWYHQEHIYTPNTTPDSLTLQKSLAKMKEEGVFICTSEVSSHALVMGRV-QNV 192

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
             ++AV T +   HL     + E   AK+ +F  L       +   +      K  +   
Sbjct: 193 DFNVAVFTNLTHEHLETHHTMAEYGMAKSLLFAQLGSGNNGKIAILNKDDTYAKVIASRC 252

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                Y   K  +A+F  +     + ++   +  QG    V+   IG    QN L  L  
Sbjct: 253 NATIWYYSTKDPSAEFYAKDMVYLASKTEFTLVFQGLEYPVISPLIGEFNVQNALAALAA 312

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   ++  I+ALS F   EGR +     L          + +            ++ 
Sbjct: 313 YYALERHLEKGIEALSSFSGVEGRMQTIENDLGIHAIVDFAHTPDG-------LEKAMAA 365

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDA 417
           +      R I ++G     G    S   DL  +   Y+  +V  +  +        +   
Sbjct: 366 LKKLNHKRIITMIGHDG--GNRDNSIRQDLGRIALEYS-DYVVFTSENPREEDPMKIMKE 422

Query: 418 LPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVVKS 451
           +   + VH+ E           + +    GD++    
Sbjct: 423 MVNGLEVHHYEFVKDRHKAIDRVVALGQKGDILFFTG 459


>gi|307262593|ref|ZP_07544224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872091|gb|EFN03804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 255

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/212 (21%), Positives = 78/212 (36%), Gaps = 32/212 (15%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI------- 83
           ++DSR +   + F A+KG   DG  FI  A+++GA LV+   D       L         
Sbjct: 25  TLDSRQVDEGDLFVALKGHQVDGRRFIQKAIEQGAALVLAEADEGQDEIELDAKFAKYNL 84

Query: 84  -----PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                 V  V ++   L+++A A       K T++ +TG+ GKTT+ ++L          
Sbjct: 85  DRTACKVVLVPNLARILSEIAGAFYANPSEKLTLVGVTGTNGKTTSAQLLAQW--HNLLG 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIRFLTH 180
                      G+   +          I                  + +S  G  ++   
Sbjct: 143 GKSAVMGTIGNGLYGKVQEAANTTGSAIEVQRNLADFVEMGADFCAMEVSSHGLAQYRAE 202

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +   +AV T ++  HL     +EE A AK  
Sbjct: 203 ALSYDLAVFTNLSRDHLDYHKTMEEYAQAKFR 234


>gi|226320606|ref|ZP_03796166.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234025|gb|EEH32746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 339

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 31  SIDSRSIAPQ----EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS-----IGSL 81
           S+DSR I         +FA KG   DG  F+ + +  G      + +  +        + 
Sbjct: 32  SLDSREIKDDNINDSLYFAYKGNKVDGFSFVKYLIDLGVKCFACSREHESECIKYLNDNE 91

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            +      +V+  L  LA     ++    IAITGS GKTTTKEML   LS   KTY   G
Sbjct: 92  GLVFLLTSNVIKLLQALASFLIEKTSFKRIAITGSNGKTTTKEMLYSILSKKYKTYKTWG 151

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + N+ IG+PL++ R+  + ++ +FE+G+S++GE+  L+ +++P I +IT I+ AH+  F 
Sbjct: 152 NLNSDIGLPLSILRVEGNEEYAVFEVGVSYVGEMDLLSQILKPEIVIITNISYAHMQAFK 211

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++ IA  K++I     +   +    D   +   +AK     +K +Y 
Sbjct: 212 ELQAIAFEKSKIIGKNIEIFVVNEMNDYCVYLEKRAKIANPNVKIVYF 259


>gi|194477172|ref|YP_002049351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
 gi|171192179|gb|ACB43141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Paulinella chromatophora]
          Length = 508

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/484 (14%), Positives = 142/484 (29%), Gaps = 52/484 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   LL+A        +    +  I  +S+ I P   F  + G +  G  F   A+  GA
Sbjct: 4   SLSSLLKATNLKFGVELIDRKIYAICTNSKKITPGSLFIGLPGTNVSGDSFCYSALDSGA 63

Query: 66  -------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGS 116
                    V+ +  +VA+  + +             + LA     +    +I   +TG+
Sbjct: 64  ITALGRKIAVISDLPLVANTLTNADKQIA-----HWTSLLATNFWQQPSRWMILLGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKK---------TYACIGSYNNHIGVPLTLA-----RMPVDVDF 162
            GKTT   ++    ++  +               S       P          + V+   
Sbjct: 119 NGKTTVTHLIEHLSTASGRPSALFGTLANRWPGYSATTKNTTPFADQLQAQLALAVEAGS 178

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I  + +S     ++     +   AV T ++  HL     +E    +KA +FE       
Sbjct: 179 QIGAMEVSSHALNQYRVMGCQFAGAVFTNLSQDHLDYHPSLEAYFESKASLFEHPLLANH 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L   +S        +  LG     S  +  +A+  +R            +        
Sbjct: 239 GPLAVINSDDLWGARLAQRLGSNCWRSSLRDFSAELTMRNLTFSVNGVSGIIVTPLGEGY 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADV----DTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +GY    N+L  +G++             A+K       +  R   Y   L+   
Sbjct: 299 FSSPMVGYFNLMNLLQAIGVLIQQKGFSLSSLLKAVKTFRGIPGRMERLIPYPNKLDLSP 358

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID ++  +          L       +G  I V G     G         +    + 
Sbjct: 359 SVIIDYAHTPDGLE-----KALIAARSFVKGSLICVFG----CGGNRDKRKRPIMGETAA 409

Query: 399 YNISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + ++            +  +   +P    V          +   S+    D++++
Sbjct: 410 RLADEIIVTSDNPRTENPEEIIKDILAGIPLGRKVLVEVDRSIAIMSSVSAASPNDLILI 469

Query: 450 --KS 451
             K 
Sbjct: 470 VGKG 473


>gi|289745330|ref|ZP_06504708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
 gi|289685858|gb|EFD53346.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 535

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502

Query: 450 KS 451
           K 
Sbjct: 503 KG 504


>gi|15609295|ref|NP_216674.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Rv]
 gi|31793338|ref|NP_855831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis AF2122/97]
 gi|121638040|ref|YP_978264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148661974|ref|YP_001283497.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis H37Ra]
 gi|148823367|ref|YP_001288121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis F11]
 gi|161350069|ref|NP_336687.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
 gi|224990534|ref|YP_002645221.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798777|ref|YP_003031778.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289554055|ref|ZP_06443265.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|306968293|ref|ZP_07480954.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308375793|ref|ZP_07445136.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308376926|ref|ZP_07668382.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308379133|ref|ZP_07485181.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|54037860|sp|P65478|MURE_MYCBO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|54041509|sp|P65477|MURE_MYCTU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|2104320|emb|CAB08669.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat
           e ligase MurE [Mycobacterium tuberculosis H37Rv]
 gi|31618930|emb|CAD97035.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis AF2122/97]
 gi|121493688|emb|CAL72163.1| Probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase MurE [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148506126|gb|ABQ73935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate MurE
           [Mycobacterium tuberculosis H37Ra]
 gi|148721894|gb|ABR06519.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis F11]
 gi|224773647|dbj|BAH26453.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320280|gb|ACT24883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 1435]
 gi|289438687|gb|EFD21180.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 605]
 gi|308345197|gb|EFP34048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu007]
 gi|308349468|gb|EFP38319.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu008]
 gi|308354099|gb|EFP42950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu009]
 gi|308358073|gb|EFP46924.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu010]
 gi|326903775|gb|EGE50708.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis W-148]
 gi|328458540|gb|AEB03963.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis KZN 4207]
          Length = 535

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 275

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502

Query: 450 KS 451
           K 
Sbjct: 503 KG 504


>gi|215403433|ref|ZP_03415614.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 02_1987]
          Length = 517

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 18  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 77

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 78  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 372

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 373 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 424

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 425 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 484

Query: 450 KS 451
           K 
Sbjct: 485 KG 486


>gi|13881902|gb|AAK46501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis CDC1551]
          Length = 581

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 82  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 141

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 142 IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 201

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 202 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 261

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 262 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 321

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 322 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 381

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 382 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 436

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 437 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 488

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 489 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 548

Query: 450 KS 451
           K 
Sbjct: 549 KG 550


>gi|254232316|ref|ZP_04925643.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|294993544|ref|ZP_06799235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis 210]
 gi|297731736|ref|ZP_06960854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN R506]
 gi|313659071|ref|ZP_07815951.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN V2475]
 gi|124601375|gb|EAY60385.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis C]
 gi|323719274|gb|EGB28417.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           murE [Mycobacterium tuberculosis CDC1551A]
          Length = 521

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 22  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 81

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 82  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 261

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 262 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 321

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 322 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 376

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 377 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 428

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 429 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 488

Query: 450 KS 451
           K 
Sbjct: 489 KG 490


>gi|297634747|ref|ZP_06952527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis KZN 4207]
 gi|306776408|ref|ZP_07414745.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|306789299|ref|ZP_07427621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|307080227|ref|ZP_07489397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
 gi|308370928|ref|ZP_07667049.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308373338|ref|ZP_07667556.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308374507|ref|ZP_07436318.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308215196|gb|EFO74595.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu001]
 gi|308330355|gb|EFP19206.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu003]
 gi|308334189|gb|EFP23040.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu004]
 gi|308338021|gb|EFP26872.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu005]
 gi|308341706|gb|EFP30557.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu006]
 gi|308361978|gb|EFP50829.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu011]
          Length = 517

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 18  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 77

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 78  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   AKA +F+        
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRAR 257

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 258 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 317

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 318 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 372

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 373 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 424

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 425 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 484

Query: 450 KS 451
           K 
Sbjct: 485 KG 486


>gi|62261015|gb|AAX77953.1| unknown protein [synthetic construct]
          Length = 477

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/438 (12%), Positives = 123/438 (28%), Gaps = 47/438 (10%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           E F A+KG   DG+ +I   + KG  LV+ ++            VF + ++   L+ LA 
Sbjct: 26  EVFVALKGLSTDGNKYIDSVLAKGVSLVLTDSHEFEDQK----RVFYIQNLKEKLSTLAK 81

Query: 101 AARLRSKA-TIIAITGSVGKTTTKEMLTIALS-------------SIKKTYACIGSYNNH 146
                 K   II ITG+ GKT+    +   L              +         ++   
Sbjct: 82  WFYDYEKPQNIIGITGTNGKTSISSYIAQFLDLSAQKTLLLGTNGNGIYPDLRESTHTTL 141

Query: 147 IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             +          +    + E+  S     +     +   +A+ + ++  HL     ++ 
Sbjct: 142 DILSLYKTISYYKNYQNLVMEV--SSHSLDQKRVEGLDFDVAIFSNLSHDHLDYHKTMDN 199

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AKA++                +  +    +   +    + +            K K 
Sbjct: 200 YFEAKAKL-----FQFKRLKKAIINIDDEYGQRLCNMTQVPVITVSLKSEYADVYIKPKS 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                              +          M + L   S+        I  L    P +G
Sbjct: 255 IEGIKTKFEMFFNGRFVGEYTTKLIGDFNLMNLGLSFASLDGVLDWDCILDLGNIKPVKG 314

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +      +         + +A           L  ++ +       + G     G   
Sbjct: 315 RMEVIELDNDIKIVIDYAHTPDA-------LEKALQTLNSYNPNNLWCIFG----CGGNR 363

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLF 436
            +    +   ++    S + ++  +            ++          +  + +    F
Sbjct: 364 DTSKRPIMAQIAEEYASKIVITEDNNRFESIENIFSDIRKGFKYPQKHIFITSREQAIRF 423

Query: 437 IQSSLVDGDVVVVKSSNS 454
              +   GD++++ +S  
Sbjct: 424 SIENANQGDIILL-ASKG 440


>gi|218671406|ref|ZP_03521076.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium etli GR56]
          Length = 256

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 19/213 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR +AP  AF A+ G   DG  FI+ A  +GA + + +  
Sbjct: 34  LEAQLEGPAGLLDISGLSSDSRHVAPGNAFVAVAGTKADGAGFIVDAAGRGAAVAIASQP 93

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           + A     SIPV  V +    L+  A     R   T++A+TG+ GKT+         +  
Sbjct: 94  VDA-----SIPVLAVKEPRRFLSIAAARFYGRQPETMVAVTGTAGKTSVASFTRQIWAHA 148

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLT 179
               A IG+             +       + +              +  S  G  +   
Sbjct: 149 GHAAAMIGTTGVVSPTRNEYGALTTPDPVSLHKLLAELADEGVTHASMEASSHGLDQSRL 208

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             V+   A  T +   H+     +E   +AK  
Sbjct: 209 DGVKLAAAAFTNLGRDHMDYHPTVEAYMAAKMR 241


>gi|213024666|ref|ZP_03339113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
          Length = 461

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 142/464 (30%), Gaps = 45/464 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVV 284
             D+     L +   A+ +        + +  + +    +       +         E+ 
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIE 300

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L+ L  +  L   +   +K  +   P  GR + +              
Sbjct: 301 SCLMGAFNVSNLLLALATLLALGYPLTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H  G+   V G     G         L   ++      V
Sbjct: 361 TPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIV 409

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQS 439
            ++  +            +   +  +  V   E          S
Sbjct: 410 VVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTNAIS 453


>gi|332654846|ref|ZP_08420588.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
 gi|332516189|gb|EGJ45797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ruminococcaceae bacterium D16]
          Length = 665

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 80/490 (16%), Positives = 141/490 (28%), Gaps = 59/490 (12%)

Query: 2   NPLWTFHDLLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
            P+ T  D L  +   ++       G+     V G++ DSR +AP   F   KG H+   
Sbjct: 3   IPVHTLGDYLDLLSEQNLLAAPIPDGLDRNQRVTGLTCDSRQVAPGTLFI-RKGAHFQ-T 60

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112
            F+  A  +GA   V   +         +P   + D   AL  LA         K  +I 
Sbjct: 61  KFLEMARDQGAMACVSQEEDTVP----GLPRIAITDTRKALAPLADRFYDHPSGKLKVIG 116

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACI----------------GSYNNHIGVPLTLARM 156
           ITG+ GK++T   +   L   +++                       +     PL L R 
Sbjct: 117 ITGTKGKSSTAYYMKSILDRYQESQGRGETGVVSSIDTYDGVERFESHLTTPEPLDLQRH 176

Query: 157 PVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKA 211
             +      E   + +S        +       A    I   H+S       E+  ++K 
Sbjct: 177 FANAAQTGLEYVTMEVSSQALKYHRSLCTEFAAACFLNIGYDHISPIEHPDFEDYFASKL 236

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +IF    +     +N D    + +   + A G   I    K   A        +   Q  
Sbjct: 237 KIF---AQAHISCVNLDCDHAQRVLEAAQAAGAPIITFSQKYPAAQVYASDVHKEDGQIL 293

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             ++    + ++     G    +N L    +   L          L              
Sbjct: 294 FTLRTPRYTRQMRLTMPGLFNVENALGAAALCEALDIPEWAVYDGLVRARVPGR----ME 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N     L    Y  N  S +   S +   + + E     V G     G+ +     D
Sbjct: 350 VYANADGRVLSIVDYAHNRLSFETLFSSVR--AEYPERELAIVFGCP---GKKAYDRRHD 404

Query: 392 LAEVLSLYNISHVWLSGFHV-----LALKDALPRSI-----HVHYSETMDGLFLFIQSSL 441
           L E  +      V+L+         L +   +  ++                        
Sbjct: 405 LGE-AAGAWCDRVYLTEEDSGEEDTLDICQEIRPNVEKGKARCRIIPNRGEAIRQAVLES 463

Query: 442 VDGDVVVVKS 451
               V+++  
Sbjct: 464 EKPTVLLLTG 473


>gi|312868464|ref|ZP_07728664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
 gi|311096209|gb|EFQ54453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis F0405]
          Length = 481

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/486 (15%), Positives = 150/486 (30%), Gaps = 66/486 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + G     +     + IS DSR I+    FF +KG ++   +++  A+  G G  V   D
Sbjct: 22  VNGEYYYHLEGTSFDAISYDSRKISASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
                  + IP   V+D+  A++ +A+        +  ++A TG+ GKTT        L 
Sbjct: 80  Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILK 134

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEI 175
              +            G     + +                  D    I E+  S    +
Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAEAVANDRTHLIMEV--SSQAYL 192

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               + +   + V   I+P H+        E+    K  + +    +  + +N D   F 
Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFS 249

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +LK +          S  +++  + +   +    + +                       
Sbjct: 250 VLKEQVEDQEHDFYGSQSENQIENSKAFSFSATGKLAGDYDIQLIGHFNQE--------- 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 +           +              G+        G    ID ++N +    
Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406
                +LS +  H  G    VLG     GE  +         H ++   L+  + ++   
Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINL 463
                LA+ + +   I   V      +       + +    D V++        Y+++N 
Sbjct: 409 --EDPLAIAEEISSFITRPVEKIADREEAIQRAMATTSKPEDAVIIAG-KGADCYQIVNG 465

Query: 464 LLEEFP 469
           + EE+P
Sbjct: 466 IKEEYP 471


>gi|121606311|ref|YP_983640.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
 gi|120595280|gb|ABM38719.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polaromonas naphthalenivorans CJ2]
          Length = 496

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 149/475 (31%), Gaps = 45/475 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L T       +    IG         +S DSR     + F A  G   DG +++  A+  
Sbjct: 3   LHTPEQAACWLHERVIGT--------LSADSRKAGQGDGFIAWPGAATDGRNYVNAALAA 54

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
           GA   +V      + G     V     +  A   +A A       +  + AITG+ GKT+
Sbjct: 55  GASACLVEHAGAQAYGFNDDRVATYAGLKAATGPMAAAYFGAPSEQLQVTAITGTNGKTS 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNN--------------HIGVPLTLARMPVDVDFGIFEL 167
           T   L  AL  + +    +G+                    +     R   D  F    L
Sbjct: 115 TAWWLAQALGRLGRKCGIVGTLGIGEPGAMVANGLTTPDPVLLQQQLRRFADEGFAACAL 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S +G         R  IAV T     HL   + + +   AK  +F        I    
Sbjct: 175 EASSIGLEEGRLDGTRIQIAVFTNFTQDHLDYHASMPDYWRAKQMLFNWPGLRAAIINVD 234

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    E   + + A     +++   +  A  Q +   Q +     +V   G+   +    
Sbjct: 235 DSRGLE--LSAALAGTSLDVWTLSCAGPARLQAQAICQGAHDLSFDVVEGGERHRISTPM 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +   N+L  +  +  +   +  A+ A +   P  GR +                 Y 
Sbjct: 293 VGLYNVSNLLGVMASLRAMDVPLADAVAACADLLPVPGRTETLAVPGLPLVVID----YA 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  ++ L+ ++    GR   V G     G    +    L    +  N   + ++
Sbjct: 349 HTPDALEKVLTALNPVAQGRGGRLWCVFG----CGGDRDAGKRPLMAAAAEKNADQLVIT 404

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +         +   L R    H  E                DVV++  K 
Sbjct: 405 SDNPRSEDPVTIIGQMLKGLSRPQVAHVQEDRRAAIAHALQLAQPQDVVLLAGKG 459


>gi|281306936|pdb|2WTZ|A Chain A, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306937|pdb|2WTZ|B Chain B, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306938|pdb|2WTZ|C Chain C, Mure Ligase Of Mycobacterium Tuberculosis
 gi|281306939|pdb|2WTZ|D Chain D, Mure Ligase Of Mycobacterium Tuberculosis
 gi|303324784|pdb|2XJA|A Chain A, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324785|pdb|2XJA|B Chain B, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324786|pdb|2XJA|C Chain C, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
 gi|303324787|pdb|2XJA|D Chain D, Structure Of Mure From M.Tuberculosis With Dipeptide And
           Adp
          Length = 535

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 148/482 (30%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S            R  +   T ++  HL     + +   A A +F+        
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAXASLFDPDSALRAR 275

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                          + A    T+ +  +  +             Q +  +   G    +
Sbjct: 276 TAVVCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHI 335

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N L+ L I+  +    + A+  L          +  R         L  
Sbjct: 336 GIRLPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LAL 390

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P ++++ ++ L+    H + R   V G     G+        +  + +      
Sbjct: 391 VDYAHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQL-ADL 442

Query: 404 VWLSGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++  +             L  A          E            +    GDVV++  
Sbjct: 443 VVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAG 502

Query: 450 KS 451
           K 
Sbjct: 503 KG 504


>gi|197116884|ref|YP_002137311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
 gi|197086244|gb|ACH37515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter bemidjiensis Bem]
          Length = 505

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 137/428 (32%), Gaps = 37/428 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  +    +       +  +  DSR +AP   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLAQLLNCLASPELSGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V +           + V  V D   A++ +A A          ++ ITG+ GKTTT
Sbjct: 61  AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG-----VPLTLAR-----------MPVDVDFGIFE 166
             ++   +       A +G+ +   G      P T              +       + E
Sbjct: 117 TYLVEGIMEQAGVPAAVLGTISYRFGETNIPAPNTTPESVDLQAILRELVDHGARGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224
           +  SH  E   +   +   +A+ + +   HL     +E    +K  +F            
Sbjct: 177 V-SSHALEQHRVDGCL-FDVALFSNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +    +        + ++  +  AD  + + +   +     +      + + 
Sbjct: 235 RRAVVNLDDPFGPRIAEKAAAPVLTYSMTGKADISVAEAEFSVDGIRCRLNTPVGEISLA 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +G    L    +     +       GR         +   T++ +
Sbjct: 295 SELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGR---LERVETEEGITVLVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A      +VLS +S     R I + G     G         +   ++       
Sbjct: 352 YAHTGDA----LENVLSTVSELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403

Query: 405 WLSGFHVL 412
            ++  +  
Sbjct: 404 VITSDNPR 411


>gi|299065603|emb|CBJ36775.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Ralstonia solanacearum CMR15]
          Length = 514

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 141/481 (29%), Gaps = 55/481 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGA 65
           +L  ++ H            ++ D+R +   + F A   G      DG   I  A++ G 
Sbjct: 19  VLDWLRAHVPAGAD------LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGV 72

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTT 122
             V+          +    +  VD +      LA             +I +TG+ GKT+ 
Sbjct: 73  SAVLAEAHGYVVPANAPARILPVDGLSELAGPLAAQWYAVPGPDALRVIGVTGTNGKTSC 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +  ALS   +  A +G+     G    L          I                  
Sbjct: 133 SQWIAQALSRQGERCAVVGTLGT--GFVDALVATGFTTPDAIQLQHSLADLHRAGARAIA 190

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +      R  IA+ T +   HL     + E   AKA +F        +   
Sbjct: 191 MEVSSHGLEQGRADGTRFDIALFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINR 250

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            D +   LL      +        G+           +    +     +  +V       
Sbjct: 251 DDAAGGRLLAGLRAGIEAVEYGIDGEAAAQRGAGHWLRATNVRAHRTGTTFDVDGSFGRA 310

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G     N L  LG++ +       A+  L    P  GR +R+           
Sbjct: 311 TVHSPMVGLFNVSNQLGVLGVLLMAGVPWQDALARLEKLQPVSGRMERFGGEDGPLVVVD 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y   P +++  +  L+ I+    G+  AV G     G             ++    
Sbjct: 371 ----YAHTPDALEQTLRALAPITEARGGKLWAVFG----CGGDRDPGKRPQMGAIAERLA 422

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            HV L+  +  +         + D +         E      L         DV+VV  K
Sbjct: 423 QHVVLTSDNPRSEDPQLILDMIADGMEDPYAAVQIEDRAAAILHAVRHADVHDVIVVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|222099423|ref|YP_002533991.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
 gi|221571813|gb|ACM22625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase
           [Thermotoga neapolitana DSM 4359]
          Length = 490

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 86/487 (17%), Positives = 156/487 (32%), Gaps = 54/487 (11%)

Query: 5   WTFHDLLQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T   +   ++     +       ++GIS  +  +   + F   KG  +D H+ I   ++
Sbjct: 1   MTISTIASILKDQILKVNAPMDLEISGISNHTSRVKKGDLFICRKGEKFDSHEIIPEVIE 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL------------------ 104
           KG         +V    +   P   V D      KLA                       
Sbjct: 61  KG-----AVAVVVEREVNFDAPSILVFDSRYFEAKLASLFFEDPWKDTLTFGITGTNGKT 115

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
            +   I  +  S+G   +   LT  L ++                 L+  +   D     
Sbjct: 116 TTTLMIYHMLTSMGVKGSA--LTTVLKNVLGKTYYEDITTPDAITVLSAMKENKDGGGRF 173

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F L +S    ++     VR  + + T I+  HL      E    AK  +F+ L+  G   
Sbjct: 174 FALEVSSHALVQKRVEGVRFDVGIFTNISRDHLDFHGTFENYLKAKLHLFDLLKDDGFAV 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN   S                  +FG S+NA+++L   +   E +   ++     ++V 
Sbjct: 234 LNESLSDA--------LHRRVRKVTFGTSRNANYRLGNIEVSWEGTSFVLETPDGFLKVF 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG   A N    +  +  L  D     ++L  F   EGR +  + A   GF  ++D 
Sbjct: 286 TRAIGDFNAYNAAAAIAALHQLGFDPKELAESLESFTGVEGRFEVVKAAKKSGFNVIVDF 345

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +++ +         +L  +    +GR I V G     G  S      +   +       +
Sbjct: 346 AHSPDALE-----KLLKNVRKISKGRVIVVFGA----GGNSDRGKRPMMSRVVSELADVM 396

Query: 405 WLS-----GFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            L+     G      +  L   + ++                 +    GD VVV      
Sbjct: 397 ILTTDDPRGEDPEQIMEDLIKGVDKNKPYLVLFDRKEAIETALTIANRGDTVVVAG-RGH 455

Query: 456 GFYRLIN 462
             Y++I+
Sbjct: 456 ERYQIID 462


>gi|217076877|ref|YP_002334593.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
 gi|217036730|gb|ACJ75252.1| UDP-N-acetylmuramyl pentapeptide synthase [Thermosipho africanus
           TCF52B]
          Length = 514

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 130/356 (36%), Gaps = 13/356 (3%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MP 157
           A     R     +A+TGS GKT+TK  L   ++   K+     SYN  +G+  T+   + 
Sbjct: 158 AKRKISRLNPLTVAVTGSYGKTSTKYYLHHLVAEHYKSLMTPESYNTTMGITKTIREKLD 217

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  I EL  +       L  L++P I+++T+I   H   F  ++ I           
Sbjct: 218 KSHEVFIVELAENDNYGYSKLLELIKPQISILTSIGIQHFEEFESLDNIIQNFKNFILDE 277

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                I  N DD   + +             +  +                 ++  +   
Sbjct: 278 RSGKKIIANIDDENIKNVLENIDTKKEIITCAINEKNAQYKVEELKISKDGANFAIITPN 337

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +      +  GY   +N+L+ +     L   V+  I+        + R +     +   
Sbjct: 338 NQKFYFETNVYGYENIRNLLLAIVASFELKVPVEEVIERAKNIVKPKHRLE----IVRND 393

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID+++N+NP   K A+  L+      +   I V     E+GE     H  + + ++
Sbjct: 394 TITVIDDTFNSNPKGFKMALEYLALFENKRK---ILVTPGFVELGEKEDEEHYKIGKEIA 450

Query: 398 LYNISHVWLSGF-HVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            Y +  V+L G      +   L  S     +   E ++ +    ++ L  GDVV+ 
Sbjct: 451 KY-VDVVFLIGEKRTEKIYKGLIDSNFEGKIFIVEDLNEVIEKFKTFLQPGDVVLF 505


>gi|146342503|ref|YP_001207551.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. ORS278]
 gi|146195309|emb|CAL79334.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           [Bradyrhizobium sp. ORS278]
          Length = 486

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 79/472 (16%), Positives = 138/472 (29%), Gaps = 40/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
              HDLL    G   G+ P      V+G++ DSR++ P + FFA+ G   DG  FI  AV
Sbjct: 1   MKLHDLL----GDQAGLDPRVAAVEVSGLAADSRAVRPGDLFFALSGTKTDGTRFIAAAV 56

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                  +      A  G L +P   + +   AL   A     R  ATI A+TG+ GKT+
Sbjct: 57  A---AGAIAVAGHEAPAGDLPVPFVSLPNPRRALALAASRVFPRQPATIAAVTGTSGKTS 113

Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL-- 167
                     S+             +   +    +  P       ++      G+  L  
Sbjct: 114 VAAFTRQIWQSLGHNAASIGTVGLISDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  ++    VR      T ++  H+     +    +AK  +F  L   G   +  
Sbjct: 174 EASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLVHYLNAKLRLFRDLVPPGGPAVIS 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D         +       + + G   N      +    +   + +         +    
Sbjct: 234 ADHECSAEVIAAADARGLRLMTVGTHGNGAGAGIRLVAAAVDGFAQQLELQHCGRITFLR 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +    A  +   L    +                  EG   R           +  +  +
Sbjct: 294 LPLVGAFQIENALVAAGLAIGTGSDPQAVFEALEKLEGAKGRLELVGEHNGAPIFIDYAH 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              A        L  + P+ + + + V G     G    S    L   ++      V ++
Sbjct: 354 KPDA----LAKALHALRPYAQRKLVVVFGA----GGDRDSGKRPLMGEIAAAGADRVIVT 405

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +          L  +                 S L  GD +V+  K 
Sbjct: 406 DDNPRSENPAAIRAAILAAAPGAREIGDRAEAIRVAISELQPGDALVIAGKG 457


>gi|254424802|ref|ZP_05038520.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
 gi|196192291|gb|EDX87255.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Synechococcus
           sp. PCC 7335]
          Length = 534

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/469 (16%), Positives = 152/469 (32%), Gaps = 50/469 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPV 85
           V G+S +S++I P   F  + G   DG +F   A++KGA   +V+  ++AS  +     V
Sbjct: 41  VTGLSTNSQAIEPGMVFIGMPGTRVDGGEFWQSAIEKGAIAALVSPSVLASKPNTSDALV 100

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-------- 135
               ++     +LA +   +      I+ +TG+ GKTTT  ++   L+  ++        
Sbjct: 101 LTTSNIAKVCAELAASFYAQPAKAMNIVGVTGTNGKTTTTHLIEYFLNHAQQKTAILGTL 160

Query: 136 TYACIGSYNNHIGVPLTLARMP------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                G     +        +          +     + +S     +  T  +   +AV 
Sbjct: 161 YTRWPGYEKIAVHTTPFSIDLQAELASAHQAECQTVVMEVSSHALAQHRTWSIPFEVAVF 220

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL     +++   AKA +F      G   +N  D + + L  +       T   
Sbjct: 221 TNLTQDHLDYHKDLDDYFEAKALLFSPDYLKGHAIVNQKDPYGQKLIERIGKHKTLTYD- 279

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
               ++AD      +         +     +       +G    +N+L  +G    L   
Sbjct: 280 -ITDRSADLYTSDLRYSPIGVSGTIHTPAGNASFSSPLVGQFNLENLLAAVGAALHLGVS 338

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID-------ESYNANPASMKAAI----- 357
           +D  + AL  F    GR +R + +       +++       ++      S+         
Sbjct: 339 LDQIVVALPEFKGVPGRMERVQISTGMAAQAVVELDTVAEPDTVAEQDISVIVDYAHTPD 398

Query: 358 ---SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
              + L    P  EGR I V G     G             ++      V ++  +    
Sbjct: 399 SLENALKAARPFIEGRLICVFG----CGGDRDRSKRPKMGRIAYEQSDFVIVTSDNPRTE 454

Query: 413 ---ALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               + + +   I                      +   GD +V+  K 
Sbjct: 455 SPEQILEDVVAGIEGPLDEEQVIGDRAAAIRSAILNAQPGDGIVIAGKG 503


>gi|121611474|ref|YP_999281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
 gi|121556114|gb|ABM60263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Verminephrobacter eiseniae EF01-2]
          Length = 517

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 149/455 (32%), Gaps = 42/455 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---V 85
            +  DSR IAP + F A  G   DG   +  A+ +GA   +V    VA+    + P   +
Sbjct: 35  SLHSDSRLIAPGDGFIAWPGASTDGRAHVADAIARGATACLVEQAGVAAFAFPAAPGASL 94

Query: 86  FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             +  +  A   +A     +      ++A+TG+ GKT+T   L  AL+   K+  C  + 
Sbjct: 95  ASLPGLKAAAGPIAAQWFDQPSRQLDVLAVTGTNGKTSTAWWLADALNGRAKSPVCALAG 154

Query: 144 NNHIGVPLTLARMPVDVDF----------------GIFELGMSHLGEIRFLTHLVRPHIA 187
              +GVP  L    +                        +  S +G  +      +   A
Sbjct: 155 TLGLGVPPVLETAGMTTPDPLRLQRALRQFVDRGLSACAIEASSIGLEQGRLAGTQIRAA 214

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + T     HL     +     AK  +F+       +    D +  +L      A  +  +
Sbjct: 215 IFTNCTQDHLDYHGSMAAYWRAKRALFDWPGLQAAVINIDDPAGAQLHAE--LAGRVPDL 272

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S      A    R     ++     V+       +    IG++  QN+L  L  +  L 
Sbjct: 273 WSISTQGPARLAARDITLAAQGLRCTVREGAAPQRLTTRVIGHYNLQNLLAVLATLRSLG 332

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  A++A +   P  GR ++   A            Y   P ++  A+  L  ++   
Sbjct: 333 WPLAEALQAGAGLQPVPGRMQQLALAGQPLVVVD----YAHTPDALAKALQALRPLAARR 388

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            GR   V G     G    +    L    +      + L+  +  +         +   +
Sbjct: 389 AGRLWCVFG----CGGDRDAGKRPLMGAAAEQQADRLLLTSDNPRSEDPDAILRQILQGI 444

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R   V              +     DV+++  K 
Sbjct: 445 SRRRAVRTEPDRAAAIAQAVAEAAPADVLLIAGKG 479


>gi|152980734|ref|YP_001354710.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|166224779|sp|A6T2G3|MURE_JANMA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|151280811|gb|ABR89221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 508

 Score =  108 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/486 (15%), Positives = 145/486 (29%), Gaps = 46/486 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+ L T   L   +        P+     ++ DSR IA  + F A  G   DG  +I +A
Sbjct: 1   MSILTTTA-LASILD-WLAANAPKAE---LASDSRRIAQGDVFVAYPGDEADGRSYIANA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +++GA  V+             +    +DD+     ++A A           +AITG+ G
Sbjct: 56  IERGAQAVIYEAAGCTWDAEWDVAHLAIDDLKEHAGEIAAAYYAHPDRSMFTVAITGTNG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNN---HIGVPLTLARMPVDVDFGI----------- 164
           KT+  + L  ALS + +  A IG+        G   +           +           
Sbjct: 116 KTSCAQWLGSALSRLGQPTAVIGTLGVGIFTNGGHGSFDVTGYTTPDAVLLQRSLVNVSN 175

Query: 165 -----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGL 217
                  +  S +G  +     +   +A+ T     HL     +     A A    + GL
Sbjct: 176 LGATALAIEASSIGLHQGRLSGMHFDMALFTNFTRDHLDYHGDMAAYEEAKAMLFDWPGL 235

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +       +              A    T Y+    K     + +           V   
Sbjct: 236 QHAVINLDDAMGVRLVQRLQSRQADVGITGYTLSDKKIDGIAVLRATDIRSNQSGTVFQL 295

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S              N+   LGI+ IL A       A++          R +      
Sbjct: 296 ESSAGNTQVKTQLVGQFNVSNVLGIIGILLAKGIALQDAVNAVEALTAVPGRMQQLGGGE 355

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++ + Y   P +++  ++ L  ++    G    V G     G+        + +   
Sbjct: 356 APLVVID-YAHTPDALEKTLATLRSVANDRGGELWCVFG---CGGDRDPGKRPQMGK--V 409

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVV 447
                H+ ++  +            +   +    +     E      L+        DV+
Sbjct: 410 SMAADHIVVTTDNPRNEEPANIIGDIVAGITAPKNAPQIIEDRASAILWAGRHAARQDVI 469

Query: 448 VV--KS 451
           ++  K 
Sbjct: 470 LLAGKG 475


>gi|313114885|ref|ZP_07800383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622762|gb|EFQ06219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 492

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 148/472 (31%), Gaps = 45/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +            ++ I  DSR  AP   F  I G   D H+F      KG
Sbjct: 1   MKLEQLLEGVPFTLAQGSLDTEISDIIYDSRKAAPGLLFVCIVGTQRDSHEFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         K T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPSRKMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L +             Y            P +       R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKETANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V  ++ V T ++P H+      +     ++   +  ++     +N D
Sbjct: 180 VSSQGLMMDRVAGVHYNVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E L           + ++G+++ AD++   ++      ++ V+      + +   +
Sbjct: 239 DENTEALLE----GHTCKLITYGRAEQADYRETGFELLRTHDFLGVKFHVTGKDEMDVKV 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++   L     +   +    +A+     K     R         FT++ + Y  
Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDQAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S ++ ++ L    PH     + V G     G             +         L+ 
Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG----CGGNRSKLRRYGMGEICAKMADFSILTE 405

Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +                +    P +  V           +      +GD++
Sbjct: 406 DNNRFEKVEDILADIRVGMNKGNPDAKFVEI-PDRLDALHYAVDHAQEGDLI 456


>gi|320093653|ref|ZP_08025533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979401|gb|EFW10883.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 529

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 84/487 (17%), Positives = 152/487 (31%), Gaps = 44/487 (9%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
              +        + G+++ S    PQ  F AI G    G  F   A + GA  V+ +   
Sbjct: 36  GAETAWADLGTRIAGVTVSSDDCEPQWLFVAIPGLSQHGIRFARAAKEAGAVAVLTDAAG 95

Query: 75  V--ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL 130
              A    L +PV  VDD    +  LA A           +A+TG+ GKTTT  ++  AL
Sbjct: 96  ASRAVSEGLGLPVVVVDDPRSHVAALAAAVYGHPARDLVTLAVTGTNGKTTTSYLMRAAL 155

Query: 131 SSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIR 176
           +++    A  G+    +G              V      +  +   G   +  S      
Sbjct: 156 AAVHPRAALCGTVETRVGPVSFEAERTTAESPVVQRFLALARECGEGAAVIETSAHALSL 215

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                V   +A  T +   HL  +  +E   +AKA +F   E      +  DD +   L 
Sbjct: 216 HRVDGVVFDVAAFTNLQHDHLDYYGDMEGYFNAKALLFT-PEHAKRAVVCVDDEWGRRLA 274

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQN 295
           A +               +   +         ++   +        EV    +G    QN
Sbjct: 275 ASAPIPVTTVSALTDAPAHWRVRAAHPDPSIGRTVFTLVDPDGTGHEVRMPILGEVNVQN 334

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             + L         +D A++AL       GR ++           ++D ++         
Sbjct: 335 TAVALVSAVAAGVPLDGALRALEAAPQIPGRMEKVNPVPGNQPLVVVDYAHTPEALEW-- 392

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--- 412
               L        GR   V G   +  + S+  H      ++      +W++  +     
Sbjct: 393 ---TLRSTRELTAGRLHIVFGTDGDR-DASKREH---LAGIAAAGADVLWVTDENPRTED 445

Query: 413 --ALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
             +++D L R I                          +   GD V++       +Y+ +
Sbjct: 446 PQSIRDYLLRGIASQRPSMADVTEVVTCRRDAVRRAILAAQPGDTVIITG-KGAEWYQEV 504

Query: 462 NLLLEEF 468
             +   +
Sbjct: 505 EGIKHRY 511


>gi|229196429|ref|ZP_04323176.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
 gi|228587066|gb|EEK45137.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus m1293]
          Length = 147

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 31/147 (21%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R++    +  FT+I++++NA+P+SMKAAI  L +++ + +     V+GDM 
Sbjct: 1   MQQINITQMRFQFLTAKTGFTIINDAWNASPSSMKAAIETLQKLNAYKKKM--IVIGDML 58

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLF 436
           E+G+  +++H ++ ++L+  +I +V+  G     + +   ++     V   +    +   
Sbjct: 59  ELGKKGETYHREIGKMLNEESIQYVFTYGELAKIVAEEARKNYHAGKVQSFDNKAEIAEE 118

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINL 463
           +   +   DVV++K S       ++  
Sbjct: 119 VLKVVTKKDVVLLKGSRGMALEEIVQK 145


>gi|119773490|ref|YP_926230.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
 gi|119765990|gb|ABL98560.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shewanella amazonensis SB2B]
          Length = 487

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 140/478 (29%), Gaps = 49/478 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +    DLL               V+   IDSR +     F A+ G   DG  ++  A  K
Sbjct: 1   MMLLKDLL----APWFHYAGTESVHAPVIDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAK 56

Query: 64  GAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVG 118
           GA   +V+TD     G +S           +   ++ +A       R K  ++ +TG+ G
Sbjct: 57  GAAAALVHTDDPDEHGKVSYEPGLCIAFFQLNRQVSAVARQYYALTRGKLRVVGVTGTNG 116

Query: 119 KTTTKEMLTIAL--------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           KT+  +++                  + +      +G+        +            +
Sbjct: 117 KTSVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G ++     V   +AV T ++  HL     ++  A+AK  +F     +  + 
Sbjct: 177 CAMEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAFGSLSARVI 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D    +       A G    +S      AD++              +   G    + 
Sbjct: 237 NLDDKVGEQWFDGMGCATG----FSCLGHAKADWRFENAHFHHAGFSANLVWPGGQKPLE 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  L  ++ L   V   + A +      GR + +              
Sbjct: 293 CRLLGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRMECFPRKDGVSLVVDYAH 352

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A           L     H EG    V G     G         L    +      +
Sbjct: 353 TPDA-------IEQALKAARHHCEGALWIVFG----CGGDRDKGKRPLMAEAAEAFADCL 401

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+  +            +K  L                    S    GD++++  K 
Sbjct: 402 VLTSDNARSEDPAVILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKG 459


>gi|184156311|ref|YP_001844651.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227655|dbj|BAG28171.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 511

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%)

Query: 13  AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
            + G      P+   N     +S DSR++     FF  KG  +D   ++  A  +GA + 
Sbjct: 22  IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79

Query: 69  VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ GKTT+ 
Sbjct: 80  MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSV 139

Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167
                 ++              +          H+  P       + +  VD       +
Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S     +     +   I V   I+P H+S       E+  + K+EI +          
Sbjct: 200 EVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284
                +   L  K+H LG + I        AD+Q R         +     L     +  
Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L  L + + +    +     L+                ++       +
Sbjct: 317 VMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+ A+ + +       +GR I V+G     G  ++S   D+   LS Y    +
Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426

Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             S          +   +  +I      V  +           +    GD  +  ++  
Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484


>gi|254491343|ref|ZP_05104523.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463472|gb|EEF79741.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 513

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 165/484 (34%), Gaps = 52/484 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK---GPHYDGHDFILHA 60
           + +   LLQ +    +  + +  +  IS+DSR +     F A+             +  A
Sbjct: 8   MQSLTLLLQDVVAEGV-ELQEYMLTDISMDSRRVTAGGLFLALAKDEAERQ---KHLHQA 63

Query: 61  VQKGAGLVVVNTDMV------ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112
           + KGA  V+++ D        A +    +  + V ++      +A     +     T+IA
Sbjct: 64  LDKGAFAVLIDADKPLTQTETAMLNEAVVSAYPVKNLSQQAGSIAARFYQQPSQHMTVIA 123

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVDVD 161
           +TG+ GKT+  + +   L +  K    I                    P+++ R+    +
Sbjct: 124 VTGTNGKTSVSQFIAQVLEADGKPCGVIGTMGAGRLSDLEMTGMTTPDPVSMQRLLAGFE 183

Query: 162 FGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
               E   L  S     +   + V  ++AV+T ++  HL     + + A AK  +FE   
Sbjct: 184 LEGCEYVVLEASSHALEQGRLNSVDINVAVLTNLSRDHLDYHHTMADYAKAKQRLFEMGS 243

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +  +    D     L+ A         + ++  S  AD      +   +    ++ + G
Sbjct: 244 VSRAVINACDSFGRTLMNA---LRSDIQLLTYSSSDQADVSASAIQCHRDGMQFDLAIHG 300

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +  +     +G     N L TLG++  +      A +ALS      GR + Y        
Sbjct: 301 QQQKTTLPVLGRFNVDNALATLGVLLSIGYQPSQARQALSQCRAVAGRMEAYGVDGQPML 360

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 + +A   +++     L+Q     +G+   V G     G         L   ++ 
Sbjct: 361 VIDYAHTPDALEQALRTLRGHLNQ-----QGKLWCVFG----CGGDRDKGKRPLMGKIAE 411

Query: 399 YNISHVWLSGFHVL-----ALKDALPRSI---HVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
                + ++  +       A+ + +       H    E        +  S     D+V+V
Sbjct: 412 IEADEIIITDDNPRTEDHQAIAEDILAGCQQPHAIRVELDRKVAISYAISHAAPNDIVLV 471

Query: 450 --KS 451
             K 
Sbjct: 472 AGKG 475


>gi|52142903|ref|YP_083925.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976372|gb|AAU17922.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 147

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 14/151 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG-----HDFILH 59
               +L   +            + G+ +DSR I     F  + G   DG     H F+  
Sbjct: 1   MKLKELANLLLVKETIGDMNVKITGLEMDSRKITNGNLFICVSG--IDGFLEDRHQFVED 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           AV+ GA  ++V  D+     ++ IP   V D   A+  +A        +K  +I ITG+ 
Sbjct: 59  AVKNGAVALIVERDV-----NIEIPKIIVKDARYAMAVIASHFYGYPSNKMKLIGITGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           GKTTT  +L   LS        +       G
Sbjct: 114 GKTTTSYLLEKILSDYGYHTGLMDITRGLWG 144


>gi|224477766|ref|YP_002635372.1| hypothetical protein Sca_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422373|emb|CAL29187.1| hypothetical protein SCA_2284 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 675

 Score =  108 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 94/403 (23%), Positives = 169/403 (41%), Gaps = 10/403 (2%)

Query: 51  YDGHDFIL-HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            DG+  I     + G  L++  +       +  IP   V + + A+  LA+  R   +  
Sbjct: 62  NDGNSQIPKDVKEIG--LIITES--YVEGLAKKIPQIVVKNSIKAMKILALYIRKNYRNP 117

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS+GK++T+ MLT AL+ +K       S N    + L + ++  + D  IFE  +
Sbjct: 118 IVCITGSMGKSSTRLMLTAALAPLKVQENRGNS-NTRSAIYLHMCKLAANPDIAIFETSL 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + L     +  +++P IA++T I  AHLS     EEIA  K+ IF GL + G    N D 
Sbjct: 177 NALNNRGNMASVLKPDIAIVTGIGSAHLSTIGSTEEIAEYKSRIFAGLNEKGIAIYNADT 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                LK  +     K      ++  AD    +     +   ++              + 
Sbjct: 237 LHNAFLKDVALKHTSKVYGYSTENSKADLYTEEITPIRKAVKVKTNDGTHF---TVPSVS 293

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             M +N L  L  +  L  +VD  +  LS     +   +           TL+D+++NA+
Sbjct: 294 NGMVENALAVLLTLKHLDINVDEKLDNLSNTQLFKKVLEFKNIHSATENATLLDDTHNAS 353

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +M  AI      S   EG +I  LG + ++GE + + H  L  +L      ++     
Sbjct: 354 LPAMINAIQAFDSQSKFFEGHKIIALGQISDLGEQTDNVHAKLVPILEQSKADYILCMDE 413

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +  + + + +  H+ +      L   ++  +    +V++KSS
Sbjct: 414 PLRKVVNKV-KGKHITWYRNAQLLLQDLRLLINQDALVLMKSS 455


>gi|297583946|ref|YP_003699726.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Bacillus selenitireducens MLS10]
 gi|297142403|gb|ADH99160.1| cytoplasmic peptidoglycan synthetase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 451

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 159/444 (35%), Gaps = 25/444 (5%)

Query: 10  LLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L+Q++     G +P  FV +G+  +  +I   + F  +KG  +DGH  I  AV+ GA   
Sbjct: 9   LIQSVSKEMSGDIPLTFVAHGVQTNPENIVTGDLFVPLKGEMFDGHQLIEAAVENGAAAS 68

Query: 69  VVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +   ++ V      + P+F V+D   A+ ++A         T +A+TG   +  T+ +L 
Sbjct: 69  LWRISEPVPKTLDRTFPLFFVEDPERAVEEMAEQYLFDIDPTRVAVTGDYTRHLTRTVLA 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L    + Y    +    +    ++  MP D D  +F++       +R  + L+ P +A
Sbjct: 129 GMLKKNYRVYLPEETLGEPLPFFSSVLSMPDDTDVILFDVPSRTDDIVRSASELIIPQLA 188

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+      H        +IA     I  G++KTGT+F++ +       +      G  + 
Sbjct: 189 VLC----CHRDQHEA--DIAGHAVHIEAGMKKTGTVFVDRNRWQDVDWQTDLVEYGEDSD 242

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F           +  +  +   +        ++     +      ++L  LG    L 
Sbjct: 243 SLF---------YPEQVREEDGRVLFSIKGIMFLDFSLPWLMKDHIMSVLAALGPAIHLG 293

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              ++  + +S    ++   +                   +         S+      H 
Sbjct: 294 MGAESVAQGVSELTMEDFDFETCHSKDGTVVLVDHGRGLKSGLK-----YSLGMLKHMHH 348

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HV 424
             RR+ ++ +  +   L +    ++        I+ +   G     ++ AL  +    + 
Sbjct: 349 FDRRVLIVDEGFQSNPLKEKIIHEVFADELRDPITDLITIGEKAFWIRSALNNAGITLNG 408

Query: 425 HYSETMDGLFLFIQSSLVDGDVVV 448
            + +T       +   L D  +V+
Sbjct: 409 GHYQTHHEAMPELTELLKDEALVL 432


>gi|313637026|gb|EFS02597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria seeligeri FSL S4-171]
          Length = 440

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 138/424 (32%), Gaps = 43/424 (10%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           F   A + GA  VV    +      ++IPV  V D   A+  LA            ++ I
Sbjct: 1   FAKKAEELGAVAVVAEKPV-----DVTIPVIYVRDTKRAMAMLANYFYGSPTQALKLVGI 55

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------- 166
           TG+ GKTT   ++   +    +    IG+    IG  +   +        + E       
Sbjct: 56  TGTNGKTTVSHLVEQIVRESGEQTGLIGTMYRKIGDEILETKNTTPDSLTLQETFREMLL 115

Query: 167 -------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA--EIFEGL 217
                  + +S    ++   +     +AV   ++  HL     +EE A AK+      G 
Sbjct: 116 RGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYAYAKSLLFAQLGN 175

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
               +       +  +    +        + +FG  +NADF+    +  S  S   +   
Sbjct: 176 SYHASNPKIAVLNADDEESVRMQTATAAHVITFGIKENADFRATNIEITSHGSTFNLTTP 235

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               ++    IG     N+L  +     L   ++ AI  +      +GR +      +  
Sbjct: 236 AGKFKLKIKMIGNFSVYNVLAAIATSYALHIPLENAIATVEAIPGVKGRFELVNAGQDFP 295

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                  + +         ++VL  I      R   V+G     G+  +     +A++  
Sbjct: 296 VIVDYSHTPDG-------LLNVLQTIDEFANNRVFVVVG---CGGDRDKGKRPQMAKIAV 345

Query: 398 LYNISHVWLSGF--------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            Y  + V+ S           +  +   +P S      E       +  S    GDV+++
Sbjct: 346 QYATNPVFTSDNPRSENPRTIIEDMIKGVPESDSYVVHENRRDAIQYAISEAEAGDVILI 405

Query: 450 --KS 451
             K 
Sbjct: 406 AGKG 409


>gi|293401981|ref|ZP_06646121.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304639|gb|EFE45888.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 523

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 138/361 (38%), Gaps = 19/361 (5%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + K A   R      II ITGS GKT+ K +L   +       A   SYNN +G+  T+ 
Sbjct: 166 MQKAAKKLRDHENLCIIGITGSYGKTSVKNVLYQLMKEDWYALATPQSYNNRMGITKTIL 225

Query: 155 R-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +    +  + E+G  H+ EI  L   VRP   ++T +   HL+ F  +E I   K ++
Sbjct: 226 EYLQPLHELFLCEMGADHVHEIEELMKFVRPQYGIVTAVGQQHLATFHSMENILHEKMQM 285

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E L + G  FLN D+ +               +  FGK   AD++        E S   
Sbjct: 286 IEQLGREGIGFLNADNEWIRS----YPLRVHCRVIWFGKDMLADYRYGNVSYDEEGSRFT 341

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +  +  +       +G H   N+   + +   L    D   K          R ++ +  
Sbjct: 342 ITHKAVAHVFHTRLLGEHNLMNITCGVAVAHQLGMSWDALGKQCEQLPYVTHRLEKKQ-- 399

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                +TL+D++YNANP   + A+ VL ++        I +   + ++G      +  L 
Sbjct: 400 --MADYTLLDDAYNANPKGARYALDVLREMPQQR----IIITPGLIDLGYAQDKENELLG 453

Query: 394 EVLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++   +  V L G      +K  L         +H    +   F  +Q        V+
Sbjct: 454 AYMAAC-VDDVILVGPTQTEKIKKGLIAKKFPIERLHVVTNIQEAFACLQQIKEKDAYVL 512

Query: 449 V 449
           +
Sbjct: 513 L 513


>gi|222149141|ref|YP_002550098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium vitis S4]
 gi|221736126|gb|ACM37089.1| UDP-N-acetylmuramoylalanyl-D-glutamate-26- diaminopimelate ligase
           [Agrobacterium vitis S4]
          Length = 486

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 142/473 (30%), Gaps = 42/473 (8%)

Query: 5   WTFHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
               DL       + G   G V    + GI+ DSR + P   F A++G   DG  F+  A
Sbjct: 1   MKLRDLASGDFGDLTGPLDGPVGDVEITGITADSRKVEPGMLFVALQGVKADGAGFVADA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           V +GA  V+       S   +++P    D    AL  LA         T++A+TG+ GKT
Sbjct: 61  VARGAAAVLS-----GSHLDIAVPALVTDQPRHALALLAARVYSGQPETMVAVTGTAGKT 115

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------E 166
           +         +      A IG+             +       +                
Sbjct: 116 SVASFTRQIWAYAGLASAQIGTTGVISPTRSDYGSLTTPDPVALHQLLADLAQEGVTHAA 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     VR   A  T +   H+     + +  +AK  +F+ L   G+  + 
Sbjct: 176 MEASSHGLDQSRLDGVRLAAAAFTNLGRDHMDYHPTVADYMAAKMRLFDTLLPKGSPAVI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  +     +        + + G++ +     R      +Q                 
Sbjct: 236 FADDEWSAEAIRVARQAGHDVRTVGRAGDFLSLKRVEHFRHKQIAEIHHQGAIFE----V 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +       +   L    +  +    A  AL      +G   R           L    Y
Sbjct: 292 DLPLAGDFQIANALVSAGLAISTGVEASLALKALEKLQGASGRLELVGQANSGALAYVDY 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  ++    + P   GR I V G     G         +   ++      V +
Sbjct: 352 AHKPDALEKVLTA---VRPFTSGRIIVVFG----CGGDRDKGKRPIMGEIADRLADIVIV 404

Query: 407 SGFHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +   A      +  +                 + L  GD ++V  K 
Sbjct: 405 TDDNPRSEVAATIRSEVMAATPKGIEIGDRAQAIRAAVAMLATGDTLIVAGKG 457


>gi|227514324|ref|ZP_03944373.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087296|gb|EEI22608.1| possible UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 263

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 16/273 (5%)

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           F   ++IA AK EI  GL + GT   + D+     L  +  A   +   +FG+  + D  
Sbjct: 1   FGSRDKIADAKMEITHGLAEDGTFVYDGDEP----LLRERAAKLSQQTKTFGRQLDDDLY 56

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +     V  Q          +G +   N L  + +  ++        +AL  
Sbjct: 57  ATSVNPDVDHVSFTVN-QWPDEVFTIPLVGEYNVNNALAAMTVGKLMHVTPANMKQALQN 115

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               E    R           ++ + YN+NP ++K  ++ L+ I     G+R+AVLGDM 
Sbjct: 116 ---VELTENRSEWVAGANGERILSDVYNSNPTAVKEVLATLATIPV--AGKRVAVLGDML 170

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI------HVHYSETMDGL 433
           E+GE S   H  L + +   ++  V+L G  + ALKDAL ++       H + +     L
Sbjct: 171 ELGEASARLHAGLCDAIMNGHLDEVYLIGGEMGALKDALLKAGYPAGQLHYYQAAQRKAL 230

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +Q+SL  GDVV++K+S+     +++  L +
Sbjct: 231 TDALQASLTTGDVVLLKASHGLHLEKVLAQLEK 263


>gi|149190162|ref|ZP_01868438.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
 gi|148836051|gb|EDL53012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Vibrio shilonii AK1]
          Length = 428

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 77/436 (17%), Positives = 148/436 (33%), Gaps = 37/436 (8%)

Query: 1   MNPLWTFHDLL-----QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M    T   LL     +     S   +    V+ + +DSR+I   ++F AI G   DG  
Sbjct: 1   MLTSLTLAKLLKPWISEMAGSVSYLSLDDIVVSNLELDSRAIQQGDSFVAIIGHTVDGRL 60

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSKATII 111
           FI  AVQ GA  V+   D     G +     +P+  +  +   L+ +A     + +  +I
Sbjct: 61  FIERAVQAGATSVLAQADSEHKHGEVTYIGEVPIIHLYQLDTLLSVIAARLY-QYQQQVI 119

Query: 112 AITGSVGKTTTKEMLTIAL-----------SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            +TG+ GKTT  +++   +           ++       +    N  G  + + R+   +
Sbjct: 120 GVTGTNGKTTITQLIAQWIGLLGDKAAIMGTTGNGFLDQLEEAKNTTGSAIDVQRILAKL 179

Query: 161 DFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           D        + +S  G ++     V   + + T ++  HL     +E   +AK  +F G 
Sbjct: 180 DQQGAHYTAMEVSSHGLVQGRVAAVPFKLGIFTNLSRDHLDYHGTMEGYEAAKKLLFTGH 239

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                +    D      L  +S A+ +       +           K       +E    
Sbjct: 240 HCEHAVLNIDDVVGRRWLSERSDAIAVSVEGR--QEGERGLWATTVKYSDSGISLEFDGY 297

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                +    IG   A N+++    +  L  D++   +      P  GR + ++      
Sbjct: 298 FGQGNLQAPLIGQFNASNLMLAFASLLALGFDIEHLQQTAPKLQPVLGRMELFQTTSKPK 357

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                  + +A           L  +  H EG+   ++G     G         +   ++
Sbjct: 358 IVVDYAHTPDA-------LEKALLALRVHCEGKLWVIVG----CGGDRDKGKRPMMAAIA 406

Query: 398 LYNISHVWLSGFHVLA 413
                HV LS  +  +
Sbjct: 407 ERLADHVILSDDNPRS 422


>gi|325925691|ref|ZP_08187069.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
 gi|325543907|gb|EGD15312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas perforans 91-118]
          Length = 491

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 137/455 (30%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+           +  
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139
               V  +   L  +A     R      ++ +TG+ GKT+T ++L  AL+ +        
Sbjct: 74  DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187
                         +   + +P       +  +      + +S     +     V   +A
Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     + +  +AKA++F        +    D     L  A   AL    +
Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALRAIGV 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S     +AD ++       + + +   L  +      H           +     ++  
Sbjct: 254 SS---RAHADARVSAQALQLDHNGINFALNIQGQVHPVHSPLLGRFNVDNLLAVAGALWA 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +   A  A  +   +   G+  R     G   ++ +  +   A        LS +  H 
Sbjct: 311 MEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSHA 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G    +        ++        ++  +            +    
Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGF 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R                        D+V++  K 
Sbjct: 423 ARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|326795775|ref|YP_004313595.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
 gi|326546539|gb|ADZ91759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Marinomonas mediterranea MMB-1]
          Length = 496

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 150/479 (31%), Gaps = 56/479 (11%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVF 86
           +  DSR ++ +  F A+ G   +G D++    +KG    VV       + +  S  + + 
Sbjct: 27  VKTDSRKVSSETLFVALPGVSSNGWDYLSLVAEKGCRYAVVPTYVAKGLIASNSTDLNII 86

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY--- 143
           G DDV   L+ +         + +I +TG+ GK++    +     ++  + A IG++   
Sbjct: 87  GSDDVYALLSSIVKKTIGSFPSHLIGVTGTNGKSSVSYYIAQLADAMGLSGAIIGTFGVG 146

Query: 144 ------NNHIGVPLTLARM------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                 +     P  L  +        D    +     SH  +   +  +     AV T 
Sbjct: 147 KLNNLESAKQTTPDVLTMLKTLAQFNQDGVDLVAFEASSHALDQDRVAGI-EIDTAVFTN 205

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E  A         L+            +   +   S          +G
Sbjct: 206 LTQDHLDYHGTMESYA-TAKRKLFRLDTLKHAVFCSKSDYCNFMAEDSKGDKSY----YG 260

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +  + DF +R     S      +  +     V    +G     N +  L  +  L  D  
Sbjct: 261 ERPSDDFVIRDVTYHSLGCSFLLLTKSGHYSVELPLMGEFNVDNAVAALASLWPLFDDKV 320

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             I +L+      GR +R   +       ++ +  +   A        L  ++ H +G  
Sbjct: 321 ALISSLTSLKGAPGRMERVTLSEGANVPVVLVDYAHTPDA----LSVALKALAVHSKGPI 376

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP-----R 420
             V G     G              +L     V L+  +  +      ++DAL       
Sbjct: 377 TCVFG----CGGDRDKGKRPEMMRAALDLADKVVLTTDNPRSEIPSEIMQDALSGVAECE 432

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS-----------SNSCGFYRLINLLLE 466
              V   E       F  ++    ++V+V  K            S+       +N L +
Sbjct: 433 RQRVILDEDRRSAIEFAIATASINEIVLVAGKGHETYQEIGGVKSHFDDREEALNALKK 491


>gi|289677696|ref|ZP_06498586.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 302

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 11/302 (3%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + ELG S +GEI +   L +PH+A+IT    AH+  F G + I  AK EI EGL+  GT
Sbjct: 4   AVIELGASRVGEIAYTVSLAKPHVAMITNAGTAHVGEFGGPDRIVEAKGEILEGLDAGGT 63

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN +D  F + + ++    + T      + +        +         +     +  
Sbjct: 64  AVLNLEDKAFPIWRKRAGNRNVLTFALTDSAADVYASELS-RDARGCPAFTLNSPLGTAR 122

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  + +G H   N L        +   ++  +  L+   P +GR      +       +I
Sbjct: 123 VQLNLLGTHNVSNALAAAAASCAMGVPLEGIVTGLNSVQPVKGRAVAQIASNGT---RVI 179

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++    +   +S
Sbjct: 180 DDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-GKVS 234

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++  G  +     A     H ++  +   L   + +       +++K S S     ++ 
Sbjct: 235 ALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEHVVA 292

Query: 463 LL 464
            L
Sbjct: 293 AL 294


>gi|113955311|ref|YP_729850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
 gi|123031834|sp|Q0ICH2|MURE_SYNS3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|113882662|gb|ABI47620.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9311]
          Length = 503

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 140/477 (29%), Gaps = 40/477 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL ++       +    +  I+ DSR + P   F  + G   DG  F   A+  GA 
Sbjct: 5   LHALLHSVGLPVPQGLSDAVIESITCDSRCVGPGSVFIGLPGGRVDGGSFWPKALVDGAS 64

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAI------TGSVG 118
            V++ +          S  V  V D +     +LA A        I  I        +  
Sbjct: 65  AVLIGSAAAATLPPEQSDAVLVVPDPVARWAGELAAAFWNHPSERIGLIGVTGTNGKTTT 124

Query: 119 KTTTKEMLTIALSSIKKT----YACIGSYNNHIGVPLTLARMP------VDVDFGIFELG 168
               + + +                 G             R+             +  + 
Sbjct: 125 THLIEHLSSACGRPSALFGTLLNRWPGHSVTATHTTAVADRLQAQLAEAYAAGAQLTAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTIFL 225
           +S     +      R   AV T +   HL     +     AKA +F      ++     +
Sbjct: 185 VSSHALDQHRVAGCRFSGAVFTNLTQDHLDYHETMASYFEAKARLFAPPLVADQGAQFVV 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD + + L  +      ++  S G S +A+  +      S      +           
Sbjct: 245 NIDDPWGKHLAERLGDRCWRSSLSEG-SAHAELTMSDLVMGSSGVEGRLLSPLGEGSFQS 303

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  +G++      ++  ++A+S F    GR +R       G    +   
Sbjct: 304 PLLGRFNVMNLLQAVGVLLQQGLPLEALLEAISTFRGVPGRMERVVVDGKGGELPTVLVD 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P  + +A++      P  +G+ I V G     G             ++      V 
Sbjct: 364 YAHTPDGLSSALNAC---RPFADGKLICVFG----CGGDRDRGKRSQMAAIAAELADAVV 416

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            + + +P    +                    D+V++  K 
Sbjct: 417 VTSDNPRTEDPQQILNDVVEGIPSGTALTVMLDRAEAIAGAIKDAGSHDLVLIAGKG 473


>gi|257456336|ref|ZP_05621533.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446422|gb|EEV21468.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 358

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/220 (22%), Positives = 73/220 (33%), Gaps = 22/220 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               V+ +S DSR +    AFFA+ G H DG  FI  AV KGA  V+    + A      
Sbjct: 37  ADVTVHSLSYDSREVREGAAFFALPGVHTDGSKFIDAAVAKGAVTVIHEKPLPAYQAH-- 94

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           I    V DV  A+   A A           I +TG+ GKT+T + +   L    K     
Sbjct: 95  ICYVQVPDVRAAMAAAAAAFFDEPSQDLITIGVTGTEGKTSTVDFIWQLLRLAGKKAGFS 154

Query: 141 GSYNNHIGVPLTLARMPV------------------DVDFGIFELGMSHLGEIRFLTHLV 182
            + +  +G                              ++ + E     L         V
Sbjct: 155 STVSFSLGDEPVANPAHQTTPESITVQERLARMRDNGCEYAVVEASSHGLSPRTARLLHV 214

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           R    +   +   HL      E+    KA +F  L+    
Sbjct: 215 RFDAGIFMNVTQEHLEFHGTFEQYRYDKANLFRALDTHAH 254


>gi|307700879|ref|ZP_07637904.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
 gi|307613874|gb|EFN93118.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Mobiluncus mulieris FB024-16]
          Length = 516

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 138/474 (29%), Gaps = 39/474 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           +  A+ G   G  P G V G  ID+R +   E F A+ G H  G  F   A+ +GA  V+
Sbjct: 25  IADAVGGTRHG--PVGQVRGAVIDNRDVRGGELFIAMPGLHVHGAKFTPDAISRGAKAVL 82

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
            +   +  + +  +PV  V DV  A  + A  A         +  +TG+ GKTTT  +L 
Sbjct: 83  TDAAGLDLVANPEVPVITVPDVPHAAGRAAAMAWGNPANHLRLWGVTGTNGKTTTTYLLR 142

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSH 171
             L  + K  A +G+    IG     + +                   ++  + E+    
Sbjct: 143 HLLHRVGKLAALVGTVEVAIGKRSVPSNITTPQAAQVQAIAASTVAAHLEDLVLEVSSHA 202

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           LG  R     +R  +A    +   HL     +E+    KA +F    ++    +  DD +
Sbjct: 203 LGLGRVD--PLRFRVAGFCNLTHDHLDFHHSMEDYFQTKASLFT-ERRSDRQVIIVDDDW 259

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  +   +G     +   +             +                    +   
Sbjct: 260 GRRLAEQLERMGQHDFVTLSTTGFPADWQASITPDTSGYSHLDLRAFDGKTASVQVLMPG 319

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVF-HPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +   L IV ++T    +                 R                     
Sbjct: 320 RFNAVNTALAIVMLVTGLSVSPRMLNGDILRHLCSHPIRVEVPGRMELIANQPRVIVDFA 379

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  A  S+L  + P   GR   V G   +           +   ++       +L+   
Sbjct: 380 HNPGALKSLLETLRPSTAGRLRLVFGGTGQ----RDLEKRPILGRIAGELADFTYLTDDD 435

Query: 411 --------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNS 454
                   + A   A        Y E                  D VV+     
Sbjct: 436 PHEEDPDKIRAEVRAGLEDFPGKYVEIAGRSAAIKQAIQEAKPQDTVVIAG-RG 488


>gi|326774508|ref|ZP_08233773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326654841|gb|EGE39687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  107 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 148/483 (30%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLIAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+        ++  + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163
           T+   M    L   ++                      S  +    P     +    D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L  + +G +          + V T +   HL +   +E    AK  +F+G     
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++            ++    +AD++       +  S   +   G+  
Sbjct: 239 CAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R + +        
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQISGGTSVIVD 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S  +   VL+ I     GR I V G     G    +        ++  + 
Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403

Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               L+  +        + D + + I                     +     D+V++  
Sbjct: 404 DLCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAG 463

Query: 450 KSS 452
           K S
Sbjct: 464 KGS 466


>gi|269219538|ref|ZP_06163392.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210780|gb|EEZ77120.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 525

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 145/490 (29%), Gaps = 50/490 (10%)

Query: 4   LWT-FHDLLQAIQGHSIGIVP-----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           L+T    L  A+                 V  ++ DSR   P + F A  G    G  F 
Sbjct: 10  LFTQLDALAAAVGATVDVGDGGPEARNAAVESVTSDSRQARPGDLFAATPGEKVHGAAFA 69

Query: 58  LHAVQKGAGLVVVNTDMVA----SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATII 111
             AV+ GA  V+ +          +G  S+PV  VDD   A+ K A              
Sbjct: 70  ASAVEAGANAVLTDAQGRDILRRDLGGRSVPVLVVDDPRAAVGKAAALILGEPAADLDSY 129

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE-- 166
           A+TG+ GKTTT  M+   L ++ +    IG+       + VP  L     D         
Sbjct: 130 AVTGTNGKTTTAYMVESILGALGRKPGLIGTVEIRLAGMSVPAHLTTPMPDELQSYLAFH 189

Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                    +  S    ++  +  VR  +A  T +   HL     +E    AKA +F   
Sbjct: 190 RRGGGTDVVMETSSHALVQGRSDPVRFTVAGFTNLTQDHLDFHGTMERYYQAKASLFTPE 249

Query: 218 EKTGTIFLNYDDSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                +     +    LL     +            G     D  +       E S   +
Sbjct: 250 RARNAVVSVDGEYGRRLLAECAPRLEGEVAALAVDSGLPDLPDGVVGWKALAMEGSSFVL 309

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +            +             ++ +        + A ++              L
Sbjct: 310 ESTDGRRLATSTSLPGDFNVANAALAAVMVMTAGYSPDEL-ARALPAGINPAVPGRMEVL 368

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N     ++D ++N         ++ +  + P  EGR + + G     G+  +     +  
Sbjct: 369 NARPRVIVDFAHNTEA-----LVNAMKALRPSTEGRLVVLTGSA---GDRDKGKRPAMGA 420

Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDG 444
            ++ Y    V+++           ++ A+          V              +   + 
Sbjct: 421 AVARYG-DFVYITDDDPHNEDPAVIRAAVIEGTRGFDTPVVEIADRSQAIDAAIAEASER 479

Query: 445 DVVVVKSSNS 454
           D +++     
Sbjct: 480 DTILLAG-RG 488


>gi|74310704|ref|YP_309123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Shigella sonnei Ss046]
 gi|73854181|gb|AAZ86888.1| meso-diaminopimelate-adding enzyme [Shigella sonnei Ss046]
          Length = 497

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 71/480 (14%), Positives = 143/480 (29%), Gaps = 49/480 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
             ++                   +PV  +  +   L+ LA            ++ +TG+ 
Sbjct: 61  AAIIAEAKAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTN 120

Query: 118 GKTTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------- 166
           GKTTT ++L      + + +       N  +G  +              E          
Sbjct: 121 GKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGAT 180

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S  G ++     ++   +V T ++  HL     +E   +AK  ++        I
Sbjct: 181 FCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAI 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSME 282
               D+     L     A+ +        + +  + +          + +         E
Sbjct: 241 INADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGE 300

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +  H +G     N+L+ L  +  L   +   +K  +   P  GR + +            
Sbjct: 301 IESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDY 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             + +A           L     H  G+   V G     G         L   ++     
Sbjct: 361 AHTPDA-------LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFAD 409

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++  +            +   +  + H    E              + DVV+V  K 
Sbjct: 410 VAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 469


>gi|258654055|ref|YP_003203211.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
 gi|258557280|gb|ACV80222.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nakamurella multipartita
           DSM 44233]
          Length = 533

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 148/479 (30%), Gaps = 52/479 (10%)

Query: 9   DLLQAIQGHSIGIVPQGF-VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           ++            P G  + GI++ ++ + P + F A+ G    G  +   A+++GA  
Sbjct: 3   EVAALTGARLERPAPTGERLTGITLRAQDVRPHDLFAALPGSRAHGAGYAGQALERGAAA 62

Query: 68  VVVNTDMVASIGSLS---IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           V+ +      +       + +  V+     L  +A            ++ +TG+ GKTTT
Sbjct: 63  VLTDRAGAELLAGTDLGSVALLVVERPREHLGAIARQLYGDPSRRLAVVGVTGTSGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFELGM- 169
             +L  AL++     A IG+    I              P   A + V V+ G+  + M 
Sbjct: 123 CYLLEAALAADGSRSAVIGTVQTRIDGQITPSALTTPEAPDLQALLAVMVERGVGAVAME 182

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S            R  +   T ++  HL     +E+   AKA +F+G    G   ++ D
Sbjct: 183 VSSHALSLGRVSGTRFAVGAFTNLSQDHLDFHHDMEDYFRAKAMLFDGRA--GAHVIDVD 240

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +   L A+             +   AD+ +      +      V       +V     
Sbjct: 241 TEYGARLAAEHPEALTV----SDRPGAADWSVEMVTLAANGVQHVVLSGPGKRQVTLDLA 296

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                      + +  +     D    A ++       G+  R    Q F  ++D ++  
Sbjct: 297 IPGAFNVGNAAVALACVDALGRDVQQAADALAT-VVVPGRMERVDAGQDFLAVVDYAHKP 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
              +      VL  I     G  I VLG     G    +    +    S      + ++ 
Sbjct: 356 GAVAA-----VLDAIGQGLAGPLIVVLGA----GGDRDTGKRPMMGAESAARADVLIVTD 406

Query: 409 FH----------VLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +             L  A P    R   V                   G  VV+  K 
Sbjct: 407 DNPRSERPADIRAQVLAGAAPVADRRPCQVLEIGDRRAAIRRAVQLAGTGGAVVIAGKG 465


>gi|148284402|ref|YP_001248492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
 gi|146739841|emb|CAM79765.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Orientia tsutsugamushi str. Boryong]
          Length = 489

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 74/458 (16%), Positives = 154/458 (33%), Gaps = 49/458 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+I ++S  P + FFA+ G    G+DFI  A+  GA L++ +   + S  +    V 
Sbjct: 15  IRNIAITAQSAEPNQIFFALPGISRHGNDFIDIALANGASLIITDQAHITSYSN----VI 70

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V ++   +  +      +    ++A+TG+ GKT+             +  A IG+    
Sbjct: 71  VVKNITLVMKDIVNYLYPKFPKYLVAVTGTDGKTSVVNYFQQLCMLAGEQAASIGTLGVI 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSH------------------------LGEIRFLTHLV 182
                   R+  +         MS+                         G  +     +
Sbjct: 131 TTNDHLNKRLNQNKTKPECATTMSYIQTRYLLHQLATNGINFVALEASSHGLDQNRLMDI 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAK-AEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   A  T+ +  HL     + +   AK     E +   G   +N + +   ++++K   
Sbjct: 191 KFQAAAFTSFSRDHLDYHKTMNKYLDAKLKLFKENIVSNGIAIVNNNINELSIIQSKITD 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + S    +  D Q+   +       +  + +    +     IG     N+L+ L 
Sbjct: 251 EFGLKLLSV--EQQGDIQIINVQSSLNGQKVHFRYKNSDYKFEVLVIGRVHITNILIALL 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D    I  LS   P +GR            +  +D +   N  +      +  
Sbjct: 309 LAVNAGFDSAKLIPLLSNLKPIKGR---MEKIQFGNCYAFVDYALTPNALATM----LTE 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL-K 415
             + + +GR I + G        + +  + +  V S  +   V ++          A+ K
Sbjct: 362 LRTLNSKGRLITIFGGSEN--RDAIARRMQMGIVASKLS-DLVIVTDQDSGNEDPAAIRK 418

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + L  +              +  S +VD D++++  K 
Sbjct: 419 EILQVAPSAIEIPNRGEAIKYAISIMVDNDILLIAGKG 456


>gi|302671350|ref|YP_003831310.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
 gi|302395823|gb|ADL34728.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Butyrivibrio proteoclasticus B316]
          Length = 495

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 86/484 (17%), Positives = 147/484 (30%), Gaps = 50/484 (10%)

Query: 1   MNPLWTFHDL-LQAIQGHS--IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           M       +L      G+S  I    +  +  +  D+R I+    F  IKG ++DGH   
Sbjct: 1   MILSKLLEELKCTVTAGNSAEILDADKVEIKDVVNDNRKISEGSLFICIKGANFDGHSCA 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
           + A  K A  +VV  D V   G   I V  V++   A+  ++ A       K   I ITG
Sbjct: 61  MEAANKKAAAIVVEHD-VELPGDCKIAVIRVENTRYAMAFISAAYFDHPARKLKTIGITG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------- 166
           + GKTTT  ++   L +       IG+    IG     A       F + E         
Sbjct: 120 TKGKTTTTYLIRNMLENAGHKVGLIGTIEVIIGEEHIHAENTTPESFALQEYMARMVEAG 179

Query: 167 -----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                + +S  G +   T      I + T I P H+              +         
Sbjct: 180 CDSVVMEVSSQGLMLHRTQGFIFDIGIFTNIEPDHIGP-----NEHKDFEDYMHCKGLLF 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK---WKQCSEQSWMEVQLQG 278
                   +  ++             Y++G  +  D +       ++  E          
Sbjct: 235 KQCRIGICNGDDIHTDDILEGHTCKAYTYGFGEGLDLRAINLAYIRKPGELGVFFDTEGL 294

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +M       G     N L  + +   L    +    AL           R         
Sbjct: 295 INMHAEIRTPGKFSVYNALCAIAVAQELGCTPEEIAPALKDAK----VKGRIEMVKVSDE 350

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FTL+ +  +       A  S+L+ +  +   R I+V G     G  S+    ++ EV   
Sbjct: 351 FTLMIDYAHNA----MALKSLLTTLRDYHPNRLISVFG---CGGNRSKLRRFEMGEVSGK 403

Query: 399 YNISHVWLSG----FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           Y+   +  S          + + +                      +       GD++V+
Sbjct: 404 YSDFTIITSDNPRYEEPEDIMNDIETGMKKTDGKYIKITDRKEAIRYAIDHGEQGDIIVL 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|262370678|ref|ZP_06064003.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
 gi|262314478|gb|EEY95520.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter johnsonii
           SH046]
          Length = 498

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 77/471 (16%), Positives = 151/471 (32%), Gaps = 56/471 (11%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVN 71
            +           G  +DSR +   + F A+    +        F   A+ KGA  VV  
Sbjct: 11  ANLSAEWMAQPFQGFVLDSRKVQAGQIFIALTSLSQPEKT--EQFAQIALDKGALAVVSE 68

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLT 127
           T++  +          V +V   +        L       A I+A+TG+ GKTT   ++ 
Sbjct: 69  TELALANS------IVVPNVRHLMGGWQKQFLLATSQVQPARILAVTGTNGKTTISRLVA 122

Query: 128 IALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFGIFE---LGMSHL 172
             L  ++     +     +  +P              L            E   +  S  
Sbjct: 123 ELLM-LQGKSCAVMGTTGNGILPNLEASSHTTLDALHLQNALHSYAKQGAEFASIEASSH 181

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +         IA  + ++  HL     +E  A AK+ +F+       +    D+   
Sbjct: 182 GLEQGRLAGSEIEIAAYSNLSRDHLDYHGTLEVYAEAKSRLFQFPSLKVAVINLDDEHAG 241

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++A  +      I ++  ++ AD+ ++  +     +   +       +V +  +G+  
Sbjct: 242 VMIQAAQNNPAQPKILTYSTTQPADYLVKNIQYSLTGANFSLCTAQAEYQVQNPLLGHFN 301

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N++ +L +V     D+   +   +      GR       +       + +  +   A 
Sbjct: 302 IENLVASLIMVEQAGFDLADVVATTAQLKGAPGRM----QVIRDDARLFVVDYAHTPDA- 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
               + VLS +  H E +  AV G     G         L    +L     V L+  +  
Sbjct: 357 ---LVQVLSTLKRHVEQQLWAVFG----CGGDRDRGKRPLMTQAALNGADVVLLTSDNPR 409

Query: 413 ---------ALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +K  +  S  V +          F       GD+VV+  K 
Sbjct: 410 TENPEQIFADMKAGIDFSNRVVHEIHDRREAIKFAVQQAQAGDIVVIAGKG 460


>gi|253699152|ref|YP_003020341.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Geobacter sp. M21]
 gi|251774002|gb|ACT16583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. M21]
          Length = 505

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 129/428 (30%), Gaps = 37/428 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL  ++   +       +  +  DSR +AP   FFA++G   DG +F+  AV+ G
Sbjct: 1   MKLAQLLNCLEAPEVAGDAGIEIESLCYDSRKVAPGALFFALRGVKSDGTEFVEAAVKGG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V +           + V  V D   A++ +A A          ++ ITG+ GKTTT
Sbjct: 61  AVAIVADRPCACP----GVTVVVVPDPRLAMSLMAAAFYGTPTRGIPVVGITGTNGKTTT 116

Query: 123 KE-----MLTIALSSIKKTYACIGSYNNHIGVPLTLAR-----------MPVDVDFGIFE 166
                  M    + S              I  P T              + +     + E
Sbjct: 117 TYLVEGIMEQAGVPSAVLGTISYRFAATEIPAPNTTPESVDLQRILRELVDLGARGAVME 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIF 224
           +  S     +         +A+ T +   HL     +E    +K  +F            
Sbjct: 177 V--SSHSLEQRRVDGCLFDVALFTNLTRDHLDYHLDMESYFKSKLRLFTDLLAPTAEKPL 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +    +        + ++  +  AD  + + +   +     +      + +V
Sbjct: 235 RRAVVNLDDPFGPRIAEKASAPVLTYSMTGKADISVAEAEFTVDGIRCRLDTPVGEISLV 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +G    L    +     +       GR +R               
Sbjct: 295 SELLGRFNLYNILSAVGAGLALGYSKEAIRAGIEGHKRVPGRLERVESEEGITVLVDYAH 354

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +         A  +VLS +S     R I + G     G         +   ++       
Sbjct: 355 T-------GDALENVLSTVSELKTDRIITIFG----CGGDRDKGKRPVMGEIAARYSDLA 403

Query: 405 WLSGFHVL 412
            ++  +  
Sbjct: 404 VITSDNPR 411


>gi|313895810|ref|ZP_07829364.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975235|gb|EFR40696.1| Mur ligase family, glutamate ligase domain protein [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 141

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 + G +T I+++YNA+PASM+AA+   +++ P   GRRIAVLGDM E+G  S   
Sbjct: 1   MRYEVHHIGAWTFINDAYNASPASMRAALETTARLYP---GRRIAVLGDMLELGAASAEG 57

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  +    +    + V   G     + +A         ++ T +     ++  L DGD V
Sbjct: 58  HRSVGRTAAAEGFAVVITYGDEARRIYEAAAAAGCLCRHAATHEEAANLLRGMLADGDTV 117

Query: 448 VVKSSNSCGFYRLINL 463
           + K S       ++ L
Sbjct: 118 LFKGSRGMRMEHIMEL 133


>gi|241664312|ref|YP_002982672.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia pickettii 12D]
 gi|240866339|gb|ACS64000.1| UDP-N-acetylmuramyl-tripeptide synthetase [Ralstonia pickettii 12D]
          Length = 514

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/461 (17%), Positives = 135/461 (29%), Gaps = 49/461 (10%)

Query: 30  ISIDSRSIAPQEAFFAIK-GP---HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           ++ D+R +   + F A   G      DG   I  A++ GA  V+             + +
Sbjct: 33  LTSDTRKLKTGDVFVAYVLGNVRQRGDGRPHIPQAIEAGASAVLAEAHGYTMPADAPVRI 92

Query: 86  FGVDDVLGALNKLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
             VD +      LA             +I +TG+ GKT+  + +  AL+   +  A +G+
Sbjct: 93  LPVDGLAELAGPLAAQWYGVPGPEALRVIGVTGTNGKTSCSQWIAQALTKHGERCAVVGT 152

Query: 143 YNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRFLTHLVRPHI 186
                G    LA         I                  + +S  G  +         I
Sbjct: 153 LGT--GFVDGLAVTGFTTPDAIQLQRSLADLHRAGARAIAMEVSSHGLEQGRVDGTCFDI 210

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + E   AKA +F        +    D +   LL+     +    
Sbjct: 211 AVFTNLTQDHLDYHGTMAEYELAKARLFGWPGLRAAVINRDDAAGVRLLQNARADIETIE 270

Query: 247 IYSFGK-----SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               G+           +    +     +  +V        V    +G     N+L  LG
Sbjct: 271 YGIDGEAAAQHGAKQWLRASNVRAHRTGTTFDVDGSFGHATVHAPTLGLFNVSNLLAVLG 330

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            +         AI  L    P  GR +R+               Y   P +++  +  L+
Sbjct: 331 ALLAAGVPWPDAIAHLEKLQPVSGRMERFGGEDGPLVVVD----YAHTPDALEQTLRALA 386

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            I+    G   AV G     G             ++     HV L+  +           
Sbjct: 387 PITEARGGNLWAVFG----CGGDRDPGKRPQMGAIAERLAPHVVLTSDNPRSEDPQHILD 442

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + D +         E      L         DV+VV  K 
Sbjct: 443 EIADGMENPRAATQIEDRAAAILHAVRHADALDVIVVAGKG 483


>gi|306824884|ref|ZP_07458228.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304433095|gb|EFM36067.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 481

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 156/505 (30%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDDLFREIIDQGHYHYNYNEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT+       LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIDNSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLENIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         ++S +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ + +    S  V      +       +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E++P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471


>gi|299783727|gb|ADJ41725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 511

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%)

Query: 13  AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
            + G      P+   N     +S DSR++     FF  KG  +D   ++  A  +GA + 
Sbjct: 22  IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79

Query: 69  VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ GKTT+ 
Sbjct: 80  MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGFPDRNLTVIGYTGTKGKTTSV 139

Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167
                 ++              +          H+  P       + +  VD       +
Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S     +     +   I V   I+P H+S       E+  + K+EI +          
Sbjct: 200 EVSSQAYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284
                +   L  K+H LG + I        AD+Q R         +     L     +  
Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L  L + + +    +     L+                ++       +
Sbjct: 317 VMMPGDFNVANALAALTVAAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+ A+ + +       +GR I V+G     G  ++S   D+   LS Y    +
Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426

Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             S          +   +  +I      V  +           +    GD  +  ++  
Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484


>gi|260662528|ref|ZP_05863423.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
 gi|260553219|gb|EEX26162.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6 [Lactobacillus fermentum
           28-3-CHN]
          Length = 511

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 81/479 (16%), Positives = 149/479 (31%), Gaps = 53/479 (11%)

Query: 13  AIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
            + G      P+   N     +S DSR++     FF  KG  +D   ++  A  +GA + 
Sbjct: 22  IVAGKWHDRAPEELANRTVLDLSYDSRTVKEGTLFFC-KGLKFDP-KYLTMAANQGASVA 79

Query: 69  VVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
           +   D  A +       +P   V D+  A+  ++ A         T+I  TG+ GKTT+ 
Sbjct: 80  MAPADYSAQLKTSEHPDLPQVIVTDIQKAMATVSRAFFGYPDRNLTVIGYTGTKGKTTSV 139

Query: 124 EMLTIALSSI-----------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFEL 167
                 ++              +          H+  P       + +  VD       +
Sbjct: 140 YFTRHVMAKALGKVVAQLSSIDECLDGETFIPAHLTTPESLDLFRMMKEAVDNQMKYLVM 199

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
            +S     +     +   I V   I+P H+S       E+  + K+EI +          
Sbjct: 200 EVSSQSYKKSRVFGLPLDIGVFLNISPDHISPVEHPSFEDYLACKSEIIDNCRILVVNRE 259

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVV 284
                +   L  K+H LG + I        AD+Q R         +     L     +  
Sbjct: 260 CSQYDY---LAEKAHDLGKQVISFGSDQSAADYQYRLGEHGYFTVTTANPALPKLDGDFR 316

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L  L + + +    +     L+                ++       +
Sbjct: 317 VMMPGDFNVANALAALTVTAQVAPVSEDFRAGLAETTVPGR----MEFIKDKQGVVACVD 372

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S+ A+ + +       +GR I V+G     G  ++S   D+   LS Y    +
Sbjct: 373 -YAHNYLSLTASFNFMKH--EFKDGRLIVVIGAA---GGKAESRRKDIGRALSQYADVAI 426

Query: 405 WLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             S          +   +  +I      V  +           +    GD  +  ++  
Sbjct: 427 LTSEDNFFEDPHQIAADIKENIDNPDLEVIVNVDRKAAIEQAYAMAKPGDA-LFMAAKG 484


>gi|315613493|ref|ZP_07888401.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
 gi|315314489|gb|EFU62533.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sanguinis ATCC 49296]
          Length = 481

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 154/505 (30%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH        F + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSDVFFDNISYDSRKVKEGTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         ++S +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ + +    S  V      +       +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIADREEAIKAAMAITNQEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E++P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471


>gi|313888441|ref|ZP_07822108.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845470|gb|EFR32864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 511

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 144/458 (31%), Gaps = 58/458 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +  +  I+  +  +     F AIKG   DGH FI  A + GA + VV           
Sbjct: 20  DKEIEIKNIAFHTDDVVEGGIFVAIKGYVTDGHKFIKKARELGAEIAVVE-----DYSEE 74

Query: 82  SIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +I    V++   AL  +A            +I IT + GKTTT  M+   L   K+    
Sbjct: 75  NIKQIRVENSRIALADMARNFYEDPSKDMNVIGITATNGKTTTAFMVNSILEEDKRNTGI 134

Query: 140 IG---SYNNHIGVP-----------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           IG   +    + +P            +  R   D       + +S   +  +    +   
Sbjct: 135 IGTVLTRYADVMIPSVLTTPESLTLQSYFRDMKDKGVTDVTMEVSSSAQELYRNKNIDFD 194

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL--- 242
           I     +   H+      E     K+ +    ++     LN DD     L+ K+ A    
Sbjct: 195 IVTFNNLGREHIDQHGSFENYFRFKSRLIRHAKEDALAILNADDEKIYSLRDKTKAQVLS 254

Query: 243 -----GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                            ++      +K   +    +  L+     +    +GY    N L
Sbjct: 255 FSLESNDAEFGIQDLDLSSGKGKFTFKINRDIKIKDFILEKSEFNIELGSVGYSSVMNSL 314

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I   L  D +T  +AL  F   E      R  L       I + + AN  ++ A +
Sbjct: 315 VAIIIGLCLKIDTETIKRALKNFKGVER-----RFELIFDEEFKILDDHFANEKNIDATM 369

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-------------YNISHV 404
             L ++         A+       G+     + ++ E L                +   V
Sbjct: 370 ETLKEMDYKNLNILYAI------RGKRGVEVNREITERLVKWIKVLNPKSLTATLSRDTV 423

Query: 405 ----WLSGFHVLALKDALPRSI-HVHYSETMDGLFLFI 437
                ++   +   KD L ++       +T++      
Sbjct: 424 KEKDRVTDEELKVFKDILEKNKIDCKVYDTLEESINDA 461


>gi|226307044|ref|YP_002767004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
 gi|226186161|dbj|BAH34265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Rhodococcus erythropolis PR4]
          Length = 544

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 152/493 (30%), Gaps = 62/493 (12%)

Query: 7   FHDL----LQAIQGHSIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGHDFILHA 60
             +L    L+ + G       +  V G+  D R+  I   + F A+ G    G  F + A
Sbjct: 29  LSELSGARLEWV-GQPGSQSSEVVVKGV--DLRAQGIVADDLFAALPGARTHGAQFAVDA 85

Query: 61  VQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112
           + +GA  ++ +       +        S+PV    +    L +++     R   K  ++ 
Sbjct: 86  LGRGATAILTDEAGLELIEAAGKAPDRSVPVLVHPNPRDVLGEISAEIYGRPSEKMQVVG 145

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARM 156
           ITG+ GKTTT  +L  A++   +    +G+    I                   L     
Sbjct: 146 ITGTSGKTTTSYLLEAAIAGAGRKPGLVGTIETRIDGRRVPSALTTPEAPQLHALFAVMA 205

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIF 214
              +D  + E+  SH   +  +  + R  I   T ++  HL      EE   A A+    
Sbjct: 206 EQGIDTVVMEV-SSHALALGRVDGI-RFDIGAFTNLSQDHLDFHRDFEEYFQAKARLFDP 263

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E   +     +  DD +   +   +       + +   S           + +E      
Sbjct: 264 ESTVRAEHAVVCVDDVWGRRMAELAATDESDAVTTVSTSTAEAEWKVGAVEVAEDGSQTF 323

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +L G   +     +      N+      +++  A       A+      +  G+  R   
Sbjct: 324 ELVGPDGQSWPVSLRLPGRYNVANAALALTVSFAAGLDPDAAVRALGTVDVPGRVQRIDR 383

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            Q F  ++D ++            V++ +     GR   V+G     G    +    L  
Sbjct: 384 GQSFLAVVDYAHKPAALEA-----VIATLRNQVPGRVAVVVGA----GGDRDAGKRTLMG 434

Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSS 440
                    + ++           ++ ++ +            +                
Sbjct: 435 EAGARGADLLIVTDDNPRTEDPAKIRASVMQGAIDVPESERGEIREVGDRALAIEQAVRW 494

Query: 441 LVDGDVVVV--KS 451
              GDVV+V  K 
Sbjct: 495 AQPGDVVLVAGKG 507


>gi|159185046|ref|NP_355064.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
 gi|24212040|sp|Q8UDM3|MURE_AGRT5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|159140320|gb|AAK87849.2| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Agrobacterium tumefaciens str. C58]
          Length = 489

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 71/456 (15%), Positives = 131/456 (28%), Gaps = 38/456 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +  +    + GI+ DSR  AP   F A+ G   DG  ++       A        +   
Sbjct: 18  LLSEIGAIEIGGITADSRKAAPGSLFVAVAGTKADGAAYVKD-----AVAKGAVAVVSGH 72

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                +PV  V D    L+  A     +   T++A+TG+ GKT+    +    +      
Sbjct: 73  AVEADVPVLVVTDPRLYLSLAASRFYGKQPDTMVAVTGTAGKTSVASFVRQIWAFAGHAA 132

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
           A IG+             +       +                +  S  G  +     V 
Sbjct: 133 AQIGTTGVIAPGREDYGALTTPDPVTLHALLAELASEGVTHAAMEASSHGLDQRRLDGVH 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A  T +   H+     IE+  +AK  +F+ L + G   + + D  +      +    
Sbjct: 193 LSAAGFTNLGRDHMDYHPTIEDYMAAKMRLFDTLMEKGAPAVIFADDPWSDKAIGAAREA 252

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G++       R      +Q              +           +   L   
Sbjct: 253 GLEVRTVGRNGQYLTLKRVEHFRHKQMIEVHHDGVIFEVDI----PLAGDFQVANALVAA 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  +    A  AL       G   R           L    Y   P ++    +VL+ +
Sbjct: 309 GLAMSTGVPAATALKALEKLVGAAGRLELVGQTKNGALAYVDYAHKPDAL---ENVLTSV 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK-DA 417
            P   GR I V G     G         +   ++      V ++           ++ + 
Sbjct: 366 RPFTSGRIITVFG----CGGDRDKGKRPIMGEVATRLSDIVIVTDDNPRSEDAATIRSEV 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +                 S L  GD ++V  K 
Sbjct: 422 MAAAAGALEIGDRAEAIRHAVSMLSHGDTLIVAGKG 457


>gi|313898702|ref|ZP_07832237.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
 gi|312956586|gb|EFR38219.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Clostridium sp. HGF2]
          Length = 523

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 151/360 (41%), Gaps = 20/360 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
              A   R  +  +I+ ITGS GKT+ K +L   LS +  T    GSYNN +G+ LT+  
Sbjct: 168 ADAAKLLRSNNALSIVGITGSYGKTSVKTILNELLSDVYYTLMTPGSYNNQMGITLTIRN 227

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    +  + E+G  H+ EI  L   V+P   V+T++   HL+ F  +E I   K ++ 
Sbjct: 228 KLERLHEVFLCEMGADHVKEIHDLMQFVKPQYGVVTSVGAQHLATFGSMENILHEKMQMI 287

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E L   G  F+N D+++               I  FG S++AD++    +   E +   V
Sbjct: 288 ECLPADGIGFVNRDNAYIRT----YSIQNTCRIVWFGMSEDADYRCCDIRYSEEGTSFTV 343

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +G+S       +G H   N+   + +   L    +    A+      E     +R  +
Sbjct: 344 IQEGQSHRFHTKLLGKHNVVNITCAIAVAHTLGVSWEIMALAVEKLPYVE-----HRLQV 398

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            + F TL+D++YN+NP   + A+ VL Q+          +     E+GE  +     L E
Sbjct: 399 RKSFCTLLDDAYNSNPEGARCALEVLKQMKHQR----FIITPGFLELGEQQEEEQYKLGE 454

Query: 395 VLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++   +    L G     ++   L  S      VH  ++       +Q      D V++
Sbjct: 455 EIADS-VDTAVLVGAVQTKSIAAGLTDSGFPKERVHVCDSFQEALAIVQKQAQLQDCVLL 513


>gi|205372805|ref|ZP_03225615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus coahuilensis m4-4]
          Length = 443

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 144/429 (33%), Gaps = 35/429 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG-PHY--DGHDFILHAV 61
                LL+ +  +++   P   ++ I +DSR +  Q  +  + G   +  D HD+I  A+
Sbjct: 1   MKLSHLLKDLTQYTLTGNPTIEISQIEMDSRRVKNQCMYICVPGIEGFLADRHDYIDQAI 60

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG---- 115
           + GA  ++V  ++        I V  V+DV  A +K+A      +  +  II +TG    
Sbjct: 61  ENGAHAILVEKEVDV---PSHITVVRVEDVRLAFSKIATVFHNEAYKQLKIIGLTGTNGK 117

Query: 116 -----------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFG 163
                      +     T  M  +        Y    +      +    A+M   D+++ 
Sbjct: 118 TTTTFLVEKLLNDAGLKTGLMGNLGTKINGIMYPTELNTQEPHTLHRNFAKMVEEDMEYC 177

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  S  G        V  +  ++T +   HL     ++    +K+++F  LE+    
Sbjct: 178 VMEV--SSQGIDMGRMKGVPFYRGILTNLTHDHLDYHGTVDHYMHSKSQLFTHLEEFEGE 235

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  +   A           S+G  +++  Q  +          +V  +    E 
Sbjct: 236 KPLAILNKDDDSYAYFKNASRGETISYGIDQDSIVQASELHFNKNGIHFKVTNKRSLEEQ 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H        N+   L  +++      T  ++            R          T+I 
Sbjct: 296 EIHL-PLVGKFNVYNALAAITVAYTVGVTLEESKRSLENLSQIPGRMESFTTANGVTVIV 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +   A      +VL  +    +G+ I V+G     G         +   ++     +
Sbjct: 355 DYAHTPDA----LENVLQSLKSSLDGKLITVVG----CGGNRDENKRPIMGKIAAECSDY 406

Query: 404 VWLSGFHVL 412
           V+ +  +  
Sbjct: 407 VYFTSDNPR 415


>gi|78046382|ref|YP_362557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78034812|emb|CAJ22457.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 491

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 136/455 (29%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+           +  
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139
               V  +   L  +A     R      ++ +TG+ GKT+T ++L  AL+ +        
Sbjct: 74  DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187
                         +   + +P       +  +      + +S     +     V   +A
Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     + +  +AKA++F        +    D     L  A   AL    +
Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVVNLDDGFGRTLFAALDPALRAIGV 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S     +AD  +       + + +   L  +      H           +     ++  
Sbjct: 254 SS---RAHADASVSAQALQLDHNGINFALNVQGQVHPVHSPLLGRFNVDNLLAVAGALWA 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +   A  A  +   +   G+  R     G   ++ +  +   A        LS +  H 
Sbjct: 311 MEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSHA 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G    +        ++        ++  +            +    
Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRGF 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R                        D+V++  K 
Sbjct: 423 ARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|325915639|ref|ZP_08177947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325538199|gb|EGD09887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 491

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 141/455 (30%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+      A +  +  
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAVAVLFEPPAPAEL-PVPA 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK------- 134
               V  +   L  +A            ++ +TG+ GKT+T ++L  AL+ +        
Sbjct: 74  DAIAVPGLRARLGSMADQFHGHPSRALRMVGVTGTNGKTSTVQLLAQALTLLGTSTGTLG 133

Query: 135 ------KTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187
                    A    +   + +        +  +      + +S     +     V   +A
Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLSTHALLAQLRDEGAQAAAMEVSSHALDQGRVDAVHFDVA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     + +  +AKA++F        +    D     L  +   AL    +
Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLQAAVVNLDDAFGRTLFASLDPALRAIGV 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S G+   A  +    +         +++      V    +G     N+L   G +  L 
Sbjct: 254 SSRGQ-GGATVRADALQLDHNGISFALRIDSTVHAVHSPLLGRFNVDNLLAVAGALHALD 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                  + L    P  GR    R     G   ++ +  +   A        L+ +  H 
Sbjct: 313 HAPAQIAQVLGQLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALASLRSHA 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G    +        ++  N     ++  +            +    
Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAELNADVAIVTDDNPRGEDGDVIVADIVRGF 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R                  +     D+V++  K 
Sbjct: 423 ARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 457


>gi|109899825|ref|YP_663080.1| UDP-N-acetylmuramyl-tripeptide synthetases [Pseudoalteromonas
           atlantica T6c]
 gi|109702106|gb|ABG42026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudoalteromonas atlantica T6c]
          Length = 530

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 72/470 (15%), Positives = 136/470 (28%), Gaps = 49/470 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  + +DSR +A   AF A+KG   DG DFI  A+  GA +++   +  A  G  
Sbjct: 41  AGDITIESLVLDSRDVAIHSAFIALKGHVRDGRDFIPQAISLGAKVIIAECETQAEHGHT 100

Query: 82  SIP----VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL----S 131
           S+     +    D+   L+ LA A          +I +TG+ GKT+T ++ +        
Sbjct: 101 SMREQSLIISFYDLSAQLSALAAAFYGYPAKSIQVIGVTGTNGKTSTVQLTSQLAALLNK 160

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEI 175
                        +  G   +           I                  L +S    +
Sbjct: 161 RAASIGTLGSGVIDQSGACASHNETANTTPDAISMHKLMAQFAQDQVKQVALEVSSHALV 220

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +     ++  +AV+T +   HL     ++  A AK E+ +  E    +    +      L
Sbjct: 221 QQRVAALKTDVAVLTNLTRDHLDYHGTMQAYAQAKRELLKQPELRFAVLNGNEIESKHWL 280

Query: 236 KAKSHALGIKTIYSFGKSKN---ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                A+         +S     A+ Q               +L     E          
Sbjct: 281 AQLPSAVTPVIYGIADESLMLTDAEHQCLAKDVVYSNQGCRFKLVSSWGECDIQLSLLGR 340

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
                    I S L         A          G+  R   +     ++D ++  +   
Sbjct: 341 FNIFNALAAIASQLCLGESLNDIAKHAHLLVPVTGRMERFGGDNSPTVVVDYAHTPDA-- 398

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                  L  +  H +GR   + G     G    +    L   ++      + ++  +  
Sbjct: 399 ---LKQALVALRQHSQGRLSVIFG----CGGDRDTGKRSLMGEVAETYADDMTITNDNSR 451

Query: 413 -----ALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A+   +         V               +    D+++V  K 
Sbjct: 452 SEDPTAIATDILSGCVHPEKVQVVLDRKAAIEQAVLNATANDIILVAGKG 501


>gi|238916651|ref|YP_002930168.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
 gi|238872011|gb|ACR71721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Eubacterium eligens ATCC 27750]
          Length = 497

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 139/484 (28%), Gaps = 54/484 (11%)

Query: 5   WTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
               ++L+              +       V GI+ DSR +    AF  IKG   DGH +
Sbjct: 1   MKLSEILKICSENETADFRYSVVCGDTDVDVTGITSDSRKMQDGYAFVCIKGAVSDGHKY 60

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA---- 112
           I   ++  A ++VV  D           V   D+   AL  ++ A        +      
Sbjct: 61  IDQ-IKDKASVIVV-LDGEYEAKDCKAAVVSTDNTRLALALMSAAVYGNPDRKLFTIGIT 118

Query: 113 --------------ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                         +  + G  T        +   +   A   +  +          +  
Sbjct: 119 GTKGKTTTTYMVKNVLEACGIKTGLIGTIETIIGDEAIPAHNTTPESIEIHQSFAKMVDA 178

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                + E+  S  G     T  +   I V T + P H+           +  +      
Sbjct: 179 GCKAVVMEV--SSQGLKLDRTAGIMFDIGVFTNLEPDHIGP-----NEHESFEDYLNCKA 231

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K          +  +          I  + S+G   NAD +    +   E   + +    
Sbjct: 232 KLFKQCKVGIVNADDKHTQDILRGAICKVESYGIGDNADIKAENIELLHEPGKIGLTYDC 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
             +  +   +      ++  +L  ++I                  + +G+     ++  F
Sbjct: 292 TGLVNMKVELNLPGKFSVYNSLCAIAITRHFDVDEEALKETLKHVKVKGRIELVKVSDDF 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID ++NA        +++ S ++   E     ++      G  S+    ++ EV   
Sbjct: 352 TLMIDYAHNA--------MALESILTTLKEYHPHRLVCLFGCGGNRSKERRYEMGEVSGK 403

Query: 399 YNISHVWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
                +  S         A+ + +   I      + +         +       GD++V+
Sbjct: 404 LADLTIITSDNPRFEEPEAIIEDIKTGIAKTTGKHVDITDRKEAIKYAIEHGEPGDIIVL 463

Query: 450 --KS 451
             K 
Sbjct: 464 AGKG 467


>gi|258593043|emb|CBE69354.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase) [NC10
           bacterium 'Dutch sediment']
          Length = 504

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 83/480 (17%), Positives = 140/480 (29%), Gaps = 48/480 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL+   +   +       V+ I  DSR + P + F  I G   DGHDFI  A   GA 
Sbjct: 3   LFDLINGTEHQVLRGSVDLEVHEIRYDSRQVKPGDLFVCIGGFRRDGHDFIQAAWAAGAV 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
             +V    +         V  V +   +L  +A           +++ +TG+ GKTTT  
Sbjct: 63  AALVERTDLTEAALQGGTVVKVANTRQSLAAVACRFYGHPSRSLSMVGVTGTNGKTTTTY 122

Query: 125 MLTIALSSIKKTYACIGSYNNHI---------GVPLTL-------ARMPVDVDFGIFELG 168
           ++   L         IG+                P +            +  D  + E+ 
Sbjct: 123 LVESVLRCAGHQVGLIGTIGYRCNELELEAARTTPESCDLQALLERMARLRADSVVMEV- 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLN 226
            SH   +  +       +AV T +   HL     +E    A        G+  T T    
Sbjct: 182 SSHALALHRVDGC-EFDVAVFTNLTQDHLDFHGTMEAYRSAKLSMFEGLGVGSTKTTEKA 240

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +              YS+     AD  +   K   +     +Q    +  +   
Sbjct: 241 AVVNLDDPAADLFLGATRVRRYSYSVEGPADLSVADVKMGPDGIRCRLQTPWGTTAIRSP 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G +   N+L        L AD+      ++  H   GR +R               + 
Sbjct: 301 LLGRYNLSNILAAAATGLHLGADLSAVADGIAALHHVPGRCERVETGQAFSVMVDYAHTP 360

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A          VL        GR I + G     G         L    +L       +
Sbjct: 361 DA-------LRRVLRMARQCCPGRLIVLFG----CGGERDRGKRPLMGEAALELADFTVI 409

Query: 407 S-----GFHVLALKDALPRSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451
           +     G     + + +       + +                  S    GD+VV+  K 
Sbjct: 410 TSDNPRGEDPHQIIEEIETGAKKVWGQGKGYVTILDRGMAIREALSLAGRGDMVVIAGKG 469


>gi|299768539|ref|YP_003730565.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
 gi|298698627|gb|ADI89192.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. DR1]
          Length = 499

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 76/464 (16%), Positives = 144/464 (31%), Gaps = 57/464 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           Q   +G S+DSR +   + F A+    +        F   A+  GA  ++  T++  +  
Sbjct: 19  QQPFHGFSLDSRKVQSGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE 76

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKK 135
                 +   DV   + +                I+A+TG+ GKTT   ++   L S ++
Sbjct: 77  ------WVCPDVRQRMGEWQERYLQHIDPVTPARIVAVTGTNGKTTISRLV-AELISSQQ 129

Query: 136 TYACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTH 180
               +     +  +P                    D+         L  S  G  +   +
Sbjct: 130 QRCAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLN 189

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                IAV + ++  HL     +E  A AKA +F        +    D+    ++ A   
Sbjct: 190 GCAIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFNSLKVAVINLDDEHAALMINAAKQ 249

Query: 241 ALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 I ++  ++N  D+ +         +   +     S  V    +G+   +N++  
Sbjct: 250 NPAQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSSQGSFAVQSPLLGHFNVENLIAA 309

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L             + AL  F PK          +  G    + +  +   A     I V
Sbjct: 310 LIAAEQAGF----DLDALVAFVPKLIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQV 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------- 412
           L  +  H   +  AV G     G         L    +L   + + L+  +         
Sbjct: 362 LKTLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQI 417

Query: 413 --ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +K  +      +           F+      GD+VV+  K 
Sbjct: 418 FADMKQGINFSGHRMQEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|254427286|ref|ZP_05040993.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
 gi|196193455|gb|EDX88414.1| UDP-N-acetylmuramyl-tripeptide synthetases subfamily [Alcanivorax
           sp. DG881]
          Length = 490

 Score =  106 bits (264), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 155/476 (32%), Gaps = 45/476 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL  +            ++G+ +DSR++AP + F A+ G   DG  FI  AV  
Sbjct: 1   MMTLQQLLPDV--TLPASAAGVVLSGLQLDSRNVAPGDLFLAVPGVASDGRQFISQAVAA 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+ + +        ++P   + ++   +  LA            ++ +TG+ GKT+
Sbjct: 59  GAVAVLADAETFEIQQDQAVPCVALPELGRRVGTLAARWYGEPGAAMNVVGVTGTNGKTS 118

Query: 122 TKEMLTIALSSIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               L  AL+++                       +  + I +   LAR+       +  
Sbjct: 119 ITWFLRDALNALGHRCALVGTLGLGLKGDEQTTGHTTPDPITLQAGLARVRDAGADCVAM 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  +   L     P +AV + ++  HL     +E   +AK+ +F        +   
Sbjct: 179 EVSSHALDQHRLGSTPVP-VAVFSNLSRDHLDYHGDMEAYLAAKSVLFTRDGVKLAVINC 237

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D + + L+             +FG    A  +       ++    E+ + G  + V   
Sbjct: 238 DDPAAYSLI---GCLADGVRCVTFGDQPGATVRCAAVTFTADGMRAELTVGGDPLTVTLP 294

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N++   GI+        +   AL+      GR +  +             + 
Sbjct: 295 LFGRFNLSNVMAVAGILHGQGISTASLGGALAAVTAVPGRMEPVQQPGCPTVIVDYAHTP 354

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +            L     H  GR   ++G     G    +        ++      V L
Sbjct: 355 DG-------LEKALQACRAHFHGRLFCIVG----CGGDRDTGKRPQMAAVAERGADRVVL 403

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            ++  L  +  V          +    +  DGDV+++  K 
Sbjct: 404 TSDNPRSEDPQQIIDDMRAGLADAASVQAIVERAQAVMDTVQAASDGDVILLAGKG 459


>gi|164686386|ref|ZP_02210416.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
 gi|164601988|gb|EDQ95453.1| hypothetical protein CLOBAR_02824 [Clostridium bartlettii DSM
           16795]
          Length = 502

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/471 (14%), Positives = 147/471 (31%), Gaps = 63/471 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
               +  I+  S        F A+KG   DGH ++  A  +GA + V+  D+  +  ++ 
Sbjct: 23  DDIEIVDIAYSSLKCQEGYMFVALKGETVDGHKYVFDAYSRGARVFVLQDDIEMADDAIK 82

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                V+D   AL+K++            II +TG+ GKTT    ++  L+        +
Sbjct: 83  ---IIVEDSRIALSKISANYFGNPSKSLKIIGVTGTKGKTTITNYISEVLNRAGINTGVV 139

Query: 141 GSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           G+                        + R  +D       + +S  G  R     V   +
Sbjct: 140 GTNGTFYNNISETTVNTTPESYELHRIFRKMLDSGVECVSMEVSSGGLQRHRVEHVDFDV 199

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           A+ T ++P H+        +     KA++        T+  +   +  +    +   +  
Sbjct: 200 AIFTNLSPDHIGPKEHPTFQNYLECKAKL-------FTLAKHGIINIDDEHAQEIIDIAT 252

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             I +FG  K AD +    +              + +  +        G     N L  +
Sbjct: 253 CDIETFGIKKQADIRATNIEYSKNLDSLGVKFVCETKNTAGNYYICSPGMFSIYNALAVI 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L    +   +AL+          R        + T+I + Y  N  S++  +  L
Sbjct: 313 AVCKYLGVKKEITREALTEAK----VCGRVEVLSVLPYATIIID-YAHNGVSLENILKTL 367

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVL 412
                        ++     +G  ++    +L +V S      +  S           + 
Sbjct: 368 EHYDHKR------LICLFGSVGGRTKIRRKELGDVASRECDLSILTSDNPDFEDPLEIID 421

Query: 413 ALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVV-----------VVKS 451
            +  +  ++   +  E               +GD++           ++K 
Sbjct: 422 DIAKSFDKAKSKYIVEPDRKKAVQLAVRMAREGDMIVLAGKGHETYQLIKG 472


>gi|262280347|ref|ZP_06058131.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258125|gb|EEY76859.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 499

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 147/462 (31%), Gaps = 57/462 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +G S+DSR +   + F A+    +        F   A+  GA  ++  T++       
Sbjct: 21  PFHGFSLDSRKVESGQIFIALTSYSQPEKT--RIFAESALANGALAIISETELGLENE-- 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               +   +V   + +       +        I+A+TG+ GKTT   ++   L S ++  
Sbjct: 77  ----WVCPNVRQRMGEWQQRYLQQIDPVAPARIVAVTGTNGKTTISRLI-AELISSQQQQ 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------LGMSHLGEIRFLTHLV 182
             +     +  +P         +D    +               L  S  G  +   +  
Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYTKQGATFASLEASSHGLEQGRLNGC 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV + ++  HL     +E  A AKA +F        +    D+    ++ A     
Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEYAALMINAAKQNP 251

Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               I ++  ++N  D+ +         +   +  Q  S  V    +G+   +N++  L 
Sbjct: 252 AQPKILTYSLTQNTADYYISDLSYSLAGATFNLVSQQGSFAVQSPLLGHFNVENLIAALI 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                       ++AL  F P+          +  G    + +  +   A     I VL 
Sbjct: 312 AAEQAGF----DLEALVAFVPQLIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            +  H   +  AV G     G         L    +L   + + L+  +           
Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPIILTSDNPRTEDPEQIFA 419

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +K  +      +H          F+      GD+VV+  K 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|325067117|ref|ZP_08125790.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinomyces oris K20]
          Length = 528

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 139/455 (30%), Gaps = 40/455 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL--SIPVF 86
           G+S+DS   A  E F  + G    G  F   AV  GA  V+ + D    +       PV 
Sbjct: 49  GVSVDSGDTAAGELFVGLPGFTVHGARFAAQAVASGAVAVLTDADGAQIVHETAPGTPVL 108

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
             DD    +  L+              A+TG+ GKTTT   L   LS+        G+  
Sbjct: 109 VHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTAYFLDAILSAHVGGCMVAGTVE 168

Query: 145 NHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +G              V   +  + V+   G   L  S    +      +   +A  T
Sbjct: 169 LRVGERSVESPRTTVEAPVLQRMMALAVEDKVGAASLEASSHAIVLHRLDGLVVDVAGFT 228

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL     +E    AKA++F   E      +  DD +   L A++     +     
Sbjct: 229 NLQRDHLDFHKTMEGYLEAKAQLFT-PEHARRGVVCVDDQWGAALAAEAPIEIDRVRAYP 287

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +    +        ++ +           ++        +       L +V  + A V
Sbjct: 288 GDTPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRAGV 347

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A    ++       G+  R +   G   L    +   P +M+ A+     + P   GR
Sbjct: 348 PAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMELALKA---VRPITPGR 404

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVH 425
            I V G               +   +       + ++  +  +     +++A+   +   
Sbjct: 405 LIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPQLIRNAILEGVRGV 460

Query: 426 YSE--TMDG-------LFLFIQSSLVDGDVVVVKS 451
             +   ++                    D V+V  
Sbjct: 461 RPDLTDVEEITTWRGDAVRRGVELCGPDDTVIVTG 495


>gi|308177864|ref|YP_003917270.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
 gi|307745327|emb|CBT76299.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           arilaitensis Re117]
          Length = 530

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 82/472 (17%), Positives = 157/472 (33%), Gaps = 46/472 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +   PQ    G+S++ + + P + F  I G    G +F+  AV  GA  ++ +T  +
Sbjct: 39  GALLNAAPQIL--GVSLNPQIVQPGDVFLGISGAKRHGAEFVETAVANGAVAMITDTAGL 96

Query: 76  ASIGS-LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +G  LSIPV  V DV  +   +A       +    +  +TG+ GKTTT  M+   L +
Sbjct: 97  EFLGDGLSIPVAVVADVRKSAAAIAQNVYGTDQRSPKLFGVTGTNGKTTTTYMIRAILDA 156

Query: 133 IKKTYACIGSYNNHI---------GVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFL 178
           + +    IG+                P +     V       +     + +S        
Sbjct: 157 LGEETGLIGTIEMSARGQIIPSVLTTPESTQLHGVLARMAQQDVSSVAMEVSSHSLSYGR 216

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +R  ++  T +   HL     ++E    KA++F   E++    +  DD + + L  +
Sbjct: 217 VDSLRFAVSGYTNLTQDHLDLHGTMDEYFETKAQLFTA-ERSERAVVMVDDQYGQRLAER 275

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +                              S+      G+ +       G     N  +
Sbjct: 276 ALVPTETLSLDEAHPSAYWRVTELAHSGLGHSFTLRHRDGRELRARTLLPGMFNVANGAL 335

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +V     ++DT  +AL+   P           + +    ++D ++N++  +      
Sbjct: 336 AAVMVLASGVELDTLQRALNAGDPLSVAVPGRMQVVGESPVAVVDFAHNSDALA-----K 390

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
            L  I P  +GRRI V G   E               ++  +   V ++     G     
Sbjct: 391 ALDSIRPGEQGRRIVVFGATGE----RDKTKRPDMGAVAARHADIVIVTDDDPHGEDPAP 446

Query: 414 LKDALP-----------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           +++ +              + VH          F  S     D ++V     
Sbjct: 447 IREQVASGAQQVLDTERPGVQVHNIAPRAKAVEFAVSLAHANDAILVAG-RG 497


>gi|323165968|gb|EFZ51748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 492

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/470 (14%), Positives = 140/470 (29%), Gaps = 45/470 (9%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
              +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G   ++      
Sbjct: 6   APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKAK 65

Query: 76  ASIGS------LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
                        +PV  +  +   L+ LA            ++ +TG+ GKTTT ++L 
Sbjct: 66  DEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLA 125

Query: 128 IALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------LGMSHLG 173
                + + +       N  +G  +              E             + +S  G
Sbjct: 126 QWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVEQGATFCAMEVSSHG 185

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            ++     ++   +V T ++  HL     +E   +AK  ++        I    D+    
Sbjct: 186 LVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRR 245

Query: 234 LLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L     A+ +        + +  + +          + +         E+  H +G   
Sbjct: 246 WLAKLPDAVAVSMEDHINPNCHGRWLKAIDVNYHDSGATIRFSSSWGDGEIESHLMGAFN 305

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L+ L  +  L   +   +K  +   P  GR + +              + +A    
Sbjct: 306 VSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHTPDA---- 361

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                  L     H  G+   V G     G         L   ++        ++  +  
Sbjct: 362 ---LEKALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADVAVVTDDNPR 414

Query: 413 ---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +   +  + H    E              + DVV+V  K 
Sbjct: 415 TEEPRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKG 464


>gi|58583453|ref|YP_202469.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625265|ref|YP_452637.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|75434163|sp|Q5GW37|MURE_XANOR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|123521000|sp|Q2NZB4|MURE_XANOM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|58428047|gb|AAW77084.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84369205|dbj|BAE70363.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 495

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V+G+ +DSR++AP +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
              GA  V+           + +    V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  RANGATAVLFE-PPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  AL+ +                      +   + +P       +  +    
Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  ++   L    + S     +AD  +       + + +   L  +     
Sbjct: 235 NLDDGFGRTLFASRDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIQGEVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   D+  A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +        ++  N    
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                  +     D+V++  K 
Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|225028091|ref|ZP_03717283.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
 gi|224954561|gb|EEG35770.1| hypothetical protein EUBHAL_02361 [Eubacterium hallii DSM 3353]
          Length = 486

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 149/471 (31%), Gaps = 43/471 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
             LL+ ++   +       V  +  DSR I     F  IKG  +DGH F   A +     
Sbjct: 4   SQLLEHLEYTCLQGSTDVKVTAVVNDSRKIEEGCLFLCIKGAAFDGHKFAAEAAE---KG 60

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEM 125
             V           S+ V  VD+   A+  ++ A       + T IA+TG+ GKTTT  M
Sbjct: 61  AAVLVVEDEVEVPDSVTVIKVDNTRYAMALISAAWFGYPAEELTTIAVTGTKGKTTTTYM 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSH 171
           +   L         IG+    IG                 +  R   + D  +  +  S 
Sbjct: 121 VKSLLEEAGHKVGVIGTIEVVIGQEHIPVNNTTPESYDIHSYFRKMAEEDCDVVVMEASS 180

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            G     T  +     + T ++P H+             AE      K          + 
Sbjct: 181 QGFKLDRTAGIMFDYGLFTNLSPDHIGP-----NEHKDFAEYLSCKAKLFNQCRYGYANI 235

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +   A+        I +FG ++NAD      +   ++ ++ V    K         G  
Sbjct: 236 DDEHFAEITKNATCPIETFGLNENADLVAYDVELTRDRDFLGVDFGLKGTCEGKISCGVP 295

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+   LG +SI      T  +          +G+         +  +ID ++NA   
Sbjct: 296 GTFNVHNALGAISIAGHMGVTVEQMNKALRHFSVKGRVQIVPTGYDYTLIIDYAHNAVAL 355

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
                   L+ +  +   R I++ G     G  S+    ++ EV        +  S    
Sbjct: 356 ESI-----LNTLRAYDPPRLISLFG---CGGNRSKLRRYEMGEVSGKLADFTIITSDNPR 407

Query: 409 -FHVLALKDAL---PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                A+ D +    +     Y           +       GD+VV+  K 
Sbjct: 408 FEEPQAIIDDILIGMKKTDGEYISIIDRHEAISYAMHHAQPGDIVVLAGKG 458


>gi|322375576|ref|ZP_08050088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
 gi|321279284|gb|EFX56325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C300]
          Length = 481

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 82/505 (16%), Positives = 155/505 (30%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAISQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVQNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMENSR---AVVINSDMDHFSVLKEQVEHQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         ++S +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ + +    S  V      +       +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIAEEISSYISHPVEKIVDREQAIKAAMAITNQEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++N + E +P
Sbjct: 448 DAVIIAG-KGADCYQIVNGVKESYP 471


>gi|283768730|ref|ZP_06341641.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
 gi|283104516|gb|EFC05889.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Bulleidia extructa W1219]
          Length = 523

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 150/354 (42%), Gaps = 20/354 (5%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVD 161
             +     I ITGS GKT+TK ++   +     +     SYN  +G+ +T+   +     
Sbjct: 173 YAQRDLIKIGITGSYGKTSTKNIIQSIVREEYHSLMTPASYNTPMGITMTIRNYLKPIHQ 232

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G  H+GEI  L   V+P I V+T++ P HL  F  +E I   K ++ E L K G
Sbjct: 233 VFVCEMGADHVGEITRLMKYVQPQIGVVTSVGPQHLLTFGSLENIIHEKMQMIERLPKDG 292

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKS 280
              +N D+ +      +        + SFG      D++  K    +  S+  V    + 
Sbjct: 293 LGVINLDNDYIR----QYRVKNSVPLISFGIQSEDVDYRAVKISYTTTGSYFTVVHAKEE 348

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +      +G     N+L  + +   L     +  +A++     E R +  +         
Sbjct: 349 VAFHTKLLGELNIMNILSGIVVARHLGISWKSLQRAVANMEQVEHRLELKKING----HR 404

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+++NANP   K A+ VLS +     G+R  +   M ++G+    ++ +  + +  + 
Sbjct: 405 FIDDAFNANPIGAKMALEVLSMMP----GKRYIITPGMIDLGKKQDEYNREFGKRMKHF- 459

Query: 401 ISHVWLSGF-HVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  V L G     A+++ L      + H+H  +T+     ++     + D +++
Sbjct: 460 VDEVILVGPKQTKAIQEGLAEMNFDADHIHVYQTVQEALAYVYEHADEHDTILL 513


>gi|21241545|ref|NP_641127.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
 gi|24212035|sp|Q8PPB2|MURE_XANAC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21106896|gb|AAM35663.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 495

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 142/478 (29%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V+G+ +DSR++ P +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALTHDVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
              GA  V+           +      V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  RANGAAAVLFE-PPAPDGLPVPADAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  AL+ +                      +   + +P       +  D    
Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDDGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  A   AL    + S     +AD  +       + + +   L  +     
Sbjct: 235 NLDDAFGHTLFAALDPALRAIGVSS---RAHADASVSAQALQLDHNGINFALNIRGQVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   +   A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWAMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +        ++       
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELKADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                        D+V++  K 
Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 461


>gi|319782843|ref|YP_004142319.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168731|gb|ADV12269.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 484

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 89/481 (18%), Positives = 155/481 (32%), Gaps = 60/481 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-- 62
               DL   +    I  V    V GIS DSR +     FFA+ G   DG  +   A    
Sbjct: 1   MKLRDLAGILPVEGIASV-DLEVTGISSDSRQVKAGVVFFALAGTKADGAVYAEDAAARG 59

Query: 63  -------KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
                  KG+ +             L +PV  VDD   AL + A     +    ++A+TG
Sbjct: 60  AAAIVAGKGSTIA-----------GLPVPVLAVDDPRLALAQSAARYFGKQPEIMVAVTG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACI-----------GSYNNHIGVPLTLARMPVD-VDFG 163
           + GKT+                A I              +     P+ L ++  +  D G
Sbjct: 109 TSGKTSVAAFTRQIWEQAGYAAASIGTTGVVAPGRNDYGSLTTPDPVALHQLLQELADAG 168

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +    +  S  G  +     V+      T +   H+     IE+   AK  +F+ L   G
Sbjct: 169 VTHASMEASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTIEDYHRAKLRLFDTLLPKG 228

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              + + D  +      +       + + G+  +   +L++ +    +   EV+  G   
Sbjct: 229 APAVIFADDPWSAPTTVAAKAAGLNVLTVGRHGDF-LRLKRVEHERHRQRAEVEADGVLY 287

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+     G     N L++ G+       V  A+ AL       GR        N      
Sbjct: 288 EIDLPLAGDFQISNALVSAGLAISTGTPVAKALMALEKLKGAPGRLDLVGTTGNGA-PVY 346

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +        +VL+ + P   GR I V G     G         +   ++    
Sbjct: 347 VDYAHKPDALE-----NVLASVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIATRLA 397

Query: 402 SHVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +    +P +I                         + L  GD ++V  K
Sbjct: 398 DVVIVTDDNPRS---EVPETIRAAILAAAPGAIEIGDRRQAIHEAVAMLHAGDTLIVAGK 454

Query: 451 S 451
            
Sbjct: 455 G 455


>gi|5834375|gb|AAD53941.1|AF179611_25 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 485

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 81/462 (17%), Positives = 151/462 (32%), Gaps = 40/462 (8%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT 72
           A             V G ++DSR +A    F A  G   +G DFI    +K      V  
Sbjct: 12  ASGYGLSPKEKDYPVLGFAVDSRKVAKGFVFGAFPGAKVNGEDFI----EKAIAAGAVAI 67

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                +          ++   A  ++A          + A+TG+ GKT+  E+     + 
Sbjct: 68  VARPEVKIEGAVHLVAENPRLAFAEMAARFYAPFPPVMAAVTGTNGKTSVAELCRQLWTI 127

Query: 133 IKKT---------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFL 178
                             SY+  +  P  +  +    D    ++       S  G  ++ 
Sbjct: 128 TGHKAASIGTLGVITAKNSYSLGMTTPDVVTFLSCCSDLARADISHVIFEASSHGLDQYR 187

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           +   +      T+ +  HL     +E   A+      E +   GT  +  DD     + A
Sbjct: 188 SDGAKVIAGAFTSFSRDHLDYHGTMERYLAAKLRLFDERIAPDGTAVIWADDPAATTVIA 247

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                G+K I      K    +L   +  S+   + + ++G+S ++    IG +   N L
Sbjct: 248 HVQKRGLKLID---IWKAEAIRLVNREADSQGQMITLSIKGESYKIRLPLIGGYQLSNGL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +  G+V     D+   + AL++  P  GR +R   + N      +D ++  +        
Sbjct: 305 VRAGLVLATGGDIKQTMAALTLLKPVRGRLERATQSQNGA-EVYVDYAHTPDG-----LR 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
           + +  + PH EG    V G     G             ++     HV ++     G    
Sbjct: 359 AAIEALRPHTEGLLWVVFGA----GGDRDKGKRPEMGKIAANLADHVIVTDDNPRGEDAA 414

Query: 413 AL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + K+ L  +                      GD+V++  K 
Sbjct: 415 TIRKEVLVGAPLAEEIGGRKEAIFSAIKRAEKGDIVLIAGKG 456


>gi|240168222|ref|ZP_04746881.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium kansasii ATCC 12478]
          Length = 528

 Score =  106 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/483 (16%), Positives = 148/483 (30%), Gaps = 51/483 (10%)

Query: 7   FHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L         G            + G+++ ++ + P + F A+ G    G      A
Sbjct: 19  LAVLAAQTGAVPDGAADYPETFRDVQITGVTLRAQDVQPGDLFAALAGSATHGARHAGEA 78

Query: 61  VQKGAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
           +++GA  V+ + D VA++G  + S+PV         L  LA     R     T++ ITG+
Sbjct: 79  IERGAVAVLTDADGVAAMGAHAASVPVLVHPAPRSVLGGLAATVYGRPSERLTVVGITGT 138

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGE 174
            GKTTT  ++   L +  +    IG+    I      + +       +  +   MS  G 
Sbjct: 139 SGKTTTTYLVEAGLRAGGRVAGLIGTIGIRIDGADIPSALTTPEAPALQAMLAEMSERGV 198

Query: 175 IRFLT------------HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              +                R  +   T ++  HL     +E+   AKA +F+       
Sbjct: 199 DTVVMEVSSHALALGRVDGTRFAVGGFTNLSRDHLDFHPTMEDYFEAKALLFDPASALRA 258

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +            ++ A       +      A             +  E      +  
Sbjct: 259 GTVVVCVDDD---AGRAMAERAGDAITVSARDRAAHWRAVDVVPMGAAGQEFTAIDPAGV 315

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG     N+   L  ++IL +   +  +A          G+  +    Q F  L+
Sbjct: 316 QHRVRIGLPGGYNVANCLLALAILDSIGVSPEQAAPGLRQARVPGRLEQVDRGQDFLALV 375

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++         A+  +       + R   V G     GE        +  V +     
Sbjct: 376 DYAHKPG------ALRAVLTTLTSPDRRLAVVFGA---GGERDPGKRAPMGAVAAEL-AD 425

Query: 403 HVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
            V ++     G    A++  +         +  V              +    GDVV+V 
Sbjct: 426 LVVVTDDNPRGEDPAAIRREILAGAAAAGGTAEVVEVADRRDAIRHAVAWAGPGDVVLVA 485

Query: 450 -KS 451
            K 
Sbjct: 486 GKG 488


>gi|330994428|ref|ZP_08318353.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758428|gb|EGG74947.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2-6-diaminopimelate
           ligase [Gluconacetobacter sp. SXCC-1]
          Length = 490

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 88/472 (18%), Positives = 150/472 (31%), Gaps = 38/472 (8%)

Query: 7   FHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +LL+   +            ++GI+ DSR   P   F A++G H DG  +I  A  +G
Sbjct: 3   LPELLRRAGLDIALPATARACDIHGITADSRQAGPGMIFAALRGTHRDGRAYIPQAHAQG 62

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V++  D                D   AL ++A A   R  A I AITG+ GKT+T E
Sbjct: 63  AAAVLLEAD-PGFTPPPDATYLVAADARAALARIARALTPRVPAHIAAITGTNGKTSTAE 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL----------------G 168
            L    +        IG+       PL      +     +  +                 
Sbjct: 122 FLRQIWTVQALPAGTIGTLGAVAPCPLPDCGPVLTTPDSVGLMALLGAMAQAGVEHVAIE 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNY 227
            S  G  +     + P+ A  + +   HL      E   +AK  +F+ +  + G    N 
Sbjct: 182 ASSHGLEQRRLDGLAPYAAGFSNLTRDHLDYHGTTEHYRAAKLRLFDTVLPEGGIAAFNA 241

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D         ++ A     +      +    +L   +       + V     + E+    
Sbjct: 242 DMDDATCAALRAIAARRGLVLRTTGLRGGTLRLLDARPTPAGQVLHVMTPAGAREMEVPL 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     NML+   +        D A+  L   H   GR       L+ G    +D ++ 
Sbjct: 302 VGRFQVDNMLLACAMAGRDEGAADHAVSLLPRLHGVRGR-MERAAVLDSGAAAYVDYAHT 360

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +L  + PH  GR + V+G     G         +   ++      V ++
Sbjct: 361 PDAIE-----RLLCSLRPHTPGRLVIVMGA----GGDRDRGKRPVMGEIATRLADRVIVT 411

Query: 408 GFHVL------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +             +  +                   L  GDV+VV  K 
Sbjct: 412 DDNPRTEQPAAIRAAIMAAAPGAIEIGDRRQAIAAGLGLLGPGDVMVVAGKG 463


>gi|242315788|ref|ZP_04814804.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
 gi|242139027|gb|EES25429.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 1106b]
          Length = 339

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 136/327 (41%), Gaps = 9/327 (2%)

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           ++NN +G+PLTL R+       + ELGM+H GE   L  +  P +A++      H    +
Sbjct: 11  NFNNDVGLPLTLLRLNAAHRLAVVELGMNHPGETEMLAKIAAPTVALVNNAQREHQEFMA 70

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +E +A   A +   L   G      DD++  + +    A     I  F     A     
Sbjct: 71  TVEAVALEHAAVIHALGPDGVAVFPADDAYAGIWR---VAATGNRIVDFALHGAAGGAPA 127

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                 + S + +   G  ++V  + +G H A+N L            +      L  F 
Sbjct: 128 AVTGALDGSLLAIDTPGARIDVRLNALGEHNARNALAATAAALAAGVPLAAIKVGLEAFA 187

Query: 322 PKEGRGKRYRCALNQ-GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           P +GR +  R A       T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E
Sbjct: 188 PVKGRLQVARAAAGSLAGATVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGE 243

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G+   +FH ++        I  ++  G       DA       H+ +    +   + ++
Sbjct: 244 VGDEGPAFHREIGAYARERGIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAAN 302

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
                 ++VK S      R+++ L  E
Sbjct: 303 FGAHATLLVKGSRFMKMERVVDALANE 329


>gi|325971615|ref|YP_004247806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
 gi|324026853|gb|ADY13612.1| UDP-N-acetylmuramyl-tripeptide synthetase [Spirochaeta sp. Buddy]
          Length = 493

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 146/480 (30%), Gaps = 51/480 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   LL+AI   S        +  IS  S+       FFA  G   DG  +I  A++ 
Sbjct: 1   MKTLRTLLEAIGIDSTPQNASILIETISQHSKQCTANSVFFAFHGLRTDGILYIQEAIEH 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
           GA  ++ + ++        +    V     A   +  A     + K  II ++G+ GK+T
Sbjct: 61  GAVCIISDQNLSNLNLPAKVQWHQVHKPHTAFALMCSALNDNSQDKLGIIGVSGTDGKST 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------------VPLTLARMPVDVDFG 163
           T + L   L +       + + +   G                         +   V   
Sbjct: 121 TCDYLYQILEANGVKTGLLTTVSMDDGSGKVDSPFRQSTPEPDQLHVFLRRCVENKVQKV 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E     L +       +    A++T +   HL     +EE   AK  +   L+  G  
Sbjct: 181 ILECTSHALSDTFDRLAGIHFEAAIVTKVTSEHLEFHHSLEEYTQAKVNLVRSLKDGGLF 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             + D++  E   A+          +       D  LR      +   +++  Q     +
Sbjct: 241 VTSTDNAKLEAFTAE------LRSTTKALILGKDVMLRIEFMGYQGVVVDILDQRIQTSL 294

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +   +  +          ++ I    +   IK+L     +  + +          F    
Sbjct: 295 LLPSLATNALLATFCASHLLGIDVTALLVLIKSLKPVKGRMQQIENTLGVRTIIDFAHTA 354

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++Y+      K              G  IAV G     GE   S    + ++ + Y  S 
Sbjct: 355 DAYDGIFFFAKRTCE---------GGDIIAVFG---CAGERDTSKRSPMGKIANKY-CST 401

Query: 404 VWLSGFHVLA-----LKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + L+           +   L       +  V   E+         S    GD ++   K 
Sbjct: 402 IILTEEDPRREGNQQIFSDLRFHMNNPACRVWEIESRREAIRKAVSIAQCGDTLLFLGKG 461


>gi|16126797|ref|NP_421361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|221235578|ref|YP_002518015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
 gi|21362718|sp|Q9A595|MURE_CAUCR RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13424125|gb|AAK24529.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter crescentus CB15]
 gi|220964751|gb|ACL96107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Caulobacter crescentus NA1000]
          Length = 486

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 90/461 (19%), Positives = 154/461 (33%), Gaps = 48/461 (10%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                + G++ DSR +     F A+ G   DG DF   AV KGA  ++        +  L
Sbjct: 14  ATDPVIAGVTADSRKVTTGWLFAALPGTKVDGRDFAEGAVAKGAAAILA---PEGGLEGL 70

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT---YA 138
            +PV   +D   A    A A   +  A  +A+TG+ GKT+         + +        
Sbjct: 71  GVPVVRSEDARRAYALAAAAFWGKQPAMCVAVTGTNGKTSVAGFCRQIFTKLGHKAASMG 130

Query: 139 CIGSYNNHIGVPLTL---ARMPVDVDFGIFEL--------------GMSHLGEIRFLTHL 181
            +G   +  G P        +       + E+                S  G  +     
Sbjct: 131 TLGVVVSQPGQPDQQLTPPGLTTPDAGDVAEMIARLADMGVTHLALEASSHGVDQRRIDG 190

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V+   A  T     HL     +E   +AK  +F+ L   G + +   DS      A +  
Sbjct: 191 VKLSAAGFTNFTQDHLDYHGSMEAYRAAKLRLFDTLTPAGAMAVLNADSEAFPDFAAAAV 250

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              ++++S G+ +    +L           + V+ +G    +     G   A N+L+  G
Sbjct: 251 TSGQSVFSVGE-EGQGLRLLSRTPTPAGQDLVVEAEGVVHHLKLPLAGAFQASNVLVAAG 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      D    +KAL       GR +R       G      E+Y     +     +VL 
Sbjct: 310 LCIAAGEDSAKVLKALETLEGAAGRLQRVGRGPKGG------EAYVDYAHTPDGLQTVLE 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            + PH  G+ IAV G     G         L   +         ++  +           
Sbjct: 364 ALRPHTAGKLIAVFGA----GGDRDRGKRPLMGAIGAKLADIAIVTDDNPRSEDPASIRA 419

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           A+ +A P +  +              + + +GDV+VV  K 
Sbjct: 420 AILEAAPGAREI---GDRRAAIRAAVALMSEGDVLVVAGKG 457


>gi|325123730|gb|ADY83253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 499

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 146/462 (31%), Gaps = 57/462 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              G S+DSR +A  + F A+    +        F   A+  GA  V+  T++  +    
Sbjct: 21  PFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAVISETELGVANE-- 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               +   DV   + +       R        IIA+TG+ GKTT   ++   L S ++  
Sbjct: 77  ----WVCSDVRQRMGEWQERYLQRIDLVVPVRIIAVTGTNGKTTISRLV-AELISFQQQR 131

Query: 138 ACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTHLV 182
             +     +  +P                    D+         L  S  G  +   +  
Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGC 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV + ++  HL     +E  A AKA +F        I    D+    ++ A     
Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAIINLDDEHAALMINAAKQNP 251

Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               I ++  ++N  D+ +         +   +     S  V    +G+   +N++  L 
Sbjct: 252 AQPKILTYSLTQNTADYYITDLSYSLVGATFNLVSPQGSFAVQSPLLGHFNVENLVAALI 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                       +KAL  F P+          +  G    + +  +   A     I VL 
Sbjct: 312 ATEQAGF----DLKALVAFVPELIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            +  H   +  AV G     G         L    +L   + V L+  +           
Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +K  +      +H          F+      GD+VV+  K 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|54023729|ref|YP_117971.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nocardia farcinica IFM 10152]
 gi|54015237|dbj|BAD56607.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           2,6-diaminopimelate ligase [Nocardia farcinica IFM
           10152]
          Length = 536

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 85/483 (17%), Positives = 144/483 (29%), Gaps = 43/483 (8%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
            PL T  +L      H+   VP    V GI   S ++ P + F A+ G H  G  F   A
Sbjct: 30  TPLTTVLEL---TGAHAAAPVPADVVVTGIEQRSGAVQPGDLFAALPGAHAHGARFAHDA 86

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           V +GA  V  + +    +  L++PV   +     L +L+ A   +      +I ITG+ G
Sbjct: 87  VARGAVAVFTDAEGARVLDGLTVPVLVRERPREVLGELSAAVYGQPSQRLRLIGITGTSG 146

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE 166
           KTTT  ++   L++   + A IG+    IG             P   A   + V+ G+  
Sbjct: 147 KTTTSYLVEAGLAAAGLSTALIGTIETRIGGRRVPSALTTPEAPQLHAMFALMVEQGVQA 206

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S           VR  +   T ++  HL   +  E+  +AK  +FE         
Sbjct: 207 VVMEVSSHALALGRVDGVRFDVGAFTNLSQDHLDFHADFEDYFAAKRRLFEPQSPVAART 266

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                        +  A G+    +   +  AD+++                       V
Sbjct: 267 AVVCVDDAW---GRRLAEGLAAPITVSTTGEADWRVAGGVATVGAEQEFTAAGPAGELGV 323

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +         +    V                     GR +R     +         
Sbjct: 324 RLRLPGRYNVANALLAVAVCAAARADPAVAAPALATVDVPGRMQRVERGQDFLAVVDYAH 383

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
              A  + +      L+   P   GR   V+G     G    +    L           +
Sbjct: 384 KPAALESVIATLREHLAAADPEHPGRLAVVVGA----GGDRDAGKRALMGAAGARGADLL 439

Query: 405 WLSG-----FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
            ++           ++ AL              V              +    GD V+V 
Sbjct: 440 VITDDNPRTEDPATIRAALRAGALEVPAEVRGEVREIGDRAAAIEAAVAWARRGDAVLVA 499

Query: 450 -KS 451
            K 
Sbjct: 500 GKG 502


>gi|302561121|ref|ZP_07313463.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
 gi|302478739|gb|EFL41832.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
           [Streptomyces griseoflavus Tu4000]
          Length = 195

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 7/187 (3%)

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                Y                   +     A ++         R          T++++
Sbjct: 1   MTMRLYGEHHVSNALAAAAVAHELGMSADEIARALSEAGSLSRWRMEVTERPDGVTVVND 60

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +YNANP SMKAA+  L  +      R  AVLG M E+G+ + + H  +  +    N+S +
Sbjct: 61  AYNANPESMKAALRALVAM--GKGRRTWAVLGKMAELGDEALAEHDAVGRLAVRLNVSKL 118

Query: 405 WLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              G    A       +         +          ++S L  GDVV+VK+S S G   
Sbjct: 119 VAVGGREAAWLQLGAYNEGSWGEESVHVSDAQAAVDLLRSELRPGDVVLVKASRSVGLES 178

Query: 460 LINLLLE 466
           +   LLE
Sbjct: 179 VAQALLE 185


>gi|330973394|gb|EGH73460.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 317

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 86/218 (39%), Gaps = 16/218 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 12  HTDRDALIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 71

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  + G L+ +A            ++ +TG+ GKT+  +++  AL  + +  
Sbjct: 72  ITDVPLIPVKGLAGQLSAIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDVLGQRC 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 132 GIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRKAGARAVAMEVSSHGLDQGRATALA 191

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +AV+T ++  HL     +E  A+AKA++F   +   
Sbjct: 192 FDVAVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSDLKC 229


>gi|295104216|emb|CBL01760.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii SL3/3]
          Length = 492

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 148/470 (31%), Gaps = 41/470 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    +       +  I  DSR  AP   F  I G   D H F      KG
Sbjct: 1   MKLEQLMEGVPFTLVQGSLDTEIADIIYDSRKAAPGLLFVCIVGTQRDSHAFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         + T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSALP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L +             Y      +     P +       R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   + V T ++P H+      +     ++   +  ++     +N D
Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L           + ++G+ + AD++   +K      ++ V       + +   +
Sbjct: 239 DENTAALLE----GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKV 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++   L     +   +     A+     K     R         FT++ + Y  
Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           N  S ++ ++ L    PH     + V G     G  S+     + E+ +      +    
Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG---CGGNRSKLRRYGMGEICAKMADFSILTED 406

Query: 407 ------SGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447
                     +  +++ + +                  +      +GD++
Sbjct: 407 NNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456


>gi|294627720|ref|ZP_06706302.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292598072|gb|EFF42227.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 491

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/456 (15%), Positives = 139/456 (30%), Gaps = 41/456 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F+  A   GA  V+           +  
Sbjct: 15  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPDGLPVPA 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139
               V  +   L  +A     R      ++ +TG+ GKT+T ++L  AL+ +        
Sbjct: 74  DAIAVPGLRARLGVMADQFHGRPSQAMRMVGVTGTNGKTSTVQLLAQALTLLGTPTGTLG 133

Query: 140 -----------IGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                         +   + +P     A++  D    +  + +S     +     V   +
Sbjct: 134 TLGVGLYGAAVPTGFTTPLVLPTHALLAQLREDGAQAVA-MEVSSHALDQGRVDAVHFDV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     + +  +AKA++F        +    D     L  A   AL    
Sbjct: 193 AVFTNLTRDHLDYHGDMAQYGAAKAKLFARAGLKAAVVNLDDAFGHTLFAALDPALRAIG 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + S     +AD  +       + + +   L  +      H           +     ++ 
Sbjct: 253 VSS---RAHADASVSAQALQLDHNGINFALNIRGQVHPVHSPLLGRFNVDNLLAVAGALW 309

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             +   A  A  +   +   G+  R     G   ++ +  +   A        LS +  H
Sbjct: 310 AMEFAPAQIASVLGQLQPIHGRMNRLGGAHGAPLVVVDYAHTPDA----LEQALSSLRSH 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
            + R I V G     G    +        ++        ++  +            +   
Sbjct: 366 AQDRLICVFG----CGGERDTGKRPQMAAIAELKADVAIVTDDNPRGEDGDAIVADILRG 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             R                        D+V++  K 
Sbjct: 422 FARPDAAIVQRDRAAAIHQAIGMASPSDIVLIAGKG 457


>gi|89096488|ref|ZP_01169380.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
 gi|89088503|gb|EAR67612.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. NRRL B-14911]
          Length = 525

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 156/464 (33%), Gaps = 52/464 (11%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +N IS DSR+  PQ  F  + G ++DGH F+  A+ KGA ++      +    S
Sbjct: 37  GSPSQKINSISYDSRNAGPQSVFVCMGGENHDGHTFLEEAIAKGAAVLAGENAAILEEFS 96

Query: 81  LSIP---VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKK 135
              P       +D    L +L++    R    I  + ITG+ GKTT    +   ++++  
Sbjct: 97  RKFPELTFLQTEDARAFLAQLSIIFHGRIHEKIHTVGITGTNGKTTVAAFVKSLMTALGI 156

Query: 136 T------------YACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFL 178
                           +    +    P       +  DF         + +S +   +  
Sbjct: 157 PSGSIGTNGVLSSMGPVSFVQSTPTTPEASDLHAIFADFAKRGDQLAAMEVSSVAIEQQR 216

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  +   +A+ T ++P HL      E    AK ++F   +    +    D+     +   
Sbjct: 217 TAGINFDVAIHTNLSPEHLEFHKTFENYKQAKLKLFR--QAKRAVVNLDDEGMGADIIKD 274

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G    YS  K   AD +    +  ++ +  E++L   S  V     G +   N+L 
Sbjct: 275 FQ--GSLLTYSLKKDSAADVKASNIRVTNDGTSFELKLGNDSYIVRTPVFGSYNVANLLS 332

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L   +   I+AL       GR +  +    +        +           ++
Sbjct: 333 AICTAMHLGFTIGQIIEALPRVENPSGRFEVLKEFGRRKIIIDYAHT----------PVA 382

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW------------- 405
           + S +    +     ++  +  +G   +     +A+         V              
Sbjct: 383 LKSLLKEAKKLPHKRLIVMITGIGIRDKEKMPQMAQ-AVENQADQVIVSVDHPGFLDPWE 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G  +    +  PR+ ++    T     L   S   + D++++
Sbjct: 442 VVGHVMKGFSN--PRAGNILQEPTRRDGVLAALSVSDEDDLILL 483


>gi|94498178|ref|ZP_01304739.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
 gi|94422308|gb|EAT07348.1| UDP-N-acetylmuramyl-tripeptide synthetases [Sphingomonas sp. SKA58]
          Length = 484

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 140/420 (33%), Gaps = 32/420 (7%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++ +A+            V G +ID+R +AP   F A +G   +G D+I  AV+ GA  
Sbjct: 12  AEVAKAVSA---AGGLDTSVTGFAIDNRKVAPGTVFGAFQGLRVNGEDYITEAVRAGAIA 68

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +V                    +      +LA           +A+TG+ GKT+T E+  
Sbjct: 69  IVA----RPEAQVDGAIHIAAANPRQLFAQLAARFFAPFPDVTVAVTGTNGKTSTVELAR 124

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDV------------DFGIFEL--GMSHLG 173
                +    A IG+      V      +                  G+       S  G
Sbjct: 125 QIWRMLGHNAASIGTLGVTTSVDQVSTGLTTPDIVTFLANMAGLRREGVTHAAFEASSHG 184

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             ++ T  +       T ++  HL     ++    AK  +F+ +       + + D  + 
Sbjct: 185 LDQYRTEGLPVVAGAFTNLSRDHLDYHGDMDSYFDAKMRLFDEVVAPDGSAVIWADDSWS 244

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                        + S G    A  QL           +E++ +G   +V    IG + A
Sbjct: 245 EKAIARATKRGLRVLSVGVQGRA-LQLANRTPTQLGQTLEIEAEGTRYKVNLPLIGAYQA 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L   G+V     D    ++ L    P  GR          G    +D ++  +    
Sbjct: 304 ANALTAAGLVIATGGDAARVMELLGRVQPVRGR-LERAVISQTGAPVYVDYAHTPDG--- 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               + +  + PH +GR I + G     G+        + +V +  +  HV ++  +  +
Sbjct: 360 --LRAAIEALRPHTKGRLITLFGA---GGDRDAGKRPQMGKVAADLS-DHVIVTDDNPRS 413


>gi|309774771|ref|ZP_07669793.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917456|gb|EFP63174.1| UDP-N-acetylmuramyl pentapeptide synthase [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 523

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/366 (21%), Positives = 149/366 (40%), Gaps = 27/366 (7%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D    L +           +II ITGS GKT+ K +L   LS +  T    GSYNN +G+
Sbjct: 169 DAQRLLQEHG-------DLSIIGITGSYGKTSVKTILNELLSGVYYTLMTPGSYNNQMGI 221

Query: 150 P-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                 ++    +  + E+G  H+ EI  L   V+P   V+T++ P HL+ F  ++ I  
Sbjct: 222 TLTIRTKLQHLHEVFLCEMGADHVREIHDLMQFVKPRYGVVTSVGPQHLATFGSMDNILH 281

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K ++ E L   G  F+N D+++ +             I  FG  ++AD++    +   E
Sbjct: 282 EKMQMIECLPLDGIGFVNRDNAYIQS----YTIKNKCHIVWFGMHESADYRCSNIRYSEE 337

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +   V  + +        +G H   N+   + +   L    +    A+      E    
Sbjct: 338 GTSFTVTAENQEHSFHTRLLGKHNVVNITCAIAVAHTLGISWEIMALAVEKLPYVE---- 393

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +R  + + F TL+D++YN+NP   + A+ V+ Q+          +     E+GE  +  
Sbjct: 394 -HRLQVRKSFCTLLDDAYNSNPEGARCALEVIKQMKHKR----FIITPGFLELGEKQEEE 448

Query: 389 HIDLAEVLSLYNISHVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVD 443
              L + ++   +    L G     ++   L      + +++  ++       +Q     
Sbjct: 449 QYTLGQEIADS-VDVALLVGRIQTKSIVKGLQARQFPAQNIYICDSFQEALSIVQKQADP 507

Query: 444 GDVVVV 449
            D V++
Sbjct: 508 QDCVLL 513


>gi|153006717|ref|YP_001381042.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030290|gb|ABS28058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 534

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 78/490 (15%), Positives = 139/490 (28%), Gaps = 63/490 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                ++Q              +  ++ DSR + P   FFA+ G   DGHDF   A  +G
Sbjct: 38  MKLSAVIQGTGARGEAAD-DHEIVLVTGDSREVVPGALFFALPGAVRDGHDFAAQAAARG 96

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  +V    +  +  +L      V     A+   A     R      +  +TG+ GKTT 
Sbjct: 97  AVAIVAERPVACAPAAL----LLVPSSRRAMAVAAANFHGRPADALRVAGVTGTNGKTTV 152

Query: 123 KEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDVDFGIFEL 167
             ++     +       +G+                     +   LA M       +   
Sbjct: 153 TYLVEACARAADLPVGVLGTVTQRFPGVERPASHTTPESTTLHAVLAEMRAAGTRAVVLE 212

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLN 226
             SH      +  + R   A  T +   HL     ++   A+ +    E L   G   +N
Sbjct: 213 VSSHALAQERVGGM-RFAAAGFTNLTRDHLDYHGDMDAYFAAKRRLFAEHLAPDGVAVVN 271

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D +   L A+      + ++ +G   +   +                     + +   
Sbjct: 272 ARDPYGARLAAQL--GPGRRVWRYGTRADDTLRAEAVSTGLAGIAATFATPAGPIAIRSP 329

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N+L   G+   L    D   + LS      GR         +G    +D ++
Sbjct: 330 LVGAHNLENLLCAAGLALALGIAPDAVGRGLSASAGAPGR---LERIDGRGVSIFVDYAH 386

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +          L  +      R + V G     G         L   ++      V +
Sbjct: 387 TDDALG-----RALEALRALAPRRLLCVFG----CGGDRDRGKRPLMGEVAARGADLVVV 437

Query: 407 SGFHVL------ALKDALPR-----------------SIHVHYSETMDGLFLFIQSSLVD 443
           +  +         + D LP                  +                 S    
Sbjct: 438 TSDNPRTEAPEAIIADVLPGLERAGAARLSARAAADGARGFLVEADRRAAIALAVSLAHP 497

Query: 444 GDVVVV--KS 451
           GD V+V  K 
Sbjct: 498 GDAVLVAGKG 507


>gi|229828741|ref|ZP_04454810.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
 gi|229793335|gb|EEP29449.1| hypothetical protein GCWU000342_00807 [Shuttleworthia satelles DSM
           14600]
          Length = 511

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/469 (14%), Positives = 137/469 (29%), Gaps = 51/469 (10%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +G   Q  +  +S DSR + P   F   KG  +   DF+  A ++GA   +      
Sbjct: 26  GERLGESLQREITLVSCDSRKVIPGTLFIC-KGAGF-REDFLRMAKERGAAFYLSEKPYE 83

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133
                + +P  GV D+  A+   A     R      ++ ITG+ GK+TT   L       
Sbjct: 84  G----VDLPWIGVSDIRAAMAHSASFCYDRPWEAFRLVGITGTKGKSTTAFFLKAIFDVY 139

Query: 134 KKTYACIGS----------------YNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGE 174
           +K+     S                       P+ L     +      +   + +S    
Sbjct: 140 EKSRGGRPSGLISTILTEDGKESRPSRMTTPEPIELEEHFANAREAGLDYVTMEVSSQAL 199

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  V+  +A    I   H+S            +++    +    +     D   E+
Sbjct: 200 KYDRVLDVQFDVAAFLNIGYDHISPIEHPTWEDYFASKLRIFSQCRTAVVHLGVDHSEEM 259

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L A   A  + T       + AD      K+   ++  + ++ G+  E +    G+    
Sbjct: 260 LAAAQKARKVIT--FSETDERADVYGYGMKKQGRETHFKARVLGQEREYILGIPGFFNVS 317

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +        D   + L          +                 Y  N  S +
Sbjct: 318 NALAAIAVAEHYGIPYDCVKEGLKRARVPGRMEEYTSADGKIVTIID----YAHNRLSFE 373

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---- 410
              +   +  P        ++      G  + +   DL EV +  N  +++L+       
Sbjct: 374 KLFAAAKEEFPGRR-----IVALFGASGGKAINRRRDLGEVAA-ANADYIYLTEDDPGRE 427

Query: 411 -----VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +                      +  +  ++++  K 
Sbjct: 428 DPTRIAEEIASYIKPFGTPYEIIPDRKEAIRTAIHAAKEPTLLLLAGKG 476


>gi|323487947|ref|ZP_08093203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
 gi|323398371|gb|EGA91161.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Planococcus donghaensis MPA1U2]
          Length = 499

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/494 (13%), Positives = 162/494 (32%), Gaps = 66/494 (13%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                  + I  +S  +    AFF + G + DGH +I  A+  GA  ++ +  ++ +  +
Sbjct: 18  GPEYSTFSSIEYNSTLVVQDCAFFCVPGENTDGHLYIGEAIANGATTIIGSNQLLLAEYA 77

Query: 81  LSIP---VFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135
              P      V +V  AL  L+       +  +I   +TG+ GKTTT   +    + +  
Sbjct: 78  KQHPDLSFAVVPNVREALAYLSDFFYRSPQKELIKVGVTGTNGKTTTATYVYNLFNLLGI 137

Query: 136 TYACIGS-----------YNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFL 178
               IG+           +          + +       + E      + +S +   +  
Sbjct: 138 GCGFIGTTGILRMDGKIPFYKSTPTTPISSDLHKIFARFVEEGDRAVAMEVSSIALDQMR 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +R  +A+ T I+  HL      E    +K  +F+  +              + +  +
Sbjct: 198 VEGIRFDVAIHTNISEEHLEYHKIFEHYLQSKLMLFKQSKAAVVNV------DDKGMAKE 251

Query: 239 SHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
              +      ++    ++  D      +        ++  +G+   +     G + A N+
Sbjct: 252 ILEVISYPHLTYSNRVDSGADLIWTACESSDTGLKFDLYYKGERWPIHVPLFGEYNAANL 311

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +G   +   +++  +  L      EGR +  +   N+        +           
Sbjct: 312 TAAIGSALLSGQNIEAIVTVLPKMSQVEGRFQVIQGPDNRKVILDYAHT----------P 361

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFH-- 410
           +++ + ++   +     ++  +  +G    S    +A+  +      + ++    G +  
Sbjct: 362 VALSAVLNEVKKLSHNRLIALIAGIGIRDFSKMPKMAK-AAEGKADVLVVTVDHPGDNEP 420

Query: 411 ---VLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-KSS-NSCGFYRLI-- 461
              + A+      P    V  + +     L         D++++   S N     +++  
Sbjct: 421 SVVIDAVLKGFTVPYKQQVITANSRREAVLAALKESGPEDIILLSSGSINGA---QIVKG 477

Query: 462 -------NLLLEEF 468
                    ++EEF
Sbjct: 478 EYIPHSDEAIIEEF 491


>gi|331091598|ref|ZP_08340434.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403625|gb|EGG83181.1| hypothetical protein HMPREF9477_01077 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 508

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 70/462 (15%), Positives = 146/462 (31%), Gaps = 48/462 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              Q  +  ++ DS+ +     F   KG  +   +++  AV+ GA   +           
Sbjct: 29  GKEQTTIEQLTFDSKKVTENTLFIC-KGMAFK-EEYLKEAVKNGAVCYISEQKYE---LD 83

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI----- 133
             +P   V D+  A+  LA      +  +  +I I G+ GK+T+   +   L        
Sbjct: 84  EDVPYILVKDIRKAMPVLANKFFNEAWKELNVIGIGGTKGKSTSVYYMKSILDDYLAANG 143

Query: 134 ---------KKTYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLT 179
                       Y  +    +HI  P         R  V+      E+ +S         
Sbjct: 144 KKESAVISSIDIYDGVEKIESHITTPEAVELHGYFRNAVNCGMEFVEMEVSSQALKYGRV 203

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           + +   +AV   I   H+S     +      +++    +    +     D    +L+A  
Sbjct: 204 NEMMFDVAVFLNICEDHISPIEHKDFEDYFSSKLLIFQKTKTAVVNLDADFSDRILEAAQ 263

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  + TI +  K++NADF      +  + +   V+      E      G+   +N L T
Sbjct: 264 CAPKVVTIST--KNENADFYAYNIHKEGDGTIFNVRCAEFDKEFELTMPGFFNVENALAT 321

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +     V+     L           R   + +     +    Y  N  S +   S 
Sbjct: 322 IAVANQFNIPVEFMYSGLKKAR----SSGRMELSTSDDNKIIAVVDYAHNKLSFEKLFSS 377

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           + +  P  E     ++      G+ + +   DL  +   Y    V+L+            
Sbjct: 378 IKEEYPDRE-----IISIFGCPGKKAFTRRRDLGTIAGKY-AKKVYLAAEDPGYEPVEEI 431

Query: 411 VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              + + +  +       E           S+ +  ++++  
Sbjct: 432 SRDIAEYVEAQGCPYEMIEDRGEAIKKAIESVENPSILLITG 473


>gi|297539597|ref|YP_003675366.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
 gi|297258944|gb|ADI30789.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera sp. 301]
          Length = 488

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/453 (17%), Positives = 146/453 (32%), Gaps = 34/453 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 I+ DSR +     F A  G H DG  +I  AVQ GA  VV   +         +
Sbjct: 8   NKSFTSITADSRKVQAGSLFLAYPGLHNDGRQYIGQAVQAGAAAVVWEQEGFTWNADWQV 67

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-I 140
               V D+   +  +A         K T+I +TG+ GKT+  + +   L+ + K  A   
Sbjct: 68  SNLAVQDLKQQVGGIAAEFYQNPSSKLTMIGVTGTNGKTSVSQWIAQCLTLLGKKTAVLG 127

Query: 141 GSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSHLGEIRFLTHLVRPHIA 187
              N  +G     A    D                    + +S  G  +   + V   +A
Sbjct: 128 TIGNGFLGAQTEAANTTPDAILLQAMLADYVEQQADAVAMEVSSHGLDQGRVNGVAFDVA 187

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E  A+AK ++F        I    D     L+ A +        
Sbjct: 188 VLTNLSRDHLDYHETMEAYAAAKQKLFAWEGLITAIVNTDDAFGKSLVSALNAQDKPCLT 247

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           Y      +AD Q    K       M++        +    +G   A N+L  L  +  L 
Sbjct: 248 YGL---TSADVQGSDLKLHDTGLTMQINTPQGHALLSAPVLGRFNAYNVLAVLATLLALK 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +  +++A++   P    G+  +         +ID ++  +      +           
Sbjct: 305 VSLPDSLEAIAKIKPV--LGRMQQFGGGDLPLVVIDYAHTPDALEKVLSTLKEQIDLAAS 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRS 421
             + I V G     G    +    L   ++      V+++  +         +   +   
Sbjct: 363 SVKLICVFG----CGGDRDAGKRPLMGNIASKLADQVFVTSDNPRSENPAAIIAAVVSEM 418

Query: 422 IHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
              +  +                GD+V+V  K 
Sbjct: 419 KAGYVVDADRANAIRAAIQGANSGDIVLVAGKG 451


>gi|283797828|ref|ZP_06346981.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
 gi|291074516|gb|EFE11880.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Clostridium sp. M62/1]
          Length = 487

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 141/469 (30%), Gaps = 50/469 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D L+ ++   +          +  DSR       F  +KG + D HDFI   ++ G  ++
Sbjct: 4   DWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKIL 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEML 126
           VV  ++        + V  V++   AL  L  A       K   I +TG+ GKTTT  M+
Sbjct: 64  VVEREVSE--IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMS 170
              L +  K    IG+    IG      +                +    ++ + E+  S
Sbjct: 122 KSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEV--S 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               +      +     +   I+  H+     +  EE    K ++ +             
Sbjct: 180 SQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQLLKN-------CKTAI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        I++F   + ADF+    +  S   ++ +  Q      +   +
Sbjct: 233 VNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L     L + +D     ++          R          T+I +  + 
Sbjct: 293 NVPGRFNAANAL-ASVALCSFLDLPKPKVAHGLEHLKIDGRMEIVYKSSKMTVIVDYAHN 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             +      S+L  +  +   R + V G     G             +         ++ 
Sbjct: 352 AVS----MESLLKTLRDYKPKRLVCVFG----CGGNRAKERRYSMGEIGGNLADFCIITE 403

Query: 409 FHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +            +K  L   S              F  S   DGD++
Sbjct: 404 DNSRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMI 452


>gi|296876033|ref|ZP_06900089.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
 gi|296432944|gb|EFH18735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parasanguinis ATCC 15912]
          Length = 481

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 72/486 (14%), Positives = 149/486 (30%), Gaps = 66/486 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + G     +     + IS DSR ++    FF +KG ++   +++  A+  G G  V   D
Sbjct: 22  VNGEYYYHLEGTRFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
                  + IP   V+D+  A++ +A+        +  ++A TG+ GKTT        L 
Sbjct: 80  Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILE 134

Query: 132 SIKKTYACIGSYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEI 175
              +            G                  +    +  D    I E+  S    +
Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFAMMAQAVANDRTHLIMEV--SSQAYL 192

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               + +   + V   I+P H+        E+    K  + +    +  + +N D   F+
Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFQ 249

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +L  +          S  +++    +   +    + +                       
Sbjct: 250 VLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGDYDIQLIGHFNQE--------- 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 +           +              G+        G    ID ++N +    
Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406
                +LS +  H  G    VLG     GE  +         H ++   L+  + ++   
Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINL 463
                LA+ + +   I   V      +       + +    D V++        Y+++N 
Sbjct: 409 --EDPLAIAEEISSFITRPVEKISDREQAIQLAMATTSKPEDAVIIAG-KGADCYQIVNG 465

Query: 464 LLEEFP 469
           + EE+P
Sbjct: 466 VKEEYP 471


>gi|56459542|ref|YP_154823.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
 gi|56178552|gb|AAV81274.1| UDP-N-acetylmuramyl tripeptide synthase [Idiomarina loihiensis
           L2TR]
          Length = 487

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 153/476 (32%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  +       VP   V+GI +DSR +A  + F AI G   DG  +I  A+  G
Sbjct: 1   MKLAELLTMLPTSF--SVPDVTVSGIKLDSRQVANGDVFVAIPGYETDGRAYIDAAIDAG 58

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  ++     +A      + V G   V   L+++A         K  ++ +TG+ GKT+ 
Sbjct: 59  AAAIIAEAPGMAVEQRRGVVVIGFSGVREHLSRIAGNFFGHPSEKMNLVGVTGTNGKTSV 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
             ++     ++    A IG+  +  G+   L          +                  
Sbjct: 119 THIMAQLAKALGMEAAVIGTTGS--GLIGRLLPERHTTPDAVTVQQRLATLLAEGAELVA 176

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S    I+     +    A IT I+  HL     +E   +AK  +F        +   
Sbjct: 177 MEVSSHALIQRRVEALHFAAAAITNISRDHLDYHGTMENYVAAKQRLFADFGVQNRVVNA 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+     +     L +    S  +      Q    +   + S   +  QG+S  V   
Sbjct: 237 DDDTLSHWQQDDLADLWVSLNASPNEPC---LQATGVQFHEQGSVFSLNWQGESCVVETP 293

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  + ++  L   +    KA     P  GR + +    +         + 
Sbjct: 294 LLGRFNVYNLLCAVAVLLKLNKPLADIGKACGRLQPVPGRMEAFHNNQSPLVVVDYAHTP 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A          VLS +  H +GR   V G     G             ++      V +
Sbjct: 354 DA-------LHQVLSALRLHCKGRLWCVFG----CGGDRDRGKRPQMGKVAADYADVVVV 402

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +   +     V          +         DVV++  K 
Sbjct: 403 TDDNPRTEPAEQIIEDILTGIADKTQVKVWPGRREAVIRAMQEAGKDDVVLLAGKG 458


>gi|169629088|ref|YP_001702737.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium abscessus ATCC 19977]
 gi|169241055|emb|CAM62083.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Mycobacterium
           abscessus]
          Length = 515

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 143/481 (29%), Gaps = 51/481 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             DL   +     G      V G+++   D+R+    + F A+ G    G  F   AV  
Sbjct: 18  VSDLASLVSAELHG-PSATTVGGVTLRAQDART---GDLFAALPGTSTHGAQFASEAVSA 73

Query: 64  GAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           GA  V+ +      +    L I V         L +LA            ++ +TG+ GK
Sbjct: 74  GAAAVLTDAAGAELVAGQGLDIAVLVHPVPRSVLGELAATVYGEPSRHLQVVGVTGTSGK 133

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------- 166
           TTT  ++   L +  K    IG+    I      + +       + E             
Sbjct: 134 TTTTYLVEAGLRAAGKRVGLIGTVGVRIDGEDVPSALTTPEAPALQELLAEMVQRGVDTV 193

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEIFEGLEKTGTI 223
            + +S            R  +   T ++  HL     +++     A+    +  ++    
Sbjct: 194 VMEVSSHALALNRVDGTRFAVGAFTNLSRDHLDFHPDMQDYFATKARLFRRDSPQRAHRS 253

Query: 224 FLNYDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
            +  DD     +      A    T  S      AD++        +     V        
Sbjct: 254 VVCIDDDAGRAMAELAREAGPDVTTVSSLDGGVADWRCSNVAVGHDGGQRFVANGPDRDT 313

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +          N+   L  ++IL     +A  A          G+    A  Q F  ++
Sbjct: 314 ELTI--ALPGHYNVANCLVAIAILDVLGVSAATAAPGIATAGVPGRMEAVAAGQPFLAVV 371

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++           +VL  +  H +GR   V G     G   +    D+ +V +     
Sbjct: 372 DYAHKPGA-----LRAVLESLRSHRDGRLAVVFGA---GGNRDRGKRADMGKVAAEL-AD 422

Query: 403 HVWLSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V ++          A++  +          +           F       GD V+V  K
Sbjct: 423 LVVVTDDNPRNEEPAAIRTEIISGTTGSEAQIIEIGDRRAAIDFATLWARPGDTVLVAGK 482

Query: 451 S 451
            
Sbjct: 483 G 483


>gi|326774942|ref|ZP_08234207.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|326655275|gb|EGE40121.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 491

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 83/483 (17%), Positives = 148/483 (30%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    V  G++ID+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLMAGQDHHALRGTPDRTDVTAGVTIDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+        ++  + V  V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDQQAPTLPAAMGDVCVLRVPDVRKAAAVVASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKK----------------TYACIGSYNNHIGVPLTLARMPVDVDFG 163
           T+   M    L   ++                      S  +    P     +    D  
Sbjct: 121 TSVSYMTESVLRLAERARVGVIGTAGSRIGDEVIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L  + +G +          + V T +   HL +   +E    AK  +F+G     
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++            ++    +AD++       +  S   +   G+  
Sbjct: 239 RAVVNADDPVGAGIRKLMPGAVT----TYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R + +        
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVHALERMPQIPGRFERLQISGGTSVIVD 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S  +   VL+ I     GR I V G     G    +        ++  + 
Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRADMGAIAGTHS 403

Query: 402 SHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               L+  +        + D + + I                     +     D+V++  
Sbjct: 404 DVCVLTSDNPRYEDPEGILDQIAKGIVSTGTPFERLTDRRSAIAAALAEAGPDDIVLIAG 463

Query: 450 KSS 452
           K S
Sbjct: 464 KGS 466


>gi|270292442|ref|ZP_06198653.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
 gi|270278421|gb|EFA24267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M143]
          Length = 481

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 152/493 (30%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH          + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDSLFREIIDQGHYYYNYSDVDFDSISYDSRKVKAGTLFFA-KGATFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G G  V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLGWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        L+   +            G     + +       +F++   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R    +     A +          +    ++        + +             
Sbjct: 174 AVHNGRSHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285
              LL   S A+ I +            + ++      QS  +++               
Sbjct: 228 HKRLLMENSRAVVINSDMDHFSVLKEQVENQEHDFYGSQSSNQIENSKAFSFSATGKLAG 287

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + I      N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         ++S +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    S  V      +       +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYISHPVEKIADREEAIKAAMAITNQELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y+++    E++P
Sbjct: 459 CYQIVQGKKEDYP 471


>gi|256379770|ref|YP_003103430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
 gi|255924073|gb|ACU39584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Actinosynnema mirum DSM
           43827]
          Length = 527

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 82/465 (17%), Positives = 151/465 (32%), Gaps = 47/465 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             +L   +             V G+++ ++ + P + F A+ G    G DF   AV++GA
Sbjct: 37  ASELAATVDARLTSPAGAPVLVTGVTLRAQHVLPGDLFAALPGARAHGADFAAEAVRRGA 96

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123
             V+ + D  +      +PV    D   AL  L+          +    +TG+ GKTTT 
Sbjct: 97  VAVLTDEDGASRPELRDVPVLVHRDPRAALGALSARVYGEPAQRVALWGVTGTSGKTTTS 156

Query: 124 EMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFGIFELGM-- 169
            M+   L +  +    +G+                   P   A + V V+ G+ +  M  
Sbjct: 157 YMIESCLRAEGRVTGLVGTVETRIAGERLDSAFTTPEAPDLQALLAVMVERGVGDAVMEV 216

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S               +   T ++  HL     +E+   AKAE+F+G  +   + ++   
Sbjct: 217 SSHALRLGRVGGAGFAVGAFTNLSQDHLDFHPDMEDYFQAKAELFDGRARREVVCVDG-- 274

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   L          T    G +  A           EQ++      G  + V     G
Sbjct: 275 EWGRRLVKPGTVTVSATAPVGGATWTASGVRVSAT--GEQTFTAHGPDGLELAVALRLPG 332

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N L+ +G +       +  ++ L+     +  G+  R  + Q F  ++D S+   
Sbjct: 333 DFNVANALLAIGCLHASGVGAEAIVRGLAE---VQVPGRMQRVDVGQDFTAVVDYSHKPA 389

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                  +  L  +     GR I VLG     G    +    L    +      + ++  
Sbjct: 390 A-----VVLALDAVRARATGRVITVLG----CGGDRDTAKRPLMGAEAARRSEVLVVTDD 440

Query: 409 ----FHVLALKDA-------LPRSIHVHYSE--TMDGLFLFIQSS 440
                   A++ A       +P +      E            S 
Sbjct: 441 NPRSEDPAAIRAAVLAGALEVPEAERGEVVEIGDRGAAIAHAVSL 485


>gi|15837395|ref|NP_298083.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
 gi|21362727|sp|Q9PF85|MURE_XYLFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9105689|gb|AAF83603.1|AE003919_14 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa 9a5c]
          Length = 495

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 143/455 (31%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++        +     
Sbjct: 19  DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK------- 134
               V  +   L  +A           T++ +TG+ GKT+T ++L  A   +        
Sbjct: 79  A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHCLGVRSATCG 137

Query: 135 ------KTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187
                         +   + + L      +  +      + +S     +     V   + 
Sbjct: 138 TLGVGLYDQVVPTGFTTPLVLQLHQCLAQLRDEGAQAVAMEVSSHALDQGRVDGVHYDVV 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +E   +AKA +F   +      +N DD F   L         +  
Sbjct: 198 VFTNLTRDHLDYHGDMEHYGAAKARLFAHQD-VQAAVINVDDPFGLRLLHGLAKGMRRVG 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S     +AD   +      +    ++ +      V    +G     N+L   G++  L 
Sbjct: 257 VSVCGHTDADVMAQHLSLNLQGIGFDLVIGADHASVRSPLMGRFNVDNLLAVAGVLYALN 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +      LS   P  GR    R     G   ++ +  +   A       VLS +S H 
Sbjct: 317 YALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSHV 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
            GR I V G     G            V++  N   V+++  +            +    
Sbjct: 371 CGRLICVFG----CGGERDRGKRSQMAVIAESNADVVFVTDDNPRGEDGDGIVADILAGF 426

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R   V                    DVV++  K 
Sbjct: 427 ARPNVVKVQRDRSAAIAAAIGIASAEDVVLIAGKG 461


>gi|325284699|ref|YP_004264162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
 gi|324316188|gb|ADY27302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6- diaminopimelate
           ligase [Deinococcus proteolyticus MRP]
          Length = 504

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 63/489 (12%), Positives = 134/489 (27%), Gaps = 60/489 (12%)

Query: 1   MNPLWTFHDLLQAIQGH----SIGIVPQGFVNGISIDSRS--IAPQEAFFAIKGPHYDGH 54
           M P+    DL   +                V+ ++   R+  + P   F AI+G  +DGH
Sbjct: 1   MMPVMLLSDLASHLSLRSGPSVETGWAAAEVSAVTH--RADWVTPGALFAAIRGERHDGH 58

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIA 112
            F+  A ++GA   +     + +     +P   V D   AL   A         +  ++ 
Sbjct: 59  AFLQEAAERGAVAALGE--GLPAGQHSPLPYLQVPDARAALADAAALLSGHPSRELKVVG 116

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---------DFG 163
           +TG+ GKTTT  +    L +     +     +    +P    R                 
Sbjct: 117 VTGTDGKTTTSWLTAALLRA--GGQSTGLLSSAGYQLPDGQLRAYPAHFTTPEAPQLQGL 174

Query: 164 IFEL-----------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           + E+             SH   +  +  +     A+ T ++  HL     +E+  +AK  
Sbjct: 175 LREMVDARAQAAVIETSSHALTLERVRGVA-WDAAIWTHLSQEHLDFHGTLEDYFAAKRR 233

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E          +        +  +        +        AD++    +  +     
Sbjct: 234 LIERAPLAVLNLDDPWTRHLRGVAPQE-------LTYSAAQAGADWRASDLRGEAGGRAS 286

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                          +         +     +         ++A                
Sbjct: 287 FAVDGPAGRFRATLPLAGAFQMGNALAAMAAAHHFGVSAAELQAGLREFGGPPGRMETVP 346

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +       + D ++        +  + L  + P   G+  AV+G      + S+      
Sbjct: 347 SRPGQPRVVSDSAHTP-----LSLENTLRALRPLTGGQLWAVVGSAAGGRDTSKWGP--- 398

Query: 393 AEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
              ++      V L+           +L    A     +            +  +     
Sbjct: 399 MAAVASAWADQVILTEADHRETPLEQILEAMSAAAGQDNWQCIGDRAQAIAYAVTHAGPD 458

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 459 DTVLIANKG 467


>gi|322390040|ref|ZP_08063576.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
 gi|321143247|gb|EFX38689.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus parasanguinis ATCC 903]
          Length = 481

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/486 (14%), Positives = 148/486 (30%), Gaps = 66/486 (13%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           + G     +     + IS DSR ++    FF +KG ++   +++  A+  G G  V   D
Sbjct: 22  VNGEYYYHLEGTSFDAISYDSRKVSASTLFF-VKGANFK-KEYLEQAISNGLGFYVSEKD 79

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
                  + IP   V+D+  A++ +A+        +  ++A TG+ GKTT        L 
Sbjct: 80  Y-----EVGIPAILVNDIKQAMSLIAMEFYGHPEKQLKLLAFTGTKGKTTAAYFAYHILE 134

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEI 175
              +            G     + +                  D    I E+  S    +
Sbjct: 135 QSHRPAMLSTMNTTLDGKNFFKSTLTTPESLDLFSMMAEAVANDRTHLIMEV--SSQAYL 192

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               + +   + V   I+P H+        E+    K  + +    +  + +N D   F+
Sbjct: 193 VKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMKN---SQAVVINSDMDHFQ 249

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +L  +          S  +++    +   +    + +                       
Sbjct: 250 VLADQVANQDHDFYGSQSENQIETSKAFSFSATGKLAGNYDIQLIGHFNQE--------- 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 +           +              G+        G    ID ++N +    
Sbjct: 301 ----NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS--- 353

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWL 406
                +LS +  H  G    VLG     GE  +         H ++   L+  + ++   
Sbjct: 354 --LKKLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY--- 408

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINL 463
                LA+ + +   I   V      +       +      D V++        Y+++N 
Sbjct: 409 --EDPLAIAEEISSYITRPVEKIADREQAIQVAMAMTSKPEDAVIIAG-KGADCYQIVNG 465

Query: 464 LLEEFP 469
           + EE+P
Sbjct: 466 VKEEYP 471


>gi|295091959|emb|CBK78066.1| UDP-N-acetylmuramyl-tripeptide synthetases [Clostridium cf.
           saccharolyticum K10]
          Length = 487

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 73/469 (15%), Positives = 143/469 (30%), Gaps = 50/469 (10%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           D L+ ++   +          +  DSR       F  +KG + D HDFI   ++ G  ++
Sbjct: 4   DWLKELKYELVQGELDVPAEDVVYDSRKAGKDTVFVCMKGTNVDSHDFIPDVLKAGTKIL 63

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEML 126
           VV  ++        + V  V++   AL  L  A       K   I +TG+ GKTTT  M+
Sbjct: 64  VVEREVSE--IPEDVTVIRVENGRNALALLSAARFGYPAGKMVTIGVTGTKGKTTTTYMI 121

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLAR----------------MPVDVDFGIFELGMS 170
              L +  K    IG+    IG      +                +    ++ + E+  S
Sbjct: 122 KSILEACGKKVGLIGTNGAVIGDKHYATKNTTPESYLLEQYFDEMVKAGCEYMVMEV--S 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
               +      +     +   I+  H+     +  EE    K ++ +             
Sbjct: 180 SQSYLMHRVDGLTFDYGLFLNISNDHIGPGEHADFEEYLHYKKQLLKN-------CKTAI 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +    +        I++F   + ADF+    +  S   ++ +  Q      +   +
Sbjct: 233 VNEDDEHFEEIIRGAQAKIHTFSLERPADFEASGIRYVSGSDFVGLVFQVMGNYEMEVKV 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N    L  V++ +       K        +  G+      +     ++D ++NA
Sbjct: 293 NVPGRFNAANALASVALCSFLDLPKAKVAHGLEHLKIDGRMEIVYKSSKMTVIVDYAHNA 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +L  +  +   R + V G     G             +         ++ 
Sbjct: 353 VSMES-----LLKTLRDYKPKRLVCVFG----CGGNRAKERRYSMGEIGGNLADFCIITE 403

Query: 409 FHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +            +K  L   S              F  S   DGD++
Sbjct: 404 DNSRYEDVNDILTDIKVGLSMTSGTYIEIPDRRRAIEFAISHAHDGDMI 452


>gi|124007585|ref|ZP_01692290.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
 gi|123987068|gb|EAY26824.1| UDP-N-acetylmuramyl pentapeptide synthase [Microscilla marina ATCC
           23134]
          Length = 525

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 149/367 (40%), Gaps = 23/367 (6%)

Query: 96  NKLAVAAR--------LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            ++A               +  +I ITGS GKT+ K  LT  LS         GSYN  +
Sbjct: 157 QRIAQWYYADARRIIKSMPQLKVIGITGSYGKTSVKHFLTRILSEKYNVVMTPGSYNTPM 216

Query: 148 GVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           GV +T+   +    +  + E+G   +G+I+ L +L  P I ++T +A  HL  F  IE I
Sbjct: 217 GVTITIRNHIKPIHEIFVCEMGAKQIGDIKELCNLAHPQIGILTAVADQHLDTFGSIENI 276

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ + L K G  +LN+D  + +     +H       YS  +              
Sbjct: 277 QKGKFELIDALPKDGVGYLNFDYEYVKNHSPIAHVEN--HAYSLHQPDADYQARDLQYTA 334

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +       K ME+    +G     N+L+   +       +     A+    P + R
Sbjct: 335 KGMQFSVYHKNEKVMELETKLMGEANMSNILVCCAVALRFDVPIKNIQFAVKNLQPVKHR 394

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                   N G  T++D+++N+NPA  K A++VL QI     G+++ +   M E+ E   
Sbjct: 395 ---MELKRNPGGITILDDAFNSNPAGAKMALNVLKQI---EGGQKVIITPGMIELAEKEY 448

Query: 387 SFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSL 441
             +  L E ++  ++ +  L G    L +++ L         ++ +  +      +    
Sbjct: 449 ELNKVLGEQIAE-HVDYAILVGPKQTLPIQEGLKNKNYPEDRLYIARNLTDANQHLMKIA 507

Query: 442 VDGDVVV 448
             GDVV+
Sbjct: 508 KAGDVVL 514


>gi|218678972|ref|ZP_03526869.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Rhizobium etli CIAT 894]
          Length = 117

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/108 (49%), Positives = 69/108 (63%)

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +  G GRRIAVLGDM EMGE +Q  H DLA  L    I HVWL+G  + ALK++LP S+H
Sbjct: 3   ARPGRGRRIAVLGDMLEMGEYAQKVHSDLAVPLLAAGIEHVWLAGAEMAALKESLPESVH 62

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           V Y E    L  ++  S+V GDV +VKSS   GF +++  LL++FP  
Sbjct: 63  VEYRENTSELTDYVLDSVVPGDVFMVKSSLGIGFGKIVAALLDKFPPF 110


>gi|323144061|ref|ZP_08078705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
 gi|322416174|gb|EFY06864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Succinatimonas hippei YIT 12066]
          Length = 506

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 68/485 (14%), Positives = 139/485 (28%), Gaps = 54/485 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  ++   ++              +S    DSR +     F+A KG   DG DF+L A +
Sbjct: 9   TLQEVAAFLE-----EDKNVGTCSLSTLEEDSREVLKNSLFYAHKGHTVDGFDFMLKAQE 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL--NKLAVAAR--LRSKATIIAITGSVG 118
           +GA  ++ + D   S   L      +  +   +   + A        SK  +I ITG+ G
Sbjct: 64  QGAAAIICDYDKDPSAEQLKDVTIPLLHLKKGMSVGEFASWFYFSPSSKLRLIGITGTNG 123

Query: 119 KTTTKEMLTIALSSIKKTYACI--------GSYNNHIGVPLTLARMPVDVDFGIFE---- 166
           K+T  +++   L+   +  A           +        L+   +   +   + E    
Sbjct: 124 KSTVTQLIAQYLALFNRKCAVFGTLGYGFLPNLKQSSNTTLSAIALQKALAEAVKEGADY 183

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGT 222
             L +S +G                T +   HL     +E    A  +       +    
Sbjct: 184 AALEVSSIGVCEGRIDGCIFSGGAFTNLTRDHLDYHKTMENYAKAKREFLNRVNPDHLCL 243

Query: 223 IFLNYDDSFFELLKAK----SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              +        LK +    S    +         K+A   +   +   +   + +    
Sbjct: 244 NVDDAMGKTVATLKPEAILFSPKGALAVNSPDKSVKHALLNVTGIEYKHDGLKLRIDSSF 303

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +     +G   A+N L  L ++      +   +   S   P  GR + +        
Sbjct: 304 GKGDASLSLLGSFNAENFLCALSVLLSFHFPLKDLLDKASQLKPICGRMECFYKEGKPRM 363

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 + +   ++      + +  S    G+   VLG     G         +  + + 
Sbjct: 364 IVDYAHTPDGVESA------LKAARSHTPGGKVWCVLG----CGGDRDKGKRPMMAIKAC 413

Query: 399 YNISHVWLSGFHVL-----ALKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVV 448
                V  +  +        + + +   +             +             D VV
Sbjct: 414 VYADKVIFTSDNPRTEDPVRILEDMESGVKGSADNYECIVKREDAITKAFKEAQSADCVV 473

Query: 449 V--KS 451
           V  K 
Sbjct: 474 VAGKG 478


>gi|317484858|ref|ZP_07943750.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
 gi|316923904|gb|EFV45098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bilophila wadsworthia
           3_1_6]
          Length = 482

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 142/452 (31%), Gaps = 44/452 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           + IDSR   P   F A+ G   DG  FI  AV +GAG VV   +   + G   +      
Sbjct: 18  LCIDSRKATPGCVFVALPGSSADGSQFIADAVARGAGYVVCRPESAGNCGEAEV--VDCA 75

Query: 90  DVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKK---------TYA 138
           D   AL  LA A          ++ +TG+ GKTTT  +L    +S  K            
Sbjct: 76  DPRQALGLLARARYGTASLPFPVVGVTGTNGKTTTTYLLDHLFASAGKKTGVLGTVSYRW 135

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFG-----IFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                +  +  P  L    +  D       +  + +S     +     V    AV + + 
Sbjct: 136 PGHHEDAPMTTPDCLDVHTMLADMRAAGVDMAFMEVSSHALDQNRVAGVGFGGAVFSNLT 195

Query: 194 PAHLSNFSGIEEIASAKAEIF---EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
             HL     +E    AKA++F   +G      +     D+ +    A      I    + 
Sbjct: 196 QDHLDYHHDMETYFKAKAKLFLDGDGKPFADRVMAIGTDNPWGARLAGMAPEAIGFGLTA 255

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +     + +     +    +  + +G+  E     +G + A+N+L    +      D 
Sbjct: 256 SGASGRYLEGKVLSSTTAGLRLHARFEGREWEFTSPLVGNYNAENLLAVQAVALGFGLDP 315

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +    A   F    G   R    LN     +  +  +   A     I+VL+ +   G  R
Sbjct: 316 E----AFRCFETFCGVPGRLERILNPQNLDVFVDYAHTPDA----LINVLNALRGAGFKR 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD---ALPRS 421
            + V G     G         L             L+  +         + D    L  +
Sbjct: 368 IVTVFG----CGGNRDRAKRPLMGEAVARLSDVAVLTSDNPRHEEPEAIMADVMPGLSGA 423

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V                L  GD +++  K 
Sbjct: 424 AEVFADPDRRRAIEKGLELLHPGDALLIAGKG 455


>gi|291533201|emb|CBL06314.1| UDP-N-acetylmuramyl tripeptide synthase [Megamonas hypermegale
           ART12/1]
          Length = 104

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T   L+  +    +       +  I+ DSR +     F  I G   DG+ FI  A++ G
Sbjct: 1   MTIEQLVSVLNNVEVKGDVNKEIEFITHDSRRVRKNTLFVCICGTRVDGNKFIPQAIEAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A  ++   D+        I V  V ++  A+               +
Sbjct: 61  ACAIMTEKDVEV---PADITVIKVPNMREAMELAVPYFYDYPGKKCV 104


>gi|188586220|ref|YP_001917765.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350907|gb|ACB85177.1| UDP-N-acetylmuramyl-tripeptide synthetase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 540

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 83/479 (17%), Positives = 153/479 (31%), Gaps = 55/479 (11%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
            G+    +    ++G++  S++++  E FF + G  YDGH F   A  KGA  ++V  + 
Sbjct: 25  SGNIKQALDDIKISGLNYHSQNVSQNELFFCLTGHQYDGHAFAEKAYNKGAVALIVERE- 83

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
              I  + +    V++   AL+ L+            +I IT + GKTTT  M+   LSS
Sbjct: 84  ---IPHIPLLQVVVENSRRALSHLSAKFYQHPSKSMNMIGITSTNGKTTTTYMIDQILSS 140

Query: 133 IKKTYACIGSYN--------------NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
            K T                        + +   LA M          + +S  G     
Sbjct: 141 NKPTGLLGTVIVKLGEETKESDLTTPESLDLQRYLASMKRKNINYCT-MEVSSSGLELER 199

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              V   IA+I  I+  H+      E   +AK  + E +++     +N D      +   
Sbjct: 200 VSAVDYDIAIINNISRDHIDQHGSFENYFAAKQRLVEEIQEDKRAVINVDCENACKMIN- 258

Query: 239 SHALGIKTIYSFGKSKNADFQLRK----------WKQCSEQSWMEVQLQGKSMEVVHHGI 288
                + T    G                            +     ++    ++    +
Sbjct: 259 YTKAKVITYSVKGIDATIGIDNLDLSSGSASFDLVINRGFSTLSGKWIKPGRFKIKLKVL 318

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N         +L   +      L+ F   E R +       +     I + + A
Sbjct: 319 GLHNVYNATSAAISTLLLDEPITRIQSELAKFSGVERRFQLIFDKKFK-----IIDDHFA 373

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           NP +++  +  L ++  +      A+ G   +      +    L + L   N+  V++  
Sbjct: 374 NPGNIEVTMETLGKMDFNNLKILYAIRGGRGKTVNEENT--KALIKWLKKLNLQEVYVTS 431

Query: 407 ----SGFHVLALKDA--------LPRSIHVHYSETMDGLFL--FIQSSLVDGDVVVVKS 451
                G                     I V Y   +        I+  L  GDV+++  
Sbjct: 432 SDEIVGIENKVTMTERDTTLSLLKSAGIRVRYFSQLRSAIKSVIIERHLQTGDVLLLAG 490


>gi|297559868|ref|YP_003678842.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844316|gb|ADH66336.1| UDP-N-acetylmuramyl-tripeptide synthetase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 555

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 87/505 (17%), Positives = 146/505 (28%), Gaps = 60/505 (11%)

Query: 2   NPLWTFHDLLQAIQ--GHSIGIV---------PQGFVN--GISIDSRSIAPQEAFFAIKG 48
            PL     L   +      +            P   V+  GI+ DSR + P + + A+ G
Sbjct: 6   TPLRPLSALAALLGPDASLLRPDLGADRPPEVPDREVHVRGITHDSRQVGPGDLYAALPG 65

Query: 49  PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106
               G DF   A + GA  V+ + D      +  +PV  V DV   L   A         
Sbjct: 66  TRAHGADFAGQAAEAGAAAVLTDGDGAERAAATGLPVIVVPDVRAVLGTAASWVFKDPAQ 125

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGI 164
              +I  TG+ GKTT   ++   L         +G+    +G    ++ +  P   D   
Sbjct: 126 DLLLIGTTGTSGKTTVTYLVESGLRHAGMRTGLVGTVEMRVGDERVVSSLTTPEATDLHG 185

Query: 165 FELGMSHLGEIRFLTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               M   G       +             R  +AV T ++  HL   S + +   AKA 
Sbjct: 186 LFALMRERGVSAAAMEVSSHALALSRVGGTRYDVAVFTNLSQDHLDFHSDLRDYFDAKAR 245

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF----------GKSKNADFQLRK 262
           +F   E      +N DD F   L     A G   + +F            +  AD++   
Sbjct: 246 LFT-PEYCDIAVVNADDRFGRALVDMVQADGRVPVTTFAVDGYTDADPATAMEADWRAVD 304

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +  +  S   +   G         +      +  M   +  +          A     P
Sbjct: 305 VRLGAMGSAFRIVGPGGMEANASVALPGPFNVSNAMAAIVGLVEAGLPLETAIAGVAAAP 364

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                     A           +         A  +VL+ +    EG    V+G     G
Sbjct: 365 GVPGRMEPVVANAVPHAFQDFTALVDYSHKPGAIEAVLTALRATTEGGLTMVVG----CG 420

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSE----- 428
                    L    +      + ++  +           ++ + + +    H +      
Sbjct: 421 GDRDRAKRPLMGEAAARLSDQLVITNDNPRTEDPVSIAASMLEGVAKVPEEHRARVTVEF 480

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                          GDVVVV  K 
Sbjct: 481 DRAEAIRLAVERARPGDVVVVAGKG 505


>gi|254244772|ref|ZP_04938094.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
 gi|126198150|gb|EAZ62213.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa 2192]
          Length = 487

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCCIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A    R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|291003734|ref|ZP_06561707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 486

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 91/454 (20%), Positives = 147/454 (32%), Gaps = 59/454 (12%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--------VFGVD 89
            P + F A+ G    G DF   A+  GA  V+ +   V     L  P        +   D
Sbjct: 2   RPGDLFAALPGTRVHGADFAATALDAGAVAVLTDQAGVVRADLLDHPEVSAGRVALLVHD 61

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH- 146
           D   AL   A            I+ +TG+ GKTTT  +L  AL++   T   +G+     
Sbjct: 62  DPRAALGPAAAKIYGEPSKQLRILGVTGTSGKTTTTYLLESALAAAGFTTGLVGTVETRI 121

Query: 147 -----------IGVPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIA 193
                         P   A + V V+ G+  + M  S            R  +   T ++
Sbjct: 122 AGERLDSAFTTPEAPDLQALLAVMVEHGVTHVPMEVSSHALALGRVSGTRFTVGGFTNLS 181

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +++   AKA +F+G  +   +  + D         +          S    
Sbjct: 182 QDHLDFHRDLDDYFQAKALLFDGRSEHEVVCTDTDW-------GRKLVKPGTITVSTTGD 234

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            +      +     EQ +      G S+ +     G     N L+ +GI+          
Sbjct: 235 ASWTATDVEAFPTGEQEFTAHGPGGLSLRMRLRLPGPFNIANALLAIGILHAAEVPTWAI 294

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            + L+     +  G+  R AL Q F  ++D S+     S      VL       EGR I 
Sbjct: 295 ERGLAE---VDVPGRMERVALGQDFTAVVDYSHKPGAVSA-----VLDAARAQAEGRVIV 346

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------------VLALKDALPRS 421
           VLG     G         L    +      + ++  +            +LA  +A+P +
Sbjct: 347 VLG----CGGDRDVAKRPLMGEAAARRSGLLIVTDDNPRSEDPADIRAAMLAGAEAVPAA 402

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                 E            +    GD+VVV  K 
Sbjct: 403 ERGEVIERGDRREAIAEAVARASSGDIVVVAGKG 436


>gi|225378460|ref|ZP_03755681.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
 gi|225209683|gb|EEG92037.1| hypothetical protein ROSEINA2194_04128 [Roseburia inulinivorans DSM
           16841]
          Length = 493

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/474 (16%), Positives = 152/474 (32%), Gaps = 40/474 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                + + I+   +    +  V  I  DSR IAP+  F  + G   DGH +I  AV+K 
Sbjct: 1   MKLSKICEEIEYTLLQGSLETEVRDIIYDSRKIAPETMFVCMVGAVTDGHKYIPDAVEKE 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A ++V+  +  A+    +I V  V+    AL  ++ A       K   I +TG+ GKTTT
Sbjct: 61  ASVIVLEKEEEAAQIPENITVLKVESARLALALMSAALFDHPARKLVTIGLTGTKGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL-----------TLARMPVDVDFGIFE---LG 168
             M+   L    K    IG+    IG               L RM   +     E   + 
Sbjct: 121 TYMIKKVLEMAGKKVGLIGTIGAMIGEEHLPSKNTTPESYELHRMFAAMVEAGCEYVVME 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G     T  +     + T ++P H+          ++  E  E             
Sbjct: 181 VSSQGLKLDRTAGILFDYGIFTNLSPDHIGP-----AEHASFEEYMECKSLLFRQCRIGI 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +             + +F   + AD         +E   + +             +
Sbjct: 236 VNADDEHVDGILKGHTCEVKTFSAEREADLMASDIGFINEDGKLGMHFNVTGCMDCQAKV 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  ++  + +      +    L      + +G+     +++ +  +ID ++N 
Sbjct: 296 HIPGRFSVYNSMVTMLVCHLAGISDEAILEGLSKVQVKGRVEMLPVSKDYTLIIDYAHN- 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
               +     + + +  H +       G     G  S+    D+ EV        V    
Sbjct: 355 ---EVSTRSVLTTLMEYHPKRLICVYGGG----GNRSKLRRYDMGEVTGEMADLCVLTCD 407

Query: 408 ---GFHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGD-VVVV-KS 451
                 +  + + +       +      +       +   +   GD +V++ K 
Sbjct: 408 NPRDEEIRDINNDIKVGLARSNGKYIEIDDRKEAIAYCMKNAKPGDMIVLLGKG 461


>gi|116253053|ref|YP_768891.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257701|emb|CAK08799.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 489

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 75/467 (16%), Positives = 136/467 (29%), Gaps = 52/467 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           ++    G      ++G+S DSR + P  AF A+ G   DG               +V+  
Sbjct: 17  LEAQLEGPAGLLDISGLSSDSRKVMPGNAFVAVAGTKADG------------AGFIVDAA 64

Query: 74  MVASIG-------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
              +           SIPVF V +    L+  A     R   T++A+TG+ GKT+     
Sbjct: 65  GRGAAIAIASQAVDASIPVFAVKEPRRFLSIAAARFHGRQPDTMVAVTGTAGKTSVASFT 124

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHL 172
               +      A IG+             +       +                +  S  
Sbjct: 125 RQIWAYAGHAAAMIGTTGVVSPTRNEYGSLTTPDPVSLHALLAELAGEGVTHAAMEASSH 184

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
           G  +     VR   A  T +   H+     +E   +AK  +F+ L   G+  + + D  +
Sbjct: 185 GLDQCRLDGVRLAAAAFTNLGRDHMDYHPTVEAYMAAKMRLFDTLLPKGSPAVIFADDPW 244

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                K+       I + G+  +     R      +Q              +        
Sbjct: 245 SAQAIKAATDAGHDIRTVGRKGDYLSLKRVEHFRHKQMAEIHIGGEIFEVDI----PLAG 300

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
              +   L    +  +    A  A++      G   R     +     L    Y   P +
Sbjct: 301 DFQVANALVAAGLAMSTGVEAKIAMAALEKLVGASGRLELVGHTKDGALAYVDYAHKPDA 360

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +    +VL  + P   GR I V G     G         +   ++      V ++  +  
Sbjct: 361 L---ENVLGSVRPFTTGRVIVVFG----CGGDRDRGKRPIMGEIACRLADVVIVTDDNPR 413

Query: 413 A------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +        + +  +                   L  GD ++V  K 
Sbjct: 414 SEEPASIRAEIMTAASCAAEIADRAMAIREAVGMLRSGDTLIVAGKG 460


>gi|15599613|ref|NP_253107.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
 gi|12230930|sp|Q59650|MURE_PSEAE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|9950649|gb|AAG07805.1|AE004856_16 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 487

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A    R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADEVLVTDDNPRTEASAAIIADIRKGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|311742803|ref|ZP_07716612.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
 gi|311314431|gb|EFQ84339.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aeromicrobium marinum DSM 15272]
          Length = 503

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 66/475 (13%), Positives = 137/475 (28%), Gaps = 46/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++ + +      + P   V G+++ +    P + F A+ G    G  +   A ++GA 
Sbjct: 17  LVEVARQLGVRPPPVDPS--VTGLTLGTSDCCPGDLFAAVPGGRAHGAAYADQAAERGAV 74

Query: 67  LVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            V+ +    A + +       +P   VDD    L +L         +    +  +  +  
Sbjct: 75  AVLTDPAGAAVLDATEGAARRLPRVVVDDPREVLGRLGAWLHDHPTSAFTTLGVTGTQGK 134

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------IFELG 168
           T        +                G P+  +    +                 +  + 
Sbjct: 135 TTTTYLAESAVGGTVGVIGTIGTRIGGRPVASSLTTPEAPALQALFAVMREEAVDVCAME 194

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    ++         +AV   +   HL     + +   AKA +F   +      +N D
Sbjct: 195 VSSHALVKGRVDGFAFDVAVFLNLGRDHLDFHDDLADYFDAKAMLFT-PDHARRAVVNVD 253

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L  ++    +         + AD++    +     + +EV         +   +
Sbjct: 254 DDHGRRLLDRTD---LPVTTFSTDGRAADWRAANVRPHRLGTDLEVLGPAGLEIDLSVPL 310

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 +  + +             + A     P  G   R         FT + +  + 
Sbjct: 311 PGRFNVSNALAVVAALAPEGHDPADLAAGIAASP--GVPGRMERVDRGQPFTAVVDYAHK 368

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A      +VL+ + P   GR + V+G     G         L    +  +   V ++ 
Sbjct: 369 PDA----VTAVLTALRPVTPGRLVMVIGA----GGDRDHGKRPLMGEAAARHADLVVVTD 420

Query: 409 FHVL-----ALKD---ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +       A++    A  R       E            +    GD VVV  K 
Sbjct: 421 DNPRSERPAAIRADLLAGARGGPAEVVEIGDRREAIAHAVAGARLGDTVVVAGKG 475


>gi|239945811|ref|ZP_04697748.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 15998]
 gi|239992282|ref|ZP_04712946.1| putative UDP-N-acetylmuramyl tripeptide synthase [Streptomyces
           roseosporus NRRL 11379]
 gi|291449269|ref|ZP_06588659.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
 gi|291352216|gb|EFE79120.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6 [Streptomyces roseosporus
           NRRL 15998]
          Length = 491

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 145/483 (30%), Gaps = 52/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL+     H++   P    +  G++ D+  + P   F A+ G    G   +  AV 
Sbjct: 1   MKLSDLMAGQDHHALRGTPDRTDITAGVTFDADRVTPGSVFAAVPGHAAGGPHAVAPAVA 60

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           +GA  V+V+        +L  +    V DV  A   +A            +IAITG+ GK
Sbjct: 61  RGAVAVLVDEQAPPLPRALGDVCAVRVPDVRKAAAVMASRYFGEPGRAMDLIAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTY----------------ACIGSYNNHIGVPLTLARMPVDVDFG 163
           T+   M    L   ++                      S  +    P     +    D  
Sbjct: 121 TSVSYMTESVLRLAEQARVGVIGTAGSRIGDELIPMPPSVLSTPESPDLQYLLGHMRDRA 180

Query: 164 IFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                L  + +G +          + V T +   HL +   +E    AK  +F+G     
Sbjct: 181 CGSVVLEATSMGLLTHRLDRTFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG----- 235

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +      +  + L A    L    + ++    +AD++       +  S   +   G+  
Sbjct: 236 -LCRRAVVNADDPLGAGIRKLMAGAVTTYALDGDADYRASDLTVDASGSRFTLHHDGRKY 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L T+    +L   +   + AL       GR +R +          
Sbjct: 295 PAAIPSPGRFSVSNALATVAACHLLGHGLAGLVDALERMPQIPGRFERLQIPGGTSVIVD 354

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S  +   VL+ I     GR I V G     G    +        ++  + 
Sbjct: 355 YA-------HSPDSLNKVLTTIRGFARGRVITVFG----CGGDRDTTKRAEMGAIAGTHS 403

Query: 402 SHVWLSG-----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               L+          A+ D +   I                     +     D+V++  
Sbjct: 404 DLCVLTSDNPRYEDPEAILDQIAEGIASTGTPFERLTDRRPAIAAALAEAGPDDIVLIAG 463

Query: 450 KSS 452
           K S
Sbjct: 464 KGS 466


>gi|154505956|ref|ZP_02042694.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
 gi|153793974|gb|EDN76394.1| hypothetical protein RUMGNA_03498 [Ruminococcus gnavus ATCC 29149]
          Length = 491

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 146/479 (30%), Gaps = 57/479 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL+ ++   +    +  +  +  DSR +     F  I G   DGH ++    +KGA 
Sbjct: 3   LKQLLERLEYEVVQGSDKIEITTLINDSRKVEEGSVFVCISGAVSDGHQYVADVAKKGAK 62

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V+V  D+ A      + V  V+D     AL   A       K  II ITG+ GKTTT  
Sbjct: 63  AVIVQQDVEA---PAGMTVIRVEDTRYALALASAAYFGYPAEKLHIIGITGTKGKTTTTY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           M+   L  +      IG+    IG                       +    D  + E+ 
Sbjct: 120 MIKSILEGVGHKVGLIGTIEAIIGEEVIPAANTTPESYTIHQYFAKMVEAGCDSVVMEV- 178

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLN 226
            S  G +   T  +   I + T +   H+        E+    K  +             
Sbjct: 179 -SSQGLMLHRTAGIPFEIGIFTNLGKDHIGPNEHKDFEDYKRCKGLL-------FQQCRV 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283
              +  +             + +FG  K AD +       S   +             +V
Sbjct: 231 GIANADDRYFKDVFKNATCKVETFGFCKEADLRAEDVNLVSRPGYLGVAYHVAGVMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +        +    AL           R         FTL+ 
Sbjct: 291 EIDVPGTFSVYNSLTAIAVCRHFDVPKEHIQAALKKAK----VKGRIEMVKVSDEFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N  S+++ ++ L +  P        ++      G  S+    ++ EV        
Sbjct: 347 D-YAHNAMSLESLLTTLKEYHPKR------LVCLFGCGGNRSRDRRFEMGEVSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALPRSIH---VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S         A+ D +   I      Y E         +  +    G+V+V+  K 
Sbjct: 400 IITSDNPRFEEPQAIIDDIKVGIEKTDGAYVEIIDRKEAIRYAITHGQTGEVIVLAGKG 458


>gi|159028369|emb|CAO87267.1| murE [Microcystis aeruginosa PCC 7806]
          Length = 496

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 84/457 (18%), Positives = 147/457 (32%), Gaps = 43/457 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI 83
             + GIS +S +  P + F  + G   DG +F   A++ G    ++              
Sbjct: 24  TEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSALETGALAALISPAAAAKFPPPEDA 83

Query: 84  PVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKEMLTIALSSIK------- 134
            V  V D++ A   +A            +I +TG+ GKTTT  ++   LS          
Sbjct: 84  CVIVVADLVTATAAIAAKFYHYPALTLKLIGVTGTNGKTTTTHLIEYFLSQAGIPTALFG 143

Query: 135 --KTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              T         +   P            +    +  + E+  SH      +     P 
Sbjct: 144 TLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEIAVMEV-SSHALAQGRVQGCTFPV 202

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             V T +   HL     +E+  +AKA++F      G   +N DD++ + L A      + 
Sbjct: 203 T-VFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGKAIINLDDAYGQRLAASLSPQQVL 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T         ADF  +     S      +      +      +G +   N+L  +  V  
Sbjct: 262 TYSVC--DARADFYTKDLHYQSTGVEGVMVTPQGEIAFASPLVGQYNLANLLAAVAAVLE 319

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D++T I  +  F    GR +R   A +Q    ++D ++  +        +VL    P
Sbjct: 320 CGVDLETVIGQIPQFSGVPGRMERVSIAPDQDISVIVDYAHTPDSLE-----NVLKATRP 374

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
              GR I V G     G         L   ++        ++  +            +  
Sbjct: 375 FISGRMICVFG----CGGDRDRTKRPLMGKIAAELADLAIVTSDNPRTEAPERILEDIIA 430

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +P  I V               +   GD V++  K 
Sbjct: 431 GIPPEITVQVISDRALAIDTAIQTAQPGDGVIIAGKG 467


>gi|293365809|ref|ZP_06612515.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307703321|ref|ZP_07640265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
 gi|291315742|gb|EFE56189.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus oralis ATCC 35037]
 gi|307623097|gb|EFO02090.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus oralis
           ATCC 35037]
          Length = 481

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 155/505 (30%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDSLFREIIDQGHYHYNYSEVVFDSISYDSRKVKEGTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIVVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT+       LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTSAYFAYHILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         ++S +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +   HV+L+           + + +    S  V      +       +      
Sbjct: 388 GLLLNQHPEIHVFLTADDPNYEDPMVIAEEISSYISHPVEKIADREQAIKAAMAITNQEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E++P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471


>gi|115524115|ref|YP_781026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
 gi|115518062|gb|ABJ06046.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 69/453 (15%), Positives = 141/453 (31%), Gaps = 34/453 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 + G+++DSR++ P E FFA+ G   DG  FI  A+  GA  V  +         
Sbjct: 16  EAAATQITGLAVDSRAVKPGELFFALAGAKTDGARFIAQAIAAGAVAVAGDH---LPTDE 72

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             + +  VD+   AL   A     R  ATI A+TG+ GKT+                A I
Sbjct: 73  QGVALVRVDNPRRALALAASKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRQGLASASI 132

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFEL--------------GMSHLGEIRFLTHLVRPHI 186
           G+             +       +  +                S  G  ++    VR   
Sbjct: 133 GTIGLIAPQRSVYGSLTTPDPIALHRMVDEIASEDVTHLALEASSHGLDQYRLDGVRIAA 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T ++  H+     +    +AK  +F  L       +   D         +       
Sbjct: 193 GGFTNLSRDHMDYHPTVAHYLAAKLRLFRDLVAPSGAAVISADHDCSAEVVAAARARKLR 252

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G++ +    ++      +     + L+ +              Q     +     +
Sbjct: 253 LITVGRNGDPGAGIKLRSASIDGFAQRLILEHQGRMQNLLLPLVGEFQIENALVAAGLAI 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               D      ++   +  +G+        G    +D ++  +  +       L  + P+
Sbjct: 313 GTGSDADSVFEALTQLEGAKGRLELVGERNGAPIFVDYAHKPDALA-----KALQALRPY 367

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
            + + I V G     G    +    L   ++      V ++  +  +   A  R+  +  
Sbjct: 368 AKRQLIVVFGA----GGDRDAGKRPLMGAIAAQQADRVIVTDDNPRSENAAAIRAAILAA 423

Query: 427 SETMDGL------FLFIQSSLVDGDVVVV--KS 451
           +   D +           ++L  GD +++  K 
Sbjct: 424 AMGADEIGDRAEAIRAAIAALQPGDALLIAGKG 456


>gi|262273818|ref|ZP_06051631.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
 gi|262222233|gb|EEY73545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Grimontia hollisae CIP 101886]
          Length = 495

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/481 (13%), Positives = 148/481 (30%), Gaps = 47/481 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           P  +  DLL          +P   + G+++D+R I P + F A++G   D   FI  A++
Sbjct: 2   PNTSLKDLL----APWYDAIPDTLITGLTLDNRQITPGDVFVAVQGHSLDARRFIPAAIE 57

Query: 63  KGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            GA  V+ +   +     +     +PV     +   L+ +A           T+I +TG+
Sbjct: 58  AGAAAVIADDGDIHGQFDVTMQGGVPVVAFPHLKSTLSDIAGRFYQSPSQGMTVIGVTGT 117

Query: 117 VGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            GKTT  +++   +              +                + +       +    
Sbjct: 118 NGKTTVSQLVAQWIDLLGGKAAVMGTTGNGFLDALAPALNTTGSALDIQQQLAAFNQQGA 177

Query: 164 IF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G ++     V    A+ T ++  HL     +E  A AK  +F       +
Sbjct: 178 THVAMEVSSHGLVQDRVKAVAFDAAIFTNLSRDHLDYHGTMEAYAEAKLRLFTHYGSPVS 237

Query: 223 IFLNYDDSFFELLKAKSHALGI-KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    D      L +   A+ +  +  +  + +     L      +    +         
Sbjct: 238 VINADDPVGMRWLGSMPEAVAVSMSEKAVHQHQGRKLWLTAVDYATSGVSITFDSSWGEG 297

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E     +G     N+L++L  +  L  +    + + +      GR + +           
Sbjct: 298 EFTTPLVGEFNVMNLLVSLATLLALGYEKAALLASATQLQAVVGRMEVFHRPDKPMCVVD 357

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              + +A           L  +  H +G+   + G     G         +   ++    
Sbjct: 358 YAHTPDA-------LEKALHALRRHCDGKLWCIFG----CGGDRDIGKRPMMADIAEKLA 406

Query: 402 SHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V L+  +            +   +                 +   +  + DV+++  K
Sbjct: 407 DIVILTDDNPRSESPQAIVADMLRGMTDPDKAIILHDRAQACSYALENASEQDVILIAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|307944899|ref|ZP_07660236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
 gi|307771823|gb|EFO31047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Roseibium sp. TrichSKD4]
          Length = 489

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 84/452 (18%), Positives = 149/452 (32%), Gaps = 36/452 (7%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV---ASIGSL 81
             + G++ DSR+I P   F A+KG H DG DF   AV  GA  V+   D     A   S 
Sbjct: 19  VSITGLTADSRAIKPGFLFAALKGTHVDGADFAAKAVGAGAVAVLCERDAADRLAQELSK 78

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------ 135
            + ++  D+       +A          ++A+TG+ GKT+    +     +         
Sbjct: 79  DVVLWPSDNPRRDFALMAARFHGAQPEVMVAVTGTSGKTSVAHFVRQIFQAAGHASASLG 138

Query: 136 -TYACIGSYNNHIGVPLTLA-RMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
                     ++ G+       +  ++     E      L  S  G  +     VR   A
Sbjct: 139 TIGTVTADGQSYGGLTTPDPVSLHAELARLSKEGITHTALEASSHGLDQHRLDGVRLVAA 198

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   H+     +E+   AK  +F  L   G   +      +              +
Sbjct: 199 GFTNLGRDHMDYHPTVEDYLQAKLRLFRDLLLKGAPVVVEPSEPYADRVIAVAQERGLPV 258

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S G+    + +L K    +    + V+  G++  V+   IG     N L+  G+     
Sbjct: 259 FSVGE-AGENIRLAKLTPTAGGQELVVEAGGQTTTVLLPLIGRFQVSNALVAAGLCICAG 317

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D AI AL+      GR   +      G    ID ++  +        + L+ + P  
Sbjct: 318 VAPDEAIAALAELKGAPGR-LEFAGRSQTGGTVYIDYAHKPDALE-----NALAALRPFA 371

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA-LPRS 421
            G+   V+G     G        ++   +S      V ++           ++ A L  +
Sbjct: 372 SGQLSVVIGA----GGDRDPGKREIMGRVSQVGADLVIVTDDNPRTEDPATIRKAVLSGA 427

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GD++ V  K 
Sbjct: 428 PGALEIGDRREAIREGVRRLKSGDILCVAGKG 459


>gi|94264630|ref|ZP_01288413.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93454925|gb|EAT05166.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 552

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+   +L   +            V+ ++ DSR       F A+ G   DGHD+I  AV +
Sbjct: 6   LFRAAEL--PLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVAR 63

Query: 64  GAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           G  L++      V+   +A +   ++      D   AL  L  A+         +I ITG
Sbjct: 64  GCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV 160
           + GKTT   +L   ++S       IG+ N                  G+   LA M    
Sbjct: 124 TNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAG 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  + +S    ++     V   +A+ T ++  HL     +E   +AK  +FE  
Sbjct: 184 VTHVV-MEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQH 239


>gi|94266849|ref|ZP_01290509.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
 gi|93452479|gb|EAT03078.1| UDP-N-acetylmuramyl-tripeptide synthetase [delta proteobacterium
           MLMS-1]
          Length = 556

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 89/237 (37%), Gaps = 26/237 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L+   +L   +            V+ ++ DSR       F A+ G   DGHD+I  AV +
Sbjct: 6   LFRAAEL--PLPAKISRAAASREVSAVTADSRRADGDSLFVALAGEQVDGHDYIADAVAR 63

Query: 64  GAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITG 115
           G  L++      V+   +A +   ++      D   AL  L  A+         +I ITG
Sbjct: 64  GCRLILTQRGRRVDQQKLAGLAGEAVLCLSTPDTREALGWLCAALQGHPARSLLLIGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---------------GVPLTLARMPVDV 160
           + GKTT   +L   ++S       IG+ N                  G+   LA M    
Sbjct: 124 TNGKTTCAYLLEALIASGGGQPGVIGTVNYRYRGREVAAAHTTPEPEGLQWLLAEMRQAG 183

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  + +S    ++     V   +A+ T ++  HL     +E   +AK  +FE  
Sbjct: 184 VTHVV-MEVSSHALVQRRVAGVEFDVALFTNLSREHLDYHGDMESYFAAKKRLFEQH 239


>gi|329944588|ref|ZP_08292728.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328530141|gb|EGF57024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 528

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 139/457 (30%), Gaps = 40/457 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSIP 84
           + G+S+DS   AP E F  + G    G  F   AV  GA  V+ + D    A   +   P
Sbjct: 47  ILGVSVDSGDTAPGELFVGLPGFTAHGARFSDEAVGSGAVAVLTDADGALIAHEVAPGTP 106

Query: 85  VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   DD    +  L+              A+TG+ GKTTT   L   LS+        G+
Sbjct: 107 VLVHDDPRAVVGPLSAEVYHHPARGLVTTAVTGTNGKTTTSYFLDAILSAHVGGCMVAGT 166

Query: 143 YNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +G              V   +  + V+   G   L  S    +      V   +A 
Sbjct: 167 VELRVGERSVESPRTTVEAPVLQRMMALAVEDRVGAASLEASSHAIVLHRLDGVVVDVAG 226

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T +   HL     +E    AKA +F   E      +  DD +   L A++     +   
Sbjct: 227 FTNLQRDHLDFHKTMEGYLEAKARLFT-PEHARRGVICVDDQWGAALAAQAPIEVDRVRA 285

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G      +        ++ +           ++        +       L +V  + A
Sbjct: 286 YPGDVPADWWVSDAAVSLTDSATTFTLHGPDGEQIEASCPLPGLVNVQNAALALVMAIRA 345

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            V  A    ++       G+  R +   G   L    +   P +M  A+     + P   
Sbjct: 346 GVPAATATAALAGAHNIPGRMQRISQRDGRRGLCIVDFAHTPEAMDLALKA---VRPITP 402

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIH 423
           GR I V G               +   +       + ++  +  +     +++A+   I 
Sbjct: 403 GRLIVVFGSDG----DRDQGKRPMLGEVCARLADVLVVTDENPRSEDPRLIRNAILDGIR 458

Query: 424 VHY--SETMDG-------LFLFIQSSLVDGDVVVVKS 451
                 E ++                    D V+V  
Sbjct: 459 TVRPGLEDVEEVTTWRGDAVRRGVELCGPDDTVIVTG 495


>gi|284045226|ref|YP_003395566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
 gi|283949447|gb|ADB52191.1| UDP-N-acetylmuramyl-tripeptide synthetase [Conexibacter woesei DSM
           14684]
          Length = 491

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 86/462 (18%), Positives = 149/462 (32%), Gaps = 46/462 (9%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                     +  ++ D+R + P   FF + G   DGHDF   AV +GA  +VV   +  
Sbjct: 15  TLATPAGDVEIAALAYDNRKVQPGTLFFCVPGFTRDGHDFAPDAVARGAVALVVERPL-- 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
               L +P   V  V  A+ + A        A +  + +TG+ GKTTT  ++   L +  
Sbjct: 73  ---GLGVPELRVASVRAAMARAAANFNGDPTARLQTVGVTGTNGKTTTAFLVRGLLEAAG 129

Query: 135 KTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +    +G+    +G                    R  +D       + +S          
Sbjct: 130 RQTGLLGTVKAVVGGEAREVQRTTAEAIELQADLRAMLDGGDVAAAIEVSSHALELHRAD 189

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            VR   A+ T +   HL     +E+   AK  +FE     G   +N DD +   L  +  
Sbjct: 190 AVRFAAAIFTNLTQDHLDFHPTMEDYFLAKRRLFE--TGPGVAVVNVDDPYGRRLAEELR 247

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A G     +     +AD++  +       S    Q     + +     G    QN+L  +
Sbjct: 248 ADGAAL-VTIALDHDADYRATELTTGLTGSAFTAQTPQGPIALRTPLPGRFNVQNVLGAV 306

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V  L   ++    AL       GR +                 Y   P S+   +   
Sbjct: 307 AAVRALGVPLEQIAAALPQAGRVPGRFEPVDEGQGFAVLVD----YAHTPDSLDNVLQAA 362

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--------- 411
             +    E + + V G     G         L   ++       +++  +          
Sbjct: 363 RGL---TERQVLTVFG----CGGDRDRTKRPLMGGIAARLADEAYVTSDNPRSEDPEQIL 415

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +      HVH             ++  DGDV+V+  K 
Sbjct: 416 RDVVEGTGTGPHVHVEVDRRKAIFAAVAAAHDGDVLVIAGKG 457


>gi|322387431|ref|ZP_08061041.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
 gi|321141960|gb|EFX37455.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus infantis ATCC 700779]
          Length = 481

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 151/493 (30%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH          + I  DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDDLFREIIDQGHYHYNFNDVTFDSICYDSRKAKDNSLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+L A++ G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEFLLSAIEHGLSWYVAEQDY-----EVDIPVIVVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        L+                G     + +       +F++   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILNQKHYPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R    +     A +          +    ++        + +             
Sbjct: 174 AVDNGRTHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFY 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285
              LL   S A+ I +   +        + ++      QS  +++               
Sbjct: 228 HKRLLMKNSRAVVINSDMDYFSVLKEQVENQEHDFYGSQSDNQIENSKAFSFSATGKLVG 287

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + I      N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIATTRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         ++S +  H  G+   VLG     GE  +    D   +L  +    V
Sbjct: 348 AHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLDQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +   IH  V      +       S      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSFIHHPVEKIADREQAIKAAMSVTSQELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++IN + E++P
Sbjct: 459 CYQIINGIKEDYP 471


>gi|38234178|ref|NP_939945.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200440|emb|CAE50128.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           diphtheriae]
          Length = 513

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 78/484 (16%), Positives = 142/484 (29%), Gaps = 50/484 (10%)

Query: 6   TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   L +   G  +G        ++ I +DS  +     F A+ G    G  +       
Sbjct: 10  TLERLTELAGGRLVGETTAGATEISAIGLDSSQLPADAIFAALPGTKTHGAHYASQGKAA 69

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            A  V+ + +    +       P+  VDDV   L  L+           TII +TG+ GK
Sbjct: 70  AALAVLSDHEGTQILVDSGEKRPIIEVDDVRRVLGILSAEIYGHPSHEMTIIGVTGTSGK 129

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE- 166
           TTT  +L   L +       IG+    I              P            G+   
Sbjct: 130 TTTSYILERGLMAAGLHVGLIGTTGTRINGRKVPTKLTTPEAPTLQQLFSQMKAEGVSHV 189

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTI 223
            + +S            R   A  T ++  HL     ++E   A A              
Sbjct: 190 VMEVSSHALALGRVTGTRFSAAGFTNLSQDHLDFHPTMQEYFEAKALFFDPASPIHAEKS 249

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK--QCSEQSWMEVQLQGKSM 281
            +  +D + + +  ++ A  I        + +                    V    +S 
Sbjct: 250 VVCVNDLWGKNMAERAGADAITVCTEQEAAAHQADYWVSNIDVNPVGAQSFIVHHGAQST 309

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V     G     N ++ L +   +  D D  I+ ++        G+  R    Q F  +
Sbjct: 310 DVHLPLPGGFNIANTVVALALAESVGVDTDAFIRGIAD---VAVPGRMERIDRGQEFLAV 366

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++     ++     V+  +     GR   V+G     G    S    +    +    
Sbjct: 367 VDYAHKPAAVAV-----VIDTVRDQVPGRIAVVVGA----GGDRDSGKRPIMGAEAARRA 417

Query: 402 SHVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV 449
             V ++           +++A+    H       +                   GD V+V
Sbjct: 418 DLVIVTDDNPRSEDPAKIREAVLEGAHGVAGSADIREIGDRREAIRIAVQWAQPGDAVIV 477

Query: 450 --KS 451
             K 
Sbjct: 478 AGKG 481


>gi|256390855|ref|YP_003112419.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
 gi|256357081|gb|ACU70578.1| UDP-N-acetylmuramyl-tripeptide synthetase [Catenulispora acidiphila
           DSM 44928]
          Length = 532

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 89/460 (19%), Positives = 147/460 (31%), Gaps = 39/460 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V G+S DS+ I P + + A  G    G +F   AV  GA  VV +    A +  L++
Sbjct: 38  DTTVTGLSHDSQGIRPGDLYLAWPGAARHGAEFAPGAVASGAVAVVTDAAGAAMLDGLAV 97

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV   +DV G   +L+          +    +TG+ GKTTT  ++   L         IG
Sbjct: 98  PVLVAEDVRGLAGRLSAFVYGEPATRLAMYGVTGTNGKTTTSYLIDGGLRRAGLKTGVIG 157

Query: 142 SYNNHIG------------VPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
           +    IG             P   A +   V+  +  + M  S        T  +R   A
Sbjct: 158 TVQILIGDEVVPSVRTTPEAPDLQAILATAVEKDVDAIAMEVSSHALAYGRTAGIRFKAA 217

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               +   HL   +  E+   AKA++F     T    ++ DD     +  +  A G++  
Sbjct: 218 AFLNLTQDHLDFHADFEDYFEAKAKLFT-PGYTERAVVDVDDEHGRRVVERCRANGVQVH 276

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               K   AD+        ++ S   V              G     N+   L  + +L 
Sbjct: 277 TFSIKGAAADWTAEDIVLDADASTFTVAGPDGRRHKASA--GLPGDFNVANALAAIVLLA 334

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                   A++      G   R       G   L    Y   P ++  A+S L  ++  G
Sbjct: 335 VTGIDLETAIAGVADVHGVPGRMERIQVPGQQFLAVVDYAHTPDAVLTALSALRPVAERG 394

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------------A 413
            GR   V+G     G         L    ++        +  +                A
Sbjct: 395 RGRLRVVVG----CGGDRDKTKRPLMGAAAVRLADEAVFTDDNPRTESSADILAAVTAGA 450

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      +               ++   GDV++V  K 
Sbjct: 451 DAELAGAEKNYRVVADRAEAIRRAVAASGPGDVLIVAGKG 490


>gi|315604205|ref|ZP_07879271.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313911|gb|EFU61962.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 539

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 148/459 (32%), Gaps = 45/459 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNT--DMVASIGSLSIP 84
           V+G+++ S    P   F AI G    G  F   A++ GA L++ +      A    L +P
Sbjct: 58  VSGVTVSSNDCEPGWIFVAIPGLAQHGVRFAHAAIEAGACLILTDEVGRREAFERRLGVP 117

Query: 85  VFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V +    +  L           +  +A+TG+ GKTTT  ++  AL+S     +  G+
Sbjct: 118 VVQVSNPRAVVPLLCRNIYSSPATRVTTMAVTGTNGKTTTSYLMRAALASRFPHASLCGT 177

Query: 143 YNNHIGVPLTL----------------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +G                     A         + EL    L   R    +    +
Sbjct: 178 VETSVGPVSFEAVRTTAEAPVVARFLAATDQYHCGAAVIELSAHALSLNRVDGIV--FDV 235

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T +   HL  +  +E   +AKA +F   E +    +  DD +   L   +       
Sbjct: 236 AAFTNLQHDHLDYYGDMETYFAAKALLFT-PEHSRRGVVCVDDEWGRRLADHATVPVTTV 294

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                ++ +   +     +   ++   +                         + IVS +
Sbjct: 295 SALTHEAADWQVRNVTPDKSIGRTVFTLVSP-DGSPHRVAMPILGDVNVQNTAVAIVSAV 353

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +  V       SV +  +  G+  +     G   L+   Y   P +++  +    +++  
Sbjct: 354 SLGVSLEDAISSVENAPQIPGRMEKVNPTPGAQPLVIVDYAHTPEALEWTLRSTRELTA- 412

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------------- 413
             GR + V G     G+   S   +LA + +      +W++  +  +             
Sbjct: 413 --GRVVIVFGT---DGDRDASKREELAAIAARE-ADVLWVTDENPRSEDPQSIRDYLLRG 466

Query: 414 LKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKS 451
           +  A P    VH   T                D V++  
Sbjct: 467 IASARPDMHDVHEVTTCRRDAVRQAILDARAADTVIITG 505


>gi|21230195|ref|NP_636112.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66769815|ref|YP_244577.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|188993030|ref|YP_001905040.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. B100]
 gi|24212032|sp|Q8PCK4|MURE_XANCP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81304231|sp|Q4UQW6|MURE_XANC8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21111733|gb|AAM40036.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66575147|gb|AAY50557.1| UDP-N-acetylmuramoylalanyl-D- glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734790|emb|CAP53000.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. campestris]
          Length = 495

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 80/455 (17%), Positives = 140/455 (30%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++ P +AF AI G    G  F   A+  GA  ++      A +  +  
Sbjct: 19  DVQVSGLVMDSRAVRPGDAFVAIAGFGAHGLGFAAQALASGASAILFEPPAPADL-PVPA 77

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   L  LA            +I +TG+ GKT+T ++L  AL+ +      IG
Sbjct: 78  DAIAVPGLRARLGVLADHFHGAPSQAMRMIGVTGTNGKTSTVQLLAQALTLLGTPTGTIG 137

Query: 142 SYN---------NHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           +                P             D       + +S     +     V+  +A
Sbjct: 138 TLGVGLYGAAVPTGFTTPLVLQTHAELAQLRDAGAQAVAMEVSSHALDQGRVDAVQFDVA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     + +  +AKA++F          +N DD+F   L A          
Sbjct: 198 VFTNLTRDHLDYHGDMAQYGAAKAKLFAR-AGLRAAVVNLDDAFGRTLFAALDPALHAIG 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S      A  Q +  +         + +   +  V    +G     N+L   G +  L 
Sbjct: 257 VSSRAQAGATVQAQDLQLDHHGIQFTLHIGEAAHPVRSPLLGRFNVDNLLAVAGALHALD 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                  + L    P  GR    R     G   ++ +  +   A        L+ +  H 
Sbjct: 317 IAPAQIAEVLGRLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALTSLRSHA 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G    +        ++        ++  +            +    
Sbjct: 371 QDRLICVFG----CGGERDTGKRPQMAAIAEVTADVAIVTDDNPRGEDGDVIVADILRGF 426

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R                  S     D+V++  K 
Sbjct: 427 ARPDAAIVQRDRAAAIHQAISMAGADDIVLIAGKG 461


>gi|295102291|emb|CBK99836.1| UDP-N-acetylmuramyl-tripeptide synthetases [Faecalibacterium
           prausnitzii L2-6]
          Length = 492

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 137/472 (29%), Gaps = 45/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +    +  +  I  DSR  AP   F  I G   D HD+    V  G
Sbjct: 1   MKLEQLLEGVSYTLVQGSLELDIEDIIYDSRKAAPGRLFVCIVGTQRDSHDYAAQCVADG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
              +VV  D+  S       V  V+    AL  ++           T+I +TG+ GKTTT
Sbjct: 61  VTALVVQHDIDLSTVP-GAAVLKVESSRYALALMSGNLFGNPSRRMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L +             Y            P +       R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYFLGHHQETANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      +   I V T ++P H+      +     ++   +  ++  T  +N D
Sbjct: 180 VSSQGLMMDRVAGIHYDIGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCTTGVVNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E L        +    S      A                 V  +   M+V  +  
Sbjct: 239 DENTEALLEGHTCKLVTYGCSEKADYRAGTYQLLRTHDFLGVRFHVSGK-DDMDVKVNMP 297

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L  L +  +L    +    A+     +     R         FT++ +  + 
Sbjct: 298 GEFSVYNALAALTVGKVLGLPDE----AIHEGLGRCVVKGRVELVPISRKFTILLDYAHN 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             +      S+L+ +  +   R + V G     G             +         L+ 
Sbjct: 354 EVS----TESLLTTLRAYEPHRLVVVFG----CGGNRSKLRRYGMGEICARMADFSILTE 405

Query: 409 FHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +                +    P +  V           +      +GD++
Sbjct: 406 DNNRFEKVEDILADIRVGMNKGNPDAKFVEI-PDRLDALHYAVDHAQEGDLI 456


>gi|107099998|ref|ZP_01363916.1| hypothetical protein PaerPA_01001019 [Pseudomonas aeruginosa PACS2]
          Length = 485

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 13  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 72

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 73  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 132

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 133 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 193 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 251

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A    R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 252 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 310 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 362

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 363 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 418

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 419 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 453


>gi|152985436|ref|YP_001350325.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
 gi|150960594|gb|ABR82619.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa PA7]
          Length = 487

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVVNLDDDFGRRLAGEEQYSELITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A    R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|116052451|ref|YP_792763.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893508|ref|YP_002442377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|254238920|ref|ZP_04932243.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|296391126|ref|ZP_06880601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAb1]
 gi|313106947|ref|ZP_07793150.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
 gi|115587672|gb|ABJ13687.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170851|gb|EAZ56362.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa C3719]
 gi|218773736|emb|CAW29550.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas aeruginosa LESB58]
 gi|310879652|gb|EFQ38246.1| UDP-N-acetylmuramyl tripeptide synthase [Pseudomonas aeruginosa
           39016]
          Length = 487

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 76/455 (16%), Positives = 150/455 (32%), Gaps = 41/455 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR + P + F A+ G   DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSRGVRPGDLFLAVPGGRQDGRAHIADALAKGAAAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T ++  HL     +E  A+AKA++           +N DD F   L  +     + T 
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKL-FAWPGLRCRVINLDDDFGRRLAGEEQDSELITY 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                  +A    R+ +         +        +    +G     N+L  +G +  L 
Sbjct: 254 --SLTDSSAFLYCREARFGDAGIEAALVTPHGEGLLRSPLLGRFNLSNLLAAVGALLGLG 311

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   ++ L       GR    R         ++D ++  +         VL  + PH 
Sbjct: 312 YPLGDILRTLPQLQGPVGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEALRPHA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
             R + + G     G    +    L   ++      V ++  +            ++   
Sbjct: 365 AARLLCLFG----CGGDRDAGKRPLMAAIAERLADGVLVTDDNPRTEASAAIIADIRKGF 420

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  V +  +       + +S    DVV++  K 
Sbjct: 421 AAADKVTFLPSRGEAIAHLIASAAVDDVVLLAGKG 455


>gi|325923948|ref|ZP_08185538.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
 gi|325545574|gb|EGD16838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas gardneri ATCC 19865]
          Length = 491

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 75/455 (16%), Positives = 139/455 (30%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR++   +AF AI G    G  F+  A   GA  V+       +      
Sbjct: 15  DVQVSGLVMDSRAVRAGDAFVAIAGFGAHGLGFVEQARANGAAAVLFE-PPAPAELPAPA 73

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-- 139
               V  +   L  +A     +      ++ +TG+ GKT+T ++L  AL+ +        
Sbjct: 74  DAIAVPGLRARLGAMADQFHGQPSQALRMVGVTGTNGKTSTVQLLAQALTLLGMPTGTLG 133

Query: 140 -----------IGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIA 187
                         +   + +P       +  +      + +S     +     V   +A
Sbjct: 134 TLGVGLYGSAVPTGFTTPLVLPTHALLAQLRDEGAQAVAMEVSSHALDQGRVDAVHFDVA 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     + +  +AKA++F          +N DD F   L A          
Sbjct: 194 VFTNLTRDHLDYHGDMAQYGAAKAKLFTR-AGLKAAVVNLDDDFGRTLFAALDPALRAIG 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S      A  + +  +         + + G+   V    +G     N+L   G +  L 
Sbjct: 253 VSSRAQAQAIVRAQALQLDHNGINFALNIHGEVHPVHSPLLGRFNVDNLLAVAGALYALD 312

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                  + L    P  GR    R     G   ++ +  +   A        L+ +  H 
Sbjct: 313 IAPAQIAEVLGQLQPIHGR--MNRLGGAHGAPLVVVDYAHTPDA----LEQALASLRSHA 366

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           + R I V G     G    +        ++  N     ++  +            +    
Sbjct: 367 QDRLICVFG----CGGERDTGKRPQMAAIAEVNADVAIVTDDNPRGEDGDAIVADILRGF 422

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            R                  S     D+V++  K 
Sbjct: 423 ARPDAAIVQRDRAAAIHQAISMASASDIVLIAGKG 457


>gi|188575293|ref|YP_001912222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519745|gb|ACD57690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 495

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 147/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V+G+ +DSR++AP +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVAPGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
              GA  V+           + +    V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  RANGATAVLFE-PPAPDGLPVPVDAIAVLGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  AL+ +                      +   + +P       +  +    
Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVSTGFTTPLVLPTHALLAQLRDEGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGEMAQYGAAKAKLFTRPGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  ++   L    + S     +AD  +       + + +   L  +     
Sbjct: 235 NLDDGFGRTLFASRDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIQGEVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   D+  A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +        ++  N    
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                  +     D+V++  K 
Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|319946493|ref|ZP_08020729.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
 gi|319747324|gb|EFV99581.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus australis ATCC 700641]
          Length = 481

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 77/482 (15%), Positives = 148/482 (30%), Gaps = 44/482 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++LQ   G           N IS DSR +  +  FF +KG ++   +F+  A+++G 
Sbjct: 16  NFREILQ--DGEYHYSASGVSFNQISYDSRKVNAETLFF-VKGANFK-KEFLEQAIEQGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
              V   D       +SIP   V D+  A++ +A+        +  ++A TG+ GKTT+ 
Sbjct: 72  QWYVAEQDF-----EVSIPAIIVTDIKQAMSLIAMEFYGHPERQLKLLAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L    +            G     + +       +FE+    +   R    +  
Sbjct: 127 YYAYKILEQGHRPAMLSTMNTTLDGKTFFKSTLTTPESIDLFEMMAQAVANDRTHLIMEV 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A +          +  I ++        + +                LL   S A+ 
Sbjct: 187 SSQAYLVK------RVYGLIFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVV 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH------HGIGYHMAQNML 297
           + +          +   +       QS  +VQ        V       +        N  
Sbjct: 241 VNSDMDHFDILAEEVAEQDHDFYGSQSGNQVQNSKAFSFSVTGKLAGDYQTQLIGRFNQE 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +           +              G+        G    ID ++N +        
Sbjct: 301 NAVAAGLACLRLGASLEDIQKGIAKTRVPGRMEVLTQKNGAKVFIDYAHNGDS-----LK 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQ-------SFHIDLAEVLSLYNISHVWLSGFH 410
            +LS +  H  G    VLG     GE  +         H ++   L+  + ++       
Sbjct: 356 KLLSVVETHQTGTISLVLGSTGNKGESRRKDFGLLLEDHPEIQVFLTADDPNY-----ED 410

Query: 411 VLALKDALPRSI--HVHYSETMDGLFLFIQS-SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            LA+ + +   I   V      +       + +    D V++        Y+++N + EE
Sbjct: 411 PLAIAEEISSFITRPVEKIADREQAIQQAMATTSKPEDTVIIAG-KGADCYQIVNGVKEE 469

Query: 468 FP 469
           +P
Sbjct: 470 YP 471


>gi|86160184|ref|YP_466969.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776695|gb|ABC83532.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 504

 Score =  103 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 71/471 (15%), Positives = 139/471 (29%), Gaps = 59/471 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +       
Sbjct: 25  AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV--ECAPA 82

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133
            + +        AL   +   R   +  + A+TG+ GKTT   ++     +         
Sbjct: 83  RLLLAPSARRAMALAAASFCGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 142

Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                            P +          +       + E+  SH      +  + R  
Sbjct: 143 TISFRFPGAERPASHTTPESTAIQAVLAEMVEAGARDAVMEV-SSHALAQERVAGI-RFQ 200

Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T +   HL     +E   A+ +    E L   GT  +N  D +   L  +      
Sbjct: 201 AAGFTNLTRDHLDYHRDMEAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 258

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +G       +  + +     +    +    ++ +    +G H  +N+L   G+  
Sbjct: 259 PRVWRYGGRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 318

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L+  H   GR         +G    +D ++  +  +      +++ + 
Sbjct: 319 GLGLPPEAVARGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----SGFHVLALKDALP 419
                R + V G     G         L    +      +       +   +  + D LP
Sbjct: 371 GLSPRRLVCVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 426

Query: 420 RSIHV-----------------HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                                                   +GD V+V  K 
Sbjct: 427 GLDRAGKPAIGAARARAGEDGYVVEPDRRAAIALAVECAREGDAVLVAGKG 477


>gi|160944894|ref|ZP_02092121.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444078|gb|EDP21082.1| hypothetical protein FAEPRAM212_02410 [Faecalibacterium prausnitzii
           M21/2]
          Length = 492

 Score =  103 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 148/470 (31%), Gaps = 41/470 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++ +    +       +  I  DSR  AP   F  I G   D H F      KG
Sbjct: 1   MKLEQLMEGVPFTLVQGSLGTEIADIIYDSRKAAPGLLFVCIVGTQRDSHTFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              +V+  D+  S     + V  V+    A+  ++         + T+I +TG+ GKTTT
Sbjct: 61  VSALVIQHDIDLSTLP-GVTVVKVESSRYAMALMSANLFGNPARQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L +             Y      +     P +       R  +D       + 
Sbjct: 120 THMIKSVLEAAGRKVGMIGTNGIYYMGRHKDTANTTPESYELQKTFREFLDAGCDTALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   + V T ++P H+      +     ++   +  ++     +N D
Sbjct: 180 VSSQGLMMDRVAGVHYDVGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFKRCDVGVVNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L           + ++G+ + AD++   +K      ++ V       + +   +
Sbjct: 239 DENTAALLE----GHTCKLVTYGRDEKADYRETGYKLLRTHDFLGVAFHVTGKDEMDVKV 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++   L     +   +     A+     K     R         FT++ + Y  
Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHDGLGKCVVKGRVELVPISKKFTILLD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           N  S ++ ++ L    PH     + V G     G  S+     + E+ +      +    
Sbjct: 353 NEVSTESLLTTLRAYKPHR---LVVVFG---CGGNRSKLRRYGMGEICAKMADFSILTED 406

Query: 407 ------SGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447
                     +  +++ + +                  +      +GD++
Sbjct: 407 NNRFEKVEDIIADIREGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456


>gi|218458612|ref|ZP_03498703.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli Kim 5]
          Length = 81

 Score =  103 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/79 (49%), Positives = 54/79 (68%), Gaps = 1/79 (1%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
          M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+P EAFFAIKG   DGHD+   A
Sbjct: 1  MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPGEAFFAIKGDRVDGHDYASMA 59

Query: 61 VQKGAGLVVVNTDMVASIG 79
          +  GA L+VV+   + ++G
Sbjct: 60 MANGASLLVVSEARLPAMG 78


>gi|157149815|ref|YP_001450915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gordonii str. Challis substr. CH1]
 gi|157074609|gb|ABV09292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gordonii str. Challis substr. CH1]
          Length = 481

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 83/503 (16%), Positives = 160/503 (31%), Gaps = 66/503 (13%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH          + IS DSR++     FF +KG ++ 
Sbjct: 1   MIKIETIIDILKKDHNFREIIKDGHYFFHDGGLTFDKISYDSRNVTNTTLFF-VKGENFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+  AV+ G    +  +D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEFLEGAVESGLKFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           +A TG+ GKTT+       LS   +            G     + +       +FE+   
Sbjct: 114 LAFTGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFEMMAQ 173

Query: 170 -------------SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
                        S    ++   + +    +V   I+P H+        E+    K  + 
Sbjct: 174 AVANDRTHLIMEVSSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRLLM 233

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E       + +N     F+++K +  ++          +   D Q   ++   + +    
Sbjct: 234 ENSR---AVIVNSGMDHFQIVKEQVSSIEHDFYGENSSNTIIDSQAFSFEASGKLAGKYD 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                                    L           +              G+      
Sbjct: 291 IQLIGRFNQE-------------NALAAGLACLRLGASLTDIQKGIALTRVPGRMEVLTQ 337

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G    +D ++N +         +LS +  H +G+ I VLG     GE  +    D   
Sbjct: 338 KNGAKVFVDYAHNGDS-----LTKLLSVVQEHQKGQTILVLGATGNKGESRRK---DFGI 389

Query: 395 VLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDV 446
           +L+ +    V L+           +   +    S  V              S    +GD 
Sbjct: 390 LLNKHPEIQVILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEGDA 449

Query: 447 VVVKSSNSCGFYRLINLLLEEFP 469
           V++        Y+++N + E +P
Sbjct: 450 VILAG-KGADAYQIVNGIKEAYP 471


>gi|293610702|ref|ZP_06693002.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
 gi|292827046|gb|EFF85411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 [Acinetobacter sp. SH024]
          Length = 499

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/462 (17%), Positives = 145/462 (31%), Gaps = 57/462 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              G S+DSR +A  + F A+    +        F   A+  GA  ++  T++  +    
Sbjct: 21  PFQGFSLDSRKVASGQIFIALTSYSQPEKT--RAFAESALANGALAIISETELGVANE-- 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               +   DV   + +                IIA+TG+ GKTT   ++   L S ++  
Sbjct: 77  ----WVRSDVRQRMGEWQERYLQHIDPVVPVRIIAVTGTNGKTTISRLV-AELISSQQQR 131

Query: 138 ACIGSYNNHIGVPLTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTHLV 182
             +     +  +P                    D+         L  S  G  +   +  
Sbjct: 132 CAVMGTTGNGILPDLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGC 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV + ++  HL     +E  A AKA +F        +    D+    ++ A     
Sbjct: 192 AIEIAVYSNLSRDHLDYHGTLEAYAEAKALLFRFSSLKVAVINLDDEHAALMINAAKQNP 251

Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               I ++  ++N  D+ +         +   +     S  V    +G+   +N++  L 
Sbjct: 252 AQPKILTYSLTQNTADYYITDLSYSLAGATFNLVSPQGSFAVQSPLLGHFNVENLVAALI 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                       +KAL  F P+          +  G    + +  +   A     I VL 
Sbjct: 312 ATEQAGF----NLKALVAFVPELIGAPGRMQVIRDGERLFVVDYAHTPDA----LIQVLK 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            +  H   +  AV G     G         L    +L   + V L+  +           
Sbjct: 364 TLKRHVSNQLWAVFG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFA 419

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +K  +      +H          F+      GD+VV+  K 
Sbjct: 420 DMKQGIDFSGHRMHEIHDRREAIKFVAQQAQAGDIVVIAGKG 461


>gi|186477426|ref|YP_001858896.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phymatum STM815]
 gi|184193885|gb|ACC71850.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia phymatum
           STM815]
          Length = 512

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/491 (16%), Positives = 160/491 (32%), Gaps = 55/491 (11%)

Query: 1   MNPLWTFH----DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD- 55
           M+ L + H     + +A+        P      +  DSR IAP + F A      DG D 
Sbjct: 1   MSALRSSHPAQQQIAEALAWLRAHAQPGA---HLHADSRKIAPGDVFLAYA---VDGADN 54

Query: 56  --FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATII 111
             FI  A+++GA  V+V  D  A     ++ +  V  +      +A A          +I
Sbjct: 55  RPFIASAIERGAAAVLVQADGFAGDIDPAL-MVAVPRLNELTGTIASAWYGDPSDAMRVI 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------- 163
            +TG+ GKT+    ++ AL+++ +  A IG+  +  G+P  L                  
Sbjct: 114 GVTGTNGKTSCTNWISAALTALGQPCAIIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLE 171

Query: 164 --------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                      + +S     +   +     + V T +   HL           A      
Sbjct: 172 QLRAAGAKAVAMEVSSHALHQGRVNGTAFSVGVFTNLTQDHLDYHGTF-AAYEAAKARLF 230

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD----FQLRKWKQCSEQSW 271
              +     +N DD     + A ++       YS     +            +  +  + 
Sbjct: 231 SWPELKAAVINADDEAGRRMIASTNGHAKTIAYSLQPRADVQADASIVASNVRATTTGTA 290

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +     + ++  + +G     N+L  LG +       D A+  ++      GR +R  
Sbjct: 291 FHIASDWGNSDIEVNTLGAFNVSNLLGVLGALLASDVPFDAAVAQIAKLESVNGRMERLG 350

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             +      ++ + Y   P +++  ++ L  I+    G+ I + G     G    +    
Sbjct: 351 GRVQNDEPLVVID-YAHTPDALEQTLTALRPIADARGGKLICMFG----CGGDRDATKRP 405

Query: 392 LAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           L   ++      V ++  +  +         +   +  +      E      L       
Sbjct: 406 LMGEIAERCADGVVVTSDNPRSEDPHKIIDQIAAGMKDASKARRIEDRASAILQAVRCAA 465

Query: 443 DGDVVVV--KS 451
             DVVV+  K 
Sbjct: 466 REDVVVLAGKG 476


>gi|124265650|ref|YP_001019654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
 gi|124258425|gb|ABM93419.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylibium petroleiphilum PM1]
          Length = 503

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/453 (17%), Positives = 147/453 (32%), Gaps = 38/453 (8%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSR +   +AF A  G   DG  F+  A+  GA   +V  + V + G     +  +  +
Sbjct: 25  TDSRLVQRGDAFIAWPGHATDGRRFVKAALAAGAATCLVEAEGVDAHGFDDARIGALPGL 84

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--------- 140
             A   +A A   +      ++A TG+ GKT+T      ALS + +    +         
Sbjct: 85  KAATGAIADAYFGQPSQQLRVVATTGTNGKTSTAWWTAQALSLLGRRCGVVGTLGIGEPP 144

Query: 141 ----GSYNNHIGVPLTLA-------RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                ++ +  G+            R   D  F    +  S +G +      +R  +A+ 
Sbjct: 145 LPGRETHIDFTGLTTPDPVTLHGGLRRMADAGFEACAIEASSIGIVEHRLAALRIEVALF 204

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T     HL     ++   +AK  +  G        +N DD+    L         +    
Sbjct: 205 TNFTRDHLDYHGSMDAYWAAK-RVLFGWPGLKAAAVNLDDAQGAELARSLAGHVPELWTY 263

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +  +   + R            +   G ++ V    IG + A N+L  +G +  L   
Sbjct: 264 SLERDDVRLRARDLGYVDGGLAFTLYEGGTALPVRSRLIGDYNAANLLAVIGGLRALGVP 323

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +  A++ +    P  GR ++            +   Y   P +++ A+  L  ++    G
Sbjct: 324 LADAVRVVPQLTPVPGRMQKVDGDAGVAPQPEVVVDYAHTPDALEKALGALRPLAAARGG 383

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---------PR 420
           R + V G     G    +    L   ++      V  +  +      A            
Sbjct: 384 RLLCVFG----CGGNRDASKRPLMAAVAERLADRVIATSDNPRDEAPAAILVDVAAGFAA 439

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              V   E           S    DV+++  K 
Sbjct: 440 PAAVEMIEDRRAAIARAIGSAEARDVLLIAGKG 472


>gi|197124211|ref|YP_002136162.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
 gi|196174060|gb|ACG75033.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter sp. K]
          Length = 496

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 72/471 (15%), Positives = 138/471 (29%), Gaps = 59/471 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +       
Sbjct: 17  AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAVAVVAERPV--ECAPA 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133
            + +        AL   +   R   +  + A+TG+ GKTT   ++     +         
Sbjct: 75  RLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 134

Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                            P +          +       + E+  SH      +  + R  
Sbjct: 135 TISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEV-SSHALAQERVAGI-RFQ 192

Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T +   HL     ++   A+ +    E L   GT  +N  D +   L  +      
Sbjct: 193 AAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +G       +  + +     +    +    ++ +    +G H  +N+L   G+  
Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGALAIRSPLVGQHNLENLLCAAGLAL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    D  ++ L+  H   GR         +G    +D ++  +  +      +++ + 
Sbjct: 311 GLGLPPDAVVRGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------------------ 406
                R I V G     G         L    +      +                    
Sbjct: 363 GLSPRRLICVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 418

Query: 407 ----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +G   L    A                         +GD V+V  K 
Sbjct: 419 GLDRAGKPALGAARARTGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469


>gi|50086343|ref|YP_047853.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
 gi|49532319|emb|CAG70031.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Acinetobacter sp. ADP1]
          Length = 499

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 68/484 (14%), Positives = 155/484 (32%), Gaps = 59/484 (12%)

Query: 4   LWTFH-DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFIL 58
           + +   +++ AI              G  +DSR I   + F A+    +        F  
Sbjct: 1   MMSVSFEMISAIDAAI--EWRDQPFQGFCLDSRYIQKDQLFIALTSYSQPEKT--RIFAE 56

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAIT 114
            A+ +GA  ++    +           +   DV   + +       +++      IIA+T
Sbjct: 57  TALAQGALGIISEQPLGLERE------WVCADVRHRMGQWQKNYLQKTEPVNAARIIAVT 110

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---------RMPVDVDFGIF 165
           G+ GKTT   ++   L ++++    +     +  +P             ++   +   + 
Sbjct: 111 GTNGKTTISRLVAELL-TLQQQRCAVMGTTGNGILPHLNPSTHTTLDALQLQSALHQYVK 169

Query: 166 E------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           E      L  S  G  +   +     IAV + ++  HL     +   A AK+ +F     
Sbjct: 170 EGARFASLEASSHGLEQGRLNGCDIEIAVYSNLSRDHLDYHGTLAAYAEAKSRLFAFKSL 229

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +    D     +    +       I ++  +++AD+ +++ +     +   +     
Sbjct: 230 KVAVINQDDAYAELMKAVAAQNPAQPQILTYSLTQSADYSVKELQYSLSGARFILVGPKG 289

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G+   +N++  L         ++  +          G   R +   +Q   
Sbjct: 290 EYLVESPLLGHFNVENLIAALIAAEQAGFALEELV---KTVPQLIGAPGRMQVIRDQDRL 346

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++  +         VL  +  H + +  AV G     G         L    +L 
Sbjct: 347 FVVDYAHTPDA-----LNQVLKTLRRHVQQQLWAVFG----CGGDRDRGKRPLMTQAALN 397

Query: 400 NISHVWLSG-----FHVLALKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVVV 449
             + V L+       +   +   +   I   +              ++      GD+VV+
Sbjct: 398 GANPVILTSDNPRTENPKQIFADMKTGIDFSHHQIYEIHDRREAIKYVVQHAQAGDIVVI 457

Query: 450 --KS 451
             K 
Sbjct: 458 AGKG 461


>gi|330888579|gb|EGH21240.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 315

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 91/261 (34%), Gaps = 18/261 (6%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++ SR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLASRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVR 183
             +G+        L   R        +                + +S  G  +     + 
Sbjct: 131 GIVGTLGTGFYGALQSGRHTTPDPIAVQATLTDLKKAGARAVAMEVSSHGLDQGRATALA 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + V+T ++  HL     +E    A AK   +  L+       +        +K +S  
Sbjct: 191 FDVGVLTNLSRDHLDYHGTMEAYAAAKAKLFAWSNLKCRVINLDDAFGRELAGIKQESRL 250

Query: 242 LGIKTIYSFGKSKNADFQLRK 262
           +    + S       D +   
Sbjct: 251 ITYSQLDSSAYLYCRDAKFDD 271


>gi|220918991|ref|YP_002494295.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956845|gb|ACL67229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 496

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 71/471 (15%), Positives = 137/471 (29%), Gaps = 59/471 (12%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                +  ++ DSR + P   FFA+ G  +DGH F   A ++GA  VV    +       
Sbjct: 17  AGDPEITRVTGDSREVIPGAVFFALPGVQHDGHAFAAEAARRGAIAVVAERPV--ECAPA 74

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-------- 133
            + +        AL   +   R   +  + A+TG+ GKTT   ++     +         
Sbjct: 75  RLLLAPSARRAMALAAASFHGRPAERLRMAAVTGTNGKTTVTYLVEACARAAAVPVGVLG 134

Query: 134 -KKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                            P +          +       + E+  SH      +  + R  
Sbjct: 135 TISFRFPGADRPASHTTPESTAIQAVLAEMVAAGARDAVMEV-SSHALAQERVAGI-RFQ 192

Query: 186 IAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            A  T +   HL     ++   A+ +    E L   GT  +N  D +   L  +      
Sbjct: 193 AAGFTNLTRDHLDYHRDMDAYFAAKRRLFTEHLAPGGTAVINARDPWGARLADQL--GPG 250

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             ++ +G       +  + +     +    +    ++ +    +G H  +N+L   G+  
Sbjct: 251 PRVWRYGVRAGDALRALEVRTGLAGTSATFETPAGAIAIRSPLVGQHNLENLLCAAGLAL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   + L+  H   GR         +G    +D ++  +  +      +++ + 
Sbjct: 311 GLGLPPEAVARGLAASHGAPGR---LERIDGRGLSVFVDYAHTDDALA-----RMIAALR 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------------------ 406
                R I V G     G         L    +      +                    
Sbjct: 363 GLSPRRLICVFG----CGGDRDRGKRPLMGAAAAAADLAIVTSDNPRTEDPLAIIADVLP 418

Query: 407 ----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +G   L    A                         +GD V+V  K 
Sbjct: 419 GLDRAGKPSLGAARARAGEDGYLVEPDRRAAIALAVECAREGDAVLVAGKG 469


>gi|302546145|ref|ZP_07298487.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302463763|gb|EFL26856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces himastatinicus ATCC 53653]
          Length = 538

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 91/484 (18%), Positives = 152/484 (31%), Gaps = 54/484 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G+  +  V GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 17  LAELADQLGVDASGVPAEAAVTGITHDSRAVRPGDVYAALSGARLHGADFAAQAADLGAA 76

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ + D      +  +PV  VD+  G +  LA         ++  I ITG+ GKTTT  
Sbjct: 77  AVLTDPDGAERAAATGLPVLVVDNPRGRMGALAATIYDEPGHSLLQIGITGTSGKTTTAY 136

Query: 125 ML-----TIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFG 163
           ++       A  +       IG+    IG     +                    DV   
Sbjct: 137 LVDGGLRAAAEKAAGGPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERDVHSV 196

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH   +  +   V   +AV   ++P H+   SG+E+   AKA++F        +
Sbjct: 197 VMEV-SSHALVLGRVDGCV-FDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTKARSRAGV 254

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D+    L++          + +F    + D   R                G + E 
Sbjct: 255 INYDDEYGRRLIEE-----SEVPVTTFSAEGHPDAHWRAADVEVGPLGSTFTAIGPNGET 309

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V          N+   L  +  L         A        G   R         +  + 
Sbjct: 310 VRAAAPIAGPFNVANALAALVALAVAGIDPQTAADGIGAVPGVPGRLERVDVGQPYLAVV 369

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +       A  SVL  +    +G+  AVLG     G                     
Sbjct: 370 DYAH----KTDAVESVLRALRKVTDGKLHAVLG----CGGDRDRLKRGPMGSAVARYADT 421

Query: 404 VWLSGFHVL-----ALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L+  +       A+  A+              V   E  +       +    GD V+V
Sbjct: 422 AVLTSDNPRSEDPLAILAAMLAGAAEVPSHERGDVLVEEDRENAIAAAVARAEPGDTVIV 481

Query: 450 --KS 451
             K 
Sbjct: 482 AGKG 485


>gi|41408000|ref|NP_960836.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|81414074|sp|Q73YQ3|MURE_MYCPA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|41396354|gb|AAS04219.1| MurE [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 520

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 143/480 (29%), Gaps = 53/480 (11%)

Query: 10  LLQAIQGHSIGIV-----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           L   +     G       P   V G+++ ++ + P + F A+ G    G      A+++G
Sbjct: 21  LADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERG 80

Query: 65  AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           A  V+ +   VA + G  + P          L +LA A         T+I ITG+ GKTT
Sbjct: 81  AVAVLTDAAGVAQLTGGRTTPTLLHPRPRSVLGQLAAAVYAHPSERLTVIGITGTSGKTT 140

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165
           T  ++   L +  +T   IG+    I                   L  A     VD  + 
Sbjct: 141 TTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVM 200

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   +  +    R  +   T ++  HL     + +   AKA +F+          
Sbjct: 201 EV-SSHALALGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRA 258

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       +  A       +                       +  +   +     
Sbjct: 259 VVCIDDE---AGREMAARAGDAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHR 315

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            GI      N+   L  +++L A   +  +A          G+       Q F  L+D +
Sbjct: 316 AGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRVPGRMEEIDAGQDFLALVDYA 375

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +         A+  +       + R   V G     GE        +    +      V 
Sbjct: 376 HKPG------ALRAVLSSLKRPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVV 425

Query: 406 LS-----GFHVLALKDAL-----PRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     G    A++  +              E            +    GDVV+V  K 
Sbjct: 426 VTDDNPRGEDPAAIRREILAGVTESGCAAEVVEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485


>gi|52841152|ref|YP_094951.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|54296937|ref|YP_123306.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
 gi|52628263|gb|AAU27004.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|53750722|emb|CAH12129.1| hypothetical protein lpp0978 [Legionella pneumophila str. Paris]
          Length = 483

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 73/457 (15%), Positives = 145/457 (31%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  GIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN---------HIGVPL--TLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPH 185
           IG+                P    L R+      G  +   + +S     +     +   
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEGGIKQVCMEVSSHALSQHRVDSLEFS 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     ++  A   A+            +   D  F+ L +      + 
Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERAELQWAIINQDDDFQDLMSNVLKTHV- 253

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  +N D +  +W      + +EV+       +    +G     N L     +  
Sbjct: 254 KKVTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSLLA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + +  ++ ++      GR       + Q  + L+D ++  +        +VL  +  
Sbjct: 314 SGYNPEKVVQVMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
             +GR   V G     G         +    +     ++ ++  +            +  
Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +P S  V      +    +        D++++  K 
Sbjct: 421 GIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|219849915|ref|YP_002464348.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
 gi|219544174|gb|ACL25912.1| UDP-N-acetylmuramyl-tripeptide synthetase [Chloroflexus aggregans
           DSM 9485]
          Length = 510

 Score =  102 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 154/428 (35%), Gaps = 32/428 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  DLL  +  + +   P   ++ +  DSR + P   F AI+G H DGH+FI  A+  GA
Sbjct: 4   TLADLLSGVSVYHLIGDPATPISALVYDSRRVTPGSLFVAIRGQHSDGHNFIPQAIAAGA 63

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             VVV+        S  +PV  V D   AL  LA A       + T I ITG+ GK+TT 
Sbjct: 64  AAVVVDQRYWHGAVSAEVPVVVVADSRVALAPLAAAFYEYPGQQLTTIGITGTKGKSTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPV---------------DVDFGIF 165
           ++    L++  +T   I + +  IG    P    +                    D  + 
Sbjct: 124 DLTAQLLAAAGRTVGMISTVDFQIGTRRWPNDTRQSTPEAPEVQALLREMVVAGCDTAVI 183

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     L             +AV+  I   HL      E+  + KA++F  L +      
Sbjct: 184 EATSHALSPRWGRLVGCAFAVAVMLNIGHEHLDFHGTFEQYRADKAQLFALLAERHGPTW 243

Query: 226 NYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              ++          A+  +T+   +     AD Q +        S M +      +EV 
Sbjct: 244 AIVNADDPHHGTFLAAVPSQTMRLRYALHAPADVQGQIVHSGPASSHMRIHSPWGEIEVN 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G   A N+L  L +       ++ A  A++      GR       + Q F  ++D 
Sbjct: 304 VPLPGRFNASNVLAALTVALTQGVPLERAAAAVAHVRAPRGRMVS--INVGQPFTVIVDY 361

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         + + + P   GR IAV G   E           +   ++      +
Sbjct: 362 AHNPDSFE-----QIFTMLRPQVTGRIIAVFGSAGE----RDVSKRAIQGEIAGRMCDLL 412

Query: 405 WLSGFHVL 412
            L+     
Sbjct: 413 VLTDEDPR 420


>gi|256788292|ref|ZP_05526723.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces lividans TK24]
 gi|289772186|ref|ZP_06531564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
 gi|289702385|gb|EFD69814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces lividans TK24]
          Length = 497

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            + GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 8   LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +P   VDD    + +LA             I ITG+ GKTTT  
Sbjct: 66  AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L + K T              +   R   +                    + +S 
Sbjct: 126 LVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSS 185

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          IAV T ++P H+   SG+E+   AKA++F   +++    +N DD +
Sbjct: 186 HALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEY 244

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  ++    +    ++    + D   R  +           + G   E +       
Sbjct: 245 GRRLAKEATVPVV----TYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 300

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L A       A        G   R         F  + +  +    
Sbjct: 301 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVDEGQPFFAVVDYAH---- 356

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
              A  SVL  +    EG+  AVLG     G    +   +              L+  + 
Sbjct: 357 KTDAVESVLRALRKVTEGKLHAVLG----CGGDRDTTKREPMGAAVARFADTAVLTSDNP 412

Query: 412 LA---------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +              V   E          +    GD V+V  K 
Sbjct: 413 RSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 468


>gi|312795056|ref|YP_004027978.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Burkholderia rhizoxinica HKI 454]
 gi|312166831|emb|CBW73834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (EC 6.3.2.13) [Burkholderia rhizoxinica HKI 454]
          Length = 510

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 86/475 (18%), Positives = 154/475 (32%), Gaps = 47/475 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            ++L  ++              + +DSR++   +AF A      D   +I  A+Q+GA  
Sbjct: 16  AEVLAWLRARLAPHAQ------LRVDSRAVCAGDAFVAYAVDSADSRAYIADALQRGAAA 69

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
           V+V        G    PV  V ++      +A A          ++ ITG+ GKTTT   
Sbjct: 70  VLVQAGGEFPGGG---PVLQVPELDQLAGHIASAWYGEPSRDMLMVGITGTNGKTTTSHW 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IFE--------------LGM 169
           +  ALS      A IG+     G+P  L+           +                + +
Sbjct: 127 VAGALSGSGTRCAIIGTLGT--GLPGQLSPTGFTTPDAPQVHHSLAALRAHGASAVSMEV 184

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI--EEIASAKAEIFEGLEKTGTIFLNY 227
           S     +   + V   IAV T +   HL     +   E A A+   + GL        + 
Sbjct: 185 SSHALHQGRVNGVAFDIAVFTNLTQDHLDYHKDLASYEAAKARLFDWPGLRAAVINRDDE 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                    A         I S     +A       +  +  +   V       E+    
Sbjct: 245 AGRRLIGHLATRVRTISYGIASTRPRGDASLHAMAIRATATGTAFTVVSDWGHAELEVGT 304

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+L  LG++       D A+  ++   P  GR ++           ++ + Y 
Sbjct: 305 LGLFNVANLLAVLGVLLAADVPFDAALSQITRLEPVNGRMQQLGGRPQVDEPLVVVD-YA 363

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++  +  L  I+    G+ + V G     G    +    L   ++      V ++
Sbjct: 364 HTPDALEKTLDALRPIATQRGGKLVCVFG----CGGERDATKRPLMGAIAERLADSVIVT 419

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +         +  A+     V   E   G  L         DVV++  K 
Sbjct: 420 SDNPRSEPPLAIIGQIVSAMREPARVRTIEDRAGAILQAVRGASAADVVLIAGKG 474


>gi|257068259|ref|YP_003154514.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
 gi|256559077|gb|ACU84924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Brachybacterium faecium
           DSM 4810]
          Length = 525

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 140/481 (29%), Gaps = 52/481 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T  +L +A+            + G+S+DSRS+ P + + A+ G    G +F   A  +GA
Sbjct: 21  TAAELARALGA--AAPEEDLALRGVSLDSRSVEPGDLWCALPGATAHGAEFAAQAAGRGA 78

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            + + +        +  +P   VDD     AL    V  R   +   I +TG+ GKT+  
Sbjct: 79  AMALTDPAGRERCEAAGLPALVVDDPRSATALAAALVHGRPAERLATIGVTGTNGKTSVT 138

Query: 124 EML-----------------TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             +                   +  +   +   I +       P     +    + G+  
Sbjct: 139 TAITRALLELGVPAGAIGTSGTSYRAADGSDHAIATVRTTPEAPELHGLLARMAEDGVEV 198

Query: 167 LGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + M   SH   +     +V   +   T +   HL     +E    AK  +F         
Sbjct: 199 VSMEVSSHALVLHRADEVV-YDVVCFTNLTQDHLDFHGTMEAYYEAKRTLFT-PAHARRG 256

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD +   L  ++           G   +   +  +         ++     +++  
Sbjct: 257 VVCVDDDWGRRLAREAQIPVTTYATRPGIDADHRAREHRADGYGSIVEVDGPDGTRTLHA 316

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              G  Y         L      T +        +   P       +        ++   
Sbjct: 317 ALPGRHYVANTLAADLLLAAIGRTGEDVVQALGEAGTVPGRMEPVAHTPIRGVVDYSHTP 376

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++             +L+  +  G GR + V+G     G         L   ++      
Sbjct: 377 DALEQA---------LLTLRAVPGTGRLLVVMGA----GGDRDRAKRPLMGEVAARYADV 423

Query: 404 VWLSG-----FHVLALKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           V ++          A++  +   I       VH  +                D ++V  K
Sbjct: 424 VLVTDDNPRTEDPAAIRAEVLSGIPEGTKAQVHDVDGRGEAIALAAYLADVSDTILVAGK 483

Query: 451 S 451
            
Sbjct: 484 G 484


>gi|237747021|ref|ZP_04577501.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
 gi|229378372|gb|EEO28463.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes HOxBLS]
          Length = 504

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 134/451 (29%), Gaps = 40/451 (8%)

Query: 33  DSRSIAP--QEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           DSR I       FFA +G   DG D+I  A+  GA  VV   +        ++P  GV  
Sbjct: 27  DSREIGADGNAVFFAYEGDSADGRDYISKAIGNGAKAVVFEKEGFDWNPEWNVPHLGVMG 86

Query: 91  VLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG------S 142
           +      +A A          +IA+TG+ GKT+  + L  +LS++ K  A IG       
Sbjct: 87  LKACAASVAAAYYDYPAQAMFVIAVTGTNGKTSCTQWLGQSLSALGKKTAVIGTLGVTVF 146

Query: 143 YNNHIGVPLTLARMPVDVDFG-------------IFELGMSHLGEIRFLTHLVRPHIAVI 189
            N   GVP        D                    +  S +G  +   + +   + + 
Sbjct: 147 VNGQGGVPEETGYTTPDQVQLQRILAKLRKESVQCVAMEASSIGIDQGRLNGIPIDVGLF 206

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T     HL     +     A               LN DD     L          T Y+
Sbjct: 207 TNFTRDHLDYHHDM-ASYKAAKRKLFDWPGLKHAVLNLDDPMGRELATALKTRISLTGYT 265

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              +  A   L+        S +E  +   S              N    LG++ +L A 
Sbjct: 266 LENADTAIPVLKACDIRHRTSGIEFSIDSFSGSARIRT-RLIGRFNASNVLGVLGVLLAA 324

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 A+           R +    +    ++ + +   P +M+  ++ L  ++    G
Sbjct: 325 GIHWDDAVRTLGDLLPPAGRMQQMGGKNAPLVVID-FAHTPDAMEKGLATLRHVANERNG 383

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHV 424
           +   V G     G             +S      V ++           +   +   +  
Sbjct: 384 KLWCVFG----CGGDRDQGKRPQMGSVSET-ADFVIVTSDNPRSEDPKEIMKQIISGMEK 438

Query: 425 H--YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                E      L         DV+ +  K 
Sbjct: 439 EPQVYEDRAMAILQAVRQASQNDVIFLAGKG 469


>gi|257438093|ref|ZP_05613848.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257199424|gb|EEU97708.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 492

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 79/471 (16%), Positives = 149/471 (31%), Gaps = 43/471 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       V  I  DSR  AP  AF  I G   D H+F      KG
Sbjct: 1   MKLEQLLEGVPFTLVQGSLDTEVQDIIYDSRKAAPGLAFVCIVGTQRDSHEFAADCAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
             ++V+  D+  S     + V  V+    A+  ++           T+I +TG+ GKTTT
Sbjct: 61  VSVLVIQHDIDLSAMP-GVTVVKVESSRYAMALMSGNLFGNPSRQMTMIGVTGTKGKTTT 119

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLTL-----ARMPVDVDFGIFELG 168
             M+   L +             Y            P +       R  +D    +  + 
Sbjct: 120 THMIKSVLEAAGKKVGMIGTNGIYFMGCHQETANTTPESYELQKTFRQFLDAGCDVALME 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   I V T ++P H+      +     ++   +   +     +N D
Sbjct: 180 VSSQGLMMDRVAGVHYDIGVFTNLSPDHIGP-GEHKTFEEYRSWKGQLFRRCDVGVVNID 238

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E L           + ++G+S+ AD++    +      ++ V       + +   +
Sbjct: 239 DENTEALLE----GHTCKLVTYGRSEKADYRAEGCELLRTHDFLGVAFHVSGRDNMDVRV 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++   L     +   +     A+     K     R         FT++ + Y  
Sbjct: 295 NMPGEFSVYNAL-AALAVGKVLGLPDAAIHEGLGKCVVKGRVELVPISKKFTILLD-YAH 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S ++ ++ L    PH     + V G     G  S+     + E  +        L+ 
Sbjct: 353 NEVSTESLLTTLRAYHPHR---LVVVFG---CGGNRSKLRRYGMGETCAKMA-DFSILTE 405

Query: 409 FH--VLALKDALPR----------SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +     ++D L                           +      +GD++
Sbjct: 406 DNNRFEKIEDILADIRVGMNKGNPDAKFVEIPDRLDALHYAVDHAQEGDLI 456


>gi|317489847|ref|ZP_07948342.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
 gi|316911052|gb|EFV32666.1| Mur ligase family protein [Eggerthella sp. 1_3_56FAA]
          Length = 173

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 71/132 (53%), Gaps = 6/132 (4%)

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           FT+++++YNANP SM+A+++    +     G+ +AVLGDM E+G  + + H  + E  + 
Sbjct: 44  FTVVNDAYNANPDSMRASLATFCALDV--PGKHVAVLGDMGELGSYAPACHAGIGEFAAT 101

Query: 399 YNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             +  +   G   L + DA  R+      +  + ++  +F  + + +  GD V+VK+S+ 
Sbjct: 102 LPLDRLVCVGELSLHIADAAERAGMDPQRIVRAGSLSEVFGDLDACVEPGDAVLVKASHF 161

Query: 455 CGFYRLINLLLE 466
            G  R++  L+ 
Sbjct: 162 MGLTRVVEGLVN 173


>gi|182682486|ref|YP_001830646.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M23]
 gi|182632596|gb|ACB93372.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa M23]
 gi|307578766|gb|ADN62735.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 491

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 146/456 (32%), Gaps = 41/456 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++        +     
Sbjct: 15  DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132
               V  +   L  +A           T++ +TG+ GKT+T ++L  A            
Sbjct: 75  A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133

Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +      +    + +   L ++  D    +  + +S     +     V   +
Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     +E    AKA +F   +    +    D     LL   ++ +  + 
Sbjct: 193 AVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFGLRLLHGLANGVR-RV 251

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S     +AD   +      +    ++ +      V    +G     N+L   G++  L
Sbjct: 252 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYAL 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +      LS   P  GR    R     G   ++ +  +   A       VLS +S H
Sbjct: 312 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             GR I V G     G            V++  N   V ++  +            +   
Sbjct: 366 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             R   V                   GDVV++  K 
Sbjct: 422 FVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 457


>gi|190572797|ref|YP_001970642.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia K279a]
 gi|190010719|emb|CAQ44328.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia
           minopimelate ligase [Stenotrophomonas maltophilia K279a]
          Length = 502

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 140/480 (29%), Gaps = 47/480 (9%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            A   GA +++      A + + +     V  +   +  +A            ++ +TG+
Sbjct: 55  QARAAGASVILFEPPAPAELPAPAD-AIAVPGLRARMGAMADQFHGAPSRSMAMVGVTGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDF 162
            GKT+T ++L  A   +      I              G    L            D   
Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +     V   +AV T +   HL     +    +AKA +F        
Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDMASYGAAKARLFHRPGLKAA 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D    +L       +    + S G     D  +R      +   +  +L      
Sbjct: 234 VINLDDAFGGQLFAGLPAGVQPIGLSSRG---ATDASVRAEALQLDGRGIAFELVIDGQR 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                          +     ++          A  +   +  RG+  R     G  T++
Sbjct: 291 AAVQSPLLGRFNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMNRLGGEDGLPTVV 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +   A        L  +  H +G    V G     G    +        ++    +
Sbjct: 351 VDYAHTPDA----LEQALDSLHGHLQGTLFCVFG----CGGERDTGKRPQMATIAERLAN 402

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +      +  V    +              GD++++  K 
Sbjct: 403 KVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 462


>gi|28199739|ref|NP_780053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
 gi|32129763|sp|Q87AF5|MURE_XYLFT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|28057860|gb|AAO29702.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa Temecula1]
          Length = 495

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 82/456 (17%), Positives = 146/456 (32%), Gaps = 41/456 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++        +     
Sbjct: 19  DVVISGLVMDSREVQPGDAFVAVAGFGVHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132
               V  +   L  +A           T++ +TG+ GKT+T ++L  A            
Sbjct: 79  A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 137

Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +      +    + +   L ++  D    +  + +S     +     V   +
Sbjct: 138 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 196

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     +E    AKA +F   +    +    D     LL   ++ +  + 
Sbjct: 197 AVFTNLTRDHLDYHGDMEHYGEAKARLFAHQDVQAAVINVDDLFGLRLLHGLANGVR-RV 255

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S     +AD   +      +    ++ +      V    +G     N+L   G++  L
Sbjct: 256 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLTVAGVLYAL 315

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +      LS   P  GR    R     G   ++ +  +   A       VLS +S H
Sbjct: 316 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 369

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             GR I V G     G            V++  N   V ++  +            +   
Sbjct: 370 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 425

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             R   V                   GDVV++  K 
Sbjct: 426 FVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 461


>gi|21220569|ref|NP_626348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces coelicolor A3(2)]
 gi|8134580|sp|Q9S2W7|MURE_STRCO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|5689961|emb|CAB51998.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Streptomyces coelicolor A3(2)]
          Length = 506

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 146/476 (30%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +            + GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLGAA 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +P   VDD    + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPAGAERAAAAGLPALVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L + K T              +   R   +                    + +S 
Sbjct: 135 LVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGTEAVAMEVSS 194

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          IAV T ++P H+   SG+E+   AKA++F   +++    +N DD +
Sbjct: 195 HALVLGRVDACVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQLFT-PKRSRLGVVNVDDEY 253

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  ++    +    ++    + D   R  +           + G   E +       
Sbjct: 254 GRRLAKEATVPVV----TYSAEGHPDADWRADEVEVGPLDSTFTVLGPKGERIAAKSPLA 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L A       A        G   R         F  + +  +    
Sbjct: 310 GPFNVANTLAAIVALAAAGLDPQSAADGVAAVPGVPGRLERVDEGQPFFAVVDYAH---- 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
              A  SVL  +    EG+  AVLG     G    +   +              L+  + 
Sbjct: 366 KTDAVESVLRALRKVTEGKLHAVLG----CGGDRDTTKREPMGAAVARFADTAVLTSDNP 421

Query: 412 LA---------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +         +              V   E          +    GD V+V  K 
Sbjct: 422 RSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477


>gi|317508858|ref|ZP_07966497.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
 gi|316252819|gb|EFV12250.1| UDP-N-acetylmuramyl-tripeptide synthetase [Segniliparus rugosus
           ATCC BAA-974]
          Length = 522

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 76/461 (16%), Positives = 142/461 (30%), Gaps = 45/461 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS-IPV 85
           V+G++  +++  P + F A+ G    G  +   A  +GA  V+ +    A +  +  I V
Sbjct: 37  VSGVTQSAQTAQPGDLFVALPGAKTHGAKYAPLAKARGAVAVLTDAAGAALLEDVGEIAV 96

Query: 86  FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                   +L  L+           T++ +TG+ GKTTT  +L     +  +    IG+ 
Sbjct: 97  LTAATPRSSLGALSALVYGDPSARLTVVGVTGTAGKTTTTYLLESLFQAAGRMTGVIGTV 156

Query: 144 NNHIG------------VPLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189
              IG             P T A + V  + G+  + M  S            R   A  
Sbjct: 157 ETRIGSTSLASSFTTPEAPATQALLAVMAEAGVGAVLMEVSSHALDFGRVDGTRFAAAGF 216

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKT-----GTIFLNYDDSFFELLKAKSHALGI 244
           T ++  HL +   +E    AKA++FE               +        +  +    G 
Sbjct: 217 TNLSQDHLDHHGDMESYFQAKAKLFEPGSPVAAGRAVVCVDDAWGERMSQVAREGAGRGA 276

Query: 245 KTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +   +   S   AD+ +   ++    +   V    +  ++                L + 
Sbjct: 277 QAPVTVATSGARADWTVLDRQEDDHGAQEVVVRDPRGQKLRFRLNLLGRHNAANALLALG 336

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A ++   + L  +      G+  R    Q F  ++D ++          + VL  +
Sbjct: 337 LAEAAGLEVGPELLRGWASISVPGRLERVDAGQDFLAVVDYAHKPEA-----LVKVLHAL 391

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
             H EGR   V+G     G         +           V ++  +            +
Sbjct: 392 REHTEGRIAVVVGA----GGDRDQGKRPIMGEACALGAELVVVTDDNPRTEDPAVIRAQV 447

Query: 415 KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                 S                        GD V+V  K 
Sbjct: 448 LAGAQESGRAEVWEVGDRAEAIARAVGWARAGDTVLVAGKG 488


>gi|255325349|ref|ZP_05366455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
 gi|255297914|gb|EET77225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium tuberculostearicum SK141]
          Length = 511

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 152/482 (31%), Gaps = 52/482 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS  +     F A+ G    G  F   A    A
Sbjct: 4   SLDTLAQLSGGRVIG-DASVEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKA 59

Query: 66  GLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G V+ +   +   +    + P+  V+D+   L  ++           T+I +TG+ GKTT
Sbjct: 60  GAVLTDAAGLDLLTKDQETRPIVVVEDIRAVLGPISAEIYGHPTRDLTVIGVTGTSGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166
           T  +L   L     +   IG+                     +    ARM  +    +  
Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVV- 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     +E+   AKA++F G +      L 
Sbjct: 179 MEVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLC 238

Query: 227 YDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD + E ++  AKS    + T+ + G +     +    +  +    + +   G      
Sbjct: 239 IDDEWGERMRGVAKSAGHPVTTVATQGAAATISARQTATEA-TGAQEVALNYDGADFTFR 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N  + LG+ + +  D    +  +                     F  + +
Sbjct: 298 LPLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAVPGR----MERIDRGQDFVAVVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   PA++ A +  L        GR   V+G     G    S    +    +       
Sbjct: 354 -YAHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA----GGDRDSSKRPIMGAAAASRADLT 408

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +  +              +DA P    +    +       +      GD V+V  
Sbjct: 409 VVTDDNPRSEDPATIRAAVVEGARDAAPEG-DIREVGSRARAIDEVVDWAEPGDAVIVVG 467

Query: 450 KS 451
           K 
Sbjct: 468 KG 469


>gi|330875014|gb|EGH09163.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 144

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130


>gi|257483453|ref|ZP_05637494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 185

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
                  +  +++DSR++ P + F A+ G   DG   I  A+++GA  V    +    + 
Sbjct: 11  HTDRDPLIRELTLDSRNVRPGDLFLAVPGIKVDGRAHIADALKRGAAAVAYEVEGSTVLP 70

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P+  V  +   L+ +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 71  ITDVPLIPVKGLAAQLSDIAGRFYGDPSRSLNLVGVTGTNGKTSVTQLVAQALDALGQHC 130


>gi|182439209|ref|YP_001826928.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
 gi|326779861|ref|ZP_08239126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
 gi|178467725|dbj|BAG22245.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326660194|gb|EGE45040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 572

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 150/476 (31%), Gaps = 46/476 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   + G    G V GI+ DSR++ P + + A+ G  + G DF   A   GA 
Sbjct: 66  LGELADRLGVEAAGT---GEVTGITHDSRAVRPGDVYAALPGARFHGADFAAQAAGLGAA 122

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            V+ +        +  +PV   +D    + +LA     R    +  + ITG+ GKTTT  
Sbjct: 123 AVLTDPAGAERAAATGLPVLVTEDPRAVMGELAADIYGRPGIGLLQLGITGTSGKTTTAY 182

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L +  +    IG+    IG     +    P   D       M   G       + 
Sbjct: 183 LVEGGLRAAGRPTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          +AV   ++P H+   SG+E+   AKA++F        +    D+ 
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTPERSHRGVVNFDDEY 302

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              LL           + SF    + D                    G   E +      
Sbjct: 303 GRRLLTE-----SGVPVTSFSAEGHPDADWHAEDVEVGPQDSTFTAVGPKGERITARAPL 357

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+  TL  +  L         A        G   R         +  + +  +   
Sbjct: 358 PGPFNVANTLAAIVTLAVAGVDPQIAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH--- 414

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-- 408
               A  SVL  +    EGR   VLG     G+   +    +    +    + V  S   
Sbjct: 415 -KTDAVESVLRSLRKVTEGRVHIVLG---CGGDRDTTKRGPMGAAAARLADTAVLTSDNP 470

Query: 409 --FHVLALKDA-LPRSIHVHYSETMDGLFL--------FIQSSLVDGDVVVV--KS 451
                LA+  A L  +  V   E  D L             +    GD V+V  K 
Sbjct: 471 RSEDPLAILAAMLSGAAEVPVHERGDVLVDADRASAIAAAVARAEPGDTVLVAGKG 526


>gi|271964369|ref|YP_003338565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
 gi|270507544|gb|ACZ85822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptosporangium roseum
           DSM 43021]
          Length = 514

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 91/481 (18%), Positives = 157/481 (32%), Gaps = 47/481 (9%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           PL     LL A  G      P   V+GI+IDSR +   + + A+ G    G  F   A+ 
Sbjct: 10  PLSGLASLLGAPSGT--SRAPLAAVSGITIDSRQVQRGDLYVALPGATSHGAGFSAQALA 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
            GA  ++ + +  A+  +  +PV  V D    L +++     R      +I +TG+ GK+
Sbjct: 68  AGASAILTDEEGRAAAVATGLPVLVVPDPRRVLGQVSAWVYGRPAADVMVIGVTGTSGKS 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--------------MPVDVDFGIFE 166
           TT  +L   L +       IG    H G      +              +  +       
Sbjct: 128 TTTFLLEAGLRAAGHKAGLIGGVEIHAGELRFTPKLTTPEASDLQGLFALMREHGVTAAA 187

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S           V   +A+ T ++  HL     +++  + KA +F        +   
Sbjct: 188 MEVSSHALALGRVDAVFYDVALFTNLSQDHLDFHKDLDDYFATKARLFTPEMSRAGVVNI 247

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D    ELL     +    T +S   +  AD++    +  ++ S   V   G   E    
Sbjct: 248 DDAHGRELL---GLSKIPMTTFSAEGALEADWRAADVRLGADGSSFRVVGPGGVEEDATV 304

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N+   LG +  L         A++      G   R         F  I + Y
Sbjct: 305 --ALPGPFNVANALGAIVSLVEAGVPLRAAVAGVGTLAGVPGRMERVPGGEDFQAIVD-Y 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +  P ++++ +     +     GR   VLG     G         +    +        L
Sbjct: 362 SHKPGAVESVLRS---LREVTTGRLTVVLG----CGGDRDRGKRPMMGEAAARLADVAIL 414

Query: 407 SGFHVLA------LKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +  +  +      L + +  +         HV              S    GDVVVV  K
Sbjct: 415 TSDNPRSEDPLRILAEMMNGALGVSHDERAHVIIEPDRAAAIDLAISRAGFGDVVVVAGK 474

Query: 451 S 451
            
Sbjct: 475 G 475


>gi|325473281|gb|EGC76476.1| hypothetical protein HMPREF9353_02271 [Treponema denticola F0402]
          Length = 303

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 80/241 (33%), Gaps = 32/241 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI-----------APQEAFFAIKGP 49
           M    +  + ++AI+  +     +  +N +  DSR +               AFFA+ G 
Sbjct: 22  MEYTKSIAECIKAIEVVNCFGNDKSLINSVEYDSRKVRAYSYDDKTGLKKGAAFFALPGI 81

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           H DG  FI  A++ GA  +    D+  +     I    V+DV   ++K++         T
Sbjct: 82  HTDGKKFINSAIENGAVCIFYEGDL-NNHSCDEICFVQVNDVRKTMSKVSALLYDEPSRT 140

Query: 110 --IIAITGSVGKTTTKEMLTI---ALSSIKKTYACIGSYNNHIGVPLTLARMPV------ 158
             +I +TG+ GK++T   +             ++ +    +   +P    +         
Sbjct: 141 LGVIGVTGTEGKSSTVSFIFQLLNLCGKKAGFFSTVEYSIDGNVIPNPEHQTTPESNIVQ 200

Query: 159 ---------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                       + + E     L         V     V   +   HL     IE+    
Sbjct: 201 LRLAQMRDSGCGYAVVEASSHGLSPRTARLEDVIFDAGVFMNVTQEHLEFHGTIEQYRYD 260

Query: 210 K 210
           K
Sbjct: 261 K 261


>gi|160939823|ref|ZP_02087170.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437257|gb|EDP15022.1| hypothetical protein CLOBOL_04714 [Clostridium bolteae ATCC
           BAA-613]
          Length = 511

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 70/477 (14%), Positives = 136/477 (28%), Gaps = 48/477 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
               L  +    +       V  +  DSR   P   F  + G   D H F+   ++ G  
Sbjct: 3   LRTWLNELDYELVRGSLDVEVTEVVYDSRKAVPGAVFVCMAGTRVDSHRFVPDVLRAGVR 62

Query: 67  LVVVNTDMVASIGSLS--------IPVFGVDDVLGALNKL--AVAARLRSKATIIAITGS 116
           ++V   D+   + +          + +    +   +L  L  A      SK   I +TG+
Sbjct: 63  VLVTERDIEEELAASGLAEHEMGRVTILKTAEARRSLALLSAARFGYPASKMITIGVTGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYN---------NHIGVP-----LTLARMPVDVDF 162
            GKTTT  M+   L +  K    IG+                P             +   
Sbjct: 123 KGKTTTTHMIKAILEAAGKKVGMIGTTGTVINGQVTPTMNTTPESYELHQSFAKMAEAGC 182

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G        +     + T I+P H+       + A         L     
Sbjct: 183 QYMIMEVSSQGIKMHRVDGLAFDYGIFTNISPDHIGP-DEHADFAEYLCCKSRLLSMCRI 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--- 279
             +N +D  F+ +   +                ADF+    +  S   ++  +       
Sbjct: 242 GLVNLNDGHFKEIVKDASCRLYTYCVKEDGETKADFEASNVRYVSRPDFVGTEFDVTGNL 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            M+V     G     N L  L + S L    D  + AL           R          
Sbjct: 302 DMDVRLGIPGLFNVDNALAALCVCSFLGLPKDRIVHALEHIR----VNGRMEIVYTSSRC 357

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++ +  +   +      S+L+ +  +   R + V G      +  +    ++   L+  
Sbjct: 358 TVLVDYAHNAVS----MESLLTTLRQYHPRRLVVVFGCGGNRSKDRRYSMGEIGGRLADL 413

Query: 400 NISHVWL--------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +I                 +  ++ ++ +                        GD++
Sbjct: 414 SI---ITADNSRYEKVEDIMADIRGSIEKTGGDFVEIPDRRDAIRSSILHAQPGDMI 467


>gi|118462627|ref|YP_881535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
 gi|254775003|ref|ZP_05216519.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|167017295|sp|A0QF47|MURE_MYCA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|118163914|gb|ABK64811.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium avium 104]
          Length = 520

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 144/480 (30%), Gaps = 53/480 (11%)

Query: 10  LLQAIQGHSIGIV-----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           L   +     G       P   V G+++ ++ + P + F A+ G    G      A+++G
Sbjct: 21  LADQVGAVMAGPDRRAAVPDVTVTGVTLRAQDVLPGDLFAALPGATTHGARHAAEAIERG 80

Query: 65  AGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           A  V+ +   VA + G  + P          L +LA A         T+I ITG+ GKTT
Sbjct: 81  AVAVLTDAAGVAQLTGGRTTPTLLHPRPRSVLGELAAAVYAHPSERLTVIGITGTSGKTT 140

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165
           T  ++   L +  +T   IG+    I                   L  A     VD  + 
Sbjct: 141 TTYLVESGLRAAGRTAGLIGTVGIRIDGADIPSALTTPEAPALQALLAAMAEQRVDTVVM 200

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   +  +    R  +   T ++  HL     + +   AKA +F+          
Sbjct: 201 EV-SSHALALGRV-DGTRFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPNSPLRAHRA 258

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       +  A       +                       +  +   +     
Sbjct: 259 VVCIDDE---AGREMAARAGDAVTVSAEGQPAHWRAVEVAPLGTGGQQFTVIDPAGVQHR 315

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            GI      N+   L  +++L A   +  +A          G+       Q F  L+D +
Sbjct: 316 AGIRLPGHYNVANCLVALALLDAVGVSPEQAAPGLLQTRVPGRMEEIDAGQDFLALVDYA 375

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +         A+  +       + R   V G     GE        +    +      V 
Sbjct: 376 HKPG------ALRAVLSSLKRPDRRLAVVFGA---GGERDPGKRAPMGATAAEL-ADLVV 425

Query: 406 LS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     G    A++  +         +  V              +    GDVV+V  K 
Sbjct: 426 VTDDNPRGEDPAAIRREILAGATESGCAAEVIEIGDRRAAIRHAVAWAGPGDVVLVAGKG 485


>gi|194364376|ref|YP_002026986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas maltophilia R551-3]
 gi|194347180|gb|ACF50303.1| UDP-N-acetylmuramyl-tripeptide synthetase [Stenotrophomonas
           maltophilia R551-3]
          Length = 502

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 144/480 (30%), Gaps = 47/480 (9%)

Query: 1   MNPLWTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M+P      LL   A+ GH         + G+ +DSR++ P  AF AI G    G  F+ 
Sbjct: 1   MSPSMLLSQLLPDVALAGH------DPVLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVE 54

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            A   GAG ++       +     +    V  +   +  +A            ++ +TG+
Sbjct: 55  QARAAGAGAILF-EPPAPAELPAPVDAIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDF 162
            GKT+T ++L  A   +      I              G    L            D   
Sbjct: 114 NGKTSTVQLLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGA 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +     V   +AV T +   HL     +     A             
Sbjct: 174 RAVAMEVSSHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDM-ASYGAAKARLFHRPGLKA 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+F   L A   A       S   + +A  +    +        E+ + G+   
Sbjct: 233 AVINLDDAFGRQLFAGLPAGVQPIGLSSRGATDAIVRAEALQLDGRGIAFELAIDGQRAA 292

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L   G +      +    + LS   P  GR    R     G  T++
Sbjct: 293 VQSPLLGRFNVDNLLAVAGTLHAQGQPLARIAEVLSALQPIRGRMN--RLGGEDGLPTVV 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +   A        L  +  H +G    V G     G    +        ++    +
Sbjct: 351 VDYAHTPDA----LEQALDSLHGHLQGTLFCVFG----CGGERDTGKRPQMAAIAERLAN 402

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +            +      +  V    +              GD++++  K 
Sbjct: 403 QVIVTDDNPRGEDGDVIVADILAGFTDASAVTVQRSRARAIGLAVKRANAGDIILIAGKG 462


>gi|229184422|ref|ZP_04311629.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
 gi|228599218|gb|EEK56831.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Bacillus cereus BGSC 6E1]
          Length = 124

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 6/117 (5%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-DGHDFILHAVQ 62
                L + I  G          ++G+ IDS++I     F  I      DGH+++  ++ 
Sbjct: 10  MNLKKLEEVINGGGLHESFHHLEIHGVRIDSKNIKEGNVFVPII--RVKDGHEYVKESMD 67

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            GA   +             +P+  VDD L AL +LA   R      +I ITGS+ K
Sbjct: 68  NGAVASLWKKSYG--TPPKGVPIIFVDDTLFALQQLAQFYRREINVKVIGITGSMAK 122


>gi|148360435|ref|YP_001251642.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|296106499|ref|YP_003618199.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|148282208|gb|ABQ56296.1| UDP-N-acetylmuramyl-tripeptide synthetase MurE [Legionella
           pneumophila str. Corby]
 gi|295648400|gb|ADG24247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 483

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 144/457 (31%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFVAYPGAASDGRLYIEKAVASGAVAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185
           IG+                P  L    +   +         + +S     +     +   
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHRVDSLEFS 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     ++  A   A+            +   D  F+ L +      + 
Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERAELQWAIINQDDDFQDLMSNVLKTHV- 253

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  +N D +  +W      + +EV+       +    +G     N L     +  
Sbjct: 254 KKVTYGMHQNCDVKALQWNMDITGTEIEVKSPWGHQLLKIKALGKFNIYNSLAVYSSLLA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + +  ++ ++      GR       + Q  + L+D ++  +        +VL  +  
Sbjct: 314 SGHNPEKVVQVMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
             +GR   V G     G         +    +     ++ ++  +            +  
Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +P S  V      +    +        D++++  K 
Sbjct: 421 GIPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|81300293|ref|YP_400501.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
 gi|123556803|sp|Q31N55|MURE_SYNE7 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81169174|gb|ABB57514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 7942]
          Length = 497

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 140/493 (28%), Gaps = 72/493 (14%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59
                LL +     +          + G+  DSR   P + F  + G   DG  F     
Sbjct: 1   MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 60

Query: 60  ------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106
                       A+ +                +    +   D +      +A A   +  
Sbjct: 61  AAGAVAVIVTPTALAQ-----------RPLSANPEACLILSDQMPVTAGAIAAAFYNQPA 109

Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-- 154
               +I +TG+ GKTTT  ++   L++                  S       P      
Sbjct: 110 QTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQ 169

Query: 155 -----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +       + E+  SH  +   +       +AV T +   HL     +E   +A
Sbjct: 170 AQLATAVDAGCQAAVMEV-SSHALDQGRVNGCG-FDVAVFTNLTQDHLDYHGTMEAYFAA 227

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA +F      G   +N DD++ + L             ++     ADF     +     
Sbjct: 228 KARLFAPPYLRGKAVINADDAYGQRLI---TMTPPGQCLTYSVVGTADFCTTDLQYGPTG 284

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               ++    +       +G     N+L  +     L   ++T +  +  F    GR   
Sbjct: 285 VEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGR--M 342

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R        T+I + Y   P S++  +       P  +G  I V G     G       
Sbjct: 343 ERVVGQDSDPTVIVD-YAHTPDSLENLLKAA---RPFIQGELICVFG----CGGDRDRTK 394

Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
             L   ++      V ++  +            +   +P +  V               S
Sbjct: 395 RPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILS 454

Query: 441 LVDGDVVVV--KS 451
              GD V++  K 
Sbjct: 455 AQPGDGVLLAGKG 467


>gi|56752479|ref|YP_173180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
 gi|56687438|dbj|BAD80660.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2 6-diaminopimelate ligase
           [Synechococcus elongatus PCC 6301]
          Length = 502

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 140/493 (28%), Gaps = 72/493 (14%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-- 59
                LL +     +          + G+  DSR   P + F  + G   DG  F     
Sbjct: 6   MNLRSLLASTPTQVLQPQHAALDLAITGLQTDSRRCQPGDLFLGMPGTQVDGGQFWPEAI 65

Query: 60  ------------AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106
                       A+ +                +    +   D +      +A A   +  
Sbjct: 66  AAGAVAVIVTPTALAQ-----------RPLSANPEACLILSDQMPVTAGAIAAAFYNQPA 114

Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTLA-- 154
               +I +TG+ GKTTT  ++   L++                  S       P      
Sbjct: 115 QTLKLIGVTGTNGKTTTTHLVEHFLNAADTKTALLGTLYNRWPGYSEVAQHTTPFATDLQ 174

Query: 155 -----RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +       + E+  SH  +   +       +AV T +   HL     +E   +A
Sbjct: 175 AQLATAVDAGCQAAVMEV-SSHALDQGRVNGCG-FDVAVFTNLTQDHLDYHGTMEAYFAA 232

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA +F      G   +N DD++ + L             ++     ADF     +     
Sbjct: 233 KARLFAPPYLRGKAVINADDAYGQRLI---TMTPPGQCLTYSVVGTADFCTTDLQYGPTG 289

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               ++    +       +G     N+L  +     L   ++T +  +  F    GR   
Sbjct: 290 VEGTIKTPDGAFPFRSPLVGQFNLANLLGAIAAGWTLGLPIETMLAVVPDFVGVPGR--M 347

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R        T+I + Y   P S++  +       P  +G  I V G     G       
Sbjct: 348 ERVVGQDSDPTVIVD-YAHTPDSLENLLKAA---RPFIQGELICVFG----CGGDRDRTK 399

Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
             L   ++      V ++  +            +   +P +  V               S
Sbjct: 400 RPLMGEIAARLADRVIITSDNPRTEDPRQILADIVAGIPAASPVVVEADRAAAIRQAILS 459

Query: 441 LVDGDVVVV--KS 451
              GD V++  K 
Sbjct: 460 AQPGDGVLLAGKG 472


>gi|260437320|ref|ZP_05791136.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
 gi|292810232|gb|EFF69437.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Butyrivibrio crossotus DSM 2876]
          Length = 490

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 155/472 (32%), Gaps = 36/472 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +       +  +  DSR     + F  + G   DGH +I     KG
Sbjct: 1   MKLSKLLEKLEYEVLNGNVDIDIENLVYDSRKAGALDVFVCVTGAVSDGHTYISDVAGKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
              +VV  D+  +     I +    D   AL  ++ A       K   I ITG+ GKTTT
Sbjct: 61  VLAIVVQKDIEVTEELKDITLIKTADTRYALALMSAAFFDYPAKKLKTIGITGTKGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELG 168
             M+   L         IG+    IG              +        V+       + 
Sbjct: 121 TFMIRDILEKCNIKAGLIGTNETIIGDEHIPSKNTTPESFLIQKYFSQMVEAGCSCVVME 180

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S    +   T  +   I V T I P H+          ++  E  E   +     ++  
Sbjct: 181 VSSQALMLNRTAGILFDIGVFTNIEPDHIGP-----NEHASFEEYMECKSRLFKQCVHGI 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +       K       T+ ++G    AD +    +   E   +           ++  +
Sbjct: 236 GNADSEYFDKIMEGHTCTLETYGIKNKADLKAENIRYIHEGGNITTSYNTTGTRELNIKL 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 ++  +L  +++           L   +     G+     ++  F  +ID ++NA
Sbjct: 296 TLPGEFSVYNSLCAIAVSEHFNVDDKLLLDALYNTRVAGRVEPVKVSDDFIVMIDYAHNA 355

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGD-----MCEMGELSQSFHI-DLAEVLSLYNIS 402
              S+++ +S L + +P+         G+       EMGE+S       +    +  +  
Sbjct: 356 --MSLESLLSTLREYNPNRIVCLFGCGGNRSKLRRFEMGEVSGRMADLTIITSDNPRDED 413

Query: 403 HVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
            V +    +  ++  + ++   +   E       +       GD++V+  K 
Sbjct: 414 PVLI----MQDIETGIKKTSGSYVMMEDRGEAVKYAIEHGEKGDIIVLAGKG 461


>gi|307328747|ref|ZP_07607918.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
 gi|306885555|gb|EFN16570.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           violaceusniger Tu 4113]
          Length = 492

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 146/483 (30%), Gaps = 51/483 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF-VN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H +   P+   +  G + D   + P   F A+ G    G   +  A+ 
Sbjct: 1   MKLSELLAGHDHHILQGDPETTWITAGTTFDVGRVTPGSLFIAVPGHGEGGPGSVGPALA 60

Query: 63  KGAGLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
           +GA  V+V+       + +  +    V D   A   +A         +  ++AITG+ GK
Sbjct: 61  RGAAAVLVDGGAPDLPMSAAGVCAVSVPDTRTAAAVVASRYFGAPGRQMDMVAITGTNGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG------VPLTLARMPVDVDFGIFELGMSHLG 173
           T+   M+   L   +     +              +P ++   P   D       M   G
Sbjct: 121 TSVSYMVESVLRLSEGATVGVIGTAGSRIGDEPILMPRSVLTTPESPDLQYLLGCMRDRG 180

Query: 174 EIR------------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                                   + V T +   HL +   +E    AK  +F+G     
Sbjct: 181 AGSVVLEATSMALLTHRVDCAFIDVGVFTNLTQDHLDDHGTMENYRDAKLRLFQG--LCR 238

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD     ++A               ++ AD++  +    +  +   +   G+  
Sbjct: 239 RAVVNADDPVGAGIQAMMPGAVTTYGL---DTEAADYRATELTVDASGTRFVLHHDGRKY 295

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G +   N L T+     L  D+   + AL    P  GR +R+R          
Sbjct: 296 PAAIPVPGRYSVANALATVAACHALGHDLGGLVAALDRMPPVPGRFERFRTPRGTSVIVD 355

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S  +   VL+ I     GR I V G     G    +        ++  + 
Sbjct: 356 YA-------HSPDSLDKVLTTIRGFAPGRVITVFG----CGGDRDTTKRAEMGEIAGTHS 404

Query: 402 SHVWLSG-----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
               L+          A+ D +                      F  S+    D+V++  
Sbjct: 405 DLCILTSDNPRNEDPEAILDQITPGLTATGTPFERFTDRRRAIAFALSAAGPDDIVLIAG 464

Query: 450 KSS 452
           K S
Sbjct: 465 KGS 467


>gi|163760795|ref|ZP_02167875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
 gi|162282117|gb|EDQ32408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hoeflea phototrophica DFL-43]
          Length = 489

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 84/473 (17%), Positives = 150/473 (31%), Gaps = 39/473 (8%)

Query: 5   WTFHDLLQAIQ-GHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
                L+ A+  G             V G++ DSR + P   FFA+ G   DG  F+  A
Sbjct: 1   MNLSALISALPPGTLSAPSSANLDFSVTGLTADSRVVEPSNLFFALAGVKTDGARFVQEA 60

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           + K  G   +     A I +  + V   DD   AL ++A A        + A+TG+ GKT
Sbjct: 61  ISK--GAAAIVAASGAGISTDGVAVLRSDDPRLALARMAAAFFGPQPRVMAAVTGTAGKT 118

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-------------- 166
           +    L    +   +  A +G+             +       +                
Sbjct: 119 SVASFLRQIWAHAGEKAAMLGTTGVVAPGRSEYGSLTTPDPVALHRLLAELASEGVTHAA 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G  +     V   +A  T +   H+     +E+  +AK  +F+ L   G   + 
Sbjct: 179 MEASSHGLDQRRLDGVMLSVAGFTNLGRDHMDYHPTMEDYMAAKMRLFDTLLPKGAPAVI 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           + D  +     +        + + G+       L++ +    +   EV L G+  E+   
Sbjct: 239 FADDPWSEQAVEVAERAGARVLTVGRKGGF-LSLKRVEHLRHKQIAEVHLDGRIFEIHVP 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N L+  G+        D A+ AL       GR +      +      +D ++
Sbjct: 298 LAGDFQISNALVAAGMAIATGTGADQAMAALEHLTGASGRLELVGSTGDGAPA-YVDYAH 356

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      +VL  + P   GR I V G     G         +   ++      V +
Sbjct: 357 KPEAME-----NVLDAVRPFTTGRIIMVFG----CGGDRDRGKRPIMGSIATKLADVVIV 407

Query: 407 SGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +           + L  +                   L  GD ++V  K 
Sbjct: 408 TDDNPRTEDPAEIRSEILVAAPGATEIADRAEAIRTAVEMLEAGDTLIVAGKG 460


>gi|289209366|ref|YP_003461432.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
 gi|288944997|gb|ADC72696.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thioalkalivibrio sp.
           K90mix]
          Length = 505

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 95/491 (19%), Positives = 164/491 (33%), Gaps = 63/491 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGF-------VNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M    T   +   +        P          V  ++ DSR + P   F A++G    G
Sbjct: 1   MMAANTVQTVAT-LGRLWPAGAPALPSEVAGQRVTDLAQDSRRVTPGAVFVALRGTQGHG 59

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TII 111
                 A ++GA  ++ +     +  +LSIPV  +  +  AL  +  A      A   ++
Sbjct: 60  LAHARAAAEQGAVAILWDE--AEAAPALSIPVLHLPGLRVALPAICDALWGAWPADYPVV 117

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGS------------YNNHIGVPLTLARMPVD 159
           A+TG+ GKT+  ++   AL  +      +G+             +   GV      +   
Sbjct: 118 AVTGTDGKTSVSQLFAGALEQLGVPTGVVGTLGTGRFGALEDCGHTTPGVIDLHRHLAHL 177

Query: 160 VDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              G   L    S  G  +     +   +AV+T +   HL      +  A AKA +    
Sbjct: 178 TADGCRALSIEASSHGLEQGRMAGLPVRVAVLTRLGSDHLDFHGSQQAYADAKARL-FAW 236

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
               T  LN DD+  + L  ++ A  I T  + G   +AD   R+ +  S+     +++ 
Sbjct: 237 PGLETAVLNADDALGQRLIRETTAEHILTYSAVG--ASADLVAREVEAGSDGIRFTLEVA 294

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G++  V     G     N+L TL  +  L      A+ A+S      GR +R+       
Sbjct: 295 GEAWPVQAALFGLFQVGNLLATLAALRALGHSWPAAVDAVSRLRGVPGRMERFELPSGAL 354

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                  +  A  A        L  + PH  GR IAV G     G              +
Sbjct: 355 LVVDYAHTEQALAA-------ALDALRPHTAGRLIAVFG----CGGDRDVTKRPAMGRAA 403

Query: 398 LYNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFI----------QSSLV 442
                 V ++          A++ A+                  +           +   
Sbjct: 404 SARADQVIVTDDNPRSEDPAAIRAAVLAGC------DRPEACRELGDREAAVRAAVAEAG 457

Query: 443 DGDVVVV--KS 451
            GDV+++  K 
Sbjct: 458 PGDVILLAGKG 468


>gi|289671024|ref|ZP_06492099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 495

 Score =  101 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 145/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V G+ +DSR +AP +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
              GAG V+       +   +      V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  HANGAGAVLFE-PPAPNGMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  A++ +                      +   + +P       +  +    
Sbjct: 115 KTSTVQLLAQAMTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  +   AL    + S      AD  +       + + +   L  +     
Sbjct: 235 NLDDAFGRTLFASLDPALRAIGVSS---RAQADASVSAQALQLDHNGINFALNIQGEVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   ++  A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +       V++  N    
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAVIAELNADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                        D+V++  K 
Sbjct: 404 IVTDDNPRSEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASASDIVLIAGKG 461


>gi|300858819|ref|YP_003783802.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686273|gb|ADK29195.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206524|gb|ADL10866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis C231]
 gi|302331079|gb|ADL21273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis 1002]
 gi|308276766|gb|ADO26665.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium pseudotuberculosis I19]
          Length = 503

 Score =  101 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 83/481 (17%), Positives = 143/481 (29%), Gaps = 53/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L     G   G      +  IS+DS+ +     F A+ G    G  +        A
Sbjct: 10  TLGFLAALTGGELHG-DKDIVIEEISLDSQELPQGGLFAALPGTRSHGAKYAQETQ---A 65

Query: 66  GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
             ++ +      +       P   V++V G L  ++     R      II ITG+ GKTT
Sbjct: 66  AAILTDAAGAEILRESGDTRPRLVVENVRGILGTVSAEIYGRPSDSLQIIGITGTSGKTT 125

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPL----------------TLARMPVDVDFGIF 165
           T  ML   L +  K+   IG+    I                        +   V   + 
Sbjct: 126 TSYMLEAGLINAGKSVGLIGTTGTRINGVKIPTKLTTPEAPTLQKLFAQMLTQGVTHVVM 185

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   +  +        A  T ++  HL     +EE   AKA +F+      T   
Sbjct: 186 EV-SSHALSLGRV-SATHFAAAGFTNLSQDHLDFHPTMEEYFEAKALLFDPASSVHTKKT 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVV 284
                    L+    +       S      ADF +       +      V  +   + V 
Sbjct: 244 VICIDEPWGLQMLERSGAEALSVSMASDTQADFVVSNLTVDAAGGQRFVVTHEDDEIAVD 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N  + +G+ S +  D+D  +  L         G+  R    Q F  ++D 
Sbjct: 304 LPIPGAFNVANAALAIGLASSVGIDLDRFVAGL---TAVSVPGRMERVNRGQDFLAIVDY 360

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++           +VL  +     GR   V+G     G         +    S      V
Sbjct: 361 AHKPAA-----VAAVLEAVRRQAAGRVAIVVGA----GGDRDRSKRAIMGKESALRADLV 411

Query: 405 WLSG-----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            ++           +++A+         +  +              +     D V++  K
Sbjct: 412 IVTDDNPRSEDPALIREAILTGAQKAATTAEIREVGDRREAIKQAVAWAQPTDAVIIAGK 471

Query: 451 S 451
            
Sbjct: 472 G 472


>gi|15827429|ref|NP_301692.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae TN]
 gi|221229906|ref|YP_002503322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium leprae Br4923]
 gi|6093448|sp|O69557|MURE_MYCLE RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|3080478|emb|CAA18673.1| udp-n-acetylmuramoylalanyl-d-glutamate --2,6-diaminopimelate ligase
           [Mycobacterium leprae]
 gi|13092979|emb|CAC31290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae]
 gi|219933013|emb|CAR71004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopime ligase
           (meso-diaminopimelate-adding enzyme) [Mycobacterium
           leprae Br4923]
          Length = 530

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 83/485 (17%), Positives = 160/485 (32%), Gaps = 55/485 (11%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L+  +              P   V G+++ ++ +   + F A+ G    G  +   A
Sbjct: 21  LPELVAQVGAVLADGPGQAATVPDIPVTGVTLRAQEVLSGDLFAALAGASTHGARYAGVA 80

Query: 61  VQKGAGLVVVNTDMVASIG--SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
           +++GA  V+ +   VA +   + S+P+    +    L  LA AA        T++ ITG+
Sbjct: 81  LERGAVAVLTDVAGVAELTAQASSVPILIHPEPRSVLGGLAAAAYGHPSNRMTVVGITGT 140

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDV 160
            GKTTT  M+   L +  +    +G+    I                   +  A +   V
Sbjct: 141 SGKTTTTYMVEAGLRAGGRVVGLVGTIGIRIDGADIPSFLTTPEAPALQAMLAAMVERGV 200

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+  SH   +  +    +  +A  T ++  HL     +EE   AKA +F+     
Sbjct: 201 ETVVMEV-SSHALSLGRV-EGTQFAVAGFTNLSRDHLDFHPDMEEYFEAKAVLFDPHSLL 258

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +             + A    T+ + G+  +      +      Q +  V   G  
Sbjct: 259 RARTVVVCIDDDAGRATAARAGDAITVSALGQPASWRATDIRSPGVGAQEFTAVDPAGVQ 318

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             V     G +   N L+ L I+ ++    + A                    ++ G   
Sbjct: 319 HRVGIRLPGRYNVANCLVALAILDVVGVSPEQASLGFRDIRIPGRL-----ERIDCGQDF 373

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L    Y   P ++ + ++ L       + R   V G     GE        + E+ +   
Sbjct: 374 LALVDYAHKPGALHSVLTAL----LQPDHRLAVVFGA---GGERDPGKRAPMGEIAAEL- 425

Query: 401 ISHVWLS-----GFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              V ++     G    A++        A   +  V           +  +     DVV+
Sbjct: 426 ADLVVVTDDNPRGEDPAAIRRDILTGTVAAGGAAQVVEIGDRRAAIQYAVAWAGPDDVVL 485

Query: 449 V--KS 451
           V  K 
Sbjct: 486 VAGKG 490


>gi|71275126|ref|ZP_00651413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71900699|ref|ZP_00682822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|170731115|ref|YP_001776548.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xylella fastidiosa M12]
 gi|71163935|gb|EAO13650.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Dixon]
 gi|71729520|gb|EAO31628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|167965908|gb|ACA12918.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Xylella fastidiosa M12]
          Length = 491

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 143/456 (31%), Gaps = 41/456 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              ++G+ +DSR + P +AF A+ G    G  FI  A  +GA  ++        +     
Sbjct: 15  DVVISGLVMDSREVQPGDAFVAVAGFGAHGLCFIEDACARGAVAILFEPPAPQGVSVPDG 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS--------- 132
               V  +   L  +A           T++ +TG+ GKT+T ++L  A            
Sbjct: 75  A-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSATCG 133

Query: 133 ------IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                   +      +    + +   L ++  D    +  + +S     +     V   +
Sbjct: 134 TLGVGLYDQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVHYDV 192

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV T +   HL     +E   +AKA +F   +    +    D     LL         + 
Sbjct: 193 AVFTNLTRDHLDYHGDMEHYGAAKARLFAHQDVQAAVINVDDLFGLRLLHG-LAKGVRRV 251

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S     +AD   +      +    ++ +      V    +G     N+L   G++  L
Sbjct: 252 GVSVCGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVLYAL 311

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +      LS   P  GR    R     G   ++ +  +   A       VLS +S H
Sbjct: 312 DYALSEIAAVLSTLRPIHGR--MNRLGGQDGQPVVVVDYAHTPDA----LGQVLSSLSSH 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDA 417
             GR I V G     G            V++  N   V ++  +            +   
Sbjct: 366 VCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADILAG 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             R   V                    DVV++  K 
Sbjct: 422 FVRPNLVKVQRDRSAAIAAAVGIASAEDVVLIAGKG 457


>gi|172058185|ref|YP_001814645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
 gi|171990706|gb|ACB61628.1| UDP-N-acetylmuramyl-tripeptide synthetase [Exiguobacterium
           sibiricum 255-15]
          Length = 489

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 20/201 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + GI+ DSR +     +  ++G   DGH +   AV  GA  ++    +      + +
Sbjct: 22  NPSITGIATDSREVTKGCLYICVRGYTVDGHQYAEEAVANGAVAILAEEPIDG----VEV 77

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140
           PV  + D   A  K+A         K  +  ITG+ GKTTT ++      +  +    I 
Sbjct: 78  PVVLLQDTKHAAGKVADLFYDHPSHKLKVYGITGTNGKTTTTKLTYDLFRAAGQKAGMIS 137

Query: 141 ----GSYNNHIGVPLTLAR-------MPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIA 187
                     I  P T          +   V+ G+ +  L +S    +      V+ H A
Sbjct: 138 TIGAMIDGEMIDTPNTTPEAIILHRLLYQMVEQGVTDCVLEVSSHALMEGRVEGVKFHAA 197

Query: 188 VITTIAPAHLSNFSGIEEIAS 208
             T +   HL   + +EE A 
Sbjct: 198 AFTNLTHDHLDYHASMEEYAQ 218


>gi|297519212|ref|ZP_06937598.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 218

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              L+D+SYNAN  SM AA+ VL+++     G R+ V+GDM E+G  S++ H+ + E   
Sbjct: 91  NQLLLDDSYNANVGSMTAAVQVLAEMP----GYRVLVVGDMAELGAESEACHVQVGEAAK 146

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSNSC 455
              I  V   G    A+  A   S    +      L   ++S + +  V  ++VK S S 
Sbjct: 147 AAGIDRVLSVGKQSHAISTA---SGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSA 203

Query: 456 GFYRLINLLLE 466
               ++  L E
Sbjct: 204 AMEEVVRALQE 214


>gi|311741524|ref|ZP_07715348.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303694|gb|EFQ79773.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 511

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 83/482 (17%), Positives = 154/482 (31%), Gaps = 52/482 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS  +     F A+ G    G  F   A    A
Sbjct: 4   SLDTLAQLSGGRVIGDAT-VEVSACGLDSSRLPEGALFAALPGTRVHGAQF---ARDTKA 59

Query: 66  GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G V+ +   +  +       P+  V+D+   L  ++         + T+I +TG+ GKTT
Sbjct: 60  GAVLTDAAGLDLLTEAQETRPILVVEDIRAVLGPISAEIYGHPTRELTVIGVTGTSGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDFGIFE 166
           T  +L   L     +   IG+                     +    ARM  +    +  
Sbjct: 120 TSYLLEAGLLHAGHSVGLIGTTGTRINRTPVPTSLTTPEAPTLQELFARMKNEGVTHVV- 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     +E+   AKA++F G +      L 
Sbjct: 179 MEVSSHALELGRVRGTRFAVGGFTNLSQDHLDFHPTMEDYFQAKAKLFAGEQAAERAVLC 238

Query: 227 YDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD + E ++  AKS    + T+ + G +     +    +  +    + +   G +    
Sbjct: 239 IDDEWGERMRGVAKSAGHEVTTVDTQGAAATISARQTATEA-TGAQEVALDYDGANFTFR 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N  + LG+ + +  D    +  +                     F  + +
Sbjct: 298 LPLPGEFNIANACLALGMATAVGEDPAEFLSGVEKVAVPGR----MERIDRGQDFVAVVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   PA++ A +  L        GR   V+G     G    S    +    +       
Sbjct: 354 -YAHKPAAIAAVLDTLRGQLEGTTGRVGIVVGA----GGDRDSSKRPIMGAAAASRADLT 408

Query: 405 WLSGFHVLA-------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +  +              +DA P+   +    +       +      GD V+V  
Sbjct: 409 VVTDDNPRSEDPATIRAAVVEGARDAAPQG-DIREVGSRARAIDEVVDWAEPGDAVIVVG 467

Query: 450 KS 451
           K 
Sbjct: 468 KG 469


>gi|148257424|ref|YP_001242009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
 gi|146409597|gb|ABQ38103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium sp. BTAi1]
          Length = 486

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 138/472 (29%), Gaps = 40/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
              HDLL    G + G  P+     V+G+++DSR++ P + FFA+ G   DG  FI  A+
Sbjct: 1   MKLHDLL----GDAAGRDPEIAAVDVSGLAVDSRAVRPGDLFFALSGAKTDGARFIAAAI 56

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
                  +          +LS+P   + +   AL   A     R  ATI A+TG+ GKT+
Sbjct: 57  A---AGAIAVAGGSPPGTALSVPYVELPNPRLALAMAAARFYPRQPATIAAVTGTSGKTS 113

Query: 122 TKEMLTIALSSIKKT---------YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL-- 167
                      +  +          +   +    +  P       ++      G+  L  
Sbjct: 114 VAAFTRQIWQKLGHSSASIGTVGLVSDKRTVYGSLTTPDPIALHRQIDEITQDGVTHLAF 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G  ++    VR      T ++  H+     +    +AK  +F  L   G   +  
Sbjct: 174 EASSHGLDQYRLDGVRVSAGGFTNLSRDHMDYHPDLAHYLNAKLRLFRDLVPPGGAAVIS 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D         +       + + G   +      +    +   + +         +    
Sbjct: 234 ADHECSADVMAAAQARDLRLMTVGTHGDGAGAGIRLVAAAIDGFAQQLQLQHCGRMYTIR 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +    A  +   L    +                  EG   R           +  +  +
Sbjct: 294 LPLVGAFQVENALVAAGLAIGTGSDPQAVFEALETLEGAKGRLELVGEHNGAPIFIDYAH 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              A        L  + P+   + + V G     G    +    L   ++      V ++
Sbjct: 354 KPDA----LAKALQALRPYAARQLVVVFGA----GGDRDTGKRPLMGAIAAAEADRVIVT 405

Query: 408 GFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +          L  +                   L  GD +V+  K 
Sbjct: 406 DDNPRSEDPAAIRAAILAAAPGAREIGDRAEAIKVAIGELQPGDALVIAGKG 457


>gi|166710648|ref|ZP_02241855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 495

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 73/478 (15%), Positives = 145/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V+G+ +DSR++A  +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALPHDVQVSGLVMDSRTVALGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
              GA  V+           + +    V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  RANGATAVLFE-PPAPDGLPVPVDAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  AL+ +                      +   + +P       +  +    
Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  +    L    + S     +AD  +       + + +   L  +     
Sbjct: 235 NLDDGFGRTLFASLDPVLRAIGVSS---RAHADASVSAQALQLDHNGINFALNIRGEVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   D+  A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALDIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +        ++  N    
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                  +     D+V++  K 
Sbjct: 404 IVTDDNPRGEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIAMASASDIVLIAGKG 461


>gi|197105790|ref|YP_002131167.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
 gi|196479210|gb|ACG78738.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Phenylobacterium zucineum HLK1]
          Length = 483

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 84/460 (18%), Positives = 141/460 (30%), Gaps = 44/460 (9%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G+     + G++ DSR +     F A+ G   DG           A        +     
Sbjct: 11  GLPADPEITGVTADSRKVRAGTLFAALPGTKVDGAS-----FAAAAIQAGAAAVIADRDL 65

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            L +P     D   A    A     R     +A+TG+ GKT+         +   +T A 
Sbjct: 66  GLPVPTIVAKDPRRAYALAAAEFWGRQPQVCVAVTGTNGKTSVANFCRQMFARAGRTSAS 125

Query: 140 IGSYNNHIGVPLTLAR------------------MPVDVDFGIFE--LGMSHLGEIRFLT 179
           +G+    +  P                       +      G+    +  S  G  +   
Sbjct: 126 MGTLGVTVSRPDGTHEQLTPPGLTTPDAADVAEMLARIAGMGVSHFAMEASSHGVDQRRL 185

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             V+   A    +   HL     +E   +AK  +FE L   G   +   DS      A +
Sbjct: 186 DGVKLTAAGFLNLTQDHLDYHGTMEAYRAAKLRLFETLLPRGGTAVLNADSDAFPAFAAA 245

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             +  + +   G+   A  +L K +   E  W+ +  +G+S +V     G   A N L+ 
Sbjct: 246 AVIAGQWVMPVGE-TGATLKLAKRELLPEGQWLRIMAEGRSHDVRLPLAGGFQASNALVA 304

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            G+       ++     L       GR +R       G      E+Y     +     +V
Sbjct: 305 AGLCWAAGLTLEEVFAGLEALEGAPGRLQRVGQGARGG------EAYVDYAHTPDGLETV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLA 413
           L  + PH  GR I V G     G         L   ++        ++  +         
Sbjct: 359 LKALRPHVRGRLIVVFGA----GGDRDRGKRPLMGKVAGELADVAIVTDDNPRSEVPAAI 414

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + L                    + L DGD++VV  K 
Sbjct: 415 RAEVLAGCPGAAEIGDRREAIREAVAMLRDGDILVVAGKG 454


>gi|331266032|ref|YP_004325662.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
 gi|326682704|emb|CBZ00321.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus oralis
           Uo5]
          Length = 481

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 79/505 (15%), Positives = 155/505 (30%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +  +  FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSEVVFDSISYDSRKVKERTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYHILSQRYPTALLSTMNTTLDGETFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVQNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMKNSR---AVVINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         ++S +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLISVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ + +    +  V      +       +      
Sbjct: 388 GILLNQHPEIQVFLTADDPNYEDPMAIAEEISSYINHPVEKIADREEAIKAAMAITNQEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E++P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEDYP 471


>gi|239626579|ref|ZP_04669610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516725|gb|EEQ56591.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 515

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 138/482 (28%), Gaps = 47/482 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D L+ ++   I       V+ +  DSR  AP   F  + G   D H F+   ++ G  
Sbjct: 3   LRDWLKGLEYECIRGSLDTEVSEVVYDSRKAAPGAVFVCMAGTRVDSHRFVPDVLKAGVR 62

Query: 67  LVVVNTDMVA------------SIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIA 112
           ++V    +                    + V    D   AL  L  A      +K   I 
Sbjct: 63  VLVTERGIEEELKKAKEEGGLTEEDLSEVTVLQTGDGRHALALLSAARFGYPATKMVTIG 122

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTL-----ARMPV 158
           +TG+ GKTTT  M+   L +  K    IG+    IG          P +           
Sbjct: 123 VTGTKGKTTTTHMIKTILEAAGKKVGMIGTTGTVIGDKVTPTMNTTPESWQLHQAFAQMA 182

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D       + +S  G        +     + T I+P H+       + A         L 
Sbjct: 183 DSGCQYMIMEVSSQGIKMHRVDGITFDYGIFTNISPDHIGP-DEHADFAEYLYCKSRLLN 241

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N +DS FE +   +         +  +              +       Q   
Sbjct: 242 MCRIGLVNRNDSHFEDIIKDADCELYTYSVTEERGGLHGSGESGADFTASDVRYVSQPDF 301

Query: 279 KSMEVVHHGIGYHMA-------QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              E    G              N+   L  VS+ +                   G+   
Sbjct: 302 VGTEFDVKGRYEMDVRLGIPGLFNVDNALAAVSVCSFLGLKKESVSRALEHIRVNGRMEI 361

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +     L+D ++NA          +L+ +  +   R + V G      +  +    +
Sbjct: 362 VHTSARCTVLVDYAHNAVSMES-----LLTTLRQYHPKRLVVVFGCGGNRSKDRRYTMGE 416

Query: 392 LAEVLSLYNI-----SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
           +   L+  +I     S        +  ++ ++ +                +  S  + GD
Sbjct: 417 IGGRLADLSIVTADNSRYEKVEDIIADIRGSIEKTGGAFLEIPDRREAIEYSISHAMPGD 476

Query: 446 VV 447
           ++
Sbjct: 477 MI 478


>gi|148238930|ref|YP_001224317.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
 gi|166224792|sp|A5GJA5|MURE_SYNPW RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|147847469|emb|CAK23020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. WH 7803]
          Length = 499

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 88/483 (18%), Positives = 145/483 (30%), Gaps = 44/483 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M    T H LL+A+       V    V  ++ DSR +     F  + G   DG  F   A
Sbjct: 1   MTQ--TLHALLKAVGLPVPAGVANATVTALTCDSRCVGQGSLFIGLPGERVDGGSFWPAA 58

Query: 61  VQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKAT--IIAITGS 116
           +  GA  V++      A   +    V  V D +     +LA A   R      +I +TG+
Sbjct: 59  LASGAAAVLIGEQAAAAHPPAPGDSVLVVPDPVAFWAGELASAFWQRPSMRMELIGVTGT 118

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFG------------ 163
            GKTTT  ++     +  +  A  G+  N   G  LT        D              
Sbjct: 119 NGKTTTTHLIEHLSQACGRPAALFGTLVNRWPGHSLTATHTTAAADRLQAQLAEALEGGT 178

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---K 219
            +  + +S     +      R   AV T +   HL     +E    AKA +F       +
Sbjct: 179 QVAAMEVSSHALDQQRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKALLFASPYLVGE 238

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                +N DD +   L  +      +  +    +  AD  +   +  S      ++    
Sbjct: 239 GPRAVVNVDDPWGRQLADRL----GERAWRCSLAHEADLTMADLRMTSNGVDGALRTPLG 294

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G     N+L  +G +      +   + AL  F    GR    R  L     
Sbjct: 295 EGRFHSPLVGRFNLMNVLQAVGALLQQGLPLPLLLNALPSFRGVPGR--MERIVLTGSAA 352

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                       +     + L    P   G+ I V G     G             ++  
Sbjct: 353 EDHPAVLVDYAHTPDGLRNALEACRPFVRGQLICVFG----CGGDRDRGKRPQMAAIAAA 408

Query: 400 NISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++         G  +  +   LP                   +    GD+V++ 
Sbjct: 409 LADQVVVTSDNPRTEDPGQILDDVVAGLPADAERQVEVDRAKAIALAIAQARCGDLVLIA 468

Query: 450 -KS 451
            K 
Sbjct: 469 GKG 471


>gi|294498916|ref|YP_003562616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
 gi|294348853|gb|ADE69182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bacillus megaterium QM B1551]
          Length = 499

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 73/462 (15%), Positives = 147/462 (31%), Gaps = 34/462 (7%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---V 70
           +    I       +N ++  S+ +     FF+IKG + DGH +I  A+ +GA  V    +
Sbjct: 11  LSIKHIFGPASQTINHLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAITRGAVAVFGTSI 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEM--- 125
               + S          VDDV   +   +      +   I  I +TG+ GKTT       
Sbjct: 71  EELRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRS 130

Query: 126 --------LTIALSSIKKTYACIGSYNNHIGVPLTLARMP--------VDVDFGIFELGM 169
                        ++   +      Y            +            +  + E+  
Sbjct: 131 LLTLLKLPTGSIGTTGIWSSKKKLVYKKSTPTTPESVDLHKIFYDLYTRGDEAAVMEV-- 188

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +   +     +   +A+ T ++  HL      E     K ++F+  +    +    D 
Sbjct: 189 SSIAIDQQRVEDIYFDVAIHTNLSEEHLEYHKTFEHYKKCKMKLFQ--QAKHAVINIDDQ 246

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
              + L       G K  YS   +  A  Q +        S+ ++  +G+S +V     G
Sbjct: 247 DMGKDLSRLF--EGPKVTYSLLNNAEATLQAKNITVKEGGSFFDLLYKGQSYKVAVPVYG 304

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNA 348
            +   N+L  +G        ++  I  L      EGR +      NQ        +    
Sbjct: 305 DYNIANVLAAIGTALHFEYHIEDIISVLPQLESPEGRFQVVEGPNNQKVILDYAHTPVAL 364

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLS 407
                +      +Q+     G  I     M +M  + +    ++   +    +     + 
Sbjct: 365 TRLVEEVKKMEYNQLIVMIAGIGIRDFNKMPKMARVIEGKADEIIVTVDHPGHHDPNVIV 424

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    +  P + ++H + T     L   S     D++++
Sbjct: 425 DQVMTGFSN--PSASNIHRAPTRTEGVLKSLSLGKPNDIILL 464


>gi|88856419|ref|ZP_01131077.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
 gi|88814286|gb|EAR24150.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [marine actinobacterium PHSC20C1]
          Length = 505

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 141/447 (31%), Gaps = 39/447 (8%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +   + F AI         +I  A+ +GA  V+V+      +  L   VF + ++ 
Sbjct: 41  DSREVGTDDVFVAIGTSASSALPYIDAALAQGAVAVLVDAKAAEGV-ELDKQVFAIANLH 99

Query: 93  GALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------------Y 137
             + ++A A      +  ++I ITG+ GKT+T  +LT A   +  T              
Sbjct: 100 EVIGRMADAFVGHPSASMSMIGITGTNGKTSTAHLLTQAWQQLGMTSATIGTLGAGITGE 159

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIF--ELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
             I        V      +      G+    + +S     +     V  +I   T     
Sbjct: 160 RRINMGMTTPQVTAVHQFLDDFYRAGVRNVAMEVSSHALEQRRVDGVAFNIVAFTNFTRD 219

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +EE A+ KA+IF     T  +    D +                  +      
Sbjct: 220 HLDYHGTMEEYAAQKAKIFTLPGVTTALLNLDDAAAENHFHNTLPEGMRGIGMTSRGHSE 279

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A  +    +  +E    ++ ++G+S  VV   IG     N+L    ++     +     +
Sbjct: 280 ASVRADHVQLTTEGLEFDLVIEGESHHVVSGLIGRFNVDNLLTCATVLWAQGIEPQAIAE 339

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           AL+   P  GR  R R         +          +     +V   ++   E     ++
Sbjct: 340 ALAPLEPVLGRMTRIRENDKLPLVVVD---------AGHTPDAVRQAVTALRESGHTRIV 390

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDALPRSIHVHY 426
                 G+       ++A  +       + ++   V           ++        V  
Sbjct: 391 TVFGATGDRDPGKRPEMAR-IVEEGSDLIVVTDDDVHNEDGDQIVAHIRAGFEHPERVIE 449

Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451
                    +   +    DVV++  K 
Sbjct: 450 IRDRASAIAYAIDAANPDDVVLLQGKG 476


>gi|88809251|ref|ZP_01124760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
 gi|88787193|gb|EAR18351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 7805]
          Length = 499

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 130/479 (27%), Gaps = 45/479 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LL+A        +    V  ++ DSR +     F  + G   DG  F   A+  GA 
Sbjct: 2   LHALLKAAGLPVPSGLANATVTSLTCDSRCVGKGSLFIGLPGERVDGGSFWPQALAAGAA 61

Query: 67  LVVV-NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            V++      +   +    V  + D +     +LA A   +    +  I      T  K 
Sbjct: 62  AVLIGEQAAASHPPAFGDAVLVLPDPVSVWAGELASAFWQQPSTRLGLIGV--TGTNGKT 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------------ 166
             T  +  + +      +    +        +       + +                  
Sbjct: 120 TTTHLIEHLSQACGQPAALFGTLVNRWPGHSLTATHTTSVADRLQAQLAEALEAGTQMAA 179

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE---KTGTI 223
           + +S     +      R   AV T +   HL     +E    AK+ +F       +    
Sbjct: 180 MEVSSHALDQHRVAGCRFSGAVFTNLTQDHLDYHPSMEAYFEAKSRLFASPYLVGEGPRA 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD +   L  +      +  +S     +AD  +   +  S      +         
Sbjct: 240 VVNTDDPWGRQLADRL----GERCWSSSLETHADLTMGDLRMTSAGVDGLLVTPLGEGRF 295

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N++  +G +      +   + ++  F    GR +R     +        
Sbjct: 296 HSPLVGRFNLMNLMQAVGALLQQGLPLGLLLASIPSFRGVPGRMERVVVKGSAMIDEHPS 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
              +          + L    P  +GR + + G     G             ++      
Sbjct: 356 VIVDYAHTP-DGLRNALLASRPFTKGRLVCLFG----CGGDRDRGKRPQMASIAASLADR 410

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   LP                         D++++  K 
Sbjct: 411 VVITSDNPRTENPNQILEDIVVGLPTGTEFSVDVNRSTAIANAIREARPDDLLLIAGKG 469


>gi|284989091|ref|YP_003407645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284062336|gb|ADB73274.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 508

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 146/470 (31%), Gaps = 53/470 (11%)

Query: 11  LQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
            + + G  +   G      V G+  DSR + P   F  ++G   DGH  +  A   GA  
Sbjct: 15  ARTVPGSPVTRAGGADDLTVRGLVTDSRRVVPGSLFACVRGATSDGHRHVPAAAAAGAMA 74

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEM 125
           ++V+  +       S+P   V  V   L  L             ++ +TGS GKTTT  +
Sbjct: 75  LLVDRPV-----ETSLPQLCVPSVRAQLGPLGALLAGDPARALGLVGVTGSNGKTTTSAL 129

Query: 126 LTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGM 169
           +   L +       +G+    +                   L  A +       + E   
Sbjct: 130 VRGVLEAAGTCTGVVGTLGAQVAGLSRETALTTPEAPELHELLGAMVEAGARRAVVE--A 187

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S +         +   +AV T     HL +   +E+  ++KA +FE   +T    +  DD
Sbjct: 188 SSIALDMGRMDGLAFEVAVFTGFEEDHLDHHGTVEQYWASKARLFE-PGRTAAGVVVTDD 246

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            +   L  +        +   G   +AD ++  W+  +  + + +        V    +G
Sbjct: 247 PWGRRLADQ----AAVRVTRVGSGADADVRVLGWRTGAAGTEVLLGDDAGGHRVRSPLVG 302

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+        +L    D     L+   P  GR      +           +  A 
Sbjct: 303 RVHVTNLAAAWATGRVLGVPPDRIAAGLAAVAPPRGRNTVLGGSGRPVVVVDYAHTPRAL 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
            A++     +         GR   V+G     G   +     L E         VWL+  
Sbjct: 363 AAAVDTVRDLT-----GPGGRVHLVVGA---RGRRDRYKRQGLGESARAA--DCVWLTNE 412

Query: 408 ---GFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G    A++  L          V               +    DVV+V
Sbjct: 413 GSHGEDPAAIRAELRLGLLGTPAAVRTVPDRREAITAAVRAAGPADVVLV 462


>gi|300933359|ref|ZP_07148615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium resistens DSM 45100]
          Length = 552

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 73/520 (14%), Positives = 140/520 (26%), Gaps = 83/520 (15%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   L +   G          V   +I S  +     F A+ G    G  F       
Sbjct: 1   MTTLQALAELTGGRISSTDAHVEVTSAAIGSTDVRAGGLFCAVPGLKTHGAQFA------ 54

Query: 64  G---AGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
           G   A  V+ +      + +  +  P   VDDV   +  +A           ++I ITG+
Sbjct: 55  GTSQATAVLTDPAGEDILEAQGVELPRLIVDDVREWMGPVAAEIYGHPSRRLSVIGITGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-------GIFE--- 166
            GKTTT  ++  AL           +     G P+       +           + E   
Sbjct: 115 SGKTTTSYLVEKALLPNHSVGIIGTTGTRINGRPVPTKLTTPEAPTMQSLLAEMVDEGVT 174

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTG 221
              + +S         H +   +A  T ++  HL     +E+   A AK    +  EK  
Sbjct: 175 HVVMEVSSHALELGRVHGIDFDVAAFTNLSQDHLDFHPTMEDYFQAKAKLFREQAGEKHD 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTI-------------YSFGKSKNAD-----FQLRKW 263
                      +    +   L  +                + G   + D           
Sbjct: 235 VKLPAAVICVDDEWGQRMAQLASQRQGDAGGAVAPVLAVRTAGTHDSTDAAVAGAYENIP 294

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL-----------GIVSILTADVDT 312
               E   +    + +              + +  ++            +     A +  
Sbjct: 295 TWVLESVQVTPSGRQEIRFHTGATHAPDAREPLEYSIGLAGSFNVANSAVALACVAQLGE 354

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++A +          R +       F  + + Y   P ++ A +  L+   P  EGR  
Sbjct: 355 DVEAAAQHLRDVQVPGRMQAVDEGQDFLAMVD-YAHKPGAVAAVVRTLADYLPTKEGRIG 413

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYS 427
            V+G     G              +      V+++  +        +++A+       ++
Sbjct: 414 IVIGA----GGNRDQDKRPKMGYEAALVADAVFVTDDNPRDEDPAPIREAIYSGAEAGFA 469

Query: 428 E--------------TMDGLFLFIQSSLVDGDVVVV--KS 451
           E                             GD +VV  K 
Sbjct: 470 ERGVEKKTVTLANIADRAEAITAAVQWAQPGDAIVVAGKG 509


>gi|171462982|ref|YP_001797095.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192520|gb|ACB43481.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 516

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 134/434 (30%), Gaps = 42/434 (9%)

Query: 30  ISIDSRSIAPQEAFFAIK-GPHY---DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +  DSR I   + FFA   G      DG  FI  A++ GA  VV +   + S  +     
Sbjct: 26  VCADSRQIQSGDIFFAYPVGHGNALRDGRQFINAALENGAAAVVFDLKDMDSQLTDHPQC 85

Query: 86  FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---- 139
           F V ++     +L             II +TG+ GKT+  + L  AL +     A     
Sbjct: 86  FAVKNLAAQAGQLCSQWYGHPSKELNIIGVTGTNGKTSITQWLAQALDASNHRTAVLGTL 145

Query: 140 --------IGSYNNHIGVPLTLARMP--VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                   + +       P    ++    +       + +S     +          A  
Sbjct: 146 GTGFPGALVQTGYTTPDAPKLQTQLAELRNAGAKQVAMEVSSHALHQERIAGTDIQCAAF 205

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD------------DSFFELLKA 237
           T +   HL     + + A AKA++F+       +    D                ++   
Sbjct: 206 TNLTQDHLDYHGSMGDYAEAKAKLFQQAGLKHAVINLDDAFGRELAMNLLAKDGMKVWAY 265

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                  +    FG      +        +    + V  +  S ++    +G     N L
Sbjct: 266 ALSPSAFEGFEKFGDRLQRIYAKETTLSGAGYDSIFVYGKVGSAQLHIPLLGEFNVSNAL 325

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNANPASMKAA 356
                +       + A + +S  +P  GR +  R    Q   +L+    Y   P +++  
Sbjct: 326 AVWATLLSQGMRCEVAAQKVSQLNPVLGRMELIRFGKPQKAGSLLAVVDYAHTPDALEKT 385

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHV 411
           +  L  ++    G+   V G     G    +    L   ++  N  H+ ++         
Sbjct: 386 LQALRPVADQRGGKIWCVFG----CGGDRDAGKRALMGAVAERNADHILITSDNPRSEDP 441

Query: 412 LALKDALPRSIHVH 425
            A+   +   I   
Sbjct: 442 QAIMQMIRGGIQAE 455


>gi|104783458|ref|YP_609956.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
 gi|95112445|emb|CAK17172.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas entomophila L48]
          Length = 487

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 70/465 (15%), Positives = 149/465 (32%), Gaps = 61/465 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----------QKGAGLVVVNTD 73
              +  +++DSR++ P + F A+ G   DG   I  A+          ++GA +      
Sbjct: 15  DPLIRELTLDSRAVRPGDLFLAVPGAKVDGRAHIADALARGAAAVAYEEQGASV------ 68

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
               +    +P+  V  ++G L+++A            ++ +TG+ GKT+  ++L  AL 
Sbjct: 69  ----LPITEVPLIPVKGLIGQLSQIAGRFYGEPSRQLELVGVTGTNGKTSVTQLLAQALD 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRF 177
           ++ +    IG+        L   R+       +                + +S     + 
Sbjct: 125 ALGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQATLNDLKKGGAKAVAMEVSSHALEQG 184

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   IAV+T ++  HL     +     A               +N DD F   L  
Sbjct: 185 RVAALDFDIAVMTNLSRDHLDYHGSM-GAYEAAKAKLFAWSSLRARVVNLDDDFGRRLAE 243

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + +     +   A    ++     +     +        +    +G     NML
Sbjct: 244 AHGQSRLISY--SLQDPAATLFCKQAAFNDDGVRAVIVTPQGEHALRSRLLGRFNLSNML 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  +  L   +D  +K     H   GR    R         ++D ++  +        
Sbjct: 302 AAVATLLALDYPLDEILKVTPQLHGPIGR--MQRLGGGDKPLVVVDYAHTPDALE----- 354

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
            VL  + PH  G+ + + G     G    S    L   ++      V ++  +       
Sbjct: 355 KVLEALRPHAHGKLLCLFG----CGGDRDSGKRPLMAAVAERLADRVLVTDDNPRTEDPL 410

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                ++    +   + +          + ++    DV+V+  K 
Sbjct: 411 RIFDDIRPGFAKPADIEFVAGRGEAIAHLIATAAADDVIVLAGKG 455


>gi|239907968|ref|YP_002954709.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
 gi|239797834|dbj|BAH76823.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Desulfovibrio magneticus RS-1]
          Length = 488

 Score =   99 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 122/450 (27%), Gaps = 41/450 (9%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           ++ DSR       F A+ G   DG  ++  A++KG    VV           +  +  VD
Sbjct: 25  VAADSRRATSGGVFVAMAGSRDDGARYVADALEKG-VAFVVAAPGHDLPAGTTARLVAVD 83

Query: 90  DVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           D   AL  LA A          ++A+TG+ GKTT   ++     +   T   +G+     
Sbjct: 84  DPQAALGALAAARFGTETMAMPVVAVTGTNGKTTVSYLIERLAQAAGHTVGVLGTVAYRW 143

Query: 148 GVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIA 193
              +  A +       I E              +  S     +     +    A  T + 
Sbjct: 144 PGVVHDATLTTPDCLAIHENLAAMARSGCTLAVMEASSHALDQDRLAGLSFAAAAFTNLT 203

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGK 252
             HL     +     AKA++F          +   D  +   L  +        +     
Sbjct: 204 QDHLDYHKDMAVYFEAKAKLFRRYLARAETAVFNFDDAWGLKLLHEFPQAIGYGLTVPPT 263

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                          E   +       S  V     G H AQN+L   G+   L    +T
Sbjct: 264 GFGRLLSGHVQHHGREGQDILAAYGDDSYAVATPLPGRHNAQNVLAACGVALALGWPAET 323

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                                 N     +  +  +   A      +VLS       GR  
Sbjct: 324 FAALADCHGAPGRL----ERIPNPSGRAVFVDYAHTPDA----LENVLSAAREFTAGRLF 375

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIH 423
            V G     G         L             L+  +            +K  L ++  
Sbjct: 376 VVFG----CGGNRDRAKRPLMGAAVARLADVAVLTSDNPRHEDPLAIIEDVKPGLKKARR 431

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          S +   DV+V+  K 
Sbjct: 432 AILEPDRRRAIELALSEMRPEDVLVIAGKG 461


>gi|328881792|emb|CCA55031.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L,L-2,6-diaminopimelate
           ligase [Streptomyces venezuelae ATCC 10712]
          Length = 565

 Score =   99 bits (247), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 16/218 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            ++GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 56  LGDLAAQLGVDVPDAPRPTEISGITHDSRAVRPGDVYAALPGARAHGADFVAQAAGLGAA 115

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKE 124
            ++ +        +  +PV  V++  G + +LA     R  A +  I ITG+ GKTTT  
Sbjct: 116 AILTDPTGAERAAATGLPVLVVENPRGRMGELAAEIYGRPGADLLQIGITGTSGKTTTAY 175

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L         +G+    IG     +    P   D       M   G       + 
Sbjct: 176 LVEGGLRGTGHHTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVDAVAMEVS 235

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIAS 208
                          +AV   ++P H+   S +E+   
Sbjct: 236 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHSDMEDYFQ 273


>gi|253997374|ref|YP_003049438.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
 gi|253984053|gb|ACT48911.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylotenera mobilis
           JLW8]
          Length = 487

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 160/457 (35%), Gaps = 43/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ DSR + P   F A  G H DG  +I  AV  GA  V+ ++       ++ +
Sbjct: 8   NQTFTAVTADSRQVVPGALFLAYPGVHSDGRKYIAQAVAAGASAVLWDSQDFVWNAAIKV 67

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
              GV ++   + ++A         K  +I +TG+ GKT+  + +  A+ ++ K  A IG
Sbjct: 68  SNLGVRELKSQVAQIAAEFYQYPSRKLDVIGVTGTNGKTSVSQWIAQAMQALGKKTAVIG 127

Query: 142 SY-------------NNHIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVR 183
           +                    P  +    +  D+         + +S  G  +   + + 
Sbjct: 128 TIGSGFADANGNGLAETSNTTPDAILLQKMLADYANQGAAAVVMEVSSHGLDQGRVNAIE 187

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T +   HL     ++  ASAK ++F+      T  +N DD F + +        
Sbjct: 188 FDFAVFTNLTRDHLDYHVTMDAYASAKQKLFD-WPSLRTAIVNADDDFGKKMAESLRVNN 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +       + D +  +         M+V     +  +    +G   A N+L  L  +
Sbjct: 247 KSLLTY--GLLHGDVRADQLTLGPSGISMQVSTPQGAAVLNASVLGRFNAYNLLAVLATL 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                 ++ AI A++   P  GR    +   N     ++D ++  +        +VL  +
Sbjct: 305 LARQVPLNEAIAAIAQIKPVAGR--MQQFGGNDKPLVVVDYAHTPDALE-----NVLVSL 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL 418
               +G+ + V G     G    +    L   ++     HV ++       +   + + +
Sbjct: 358 REQTQGKLVCVFG----CGGDRDAGKRPLMGAIAEKYAHHVVVTSDNPRSENPAEIIEHV 413

Query: 419 PRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              + V    +                 DVV++  K 
Sbjct: 414 VNGMTVLPSVAPDRAIAIQQAIKFANKDDVVLLAGKG 450


>gi|332288557|ref|YP_004419409.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
 gi|330431453|gb|AEC16512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Gallibacterium anatis UMN179]
          Length = 488

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 147/459 (32%), Gaps = 42/459 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS----IG 79
           +  +N + +DSR++   + F  + G   DG  F   AV  GA +V++ ++          
Sbjct: 14  EQPLNHLQLDSRAVQAGDVFIGLIGHQLDGRKFAAQAVAAGAAVVILESEDPQDQARIEW 73

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSI---- 133
             +IP   V  +   L+ LA A        +  + +TG+ GKTT   +LT     +    
Sbjct: 74  HDNIPFIYVYRLAHQLSSLAGAFYHHPSQKVTLVGVTGTNGKTTVANLLTQWTHLLGKKS 133

Query: 134 -------KKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                     Y  + +  N  G  + + R     V        + +S  G ++     ++
Sbjct: 134 AVMGTIGNGFYQQVKAATNTTGSAVEIQRNLAEFVAHQADFVAMEVSSHGLVQHRVDALQ 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV T ++  HL     ++  A AK  +F G      I    D+   + L+    A+ 
Sbjct: 194 FAAAVFTNLSRDHLDYHHTMQAYADAKKMLFTGFNVPNRIINADDEVGKQWLQQMDDAIE 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +     F        +        +   + V             IG     N+L+    +
Sbjct: 254 VSLQSDFQPQHKRWLKATNLVYHQQGVTITVDSSWGKAVFHSQLIGEFNVCNLLLATATL 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +     +++      GR + +              + +A   +++AA       
Sbjct: 314 LSLGYSLSCLSDSVNQLQGVCGRMECFTAEGRPTAIVDYAHTPDALDKALRAA------- 366

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
             H +G+   V G     G             ++     H+ ++  +            +
Sbjct: 367 RLHCDGQLWCVFG----CGGDRDKGKRPQMAKIAEQLADHIVITDDNPRTEDAAAIINDI 422

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              L    +           ++  +     DV++V  K 
Sbjct: 423 VQGLDFPNNATIIHQRKQALVYAFACANANDVILVAGKG 461


>gi|254524419|ref|ZP_05136474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
 gi|219722010|gb|EED40535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stenotrophomonas sp. SKA14]
          Length = 498

 Score = 99.6 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 78/472 (16%), Positives = 141/472 (29%), Gaps = 43/472 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              LL  +    +G  P   + G+ +DSR++ P  AF AI G    G  F+  A   GA 
Sbjct: 3   LSQLLPDV--ALVGHDP--VLTGLVLDSRAVRPGNAFVAIAGFGAHGLGFVEQARAAGAS 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            ++      A + + +     V  +   +  +A            ++ +TG+ GKT+T +
Sbjct: 59  AILFEPPAPAELPAPAD-AIAVPGLRARMGAMADQFHGAPSRAMAMVGVTGTNGKTSTVQ 117

Query: 125 MLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPV-------DVDFGIFELGMS 170
           +L  A   +      I              G    L            D       + +S
Sbjct: 118 LLAQAWHLLGTPSGSIGTLGAGLYGAVEPTGFTTPLVLQMHALLAQLRDAGARAVAMEVS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                +     V   +AV T +   HL     +     A               +N DD+
Sbjct: 178 SHALDQGRVDAVHYDVAVFTNLTRDHLDYHGDM-ASYGAAKARLFHRPGLKAAVVNLDDA 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F   L A   A       S   + +A  +    +        E+ + G+   V    +G 
Sbjct: 237 FGRQLFAGLPAGVQPIGLSSRGATDASVRAEALQLDGRGIAFELVIDGQRAAVQSPLLGR 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L   G +      +    + LS   P  GR    R     G  T++ +  +   
Sbjct: 297 FNVDNLLAVAGTLHAQGQPLPRIAEVLSALQPIRGRMN--RLGGEDGLPTVVVDYAHTPD 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A        L  +  H  G    V G     G    +        ++    + V ++  +
Sbjct: 355 A----LKQALDSLHGHLHGALFCVFG----CGGERDTGKRPQMAAIAERLANQVIVTDDN 406

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +      +  V    +              GD++++  K 
Sbjct: 407 PRGEDGDVIVADILAGFQNADAVTVQRSRARAIGLAVKRAGAGDIILIAGKG 458


>gi|254796835|ref|YP_003081672.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
 gi|254590075|gb|ACT69437.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Neorickettsia risticii str. Illinois]
          Length = 326

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 9/259 (3%)

Query: 4   LWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           L T   +   ++   I           +  S+D   +   E F      ++D H  I  A
Sbjct: 2   LLTADLIRSILKAELICEYQAKIDISRSKFSMDYEKVGKGEIFVTADAKNHDTHHLIETA 61

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
              GA  ++   D   +   + IP+  VDD L A+ KLA       +  +I ITGS GKT
Sbjct: 62  YLNGALAIITKKDT--ACPKVPIPIIKVDDPLRAMEKLAAILIRNYQPIVIGITGSSGKT 119

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            TK ++   L +  KT        +  G  L +        F + E+  +H G I     
Sbjct: 120 LTKNLIVTLLKNYGKTCYNEDGAGDFTGFTLGILNADFPCKFLVLEVDTTHSGNIDLFNQ 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P + VIT I      +    E     KA+IF+     G + +   D+ +  L  +  
Sbjct: 180 ITLPKVGVITDIRFHPARSIDLRESTVREKAKIFQN----GCVAVLNFDTPYTELLLQEA 235

Query: 241 ALGIKTIYSFGKSKNADFQ 259
                TI SFG ++N D +
Sbjct: 236 RKNKATIISFGGNENCDVR 254


>gi|297621520|ref|YP_003709657.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
 gi|297376821|gb|ADI38651.1| putative UDP-N-acetylmuramate--L-alanine ligase [Waddlia
           chondrophila WSU 86-1044]
          Length = 532

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 82/366 (22%), Positives = 134/366 (36%), Gaps = 17/366 (4%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--V 149
              L K A     +    +I ITGS GKT+TK+ L   L     +        N      
Sbjct: 162 QKILIKGAKQKLKKIDPYVIGITGSYGKTSTKDALGQLLQITLGSTFWPSKGINTDMGIT 221

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                R+     + + E+     G IR L  L  PH  +IT I  AHL  F   + I  A
Sbjct: 222 RSIRERLEPLTKYAVIEMAAYGTGSIRRLCGLTPPHAGIITGIGLAHLDRFGDQKTIYQA 281

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+E+ + + + G +  N D+     + A+               ++ D  +   +   E 
Sbjct: 282 KSELAQAIPEEGILICNGDNPGTRQISAEFKKQTTLLYGLDNSKRDLDCWITPLELTKEG 341

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   ++ +GKS E +    G     N      +   L A  D A  ALS   P   R + 
Sbjct: 342 TRFRIEWEGKSFEGITSLYGNTSLSNCAGAFAMACALGAQPDFAAAALSTLIPVNNRLQI 401

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R        T I ++YN+NP    +A+ VL Q+       RI +   M E+ E + + H
Sbjct: 402 SRDEER----TYIHDAYNSNPEGFLSALHVLHQMPARK---RILMTPGMIELAEQNLNMH 454

Query: 390 IDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             +    +        L G           +     +S  +  +E     F  + + +  
Sbjct: 455 HKVGYQAAKV-CDLAILVGKTNRESLSLGLIAGGFTQS-QIITAEHRSEAFEKLAAVMEK 512

Query: 444 GDVVVV 449
           GD V++
Sbjct: 513 GDAVLI 518


>gi|26988066|ref|NP_743491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
 gi|38258005|sp|Q88N81|MURE_PSEPK RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24982790|gb|AAN66955.1|AE016324_5 UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas putida KT2440]
          Length = 496

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 143/458 (31%), Gaps = 39/458 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSRS+ P + F A+ G   DG + I  A+ +GA  V         +    +
Sbjct: 16  DPLIRELTLDSRSVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +A            ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R+       +                + +S     +     +   IA
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGARAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E    A               +N DD F   L A          
Sbjct: 196 VMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAADFARRPSVDH 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQNMLMTLGIVS 304
                   +         C E  + +  ++   +                N+   L  V+
Sbjct: 255 IETRLLSYSLESPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRFNLSNMLAAVA 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A      + L V    +G   R +         ++ +  +   A       VL  + 
Sbjct: 315 TLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           PH  G+ + + G     G         L   ++      V ++  +            ++
Sbjct: 371 PHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPSRIFDDIR 426

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               R   V +          + ++    DV+V+  K 
Sbjct: 427 PGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|259507672|ref|ZP_05750572.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|259164719|gb|EEW49273.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 509

 Score = 99.6 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 141/484 (29%), Gaps = 50/484 (10%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63
           T  +L + I G           ++ I +DS ++A +   F A+ G    G +F       
Sbjct: 4   TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 63

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           GA  V+ + D    +       P   VDDV   L   + +          +I +TG+ GK
Sbjct: 64  GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177
           TTT  +L   L         IG+      G P+       +          M   G    
Sbjct: 124 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 183

Query: 178 LTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +               ++A  T ++  HL     +EE   AKA  F           
Sbjct: 184 VMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQ 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                     +    A   +T+ + GK  +    L   K+  EQS+         + V  
Sbjct: 244 VVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTL 303

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N  + L        D     + ++        G+  R    Q F  ++D +
Sbjct: 304 ALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAVVDYA 360

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +     +      VL  +    +GR   V+G     G    +        LS      V 
Sbjct: 361 HKPAAVAA-----VLDTLRTQIDGRLGVVIGA----GGDRDATKRAPMGELSARRADLVI 411

Query: 406 LSGFH----------------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  +                           + V            +      GD +VV
Sbjct: 412 VTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVV 471

Query: 450 --KS 451
             K 
Sbjct: 472 AGKG 475


>gi|313500442|gb|ADR61808.1| MurE [Pseudomonas putida BIRD-1]
          Length = 496

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 72/458 (15%), Positives = 142/458 (31%), Gaps = 39/458 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG + I  A+ +GA  V         +     
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGANVLPLTDA 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +A            ++ +TG+ GKT+  +++  AL  + +    IG
Sbjct: 76  PLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALDLLGQRCGLIG 135

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R+       +                + +S     +     +   IA
Sbjct: 136 TLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQGRVAALEFDIA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V+T ++  HL     +E    A               +N DD F   L A          
Sbjct: 196 VMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAADFARRPSVDH 254

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQNMLMTLGIVS 304
                   +         C E  + +  ++   +                N+   L  V+
Sbjct: 255 IETRLLSYSLESPEASLFCREAVFSDDGVRATIVTAQGERILRSQLLGRFNLSNMLAAVA 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A      + L V    +G   R +         ++ +  +   A       VL  + 
Sbjct: 315 TLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA----LEKVLEALR 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALK 415
           PH  G+ + + G     G         L   ++      V ++  +            ++
Sbjct: 371 PHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTEDPLRIFDDIR 426

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               R   V Y          + ++    DV+V+  K 
Sbjct: 427 PGFTRPDDVEYVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|317501923|ref|ZP_07960107.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316896603|gb|EFV18690.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 488

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A      + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   L  +      IG+    IG                       +    D  + E
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G +   T  +   I + T +   H+              +              
Sbjct: 178 V--SSQGLMLHRTAEIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +             + +FG S  AD +       S+  ++ V            
Sbjct: 231 GIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I      ++  +L  +++       + K          +G+     ++  F  +ID ++
Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA      +  S+L+ +  +   R + V G     G  S+    ++ EV        +  
Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402

Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|320527377|ref|ZP_08028559.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
 gi|320132234|gb|EFW24782.1| Mur ligase family, glutamate ligase domain protein [Solobacterium
           moorei F0204]
          Length = 523

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 141/350 (40%), Gaps = 20/350 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIF 165
               I ITGS GKT+TK ++   +     T     SYN  +G+ +T+  +        + 
Sbjct: 177 DLIKIGITGSYGKTSTKNVMQAMIGEQFNTLMTPASYNTPMGITITIRTLLKPIHKVFVC 236

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G  H+GEI  L   V+P I V+T+I P HL+ F   E I   K ++ E L K G   L
Sbjct: 237 EMGADHVGEITNLMKFVQPSIGVVTSIGPQHLATFGSQENIIKEKMQMMELLPKDGLGVL 296

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           NYD+ F    + K     +    S+G KS++ D+           S   V  + + + + 
Sbjct: 297 NYDNDFIRNYRLK----NLVKTVSYGVKSRDVDYYADDITYTRMGSSFTVVHRDEHVRIE 352

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  + +   L     T  +A       E R +          +  ID+
Sbjct: 353 TKLLGELNILNILSAICVARHLNVPWPTIQRAAKTMKQVEHRLE----LKTINGYRFIDD 408

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N+NP     A+ VLS +       R  V   M ++G +    + +    +       V
Sbjct: 409 AFNSNPVGSAMALEVLSMMP----NTRYVVTPGMIDLGAIQDDANKEFGRKM-KGKADEV 463

Query: 405 WLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L G     ++ + L         V   +T+   F  I   ++  D +++
Sbjct: 464 ILVGEIQTKSIYEGLQEVGFDMNRVIVVKTVKEAFDHIYRHVLPSDTILL 513


>gi|319786248|ref|YP_004145723.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464760|gb|ADV26492.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 495

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 87/455 (19%), Positives = 148/455 (32%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+G+ +DSR + P +AF AI G    G  F   A Q GA  ++      A   + + 
Sbjct: 19  DIAVSGLVMDSREVKPGDAFVAIAGFGTHGLAFAEQARQAGAVAILFEPPAPAEYPAPAD 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
               V  +   L  +A           T++ +TG+ GKT+T ++L  A          IG
Sbjct: 79  -AIAVPGLRSRLGAMADLFHGHPSHAMTMVGVTGTNGKTSTVQLLAQAWHLRGLRGGSIG 137

Query: 142 SYNNHIG-----------VPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIA 187
           +    +            + L++  +   +     E   + +S     +     V   +A
Sbjct: 138 TLGAGLHGEVRPTGFTTPLVLSMHALLGGLRDAGAEAVAMEVSSHALDQGRVDGVHYDVA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +     AKA +F   E   +  LN DD F  +L  +         
Sbjct: 198 VFTNLTRDHLDYHGDMASYGEAKARLFLR-EGLRSAVLNLDDEFGRVLAGRLAEGVRLVG 256

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S    + A  Q R  +  +     E+    +S  V    +G     N+L   G++  L 
Sbjct: 257 VSSRGQEGAALQARGLQFDARGIAFELSDGVESHPVRSPLLGRFNVDNLLAVGGVLHALG 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V      LS   P  GR    R   +     ++ +  +   A        L+ +  H 
Sbjct: 317 DSVACVAAILSRLQPVAGRMN--RLGGDGERPLVVVDYAHTPDA----LEQALASLRAHA 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRS- 421
             R   V G     G         +   ++  +   V ++     G    A+   +    
Sbjct: 371 GARLTCVFG----CGGERDRGKRPMMARIAEQHADRVVVTDDNPRGEDGDAIVAGIMAGF 426

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                V              +     DVV+V  K 
Sbjct: 427 AAPEAVQVERDRALAIARAIARSGAQDVVLVAGKG 461


>gi|113869231|ref|YP_727720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
 gi|113528007|emb|CAJ94352.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Ralstonia eutropha H16]
          Length = 520

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 153/493 (31%), Gaps = 50/493 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GPH---YDGHDFI 57
            PL       QA    +           ++ D+R +A  + FFA   G      DG  +I
Sbjct: 4   KPLLPLEVTAQASNALAWLRTNVAAAAQLTGDTRRLARGDVFFAYVLGNARLATDGRLYI 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             A+  GAG +V   D      S  +P   V  +      +A            +  ITG
Sbjct: 64  AQAIAAGAGAIVYEADGFDWPFSDVVPHLAVSHLHQLAGPIAAGWHGNPVRGLAVTGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165
           + GKT+  + L   L +     A IG+     G P  L          +           
Sbjct: 124 TNGKTSCSQWLARVLQAAGTPCATIGTLGT--GFPGALQATGFTTPDAVQLQASLASLHD 181

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G  +         +AV+T +   HL     + E  +AK  +F     
Sbjct: 182 AGARAVAMEVSSHGLEQERVAGTHFSVAVLTNLTQDHLDYHGSMAEYEAAKESLFRWDGL 241

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQ 269
              +    D     LL A + A+G   +  +G          + +    +    +     
Sbjct: 242 RTAVVNRDDAMGQRLLAADAAAIGAPHVIEYGIDGPGAATVRRPRGEWLRATNVRATPTG 301

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   +     S E+    IG     N+L  LG         D AI AL    P EGR + 
Sbjct: 302 TAFHIDGSFGSAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALTPVEGRMEL 361

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +  A        + + Y   P ++   ++ L  ++    GR   V G     G       
Sbjct: 362 FGAAGGPDAPLAVVD-YAHTPDALAQTLAALRPVAQARNGRLWCVFG----CGGDRDPIK 416

Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
             L   ++      V L+  +           A+ D +         E      L+    
Sbjct: 417 RPLMGAVAEREADEVILTSDNPRSEDPQDILDAIADGMAVRARARQIEDRAAAILYAVRH 476

Query: 441 LVDGDVVVV--KS 451
               DVV+V  K 
Sbjct: 477 AAPADVVLVAGKG 489


>gi|72161509|ref|YP_289166.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
 gi|71915241|gb|AAZ55143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermobifida fusca YX]
          Length = 534

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 85/474 (17%), Positives = 143/474 (30%), Gaps = 45/474 (9%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A        V    V G++ DSR++ P + + A++G    G  F   A + GA  V+ +
Sbjct: 41  AATDLEQASSVDSVVVTGVTHDSRAVRPGDLYVAVQGQRVHGAKFAAQAARAGAAAVLTD 100

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
                   +  +PV  V D    L  +A         +  +I  TG+ GKTT   ++   
Sbjct: 101 PAGYDRAAATRLPVITVPDPRSRLGDVAAWIYGHPARELLLIGTTGTSGKTTVSYLVESG 160

Query: 130 LSSIKKTYACIGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEI 175
           L         +G+    +                   L  +  + D     + +S     
Sbjct: 161 LREAGMRTGLVGTVEIRVDDERIDSSLTTPEATELHGLFALMRERDVAGAAMEVSSHALA 220

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 VR  +AV T ++  HL   + + +    KA +F   E      +N DDSF   L
Sbjct: 221 LGRVAGVRYDVAVFTNLSQDHLDFHADLHDYFETKARLFT-PEFAKVAVVNRDDSFGRTL 279

Query: 236 KAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
             +    G   + +F  + +   D+        +  S   V   G         +     
Sbjct: 280 IDRITEQGAIPVTTFSATGDTAADWYATDVVLEAGGSRFRVVGPGGMAMDASVRLPGPFN 339

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               M   +  I          A        G   R         FT I +         
Sbjct: 340 VANAMAAIVALIEAGVPLPTAVAGVAAA--RGVPGRMERVDEGQDFTAIVDY----SHKP 393

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
            A  +VL+ + P  EGR   V+G     G         L    +      V L+  +   
Sbjct: 394 GAIEAVLTSLRPITEGRLTIVVG----CGGDRDRGKRPLMGEAAARLADAVILTDDNPRS 449

Query: 413 --------ALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   ++ + + +        +              +    GDVVVV  K 
Sbjct: 450 EDPVTIITSMLEGVAKVPVAQRARITVEPDRRTAIELAVTRAQPGDVVVVAGKG 503


>gi|331088263|ref|ZP_08337182.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330408507|gb|EGG87973.1| hypothetical protein HMPREF1025_00765 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 488

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 151/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A      + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   L  +      IG+    IG                       +    D  + E
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G +   T  +   I + T +   H+              +              
Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +             + +FG S  AD +       S+  ++ V            
Sbjct: 231 GIANIDDPYYEDIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I      ++  +L  +++       + K          +G+     ++  F  +ID ++
Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA      +  S+L+ +  +   R + V G     G  S+    ++ EV        +  
Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402

Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|148549597|ref|YP_001269699.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
 gi|148513655|gb|ABQ80515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas putida F1]
          Length = 496

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 143/468 (30%), Gaps = 59/468 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----------QKGAGLVVVNTD 73
              +  +++DSR++ P + F A+ G   DG + I  A+          ++GA +      
Sbjct: 16  DPLIRELTLDSRNVRPGDLFLAVPGAKVDGREHIADALARGAAAVAYEEQGASV------ 69

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALS 131
               +     P+  V  ++  L+ +A            ++ +TG+ GKT+  +++  AL 
Sbjct: 70  ----LPLTDAPLIPVKGLIAQLSDIAGRFYGEPSRQLNLVGVTGTNGKTSVTQLVAQALD 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRF 177
            + +    IG+        L   R+       +                + +S     + 
Sbjct: 126 LLGQRCGLIGTLGTGFYGELQSGRLTTPDPIAVQSTLNDLKKGGAKAVAMEVSSHALEQG 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   IAV+T ++  HL     +E    A               +N DD F   L A
Sbjct: 186 RVAALEFDIAVMTNLSRDHLDYHGSMEAY-EAAKAKLFAWPSLRCQVVNLDDDFGRRLAA 244

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMAQ 294
                             +         C E  + +  ++   +                
Sbjct: 245 DFARRPSVDHIETRLLSYSLENPEASLFCREAVFSDDGVRATLVTAQGERILRSQLLGRF 304

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+   L  V+ L A      + L V    +G   R +         ++ +  +   A   
Sbjct: 305 NLSNMLAAVATLLALDYALDEILKVTPQLQGPVGRMQRLGGGDKPLVVVDYAHTPDA--- 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
               VL  + PH  G+ + + G     G         L   ++      V ++  +    
Sbjct: 362 -LEKVLEALRPHAHGKLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRTE 416

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   ++    R   V +          + ++    DV+V+  K 
Sbjct: 417 DPSRIFDDIRPGFTRPDDVEFVAGRGEAIAHLIATAAANDVIVLAGKG 464


>gi|25028614|ref|NP_738668.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
 gi|30316046|sp|Q8FNT5|MURE_COREF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|23493900|dbj|BAC18868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Corynebacterium efficiens YS-314]
          Length = 526

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 84/484 (17%), Positives = 141/484 (29%), Gaps = 50/484 (10%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQK 63
           T  +L + I G           ++ I +DS ++A +   F A+ G    G +F       
Sbjct: 21  TLGELARTIGGELFNAPDQDLEIHNIGLDSSTLAKKAPIFAAVPGSRKHGAEFADTDRAA 80

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGK 119
           GA  V+ + D    +       P   VDDV   L   + +          +I +TG+ GK
Sbjct: 81  GALAVLTDRDGATILDRKGDTRPRLIVDDVREVLGVASSSVYGDPSRDLVLIGVTGTSGK 140

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177
           TTT  +L   L         IG+      G P+       +          M   G    
Sbjct: 141 TTTSYLLERGLMEAGYKVGLIGTTGTRIDGEPVPTKLTTPEAPTLQKLFYRMRQHGVTHV 200

Query: 178 LTHL------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +               ++A  T ++  HL     +EE   AKA  F           
Sbjct: 201 VMEVSSHALSLGRVSGSHFNVAAFTNLSQDHLDFHDTMEEYFDAKALFFRAGSPLAADHQ 260

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                     +    A   +T+ + GK  +    L   K+  EQS+         + V  
Sbjct: 261 VVCIDDEWGTRMAEVAGNAQTVATTGKRADFTAGLVTVKETGEQSFTVTVPDHGEVPVTL 320

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     N  + L        D     + ++        G+  R    Q F  ++D +
Sbjct: 321 ALPGAFNVANATLALAAAVRAGVDPVAFARGMAQ---VAVPGRMERIDEGQDFLAVVDYA 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +     +      VL  +    +GR   V+G     G    +        LS      V 
Sbjct: 378 HKPAAVAA-----VLDTLRTQIDGRLGVVIGA----GGDRDATKRAPMGELSARRADLVI 428

Query: 406 LSGFH----------------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  +                           + V            +      GD +VV
Sbjct: 429 VTDDNPRSEVPATIRAAVMEGARRGAAEADHEVEVREIGDRAEAIRALIEWAGPGDGIVV 488

Query: 450 --KS 451
             K 
Sbjct: 489 AGKG 492


>gi|226226829|ref|YP_002760935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
 gi|226090020|dbj|BAH38465.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Gemmatimonas aurantiaca T-27]
          Length = 514

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 88/484 (18%), Positives = 136/484 (28%), Gaps = 49/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L  A Q  ++       +  +  DSR +    AF A+KG   DGH ++  A   GA 
Sbjct: 7   LDALRDAGQLRAVNGALPVSIVDLVDDSRRVTSGSAFLAVKGAMQDGHAWLPKAKDAGAT 66

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVGKTTTKE 124
           L +V  +  A +  + +P   V D   +    A              A+TG+ GKTTT  
Sbjct: 67  LAIVEDEAAARV--IDMPAIVVHDGRRSAALAAAAFHHWPARAIQFTAVTGTNGKTTTVG 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD----------------VDFGIFELG 168
           +L   L    +  A IG+    IG                            D G+  + 
Sbjct: 125 LLRHLLDVAGQRAASIGTLGVLIGSAGEEMPGGGGLTTPGPVELQRVLRVLADRGVTRVA 184

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           M  S     +     V    AV T +   HL     +E    AK E+   L   G    N
Sbjct: 185 METSSHALHQHRVDGVHFAAAVFTNLTRDHLDYHGTMEAYRDAKLELLSLLAPDGVACFN 244

Query: 227 YDDSFFELLKAKSHALGIK----TIYSFGKSKNADFQLRKWKQCSEQSWM----EVQLQG 278
            DD  ++   A+    G +       +F   ++AD         +  S            
Sbjct: 245 IDDVTWQHTVAEMDVSGSQASAPRRTTFSALQDADVTAHDVVYDATGSRFELRVRTAQGT 304

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +V    IG     N L        +          LS      GR +R R       
Sbjct: 305 TQHQVTLPLIGDFNVANALGAAAGALAMGITPQDVADGLSQSPQVPGRLERLRTEPTVLR 364

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                            A+   +        R I V G     G         +   ++ 
Sbjct: 365 DYAH---TPDALERALLAVRPFTMRPDGAPSRLIVVFG----CGGDRDRGKRPVMGSIAE 417

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  ++  +            ++  + R  H                     DVVV+
Sbjct: 418 RLADVTIVTSDNPRTEDPERILDDIEAGMTRRDHQRIV-DRRDAIAAALRMASAHDVVVL 476

Query: 450 --KS 451
             K 
Sbjct: 477 AGKG 480


>gi|303246302|ref|ZP_07332582.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
 gi|302492365|gb|EFL52237.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score = 99.2 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 80/446 (17%), Positives = 127/446 (28%), Gaps = 41/446 (9%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S  +     F A  G   DG  FI  A+ +GA  V+V    +A        +  VD+   
Sbjct: 28  SAKVVSGGVFVAASGTAEDGARFIPDALARGAT-VIVAGPGIALPEGAKAALVTVDEPRK 86

Query: 94  ALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           AL  L  A     R    ++ +TG+ GKTT   ++    ++  K    +G+         
Sbjct: 87  ALGLLAAARCGTDRMAMPVVGVTGTNGKTTVSYLIERLATAAGKKVGVLGTVAYRWPGVT 146

Query: 152 TLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             A +       I E              +  S     +     +     V T +   HL
Sbjct: 147 RDASLTTPDCLTIHESLAAMAAAGCDLAVMEASSHALDQDRLAGLSFAAGVFTNLTQDHL 206

Query: 198 SNFSGIE-EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                +E   A+      E L    T  LNYDD F   L  +  A     +         
Sbjct: 207 DYHKDMETYFAAKAKLFREYLPDPATAVLNYDDPFGLRLLKEFPAAVGYGLTKAPAGFAR 266

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                      +   +      ++ EV     G H A N+L  +G    L    +T    
Sbjct: 267 LLVGGIRSHDRDGQHLGAGFGDEAFEVASPMPGRHNALNILAAMGAALTLGLPYETFDAL 326

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
                             N    T+  +  +   A      +VL        GR  AV G
Sbjct: 327 ADCHGAPGRL----ERIPNASGLTVFVDYAHTPDA----LENVLGAAREFTAGRLFAVFG 378

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA---LPRSIHVHYS 427
                G                       L+  +         ++DA   L ++  V   
Sbjct: 379 ----CGGDRDRTKRPRMAEAVSRLADVAVLTSDNPRHEAPLAIIEDAKPGLAKARKVIIE 434

Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451
                       ++   DV+V+  K 
Sbjct: 435 PDRRRAIALALDAMRPEDVLVIAGKG 460


>gi|153815690|ref|ZP_01968358.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
 gi|145846931|gb|EDK23849.1| hypothetical protein RUMTOR_01926 [Ruminococcus torques ATCC 27756]
          Length = 488

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/476 (16%), Positives = 152/476 (31%), Gaps = 47/476 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ ++   +    +  V  ++ DSR +     F  I G  +DGH ++    +KG
Sbjct: 1   MKLSKLLERLEYEVVQGSVETEVTTLANDSRKVESGSVFVCISGAVFDGHQYVSDVAKKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  ++   D+ A      + V   ++   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAIIAERDIEA---PKGVTVIKAENTRYALALMSAAYFGYPAEKLKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             ++   L  +      IG+    IG                       +    D  + E
Sbjct: 118 TYLIRSILEGVGHKVGLIGTIEAIIGDRKIPAANTTPESFTIQQYFAQMVEEGCDSVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G +   T  +   I + T +   H+              +              
Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGKDHIGP-----NEHKDFEDYKRCKAMLFQQCKL 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +   A         + +FG S  AD +       S+  ++ V            
Sbjct: 231 GIANIDDPYYADIFRGATCKVETFGFSPKADLRAENVNLVSKPGYLGVSYHVAGKADFDV 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I      ++  +L  +++       + K          +G+     ++  F  +ID ++
Sbjct: 291 EIDIPGKFSVYNSLTAIAVCRHFGVPSEKITEALKTAHVKGRIEMIKVSDDFTLMIDYAH 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NA      +  S+L+ +  +   R + V G     G  S+    ++ EV        +  
Sbjct: 351 NA-----MSLESLLTTLKEYEPKRLVCVFG---CGGNRSKDRRYEMGEVSGRLADLTIIT 402

Query: 407 SG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 403 SDNPRFEEPQEIINDIKVGIAKTDGAYVEICDRKEAIKYAIEHGQSGDVIVLAGKG 458


>gi|283781669|ref|YP_003372424.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
 gi|283440122|gb|ADB18564.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pirellula staleyi DSM
           6068]
          Length = 505

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 85/460 (18%), Positives = 141/460 (30%), Gaps = 59/460 (12%)

Query: 24  QGFVNGISI---DSRSIAPQEAFFAIKGPHYDGHDFI----LHAVQKGAGLVVVNTDMVA 76
               + IS    D     P + F        D H  +      A+++GA  ++       
Sbjct: 30  DIVCSAISTTEVD---CEPGDLFIP---EAED-HTDLLSRCQAAIERGAAAILTEQ---- 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
            +  L+IP   V D   AL  ++ A      A +  I ITGS GKT T  ++   L +  
Sbjct: 79  -LLPLAIPQAIVPDAREALGIISHAIVGNPSAKMRTIGITGSHGKTATAMLVASVLEAAS 137

Query: 135 KTY---------ACIGSYNNHIGVPLT-----LARMPVDVDFGIFELGMSHLGEIRFLTH 180
           +             I   +     P +          V        + MS  G  +  T 
Sbjct: 138 QACGVISSLGYSDSIEQVSTKCATPRSPKLAWWMSRMVKNKAAAAVIEMSSQGLSQRRTA 197

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
                IAV+T +   H S         +AK  IF  L+  G   +N DD     L     
Sbjct: 198 GTSLDIAVLTNLRNVHTSEHGSAANYLAAKKRIFSHLKPGGLAIINADDHRSRQLLE--- 254

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   + G    AD   R   +   +    +    ++++V    IG     N L  +
Sbjct: 255 -SLACPTLTVGLHAEADISARVIDRSIAEQRFTITAGDETIQVRSRIIGDAHVANCLSAV 313

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  ++ T ++ +       GR +R       G       + +    ++K A  V 
Sbjct: 314 AVGLSLGIELSTIVRGIENVTYLPGRMQRLEVGQEFGVIVDAASTPDTLAIALKTARRV- 372

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLSG--------FHV 411
                  +GR + V     E    +      +   ++       V  SG           
Sbjct: 373 ------TKGRVLLVFSASGEKNRDA----RPMLARVAEQGADLAVITSGNPRRESPREIT 422

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             L D   R    H+  T      +       GD V++  
Sbjct: 423 HQLLDGFHRPAKAHFIPTRAEAIRWALGHAQPGDCVLICG 462


>gi|295677769|ref|YP_003606293.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
 gi|295437612|gb|ADG16782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1002]
          Length = 520

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 88/489 (17%), Positives = 159/489 (32%), Gaps = 61/489 (12%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P      +  D+RS+A  +AFFA      DG D   FI  A+++G
Sbjct: 12  RQIADALSWLHAHVQPDA---HLHADTRSLAAGDAFFAYA---VDGADNRAFIDAAIERG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATI-IAITGSVG 118
           A  V+V  +        S+    V     ALN+LA        R  S A + + ITG+ G
Sbjct: 66  AAAVLVQPEGFTGKLDASVTH-AVP----ALNELAGTIASAWYRDPSDAMLAVGITGTNG 120

Query: 119 KTTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGI 164
           KT+  + +  ALS+                   + +       P     +    D     
Sbjct: 121 KTSCSQWVAAALSARGTRCAIVGTLGTGFVGQLVHTGFTTPDAPQLQRSLAQLRDAGAQA 180

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +   +     IAV T +   HL      E   +AKA +F   E    + 
Sbjct: 181 VAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFEAYETAKARLFAWPELRAAVI 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----------EQSWME 273
              D +   LL +             G+  +AD +                     ++  
Sbjct: 241 NRDDAAGRRLLASTRGHARTIAYGIEGEHGDADAKGAHQADAWLAASNVRATATGTAFHL 300

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 + +V    +G     N+L  LG++         A+  L+   P  GR +R    
Sbjct: 301 STSDWGNADVEVQTLGLFNVSNLLAVLGVLLAADVPFGAALAELAKLEPVNGRMQRLGGR 360

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L      ++ + Y   P +++  +  L  I+    G  + + G     G    +    L 
Sbjct: 361 LQNDEPLVVID-YAHTPDALEKTLEALRPIATARGGELVCMFG----CGGDRDATKRPLM 415

Query: 394 EVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             ++     +V ++  +  +         +   +  +      E      L         
Sbjct: 416 GAIAERLADNVVVTSDNPRSEDPLSIIEQIAAGMQDASKARRVEDRASAILQAIRGAARE 475

Query: 445 DVVVV--KS 451
           DV+V+  K 
Sbjct: 476 DVIVLAGKG 484


>gi|322391669|ref|ZP_08065137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
 gi|321145480|gb|EFX40873.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus peroris ATCC 700780]
          Length = 481

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/474 (16%), Positives = 146/474 (30%), Gaps = 62/474 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + IS DSR       FFA KG  +   ++++ A+ +G G  V   D       + I
Sbjct: 32  NVTFDSISYDSRKAKENCLFFA-KGAAFK-EEYLVSAISQGLGWYVAEKDY-----QVGI 84

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+++  A++ +A+        K  I+A TG+ GKTT        LS   +T     
Sbjct: 85  PVIVVNNIKKAMSLIAMVFYGNPQKKLKILAFTGTKGKTTAAYFAYHILSQRYQTALLST 144

Query: 142 SYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 G                  +    +  +    + E+  S    +    + +   
Sbjct: 145 MNTTLDGKTFFKSSFSTPENIDLFDMMAQAVKNNRTHLVMEV--SSQAYLVHRVYGLTFD 202

Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           + V   I P H+        E+    K  + E       + +N D   F LLK +     
Sbjct: 203 VGVFLNITPDHIGPIEHPTFEDYFYHKRLLMENSR---AVVVNSDMDHFNLLKEEVEQKE 259

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S   ++  + +  ++    + +                             +   
Sbjct: 260 HDFYGSQSDNQIKNSKAFRFSATGKLAGDYDIQLIGHFNQE-------------NAVAAG 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                   +              G+        G   +ID ++N +         ++S +
Sbjct: 307 LACLRLGASLEDIQKGIAETRVPGRMEVLTQKNGAKVIIDYAHNGDS-----LTKLISVV 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
             H  G    VLG     GE  +    D   +L+ +    V+L+          A+ D +
Sbjct: 362 EEHHTGNIALVLGSTGNKGESRRK---DFGLLLNKHPEIQVFLTTDDPNYEDPRAIADEI 418

Query: 419 PR--SIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                  V      +       S      D V++        Y++IN + EE+P
Sbjct: 419 SSYIEHPVKTIIDREEAIKTAMSITSQPLDAVILAG-KGADCYQIINGVKEEYP 471


>gi|163784032|ref|ZP_02178990.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880704|gb|EDP74250.1| UDP-MURNAC-pentapeptide sythetase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 167

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +     T+ID++YNANP S K AI  LS +     G++I VLGDM E+G+ S+  H ++
Sbjct: 40  IIKHKNLTIIDDTYNANPTSTKTAIETLSDLK----GKKILVLGDMKELGKFSKEKHEEI 95

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              +   NI  V+L G  V  + + +      +     + +   ++        V +K S
Sbjct: 96  GRYILNSNIDKVYLYGEEVKHIYEIIKDKKESYLL-FKEKIAYHLKKEKEP-SFVWIKGS 153

Query: 453 NSCGFYRLINLLLE 466
            S     +I+LL +
Sbjct: 154 RSMKMEDIIHLLRQ 167


>gi|256832301|ref|YP_003161028.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
 gi|256685832|gb|ACV08725.1| UDP-N-acetylmuramyl-tripeptide synthetase [Jonesia denitrificans
           DSM 20603]
          Length = 534

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/485 (13%), Positives = 138/485 (28%), Gaps = 53/485 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +  +    V+G++I +  + P + F A+ G    G  +I  A+  GA  V+ +       
Sbjct: 22  VHAMADAQVSGLAIQTARVRPGDLFVAVAGQRSHGAQYIEQAIHAGARGVLTDEAGYRIA 81

Query: 79  GSLS------IPVFGVD---DVLGALNKLAVAARLRSKATII------------------ 111
             L       +PV  VD   DV     ++A     +  A +                   
Sbjct: 82  RELDASVGHELPVLVVDDGHDVREIAGQVAATIYGQPAARLTTAGITGTNGKTTTTFFLD 141

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI  + G   T  M T+       T +   +      +   LAR   +    +  + +S 
Sbjct: 142 AILRTAGHH-TGLMGTVETRLGDHTVSSTRTTVEAPELQGFLARCLEEEVTAVS-MEVSS 199

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +  +   T +   HL     + E  A+          + G I ++ D  
Sbjct: 200 HALALHRITGTQFDVVGFTNLQRDHLDFHGSMAEYFAAKAQLFHSDYARAGVINVDDDWG 259

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +A      + T        +AD+ + +          +  LQG   + +      
Sbjct: 260 VQLHHQATIDTWSVATTPERAAHVHADWTVVEVGDYQPNYGTQFVLQGPHGQRLRCHSAL 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+        +      +                R            I +  +   
Sbjct: 320 PGTVNVANAALAALMARLAGVSDNNITEGLRSLHSIPGRMEVVSKPAQPLTIVDYAHTAE 379

Query: 351 ASMKAAISVLSQI--SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           A   A  S+   +    H  G    +       G+   S   ++  V +      V+++ 
Sbjct: 380 ALDFALSSLRQDLAARAHESGTHGVLRVVCGAAGDRDPSKRPEMGAVAARLA-DVVYIAD 438

Query: 408 ----GFHVLALKDALPRS--------------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               G     ++  L +               I V   +  +     + ++  DGD++++
Sbjct: 439 DDPHGEDRATIRQDLLKGAQSEAQRQAAHGRIIDVKEYDQRESAIDDVIAAASDGDIILI 498

Query: 450 KSSNS 454
                
Sbjct: 499 AG-RG 502


>gi|302391844|ref|YP_003827664.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
 gi|302203921|gb|ADL12599.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acetohalobium arabaticum
           DSM 5501]
          Length = 468

 Score = 98.8 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/460 (14%), Positives = 146/460 (31%), Gaps = 44/460 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           ++G++ DSR +   +AF AI+G   DG+ +I  AV++GA +V    +    I    + V 
Sbjct: 7   ISGVTCDSRKVGAGDAFVAIEGFEDDGNKYIDDAVKQGAEVVYTERE----IDHREVQVV 62

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITG----------------SVGKTTTKEMLTIAL 130
            VD+    L +LA         ++  +                    G   T  ++    
Sbjct: 63  KVDNARKILAQLANQVYNSPSESLELVGVTGTNGKTTTTHLIEKLFSGYGFTTGLIGTVK 122

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             +                        VD +  I  + +S  G        +   I V T
Sbjct: 123 IKLGDKVEEADLTTPGADQICNYMDKMVDNNVDIAAMEVSSHGIKLHRVEGLDFDIVVYT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      E+  + K E+F+   +  T  +N DD +      +  +     + ++
Sbjct: 183 NLTKDHLDLHEDFEDYLATKKELFKQAGEESTALINLDDEY----ADRIMSGLSAEVITY 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G S  AD Q+ +    +  S   ++    S +     +      N+   L   ++     
Sbjct: 239 GFSDRADIQVTEASYDAGGSRFRIESSLASPQQFEIELNLLGRHNIYNALAAAAVGLIYG 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +  +  +         +R     +  F  + D ++N           V   I      R
Sbjct: 299 LSVEEIKAQLKEFNPFFRRLEVIYDDKFTIIDDCAHNPGNYRA-----VFETIKELDYDR 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLS--------------GFHVLALK 415
              +       G      + ++  + +   N+S ++++                  + L 
Sbjct: 354 LYIINAIRGNRGITVSRENAEIISKYIPDLNLSKLYITSCEKLANKYDVVSDEEREVFLS 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 +   Y + +          +   D++++  +++ 
Sbjct: 414 TLCDSGLEFEYFDYLHPCLNQTLKQVKSNDLIILLGAHAM 453


>gi|54293892|ref|YP_126307.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
 gi|53753724|emb|CAH15182.1| hypothetical protein lpl0948 [Legionella pneumophila str. Lens]
          Length = 483

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 143/457 (31%), Gaps = 45/457 (9%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS--IGSL 81
            G V+ I  DSR +   + F A  G   DG  +I  AV  GA  VV   + +        
Sbjct: 17  DGTVSDIKNDSRLVKEGDLFAAYPGAASDGRLYIEKAVASGAAAVVYEPNNLPQGITLPT 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           +IP   +  +   L ++A            +  +TG+ GKTT    L  A   + +  A 
Sbjct: 77  AIPCIAIPQLAEKLGEIAKRFFNNPSQFLGLTGVTGTNGKTTIAYQLAQAHDLLGQHSAY 136

Query: 140 IGSYNN---------HIGVPLTLARMPVDVDFGIFE-----LGMSHLGEIRFLTHLVRPH 185
           IG+                P  L    +   +         + +S     +     +   
Sbjct: 137 IGTIGQGKVDALKPLENTTPDALCLQRLMHQYKEEGIKQVCMEVSSHALSQHRVDSLEFS 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T +   HL     ++  A   A+            +   D   + L +      + 
Sbjct: 197 QAIFTNLTLDHLDYHQTMQ--AYGAAKSRLFERSELQWAIINQDDDCQDLMSNVLKTHV- 253

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  +N D +  +W      + +EV+       +    +G     N L     +  
Sbjct: 254 KKVTYGMHQNCDVKAIQWNMDITGTEIEVKSPWGHHLLKIKALGKFNIYNSLAVYSSLLA 313

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              + +  ++ ++      GR       + Q  + L+D ++  +        +VL  +  
Sbjct: 314 SGYNPEKVVQIMAELKAAPGRM----EIVAQSPYVLVDYAHTPDALE-----NVLITLKQ 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
             +GR   V G     G         +    +     ++ ++  +            +  
Sbjct: 365 IKKGRLWVVFG----CGGDRDKTKRPIMGKAASMYADNIVITSDNPRSEDPEIILNEIAC 420

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +P S  V      +    +        D++++  K 
Sbjct: 421 GMPASAPVSKLVNREEAIAYALRKAEHNDIILIAGKG 457


>gi|256824045|ref|YP_003148005.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
 gi|256687438|gb|ACV05240.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kytococcus sedentarius
           DSM 20547]
          Length = 528

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 89/463 (19%), Positives = 145/463 (31%), Gaps = 49/463 (10%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV----------- 75
           +  ++ DSR++ P  AF A+ G   DG  F   A+  GA LVV   +             
Sbjct: 48  IAAVTHDSRAVEPGAAFVAVSGFKSDGLRFAASALAGGASLVVAEREWPTAADREADPQI 107

Query: 76  -ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
               G+  +PV  V +   AL  LA A          +  ITG+ GKTTT  +L   L+ 
Sbjct: 108 GEIEGAGPLPVVVVPNAREALGLLAAAVNGNPSRSMRVHGITGTNGKTTTSYVLYNLLAG 167

Query: 133 IKKTYACIGSYNNH---IGVPLTLARMPVDVDFGIFE--------------LGMSHLGEI 175
           I        S        GV     R   +    + E              L  S  G  
Sbjct: 168 ILGKDKVGLSTTVEVIIDGVGRPAMRTTPEA-PLVQENLRRMVGAGASDAVLETSSHGLE 226

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 V    A+ T +   HL     +E     K ++FE  E  G    N DD +   L
Sbjct: 227 LHRVTGVEYASAIFTNLTRDHLDIHGDMETYFQVKRQLFERTE--GPRLANVDDDYGRRL 284

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +          +FG S  AD+Q+      + +            E+            
Sbjct: 285 AREFPGS-----LTFGYSPEADYQIVDPTDLTLEGMQFTLRTPGHGELRLEPPLVGDYNA 339

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           + +   +   L +  D      +V    +  G+  R A       +    Y      ++ 
Sbjct: 340 LNVAGAVAVALESGHDPLAVVDAVKGLGQVPGRFQRIAEAADHGFMAVVDYAHTEVGLEM 399

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFHV 411
            ++V  +I+    GR I V G   E     +    ++   ++   I          G   
Sbjct: 400 VLTVARKIADMAGGRLICVYGAAGERDAAKRPLMGEVVSRIADVGI---ITTDDPYGEDP 456

Query: 412 LALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + + D   A       H         L   +   + D+++   
Sbjct: 457 VTIADEVMAGADPADTHIVVDRREALLEAVAMARENDLLIACG 499


>gi|226325275|ref|ZP_03800793.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
 gi|225206623|gb|EEG88977.1| hypothetical protein COPCOM_03067 [Coprococcus comes ATCC 27758]
          Length = 505

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 70/484 (14%), Positives = 140/484 (28%), Gaps = 54/484 (11%)

Query: 5   WTFHDLLQAIQGHS------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +T  +    +Q              +  V  ++ DSR +     F   KG  +   +++ 
Sbjct: 4   YTLQEYANLLQNLRMMKEFYSNGEEEKNVGYLTYDSREVTEGTLFIC-KGAAFKA-EYLD 61

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
            A++KGA   V     V       +P F VDD+  A+  LA         K TI  I G+
Sbjct: 62  AAIEKGAIAYVSE---VKYETKEDVPYFLVDDIRKAMPPLAEKFNNAPWKKLTITGIGGT 118

Query: 117 VGKTTTKEMLTIALSSIK--------------KTYACIGSYNNHIGVP-----LTLARMP 157
            GK+T+   +   +                    Y  +    +HI  P         R  
Sbjct: 119 KGKSTSAYYMKAIVDDYMEATGGKESAVLSSIDIYDGVIKKESHITTPESVELQEHLRHA 178

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           V+      E+ +S           ++  + +   I+  H+S     +      +++    
Sbjct: 179 VESGITFAEMEVSSQALKYNRVDNMQFDVGIFLNISEDHISPIEHPDFEDYFSSKLKIFG 238

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +    +     D    +LK       + T  +  K+  AD    + ++   ++   V+ +
Sbjct: 239 KSRYGVVNMDADFADRILKESKVCEKVLTFST--KNPEADVYGYEIQKDGHETVFMVKTE 296

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E      G    +N L  +    +L    +     L           R     +  
Sbjct: 297 LFDEEFRLTMPGLFNVENALAVIAASILLEIPKEYMHSGLLRAR----SSGRMELYGSAD 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +    Y  N  S +   S +    P        ++      G+ +     DL  V  
Sbjct: 353 KNLIAVVDYAHNKLSFEKLFSSIKDEYPDYN-----IVSIFGCPGKKAFIRRRDLGTVAG 407

Query: 398 LYNISHVWLSGFH---------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            Y    V+L+               +   +  ++      E                 + 
Sbjct: 408 QY-AKKVYLTAEDPGYEPVEQISKEIAQYVEAQNCPYAMIEDRGEAIKAAMDEAEGKTIF 466

Query: 448 VVKS 451
           ++  
Sbjct: 467 LITG 470


>gi|121535664|ref|ZP_01667469.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
 gi|121305768|gb|EAX46705.1| UDP-N-acetylmuramyl-tripeptide synthetases [Thermosinus
           carboxydivorans Nor1]
          Length = 492

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 88/459 (19%), Positives = 144/459 (31%), Gaps = 40/459 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GIS  S  I P   F AI+G   DG+ +   AV+ GA  VV +      +  L+IPV  V
Sbjct: 13  GISCHSGEIKPGWVFVAIRGRAADGNAYAAEAVRHGAKAVVTDAP--DRLPPLAIPVAVV 70

Query: 89  DDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            D   AL  LA            ++ +TGS GKTT   ML     +       IG+   +
Sbjct: 71  PDARQALAALAAHFYNHPSRSLNLVGVTGSNGKTTVALMLEHIFRTAGHLPGLIGTVRVN 130

Query: 147 IGVPLTLARMPVDV------------DFGIFELGM--SHLGEIRFLTHLVRPHIAVITTI 192
           +G     +R+                D G+    M  S  G        V     ++T I
Sbjct: 131 VGKISFPSRLTTPDAASLQRYLALMRDSGVTHAAMEVSAQGVEMSRVDHVTFSCGILTNI 190

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS--- 249
              HL       +  +AK      L     + +N DD     + A +    I    +   
Sbjct: 191 CADHLDFHHTFADYLAAKERFLT-LLGPSPLVVNRDDDHCRRMAALAGGPVIAVSLTGPA 249

Query: 250 --FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +  +      K++           +    + V     G H  +N L+      +  
Sbjct: 250 DVTAQILHTPAYGSKFRLTWSTLPGRQNIPAGQITVSLPLAGRHNVENALLAAAAGLLHG 309

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D    A S F   E R + YRC         + +    NP S+ A  + ++      
Sbjct: 310 ISPDEIAAAFSSFQGVERRLEIYRCGGF-----TVIDDTALNPGSIDAVFATITTFRYRR 364

Query: 368 EGRRIAVLGDMCEMGEL------SQSFHIDLAEVLSLYNISHV-----WLSGFHVLALKD 416
                A+ G              ++       E++   +   V       +      L +
Sbjct: 365 LVVVNAIRGGRGAAINALNAITMARWQAALPFELIVTASADQVGPADTVTAEERQAFLGE 424

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                    +   +          L DGD++V+  +   
Sbjct: 425 LSRTGAAFSFYLDLQTAIQSALQRLYDGDLLVLLGAQGM 463


>gi|291521921|emb|CBK80214.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 507

 Score = 98.4 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/495 (13%), Positives = 137/495 (27%), Gaps = 68/495 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L + I            +  I++ S+ +     F  IKG   DGH +I  A ++GA 
Sbjct: 3   LKALFERIPAVLCQGSWDTDIASIAMCSKEVTNNSLFICIKGMEQDGHQYIQEAAERGAA 62

Query: 67  LVVVNTDMVAS---------------------IGSLSIPVFGVDDVLGALNKLAVAARLR 105
             +V                                 + +  V +   A    A A    
Sbjct: 63  ACLVEEAFWKKSASVHGNLKQAEKKTSAYGELKLPEQMTIVSVQNTREAAAWAAAAFYRY 122

Query: 106 SK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP------------- 150
                 +I ITG+ GKT+T  M+   L +       +G+ +  IG               
Sbjct: 123 PSKELKVIGITGTKGKTSTTFMIRDILEAAGYKTGLLGTIDYEIGEEKKRAERTTPEAID 182

Query: 151 ---LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                         F + E+  S  G     +  +   + V T +   H+      +++A
Sbjct: 183 IQRYLRKMADSGCRFAVMEV--SSQGLKLHRSDSILFDVGVFTNLGRDHIGP-KEHKDMA 239

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                     +K      N DD ++  +           + ++   + AD Q       +
Sbjct: 240 EYAHYKSLLFQKCCFGIGNIDDPYYREI----FKDASCQVCTYSCRQKADVQASDIMLVN 295

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               +    +    E      G     N +  + +      D +   KAL          
Sbjct: 296 RNGQLGTFFKVNGEEYAVSAPGEFSVYNAVAAITVCRHYGIDQEIIRKALKTIRVPGRV- 354

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                  N   + L+ +  +       +  ++L  +  +   +   + G     G  S +
Sbjct: 355 ---EVIDNDRGYLLLIDYAHNA----MSLKNILETMRRYHPRQLWVLFG---CGGGRSAA 404

Query: 388 FHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRS-----IHVHYSETMDGLFLFIQ 438
              ++  V   Y    V  S          +   +                      F+ 
Sbjct: 405 RRREMGCVAGKYADFTVITSDNPRYEEPERIMQTIEEGMKETKGQYQMMVDRKEAMRFML 464

Query: 439 SSLVDGDVVVV--KS 451
           +    GD++++  K 
Sbjct: 465 AQGRPGDILILAGKG 479


>gi|183983188|ref|YP_001851479.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
 gi|183176514|gb|ACC41624.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium marinum M]
          Length = 521

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 78/488 (15%), Positives = 155/488 (31%), Gaps = 58/488 (11%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L   +              P   + G+++ ++++ P + F A+ G    G      A
Sbjct: 18  LAELAVQVGAVLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHAADA 77

Query: 61  VQKGAGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           +++GA  V+ +   V +I +L      +PV       G L + A           T++ I
Sbjct: 78  IERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGI 137

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMP 157
           TG+ GKTTT  ++   L +  +    IG+    I                   +  A + 
Sbjct: 138 TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPALQAMLAAMVE 197

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD  + E+  SH   +  +  + R  +   T ++  HL     + +   AKA +F+  
Sbjct: 198 RGVDTVVMEV-SSHALTLGRVDGI-RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPA 255

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +               A    T+ + G+  +             Q +  +   
Sbjct: 256 SALRGHSVVVCIDDEAGRAMADRAGAAITVSATGQPAHWRATDVAPVGAGGQEFTALDPA 315

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G    V     G++   N L+ L I+  +    + A   L                    
Sbjct: 316 GVGHRVRIGLPGHYNVANCLLALAILDAVGVSPEQAAPGLRETRVPGRL----EQVDRGQ 371

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F  + + Y   P +++  +S L     + + R   V G     G+        +  + +
Sbjct: 372 DFLALVD-YAHKPGALREVLSTL----RNPQRRLAVVFGA---GGDRDPGKRGPMGRIAA 423

Query: 398 LYNISHVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445
                 V ++     G    A++  +         +  V           +       GD
Sbjct: 424 EL-ADLVVVTDDNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGD 482

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 483 VVLIAGKG 490


>gi|150020386|ref|YP_001305740.1| Mur ligase middle domain-containing protein [Thermosipho
           melanesiensis BI429]
 gi|149792907|gb|ABR30355.1| Mur ligase, middle domain protein [Thermosipho melanesiensis BI429]
          Length = 511

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 138/356 (38%), Gaps = 17/356 (4%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MP 157
           A     R    ++AITGS GKT+TK  L   +S   KT    GSYN  +G+   +   + 
Sbjct: 159 AKRKIKRLNPEVVAITGSYGKTSTKFYLYHLISEYYKTLMTPGSYNTTMGITKVIREKLD 218

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D  I EL  +       L  LV P I+VIT+I   H   F     I     +  +  
Sbjct: 219 KSHDVFIVELAENDNYGFEKLLDLVNPTISVITSIGIQHFEEFENESNILDNFKKYIKDS 278

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +N+DD     +      +         + +  D +L K       +++     
Sbjct: 279 RSGKKFVVNFDDENIRKIIKNKDIISCGIENKEAQYRIVDLKLDK----DGSNFVLETPN 334

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  E   +  G     ++L+ +     L   V+  I+        + R       +   
Sbjct: 335 NQKFEFTTNVYGKENVLDLLLAIVTAFELKVPVEEIIERAKNIVKPKHRL----EVIRDD 390

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T+ID+++N+NP   K     L  +S  G+ R+I +     E+GE     H  L +++S
Sbjct: 391 TITVIDDTFNSNPKGFKM---ALEYLSLFGKRRKILITPGFVELGEKEDEEHYKLGKLIS 447

Query: 398 LYNISHVWLSG-FHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            Y +  V+L        + + L  S     ++   ++D +   +++ L  GDVV+ 
Sbjct: 448 KY-VDVVFLVDKKRTKKILEGLEDSNFTGEIYTVNSLDEVTEMLKTFLKSGDVVLF 502


>gi|90418199|ref|ZP_01226111.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337871|gb|EAS51522.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 482

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 76/471 (16%), Positives = 144/471 (30%), Gaps = 42/471 (8%)

Query: 5   WTFHDLLQ--AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                L +  A             + G+ +DSR       F A+ G   DG  F+  A  
Sbjct: 1   MKLSKLAEDLATG----QTTSDPDIAGLCVDSRETGAGFLFAALAGSRADGAGFVADAEA 56

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  ++       +  + ++PV    D   A+  +A          ++AITG+ GKT+ 
Sbjct: 57  RGAAAILA---GEGAEIATTLPVLRAADPRRAIALMAARFHGAQPEHVVAITGTAGKTSI 113

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LG 168
                   +      A +G+             +       +                + 
Sbjct: 114 ATFTRQIWARCGLAAASVGTTGVVSPSRDEYGSLTTPDPIALMRLMAELAGEGVTHAAME 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     VR   A  + +   HL     IE   +AK  +F  L   G   + + 
Sbjct: 174 ASSHGIDQRRLDGVRLAAAAFSNLGHDHLDYHPDIESYFAAKMRLFTTLLPKGAPAVIFA 233

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D  +              + + G+  N    L++ +   ++   E++ +G+   VV    
Sbjct: 234 DDRWSGRAIDVATSVGAKVMTVGRGGNF-LTLKRLELERQRQIAEIEAEGRIHRVVLPLA 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L+  G+          A+ AL       GR        +      +D ++  
Sbjct: 293 GEFQMANALVAAGLAIATGVATADALAALEHLKGAAGRLDLAGTTADGA-PVFVDYAHKP 351

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL+ + P   GR + V+G     G         +   ++      V ++ 
Sbjct: 352 EALE-----NVLAAVRPFTTGRVVVVIG----CGGDRDRAKRPMMGEIAARLADIVIVTD 402

Query: 409 FH------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +           + +  +                 +S   GD VV+  K 
Sbjct: 403 DNPRSEEPAAIRAEIMTAANGAREIGDRRAAIREAVASARTGDTVVIAGKG 453


>gi|84495977|ref|ZP_00994831.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
 gi|84382745|gb|EAP98626.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Janibacter sp. HTCC2649]
          Length = 515

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/474 (16%), Positives = 158/474 (33%), Gaps = 48/474 (10%)

Query: 6   TFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +  DL   +      I  +    V G+++DSR++ P + + A+ G    G DF       
Sbjct: 13  SVRDLALLVSAPADVIDDLDDVAVTGVTLDSRAVRPGDLYAALPGSRAHGADFAAQVADA 72

Query: 64  GAGLVVVNTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           GA  V+ + D V  + +  + +PV  V+     L  +A      +    T++ ITG+ GK
Sbjct: 73  GAAAVLTDADGVERLRAAGVDLPVIVVEAPRSVLGTIAARIYGTTDLSLTMVGITGTNGK 132

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163
           TTT  ++  AL ++ +    IG+    IG                  +       D D  
Sbjct: 133 TTTAYLVASALDALGQRTGLIGTVETRIGDERIKSVRTTPESTDLHAILAVMDERDTDTC 192

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH      +  ++   +++ T ++  HL   + +E+  SAKA++F   E++   
Sbjct: 193 VMEV-SSHALSQHRVDGVL-YDLSLFTNLSQDHLDFHADMEDYFSAKAQLFT-PERSTRG 249

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD +   L  +            G++ +    +   +           L+G  +E+
Sbjct: 250 LICVDDIWGRRLAEECGIPVTTLTTIEGQTADWVVTVDATEP------ARFALRGTGIEL 303

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                           +  V++L    DT     ++       G+  +    Q       
Sbjct: 304 DLRSALPGDFNVANTAMAAVALLLLGEDTEAVGRAILTDPHVPGRMEKVTPTQSTDVDSG 363

Query: 344 ESYNANPASMKAAIS-VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                + A    A+   L+ + P   GR + VLG     G              +     
Sbjct: 364 LLAVVDYAHTPDAVEAALAALRPTTTGRLVVVLGA----GGDRDRGKRHGMGRAAAGLAD 419

Query: 403 HVWLSG-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDG 444
            V ++           ++ A+            +                  +G
Sbjct: 420 VVVVTDDNPRSEDPAQIRTAVVEGARSIDTTALLVEVGDRRKAIREGVRLAREG 473


>gi|316933181|ref|YP_004108163.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
 gi|315600895|gb|ADU43430.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris DX-1]
          Length = 485

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 71/469 (15%), Positives = 145/469 (30%), Gaps = 35/469 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL  A +           + G+++DSR++ P + FFA+ G   DG  F+  A+  G
Sbjct: 1   MKLRDLFSA-ETEIAASAADRPIGGLAVDSRAVRPGDLFFALAGAKTDGARFVAAAIAAG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  V          G L++P   + +   AL + A     R    I A+TG+ GKT+   
Sbjct: 60  AVAVAGEHP---PAGDLAVPFVQLSNPRLALAQAAARFYPRQPEVIAAVTGTSGKTSVAA 116

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
                   +    A IG+             +       +                L  S
Sbjct: 117 FTRQIWQRLGHASASIGTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGITHLALEAS 176

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +F    VR      T ++  H+     +    +AK  +F  L + G   +   D 
Sbjct: 177 SHGLDQFRLDGVRVAAGGFTNLSRDHMDYHPTVAHYLNAKLRLFRHLVQDGGAAVIAADH 236

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  ++       + + G++ +    +       +     + +              
Sbjct: 237 DCSAEVIEAAGARGLRLITIGRNGDPGEGIALIDAAIDGFAQILTVAHAGRRYSIKLPLV 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              Q     +    ++    D+A    ++ H +   G+      ++G    +D ++  + 
Sbjct: 297 GEFQIENALVAAGLVIGTGGDSAASFAALEHLEGAPGRLDLVGAHRGAPVFVDYAHKPDA 356

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +       L  + P+ + + + V G     G    +    L   ++  +   V ++  +
Sbjct: 357 LA-----KSLQALRPYAKRKLVVVFGA----GGDRDAGKRPLMGAIAAEHADTVIVTDDN 407

Query: 411 VLA------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          L  +                   L  GD +V+  K 
Sbjct: 408 PRSEDPAAIRAAILAAAPGARAIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|271502047|ref|YP_003335073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
 gi|270345602|gb|ACZ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dickeya dadantii Ech586]
          Length = 494

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 77/472 (16%), Positives = 148/472 (31%), Gaps = 42/472 (8%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+ +    +   P+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   VV 
Sbjct: 6   LRDVLAPWVNDAPERALREMTLDSRVAAAGDLFVAVVGHKTDGRHYIPQAIAQGVAAVVA 65

Query: 71  NTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
             D     G+L     +PV  +  +   L+ LA     +      +I +TG+ GKTTT +
Sbjct: 66  QADDATPDGTLTEMHGVPVIYLAHLNQRLSALAGRFYRQPSTALQLIGVTGTNGKTTTTQ 125

Query: 125 MLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMS 170
           +L     ++ K +       N  +G                               + +S
Sbjct: 126 LLAQWSQALGKTSAVMGTVGNGLLGHVAPSENTTGSAVDVQQILSQLVEQGADFAAMEVS 185

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G ++     +    AV T ++  HL     +    +AK  +F   +    +    D+ 
Sbjct: 186 SHGLVQHRVEALSFAAAVFTNLSRDHLDYHGDMANYEAAKWRLFAEHQVGQKVINADDEV 245

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L     A+ +    S   S+    +            ++      +  +    +G 
Sbjct: 246 GRRWLSRLPDAVAVSVAGSVDSSRARWLKATHIDYHDSGFTVQFDSSWGAGAINSRLMGE 305

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L+ L  +  L   ++  ++A S   P  GR + +  +           + +A  
Sbjct: 306 FNVSNLLLALATLLSLGYPLEQLVEAGSALQPVCGRMEVFLASGRPTVVVDYAHTPDA-- 363

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    L+    H  G    V G     G         L   ++      V ++  +
Sbjct: 364 -----LEKALAAARLHCRGTLWCVFG----CGGDRDRGKRPLMGAIAEQLADRVIVTDDN 414

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L  +  V                    DVV+V  K 
Sbjct: 415 PRSEDPQAIVTDILSGLLDAGRVQVIAGRAEAVTSAVMQAAADDVVLVAGKG 466


>gi|148975181|ref|ZP_01812105.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
 gi|145965105|gb|EDK30355.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Vibrionales bacterium SWAT-3]
          Length = 484

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 81/473 (17%), Positives = 150/473 (31%), Gaps = 54/473 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T    L+ +            +   S +S  +  Q+ F   +G  +D H +I  A+  GA
Sbjct: 5   TLKSFLKQLGA--------LSIRRFSTNSEHVQCQDVFVCREGTSHDSHRYIESAITNGA 56

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKE 124
             ++    + A     S+PVF       +L  + A       K   I ITG+ GKTT   
Sbjct: 57  VAIIATKPISA-----SVPVFVTGSYYQSLLLIKAFYQYPHKKIRHIGITGTNGKTTVAH 111

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGM 169
            L   L + +++         + G    L+    D                   + EL  
Sbjct: 112 GLNQVLKTKRQSAYIGTLGVEYAGNKQELSNTTPDSVTLLNLFKDMADAQVTDNVMEL-S 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           SH         +    + VIT I   HL     ++    AK +I + ++  GT  +N DD
Sbjct: 171 SHALVQDRAGFVP-LSVGVITNIGRDHLDYHKTLDGYVQAKLQILDRIQPNGTAVINLDD 229

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +   ++ +      +S   +  AD  +         +   +  QG    V      
Sbjct: 230 HHANVAIERACSRVNVLTFSM-NNSEADLYVEDLNVEPFGATFVLNNQGNKERVFSQLPF 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
               +N L     +  L   +     AL+     +GR K                +++  
Sbjct: 289 LFNVENTLAMAATLLALNWSLADIANALNSVVAPDGRSKYLSLDNGALALVDYAHNFDG- 347

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
                   ++   I      R I V+G   +    +     D+ ++ + ++   V  +  
Sbjct: 348 ------LTALYQGIQSQSAKRVITVVGVTGDRIRDA----ADIGKLCATHS-DVVIFTSD 396

Query: 408 ---GFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
              G     +  AL   +     +            +     GD+++V  K S
Sbjct: 397 NPLGEMQEDIFRALTSQVSPTLCYEISDRYEAIQLAKQLSRGGDLILVCGKGS 449


>gi|261366336|ref|ZP_05979219.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
 gi|282571939|gb|EFB77474.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Subdoligranulum variabile DSM 15176]
          Length = 493

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 70/475 (14%), Positives = 138/475 (29%), Gaps = 49/475 (10%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LLQA  G  +    +  V  +  DSR++ P   F  + G H DGH + + A   G
Sbjct: 1   MNLCELLQATDGVLLQGDARADVQTLCYDSRAVTPGALFVCLPGLHTDGHAYAVRAAAAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-----------------K 107
           A  +V    +       ++PV  V     AL +LA+                        
Sbjct: 61  AVGIVCERPIPG--LPEALPVIQVTHSRRALAQLAIRLYGEPARQLTMIGITGTKGKTTT 118

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFE 166
           A ++A   +        + T  +      +    +      +   L RM     D  + E
Sbjct: 119 AHLVAAVLTAAGRKVGLIGTNGVRWPGYRHPLDHTTPESSDLQQLLRRMVDAGCDTCVME 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S LG        +   I + T ++P H+         A  +A       +     +N
Sbjct: 179 V--SSLGLKMDRVTGIEYDIGIFTNLSPDHIGP-GEHASFAEYRAWKSVLFRRCRVGIVN 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E +  +        + ++G  + AD++         +  +       +      
Sbjct: 236 ADDPQTEAILTQH----TCRVVTYGMDRPADWRAGTDFTLLHRPGLLGVTFTAAGPEGGS 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG--RGKRYRCALNQGFFTLIDE 344
                           ++ + A     +   +V           R         FT++ +
Sbjct: 292 REYQLAMPGRFSIYNALAAIAAAGILQLPDTAVQTGLRTAVVEGRVEPVPIHAPFTVVLD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A+     ++L+ +  +   R I V G     G  S+     + E  +       
Sbjct: 352 YAHNEAAA----ENLLTTLRAYRPTRLIVVFG---CGGGRSRVRRFGMGEACARL-ADFC 403

Query: 405 WLSGFHVL---------ALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVV 447
            ++  +            ++  L R                          GD+V
Sbjct: 404 IVTEDNSRGEPLADILADIRTGLRRGNPDTPFVEISDRRQALYDALDMARPGDIV 458


>gi|15805328|ref|NP_294020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
 gi|8134579|sp|Q9RXL3|MURE_DEIRA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|6457968|gb|AAF09877.1|AE001890_9 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Deinococcus radiodurans R1]
          Length = 490

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 143/482 (29%), Gaps = 54/482 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               DL  A+Q  +    P     V G++ ++  + P  AF AI+G  +DGH F+  A  
Sbjct: 1   MRLSDLAAALQLPAPETDPQTDTEVTGVTHNAAWVQPGSAFVAIRGAKFDGHSFMEQAQA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
            GA  V+     +A   +  +P   V +   AL   A A          ++ +TG+ GKT
Sbjct: 61  AGAVAVLGE--GLADGQTSPLPYLTVPNARAALADAAAALAGHPSRELKVVGVTGTDGKT 118

Query: 121 TTKEMLTIALSSIK------------------KTYACIGSYNNHIGVPLTLARMPVDVDF 162
           TT  +    L S                    + +    +      V  TL  M      
Sbjct: 119 TTSWLTRHLLRSAGLATGLLSTVGYELPDGELRHFPAHFTTPEAPQVQDTLREMVAAGAQ 178

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
                  SH   +  +   V   +AV T ++  HL     ++   + K ++ E       
Sbjct: 179 ATVLEASSHALSLDRV-RGVDWDVAVWTHLSSEHLDFHGTLDNYFADKRKLVER------ 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  +   A+   +         ++++AD++ +  ++        V       +
Sbjct: 232 -ARFAVLNVDDPWTAQLRGIAPGETTYSAENQHADWRAQDIEERHSGLHFRVVSPAGDFQ 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                IG     N L  +     L A        L+ F    GR +            + 
Sbjct: 291 AELPMIGRFNVANALAGMAAAHHLGATALQLQAGLASFRGVPGRMELVPGGATSPRVIVD 350

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                 +          L  +     G    V+G     G         L EV +     
Sbjct: 351 FAHTPPS------LEKALGTLRATTAGHLWVVIGSAG--GPRDPYKRAPLGEVATRL-AD 401

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV-- 449
           H  L+               ++         ++           +  +    GD V++  
Sbjct: 402 HAILTEEDCRDTPLQDILNEMERGAREEGRSNFVSIGDRREAIRYAVTHAQPGDTVLLAG 461

Query: 450 KS 451
           K 
Sbjct: 462 KG 463


>gi|282897071|ref|ZP_06305073.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
 gi|281197723|gb|EFA72617.1| UDP-N-acetylmuramyl-tripeptide synthetase [Raphidiopsis brookii D9]
          Length = 495

 Score = 98.0 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 72/475 (15%), Positives = 142/475 (29%), Gaps = 40/475 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63
               +LL  I G          V GI  +S +    + F  I G   DG +F        
Sbjct: 1   MNLRELLAVIDGVEYQGK-DVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
               ++       +  +    V    ++     ++  A       K  I+ +TG+ GKTT
Sbjct: 60  AVAAIISPQAASKTSPTSDALVITASNLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------L 167
           T  ++   L+                 G              +  ++   +        +
Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWPGFSQVANHTTPFAIDLQHNLAQAVDAGCQLGIM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S     +         ++V T +   HL     +E+   AKA +F      G   +N 
Sbjct: 180 EVSSHSLAQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVINI 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + + L         +       + +ADF +             +     +       
Sbjct: 240 DDQYGQRL--TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +  +N+L  +  V  L  D++T +  +  F    GR +R +   +Q    ++D ++ 
Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQIDPHQDISVIVDYAHT 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +        ++L    P   GR I V G     G             ++      V ++
Sbjct: 358 PDSLE-----NLLKAARPFIPGRIICVFG----CGGDRDKTKRPKMGRIAADLADVVVVT 408

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   +P  +                     GD V++  K 
Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463


>gi|83312942|ref|YP_423206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Magnetospirillum magneticum AMB-1]
 gi|82947783|dbj|BAE52647.1| UDP-N-acetylmuramyl tripeptide synthase [Magnetospirillum
           magneticum AMB-1]
          Length = 478

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 88/450 (19%), Positives = 160/450 (35%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G++ DSR++ P   F A+ G   DG  FI  A+     + V+  +         +
Sbjct: 9   DVTITGLTADSRAVRPGYLFAALPGTKADGRAFIPAALAA-GAVAVLAPEGSRPDLPPEV 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI--- 140
            +    +       +A A        + A+TG+ GKT+T E     ++ +    A I   
Sbjct: 68  VLVTDANPRRRFALMASAFHGAQPRVMTAVTGTNGKTSTAEFFRQIMARLGHAAAAIGTL 127

Query: 141 ----GSYNNHIGVPLT-----LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVI 189
                 ++N  G+         A +    + G+    M  S  G  +     VR   A  
Sbjct: 128 GITAPGWDNQGGLTTPDPAGLHADLARLAEMGVTHACMEASSHGLDQHRLDGVRLMAAAF 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +   HL   + +   A AK  +F  +   G   +   DS       +  A    T+  
Sbjct: 188 TNLTRDHLDYHADMNAYAEAKLRLFAEVLPEGATAVINADSDLAPRAVELCAKRGITVLG 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG+    D +L + +  +    +++++ G+++ +     G   A N L  LG+     AD
Sbjct: 248 FGR-TARDLRLIEARPTAAGQELDLEIMGRAVTIRLPLAGRFQADNALAALGLALACGAD 306

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A++AL       GR ++     N      +D ++  +         VL  + PH   
Sbjct: 307 PVAALEALGHLDGVPGRLQQVASRANGA-PIYVDYAHTPDALET-----VLKALRPHAAR 360

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH- 423
           R +AV G     G    +    L   +       + ++          A++ A+  +   
Sbjct: 361 RLVAVFG----CGGDRDAGKRPLMGAIGCRLADAMIVTDDNPRSEDPAAIRAAVRGACPA 416

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   G      S L  GDV+V+  K 
Sbjct: 417 GIEIADRRGAIRAAVSGLQKGDVLVIAGKG 446


>gi|322385003|ref|ZP_08058653.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
 gi|321270913|gb|EFX53823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus cristatus ATCC 51100]
          Length = 481

 Score = 97.6 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/487 (16%), Positives = 153/487 (31%), Gaps = 67/487 (13%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           G           + IS DSR    +  FF +KG H+ 
Sbjct: 1   MIKIETILDILKKDQNFREIIADGDYYFNYQDLTFDKISYDSRKADSRTLFF-VKGEHFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G G  +  TD+      + IPV  V+D+  A++ +A+        K  +
Sbjct: 60  -REFLEKAVAAGLGFYLSETDL-----EVGIPVLLVNDIKQAMSLIAMEFYGHPEQKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
           +A TG+ GKTT        L    K            G     + +       +FE+   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILKQSHKPALLSTMNTTLDGETFFKSTLTTPESLDLFEMMAQ 173

Query: 170 -------------SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
                        S    ++   + +   + V   I+P H+        E+    K  + 
Sbjct: 174 AVANARTHLIMEVSSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +       + +N     F++L  +    G         +     Q   ++   + +    
Sbjct: 234 DNSR---AVVVNSGMDHFQVLAEQVANYGHDFYGPDSANSILQSQAFSFEAQGKLAG--- 287

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                      + I      N    +           +     +        G+      
Sbjct: 288 ----------SYDIQLIGRFNQENAIAAGLACLRLGASLEDIQAGIAQTRVPGRMEVLTQ 337

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + G    +D ++N +  +      +LS +  H +G+ + VLG     GE  +    D   
Sbjct: 338 SNGAKVFVDYAHNGDSLA-----KLLSVVQEHQKGQTVLVLGATGNKGESRRK---DFGL 389

Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSS-LVDGDV 446
           +L+ +    V L+         +A+   +   I          +       S    +GD 
Sbjct: 390 LLNQHPEIKVILTADDPNREDPIAIAKEIASYISFEVDMIADREEAIKKAISLTSAEGDA 449

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 450 VILAGKG 456


>gi|291288108|ref|YP_003504924.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885268|gb|ADD68968.1| UDP-N-acetylmuramyl-tripeptide synthetase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 484

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 145/479 (30%), Gaps = 56/479 (11%)

Query: 5   WTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
                LL    I+G  + +  +  V  I+IDSR+I  +  FFA +G   D H F      
Sbjct: 1   MKVSQLLDGLSIKGFDLDVDFETDVKDINIDSRNIKRKAPFFAFQGAAVDSHKFAAEVYA 60

Query: 63  KG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            G    VV    +        +P   V+D   AL +       +       IA+TG+ GK
Sbjct: 61  SGKVPFVVAEHKIE------GVPTVVVEDGRKALARACRNFFGKPDEEMDSIAVTGTNGK 114

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFG 163
           TTT  ++   L +  +    +G+                                  D  
Sbjct: 115 TTTTYIINEILKTAGRKSVLVGTTGVKYDDKFIYMDSTTPPTYEFFKVLRDAKDAGCDTL 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH      +  +V   +A+ T ++  HL     ++E   AK  +F        +
Sbjct: 175 VMEV-SSHALHQHRINGVV-FDVAIFTNLSGDHLDYHKTMDEYFEAKKILFTPEYSRVGV 232

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                +    LLK            S+G +  ++    +          +      S+E+
Sbjct: 233 IGKDSEFGERLLKEAEVDR-----VSYGITNKSEITAEEIWFGLSGLRAKFVYPAGSIEM 287

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N++       +L  D       +       GR +++  +     F    
Sbjct: 288 ESSLVGLHNLENLMAAGSGCIMLGIDAKHIKSGIERLKNVPGRLEKFEKSNGAYIFVDFA 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            + +A         +VL  +    E R I V G     G              +  +   
Sbjct: 348 HTDDA-------LKNVLEALGSFKENRVITVFG----CGGDRDRSKRPRMAKTAELDSDV 396

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +      +  V                    D+V++  K 
Sbjct: 397 VIVTSDNPRTEDPQQVIEDILVGFENADSVIICPDRSKAIQKAVEMAEPKDIVLIAGKG 455


>gi|332298508|ref|YP_004440430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
 gi|332181611|gb|AEE17299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Treponema brennaborense DSM 12168]
          Length = 557

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 128/524 (24%), Gaps = 90/524 (17%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--------- 57
              LL   Q  + G      +  I  DSR++     FFA+ G H  G+ FI         
Sbjct: 5   LSQLLTGFQHETAGGSSDPIITDICFDSRAVRAGSLFFALPGTHVHGNAFIAKAIARGAA 64

Query: 58  ---------LHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSK 107
                      A+                      PV   V D   A++  A A      
Sbjct: 65  AIVYQDDLPEDAL----------RAAEERNNEAEAPVLVRVRDARFAMSPAADAFYDSPS 114

Query: 108 AT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--------------VPL 151
               +I +TG+ GK++T   +   L    K    I +    +G               P+
Sbjct: 115 EKLAVIGVTGTEGKSSTVSFIWQLLGLCGKKAGFISTVQYSLGDDAIANPEHQTTPEAPI 174

Query: 152 TLARMP----VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI- 206
              ++        ++ + E     L         VR    V   +   HL      E+  
Sbjct: 175 VQRQLYEMVQNGCEYAVVESSSHGLSRKTNRLGDVRFDAGVFMNVTHEHLEFHGTHEQYK 234

Query: 207 -----------ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
                      A    +   G  +    F   +                   ++ G +  
Sbjct: 235 SDKANLFRALDAHDHLKTIGGTRRRVPAFGVVNLEDPAAAYFNDATEKTVYGFTTGGAAG 294

Query: 256 ADFQLRKWKQC--------------SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            +  +   +                S+       +               +   +     
Sbjct: 295 KNADIPLPEIPAEIPRFSADRVAAKSDGIAFTANVPPSDTIRATAPDPVAVTAPLPGAFN 354

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + ++L + +  +      F     +  + +    +       + +           S  +
Sbjct: 355 VYNVLASLITVSTITGIPFARVAEKCPQLQPVKGRMTVIDKGQPFEVIVDYAHTPSSFET 414

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-------- 413
              P  +  R  ++      GE       +   + + +    V L+     A        
Sbjct: 415 IFPPLRKRARNRIIVLFGSGGERDTKKRPEQGRIAARW-CDVVILADEDPRAEDPAALLE 473

Query: 414 -LKDALPRSIHV-----HYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +      +        +             +   +GD+V++  
Sbjct: 474 MIAAGCRSAGKTEGNGLYVVPPRPQAIRKAFALAAEGDIVLLLG 517


>gi|114321347|ref|YP_743030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311119|sp|Q0A6J7|MURE_ALHEH RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|114227741|gb|ABI57540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 498

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 81/490 (16%), Positives = 139/490 (28%), Gaps = 64/490 (13%)

Query: 4   LWTFHDLLQ-AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF------ 56
           +     LLQ  +    +       V G+++DSR I P   F A++G  + G  +      
Sbjct: 1   MMRLRTLLQPWLD---LTDADDRPVGGLAVDSRDIEPGFVFVALRGSRHHGLGYLGDALA 57

Query: 57  -------ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-- 107
                     A       V    D   +     +P+  V D+   L  +A          
Sbjct: 58  AGAGAVLWEPAGD-----VAPEPDERTAAERAGVPLIAVPDLGRRLGPIAARLYGDPSAR 112

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF----- 162
             ++ +TG+ GKT+  + L   L         +G+  +  G P +L              
Sbjct: 113 MRVVGVTGTDGKTSVTQYLAQLLDREAHRCGLVGTLGS--GFPDSLQPGTHTTPDAASVQ 170

Query: 163 -----------GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                          + +S     +     VR H AV+T +   HL     +   A AK+
Sbjct: 171 RTLARLHRQGAAQVAMEVSSHALDQHRVAGVRFHTAVLTNLGRDHLDYHGDLAGYAEAKS 230

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +  G+       LN DD+F   +            YS      A  +        +   
Sbjct: 231 RL-FGVPGLQWAVLNLDDAFGRQVHGALAGGTRALGYSLAGHPQAGVRGEGLVLEPQGLR 289

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + +  +     V    +G   A N+L        L   +   ++ L+   P  GR + + 
Sbjct: 290 LRLSTEWGEAPVQAPLLGAFNAANVLAVAAAALSLGVALPVIVERLAGLRPVPGRMEPFT 349

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                        +  A           L+ +  H  G    V G     G         
Sbjct: 350 RPGRPSVIVDYAHTPAA-------LRGALAAVRAHYRGAVWLVFG----CGGDRDRGKRP 398

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH---YSETMDGLFLFIQSSLVD 443
           L    +      V L+           + D + +              G           
Sbjct: 399 LMGEAAAELADRVVLTDDNPRREDPDRIIDDIRQGAPGRDWPVLRDRAGAIRHAVERAGP 458

Query: 444 GDVVVV--KS 451
            DVV+V  K 
Sbjct: 459 EDVVLVAGKG 468


>gi|327399670|ref|YP_004340539.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
 gi|327182299|gb|AEA34480.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelateligase [Hippea maritima DSM 10411]
          Length = 459

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 145/444 (32%), Gaps = 50/444 (11%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
             DSR ++    FFAIKG   D + F+ + + K   ++VV+ +              VDD
Sbjct: 16  VYDSREVSEGFVFFAIKGTKVDANRFVPNILAKFKRVLVVSENGFD-----DERCIKVDD 70

Query: 91  VLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK-----TYACIGSY 143
           V   +   A         K  ++ ITG+ GKTTT  +L     + +             +
Sbjct: 71  VRKCMGLAADHFFNHPSKKLKVVGITGTNGKTTTTYLLRSIFDNSEIIGTTGWTLKDERF 130

Query: 144 NNHIGVPLTLARMPVDVDFGI-----FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
             +   P +L    +     +         +S           V   + V T I+  HL 
Sbjct: 131 KLNNTTPESLDLHRILNRMAMANSEYCFTEVSSHALSFNRIEGVDFALKVFTNISQDHLD 190

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            +  +E  A  K   F   E+     +N DDS+  +L   +         S+G S  A  
Sbjct: 191 FYDNLENYAKTKLSFF---ERLKPKVVNADDSYGRMLIDAA-------TISYGFSDFAFI 240

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +   ++   +    ++ +  +++ +    IG +   N++  LG+      D     + ++
Sbjct: 241 KPIVYEYSLDGIKAKLNVARRTISITSPLIGDYNLYNIMAALGVALFFGVDFARIEEGIA 300

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                 GR + ++              Y     +M+  +  L++I    +GR I V G  
Sbjct: 301 KSKGAPGRLEFFQKDGA-----YAVVDYAHTDDAMRNVLEALNKIK---KGRIITVFGA- 351

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429
              G             ++      V ++  +            + + +     V     
Sbjct: 352 ---GGDRDRTKRPKMGSIAESLSDVVVVTSDNPRSEEPLAIIDDILEGISDRDRVIVEPD 408

Query: 430 MDGLFLFIQSSLVDGD--VVVVKS 451
                         GD   ++ K 
Sbjct: 409 RFEAIKKALGMAEKGDLVTILGKG 432


>gi|118581694|ref|YP_902944.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
 gi|118504404|gb|ABL00887.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pelobacter propionicus DSM 2379]
          Length = 536

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 85/501 (16%), Positives = 149/501 (29%), Gaps = 71/501 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL A+  H +       +  ++ DSR I P   FFA++G   DGHDFI  AVQ G
Sbjct: 24  MKLTQLLAALDSHDLHGDGAVEIKALTCDSRGIVPDSLFFALRGAAMDGHDFIPAAVQAG 83

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTT 122
           A  VV+  +  A     +IP   V D   A+  +A         +  +I ITG+ GKTTT
Sbjct: 84  AVAVVLEDESRA---PAAIPWVRVRDGRSAMAWMAAEFHGNPTSRLPLIGITGTNGKTTT 140

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV----------------DVDFGIFE 166
             ++   L +     A +G+ +   G  +  A                         + E
Sbjct: 141 TYLIEAILRAAGIPAAVLGTISYRFGDTVITASHTTPESTELQAAFTQLAAAGAKAFVME 200

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIF 224
           +  SH  E + +       + + + +   HL     +E    A  +              
Sbjct: 201 V-SSHALEQKRVDGCH-FDVGIFSNLTRDHLDYHVTMESYREAKLRLFSELLKPTADKPL 258

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +   A   A     +  +G     D +  +     +     +     S++V 
Sbjct: 259 RRAAINMDDEQGATVAARAACPVIGYGI-CRGDVRAEELSLSVDGIRARLVTPKGSIDVS 317

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +     L   ++     +       GR        N+   TL+ +
Sbjct: 318 SRLLGRFNLSNILAAVSAGIALDLPLEAIRAGIEGHATVPGR---MERVDNRCGITLLVD 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A      +VL+ +    +GR I V G     G         +   ++       
Sbjct: 375 YAHTGDA----LENVLTTLKELAQGRIITVFG----CGGDRDPGKRPIMGRIAASMSDLA 426

Query: 405 WL------------------------------SGFHVLALKDALPRSIHVHYS--ETMDG 432
            +                                         L       +   E    
Sbjct: 427 IVTSDNPRTEDPFSILEQIRGGITPLGIREYGVDELADRSGKGLAEGADKGFVSLENRRE 486

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
                      GD+V++  K 
Sbjct: 487 AISLAVRLARPGDIVLLAGKG 507


>gi|289168345|ref|YP_003446614.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
 gi|288907912|emb|CBJ22752.1| UDP-N-acetylmuramyl tripeptide synthase MurE [Streptococcus mitis
           B6]
          Length = 481

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 80/505 (15%), Positives = 151/505 (29%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVKEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F++ A+ +G G  V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEFLISAISQGLGWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT        LS    T           G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGKTFFKSSFSTPENIDLFDMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       + E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVKNGRTHLVMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVENQDHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+           + D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMTIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E +P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEAYP 471


>gi|218288150|ref|ZP_03492449.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241509|gb|EED08682.1| UDP-N-acetylmuramyl-tripeptide synthetase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 350

 Score = 97.6 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 60/252 (23%), Positives = 94/252 (37%), Gaps = 17/252 (6%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR + P + + AI+G   DGH FI  AV +GA  VV   D         +P   V     
Sbjct: 6   SREVRPGDVYVAIRGQRADGHAFIGEAVSRGAVCVVGEEDASLVDVPPDVPYVRVTSARR 65

Query: 94  ALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-- 149
           A + L+           T++ +TG+ G TT+   LT  L         + S  N  G+  
Sbjct: 66  AASALSNRVYGFPSRHLTVVGVTGTNGTTTSVHWLTHVLRFAGMRVGMLSSVFNETGLRT 125

Query: 150 ----------PLTLARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                     P     +   VD G     +  S  G ++  T  V   +A+ T +   HL
Sbjct: 126 VPAELTTLEAPKLHRALREMVDAGCTHAVIEVSSHGIVQHRTSDVDFDLAIFTNLTREHL 185

Query: 198 SNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
                +E  A+AKA +F G   +     LN DD + +++     A  +      G  +  
Sbjct: 186 DFHGSMENYAAAKARLFSGLSAEKPGAILNRDDPYADVMAENCVAPIVTYGVRSGDVRGR 245

Query: 257 DFQLRKWKQCSE 268
             + R  +    
Sbjct: 246 GERDRGKRPEMG 257



 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 11/100 (11%)

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK-DALPRSIHVHYSE-- 428
           GD+   GE  +    ++  + +      +  +          +  + L  +  VH +   
Sbjct: 240 GDVRGRGERDRGKRPEMGAIAASLADHVLITTDSSYSEDPERIANEILAGAQRVHRARCD 299

Query: 429 ---TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                            D DV+++        ++++  L 
Sbjct: 300 VVLDRAQAIERAVIEANDEDVILITG-RGHESFQVVGGLR 338


>gi|237749174|ref|ZP_04579654.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
 gi|229380536|gb|EEO30627.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Oxalobacter formigenes OXCC13]
          Length = 503

 Score = 97.2 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/463 (16%), Positives = 143/463 (30%), Gaps = 46/463 (9%)

Query: 27  VNGIS------IDSRSIA--PQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           + GI        DSR I       FFA +G   DG ++I  A++ GA  VV  +      
Sbjct: 14  IKGICPNGQLFSDSREIKYETDAVFFAYEGDSADGRNYIARAIESGAKAVVYESSDFEWN 73

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +   GV  +      +A A         +IIA+TG+ GKT+T + +  ALS + + 
Sbjct: 74  PDWKVDHLGVVGLKANAGPIADAFYGSPARSMSIIAVTGTNGKTSTTQWIAQALSRLGRK 133

Query: 137 YACIGSYNN---HIGVPLTLARMPVDVDFGIF----------------ELGMSHLGEIRF 177
            A IG+        G               +                  +  S +G  + 
Sbjct: 134 TAVIGTLGVSIFENGESGASEETGYTTPDQVQLQRILADLHSREVKCVAIEASSIGIDQG 193

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA+ T     HL     +     A      G +      +N DD+    L +
Sbjct: 194 RLNGLTIDIALFTNFTRDHLDYHHDM-ASYKAAKRRLFGWKGLKHAVVNLDDAMGIELAS 252

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +    T YS      AD  +        ++  +                     N+ 
Sbjct: 253 ELKSKMALTGYSI-NGARADIPVLNAVDIRNRTHGDEFRIESPYGDSKIRTQLIGRFNVS 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             LG++ +L A+      A+           R +    +    ++ + +   P +++  +
Sbjct: 312 NVLGVLGVLLANGIDWDSAVQSLTSLAAPPGRMQQMGGKEAPLVVID-FAHTPDALEKGL 370

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVL 412
           S L  ++    G+   + G     G+       ++ E         + ++          
Sbjct: 371 STLRHVADDRNGKLWCIFG---CGGDRDHGKRPEMGEKAESA--DVIIVTSDNPRSEDPK 425

Query: 413 ALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + + +           E      L         DV+ V  K 
Sbjct: 426 KIMEEIVSGMTKDPIQVEDRATAILTAVKQASKNDVIFVAGKG 468


>gi|289663641|ref|ZP_06485222.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 495

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 75/478 (15%), Positives = 144/478 (30%), Gaps = 44/478 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M+       LL  +      +     V G+ +DSR +AP +AF AI G    G  F+  A
Sbjct: 1   MSRSMALSQLLPDV-----ALPHDVQVCGLVMDSRVVAPGDAFVAIAGFGAHGLGFVEQA 55

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVG 118
              GAG V+       +   +      V  +   L  +A     R      ++ +TG+ G
Sbjct: 56  HANGAGAVLFE-PPAPNGMPVPADAIAVPGLRARLGVMADQFHGRPSHAMRMVGVTGTNG 114

Query: 119 KTTTKEMLTIALSSIKKTYAC-------------IGSYNNHIGVPLTLARMPVDVDFGI- 164
           KT+T ++L  AL+ +                      +   + +P       +  +    
Sbjct: 115 KTSTVQLLAQALTLLGTPTGTLGTLGVGLYGAAVPTGFTTPLVLPTHALLAQLRDEGAQA 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     V   +AV T +   HL     + +  +AKA++F        + 
Sbjct: 175 VAMEVSSHALDQGRVDAVHFDVAVFTNLTRDHLDYHGDMAQYGAAKAKLFTRAGLKAAVV 234

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D     L  +   AL    + S      AD  +       + + +   L  +     
Sbjct: 235 NLDDAFGRTLFASLDPALRAIGVSS---RAQADASVSAQALQLDHNGINFALNIQGEVHP 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H           +     ++   ++  A  A  +   +   G+  R     G   ++ +
Sbjct: 292 VHSPLLGRFNVDNLLAVAGALWALEIAPAQIATVLGQLQPIHGRMNRLGGAHGAPLVVVD 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A        LS +  H + R I V G     G    +        ++  N    
Sbjct: 352 YAHTPDA----LEQALSSLRSHAQDRLICVFG----CGGERDTGKRPQMAAIAELNADVA 403

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +            +     R                        D+V++  K 
Sbjct: 404 IVTDDNPRSEDGDAIVADILRGFARPDAAIVQRDRAAAIHQAIGMASASDIVLIAGKG 461


>gi|332187079|ref|ZP_08388819.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
 gi|332012779|gb|EGI54844.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Sphingomonas sp. S17]
          Length = 476

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 137/409 (33%), Gaps = 28/409 (6%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
             G      V G +ID R +AP   F A +G   +G DFI  AV+ GA  VV        
Sbjct: 10  ITGEGGDALVTGFAIDHRKVAPGTIFGAFQGARVNGEDFIADAVRSGAIAVVT----RPG 65

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +          D+   A  +LA A      AT +A+TG+ GKT+T EM            
Sbjct: 66  VTVEGAVHIASDEPRAAFAQLAAAFFAPFPATAVAVTGTNGKTSTVEMTRQLWRMAGHHA 125

Query: 138 ACIGSYN------------NHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVR 183
           A IG+                  V   L+ +      G+  L    S  G  ++ T  + 
Sbjct: 126 ASIGTLGVTTADERTYTGLTTPDVVTFLSNVAGLAREGVTHLAFEASSHGLTQYRTEGLE 185

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              A  T ++  HL     +    +AK  +F  +       + + D              
Sbjct: 186 VSAAAFTNLSRDHLDYHGDMGAYLAAKMRLFSEVLSPTGTAVVWADDVQSGRVIDLARAR 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + + G   +    + +      Q  +     G   +V    IG + A N L++ G+V
Sbjct: 246 GNRLMTVGTRGSTLKLVERHPTLLGQGLVIEDEHGTIHKVQLPLIGAYQAANALVSAGLV 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                DV T +  LS   P  GR          G    +D ++  +          ++ +
Sbjct: 306 LATGGDVTTTLANLSRLQPVRGR-LERAAIARSGAPVYVDYAHTPDALEA-----AIAAL 359

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            PH  GR I V G     G        +    ++      V ++  +  
Sbjct: 360 KPHAGGRLIVVFGA----GGDRDPGKREAMGQVASMQADRVIVTDDNPR 404


>gi|227833496|ref|YP_002835203.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
 gi|227454512|gb|ACP33265.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Corynebacterium aurimucosum ATCC 700975]
          Length = 500

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 69/464 (14%), Positives = 132/464 (28%), Gaps = 41/464 (8%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V+   ++S ++ P   F A+ G    G  F        A  ++ + +    +  
Sbjct: 3   GDASTSVSSCGLNSAALPPGGLFAALPGTRVHGARFAADTE---AAAILTDAEGKRILND 59

Query: 81  LS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKT 136
                P+  V+D+   L  ++         K TI+ +TG+ GKTTT  +L   L     +
Sbjct: 60  AGEKRPLLVVEDIRAILGAVSAEIYSHPTQKLTILGVTGTSGKTTTSYLLEAGLLHAGYS 119

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLV 182
              IG+    I        +       + E              + +S            
Sbjct: 120 VGLIGTTGTRINREPVPTSLTTPEAPTLQELFARMVSEGVTHVVMEVSSHALSLGRVQGT 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R  +   T ++  HL     +E+   AKA +F+G +      +  DD +   +  ++ A 
Sbjct: 180 RFDVGGFTNLSQDHLDFHPTMEDYFEAKALLFDGPQAADRSVICVDDEWGRRMAQRAAAR 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +  + +  +  +AD   R+       +                     M     +    
Sbjct: 240 PVIRVSTTPQGSDADITGRQLSTEVTGAQQVELTLASGEHAGTFEFRLPMPGTFNIA-NA 298

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-YNANPASMKAAISVLS 361
                      I+        E      R          +    Y   PA++ A +  L 
Sbjct: 299 ALATGMAASIGIEPQVFLEGVEKVAVPGRMERVDRGQDFVAVVDYAHKPAAIAAVLETLR 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
                  GR   V+G     G    S    L    +      V ++  +           
Sbjct: 359 TQLEGSAGRIGIVVGA----GGDRDSSKRPLMGAAAAKGADLVVVTDDNPRTEDPASIRA 414

Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              A       +  +    +       + +    GD V+V  K 
Sbjct: 415 AVLAGAQEANPAADIREVGSRAKAIDEVVAWAQPGDAVIVVGKG 458


>gi|313888807|ref|ZP_07822468.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845176|gb|EFR32576.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 517

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 139/356 (39%), Gaps = 14/356 (3%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPV 158
              +      ++ ITGS GKT+ K +    LS   +      S+N  +G+   +   +  
Sbjct: 159 KKYKEEEGLKVLGITGSFGKTSVKFISDTILSEGLRVKNTPSSFNTPMGLSKIINNELER 218

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D +  I ELG    GEI  +  LV+P I +IT I P H+  F  IE I   K E+ E L 
Sbjct: 219 DREVFIAELGAKVPGEIHEVAELVQPDIGIITAIGPTHMHLFKTIENIQKTKYELIEDLP 278

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G    NYD+ + + L  K+        Y +G        +   +    ++  E  L  
Sbjct: 279 EDGIAIFNYDNDYVKPLADKTKK----KTYRYGTKDFDKLDVYADEIKVNETGSEFVLHI 334

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K    +          N+   L   +       +  +        E    R     +   
Sbjct: 335 KGGGEIKCSTRLLGVHNISNLLAAATAAHVLGLSLEEIQRGISKVEPVEHRLSLIPSSNN 394

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID+++N+NP   +AA+ VL +   H +   I +   M E+G++ +  +  + +V++ 
Sbjct: 395 TIVIDDAFNSNPVGFRAALDVLREFKDHRK---IIITPGMVELGDMEEEENRKIGQVMAD 451

Query: 399 YNISHVWLSGF-HVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    L G    L + + L         ++   ++D     +    + GDVV+ 
Sbjct: 452 V-LDFAILVGKKRTLPIYEGLKDKNFDEEKIYRVSSLDEATKVLAKISMAGDVVLF 506


>gi|299143292|ref|ZP_07036372.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517777|gb|EFI41516.1| D-alanyl-D-alanine-adding enzyme [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 511

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/361 (21%), Positives = 137/361 (37%), Gaps = 16/361 (4%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +     +      ++ ITGS GKT+ K +    LS   +      S+N  +G+   +  
Sbjct: 149 QEKIRNYKENYDLKVLGITGSFGKTSVKFISNTILSEGLRVKNTPSSFNTPMGLSKIINN 208

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    +  I ELG    GEI  +  LV+P+I +IT I P H+  F  I+ I + K E+ 
Sbjct: 209 ELENTTEVFIAELGAKKRGEIEEVAALVQPNIGIITAIGPTHMHLFKTIDNIQNTKYELI 268

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME- 273
           E L + G    NYD+ + + L  K+        Y     +  D            S    
Sbjct: 269 EMLPENGVAIFNYDNDYVKPLADKTEIK--TIRYGIKDVEKLDVYATDISVDEMGSKFIL 326

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +   +E     +G H   N+L       IL   ++     +    P E R       
Sbjct: 327 HIRELGEIECESKLLGVHNISNLLAAASSAYILGLSLEQIANGMKKVEPVEHRLNI---V 383

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +     +ID+++N+NP       + L  IS   +GR+I +   M E+G++ +  +  + 
Sbjct: 384 NSNSGVIVIDDAFNSNPIGF---RAALDVISEFKDGRKIIITPGMVELGDMEEEENYKIG 440

Query: 394 EVLSLYNISHVWLSG-FHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++      V L G      +   L  +     +V    +++     +       DVV+
Sbjct: 441 FEIAKT-CDFVILVGKKRTAPIYRGLEDAKYNLENVFRVNSLNEATQVLGHLSAPKDVVL 499

Query: 449 V 449
            
Sbjct: 500 F 500


>gi|168487500|ref|ZP_02712008.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183569676|gb|EDT90204.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 481

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLVWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471


>gi|149011768|ref|ZP_01832964.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182684487|ref|YP_001836234.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|303255316|ref|ZP_07341386.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|303260157|ref|ZP_07346129.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|303262547|ref|ZP_07348488.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|303264949|ref|ZP_07350864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|303267258|ref|ZP_07353122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|303269569|ref|ZP_07355332.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|147764199|gb|EDK71131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP19-BS75]
 gi|182629821|gb|ACB90769.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CGSP14]
 gi|301802248|emb|CBW35000.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV200]
 gi|302597684|gb|EFL64760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS455]
 gi|302636264|gb|EFL66758.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS292]
 gi|302638654|gb|EFL69117.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP-BS293]
 gi|302640913|gb|EFL71297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS458]
 gi|302643223|gb|EFL73506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS457]
 gi|302645468|gb|EFL75700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae BS397]
 gi|332073868|gb|EGI84346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41301]
          Length = 481

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471


>gi|221232241|ref|YP_002511394.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225854970|ref|YP_002736482.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae JJA]
 gi|220674702|emb|CAR69275.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae ATCC 700669]
 gi|225723162|gb|ACO19015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae JJA]
          Length = 481

 Score = 97.2 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVRRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVKDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471


>gi|148997407|ref|ZP_01825012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|168575274|ref|ZP_02721237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|307068174|ref|YP_003877140.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
 gi|147756462|gb|EDK63503.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP11-BS70]
 gi|183578907|gb|EDT99435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae MLV-016]
 gi|306409711|gb|ADM85138.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus pneumoniae
           AP200]
          Length = 481

 Score = 97.2 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL  KS A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMEKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|226953732|ref|ZP_03824196.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|294651781|ref|ZP_06729079.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835520|gb|EEH67903.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter sp. ATCC
           27244]
 gi|292822338|gb|EFF81243.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 499

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 75/461 (16%), Positives = 142/461 (30%), Gaps = 55/461 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              G S+DSR +   + F A+    +        F  +A+  GA  V+    +  +    
Sbjct: 21  PFQGFSLDSRKVEKGQIFIALSSYSQPEKT--RQFAQNALDAGALAVISEATLGVTNE-- 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATI----IAITGSVGKTTTKEMLTIALSSIKKTY 137
               +   DV   + +                 +A+TG+ GKTT   ++   L S +   
Sbjct: 77  ----WVCPDVRYQMGEWQKQYLQAVDPVQPICGVAVTGTNGKTTISRLI-AELISSQGKG 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHLGEIRFLTHLV 182
             +     +  +P         +D                    L  S  G  +   +  
Sbjct: 132 CAVMGTTGNGILPNLTPSTHTTLDALQLQHALHDYAKLGARFVALEASSHGLEQGRLNGC 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV + ++  HL     +E  A AKA +F+       +    D     +L A     
Sbjct: 192 DLEIAVYSNLSRDHLDYHGTLEAYAEAKARLFKFTTLKAVVINLDDAYAQLMLDAAKANP 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               I ++  ++ A        +          L       VH  +  H     L+   I
Sbjct: 252 SQPKILTYSLTQAAADYHIDALEYRLSGANFTLLAPTGSYAVHSPLLGHFNVENLLASLI 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +         +  +      +G   R +   +     ++D ++  +       I VL+ 
Sbjct: 312 AAECAGFDLADL--VEFVPQLQGAPGRMQVIQDANRLFVVDYAHTPDA-----LIQVLTT 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           +  H  G+  AV G     G         L    +L + + V L+  +            
Sbjct: 365 LKRHVTGQLWAVFG----CGGDRDRGKRPLMTQAALDHANPVILTSDNPRTEDQAQIFAD 420

Query: 414 LKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +K  +  + H+ H          F+ +    GD+VV+  K 
Sbjct: 421 MKQGMNFTEHLMHEIHDRREAIKFVVAQAQAGDIVVIAGKG 461


>gi|262380447|ref|ZP_06073601.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
 gi|262297893|gb|EEY85808.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter
           radioresistens SH164]
          Length = 499

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 71/475 (14%), Positives = 148/475 (31%), Gaps = 55/475 (11%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKGAGLV 68
           +   G++         +G  +DSR +   + F A+       +    F  +A+ +GA  +
Sbjct: 7   EIYPGNANVEWANQPFSGFCLDSRKVQAGQIFIALD-SLSHSNKTRIFAENALSQGALGI 65

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----TIIAITGSVGKTTTKE 124
           +  +D+  +        +    V   +          ++      I+A+TG+ GKTT   
Sbjct: 66  ISESDLGVTTA------WVCPQVRQWMGGWQKQYLQATQPVNSARILAVTGTNGKTTISR 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGM 169
           ++   L S +K    +     +  +P  +A     +D                    L  
Sbjct: 120 LI-AELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGANFVALEA 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  +         IA+ + ++  HL     +   A AKA +F+       +    DD
Sbjct: 179 SSHGLEQGRLDGCEIEIAIYSNLSRDHLDYHGTLAAYADAKALLFKFATLRSAVINLDDD 238

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +L+          I ++       D+++       E +  ++        V    +
Sbjct: 239 YAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLEGAKFKLIAPTGEYVVQSPLL 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G    +N++ +L  V      +   +  +       GR +  R          + +  + 
Sbjct: 299 GQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDVER----LFVVDYAHT 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A       VL  +  H + +  A+ G     G         L    +L +   V L+ 
Sbjct: 355 PDA----LTQVLVTLKRHVQNQLWAIFG----CGGDRDRGKRPLMTQAALNDADPVILTS 406

Query: 409 FHVL-----ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +        +   +   +     HV           +       GD+VV+  K 
Sbjct: 407 DNPRTESPEQIFADMKNGVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAGKG 461


>gi|15901375|ref|NP_345979.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae TIGR4]
 gi|111658373|ref|ZP_01409060.1| hypothetical protein SpneT_02000452 [Streptococcus pneumoniae
           TIGR4]
 gi|21362711|sp|Q97PS1|MURE_STRPN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14973020|gb|AAK75619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TIGR4]
          Length = 481

 Score = 96.9 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL  KS A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMEKSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|227548908|ref|ZP_03978957.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079036|gb|EEI16999.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 545

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/482 (12%), Positives = 137/482 (28%), Gaps = 53/482 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQ----GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            H+L +                  ++ + +++R +AP   F A+ G    G  F   A +
Sbjct: 19  LHELARIAGADVASSADNGWAGVAISSVGLNAREVAPGGLFAALPGTRVHGAQF---AAE 75

Query: 63  KGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV--- 117
             A  ++ + + +  + +     PV  VDDV   L +++          +  I  +    
Sbjct: 76  SPARAILTDREGLDIVEAAGDRRPVLVVDDVRAVLGEVSAHVYGHPSRRMTLIGVTGTSG 135

Query: 118 --------------GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                                + T       +      +      +    ARM  +    
Sbjct: 136 KTTTTYLLERGLIAAGAQVGLIGTTGTRIRGRDVPTSLTTPEAPTLQALFARMAAEGVTH 195

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +  + +S                A  T ++  HL     +++   AKA  F+        
Sbjct: 196 VV-MEVSSHALSLGRVDGTSFDAAGFTNLSQDHLDFHPTMDDYFQAKAAFFDPSSPVAAS 254

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                       +    A     + + G+            + +    +E+++ G++ E 
Sbjct: 255 ASVVCVDDEWGERMAELASHPLRVGTHGQEGLDCSARLTAVRDNGAQDIELRIDGQTHEF 314

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N  +   +  ++ AD+   ++ L             R    Q F  ++D
Sbjct: 315 TLPLPGAFNVANAALATALARVVGADMPQFVRGLENAAVPGR---MERIDAGQDFVAVVD 371

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++     +      VL  +    +GR    +G     G    +    +    +      
Sbjct: 372 YAHKPAAIAA-----VLETLREQVDGRIGIAVGA----GGDRDTTKRAVMGQQAATRADL 422

Query: 404 VWLSG-----FHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           V ++          A++ A             +            + +  + GD +VV  
Sbjct: 423 VIVTDDNPRTEDPAAIRAAVLRGAREAGSGAEIRECGPRAEAIDQLVAWALPGDAIVVVG 482

Query: 450 KS 451
           K 
Sbjct: 483 KG 484


>gi|225861361|ref|YP_002742870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230737|ref|ZP_06964418.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254942|ref|ZP_06978528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503266|ref|YP_003725206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727392|gb|ACO23243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238861|gb|ADI69992.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae TCH8431/19A]
 gi|327389716|gb|EGE88061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA04375]
          Length = 481

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS    T           G     +      +  +F++   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQ 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R    +     A +          +    ++        + +             
Sbjct: 174 AVKNGRSHLVMEVSSQAYLV------HRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|327479638|gb|AEA82948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri DSM 4166]
          Length = 487

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 74/466 (15%), Positives = 163/466 (34%), Gaps = 43/466 (9%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           +            +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   ++
Sbjct: 5   LNYLLPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESE 64

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
            +    + +  +  V  + G L+ +A            ++ +TG+ GKT+  +++  AL 
Sbjct: 65  GLDQALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALD 124

Query: 132 SIKKTY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            + +                     +  + IGV  TLA++  +    +  + +S  G  +
Sbjct: 125 RLGEPCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVA-MEVSSHGLDQ 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   +AV T ++  HL     +E   +AKA +  G+       +N DD F   L 
Sbjct: 184 GRVAALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARL-FGVPGLSCRVINLDDGFGRALA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     + +     +  +A     + +   +     +        +    +G     N+
Sbjct: 243 GEERESRLISY--SLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNV 300

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G +  +   +D  +  L       GR    R         ++D ++  +       
Sbjct: 301 LAAVGALLGMDYPLDEILAVLPELEGPAGR--MQRLGGGDRPLVVVDYAHTPDALE---- 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412
             VL+ + PH  GR + + G     G    +    L   ++      V ++  +      
Sbjct: 355 -KVLTALRPHARGRLLCLFG----CGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAP 409

Query: 413 -----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 ++        V + +        + ++    DVVV+  K 
Sbjct: 410 ERILDDVRSGFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455


>gi|163841234|ref|YP_001625639.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
 gi|162954710|gb|ABY24225.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Renibacterium salmoninarum ATCC 33209]
          Length = 541

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 79/491 (16%), Positives = 160/491 (32%), Gaps = 56/491 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L +           +  V GIS+DSR+I P + + A+ G    G  F   AV  GA 
Sbjct: 25  LTELARFCGIEL---DSKLQVTGISLDSRTILPGDLYLALPGDRVHGAKFAASAVAAGAV 81

Query: 67  LVVVNTD---MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            ++ +     + ++     +PV GV +       LA     R    +  +TG+ GKTTT 
Sbjct: 82  AILTDRAGAQIASAEVPQHVPVLGVAEPRALAGPLAAKIYQRPHLDLFGLTGTNGKTTTS 141

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
            ++   L++++++   IG+     G                  L       ++   + E+
Sbjct: 142 YLIRSILAALERSSGLIGTIEMLAGETVIPSTLTTPEATDVHALVALMAEKNLGSVVMEV 201

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH      +  LV   +A  T +   HL     + E A+ KAE+F        +    
Sbjct: 202 -SSHALAYGRVDGLV-FDVAGFTNLTQDHLDLHGTMAEYAATKAELFSSRRSKRAVVTVD 259

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------KQCSEQSWMEVQLQGK 279
           D  +   + A++    ++      ++   D    +             E    E     +
Sbjct: 260 DQ-WGRQIAARADVPVLRLQIQPTETPLEDPSDWRVLKSEPLGLGWRIELHGFEADGAER 318

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S +      G     N  + + +V     D     +AL    P           ++Q   
Sbjct: 319 SFKFTTSLPGEFNIANSALAVLMVYASGVDTGALQRALDEHDPLSINVPGRMQLISQEPV 378

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++N +  +++ A+  +   +    GR I V G   +           +   L+  
Sbjct: 379 AVVDFAHNPD--ALQRAMDAVRPNNNETRGRLITVFGATGQ----RDQTKRPIMGALAAR 432

Query: 400 NISHVWLSGFHV---------LALKDALPRSIHVHYSET-------MDGLFLFIQSSLVD 443
               V ++               + D   +++     +T                +    
Sbjct: 433 GSDVVIITDDDPHDEDPEQIRDQVFDGAAKAVKAGQLDTVLELVAPRAAAIDRAVALAGK 492

Query: 444 GDVVVVKSSNS 454
            D +++     
Sbjct: 493 DDAILIAG-RG 502


>gi|149927127|ref|ZP_01915384.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
 gi|149824066|gb|EDM83287.1| UDP-N-acetylmuramyl-tripeptide synthetase [Limnobacter sp. MED105]
          Length = 498

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 152/481 (31%), Gaps = 52/481 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQEAFFAIKGPHYDGHDFILHAV- 61
           L +  ++L                +G+  D R +  P++ F A+ G  +D  +     + 
Sbjct: 6   LHSVSEVL----AELHERGFYADCSGLVTDHRRLTGPRDVFLAVPGEKFDPRNLADDLLT 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
           ++  GLV+V+          S  V  V  +   L  LA           TIIA+TG+ GK
Sbjct: 62  EQRCGLVLVD--YDDQRAYQSASVLPVLHLKTMLADLAFGYYETPSDAMTIIAVTGTNGK 119

Query: 120 TTTKEMLTIALSSI----------------KKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           TT    L  +L+ +                +       +  + +GV   L  +       
Sbjct: 120 TTVTRWLAQSLNQLGKKAAVIGTLGYGEPDQLKAHTGLTTPDVVGVHHLLHELRQAGFDT 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           +  +  S +G  +     V   +A+ T ++  HL     +     +K  +         +
Sbjct: 180 VC-IEASSIGLEQRRLACVSIDVALFTNLSQDHLDYHGDMAAYGRSKMILASWPTLRLAV 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D    E L             + G    AD Q+       +   +E+++ G   ++
Sbjct: 239 VNADDSFGVEFLA--HVQHRNIDCSAVGHVSTADCQIVSVAHQEKGQRIELKINGAITQI 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG   A NM +    +  L  D     +AL+   P  GR +             + 
Sbjct: 297 DTPIIGEFNADNMALVFATLVRLGYDASEVKRALAGVTPAPGRMQHIEGEP------AVV 350

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++  +  L   +    G+   V G     G         L    ++     
Sbjct: 351 VDYAHTPDALEKTLLALRPFANKRMGKLWVVFG----CGGDRDRSKRPLMGAAAVAKADF 406

Query: 404 VWLSGFHVLA-----LKDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           V L+  +  +     +   +   I      ++H          F        DVV++  K
Sbjct: 407 VVLTSDNPRSEKPETILQEIIAGIDAPLQNNIHVEVDRPVAIEFAVRKANAQDVVLLAGK 466

Query: 451 S 451
            
Sbjct: 467 G 467


>gi|148984878|ref|ZP_01818131.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922900|gb|EDK74016.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800363|emb|CBW32994.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae OXC141]
          Length = 481

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLCLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|269216477|ref|ZP_06160331.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
 gi|269130006|gb|EEZ61088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Slackia exigua ATCC 700122]
          Length = 505

 Score = 96.9 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 77/485 (15%), Positives = 150/485 (30%), Gaps = 54/485 (11%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L +  D + A       + P   V G+SIDSR++ P+  F A KG  +    ++  A+
Sbjct: 9   TTLSSLADAIAAQGVKIRLVGPDRPVRGMSIDSRAVGPEALF-ACKGAAFKP-AYLEDAL 66

Query: 62  QKGAGLVVVNT--DMVASIGSLSIPVFGVDDVL--GALNKLAVAARLRSKATIIAITGSV 117
             GA   + +   +   S  +  +     DD+    A    A   R   +  I+ ITG+ 
Sbjct: 67  NAGAAAYLCDESSEPDLSAHAEGVSHLVTDDIRPAMAYAARAAYGRPDKRIDIMGITGTK 126

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVD 161
           GK+TT  +L    ++     + IGS     G                             
Sbjct: 127 GKSTTSFLLKSIFAAAGMRPSIIGSIETDDGIDAFESHNTTPEAVDLWRHVFNTAESGRK 186

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219
             + E+  SH  +      L+   +A    I   H+S       E+  ++K  IF+    
Sbjct: 187 HLVMEV-SSHALKYDRTLGLM-LDVACFLNIGRDHISPSEHPSFEDYFASKLRIFDQCRT 244

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +           +      + + +FG     AD+  R  + C +    ++  +G
Sbjct: 245 AVVNLDSDLVDEVLEHARR-----AERLLTFGVDRPEADYSARDVRPCRDGIAFDLACEG 299

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +  +     G   A+N L  + +  I     +     L+                +   
Sbjct: 300 GARPMTLGMAGLFNAENALAAIAMARIAGIGFEDIASGLAHVRVPGR----MEVVRSAAG 355

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T+    Y  N  S K   + +     H   + +AV G              ++   ++ 
Sbjct: 356 STIALVDYAHNELSYKTFFTSVR--KEHLAAKVVAVFGAPG----DKAFERREVLPRVAA 409

Query: 399 YNISHVWLSG-----FHVLALKDALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV-- 447
               ++  +          A+ + L  +             +   +       + D V  
Sbjct: 410 QFADYLIYTEEDPAHEDPRAIAEELAANTPADTPCEIIVDREQAIIRAFEVAGENDAVVC 469

Query: 448 -VVKS 451
            + K 
Sbjct: 470 LLAKG 474


>gi|297194886|ref|ZP_06912284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152507|gb|EFH31800.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 431

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 135/410 (32%), Gaps = 31/410 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +    +       + GI+ DSR++ P + + A+ G  + G DF   A   GA 
Sbjct: 32  LGELAARLG---VQTPGAAEITGITHDSRAVRPGDLYAALPGARFHGADFAAQAADLGAA 88

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +PV   ++  G + +LA             I ITG+ GKTTT  
Sbjct: 89  AVLTDESGAERAAATGLPVLVTENPRGRMGELATEIYGHPGDDLLQIGITGTSGKTTTAY 148

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L +  ++   IG+    IG     +    P   D       M   G       + 
Sbjct: 149 LVEGGLKAAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGADAVAMEVS 208

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          IAV   ++P H+   S +E+   AKA++F    ++    +N+DD 
Sbjct: 209 SHALVLGRVDGCVFDIAVFNNLSPEHMEFHSDMEDYFQAKAQLFT-PRRSREAVVNFDDE 267

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L  +  A    T +S     +AD++    +  +  S                 +  
Sbjct: 268 YGRRLVDE--ATVPVTTFSAEGHPDADWRAEDVEVGTHGSTFTAVGPAGERVRAQAPLPG 325

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                  +   +   +         A        G   R         +  + +  +   
Sbjct: 326 PFNVANTLAAVVTLAVA--GLDPQTAADGIAAVPGVPGRLERVDAGQPYLAVVDYAH--- 380

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               A  SVL  +    +G+   VLG     G+  ++    +    +   
Sbjct: 381 -KTDAVESVLRSLRKVTKGKVHIVLG---CGGDRDRTKRGPMGAAAARNG 426


>gi|300788102|ref|YP_003768393.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
 gi|299797616|gb|ADJ47991.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Amycolatopsis mediterranei U32]
          Length = 514

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 84/486 (17%), Positives = 159/486 (32%), Gaps = 57/486 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQG---FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL T   L +A     I   P      V G ++ ++ + P + F A+ G    G DF   
Sbjct: 17  PLATL--LARA-DARLIAGSPDAAELTVTGTTLRAQHVLPGDLFAALPGARAHGADFSDQ 73

Query: 60  AVQKGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           AV  GA  V+ +       ++    +P+    D   AL ++A           +++ +TG
Sbjct: 74  AVAAGAVAVLTDAAGAERPALRDAGVPILVHPDPRAALGEIAAWIYGEPSLELSVLGVTG 133

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFG 163
           + GKTTT  ++   L +   T   IG+                   P   A + V ++ G
Sbjct: 134 TSGKTTTSYLVDAGLQAAGLTTGLIGTVETRIAGDRLVSGFTTPEAPDLQALLAVMLERG 193

Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +  + M  S         +  R  +   T ++  HL     ++E  +AK+ +F+G     
Sbjct: 194 VTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMQEYFAAKSLLFDGRSTHE 253

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + ++         +A      I      G          +     EQ++      G   
Sbjct: 254 VVVVDSAWG-----QALLTPQTITVTTDPGTEAAWKATDLEATPQGEQTFTLHGPDGARA 308

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N ++   I+S     ++  +  L+     +  G+  R  + Q F  +
Sbjct: 309 AARIPLPGEFNVANAVLAAAILSTAGVSLEHIVAGLAQ---VQVPGRMERVHVGQEFTAV 365

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++     +       L  +    EGR I VLG     G    +    +    +    
Sbjct: 366 VDYAHKPAAVA-----QGLDALRARTEGRIITVLG----CGGDRDTAKRPIMGEAAARRS 416

Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + ++          A++ A+              +              S    GD+V
Sbjct: 417 DVLIVTDDNPRSEDPAAIRAAMLAGARSVGPAEGGEILEIGDRREAIAHAVSLAGPGDIV 476

Query: 448 VV--KS 451
            +  K 
Sbjct: 477 FLAGKG 482


>gi|92116830|ref|YP_576559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
 gi|91799724|gb|ABE62099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitrobacter hamburgensis X14]
          Length = 485

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 65/450 (14%), Positives = 129/450 (28%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V G+++DSR + P + FFA+ G   DG  FI  A+        V      +     +
Sbjct: 19  ELAVTGLAVDSREVKPGDLFFALAGTKTDGARFIDAAI----AAGAVAVVGDHAPAGACV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------- 136
           P     +   AL   A     R  ATI A+TG+ GKT+           +          
Sbjct: 75  PSVATSNPRRALALAAAKFYPRQPATIAAVTGTSGKTSVAAFTRQIWQRLGHPSASIGTI 134

Query: 137 -YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVI 189
                               +  ++D  + E      L  S  G  ++    VR   A  
Sbjct: 135 GVVAPSRAVYGSVTTPDPISLHRELDQLVGEGVTHLALEASSHGLDQYRLDGVRVRAAGF 194

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  H+     +      K  +F  L +   + +   D        ++ +     I  
Sbjct: 195 TNLSRDHMDYHPTVAHYLDTKLRLFRDLVEPDGVAVISADHDCSGTVIEAASARNVRIMR 254

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+  +      +      + + +      +       +       +   L    ++   
Sbjct: 255 VGRRGDGTHSGIRLADAVIEGFAQRVTLEHAGRERIIRLPLVGEFQIENALVSAGLVIGT 314

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A +  +     EG   R      +    +  +  +   A        L  + P+   
Sbjct: 315 GGDADQVFAALEHLEGAKGRLELVGERNGAPVFVDYAHKPDA----LAKALQALRPYASR 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIH 423
           + + V G     G    +    L   ++  N   V ++  +  +          L  +  
Sbjct: 371 KLVVVFGA----GGDRDAGKRPLMGEVAAANADVVIVTDDNPRSENPAAIRAAILAAATG 426

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            L  GD +++  K 
Sbjct: 427 AREIGDRAEAIRTAIVGLQPGDALLIAGKG 456


>gi|306829834|ref|ZP_07463021.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
 gi|304427845|gb|EFM30938.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis ATCC 6249]
          Length = 481

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 72/496 (14%), Positives = 151/496 (30%), Gaps = 52/496 (10%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  ++L+           G           + IS DSR +  +  FF +KG  + 
Sbjct: 1   MIKIETVLNILKKNGLFREIINQGSYYYNYSDVDFDSISYDSRKVKERSLFF-VKGASFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+L A+ +G    +   D       + IP   V+D+  A++ +A+      + K  I
Sbjct: 60  -KEFLLSAISQGLDWYIAEQDY-----EVGIPAIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        L+   +            G     + +       +F++   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILAQHHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMAQ 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R    +     A +          +    ++        + +             
Sbjct: 174 AVHNGRTHLIMEVSSQAYLVK------RVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----- 285
              LL   S A+ I +            + ++      QS  +++               
Sbjct: 228 HKRLLMENSRAVVINSDMDHFSVLKEQVEDQEHDFYGNQSSNQIENSKAFGFSATGKLAG 287

Query: 286 -HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + I      N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIQKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVV--KSS-N 453
           +L+         +A+ + +    S  V      +       +      D V++  K +  
Sbjct: 400 FLTADDPNYEDPMAIAEEISSYISHPVEKIADREQAIQAAMAITDQELDAVIIAGKGADR 459

Query: 454 SCGFYRLINLLLEEFP 469
                +++N + E +P
Sbjct: 460 Y----QIVNGVKESYP 471


>gi|145595732|ref|YP_001160029.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora tropica
           CNB-440]
 gi|145305069|gb|ABP55651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salinispora tropica CNB-440]
          Length = 514

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 82/471 (17%), Positives = 150/471 (31%), Gaps = 49/471 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
             A+         +  V G++  S+ + P + + A+ G    G +F+  A + GA  V+ 
Sbjct: 28  ADAVD--LRPGPTEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVSAAARAGAVAVLT 85

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTI 128
           + D  A+   + +P+  V D    L  LA           T+I +TG+ GKT+T  ++  
Sbjct: 86  DPDGAAATAEVDLPMLVVPDPRAVLGDLASVVYGDPTAGLTVIGVTGTAGKTSTAYLVES 145

Query: 129 ALSSIKKTYACIGSYNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV---- 182
            L +   T   IG+    +G  V  ++   P   D           G    +  +     
Sbjct: 146 GLRAAGHTTGLIGTVETRLGDLVVDSVRTTPEATDLHAMLAAARERGVTAVVMEVSSHAL 205

Query: 183 --------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   R  +   T     HL   +   +  +AKA++F+G  +     LN+DD     
Sbjct: 206 AMGRVGGVRFTVGGYTNFGSDHLDFHADSVDYFAAKAKLFDG--RCEVEVLNHDDPALLP 263

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L    H     T  + G      +      +   Q +      G ++       G H   
Sbjct: 264 L----HRPATVTYSAAGDGAATWWADEAGGEGYAQRFTLHGPDGLTLPAGVALPGRHNVA 319

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L+ + ++        TA+  ++      GR +                          
Sbjct: 320 NALLAVAVLVAAGVAPRTAVAGVADCGGVPGRLELVPSPGPVRGVVDYA-------HKTD 372

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----F 409
           A ++ L+ +     GR I +LG     G         L  V +      V ++       
Sbjct: 373 AIVAALAALREFSTGRLICLLGA----GGDRDRGKRPLMGVAAAEGADVVLVTDDNPRTE 428

Query: 410 HVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVV-VV-KS 451
               ++  +   +        V                   GDVV ++ K 
Sbjct: 429 DPADIRAEVLAGVRRADTEAQVLEVPGRRAAIAEAVQLAAPGDVVALLGKG 479


>gi|309776031|ref|ZP_07671023.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916313|gb|EFP62061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 476

 Score = 96.5 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 149/476 (31%), Gaps = 62/476 (13%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           N L+T                    +  GIS D+R +     F   +G  YDG  F+  A
Sbjct: 7   NELFTL----------LHIPCEDTRILQGISDDTRDLKKDWLFVCRRGSAYDGATFLQEA 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
           + KGA  V+ +  +       +     V+ +  AL +L          +  +I +TG+ G
Sbjct: 57  LDKGAV-VLCDEPLKQEHVYYTP---YVERIRQALLEL---YYGDLCARLHVIGVTGTNG 109

Query: 119 KTTTKEMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KT+   +++  L+                    I  +N   G           V  GI  
Sbjct: 110 KTSVASIISQLLAMEDCAVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAVQTGITH 169

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +     ++    V T I   HL            K ++   L+  GTI 
Sbjct: 170 VVMEVSSHAIDQNRISFLQFDDIVYTNITQDHLDYHLSRVHYRYTKFKLRRYLKPQGTII 229

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N D S+ + L   +    I           ++ QL                +   M  V
Sbjct: 230 YNSDLSYMQELVNLAQHTCISIGMQAAHFPLSEVQLSAHDLSFHLQGYAFHARLLGMVNV 289

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N+   + +V       +  ++      P  GR +          FT+  +
Sbjct: 290 ---------YNLAEAIVVVHRTGCSYERLVQDCEQLKPVSGRMEVMEVGG----FTIWID 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A       +L   +   +GR + +LG     GE  ++    +A + + Y+   V
Sbjct: 337 YAHTASA----VKELLLFANSVKKGRILTILG---CGGERDRTKRPQMAAIAAAYSDIAV 389

Query: 405 WLS----GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
           + S    G  V  +   +      +    E              + D++++  K S
Sbjct: 390 FTSDNPRGESVADILQDMKCESFSNAVVFENRYFAIKHTIKVAQNSDIIIIAGKGS 445


>gi|159038983|ref|YP_001538236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
 gi|157917818|gb|ABV99245.1| UDP-N-acetylmuramyl-tripeptide synthetase [Salinispora arenicola
           CNS-205]
          Length = 515

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 80/482 (16%), Positives = 148/482 (30%), Gaps = 53/482 (10%)

Query: 7   FHDLLQAIQGH-------SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             DL   +                +  V G++  S+ + P + + A+ G    G +F+  
Sbjct: 15  LGDLADRLAAEPDAGTVNLRPGPSEPTVTGVTHASQEVRPGDLYAALPGARRHGAEFVPA 74

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
           A + GA  V+ +    ++     +P+  V D    L  LA A          +I +TG+ 
Sbjct: 75  AARAGAVAVLTDPAGASATAQAGLPMLVVPDPRAVLGDLASAVYGDPTAGLAVIGVTGTA 134

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVD-VDFGIFELGMSHLGEI 175
           GKT+T  ++   L +       IG+    +G + +   R   +  D           G  
Sbjct: 135 GKTSTAYLVESGLRAAGHVTGLIGTVETRLGDLAMDSVRTTPEATDLHAMLAAARERGVT 194

Query: 176 RFLTHLV------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
             +  +             R  +   T     HL       +  +AKA++F+G  +    
Sbjct: 195 AVVMEVSSHALAMGRVGGVRFTVGGYTNFGSDHLDFHVDSADYFAAKAKLFDG--RCEVE 252

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN+DD     L  ++         ++  + +            E       L G     
Sbjct: 253 VLNHDDPALRPLYRQA-------TVTYSAAGDRSATWWADAVGGEGYAQRFTLHGPDGLA 305

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +  G+      N+   L  +++L A    A  A +      G   R       G    + 
Sbjct: 306 LPAGVALPGRHNVANALLAIAVLVAAGVDAKTAAAGVAACGGVPGRLELVRAPGPVRGVV 365

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +       A ++ L+ +   G GRR+  L      G         L  + +      
Sbjct: 366 DYAH----KTDAIVAALAALREFGAGRRLICL---LGAGGDRDRGKRPLMGIAAAEGADV 418

Query: 404 VWLSGFH----------VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVV-VV- 449
           V ++  +             L  A        V                   GDVV ++ 
Sbjct: 419 VVVTDDNPRTEEPAEIRAEVLAGAYRAGTDARVLEVPGRRAAIAEAVRLAEPGDVVALLG 478

Query: 450 KS 451
           K 
Sbjct: 479 KG 480


>gi|228474345|ref|ZP_04059080.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|314936777|ref|ZP_07844124.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
 gi|228271704|gb|EEK13051.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Staphylococcus hominis SK119]
 gi|313655396|gb|EFS19141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Staphylococcus hominis subsp. hominis C80]
          Length = 494

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 71/445 (15%), Positives = 134/445 (30%), Gaps = 40/445 (8%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           SR+ + +  F A KG   D H F  + + +G  ++VVN           +    V D L 
Sbjct: 30  SRTASGESIFVASKGYTVDSHRFCQNVIDQGTKIIVVNRKQEVKGE---VTQVIVPDTLR 86

Query: 94  ALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIAL--------------SSIKKTY 137
             + LA         + T   +TG+ GKT+   M+ +                  I +  
Sbjct: 87  VASILAHTLFDYPSQQLTTFGVTGTNGKTSIATMIHLIYRGLDKNSAYLGTNGFQINEEK 146

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               +      +     +  VD       + +S  G        V   +AV + +   HL
Sbjct: 147 TKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSSHGLALGRLRGVEFDVAVFSNLTQDHL 206

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +E    AK+ +F  L +  +       +  +        +    I ++G    A 
Sbjct: 207 DFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNNDDDFSKYLETVTPYEILTYGIDNEAQ 266

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F  +  K+  + +  +      +  V    +G     N++  +  V     D    ++ +
Sbjct: 267 FMAQNIKESLQGAQFDFATPFGTYHVSSPYVGKFNISNLMAAMIAVWSKGIDFKDIVEVV 326

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
               P EGR       L+      +   Y      M   I  +           +  L  
Sbjct: 327 KSLEPVEGRL----EVLDPSLPIDLIIDYAHTADGMNKLIDAVQPFVKQK----LIFLVG 378

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHY--SET 429
           M   GE   +   ++          +V  +  +           +    + H +Y   E 
Sbjct: 379 MA--GERDLTKTPEMG--AVACRADYVIFTPDNPADDDPKMLTAELAKGATHNNYIEFED 434

Query: 430 MDGLFLFIQSSLVDGDVVVVKSSNS 454
                         GD VV+ +S  
Sbjct: 435 RAEGIKHAIEVANPGDTVVL-ASKG 458


>gi|325519756|gb|EGC99063.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia sp. TJI49]
          Length = 161

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 13/132 (9%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++D++YNANP SM+AAI VL+         R+ V+GDM E+G+   +FH ++       
Sbjct: 29  TVVDDTYNANPDSMRAAIDVLAGQPA----PRVLVIGDMGEVGDEGPAFHREIGAYARER 84

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG----DVVVVKSSNSC 455
            +  ++  G        A   +    +   +  L   +   L  G      V+VK S   
Sbjct: 85  GVDALFALGDASRDACTAYGDTAR--HFGDVGALVEAL---LASGYDAAATVLVKGSRYM 139

Query: 456 GFYRLINLLLEE 467
              R+++ L  +
Sbjct: 140 KMERVVDALTNQ 151


>gi|332200971|gb|EGJ15042.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47901]
          Length = 481

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    +   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|297521714|ref|ZP_06940100.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Escherichia coli OP50]
          Length = 76

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
          M  + T   L   + G   G      ++ ++ D+R + P   F A+KG  +D HDF   A
Sbjct: 1  MISV-TLSQLTDILNGELQG--ADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQA 57

Query: 61 VQKGAGLVVVNTDMVASIG 79
             GAG ++V+  +   + 
Sbjct: 58 KAGGAGALLVSRPLDIDLP 76


>gi|254515246|ref|ZP_05127307.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
 gi|219677489|gb|EED33854.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [gamma proteobacterium NOR5-3]
          Length = 491

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 143/459 (31%), Gaps = 40/459 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
               VP   +  + +DSR +   + F A++G   DG +F+  A   GA   +V  ++   
Sbjct: 19  LAAEVPALDIAALRLDSRQVEKGDLFIALRGHAQDGREFLAQAAASGAAAALVEDELPLR 78

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK 135
           +    +P+  + ++   L ++A            I A+TG+ GKTT  ++    + S+  
Sbjct: 79  LSP--LPMVVIPNLRHRLCEIAGRFFREPSREMHIAAVTGTNGKTTVSQLFARLVRSVGY 136

Query: 136 TYACIGS--YNNHIGVPLTLAR----------MPVDVDFGIFELGM--SHLGEIRFLTHL 181
               IG+   +   GV  ++            +       +  + M  S     +   + 
Sbjct: 137 DCGVIGTLGASLDGGVHSSVHTTPDSIALQEILAGWAGQAVPFVSMEVSSHALHQGRVNT 196

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    A+ T +   HL     ++    AKA +F        I     D  F    A+   
Sbjct: 197 LDIDTAIFTNLTRDHLDYHGDMQSYGEAKARLFAFESLRTAILN--ADDPFSRHLAQRVP 254

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  +    +   A+ +L   K          +       +    +G   A N+L  L 
Sbjct: 255 TGVSVLRYGIEDSTAEVRLSHLKLSRAGLRFRFESPWGEATLTCPLLGKFNAVNLLAALT 314

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                       ++A+       GR +  R A           + +A          VL 
Sbjct: 315 AALQAGLPFKAVMEAVESLASVPGRMEPLRVAGGPLVVIDYAHTPDA-------LRQVLL 367

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKD 416
            +    +G  IAV G     G         L             ++  +       A+  
Sbjct: 368 TLREQCQGSLIAVFG----CGGDRDRGKRPLMAEAVSATADRAVITSDNPRSEEPLAIIA 423

Query: 417 ALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
            +  S+   Y               S    D V++  K 
Sbjct: 424 DIQASMKGDYLVCADRAEAIRLAIESAGAKDCVLIAGKG 462


>gi|291521934|emb|CBK80227.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus catus GD/7]
          Length = 514

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 69/485 (14%), Positives = 137/485 (28%), Gaps = 56/485 (11%)

Query: 5   WTFHDLLQAIQ-------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +T  +    +           +G   +  +  ++ DSR++ P   F   KG  +    ++
Sbjct: 4   YTLKEYADLLSSVDMLAEAEMMGRD-ETVITYLTYDSRAVTPGTLFIC-KGAAFK-EQYL 60

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITG 115
            +A++ GA   V     V       +P   V D+  A+  LA     +   + T+I   G
Sbjct: 61  ENAIRAGAVAYVSE---VQYETETKVPCLIVKDIRKAMPPLAEMYFNKAWQELTVIGFGG 117

Query: 116 SVGKTTTKEMLTIALSSIK--------------KTYACIGSYNNHIGVP-----LTLARM 156
           + GK+T+   +   +                    Y  +    +HI  P         R 
Sbjct: 118 TKGKSTSAYYMKAIVDDYMAATGGKESAVLSSIDIYDGVIRQESHITTPESVELHEHMRH 177

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            VD      E+ +S         + ++  +AV   I+  H+S     +      +++   
Sbjct: 178 AVDSGITYLEMEVSSQALKYDRVNNMQFDVAVYLNISEDHISPIEHKDFEDYISSKMKMF 237

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +     D     LKA   A   KT     K  +ADF      +   +    V+ 
Sbjct: 238 ALAKQAVVNLDADFVERALKAAEDAGSFKT--FSLKDPSADFYGYNIHKEDGEIIFSVKC 295

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G    +N +  +   ++L   ++     L           R     + 
Sbjct: 296 DKFDETFSLTMPGLFNVENAVAVVAAATLLNIPLEYIKSGLHRAR----SSGRMELYTSA 351

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                    Y  N  S +       +  P        ++      G  +     DL  + 
Sbjct: 352 DKRVTAVVDYAHNKLSFEKLFGSTREEYP-----DHDIVAIFGCPGYKAYIRRKDLGLIA 406

Query: 397 SLYNISHVWLSGFH---------VLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             Y+   V+L                +      ++      E                 V
Sbjct: 407 GEYS-KKVYLVAEDPGKEPVQQISEDIAQYVAQKNCPYEIIEDRGVAIHKAIMECKRPTV 465

Query: 447 VVVKS 451
           +++  
Sbjct: 466 LLITG 470


>gi|221065133|ref|ZP_03541238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
 gi|220710156|gb|EED65524.1| UDP-N-acetylmuramyl-tripeptide synthetase [Comamonas testosteroni
           KF-1]
          Length = 501

 Score = 96.5 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 78/464 (16%), Positives = 150/464 (32%), Gaps = 52/464 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L    + +  ++    G         +  DSR +   +AF A  G   DG  ++  A+ +
Sbjct: 8   LNNAAEAVAWLRSRVQGE--------LQTDSRKVKAGDAFVAWPGAATDGRAYVGQALAQ 59

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA  V+V  D + +       +  +  +  A   +A            ++A+TG+ GKTT
Sbjct: 60  GAAAVLVEADGLQAFDLSGDRIASLKGLKAATGLIADQWFAHPSGELDVLAVTGTNGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVP------------------LTLARMPVDVDFG 163
           T   L  ALS +        +    +GV                       R   D    
Sbjct: 120 TAWWLAHALSKVTLNTRTGCALVGTLGVGVPPALESTGMTTPDPVLLQRAFRSYADQGLA 179

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              +  S +G +       +  +A+ T     HL     ++    AKA++F+       +
Sbjct: 180 ACAIEASSIGIVEHRLDGSKIRVALFTNFTQDHLDYHGSMDAYWQAKAQLFDWPGLPTAV 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D     L            ++S      A  Q +      E     V   G S+ +
Sbjct: 240 VNIDDAHGARLWAR--LQGRAMDVWSVSIQGPARLQAKDIGLGDEGLSFTVLEAGHSLRM 297

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +   N+L  L  +  L   ++ A+ A +   P  GR ++              
Sbjct: 298 NTRLVGQYNVSNLLGVLAALRCLGLTLEEAVAACAHLEPVPGRMQQIVKPGQPLVAVD-- 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y   P +++ A+  L   +   +G+   V G     G    +    L    +  N   
Sbjct: 356 --YAHTPDALEKALRALQPAARQRQGKLWCVFG----CGGDRDNSKRPLMGQAAQANADG 409

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           V+++  +  +              E  + +   I + +  G+ +
Sbjct: 410 VFVTSDNPRS--------------EVPESIIDQILAGMQAGETL 439


>gi|239978976|ref|ZP_04701500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291450855|ref|ZP_06590245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
 gi|291353804|gb|EFE80706.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces albus J1074]
          Length = 552

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 84/493 (17%), Positives = 146/493 (29%), Gaps = 56/493 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFV--NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           P  T  +L   +   + G      V  +GI+ DSR++ P + + A+ G    G DF   A
Sbjct: 13  PATTLEELADQLGVDARGAETPAAVVLSGITHDSRAVRPGDVYAALPGARVHGADFSAQA 72

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
              GA  ++ +        +  +PV  V D  G + ++A             I ITG+ G
Sbjct: 73  ASLGAAAILTDPAGAGPALATGLPVLVVGDPRGRMGEVAATLYGHPGRDLLQIGITGTSG 132

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE------------ 166
           KTTT  ++   L + ++  A            +    M +  +    E            
Sbjct: 133 KTTTAYLIEGGLRAAQEARAKETGEEIPPTGLIGTVEMRIGDERIKSERTTPEATDLQAL 192

Query: 167 -------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                        + +S    +          +AV   ++P H+   S +E+   AKA++
Sbjct: 193 FAVMRERGVRALAMEVSSHALVLGRVDACVFDVAVFNNLSPEHMEFHSDMEDYFRAKAQL 252

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F        +  + D+    LL           + SF    + D   R            
Sbjct: 253 FTKARSKLGVVNHDDEYGRRLLTE-----SEVPVISFSAEGHPDADWRAEDVIVGSLDST 307

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
               G   + +          N+  TL  V  L A       A        G   R    
Sbjct: 308 FTAVGPEGQRISARSPLAGPFNVANTLAAVVALAAAGVDPQTAADGIAAVPGVPGRLERV 367

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                +  + +  +       A  SVL  +    EGR   VLG     G+   +    + 
Sbjct: 368 DAGQPYLAVVDYAH----KTDAVESVLRALRKVTEGRLYIVLG---CGGDRDTTKRGPMG 420

Query: 394 EVL------------SLYNISHVWLSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSS 440
                          +  +   + +    +    +  +     V       G        
Sbjct: 421 AAAARLADLAVLTSDNPRSEDPLAILSTMLAGAAEVPIHERGDVIIDADRAGAIAEAVVR 480

Query: 441 LVDGDVVVV--KS 451
              GD V+V  K 
Sbjct: 481 AEAGDTVLVAGKG 493


>gi|225859285|ref|YP_002740795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae 70585]
 gi|225721175|gb|ACO17029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae 70585]
          Length = 481

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 147/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISQDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQNHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N   ++           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENSVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|116072268|ref|ZP_01469535.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
 gi|116064790|gb|EAU70549.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. BL107]
          Length = 502

 Score = 96.5 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/477 (15%), Positives = 135/477 (28%), Gaps = 41/477 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ +            +  ++ DSR   P   F  + G   DG  F   A+  GA 
Sbjct: 5   LDELLRDVGLTPTVGGSNPQIESVTSDSRLAGPGSLFVGLPGDRVDGGLFWRQALNAGAA 64

Query: 67  LVVVNTDMVASIGSLS-IPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKT---- 120
             V+     A         V  V D L   L +LA +   R    +  +  +        
Sbjct: 65  AAVIGPAAAAVDPPGDSDQVVVVADPLASTLGELAASFWSRPSERMALLGVTGTNGKTTT 124

Query: 121 --TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------LG 168
               + +      S       +  ++ H             +   + E          + 
Sbjct: 125 TYLIEHLALACGRSTALFGTLVNRWSGHSITATHTTAFADRLQAQLAEAASAGSLLAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFL 225
           +S     +      R   AV T +   HL     +E+   AKA +F             +
Sbjct: 185 ISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMEDYFEAKALLFSEALLQAGPARAVV 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L  +   LG +   S      A+ ++      S      +           
Sbjct: 245 NGDDPWGAKLAER---LGAQCWRSSLTDPTAELRMEDLCMTSHGVSGRLISPLGEGAFQS 301

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  +G++      +   ++A+S F    GR    R  L     T +   
Sbjct: 302 PLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGR--MERVLLEDAITTTLPTV 359

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 +     + L+   P  EG+ I V G     G             ++      V 
Sbjct: 360 LVDYAHTPDGLENALAAARPFAEGKLICVFG----CGGDRDRGKRPQMAAIAARLADRVV 415

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   +P  +                +     D+V+V  K 
Sbjct: 416 VTSDNPRTEDPLRILEDVVKGIPDGVDRVVDPDRGAAIAQTIAEADAADLVLVAGKG 472


>gi|307127738|ref|YP_003879769.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
 gi|306484800|gb|ADM91669.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pneumoniae 670-6B]
          Length = 481

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/493 (16%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS    T           G     +      +  +F++   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQRYPTALLSTMNTTLDGTTFFKSSFSTPENIDLFDMMAQ 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +   R    +     A +          +    ++        + +             
Sbjct: 174 AVKNGRSHLVMEVSSQAYLV------HRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|260220010|emb|CBA27120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 499

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/469 (15%), Positives = 148/469 (31%), Gaps = 41/469 (8%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
               ++  +    V G++ DSR     +AF A  G   D   F+  A+ KGA   +    
Sbjct: 6   TPAQAVEWLRSRGVQGLTTDSREATSVDAFIAWPGAATDPRRFVAPALAKGALACLAEQS 65

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALS 131
              +             +      +A A          ++++TG+ GKT+T   L  AL 
Sbjct: 66  GAEAFELDPDRTGFYSGLKAGSGPIAAAFYGMPSRDLAVMSVTGTNGKTSTAWWLAQALG 125

Query: 132 SIKKTYACIGSYNNHIGV--PLTLARMPVDVDFGI----------------FELGMSHLG 173
            +    A        +GV  P  L          +                  +  S +G
Sbjct: 126 QVGGKEAMPCGVIGTLGVGRPPALKATGFTTPDPVLLQKTLRSFTEQGLKACAMEASSIG 185

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                      H A+ T     HL     +    ++K  +F        +    DD   E
Sbjct: 186 IEELRMAGTVIHTAIFTNFTQDHLDYHGSMAAYWASKRALFSWDGLKAAVVNVDDDKGAE 245

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              A   A     +++ G  ++A    R     ++    +V    +S+ +  H IG +  
Sbjct: 246 --LAAELASTSLDVWTVGVQRDARLVARGVTHSAQGLAFDVVEGRESVRLQSHVIGSYNV 303

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L  +  +  +   + +A+++ +   P  GR     C        +  + Y   P ++
Sbjct: 304 SNLLGVIAAMRTVGIPLQSAVQSCATLLPVPGR---MECVGGDSAPLVAVD-YAHTPDAL 359

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  L  ++    G+   V G     G    +    L   ++     H  ++  +  +
Sbjct: 360 AQALRALQPVAQARGGKLWCVFG----CGGDRDASKRPLMGAVAAAQSEHAVVTSDNPRS 415

Query: 414 ------LKDALPRSIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
                 +   L   +   + +              S    DV+++  K 
Sbjct: 416 EKPEAIVAQILLGMVECPHVDVQVDRAVAIADAIRSADARDVILLAGKG 464


>gi|168493432|ref|ZP_02717575.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576477|gb|EDT97005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 481

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    +   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQAGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|22298782|ref|NP_682029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
 gi|30316018|sp|Q8DJI4|MURE_THEEB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22294963|dbj|BAC08791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Thermosynechococcus elongatus BP-1]
          Length = 497

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/485 (16%), Positives = 147/485 (30%), Gaps = 61/485 (12%)

Query: 5   WTFHDL---LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +L        G          V  + ++S    P   F  + G   +G +F   A+
Sbjct: 1   MNLRELLTAAAITPG-FEHPALNQEVKSLRMNSWECEPGSLFIGMPGTRVEGGNFWPSAL 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------------- 107
             GA   VV+    A        V  V D+  A  +LA A                    
Sbjct: 60  AAGAIAAVVS--PQAKPREGEACVIVVPDIERACGRLAAAFYNYPSQHLSLLGVTGTNGK 117

Query: 108 ----------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
                        +    ++  T           +   T   +             A + 
Sbjct: 118 TTTTHLVEHLLNRVGYPTALLGTLYSRWPGHCEVASHTTPFAVTLQEQ------LAAAVD 171

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               FG+ E+  SH      +    +  +A  T +   HL     +E+  +AKA++F   
Sbjct: 172 AGCRFGVMEV-SSHALAQDRVWGC-QFEVAAFTNLTQDHLDYHRDLEDYFAAKAKLFTAD 229

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   LN DD F + L  +   L     +++G SK+ADF+       S      V   
Sbjct: 230 YLKGRAILNGDDPFGQRLAQQ---LPRDRYWTYGLSKDADFRAENLNYRSNGVTGAVHTP 286

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S  +    +G     N+L  + + + +   ++  + AL  F    GR ++ R    Q 
Sbjct: 287 LGSGTLDSPLVGQFNVANVLAAIAMGAAVGLPLEAMLNALRDFPGVPGRMEQVRLDPEQD 346

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++  +        ++L    P   G+ I V G     G             ++
Sbjct: 347 ITVVVDYAHTPDSLE-----NLLRAARPFIPGKLICVFG----CGGDRDRSKRPQMGAIA 397

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +            +   +P    +          L    +   GD V+
Sbjct: 398 ARLADQVVVTSDNPRTENPQRILDDILAGIPPETAMIVEGDRRQAILQAILTAAPGDGVI 457

Query: 449 V--KS 451
           +  K 
Sbjct: 458 IAGKG 462


>gi|146281463|ref|YP_001171616.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
 gi|145569668|gb|ABP78774.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Pseudomonas stutzeri A1501]
          Length = 487

 Score = 96.1 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 74/462 (16%), Positives = 162/462 (35%), Gaps = 43/462 (9%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                    +  +++DSR +   + F A+ G  +DG D +  A+ +GA  V   ++ +  
Sbjct: 9   LPHAGSDVLIRELTLDSRKVRGGDLFLAVPGLQHDGRDHVQDAIARGAAAVAYESEGLDQ 68

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKK 135
             + +  +  V  + G L+ +A            ++ +TG+ GKT+  +++  AL  + +
Sbjct: 69  ALTGAAVMVPVHHLAGQLSAIAGRFYGEPSRNLRLVGVTGTNGKTSVSQLIAQALDRLGE 128

Query: 136 TY---------------ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                                +  + IGV  TLA++  +    +  + +S  G  +    
Sbjct: 129 PCGIIGTLGTGFYGQLEMGRHTTPDAIGVQATLAQLKQEGARAVA-MEVSSHGLDQGRVA 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   +AV T ++  HL     +E   +AKA +  G+       +N DD F   L  +  
Sbjct: 188 ALEFDVAVFTNLSRDHLDYHGTMEAYGAAKARL-FGVPGLSCRVINLDDGFGRALAGEER 246

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + +     +  +A     + +   +     +        +    +G     N+L  +
Sbjct: 247 ESRLISY--SLEDASAYLYCPEAQLDDDGIHARLITPQGERSLRSPLLGRFNVSNVLAAV 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G +  +   +D  +  L       GR    R         ++D ++  +         VL
Sbjct: 305 GALLGMDYPLDEILAVLPELEGPAGR--MQRLGGGDRPLVVVDYAHTPDALE-----KVL 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           + + PH  GR + + G     G    +    L   ++      V ++  +          
Sbjct: 358 TALRPHARGRLLCLFG----CGGDRDTGKRPLMAEVAERLADGVVVTDDNPRNEAPERIL 413

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++        V + +        + ++    DVVV+  K 
Sbjct: 414 EDVRSGFVNPEAVTFVQGRAQAIARLIAAANASDVVVLAGKG 455


>gi|240147081|ref|ZP_04745682.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
 gi|257200751|gb|EEU99035.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (Meso-diaminopimelate-adding enzyme) [Roseburia
           intestinalis L1-82]
          Length = 401

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+     S+       +  I   S  +     F  IKG + DGHD+I+ AV+ G
Sbjct: 1   MRLDQLLKHFSYESVQGSHDLIITDICYHSGKVKRGSLFVCIKGQYTDGHDYIMDAVKAG 60

Query: 65  AGLVVVNT-------------------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           A  VVV+                     +   + +  + V GV D   AL +++ A    
Sbjct: 61  AFAVVVDESCMVNVRWECFIYTEHGKVRVHELVRNYGMAVIGVKDTRQALAQISAAFYDY 120

Query: 106 SKATI 110
               +
Sbjct: 121 PAKKL 125


>gi|222474927|ref|YP_002563342.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
 gi|255002901|ref|ZP_05277865.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Puerto Rico]
 gi|222419063|gb|ACM49086.1| UDP-N-acetylmuramoylalanyl-D-glutamate-- 2,6-diaminopimelate ligase
           (murE) [Anaplasma marginale str. Florida]
          Length = 472

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/455 (14%), Positives = 133/455 (29%), Gaps = 58/455 (12%)

Query: 28  NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +GI+ DSRS+ P   F  +    KG       F+  AV+ GA  +V            S 
Sbjct: 15  SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +           KLA      S+   +A +TG+ GKT+  +           T A +G+
Sbjct: 68  -IIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186
               +G     +         +                  +  S  G  +   + V+   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDDSFFELLKAKSHALGIK 245
           A  T ++  HL     +E+  + K ++F  +  + G   LN D   +E L+  +    I 
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSREGCAVLNADSEQYEELRELAAGRNI- 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G         R  +     +           +     +G     N+L  L IV+ 
Sbjct: 246 --ITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAIVAA 303

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             +                      R  ++        ++      S+K           
Sbjct: 304 SGSGHRDVPIDRLASPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------H 351

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALP 419
               + + V G     G            +++      V ++  +  +       K+ + 
Sbjct: 352 GFPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIML 407

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
              +            +  +  +  + V++   K 
Sbjct: 408 HCENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|148988576|ref|ZP_01820009.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925777|gb|EDK76852.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 481

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    +   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYIAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISLDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFRFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|254994779|ref|ZP_05276969.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. Mississippi]
          Length = 472

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/454 (13%), Positives = 128/454 (28%), Gaps = 56/454 (12%)

Query: 28  NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +GI+ DSRS+ P   F  +    KG       F+  AV+ GA  +V            S 
Sbjct: 15  SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +           KLA      S+   +A +TG+ GKT+  +           T A +G+
Sbjct: 68  -IIICPMQHDLYYKLASEFYHGSQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186
               +G     +         +                  +  S  G  +   + V+   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKAST 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T ++  HL     +E+  + K ++F  +       +   ++  E           + 
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAV--LNADSEQYGELRELAAGRN 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I ++G         R  +     +           +     +G     N+L  L +V+  
Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKMCGEVIYDGAFPVLGKFQISNLLCALAVVAAS 304

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +                      R  ++        ++      S+K            
Sbjct: 305 GSGHRDVPIDRLAPPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------HG 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420
              + + V G     G            +++      V ++  +  +       K+ +  
Sbjct: 353 FPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLH 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
             +            +  +  +  + V++   K 
Sbjct: 409 CENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|302344207|ref|YP_003808736.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
 gi|301640820|gb|ADK86142.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfarculus baarsii
           DSM 2075]
          Length = 511

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 78/490 (15%), Positives = 139/490 (28%), Gaps = 62/490 (12%)

Query: 8   HDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             L + I     +G  P   + G+  DSR   P   F A+ G   DGH          A 
Sbjct: 4   DQLTRLIGPESLLGHAPTAELTGVCCDSRQAGPGMVFVAVVGHSADGHA-----YVAAAA 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKE 124
                  +V       I    V D   AL+ LA     R   +  ++ +TG+ GKTT   
Sbjct: 59  AAGATAAVVQRPVEADIAQIVVPDSRLALSALADEFAGRPSQRLKLVGVTGTNGKTTICH 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF-------------ELGMSH 171
           +    ++    T            V    A    D                    + +S 
Sbjct: 119 LARAIMAQRWPTGMIGTVETCFAQVRRPAAMTTPDAVTLQKTLAEMLANGVEAAAMEVSS 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE-------IFEGLEKTGTIF 224
               +      R  + + T ++  HL     + +   AK               K     
Sbjct: 179 HALDQHRADHCRFDVGLFTNLSRDHLDYHPDMADYFRAKRLLFTELLPWSARQGKRPVSV 238

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD    +L  ++   G+    ++G +  AD   R      +   + +   G S+E  
Sbjct: 239 ICLDDDHGRVLADQARGTGLAL-LTYGLAPGADVGGRVLAGGVDGMTVRIDHPGGSLEFH 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G +  QN++    +   L    +     L       GR +R     ++     +D 
Sbjct: 298 SRLVGRYNLQNIVGAAAVGLALGLSPEEIKAGLEGVAGVPGRLQRV-PGPDRSPAVFVDY 356

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +++    +       L+ + P   GR I V G     G         L    +       
Sbjct: 357 AHSPEAIAA-----ALAVLRPLCAGRLICVFGA----GGDRDKGKRPLMGRAAGQAADFC 407

Query: 405 WLSGFHVL--------ALKDALPRSIHVHYSETMDG-----LFL--------FIQSSLVD 443
            L+  +           + +A          +                        +   
Sbjct: 408 VLTSDNPRTEDPMAIIDMVEAGLVESEARRCDNPAAGQRAYAVEADRAAAIAMAIQAAGP 467

Query: 444 GDVVVV--KS 451
            DVV++  K 
Sbjct: 468 ADVVLIAGKG 477


>gi|282882294|ref|ZP_06290925.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
 gi|281297844|gb|EFA90309.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus lacrimalis
           315-B]
          Length = 510

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 144/352 (40%), Gaps = 14/352 (3%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
             S   ++ ITGS GKT+ K +    L    +T     S+N  +G+   +   +  + + 
Sbjct: 156 KESGLKVLGITGSFGKTSVKFISDTILKEKYRTKNTPSSFNTPMGLSKVINNELDKNHEV 215

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I ELG    GEI  +  LV P I +IT + P H+  F  IE I + K E+ E L + G 
Sbjct: 216 FIAELGAKQKGEIDEVAKLVSPDIGIITAVGPTHMHLFKTIENIQNTKYELIEDLPEDGI 275

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              NYD+ + + L  K+        Y     +  D   +  +   + S   + ++G    
Sbjct: 276 AIFNYDNDYVKPLADKT--KKKTYRYGIKDIEKLDVYAKDIRVNEKGSTFTLGIKGLG-- 331

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +          N+   L   S          +  +     +    R     +   + +I
Sbjct: 332 EISCSSVLLGIHNISNLLAGASAAYVLGFNLEQIKNGIEKVKAVEHRLNIVPSPAGYVVI 391

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+++N+NP   +AA+SV+ +     EG++I +   M E+G + +  +  +   ++     
Sbjct: 392 DDAFNSNPVGFRAALSVIDEFK---EGKKIIITPGMVELGAIEEEENYKIGIEIAKV-CD 447

Query: 403 HVWLSGFHVLA-LKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +V L G  + A +K AL  +      +   ++++     +      GDVV+ 
Sbjct: 448 YVILVGQKISAPIKRALIDNNFNEDRIFTVKSLNDGTSKLVEIAKAGDVVLF 499


>gi|269127141|ref|YP_003300511.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
 gi|268312099|gb|ACY98473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermomonospora curvata
           DSM 43183]
          Length = 515

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 94/482 (19%), Positives = 156/482 (32%), Gaps = 49/482 (10%)

Query: 3   PLWTFHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           PL    +LL A   G     + +  V GI+ DSR + P + + A+ G    G +F   A 
Sbjct: 11  PLLGLVELLSAQADGP---GLAKVAVTGITHDSRQVLPGDLYVALPGTRAHGAEFAAQAA 67

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             GA  +  +        +  +PV   DDV   L + A           ++I +TG+ GK
Sbjct: 68  AAGAVAIWTDPAGRHRAAATGLPVLVTDDVRARLGEAASWVYGDPARDLSLIGVTGTSGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VPLTLARMPVDVDFGIF----------- 165
           TTT  +L   L +     A IG+    IG   +P +L          IF           
Sbjct: 128 TTTVYLLEAGLRAAGVDTAVIGTVEMRIGDTRLPSSLTTPEATDLHAIFAKMREVGVGAA 187

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +         +AV T ++  HL   + + +  +AKA++F        +  
Sbjct: 188 AMEVSSHALAQGRVGGTCYDVAVFTNLSQDHLDYHATMADYFAAKAKLFTPAYSRVGVVN 247

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D    EL      A    T +S     +AD++    +  ++ S   +   G     V 
Sbjct: 248 VDDGYGREL---TRIAQVPLTTFSAAGDPSADWRAEDVRLGADGSVFRLVGPGGIEADVS 304

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +         +   +  +          A +      G   R         FT + + 
Sbjct: 305 IQLPGPFNVANALAAIVALVEAGLPLQV--AAAGVGTLTGVPGRLEPIDEGQDFTALVDY 362

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                    A  +VL+ +     GR I VLG     G         L    +        
Sbjct: 363 ----SHKPGAVEAVLTSLREVTAGRLIVVLG----CGGDRDRGKRPLMGETAARLADVAV 414

Query: 406 LSGFHVL-----ALKDAL-------PRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV-- 449
           L+  +       A+  A+       P++   H                    GDVVV+  
Sbjct: 415 LTDDNPRSEDPLAILAAMVEGVLKVPQAERAHLVVEPDRAAAIALALGRARRGDVVVIAG 474

Query: 450 KS 451
           K 
Sbjct: 475 KG 476


>gi|262283209|ref|ZP_06060976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
 gi|262261461|gb|EEY80160.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus sp. 2_1_36FAA]
          Length = 481

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 79/489 (16%), Positives = 152/489 (31%), Gaps = 71/489 (14%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH          + IS DSR++     FF +KG ++ 
Sbjct: 1   MIKIETIIDILKKDHNFREIIKDGHYFFHDSGLTFDKISYDSRNVTNTTLFF-VKGENFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+  AV+ G    +  +D       + IPV  V+D+  A++ +A+      + K  I
Sbjct: 60  -KEFLEGAVESGLKFYISESDF-----EVGIPVLVVNDIKQAMSLIAMEFYGNPQDKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP------------- 157
           +A TG+ GKTT+       LS   +            G     + +              
Sbjct: 114 LAFTGTKGKTTSAYFAYQILSQSHRPALLSTMNTTLDGKNFFKSSLTTPESLDLFKMMAQ 173

Query: 158 ---VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
               D    I E+  S    ++   + +    +V   I+P H+        E+    K  
Sbjct: 174 AVANDRTHLIMEV--SSQAYLKKRVYGLTFDASVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N     F+++K +  ++          +   D Q   ++   + +  
Sbjct: 232 LMENSR---AVVVNSGMDHFQIVKEQVSSIEHDFYGENSSNTIIDSQAFNFEVSGKLAGK 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      L           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NALAAGLACLRLGASLTDIQKGITLTRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N +         +L+ +  H +G+ + VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFVDYAHNGDS-----LTKLLNVVQEHQKGQTVLVLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+           +   +    S  V              S    +G
Sbjct: 388 GILLNKHPEIQVILTADDPNREDPVTIAKEIASYISHDVTIIADRAEAIKVAMSLTGQEG 447

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 448 DAVILAGKG 456


>gi|319939603|ref|ZP_08013962.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
 gi|319811192|gb|EFW07498.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Streptococcus anginosus 1_2_62CV]
          Length = 481

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 81/493 (16%), Positives = 149/493 (30%), Gaps = 64/493 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           + F +++   +G             IS DSR +     FF +KG ++   +F+  AV+ G
Sbjct: 15  YNFREIID--KGQYFYHYRNLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEKAVESG 70

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
               V  TD       ++IPV  V+DV  A++ LA+      + K  ++A TG+ GKTT+
Sbjct: 71  LQFYVSETDF-----EVTIPVILVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTS 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFE 166
                  L    K            G     + +                       I E
Sbjct: 126 AYFAYHILQQSHKPALLSTMNTTLDGEHFFKSTLTTPESLDLFKMMATAVENGRTHLIME 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           +  S    ++   + +   + V   I+P H+        E+    K  + E         
Sbjct: 186 V--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVVNS 243

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                       A                 +   Q    +    Q++        + +  
Sbjct: 244 EMDHFEVLAEQVA-------------SMEHDFYGQHSDNQIHHSQAFSFETSGILTEKFD 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG    +N L        L A +    K ++            +    + F      
Sbjct: 291 IQLIGRFNQENALAASLACLRLGATISDIKKGIAATRVPGRMEVLTQQNGAKVFVDYAHN 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +          ++LS +  H +GR + VLG     GE  +    D   +++ +    V
Sbjct: 351 GVSLA--------NLLSVVQEHQKGRIVLVLGATGNKGESRRK---DFGLLINQHPELMV 399

Query: 405 WLSG-----FHVLALKDALPRSIHVHY--SETMDGLFLFIQSS-LVDGDVVVVKSSNSCG 456
            L+         +A+   +   I          +             GD V++       
Sbjct: 400 ILTADDPNYEDPIAIAKEIASYISFDVDMIADREEAIKKALGLTSKKGDAVILAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++IN     +P
Sbjct: 459 CYQIINGKKANYP 471


>gi|257453538|ref|ZP_05618828.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
 gi|257448996|gb|EEV23949.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enhydrobacter aerosaccus
           SK60]
          Length = 520

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/501 (15%), Positives = 151/501 (30%), Gaps = 60/501 (11%)

Query: 1   MN---PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGHD- 55
           M    P+ +   L ++++   +  V         +DSR +   + F  +K  +  D  D 
Sbjct: 1   MITLQPMMSALSLPESVR-QLLNPVMNQPFGQFVVDSRQVGQGDVFVLLKSQNATDSLDL 59

Query: 56  -----FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT- 109
                ++     K A  V+   D+ A      +P+  +  +   L  L   +  +   T 
Sbjct: 60  EKVAGYLAQVSDK-AAFVLSEIDVSAIQSQFMLPIIYLPTIRDFLGSLIQTSLQQQHPTQ 118

Query: 110 ---IIAITGSVGKTTTKEMLTIALSSIKKTYACI------------GSYNNHIGVPLTLA 154
              +IA+TG+ GKTT  +++   +S      A +             S +  + V     
Sbjct: 119 LPAVIAVTGTNGKTTVSQLVAQLISQSGIKTAVMGTAGNGVLPNLTPSTHTTLEVFNLQH 178

Query: 155 RMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAK 210
            +      G+  L    S  G  +     V  ++A+ T ++  HL   + +++   A A+
Sbjct: 179 AIDDFAKQGVQALAIEASSHGLHQQRLQGVPINVAMFTNLSRDHLDYHTDMDDYAQAKAR 238

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ- 269
                         +N DD F EL+   ++A  +        +  ADF  +      +  
Sbjct: 239 LFDKAHFPTLTHAIINLDDEFSELMIEAANASHLTVWTYSLTNDQADFFAKTILPSLQGG 298

Query: 270 ------SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S         ++     G          +        +A +  ++  +    P 
Sbjct: 299 DLTIALSKAVTPQGELTVNSPLLGRFNVANLLASIAGAFALSQSAAMGLSVAQIQAAVPT 358

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +       I +  +   A       VL+ +  H  G   AV G     G 
Sbjct: 359 LRGATGRMDRVPSTSSCFIVDYAHTPDA----LEQVLTSLKSHCTGELWAVFG----CGG 410

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI------HVHYSETMDG 432
                   L     L     V L+  +       A+ + +   +                
Sbjct: 411 DRDKGKRPLMAQAGLRLADKVILTADNPRSEDPNAILNDMQAGMTCQQHYQAIIEPDRQK 470

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
              +        D+VV+  K 
Sbjct: 471 AIEYAVQHAKPSDIVVIAGKG 491


>gi|320011282|gb|ADW06132.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 575

 Score = 95.7 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 92/478 (19%), Positives = 148/478 (30%), Gaps = 48/478 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   +     G    G V GI+ DSR++ P + + A+ G  + G DF   A   GA
Sbjct: 65  SLGELAARLGA---GPQDAGEVTGITHDSRAVRPGDVYAALPGARFHGADFSAQAAGLGA 121

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTK 123
             ++ +        +  +PV   DD  G +  LA     R    +  I ITG+ GKTTT 
Sbjct: 122 AAILTDPAGAERAAATGLPVLVTDDPRGRMGDLAAEIYGRPGVGLLQIGITGTSGKTTTA 181

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHL 181
            ++   L    ++   IG+    IG     +    P   D       M   G       +
Sbjct: 182 YLVEGGLRGAGRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 241

Query: 182 VR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                           +AV   ++P H+   SG+E+   AKA++      T         
Sbjct: 242 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQAKAQL-----FTPERSKLGVV 296

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +F +    +        + +F    + D + R              + G   E V     
Sbjct: 297 NFDDEYGRRLVDEASVPVVTFSAEGHPDAEWRAEDVEVGPRDSTFTVIGPKGERVTAKAP 356

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+  TL  +  L         A        G   R         +  + +  +  
Sbjct: 357 LPGPFNVANTLAAIVTLAVAGIDPQIAADGVAGVPGVPGRLERIDAGQPYLAVVDYAH-- 414

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                A  SVL  +    EGR   VLG     G    +         +        L+  
Sbjct: 415 --KTDAVESVLRSLRKVTEGRVHIVLG----CGGDRDTTKRGPMGAAAARLADTAVLTSD 468

Query: 410 HVLA------LKDALPRSIHVHYSETMDGL--------FLFIQSSLVDGDVVVV--KS 451
           +  +      L   L  +  V   E  D L             +    GD V+V  K 
Sbjct: 469 NPRSEDPLGILAAMLSGAAEVPVHERGDVLVDADRAAAIAAAVARAEPGDTVLVAGKG 526


>gi|313634141|gb|EFS00802.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL N1-067]
          Length = 147

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E    R      +    +++++YN++P +++  +     +   G+  +  VL DM E+G
Sbjct: 1   VERSKSRLEWLTAKNGARILNDAYNSSPTALQTVLKTFMHMDSKGK-PKYLVLADMLELG 59

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQS 439
           ELS   H + AEVL    I  ++L G  + A        I    V + +T + L   +  
Sbjct: 60  ELSVPLHQESAEVLEEGTIEKIFLYGDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLK 119

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLL 465
            +   + ++VK S   G   ++  L+
Sbjct: 120 EITGNEWILVKGSYGMGLKDVVENLI 145


>gi|103487370|ref|YP_616931.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
 gi|98977447|gb|ABF53598.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingopyxis alaskensis RB2256]
          Length = 479

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 135/413 (32%), Gaps = 34/413 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P   V G++ID R +AP   F A  G  ++G DFI  AV        V            
Sbjct: 15  PNPVVTGLAIDHRKVAPGTLFGAFVGERFNGEDFIPDAV----AAGAVAVVARPDAKVDG 70

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT------ 136
                  +   A   +A     R  AT +A+TG+ GKT+T EM                 
Sbjct: 71  AVHVADANPRRAFAHIAARFFHRFPATCVAVTGTNGKTSTVEMTRQLWRMAGFNAASIGT 130

Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFEL-----GMSHLGEIRFLTHLVRPHIAV 188
                 + S +  +  P  +  +       +  +       S  G  ++ T  +    A 
Sbjct: 131 LGITTSVDSASTGLTTPDIVTFLSNMSGLAVEGVTHAAFEASSHGLDQYRTEGLPVKAAA 190

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   +AK  +F  + + G   + + D        ++       + 
Sbjct: 191 FTNLSHDHLDYHGTMEAYLAAKMRLFREVVQPGGAAIVWADDAHSAAVIEAARARDVRVL 250

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G++  A  +L           + +     + +V    IG + A N L+  G+V     
Sbjct: 251 TVGQAGEA-LRLVSRTPTQLGQLLVIAAGDVTHKVTLPLIGAYQAANALVAAGLVIATGG 309

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           DV   +  L+   P  GR          G    +D ++  +          L  + PH  
Sbjct: 310 DVALTLANLARLQPVRGR-LERAAIARSGAPIYVDYAHTPDAIEA-----ALDALRPHAT 363

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKD 416
           GR I V G     G             ++      + ++     G     ++D
Sbjct: 364 GRLILVFGA----GGDRDQAKRPEMGRVAAAKADLLIITDDNPRGEDPAVIRD 412


>gi|167586016|ref|ZP_02378404.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase [Burkholderia
           ubonensis Bu]
          Length = 175

 Score = 95.7 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T++D++YNANP SM+AAI VL+         R+ V+GDM E+G+   +FH ++       
Sbjct: 43  TVVDDTYNANPDSMRAAIDVLAAQPA----PRVLVIGDMGEVGDEGPAFHREVGAYARER 98

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS---LVDGDVVVVKSSNSCG 456
            I  ++  G        +   +    +   +  L   + ++         V+VK S    
Sbjct: 99  GIDALFALGDASRDACASYGDTAR--HFGDVGALVDALLAAGYGARA--TVLVKGSRYMK 154

Query: 457 FYRLINLLLEE 467
             R+++ L  +
Sbjct: 155 MERVVDALTNQ 165


>gi|27381718|ref|NP_773247.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
 gi|46577023|sp|Q89FU2|MURE_BRAJA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27354887|dbj|BAC51872.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Bradyrhizobium japonicum USDA 110]
          Length = 485

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/453 (16%), Positives = 142/453 (31%), Gaps = 42/453 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G+++DSR + P + FFA+ G   DG  FI  AV        V      +     +P
Sbjct: 20  LEVTGVALDSRVVRPGDLFFALAGSKTDGARFIDAAV----AAGAVAIVGDHAPDGCKVP 75

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-------- 136
              V +   AL   A        ATI A+TG+ GKT+           +           
Sbjct: 76  FIAVANPRRALALAAARFFPAQPATIAAVTGTSGKTSVAAFTRQIWERLGHASASIGTIG 135

Query: 137 -YACIGSYNNHIGVPLT---LARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVIT 190
             +   +    +  P       +M      G+  L    S  G  ++    VR      T
Sbjct: 136 LVSPKRTVYGSLTTPDPIALHRQMDEIAREGVTHLAFEASSHGLDQYRLDGVRVSAGGFT 195

Query: 191 TIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++  H+     +    A+      E +   G   ++ D          + A G++ +  
Sbjct: 196 NLSRDHMDYHPTVAHYLAAKLRLFRELVPPGGAAVISADHDCSAEAIDAAKARGLRVMAV 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                 A   +R  +   +    ++ ++ +    V         Q     +     +   
Sbjct: 256 GRNGDGAGEGIRLTEVGVDGFSQKLTVEHRGKRYVVLLPLAGEFQVENALVSAGLAIGTG 315

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D A    S+ H +  +G+  R     G    +D ++  +  +       L  + P+ + 
Sbjct: 316 SDAANVFASLEHLEGAKGRLERVGERNGAPIFVDYAHKPDALA-----KALQALRPYAKR 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R + V G     G    +    +   ++  N   V ++  +  +     P +I      T
Sbjct: 371 RLVVVFGA----GGDRDAGKRPIMGEIAAENADGVIITDDNPRS---EQPEAIRAAILAT 423

Query: 430 MDGLFLF---------IQSSLVDGDVVVV--KS 451
             G                 L  GD +++  K 
Sbjct: 424 AKGAREIGDRAAAIRAAIEELEQGDALLIAGKG 456


>gi|262373645|ref|ZP_06066923.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
 gi|262311398|gb|EEY92484.1| UDP-N-acetylmuramyl tripeptide synthase [Acinetobacter junii SH205]
          Length = 499

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/462 (16%), Positives = 147/462 (31%), Gaps = 57/462 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             NG  +DSR +A  + F A+    +       +F   A+  GA  V+  + +       
Sbjct: 21  PFNGFCLDSRKVASGQIFIALNSYSQPEKT--IEFAQKALDSGALAVISESALGLKNE-- 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               +    V   + +        S+       +A+TG+ GKTT   ++   L S +   
Sbjct: 77  ----WVCPQVRYLMGEWQKQYLQASEPVQALRGVAVTGTNGKTTISRLV-AELISSQGLG 131

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG---------------IFELGMSHLGEIRFLTHLV 182
             +     +  +P         +D                    L  S  G  +   +  
Sbjct: 132 CAVMGTTGNGILPNLTPSTHTTLDALQLQTALHDYAQQGAKFVALEASSHGLEQGRLNGC 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV + ++  HL     ++  A AKA +F+       +    D     +LKA  +  
Sbjct: 192 DIEIAVYSNLSRDHLDYHGTLDAYAEAKALLFKFATLKAVVINLDDQYASIMLKAAKNNP 251

Query: 243 GIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               I ++  ++ + D+ +   +     +   +     S  V    +G    +N+L +L 
Sbjct: 252 SQPKILTYSLTQTSADYHIADLQYRLSGASFTLISPVGSYAVNSPLLGQFNVENLLASLI 311

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                  D+   +K +       GR +  +         L    Y   P ++   I VL+
Sbjct: 312 AAEYAGFDLADLVKFVPELKGAPGRMQVIQ-----DHERLFVVDYAHTPDAL---IQVLT 363

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--ALKDALP 419
            +  H  G+  AV G     G         L    +L   + V L+  +      +    
Sbjct: 364 TLKRHVTGQLWAVFG----CGGDRDRGKRPLMTQAALDYANPVVLTSDNPRTENPEQIFA 419

Query: 420 RSIHVHYSE--------TMDGLFLFIQSSLVDGDVVVV--KS 451
              H    +               F+      GD+VV+  K 
Sbjct: 420 DMKHGVDFDGHQIDEIHDRREAIKFVVKQAQAGDIVVIAGKG 461


>gi|71898207|ref|ZP_00680381.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
 gi|71731946|gb|EAO34003.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylella fastidiosa
           Ann-1]
          Length = 496

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 145/459 (31%), Gaps = 46/459 (10%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHY--DGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
              ++G+ +DSR + P +AF A+    +   G  FI  A  +GA  ++        +   
Sbjct: 19  DVVISGLVMDSREVQPGDAFVAL--ARFGAHGLCFIEDACARGAVAILFEPPAPQGVSVP 76

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI------ 133
                 V  +   L  +A           T++ +TG+ GKT+T ++L  A   +      
Sbjct: 77  DGA-IAVHGLRARLGAMADRFHGHPSQAMTMVGVTGTNGKTSTVQLLAQAWHRLGVRSAT 135

Query: 134 ----------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                     ++      +    + +   L ++  D    +  + +S     +     V 
Sbjct: 136 CGTLGVGLYDQQLVPTGFTTPLVLQLHQCLGQLRDDGAQAVA-MEVSSHALDQGRVDGVH 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + V T +   HL     +E   +AKA +F        +    D     LL        
Sbjct: 195 YDVVVFTNLTRDHLDYHGDMEHYGAAKARLFAHQGVQAAVINVDDLFGLRLLHG-LAKGV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   S     +AD   +      +    ++ +      V    +G     N+L   G++
Sbjct: 254 RRVGVSACGHTDADVMAQHLSLNLQGIGFDLVIGADRAPVRSPLMGRFNVDNLLAVAGVL 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +      LS   P  GR  R      Q    ++D ++  +         VLS +
Sbjct: 314 YALDYALSEIAAVLSTLRPIHGRMNRLGGQDGQP-MVVVDYAHTPDALG-----QVLSSL 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           S H  GR I V G     G            V++  N   V ++  +            +
Sbjct: 368 SSHVCGRLICVFG----CGGERDRGKRSQMAVIAESNADVVLVTDDNPRGEDGDGIVADI 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                R   V                   GDVV++  K 
Sbjct: 424 LAGFVRPNLVKVQRDRSAAIAAAIGIASAGDVVLIAGKG 462


>gi|218134982|ref|ZP_03463786.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990367|gb|EEC56378.1| hypothetical protein BACPEC_02887 [Bacteroides pectinophilus ATCC
           43243]
          Length = 526

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 142/389 (36%), Gaps = 28/389 (7%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +V N        +++      +D    L  +           +I +TGS GKT+ K  L 
Sbjct: 151 IVCNIINHPVEAAINRYYI--NDARRKLESV-------EGIKVIGVTGSYGKTSVKFYLQ 201

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L           S+N  +GV  T+   +    +  I E+G  H+G+I+ +  +V P  
Sbjct: 202 TLLQEKYNVLVTPESFNTPMGVVRTIRGSLRSTHEIFICEMGARHVGDIKEICDIVHPDY 261

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT+I P HL  F  +E I + K E+ + L   G +FLN D+ + +             
Sbjct: 262 GIITSIGPQHLETFFNMENIKNTKFELADALPDDGILFLNGDNEYIQDKAKDYKNKVFYF 321

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               G    A              +      G +       IG H   N+   +   + L
Sbjct: 322 AQGSGNGYCA---SDIAVSQLGTEFTMTAPDGTTENFQMRLIGAHNVINVAGAIAAANTL 378

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +      +    P   R +        G  T+ID++YN+NP   KAA+  L+     
Sbjct: 379 GIPLSDLKIPVRRIQPVPHRMQMREH----GQVTIIDDAYNSNPVGSKAAVETLAMF--- 431

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRSI--- 422
            +G RI +   M E+G+  + ++       +     ++ L G  H   +K+ +       
Sbjct: 432 -DGIRILITPGMVELGDKEKEYNYKFGTYAADC-CDYILLVGKKHTEPIKEGVLSKGFTP 489

Query: 423 -HVHYSETMDGLFLFIQSSLVDGD-VVVV 449
                 + ++    +  +    G   +++
Sbjct: 490 QKCQSFDKLEEALSYAYAIKGQGHRYILL 518


>gi|255320231|ref|ZP_05361416.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
 gi|255302670|gb|EET81902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acinetobacter
           radioresistens SK82]
          Length = 499

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 76/482 (15%), Positives = 155/482 (32%), Gaps = 60/482 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAV 61
           TF ++     G++         +G  +DSR +   + F A+    +        F  +A+
Sbjct: 4   TFSEI---YPGNANVEWANQPFSGFCLDSRKVQAGQIFIALDSLSQSDKT--RIFAENAL 58

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA----RLRSKATIIAITGSV 117
            +GA  ++  +D+  +        +    V   +           R  + A I+A+TG+ 
Sbjct: 59  SQGALGIISESDLGVTTA------WVCPQVRQWMGGWQKQYLQATRPVNSARILAVTGTN 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-------------- 163
           GKTT   ++   L S +K    +     +  +P  +A     +D                
Sbjct: 113 GKTTISRLI-AELISFQKQPCAVMGTTGNGILPHLVASTHTTLDALQLQNALHDFSSQGA 171

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S  G  +   +     IA+ + ++  HL     +   A AKA +F+       
Sbjct: 172 NFVALEASSHGLEQGRLNGCEIEIAIYSNLSRDHLDYHGTLTAYADAKALLFKFATLRSA 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    DD    +L+          I ++       D+++       + +  ++       
Sbjct: 232 VINLDDDYAPVMLETAQANPARPKILTYSLQHPEADYRVSDIHYSLKGAKFKLIAPTGEY 291

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +G    +N++ +L  V      +   +  +       GR +  R A        
Sbjct: 292 VVQSPLLGQFNIENLVASLIAVEQAGFKLSDILATVPQLKGAPGRMQVIRDAER----LF 347

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +   A       VL  +  H + +  A+ G     G         L    +L + 
Sbjct: 348 VVDYAHTPDA----LTQVLVTLKRHVQHQLWAIFG----CGGDRDRGKRPLMTQAALNDA 399

Query: 402 SHVWLSGFHVL---------ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             V L+  +            +K  +   + HV           +       GD+VV+  
Sbjct: 400 DPVILTSDNPRTESPEQIFTDMKHEVDFGNHHVQEIRDRREAIKYAVQQAQAGDIVVIAG 459

Query: 450 KS 451
           K 
Sbjct: 460 KG 461


>gi|118618800|ref|YP_907132.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium ulcerans Agy99]
 gi|118570910|gb|ABL05661.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           MurE [Mycobacterium ulcerans Agy99]
          Length = 559

 Score = 95.3 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 78/488 (15%), Positives = 155/488 (31%), Gaps = 58/488 (11%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             +L   +              P   + G+++ ++++ P + F A+ G    G      A
Sbjct: 56  LAELAVQVGAVLADGPHRAAAVPDTLITGMTLRAQAVQPGDLFAALAGSATHGARHTADA 115

Query: 61  VQKGAGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARLRSK--ATIIAI 113
           +++GA  V+ +   V +I +L      +PV       G L + A           T++ I
Sbjct: 116 IERGAVAVLTDPAGVTAISALGCVPGTVPVLVHPAPRGVLGEAAALVYGHPSDRLTVVGI 175

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMP 157
           TG+ GKTTT  ++   L +  +    IG+    I                   +  A + 
Sbjct: 176 TGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRIDGADIPSTLTTPEAPTLQAMLAAMVE 235

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD  + E+  SH   +  +  + R  +   T ++  HL     + +   AKA +F+  
Sbjct: 236 RGVDTVVMEV-SSHALTLGRVDGI-RFAVGGFTNLSRDHLDFHPTMADYFEAKALLFDPA 293

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +               A    T+ + G+  +             Q +  +   
Sbjct: 294 SALRGHSVVVCIDDEAGRAMADRAGVAITVSATGQPAHWRATDVAPVGAGGQEFTALDPA 353

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G    V     G++   N L+ L I+  +    + A   L                    
Sbjct: 354 GVGHRVRIGSPGHYNVSNCLLALAILDAVGVSPEQAAPGLRETRVPGRL----EQVDRGQ 409

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            F  + + Y   P +++  +S L     + + R   V G     G+        +  + +
Sbjct: 410 DFLALVD-YAHKPGALREVLSTL----RNPQRRLAVVFGA---GGDRDPGKRGPMGRIAA 461

Query: 398 LYNISHVWLS-----GFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGD 445
                 V ++     G    A++  +         +  V           +       GD
Sbjct: 462 EL-ADLVVVTDDNPRGEDPGAIRRTIVAGAAESGGAAQVVEIADRGEAIGYAVDWARTGD 520

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 521 VVLIAGKG 528


>gi|2073484|emb|CAA72472.1| UDP-MurNAc-pentapeptide synthetase [Rickettsia prowazekii]
          Length = 96

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   W    L  A+             N +  +S+ +   + F A++G   DGHD+I  A
Sbjct: 1   MI--WNSKTLSIALGIEI---SNSVNCNEVQFNSKDVKKGDLFIALQGNR-DGHDYIQDA 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           + KGA  V+V+  +  +       +  V++   AL K+A+  R  
Sbjct: 55  IDKGATAVIVSKQVEINDKD---KIILVNNSFEALQKMALYKREN 96


>gi|303280806|ref|XP_003059695.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458350|gb|EEH55647.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 614

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 87/463 (18%), Positives = 152/463 (32%), Gaps = 43/463 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +G      V+GI+ DSR + P + F  + G  +DGHDF L AV  GA  VV   ++    
Sbjct: 107 LGEDEDVEVSGIADDSRVVLPGDVFVCVPGATFDGHDFALDAVAAGAVAVVCEGEIEGLT 166

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               IP   V     AL K+A A         T + +TG+ GKTTT  ++   L++   +
Sbjct: 167 DE--IPQVVVSSCAKALGKIAAAFYGSPSQQLTTVGVTGTNGKTTTTHLIQAILAANDVS 224

Query: 137 YACIGSYNNHIG-----VPLTLARM---------PVDVDFGIFELGMSHLGEIRFLTHLV 182
              +G+    IG     VP T              +D   G   + +S            
Sbjct: 225 CGVVGTVGYEIGDGKYEVPNTTPDALQTQQILAGMIDAGAGACAMEVSSHALELGRVDEC 284

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD--DSFFELLKAKSH 240
              +AV T ++  HL     +E+   AKA++F  L                       + 
Sbjct: 285 DFDVAVFTNLSRDHLDFHGSMEKYREAKAKLFHKLTDPARQRAKDRDTFDNAAYFIEAAG 344

Query: 241 ALGIKTIYSF----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                 I ++     K   AD  +   K    ++ + +Q      E V   +G     N+
Sbjct: 345 GGDRVPIITYATQPSKEGQADVFVSDVKLALFETTLTIQTPVGEFEAVCGVVGKINVTNI 404

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + +   L   +D     +    P  GR +                + +A        
Sbjct: 405 AAAVAVGVALEIPLDVIAAGVEEMTPVPGRMELIDEGQPFSVIVDYAHTPDA-------L 457

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---- 412
              ++ +        I V G     G+   S   ++ E+   Y+   V+++  +      
Sbjct: 458 KRAITSLRAANVRNVITVFG---CGGDRDASKRKEMGEIADTYS-DIVFVTNDNPRTEDP 513

Query: 413 -ALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + D    L      +             +   + D V++  
Sbjct: 514 YKILDDTMQLQNMCRRYVIVDRWYAIRGAIAMAGEDDAVLICG 556


>gi|3435169|gb|AAC32338.1| meso-diaminopimelate adding enzyme [Buchnera aphidicola]
          Length = 292

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/265 (20%), Positives = 94/265 (35%), Gaps = 20/265 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            I   PQ   + +S+DSR +  ++ F AIKG   DG+DFI  AV+K    ++  T     
Sbjct: 13  WIKNTPQKKFSNLSLDSRKLTSKDVFIAIKGTKKDGNDFIFEAVKKRVVAILSETKEKKK 72

Query: 78  IGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIAL- 130
            G +    +IP+     +   ++ LA            II +TG+ GKTT  +++     
Sbjct: 73  HGEINYINNIPILSFFKLSEKISNLAARVYKEPAKTLKIIGVTGTNGKTTVTQLINQWSE 132

Query: 131 -----SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRF 177
                 +   T               T + + +     I          + +S  G ++ 
Sbjct: 133 LLGKKIATMGTLGNGFYNALKTTKNTTSSAIDIQSFLHIAAKKKINLVTMEVSSHGLVQN 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +  +I + T +   HL     +++  SAK   F   +    I    D    + L+ 
Sbjct: 193 RVKNIPFYIGIFTNLTQDHLDYHKNMKQYESAKWSFFSQHKIKKIILNANDKYAKKWLRK 252

Query: 238 KSHALGIKTIYSFGKSKNADFQLRK 262
            S    I       K K    +   
Sbjct: 253 LSDKYTIAVTIQNEKQKKYSTKWIN 277


>gi|56416559|ref|YP_153633.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
 gi|81359238|sp|Q5PBF1|MURE_ANAMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|56387791|gb|AAV86378.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma marginale str. St. Maries]
          Length = 472

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/454 (13%), Positives = 128/454 (28%), Gaps = 56/454 (12%)

Query: 28  NGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +GI+ DSRS+ P   F  +    KG       F+  AV+ GA  +V            S 
Sbjct: 15  SGITADSRSVKPGFIFVCLSEAAKG-------FVPDAVKAGAKFIVAGNAGGLPHVDHSQ 67

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIA-ITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            +           KLA      S+   +A +TG+ GKT+  +           T A +G+
Sbjct: 68  -IIICPMQHDLYYKLASEFYHASQPEFVAVVTGTNGKTSVADFCRQIWCLTGHTGASMGT 126

Query: 143 YNNHIGVPLTLARMPVDVDFGIFE----------------LGMSHLGEIRFLTHLVRPHI 186
               +G     +         +                  +  S  G  +   + V+   
Sbjct: 127 LGAIVGNTTLPSSTSFTTPDAVELHKTLSTLRDLQVKYLCMEASSHGMAQKRLYGVKASA 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A  T ++  HL     +E+  + K ++F  +       +   ++  E           + 
Sbjct: 187 AAFTNLSGDHLDYHGSMEKYWATKQKLFSEVLSCEGCAV--LNADSEQYGELRELAAGRN 244

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I ++G         R  +     +           +     +G     N+L  L IV+  
Sbjct: 245 IITYGVDTGDVKLARLERNTQGHNITVKVCGEVIYDGAFPVLGKFQISNLLCALAIVAAS 304

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            +                      R  ++        ++      S+K            
Sbjct: 305 GSGHRDVPIDRLASPRGRMELIGDRIIIDYA---HTSDALKHALTSLKW---------HG 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420
              + + V G     G            +++      V ++  +  +       K+ +  
Sbjct: 353 FPQKTVLVFG----CGGDRDREKRKTMGMVASQYADVVIVTDDNPRSENPETIRKEIMLH 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
             +            +  +  +  + V++   K 
Sbjct: 409 CENAIEIPDRGDAIHYAVNFAIRNNYVLLIAGKG 442


>gi|148992580|ref|ZP_01822248.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|168484981|ref|ZP_02709926.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|168488808|ref|ZP_02713007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|147928597|gb|EDK79611.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae SP9-BS68]
 gi|172041891|gb|EDT49937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|183572773|gb|EDT93301.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae SP195]
 gi|332072323|gb|EGI82806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17570]
 gi|332200092|gb|EGJ14165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA47368]
          Length = 481

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 144/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVGIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+           + D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMVIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|302550801|ref|ZP_07303143.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
 gi|302468419|gb|EFL31512.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces viridochromogenes DSM 40736]
          Length = 506

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 85/475 (17%), Positives = 145/475 (30%), Gaps = 44/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +   S        V GI+ DSR++ P + + A+ G    G DF+  A   GA 
Sbjct: 17  LAELADQLG--SSAPESAAEVTGITHDSRAVRPGDLYAALPGARLHGADFVNQAAGLGAA 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            V+ +        +  +PV  VDD    + +LA             I ITG+ GKTTT  
Sbjct: 75  AVLTDPTGAERAAASGLPVLVVDDPRARMGELAATIYGHPGRDLLQIGITGTSGKTTTAY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGMSH 171
           ++   L +++ T              +   R   +                    + +S 
Sbjct: 135 LVEGGLKTVRSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSS 194

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +          I V T ++P H+   SG+E+   AKA++F        +    D+  
Sbjct: 195 HALVLGRVDGCVFDIGVFTNLSPEHMEFHSGMEDYFQAKAQLFTPKRGKLGVVNVDDEYG 254

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             L+           + ++    + D   R       Q      + G   E +       
Sbjct: 255 RRLVNEA-----TVPVVTYSAEGHPDADWRAEDVEVGQLDSTFTVVGPKGERISAKSPLP 309

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+  TL  +  L         A        G   R         +  + +  +    
Sbjct: 310 GPFNVANTLAAIVALAVAGLDPQAAADGVAAVPGVPGRLERVDAGQPYLAVVDYAH---- 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
              A  SVL  +    EG+   VLG     G+   +    +    +    + V  S    
Sbjct: 366 KTDAVESVLRALRKVTEGKLHIVLG---CGGDRDTTKREPMGAAAARLADTAVLTSDNPR 422

Query: 409 -FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               LA+   + +            V   E          +    GD V+V  K 
Sbjct: 423 SEDPLAILATMLQGAASVPAYERGEVQVFEDRAAAIAAAVARAEPGDTVLVAGKG 477


>gi|24380055|ref|NP_722010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus mutans UA159]
 gi|46577050|sp|Q8DST2|MURE_STRMU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24378047|gb|AAN59316.1|AE014997_6 putative UDP-N-acetylmuramoylananine-D-glutamate-2,6-
           diaminopimelate ligase; UDP-MurNac-tripeptide synthetase
           [Streptococcus mutans UA159]
          Length = 483

 Score = 94.9 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/476 (14%), Positives = 141/476 (29%), Gaps = 63/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++           P+   + IS DSR I     FF +KG  +   +F+  A++ G 
Sbjct: 16  NFREIIDGKHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       + IP+  V+++  A+  +A       + K   +A TG+ GKTT  
Sbjct: 74  TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
                 L    +            G     +++                   +   I E+
Sbjct: 129 YFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAVANGMTHLIMEV 188

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    +    + +   + V   I+P H+        E+    K  + +       + +
Sbjct: 189 --SSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLKHSR---YVIV 243

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N   + F L+K +           +  ++  + +   +    + +         S     
Sbjct: 244 NSQMNHFALIKEQVADQPHDFYGKYSDNQIINSKAFSFDLTGKLAGHYDIQLTGSFNQE- 302

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         +           +              G+        G    +D +
Sbjct: 303 ------------NAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLIQKNGAKVFVDYA 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N +         +LS +  H +G  I +LG     GE  ++   D   V++ +    V 
Sbjct: 351 HNGDSLE-----KLLSVVEEHQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQVI 402

Query: 406 LSG-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
           L+           +   +   I   V+             S    + D V++  K 
Sbjct: 403 LTADDPNNEDPQLISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKG 458


>gi|296117533|ref|ZP_06836117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
 gi|295969264|gb|EFG82505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium ammoniagenes DSM 20306]
          Length = 562

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 88/525 (16%), Positives = 158/525 (30%), Gaps = 88/525 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   L +  +G  IG      V+ I++DSR +  +  F A+ G    G +F        A
Sbjct: 4   TLKKLAEIARGEIIGDGT-VTVDAITLDSRLVESEHLFAAVPGTRTHGAEFAAQTS---A 59

Query: 66  GLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
             V+ +   V  +       S   P+  VDD+   L  ++           T++ +TG+ 
Sbjct: 60  KAVLTDAAGVDILNGSDTAESFDRPIIVVDDIRAVLGDISAEIYGHPTQNLTVLGVTGTS 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------- 166
           GKTTT  +L   L +   +   IG+    I       ++       + E           
Sbjct: 120 GKTTTTYLLESGLLAAGYSTGLIGTTGTRINRTPVDTQLTTPEAPTLQELFARMVDEGVT 179

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S           V   +   T ++  HL     +EE  SAKA++F G       
Sbjct: 180 HVVMEVSSHALDLGRVQGVDFAVGGFTNLSQDHLDFHPTMEEYFSAKAKLFVGNNAARHA 239

Query: 224 FLNYDDSFFELLKAKSHA---------------------------------------LGI 244
            +  +D + E L  +  A                                        G 
Sbjct: 240 VVCINDDWGERLADQVDAEDIPLTVVSTTGAIVHTGDEGSVAEADEMLRERTRELLVPGT 299

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +        + Q+        +S +      +S +      G     N  + +G+ S
Sbjct: 300 VVAWQQSVETTGEQQVALEINPPRESEVIQAEMARSFDFRLPLPGDFNIANAGLAVGMAS 359

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               D+DT I AL+            +       F  + + Y   PA+++A +  L    
Sbjct: 360 AAGIDLDTFITALTKVAVPGR----MQRIDEGQDFVAVVD-YAHKPAAIEAVLETLRSQL 414

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------------- 410
                     LG +   G    S    L    +      V ++  +              
Sbjct: 415 ESAGNTAQGRLGVVVGAGGDRDSSKRGLMGAAAAKAADFVVVTDDNPRTEDPAPIREAVM 474

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   R + +    +       + +   DGD V+V  K 
Sbjct: 475 AGAREAAEESNRPVEIVEIASRADAIDAVVNWAHDGDAVIVVGKG 519


>gi|56476232|ref|YP_157821.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diami no-pimelate ligase
           [Aromatoleum aromaticum EbN1]
 gi|56312275|emb|CAI06920.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase
           [Aromatoleum aromaticum EbN1]
          Length = 502

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 86/479 (17%), Positives = 159/479 (33%), Gaps = 51/479 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L+ +     G       +GI+ DSR + P E F A  G   DG  ++  A+++GA 
Sbjct: 6   AREILERL--RLSG----VVAHGITADSRRLQPGELFAAWPGFAADGRRYVAAAIERGAA 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+ +      + +LS+P   V  +      LA        SK  +  +TG+ GKTT  +
Sbjct: 60  AVLWDDSDGMRLEALSVPALPVSGLRSLGGFLAHEIHGCPSSKLWVAGVTGTNGKTTVSQ 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------IFE------LG 168
            L  AL+ +      IG+     G P  L                    + E      + 
Sbjct: 120 WLAAALAGLGLRCGVIGTLG--CGFPGELVDSGNTTPDALEVHRMLAAFVAESAGAAAME 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S +G  +   + V   +AV T +   HL   S +E  A AKA +F+       +    D
Sbjct: 178 VSSIGLDQERVNGVEFDVAVFTNLTRDHLDYHSSMESYAVAKARLFDLPGIGAAVINFDD 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-------KWKQCSEQSWMEVQLQGKSM 281
           D        +  A G+  I      + AD             +         +   G   
Sbjct: 238 DFGLAQ-ARRLAASGMPVIGYTRFVERADAVPGARVLVAASEQNVPSGLRFVLGWDGGHH 296

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V    +      N++  +G + +    +D  ++++S   P  GR +             
Sbjct: 297 TVQVRMVAPFNVSNLMAVIGSLLVRDVPMDDIVRSVSRLTPPAGRMQLVGGVGEPLVVID 356

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               Y  +P ++   +  +   +    GR + V G     G    +    +   ++    
Sbjct: 357 ----YAHSPDALAQVLEAVRSTAQGRGGRLVCVFG----CGGDRDAGKRPMMGDVARALA 408

Query: 402 SHVWLSGFHVL-----ALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             V ++  +        + DA+      +                     DV+V+  K 
Sbjct: 409 DRVIVTSDNPRSEDPLKIIDAIVRGAGPNAERIVDRAQAIRIAVGEAGANDVIVLAGKG 467


>gi|91977865|ref|YP_570524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
 gi|91684321|gb|ABE40623.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris BisB5]
          Length = 490

 Score = 94.9 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/453 (16%), Positives = 141/453 (31%), Gaps = 34/453 (7%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
                 V G+++DSR++ P + FFA+ G   DG  FI  A+  GA  V  +    A  G 
Sbjct: 21  GAADLDVGGLAVDSRAVKPGDLFFALAGAKTDGARFIAAAIAAGAVAVAGDH---APDGE 77

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           L++P   + +   AL   A     R   TI A+TG+ GKT+           +    A I
Sbjct: 78  LAVPFVPLGNPRRALALAAARFYSRQPRTIAAVTGTSGKTSVAAFTRHIWQRLGHAAASI 137

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHI 186
           G+             +       +                L  S  G  +F    VR   
Sbjct: 138 GTIGLVTPTRSVYGSLTTPDPIALHRSLDEIAGEGVTHLALEASSHGLDQFRLDGVRVAA 197

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              T ++  H+     +    +AK  +F  L   G   +   D         +       
Sbjct: 198 GGFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVIDGGAAVISADHDCSAQVIDAARARGLR 257

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + + G++ +A   +R  +   +    ++ ++        H         +   L    ++
Sbjct: 258 LITVGRNGDAGEGIRLIEASIDGFAQKLTIEHAGRRTAVHL-PLVGEFQIENALVAAGLV 316

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                    A +     EG   R      +    +  +  +   A        L  + P+
Sbjct: 317 IGAGGDPAAAFAALDHLEGAPGRLDFVGERRGAPVFVDYAHKPDA----LAKALQALRPY 372

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPR 420
            + + + V G     G    +    L   ++  N   + ++  +  +          L  
Sbjct: 373 AKRKLVVVFGA----GGDRDAGKRPLMGAIAAGNADSIIVTDDNPRSEDPAAIRAAILAA 428

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                 ++L  GD +++  K 
Sbjct: 429 APGAREIGDRAEAIRTAIAALAPGDALLIAGKG 461


>gi|311113335|ref|YP_003984557.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
 gi|310944829|gb|ADP41123.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2 [Rothia dentocariosa ATCC
           17931]
          Length = 572

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 72/503 (14%), Positives = 141/503 (28%), Gaps = 59/503 (11%)

Query: 6   TFHDL---LQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +L   L+A+  H        +  V GIS+DSR++ P + + A+ G    G  F   A
Sbjct: 33  TVTELVEHLEALGAHPVLEHQSSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLG-ALNKLAVAARLRSKAT---IIA 112
           ++  A  ++ +T  V  I   ++ +      V D L   +  LA               A
Sbjct: 93  LEAQAHAILTDTAGVRMIREANLSLDRCSLLVCDSLRPVIGSLAALIYGSQDYKGLNRYA 152

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVP-----------LTLARMPVD 159
           +TG+ GKTTT  ML     +  K              GV               + + + 
Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212

Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + G+    M  S           V   ++  T +   HL     ++    +KA++F   
Sbjct: 213 GECGVSHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPE 272

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----------LRKWKQCS 267
                +    D+   ++L+     LG                                  
Sbjct: 273 RTERAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVER 332

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +       L   + + +          N+        ++        + +      +G  
Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTA 392

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                       +L   +      +       L  +   G GR I V G   E       
Sbjct: 393 LTPIVPGRMQLISLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGE----RDH 448

Query: 388 FHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-----------PRSIHVHYSETMD 431
               L   ++  +   V ++     G     +++A+            R+  +      +
Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508

Query: 432 GLFLFIQSSLVDGDVVVVKSSNS 454
                        D +++     
Sbjct: 509 VAIARAIELADARDAILIAG-RG 530


>gi|254281947|ref|ZP_04956915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
 gi|219678150|gb|EED34499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [gamma proteobacterium NOR51-B]
          Length = 484

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/478 (15%), Positives = 150/478 (31%), Gaps = 52/478 (10%)

Query: 1   MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M   + +  +L+  +            ++ I++DSR++AP   F A+ G   DG  FI  
Sbjct: 1   MTLAVKSLAELID-VPAEL----GSVAISDITLDSRAVAPGAVFVAMPGGESDGRGFIDD 55

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSV 117
           A++ GA  V+   D +A        V  V  +      +A        A   ++A+TG+ 
Sbjct: 56  ALRAGAAAVLAEADGLAQQHP---KVIAVPALRSRCGDIARRGFGDVSARMALVAVTGTN 112

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNH---------------IGVPLTLARMPVDVDF 162
           GKT+  ++    L  +      IG+  +                  +  TLA    +   
Sbjct: 113 GKTSIADITAQLLRGLGVKTGTIGTLGSRTNTVAATAVNTTPDVFTLHRTLAAWHAEDID 172

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +     SH      L  L      + T ++  HL          +AK  +      +  
Sbjct: 173 HVVLEASSHALSQERLAGLT-LRTGIFTNLSRDHLDYHEDERAYLAAKLRL-----FSDY 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                  +  + + ++   +          S        +++       + +     +  
Sbjct: 227 PLQYAIYNADDPMASEVRTVASCPTLGISMSSAEADVFAQFEVLQSGLNITLHAPYGTAS 286

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G   A N++  +   + L  D +  +  L       GR    R A  Q    ++
Sbjct: 287 AETPLSGTFNAFNVVAAVMAATTLGYDFEQVMALLPTLKTVPGR--MQRVASPQELAVVV 344

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++     ++      +  + P   G    V G     G             ++     
Sbjct: 345 DYAHTPEALAV-----AIEALRPGCTGELWLVFG----CGGDRDRGKRAQMGRIAATLAD 395

Query: 403 HVWLSGFHVLA-----LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +     + D + + I       E   G  +    +   GDVV++  K 
Sbjct: 396 RVVVTSDNPRSEAPERIIDDILKGIDGPAVVVEDRRGAIMHALGAARPGDVVLIAGKG 453


>gi|315504601|ref|YP_004083488.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
 gi|315411220|gb|ADU09337.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora sp. L5]
          Length = 507

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 153/471 (32%), Gaps = 49/471 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            V G++  S+ + P + + A+ G    G +F   A + GA 
Sbjct: 15  LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++ +   VA      +PV  V D   AL ++A           T+I +TG+ GKT+T  
Sbjct: 75  ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           ++   L +       IG+    +G                  +        VD  + E+ 
Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEV- 193

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH   +  +   VR  +   T     HL   +   +  +AKA++F+G  +     LN+D
Sbjct: 194 SSHALAMGRV-GGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L    H  G  T  + G      +      +   Q +      G ++       
Sbjct: 251 DPALRPL----HKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALP 306

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+ + ++  +  D +TA + ++      GR +                  NA
Sbjct: 307 GRHNVANALLAVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRGVVDYAHKANA 366

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL  +    EGR I VLG     G         +   ++      V ++ 
Sbjct: 367 -------IEAVLIALRDLTEGRLICVLGA----GGDRDRGKRPVMGGVAARGADVVLVTD 415

Query: 409 -----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    A++  +            V                   GDVV
Sbjct: 416 DNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRMAEPGDVV 466


>gi|282899876|ref|ZP_06307837.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195146|gb|EFA70082.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 495

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/475 (16%), Positives = 149/475 (31%), Gaps = 40/475 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL  I G          V GI  +S +    + F  I G   DG +F   A+  G
Sbjct: 1   MNLRELLAVIDGVEYQGK-DVEVRGIKTNSHACGEGDLFIGIPGTRVDGGEFWPSALAAG 59

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           A   +++    +         V     +     ++  A       K  I+ +TG+ GKTT
Sbjct: 60  AVAAIISPQAASKTPPTSDALVITATSLNKVCAQVCAAFYGYPAEKLQIVGVTGTNGKTT 119

Query: 122 TKEMLTIALSSIK---------KTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE--L 167
           T  ++   L+             T     S   +   P        +   VD G     +
Sbjct: 120 TTHLIEYFLNQANLPAALLGTLYTRWTGFSQVANRTTPFAIDLQHNLAQAVDAGCQLGIM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++         ++V T +   HL     +E+   AKA +F      G   +N 
Sbjct: 180 EVSSHSLVQDRVFGCPFEVSVFTNLTQDHLDYHQDMEDYFRAKALLFTPDYLQGRAVINI 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + + L         +       + +ADF +             +     +       
Sbjct: 240 DDHYGQRL--TIGLDKQQLWTYSINNTSADFWVSDLNYQPHGVSGILHTPEGNSPFSSPL 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +  +N+L  +  V  L  D++T +  +  F    GR +R +   +Q    ++D ++ 
Sbjct: 298 VGQYNLENLLAAVAAVLHLGLDLETVVDYIPNFPGVPGRMERIQINPHQDISVIVDYAHT 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +        ++L    P   GR I V G     G             ++      V ++
Sbjct: 358 PDSLE-----NLLKAARPFIPGRMICVFG----CGGDRDKTKRPKMGRIAADLADVVVVT 408

Query: 408 GFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            +   +P  +                     GD V++  K 
Sbjct: 409 SDNPRTENPDAILEDILTGMPEDVSRLVIGDRARAIHTAILEAQPGDGVLLAGKG 463


>gi|171057208|ref|YP_001789557.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptothrix cholodnii SP-6]
 gi|170774653|gb|ACB32792.1| UDP-N-acetylmuramyl-tripeptide synthetase [Leptothrix cholodnii
           SP-6]
          Length = 513

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 143/461 (31%), Gaps = 46/461 (9%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            DSRS+   EAF A  G   DG  ++  A+  GA   ++  D  A+ G     +  +  +
Sbjct: 28  TDSRSVRAGEAFIAWPGHAADGRAYVGAALAAGAAACLIEADGAAAFGFDDERIAALPGL 87

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTY------------ 137
             A  +LA            +IA +G+ GKT+T      ALS   +              
Sbjct: 88  KAATGELAHRWYGEPGRRLALIATSGTNGKTSTAWWTAQALSLAGQRCGVIGTLGVGEPP 147

Query: 138 --ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                 +  +  G+            R   D  F    +  S +G +          +A+
Sbjct: 148 SRVHPDAQVHATGLTTPDPLTLHRSLRDFADAGFAACAIEASSIGIVEHRLDAAPIRVAL 207

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T   P HL     +                     +N DD+   +L  +  A G   ++
Sbjct: 208 YTNFTPDHLDYHGDMVAY-WLAKRALFDWPGLQAAAINVDDAQGAVLADELAARGDLDLW 266

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++   ++A  +              +      + V  H IG + A N+L  +G +  L  
Sbjct: 267 TYALHRDARLRATGLHYVDGGLAFTLHEGETDVAVHTHLIGAYNASNVLAVIGGLRALGL 326

Query: 309 DVDTAIKALSVFHPKEGRGKRYRC-------ALNQGFFTLIDESYNANPASMKAAISVLS 361
            +  A    + F    GR  R R                 +   Y   P ++  A+S L 
Sbjct: 327 PLAQAAALAAEFTSVPGRMHRVRPASPTGAVPQVVVALPQVVVDYAHTPDALDKALSALR 386

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            ++    GR + V G     G    +        ++      V ++  +           
Sbjct: 387 PVAHAQGGRLVCVFG----CGGNRDATKRPQMGAIAAQLADAVCVTSDNPRLEEPQAIVD 442

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +      + HV            + +     DVV++  K 
Sbjct: 443 QILAGCAGAAHVRAEVDRTRAIEQVLAQAAPEDVVLIAGKG 483


>gi|291549494|emb|CBL25756.1| UDP-N-acetylmuramyl-tripeptide synthetases [Ruminococcus torques
           L2-14]
          Length = 488

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 84/479 (17%), Positives = 139/479 (29%), Gaps = 53/479 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL+ +    +       V  +  DSR +     F  I G   DGH +      KG
Sbjct: 1   MKLDKLLERLDYTVVQGSDSTEVTTLINDSRKVEEGSVFVCISGAVSDGHKYAADVAAKG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
           A  VVV  D+       ++ V  V+D   AL  ++ A       K  +I ITG+ GKTTT
Sbjct: 61  AAAVVVEKDVEV---PENVTVIKVEDTRYALALMSAAYFGYPADKMKVIGITGTKGKTTT 117

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFE 166
             M+   L         IG+    IG                       +    D  + E
Sbjct: 118 TYMIKSILEETGHKVGLIGTIEAIIGDKKIPSCNTTPESYTIHKYFAEMVEAGCDCVVME 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +  S  G +   T  +   I + T +   H+              +              
Sbjct: 178 V--SSQGLMLHRTAGIPFEIGIFTNLGRDHIGP-----NEHKDFDDYKRCKGLLFKQCKL 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQLQGKSMEV 283
              +  +             I +FG S  AD +    +  S   +             +V
Sbjct: 231 GIANVDDKYFKDVFKGSTCKIETFGFSPEADLRAENVELVSRPGYLGVAYHVAGVMDFDV 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G     N L  + +       V+    AL           R         FTL+ 
Sbjct: 291 EIDVPGKFSVYNSLTAISVCRHFQVPVEMIKDALKKAK----VKGRIEMIKVSDDFTLMI 346

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +       +  S+L+ +  +   R + + G     G  S+    ++ EV        
Sbjct: 347 DYAHNA----MSLESLLTTLKEYNPKRLVCLFG---CGGNRSKDRRFEMGEVSGRLADLT 399

Query: 404 VWLSG----FHVLALKDALPRSI---HVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  S          + + +   I      Y E         +       GDV+V+  K 
Sbjct: 400 IITSDNPRFEEPQDIINDIKTGIAKTDGKYVEICDRKEAIKYAIEHGEPGDVIVLAGKG 458


>gi|285019578|ref|YP_003377289.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Xanthomonas albilineans GPE PC73]
 gi|283474796|emb|CBA17295.1| probable udp-n-acetylmuramoylalanyl-d-glutamate-2,6-diaminopimelate
           ligase protein [Xanthomonas albilineans]
          Length = 494

 Score = 94.5 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/455 (16%), Positives = 145/455 (31%), Gaps = 39/455 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +  V+G+++DSR++ P +AF AI G    G  F+  A   GA  ++      A + + + 
Sbjct: 19  EVQVSGLAMDSRAVRPGDAFVAIAGFGAHGLSFVEQARANGAVAILFEPPAPADLPASAD 78

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
               V  +   +  +A           T++ +TG+ GKT+  ++LT A   +        
Sbjct: 79  A-IAVPGLRARMGAMADQLHGHPSQAMTMVGVTGTNGKTSIVQLLTQAWHVLGTCSGSIG 137

Query: 137 --------YACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                         +   + +P   L     D       + +S     +     V   +A
Sbjct: 138 TLGAGLYGRVLPTGFTTPLVLPLHALLAQLRDAGAQAVAMEVSSHALDQGRVDAVHFDVA 197

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           V T +   HL     +    +AKA +F        +    D    +LL A   AL    +
Sbjct: 198 VFTNLTRDHLDYHRDMAAYGAAKARLFAMPGLRAAVVNLDDTFGRQLLHALDPALRRIGV 257

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S G+   A  +       +     ++ +  +   +    +G     N+L   G +  L 
Sbjct: 258 SSRGR-DGATVRAEALHLDARGIGFDLVVGTQRHALQSPLLGRFNVDNLLAVAGALYALD 316

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    L+   P  GR    R         ++ +  +   A        L  +  H 
Sbjct: 317 VPPVRIAATLAQLQPIRGR--MNRLGGRDAQPLVVVDYAHTPDA----LEQALQSLRDHA 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDAL 418
           +GR + V G     G    +        ++     +V+++  +            +    
Sbjct: 371 KGRLLCVFG----CGGERDAGKRPQMAAIAQRLSDYVFVTDDNPRGEDGERIVADILAGF 426

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                V              +     D+V++  K 
Sbjct: 427 DGMTTVQVQRERAQAIAAAIAMAGAEDIVLIAGKG 461


>gi|258593041|emb|CBE69352.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [NC10 bacterium 'Dutch sediment']
          Length = 568

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 133/365 (36%), Gaps = 17/365 (4%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
                +     R R    +I ITGS GKTTTK +    L      +      N  +G+  
Sbjct: 200 RRFYAQATARMR-RYPGEVIGITGSYGKTTTKFITAALLHGRYPVFKTPDGVNTTMGIVR 258

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +  D  F + E+     GEIR +  ++RP I ++T +   HL  F   E IA AK
Sbjct: 259 VVREGLRDDHRFFVVEVAAYGPGEIREVCEVLRPRIGILTAVGVQHLERFGTPERIAEAK 318

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSE 268
            E+ + L   G   +N DD     L  ++   G +          +    + +     S+
Sbjct: 319 YELIDSLPPDGLAIVNADDPVCLRLAERARQEGRRVLLYGIGEDERALGVRGKDVTLSSK 378

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            S   V+    +       +G     N+L            ++     +    P   R +
Sbjct: 379 GSAFRVETGHGAAMFETRLLGGWNIGNILGATAAALECGVPLEEIAAGVRALAPAPKRLE 438

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                        + +  NANP   + A+ VLSQ      G +I +   + E+G++    
Sbjct: 439 IREEGG----VIKLIDVANANPRGAQMALEVLSQF---EGGSKILITPGLVELGQIEAEE 491

Query: 389 HIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           +  L    +     +V L G          L++A      V  +   D +   +++ + +
Sbjct: 492 NRRLGRAAAAV-CDYVVLVGPQQTQPLQEGLREAGFSGSRVLIARHADEVADCLKAIVCE 550

Query: 444 GDVVV 448
           GDV++
Sbjct: 551 GDVLL 555


>gi|156342934|ref|XP_001620981.1| hypothetical protein NEMVEDRAFT_v1g222497 [Nematostella vectensis]
 gi|156206509|gb|EDO28881.1| predicted protein [Nematostella vectensis]
          Length = 279

 Score = 94.2 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 21/299 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +G +H  EI FL  +  P    IT    AHL  F GIE +   K+E++  LEK       
Sbjct: 1   MGANHQKEIDFLCSIAEPDFGYITNFGKAHLEGFGGIEGVIKGKSELYNYLEKNEKTIFV 60

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D   +     +        YSF    ++D ++   +         V +   ++++  +
Sbjct: 61  NLDDTLQ-----NEKTKKLKRYSFSTQNSSDIKIDTIEANP-----MVIIGFNNLKIHSN 110

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG + A N+   + I      +     +A+  + P   R +      N+    +I ++Y
Sbjct: 111 LIGIYNANNINAAITIGKYFNIEDALIKEAIESYIPSNNRSQLITKGSNE----IILDAY 166

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP+SM AAI+    I    + +++ +LGDM E+G+ S   H  +  +L+   +   + 
Sbjct: 167 NANPSSMLAAITNF--IQLITDKKKVLILGDMFELGKESIEEHKKIVTLLAETKLIS-FC 223

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVVVVKSSNSCGFYRLINLL 464
            G       +    S  +H+ +  +     + +   ++ +++++K S      R+++LL
Sbjct: 224 IGAL---FFENKIDSPTIHFHKDFESFSKELNKDYSLENNLILIKGSRGMALERVLDLL 279


>gi|302528474|ref|ZP_07280816.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
 gi|302437369|gb|EFL09185.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. AA4]
          Length = 519

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 163/486 (33%), Gaps = 57/486 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL T   L +A     I   P      V G ++ ++ + P + F  + G    G DF   
Sbjct: 22  PLATL--LARA-GARLIADRPEAADLTVTGTTLRAQHVLPGDLFAGLPGARAHGADFSDQ 78

Query: 60  AVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
           A+  GA  V+ +       ++    +PV    D   AL ++A            ++ +TG
Sbjct: 79  ALAAGAAAVLTDPSGADRPALRDAPVPVLVHPDPRAALGEIAAWIYGEPSLHLSVLGVTG 138

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFG 163
           + GKTTT  ++   L +  +T   IG+                   P   A + V ++ G
Sbjct: 139 TSGKTTTSYLVDSGLRAAGRTTGLIGTVETRIAGERLASGFTTPEAPDLQALLAVMLERG 198

Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +  + M  S         +  R  +   T ++  HL     +EE  +AK+ +F+G   T 
Sbjct: 199 VTHVPMEVSSHALALGRVNGTRFAVGAFTNLSQDHLDFHKDMEEYFAAKSLLFDGRSTTE 258

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + ++         +A      +      G          +     EQ++  +   G S 
Sbjct: 259 VVVVDSAWG-----QALLTPQTVTVSIEAGADALWRAADIEATPAGEQTFTLLGPDGLSR 313

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N ++   I++    D D  +  L+     E  G+  R  L Q F  +
Sbjct: 314 AAKIPLPGTFNVANAVLAAAILASAGIDADDIVAGLA---AVEVPGRMERVYLGQEFTAV 370

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++     +       L  +    EGR I VLG     G    +    +    ++   
Sbjct: 371 VDYAHKPAAVA-----QGLDALRARTEGRIITVLG----CGGDRDTAKRPMMGEAAVRRS 421

Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + ++          A++ A+              V              S    GD+V
Sbjct: 422 DLLIVTDDNPRSEDPAAIRAAMLAGARAVGPAAGGEVLEIADRREAIAHAVSLAGPGDIV 481

Query: 448 VV--KS 451
           ++  K 
Sbjct: 482 LIAGKG 487


>gi|302868929|ref|YP_003837566.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
 gi|302571788|gb|ADL47990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Micromonospora
           aurantiaca ATCC 27029]
          Length = 507

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 88/471 (18%), Positives = 153/471 (32%), Gaps = 49/471 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DL   +            V G++  S+ + P + + A+ G    G +F   A + GA 
Sbjct: 15  LGDLADRVAATPPEEAADLAVTGVTHASQEVRPGDLYAALPGARRHGAEFAAAAAEAGAV 74

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            ++ +   VA      +PV  V D   AL ++A           T+I +TG+ GKT+T  
Sbjct: 75  ALLTDPAGVALAAGTGLPVLVVADPRDALGEVAATVYGDPTAGLTVIGVTGTAGKTSTSY 134

Query: 125 MLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELG 168
           ++   L +       IG+    +G                  +        VD  + E+ 
Sbjct: 135 LVESGLRAAGHVTGLIGTVETRLGDLVIDSVRTTPEATDLHAMLAVAREHGVDTVVMEV- 193

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH   +  +   VR  +   T     HL   +   +  +AKA++F+G  +     LN+D
Sbjct: 194 SSHALAMGRV-GGVRFDVGGYTNFGSDHLDFHADEADYFAAKAKLFDG--RCRVEVLNHD 250

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L    H  G  T  + G      +      +   Q +      G ++       
Sbjct: 251 DPALRPL----HKPGTVTYSAAGDPDATWWADGIDGEGYAQRFTLHGPDGLALPTGVALP 306

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+ + ++  +  D +TA + ++      GR +                  NA
Sbjct: 307 GRHNVANALLAVALLVAVGVDPETAARGVAACGGVPGRLELVSGDAPVRGVVDYAHKANA 366

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    +VL  +    EGR I VLG     G         +   ++      V ++ 
Sbjct: 367 -------IEAVLIALRDLTEGRLICVLGA----GGDRDRGKRPVMGGVAARGADVVLVTD 415

Query: 409 -----FHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    A++  +            V                   GDVV
Sbjct: 416 DNPRTEDPAAIRAEVLAGAYAAATPARVIEVPGRRAAIEEAVRVAEPGDVV 466


>gi|110634362|ref|YP_674570.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium sp. BNC1]
 gi|123162148|sp|Q11GS0|MURE_MESSB RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|110285346|gb|ABG63405.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Chelativorans sp. BNC1]
          Length = 483

 Score = 94.2 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 80/502 (15%), Positives = 160/502 (31%), Gaps = 60/502 (11%)

Query: 5   WTFHDLLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +    +   G   G   +  ++G++ DSR +   + FFA++G   DG  +   A  
Sbjct: 1   MKLGEFADILPLSGSIAG---ETTISGLASDSRRVNAGDLFFALQGSKADGAAYAADAAG 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA  ++       ++G + +PV   DD    L   +        AT++A+TG+ GKT+ 
Sbjct: 58  RGAVAIIA---RPGTVGDVGVPVIEADDPRHVLALASARLYGAQPATMVAVTGTSGKTSV 114

Query: 123 KEMLTIALSSI---------KKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFE--LG 168
                                   A        +  P        +    D G+    + 
Sbjct: 115 AAFTRQIWEKAGLAAASIGTTGVVAPGRDEYGELTTPDPVSLHKLLRELADAGVTHASME 174

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +     V+      T +   H+     +E    +K  +F+ L   G   + + 
Sbjct: 175 ASSHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEHYHQSKMRLFKTLLPKGAPAVIFA 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D  +     K        + + G+       +++ +    +   E++ +G   +++    
Sbjct: 235 DDPWSEPTEKVALAAGLQLLTVGRRGTF-LTIKRVEHERHRQRTEIEHEGMIYDIMLPLA 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N L+  G+        D A+ AL       GR +        G    +D ++  
Sbjct: 294 GDFQVGNALVAAGLAISTGLPADKAVAALEHLKGASGRLELT-GTTEDGAQIYVDYAHKP 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +        +VL  + P   GR I V G     G         +   ++      V ++ 
Sbjct: 353 DALE-----NVLQAVRPFTTGRVIVVFG----CGGDRDPGKRPIMGEIARRLADVVIVTD 403

Query: 409 FHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSSN---- 453
            +           A+ +A+P +  +              + L  GD ++V  K  +    
Sbjct: 404 DNPRSEVPAEIRRAILEAVPEATEI---GDRREAIRTAVAMLNSGDTLIVAGKG-HEIGQ 459

Query: 454 ---SCGF-----YRLINLLLEE 467
                         +   L E 
Sbjct: 460 EIAGTKLPFSDHEEVRRALKER 481


>gi|300741260|ref|ZP_07071281.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
 gi|300380445|gb|EFJ77007.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rothia dentocariosa M567]
          Length = 572

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 71/503 (14%), Positives = 142/503 (28%), Gaps = 59/503 (11%)

Query: 6   TFHDL---LQAIQGH--SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           T  +L   L+A+  H        +  V GIS+DSR++ P + + A+ G    G  F   A
Sbjct: 33  TVTELVEHLEALGAHPVLEHQGSEEDVRGISMDSRAVRPADLYVALPGAKAHGAQFAQKA 92

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLG----ALNKLAVAARLRSKATIIA 112
           ++  A  ++ +T     I   ++ +      V D L     +L  L   ++        A
Sbjct: 93  LEAQAHAILTDTAGARMIREANLSLDGCSLLVCDSLRPVIGSLAALIYGSQDHKNLNRYA 152

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVP-----------LTLARMPVD 159
           +TG+ GKTTT  ML     +  K              GV               + + + 
Sbjct: 153 VTGTNGKTTTTYMLESVFRTALKAKTGLIGTIQILVDGVSVPSALTTPESVHVHSLLAIM 212

Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + G+    M  S           V   ++  T +   HL     ++    +KA++F   
Sbjct: 213 GERGVSHAAMEVSSHAIDYHRVDGVVYKVSGFTNLTQDHLDLHGTMQNYFDSKAQLFTPE 272

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ----------LRKWKQCS 267
                +    D+   ++L+     LG                                  
Sbjct: 273 RTECAVITADDEWGEKMLRHAQIQLGTGNAVRLVTEYGMGLAEVPAEFGPLDWAVINVER 332

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +       L   + + +          N+        ++        + +      +G  
Sbjct: 333 DGLGHRFTLANGAGDTIPCCTHLPADFNVSNAALAALMVYIGASEEERIILRPALADGTA 392

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                       +L   +      +       L  +   G GR I V G   E       
Sbjct: 393 LTPIVPGRMQLISLAPHTIVDFAHNPDGLTRALEAMDRPGGGRVIIVFGATGE----RDH 448

Query: 388 FHIDLAEVLSLYNISHVWLS-----GFHVLALKDAL-----------PRSIHVHYSETMD 431
               L   ++  +   V ++     G     +++A+            R+  +      +
Sbjct: 449 LKRPLMGEIAAQHADIVIVTDDDPHGEDPAPIREAVVAGAERANAEGARASQILNLAPRE 508

Query: 432 GLFLFIQSSLVDGDVVVVKSSNS 454
                        D +++     
Sbjct: 509 VAIARAIELADARDAILIAG-RG 530


>gi|293375435|ref|ZP_06621716.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325844415|ref|ZP_08168142.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
 gi|292645988|gb|EFF64017.1| Mur ligase family, glutamate ligase domain protein [Turicibacter
           sanguinis PC909]
 gi|325489089|gb|EGC91473.1| Mur ligase middle domain protein [Turicibacter sp. HGF1]
          Length = 543

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 90/365 (24%), Positives = 153/365 (41%), Gaps = 17/365 (4%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           LG +N      +      +I +TGS GKT+TK  L   LS    T     SYN  +G+ +
Sbjct: 179 LGFINDARRIVKSSKDLDVIGVTGSYGKTSTKHALNAILSEQFNTLMTPESYNTPMGITI 238

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           T+   +       I E+G   +GEI  L  +  P   V+T++ P HL  F  I+ +   K
Sbjct: 239 TIRNFLKPIHSKFIAEMGAYKVGEINELCEIAYPKYGVLTSVGPQHLETFKTIDNVKQTK 298

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E+ E L + G  F+N DD             G   +Y++G  + AD++    +   + +
Sbjct: 299 FELIEYLPEDGIGFINIDDENIRDYYENKFQ-GKCKVYTYGIEREADYRASDIEVSEKGT 357

Query: 271 WMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              V  +   +E      +G H   N L ++G+   L   V+    A+    P   R + 
Sbjct: 358 TFNVHFKDGRVETFQTKLLGLHNIYNTLASIGLGYELGIPVEKMQMAVRKMKPVTHRLEL 417

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R     G FT+ID+++N+NP   K A+ VL Q+     G+RI +   M ++G      +
Sbjct: 418 RR----NGNFTIIDDAFNSNPVGSKMALEVLGQM----NGKRIVITPGMVDLGTAQYDLN 469

Query: 390 IDLAEVLSLYNISHVWLSG-FHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDG 444
                 +   N  +V L G      +   L    +    ++ +E +   F  +   +  G
Sbjct: 470 KAFGTYMKD-NCDYVILVGKKQTEPIYAGLMEVEYPTETIYVAENLQDAFAKMHEVVEPG 528

Query: 445 DVVVV 449
             V++
Sbjct: 529 AFVLL 533


>gi|269959024|ref|YP_003328813.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
 gi|269848855|gb|ACZ49499.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase
           [Anaplasma centrale str. Israel]
          Length = 489

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 70/457 (15%), Positives = 139/457 (30%), Gaps = 59/457 (12%)

Query: 27  VNGISIDSRSIAPQEAFFAI----KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           V+GI+ DSR++ P   F  +    K        F+  AV+ GA  +V  +         +
Sbjct: 27  VSGITADSRNVKPGFVFVCLSEVAK-------KFVSDAVKAGARFIVAGSAEALPRVD-N 78

Query: 83  IPVFGVDDVLGALNKLA-VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
             +           KLA    R R    + A+TG+ GKT+  +           T A IG
Sbjct: 79  AQIIIFPKQHDFYYKLASAFYRGRQPEFVAAVTGTNGKTSVADFCRQIWHLTGNTGASIG 138

Query: 142 SYNNHIG------------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           +    +G                  +  TL+ +       +  +  S  G  +   + V+
Sbjct: 139 TLGTAVGGIVTPYGSTLLTTPDAMELHKTLSELYNSHVKYLC-IEASSHGMAQKRLYGVK 197

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A  T ++  H     G+E+  +AK ++F  +       +   DS           +G
Sbjct: 198 VSVAAFTNLSRDHSDYHGGMEKYWAAKRKLFSEVLSHEGCAVLNADSG--RYAELRRLVG 255

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   ++G +       R        +           +     +G     N+L  L IV
Sbjct: 256 SRNTITYGINVGDVRLTRLKSSTLGHNVAVEICGKVVYDGAFPVLGKFQIPNLLCALAIV 315

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                                 +    R  +      +I + Y   PA+++ A++ L   
Sbjct: 316 ---------TASGARCSDIPIDKLVSPRGRMELIGGRVIVD-YAHTPAALEHALTSLKWH 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDA 417
                 + + V G     G            +++      + ++  +          K+ 
Sbjct: 366 --GFPQKIVLVFG----CGGDRDREKRGAMGMVAGKYADVIIVTDDNPRNENPEAIRKEI 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           L                 +  +  V  D +++   K 
Sbjct: 420 LSHCERAIEIPNRSDAIHYAVNFAVRNDHMLLIAGKG 456


>gi|148241723|ref|YP_001226880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
 gi|147850033|emb|CAK27527.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Synechococcus sp. RCC307]
          Length = 494

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 150/475 (31%), Gaps = 44/475 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H L++         +P   V   S DSR I P   F  + G   DG  F   A+Q+GA 
Sbjct: 8   LHLLIRDAGLSVPQQLPDPVVTDFSCDSRRIRPGTLFVGLPGGRVDGGSFWRAALQQGAT 67

Query: 67  LVVVNTDM----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             V+  D       + G   + V             A       + ++I +TG+ GKTTT
Sbjct: 68  AAVIGPDAAQQEPPAPGDPVLVVADPVAAAAGRLAAAFWNHPSDQLSLIGVTGTNGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
             ++     +     A +G+  N    P           F                 +  
Sbjct: 128 THLIEHLALACGSPTALMGTLANRW--PGHSRNAVHTTPFADQLQADLAAAKAAGCSMAA 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +      R   AV T ++  HL     +E+   AKA++F      G   +N
Sbjct: 186 MEVSSHALDQSRVAGCRFSGAVFTNLSQDHLDYHPTLEDYFEAKAQLFAAPYLKGQAVVN 245

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L  +   LG +   S  +  +A+  +   +  +      +      +     
Sbjct: 246 SDDLHGRQLAQR---LGDQCWRSSLEDSSAELFMDGLQFSATGVKGVLHGPSGDVPFQSP 302

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N+L  +G++       D  ++AL  F+   GR +R     +Q    +     
Sbjct: 303 LVGRFNLMNLLQAVGVLLQHGLPCDGLLQALESFNGVPGRMERVPHRSDQPAVLVDYAHT 362

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      + L    P  EG+ I V G     G+  +S    +  + +      V  
Sbjct: 363 PDGLD------NALQAARPFAEGKLICVFG---CGGDRDRSKRPQMGAIAAQLADELVVT 413

Query: 407 SG----FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           S          + D     +P                        GD+V++  K 
Sbjct: 414 SDNPRTEDPQQILDDVVAGIPAESACVVVADRAAAIAQAIGQAKAGDLVLIAGKG 468


>gi|293402023|ref|ZP_06646162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304415|gb|EFE45665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate
           ligase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 489

 Score = 93.8 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 75/485 (15%), Positives = 138/485 (28%), Gaps = 65/485 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +   ++LL    G          +  G+S DSR +     F   KG  +DG  +I  A++
Sbjct: 1   MTRLNELL----GMLHIACDDTRILQGVSDDSRKVKKDWLFVCRKGITHDGAAYIDDALR 56

Query: 63  KGAGLVVVNTDMVASIGSLSI---------PVFGVDDVLGALNKLAVAARLRS--KATII 111
           KGA  V+ +           +          V+  +DV      L             +I
Sbjct: 57  KGAV-VLCDKKRQWRKNGQKVEATSHQEKEQVYACEDVEAIAQALIELYFGDLCKHLCVI 115

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT----------------LAR 155
            ++G+ GKT+   ++T  L   +K    IG++       +                    
Sbjct: 116 GVSGTSGKTSVACIITHILRKQQKKTFRIGTHEVDDNQHIQAIPNTTPDSFTLANLLKEA 175

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       + E+  S     +     +     V T I   HL            K ++  
Sbjct: 176 IQQGFTHIVMEV--SSHAIDQNRICFMSYDAIVYTNITQDHLDYHFTRTHYMYTKFKLRR 233

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L+K G I +N D  +   L+  S A  I   +        D  L         S     
Sbjct: 234 YLKKDGFIIINKDFPYLMKLQHLSDAKLITIGFDAAHFTIEDMHL---------SEQGAI 284

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                   V   +G     N    + +  +L    +  I +        GR +  +    
Sbjct: 285 FTINGYSFVIPLLGKMNVYNTTEAIALCHMLNITYEQLIASCQDLPYVSGRMELMKGKK- 343

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T++ +  +   A       ++       +G+   V+G     G         L   
Sbjct: 344 ---HTVLLDYAHTPDA----VEKLMEFARSICQGKLYIVVG----CGGERDRSKRKLMAD 392

Query: 396 LSLYNISHVWLSGFHVLA--LKDALPRSIHVHY-----SETMDGLFLFIQSSLVDGDVVV 448
            +         +  +     L   L       Y      E       +      + D++V
Sbjct: 393 AACKYSDMAIFTSDNPRHESLSTILLDMCKTTYQNYEVVENRYFAIKYTIKIAKESDIIV 452

Query: 449 V--KS 451
           +  K 
Sbjct: 453 IAGKG 457


>gi|290579966|ref|YP_003484358.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
 gi|254996865|dbj|BAH87466.1| putative UDP-N-acetylmuramoylananine-D- glutamate-2,6-
           diaminopimelate ligase [Streptococcus mutans NN2025]
          Length = 483

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 66/464 (14%), Positives = 134/464 (28%), Gaps = 39/464 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++           P+   + IS DSR I     FF +KG  +   +F+  A++ G 
Sbjct: 16  NFREIIDGEHYQYKYSNPEVAFHHISYDSRDIKASTLFF-VKGATFK-KEFLEKAIESGL 73

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       + IP+  V+++  A+  +A       + K   +A TG+ GKTT  
Sbjct: 74  TFYVAEKDY-----QVGIPLILVNNIKNAMCLIAKEFYDNPQDKLKTLAFTGTKGKTTAA 128

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L    +            G     +++       +F++             +  
Sbjct: 129 YFAYHILKQGYRPAMISTMNTTLDGKTFFKSKLTTPESLDLFKMMAQAAANGMTHLIMEV 188

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-- 241
              A +          +    ++        + +                LL   S    
Sbjct: 189 SSQAYLVG------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLKHSRYVI 242

Query: 242 -LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNML 297
                  ++  K + AD     + + S+   +  +     +     G        + N  
Sbjct: 243 VNSQMNHFALVKEQVADQPHDFYGKYSDNQIVNSKAFSFDLTGKLAGHYDIQLTGSFNQE 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +           +              G+        G    +D ++N +        
Sbjct: 303 NAVAAALACLQLGASQTDIQKGIVQTTVPGRMEVLVQKNGAKVFVDYAHNRDSLE----- 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            +LS +  H +G  I +LG     GE  ++   D   V++ +    V L+          
Sbjct: 358 KLLSVVEEHQKGTLILILGAPGNKGESRRA---DFGYVINAHPELQVILTADDPNNEDPQ 414

Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
            +   +   I   V+             S    + D V++  K 
Sbjct: 415 LISQEIAHHIKRPVNIIVDRKQAIQKAMSLTQSENDAVIIAGKG 458


>gi|317130029|ref|YP_004096311.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
 gi|315474977|gb|ADU31580.1| Mur ligase middle domain protein [Bacillus cellulosilyticus DSM
           2522]
          Length = 526

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 126/349 (36%), Gaps = 16/349 (4%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              +I ITGS GKT+ K  +   LS+         S+N  +GV  T+   +    +  I 
Sbjct: 178 HLKVIGITGSFGKTSVKHFMHAVLSAKFNVLMTPESFNTKLGVTRTIREKLKPYHEVFIA 237

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G    G++  +  LV     V+T I   HL  F  ++ I   K EI E L   G   L
Sbjct: 238 EMGAKQGGDVEEICELVDQQYGVLTAIGEQHLETFKSLDNIKKTKYEIIETLPDNGVGVL 297

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD              I               +    +  + + +    + ++     
Sbjct: 298 NKDDENIMSYAPYQKRDVIYYGIDAPDVDIRAKDISYSSKGMDFTVVLKNGETQTFRTKL 357

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G          + +G+   +          +      +    R     + G  T+ID+S
Sbjct: 358 LGKHNVYNILAAIAIGLQLGMKLSEM-----VKPIRSLDAVPHRLELKRSTGNITIIDDS 412

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N+NP   K A+ VL  +    EG R+ V   M E+GE     + + A   +     ++ 
Sbjct: 413 FNSNPVGSKMAVDVLGSM----EGYRMLVTPGMIELGEKEYELNKEWATYAAN-KCDYII 467

Query: 406 LSG-FHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G      L+D L  +      ++ +E +      +     +  +V++
Sbjct: 468 LVGKKQTKPLQDGLKEANYPEAQLYIAENLQDAIQQMHKVAKEKTIVLL 516


>gi|144897242|emb|CAM74106.1| hypothetical protein MGR_2077 [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 112

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 5/106 (4%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           H+L   I G          +  I+ DSR + P   FFA+ G   DG  FI  AV +GA +
Sbjct: 2   HNLADLIPG---NHTANPLITAITCDSRKVGPGTLFFALSGSKADGRAFIPQAVAQGAVV 58

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +V  T   A  G+    +  VD+   A    A     R    + AI
Sbjct: 59  IVAETGTQAETGT--ALLVTVDNPRRAYALAAAPLHGRQPEVMAAI 102


>gi|300780827|ref|ZP_07090681.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
 gi|300532534|gb|EFK53595.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium genitalium ATCC 33030]
          Length = 498

 Score = 93.8 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 143/481 (29%), Gaps = 56/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  +L +               V+ IS+DS ++     F A+ G    G  F   A    
Sbjct: 5   SLENLAEIAGARVENAPESSLSVSAISLDSNAVKSGAMFAALPGTRVHGATF---AHASD 61

Query: 65  AGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           A  V+ +      +       PV  V+ V   L  +A           T+I +TG+ GKT
Sbjct: 62  ASAVLTDDAGWDILRETGFERPVLVVERVRDILGDVAAEIYGHPTEHLTVIGVTGTSGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFGIFE-- 166
           TT  +L   L++       IG+                   P         V  G+    
Sbjct: 122 TTTYLLESGLTAAGCAVGLIGTTGTRIKGEDVPTSLTTPEAPKLQELFADMVSRGVTHVV 181

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S    +       +   A  T ++  HL     +E+   AKA +F+  E      + 
Sbjct: 182 MEVSSHALVLGRVDGTKFAAAGFTNLSQDHLDFHPTMEDYFEAKAILFDRAE---KAVVC 238

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD + + +  ++H+     +++      A           + +         +   +  
Sbjct: 239 IDDEWGQKMTQRAHSPVTVGVHNTSADCTARLDSVTESGAQDITVRIGGQDISTRIPLPG 298

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                           V I        + A          G+  R ++ Q F  ++D ++
Sbjct: 299 AFNIANTALATALADSVGIDPKVFLQGLDAAR------VPGRMERVSVGQPFVAVVDYAH 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                      + L  +    +GR   V+G     G         L    +      V +
Sbjct: 353 KPAA-----VAAALDSLREQVDGRIGVVVGA----GGDRDHSKRPLMGAEAATRADLVII 403

Query: 407 SG-----FHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +          A++ A+ +            +    +       + +    GD ++V  K
Sbjct: 404 TDDNPRTEDPAAIRAAVKQGAESVIDGAATDIREVASRAQAIADLVAWAEPGDAIIVVGK 463

Query: 451 S 451
            
Sbjct: 464 G 464


>gi|296160548|ref|ZP_06843364.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
 gi|295889297|gb|EFG69099.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. Ch1-1]
          Length = 518

 Score = 93.4 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 145/486 (29%), Gaps = 58/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQK 63
             D L  +  H            +  D+RS+A  + FFA      DG D   FI  A+++
Sbjct: 14  IADALTWLHAHVQPGA------HLHADTRSLAAGDVFFAYA---VDGADNHPFIEGAIER 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
           GA  V+V  +  +     S     V  +      +A             + ITG+ GKT+
Sbjct: 65  GAAAVLVQPEGFSGAIDPSNT-LAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTS 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IF 165
             + ++ AL+++    A IG+     G+P  L                            
Sbjct: 124 CSQWISAALTALGTRCAIIGTLGT--GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     IAV T +   HL      E   +AKA +F   E    +  
Sbjct: 182 AMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAVIN 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D +   LL +              +        R        +               
Sbjct: 242 RDDAAGRRLLASTQGHARTIAYGLDSEQGALQDAPRADALLLASNVRATATGTAFHLSTS 301

Query: 286 HGIGYHMAQNMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    L    + ++L             + A+  L+   P  GR +R    L  
Sbjct: 302 EWGDAEVEVQTLGAFNVSNLLGVLGALLAADVPFEAALAELAKLEPVNGRMQRLGGRLQN 361

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               ++ + Y   P +++  +  L  ++    G  I + G     G    +    L   +
Sbjct: 362 DEPLVVID-YAHTPDALEKTLEALRPMAAARGGELICMFG----CGGDRDATKRPLMGAI 416

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V L+  +  +         +   +  +      E      L    S    DV+
Sbjct: 417 AEKIADGVVLTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVI 476

Query: 448 VV--KS 451
           V+  K 
Sbjct: 477 VLAGKG 482


>gi|227891687|ref|ZP_04009492.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
 gi|227866490|gb|EEJ73911.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius ATCC 11741]
          Length = 510

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 136/479 (28%), Gaps = 63/479 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +     ++ DSR ++    FF  KG ++    ++  A++KGA   V        +
Sbjct: 21  VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +       V +V  A+  L  A     +++  IIA TG+ GKTT+       L+     
Sbjct: 78  DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134

Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                              + + +  P         R  V+       + +S     +  
Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194

Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            + +   + V   I+P H+        ++    K ++    +                  
Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKCCVINGETAYLRDVYYTA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284
             +       +++   ++ +D      +  ++                + Q      +  
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N    +    +  A  +    A          G+             +D 
Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N        A       +    GR IAVLG   + G                  + HV
Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423

Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+    G    + +   +       ++ V +    +           + D+VV+  K 
Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482


>gi|293509786|ref|ZP_06668495.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
 gi|291467236|gb|EFF09753.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Staphylococcus aureus subsp. aureus M809]
          Length = 300

 Score = 93.4 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 19/303 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L + ++   +    +  ++ I+ DSR+      F A  G   D H F      +G
Sbjct: 1   MDASTLFKKVKVKRVLGSLEQQIDDITTDSRTAREGSIFVASVGYTVDSHKFCQSVADQG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTT 122
             LVVVN +      S ++    V D L   + LA          ++   +TG+ GKT+ 
Sbjct: 61  CKLVVVNKE---QSLSANVTQVVVPDTLRVASILAHTLFDYPSHQLVTFGVTGTNGKTSI 117

Query: 123 KEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDVDFGIFE------LG 168
             M+ +    ++K         +    +             +   +   +        L 
Sbjct: 118 ATMIHLIQRKLQKNSAYLGTNGFQINETKTKGANTTPETVSLTKKIKEAVDAGAESMTLE 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S  G +      V   +A+ + +   HL     +E    AK+ +F  L +  +      
Sbjct: 178 VSSHGLVLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVV 237

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +        +    ++S+G  + A F     ++  +    +      + +V    +
Sbjct: 238 LNNDDSFSEYLRTVTPYEVFSYGIDEEAQFMAENIQESLQGVSFDFVTPFGTYQVKSPYV 297

Query: 289 GYH 291
           G  
Sbjct: 298 GKF 300


>gi|184156310|ref|YP_001844650.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus fermentum IFO 3956]
 gi|183227654|dbj|BAG28170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- lysine ligase
           [Lactobacillus fermentum IFO 3956]
          Length = 518

 Score = 93.4 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V                
Sbjct: 36  FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 88

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132
             V ++  A+  L+ A      +    I ITG+ GKT+T                  +S+
Sbjct: 89  LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  +      + + +  P            +   +   + E+  S    +    + +   
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V   I+  H+      +       +    L  +  +     D F E+ +A   +    
Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            IY FG+   + D  L    Q +  +    QL G S       +      ++     + +
Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326

Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              A +  AI  +          +     R      Q   T+  +  +   +  +    +
Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
             Q       +   VLG     G   +    DL + L+   ++ V L+          A+
Sbjct: 387 KDQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443

Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   I       V Y             +   GD+VV+  K 
Sbjct: 444 AAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|303290893|ref|XP_003064733.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226453759|gb|EEH51067.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 624

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 12/237 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD-FILHAVQK 63
           +T  D+  A  G  +          ++ D+R +A  + F A+ G   D H+ F+   +Q 
Sbjct: 81  FTASDIASATGGTLVR---DAAAGSVTTDTRDVAGGKWFLALVGETRDAHEEFVNDELQN 137

Query: 64  G-AGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITG--SVGK 119
                V+ +     S             D   AL +LA   R R    ++ +    SVGK
Sbjct: 138 TECVGVISSRPPPGSWRKG---YVQTACDPTTALQRLASDVRDRFPPDVVVVGVTGSVGK 194

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT+ +   AL+S+   +   G++NNH+G+PLTL + P DV   + ELGMS LGEI  L 
Sbjct: 195 TTTRALTARALASLGVVHQTSGNFNNHVGLPLTLLKTPPDVRACVLELGMSALGEISTLA 254

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            + RP + ++T +APAHLS     I  +A AKAE+F+G        +N DD     +
Sbjct: 255 KIARPTVRLVTRVAPAHLSGVGGDIRGVARAKAEMFDGASAGDVCVVNADDEHVAGM 311



 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---YSE 428
             +LGDM E+GE S+  H D+ E         + L+G   +          +V     ++
Sbjct: 521 FVLLGDMLELGEASKQHHEDVIEACLDAGFDKIGLAGPEFVEALRVFFPKRNVQSVVIAK 580

Query: 429 TMDGLFLFIQ--SSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            ++ L+  I+    +     V+VK S       +++ L     A
Sbjct: 581 DVEDLWDIIEGTQIIGPNARVLVKGSRGMKMDYIVDRLRSREGA 624


>gi|227514106|ref|ZP_03944155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
 gi|227087477|gb|EEI22789.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum ATCC 14931]
          Length = 518

 Score = 93.0 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V                
Sbjct: 36  FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 88

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132
             V ++  A+  L+ A      +    I ITG+ GKT+T                  +S+
Sbjct: 89  LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  +      + + +  P            +   +   + E+  S    +    + +   
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V   I+  H+      +       +    L  +  +     D F E+ +A   +    
Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            IY FG+   + D  L    Q +  +    QL G S       +      ++     + +
Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326

Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              A +  AI  +          +     R      Q   T+  +  +   +  +    +
Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
             Q       +   VLG     G   +    DL + L+   ++ V L+          A+
Sbjct: 387 KGQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443

Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   I       V Y             +   GD+VV+  K 
Sbjct: 444 AAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|295704237|ref|YP_003597312.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
 gi|294801896|gb|ADF38962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus megaterium DSM 319]
          Length = 287

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 5/120 (4%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV---V 70
           +    I       +N ++  S+ +     FF+IKG + DGH +I  A+ +GA  V    +
Sbjct: 11  LSIKHIFGPASQTINYLTYHSKQVHDGSVFFSIKGENEDGHQYIKEAIARGAVAVFGTSI 70

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTI 128
               + S          VDDV   +   +      +   I  I +TG+ GKTT    +  
Sbjct: 71  EKLRLLSTQYSHCTFLAVDDVRKVMASFSKMYFDYTDEKIETIGVTGTNGKTTVAAYVRS 130


>gi|146329007|ref|YP_001209875.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
 gi|146232477|gb|ABQ13455.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelat e
           ligase [Dichelobacter nodosus VCS1703A]
          Length = 482

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 145/474 (30%), Gaps = 46/474 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T H+LL A+ G S   V    ++ +S+DSR +  Q  + A +G  Y   DF    +  
Sbjct: 1   MKTTHELLTAL-GLSTAAVDDKPISALSLDSRVLNEQMLWLATRGTQYHALDFYTPEIN- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
               +                   V+ +   ++ +A         K  I  +TG+ GK++
Sbjct: 59  -CAAIFYEPPYQNPPPHA----ITVERLSEKVSAIADLFYDHPAQKLWITGVTGTDGKSS 113

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------LGMSHL 172
               +  A  +        G+ N       T                       + +S  
Sbjct: 114 LVHFIAQATGAAMLGTIGYGNLNALQPASHTTPDAITTQQQLAHFVAQGNQAVAMEISSH 173

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
              +     V   +AV T ++  HL   + +E+   AKA++F          +N DD   
Sbjct: 174 ALAQHRVAAVAVDVAVFTNLSRDHLDYHADMEDYFLAKAQLFA--FPIKHAVINIDDPHG 231

Query: 233 ELLKAKSHALGIKTIYSFGKSK------NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             L ++        I++           + +     +          + +  +++ V  H
Sbjct: 232 RRLISEHRINSSACIWAVSAKGAHNAAAHHNVCAHDYCLHQNGVTFTLAIDDETIAVETH 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+L     ++     +    + L+  H   GR +    +           + 
Sbjct: 292 LLARFNLDNVLNVAACLAAQGFSLAAIAEKLNQLHGVIGRVEPISLSNQALAIVDYAHTA 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            A         SVL+ I PH  G+   + G     G         L    +      V +
Sbjct: 352 GA-------IESVLTGIRPHISGKLWLIFG----CGGNRDRGKRALMAQAAERFADAVIV 400

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +  +            +         +H  +  +    +  + L  GD V++  
Sbjct: 401 TDDNPRTEDPAAIIADVMQGFEYPEKIHVIQPREQAIHYALAQLHAGDAVLITG 454


>gi|312864606|ref|ZP_07724837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
 gi|311099733|gb|EFQ57946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus downei F0415]
          Length = 483

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 75/474 (15%), Positives = 143/474 (30%), Gaps = 61/474 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+    QG           + +S DSR + P   FFA KG  +   +F+  AV+KG 
Sbjct: 16  NFRDIAY--QGDYAYNWSGVTFDHLSYDSRHVTPSSLFFA-KGAVFK-KEFLQGAVEKGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              +   D       + IP   V+D+  A++ +A+A     + K  I+A TG+ GKTT  
Sbjct: 72  AFYIAEKDY-----EVGIPAILVNDIKQAMSLIAMAFYDNPQDKLKILAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-------------- 169
                     +K            G     +++       +FE+                
Sbjct: 127 YFAYNIFKQSQKPAMLSTMNTTLDGETFFKSQLTTPESLDLFEMMAQAVENGRSHLIMEV 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNY 227
           S    +    + +   + V   I+P H+        E+    K  + E       + +N 
Sbjct: 187 SSQAFLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSR---AVVVNS 243

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
               F +L+ +  ++          ++  + +   +    + +                 
Sbjct: 244 GMDHFAILRDQVASIPHDFYGELSDNQIKNSRAFDFDLTGKLAGHYDIQLIGDFNQE--- 300

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                       L           +              G+        G    +D ++N
Sbjct: 301 ----------NALAAGLACLRLGASPADIQRGIAETTVPGRMEVLTQTNGAKVFVDYAHN 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +LS ++ H  G+ I +LG     GE  ++   D   V++ +    V LS
Sbjct: 351 GDS-----LKKLLSVVAQHQSGKNILILGAPGNKGESRRA---DFGAVINHHPDLEVILS 402

Query: 408 G-----FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
                      +   +   I   V      +              D V++  K 
Sbjct: 403 ADDPNKEDPQVICQEIASHIKRPVEIIVDREKAIKTALQLTQTAQDAVIIAGKG 456


>gi|194290818|ref|YP_002006725.1| udp-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224653|emb|CAQ70664.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 522

 Score = 93.0 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 95/494 (19%), Positives = 154/494 (31%), Gaps = 50/494 (10%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGHDFI 57
            PL       QA    +           +S D+R ++  + FFA   G      DG  +I
Sbjct: 4   KPLLPLEVTAQASNALAWLRTNVAAAAQLSGDTRRLSRGDVFFAYVLGNDRLATDGRPYI 63

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             A+  GAG VV   D        ++P   V  +      +A            +  ITG
Sbjct: 64  AQAIAAGAGAVVYEADGFDWPFGDAVPHLAVSRLHQLAGPIAAGWHGNPARGLAVTGITG 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------- 165
           + GKT+  + L   L +     A IG+     G P  L          +           
Sbjct: 124 TNGKTSCSQWLARVLQATGTPCATIGTLGT--GFPDALQATGFTTPDAVQLQASLATLHD 181

Query: 166 ------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S  G  +         +AV+T +   HL     + E  +AKA +F     
Sbjct: 182 AGARAVAMEVSSHGLEQERVAGTHFSVAVLTNLTQDHLDYHGSMAEYEAAKARLFRWDGL 241

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK----------SKNADFQLRKWKQCSEQ 269
              +    D     LL A + A+    +  +G            + A  +    +  +  
Sbjct: 242 RTAVINRDDAMGQRLLAADAAAVVAPHVIEYGIDGPAAATVRGPRGAWLRATSVRATATG 301

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +   +       E+    IG     N+L  LG         D AI AL    P EGR + 
Sbjct: 302 TAFHIDGSFGHAEMATPMIGAFNVSNLLAVLGAALANGVAWDAAIAALRALAPVEGRMEL 361

Query: 330 YRCALNQGFFT-LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           +  A +      L    Y   P +++  ++ L  ++    GR   V G     G      
Sbjct: 362 FGAAGHDAAQAPLAVVDYAHTPDALEQTLAALRPVAQARNGRLWCVFG----CGGDRDPI 417

Query: 389 HIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQS 439
              L   ++      V L+  +           A+ D +         E      L+   
Sbjct: 418 KRPLMGAVAERLADEVVLTSDNPRSEDPQDILDAIADGMTERARGRQIEDRAAAILYAVR 477

Query: 440 SLVDGDVVVV--KS 451
                DVV+V  K 
Sbjct: 478 HAAPADVVLVAGKG 491


>gi|116332750|ref|YP_794277.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis ATCC 367]
 gi|116098097|gb|ABJ63246.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus brevis ATCC
           367]
          Length = 504

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 142/467 (30%), Gaps = 56/467 (11%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                 G++ DSR +     F   KG ++   D++  A++ GA   +   D       +S
Sbjct: 24  DDTDFVGLTYDSRQVQANTLFVC-KGFNF-SVDYLHSAIENGATAYLAEEDY-----GVS 76

Query: 83  IPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +PV  V +V  AL+  A       ++   +I  TG+ GKTT+  + T  LS        +
Sbjct: 77  VPVILVKNVRKALSLAAQLYFDFPQNDLFVIGYTGTKGKTTSTYLTTNILSHAFPQQVAM 136

Query: 141 GSYNNHIGVPLTL------------------ARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            S  NHI  P                      R  VD    +  + ++    +    + +
Sbjct: 137 FSTINHIVGPKPQDQYRAHLTTAESFDLFKEMRQAVDNGQKVLVMEVASQAYLLDRVYGL 196

Query: 183 RPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              + +   I+P H+              K ++                         S 
Sbjct: 197 TFDVGIFLNISPDHIGVNEHPNFANYLFCKMQLLLNSRNCIINAETDHFDEIYAAAKVST 256

Query: 241 ALGIKTIYSFGKSK----NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                  Y F +++        Q        + +  + +L   +        G     N 
Sbjct: 257 DPEHIFTYGFNQAQASLSITSRQATLTDSHFDLTVHDERLAALATTYDVSVPGDFNQSNS 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +    +  A V      L+                 +   T+  + Y  +  SM A 
Sbjct: 317 AAAILASHLAGAQVADMQYGLAHTRIPGR----MESITTKHHGTVYID-YAHDWGSMNAL 371

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G-FHV 411
           +S L    P  + R IAVLG   + GE       +             +L+    G    
Sbjct: 372 LSFLHTQFP--DHRVIAVLGSTGDKGEDR----REGFAKALNDYADAAYLTTDDPGHEDP 425

Query: 412 LALKDALPRSIHVHYSET-----MDGLFLFIQSSLVDGDVVVV--KS 451
           +A+   +   I     +T      +       ++  + D+VV+  K 
Sbjct: 426 MAIAREIDSHIDHTKVKTTIIAQRETAIAQAITTATNTDLVVLAGKG 472


>gi|307544546|ref|YP_003897025.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
 gi|307216570|emb|CBV41840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halomonas elongata DSM 2581]
          Length = 503

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 140/447 (31%), Gaps = 41/447 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR +A  + F A+ G   DG DFI  A++ G   V+          S    V  ++ + 
Sbjct: 37  DSRELAEGDVFLAVPGVSVDGRDFIDQALEAGVAAVLA-HAEPGGSASADARVIHLEGLA 95

Query: 93  GALNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           G L +L  +         +I +TG+ GK++    +      + +    +G+  +     L
Sbjct: 96  GQLGELGRSLFEVPASLELIGVTGTNGKSSVTHYIAALSRLLGRDAGMVGTLGHGRPGAL 155

Query: 152 TLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
              R+       +                L  S     +      R   AV T ++  HL
Sbjct: 156 REGRLTTPGPLALQSALGELAAEGVERVALEASSHALEQERLAGCRLTTAVFTNLSRDHL 215

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                +    +A         +     +N DD    L+ A         + + G  +   
Sbjct: 216 DYHGSM-AAYAAAKARLFRRPELRLAVVNGDDPLARLMLA--GLPAGVRVLAVGDDEAVT 272

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
            ++   +   +     +        +    +G     N+L+ +  +  L  D++    A 
Sbjct: 273 LRVVGVEPLPQGQRAVIATPEGERVLEIALMGGFNLTNVLLAIATLHGLGEDLEALFAAA 332

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           +   P  GR    +   +    T++ + Y   P +++ A+  L    P  +GR   + G 
Sbjct: 333 AELAPVPGR---MQVLGDARGPTVVID-YAHTPDALENALQALRAHLPD-QGRLWCLFG- 386

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISH-VWLSGFHVLALKDALPRSIHVHYSET------- 429
               G    +    L    +       V            A+   I    SE+       
Sbjct: 387 ---CGGDRDAGKRPLMAAAAERYSDVPVITDDNPRSEAAAAIREQILAGLSESARRSARV 443

Query: 430 ---MDGLFLFIQSSLVDGDVVVV--KS 451
                       + +   DV+++  K 
Sbjct: 444 LGGRAAAIRETIAEVDAEDVILIAGKG 470


>gi|114330910|ref|YP_747132.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307924|gb|ABI59167.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 630

 Score = 93.0 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 107/381 (28%), Positives = 153/381 (40%), Gaps = 21/381 (5%)

Query: 99  AVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           A   RL   +   I ITGS GKTTTKE+  + LS          S N  I V  T+    
Sbjct: 29  AKLHRLSLTQTQFIGITGSAGKTTTKELCNLILSGSYSVMTTPQSLNTPIIVAETMLATE 88

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIFE 215
               F I ELG    G +     L RP I V+T I   H   F G  ++ IA  KA++ E
Sbjct: 89  KKHKFCIMELGAFKPGALDLPLRLFRPKIGVLTNIEKDHYRAFKGQGVDGIAVEKAKLIE 148

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEV 274
            L K GT  LN DD   + +  +  A  I      GK+  +  +L K   +  E   + V
Sbjct: 149 ALSKNGTAILNMDDPRVKAIGERCKARVIW----VGKNPESTIRLCKVTSRWPEPLKLTV 204

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             QGK  EV  H  G  +A ++L  LG+       ++ AI  L    P  GR    +   
Sbjct: 205 TYQGKLYEVPTHLYGTQLALSILSALGVAIAAGLSIEEAINKLVEAVPTAGRM---QIVT 261

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +   T I +   A      + ++    +      R+IAV+G + +    S   +   A 
Sbjct: 262 GEDDVTFIRDDMKA---PYWSLLAPFKFLKEADALRKIAVVGSISDFSGDSTMIYKRCAR 318

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSS 452
            L  Y    V   G +      A             T+     F+Q +L  GD+V++K S
Sbjct: 319 ELREYA-DMVIFVGDNAHRALRARKDENDSTLQGFLTLKEASSFLQKTLRPGDLVLLKGS 377

Query: 453 N-SCGFYRLINLLLEEFPAIQ 472
           N S    RL   +L+ +  IQ
Sbjct: 378 NKSDHLQRL---ILDRYKPIQ 395


>gi|301299515|ref|ZP_07205788.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852905|gb|EFK80516.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 510

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/479 (12%), Positives = 136/479 (28%), Gaps = 63/479 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +     ++ DSR ++    FF  KG ++    ++  A++KGA   V        +
Sbjct: 21  VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +       V +V  A+  L        +++  IIA TG+ GKTT+       L+     
Sbjct: 78  DATG---IIVTNVQKAMALLGAVFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134

Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                              + + +  P         R  V+       + +S     +  
Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194

Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            + +   + V   I+P H+        ++    K ++    ++                 
Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284
             +       +++   ++ +D      +  ++                + Q      +  
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N    +    +  A  +    A          G+             +D 
Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N        A       +    GR IAVLG   + G                  + HV
Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423

Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+    G    + +   +       ++ V +    +           + D+VV+  K 
Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482


>gi|296269381|ref|YP_003652013.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
 gi|296092168|gb|ADG88120.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermobispora bispora
           DSM 43833]
          Length = 524

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 80/456 (17%), Positives = 141/456 (30%), Gaps = 39/456 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            + GISIDSR +   + + A+ G    G DF   A   GA  ++ +        +  +PV
Sbjct: 35  VITGISIDSRRVQRGDLYVALPGSTAHGADFAAEASAAGAVAILTDAAGRERAVATGLPV 94

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D    L ++A           TII +TG+ GK+TT  +    L +       IG  
Sbjct: 95  LVVPDPRAVLGRVAAWVYGNPTADLTIIGVTGTSGKSTTTFLTEAGLRAAGHRTGLIGGV 154

Query: 144 NNHIGVPLTLARM--PVDVDFGIFELGMSHLGEIRFLTHLVRP------------HIAVI 189
              +G     AR+  P   +       M   G       +                +A+ 
Sbjct: 155 EIRVGDLRFPARLTTPEASELQALFALMREQGVTAAAMEVSSHALALGRVAEIIYDVAIF 214

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  HL     +++  +AKA +F   + +    +N DD +   L  +  A    T +S
Sbjct: 215 TNLSQDHLDFHRDLDDYFAAKARLFT-PDHSRLGVVNIDDRYGRELAER--AKIPITTFS 271

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ-----------GKSMEVVHHGIGYHMAQNMLM 298
                +AD+++   +  ++ S   V                +  V +            +
Sbjct: 272 PSGDADADWRVADVRLGADGSVFRVVGPGGVETDVSVALPGAFNVANALAALVALVEAGV 331

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +                +               A        +  S  A   S +  + 
Sbjct: 332 PVPAAVAGIGMTTCVPGRMERVPGPGDIQVFVDYAHKPAAVESVLRSLRAVMGSGRRLVI 391

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDA 417
           V+        G+R      M E           +    +  +   +  L+     AL+  
Sbjct: 392 VVGCGGDRDRGKRPL----MGEAAARLADA--AIFTNDNPRSEDPLAILAAMLSGALRVP 445

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                HV              S+   GDVV+V  K 
Sbjct: 446 AAERAHVIVEPDRAAAIDLAISTARSGDVVLVAGKG 481


>gi|300213951|gb|ADJ78367.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus salivarius CECT 5713]
          Length = 510

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 137/479 (28%), Gaps = 63/479 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +     ++ DSR ++    FF  KG ++    ++  A++KGA   V        +
Sbjct: 21  VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +       V +V  A+  L  A     +++  IIA TG+ GKTT+       L+     
Sbjct: 78  DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134

Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                              + + +  P         R  V+       + +S     +  
Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194

Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            + +   + V   I+P H+        ++    K ++    ++                 
Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284
             +       +++   ++ +D      +  ++                + Q      +  
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N    +    +  A  +    A          G+             +D 
Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N        A       +    GR IAVLG   + G                  + HV
Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423

Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+    G    + +   +       ++ V +    +           + D+VV+  K 
Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREMAIEKAIKMSTNNDIVVLAGKG 482


>gi|166368093|ref|YP_001660366.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
 gi|166090466|dbj|BAG05174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Microcystis aeruginosa NIES-843]
          Length = 497

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 151/480 (31%), Gaps = 46/480 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
               +LL  I   S    P   +  + GIS +S +  P + F  + G   DG +F   A+
Sbjct: 1   MKLQELLTTIPLVSPISSPIALETEITGISTNSHACQPGDLFIGLPGTRVDGGEFWRSAL 60

Query: 62  QKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
           + G    ++               V  V D++ A   +A            +I +TG+ G
Sbjct: 61  ETGAVAAIISPAAAAKFPPPEDASVMVVADLVTAAAAIAAKFYHYPAQTLKLIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIK---------KTYACIGSYNNHIGVPLTL-------ARMPVDVDF 162
           KTTT  ++   LS             T         +   P            +    + 
Sbjct: 121 KTTTTHLIEYFLSQAGIPTALFGTLYTRWQGFQETANHTTPFANELQASLAKAVSAGNEI 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  SH      +     P   V T +   HL     +E+  +AKA++F      G 
Sbjct: 181 AVMEV-SSHALAQGRVQGCTFPVT-VFTNLTRDHLDYHLDMEDYFAAKAKLFSPDYLQGK 238

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD++ + L A      + T         ADF  +            +      + 
Sbjct: 239 AIINLDDAYGQRLAASLSPQQVLTYSVC--DARADFYTKDLHYQPTGVQGVMVTPQGEIA 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G +   N+L  +  V     D+   I  +  F    GR +R   A +Q    ++
Sbjct: 297 FASPLVGQYNLANLLAAVAAVLECGVDLGKVIGQIPQFSGVPGRMERVSIAPDQDISVIV 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +        +VL    P   GR I V G     G         L   ++     
Sbjct: 357 DYAHTPDSLE-----NVLKASRPFISGRMICVFG----CGGDRDRTKRPLMGKIAAELAD 407

Query: 403 HVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              ++  +            +   +P  I V               +   GD V++  K 
Sbjct: 408 LAIVTSDNPRTESPERILQDIVAGIPSEITVQVISDRALAIDTAIQAAQPGDGVIIAGKG 467


>gi|90961006|ref|YP_534922.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus salivarius UCC118]
 gi|122449508|sp|Q1WVQ8|MURE_LACS1 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|90820200|gb|ABD98839.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus salivarius UCC118]
          Length = 510

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 137/479 (28%), Gaps = 63/479 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +    +     ++ DSR ++    FF  KG ++    ++  A++KGA   V        +
Sbjct: 21  VVNEQKLTFENVTYDSRKVSDNTLFFC-KG-NFKP-SYLTSALEKGATAYVSEQKYAEGM 77

Query: 79  GSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +       V +V  A+  L  A     +++  IIA TG+ GKTT+       L+     
Sbjct: 78  DATG---IIVTNVQKAMALLGAAFYGFPQNELFIIAYTGTKGKTTSAYFAEHILAKATDK 134

Query: 137 -------------YACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFL 178
                              + + +  P         R  V+       + +S     +  
Sbjct: 135 KVALFSTIDRVLGNEPDQRFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNR 194

Query: 179 THLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            + +   + V   I+P H+        ++    K ++    ++                 
Sbjct: 195 VYGLTFDVGVFLNISPDHIGRNEHPTFDDYLHCKEQLLVNSKRCVINGETAYLRDVYYTA 254

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSE------------QSWMEVQLQGKSMEVV 284
             +       +++   ++ +D      +  ++                + Q      +  
Sbjct: 255 KATTEPEDIYVFARKGAQISDNIPVDIEYQNDFEDLHKSVIEVKGLSDKAQTLHVDGKYE 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G +   N    +    +  A  +    A          G+             +D 
Sbjct: 315 LSVPGDYNEGNATSAIIATLLAGAKGED---ARKTLDRVHIPGRMEIIKTKNNGTIYVDY 371

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N        A       +    GR IAVLG   + G                  + HV
Sbjct: 372 AHNYASLKALFAFLKQQTHA----GRVIAVLGSPGDKGISR----RPGFGKAVSEEVDHV 423

Query: 405 WLS----G-FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+    G    + +   +       ++ V +    +           + D+VV+  K 
Sbjct: 424 ILTTDDPGFEDPMKIAQEIDSYINHDNVKVEFELDREIAIEKAIKMSTNNDIVVLAGKG 482


>gi|295093595|emb|CBK82686.1| UDP-N-acetylmuramyl-tripeptide synthetases [Coprococcus sp.
           ART55/1]
          Length = 507

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/460 (13%), Positives = 131/460 (28%), Gaps = 54/460 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + I+I+S+ + P   F   KG  +   D++  A+ +GA + +           + I
Sbjct: 29  DITPSHITINSKDVVPGTFFVC-KGASFK-EDYLKSAIAQGAIVYLSQQKY----DDVDI 82

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-I 140
           P   V+D+  A+   A           T + ITG+ GKTT   ++   L           
Sbjct: 83  PYIIVNDIRKAMALAARWFFGNPGDNMTKVGITGTKGKTTVTFVMKDILDKYTDNRCSAF 142

Query: 141 GSYNNHIGVPLTL--------ARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHI 186
            ++   +G  +            +    D  + E      + +S         +     +
Sbjct: 143 STHEIDVGTKVFETTLTTPEPIELQTYFDMAVDEGCTHCIMEVSSQAMKMNRIYGEHYKV 202

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V T I   H+S    + +E+    K    +  +                     H +  
Sbjct: 203 GVFTNIDYDHISPTEHASMEDYLGCKVSFLKQCDNVVLYSDTRYFETIYNEVRDKHVVVY 262

Query: 245 KTIYSFGKSKNADFQL----------RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +  S  K  + D                      S+ E+   G++     + IG +  +
Sbjct: 263 GSKESIEKLMSRDDDFFEKDTDFASIHNEDLTDHNSYFELIYGGENRAYNTNLIGDYNVE 322

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N++  +    ++    D    ++   +             +    T + + Y  N  SM 
Sbjct: 323 NIVAAIISSLLIGIPNDQIRSSIRDVYVPGRL-----QVYHWKDRTFMID-YAHNYISMY 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
               ++             V G     G        +    L+      V L+       
Sbjct: 377 RLYEMVK--KTMKPKSITVVFG----CGGERYKKRREDMGRLAEQYADKVVLTMEDPGFE 430

Query: 412 --LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +   + +  +   +     +            G++V
Sbjct: 431 SCEEICKEIKQYITKPCYIIVDREQALTRALDEAQPGELV 470


>gi|228476612|ref|ZP_04061294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
 gi|228251807|gb|EEK10872.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus salivarius SK126]
          Length = 481

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 75/458 (16%), Positives = 137/458 (29%), Gaps = 63/458 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           +   + +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + I
Sbjct: 32  EVTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVKAGLSFYVAEKDY-----QVGI 84

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D+  A++ +A A     + K  ++A TG+ GKTT        L    K      
Sbjct: 85  PAIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQNHKPAMLST 144

Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 G     + +                   +   I E+  S    +    + +   
Sbjct: 145 MNTTLDGKNFFKSILTTPESLDLFRMMAEAVANGMTHLIMEV--SSQAYLTKRVYGLTFD 202

Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           + V   I+P H+        E+    K  + E               F     A      
Sbjct: 203 VGVFLNISPDHIGPIEHPTFEDYFYHKRLLLENSRVVIVNSGMDHFDFIAEEVA------ 256

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                   K  +   +           +        + +     IG     N +      
Sbjct: 257 -------DKEHDFYGKNSDNAVKHGSGFSFKASGKLAGDYDIQLIGDFNQDNAMAAGLAC 309

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L A++    + ++            +        T +D ++N +         +L  +
Sbjct: 310 LRLGANLQDIKEGIAQTSVPGRMEVLTQTNG---AKTFVDYAHNGDS-----LDKLLQVV 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVWLSG----FHVLALKDAL 418
           + H +G    +LG     GE  +    D   VL+ Y ++  +  +        LA+   +
Sbjct: 362 TSHQDGHISLILGAPGNKGESRRK---DFGHVLNTYPDVDIILTADDPNKEDPLAICQEI 418

Query: 419 PRSI--HVHYSETMDGLFLFIQSS-LVDGDVVVV--KS 451
              I   V      +       S  +   D VV+  K 
Sbjct: 419 ASHISREVRIIVDREKAIKTAMSETIDSKDAVVIAGKG 456


>gi|299783726|gb|ADJ41724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus fermentum CECT 5716]
          Length = 518

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/465 (15%), Positives = 142/465 (30%), Gaps = 51/465 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V                
Sbjct: 36  FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSYQNE-----ATA 88

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132
             V ++  A+  L+ A      +    I ITG+ GKT+T                  +S+
Sbjct: 89  LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 148

Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  +      + + +  P            +   +   + E+  S    +    + +   
Sbjct: 149 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 206

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V   I+  H+      +       +    L  +  +     D F E+ +A   +    
Sbjct: 207 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 266

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            IY FG+   + D  L    Q +  +    QL G S       +      ++     + +
Sbjct: 267 KIYLFGEAGSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 326

Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              A +  AI  +          +     R      Q   T+  +  +   +  +    +
Sbjct: 327 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 386

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
             Q       +   VLG     G   +    DL + L+   ++ V L+          A+
Sbjct: 387 KGQQYQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 443

Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   I       V Y             +   GD+VV+  K 
Sbjct: 444 AAEIDAHIDHDRVGRVEYVADRREAIETAIQAARAGDLVVLAGKG 488


>gi|260662527|ref|ZP_05863422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
 gi|260553218|gb|EEX26161.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Lactobacillus fermentum
           28-3-CHN]
          Length = 516

 Score = 92.6 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 73/465 (15%), Positives = 143/465 (30%), Gaps = 51/465 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           F   +  +S+ +  +  FF  KG  +   D++  A+ +GA   V                
Sbjct: 34  FFYHVEYNSKLVQSETLFFC-KGAAFK-EDYLNEAIDRGATAYVAEQSY-----QNGATA 86

Query: 86  FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLT-----------IALSS 132
             V ++  A+  L+ A      +    I ITG+ GKT+T                  +S+
Sbjct: 87  LIVTNIQRAMALLSNAFYGFPSNDLFAIGITGTKGKTSTAYFAATALNLGTDDRTALIST 146

Query: 133 IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +  +      + + +  P            +   +   + E+  S    +    + +   
Sbjct: 147 LNTSLGKGDVFKSKLTTPESLDLFRYLRQAVDNGMTHLVMEV--SSQSYLLDRVYSLHFG 204

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V   I+  H+      +       +    L  +  +     D F E+ +A   +    
Sbjct: 205 IGVFLNISSDHVGQNEHPDFANYLFCKEQLLLNSSVCVLNTQMDHFEEVYQAAKVSTAPD 264

Query: 246 TIYSFGK-SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            IY FG+ S + D  L    Q +  +    QL G S       +      ++     + +
Sbjct: 265 KIYLFGEASSHPDLDLAYQIQSTGLAGSNFQLTGVSDRGSALMLDGEYQSSVAGDYNVGN 324

Query: 305 ILTADVDTAIKALSVFH-----PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              A +  AI  +          +     R      Q   T+  +  +   +  +    +
Sbjct: 325 ATAAAICAAIGGVKKKTIQEAFGQVHIAGRMEVIRTQEHGTVYVDYAHDYASVKRLLAFL 384

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
             Q       +   VLG     G   +    DL + L+   ++ V L+          A+
Sbjct: 385 KGQQHQGEPSQITVVLGAPGNKGVSRRP---DLGKALAEERVNRVILTTDDPAFEDPQAI 441

Query: 415 KDALPRSI------HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +   I       V Y             +   GD+VV+  K 
Sbjct: 442 AAEIDAHIDHDRVGQVEYVADRREAIETAIQAARAGDLVVLAGKG 486


>gi|124515893|gb|EAY57402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leptospirillum rubarum]
          Length = 509

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/467 (15%), Positives = 145/467 (31%), Gaps = 55/467 (11%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V  +S DSR +     F    G  +   +F+  A+ +GA  +V +      I S     
Sbjct: 28  KVLSLSDDSRQVENGALFLIRPGEGF-RWEFVDEALDRGASYLVADRKAFPEIDSRPALS 86

Query: 85  --------VFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIK 134
                   +  V+++  A+ +LA +          +I +TG+ GKTT+  +      +  
Sbjct: 87  SRIRESAGLSLVENLPRAVGQLASSWWGFPSSFLKVIGVTGTNGKTTSSFLTRSVCRAGG 146

Query: 135 KTYACIGSYNNHIGVPLTL----------------ARMPVDVDFGIFELGMSHLGEIRFL 178
                IG+    +G   T                   +   +     E+  SH  +   L
Sbjct: 147 LPCGLIGTVVFDVGHEETEAPQTTPGAIRIQSLFAESLRNGLKSVSMEV-SSHALDQDRL 205

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  +   T +   HL     +E    A  K  ++E  + +  + + +    +    
Sbjct: 206 -AGTNFSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGSHPVAVVHTGDEYGARL 264

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AK      + + ++G+  +A  +  +           ++     M +     G++  QN+
Sbjct: 265 AKELERDGRRVLTYGEGADAMIRPLRVDVGLSGIRGTLRTSRGEMSIDSSLSGHYNLQNI 324

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +G    L   ++   + +       GR +R               + +A        
Sbjct: 325 LGAVGCGEALGLSMEKIAEGIHSLPGVPGRFERVDSPTGFSVIVDYAHTDDA-------L 377

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHV 411
            ++LS + P   G+ I V G     G             ++      V L+       + 
Sbjct: 378 SNLLSAVRPVTRGKVITVFG----CGGDRDRGKRPRMGSVAGRLSDFVVLTSDNPRTENP 433

Query: 412 LALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++ D +   +                          GD VV+  K 
Sbjct: 434 ESILDEIEPGLRETGTPYVRVSDRKSAIFEAIRRARPGDAVVIAGKG 480


>gi|330895231|gb|EGH27569.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 161

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++    +  
Sbjct: 36  RVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAYAA-G 90

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +S ++  G  +     A     H ++  +   L   + +       +++K S S     
Sbjct: 91  KVSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDPDTTLLIKGSRSAAMEH 148

Query: 460 LINLL 464
           ++  L
Sbjct: 149 VVAAL 153


>gi|289449693|ref|YP_003474814.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184240|gb|ADC90665.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 641

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 80/260 (30%), Gaps = 26/260 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           ++A  G +I +  Q  VN +SIDSR +     F A+ G   DGH +   A+ +GA  VV+
Sbjct: 27  IEATNGVAIRLAMQ--VNAVSIDSRLVKTGTLFVALNGEKTDGHRYWRQALAQGATAVVL 84

Query: 71  NTDMVASIGS-----LSIPVFGVDDVLGALNKLAVAAR------LRSKATIIAITGSVGK 119
                  I +     LS  V  V      L  L                       +   
Sbjct: 85  ENLPPELIEADQTDLLSRGVIIVPSTAAVLTPLCREIYGTATITRNLHGITGTDGKTTTT 144

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA------------RMPVDVDFGIFEL 167
                +L                  +   +P                ++  +    +  +
Sbjct: 145 AMITWLLNKVDYPAGSIGTLGAKLPDGRNLPTAYTTPPAPELHRLLAQLQTNGARAVC-M 203

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     +       T     HL     +E  A AKA +F GL K  T  LN 
Sbjct: 204 EVSSQAAVQHRVDALAWQTMTFTNFTVDHLDYHHTVENYALAKASLFRGLSKAATAVLNA 263

Query: 228 DDSFFELLKAKSHALGIKTI 247
           DD     L   + A  +   
Sbjct: 264 DDPLAYYLAQLTQAQKVFYY 283


>gi|257056722|ref|YP_003134554.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
 gi|256586594|gb|ACU97727.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Saccharomonospora viridis DSM 43017]
          Length = 524

 Score = 92.2 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 82/486 (16%), Positives = 146/486 (30%), Gaps = 57/486 (11%)

Query: 3   PLWTFHDLLQAIQGHSIGIV---PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           PL T   + +A     +          V G ++ ++ + P + F A+ G    G DF   
Sbjct: 27  PLTTL--VARA-DARLVADPAVAESVRVTGATLRAQHVLPGDLFAALPGARAHGADFTAD 83

Query: 60  AVQKGAGLVVVNTDMV--ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
           AV  GA  V+ + +     ++    +PV    D  G L  +A         T  ++ ITG
Sbjct: 84  AVAGGAVAVLTDEEGASRPAVRESGLPVLIHPDPRGVLGSVAAWIYGEPSLTLSVLGITG 143

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFG 163
           + GKTTT   +   L +       IG+    IG             P   A     V+ G
Sbjct: 144 TSGKTTTSYFVESGLRAAGYHTGLIGTVETRIGSERLASAFTTPEAPDLQALFADMVERG 203

Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           +  + M  S         +  R  +   T ++  HL     +E+  SAK+ +F+G     
Sbjct: 204 VTHVAMEVSSHALALGRVNGTRFTVGAFTNLSQDHLDFHRDMEDYFSAKSLLFDGRSTHE 263

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + ++              AL      +     ++D   R           +        
Sbjct: 264 IVVVDSAW---------GQALVTPRTVTVSTEPDSDAGWRATDITLTPGGEQSFTLHAPD 314

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +     +  +    + + +   V   + A+           R         FT 
Sbjct: 315 GRKAQAVLPLPGEFNVANAVLAAAILDTVGVDLDAVLEGLATVEVPGRMERVYLGQPFTA 374

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + +  +   A        L  +    EGR I V+G     G    +    +    +    
Sbjct: 375 VVDYAHKPAA----VTQALRALRARTEGRLITVIGS----GGDRDTAKRPMMGEAAARGS 426

Query: 402 SHVWLSG-----FHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             V ++          A+++A+              V                   GDVV
Sbjct: 427 DLVIVTDDNPRSEDPAAIREAILAGARAVGPAEGCEVLEIGDRREAIAAAVERAEAGDVV 486

Query: 448 VV--KS 451
            V  K 
Sbjct: 487 FVAGKG 492


>gi|171780226|ref|ZP_02921130.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281574|gb|EDT47009.1| hypothetical protein STRINF_02014 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 483

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 71/459 (15%), Positives = 133/459 (28%), Gaps = 63/459 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR +     FFA KG  +   +++  A+QKG    V   D       L 
Sbjct: 32  ENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQAIQKGLPFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+        K  IIA TG+ GKTT        L    K     
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTTAAYFAYNILKQSHKPAMFS 144

Query: 141 GSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                  G   + +++                   +   I E+  S    +    + +  
Sbjct: 145 TMNTTLDGKTFSKSKLTTPESLDLFKMMATAVDNGMTHLIMEV--SSQAYLVDRVYGLTF 202

Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +     I+P H+        E+    K  +    +                  A     
Sbjct: 203 DVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDHFKVVAEQVA----- 257

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                       +   +       + +++        +       IG    +N L     
Sbjct: 258 --------DLPHDFYGKDSDNTIENGRTFDFDVTGKLAGHYDIQLIGSFNQENALAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +   K ++            +          +D ++N +         +LS 
Sbjct: 310 CLRLGTSPEDIKKGIAETSVPGRMEVITQANG---AKVFVDYAHNGDSLE-----KLLSV 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           +  H  G    +LG     GE  ++   D A V++ +    V L+          A+ + 
Sbjct: 362 VEEHQTGNLHLILGATGNKGESRRA---DFARVINAHPNLQVILTADDPNYEDPKAIAEE 418

Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
           +   ++  +      +       S      D V++  K 
Sbjct: 419 IASQVNRPLEIEVDREKAIAKAMSLTQTADDAVIIAGKG 457


>gi|225175502|ref|ZP_03729496.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168831|gb|EEG77631.1| UDP-N-acetylmuramyl-tripeptide synthetase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 502

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/479 (12%), Positives = 118/479 (24%), Gaps = 46/479 (9%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           + T   +   +    I   P   ++GI+  S  + P + FF + G    G  ++  AV  
Sbjct: 1   MKTLGSITDVLLHKKISGSPDLEISGIAYHSGKVRPGDLFFCLPGTRSHGRRYVEEAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS------- 116
                 V      +    S  V  V DV  AL  ++          +  I  +       
Sbjct: 59  --AAGAVAVVSDMAELETSATVVTVPDVRMALALVSACFYDYPSRELAMIGVTGTNGKTT 116

Query: 117 ---------VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
                            +L      I+       +          + R   D       +
Sbjct: 117 TTYLIDALLQNSGAATGLLGTVRYHIRGEEFPSLATTPEASELQAILRRMKDEGVTYTTM 176

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK---AEIFEGLEKTGTIF 224
            +S        T        V+T I   HL      +   ++K             G   
Sbjct: 177 EVSSHALAWHRTIGCDFDTVVLTNITEDHLDFHQTFDHYLASKSKLFSWQGSFPLKGGRP 236

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                +  +             +  +G S +   +    K   +     ++      E+ 
Sbjct: 237 RRAVINGDDKHWQHFADQTPGEVMLYGLSNHCHVRANDVKVERDAVNFRLETPVGGTEIT 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G     N L  + +  +         +  +V     G   R+        FT+I +
Sbjct: 297 LKMTGLFSVYNSLAAISVGLLEG---IDLARIKAVMESVAGVPGRFELVDAGQNFTVIVD 353

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P  ++  +    + +P      + V G     G         L    +     + 
Sbjct: 354 -YAHTPDGLENVLQAAREFAPAR---VLTVFG----CGGDRDRTKRPLMGEAAGKYSDYC 405

Query: 405 WLS-----GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++           + D +   +                             DVV++  
Sbjct: 406 IVTSDNPRSEDPEKIIDEILPGLENQIDKSAYEIEPDRKAAIRRAMELAQKDDVVIITG 464


>gi|226323561|ref|ZP_03799079.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
 gi|225208245|gb|EEG90599.1| hypothetical protein COPCOM_01336 [Coprococcus comes ATCC 27758]
          Length = 173

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 7/129 (5%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +ID+ YNANP SMK+++ VLS       GR +AV+GDM E+G+     H +     +   
Sbjct: 46  IIDDCYNANPVSMKSSLDVLST----ATGRTVAVMGDMYELGDKENELHYNTGAHAAEIG 101

Query: 401 ISHVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           I  +   G       +      +S  V Y +T       I++ +   D ++VK+S+   F
Sbjct: 102 IDVICCIGELSHHAYEGAKACAKSSAVLYFKTKQDFLGKIRNVVKKDDTILVKASHGMEF 161

Query: 458 YRLINLLLE 466
             +I++L +
Sbjct: 162 PEIIDVLRQ 170


>gi|170696716|ref|ZP_02887831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
 gi|170138379|gb|EDT06592.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia graminis
           C4D1M]
          Length = 515

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 86/496 (17%), Positives = 157/496 (31%), Gaps = 62/496 (12%)

Query: 1   MNPLWT-------FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG 53
           M+ L           + L  +Q H            +  D+RS+   +AFFA      DG
Sbjct: 1   MSALRNNHPSHRQIAEALNWLQAHLQRGA------HLHADTRSLTAGDAFFAYA---VDG 51

Query: 54  HD---FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKA 108
            D   FI  A+++GA  V+V  +  +     S     V  +      +A A         
Sbjct: 52  ADNRAFIDGALERGAAAVLVQPEGFSGAIDASTT-LAVPALNELAGSIASAWYGDPSDSM 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----- 163
             + +TG+ GKT+  + ++ AL+++ K  A IG+     G+P  L               
Sbjct: 111 LTVGVTGTNGKTSCSQWISAALTALGKRCAIIGTLGT--GLPGQLVHTGFTTPDAPQLQR 168

Query: 164 -----------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                         + +S     +   +     IAV T +   HL      E   +AKA 
Sbjct: 169 SLAQLRDAGAKAVAMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKAR 228

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK------WKQC 266
           +F   E    +    D +   LL +                ++A                
Sbjct: 229 LFAWPELRAAVINRDDAAGRRLLASTQGHARTIAYGLDSAQQSAPQADASLLASNVRATP 288

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  ++        + EV    +G     N+L  LG +       D A+  L+      GR
Sbjct: 289 TGTAFHLSTSDWGNAEVEVQTLGAFNVSNLLGVLGALLAAEIPFDAALAELAKLESVNGR 348

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +R    L      ++ + Y   P +++  +  L  ++    G  I + G     G    
Sbjct: 349 MQRLGGRLQNDEPLVVID-YAHTPDALEKTLEALRPMAAARGGELICMFG----CGGDRD 403

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFI 437
           +    L   ++      V ++  +  +         +   +  +      E      L  
Sbjct: 404 ATKRPLMGAIAEKMADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQA 463

Query: 438 QSSLVDGDVVVV--KS 451
                  DV+V+  K 
Sbjct: 464 IRGAAREDVIVLAGKG 479


>gi|320007082|gb|ADW01932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 515

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/493 (15%), Positives = 140/493 (28%), Gaps = 73/493 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H     P+   +  G + D+  + P   F A+ G            ++
Sbjct: 1   MKLSELLAGQNHHIRQGDPEKALITAGTAFDADRVVPGSLFIAVPGH-----------LE 49

Query: 63  KGAGL-----------VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--AT 109
            G G            VVV    V    +  + V  V D        A            
Sbjct: 50  GGPGAVAPALARGAAAVVVEDGCVVPTAAGDVCVVQVPDARRTAAVAASRYFGEPGRRMD 109

Query: 110 IIAITGSVGKTTTKEML----------------TIALSSIKKTYACIGSYNNHIGVPLTL 153
           ++AITG+ GKT+   M+                T       +      S  +    P   
Sbjct: 110 MVAITGTNGKTSVSYMVESALRISEGARAGVIGTAGSRIGDELIPMPRSVLSTPESPDLQ 169

Query: 154 ARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             +    D G+    L  + +G +          + V T ++  HL +   +E    AK 
Sbjct: 170 YLLGYMRDRGVGTVVLEATSMGLLTHRIDRTFIDVGVFTNLSQDHLDDHGTMENYRDAKL 229

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +F+G      +  +   +  + + A+  A+    + ++     ADF+       +  + 
Sbjct: 230 RLFQG------LCEHAVVNADDPVGARIGAMMPGAVTTYALDAEADFRATDLTADASGTR 283

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +  QG+         G     N L  +     L  D+   + AL       GR +R  
Sbjct: 284 FTLHHQGRKYPAAIPTPGRFSVSNALAAMAACHTLGHDLAGLVSALGRMPQIPGRFERLT 343

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                               S  +   VL  +        + V G     G    +    
Sbjct: 344 TVGGTSVIVDYA-------HSPDSLEKVLGAVRGFARSAVVTVFG----CGGDRDTTKRT 392

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSL 441
               ++  +   V L+           + D +   I                  F  S+ 
Sbjct: 393 DMGRIAGTHSDLVVLTSDNPRTEDPEVIMDQVVPGIEATGTPYERFTDRRTAIEFALSAA 452

Query: 442 VDGDVVVV--KSS 452
              D+V++  K S
Sbjct: 453 GPDDIVLIAGKGS 465


>gi|88608103|ref|YP_506362.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
 gi|88600272|gb|ABD45740.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase,
           truncation [Neorickettsia sennetsu str. Miyayama]
          Length = 325

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/262 (25%), Positives = 103/262 (39%), Gaps = 16/262 (6%)

Query: 4   LWTFHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FI 57
           L T   +   ++   I           +  S++   +   E F  I       HD   FI
Sbjct: 2   LLTADLIRSILKAELICEYQAKIDISRSKFSMNCEKVGKGEIFV-IADAKN--HDIPCFI 58

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A   GA  ++   D+  +   + IP+  VDD L A+ KLA       + T+I ITGS 
Sbjct: 59  ETAYLNGASAIITKKDI--ACPKIPIPIIRVDDPLRAMEKLAAILIRNYQPTVIGITGS- 115

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            KT TK ++   L +  KT        N  G  L +        F + E+  +  G +  
Sbjct: 116 SKTLTKNLIVTLLKNYGKTCYNEDGTGNFAGFTLGILNADFPCKFLVLEVDTTCSGNVDL 175

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              +  P + VIT I      +    E I   KA+IF+     G I +   D+ +  L  
Sbjct: 176 FNQITLPKVGVITDIRFHQDRSIDLRELIVMEKAKIFQN----GCIAVLNFDTPYTELLL 231

Query: 238 KSHALGIKTIYSFGKSKNADFQ 259
           +       TI SFG+++N D Q
Sbjct: 232 QEARKNKATIISFGRNENCDVQ 253


>gi|220925313|ref|YP_002500615.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
 gi|219949920|gb|ACL60312.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           nodulans ORS 2060]
          Length = 488

 Score = 92.2 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 85/458 (18%), Positives = 152/458 (33%), Gaps = 34/458 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            + G      V G++ DSR + P   F A+ G   DG  F   A   GA  +V       
Sbjct: 13  EAAGPEAGIPVTGLTADSRRVRPGFVFVAVPGTTMDGRSFATAAAAAGAVAMVTEGPRPE 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           ++ +  +    V D   AL   A     R   TI+A+TG+ GK++  + +   L+ + + 
Sbjct: 73  ALPAE-VAYLAVPDARRALALAAARLFARQPETIVAVTGTSGKSSVADFVRQVLARLGRR 131

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLV 182
            A +G+     G       +       + E              +  S  G  +     V
Sbjct: 132 SASLGTLGVVTGEGAAYGSLTTPDPVTLHETLDRLAGDGITDLAMEASSHGIEQRRLDGV 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHA 241
           R   A  T +   HL      E   +AK  +FE  L    T  +N D    + + A   A
Sbjct: 192 RLTAAAFTNLGHDHLDYHHTPEAYLTAKLRLFETLLPDAATAIVNADGPMADRVAASVRA 251

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            G+  + +         +L   +       + ++ +G++ +V    +G    +N L+  G
Sbjct: 252 RGLPLVTT--GLSGETLRLSAVETRGFAQALTIKAEGRAYQVDLPLVGGFQVENALVAAG 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +V    A      + ++      G   R            + +  +   A       VL 
Sbjct: 310 LVLATPAGRGRLPEVVAALGHLAGVPGRLERVATHNGALCVVDYAHKPEA----LAGVLQ 365

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL-K 415
            + P   GR + V+G     G         +   +++     V ++          A+  
Sbjct: 366 ALRPFTTGRLVCVMG----CGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRSEDPAAIRA 421

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + L  +                   L  GDV+VV  K 
Sbjct: 422 EILAAAPGAEEIGDRAEAIRTAVRGLGPGDVLVVAGKG 459


>gi|315221934|ref|ZP_07863845.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
 gi|315188900|gb|EFU22604.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus anginosus
           F0211]
          Length = 481

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 80/476 (16%), Positives = 142/476 (29%), Gaps = 65/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F +++   +G             IS DSR +     FF +KG ++   +F+  AV  G 
Sbjct: 16  NFREIID--KGQYFYHYRDLVFEKISYDSREVDASTLFF-VKGDNFK-KEFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
            L +   D       + IP   V+DV  A++ LA+      + K  ++A TG+ GKTT+ 
Sbjct: 72  QLYISEMDF-----EVGIPALIVNDVKQAMSLLAMEFYGNPQDKLKLLAFTGTKGKTTSA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP----------------VDVDFGIFEL 167
                 L    K            G     + +                       I E+
Sbjct: 127 YFAYHILQQSHKPALLSTMNTTLDGEHFFKSALTTPESLDLFKMMATAVENGRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    ++   + +   + V   I+P H+        E+    K  + E          
Sbjct: 187 --SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSLAVVVNSE 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                      A                 +   Q    +    Q++        + +   
Sbjct: 245 MDHFEVLAEQVA-------------SMEHDFYGQHSDNQIRHSQAFSFETSGKLAEKFDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG    +N L  +     L A V    K ++            +    + F       
Sbjct: 292 QLIGRFNQENALAAVLACLRLGASVADIKKGIASTRVPGRMEVLTQQNGAKVFVDYAHNG 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +          ++LS +  H +G+ I VLG     GE  +    D   +L+ +    V 
Sbjct: 352 VSLA--------NLLSVVQEHQKGKIILVLGATGNKGESRRK---DFGLLLNQHPELTVI 400

Query: 406 LSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
           L+         +A+   +    S  V              S    +GD V++  K 
Sbjct: 401 LTADDPNYEDPIAIAKEIASYISFDVDIIADRKEAIKIALSLTNREGDAVILAGKG 456


>gi|163815921|ref|ZP_02207291.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
 gi|158448731|gb|EDP25726.1| hypothetical protein COPEUT_02101 [Coprococcus eutactus ATCC 27759]
          Length = 507

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/488 (12%), Positives = 134/488 (27%), Gaps = 59/488 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-----PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD 55
           M        LL  +    +               I+I+S+ + P   F   KG  +   +
Sbjct: 1   MKENLQLTTLLDILDQQKLVTDYSEDCKDISPTHITINSKDVVPGTFFVC-KGASFK-EE 58

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAI 113
           ++  A+ +GA + +           + IP   V D+  A+   A           T + I
Sbjct: 59  YLKSAISQGAIVYLSQQKYDG----VDIPYIIVSDIRKAMALAARWFFGNPGDNLTKVGI 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTL--------ARMPVDVDFGI 164
           TG+ GKTT   ++   L            ++   +G  +            +    D  +
Sbjct: 115 TGTKGKTTVTFVMKDILDKYTDNRCAAFSTHEIDVGTKVFETTLTTPEPIELQTYFDMAV 174

Query: 165 FE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG 216
            E      + +S         +     + V T I   H+S    + +E+    K    + 
Sbjct: 175 NEGCTHCIMEVSSQAMKMNRIYGEHYKVGVFTNIDYDHISPTEHASMEDYLGCKVSFLKQ 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----------RKWKQC 266
            +                     H +   +  S  K  + D                   
Sbjct: 235 CDNVVLYSDTRYFETIYNEVRDKHVVVYGSKESVEKLMSRDDDFFEKDTEFASIHNEDLT 294

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S+ E+   G++     + IG +  +N++  +    ++    +    ++   +     
Sbjct: 295 DHNSYFELIYGGENRAYNTNLIGDYNVENIVAAIISSLLIGIPNEQIRSSIRDIYVPGRL 354

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                   +    T + + Y  N  SM     ++             V G     G    
Sbjct: 355 -----QVYHWKDRTFMID-YAHNYISMYRLYEMVK--KTMKPKSITVVFG----CGGERY 402

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHV-----LALKDALPR--SIHVHYSETMDGLFLFIQS 439
               +    L+      V L+           +   + +  +   +     +        
Sbjct: 403 KKRREDMGRLAEQYADKVVLTMEDPGFESCEDICKEIKQYITKPCYIIVDREEALTRALD 462

Query: 440 SLVDGDVV 447
               G++V
Sbjct: 463 EAQPGELV 470


>gi|218441130|ref|YP_002379459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanothece sp. PCC 7424]
 gi|218173858|gb|ACK72591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7424]
          Length = 496

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 79/490 (16%), Positives = 160/490 (32%), Gaps = 65/490 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---- 57
           +    +LL  +    I   P     V GIS +S +    + F  + G   DG +F     
Sbjct: 1   MIKLRELLTKVPSLVIPEHPALDKEVKGISTNSHACQLGDVFIGMPGTRVDGGEFWTSAI 60

Query: 58  ----------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS- 106
                       A                   +  + V    D++    +++ A      
Sbjct: 61  EAGAIAAIITPQA-------------GSKYPPTEDVCVIQAADMVSICAEISAAFYGYPA 107

Query: 107 -KATIIAITGSVGKTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMP 157
            +  +I +TG+ GKTTT  ++   L+  +              G     +        + 
Sbjct: 108 QQMKMIGVTGTNGKTTTTHLIEYFLTQSQFNTALLGTLYTRWQGYQQTALHTTPFATELQ 167

Query: 158 VDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             +   +        + +S     +         +AV T +   HL     +E+  +AKA
Sbjct: 168 EQLAQAVKAGSEYAVMEVSSHALAQRRVAGCPFEVAVFTNLTQDHLDFHKDMEDYFNAKA 227

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +F     TG   +N DD + + L       G K       + +A+F  +     +    
Sbjct: 228 LLFSPDYLTGRAIINLDDPYGQRLIN--SLSGEKVWSYSVNNPDANFYTKDLTYEANGVS 285

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +      +      +G +   N+L  +G V  L  D+ + +++L +F    GR +R +
Sbjct: 286 GILHTPIGEVNFYSPLVGQYNIANLLAAVGAVVHLGVDLKSIVESLPLFSAVPGRMERVK 345

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            +  Q    ++D ++  +        ++L    P  EG+ I V G     G+  ++    
Sbjct: 346 ISDKQDISVIVDYAHTPDSLE-----NLLKAARPFIEGKMICVFG---CGGDRDRTKRPK 397

Query: 392 LAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
           + ++ +      V  S           +  +   +P+S+                     
Sbjct: 398 MGKIAAELADLAVVTSDNPRTENPEQILEDILAGIPQSVKPVVISDRAEAIRTAIMDAKP 457

Query: 444 GDVVVV--KS 451
           GD V++  K 
Sbjct: 458 GDGVLIAGKG 467


>gi|313673688|ref|YP_004051799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940444|gb|ADR19636.1| UDP-N-acetylmuramyl-tripeptide synthetase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 484

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/476 (17%), Positives = 145/476 (30%), Gaps = 56/476 (11%)

Query: 7   FHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ-K 63
             DLL+ I    +         V+ IS +++ I P  AF  +KG  +D ++ I      K
Sbjct: 3   VRDLLKGIPVKWVSDDKLYDIDVDNISFNTKDIKPNSAFLLVKGISFDPYEMIDEIFDSK 62

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTT 121
              L +    +         P   V++       +         SK   I ITG+ GKTT
Sbjct: 63  KVKLFITEKPLPEK------PHILVENARRTFGMICRNFFNIDFSKIKSIGITGTNGKTT 116

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------ 169
           T  ++   L         IG+    I      A       + IFE+              
Sbjct: 117 TNYLIDSILRVSGYKTIRIGTTEYVIVDEKIEANNTTPGIYDIFEMVAKGVKKGASAVCM 176

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              SH  +   + + +   +AV T +   HL     +E    +K ++F            
Sbjct: 177 EVSSHALDQDRV-YGLNFDVAVFTNLTGDHLDYHKTMEHYYQSKKKLFTKEYSKNAAINI 235

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D        + +       YSF K    D  +       +     V +  + + +  H
Sbjct: 236 DYDYG-----KRLYNEVEIAKYSFSK-GKGDVGVVDVSYSLDGINCRVNIGDEVISLNSH 289

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N+L  +    IL    D  I+ +  F    GR +++             +  
Sbjct: 290 LVGRHNLENILGAVTATYILGISKDDIIRGVEQFKNVPGRLEKFEKNGAY----FFVDYA 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + + A      +VL  +    +GR I V G     G             ++      V +
Sbjct: 346 HTDDA----LKNVLEALKGFKKGRLITVFG----CGGDRDRTKRPRMAKVAEVYSDIVIV 397

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +         V                   GD+V++  K 
Sbjct: 398 TSDNPRTEDPNAIIDEILTGFENRSKVLVDPDRRIAIKKACDEAKAGDIVLIAGKG 453


>gi|39936597|ref|NP_948873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
 gi|39650453|emb|CAE28976.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris CGA009]
          Length = 485

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 73/450 (16%), Positives = 141/450 (31%), Gaps = 34/450 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              + G+++DSR++ P + FFA+ G   DG  F+  AV  GA  V          G LS+
Sbjct: 19  DLTIGGLAVDSRAVKPGDLFFALAGAKTDGARFVAAAVAAGAVAVAGEHR---PEGDLSV 75

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P   + +   AL + A     R    I A+TG+ GKT+           +    A IG+ 
Sbjct: 76  PFVQLSNARLALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHAAASIGTI 135

Query: 144 NNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVI 189
                       +       +                L  S  G  +F    VR      
Sbjct: 136 GLVTPTRSVYGSLTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVAAGGF 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T ++  H+     +    +AK  +F  L + G   +   D        ++       + +
Sbjct: 196 TNLSRDHMDYHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLRLIT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G++ +    ++      E    ++ ++                Q     +    ++   
Sbjct: 256 IGRNGDPGAGIKLIDAAVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVIGTG 315

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D A    ++ H +   G+        G    +D ++  +  +       L  + P+ + 
Sbjct: 316 GDAAASFAALEHLEGAPGRLDLVGARNGAPVFVDYAHKPDALA-----KTLQALRPYAKR 370

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIH 423
           + + V G     G    S    L   ++  N   V ++  +  +          L  +  
Sbjct: 371 KLVVVFGA----GGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRAAILAAAPG 426

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                            L  GD +V+  K 
Sbjct: 427 AREIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|329117147|ref|ZP_08245864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
 gi|326907552|gb|EGE54466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus parauberis NCFD 2020]
          Length = 483

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 66/473 (13%), Positives = 148/473 (31%), Gaps = 62/473 (13%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + ++ DSR +     FFA KG  +   +++  A++ G    V   D       + IP
Sbjct: 33  LTFSNLTYDSRKVDMSTLFFA-KGAAFKA-EYLESAIKLGLTAYVSEVDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A+  +A       + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AIIVTDIKKAMAIIAKDFYGNPQDKLKLLAFTGTKGKTTAAYFAYNILQESHKPAMLSTM 145

Query: 143 YNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                G     +++                   +   I E+  S    +    + +   +
Sbjct: 146 NTTLDGKTFFKSQLTTPESLDLFQMMSTIVDNGMTHLIMEV--SSQAYLVERVYGLTFDV 203

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + E       + +N D   F++L  +      
Sbjct: 204 GVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSR---AVIINSDMDHFDILAEQVANQEH 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S  +++  + Q          ++        + +     IG    +N         
Sbjct: 261 DFYGSQSENQILNSQ----------AFTFSANGKMAGDYDIQLIGKFNQENATAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L AD+    + ++                +     +  +  +   +       +++ + 
Sbjct: 311 RLGADLTDIKQGIARTSVPGR----MEVISHPSGAKVFVDYAHNGDS----LEKLVTVVE 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
            H +G    ++G     GE  ++   D  +V++ +    V+L+           +   + 
Sbjct: 363 EHQKGNISLIIGATGNKGESRRA---DFGQVINNHPTLKVYLTADDPNFEDPQDICQEIA 419

Query: 420 RSIH--VHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             ++  V                   +GD +++        Y+++N    ++P
Sbjct: 420 NHVNRSVSIIADRTKAISTAIKDCQKEGDALIIAG-KGADAYQIVNGQKTDYP 471


>gi|324998161|ref|ZP_08119273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudonocardia sp. P1]
          Length = 534

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 77/467 (16%), Positives = 143/467 (30%), Gaps = 51/467 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV--ASIGSLSI 83
            V G ++ + S+ P + F A+ G    G DF   A+  GA  V+ + D      I    +
Sbjct: 50  VVTGATLRAGSVRPGDLFAALPGARAHGADFAAQAIAGGAAAVLTDADGADRPEIRHSRL 109

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV         L  ++ A       +  ++ +TG+ GKTT   +L   L++  ++   +G
Sbjct: 110 PVLVHPAPREVLGPVSAAIYGEPTARLRVLGVTGTSGKTTVGHLLEAGLTAAGRSTGLLG 169

Query: 142 SYNNHIGVPLTLARMPVDV-----------------DFGIFELGM--SHLGEIRFLTHLV 182
           +    + VP    R                      + G+ ++ M  S            
Sbjct: 170 TVRTRVQVPGEEPRALPSAFTTPEAPDLQALFAVMVEAGVTDVAMEVSSHALALGRVGGS 229

Query: 183 RPHIAVITTIAPAHLSNF----SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           R  +   T ++  HL          E  A        G+E      +  DD +   L ++
Sbjct: 230 RFAVGAFTNLSQDHLDFHPTMTDYFEAKARLFGGGGAGVEAARHGVVCIDDEWGRQLASR 289

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                       G       +         Q++  V   G +  V     G +   N L+
Sbjct: 290 RPDAVTVGSDPAGPHATWTVRDLAAHPDGTQTFTAVGPGGLAQAVTLALPGRYNVANALV 349

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L  +       + A +  +            +       +  + +  +   A      +
Sbjct: 350 ALACLDADGIPPEVAAQGFARLSVPGR----MQRVDAGQPWLAVVDYAHKPAAVAALLDA 405

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLA 413
           + +QI PH   R I VLG     G    +    L    +      + ++     G     
Sbjct: 406 LRAQIHPHA--RVITVLG----CGGDRDTGKRPLMGAAAAIRSDTLVVTDDNPRGEEPAT 459

Query: 414 LKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++ A+            V          ++   S   GD VV+  K 
Sbjct: 460 IRRAMLEGAMHEPARGDVIEIGDRRSAIVYAVRSARPGDAVVIAGKG 506


>gi|206889487|ref|YP_002249134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741425|gb|ACI20482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 482

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 85/452 (18%), Positives = 145/452 (32%), Gaps = 66/452 (14%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLA 99
           I G    GH     A++  A +VVV+  +  S  S        IPV G         +L+
Sbjct: 64  IIGE---GHP--PEALEN-ADIVVVSPGVPLSTPSIVSAVYKGIPVIG-------EIELS 110

Query: 100 VAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARM 156
                  +    II ITG+ GK+TT  +    L    K     G+    +  V L L   
Sbjct: 111 WQILSLIKENVKIIGITGANGKSTTSTLTYEFLKRDGKKVQLAGNIGYPMAEVVLKLLNK 170

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +D+++ + EL    L          +P  A I  I P H+  +S ++E   AKA+IF+ 
Sbjct: 171 EIDMEYLVLELSSFQL----EGIKTFKPDFAAILNITPDHMDRYSDMKEYIEAKAKIFQN 226

Query: 217 LEKTGTIFLNYDDSF----FELLKAKSHALGIKTIYSF--------GKSKNADFQLRKWK 264
                 + LN DD       E L+      G      +        G     D      +
Sbjct: 227 QNGDDYLILNMDDENTISAIEYLRNVYLKKGKLPHVFYFSRVQNVYGAYLKNDSIYFNAR 286

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           +       +               G H  +N++    +         +    +  F    
Sbjct: 287 EEVSDDIKKEMENTVLSVSTFKIKGIHNVENIMAASLLALCSGCKGQSIKDVVQQFPGLP 346

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R               I++S   N  ++K ++           G  I + G   + G+ 
Sbjct: 347 HRM---EPVREIDGVIYINDSKGTNVDAVKKSLESF-------PGNVILIAGGRDKDGDF 396

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S        + +    +  + L G     + DAL   +  +    M    +  +     G
Sbjct: 397 SA------LKSIVKEKVKALLLIGEAKHKIADALGDLVPCYLESDMKSAVIKAKEIARAG 450

Query: 445 DVVVV---KSS---------NSCGFYRLINLL 464
           DVV++    +S             F  ++N L
Sbjct: 451 DVVLLSPGCASFDMFKNFEHRGEVFKDIVNSL 482


>gi|114330911|ref|YP_747133.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
 gi|114307925|gb|ABI59168.1| peptidyl-tRNA hydrolase [Nitrosomonas eutropha C91]
          Length = 617

 Score = 91.8 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 153/380 (40%), Gaps = 19/380 (5%)

Query: 99  AVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           A    LR + T  I ITGS GKTTTK++  + LS          S N        +  + 
Sbjct: 23  AWLHLLRLRHTSFIGITGSAGKTTTKDLCYLILSGFYPVAQSYKSLNVVKATADFVLEVE 82

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFE 215
               F I E+  +  G +     LV+P IAV+T I   H   F    ++ IA  KA++ E
Sbjct: 83  SKHRFSIIEMSGNRPGALDLPLWLVKPEIAVLTNIEKDHFRAFKGESVDGIAREKAKLIE 142

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L + GT  LN DD   +++  +  A  I    S G +      L       +   + ++
Sbjct: 143 ALSENGTAVLNMDDPRVKVIGERCKAKVIWVGKSKGATLRL---LNATSSYPQPLTLTIK 199

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +G + EV+    G ++A ++L  LG+       +D AI  L++  P EGR +       
Sbjct: 200 YEGITHEVITGLHGTYLATSVLCALGVALAAGIRLDQAIPRLALAVPVEGRMQPVVMGDG 259

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
             F     ++         +   VL  +S     R+IAV+G + +        +   A  
Sbjct: 260 VTFIRDDMKA------PAWSLPMVLDFLSEATAVRKIAVVGSISDFSGDRSDKYKQFARQ 313

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +   +   V   G +      A             T+     F+Q +L  GD+V++K SN
Sbjct: 314 VLQ-HADMVIFVGDNAHRALRARKDENDSALQGFLTLKEASSFLQKTLRPGDLVLLKGSN 372

Query: 454 -SCGFYRLINLLLEEFPAIQ 472
            S    RL   +L+ +  IQ
Sbjct: 373 KSDHLQRL---ILDRYKPIQ 389


>gi|148556853|ref|YP_001264435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
 gi|148502043|gb|ABQ70297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sphingomonas wittichii RW1]
          Length = 487

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 76/219 (34%), Gaps = 16/219 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DLL      +        + G +ID R +AP   F A +G  ++G DFI  AV   
Sbjct: 1   MRLTDLLAGFPATTGADAGDARITGFAIDHRKVAPGTVFGAFRGSRFNGEDFIAQAVAD- 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
               +V+   VA   ++   V  VDD       +LA         T +A+TG+ GKT+T 
Sbjct: 60  GAAAIVSAPGVAVGSAIGGAVHIVDDEPRRLFARLAARFFAPFPDTTVAVTGTNGKTSTV 119

Query: 124 EMLTIALSSIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GM 169
           E+                          + +      +   L+ M      G+       
Sbjct: 120 ELTRQLWRMAGFHAASIGTLGVTTADEQVSTGLTTPDIVTFLSNMAGLRKEGVTHAAFEA 179

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           S  G  ++ T  +    A  T ++  HL     +E   +
Sbjct: 180 SSHGLSQYRTEGLPVRAAAFTNLSRDHLDYHGTMEAYFA 218


>gi|257785019|ref|YP_003180236.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
 gi|257473526|gb|ACV51645.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium parvulum DSM
           20469]
          Length = 517

 Score = 91.5 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 68/484 (14%), Positives = 142/484 (29%), Gaps = 51/484 (10%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            L+T  ++ +    H   +     +  ++ DSR + P   F   KG  +    ++  AV+
Sbjct: 8   ALFTSKNI-EYTTAHFDAVDQNAQLTDVASDSREVIPGSLFVC-KGASFSP-AYLTSAVK 64

Query: 63  KGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVG 118
            GA   +    +   + ++  ++    VDDV  A+  +A         K T I ITG+ G
Sbjct: 65  AGAVAYLCQRSLAEELQAVAPNVAAIHVDDVRFAMAYVAAGVAGHPDKKLTTIGITGTKG 124

Query: 119 KTTTKEMLTIALSSIKKTYAC--------------IGSYNNHIGVPLTLARMPVDVDFG- 163
           K+T   ML   L   +    C                ++N     P     +    + G 
Sbjct: 125 KSTCSYMLRAILDGDEPYSKCGVIGGIEVFDGKDTQPAHNTTPEAPELWRHLKHAAEAGL 184

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKT 220
              ++ +S  G     T  +   +AV   I   H+S       E+   +K +IF+     
Sbjct: 185 PYVDMEISSQGLKYDRTVDLNLSVAVFLNIGTDHISPVEHPTFEDYFESKLKIFDLARVA 244

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                            +   +   +      +  AD    +           V     +
Sbjct: 245 VVNKNTMMFDQVMERAQRCEKVLTFSTTDSDATVWAD----EITPHQGMVTFTVHTPTWT 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G    +N L  + +   L         A+      +  G+    +      T
Sbjct: 301 SSAALPMSGLFNVENALAAITVADYLGIREKD---AVLPLMNVKVPGRMELLSSPDNKVT 357

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +  +   +       + S  +    G    V+  M  +G  + +   +L E  + + 
Sbjct: 358 GLVDYAHNKLS----YQKLFSSTAKEFPGYGRYVV--MGAVGGKAYNRRQELPEEAAKWA 411

Query: 401 ISHVWLSGF------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVV 447
              ++ +                 A  +     I +   + +                 +
Sbjct: 412 DLMIYTTEDCNMEDPAVICAQMAEATPEGAAHKIILDRYDAIYEAVSAAYDDPRPSLVYL 471

Query: 448 VVKS 451
           + K 
Sbjct: 472 LAKG 475


>gi|251781849|ref|YP_002996151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
 gi|242390478|dbj|BAH80937.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
          Length = 481

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 76/476 (15%), Positives = 140/476 (29%), Gaps = 65/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L A   H            +S DSR +  +  FFA KG  +   D++  A+ KG 
Sbjct: 16  NFREVLDADGYHYHYQG--LSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAIAKGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
            L V   D       L IPV  V D+  A++ +A+A     + +  ++  TG+ GKTT  
Sbjct: 72  PLYVSEVDY-----KLDIPVVLVTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----------------PVDVDFGIFEL 167
                 L    K            G     +++                   +   I E+
Sbjct: 127 YFAYHILKESYKPALLSTMNTTLDGQTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    +    + +   + V   I+P H+        E+    K  + E          
Sbjct: 187 --SSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSG 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                F     A              +       L   +  + Q++        +     
Sbjct: 245 MDHFPFLANQVAN-------------QEHAFYGALSDNQITTSQAFSFEANGQLAGHYDI 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG+   +N +        L A +    K ++                     T   + 
Sbjct: 292 QLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRVPGRM--------EVLTMTNHAKV 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +     +  +   +LS +  H  G  + +LG     GE  ++   D   V++ +    V 
Sbjct: 344 FVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKGESRRA---DFGAVINQHPNLTVI 400

Query: 406 LSG-----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
           L+           +   +   I   +      +       S      D V++  K 
Sbjct: 401 LTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQKAMSLCQGPEDAVIIAGKG 456


>gi|302672146|ref|YP_003832106.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
 gi|302396619|gb|ADL35524.1| UDP-N-acetylmuramyl pentapeptide synthase MurF [Butyrivibrio
           proteoclasticus B316]
          Length = 539

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 138/360 (38%), Gaps = 23/360 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II ITGS GKT+ K  LT  LS   +      SYN  +G V      +    +
Sbjct: 181 REHPGLRIIGITGSFGKTSVKYYLTTLLSEGYRVLMTPESYNTPMGIVRTIREHLMPTHE 240

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+G  HL +I+ +T +V P   ++T+I   HL  F  ++ I S K E+ + +++  
Sbjct: 241 IFVCEMGARHLHDIKEITDIVHPDDGILTSIGHQHLETFHSLDNIISTKYELLDAVDEKM 300

Query: 222 T-----IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ- 275
                        +    +   +         ++G S+  D++    K     +   V  
Sbjct: 301 KADGKKDAHLKFVNGDNEIIRANMKYEDAI--TYGLSEGCDYRATDIKVSGSGTSFTVTA 358

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G++ E     +G H  +N++  +   + L   +     A+        R +  +    
Sbjct: 359 PNGETCEFATKLVGRHNVENIVGAIAAANSLGIPMTKLRIAVRRLASVPHRLELIKH--- 415

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  +++D++YN+NP   K A+  L       +   I V   M E+GE    ++ +  + 
Sbjct: 416 -GPVSILDDAYNSNPNGAKVALETLDLFEDQVK---ILVTPGMVELGEKEDEYNKEFGKQ 471

Query: 396 LSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSS-LVDGDVVVV 449
            +     ++ L G  +  ++K            +    T++     +         V+++
Sbjct: 472 AAAV-CDYIILVGEKNSASIKAGAIEGGFDPERIFIKNTLNEATALMYEIDAGREKVILL 530


>gi|83592291|ref|YP_426043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575205|gb|ABC21756.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum rubrum ATCC 11170]
          Length = 493

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 93/475 (19%), Positives = 167/475 (35%), Gaps = 43/475 (9%)

Query: 7   FHDLLQAIQGHS-------IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             DL+ A+   +       +G  P   + G++ DSR++AP   F A+ G   DG  FI  
Sbjct: 3   LDDLIGAVPARAALGGHPGLGGHPGLAIAGLTADSRAVAPGWLFAALPGVKADGRAFIPA 62

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+       V+  +  A        +    +   A  ++A A      AT++A+TG+ GK
Sbjct: 63  ALAA-GASAVLAPEGTALPPDAPAALVTAANPRQAFARMAAAFAGAQPATVVAVTGTNGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGV-----------PLTLARMPVDVDFGIFE-- 166
           T++          + +T A +G+     GV           P++L +M  ++     +  
Sbjct: 122 TSSVSFTRQIWDRLGRTAASLGTLGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDAL 181

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIF 224
            +  S  G  ++    VR   A  T +   HL     ++   A+      E L + G   
Sbjct: 182 AMEASSHGLDQYRLDGVRLSAAAFTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAV 241

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD  F  L A     G   +           +L      +    ++++L G+   V+
Sbjct: 242 LNADDPAFPTLAALCRDRGQSVLDY--GRSAKTLRLAGVSAKAHGQSLDLELFGRHHSVL 299

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+L  LG+     A VD A+  L+      GR +      +      +D 
Sbjct: 300 LPLVGDFQAMNVLCALGLAIATGAPVDAAVATLASLEGVPGRLEMVARRASGA-PVYVDY 358

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++  +       ++ L  + PH  G+ + V G     G         L            
Sbjct: 359 AHTPDG-----LVTALRALRPHCRGKLVCVFG----CGGDRDRAKRPLMGRAVAEGADVA 409

Query: 405 WLSG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L+          A++             +  D       + L   D++V+  K 
Sbjct: 410 ILTDDNPRSEDPAAIRAEARVGCPDAIEIDGRDAAIRAGVALLGPNDLLVIAGKG 464


>gi|257889005|ref|ZP_05668658.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257897600|ref|ZP_05677253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
 gi|257825068|gb|EEV51991.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,141,733]
 gi|257834165|gb|EEV60586.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com12]
          Length = 509

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 153/471 (32%), Gaps = 53/471 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEV--SSQA 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 203 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+    + +    +  +    ++    + I   
Sbjct: 259 YFDLLKETADLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLA 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A +        G+  +     G    +D ++N    
Sbjct: 319 GGFNQENAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTNGAHVYVDYAHN--YL 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS         +    
Sbjct: 377 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLTADDPA 431

Query: 409 -FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + +  +I      VHY            +     D VV+  K 
Sbjct: 432 FEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 482


>gi|163815239|ref|ZP_02206616.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
 gi|158449434|gb|EDP26429.1| hypothetical protein COPEUT_01399 [Coprococcus eutactus ATCC 27759]
          Length = 540

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/505 (14%), Positives = 144/505 (28%), Gaps = 78/505 (15%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+   I       +  I  DSR ++P   F   +G   +G  +I  A+ +GA  +++  +
Sbjct: 10  IRYELIKGSLDADICDIVDDSRQVSPNAVFVCRRGAVTNGRKYIGDAISRGAAGIIITDE 69

Query: 74  MVASIG--------------SLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           +  S                     V  + D   ++ +L          + T+I +TG+ 
Sbjct: 70  VWDSEDVYDADSMSGSLGYYPDDFFVVVMHDKRYSIGRLCNNFWGYPSRELTVIGVTGTK 129

Query: 118 GKTTTKEMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARMP----VDVD 161
           GKTT   M+   L +                 + + S N   GV      +         
Sbjct: 130 GKTTVTYMMKKVLETCGCKTGLIGTIEVDDCSSQVQSVNTTPGVVQLHRILHNMVSNGAR 189

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219
             + E+  S  G +      V   I + T I+P H+        EE    K+ +F     
Sbjct: 190 CCVMEV--SSQGIMLGRVSGVDFDIGIFTNISPDHIGKNEHKTFEEYIRWKSTMFSMCRY 247

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME------ 273
                 +            + A     +  +G +  +     K  +      +       
Sbjct: 248 AVINMDDVYAPCICNGIQVNGAKKCSGVIGYGMNIWSKELYDKISEHMPVYDIHFSLYIG 307

Query: 274 ---------------VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                           +      + V   I      N+   L +++              
Sbjct: 308 DQLAMAYNGITPGTECECVMPDGDRVPIHIDMPGLFNVYNALAVIAAGDVLGFPRSTVSK 367

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                  RG+    A+ +G +  ID ++N          +VL  +  +  G+   V G  
Sbjct: 368 ALEDICVRGRMECAAVYRGAYVYIDYAHNPVSLE-----NVLKTLRSYFGGKIFCVFG-- 420

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDAL-PRSIHVHYSE 428
              G            ++S        ++  +         +  ++D L           
Sbjct: 421 --CGGNRAKSRRIGMGMVSGKMADLTIVTNDNPRFEDPEAIMDDIEDGLNAAGAEYIRIP 478

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +     V GDVV++  K 
Sbjct: 479 DRKKAIRYGIVHAVAGDVVLLAGKG 503


>gi|227550279|ref|ZP_03980328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|293379063|ref|ZP_06625216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
 gi|227180580|gb|EEI61552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium TX1330]
 gi|292642342|gb|EFF60499.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecium PC4.1]
          Length = 501

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 153/471 (32%), Gaps = 53/471 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+    + +    +  +    ++    + I   
Sbjct: 251 YFDLLKETADLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A +        G+  +     G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQTNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS         +    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLTADDPA 423

Query: 409 -FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + +  +I      VHY            +     D VV+  K 
Sbjct: 424 FEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 474


>gi|13471554|ref|NP_103120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
 gi|21362712|sp|Q98KA8|MURE_RHILO RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|14022296|dbj|BAB48906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Mesorhizobium loti MAFF303099]
          Length = 484

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 86/472 (18%), Positives = 150/472 (31%), Gaps = 42/472 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL   +            V GIS DSR + P   FFA+ G   DG  +   A ++G
Sbjct: 1   MKLRDLAGVLPVEGT-ASADLEVTGISSDSRQVKPGVVFFALAGTKADGAAYAADAARRG 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A  VV       S+  L +PV  VDD   AL   A     +   T++A+TG+ GKT+   
Sbjct: 60  ALAVVAGK--SNSVAGLPVPVLTVDDPRLALALSAARYFGKQPRTMVAVTGTSGKTSVAA 117

Query: 125 MLTIALSSIKK--------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
                                                     L R   D       +  S
Sbjct: 118 FTRQIWEQAGYAAASIGTTGVVAPGRNEYGSLTTPDPVALHQLLRELADAGVTYASMEAS 177

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     V+      T +   H+     +E+   AK  +F+ L   G   + + D 
Sbjct: 178 SHGLDQRRLDGVKLAAGGFTNLGRDHMDYHPTVEDYHRAKLRLFDTLLPKGAPAVIFADD 237

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +     ++       + + G+  +    L++ +    +   EV+ +G   E+     G 
Sbjct: 238 PWSAPTIQAAQAAGLNVLTVGRHGDF-LTLKRVEHERHRQRAEVEAEGVLYEIDLPLAGD 296

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L++ G+       V  A+ AL       GR       ++      +D ++  + 
Sbjct: 297 FQISNALVSAGLAISTGTPVAKALAALEKLKGAPGRLDLVGTTVSGA-PVYVDYAHKPDA 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  +VL+ + P   GR + V G     G         +   ++      V ++  +
Sbjct: 356 LE-----NVLASVRPFTTGRVMVVFG----CGGDRDRGKRPIMGEIATRLADVVIVTDDN 406

Query: 411 VLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +    +P +I                           L  GD ++V  K 
Sbjct: 407 PRS---EVPETIRAAILAAAPGAIEIGDRRKAIHEAVGMLHAGDTLIVAGKG 455


>gi|227503275|ref|ZP_03933324.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
 gi|227075778|gb|EEI13741.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49725]
          Length = 511

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 76/478 (15%), Positives = 144/478 (30%), Gaps = 44/478 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS S+     F A+ G    G  F+       A
Sbjct: 4   SLEKLAQLSHGRVIGDGT-VEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD---TKA 59

Query: 66  GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           G V+ +   +  +   +   P+  VDD+   L  +A           T++ ITG+ GKTT
Sbjct: 60  GAVLTDAPGLDHLRQANETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGITGTSGKTT 119

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T  +L   L     +   IG+    I              P          + G+    +
Sbjct: 120 TSYLLEAGLLQAGHSVGLIGTTGTRINRTPVPTSLTTPEAPRLQELFARMKEEGVTHVVM 179

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S               +A  + ++  HL     +EE  SAK+ +F G +      +  
Sbjct: 180 EVSSHALELGRVRGTNFAVAGFSNLSQDHLDFHPTMEEYFSAKSRLFLGEQAAQRAVICV 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + E L+      G     +   ++  D  +   +  +E +  +              
Sbjct: 240 DDEWGERLRGMVKDAGAPV--TTVATRTGDATISARQTATEATGAQEVDLNLDGTDYSFR 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      N+      + + TA  +     L+        G+  R    Q F  ++D ++ 
Sbjct: 298 LPLPGEFNIANAALALGMATAVGEDPQVFLTGVENVAVPGRMERIDRGQDFVAVVDYAHK 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +       L      G    +         G    S    +    +        ++
Sbjct: 358 PAAIAAVLDTLRLQLEGTSGRVGVV------VGAGGDRDSTKRPIMGEAAATRADLTVVT 411

Query: 408 G-----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     A++ A+            +    +       +      GD ++V  K 
Sbjct: 412 DDNPRTEDPAAIRAAVIEGARRAAPDADIREQGSRARAIDEVVDWAQPGDAIIVVGKG 469


>gi|22537538|ref|NP_688389.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae 2603V/R]
 gi|46577055|sp|Q8DYT2|MURE_STRA5 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|22534419|gb|AAN00262.1|AE014255_20 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 2603V/R]
          Length = 484

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 62/429 (14%), Positives = 127/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V  TD  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSETDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLIMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S+A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESKAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|261855066|ref|YP_003262349.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
 gi|261835535|gb|ACX95302.1| UDP-N-acetylmuramyl-tripeptide synthetase [Halothiobacillus
           neapolitanus c2]
          Length = 519

 Score = 91.5 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 77/487 (15%), Positives = 145/487 (29%), Gaps = 60/487 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++L A+       V       I+ DSR + P   FFA  G   +   FI  A+  GA 
Sbjct: 11  IGEILSALNLLVADNVGSVVARVITDDSREVVPGAVFFARSGIQPNIKPFISQALAAGAV 70

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKE 124
           LVV   D           V  V+ V   + ++   V A      TII ITG+ GKT+  +
Sbjct: 71  LVVTEADYADP------RVIRVEAVHSLVLQMVGHVCAVNFDDLTIIGITGTNGKTSVAQ 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------------------VPLTLARMPVDV 160
            +  ALS     +         +G                        +   +  +    
Sbjct: 125 FIAGALSRSGAPHTASIGMIGTLGAGMWSSGLENLQPTANTTPGLLETLRYAVDFIRQGA 184

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + + E+    L + R     +R  +AV T ++  HL     + E  +AK ++       
Sbjct: 185 RYVVMEVSSHALEQNRLQGLPIR--LAVFTNLSRDHLDYHGTMAEYFAAKTKL-FAWPGL 241

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D++  ++L     A      Y  G         +  +     + +     G  
Sbjct: 242 RAGIINFDEAQADVLFEALGATADCWAYGLGDPDWRVADCQHVRV----TSITALPNGID 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++V        +  +++      +I+ A        + +    +   +           T
Sbjct: 298 IQVRTPLGEARLQPSLVGLFNGANIMAALAAVLALGMPLETAIKALDQSTPPPGRMQMIT 357

Query: 341 LIDES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           L   +     Y   P ++   +  L        G+ I V G     G         L   
Sbjct: 358 LPSGARALVDYAHTPDALDQVLRALRDHR-DAAGKIICVFG----CGGDRDRGKRPLMAA 412

Query: 396 LSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +      + ++  +            ++  L                         GD 
Sbjct: 413 TAERLADQIVMTADNPRSEAPQAIIADMRGGLASPDTASVELDRRAAIESALMQAKAGDW 472

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 473 VLIAGKG 479


>gi|158334577|ref|YP_001515749.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
 gi|158304818|gb|ABW26435.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acaryochloris marina MBIC11017]
          Length = 499

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 78/483 (16%), Positives = 163/483 (33%), Gaps = 50/483 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI 57
           +     LL  +  H     P         + G++ +S ++ P   F  + G   DG  F 
Sbjct: 3   MVKLRTLLAELSTHLWETPPTDHPALDAEITGLTTNSWAVQPGYLFIGMPGTRVDGGSFW 62

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITG 115
             A++ GA   +V+ D V      +  V  + D+  A  ++A     +   K  ++ +TG
Sbjct: 63  KSAIEAGAAAALVS-DQVDRADVGTHCVLALKDMPRACAEVAATFYDQPSQKLKLVGMTG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------- 166
           + GKTTT  ++   L++ +   A  G+       P           F +           
Sbjct: 122 TNGKTTTTHLIEYLLTTAQAPTALFGTLYARW--PGHQVTAAHTTPFAVDLQQQLSDAVA 179

Query: 167 -------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                  + +S     +      +  +AV + +   HL     +E+  +AKA +F     
Sbjct: 180 AQCQFGVMEVSSHALAQKRVLGCQFTVAVFSNLTQDHLDYHQDMEDYFAAKALLFSPDYL 239

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD + + L  +   +G    +++     AD         +     ++     
Sbjct: 240 QGRAIINIDDVYGQRLVDQ---IGPNQCWTYSIEGPADLYTSGLSYETAGVKGQLHTPKG 296

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++E     +G     N+L  +G V  L   ++    AL+ F    GR ++   + +Q   
Sbjct: 297 TVEFFSSLVGQFNVSNLLAAVGAVLELGLTLEQITPALAQFPGVPGRMQQITYSADQDIS 356

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++D ++  +        ++L    P  +G+   V G     G         L   ++  
Sbjct: 357 VIVDYAHTPDSLE-----NLLKAARPFVKGQMACVFG----CGGDRDRTKRPLMGEIAAR 407

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
                 ++  +            +   +P  +                +    GD +++ 
Sbjct: 408 LSDQAIVTSDNPRTEDPQQILQDVLAGIPMEVKPIVEVDRRVAIQAAIAQAKPGDTILIA 467

Query: 450 -KS 451
            K 
Sbjct: 468 GKG 470


>gi|27904704|ref|NP_777830.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
 gi|29427601|sp|P59419|MURE_BUCBP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|27904101|gb|AAO26935.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Buchnera aphidicola str. Bp (Baizongia pistaciae)]
          Length = 508

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 72/482 (14%), Positives = 157/482 (32%), Gaps = 50/482 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD-GHDFILHAVQKG 64
               LL       I +     ++GI  DSR + P   F  +K  + +  +  ++HA++ G
Sbjct: 9   NLQQLLS----SWIKLSYSYTISGIQSDSRLVKPGYLFCVLKKKNINETNKHMIHAIKNG 64

Query: 65  AGLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARL-RSKATIIAITGSVG 118
           A +++ +T      G+L      +P+     +   L ++        +  T+I ITG+ G
Sbjct: 65  AKIILYDTKQKFKNGTLKKIINHVPIIYFFKLSKNLPQILKKYYHFENNFTLIGITGTNG 124

Query: 119 KTTTKEMLTIALS----------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           K+TT  +++   +                +         + ++          +  ++  
Sbjct: 125 KSTTTHIVSQWANLLNVKIGIMGTLGHGINNNLKKTDNTTESSANIHQFLYHMLKQNIKT 184

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              E  +S  G ++     +   IA++T I P HL     ++   +AK   F       T
Sbjct: 185 FAIE--ISSHGIVQHRIEQLPFKIAILTNITPEHLDYHRTMDNYINAKKAFFF-KYNINT 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN--ADFQLRKWKQCSEQSWMEVQLQGKS 280
           + +N DD   +    K +   + TI +  ++ N  +  +     +  ++          S
Sbjct: 242 LIINADDLIAKTWIKKLNHKNVITITTKDQNFNSISPKKWIHANKIIQKQNCTNIHFNSS 301

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                         N++  L  ++ L          + V    +    R           
Sbjct: 302 WGHGILNSTLIGHFNVINILLALATLLELNYPITDLVKVCKYIKTISGRMEHIHIVNKPK 361

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           +I + Y  N   +K  +S L +I    + +   + G     G             ++   
Sbjct: 362 VIID-YAHNTNGLKNLLSTLKEI--FNKKKIWCIFG----CGGDRDKTKRPYMGSIAEKM 414

Query: 401 ISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V L+  +         +  +         +      +    F  ++    D++VV  
Sbjct: 415 SDQVILTNDNPRNEHPLKIIKNILSGCKFKNKIRIIPNREHAIKFAVNNADKEDIIVVAG 474

Query: 450 KS 451
           K 
Sbjct: 475 KG 476


>gi|330955586|gb|EGH55846.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 122

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+GE ++  H ++    +   +S 
Sbjct: 1   DTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGEWAEQGHREVGAYAA-GKVSA 55

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           ++  G  +     A     H ++  +   L   + +       +++K S S     ++  
Sbjct: 56  LYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQNPDTTLLIKGSRSAAMEHVVAA 113

Query: 464 L 464
           L
Sbjct: 114 L 114


>gi|332976264|gb|EGK13126.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Desmospora sp. 8437]
          Length = 70

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             + L+ ++    I       + G+ +DSR + P + F A+KG   DGH FI  AV+KG
Sbjct: 1  MNLNTLIDSLAVAQITGNTDLEITGMEVDSRRVRPGDLFIALKGFTVDGHRFIRQAVEKG 60

Query: 65 AGLVVVNTD 73
          A  VV+  +
Sbjct: 61 ARAVVLEEE 69


>gi|293572002|ref|ZP_06683015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
 gi|291607926|gb|EFF37235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E980]
          Length = 501

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 154/471 (32%), Gaps = 53/471 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVKNGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+    + +    +  +    ++    + I   
Sbjct: 251 YFDLLKETADLFQIPTITYGRSEESNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A +        G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS         +    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLTADDPA 423

Query: 409 -FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + +  +I      VHY            +     D VV+  K 
Sbjct: 424 FEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTPQDSVVIAGKG 474


>gi|300023675|ref|YP_003756286.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525496|gb|ADJ23965.1| Mur ligase middle domain protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 437

 Score = 91.1 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 138/366 (37%), Gaps = 14/366 (3%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           +A   R R+ ATIIA+TGS  KTTT  +L+  L +           N +      L  + 
Sbjct: 27  IAKIKRERTSATIIAVTGSSAKTTTVALLSHIL-AGHSKVTSQFLCNGYGHAIDALLNLR 85

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  + + E G    G I     L++P +A+IT +A  H +    IE +A  K+ + E +
Sbjct: 86  SDTRYSVIEQGTKKPGHIPQAAKLLKPDLAIITLVAIEHYATLKSIEAVAQEKSALVEAV 145

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G + LN+DD     +  ++ A  I    +FG +                  + +   
Sbjct: 146 PDDGLVVLNFDDPNVRAMADRTRARSI----TFGTTGGDYLATNIRTDVCGLLLLTLTGG 201

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G ++++    +G H    +         L     T    ++ F P  GR   +       
Sbjct: 202 GHTIDLETQLLGAHNWLTIAAAATSALELGVPAQTVRARIASFAPIHGRMSPHTTPGGT- 260

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +I +   A   S+   +  L  I+   +     +LG + +    +   + D A   +
Sbjct: 261 --RIILDCAKAPYHSIFLPLETLRSITAPKKR---FILGQISDYAGNATKKYRD-AYAAA 314

Query: 398 LYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +     V   G      +   A   S        ++ L   ++ + V  +V++VKS+ + 
Sbjct: 315 VQVADEVCFVGPWAHKARAPQADIDSGKFRAFANIEALAAHLRDTAVKDEVILVKSAKNL 374

Query: 456 GFYRLI 461
              RL+
Sbjct: 375 HLERLL 380


>gi|91785298|ref|YP_560504.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
 gi|91689252|gb|ABE32452.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia xenovorans LB400]
          Length = 518

 Score = 91.1 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 79/486 (16%), Positives = 146/486 (30%), Gaps = 58/486 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQK 63
             D L  +  H            +  D+RS+A  +AFFA      DG D   FI  A+++
Sbjct: 14  IADALTWLHAHVQPGA------HLHADTRSLAAGDAFFAYA---VDGADNRPFIEGAIER 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
           GA  V+V  +  +   + S  +  V  +      +A             + ITG+ GKT+
Sbjct: 65  GAAAVLVQPEGFSGAINPS-NMLAVPALNELAGSIASGWYNDPSDSMLTVGITGTNGKTS 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IF 165
             + ++ AL+++    A IG+     G+P  L                            
Sbjct: 124 CSQWISAALTALGTRCAIIGTLGT--GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     IAV T +   HL      E   +AKA +F   E    +  
Sbjct: 182 AMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHQTFEAYEAAKARLFAWPELRAAVIN 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D +   LL +                       +        +               
Sbjct: 242 RDDAAGRRLLASTQGHARTIAYGLDSGQGALQDAPQADALLLASNVRATATGTAFHLSTS 301

Query: 286 HGIGYHMAQNMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    L    + ++L             + A+  L+   P  GR +R    L  
Sbjct: 302 DWGDAEVEVQTLGAFNVSNLLGVLGALLAADVPFEAALAELAQLEPVNGRMQRLGGRLQN 361

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               ++ + Y   P +++  +  L  +     G  I + G     G    +    L   +
Sbjct: 362 DEPLVVID-YAHTPDALEKTLEALRPMVTARGGELICMFG----CGGDRDATKRPLMGAI 416

Query: 397 SLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++  +  +         +   +  +      E      L    S    DV+
Sbjct: 417 AEKIADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVI 476

Query: 448 VV--KS 451
           V+  K 
Sbjct: 477 VLAGKG 482


>gi|295398699|ref|ZP_06808721.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
 gi|294973052|gb|EFG48857.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Aerococcus viridans ATCC 11563]
          Length = 514

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 148/454 (32%), Gaps = 48/454 (10%)

Query: 12  QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
            A       +  +  +N I+ DSR++     F   KG ++    ++  AV +GA   +  
Sbjct: 19  SATTITQENVADEVIINRITFDSRAVTANTLFVC-KGLNFKA-SYLKDAVDRGAVAYLSE 76

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG--------SVGKTTTK 123
            D  A      IP   V+D+  A+ +LA     +S    +AI+G        +      +
Sbjct: 77  QDYAA-----DIPGIIVEDIRLAMAQLANFFY-QSPWQDVAISGITGTKGKTTTAGFVNQ 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM-------------- 169
            +   +    +     + S  N+ G+  T + +       ++E+                
Sbjct: 131 ILTLDSQEKGQPLPGFVSSTFNYDGLEKTPSTLTTPEAMDLYEMLATMRDNGVKRATMEV 190

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           V+  +     I+P H+S           ++++         +     D
Sbjct: 191 SSQALKYHRADDVKMEVVAFLNISPDHISPVEHPTFADYFQSKLRIFDHGKVAVINEDTD 250

Query: 230 SFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            + E+LKA   A  I+ I +   K+  AD+   +      +    V+ QG+ + +  + +
Sbjct: 251 HYEEILKAAEDAENIQRIVTVSRKNPAADYFADELAFSETKQTFVVKNQGEEIPMALNVL 310

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G+    N L+   I      +  T  KA            R     +          +  
Sbjct: 311 GHFNINNALVAAAIARENDVEWATIQKA----LGDAKTDGRMEIYRSTDNQLTFVVDFAH 366

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S +   S + +++P  +     V G     G  +++   D+   ++  N + ++L+ 
Sbjct: 367 NKISFEELFSSVKEMAPDND--IRIVFGSA---GGKAENRRADMGR-VAGLNTNEIYLTS 420

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                                ++     +     
Sbjct: 421 DDPNF-------EDSYKIMAEIEEAINEVNPDAK 447


>gi|311895543|dbj|BAJ27951.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Kitasatospora setae
           KM-6054]
          Length = 514

 Score = 90.7 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 153/477 (32%), Gaps = 48/477 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +  + +    +  V    V G++ DSR++ P + + A  G ++ G  F   A   GA 
Sbjct: 22  LAEAARLLG---LAGVEGPEVTGVTHDSRAVRPGDVYVAFPGANHHGAAFAAGAAAAGAV 78

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKE 124
            V+ +        +  +P+  VD    A+  LA A          +I +TG+ GKTTT  
Sbjct: 79  AVLTDAAGAELAAAAGVPLLVVDSPREAMGPLAAAVYGAPSERMLMIGLTGTNGKTTTSY 138

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L    +    IG+    +G     +    P   +       M   G    +  + 
Sbjct: 139 LVEGGLRGAGRLPGVIGTVEMRVGEERIKSERTTPEATELHAVLAVMREAGADAVVMEVS 198

Query: 183 RP------------HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          +A+   + P HL     +E+   AKA +F+   K+     N DDS
Sbjct: 199 SHALVYGRTDGVVYDVALFNNLTPEHLDFHPDMEDYYRAKARLFQ-QGKSRRGVANRDDS 257

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L  +  A    T +S      AD++    +     S   V             +  
Sbjct: 258 YGRRLAGE--ARIPMTTFSAAGDPAADWRAVDVRPGPSGSTFRVLGPNGEQAD--AAVPL 313

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-SYNAN 349
               N+   LG ++ L         A++      G   R         +  + + ++  +
Sbjct: 314 PGLFNVSNALGAITALVVAGVELADAVAGVAAVPGVPGRLEEVDAGQDYVAVVDYAHKPD 373

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             S      VL+ +    +GR   V+G     G+        +  + +    + V  S  
Sbjct: 374 ALSS-----VLASLREVTKGRLHVVVG---CGGDRDPYKRGPMGAIAARLADTAVLTSDN 425

Query: 409 ---FHVLAL-------KDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV--KS 451
                 LA+          +P                     S    GD V+V  K 
Sbjct: 426 PRSEDALAILATMLSGAAEVPEQERGEVLAVPDRGEAIALAVSRAHSGDTVLVAGKG 482


>gi|326388913|ref|ZP_08210495.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206513|gb|EGD57348.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium nitrogenifigens DSM 19370]
          Length = 485

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 80/452 (17%), Positives = 141/452 (31%), Gaps = 42/452 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             V G +ID R +AP   F A  G   +G DFI  A+        V              
Sbjct: 22  IDVTGFAIDHRKVAPGTVFGAFPGARVNGEDFIPAAI----AAGAVAVVARPEAVVEGAV 77

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
                +      ++A         T++A+TG+ GKT+T EM            A IG+  
Sbjct: 78  HIPDAEPRRLFARIAAGFFTPVPETVVAVTGTNGKTSTVEMTRQIWRMAGHRSASIGTLG 137

Query: 145 NHIGVPLTLARMPVDVDFGIFEL----------------GMSHLGEIRFLTHLVRPHIAV 188
                        +     +  L                  S  G  ++ +         
Sbjct: 138 V--TTADESISTGMTTPDIVTFLANVSGLAREGITHLAYEASSHGLDQYRSEGPVVAAGA 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   +AK  +F+ +   G   + + D  +              + 
Sbjct: 196 FTNLSRDHLDYHPSMEAYFAAKMRLFDEVVGEGGAAVVWADDEWSDRAIDHARRRALRVL 255

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           + G+ +    +L   K       +++  +G++ ++    IG + A N L++ G+V     
Sbjct: 256 TVGE-RGETIRLVGRKPTLLGQQLDLVHEGQARKITLPLIGAYQAANALVSAGLVLATGG 314

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      AL    P  GR          G    +D ++  +  +        + + PH E
Sbjct: 315 DPTQTFDALGRLQPVRGR-LERAAITRTGAPVYVDYAHTPDAITA-----ACAALRPHVE 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIH 423
           GR I V G     G              +      V ++     G    A++ A+     
Sbjct: 369 GRLIVVFGA----GGDRDPGKRGPMGAAACAGADLVIVTDDNPRGEDPAAIRAAVLAGCT 424

Query: 424 VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
               E            +    GD+V+V  K 
Sbjct: 425 GVARETGDRRAAIAEAIAQAGKGDIVLVAGKG 456


>gi|256786062|ref|ZP_05524493.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Streptomyces
           lividans TK24]
 gi|289769958|ref|ZP_06529336.1| predicted protein [Streptomyces lividans TK24]
 gi|289700157|gb|EFD67586.1| predicted protein [Streptomyces lividans TK24]
          Length = 120

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 9/103 (8%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            GRRIAVLG+M E+G+ S   H ++  + S Y +  V   G     L   L  +      
Sbjct: 13  GGRRIAVLGEMLELGDESVEAHREVGRMASEYGVDLVVAVG---GDLAKQLALAAGAAGV 69

Query: 428 ETMD------GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +           ++ S L   DVV+VK+S     +++   L
Sbjct: 70  PDIALVGDNITAAAYLDSILRPDDVVLVKASRGGQLWQIAQAL 112


>gi|288905963|ref|YP_003431185.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Streptococcus gallolyticus UCN34]
 gi|288732689|emb|CBI14261.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus gallolyticus UCN34]
          Length = 483

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 66/447 (14%), Positives = 131/447 (29%), Gaps = 39/447 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+           IIA TG+ GKTT        L    +     
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                  G     +++       +F++  + +        +     A +          +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEVSSQAYLVE------RVY 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
               ++ +      + +                LL A S A+ +     +          
Sbjct: 199 GLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDYFNIVAQQVAN 258

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                  + S   ++        V      H+ I    + N    +           +  
Sbjct: 259 TPHDFYGKGSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLACLRLGTSLA 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                       G+        G    +D ++N +         +LS +  H +G    +
Sbjct: 319 DIQKGIAQTSVPGRMEVITQTNGAKVFVDYAHNGDSLE-----KLLSVVEEHQKGDLHLI 373

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYS 427
           LG     GE  ++   D A V++ +   HV L+          A+ + +   +   +   
Sbjct: 374 LGATGNKGESRRA---DFARVINAHPNLHVILTADDPNYEDPQAIAEEIASQVTRPLDIQ 430

Query: 428 ETMDGLFLFIQSSLVDG-DVVVV--KS 451
              +       +   +  D V++  K 
Sbjct: 431 VDREKAISQAMARTNNETDAVIIAGKG 457


>gi|294812137|ref|ZP_06770780.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
 gi|326440707|ref|ZP_08215441.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptomyces clavuligerus ATCC 27064]
 gi|294324736|gb|EFG06379.1| Putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptomyces clavuligerus ATCC
           27064]
          Length = 561

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 78/219 (35%), Gaps = 17/219 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  +L   +         +  V GI+ DSR++ P + + A+ G    G DF   A   GA
Sbjct: 61  SLGELAARLGVSDPAAD-EVTVTGITHDSRAVRPGDVYAALPGARLHGADFAAQAAGLGA 119

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             V+ +        +  +PV   ++    + +LA             I ITG+ GKTTT 
Sbjct: 120 AAVLTDPAGADRAAATGLPVLVTENPRARMGELAAEVYGHPGEGLLQIGITGTSGKTTTV 179

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHL 181
            ++   L +  +    +G+    IG     +    P   D       M   G       +
Sbjct: 180 YLMEGGLRAAGRATGLVGTVETRIGEERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 239

Query: 182 VR------------PHIAVITTIAPAHLSNFSGIEEIAS 208
                           +AV   ++P H+   SG+E+   
Sbjct: 240 SSHALVLGRVDGCVFDVAVFNNLSPEHMEFHSGMEDYFQ 278


>gi|148273045|ref|YP_001222606.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
 gi|147830975|emb|CAN01920.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Clavibacter michiganensis subsp. michiganensis
           NCPPB 382]
          Length = 514

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 146/452 (32%), Gaps = 37/452 (8%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  + P + +  ++G    G  F   A   GA  V+ + D +A      +PV  
Sbjct: 40  TGVTLSSGDVQPGDLYVGLRGVRVHGARFAADAAASGAVAVLTDPDGLADAQGSGLPVIL 99

Query: 88  VDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D   AL  +A        + AT+  +TG+ GKT+   +L   L  +        +   
Sbjct: 100 TPDPRAALGDIAAWVHRSAENPATLYGVTGTNGKTSVVYLLDGLLRQLGVVTGLTSTAER 159

Query: 146 HIGVPLTLARM--------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            IG     +R+                + +     + +S     R     +   IA    
Sbjct: 160 RIGEESITSRLTTPEASELHALLARMREAEVRAVTIEVSAQALTRHRVDGLVFDIAAFIN 219

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL +++  EE   AKA  F+  ++     ++ D  + + +   S           G
Sbjct: 220 LSHDHLDDYADFEEYFDAKAAFFD-PDRARRGVVSLDTEWGQRIVDGSRIPMTTIASKPG 278

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
              +    + +    S    +E       +       G+ MA N  + + ++     D+D
Sbjct: 279 VDADWTVTVLEQTPDSTGFRLEGPDNRVLVS-RVPVPGWFMAANAGLAIVMLVESGYDLD 337

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                L      +         ++     L    Y   P +       L  + P   G+ 
Sbjct: 338 AVAHVLDRDGGIQAYIPGRAERVSGETGPLFFVDYGHTPDAF---EQTLQALRPFTPGKL 394

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI---- 422
           + V G     G+   +   ++  + +      V ++          +++ +L        
Sbjct: 395 VMVFGA---DGDRDTTKRAEMGAIAARL-ADVVVITDYHPRYEDPASIRASLIAGAMAAV 450

Query: 423 ---HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               +H             S + +GD ++V  
Sbjct: 451 PDREIHEVPDPATAIRTAVSLVGEGDTILVAG 482


>gi|118590897|ref|ZP_01548297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
 gi|118436419|gb|EAV43060.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Stappia aggregata IAM 12614]
          Length = 489

 Score = 90.7 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 83/475 (17%), Positives = 138/475 (29%), Gaps = 58/475 (12%)

Query: 13  AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF--------------IL 58
           A             + G++ DSR + P   F A KG   DG  F                
Sbjct: 7   AAGLTLPEAAGARKITGLTADSRKVQPGFLFAAFKGVSVDGTKFAPDAAAAGAIAILCAE 66

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A            ++ A +      V  V+       K+A         TI+A+TG+ G
Sbjct: 67  DAAA----------EVRALVPETVAVVSAVE-PRQVFAKMAARFYGAQPDTIVAVTGTAG 115

Query: 119 KTTTKEMLTIALSSIKKTYA-------CIGSYNNHIGVPLTLARMPVDV-----DFGIFE 166
           KT+          +     A             ++ G+                D G+  
Sbjct: 116 KTSVAHFARQIFQAAGHPAASLGTLGLIKPDGESYGGLTTPDPVALHKQLAELEDEGVNH 175

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             L  S  G  ++    VR   A  T +   H+     IE   +AK  +F  L   G   
Sbjct: 176 AALEASSHGLDQYRLDGVRLTAAAFTNLGRDHMDYHPTIEHYLNAKLRLFAELLPAGGTV 235

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +      +              +++ G+    +  L   +       + +Q      +V 
Sbjct: 236 VLDPGEKYADRVMAVAQERGLPVFTVGE-TGRNLTLTGLRPVGAGQELTIQSVRGEYKVT 294

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG     N L+  G+      D  TA++AL       GR      A       LI  
Sbjct: 295 LPLIGRFQVSNALIAAGLAISAGIDTGTALRALENLKGAPGR---LELAGRTPAGGLIFV 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P ++    + L  + P   G+   V+G     G        +L   ++      V
Sbjct: 352 DYAHKPDALD---NALVALKPFARGKLSVVIGA----GGDRDPGKRELMGEVAARRADLV 404

Query: 405 WLSG-----FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++          A++ A+                       L DGD++ V  K 
Sbjct: 405 IVTDDNPRSEDPAAIRKAVMSGAPGAIEIGDRYEAIAEGVRRLKDGDILCVAGKG 459


>gi|329940947|ref|ZP_08290227.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
 gi|329300241|gb|EGG44139.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces griseoaurantiacus M045]
          Length = 506

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 85/477 (17%), Positives = 146/477 (30%), Gaps = 48/477 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +L     G      P+    V GI+ DSR++ P + + A+ G    G DF+  A   G
Sbjct: 17  LAELA----GQLGVAAPETEAGVTGITHDSRAVRPGDLYAALPGARLHGADFVTQAAGLG 72

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+ +        +  +PV   ++    + +LA     R    +  I ITG+ GKTTT
Sbjct: 73  AAAVLTDPSGAERAAATGLPVLVAENPRAGMGELAATIYGRPGRELLGIGITGTSGKTTT 132

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-------------FELGM 169
             ++   L + K T              +   R   +                    + +
Sbjct: 133 AYLVEGGLRTAKSTGLIGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEV 192

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +          IAV T ++P H+   SG+E+   AKA++      T         
Sbjct: 193 SSHALVLGRVDGCVFDIAVFTNLSPEHMEFHSGMEDYFQAKAQL-----FTPARSRLGVV 247

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +  +    +  A     + ++    + D   R              + G     V     
Sbjct: 248 NTDDEYGRRLAAQATVPVVTYSAEGHPDADWRAEDVEVGPLDSTFTVLGPDGVRVTARSP 307

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N+  TL  +  L A       A        G   R         +  + +  +  
Sbjct: 308 LAGPFNVANTLAAIVALAAAGLDPQAAADGIAAVPGVPGRLERVDAGQPYFAVVDYAH-- 365

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                A  SVL  +    +GR   VLG     G+   +  + +    +    + V  S  
Sbjct: 366 --KTDAVESVLKALRKVTKGRLHIVLG---CGGDRDTTKRMPMGAAAARLADTAVLTSDN 420

Query: 409 ---FHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 LA+   + +            V   E          +    GD V+V  K 
Sbjct: 421 PRSEDPLAILATMLQGAASVPAHERGEVQVFEDRAAAIAAAVARARPGDTVLVAGKG 477


>gi|309810142|ref|ZP_07703988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|312870943|ref|ZP_07731048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|312872249|ref|ZP_07732322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|325911604|ref|ZP_08174012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325912949|ref|ZP_08175323.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
 gi|308169641|gb|EFO71688.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners SPIN 2503V10-D]
 gi|311092333|gb|EFQ50704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2062A-h1]
 gi|311093633|gb|EFQ51972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 3008A-a]
 gi|325476590|gb|EGC79748.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 143-D]
 gi|325477763|gb|EGC80901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners UPII 60-B]
          Length = 519

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 90  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 150 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 210 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTANHGTVIVD-YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 385 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 437

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 438 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDVVLICG 487


>gi|94501901|ref|ZP_01308411.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
 gi|94425954|gb|EAT10952.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Oceanobacter sp. RED65]
          Length = 490

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 154/472 (32%), Gaps = 54/472 (11%)

Query: 10  LLQAIQ----GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +++ +        +G      +N I  DSR +   +A   +     D   +I  A++K A
Sbjct: 8   IVKWLGKQCPAELLGQAQ--TLNRIVFDSRDVEDGDALIVLPSVAGDEAAYIEQALEKRA 65

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
            LV+   +  A           V DV+     +             +I +TG+ GK++  
Sbjct: 66  VLVIGEIEYSAHN------YCRVSDVMTFAASVLNHELGSPSQHMDVIGVTGTNGKSSIV 119

Query: 124 EMLTIALSSIKK------------TYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMS 170
             +   L+ ++                   +    + +P     +  V  D     + +S
Sbjct: 120 FYVAQLLTELRHSCAVMGTLGYGFWNDLKPTGMTTLPLPRLHQALADVKKDCKAIAMEVS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     V  + A+ T ++  HL     ++    AK  +F+       +    DD 
Sbjct: 180 SHGLHQKRLSGVAFNGAIFTNLSRDHLDYHGTMDAYFDAKRLLFKEPGLQWAVINQDDDY 239

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             +LL          + YS+G  + +D      +       + ++  G+  EV    +G 
Sbjct: 240 GKKLLSE----PVSYSSYSYGTDEKSDLHFCITRTTDTGQQLALRFHGQEQEVFLPLLGE 295

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N   ++  V  +  D  +A KA++   P  GR +    + +     L+D ++  + 
Sbjct: 296 FNAYNAAASVLSVIAMGFDFSSACKAVTALRPVSGRMELI-DSNDSQPNVLVDYAHTPDA 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   VL     H +G  + ++G     G         L    ++     V L+  +
Sbjct: 355 VE-----QVLKSARKHCKGNLVCLVG----CGGDRDRGKRPLMAQAAINFADSVLLTSDN 405

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L + +                 +    D++V+  K 
Sbjct: 406 PRSESPEQILADMVQGLKKEVPSEL--DRKQAIQSAILNAKSDDLIVIVGKG 455


>gi|309803501|ref|ZP_07697594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
 gi|308164385|gb|EFO66639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 11V1-d]
          Length = 519

 Score = 90.3 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 90  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 150 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 210 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTAHHGTVIVD-YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 385 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 437

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 438 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKEAKDDDVVLICG 487


>gi|222152603|ref|YP_002561778.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus uberis 0140J]
 gi|222113414|emb|CAR41085.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus uberis 0140J]
          Length = 482

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 68/458 (14%), Positives = 140/458 (30%), Gaps = 38/458 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +     FFA KG  +   D++  A+ +G    V   D       LSIP  
Sbjct: 35  FQKLSYDSREVDADTLFFA-KGAQFK-VDYLKKAIDQGLQAYVSEIDY-----QLSIPAI 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+      + K  ++A TG+ GKTT        L    K         
Sbjct: 88  IVSDIKKAMSIIAMTFYGNPQEKLKLLAFTGTKGKTTAAYFAYHILKQNYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F++  S +        +     A +          +    
Sbjct: 148 TLDGQTFFKSQLTTPESLDLFKMMASCVSNGMTHIIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           ++        + +                LL   S A+ I +              +   
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFNILAEQVADKDHV 261

Query: 265 QCSEQS------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              +QS                    H+ I      N    +           + +    
Sbjct: 262 FYGDQSENALTESQAFAFSVNGQIAGHYDIQLIGRFNQENAIAAGLACQKLGASHLDIHE 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+    +   G    +D ++N +         ++S +  H +G    ++G  
Sbjct: 322 GIAQTTVPGRMEVVSHPNGAKVFVDYAHNGDSLE-----KLVSVVETHQKGLISLIIGST 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHVH---YSETM 430
              GE  ++   D   V++ +   +V L+           +   +   ++ H     +  
Sbjct: 377 GNKGESRRA---DFGRVINNHPNLNVILTADDPNFEDPETICQEIASHVNRHVSIIVDRQ 433

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
           D +   ++     GD +++        Y+++N   EE+
Sbjct: 434 DAIIEGLKYCHTSGDALIIAG-KGADAYQIVNGKKEEY 470


>gi|77408653|ref|ZP_00785387.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
 gi|77172771|gb|EAO75906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae COH1]
          Length = 483

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 64/441 (14%), Positives = 130/441 (29%), Gaps = 60/441 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSEIDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 G     + +                   +   + E+  S    +    + +   
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEV--SSQAYLTKRVYGLTFD 203

Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           + V   I+P H+        E+    K  + E              +  +          
Sbjct: 204 VGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVE------ 257

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                      +      +      Q++              + IG    +N L      
Sbjct: 258 -------YIPHDFYGDYSENVITESQAFSFHVKGKLENTYNINLIGKFNQENALAAGLAC 310

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   ++     ++            +          +D ++N +         +L+ +
Sbjct: 311 LRLGVSIEDIKNGIAQTTVPGRMEVLTQTNG---AKIFVDYAHNGDS-----LKKLLAVV 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDAL 418
             H +G  I VLG     G+  +    D  +V++ +    V L+         L +   +
Sbjct: 363 EEHQKGDIILVLGAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEI 419

Query: 419 PRSIH--VHYSETMDGLFLFI 437
              I+  V      +      
Sbjct: 420 ASHINRPVTIIIDREEAIANA 440


>gi|50913697|ref|YP_059669.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|139474340|ref|YP_001129056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes str. Manfredo]
 gi|68052497|sp|Q5XDM7|MURE_STRP6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224788|sp|A2RG75|MURE_STRPG RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|50902771|gb|AAT86486.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10394]
 gi|134272587|emb|CAM30854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pyogenes str. Manfredo]
          Length = 481

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 134/464 (28%), Gaps = 41/464 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L A   H            +S DSR +  +  FFA KG  +   D++  A+  G 
Sbjct: 16  NFREVLDADGYHYHYQG--LSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
            L +   D       L IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT  
Sbjct: 72  QLYISEVDY-----ELGIPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L    K            G     +++       +F +    +        +  
Sbjct: 127 YFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEV 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-- 241
              A +          +    ++        + +                LL   S A  
Sbjct: 187 SSQAYLVD------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVV 240

Query: 242 -LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNML 297
                  +SF   + AD +   +   S+      Q      +    G          N  
Sbjct: 241 INSGMDHFSFLADQVADQEHMFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQE 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +           +              G+     +       +D ++N +        
Sbjct: 301 NAMAAGLACLRLGASLADIQKGIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE----- 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            +LS +  H  G+ + +LG     GE  ++   D   V+  +    V L+          
Sbjct: 356 KLLSVVEEHQTGKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPE 412

Query: 413 ALKDALPRSI--HVHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
            +   +   I   V      +       S      D V++  K 
Sbjct: 413 DISQEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKG 456


>gi|94993717|ref|YP_601815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10750]
 gi|166224787|sp|Q1J890|MURE_STRPF RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|94547225|gb|ABF37271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10750]
          Length = 481

 Score = 90.3 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 129/443 (29%), Gaps = 39/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F +    +        +     A +          +    
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQLR 261
           ++        + +                LL   S A         +SF   + AD +  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFSFLADQVADQEHV 261

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNMLMTLGIVSILTADVDTAIKALS 318
            +   S+      Q      +    G          N    +           +      
Sbjct: 262 FYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+     +       +D ++N +         +LS +  H  G+ + +LG  
Sbjct: 322 GIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGKLMLILGAP 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMD 431
              GE  ++   D   V+  +    V L+           +   +   I   V      +
Sbjct: 377 GNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISQEIASHIARPVEIISDRE 433

Query: 432 GLFLFIQSSLVD-GDVVVV--KS 451
                  S   +  D V++  K 
Sbjct: 434 QAIQKAMSLCQEAKDAVIIAGKG 456


>gi|218886062|ref|YP_002435383.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757016|gb|ACL07915.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 494

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/469 (13%), Positives = 129/469 (27%), Gaps = 68/469 (14%)

Query: 30  ISIDSRSIAPQEAFFAIK------GPHYDGHDFI----------LHAVQKGAGLVVVNTD 73
           I  DSR +   + F A+       G   DG DFI          +  +       + +  
Sbjct: 20  IRTDSRKVGRGDVFVAVPGVAANGGAGVDGADFIVKAWAAGAGAVVCLPARVEAALADAP 79

Query: 74  MVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                      V   DD   A+  L  A          ++A+TG+ GKTT   +L    S
Sbjct: 80  -------EGAVVAAHDDPRVAIGLLGQARYGTDALPFPVVAVTGTNGKTTITYLLDHVFS 132

Query: 132 SIKK---------TYACIGSYNNHIGVPLTLARM-----PVDVDFGIFELGMSHLGEIRF 177
           ++ +               + +  +  P  +          D    +  + +S     + 
Sbjct: 133 ALGRRAGVLGTVSYRWPGFAMDAPLTTPDCIETHAMLGRMRDAGVDVALMEVSSHALDQR 192

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEE-IASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               +R   A++T +   HL     +E   A+      E  +      +N DD++   L 
Sbjct: 193 RVAGIRFAGAILTNLTQDHLDYHGDMEHYYAAKARLFTELPDADKACAVNADDAWGRRLL 252

Query: 237 AKSHAL---GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +       G+    +    +    ++ +         M  + +   +     G      
Sbjct: 253 GEVPHAIGFGLDAGNAVSGRRFLHGEMVRNATSGLTLRMTYEGRQWELSSHLVGAHNASN 312

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
              +  + +   L      ++   +    +  R    R       +    ++      + 
Sbjct: 313 LLAVQAVCLGMGLAPQDFASLAGFTGVPGRLERIVNPRGLDIFVDYAHTPDALENVLRA- 371

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                    +   G  R + V G     G         L       +     L+  +   
Sbjct: 372 ---------LRAVGFSRIVTVFG----CGGNRDRTKRPLMGQAVARHADVAVLTSDNPRH 418

Query: 414 ------LKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + D    L  +  V              + L  GDV++V  K 
Sbjct: 419 EDPEAIMADVLPGLAGARKVVSDADRARAIGKALALLQPGDVLLVAGKG 467


>gi|299139512|ref|ZP_07032686.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
 gi|298598440|gb|EFI54604.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX8]
          Length = 450

 Score = 90.3 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 126/373 (33%), Gaps = 40/373 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGI 164
            +  ++ ITGS GKTTT  ++     +  +          +IG P+T        + + +
Sbjct: 105 LQGEVVGITGSNGKTTTTTLMGEIFKAAGR----PTLVGGNIGKPVTELVGESTPEAWSV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L  +       RP IA++  I P HL      E  A+AKA I E       + 
Sbjct: 161 LEVSSFQLETVE----SFRPRIAMVLNITPDHLDRHGNFENYAAAKARITEFQTAEDFLI 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN +D   +++ AK      +  +   + +         +          + +       
Sbjct: 217 LNAEDKPTQMVAAK---TKAQIYWFSPRRQVKQGAFVHGETIFFTPSEGAKPEPVMPVAE 273

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +    +     +T   A++ F   E R                ++
Sbjct: 274 IPLAGAHNVENVLAAVCAARLAGVASETIRAAVAAFKAVEHRL---EFVREHNGVRYYND 330

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A+   +       GR   +LG     G+   S +  +  +L    +  V
Sbjct: 331 SKATNVDATVKAVEAFA-------GRIYLILG-----GKDKDSDYAVMGPLLRER-VKMV 377

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
              G     ++  L   + +  +ETMD        + V GD V++    +S         
Sbjct: 378 ITIGSAAEKIEHQLAGVVKIERAETMDRAVALAHEAAVAGDTVLLAPACASFDQFQNYEH 437

Query: 453 NSCGFYRLINLLL 465
               F  L+  L 
Sbjct: 438 RGHAFKSLVLALE 450


>gi|332687175|ref|YP_004456949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
 gi|332371184|dbj|BAK22140.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Melissococcus plutonius ATCC 35311]
          Length = 510

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 76/467 (16%), Positives = 144/467 (30%), Gaps = 50/467 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                  + FV+ +S +S+ I     FF  KG ++   D+++ AVQ G  + +       
Sbjct: 30  RLPNAFNKQFVDHLSYNSQDITKNTLFFC-KGLNFK-KDYLVDAVQNGLSIYISEQPYDV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V DV  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PADLG----IIVSDVKKAMAILSMAFYNYPQNKLKVIGFTGTKGKTTAAYFAKSILTNAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +  ++   + E+  S      
Sbjct: 144 KGKTAMLSTMCSTLDGKTFFKSKLTTPESLDLYRMMNEAVQNNMTHFVMEV--SSQAYKI 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K +I    ++             + 
Sbjct: 202 DRVYQLFYDVGIFLNITPDHISPIEHPTFDDYFYCKRQIIAHSKQIILNRETDYFQLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                +   I          +  +Q +     +     E      S +   H  G     
Sbjct: 262 TADYFNVPTIVYGNQPTTEVDYWYQKKSQDSLAFTIVAEKDFLFISGDYQLHLAGDFNKS 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +   S+L A+       ++                N+    +  + Y  N  S+ 
Sbjct: 322 NALSAVIASSLLGANKKDCQTGINETIVPGR----MELLKNKNNAQVYID-YAHNYDSLY 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----SGFH 410
             +S + Q   H  GR I V+G     G   +    D   VLS +    +      +   
Sbjct: 377 HLLSFVKQ--DHKNGRVIVVIGSTGNKGISRRK---DFGAVLSKFADIAILTMDDPADED 431

Query: 411 VLALKDALPRSIHVHYSE----TMDGLFLFIQSSLVDGDVVVV--KS 451
             A+   +  SI  + +                     D VV+  K 
Sbjct: 432 PKAICQEIANSITTNVTSFITVDRKKAIQQALEMSQPADAVVLAGKG 478


>gi|313899192|ref|ZP_07832712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
 gi|312956015|gb|EFR37663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Clostridium sp. HGF2]
          Length = 468

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 79/479 (16%), Positives = 138/479 (28%), Gaps = 57/479 (11%)

Query: 16  GHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
                      +  GIS D+R +     F   KG  YDG  F+  A+ KGA  V+ +  +
Sbjct: 3   ALLHIDCEDARILQGISDDTRDVKKDWLFVCRKGSLYDGAAFLQEALDKGAV-VLCDQML 61

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
                     V+    V      L          +  +I ITG+ GKT+   +++  L  
Sbjct: 62  PMQH------VYYTPHVERITQALLELYYGDLCTRLHVIGITGTNGKTSVASIISQLLKM 115

Query: 133 IKK------------TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
                              I  +N   G            D  I    + +S     +  
Sbjct: 116 EGCRVLQIGTGSVRYPDEVIEIHNTTPGCFQLANYFRRAHDEKITHVVMEVSSHAIDQNR 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +     V T I   HL            K ++   L+  GTI  N D S+ + L   
Sbjct: 176 ISFLHFDDIVYTNITQDHLDYHLTRVHYRYTKFKLRRYLKPQGTIVYNSDLSYMQELVNL 235

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    I              +L            +   +   M  V          N+  
Sbjct: 236 AQHACISIGMQAAHFPLHHVELSDHDLSFRLQGYDFHARLLGMVNV---------YNLAE 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +V  L    +   K      P  GR +         +      +             
Sbjct: 287 AIVVVHRLGFSYERLRKDCEKLLPVSGRMEVMEVGGFTIWIDYAHTAAA--------VEE 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GFHVLAL 414
           +L   +   +GR + +LG     GE  ++    +A + + Y+   V+ S    G  V  +
Sbjct: 339 LLVFANSVKKGRILTILG---CGGERDRTKRPAMAAIAAKYSDLAVFTSDNPRGESVDRI 395

Query: 415 KDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KSSNSCGFYRLINLLLEEFP 469
              +      +    E              + D++++  K S        I    +E+P
Sbjct: 396 LADMKCESFPNAAVFENRYFAIKHTIKVAQNSDIIIIAGKGS-----EETITAFGQEYP 449


>gi|192292419|ref|YP_001993024.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286168|gb|ACF02549.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodopseudomonas
           palustris TIE-1]
          Length = 485

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 73/444 (16%), Positives = 139/444 (31%), Gaps = 40/444 (9%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR++ P + FFA+ G   DG  F+  AV  GA  V          G L++P   + +  
Sbjct: 28  DSRAVKPGDLFFALAGAKTDGARFVAAAVATGAVAVAGEHR---PEGDLAVPFVQLSNAR 84

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL + A     R    I A+TG+ GKT+           +    A IG+          
Sbjct: 85  LALAQAAARFYPRQPEVIAAVTGTSGKTSVAAFTRQIWQRLGHASASIGTIGLVTPTRSV 144

Query: 153 LARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +       +                L  S  G  +F    VR      T ++  H+ 
Sbjct: 145 YGSLTTPDPIALHRSLDEIAREGITHLALEASSHGLDQFRLDGVRVAAGGFTNLSRDHMD 204

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +    +AK  +F  L + G   +   D        ++       + + G++ +   
Sbjct: 205 YHPTVAHYLNAKLRLFRNLVQDGGAAVISADHDCSAQVIEAAGARGLRLITIGRNGDPGA 264

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
            ++      E    ++ ++                Q     +    ++    D A    +
Sbjct: 265 GIKLIDATVEGFAQQLTVEHAGKRHRIKLPLVGEFQIENALVAAGLVIGTGGDAAASFAA 324

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           + H +   G+        G    +D ++  +  +       L  + P+ + + + V G  
Sbjct: 325 LEHLEGAPGRLDLVGARNGAPVFVDYAHKPDALA-----KTLQALRPYAKRKLVVVFGA- 378

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429
              G    S    L   ++  N   V ++  +           A+  A P +  +     
Sbjct: 379 ---GGDRDSGKRPLMGAIAAENADVVIITDDNPRSEDPATIRSAILAAAPGAREI---GD 432

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                      L  GD +V+  K 
Sbjct: 433 RAEAIRTAIGELQPGDALVIAGKG 456


>gi|270291605|ref|ZP_06197825.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
 gi|270279924|gb|EFA25762.1| UDP-N-acetylmuramyl-tripeptide synthetase [Pediococcus acidilactici
           7_4]
          Length = 507

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 67/465 (14%), Positives = 132/465 (28%), Gaps = 57/465 (12%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGH---DFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
           +GI+ DSR + P + FF        G+    ++  A + GA   V   +         + 
Sbjct: 30  SGITYDSRKVRPGDMFFCK------GNFEPAYLKAAREAGATTYVAEREYPE---GTGMT 80

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V +V  A+  L+       ++   II ITG+ GKT++       L+        + S
Sbjct: 81  AIIVTNVTRAMAVLSATYYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFS 140

Query: 143 YNNHIGVPLTL------------ARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRP 184
             + I  P                 +  D+   +        + +S    +R   + ++ 
Sbjct: 141 TIDRIVGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKY 200

Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +   I P H+        E+    K ++    ++                   +   
Sbjct: 201 DCGIFLNITPDHIGRNEHKDFEDYLHCKLQLMVNSKRCIIDADTNRFEDVYGAAKATTDP 260

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM----LM 298
               ++S   +        K  +    +         S +      G +           
Sbjct: 261 KQIYLFSADPANGGVDYTIKNAEDDLINNRFTIAAISSTKPALAITGEYDLNVAGDYNQS 320

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 I  A       A      +     R       G   +  + Y  N AS++A + 
Sbjct: 321 NATAAIIAAALAGADRDAALKPLNEIVIPGRMEYLAIPGHGVVFVD-YAHNYASLRALLK 379

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-------- 410
            +     + +G+ I V+G     G+   S      + LS       +L+           
Sbjct: 380 FVKH--QYHDGKAIVVVGSP---GDKGISRRAGFGKALSEQ-ADVAYLTTDDPGFEDPQD 433

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +    P ++ VH                   D+VV+  K 
Sbjct: 434 IIAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKG 478


>gi|124023806|ref|YP_001018113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964092|gb|ABM78848.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9303]
          Length = 538

 Score = 89.9 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 72/492 (14%), Positives = 139/492 (28%), Gaps = 56/492 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--- 57
           M  +   H LL+A+       +    +  +S DSR++A    F  + G   DG  F    
Sbjct: 32  MTQM--LHSLLRAVGLPVPEGLANPCLAMVSCDSRAVARGCLFLGLPGEQVDGGSFWRQA 89

Query: 58  ----------------------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
                                   AV      VVV+  + A +G L+   +       AL
Sbjct: 90  LAAGAEAAVIGPAAAALRPPGPKDAV------VVVSEPVAAWVGQLAAAFWQQPSSRLAL 143

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             +       +   +I    SV    +  +    ++                        
Sbjct: 144 IGVTGTNGKTTTTHLIEHL-SVAVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLA 202

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             V+    +  + +S     +      R   AV T +   HL   S +E    AKA++F 
Sbjct: 203 QAVEAGAELGAMEVSSHALEQQRVAGCRFAGAVFTNLTQDHLDYHSSMEAYFEAKAQLFA 262

Query: 216 GL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--QS 270
                  +    +N D  +   L  +      ++  + G  + AD +L   +        
Sbjct: 263 PPLLESGSAKAVVNIDGPWGARLAQRLGDTCWRSSLAEGVLQRADAELTMTELTMSSAGV 322

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +             +G     N+L  +G++      +   +KA++ F    GR    
Sbjct: 323 QGRLISPCGEGWFDSPLLGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGR--ME 380

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  +     + +         +     + L+   P        V G     G        
Sbjct: 381 RVLIPAADASQVPTVLVDYAHTPDGLENALTASRPFTSKNLCCVFG----CGGDRDRGKR 436

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                ++      V ++  +            +   +P+   +              +  
Sbjct: 437 SQMAAIAARLADRVVVTSDNPRTEDPQQILVDVVAGIPQGTALTVEVDRAVAIALAIAEA 496

Query: 442 VDGDVVVV--KS 451
             GDVV+V  K 
Sbjct: 497 GPGDVVLVAGKG 508


>gi|330859319|emb|CBX69666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 298

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 88/294 (29%), Gaps = 24/294 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL           P+  +  +++DSR  A  + F AI G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWGLDAPERALREMTLDSRVAAAGDLFVAIVGHQTDGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGS----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
             VV   D VA   S      +PV  + ++   L+KLA     +  A +  +  +     
Sbjct: 61  AAVVAEADGVAPDASMVEMHGVPVIYLRNLNQHLSKLAGQFYHQPGAALRLVGVTGTNGK 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
           T     +A  +               G+   +          +                 
Sbjct: 121 TTTTQLLAQWAKMLGETSAVMGTVGNGLLGQVIPTENTTGSAVDIQHLLRNLVDQGATFA 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G I+     +    AV T ++  HL     +    +AK  +F   +    I  
Sbjct: 181 AMEVSSHGLIQNRVAALPFAAAVFTNLSRDHLDYHGNMASYEAAKWLLFSTHQSEHKIIN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             D+     L     A+ +    +     N  +         +           
Sbjct: 241 ADDEVGRRWLGQLPQAVAVSMENNIPVGWNGPWLSASQVHYHDNGASIAFDSSW 294


>gi|290969167|ref|ZP_06560692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
 gi|290780673|gb|EFD93276.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Megasphaera genomosp. type_1 str. 28L]
          Length = 499

 Score = 89.9 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 96/486 (19%), Positives = 166/486 (34%), Gaps = 55/486 (11%)

Query: 4   LWTFHDLLQAIQG-HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           + T  +L   +   H +    +  V GI+ DSR + P + F  + G H DG  F   A  
Sbjct: 1   MKTIEELCGQVSATHEVRGDARVQVRGITADSRDVQPGDLFVCVAGAHVDGKTFAAQAAA 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKT 120
           KGA  V+    +    G++      V D+  A+ ++          K  +I +TG+ GKT
Sbjct: 61  KGAVAVLTTEPLPLPDGTV---QIIVPDIHAAVEEMVPFFYDYPGKKMRMIGVTGTNGKT 117

Query: 121 TTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFEL-GMSHLGEIRFL 178
           TT  ++   L +           +     + L +     DV      L  M   G    +
Sbjct: 118 TTTHIIAHILRTAGYHVGVLGTIHALMDDLELPIHNTTPDVVELQRFLAQMYARGITHVV 177

Query: 179 THLV------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG------LEKT 220
             +                 AV T +   HL     +E  A+AKA++F G      ++K 
Sbjct: 178 MEVSSHALALQRVAGIEYDTAVFTNLTQDHLDFHKTMENYAAAKAKLFRGLTAGTPVKKG 237

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T  LN DD +  L++      G   + ++G  + A  +    +   + S  +V      
Sbjct: 238 KTAVLNRDDPWSVLMRKAC---GTAEVLTYGTEREASLRGTHLQVALKHSAFDVTGPFGD 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M +  +  G     N L  +G       D +T  KA+  FH   GR +      +     
Sbjct: 295 MHLQMNITGLFNVYNTLAAIGAAYAEGVDPETIGKAMQTFHAVPGRFELVEAGQDFAIVV 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                Y+  P S++ A++    ++PH     I V G     G         +   ++  +
Sbjct: 355 D----YSHTPDSLEKALTTARAMNPHK---IIVVFG----CGGDRDRTKRPIMGRIAATH 403

Query: 401 ISH-VWL------------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               V                     +K+AL                    +    GD+V
Sbjct: 404 ADIPVVTSDNPRSENPEAIVAEVAAGVKEALQPGQQYEVLTDRRRAIRRAVALANTGDMV 463

Query: 448 VV--KS 451
           ++  K 
Sbjct: 464 LIAGKG 469


>gi|209558880|ref|YP_002285352.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes NZ131]
 gi|209540081|gb|ACI60657.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus pyogenes NZ131]
          Length = 481

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 73/477 (15%), Positives = 136/477 (28%), Gaps = 50/477 (10%)

Query: 4   LWTFHDLLQAIQGH---SIGIVPQ--------GFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           + T   LL  ++       G+                +S DSR +  +  FFA KG  + 
Sbjct: 1   MITIEQLLDILKKDHNFREGLDADGYHYHYQGLSFERLSYDSRQVDGKTLFFA-KGATFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             D++  A+  G  L +   D       L IPV  V D+  A++ +A+A     + K  +
Sbjct: 60  A-DYLKEAITNGLQLYISEVDY-----ELGIPVVLVTDIKKAMSLIAMAFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        L    K            G     +++       +F +   
Sbjct: 114 LAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAE 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +        +     A +          +    ++        + +             
Sbjct: 174 CVTNGMTHLIMEVSSQAYLVD------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +SF   + AD +   +   S+      Q      +    G
Sbjct: 228 HKRLLMENSRAVVINSGMDHFSFLADQVADQEHVFYGPLSDNQITTSQAFSFEAKGQLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+     +       +D 
Sbjct: 288 HYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRVPGRMEVLTMTNHAKVFVDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +LS +  H  G+ + +LG     GE  ++   D   V+  +    V
Sbjct: 348 AHNGDSLE-----KLLSVVEEHQTGKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTV 399

Query: 405 WLSG-----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
            L+           +   +   I   V      +       S      D V++  K 
Sbjct: 400 ILTADDPNFEDPEDISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKG 456


>gi|25011503|ref|NP_735898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae NEM316]
 gi|77413369|ref|ZP_00789563.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
 gi|46577059|sp|Q8E4E0|MURE_STRA3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|24413041|emb|CAD47120.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160611|gb|EAO71728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae 515]
          Length = 484

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 126/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSEIDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S+A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|307706003|ref|ZP_07642826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
 gi|307620422|gb|EFN99535.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus mitis SK564]
          Length = 481

 Score = 89.5 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 81/505 (16%), Positives = 151/505 (29%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH          + I  DSR    +  FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDSLFREIIDQGHYHYNYSDVVFDTICYDSRKAKEKSLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+L A+ +G G  V   D       + IP   V D+  A++ +A+      + K  +
Sbjct: 60  -KEFLLSAISQGLGWYVAEKDY-----EVGIPAIIVSDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQEHDFYGSQSSNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSGFHVL-----ALKDALPRSI--HVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+          A+ D +   I   V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYENPMAIADEISSYIDHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E +P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEAYP 471


>gi|71902980|ref|YP_279783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS6180]
 gi|123640434|sp|Q48V28|MURE_STRPM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|71802075|gb|AAX71428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS6180]
          Length = 481

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 127/443 (28%), Gaps = 39/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+      + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMVFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F +    +        +     A +          +    
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQLR 261
           ++        + +                LL   S A         +SF   + AD +  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFSFLADQVADQEHV 261

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNMLMTLGIVSILTADVDTAIKALS 318
            +   S+      Q      +    G          N    +           +      
Sbjct: 262 FYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+     +       +D ++N +         +LS +  H  G+ + +LG  
Sbjct: 322 GIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGKLMLILGAP 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMD 431
              GE  ++   D   V+  +    V L+           +   +   I   V      +
Sbjct: 377 GNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDRE 433

Query: 432 GLFLFIQSSLV-DGDVVVV--KS 451
                  S      D V++  K 
Sbjct: 434 QAIQKAMSLCQGAKDAVIIAGKG 456


>gi|76787595|ref|YP_330032.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus agalactiae A909]
 gi|77411511|ref|ZP_00787855.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
 gi|123601572|sp|Q3K0C1|MURE_STRA1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|76562652|gb|ABA45236.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae A909]
 gi|77162437|gb|EAO73404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae CJB111]
          Length = 484

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 126/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSEIDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S+A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|149186207|ref|ZP_01864521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
 gi|148830238|gb|EDL48675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Erythrobacter sp. SD-21]
          Length = 492

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 141/453 (31%), Gaps = 38/453 (8%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
            +  V G +ID+R +AP   F A +G   +G DFI  A+        V     A+     
Sbjct: 18  AEINVTGFAIDNRKVAPGTVFGAFQGAQVNGEDFIPAAI----EAGAVAVVARAAAKVEG 73

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI--------- 133
                 D       +LA      +   I+A+TG+ GKT+  EM                 
Sbjct: 74  ALHIASDIPRKCFAELAAGFFTPAPEHIVAVTGTNGKTSCVEMTRQIWRMSGERAASIGT 133

Query: 134 ---KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAV 188
                    + +      +   L+ M      G+  +    S  G  ++    V    A 
Sbjct: 134 LGVTTPDESVSTGLTTPDIVTFLSNMSGLAREGVTHVAYEASSHGLSQYRNEGVAVEAAG 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T  +  HL   + +E+  +AK  +F+ +   G   + +  +      A+      +   
Sbjct: 194 FTNFSRDHLDYHADMEDYFAAKMRLFDEVVSDGATAVIWMGAGESGWNARVVDHAKQRGL 253

Query: 249 SFGK--SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +      +  D +L   +       + V+  G    +    IG +   N L++ G+    
Sbjct: 254 TVMTVGEQGEDIRLTHREPTQLGQSLTVEHAGTERTINLPLIGAYQVSNALVSGGLALAT 313

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D      A++   P  GR          G    ID ++  +          ++ + PH
Sbjct: 314 GIDASRVWDAVARLQPVRGR-LERAVIAPSGAPVYIDYAHTPDALEA-----AIAALRPH 367

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA-LPR 420
             GR I V G     G              +      V ++     G     ++ A L  
Sbjct: 368 VTGRLITVFGA----GGDRDHGKRAPMGEAAAKASDLVIVTDDNPRGEDPADIRRAVLEG 423

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                 +     D+V++  K 
Sbjct: 424 AGEAREVAGRREAIHAAIAEAGKDDIVLIAGKG 456


>gi|78185154|ref|YP_377589.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
 gi|78169448|gb|ABB26545.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9902]
          Length = 502

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/479 (14%), Positives = 134/479 (27%), Gaps = 45/479 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +LL+ +            +  ++ DSR   P   F  + G   DG  F   A+  GA 
Sbjct: 5   LDELLRDVGLTPPAGGTNPQIEAVTSDSRLAGPGSLFVGLPGERVDGGLFWRQALNAGAA 64

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVG------ 118
             V+     AS          V  + V   L +LA +   R    +  +  +        
Sbjct: 65  AAVIGPAAAASDPPGDHDQVLVVSEPVASTLGELASSFWNRPSERMALLGVTGTNGKTTT 124

Query: 119 ----KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP------VDVDFGIFELG 168
               +                     G             R+             +  + 
Sbjct: 125 TYLIEHLALACGRSTALFGTLVNRWPGHSVTATHTTAFADRLQAQLSEAASAGSQLAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG---LEKTGTIFL 225
           +S     +      R   AV T +   HL     +++   AKA +F             +
Sbjct: 185 ISSHALAQHRVAGCRFAGAVFTNLTQDHLDYHLSMQDYFEAKALLFSEALLQAGPARAVV 244

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD +   L  +   LG +   S      A+ ++      S      +           
Sbjct: 245 NGDDPWGAKLAER---LGSQCWRSSFTDSTAELRMEDLSMTSRGVSGRLISPLGEGAFQS 301

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLID 343
             +G     N+L  +G++      +   ++A+S F    GR +R     A+     T++ 
Sbjct: 302 PLLGRFNLMNLLQAVGVLLQQQLPLPDLLRAVSDFRGVPGRMERVLLEDAMTNSLPTVLV 361

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +          + L+   P  EG+ I V G     G             ++      
Sbjct: 362 DYAHTPDG----LENALAAARPFAEGKLICVFG----CGGDRDRGKRPQMAAIAARLADR 413

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   +P  +                +     D+V+V  K 
Sbjct: 414 VVVTSDNPRTEDPQRILEDVLQGIPDGVDRVVESDRGVAIAQTIAEADAADLVLVAGKG 472


>gi|19745543|ref|NP_606679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS8232]
 gi|94987955|ref|YP_596056.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94989829|ref|YP_597929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS10270]
 gi|25453128|sp|Q8P2B4|MURE_STRP8 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224785|sp|Q1JN87|MURE_STRPC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224786|sp|Q1JID8|MURE_STRPD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|19747663|gb|AAL97178.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes MGAS8232]
 gi|94541463|gb|ABF31512.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS9429]
 gi|94543337|gb|ABF33385.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS10270]
          Length = 481

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 134/464 (28%), Gaps = 41/464 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L A   H            +S DSR +  +  FFA KG  +   D++  A+  G 
Sbjct: 16  NFREVLDADGYHYHYQG--LSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
            L +   D       L IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT  
Sbjct: 72  QLYISEVDY-----ELGIPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                 L    K            G     +++       +F +    +        +  
Sbjct: 127 YFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEV 186

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-- 241
              A +          +    ++        + +                LL   S A  
Sbjct: 187 SSQAYLVD------RVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVV 240

Query: 242 -LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNML 297
                  +SF   + AD +   +   S+      Q      +    G          N  
Sbjct: 241 INSGMDHFSFLADQVADQEHVFYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQE 300

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +           +              G+     +       +D ++N +        
Sbjct: 301 NAMAAGLACLRLGASLADIQKGIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE----- 355

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVL 412
            +LS +  H  G+ + +LG     GE  ++   D   V+  +    V L+          
Sbjct: 356 KLLSVVEEHQTGKLMLILGAPGNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPE 412

Query: 413 ALKDALPRSI--HVHYSETMDGLFLFIQSSLV-DGDVVVV--KS 451
            +   +   I   V      +       S      D V++  K 
Sbjct: 413 DISKEIASHIARPVEIISDREQAIQKAMSLCQGAKDAVIIAGKG 456


>gi|332704506|ref|ZP_08424594.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554655|gb|EGJ51699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 76/448 (16%), Positives = 134/448 (29%), Gaps = 42/448 (9%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           S  +   + F A+ GP  DG  FI  A+ +GA  +V     V      +  +   DD   
Sbjct: 25  SGKVGAGDVFVAVPGPQADGAGFIPDALARGAAWIVA-APGVRLPEGATARLVTHDDPRQ 83

Query: 94  ALNKLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKK---------TYACIGS 142
           AL  LA AA         ++ +TG+ GKTT   +L        +               S
Sbjct: 84  ALGDLAQAAFGTAGHGYKLVGVTGTNGKTTISYILEQLFGGSGRKVGVLGTVSYRWPGFS 143

Query: 143 YNNHIGVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
            +  +  P  L+   +        VD  + E+    L + R          AV+T +   
Sbjct: 144 MDAPLTTPDCLSLHEMLARMDKAGVDLAVMEVSSHALDQQRVAGLAYD--AAVLTNLTQD 201

Query: 196 HLSNFSGIEEIASAKAEIFEG-LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           HL     +E    AKA +F    ++     +NY+D +   L  +  + G   +    ++ 
Sbjct: 202 HLDYHKDMETYFQAKARLFRELPKEGKAWVVNYEDPYGLRLLREGLSAGRSVLGYGLETP 261

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                  + +  +  +                        N +  L  + +         
Sbjct: 262 PVGMPAIRAEIRAMSAAGLELAVEFEGRRFELVSPLVGRHNAMNLLTAMGVGFKLGLRES 321

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
              ++       G+  R     G    +D ++  +       ++VLS +   G  R + V
Sbjct: 322 DMQALAGFTGVSGRLERVTNPHGLNVFVDYAHTPDA-----LVNVLSAVKALGVRRLVCV 376

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVH 425
            G     G         L       +     L+  +            +K  L     V 
Sbjct: 377 FG----CGGNRDRAKRPLMGQAVCRHADVAVLTSDNPRHEDPLAIIEDVKPGLSGCARVV 432

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                          L   D +VV  K 
Sbjct: 433 IEPDRRKAIALALEGLTAEDALVVAGKG 460


>gi|76797685|ref|ZP_00779954.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
 gi|76586979|gb|EAO63468.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
           ligase(EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide
           synthetase) (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           agalactiae 18RS21]
          Length = 484

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 126/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSEIDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLIMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S+A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESKAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|223986480|ref|ZP_03636481.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
 gi|223961542|gb|EEF66053.1| hypothetical protein HOLDEFILI_03796 [Holdemania filiformis DSM
           12042]
          Length = 535

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 145/367 (39%), Gaps = 20/367 (5%)

Query: 91  VLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +     KLA          I I ITGS GKT++K +L   LS    +     S+N  +G+
Sbjct: 171 IKKHYMKLAKEILKSHDRLIKIGITGSYGKTSSKNILQQILSEKFYSLPTPASFNTPMGI 230

Query: 150 PLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            +T+   +    +  I E+G  H+G+I  L   V+P I ++T+I P HL+ F   E I +
Sbjct: 231 TITIREQLKPTHEVFICEMGADHVGDIEQLMDFVQPQIGLVTSIGPQHLNTFGSQENIVT 290

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K ++ E L  TG   LN D+   EL++           +   + ++ D++        +
Sbjct: 291 EKMKMIEKLPVTGFGVLNKDN---ELIRNYYIKNKCPIAWYGIEQEDVDYRAVNISFGPQ 347

Query: 269 QSWMEVQLQGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            S  ++  +    +      +G H   N+L  + +   L    +    A++     E R 
Sbjct: 348 GSSFDIHTREGADIPFKTRLLGEHNIANILAAVAVGRHLGVSWEQLQSAVAQVRYVEHRL 407

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +          +T ID+++N+NP     ++ VL  +     G R  V   M ++G     
Sbjct: 408 E----VKKINGYTFIDDAFNSNPVGSAMSLQVLKTMP----GTRFIVTPGMIDLGPRQHE 459

Query: 388 FHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLV 442
            +      +       V L G      + + L        HVH   T+   F  +     
Sbjct: 460 INKQFGMKMKDCA-DEVILVGKRQTEPIVEGLQACGFDMAHVHIVATVKEAFGLVYQKAA 518

Query: 443 DGDVVVV 449
             D +++
Sbjct: 519 YTDTILL 525


>gi|77405779|ref|ZP_00782864.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
 gi|77175636|gb|EAO78420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus agalactiae H36B]
          Length = 484

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/429 (13%), Positives = 125/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D       + I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITAGLSFYVSEIDY-----GVDI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSKAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|306831982|ref|ZP_07465137.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
 gi|304425908|gb|EFM29025.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus gallolyticus subsp. gallolyticus TX20005]
          Length = 483

 Score = 89.5 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 66/459 (14%), Positives = 132/459 (28%), Gaps = 63/459 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADKSTLFFA-KGATFK-KEYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+           IIA TG+ GKTT        L    +     
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 141 GSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                  G     +++                   +   I E+  S    +    + +  
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEV--SSQAYLVERVYGLTF 202

Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +     I+P H+        E+    K  +    +           +      A     
Sbjct: 203 DVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDYFNVVAQQVAN---- 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                       +   +       + +++        +       IG    +N +     
Sbjct: 259 ---------TPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++            +          +D ++N +         +LS 
Sbjct: 310 CLRLGTSLADIQKGIAQTSVPGRMEVITQTNG---AKVFVDYAHNGDSLE-----KLLSV 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           +  H +G    +LG     GE  ++   D A V++ +   HV L+          A+ + 
Sbjct: 362 VEEHQKGDLHLILGATGNKGESRRA---DFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDG-DVVVV--KS 451
           +   +   +      +       +   +  D V++  K 
Sbjct: 419 IASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKG 457


>gi|306827935|ref|ZP_07461202.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
 gi|304429854|gb|EFM32896.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus pyogenes ATCC 10782]
          Length = 481

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 127/443 (28%), Gaps = 39/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F +    +        +     A +          +    
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQLR 261
           ++        + +                LL   S A         +SF   + AD +  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFSFLADQVADQEHV 261

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNMLMTLGIVSILTADVDTAIKALS 318
            +   S+      Q           G          N    +           +      
Sbjct: 262 FYGPLSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+     +       +D ++N +         +LS +  H  G+ + +LG  
Sbjct: 322 GIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGKLMLILGAP 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMD 431
              GE  ++   D   V+  +    V L+           +   +   I   V      +
Sbjct: 377 GNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDRE 433

Query: 432 GLFLFIQSSLV-DGDVVVV--KS 451
                  S      D V++  K 
Sbjct: 434 QAIQKAMSLCQGAKDAVIIAGKG 456


>gi|291557015|emb|CBL34132.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           V10Sc8a]
          Length = 511

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 72/352 (20%), Positives = 138/352 (39%), Gaps = 22/352 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L     I 
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
               D+ +      +     K   ++      D+           +   V    +  +  
Sbjct: 286 FLNYDNEY-----IAKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQFT 340

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H  QN++  + + + L       +  +        R +     +     T+ID+
Sbjct: 341 TKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQ----IIKGTNKTIIDD 396

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N+NP   KAA+  L+      EG +I V   M E+GE     +    E  +      V
Sbjct: 397 AFNSNPTGAKAALDTLAVF----EGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDFV 451

Query: 405 WLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD--VVVV 449
              G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 452 IAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNDALAKVENIKTGGEKKIVLL 503


>gi|257900334|ref|ZP_05679987.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
 gi|257838246|gb|EEV63320.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium Com15]
          Length = 509

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 74/471 (15%), Positives = 155/471 (32%), Gaps = 53/471 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
           I+G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  IKGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMAEAVENGMTHLVMEV--SSQA 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 203 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+    + +    +  +    ++    + I   
Sbjct: 259 YFDLLKETADLFQIPTITYGRSEKSNYQVIHSDKGTHGFTLSSRQDHLAICDTAYDILLA 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A +        G+  +   + G    +D ++N    
Sbjct: 319 GGFNQENAASAIIAAALTGASSQDAQAGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS         +    
Sbjct: 377 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSETADVAFLTADDPA 431

Query: 409 -FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 + + +  +I      VHY            +     D VV+  K 
Sbjct: 432 FEDPQKIAEEINEAITNPELIVHYEMDRPEAIRRALAESTSQDSVVIAGKG 482


>gi|21909820|ref|NP_664088.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS315]
 gi|28896487|ref|NP_802837.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes SSI-1]
 gi|25453113|sp|Q8K8H6|MURE_STRP3 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21904006|gb|AAM78891.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase [Streptococcus pyogenes
           MGAS315]
 gi|28811741|dbj|BAC64670.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl- 2,
           6-diaminopimelate ligase [Streptococcus pyogenes SSI-1]
          Length = 481

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 129/443 (29%), Gaps = 39/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F +    +        +     A +          +    
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQLR 261
           ++        + +                LL   S A     +   +SF   + AD +  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSVMDHFSFLADQVADQEHV 261

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNMLMTLGIVSILTADVDTAIKALS 318
            +   S+      Q      +    G          N    +           +      
Sbjct: 262 FYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+     +       +D ++N +         +LS +  H  G+ + +LG  
Sbjct: 322 GIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGKLMLILGAP 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMD 431
              GE  ++   D   V+  +    V L+           +   +   I   V      +
Sbjct: 377 GNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDRE 433

Query: 432 GLFLFIQSSLV-DGDVVVV--KS 451
                  S      D V++  K 
Sbjct: 434 QAIQKAMSLCQGAKDAVIIAGKG 456


>gi|15674533|ref|NP_268707.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71910139|ref|YP_281689.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pyogenes MGAS5005]
 gi|21362717|sp|Q9A196|MURE_STRP1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|13621637|gb|AAK33428.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate
           ligase [Streptococcus pyogenes M1 GAS]
 gi|71852921|gb|AAZ50944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS5005]
          Length = 481

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 69/443 (15%), Positives = 128/443 (28%), Gaps = 39/443 (8%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  +  FFA KG  +   D++  A+  G  L +   D       L IPV 
Sbjct: 35  FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEVDY-----ELGIPVV 87

Query: 87  GVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V D+  A++ +A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAAYFAYHMLKESYKPAMFSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F +    +        +     A +          +    
Sbjct: 148 TLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEVSSQAYLVD------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQLR 261
           ++        + +                LL   S A         +SF   + AD +  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFSFLADQVADQEHV 261

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM---AQNMLMTLGIVSILTADVDTAIKALS 318
            +   S+      Q      +    G          N    +           +      
Sbjct: 262 FYGPLSDNQITTSQAFSFEAKGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+     +       +D ++N +         +LS +  H  G+ + +LG  
Sbjct: 322 GIAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGKLMLILGAP 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMD 431
              GE  ++   D   V+  +    V L+           +   +   I   V      +
Sbjct: 377 GNKGESRRA---DFGRVIHQHPNLTVILTADDPNFEDPEDISKEIASHIARPVEIISDRE 433

Query: 432 GLFLFIQSSLV-DGDVVVV--KS 451
                  S      D V++  K 
Sbjct: 434 QAIQKAMSLCQGAKDAVIIAGKG 456


>gi|167750587|ref|ZP_02422714.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
 gi|167656513|gb|EDS00643.1| hypothetical protein EUBSIR_01563 [Eubacterium siraeum DSM 15702]
          Length = 511

 Score = 89.1 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 138/352 (39%), Gaps = 22/352 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L     I 
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
               D+ +      +     K   ++      D+           +   V    +  +  
Sbjct: 286 FLNYDNEY-----IAKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQFA 340

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H  QN++  + + + L       +  +        R +     +     T+ID+
Sbjct: 341 TKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQ----IIKGTNKTIIDD 396

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N+NP   KAA+  L+      +G +I V   M E+GE     +    E  +      V
Sbjct: 397 AFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDFV 451

Query: 405 WLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD--VVVV 449
              G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 452 IAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNEALAKVENIKTGGEKKIVLL 503


>gi|291530205|emb|CBK95790.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium siraeum
           70/3]
          Length = 511

 Score = 89.1 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 138/352 (39%), Gaps = 22/352 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
              T++ +TGS GKT+TK  L   L +         SYN  +GV   +  ++    +  +
Sbjct: 166 PDLTVVGLTGSYGKTSTKFYLEKLLGAKYNVLMTPESYNTTMGVVKVVRGQLNATHEIFL 225

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+G  ++GEI+ +  +V+P   +IT+I P HL  F  I+ I   K E+ + L     I 
Sbjct: 226 CEMGAKNVGEIKEICDIVKPKHGIITSIGPQHLETFKSIDNIIKTKFELADSLPDKDGII 285

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
               D+ +      +     K   ++      D+           +   V    +  +  
Sbjct: 286 FLNYDNEY-----IAKHECNKNKVTYSLGGGTDYYADNISVSENGTQFTVHNGNEEKQFA 340

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H  QN++  + + + L       +  +        R +     +     T+ID+
Sbjct: 341 TKLIGSHNVQNIVGAIAVANTLGVPFADLVMPVKRLECVPHRLQ----IIKGTNKTIIDD 396

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N+NP   KAA+  L+      +G +I V   M E+GE     +    E  +      V
Sbjct: 397 AFNSNPTGAKAALDTLAVF----DGFKILVSPGMVELGEKEYELNKRFGEQAAEI-CDFV 451

Query: 405 WLSGF-HVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGD--VVVV 449
              G    + + D L          + ++ ++     +++    G+  +V++
Sbjct: 452 IAVGERQAVPIVDGLKAKGYPEEKTYVAKNLNEALAKVENIKTGGEKKIVLL 503


>gi|309806638|ref|ZP_07700634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
 gi|308166943|gb|EFO69126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 03V1-b]
          Length = 519

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 90  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 150 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 210 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTAHHGTVIVD-YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 385 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 437

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 438 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICG 487


>gi|302190928|ref|ZP_07267182.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus iners AB-1]
 gi|309805417|ref|ZP_07699464.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|309808241|ref|ZP_07702150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|312873648|ref|ZP_07733695.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|312875730|ref|ZP_07735725.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|329921022|ref|ZP_08277550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
 gi|308165235|gb|EFO67471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 09V1-c]
 gi|308168529|gb|EFO70638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LactinV 01V1-a]
 gi|311088722|gb|EFQ47171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2053A-b]
 gi|311090901|gb|EFQ49298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus iners LEAF 2052A-d]
 gi|328935298|gb|EGG31778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus iners SPIN 1401G]
          Length = 519

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 90  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 150 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 210 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTANHGTVIVD-YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 385 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 437

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 438 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICG 487


>gi|289566694|ref|ZP_06447110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
 gi|289161511|gb|EFD09395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-L-lysine ligase
           [Enterococcus faecium D344SRF]
          Length = 485

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 251 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 422

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 423 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|306834104|ref|ZP_07467224.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
 gi|304423677|gb|EFM26823.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus bovis ATCC 700338]
          Length = 483

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/459 (14%), Positives = 132/459 (28%), Gaps = 63/459 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FFA KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSQISFDSREADKSTLFFA-KGATFK-KEYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+           IIA TG+ GKTT        L    +     
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHRPAMFS 144

Query: 141 GSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                  G     +++                   +   I E+  S    +    + +  
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVQNGMTHLIMEV--SSQAYLVERVYGLTF 202

Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +     I+P H+        E+    K  +    +           +      A     
Sbjct: 203 DVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDYFNVVAQQVAN---- 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                       +   +       + +++        +       IG    +N +     
Sbjct: 259 ---------TPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++            +          +D ++N +         +LS 
Sbjct: 310 CLRLGTSLADIQKGIAQTSVPGRMEVITQTNG---AKVFVDYAHNGDSLE-----KLLSV 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           +  H +G    +LG     GE  ++   D A V++ +   HV L+          A+ + 
Sbjct: 362 VEEHQKGDLHLILGATGNKGESRRA---DFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDG-DVVVV--KS 451
           +   +   +      +       +   +  D V++  K 
Sbjct: 419 IASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKG 457


>gi|315653102|ref|ZP_07906027.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
 gi|315489467|gb|EFU79104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners ATCC 55195]
          Length = 519

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 90  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 150 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 210 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 270 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 329

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 330 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTANHGTVIVD-YAHNKAS 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 385 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 437

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 438 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICG 487


>gi|294614320|ref|ZP_06694237.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
 gi|291592792|gb|EFF24384.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1636]
          Length = 501

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 251 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 422

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 423 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|257886353|ref|ZP_05666006.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|261207201|ref|ZP_05921890.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
 gi|257822209|gb|EEV49339.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,501]
 gi|260078829|gb|EEW66531.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium TC 6]
          Length = 509

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 145 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 203 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 259 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 319 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 377 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 430

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 431 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|293568181|ref|ZP_06679515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|294619967|ref|ZP_06699339.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|294622174|ref|ZP_06701242.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
 gi|291589081|gb|EFF20895.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1071]
 gi|291593797|gb|EFF25299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1679]
 gi|291598301|gb|EFF29392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium U0317]
          Length = 501

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 251 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 422

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 423 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|257883276|ref|ZP_05662929.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
 gi|257818934|gb|EEV46262.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,502]
          Length = 509

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 203 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 259 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 319 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 377 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 430

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 431 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|293557173|ref|ZP_06675725.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
 gi|291600674|gb|EFF30974.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1039]
          Length = 501

 Score = 88.8 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 154/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLNGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+ + +++Q+ +  + +    +       ++    + I   
Sbjct: 251 YFDLLRETADLFQIPTITYGRLEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 369 SLKTLLEFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 422

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 423 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|330501919|ref|YP_004378788.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
 gi|328916205|gb|AEB57036.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina NK-01]
          Length = 487

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 158/454 (34%), Gaps = 41/454 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  +++DSR + P + F A+ G   DG   I  A+ +GA  V    +  AS+ + S  
Sbjct: 16  VLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAIARGAAAVAFEAEGAASMHADSAV 75

Query: 85  VFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V  + G L+ +A            ++ +TG+ GKT+  ++L  AL  + +    +G+
Sbjct: 76  LVPVKGLAGQLSAIAGRFYGEPSRALYLVGVTGTNGKTSVSQLLAQALDLLGQPCGIVGT 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAV 188
             N     L   +       G+                + +S  G  +     +   +AV
Sbjct: 136 LGNGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEFDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   +AKA++           +N DD+F   L A++H   +  I 
Sbjct: 196 FTNLSRDHLDYHGSMEAYGAAKAKL-FAWPNLRCRVINLDDAFGRELAAQTHESRL--IG 252

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                 +A     +           +        +  + +G     N+L  +G +  L  
Sbjct: 253 YSLNDADAFLYCSEAHFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLLAVVGALLGLDY 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +K L       GR    R         ++D ++  +         VL  + PH E
Sbjct: 313 ALDEILKVLPQLQGPAGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEAMRPHVE 365

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419
           GR + + G     G         L   ++      VW++  +            ++    
Sbjct: 366 GRLVCLFG----CGGDRDRGKRPLMAAVAERLADVVWVTDDNPRTEEPAQIVADIRAGFA 421

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               V +          + +     DV+V+  K 
Sbjct: 422 APERVQFIHGRGDAIARLVAQAEAADVLVLAGKG 455


>gi|330469294|ref|YP_004407037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
 gi|328812265|gb|AEB46437.1| UDP-N-acetylmuramyl-tripeptide synthetase [Verrucosispora maris
           AB-18-032]
          Length = 497

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 86/511 (16%), Positives = 149/511 (29%), Gaps = 69/511 (13%)

Query: 7   FHDLLQAIQGHSIGIVP---QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             DL            P      V G++  S  + P + + A+ G    G +F+  A   
Sbjct: 6   LGDLA----ARLAVAPPTTVDATVTGVTHASGEVHPGDLYAALPGARRHGAEFVADAAAA 61

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA  V+ +           +P   V D    L  LA A       K T+I +TG+ GKT+
Sbjct: 62  GAVAVLTDAAGAELAAGYGLPTLVVADPRAVLGTLASAVYGDPTEKLTVIGVTGTAGKTS 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIF 165
           T  ++   L +   T   IG+    +G                  +  A +   V   + 
Sbjct: 122 TAYLVESGLRAAGHTTGLIGTVETRLGDLVLDSVRTTPEATDLHAMLAAALERGVTAVVM 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+  SH   +  +   VR  +   T     HL   +  ++  +AKA +F+G      +  
Sbjct: 182 EV-SSHALAMGRV-GGVRFDVGGWTNFGSDHLDFHADADDYFAAKARLFDGRCAHEVLNH 239

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +                   +  + G      +      +   Q +      G  ++   
Sbjct: 240 DDPA------LKALFKPATISYSAAGDPSATWWAEDVNGEGYAQRFTLHGPDGLVLDAGV 293

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L+ + ++     D  TA + ++      GR +    A            
Sbjct: 294 ALPGRHNVANALLAVAVLVAAGVDAATAARGVAACGGVPGRLESVGVAGGVRGVVDYA-- 351

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                    A ++VL+ +     GR I V+G     G              +      V 
Sbjct: 352 -----HKTDAVVAVLAALRELSSGRLICVIGA----GGDRDRGKRPAMGAAAAKGADVVL 402

Query: 406 LSGFH----------VLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDV--VVVKS 451
           ++  +             L  A          E                 GDV  V+ K 
Sbjct: 403 VTDDNPRTEDPATIRAEVLAGAYDAGTRTRIVEVAGRRAAIDEAVRQAEPGDVVAVLGKG 462

Query: 452 -SNSCG-------FY---RLINLLLEEFPAI 471
                        F     L + L   F ++
Sbjct: 463 HERGQEIAGEVFPFDDVTELADALRARFGSL 493


>gi|313638769|gb|EFS03857.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
           [Listeria seeligeri FSL S4-171]
          Length = 122

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 4/121 (3%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           ++P +++  +     +   G+  +  VL DM E+GELS   H + AEVL    I  ++L 
Sbjct: 1   SSPTALQTVLKTFMHMDSKGK-PKYLVLADMLELGELSVPLHQESAEVLEEGTIEKIFLY 59

Query: 408 GFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G  + A        I    V + +T + L   +   +   + ++VK S   G   ++  L
Sbjct: 60  GDAMKAFGAVAEDKIGQGKVQHFDTKESLENALLKEITGNEWILVKGSYGMGLKDVVENL 119

Query: 465 L 465
           +
Sbjct: 120 I 120


>gi|304384559|ref|ZP_07366905.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
 gi|304328753|gb|EFL95973.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus acidilactici DSM 20284]
          Length = 507

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 68/464 (14%), Positives = 132/464 (28%), Gaps = 55/464 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKG--PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           +GI+ DSR + P + FF  KG         ++  A + GA   V   +         +  
Sbjct: 30  SGITYDSRKVRPGDMFFC-KGSFEPA----YLKAAREAGATTYVAEREYPE---GTGMTA 81

Query: 86  FGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V +V  A+  L+       ++   II ITG+ GKT++       L+        + S 
Sbjct: 82  IIVTNVTRAMAVLSATYYEFPQNDLFIIGITGTKGKTSSAYFAHAILNQQYPQQVALFST 141

Query: 144 NNHIGVPLTL------------ARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPH 185
            + I  P                 +  D+   +        + +S    +R   + ++  
Sbjct: 142 IDRIVGPRPEDQFKSDLTTPESMDLFHDMRQAVDNGMKYLVMEVSSQAYLRDRVYGLKYD 201

Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +   I P H+        E+    K ++    ++                   +    
Sbjct: 202 CGIFLNITPDHIGRNEHKDFEDYLHCKLQLMVNSKRCIIDADTNRFEDVYGAARATTDPK 261

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM----LMT 299
              ++S   +        K  +    +         S +      G +            
Sbjct: 262 QIYLFSADPANGGVDYTIKNAEDDLINNRFTIAATSSTKPALAITGEYDLNVAGDYNQSN 321

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                I  A       A      +     R       G   +  + Y  N AS++A +  
Sbjct: 322 ATAAIIAAALAGADRDAALKPLSEIVIPGRMEYLAIPGHGVVFVD-YAHNYASLRALLKF 380

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------- 410
           +     + +G+ I V+G     G+   S      + LS       +L+            
Sbjct: 381 VKH--QYHDGKAIVVVGSP---GDKGISRRAGFGKALSEQ-ADVAYLTTDDPGFEDPQDI 434

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +    P ++ VH                   D+VV+  K 
Sbjct: 435 IAQIMAHIEPGTVEVHQVLDRREAIRQAIVESGPHDIVVLAGKG 478


>gi|259501351|ref|ZP_05744253.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
 gi|259167204|gb|EEW51699.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus iners DSM 13335]
          Length = 505

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 71/470 (15%), Positives = 130/470 (27%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++ +A + GA   V             +    
Sbjct: 23  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSYAKENGAICYVAEQPYPE---GKGMHALI 75

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A++ L+ A     +    +IA TG+ GKTT+   L   L  +      + S  +
Sbjct: 76  VSNVTKAMSLLSAAFYRFPQDDLFLIAFTGTKGKTTSAYFLKGILDKLNGGRTALFSSVD 135

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P    R            +  D+   +        + +S     +     +   + 
Sbjct: 136 DVVGPKPEDRFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 195

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K     +             +      
Sbjct: 196 FFLNITPDHIGVNEHPNFEDYLHCKLQLMVNSRKCIINAMTDHFDEIYAAATTTTNPDSI 255

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------------EVVHHGIGYHM 292
            +++     N D +     + +       + + K                     IG   
Sbjct: 256 YLFARNDYDNPDLKRPIDFRFASVETDMCETKFKLYSETDAARNIPVEGNYSLKMIGDFN 315

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   +       +                      T+I + Y  N AS
Sbjct: 316 EINATAAIIGAGLAGVNYQDCYDGIKNVTIPGR----METLTTANHGTVIVD-YAHNKAS 370

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +S + +     +   I V+G   + G      F   L+   +      V+L+    
Sbjct: 371 MIALMSFMQKEFDSPK--IIVVVGAPGDKGISRRAGFSESLSLYANQ-----VFLTTDDP 423

Query: 408 G-FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           G      + D +          V                  D DVV++  
Sbjct: 424 GFEDAQVIADEIAAGIDHDRCQVMIELDRQKAIAEAIKGAKDDDVVLICG 473


>gi|119960821|ref|YP_947465.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
 gi|119947680|gb|ABM06591.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter aurescens
           TC1]
          Length = 536

 Score = 88.4 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 83/496 (16%), Positives = 155/496 (31%), Gaps = 65/496 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV----- 61
              +  A+   +        V GI+++SR++   + + A+ G    G DF+  AV     
Sbjct: 19  LATIADALGVAAPDASQDRGVTGITLNSRAVETGDLYMALPGASRHGADFVPQAVEAGAV 78

Query: 62  -----QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV-AARLRSK----ATII 111
                  GA         +A  G   +PV  V +   A+ +LA    R +       T+ 
Sbjct: 79  AVVTDDAGAR-------QLALAGEQPVPVLIVPEPRTAVGRLAALIYRSQPADGGFPTLY 131

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----- 166
            +TG+ GKTTT   +   L +++K    IG+     G     + +       +       
Sbjct: 132 GVTGTNGKTTTTYFINSLLRALEKKPGLIGTIEIVAGGEPIPSLLTTPESTDVHALLALM 191

Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                    + +S           V   +A  T +   HL     ++E    KAE+F   
Sbjct: 192 RERGLDAASMEVSSHAISYHRVDGVMFDVAGFTNLTQDHLDLHGSMDEYFRTKAELFTA- 250

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWME-V 274
            +     +  DD +   L   +        T    G S + D+++         S  E  
Sbjct: 251 GRARHAVVTVDDDWGRQLAETADIPVTTLSTKPVDGSSSSTDWKVASITARGLGSEFELK 310

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G+++ V     G     N  +   +V     D  T   AL    P           +
Sbjct: 311 HADGRTLRVHTGLPGDFNVANAALATVMVLASGVDEHTLQAALDAHDPFTVSVPGRMQLI 370

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +    +++D ++N +  S     ++ +  SP    R I V G   +              
Sbjct: 371 STEPASVVDFAHNPDALS----RALEAVRSPREGSRVIVVFGATGQ----RDKGKRPTMG 422

Query: 395 VLSLYNISHVWLS-----GFHVLALKDALPRSIHV---------HYSET--MDGLFLFIQ 438
            ++      V +S          A++  + +  H             E+   D       
Sbjct: 423 AIAARLADVVIISDDDPHDEDAAAIRAEVLQGAHAARDSENLNSEIIESYPRDAAIKLAV 482

Query: 439 SSLVDGDVVVVKSSNS 454
                 D +++     
Sbjct: 483 DMATGKDTILIAG-RG 497


>gi|213418873|ref|ZP_03351939.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 300

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 100/294 (34%), Gaps = 24/294 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALSSI-KKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------------- 165
           TTT ++L      + + +       N  +G  +                           
Sbjct: 121 TTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFG 180

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S  G ++     ++   +V T ++  HL     +    +AK  ++        I  
Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVN 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             D+     L +   A+ +        + +  +   +  +  ++          
Sbjct: 241 ADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKAEAVEYHDRGVTIRFASSW 294


>gi|69244104|ref|ZP_00602640.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|258614113|ref|ZP_05711883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecium DO]
 gi|293563966|ref|ZP_06678373.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|314940304|ref|ZP_07847471.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|314941860|ref|ZP_07848731.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|314949519|ref|ZP_07852854.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
 gi|314952899|ref|ZP_07855867.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|314994520|ref|ZP_07859793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|314995273|ref|ZP_07860385.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|68196561|gb|EAN10987.1| Cytoplasmic peptidoglycan synthetase, N-terminal:Cytoplasmic
           peptidoglycan synthetases, C-terminal [Enterococcus
           faecium DO]
 gi|291604056|gb|EFF33583.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecium E1162]
 gi|313590529|gb|EFR69374.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a01]
 gi|313591098|gb|EFR69943.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133B]
 gi|313595021|gb|EFR73866.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133A]
 gi|313599344|gb|EFR78189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133C]
 gi|313640480|gb|EFS05060.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0133a04]
 gi|313644133|gb|EFS08713.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecium
           TX0082]
          Length = 501

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 24  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 81

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 82  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 136

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 137 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 195 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 251 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 310

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 311 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 369 SLKTLLKFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 422

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 423 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 474


>gi|257880464|ref|ZP_05660117.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257891505|ref|ZP_05671158.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257894552|ref|ZP_05674205.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260562463|ref|ZP_05832973.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
 gi|257814692|gb|EEV43450.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,230,933]
 gi|257827865|gb|EEV54491.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,410]
 gi|257830931|gb|EEV57538.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium
           1,231,408]
 gi|260073148|gb|EEW61493.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecium C68]
          Length = 509

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 155/472 (32%), Gaps = 55/472 (11%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTD 73
            +G  + +  +     +S DSR       FF  KG ++   +++  A+++G    V    
Sbjct: 32  TRGWHLDVPEKAEFLQLSYDSRKADASTLFFC-KGMNFK-EEYLDSAIEQGIQYYVSEQP 89

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALS 131
              S          V D+  A+  LA+A     ++K  +I  TG+ GKTT        L 
Sbjct: 90  YENSAVG-----IIVTDIRKAMALLAMAFYDYPQNKLKVIGFTGTKGKTTAAYFTKAILD 144

Query: 132 SIKKTY-----------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLG 173
                                 + +H+  P       +    +   +   + E+  S   
Sbjct: 145 HTTNKKTALLSTMNTTLDGKTYFKSHLTTPESLDLYRMMSEAVENGMTHLVMEV--SSQA 202

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                 + +   + +   I+P H+S       ++    K ++    +      +   +S 
Sbjct: 203 YKTQRVYGLTLDVGIFLNISPDHISPIEHPTFDDYFYCKRQLILNSK----TVVLNHESD 258

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +  L  ++  L      ++G+S+ +++Q+ +  + +    +       ++    + I   
Sbjct: 259 YFDLLRETADLFQIPTITYGRSEESNYQVIRSDKGTHGFTLSSHEDRLAICDTAYDILLA 318

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N       +        ++  A          G+  +   + G    +D ++N    
Sbjct: 319 GGFNQENAASAIIAAALTGASSQDAQDGLKEARVPGRMDQLIQSNGAHVYVDYAHN--YL 376

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
           S+K  +        H +GR I VLG     G  + S   D  +VLS       +L+    
Sbjct: 377 SLKTLLKFAKN--EHPDGRVIVVLGSP---GNKAISRRHDFGKVLSET-ADIAFLTADDP 430

Query: 409 --FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  + + +  +I      VHY            +     D VV+  K 
Sbjct: 431 AFEDPKKIAEEINEAITNPDLIVHYEMDRPEAIRRALAESAPQDSVVIAGKG 482


>gi|317052206|ref|YP_004113322.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
 gi|316947290|gb|ADU66766.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfurispirillum
           indicum S5]
          Length = 464

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/456 (13%), Positives = 124/456 (27%), Gaps = 59/456 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLS 82
               + +S D+R I+P   F AI G  +D H  +   +  G     +    +        
Sbjct: 18  DVEFSRLSRDTRDISPDCLFIAIAGSQFDPHLHLPELLSSGKIAGALCQHPVDGPNT--- 74

Query: 83  IPVFGVDDV--LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI-KKTYAC 139
                + D+    A   +A      +   ++ +TG+ GK++T   L     ++  +T   
Sbjct: 75  ---LVLPDLAEREATIAVAAYGNPSAALKVVGVTGTNGKSSTISYLRQVYQALGHRTATI 131

Query: 140 IGSYNNHIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                   G P                +  + +        + +S           +R H
Sbjct: 132 GTLGYAIDGGPSAELANTTPCATTLQHILHLCLQHHVEYVFMEVSSHAIALGRVQGIRFH 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+ T + P HL     +++    K  +F        I           L          
Sbjct: 192 GAIFTNLTPDHLDFHGTMDDYLQTKLRLFTPAPPYAIIHTRRIPRKLPPL---------P 242

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + SFG  ++AD    + +   E     +Q Q        +        N+     + + 
Sbjct: 243 GVLSFGPGEDADIPTTEQQVSPEGIRFCLQGQ-------IYRSPLRGRGNLENVQAVAAF 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              +     +             R+    + G   +ID ++  +         +L     
Sbjct: 296 CHHEGQERQQVARAIAALRPIEGRFMPISHNGRHGIIDYAHTPDALE-----QLLKSTRE 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKD--A 417
              GR I V G     G         L   ++        ++  +         +    A
Sbjct: 351 ICHGRLIVVFG----CGGDRDKTKRPLMGAIASELADICIVTDDNPRTEDPQHIISQIIA 406

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                               +      D+VV+  K 
Sbjct: 407 AMDMGRTTVIHERLRAITCARELANGDDLVVIAGKG 442


>gi|209963951|ref|YP_002296866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
 gi|209957417|gb|ACI98053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Rhodospirillum centenum SW]
          Length = 491

 Score = 88.4 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 97/474 (20%), Positives = 158/474 (33%), Gaps = 40/474 (8%)

Query: 4   LWTFHDLLQ-----AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           +    D++      A+   ++   P   +  ++ DSR I P   F A+ G  +DG DFI 
Sbjct: 1   MKKLSDIMASRTEIAVSALALERDP--PITALTADSRKIVPGTLFAALPGTRHDGRDFIA 58

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV  GA  V+     V   G   + +    +    L  LA A        I A+TG+ G
Sbjct: 59  QAVAAGASAVLAPKGTVLPPGCEHVALIEDLNPRRRLALLAAAFYGAQPQRIAAVTGTNG 118

Query: 119 KTTTKEMLTIALSSIKKT-----------YACIGSYNNHIGVPLTLARMPVD-VDFGIFE 166
           KT+T +      S +                           P+ L R+  +    G+  
Sbjct: 119 KTSTAQFTRQIWSGLGHRSGAMGTLGLVADGFPNIETLTTPDPVELHRLLAELARGGVTH 178

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG-LEKTGTI 223
             +  S  G  +F    V    A  T +   HL     +E    AKA +FE  + +    
Sbjct: 179 LAMEASSHGLDQFRLDGVLVTCAGFTNLTRDHLDYHRTMEAYFQAKATLFERVMPQGAVA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LN D   FE L A   +     I      +  +  L   +       +E+++ G    +
Sbjct: 239 VLNADTPQFEALAALCRSRKQTVIGY--GERGRELALHSARPLPHGQQVEIEVFGTRHSL 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N L  LG+V     D   A   L+      GR        N      +D
Sbjct: 297 ELPLVGNFQLWNALCALGLVIGSGEDPAAATAQLARLEGVRGRLDLVARLKNGA-AVYVD 355

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +         VL  + PH  GR +AV G     G         L   +       
Sbjct: 356 YAHTPDGLET-----VLKALRPHTVGRLVAVFGA----GGDRDPGKRPLMGEVVARLADR 406

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS------LVDGDVVVVKS 451
             ++  +  +   A+ R+  +        +    ++       L  GDV+VV  
Sbjct: 407 AIVTDDNPRSEVPAVIRAAILAACPDATEIGDRAEAIEAAIAGLEQGDVLVVCG 460


>gi|325684938|gb|EGD27082.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 516

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 124/469 (26%), Gaps = 65/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR +     FF  KG    G    ++  A + GA   V             +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGA---GFRPTYLTMAKENGAIAYVAEQPYPE---GTGMHALI 86

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------- 138
           V +V  A+  L+ A     +    ++  TG+ GKTT+   L   L  +            
Sbjct: 87  VRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVD 146

Query: 139 ------CIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                    ++ + +  P +      M   VD G+  + M  S     +     +   + 
Sbjct: 147 NILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+        E+    K ++     K          +        +      
Sbjct: 207 FFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++    +N D +               + K     +  +      S E     IG   
Sbjct: 267 YLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +     +   K +                  Q    ++ +  +     
Sbjct: 327 ETNATGAIIGAGLAGMSYEDCAKGIRHVTIPGR----METVTTQKHGLIVVDYAHNK--- 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G 408
                 +          R I V+G   + G   +    +             +L+    G
Sbjct: 380 ASMLALMRFMRREFTNPRIIVVVGAPGDKGISRRQGFSESL----TAEADKAYLTTDDPG 435

Query: 409 -FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
             +   + + +   I     E       +       S     DVV++  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCG 484


>gi|148259079|ref|YP_001233206.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|326402230|ref|YP_004282311.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
 gi|146400760|gb|ABQ29287.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidiphilium cryptum JF-5]
 gi|325049091|dbj|BAJ79429.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Acidiphilium multivorum AIU301]
          Length = 481

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 76/446 (17%), Positives = 131/446 (29%), Gaps = 31/446 (6%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
            P+   +GI+ DSR++     F A+ G   DG DFI  AV +GA  V+  +      G  
Sbjct: 16  PPETVFSGITADSRAVRKGMIFAALPGARADGRDFIAQAVAQGAAAVLAPSGTRWPPGVP 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS--------- 132
             P+    +    L ++A         TI+ +TG+ GKT+T + +     +         
Sbjct: 76  PRPLIEDPEPRRRLAEIAATLAGPLPETILGVTGTNGKTSTVDFIRQMAVASGRPAASLG 135

Query: 133 -----IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                                    +         G   L  S  G  +F  H +R    
Sbjct: 136 TLGLIAPGFAPGASLTTPDPVTLSDILAALRAAGIGTVALEASSHGLDQFRLHGLRLAAG 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             + +   HL     +     AK  +F+ L   G   +   D   + L A       + +
Sbjct: 196 GFSNLTRDHLDYHGDMASYRRAKLRLFQDLLLPGAPAVAMADLEPDTLAALRDIAQARRL 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                    D    +    +  S   + +    +            Q     L       
Sbjct: 256 DLATVGAGGDLFDLRGIIATP-SSQVLTIACGGVSREIELPLPGRFQVDNALLAAGLARA 314

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A V   +  L    P  GR +R     N         +Y     +  A   +L  + PH 
Sbjct: 315 AGVSDPLDRLPGLAPVRGRLERAAVLPNGAA------AYVDYAHTPDALERLLMALRPHA 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI 422
            GR + V G     G         L   ++        ++          +++ A+  + 
Sbjct: 369 AGRLVLVFGA----GGDRDRGKRKLMGDVAARLADVAIVTDDNPRSEDPASIRAAILAAC 424

Query: 423 HV-HYSETMDGLFLFIQSSLVDGDVV 447
                             +L  GDV+
Sbjct: 425 PGAREIGDRRAAIAAGLDALRAGDVL 450


>gi|238026127|ref|YP_002910358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
 gi|237875321|gb|ACR27654.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia glumae BGR1]
          Length = 515

 Score = 88.0 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 79/458 (17%), Positives = 156/458 (34%), Gaps = 51/458 (11%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKGAGLVVVNTDMVASIGSLSIPV-FGV 88
           D+RS+   + F A      DG D    + +A+ +GA  V+V  +  A I +L   V   V
Sbjct: 34  DTRSLRAGDVFLAYA---VDGADNRPHLANALSRGAAAVLVQPEGYAGIDALDPAVALAV 90

Query: 89  DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             +     ++A            +I +TG+ GKT+  + +  AL+++++  A IG+  + 
Sbjct: 91  PGLDALAGEIASGWYGDPSDAMFVIGVTGTNGKTSCTQWIATALTALRRPCAVIGTLGSG 150

Query: 147 I---------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +                +  +LA++  D    +     SH      +       +AV T 
Sbjct: 151 MPGRLVATGFTTPDAPQLQRSLAQLRDDGAQAVAMEVSSHALHQGRVNGTA-FDVAVFTN 209

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      E   +AKA++F        I    D +   LL       G     ++G
Sbjct: 210 LTQDHLDYHRTFEAYEAAKAKLFAWRGLRHAIINRDDAAGGRLLA---TLAGRVRTVAYG 266

Query: 252 KSKNADFQLRKWKQCSE-------QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               AD         +         +   +       ++    +G     N+L  L  + 
Sbjct: 267 IGARADAPEADRTLIASEVRATATGTAFRLTSSWGDADLEVGTLGLFNVSNLLAVLATLL 326

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     D A+  +       GR +R    ++     ++ + Y   P +++  +  L  I+
Sbjct: 327 VADLPFDAALAEMRRLESVNGRMQRLGGRIDHDEPLVVVD-YAHTPDALEKTLEALRPIA 385

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALP 419
               G  + + G     G    +    L   ++      V ++  +       A+ + + 
Sbjct: 386 EARGGALVCMFG----CGGDRDTTKRPLMGAIAERLADRVVVTSDNPRSEAPLAIIEQIA 441

Query: 420 RSIH----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +H        E      L         DVV++  K 
Sbjct: 442 SGMHAPDGALRIEDRASAILQAVRGAAREDVVLLAGKG 479


>gi|81427895|ref|YP_394894.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564766|sp|Q38YZ5|MURE_LACSS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|78609536|emb|CAI54582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 513

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 73/473 (15%), Positives = 134/473 (28%), Gaps = 51/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           +       + GI+ DSR +     FF  KG ++      F+ +A + GA   V    +V 
Sbjct: 23  LNGDSNLNMTGIAYDSRKVTADTLFFC-KG-NF---RPVFLTNAKEAGAVTYVAEQPIVE 77

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V +V  A+  L+ A     +    I+A TG+ GKTT        L    
Sbjct: 78  GNG---MNALIVTNVQKAMAVLSAAFYDYPQDDLFIVAYTGTKGKTTASYFTQSILQDAT 134

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
                + S  + +  P    R            +  D+   + E GM+HL          
Sbjct: 135 NKKTALFSTIDRVLGPKPEDRFKSDLTTPESLDLFHDMRQAV-ENGMTHLVMEVSSQAYK 193

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +         +     I+P H+        E+    K ++                +F +
Sbjct: 194 KNRVYGLTFDVGFFLNISPDHVGPNEHPNFEDYLHCKLQLLVNSRHCVINAQ--TQNFGD 251

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           +  A +     + IY F  +     Q        E   M +      +  V         
Sbjct: 252 VYAAATTTTEPENIYLFADTSYQPAQPVNIDFRFENQAMTLAESRFKVTAVSKKAIQLGV 311

Query: 294 QNMLMTLGIVSILTADVDTAIKALS--VFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                   I     ++   AI   +         +    R  +     TL  E +     
Sbjct: 312 SGDYQLRLIGDFNESNATAAIIGAALGGADLIAAQQGIRRLQIPGRMETLAVEGHGQVYV 371

Query: 352 SMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
                 + +  +    +       +L  +   G+   S     A+VL+ Y    +  +  
Sbjct: 372 DYAHNYASMKALLSFLQKEYNQPKLLVVVGSPGDKGVSRRAGFAQVLNEYADRAILTTDD 431

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   +   I     +                    GD+VV+  K 
Sbjct: 432 PGYEDPATIAAEILAGIDQDKVDTTVEIDRATAIKQAIEESQPGDIVVLAAKG 484


>gi|330813730|ref|YP_004357969.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486825|gb|AEA81230.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 155

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 68/121 (56%), Gaps = 1/121 (0%)

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           DESYNANP SMK AI   S  + H + + IA++GDM E+G+ S+ +H+++A++L+   I 
Sbjct: 34  DESYNANPISMKNAIENFSLFNSHKKKK-IAIIGDMLELGQKSKFYHLEVAKILNKAEID 92

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            ++L G  V+ + + L ++     S+ +            +  + ++K SN  G  +L+N
Sbjct: 93  EIYLVGKEVVHIYNQLKKTKTCFISKDIVHFKSLFLKIANEKSIFLIKGSNGIGLNKLVN 152

Query: 463 L 463
            
Sbjct: 153 Q 153


>gi|148907754|gb|ABR17003.1| unknown [Picea sitchensis]
          Length = 583

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +    +I+++YNANP SM AA+ +L  I    +GRR+A+LGDM E+G+  +  H+D+ +
Sbjct: 448 CKNKIRIINDAYNANPVSMVAALELLHSI--DCKGRRVAILGDMLELGKFGKKAHLDVIK 505

Query: 395 VLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     I  V ++G      + + D       V  +   + L   I      GDVV+VK 
Sbjct: 506 LCLELGIELVGIAGLQFMEAIKVADLTSAEFSVISALDSESLASQIGKKFTAGDVVLVKG 565

Query: 452 SNSCGFYRLINLLL 465
           S       +++++ 
Sbjct: 566 SRGMRMEVIVDVIR 579


>gi|326382555|ref|ZP_08204246.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326198674|gb|EGD55857.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 689

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 75/482 (15%), Positives = 141/482 (29%), Gaps = 50/482 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L         G      V+G ++ ++       F A+ G    G ++   A   GA 
Sbjct: 24  LSALAAGFGLELHGDDRD--VSGATLRAQDAGAGYLFAALPGDRTHGANYAAQARAAGAA 81

Query: 67  LVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
            V+ +   +        +  + V         L  ++        S+ T+I ITG+ GKT
Sbjct: 82  GVLTDPAGLALIREDPEAADVTVLVHARPREVLGAVSARIYGDPSSRLTLIGITGTSGKT 141

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---VP-------------LTLARMPVDVDFGI 164
           TT  +   AL +  +    +G+    +    VP             +        VD  +
Sbjct: 142 TTAYLAEAALRAAGRVVGLVGTVEIRVDGTVVPSSLTTPEAPDLQRMFAVMAERGVDTVV 201

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+  SH   +  +       +   T ++  HL     ++E  +AKA +FE    T    
Sbjct: 202 MEV-SSHALALGRVDGCH-FAVGGFTNLSQDHLDYHRTMDEYFAAKARLFEAGSPTRARQ 259

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                      +A   A           +             ++     V + G      
Sbjct: 260 AAVCVDDVWGRRAADVAAQGAATPITVSTTGPADWSVVRTVRTDAGSQTVLIAGPDGAET 319

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +    A N+   L  V++  A       A++        G+  +    Q F  ++D 
Sbjct: 320 EMTVPLPGAYNVANALLAVAMTVAAGTDVDTAVAGLAHVAVPGRLEKVERGQEFLAVVDY 379

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++            VL+ +     GR   VLG     G    +    L    +      V
Sbjct: 380 AHKPAAVEA-----VLATLGAQTRGRLAVVLGA----GGDRDTEKRPLMGAAAARGADLV 430

Query: 405 WLSGFHVL-----ALKDALPRSIH--------VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            ++  +        ++ A+             +                   GDVV++  
Sbjct: 431 IVTDDNPRSEPPADIRAAVLAGARSVDAARGEIREIGDRRDAIAAAVDWARPGDVVLIAG 490

Query: 450 KS 451
           K 
Sbjct: 491 KG 492


>gi|160933543|ref|ZP_02080931.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
 gi|156867420|gb|EDO60792.1| hypothetical protein CLOLEP_02394 [Clostridium leptum DSM 753]
          Length = 492

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 85/476 (17%), Positives = 152/476 (31%), Gaps = 51/476 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             DLL+ +    +    Q  VN +  DSR + P   F  + G   D H +   AV+ GA 
Sbjct: 6   LKDLLEGVGYKCLQGDDQVLVNDVVYDSRRVRPGCVFVCLIGSAVDSHQYAAQAVEAGAA 65

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKE 124
            VV +  +  + G     +  V+D   A+  ++ A       K   + ITG+ GKTTT  
Sbjct: 66  AVVASRQLELAKG----TLVLVEDTRKAMAYMSAALFGHPAAKLKTVGITGTKGKTTTAC 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVP----------------LTLARMPVDVDFGIFELG 168
           M+   L         IG+    IG                       +       + E  
Sbjct: 122 MIKTILEKGGIKTGVIGTLGVIIGDTTYPTNNTTPESYDVQKYLNQMVEEGCQCAVME-- 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            S LG     T  +     V T  +P H+     S +EE A+ K  +F+  +      +N
Sbjct: 180 ASSLGLKWHRTDGLVFDYGVFTNFSPDHIGENEHSCLEEYAACKGLLFQSCK---LGLVN 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E +            +S  +++          +               + V   
Sbjct: 237 IDDPACETILKDHTCELETFGFSNPQAQLKGSNEGLIYRPGYLGAHFDVSGAMKLSVDVD 296

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N +  + +           +  L+          R       G +TL+ + Y
Sbjct: 297 IPGKFSAYNAIAAIAVCRHFPVSEQNILDGLNEVK----VKGRVEPVKVPGNYTLLID-Y 351

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  SM+  ++ L +  PH       ++      G  ++S   ++ EV        V  
Sbjct: 352 AHNAVSMENILTTLREYQPHR------LVCMFGAGGNRAKSRRYEMGEVSGRLADLTVIT 405

Query: 407 --------SGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +  ++  + ++               +   +  + D+VV+  K 
Sbjct: 406 EDNSRFENVMDIIQDIQTGMAKTQGKSIVIPNRRDAIRYCIENAQEHDIVVLAGKG 461


>gi|330973391|gb|EGH73457.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 137

 Score = 87.6 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 61/125 (48%), Gaps = 7/125 (5%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID++YNANPAS+ AA+ +L+  +    GR + VLGD+ E+G+ ++  H ++    +  
Sbjct: 12  RVIDDTYNANPASINAAVDILTGFT----GRTVLVLGDIGELGDWAEQGHREVGAHAA-G 66

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +S ++  G  +     A     H ++  +   L   + +       +++K S S     
Sbjct: 67  KVSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQDSDTTLLIKGSRSAAMEH 124

Query: 460 LINLL 464
           ++  L
Sbjct: 125 VVAAL 129


>gi|840843|emb|CAA58873.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas aeruginosa PAO1]
          Length = 325

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 16/214 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DS  + P + F  + G H DG   I  A+ KGA  V    +    +     
Sbjct: 15  DLLIRELTLDSHGVRPVDLFLTVPGGHQDGRAHIADALTKGATAVAYEAEGAGELPPSDA 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  +   L+ +A            +I +TG+ GKT+  +++  AL  + +    +G
Sbjct: 75  PLIAVKGLAAQLSAVAGRFYGEPSRGLDLIGVTGTNGKTSVSQLVAQALDLLGERCGIVG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R        +                + +S  G  +     +   IA
Sbjct: 135 TLGTGFYGALESGRHTTPDPLAVQATLATLKQAGARAVAMEVSSHGLDQGRVAALGFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           V T ++  HL     +E  A+AKA++F   +   
Sbjct: 195 VFTNLSRDHLDYHGSMEAYAAAKAKLFAWPDLRC 228


>gi|319745329|gb|EFV97644.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus agalactiae ATCC 13813]
          Length = 484

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 61/429 (14%), Positives = 126/429 (29%), Gaps = 36/429 (8%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               N +S DSR I+    FFA KG  +   +++  A+  G    V   D  A      I
Sbjct: 33  NVTFNALSYDSRQISSDTLFFA-KGATFK-KEYLDSAITTGLSFYVSEIDYGA-----DI 85

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV  V+D+  A++ ++++     ++K  ++A TG+ GKTT        L    +      
Sbjct: 86  PVILVNDIKKAMSLISMSFYNNPQNKLKLLAFTGTKGKTTAAYFAYHMLKVNHRPAMLST 145

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
                 G     + +       +F +  + +        +     A +T         + 
Sbjct: 146 MNTTLDGKSFFKSHLTTPESLDLFRMMATAVENQMTHLVMEVSSQAYLTK------RVYG 199

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
              ++        + +                LL   S+A+ + +            +  
Sbjct: 200 LTFDVGVFLNISPDHIGPIEHPTFEDYFFHKRLLMENSNAVVVNSQMDHFNIVKEQVEYI 259

Query: 262 KWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                 + S   +                 + I      N    +           +   
Sbjct: 260 PHDFYGDYSENVITESQAFSFHVKGKLENTYDIKLIGKFNQENAIAAGLACLRLGVSIED 319

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +        G+        G    +D ++N +         +L+ +  H +G  I VL
Sbjct: 320 IKNGIAQTTVPGRMEVLTQTNGAKIFVDYAHNGDS-----LKKLLAVVEEHQKGDIILVL 374

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIH--VHYSE 428
           G     G+  +    D  +V++ +    V L+         L +   +   I+  V    
Sbjct: 375 GAPGNKGQSRRK---DFGDVINQHPNLQVILTADDPNFEDPLVISQEIASHINRPVTIII 431

Query: 429 TMDGLFLFI 437
             +      
Sbjct: 432 DREEAIANA 440


>gi|227543129|ref|ZP_03973178.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181117|gb|EEI62089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 507

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 136/486 (27%), Gaps = 55/486 (11%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   +     G        P   V+ I+I+     P   F A+ G    G  F   +   
Sbjct: 4   TIERIATECAGELHLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKFAGSSQ-- 61

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            A  +V +      + +     PV   DD+   L  ++           T+I ITG+ GK
Sbjct: 62  -AAAIVTDKPGYEILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177
           TTT  M+   L++   T   IG+    I G  +  +    +        L M   G    
Sbjct: 121 TTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHV 180

Query: 178 LTHLV------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +                IA+ T ++  HL     +E+    KA++F           
Sbjct: 181 VMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAKKS 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    +     A    T  S   +           +    S   V  +GK   V  
Sbjct: 241 IICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRVTL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G     N  + +   +    DV T I  L+                N      + + 
Sbjct: 301 HIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGR----MEKIDNDKGVLAVVDY 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A      + +  +    EGR IAV G     G         +    ++     V 
Sbjct: 357 AHKPAA----LEAAIKAVRDEVEGRVIAVFGA----GGDRDHGKRPIMGSAAVAGADVVI 408

Query: 406 LSG-----FHVLALKDALPRSIHVHYSE-------------TMDGLFLFIQSSLVDGDVV 447
           ++           ++ A+                                 +    GD +
Sbjct: 409 ITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAI 468

Query: 448 VV--KS 451
           +V  K 
Sbjct: 469 IVAGKG 474


>gi|187925447|ref|YP_001897089.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia phytofirmans PsJN]
 gi|187716641|gb|ACD17865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia
           phytofirmans PsJN]
          Length = 515

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 82/483 (16%), Positives = 154/483 (31%), Gaps = 55/483 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQK 63
             D L  +  H            +  D+RS+A  +AFFA      DG D   FI  A+++
Sbjct: 14  IADALAWLHAHVRPGA------HLHADTRSLAAGDAFFAYA---VDGADNRPFIEGAIER 64

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTT 121
           GA  V+V  +  +     S     V  +      +A             + +TG+ GKT+
Sbjct: 65  GAAAVLVQPEGFSGAIDPSNT-LAVPALNELAGSIASGWYNDPSDSMLTLGVTGTNGKTS 123

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IF 165
             + ++ AL+++    A IG+  +  G+P  L                            
Sbjct: 124 CSQWISAALTALGTRCAIIGTLGS--GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 181

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     IAV T +   HL      E   +AKA +F   +    +  
Sbjct: 182 AMEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPDLRAAVIN 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL------RKWKQCSEQSWMEVQLQGK 279
             D +   LL +                ++A                +  ++        
Sbjct: 242 RDDAAGRRLLASTQGHARTIAYGLDDTLQDAPKADALLLASNVRATATGTAFHLSTSDWG 301

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           + EV    +G     N+L  LG +       + A+  L+      GR +R    L     
Sbjct: 302 NAEVEVQTLGAFNVSNLLGVLGALLAADVPFNAAVAELAKLESVNGRMQRLGGRLQNDEP 361

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P +++  +  L  ++    G  I + G     G    +    L   ++  
Sbjct: 362 LVVID-YAHTPDALEKTLEALRPMATARGGELICMFG----CGGDRDATKRPLMGAIAEK 416

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +  +         +   +  +      E      L    S    DV+V+ 
Sbjct: 417 IADGVVVTSDNPRSEDPQAIIEQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVLA 476

Query: 450 -KS 451
            K 
Sbjct: 477 GKG 479


>gi|168491578|ref|ZP_02715721.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574296|gb|EDT94824.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 481

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGVDCYQIIQGKKESYP 471


>gi|259502140|ref|ZP_05745042.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
 gi|259169953|gb|EEW54448.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus antri DSM 16041]
          Length = 516

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 84/504 (16%), Positives = 145/504 (28%), Gaps = 77/504 (15%)

Query: 2   NPLWTF---HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            P  T    H LL          +       ++ DSR +     FF  KG      +F+ 
Sbjct: 6   TPALTLLREHHLLDHTN-----KLTDFTATSVAYDSRKVTAGTLFFC-KG------NFLP 53

Query: 59  H----AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIA 112
                A ++GA   V   +         +P   V D   A+  L  A     + + TIIA
Sbjct: 54  KYLTMAREQGAVAYVAEQEYPE---GGDLPAIIVKDEQEAMALLGAAFYGFPQDELTIIA 110

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTY-------------ACIGSYNNHIGVP-----LTLA 154
           ITG+ GKTTT  M    L      +                  + + +  P         
Sbjct: 111 ITGTKGKTTTAYMADHILGRATDQHVALFSTLDRVLGNRPADRFKSDLTTPESLDLFHDM 170

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
           R  VD       + +S     +  T+ +   I +   I+P H+         +    K +
Sbjct: 171 RAAVDNGMTHLVMEVSSQAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQ 230

Query: 213 IFEGLEKTGTIFLNYD------------DSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           +                                 L A+  A       +    +  +   
Sbjct: 231 LLVNSGICLINAETAHLTDVYYTAKATTQPENIYLFARHGAAVQLPDGAAIDFEYRNDLE 290

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   E +    + Q   ++  +                ++S   A    A    ++ 
Sbjct: 291 DLHESEFELAACSPKAQQLGIQGRYKTSVPGDYNEGNAVAAVISTALAGATAADAVATLD 350

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H       R      +   T+  + Y  N AS+K  ++ L        G+   VLG    
Sbjct: 351 H--VHIKGRMEMQKTRQHGTIYID-YAHNYASLKRLLAFLK--RQTAAGKVTVVLGA--- 402

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS----G-FHVLALKDALPRSIH------VHYSET 429
            G+   S      + LS  +   + L+    G    + +   +   I       V Y   
Sbjct: 403 TGDKGISRRQGFGKALSEEHPDQIILTTDDPGFEDPMKIAREINSHIDHDQVGAVQYIMD 462

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                     S  +GD+VV+  K 
Sbjct: 463 RPTAIKAAIDSSSNGDIVVLAGKG 486


>gi|227488524|ref|ZP_03918840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091418|gb|EEI26730.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 507

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 80/486 (16%), Positives = 136/486 (27%), Gaps = 55/486 (11%)

Query: 6   TFHDLLQAIQGHSI--GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   +     G        P   V+ I+I+     P   F A+ G    G  F   +   
Sbjct: 4   TIERIATECAGELHLRQGSPDLEVSHIAINGADARPDGLFAAVAGTRSHGAKFAGSSQ-- 61

Query: 64  GAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            A  +V +      + +     PV   DD+   L  ++           T+I ITG+ GK
Sbjct: 62  -AAAIVTDKPGYEILKTAGETRPVIVFDDLRAHLGAVSALVCGNPSACMTVIGITGTSGK 120

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIF-ELGMSHLGEIRF 177
           TTT  M+   L++   T   IG+    I G  +  +    +        L M   G    
Sbjct: 121 TTTSYMMEAGLAAAGATVGLIGTTGTRIAGKKVPTSLTTPEAPTLQELFLTMRDAGVTHV 180

Query: 178 LTHLV------------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           +  +                IA+ T ++  HL     +E+    KA++F           
Sbjct: 181 VMEVSSHAIALGRVGGVDFDIALFTNLSQDHLDFHPTMEDYFHTKAKLFVPGSPLRAKKS 240

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    +     A    T  S   +           +    S   V  +GK   V  
Sbjct: 241 IICVDDKWGVDLTRLAGPAATTVSTKGAPANFMATDIETEPDGTSQFTVAYKGKKQRVTL 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G     N  + +   +    DV T I  L+                N      + + 
Sbjct: 301 HIPGVFNVANASLAIAAAAFTDLDVRTFIAGLANIQVPGR----MEKIDNDKGVLAVVDY 356

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A      + +  +    EGR IAV G     G         +    ++     V 
Sbjct: 357 AHKPAA----LEAAIKAVRDEVEGRVIAVFGA----GGDRDHGKRPIMGSAAVAGADVVI 408

Query: 406 LSG-----FHVLALKDALPRSIHVHYSE-------------TMDGLFLFIQSSLVDGDVV 447
           ++           ++ A+                                 +    GD +
Sbjct: 409 ITDDNPRSEDPATIRKAIEDGAKEFVVSHPSRRSVEICNVGDRGQAIALAVNKSQAGDAI 468

Query: 448 VV--KS 451
           +V  K 
Sbjct: 469 IVAGKG 474


>gi|289447785|ref|ZP_06437529.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420743|gb|EFD17944.1| phospho-N-acetylMuramoyl-pentapeptidetransferase MurX
           [Mycobacterium tuberculosis CPHL_A]
          Length = 301

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 72/299 (24%), Positives = 116/299 (38%), Gaps = 26/299 (8%)

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  + PAHL  F   E IA  KAE+ + +  +G + LN DD     +   + A  ++   
Sbjct: 1   MLNVGPAHLGEFGSREVIAQTKAELPQAVPHSGAVVLNADDPAVAAMAKLTAARVVRVSR 60

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                  A             +      Q    EV     G H   N L    +     A
Sbjct: 61  DNTGDVWAGPVSLDELARPRFTLHAHDAQA---EVRLGVCGDHQVTNALCAAAVALECGA 117

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS--PH 366
            V+    AL+   P      R +        T+ID++YNANP SM+A +  L+ I+  P 
Sbjct: 118 SVEQVAAALTAAPPV--SRHRMQVTTRGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPE 175

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----------------- 409
              R  AVLG+M E+GE + + H  +  +    ++S + + G                  
Sbjct: 176 ATRRSWAVLGEMAELGEDAIAEHDRIGRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAW 235

Query: 410 -HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               A  D       V+     D     +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 236 GSGEATADHGADRTAVN-VADGDAALALLRAELRPGDVVLVKASNAAGLGAVADALVAD 293


>gi|325109906|ref|YP_004270974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
 gi|324970174|gb|ADY60952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Planctomyces brasiliensis DSM 5305]
          Length = 504

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 69/470 (14%), Positives = 126/470 (26%), Gaps = 69/470 (14%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA----------GLVVV 70
                    I+  SRS   Q  F A+ G H           ++GA            ++ 
Sbjct: 25  GNANIVFRDIATHSRSCNRQTLFVALSGSHR----------EEGAYLRQAAAQGAAGILT 74

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRSKATIIAITGSVGKTTTKEMLTI 128
           +      +  L+ P   V +V      L  +   R   +     +TG+ GKTT   ML  
Sbjct: 75  D----FPLSDLATPQCIVPNVRRTYGLLCQSLAGRPAEQLRTFGVTGTNGKTTVTWMLRS 130

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM---------------SHLG 173
            + +  +    +G+     G            D  +    M               S   
Sbjct: 131 IVKAANENCGLLGTIEYSDGCHTPEPATLTTPDAAVTAQWMRRMVQAGATAAAIEVSSHA 190

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             +     V     +IT I   HL     + + A  KA I   L+    + +N DD    
Sbjct: 191 IDQDRLSGVSLAGGIITNITHDHLDYHGSLSKYAEVKARIANLLQDDAPLVVNGDDCNIR 250

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L             + G  K   +++   +Q  + +   +    +   +     G H  
Sbjct: 251 NLLPHL----PPETITVGFDKRNSYRIEIQEQTLQGTAFRLSPGTEGAVLRCPVPGRHNV 306

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N      +       +++    L+   P  GR +          F     + +A     
Sbjct: 307 YNAAFAAVLAQAAGYSLESISAGLASLVPPPGRLQPVETCQPFSCFVDYAHTPDA----- 361

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL- 412
                 L  +    +GR I + G     G              +      V L+  +   
Sbjct: 362 --IAQTLQSLRSVTKGRLICLFGA----GGERDREKRPRMARAAEQA-DIVVLTADNSRR 414

Query: 413 --------ALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV--KS 451
                    ++     +    +                  GD V++  K 
Sbjct: 415 EPTAQILEEIQAGFSDAAPEVFVNADRSQAIQLAVKLAEPGDCVLILGKG 464


>gi|260905300|ref|ZP_05913622.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Brevibacterium linens BL2]
          Length = 520

 Score = 87.2 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/465 (14%), Positives = 141/465 (30%), Gaps = 43/465 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                LL A  G   G  P+  V G+S DSR+++P + + A+ G +  G  F    +++G
Sbjct: 1   MRISQLLPAAPGTVHG-DPEREVGGVSHDSRTVSPGQLYAALPGANVHGAKFAPDLMERG 59

Query: 65  AGLVVVNTDMVASIGSLSIPV-------FGVDDVLGALNKL-AVAARLRSKATIIAITGS 116
              ++ +      I +   P          V+     L  + A          +I +TG+
Sbjct: 60  ITAILTDAAGWDMISAAVDPQTLAEVTGLIVEHPRSVLGFVSAAVYGTSVSPQLIGVTGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDFG------------ 163
            GKTTT  ++   L ++      IG+    I GV     R   +                
Sbjct: 120 NGKTTTTYLVDGMLEALGHRTGVIGTVATLIAGVREPSVRTTPEAPELHALFAKMRAADV 179

Query: 164 -IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +         ++  T ++  HL   + ++E    KA++F        
Sbjct: 180 DTCAMEVSSHALSQHRVDGAHFAVSGFTNLSQDHLDFHNSMDEYFDVKAQLFTRTFSDAA 239

Query: 223 IFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           + +  D    +++  A+     +               +  +      S  E       +
Sbjct: 240 VIVVEDRWGEKMVEAAQVPVRTLGRDDRSELRIEHTPGVSDFILHLGGSADETIALRSPL 299

Query: 282 EVVHHGIGYHMAQNMLMTLGIV----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               +     +A  ML+  GI     + +      ++          G     +    + 
Sbjct: 300 PGDFNVTNTALAAAMLLEAGIAVSDLNAIGRTFSASVPGRMEIIDVSGPRAEGQTHPERL 359

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D S+  +          L+ +    E   + V G     G              +
Sbjct: 360 PRAIVDYSHTPDAIE-----KALASLHADSE-ELVIVFGA----GGDRDRGKRYGMGQAA 409

Query: 398 LYNISHVWLSGFHVL-----ALKDALPRSIHVHYSETMDGLFLFI 437
                 + L+  +        ++ A+   I    S     +   I
Sbjct: 410 ARGADVIVLTDDNPRTEDPNLIRAAIREGIDAEISNGRARVKKVI 454


>gi|28572693|ref|NP_789473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diami nopimelate ligase
           [Tropheryma whipplei TW08/27]
 gi|46577004|sp|Q83HJ9|MURE_TROW8 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|28410825|emb|CAD67211.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei TW08/27]
          Length = 509

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 137/477 (28%), Gaps = 38/477 (7%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 8   YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQVQ 67

Query: 62  QKGAGLVVVNTDM-----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
                 V+ +           + + S P+   D     L  LA          I  ITG+
Sbjct: 68  S--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 125

Query: 117 VGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPV---------DVDFGI 164
            GKT+T  +       +         IGS  +     LT   +                 
Sbjct: 126 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 185

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F L  S     R     +   +A  T + P H+     +E    AK  +F        + 
Sbjct: 186 FALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLNKRSNSAVI 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    L K    +  + +  + +G      +Q    +      +  +   G  +E 
Sbjct: 246 NIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSGYRVES 305

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N  M + I+  L  D++     L      +            G    + 
Sbjct: 306 SISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGNSPRVI 365

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +     +++ A+     I+         ++  +   G+   S    L ++   Y+   
Sbjct: 366 VDHGHTVDAVETALVAAKSITRGR------LITIINADGQRDPSKRKHLGQLCGAYSDKL 419

Query: 404 VWLSG----FHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               G     +   ++  +          V    +M    L         D V+   
Sbjct: 420 FITDGHSRFENPAEIRRMILDGVEGPRKQVEQIPSMTQAVLAAIDIAKSDDTVLCSG 476


>gi|150026097|ref|YP_001296923.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772638|emb|CAL44121.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Flavobacterium
           psychrophilum JIP02/86]
          Length = 443

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 126/406 (31%), Gaps = 52/406 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +V  +   +IPV          +++   A   + A  I ITGS GKTTT  ++   L  
Sbjct: 76  PIVKKLKEKNIPVI---------SEIEFTA-PFTNAKTIGITGSNGKTTTTMLVYHLLKQ 125

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        +IG            DF + EL    L          +PHIA+IT I
Sbjct: 126 GGLNV----GLAGNIGKSFAWQVSEDTHDFYVLELSSFQLD----GIQKYKPHIAIITNI 177

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +P HL  +    E+   +K  I     +   +  + DD         +        +S  
Sbjct: 178 SPDHLDRYDYQYEKYIESKFRITMNQTEEDYLIYDADDQAINNWLKNNKTKAQLVPFSLT 237

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           K           +  +  +                  G H  +N L    +  +L     
Sbjct: 238 KQFEFGAY----EANNNININTNNDPFVMQTSELSLEGKHNVKNALAATSVAQLLKIRKA 293

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           T  ++L+ F   E R       L       I++S   N  +   A+  ++  +    G  
Sbjct: 294 TIRESLADFQGVEHRL---EKVLKIQNVQYINDSKATNVNATFYALDSMTSPTIWIVG-- 348

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETM 430
                     G    + + +L E+++  N+  +   G     + DA    +  +    TM
Sbjct: 349 ----------GVDKGNDYSELMELVNK-NVKTIICLGVDNKKIIDAFSNVVDELIEVSTM 397

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                        GD V++    +S             F + +  L
Sbjct: 398 TDAVRQAYKMAEKGDTVLLSPACASFDLFENYEDRGRQFKQAVQNL 443


>gi|149003251|ref|ZP_01828147.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|169832669|ref|YP_001694935.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae Hungary19A-6]
 gi|237650212|ref|ZP_04524464.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974]
 gi|237820905|ref|ZP_04596750.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758711|gb|EDK65708.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP14-BS69]
 gi|168995171|gb|ACA35783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae Hungary19A-6]
          Length = 481

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVVFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471


>gi|328464396|gb|EGF35805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus MTCC 5463]
          Length = 523

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/467 (13%), Positives = 118/467 (25%), Gaps = 61/467 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+         +    K ++     K          +          A    
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYA-----AATTTT 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S       DF+    K   +  +   +L  K              +  +     + +
Sbjct: 262 NPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKM 321

Query: 306 LTADVDTA------------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           L    ++             +                R    +     +     A+  + 
Sbjct: 322 LGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRMQTERTKNHGMVVVDYAHNKAS 381

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
             A+    Q   +     + V       G+   S     +E LS Y       +      
Sbjct: 382 MMALMNFMQSEFNNPKIIVVV----GAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 437

Query: 410 HVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
              ++ + +   I     +               +     DVV++  
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICG 484


>gi|261414980|ref|YP_003248663.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371436|gb|ACX74181.1| UDP-N-acetylmuramyl-tripeptide synthetase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326475|gb|ADL25676.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 473

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 75/460 (16%), Positives = 140/460 (30%), Gaps = 48/460 (10%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
           G++ +  V G+  DSR + P   FF+I    Y        A  + A        +  ++ 
Sbjct: 5   GLMQKLSVTGLCDDSRRVKPGNLFFSIPAEGY-------EAFARSAIAAGAVAVVGETMA 57

Query: 80  SLSI--PVFGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKK 135
              +      V DV  A  + A        + +I  AITG+ GKTT+  ++   L +  +
Sbjct: 58  PEGLTSKWIQVPDVKAARLEAAKIFYKDPFSKLICHAITGTNGKTTSAFLMNAMLEAEGR 117

Query: 136 TYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHL 181
             A +G+  N IG            L  +       + E      +  S     +     
Sbjct: 118 KTALLGTIKNKIGDKSVPASLTTPGLLDLYEFASRAVAEGCTDLVMEASSHSLHQGRVAG 177

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +R    + + +   HL     ++    AK  +F        + +   D         +  
Sbjct: 178 IRFRSGLFSNLTQDHLDYHKTMDAYFEAKKLLFTKYLAENGVAVINIDDAHGEKLFNALD 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +   GK   AD +     + +E           + +      G     N+L+ L 
Sbjct: 238 CRKVAVSRLGK-AKADVKPFGEIKSTEDGLEFTLPMIATDKFETPLCGDFNVDNLLLVLA 296

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L    D   KA+         G+  +     G   ++D ++  +         VL+
Sbjct: 297 WAHALCVPEDAMRKAI---TTVRVPGRFEKVWSKDGKHVIVDYAHTPDALE-----RVLN 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALK 415
                  G+   V G     G         +   ++       WL+  +         + 
Sbjct: 349 VARSLCRGKLSTVFG----CGGDRDKTKRPIMGGIAERIADKAWLTSDNPRTEKPADIIA 404

Query: 416 D--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           D  A   +      E  +       + L  GD +V+  K 
Sbjct: 405 DVRAGMTTDKFEVVENREEAINRACAELKSGDWLVIAGKG 444


>gi|146305952|ref|YP_001186417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
 gi|167017296|sp|A4XQR9|MURE_PSEMY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145574153|gb|ABP83685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas mendocina ymp]
          Length = 487

 Score = 87.2 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 154/454 (33%), Gaps = 41/454 (9%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
             +  +++DSR + P + F A+ G   DG   I  AV +GA  V    +  A + + S  
Sbjct: 16  VLIRELTLDSRKVRPGDLFLAVPGTQQDGRVHIADAVARGAAAVAFEAEGAAPMHAESAV 75

Query: 85  VFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           +  V  + G L+ +A            +I +TG+ GKT+  ++L  AL  + +    +G+
Sbjct: 76  LVPVKGLAGQLSAIAGRFYGEPSRALHLIGVTGTNGKTSVSQLLAQALDLLGERCGIVGT 135

Query: 143 YNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIAV 188
                   L   +       G+                + +S  G  +     +   +AV
Sbjct: 136 LGTGFHGALEQGKHTTPDPVGVQATLASLKQAGARAVAMEVSSHGLDQGRVAALEFDVAV 195

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
            T ++  HL     +E   +AKA++           +N DD+F   L  ++H   +    
Sbjct: 196 FTNLSRDHLDYHGSMEAYGAAKAKL-FAWPNLRCRVINLDDAFGRELAQQAHDSRLIGYS 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               S        + +         +        +  + +G     N+L  +G +  +  
Sbjct: 255 LSDASAF--LYCSEAQFDDHGVRARLVTPRGEGVLRSNLLGRFNLSNLLAVVGALLGMDY 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +K L       GR    R         ++D ++  +         VL  + PH +
Sbjct: 313 GLDEILKVLPQLQGPAGR--MQRLGGGDKPLVVVDYAHTPDALE-----KVLEAMRPHVQ 365

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP 419
           GR + + G     G         L   ++      VW++  +            ++    
Sbjct: 366 GRLVCLFG----CGGDRDRGKRPLMAAVAERLADVVWVTDDNPRSEDPAQIVADIRAGFC 421

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               V +          + +     DV+V+  K 
Sbjct: 422 APEQVQFIHGRGDAIARLIAQAEAADVLVLAGKG 455


>gi|87122632|ref|ZP_01078509.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
 gi|86162090|gb|EAQ63378.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Marinomonas sp. MED121]
          Length = 499

 Score = 86.8 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 77/457 (16%), Positives = 147/457 (32%), Gaps = 47/457 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
               ++ DSR+++    FFA+ G   +G D++     +G  +V V  ++V    +L + V
Sbjct: 29  EFEYLATDSRNLSKSTLFFALPGVSSNGWDYLASIAAQGCRVV-VVPEVVKLDETLDLAV 87

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--------- 136
             V D L ++        L   ++I A+TG+ GK++          +I  +         
Sbjct: 88  IRVPDTLMSMTAFITKFALPYPSSICAVTGTNGKSSISYYSAQIAKAINLSSAIVGTFGV 147

Query: 137 ---YACIGSYNNHIGVPLTLARMPVDVDFGIFEL--GMSHLGEIRFLTHLVRPHIAVITT 191
                   S      +             G+  +    S     +     +    A+ + 
Sbjct: 148 GLLDDLKPSEQTTPDLLSMHTLAITFASQGVEHMTFEASSHALDQGRIEGLPIETAIYSN 207

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           ++  HL     +   A AKA++F   +    +    D+    +L A +            
Sbjct: 208 LSRDHLDYHGSMAAYAEAKAKLFRFPQLKRAVICIDDEYSDIMLDAAAC----PVYSYSL 263

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +NADF        +++   ++++ GKS  V    +G     N +  L        D  
Sbjct: 264 QHENADFFASNLNYLTDRVEFDLKVLGKSYSVSLPLLGEFNVANAIAALAAHWDQVEDKA 323

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
             I ALS+     GR +                + +A           L  +  H +GR 
Sbjct: 324 QLISALSLLSGAPGRMQMVNLQSAPLVVIDYAHTPSA-------IEVALKALRLHNKGRL 376

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------------VLALKD 416
             + G     G         L    +L       L+  +               +L  KD
Sbjct: 377 TCIYG----CGGDRDRGKRPLMTEAALAYSDIACLTSDNPRTESVAQILDDALIMLENKD 432

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           AL     +H           + +     DV+++  K 
Sbjct: 433 ALVEQGSLHILPDRRAAIFDVIAKAQSDDVILIAGKG 469


>gi|225630606|ref|YP_002727397.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
 gi|225592587|gb|ACN95606.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Wolbachia sp. wRi]
          Length = 475

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 64/478 (13%), Positives = 138/478 (28%), Gaps = 61/478 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL     + I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLH----NIIDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117
           A  ++ +  +  ++    IP           +     +++        +   + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMP-------------VDVDF 162
           GKT+  E       +     A IG+     + G       +              + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S  G  ++  H ++   A  T  +  HL     +      K  +F  +   G 
Sbjct: 174 LVLE--SSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +   D        K        + ++GK K +D  L +         + V++  +   
Sbjct: 232 TAILNADIDEYGALLKIAEKRSNKVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQIYN 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+L  +GI  +   ++             E              F  +
Sbjct: 291 TFFPVLGKFQAYNLLCAIGISGLNYREIC-----------VEKLVSPPGRMEKVKPFAFV 339

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +          L  +  H   + I V G     G             ++     
Sbjct: 340 DYAHTPSA-----LKQALLSLKWHINKKIILVFG----CGGNRDQTKRSEMGKIAQMYAD 390

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET------MDGLFLFIQSSL-VDGDVVVV--KS 451
            V ++  +      A  R   + +                       +G +++V  K 
Sbjct: 391 KVIITDDNSRDEDPAKIRHDILLHCPDALEIGGRREAIEKGVDIAYNEGMILLVAGKG 448


>gi|15903427|ref|NP_358977.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae R6]
 gi|116516282|ref|YP_816820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|149021803|ref|ZP_01835810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|46577039|sp|Q8CWQ5|MURE_STRR6 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122278334|sp|Q04JL8|MURE_STRP2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|15459034|gb|AAL00188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine Ligase
           [Streptococcus pneumoniae R6]
 gi|116076858|gb|ABJ54578.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae D39]
 gi|147930039|gb|EDK81026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP23-BS72]
 gi|301794540|emb|CBW36983.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus pneumoniae INV104]
 gi|332074284|gb|EGI84761.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA17545]
          Length = 481

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----HRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|320547339|ref|ZP_08041630.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
 gi|320448037|gb|EFW88789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptococcus equinus ATCC 9812]
          Length = 483

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/449 (15%), Positives = 133/449 (29%), Gaps = 43/449 (9%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR +     FFA KG  +   +++  AVQ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSRDVDSSTLFFA-KGATFK-KEYLEQAVQLGLPFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+        K  IIA TG+ GKTT        L    K     
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPEEKLKIIAFTGTKGKTTAAYFTYNILKQSHKPAMFS 144

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                  G     +++       +F++  + +        +     A +          +
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMATAVDNGMTHLIMEVSSQAYLVD------RVY 198

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
               ++ +      + +                LL   S A+ +     + K        
Sbjct: 199 GLTFDVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMTNSKAVVVNAGMDYFKVVTQQVAD 258

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +        S   ++        V      H+ I    + N    L           +  
Sbjct: 259 KPHDFYGSGSENTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENALAAGLACLRLGTSLK 318

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
                       G+        G    +D ++N +         +LS +  H +G+   +
Sbjct: 319 DIKKGISETSVPGRMEVVTQANGAKVFVDYAHNGDSLE-----KLLSVVEEHQKGQLYLI 373

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVH 425
           LG     GE  ++   D A +++ +   +V L+               +   + RS+ + 
Sbjct: 374 LGATGNKGESRRA---DFARIINAHQNLNVILTADDPNYEDPQAIAEEIASQITRSLDIQ 430

Query: 426 YSETMDGLFLFIQSSLV-DGDVVVV--KS 451
                +            + D V++  K 
Sbjct: 431 V--DREKAIAKAMLLTKNENDAVIIAGKG 457


>gi|161508038|ref|YP_001578005.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260103045|ref|ZP_05753282.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|160349027|gb|ABX27701.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus DPC 4571]
 gi|260083135|gb|EEW67255.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus helveticus DSM 20075]
 gi|323467273|gb|ADX70960.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
 gi|323467316|gb|ADX71003.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamyl-l-lysine ligase
           [Lactobacillus helveticus H10]
          Length = 523

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 63/467 (13%), Positives = 118/467 (25%), Gaps = 61/467 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVIGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+         +    K ++     K          +          A    
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFNEVYA-----AATTTT 261

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              S       DF+    K   +  +   +L  K              +  +     + +
Sbjct: 262 NPDSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLFCASDKARKLPINGDYTLKM 321

Query: 306 LTADVDTA------------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           L    ++             +                R    +     +     A+  + 
Sbjct: 322 LGDFNESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRMQTERTKNHGMVVVDYAHNKAS 381

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
             A+    Q   +     + V       G+   S     +E LS Y       +      
Sbjct: 382 MMALMNFMQSEFNNPKIIVVV----GAPGDKGVSRRPGFSESLSAYADKAFLTTDDPGFE 437

Query: 410 HVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
              ++ + +   I     +               +     DVV++  
Sbjct: 438 DPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICG 484


>gi|283850519|ref|ZP_06367807.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
 gi|283574090|gb|EFC22062.1| UDP-N-acetylmuramyl-tripeptide synthetase [Desulfovibrio sp.
           FW1012B]
          Length = 487

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 140/473 (29%), Gaps = 50/473 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L +A++  +I       V G    S  + P   F A+ GP  DG  FI  A+ +GA 
Sbjct: 10  LAALTEAVRAEAI------PVAG---HSAKVLPGGVFVAVAGPVADGERFIPDALARGAA 60

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            VV     V   G+    +   ++   AL +LA A     R    + AITG+ GKTT   
Sbjct: 61  HVVAGPGTVLPAGAT-ARLVVAENPKAALGRLAAARYGTDRMAMPVAAITGTNGKTTITY 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMS 170
           ++    ++  +    +G+           A +       I E              +  S
Sbjct: 120 LIERLATAAGRKVGVLGTVAYRWPGVSRNASLTTPDCLTIHENLAAMHAAGCDLAVMEAS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EKTGTIFLNYDD 229
                +     +     + T +   HL     +E    AKA +F           LN+DD
Sbjct: 180 SHAIAQDRLAGLAFAAGIFTNLTQDHLDYHKDMESYFEAKAGLFRRYLADPRNAVLNFDD 239

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            F   L  +        + +                  E   ++V+    +  V     G
Sbjct: 240 PFGRRLLEEFPQALGYGLTAPPAGFPRILAGTVLGHGREGQRLDVRHGDAAHAVASPMPG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H AQN+L  +G   +L                            N    T+  +  +  
Sbjct: 300 RHNAQNVLAAMGAALVLGLPAAAFAALADCHGAPGRL----ERIANPRDLTVFVDYAHTP 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A      +VL       +G+  AV G     G         L             L+  
Sbjct: 356 DA----LENVLGAAREFTKGKLFAVFG----CGGDRDRTKRPLMAAAVARFADVAVLTSD 407

Query: 410 HVLA------LKDA---LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         + DA   L  +                 S +   DV+V+  K 
Sbjct: 408 NPRHEDPLAIMADARPGLAGARRAVAEPDRRRAIGLALSEMGPEDVLVIAGKG 460


>gi|28493192|ref|NP_787353.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
 gi|28476233|gb|AAO44322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Tropheryma whipplei str. Twist]
          Length = 531

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 38/477 (7%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 30  YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQVQ 89

Query: 62  QKGAGLVVVNTDM-----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
                 V+ +           + + S P+   D     L  LA          I  ITG+
Sbjct: 90  S--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 147

Query: 117 VGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPV---------DVDFGI 164
            GKT+T  +       +         IGS  +     LT   +                 
Sbjct: 148 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 207

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F L  S     R     +   +A  T + P H+     +E    AK  +F        + 
Sbjct: 208 FALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLNKRSNSAVI 267

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    L K    +  + +  + +G      +Q    +      +  +   G  +E 
Sbjct: 268 NIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSGYRVES 327

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N  M + I+  L  D++     L      +            G    + 
Sbjct: 328 SISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGNSPRVI 387

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +     +++ A+     I+         ++  +   G+   S    L ++   Y+   
Sbjct: 388 VDHGHTVDAVETALVAAKSITRGR------LITIINADGQRDPSKRKHLGQLCGAYSDKL 441

Query: 404 VWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               G     +   ++  +   +      V    +M    L         D V+   
Sbjct: 442 FITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSG 498


>gi|46577003|sp|Q83GN3|MURE_TROWT RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
          Length = 509

 Score = 86.8 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 71/477 (14%), Positives = 138/477 (28%), Gaps = 38/477 (7%)

Query: 5   WTFHDLLQAIQGHSI---GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   DL++                FV+GI+  ++S+   + F A +G    G +F+    
Sbjct: 8   YRLSDLIKQTGVRLTDCSNQFSDRFVSGITQIAQSVERDDIFVAFQGKTRHGVEFLDQVQ 67

Query: 62  QKGAGLVVVNTDM-----VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
                 V+ +           + + S P+   D     L  LA          I  ITG+
Sbjct: 68  S--CAAVLTDNKGRHIMQSDCLPTRSTPILVTDSPRSDLIVLAKRVYPIDDIRIFGITGT 125

Query: 117 VGKTTTKEMLT---IALSSIKKTYACIGSYNNHIGVPLTLARMPV---------DVDFGI 164
            GKT+T  +       +         IGS  +     LT   +                 
Sbjct: 126 NGKTSTMHIAAKLLEMMGISCGISTTIGSSASESDSCLTTPELCQLYARIFTAKQARADF 185

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
           F L  S     R     +   +A  T + P H+     +E    AK  +F        + 
Sbjct: 186 FALEASSHAINRGRLGDIVLEVAAFTNLTPEHMEEHKNMEAYYQAKKALFLNKRSNSAVI 245

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    L K    +  + +  + +G      +Q    +      +  +   G  +E 
Sbjct: 246 NIDTPYGIRLFKETGCSASVISENTKYGLDHKLFWQASVRRVGLSFGFTLISPSGYRVES 305

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   A N  M + I+  L  D++     L      +            G    + 
Sbjct: 306 SISLLGKAFALNTCMAIVILCNLGIDIERIDSVLRKAGGLKMVLPGRMEVFQTGNSPRVI 365

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +     +++ A+     I+         ++  +   G+   S    L ++   Y+   
Sbjct: 366 VDHGHTVDAVETALVAAKSITRGR------LITIINADGQRDPSKRKHLGQLCGAYSDKL 419

Query: 404 VWLSG----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               G     +   ++  +   +      V    +M    L         D V+   
Sbjct: 420 FITDGHSRFENPAEIRRMILDGVEGPRRQVEQIPSMTQAVLAAIDIARSDDTVLCSG 476


>gi|327470473|gb|EGF15929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK330]
          Length = 481

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 86/514 (16%), Positives = 159/514 (30%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVSAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS                G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHHPALLSTMNTTLDGETFFKSTLTTPESLDLITMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANDRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     F+++K +   L      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMDHFQIVKEQVACLEHDFYGAGSSNTITDSQAFSFEATGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLKDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKIFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVAYLGDYALAEKY 480


>gi|313124624|ref|YP_004034883.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312281187|gb|ADQ61906.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 516

 Score = 86.8 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 124/469 (26%), Gaps = 65/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR +     FF  KG    G    ++  A + GA   V             +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGA---GFRPTYLTMAKENGAIAYVAEQPYPE---GTGMHALI 86

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------- 138
           V +V  A+  L+ A     +    ++  TG+ GKTT+   L   L  +            
Sbjct: 87  VRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVD 146

Query: 139 ------CIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                    ++ + +  P +      M   VD G+  + M  S     +     +   + 
Sbjct: 147 NILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+        E+    K ++     K          +        +      
Sbjct: 207 FFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++    +N D +               + K     +  +      S E     IG   
Sbjct: 267 YLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +     +   K +                  Q    ++ +  +     
Sbjct: 327 ETNATGAIIGAGLAGMSYEDCAKGIRHVTIPGR----METVTTQKHGLIVVDYAHNK--- 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G 408
                 +          R I V+G   + G   +    +             +L+    G
Sbjct: 380 ASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESL----TAEADKAYLTTDDPG 435

Query: 409 -FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
             +   + + +   I     E       +       S     DVV++  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCG 484


>gi|332199575|gb|EGJ13650.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae GA41317]
          Length = 481

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----HRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  + +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLREQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISNYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|148545136|ref|YP_001272506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri DSM 20016]
 gi|184154468|ref|YP_001842809.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227364299|ref|ZP_03848392.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|325683498|ref|ZP_08163014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
 gi|167017294|sp|A5VMU5|MURE_LACRD RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|148532170|gb|ABQ84169.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           DSM 20016]
 gi|183225812|dbj|BAG26329.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus reuteri JCM 1112]
 gi|227070612|gb|EEI08942.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM2-3]
 gi|324977848|gb|EGC14799.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri MM4-1A]
          Length = 516

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 77/481 (16%), Positives = 143/481 (29%), Gaps = 63/481 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH---DFILHAVQKGAGLVVVNTDMV 75
           +  +       +S DSR +     FF        G+    ++  A +KGA   V   +  
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFCK------GNFLPKYLASAKEKGAIAYVAEKEYP 74

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              G   +P   V+D   A++ L  A     ++   IIAITG+ GKTTT       L+  
Sbjct: 75  EGEG---LPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHILAQS 131

Query: 134 KKTYA-------------CIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEI 175
              +                  + + +  P +      M V VD G+  L M  S     
Sbjct: 132 TADHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRVAVDNGMTHLVMEVSSQAYK 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +   + ++  + +   I+P H+         +    K ++     K          +   
Sbjct: 192 KNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFTDVY 251

Query: 234 LLKAKS--------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                +         A     I     ++         +   E  +    L  K+ ++  
Sbjct: 252 YTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQLNL 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLID 343
            G               V+ + A       A              R     +    T+  
Sbjct: 312 DGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHIRGRMEMINSNTHGTIYV 371

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N AS+K  ++ L        G+   VLG     G+   S      + L+      
Sbjct: 372 D-YAHNYASLKRLLAFLK--RQTNAGKVTVVLGA---TGDKGISRRPGFGKALTEEQPDE 425

Query: 404 VWLS----G-FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           V L+    G    + +   +       +  H+ +    +           + D+VV+  K
Sbjct: 426 VILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSENDDIVVLAGK 485

Query: 451 S 451
            
Sbjct: 486 G 486


>gi|194396806|ref|YP_002038162.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae G54]
 gi|194356473|gb|ACF54921.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptococcus pneumoniae
           G54]
          Length = 481

 Score = 86.5 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQSYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S              +  + +++ 
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVEDQDHDFYGS----------QFDNQIENSKAFS 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  + +     IG    +N +        L A ++   K ++            + 
Sbjct: 279 FSATGKLAGDYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQK 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 339 NG---AKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y++I    E +P
Sbjct: 448 DAVIIAG-KGADCYQIIQGKKESYP 471


>gi|225857155|ref|YP_002738666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus pneumoniae P1031]
 gi|225724415|gb|ACO20267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Streptococcus
           pneumoniae P1031]
          Length = 481

 Score = 86.5 bits (212), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 76/493 (15%), Positives = 146/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----HRVYGLTFDVGVFLNITPDHIGPIEHSSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +    +      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQFDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGNFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y++I    E +P
Sbjct: 459 CYQIIQGKKESYP 471


>gi|315641870|ref|ZP_07896862.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
 gi|315482438|gb|EFU72978.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus italicus DSM 15952]
          Length = 514

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/481 (15%), Positives = 149/481 (30%), Gaps = 58/481 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFV-----NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             ++   IQ      +P   +     + +S DSR       FF  KG  +    F+  AV
Sbjct: 28  LKEV--IIQQQWHITLPDHPIVDHVFHSLSYDSREADEATLFFC-KGQQFK-EVFLEQAV 83

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             G  + V          S+      V D+  A+  +A         K T I ITG+ GK
Sbjct: 84  TGGVKVYVSEQPY----DSIDAVGLIVTDIREAMAMIAQFFYDHPENKLTKIGITGTKGK 139

Query: 120 TTTKEMLTIALSSIKKTY-----------ACIGSYNNHIGVP---LTLARMPVDVDFGIF 165
           T+    L  +L                    +    +H+  P       +M   V+ G+ 
Sbjct: 140 TSCAYFLKDSLEQATNHKTALFSSEETTLDGVHYTRSHLTTPEALDLYKQMAKAVENGLT 199

Query: 166 ELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTG 221
            L M  S           +   + +   I+P H+S       ++    K ++ +  ++  
Sbjct: 200 HLVMEVSSQAYKTKRVFGLTFELGIFLNISPDHISPIEHPTFDDYLYCKRQLIQHSKQMI 259

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
               +        L A++  L      +FG+S   D +++     +  +     +     
Sbjct: 260 LNADSDYFE----LLAETCTLYHVPYVTFGRSLTVDVEIQDATDTRSFDLIAHTLSFSDL 315

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G     N    L +  +L      + +A++                     
Sbjct: 316 EGGYRLAILGTFNHDNATAALLVSHLLGFSEKISRQAIANTVIPGRMHVIDE----PNQP 371

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + +  N  S+KA   +   + P+G+     V+      G  + S   D+A+ LS  
Sbjct: 372 LILID-FAHNYLSIKAVGELGHHLRPNGK-----VIILTGSTGGKALSRRADIAKALSEI 425

Query: 400 NISHVWLSG----FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
               +  S         A+   +       ++ +      +       S     D+V + 
Sbjct: 426 ADEAILTSDDPNFEDPAAIAKEIISHIDNDALSITVETQREKAIAIALSHATTEDIVAIC 485

Query: 451 S 451
            
Sbjct: 486 G 486


>gi|319957189|ref|YP_004168452.1| mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
 gi|319419593|gb|ADV46703.1| Mur ligase middle domain protein [Nitratifractor salsuginis DSM
           16511]
          Length = 472

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 121/359 (33%), Gaps = 38/359 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A+ +L    +      ++ +T S GKT+ K  +   L+   +TYA   S N   GV  
Sbjct: 143 RRAMKRL----KSLPDLKVVGVTASYGKTSIKNFIATLLAQRYRTYATPRSVNTLGGVMK 198

Query: 152 T-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                +P + +  + E+G    G+I  +T  V+PH AV+  I PAH+  F  +E I + K
Sbjct: 199 DVNEELPEEAEVYVVEMGARGEGDIAEITRFVQPHYAVVGKIGPAHIEYFKTLERIRNTK 258

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI +                   +         +   +   +       R   +     
Sbjct: 259 MEILQSPRLIEAWVHESARIKPTEMIHIFGPEIEEVEATLEGTCFTLEGERYCAKILG-- 316

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                                 A N+   + +   L    D     L    P   R +R 
Sbjct: 317 -------------------AFNAVNLAAAIHVARALGLTPDEIRAGLEKIEPVPHRLQRI 357

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     ++D+S+N N   M A+  + +       GR++ +   + E     ++ + 
Sbjct: 358 DAGGK----VILDDSFNGNIDGMMASFDLAATWP----GRKVLITPGLVE---ADEALNR 406

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +AE         + ++G    A+   +     + + E    +   +      GD+++ 
Sbjct: 407 QVAERAEEI-FDRIIVTGDLNYAIFKEIVSPEKLRHLERKSEMEQMLVEETRPGDLILF 464


>gi|300812318|ref|ZP_07092754.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496738|gb|EFK31824.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 516

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 123/469 (26%), Gaps = 65/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR +     FF  KG    G    ++  A + GA   V             +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGA---GFRPTYLTMAKENGAIAYVAEQPYPE---GTGMHALI 86

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------- 138
           V +V  A+  L+ A     +    ++  TG+ GKTT+   L   L  +            
Sbjct: 87  VRNVSKAMALLSAAFYRFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVD 146

Query: 139 ------CIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                    ++ + +  P +      M   VD G+  + M  S     +     +   + 
Sbjct: 147 NILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+        E+    K ++     K          +        +      
Sbjct: 207 FFLNITPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++    +N D +               + K     +  +      S E     IG   
Sbjct: 267 YLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +     +   K +                  Q    ++ +  +     
Sbjct: 327 ETNATGAIIGAGLAGMSYEDCAKGIRHVTIPGR----METVTTQKHGLIVVDYAHNK--- 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G 408
                 +          R I V+G   + G   +    +             +L+    G
Sbjct: 380 ASMLALMRFMRREFTNPRVIVVVGAPGDKGISRRPGFSESL----TAEADKAYLTTDDPG 435

Query: 409 -FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
             +   + + +   I     E       +       S     DVV++  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPNDVVLLCG 484


>gi|303327353|ref|ZP_07357794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302862293|gb|EFL85226.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 488

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 85/457 (18%), Positives = 145/457 (31%), Gaps = 49/457 (10%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSI 83
           +  DSR +   + F A+ G + DG  FI  AV+ GA +VV       +  + AS+ +   
Sbjct: 19  VRSDSRVVGQGDIFVAVPGVNEDGARFIPAAVEAGAAVVVCRPGGPEDAALQASVRAEGC 78

Query: 84  PVFGVDDVLGALNKLA-VAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
            V   +D   AL +LA    R   S+  I+ +TG+ GKTT+  +L    +        +G
Sbjct: 79  RVVYHEDPREALWRLAEARWRTGASRVKILGVTGTNGKTTSTYLLERLFTDAGHKVGVLG 138

Query: 142 SYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           + +                      +        VD  + E+  S     +     V   
Sbjct: 139 TVSYRWPGHSEAAPLTTPDPLRVHSMLAQMEAAGVDVAVMEV--SSHAIDQQRVCGVPFA 196

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A  T +   HL     +E     KA +F  L +   +     D  +     +     + 
Sbjct: 197 GAAFTNLTQDHLDFHKDMESYFKTKARLFLELPRAEKVMAVNADDPWGRRLLELCPRALS 256

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G  +            +E   + + L+G++ E+    +G   A N+L    +   
Sbjct: 257 FGLQQGPPRRRHLWGELLSAGTEGCRLRMHLEGRTWELRSPLVGAFNASNLLTVQALALE 316

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
              D      AL  F    GR +R   +     F     + +A        ++VL  +  
Sbjct: 317 TGLDPGQFK-ALESFTGVCGRLERVENSQGLNVFVDYAHTPDA-------LVNVLKALRG 368

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKD--- 416
            G  R I V G     G         L             L+  +         L+D   
Sbjct: 369 AGFKRIITVFG----CGGNRDRTKRPLMGEAVARYADVAVLTSDNPRFEEPEAILRDVLP 424

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L  +  V                L   D +++  K 
Sbjct: 425 GLKEAREVLVEVDRHAATARALDMLGKDDALLIAGKG 461


>gi|239917866|ref|YP_002957424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|281413640|ref|ZP_06245382.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
 gi|239839073|gb|ACS30870.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Micrococcus luteus NCTC 2665]
          Length = 585

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 75/510 (14%), Positives = 151/510 (29%), Gaps = 67/510 (13%)

Query: 7   FHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L +A I  H  G  P   V G+S+DSR + P + + A+ G    G  F   A++ GA
Sbjct: 34  AQALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGARAHGAAFAATALEAGA 93

Query: 66  GLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGK 119
             V+ +     ++A  G   +PV  VD V  A   +A         +   ++ +TG+ GK
Sbjct: 94  VGVLTDAAGRALLAGQGLADVPVLEVDAVRTAAGTVAARVYGGGGDAGPRLVGVTGTNGK 153

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VP-----------LTLARMPVDVDFGIF 165
           TTT  +    L ++ +    +G+     G   VP             L  +  +      
Sbjct: 154 TTTSFLSAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEQVDTA 213

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S           +R  +A  T +   HL     ++E  +AKA +F+       +  
Sbjct: 214 VMEVSSHAVAYQRIAGLRYAVAGFTNLTQDHLDMHGSMQEYFAAKAGLFDPARTDHAVIT 273

Query: 226 NYDDSFFELLKAKSHALGIKTIYS--------------FGKSKNADFQLRKWKQCSEQSW 271
                      A + A G                          AD+++ +         
Sbjct: 274 LDGGEGPRWGVAMARAAGAPVTTLALGPAAPTPGALAEHDPGLRADWEVAELAPDGLGHR 333

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH-------PKE 324
             ++      E+                L ++ +L A  +  + AL+          P  
Sbjct: 334 FTLRHAATGRELRASVGLPGRFNVANAALAVLLVLHAVGEEHLDALAAVLDVPAGEGPLA 393

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    + +    ++D ++N +           ++ +    GR + V G        
Sbjct: 394 AAVPGRMEVVGREPDAVVDFAHNPDGMVQALRSLADARAAAGTRGRTLIVFGSAG----D 449

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGF--------------------HVLALKDALPRSIHV 424
                  +   ++      V ++                          +     R++ +
Sbjct: 450 RDRDKRPVMGAIAARAADVVIVTDDTPHSEDPAPIRAHILAGARAEADRIAREEGRTVVI 509

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
                               D +++     
Sbjct: 510 EEVADRFAAIRRAVELAGPQDGILLAG-RG 538


>gi|322373943|ref|ZP_08048478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
 gi|321277315|gb|EFX54385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. C150]
          Length = 481

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 78/457 (17%), Positives = 133/457 (29%), Gaps = 63/457 (13%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
                +S DSR + P   FFA KG  +   +F+ +AV+ G    V   D       + IP
Sbjct: 33  VTFEHLSYDSRDVTPSSLFFA-KGAGFK-REFLENAVKTGLSFYVSEKDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A++ +A A     + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAYNILKQSHKPAMLSTM 145

Query: 143 YNNHIGVPLT------------LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAV 188
                G                   M   VD G+  L M  S    +    + +   + V
Sbjct: 146 NTTLDGKTFFKSTLTTPESLDLFRMMSEAVDNGMTHLIMEVSSQAYLTKRVYGLTFDVGV 205

Query: 189 ITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E  +            F     A         
Sbjct: 206 FLNISPDHIGPIEHPTFEDYFYHKRLLLENSQAVIVNSGMDHFDFVAEEVA--------- 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                K  +   +  +        +        + +     IG     N +        L
Sbjct: 257 ----DKDHDFYGKDSENTVQHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACLRL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A ++   K ++            +    + F        + +         +L  ++ H
Sbjct: 313 GASLEDIKKGIAQTSVPGRMEILTQANGAKVFVDYAHNGDSLD--------KLLQVVTDH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALKDA 417
            +GR   +LG     GE  +    D   VL+ Y    V LS               +   
Sbjct: 365 QKGRIALILGAPGNKGESRRK---DFGHVLNTYPEVDVILSADDPNKEDPLTICQEIASH 421

Query: 418 LPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVV--KS 451
           + R + +      +       S      D +V+  K 
Sbjct: 422 INREVRIIV--DREEAIKTAMSETTGSKDALVIAGKG 456


>gi|167745317|ref|ZP_02417444.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
 gi|167655038|gb|EDR99167.1| hypothetical protein ANACAC_00008 [Anaerostipes caccae DSM 14662]
          Length = 468

 Score = 86.1 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 106/355 (29%), Gaps = 40/355 (11%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHI 186
             +  I K +        +IG P T   +    +   + E+    L          RP +
Sbjct: 139 ALVGEIMKCFYSDVYVVGNIGTPYTSVALDTKDESVIVAEISSFQL----ETIQDFRPQV 194

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + +  I P HL     +E  A  K  I +       + LNY+D     +  +++A  +  
Sbjct: 195 SAVLNITPDHLDRHGTVEVYARTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVF- 253

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                   + D +L +     + S+M  + +          I      N    L  +++ 
Sbjct: 254 -------FSLDHELEEGVYFKDGSFMLAENKTVQTICTEADINLLGGHNYENILAAIAVS 306

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A +        +G   R             ++S   N  +    I  +++ +  
Sbjct: 307 HYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVAYYNDSKGTNTDAAIKGIKAMNRPTFL 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
             G            G   ++ + D  E      +  + L G     +           +
Sbjct: 367 IGG------------GYDKKAEYDDWIE-AFDGKVKELILLGATAEKIGKTAEAHGFSRI 413

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            Y +T++    +     V GD V++    +S             F   +N L E 
Sbjct: 414 VYVDTLEEAVEYASKHAVSGDAVLLSPACASWGMFPNYEVRGDRFKEYVNKLKER 468


>gi|223984264|ref|ZP_03634409.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
 gi|223963749|gb|EEF68116.1| hypothetical protein HOLDEFILI_01703 [Holdemania filiformis DSM
           12042]
          Length = 459

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 127/441 (28%), Gaps = 52/441 (11%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
            I     F A++G   DG  +      +G G V+ +     +            D     
Sbjct: 21  EIGRDGLFVALRGDRADGRQWADAVRSRG-GYVLSDQPGERT--------IVHPDPRAVY 71

Query: 96  NKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----- 148
             L  A       K T+I +TG+ GK+T  ++L   LS   +    IG+    IG     
Sbjct: 72  PLLLQAYYDYPALKLTMIGVTGTNGKSTVTQLLYDMLSGAGRRCCLIGTGRIVIGDEVRF 131

Query: 149 ------VPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                  PLTL R+  +      +   + +S           +   +AV+T +   HL  
Sbjct: 132 SPNTTPDPLTLTRLLDEAVRRGIDTVIMEVSSQALAMHRVDGLLFDLAVLTNLKQDHLDY 191

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              ++    AK  +FE L++ GT  LN DD   +   ++ H             +     
Sbjct: 192 HKTLKAYQRAKFMLFEKLKEKGTAILNQDDPVTQRWLSQLHRPVFTYGRDSVNFRIHPVA 251

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   +       L G  +E    G          +  G              A  +
Sbjct: 252 ETLDSITFD-------LNGHRVEAPLAGAFNMRNLTAALACGFAL-------DIPWAAML 297

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                      R  +      L    Y    ++++A +    +++     R   V G   
Sbjct: 298 EFAHHAALPEGRMEIVCRQPVLAVVDYAHTASALEAMLKHWRKVADQRHTRLSVVFG--- 354

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV--HYSETMDG 432
             G   ++    L   ++      V L            +   +                
Sbjct: 355 -CGGDREADKRPLMGRIACAYADQVVLCDDNPRTEDPDRILAQIAAGCDGSQKIIRDRAE 413

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
              F+       D++VV  K 
Sbjct: 414 AIKFVLDGAQTDDIIVVAGKG 434


>gi|209519090|ref|ZP_03267896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
 gi|209500462|gb|EEA00512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp. H160]
          Length = 520

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 85/487 (17%), Positives = 152/487 (31%), Gaps = 58/487 (11%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D L  +  H            +  D+RS+A  +AFFA      D   FI  A+++GA 
Sbjct: 14  IADALTWLHAHVQPGA------HLHADTRSLAAGDAFFAYAVEGADNRPFIDAAIERGAA 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA-----VAARLRSKATI-IAITGSVGKT 120
            V+V  +        S+    V     ALN+LA        R  S A + + ITG+ GKT
Sbjct: 68  AVLVQPEGFGGTLDASVAH-AVP----ALNELAGTIASAWYRDPSDAMLTVGITGTNGKT 122

Query: 121 TTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
           +  + +  ALS++                  + +       P     +    D       
Sbjct: 123 SCSQWVAAALSALGTRCAIVGTLGTGLVGHLVHTGFTTPDAPQLQRSLAQLRDAGAQAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL          +AK  +F   E    +   
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFAAYETAKTRLFAWPELRAAVINR 242

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-----------EQSWMEVQ 275
            D +   LL +             G   +A  +                     ++    
Sbjct: 243 DDAAGRRLLASTHGHARTIAYGIEGGQGDAHAKGAPQADAWLTASNVRATATGTAFHLNT 302

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 EV    +G     N+L  LG++       D A+  L+      GR +R    L 
Sbjct: 303 SDWGHAEVEVQTLGLFNVSNLLAVLGVLLAADVPFDAALAELAKLESVNGRMERLGGRLQ 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++ + Y   P +++  +  L  I+    G  + + G     G    +    L   
Sbjct: 363 NDEPLVVID-YAHTPDALEKTLEALRPIATARGGELVCMFG----CGGDRDATKRPLMGA 417

Query: 396 LSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++     +V ++  +  +         +   +  +      E      L         DV
Sbjct: 418 IAERLADNVVVTSDNPRSENPLAIIEQIVAGMQDASKARRIEDRASAILQAIRGAAREDV 477

Query: 447 VVV--KS 451
           +V+  K 
Sbjct: 478 IVLAGKG 484


>gi|288919048|ref|ZP_06413389.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
 gi|288349588|gb|EFC83824.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EUN1f]
          Length = 527

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/252 (23%), Positives = 97/252 (38%), Gaps = 17/252 (6%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSL 81
               V G++ DSR++ P + + A+ G +  G DF + AV  GA  V+ +    A + G +
Sbjct: 55  DDVRVTGVTHDSRAVIPGDLYAALPGANVHGADFAVGAVAAGAVAVLTDPSGAARLAGRV 114

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
           ++PV   DD    L  +A           T++ +TG+ GKTTT  +L   L +   T   
Sbjct: 115 AVPVLVTDDPRRDLAPVAAWVYGHPSQALTLLGVTGTNGKTTTAFLLDAGLRAAGHTTGL 174

Query: 140 IGSYNNHIG---VPLTLARMPVDVDFGIFE-----------LGMSHLGEIRFLTHLVRPH 185
           +G+    IG   VP             +F            + +S     +     +R  
Sbjct: 175 LGTVQTRIGGTVVPSVRTTPESSDLQALFATMVERGVTAAVMEVSSHALAQHRVDALRFT 234

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A  T ++  HL     +E+  +AKA +FE       +    DD    L + +  A    
Sbjct: 235 GAAFTNLSQDHLDFHPTMEDYFAAKATLFEAGRSKDAVICVDDDWGRRLARQRPDARTYS 294

Query: 246 TIYSFGKSKNAD 257
              +       D
Sbjct: 295 VTGADADWWPED 306


>gi|167825933|ref|ZP_02457404.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 9]
 gi|167847419|ref|ZP_02472927.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei B7210]
          Length = 165

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 33  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 88

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 89  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 147

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 148 VVDALANE 155


>gi|227543711|ref|ZP_03973760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300908776|ref|ZP_07126239.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
 gi|227186279|gb|EEI66350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri CF48-3A]
 gi|300894183|gb|EFK87541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus reuteri SD2112]
          Length = 516

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 139/481 (28%), Gaps = 63/481 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH---DFILHAVQKGAGLVVVNTDMV 75
           +  +       +S DSR +     FF        G+    ++  A +KGA   V   +  
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFCK------GNFLPKYLASAKEKGAIAYVAEKEYP 74

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSI 133
              G   +P   V+D   A++ L  A     ++   IIAITG+ GKTTT       L+  
Sbjct: 75  EGEG---LPAIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFADHILAQS 131

Query: 134 KKTYA-------------CIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEI 175
              +                  + + +  P         R  V+       + +S     
Sbjct: 132 TANHIALFSTLDRILGNKPEDEFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +   + ++  + +   I+P H+         +    K ++     K          +   
Sbjct: 192 KNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFTDVY 251

Query: 234 LLKAKS--------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                +         A     I     ++         +   E  +    L  K+ ++  
Sbjct: 252 YTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQLNL 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK--RYRCALNQGFFTLID 343
            G               V+ + A       A              R     +    T+  
Sbjct: 312 DGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLNHVHIRGRMEMINSNTHGTIYV 371

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N AS+K  ++ L        G+   VLG     G+   S      + L+      
Sbjct: 372 D-YAHNYASLKRLLAFLK--RQTNAGKVTVVLGA---TGDKGISRRPGFGKALTEEQPDE 425

Query: 404 VWLS----G-FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           V L+    G    + +   +       +  H+ +    +           + D+VV+  K
Sbjct: 426 VILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIVVLAGK 485

Query: 451 S 451
            
Sbjct: 486 G 486


>gi|167647634|ref|YP_001685297.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Caulobacter sp. K31]
 gi|167350064|gb|ABZ72799.1| UDP-N-acetylmuramyl-tripeptide synthetase [Caulobacter sp. K31]
          Length = 485

 Score = 85.7 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 96/474 (20%), Positives = 155/474 (32%), Gaps = 49/474 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T   +L         + P   + G++ DSR +     F A+ G   DG  FI  A+    
Sbjct: 4   TLSQILN----RPFEVDP--VITGVTADSRKVREGFLFAALPGSKADGRSFIDGAI---- 53

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
                       +  LS+PV    D+  A    A        AT IA+TG+ GKT+    
Sbjct: 54  ASGAAAILAPDDVEGLSVPVVHAGDLRRAYALAAAQFWAEQPATCIAVTGTNGKTSVAGF 113

Query: 126 LTIALSSIKKT---YACIGSYNNHIGVPLTL---ARMPVDVDFGIFEL------------ 167
                + +         +G   +  G+P        +       + E+            
Sbjct: 114 ARQIYARLGHKAASMGTLGVVVSGPGIPDQQLTPPGLTTPDAADVAEMMARLAGMGVTHL 173

Query: 168 --GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S  G  +     VR   A  T     HL     +    +AK  +FE L   G   +
Sbjct: 174 AVEASSHGIDQRRLDGVRLAAAGFTNFTQDHLDYHGTMGCYRAAKLRLFETLLPRGKTAV 233

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              DS      A +     +TI S G  +    +L       +   +++  Q +  +V+ 
Sbjct: 234 LNADSDAFPAFASAAVTSGQTILSVG-HEGQGLKLVSHTPVPQGQRLKIAAQDRVFDVLL 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G   A N+L+  G+V     D+D  I AL       GR +R       G      E+
Sbjct: 293 PLAGDFQASNVLVAAGLVLATGEDLDATIAALEHLEGAAGRLQRVGTGARGG------EA 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y     +     +VL+ + PH  G+ I V G     G         L   ++        
Sbjct: 347 YVDYAHTPDGLETVLAALRPHTRGKLIVVFGA----GGDRDRGKRPLMGEIAARLADVAI 402

Query: 406 LSGFHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  + + A      L  +                 + L DGDV+VV  K 
Sbjct: 403 VTDDNPRSEEPASIRAAILAAAPGAQEYGDRREAIRAGAALLADGDVLVVAGKG 456


>gi|320106152|ref|YP_004181742.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
 gi|319924673|gb|ADV81748.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Terriglobus
           saanensis SP1PR4]
          Length = 452

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/438 (16%), Positives = 143/438 (32%), Gaps = 61/438 (13%)

Query: 57  ILHAVQKGAG---------------LVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAV 100
           I   +  GA                L+VV+  +         +   GV+ +     +LA 
Sbjct: 46  IAELLAMGAAVETGGHGLLTFRRQDLIVVSPGVPMDTPELKQVRALGVEMIGEV--ELAS 103

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVD 159
                   +++AITGS GKTTT  ++   L               +IG+P+        D
Sbjct: 104 RFL---NGSVVAITGSNGKTTTTSLIGEILRGAGV----PTLVGGNIGLPVVEMVAESTD 156

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    L  +        P IAV+  I P HL      E+ A AK  I E    
Sbjct: 157 TTWSVLEISSFQLETVETFA----PKIAVVLNITPDHLDRHGTFEKYAEAKTRITEMQTP 212

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN +D   +++ AK      +  +   +                      + +  
Sbjct: 213 ADFLVLNAEDKPTQMVAAK---TKAQIFWFSPRRPIKQGAFVHGDSILFLPREGGKAEPV 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H  +N+L  +    +     +   + +  F   + R    +        
Sbjct: 270 MPVSEIPLVGAHNVENVLAAVCACRLAGVSSEKIREGVRGFKAVDHRL---QFVAEVAGV 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  +   A++         EG  + +LG     G+   S + +L ++L   
Sbjct: 327 KYYNDSKATNVDATAKALASF-------EGNVLLILG-----GKDKGSDYTELNDLLRER 374

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
            +  V+  G     ++  L   + + ++ET++            GD V++    +S    
Sbjct: 375 VV-TVYTIGSAAEKIETQLAGVMTLKHAETLERAVALATEDAKAGDTVLLAPACASFDQF 433

Query: 453 -----NSCGFYRLINLLL 465
                    F R +  + 
Sbjct: 434 ESYEHRGREFVRFVTEIK 451


>gi|260463536|ref|ZP_05811735.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259030627|gb|EEW31904.1| Mur ligase middle domain protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 434

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/358 (20%), Positives = 146/358 (40%), Gaps = 17/358 (4%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
           T I +TGS GK+T   +L   L++ + TYA + +   +  V     RM    +VD+ +FE
Sbjct: 31  TFIGVTGSSGKSTVTALLGHILAAHRPTYARVLANTFNSLVSTLYKRMTQAGEVDYVVFE 90

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
            G S +  IR +  +++PH+AV+T +   H++ F  +E +A  K  +   L   G   LN
Sbjct: 91  AGASGIDTIRPMAEMLQPHVAVVTMVRLEHVARFRTLENVAVEKRAMVSALRPDGLAVLN 150

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVH 285
            DD +   + A         + +FG ++ AD+++   +    ++    +  +G  ++   
Sbjct: 151 ADDPYVADMAA----GAGCRVVTFGMAETADYRVTDIRAAYPDRLTFSIHWRGGLLQPET 206

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                H     +  +     L    D     ++ F P   R               I ++
Sbjct: 207 PFPAEHFWLPTVAAVATALELGVPPDKVAAQVATFQPVVNRCAVLVTEGGPQ---FILDA 263

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
             A   S+      L  ++     R+  VLG + +    ++ +    A   +   +  V 
Sbjct: 264 AKAPWHSINL---ALDMMAKATSSRKRIVLGQISDYAGSTKKY--AFAYQTARGIVDQVI 318

Query: 406 LSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            +G +    + +        + E  T   +   I+ + V G++++VKSS+S    R+ 
Sbjct: 319 YTGDNAHRSRASQTDRDSGRFVELRTAKEVSDHIKRTAVPGELILVKSSSSLHLERIA 376


>gi|331701599|ref|YP_004398558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128942|gb|AEB73495.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 511

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/469 (12%), Positives = 129/469 (27%), Gaps = 58/469 (12%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
             + IS +S+S+     FF  KG ++    ++  A Q GA   +          +  IP 
Sbjct: 30  PFDQISYNSKSVTDNCLFFC-KG-NFK-SAYLDDARQNGATAYMSEKTYQ----NAGIPG 82

Query: 86  FGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY------ 137
             V ++  A++ ++ A     + +   IA TG+ GKTT+       L    +        
Sbjct: 83  IIVKNIQKAMSLVSAAFFGFPQDQLPTIAYTGTKGKTTSAYFTKAILDQTYQRKVALSST 142

Query: 138 -------ACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                         +++  P       +        +   + E+  S     +   + + 
Sbjct: 143 INTVVGLKPEDVVKSNLTTPESLDLFTMMRKAADNGMSHLVMEV--SSQAYKKNRVYGLH 200

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + V   I+P H+              +    +     +         ++  A      
Sbjct: 201 YDVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSDVCVLNADGTHLTDIFYAAKATTQ 260

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT---- 299
            + I+ +G++                    +      +              +       
Sbjct: 261 PENIFIYGRAGQNQETEFPVDVEYRSLKDSLTENQIQVTARTAKAKQLNIDGVYRIGIPG 320

Query: 300 ------LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                     +I +A +      ++          R          T+  + Y  N  S+
Sbjct: 321 DYNEGNAVAAAITSALMGAKPTEIAYGLANTTVPGRMEIYQTHDHGTVYVD-YAHNYGSL 379

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----F 409
            + +  L + +P+  G+   + G   + G   +     L + ++         +      
Sbjct: 380 HSVLDFLKKQAPN--GKVTVITGSTGDKGIDRREG---LGKAINEAADQAYLTTDDPATE 434

Query: 410 HVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               +   +   I        Y            S    GD+VVV  K 
Sbjct: 435 DPQQIAKEIAAHIDTSKVATTYIPDRKQAITKAVSESQKGDLVVVAGKG 483


>gi|206602137|gb|EDZ38619.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6- diaminopimelate
           ligase [Leptospirillum sp. Group II '5-way CG']
          Length = 509

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 149/475 (31%), Gaps = 56/475 (11%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
             G  P   +N ++ DSR +     F    G  +   +F+  A+ +GA  +V + +    
Sbjct: 21  VCGRFPDRVLN-LTDDSRQVEEGALFLIRPGEGF-RWEFVNEALDRGAFYLVADRNAFPE 78

Query: 78  IGSLSIP---------VFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEML 126
           I S             +  V+++  ++ +LA +      S   +I +TG+ GKTT+  + 
Sbjct: 79  IDSRPALSSRIRESAGLSLVENLPRSVGQLASSWWGFPSSSLKVIGVTGTNGKTTSSFLT 138

Query: 127 TIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMS 170
                +       IG+    +G                  L    +   +     E+  S
Sbjct: 139 RSVCRAGGLPCGLIGTVVFDVGDGETEAPQTTPGAIQIQSLFAESLQNGLKSVSMEV-SS 197

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYD 228
           H  +   L   +   +   T +   HL     +E    A  K  ++E  + T  + + + 
Sbjct: 198 HALDQDRLAGTI-FSVVHFTNLTRDHLDYHRTMEAYFEAKRKLLMWENPDGTHPVAVVHT 256

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
              +    AK      + + ++G+  +A  +              ++     M +     
Sbjct: 257 GDEYGARLAKELERDGRRVLTYGEGADAMIRPIHVDVGLSGIRGTLRTSRGEMSIDSSLS 316

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G++  QN+L  +G    L    +   + +       GR +R               + +A
Sbjct: 317 GHYNLQNILGAVGCGEALGLSTEKIAEGIHSLSGVPGRFERVDSPAGFSVIVDYAHTDDA 376

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                    ++LS + P   G+ I V G     G             ++      V L+ 
Sbjct: 377 -------LSNLLSAVRPVTRGKVITVFG----CGGDRDRGKRPRMGNVAGRLSDFVVLTS 425

Query: 409 -----FHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +  ++ D +   +                          GD VV+  K 
Sbjct: 426 DNPRTENPESILDEIEPGLRETGTPYVRVSDRKSAIFDAIRRARSGDAVVIAGKG 480


>gi|86749112|ref|YP_485608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
 gi|86572140|gb|ABD06697.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodopseudomonas palustris HaA2]
          Length = 485

 Score = 85.7 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 74/452 (16%), Positives = 140/452 (30%), Gaps = 34/452 (7%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
                V G+++DSR++ P + FFA+ G   DG  F+  A++ GA  V  +       G L
Sbjct: 17  AAALDVGGLAVDSRAVKPGDVFFALAGAKTDGARFVAAAIEAGAVAVAGDHP---PAGDL 73

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           ++P   + +   AL   A     +   TI A+TG+ GKT+           +    A IG
Sbjct: 74  AVPFVRLTNPRRALALAAARMFPQQPQTIAAVTGTSGKTSVAAFTRQIWQRLGHASASIG 133

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIA 187
           +             +       +                L  S  G  +F    VR    
Sbjct: 134 TIGLVTPTRSVYGSLTTPDPIALHRSLDAIAREGVTHLALEASSHGLDQFRLDGVRVAAG 193

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  H+     +    +AK  +F  L   G   +   D         +       +
Sbjct: 194 GFTNLSRDHMDYHPDVAHYLNAKLRLFRDLVVDGGAAVISADHDCSAEVIDAARARGLRL 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S G++ +A   +R      +     + L         H       Q     +    ++ 
Sbjct: 254 ISVGRNGDAGAGIRLIAAAVDGFAQRLTLDHAGRNYQVHLPLVGEFQIENALVAAGLVIG 313

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D A    ++ H +   G+        G    +D ++  +  +       L  + P+ 
Sbjct: 314 TGGDPAAVFAALDHLEGAPGRLELVGERNGAPVFVDYAHKPDALA-----KSLQALRPYA 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
           + + + V G     G    +    L   ++  +   V ++  +             L  +
Sbjct: 369 KRKLVVVFGA----GGDRDAGKRPLMGAIAAESADAVIVTDDNPRREDPATIRAAILAAA 424

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GD +V+  K 
Sbjct: 425 PGAREIGDRAEAIRTAIGELQPGDALVIAGKG 456


>gi|322377016|ref|ZP_08051509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
 gi|321282823|gb|EFX59830.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sp. M334]
          Length = 481

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 151/505 (29%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH          + I  DSR    +  FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F++ A+ +G G  V   D       + IP   V D+  A++ +A+      + K  +
Sbjct: 60  -KEFLISAISQGLGWYVAEEDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMKNSR---AVIINSDMDHFSVLKEQVADQDHDFYGSQSDNQIENSKAFSFSARGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E +P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEAYP 471


>gi|119358487|ref|YP_913131.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
 gi|158512610|sp|A1BJY0|MURD_CHLPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119355836|gb|ABL66707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 464

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 119/362 (32%), Gaps = 32/362 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A       KA II ITG+ GKTTT  ++     +   T+        +IG P +   +
Sbjct: 97  EVAYWF---CKARIIGITGTDGKTTTATLVHRIFETDGMTHRYRAFSVGNIGQPFSSRVL 153

Query: 157 PVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
            +  +   + EL    L          RP ++VIT I P HL  +   +   A  K  I+
Sbjct: 154 TMRPEDVAVIELSSYQL----EGCCTFRPDVSVITNITPDHLDRYEGELHNYAQTKYRIY 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-------QLRKWKQCS 267
               K  T+  N DD       A +       I  FG     +        +    +   
Sbjct: 210 AHQGKEDTLVYNDDDPLLHDHFASNRETLPCRIVPFGIGCKPEHAGFAAAVRFCDHRIVF 269

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +       +      +     G H   N L  +     L    +    AL  F   E R 
Sbjct: 270 DAGAKSENIIEAEDFLKRSFRGRHNIANALAAVAAARALGIGNEAIRSALQGFSGVEHRQ 329

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                         I++S   N  ++  A+  +        GR + + G     G    S
Sbjct: 330 ---EFVRTLDGSDWINDSKATNINALSQALETV-------PGRMVLIAG-----GRDKGS 374

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + ++A  +    ++ +   G     L  A    + V  + +++      ++ +  G  V
Sbjct: 375 DYREIAG-IVRKKVAALVAIGEAREKLCAAYGGMVDVRSANSLEEAVSLARALVEPGQTV 433

Query: 448 VV 449
           + 
Sbjct: 434 LF 435


>gi|167740315|ref|ZP_02413089.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 14]
          Length = 189

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 57  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 112

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 113 GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 171

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 172 VVDALANE 179


>gi|86608711|ref|YP_477473.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557253|gb|ABD02210.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 510

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 85/491 (17%), Positives = 149/491 (30%), Gaps = 64/491 (13%)

Query: 6   TFHDLLQAIQGH---SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI----- 57
           T   LL         + G +    V G+  DSR + P + F  + G   DG  F+     
Sbjct: 7   TLSKLLHQAGIQPQLAQGSLEGVQVWGLCADSRQVQPGDLFLGMPGSRVDGGSFVAQALA 66

Query: 58  ---------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-- 106
                      A +        +    A  GS  + V     +  A+ ++A A       
Sbjct: 67  AGAVAALISQEAWE--------SVSGEAGWGSQPVLVLPRASLNRAVAQVAAAFYGFPAR 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLAR 155
           + T++ +TG+ GKTTT  ++   + +  ++ A +G+  N               P  L R
Sbjct: 119 QLTLVGVTGTNGKTTTTHLIEHLVQAAGRSAALLGTLYNRWPGYSEVASHTTLFPPELQR 178

Query: 156 MPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +      E   + +S     +          AV T +   HL     +E    AKA 
Sbjct: 179 SLREAQRAGAEVAVMEVSSHALAQDRVWGCSFAAAVWTNLTQDHLDFHGSMENYWQAKAT 238

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG-KSKNADFQLRKWKQCSEQSW 271
           +F      G   +N DD+    L            YS               +       
Sbjct: 239 LFRQEYLQGRAVINADDAGGRRLLQAIRPDLQPWAYSLQPLQGIPGLWPSNVQLHPSGLQ 298

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +     +  V    +G     N+L  +G+   L   V+    AL  F    GR +R  
Sbjct: 299 ATLHTPSGAFAVAAPLVGSFNLANLLAAVGVALHLGIPVEIIQSALPHFPGVPGRMERV- 357

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q    ++D ++  +        ++L  +    +G+ I V G     G         
Sbjct: 358 TLPGQDIAVIVDYAHTPDGLE-----NLLKALRSQVQGQLICVFG----CGGDRDRGKRP 408

Query: 392 LAEVLSLYNISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
               ++      V ++  +            +   +P S                  +  
Sbjct: 409 QMGRIAATWADQVIVTSDNPRTEDPQQILRDILAGIPGSPRAVEV-DRRQAIRLAILAAQ 467

Query: 443 DGDVVVV--KS 451
            GD VV+  K 
Sbjct: 468 PGDTVVIAGKG 478


>gi|145641283|ref|ZP_01796863.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274120|gb|EDK13986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 99

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 15/106 (14%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAAR 103
             GA  VV  T++ +   ++    ++PV     +   L+ LA    
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFL 99


>gi|167721346|ref|ZP_02404582.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei DM98]
          Length = 152

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 20  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 75

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 76  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 134

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 135 VVDALANE 142


>gi|167896008|ref|ZP_02483410.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 7894]
          Length = 160

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 28  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 83

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 84  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 142

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 143 VVDALANE 150


>gi|227874381|ref|ZP_03992565.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
 gi|227839789|gb|EEJ50235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sinus F0268]
          Length = 456

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 136/395 (34%), Gaps = 46/395 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V  + +  IP+           ++   A   SK  + A+TG+ GKTTT  ++   L
Sbjct: 80  DEPYVKMLSTAQIPII---------GEI-ELAYQSSKGKLCAVTGTNGKTTTVSLIGEIL 129

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVI 189
            S       +     +IG P T   +  +     + E+    L           P+++ I
Sbjct: 130 KSEYSDTHVV----GNIGNPFTAEALETEEQSATVCEVSSFQL----ETIVDFHPNVSAI 181

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I P HL     ++   + K  I E  E+  +I LNY D        K         +S
Sbjct: 182 TNITPDHLDRHKTMKNYIAVKESIAENQEEEDSIVLNYMDPELRKFGKKRSLKPKVLWFS 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +      +        +  + + + + +        H +G H  +N+L  +G+   + 
Sbjct: 242 SEEEPKDTKEKESLFLRGDTFYYKKEDKEEKLFTTKDVHLLGKHNYENILCAVGVGLKMG 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D  IK    F P E R         +      ++S   N  +   A+  +       
Sbjct: 302 VPMDKIIKVCKKFKPVEHRI---EFVRERSGVKYYNDSKGTNVDAAIQALRAM------- 351

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSI--H 423
            G  + + G            H+D    +  +   + ++ L G     + +   ++   +
Sbjct: 352 PGPVVLIGGG--------YDKHVDFDPWVKEFKGRVKYLVLIGETRNQIAETAKKNGFQN 403

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
           V ++E MD       +    GD V++    +S   
Sbjct: 404 VMFAEDMDEAVKDCAAYADPGDYVLLSPACASWGM 438


>gi|325694972|gb|EGD36876.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK150]
          Length = 481

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 161/514 (31%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSRQADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVSAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANDRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     F+++K +  ++      +   +   D +   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSRAFSFEATGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLKDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKVFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTEREG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVAYPGDYALAEKY 480


>gi|167912655|ref|ZP_02499746.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia pseudomallei 112]
          Length = 158

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 26  TVIDDTYNANPDSMLAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 81

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 82  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 140

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 141 VVDALANE 148


>gi|315039137|ref|YP_004032705.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325957608|ref|YP_004293020.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|312277270|gb|ADQ59910.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1112]
 gi|325334173|gb|ADZ08081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus 30SC]
 gi|327184253|gb|AEA32700.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus amylovorus GRL 1118]
          Length = 523

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/468 (13%), Positives = 122/468 (26%), Gaps = 63/468 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+         +    K ++     K                   +      
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETAHFDEIYAAATTTTNPDSI 266

Query: 246 ------TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHM 292
                    +       DF+    +   +++  ++            + +     +G   
Sbjct: 267 YLFARENFENPDLKVPIDFRFASQELDMKETRFKLYCASDKAKKLPINGDYTLKMLGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   + D   K +         G+            ++D ++N    +
Sbjct: 327 ESNGTAAIIGAGLAGLNHDQCAKGIRD---VTIPGRMQTERTKSHGMVVVDYAHN---KA 380

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
              A+    Q         + V       G+   S     +E L+ Y       +     
Sbjct: 381 SMMALMSFMQNEFDNPKIIVVV----GAPGDKGVSRRPGFSESLTAYADKAFLTTDDPGF 436

Query: 409 FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
               ++ + +   I     +               +     DVV++  
Sbjct: 437 EDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPDDVVLICG 484


>gi|307708388|ref|ZP_07644854.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
 gi|307615487|gb|EFN94694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis NCTC 12261]
          Length = 481

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 75/493 (15%), Positives = 144/493 (29%), Gaps = 46/493 (9%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH          + I  DSR    +  FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDDLFREIIDQGHYHYNYSHVIFDTICYDSRKAKEKSLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F++ A+ +G G  V   D       + IP   V D+  A++ +A+        K  +
Sbjct: 60  -KEFLISAISQGLGWYVAEKDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A TG+ GKTT        LS   +            G     + +       +F++ M+
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQGHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDM-MN 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              +      ++                 +    ++        + +             
Sbjct: 173 QAVQNDRTHLIMEVSSQAYLV-----KRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFY 227

Query: 231 FFELLKAKSHA---LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
              LL   S A         +S  K +  D     +   S+      +    S      G
Sbjct: 228 HKRLLMENSRAVIINSDMDHFSVLKEQVEDQDHDFYGSQSDNQIENSKAFSFSATGKLAG 287

Query: 288 IGYHM---AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N    +           +              G+        G    ID 
Sbjct: 288 DYDIQLIGHFNQENAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFIDY 347

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           ++N +         +++ +  H  G+   VLG     GE  +    D   +L+ +    V
Sbjct: 348 AHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DFGLLLNQHPEIQV 399

Query: 405 WLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG-DVVVVKSSNSCG 456
           +L+         +A+ D +    +  V              +      D V++       
Sbjct: 400 FLTADDPNYEDPMAIADEIRSYINHPVEKIADRQEAIKAAMAITNHELDAVIIAG-KGAD 458

Query: 457 FYRLINLLLEEFP 469
            Y+++    E +P
Sbjct: 459 CYQIVQGKKEAYP 471


>gi|87199150|ref|YP_496407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87134831|gb|ABD25573.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 482

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 90/472 (19%), Positives = 156/472 (33%), Gaps = 44/472 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L A             V G +ID R +AP   F A  G  ++G DFI  AV+  
Sbjct: 1   MKLGAILDAAGYPV--AAADANVTGFAIDHRKVAPGTVFGAFPGTRFNGEDFIADAVKA- 57

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDD--VLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
                    +VA   ++      V D     A   LA         T++A+TG+ GKT+T
Sbjct: 58  -----GAVAVVARPEAVVEGAVHVADAEPRRAFAALAAQFFQPVPETVVAVTGTNGKTST 112

Query: 123 KEMLTIALSSIKKTYACIGSYN------------NHIGVPLTLARMPVDVDFGIFEL--G 168
            EM         ++ A IG+                  +   L+ M      G+  +   
Sbjct: 113 VEMTRQIWRMAGRSAASIGTLGVTTADESVSTGLTTPDIVTFLSNMTGLAREGVTHVAYE 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S  G  +F    +R      T ++  HL     +E+  +AK  +F+ +   G + + + 
Sbjct: 173 ASSHGLSQFRNEGLRVIAGAFTNLSRDHLDYHPTMEDYFAAKMRLFDHVVDDGGVAVVWM 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D  +     +        + S G+ +    +L           +EV   G   ++    I
Sbjct: 233 DDEWSGRAVEHVRRRGLRLLSVGE-QGETIRLLARTPTQLGQVLEVAFDGARRKISLPLI 291

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G + A N L++ G+      D      AL+   P  GR          G    +D ++  
Sbjct: 292 GAYQAANALVSAGLAIASGIDAGQVFDALARLQPVRGR-LERAAINRAGAPVYVDYAHTP 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +          ++ + PH +GR I V G     G              +      V ++ 
Sbjct: 351 DAIEA-----AIAALRPHVKGRLITVFGA----GGDRDEGKRPEMGRAACAGSDLVIVTD 401

Query: 408 ----GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               G    A++ A+      +               +     D+V+V  K 
Sbjct: 402 DNPRGEDPAAIRAAIMAGCADNAREIGDRRSAIAAAIAEAGRDDIVLVAGKG 453


>gi|213585692|ref|ZP_03367518.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 338

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 112/336 (33%), Gaps = 21/336 (6%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL----SIPVF 86
           ++DSR  A  + F A+ G   DG  +I  A+ +G   ++      AS G +     +PV 
Sbjct: 2   TLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVV 61

Query: 87  GVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI-KKTYACIGSY 143
            +  +   L+ LA            ++A+TG+ GKTTT ++L      + + +       
Sbjct: 62  YLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVG 121

Query: 144 NNHIGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIAVIT 190
           N  +G  +                            + +S  G ++     ++   +V T
Sbjct: 122 NGLLGKVIPTENTTGSAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL     +    +AK  ++        I    D+     L +   A+ +      
Sbjct: 182 NLSRDHLDYHGDMAHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHI 241

Query: 251 GKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + +  + +    +       +         E+    +G     N+L+ L  +  L   
Sbjct: 242 NPNCHGRWLKAEAVEYHDRGVTIRFASSWGEGEIESCLMGAFNVSNLLLALATLLALGYP 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +   +K  +   P  GR + +              +
Sbjct: 302 LTDLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAHT 337


>gi|118581149|ref|YP_902399.1| Mur ligase middle domain-containing protein [Pelobacter propionicus
           DSM 2379]
 gi|118503859|gb|ABL00342.1| Mur ligase, middle domain protein [Pelobacter propionicus DSM 2379]
          Length = 406

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 140/377 (37%), Gaps = 18/377 (4%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R   K T IA+TGS GKT+T   L   LS        I        +   L R+    
Sbjct: 23  CRRFYDKTTAIAVTGSCGKTSTTHFLGKILSDRDSCRIGILFNCRKAII-KNLRRVNSSH 81

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            F + E+G+   G +     L+RP I ++T++   H  NF  +E  A  K ++ E L ++
Sbjct: 82  RFVLQEVGVEGTGCMNERLPLLRPRIGIVTSVGQDHYCNFRTLEATAFEKGKLIEFLPES 141

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGK 279
           G   LN DD     +  +S A     + ++G  + AD +    +    E+  + V  QG+
Sbjct: 142 GVAVLNADDPHVLAMARRSKA----RVLTYGLWEEADVRGSDIRCAWPERLSLAVTYQGE 197

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           S+ +     G  +A ++L  +        D+       +  H  E   +R          
Sbjct: 198 SVRIETGLFGSLLASSILAAVCGALAAGIDLKQCA---ASLHAVESFPRRMTIHATSQRA 254

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I ++  A          VL  ++     R+  V G   +    S S +  +A      
Sbjct: 255 WYICDTAKA---PYWTVAKVLEPMTDAAAPRKTVVFGSFSDTSGSSSSKYRSMAREALNV 311

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
               V+  G     ++  L           E++      +   +V  +++++KSSN    
Sbjct: 312 A-DRVFFVGNKAQHIRRLLTPETDGRLFMVESLQAAARLLAEDVVADELILIKSSNMEHA 370

Query: 458 YRLI---NLLLEEFPAI 471
            RL    + LL  +   
Sbjct: 371 ERLYFSQDRLLNCWKPT 387


>gi|167817533|ref|ZP_02449213.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei 91]
          Length = 162

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 30  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 85

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 86  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 144

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 145 VVDALANE 152


>gi|167920622|ref|ZP_02507713.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate--D-alanyl-D-alanyl ligase [Burkholderia
           pseudomallei BCC215]
          Length = 166

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 34  TVIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 89

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G       DA       H+ +    +   + ++      ++VK S      R
Sbjct: 90  GIDALFALGAATRPACDAYGAGAR-HFDDAAALVAALLAANFGAHATLLVKGSRFMKMER 148

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 149 VVDALANE 156


>gi|116492429|ref|YP_804164.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pediococcus pentosaceus ATCC 25745]
 gi|116102579|gb|ABJ67722.1| UDP-N-acetylmuramyl tripeptide synthase [Pediococcus pentosaceus
           ATCC 25745]
          Length = 507

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 70/444 (15%), Positives = 137/444 (30%), Gaps = 51/444 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            GIS DSR++ P   FF  KG ++   +++  A Q GA   V   +         +    
Sbjct: 30  TGISYDSRTVKPGYMFFC-KG-NFKP-EYLSVARQNGATTYVSENEYPE---GTGMTAII 83

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V +V  A+  L+       ++   II ITG+ GKT++       L+        + S  +
Sbjct: 84  VTNVTRAMAVLSATYYNFPQNDLFIIGITGTKGKTSSAYFAHSILNQKYPNQVALFSTID 143

Query: 146 HIGVPLTL------------ARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P                 +  D+   +        + +S    +R   + ++    
Sbjct: 144 RIVGPKPEDQFKSDLTTPESMNLFHDMRVAVDNGMKYLVMEVSSQAYLRDRVYGLKFDCG 203

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +   I P H+        E+    K ++    ++                   +      
Sbjct: 204 IFLNITPDHIGRNEHKDFEDYLHCKLQLMVNSKRCIIDADTDRFDDVFGAAKATTDPEQI 263

Query: 246 TIYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++S        +   Q  +    S +  +           V      ++A +   +   
Sbjct: 264 YLFSADVENGGVDFLIQDEEDDLTSNRFTLVESSSKAEAFHVAGDYDLNVAGDYNQSNAT 323

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +I+ A +       +V   K          LN     ++   Y  N AS+ A +  L  
Sbjct: 324 AAIIAAALADVTYQDAVLPLKSIVIPGRMEHLNVPGHGVVFVDYAHNYASLHALLKFLKH 383

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
              + +G+ I V+G     G+   S      + LS       +L+               
Sbjct: 384 --QYHDGKVIVVVGSP---GDKGISRRAGFGQALSEQ-ADIAYLTTDDPA---------- 427

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV 446
                E  + +   I  ++  G V
Sbjct: 428 ----FEDPEQIIQQIMDNIKPGTV 447


>gi|227879194|ref|ZP_03997066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256844018|ref|ZP_05549505.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256849418|ref|ZP_05554850.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|262046085|ref|ZP_06019048.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|293380702|ref|ZP_06626751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|312976906|ref|ZP_07788655.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
 gi|227861197|gb|EEJ68844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus JV-V01]
 gi|256613923|gb|EEU19125.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus 125-2-CHN]
 gi|256713534|gb|EEU28523.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-1A-US]
 gi|260573415|gb|EEX29972.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus crispatus MV-3A-US]
 gi|290922742|gb|EFD99695.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus crispatus
           214-1]
 gi|310896234|gb|EFQ45299.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus crispatus CTV-05]
          Length = 523

 Score = 85.3 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 58/470 (12%), Positives = 116/470 (24%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
               I+P H+         +    K ++     K                   +      
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPDSI 266

Query: 245 -----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHM 292
                    +    +  DF+    +   +++   +            + +     +G   
Sbjct: 267 YLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   + D   K +                             +     
Sbjct: 327 ESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRMQTERTKKHGMV-------VVDYAHNK 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
                 +    +   + + I V+G   + G      F   L            +L+    
Sbjct: 380 ASMMALMRFMRNEFNDPKIIVVVGAPGDKGVSRRPGFSESLTAYA-----DKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G     ++ + +   I     +               +     DVV++  
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMATPDDVVLICG 484


>gi|268610479|ref|ZP_06144206.1| UDP-N-acetylmuramyl pentapeptide synthase [Ruminococcus
           flavefaciens FD-1]
          Length = 535

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 79/393 (20%), Positives = 156/393 (39%), Gaps = 28/393 (7%)

Query: 66  GLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V+V  ++++      SI  + ++D    L +             + ITGS GKT+ K 
Sbjct: 154 TAVLVPLSNIINKPIENSINKWYINDAKRILGEC-------PTLHKVGITGSYGKTSMKF 206

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            L   L+S   T     S+N  +GV +T+   +    ++ I E+G   + EI+ L  +  
Sbjct: 207 YLDELLNSKYNTLKTPESFNTPMGVTITIRNYLKPTHEYFICEMGARRVHEIKELCDIAE 266

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH  +IT++ P HL  F  IE + + K E+ + ++  G       D+       +  A  
Sbjct: 267 PHDGIITSVGPQHLETFGSIENVLNTKFELADCVKAKGGKIYFNGDNE----LIRKKAPE 322

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGI 302
            +    +G  +  D++       S  +   V    G+S       +G H  QN+L  +  
Sbjct: 323 YEGAILYGLQEGNDYRATDISVSSRGTEFTVTAPGGESHRFSTKLLGEHNVQNVLGAIAY 382

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                  ++     +        R    +        T ID++YN+NP+  +AA++VL  
Sbjct: 383 AHGTGIPLEKLTLPVKRIQAVPHR---LQLLDKGNGLTFIDDAYNSNPSGCRAALAVLEL 439

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHVLALKDALPRS 421
                   RI V   M E+G   +  + +  +  +     ++ L G      + + +  +
Sbjct: 440 FDA----CRILVTPGMVELGAKQEELNFEFGQEAAKS-CDYIVLVGKEQTKPIYNGIKDA 494

Query: 422 I----HVHYSETMDGLFLFIQS-SLVDGDVVVV 449
                +V+ ++ ++     +Q+       VV++
Sbjct: 495 GYDMNNVYVADGLNDALANVQAYQTDKKKVVLL 527


>gi|317050622|ref|YP_004111738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
 gi|316945706|gb|ADU65182.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfurispirillum
           indicum S5]
          Length = 439

 Score = 84.9 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 128/421 (30%), Gaps = 48/421 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVD----DVLGA---LNKLAVAARLRSKATIIAITG 115
            GA   +V+     +      P   V     D+      +           +  IIA+TG
Sbjct: 48  AGAV-TLVSGPGSIAKCLAEHPGLVVASPGVDIRSFDRPMVNDIELFYQEYEGAIIAVTG 106

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+T   ++   L     +         +IG+P     + +     + EL    L   
Sbjct: 107 TNGKSTVTALIAHILQQSGIS----AVAAGNIGLPALDT-LALGCQVTVLELSSFQL--- 158

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  RP IAV+  +   HL+ +   E    AK  IF          LN+DD     L
Sbjct: 159 -ETIQTFRPDIAVLLNVTEDHLNRYDTFEHYVDAKERIFLNQTAEDWCVLNHDDPVIRTL 217

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            + +H    +  +S    +  D  L    Q          L+           G H  +N
Sbjct: 218 TSDNHIPARRVFFSSRSRQMVDNFLNCTVQGVRGKVNGQLLEAP--ADRLCLEGLHNMEN 275

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +   L  V +     +     L  F P   R    R  +       ID+S   N  ++  
Sbjct: 276 VAAALAAVRLYGLSPEQIGTGLEGFAPLPHRMTLVREIVGV---RYIDDSKATNIGAVLK 332

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           ++     I     GR     GD  ++                  +   +   G     + 
Sbjct: 333 SLEGQKNIILIAGGRNKG--GDFAQLAG------------AVKASCKLILAIGEARHQIA 378

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            AL +S+ V  ++ M           V GD V++    +S             F + +  
Sbjct: 379 GALGKSVSVLLADDMADAVSQAWKQAVSGDTVLLSPGCASFDMFTSFEHRGAVFEQAVQQ 438

Query: 464 L 464
           L
Sbjct: 439 L 439


>gi|307150713|ref|YP_003886097.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
 gi|306980941|gb|ADN12822.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cyanothece sp. PCC 7822]
          Length = 496

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 155/470 (32%), Gaps = 67/470 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA------- 76
           +  V GIS +S +    + F  + G   DG +F              ++ + A       
Sbjct: 23  EKEVKGISTNSHACQLGDVFIGMPGTRVDGGEF-------------WSSAIEAGAIAAII 69

Query: 77  -------SIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
                     +    V  V+DV+    ++A A       +  +I +TG+ GKTTT  ++ 
Sbjct: 70  SPAAALQYPPTGDAYVIQVEDVVSVCAEIAAAFYGYPARQMKMIGVTGTNGKTTTTHLIE 129

Query: 128 IALSSIKKT---------YACIGSYNNHIGVPLT-------LARMPVDVDFGIFELGMSH 171
             LS  +                        P            +     +G+ E+  S 
Sbjct: 130 FFLSQCQYPTALLGTLYTRWAGYEQTAVHTTPFAAQLQEQLAQALKAGSQYGVMEV--SS 187

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +         +AV T +   HL     +E+  +AKA++F      G   +N DD +
Sbjct: 188 HALAQRRVQECPFEVAVFTNLTQDHLDFHQDMEDYFAAKAKLFSAEYLKGKAIINLDDPY 247

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            + L        + +        +A+F  R     +      +      +      +G +
Sbjct: 248 GKRLIDSLSREKVWSYSVS--DSSANFYTRDLCYEANGVSGILHTPIGEVAFYSPLVGQY 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N+L  +G V  L  D+   ++ L +F    GR +R   +  Q    ++D ++  +  
Sbjct: 306 NIANLLAAVGAVVSLGLDLKAIVQYLPLFVAVPGRMERVHLSDKQDISVIVDYAHTPDSL 365

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--- 408
                 ++L    P  EGR I V G     G+  ++    + ++ +      V  S    
Sbjct: 366 E-----NLLKAARPFIEGRMICVFG---CGGDRDRTKRPKMGKIAAELADVAVVTSDNPR 417

Query: 409 -----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  +  +   +P S+            L   +    GD V++  K 
Sbjct: 418 TEDPQQILKDILAGIPESVKPQVIADRALAILKAITEAKPGDGVLIAGKG 467


>gi|291563560|emb|CBL42376.1| UDP-N-acetylmuramyl-tripeptide synthetases [butyrate-producing
           bacterium SS3/4]
          Length = 484

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 65/457 (14%), Positives = 129/457 (28%), Gaps = 36/457 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
            +       V+ +  DSR   P   F  I+G   D H+FI   ++ G  +          
Sbjct: 5   LVCGSLDQNVDEVIYDSRKARPDSVFVCIQGSTRDSHEFIPDVLRAGCKV---LVVEKEV 61

Query: 78  IGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                + V  V+    AL +L  A       K   I ITG+ GKTTT  M+   L +  K
Sbjct: 62  EVPADVTVIRVESGRLALAELSAARFGYPAEKLITIGITGTKGKTTTSYMIKAVLEAAGK 121

Query: 136 TYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
               IG+    IG              V        V+       + +S    +      
Sbjct: 122 KTGLIGTNGAVIGDVKFPTSNTTPESYVVQDYFHKMVEAGCECCVMEVSSQALMLHRVGG 181

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +     + T I+P H+        EE    K+ +    +      L              
Sbjct: 182 IMFDYGLFTNISPDHIGPKEHKSFEEYLFYKSRLLTVCKTGIVNRLTDHYDEVVKDATCR 241

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    +     +  +         E S   +      + +       +    + + 
Sbjct: 242 LLTYALNGNADFMGDDIHYASNHDFVGIEFSIHGMLDGRVRVGMPGKFNADNALAALAVC 301

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
              +S  +  +D   K   +    + R        +      +   Y  N  SM++ ++ 
Sbjct: 302 TLALSGGSGVLDDHTKQAILGSLVKVRVDGRMEIAHVSKKCSVIVDYAHNAVSMESLLTT 361

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHV 411
           L    P      + V G         +    ++   ++   I     +           +
Sbjct: 362 LRDYHPKR---LVCVFGCGGNRARDRRYSMGEIGGKMADLCI---ITADNPRFEKNEDII 415

Query: 412 LALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVV 447
             ++  L ++   +           +   +  +GD++
Sbjct: 416 KDIEVGLAKTDGTYLVIPDRQEAIFYAIRNAEEGDMI 452


>gi|312862991|ref|ZP_07723230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
 gi|311101486|gb|EFQ59690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus vestibularis F0396]
          Length = 481

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 69/444 (15%), Positives = 129/444 (29%), Gaps = 37/444 (8%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP
Sbjct: 33  VTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A++ +A A     + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLSTM 145

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                G     + +       +F +    +        +     A +T         +  
Sbjct: 146 NTTLDGKNFFKSNLTTPESLDLFRMMAEAVDNGMTHLIMEVSSQAYLTK------RVYGL 199

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA---LGIKTIYSFGKSKNADFQ 259
           I ++        + +                LL   S A         + F   + AD  
Sbjct: 200 IFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLLENSRAVIVNSGMNHFGFVAEEVADKD 259

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT--LGIVSILTADVDTAIKAL 317
              + + SE +           +    G                   +    +  +++ +
Sbjct: 260 HDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLSCLRLGASLEDI 319

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                +     R           +  +  +   +       +L  ++ H +G+   +LG 
Sbjct: 320 KQGIAQTSVPGRMEILTQANGAKVFVDYAHNGDS----LDKLLQVVTDHQKGKISLILGA 375

Query: 378 MCEMGELSQSFHIDLAEVLSLYN-ISHVWLSG----FHVLALKDALPRSI--HVHYSETM 430
               GE  +    D   VL+ Y  +     +        LA+   +   I   V      
Sbjct: 376 PGNKGESRRK---DFGHVLNTYPEVDVTLSADDPNKEDPLAICQEIASHISRKVRIIVDR 432

Query: 431 DGLFLFI-QSSLVDGDVVVV--KS 451
           +         +    D VV+  K 
Sbjct: 433 EEAIKTAMAETTDSEDAVVIAGKG 456


>gi|104774695|ref|YP_619675.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116514822|ref|YP_813728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|122274446|sp|Q047T2|MURE_LACDB RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|123378345|sp|Q1G8B5|MURE_LACDA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|103423776|emb|CAI98782.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116094137|gb|ABJ59290.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325126516|gb|ADY85846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 516

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 124/469 (26%), Gaps = 65/469 (13%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR +     FF  KG    G    ++  A + GA   V             +    
Sbjct: 34  VSYDSRDVQNNSLFFC-KGA---GFRPTYLTMAKENGAIAYVAEQPYPE---GTGMHALI 86

Query: 88  VDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA------- 138
           V +V  A+  L+ A     +    ++  TG+ GKTT+   L   L  +            
Sbjct: 87  VRNVSKAMALLSAAFYSFPQDDLFLVGFTGTKGKTTSAYFLKGMLDQLNGGRTALLSSVD 146

Query: 139 ------CIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
                    ++ + +  P +      M   VD G+  + M  S     +     +   + 
Sbjct: 147 NILGPAPEDTFKSSLTTPESLDLFRDMRRAVDNGMTHMVMEVSSQAYKKSRVFGLTYDLG 206

Query: 188 VITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+        E+    K ++     K          +        +      
Sbjct: 207 FFLNISPDHIGVNEHPNFEDYLHCKLQLLVNSRKCIINAETDRFADVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +++    +N D +               + K     +  +      S E     IG   
Sbjct: 267 YLFARDGFENPDLKKPIDFRYKSVETDLAETKFTLTTASSKAHKLPISGEYTLQMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +     +   K +                  Q    ++ +  +     
Sbjct: 327 ETNATGAIIGAGLAGMSYEDCAKGIRHVTIPGR----METVTTQKHGLIVVDYAHNK--- 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----G 408
                 +          R I V+G   + G   +    +             +L+    G
Sbjct: 380 ASMLALMRFMRREFTTPRVIVVVGAPGDKGISRRPGFSESL----TAEADKAYLTTDDPG 435

Query: 409 -FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
             +   + + +   I     E       +       S     DVV++  
Sbjct: 436 FENAQDICEEIDAGIDHSKCETVIELDREKAIKEAISEAGPDDVVLLCG 484


>gi|317472438|ref|ZP_07931762.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
 gi|316900082|gb|EFV22072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Anaerostipes sp.
           3_2_56FAA]
          Length = 454

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 105/355 (29%), Gaps = 40/355 (11%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHI 186
             +  I K +        +IG P T   +    +   + E+    L           P +
Sbjct: 125 ALVGEIMKCFYSDVYVVGNIGTPYTSVALDTKDESIIVAEISSFQL----ETIQDFCPKV 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + +  I P HL     +E  A  K  I +       + LNY+D     +  +++A  +  
Sbjct: 181 SAVLNITPDHLDRHGTVEVYAKTKESIGKNQTGDQVMVLNYEDPVTRNMAERANARVVF- 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                   + D +L +     + S+M  + +          I      N    L  +++ 
Sbjct: 240 -------FSLDHELEEGVYFKDGSFMLAENKTVQTICTEADINLLGGHNYENILAAIAVS 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A +        +G   R             ++S   N  +    I  +++ +  
Sbjct: 293 HYMGVPAEQIRKGVSGFKGVEHRIEYVDTIKDVAYYNDSKGTNTDAAIKGIKAMNRPTFL 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
             G            G   ++ + D  E      +  + L G     +           +
Sbjct: 353 IGG------------GYDKKAEYDDWIE-AFDGKVKELILLGATAEKIGKTAEAHGFSRI 399

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            Y +T++    +     V GD V++    +S             F   +N L E 
Sbjct: 400 VYVDTLEEAVEYASKHAVSGDAVLLSPACASWGMFPNYEVRGDRFKEYVNKLKER 454


>gi|295693699|ref|YP_003602309.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate--l-lysi ne ligase
           [Lactobacillus crispatus ST1]
 gi|295031805|emb|CBL51284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus crispatus ST1]
          Length = 523

 Score = 84.9 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 57/470 (12%), Positives = 117/470 (24%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLFVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI- 244
               I+P H+         +    K ++     K                   +      
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETAHFDEVYAAATTTTNPDSI 266

Query: 245 -----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHM 292
                    +    +  DF+    +   +++   +            + +     +G   
Sbjct: 267 YLFARDNFENPDLKQPIDFRFSSEQLDMKETRFNLVCASDKARKLPINGDYTLKMLGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   + D   K +                             +     
Sbjct: 327 ESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRMQTERTKKHGMV-------VVDYAHNK 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
                 +    +   + + I ++G   + G      F   L            +L+    
Sbjct: 380 ASMMALMRFMRNEFNDPKIIVIVGAPGDKGVSRRPGFSESLTAYA-----DKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G     ++ + +   I     +       +       +     DVV++  
Sbjct: 435 GFEDPKSIAEEIDSGIDHSKCDVTIELDRNKAIHDAIAMATPDDVVLICG 484


>gi|145635583|ref|ZP_01791281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267145|gb|EDK07151.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 105

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS 106
             GA  VV  T++ +   ++    ++PV     +   L+ LA    +R 
Sbjct: 54  HSGASAVVSETELSSEHLTVEFIGNVPVVKYHQLARHLSSLADVFMIRP 102


>gi|222053876|ref|YP_002536238.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
 gi|221563165|gb|ACM19137.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geobacter sp. FRC-32]
          Length = 508

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 77/491 (15%), Positives = 154/491 (31%), Gaps = 59/491 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L++++    +       + G+  DSR + P   FFA+KG   DG+ FI  AV+ G
Sbjct: 1   MRLSQLVKSVAVLDMVGDVDPDITGLFYDSRKVQPGGLFFALKGVASDGYAFIEVAVKAG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTT 122
           A  VV+  D         I    V D   A++ +  A  A   +   ++ ITG+ GKTTT
Sbjct: 61  AVAVVIEDDRT----PADIAWVRVADGRLAMSLMAAAFYANPAAGLPVVGITGTNGKTTT 116

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARMPVDVDFGIFE------LG 168
             +L           A +G+ N   G               +   +   +        + 
Sbjct: 117 TFLLESIFEKGGLPAAVLGTVNYRFGDLSIPAPNTTPESVDLQQTLRKLVDAGAKGIVME 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG--LEKTGTIFLN 226
           +S     +        ++ V T +   HL     +E    +K  +F    +        +
Sbjct: 177 VSSHALQQRRIDGCSFNVGVFTNLTRDHLDYHLDMESYLQSKTRLFSELLVPDEKKPERH 236

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + ++G  K+AD      +         +      +E+   
Sbjct: 237 AVINTDDEYGRRIAQAAACPVVTYGIEKSADINAENVEFSVSGISCTLATPKGRIELRSM 296

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G     N++   G    L   +++  + L       GR        N    T++ +  
Sbjct: 297 LVGRFNLYNIMAAAGAGVALGLPLESIKEGLEHHGQVPGR---LERVENALGVTVLVDYA 353

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +   A      +VL  ++   +GR I + G     G         +   ++        +
Sbjct: 354 HTGDA----LENVLLTMTELKKGRIITLFG----CGGDRDKGKRPIMGEIAGRYSDLSII 405

Query: 407 SGFHVL------------------------ALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +  +                          + + A+ +       E           +  
Sbjct: 406 TSDNPRTENPAEIMAQVREGIVRLGICEYSSYEAAIFQEKGFVSIEQRQDAIRLAVKAAR 465

Query: 443 DGDVVVV--KS 451
            GD+V++  K 
Sbjct: 466 PGDIVLLAGKG 476


>gi|160872723|ref|ZP_02062855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
 gi|159121522|gb|EDP46860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsiella
           grylli]
          Length = 441

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 118/373 (31%), Gaps = 29/373 (7%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +   +I        L  L  +       ++A IIAITGS  K T   ++   +      
Sbjct: 70  DLNETTIRTIIEQHTLKPLGDI-ELFAQHARAPIIAITGSNAKGTVTSLIGKMIQRAHLN 128

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                +   +IG P          DF + E+    L      T+ +RP +A I  I+P H
Sbjct: 129 V----AVGGNIGKPALDLLNEPVPDFYVLEISSFQL----ETTYSLRPKLASILNISPDH 180

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L     +    +AK  I+   +                         I    +       
Sbjct: 181 LDRHKTLTAYINAKQRIYHQADIALWNR-----DDLNTFPQARTKKIISFGLTTTTPHAH 235

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +F L       +++++                G H   N +  L I   +       + A
Sbjct: 236 EFYLYNS---HQKNFIAKGHDRLLPVDALFIQGRHNWANAIAALTIGHAIGLPTKAMLTA 292

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F     R    +        T  ++S   N  +    ++ L+ + P   G+ I + G
Sbjct: 293 LCEFKGLPHRC---QWVKEFKGVTWYNDSKATNVGAT---LAALNGLGPSISGKIILIAG 346

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            + +  + S   H  +      + +  + L G     LK+ L +S  +     +      
Sbjct: 347 GLSKNADFSL-LHNPV-----KHYVKKIILIGRDAALLKNTLEKSTAIQTVSDLRHAVNL 400

Query: 437 IQSSLVDGDVVVV 449
              +   GD+V++
Sbjct: 401 AHETARRGDIVLL 413


>gi|300869516|ref|ZP_07114098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
 gi|300332489|emb|CBN59296.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oscillatoria sp. PCC 6506]
          Length = 516

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 152/503 (30%), Gaps = 72/503 (14%)

Query: 5   WTFHDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL--- 58
               +LL  I               V G++ +S +  P + F  + G   DG DF     
Sbjct: 1   MKLKELLATIPNISLSISHPALDSQVKGLATNSHACQPGDLFLGMPGTRVDGGDFWQGAI 60

Query: 59  -----------HAVQKGAGLVVVNTDMVASIG----------SLSIPVFG-VDDVLGALN 96
                       A +K     +      A                +P    V D+  A  
Sbjct: 61  ASGAIAALVSTQAAEK----ALEQGSGGAGERGSGGAGERGSEGEVPCIIPVVDMTQACA 116

Query: 97  KLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            +A A       +  ++ +TG+ GKTTT  ++   LS  +   A  G+       P    
Sbjct: 117 HIATAFYGYPGNQLKLVGVTGTNGKTTTTHLIEFLLSKAELPTALFGTLYTRW--PGFQE 174

Query: 155 RMPVDVDFGIFELGM--------SHLGEIRFLTH--------LVRPHIAVITTIAPAHLS 198
                  F +             S  G +   +H             +AV T +   HL 
Sbjct: 175 TAIHTTPFAVELQKQLAAAVEAGSKFGIMEVSSHALAQSRVLGCPFEVAVFTNLTQDHLD 234

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               +E+  +AKA +F      G   +N DD++   +    ++  + +  +      AD 
Sbjct: 235 YHRDMEDYFNAKALLFSSNYLKGRAIVNADDAYGRRIIDSLNSEQVWSYST--NDSKADL 292

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                K         +       +     +G +   N+L  +G    L  ++   +  L 
Sbjct: 293 WASDLKYEPNGVKGILHTPKGEADFYLPLVGQYNLSNLLAAVGAGLHLGLELSAIVLNLP 352

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F    GR ++ + +  Q    ++D ++  +        ++L    P   GR I V G  
Sbjct: 353 EFPGVPGRVEKVQISPVQDISVIVDYAHTPDSLE-----NLLKASRPFIPGRMICVFG-- 405

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKD----ALPRSIHVHYSETM 430
              G+  ++    + ++++      V  S          +       +   +        
Sbjct: 406 -CGGDRDRTKRPKMGKIVAELADVTVVTSDNPRTEDPERILQDVLTGIAPEVKPLVIGDR 464

Query: 431 DGLFLFIQSSLVDGDVVVV--KS 451
                        GD V++  K 
Sbjct: 465 AQAIRTAILEAKPGDGVLIAGKG 487


>gi|17229155|ref|NP_485703.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nostoc sp. PCC 7120]
 gi|21362694|sp|Q8YWF0|MURE_ANASP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|17135483|dbj|BAB78029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Nostoc sp. PCC 7120]
          Length = 496

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 153/479 (31%), Gaps = 45/479 (9%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI----- 57
               +LL  +    +   ++    V GI  +S +    + F  + G   DG +F      
Sbjct: 1   MKLRELLATVDSVENLPPVLADAEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFWPSAIA 60

Query: 58  ---------LHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                      AV+K       +V+ + +M  +  +++   +G       L  +      
Sbjct: 61  SGAIAAIVSPQAVEKNPPHDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLVGVTGTNGK 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFG 163
            +   +I    +  K +T  M T+             +    + +   LA+      +FG
Sbjct: 121 TTTTHLIEFFLTKAKLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQAVNAGCEFG 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH      +       + V + +   HL   S +E+  +AKA +F      G  
Sbjct: 181 VMEV-SSHALAQGRVLGCP-FEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPEYLKGRA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD++ + L        + +        +AD  +             +     ++  
Sbjct: 239 IINADDTYGQRLIKALSPEKVWSY--SVNDSSADLWMSDLSYEPNGVTGTIHTPEGNVSF 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +  +N+L  +G V  L  ++     A+  F    GR +R +   +Q    ++D
Sbjct: 297 RSPLVGQYNLENLLAAVGAVLHLGLNLQLIANAIPEFPGVPGRMERVQINPDQDISVIVD 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +        ++L    P   GR I V G     G             +       
Sbjct: 357 YAHTPDSLE-----NLLKAARPFIPGRMICVFG----CGGDRDRTKRPKMGKIVAELADL 407

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +++  +            +   +P ++                     GD V++  K 
Sbjct: 408 AFVTSDNPRTEDPDRILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466


>gi|58338066|ref|YP_194651.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus NCFM]
 gi|75357189|sp|Q5FI54|MURE_LACAC RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|58255383|gb|AAV43620.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine ligase
           [Lactobacillus acidophilus NCFM]
          Length = 523

 Score = 84.5 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 70/470 (14%), Positives = 132/470 (28%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKSNGANCYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+P H+              ++   +     I      +F E+  A +      +I
Sbjct: 207 FFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPDSI 266

Query: 248 YSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHM 292
           Y F +            DF+    +   +++  ++            + +     +G   
Sbjct: 267 YLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   + D   K +                        +   Y  N AS
Sbjct: 327 ESNGTAAIIGAGLAGLNHDQCAKGIRNVTIPGRMQTERTKEHGM-----VVVDYAHNKAS 381

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +  +       + + I V+G   + G      F   L+           +L+    
Sbjct: 382 MMALMRFMQN--EFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYA-----DKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G     ++ + +   I     +               +S    DVV++  
Sbjct: 435 GFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICG 484


>gi|227902756|ref|ZP_04020561.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
 gi|227869419|gb|EEJ76840.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus acidophilus ATCC 4796]
          Length = 532

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 70/470 (14%), Positives = 132/470 (28%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 43  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKSNGANCYVAEQPYPE---GKGMHALI 95

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 96  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGRTALISSVN 155

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 156 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 215

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+P H+              ++   +     I      +F E+  A +      +I
Sbjct: 216 FFLNISPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAETANFNEVYAAATTTTNPDSI 275

Query: 248 YSFGKSKN--------ADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHM 292
           Y F +            DF+    +   +++  ++            + +     +G   
Sbjct: 276 YLFAREDFENPDLDVPIDFRFASQELDMKETRFKLFCATDKAKKLPINGDYTLKMLGDFN 335

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +   + D   K +                        +   Y  N AS
Sbjct: 336 ESNGTAAIIGAGLAGLNHDQCAKGIRNVTIPGRMQTERTKEHGM-----VVVDYAHNKAS 390

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +  +       + + I V+G   + G      F   L+           +L+    
Sbjct: 391 MMALMRFMQN--EFNDPKIIVVVGAPGDKGVSRRPGFSESLSAYA-----DKAFLTTDDP 443

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G     ++ + +   I     +               +S    DVV++  
Sbjct: 444 GFEDPKSIAEEIDAGIDHSKCDVTIELDRKKAIHDAIASAGPDDVVLICG 493


>gi|307706212|ref|ZP_07643029.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
 gi|307618402|gb|EFN97552.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus mitis SK321]
          Length = 481

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/505 (15%), Positives = 150/505 (29%), Gaps = 70/505 (13%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           G+          + I  DSR    +  FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGYYHYNYSHVVFDTICYDSRKAKEKSLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F++ A+ +G G  V   D       + IP   V D+  A++ +A+        K  +
Sbjct: 60  -KEFLISAISQGLGWYVAEKDY-----EVGIPAIIVSDIKKAMSLVAMEFYGNPQKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP----------------LTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAYNILSQEHRPAMLSTMNTTLDGKTFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + E       + +N D   F +LK +          S   ++  + +   +    + +  
Sbjct: 232 LMENSR---AVIINSDMDHFSVLKEQVADQDHDFYGSQSNNQIENSKAFSFSATGKLAGD 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    ID ++N +         +++ +  H  G+   VLG     GE  +    D 
Sbjct: 336 TQKNGAKVFIDYAHNGDS-----LKKLINVVETHQTGKIALVLGSTGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG- 444
             +L+ +    V+L+         +A+ D +    +  V              +      
Sbjct: 388 GLLLNQHPEIQVFLTADDPNYEDPMAIADEISSYINHPVEKIADRQEAIKAAMAITNHEL 447

Query: 445 DVVVVKSSNSCGFYRLINLLLEEFP 469
           D V++        Y+++    E +P
Sbjct: 448 DAVIIAG-KGADCYQIVQGKKEVYP 471


>gi|21672877|ref|NP_660942.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium tepidum
           TLS]
 gi|30316059|sp|Q8KGD2|MURD_CHLTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21645929|gb|AAM71284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium tepidum
           TLS]
          Length = 465

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 139/423 (32%), Gaps = 50/423 (11%)

Query: 65  AGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A L +V+        ++  + +  IPV        +  +LA        A II ITG+ G
Sbjct: 69  AALCIVSPGIPQTVPVIREMHARGIPVV-------SEIELASWF---CPARIIGITGTDG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRF 177
           KTTT  +L    ++  +          +IG+P +         D  + EL    L     
Sbjct: 119 KTTTATLLHRICAAEGERKGFRAFSVGNIGIPFSSEVPGMTAADIAVLELSSYQL----E 174

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                RP+IAV+T + P H+  +   IE  A+AK  I        T+  N+DD       
Sbjct: 175 ACFDFRPNIAVLTNVTPDHMDRYGGSIEAYATAKYRIHARQGAGDTLIYNHDDPILRAHF 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA--- 293
            +S     + +    +++  D     +    +   +          +    I        
Sbjct: 235 DRSEPWPFRLVRLGLRAETLDVAPGDFVSVEDGEIVVRASGSTERLMRVDEIMKPGFRGE 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+   L  V+   A          V     G   R   A N      I++S   +  ++
Sbjct: 295 HNLYNALSSVAAALAAGVAPETMRGVLAGFGGVEHRQELAGNACGLNWINDSKATSVNAL 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           + A+  +           + + G     G    + +  +A+++    ++ +   G     
Sbjct: 355 RQALQSV-------PAGMVLIAG-----GRDKGNDYSAIADLVRE-KVACIVAIGESRRK 401

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           + DA      V  + ++       + +   G  V+     SS             F +L+
Sbjct: 402 IADAFRGVTPVVEAASLAEAVELARQNARPGASVLFSPACSSFDMFRDFEDRGRQFKQLV 461

Query: 462 NLL 464
             L
Sbjct: 462 REL 464


>gi|319941796|ref|ZP_08016118.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804729|gb|EFW01596.1| hypothetical protein HMPREF9464_01337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 510

 Score = 84.5 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 64/460 (13%), Positives = 136/460 (29%), Gaps = 49/460 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL 92
           DSR + P + F A+ G   DG  FI  A  +GA  V+   +         +P   V+ + 
Sbjct: 25  DSREVKPGDIFCAVPGEKVDGRTFIRVAAARGAAGVIYEAETSQRPEHYPLPAKPVEHLR 84

Query: 93  GALNKLAVAARLRSKATIIAITG-----------------SVGKTTTKEMLTIALSSIKK 135
             L ++A        A +  +                   +   + +  + T+ +    +
Sbjct: 85  ERLGEIAARFYDEPSAHMTGVAVTGTNGKTTTTFWTASLLTALGSPSGIIGTVGVFFAGR 144

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                            + +   +     F +  S +G  +         + V T ++  
Sbjct: 145 QIPAPHLTTPDAASLQGILKDLEETGAKSFVMEASSVGLDQGRMKGTHFKVGVFTNLSRD 204

Query: 196 HLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT-----IY 248
           HL     +E    A      + GL+       +     +     K+ +    T       
Sbjct: 205 HLDYHQTMEAYGEAKGLLFAWPGLKAAVLNASDAWSRKYADAAQKNGSEIWVTGLEGEAA 264

Query: 249 SFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           SFG++  A    + ++ +         +    +   V  H +G     N L      +  
Sbjct: 265 SFGQAFGAAHVLEAKQIEPSHRGMRFTLVCDKREFPVELHALGTFNVDNALEAAAAAAAC 324

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              ++  ++AL    P  GR + +               +   P +++ AI  L   +  
Sbjct: 325 GHPIEKVVRALEALTPPPGRMQIFESDGMPLGVVD----FGHTPDALEKAIECLIPNARA 380

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
             GR   V G     G    +    +   ++      V ++       +  A+ DA+ + 
Sbjct: 381 RGGRLWTVFG----CGGDRDAGKRPIMGEIAARLSDQVIVTSDNPRTENPQAIVDAIMQG 436

Query: 422 IHVH--------YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +                         +    D+++V  K 
Sbjct: 437 VQAVPGADQRTMAVVDRREAIHRAVFAADAKDIILVAGKG 476


>gi|94970658|ref|YP_592706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
 gi|122063234|sp|Q1IKG8|MURD_ACIBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94552708|gb|ABF42632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 453

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 129/380 (33%), Gaps = 41/380 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV G         +LA          +IAITGS GKTTT  +    L
Sbjct: 81  DQPQLEQARKQGIPVIG-------EIELAAQF---VPGHVIAITGSNGKTTTTSLCGDIL 130

Query: 131 SSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            S             +IG P ++ A++  D  + + E+    L  I       RP IA I
Sbjct: 131 QS----GGKKTLVGGNIGTPAISFAQLANDDTWSVLEISSFQLETIERF----RPEIAAI 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL      E+ A+AK  IFE   +     LN D+     +  +  +  +     
Sbjct: 183 LNITPDHLDRHGTFEKYAAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQ 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                    +  K      +       +           G H  +N+L  + +    +  
Sbjct: 243 HEVKHGTFVREDKIYFRDPKGE-----REIMPVADMLLKGAHNVENVLAAVCVGVAASVA 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   KA+S F   E R +              ++S   N  +   A+            
Sbjct: 298 PEQIRKAVSQFKAVEHRLEYTATVKGVD---YYNDSKATNVDATIKALESF-------SK 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
               +LG     G+   S +  L ++L       V+  G     + +A  + + V ++ET
Sbjct: 348 GVHLILG-----GKDKGSPYTVLNDLLHERA-KTVYTIGAAAAKI-EAEVKGVEVVHAET 400

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           ++          V GDVV++
Sbjct: 401 LENAVKLASQKAVKGDVVLL 420


>gi|160880607|ref|YP_001559575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
 gi|189082875|sp|A9KLU2|MURD_CLOPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160429273|gb|ABX42836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           phytofermentans ISDg]
          Length = 454

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 146/414 (35%), Gaps = 56/414 (13%)

Query: 70  VNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
            + D V  + S  IP+ G V        +LA      SK  I AITG+ GKT+T  ++  
Sbjct: 81  TDLDYVKELKSAEIPIIGEV--------ELAYNF---SKGKIAAITGTNGKTSTTTLVGE 129

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIA 187
            + +  K+   +     +IGVP T      + D   + E+    L  I       RP ++
Sbjct: 130 IMKTYYKSVFVV----GNIGVPYTQMVKNTENDSVTVAEMSSFQLETIE----TFRPDVS 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I  I P HL+    +E    AK  I +   K  T  LNY+DS+   +  +  A  +   
Sbjct: 182 AILNITPDHLNRHHTMEAYIEAKVNITKNQTKEDTCILNYEDSYLRTVSGRIPATILWFS 241

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                 +    +        ++    V             IG H  +N++  +GI   L 
Sbjct: 242 SVRELERGLFLRENHIIYRDDEKECVVCD-----VNELQIIGKHNYENVMAAVGIAIALK 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +D   +A++ F   E R         +      ++S   NP +   AI  +   +   
Sbjct: 297 VPMDFIREAVTKFRGVEHRI---EYVTTKRGVKYYNDSKGTNPDASIQAIKAMQTKTLLI 353

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVH 425
            G            G    S + D  +      ++++ L G     + +A  R    ++ 
Sbjct: 354 GG------------GYDKDSDYDDWIK-AFDDKVTYLVLLGQTREKIANAAKRLGVKNIV 400

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             +++     F       G+ V++    +S             F   ++ L +E
Sbjct: 401 LVDSLSEAVDFCAEHAGVGETVLLSPCCASWGMFKDYEERGMLFKEYVHALKDE 454


>gi|145630232|ref|ZP_01786014.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984513|gb|EDJ91936.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 105

 Score = 84.1 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 15/109 (13%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             L+   +L                ++ + +DSR +   + F AIKG   DG+ FI  A+
Sbjct: 5   TALFNLPEL-----------KNDIELHNMVLDSRKVKAGDLFVAIKGHQVDGNQFIDSAL 53

Query: 62  QKGAGLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS 106
             GA  VV  T++ +   ++    ++PV     +   L+ LA    +R 
Sbjct: 54  HSGASAVVSETELSSEHLTVAFIRNVPVVKYYQLARHLSSLADVFMIRP 102


>gi|323527435|ref|YP_004229588.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
 gi|323384437|gb|ADX56528.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1001]
          Length = 519

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 79/484 (16%), Positives = 148/484 (30%), Gaps = 53/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D LQ ++              +  D+RS+A  +AFFA      D   FI  A+++GA 
Sbjct: 14  IADALQWLRARVQPGA------HLHADTRSLAAGDAFFAYAVEGADNRPFIDGALERGAA 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+V  +        S  +  V  +      +A A           + +TG+ GKT+  +
Sbjct: 68  AVLVQPEGFGGAIDAS-TMLAVPALNELAGSIASAWYGDPSDSMLTVGVTGTNGKTSCSQ 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFELG 168
            ++ AL+++    A IG+     G+P  L                             + 
Sbjct: 127 WISAALTALGTRCAIIGTLGT--GLPGQLVHTGFTTPDAPQLQRSLAQLRHAGAKAVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +   +     IAV T +   HL      E   +AKA +F   E    +    D
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHHTFEAYEAAKARLFAWPELRAAVINRDD 244

Query: 229 DSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   LL + + HA  I            D   +        +                 
Sbjct: 245 AAGRRLLASTRGHARTIAYGLDSASKGTPDSTPQADALLLASNVRATATGTAFHLSTSDW 304

Query: 288 IGYHMAQNMLMTLGIVSILTA---------DVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    L    + ++L             D A+  L+      GR +R    L    
Sbjct: 305 GDADVEVQTLGAFNVSNLLGVLGALLAADVPFDAALAELARLESVNGRMQRLGGRLQNDE 364

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + Y   P +++  +  L  ++    G  + + G     G    +    L   ++ 
Sbjct: 365 PLVVID-YAHTPDALEKTLEALRPMAAARGGELVCMFG----CGGDRDATKRPLMGAIAE 419

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +  +         +   +  +      E      L         DV+V+
Sbjct: 420 KLADGVVVTSDNPRSEDPQSIIEQIAAGMKDASKARRIEDRASAILQAIRGAAREDVIVL 479

Query: 450 --KS 451
             K 
Sbjct: 480 AGKG 483


>gi|320528691|ref|ZP_08029843.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
 gi|320130901|gb|EFW23479.1| putative D-tyrosyl-tRNA(Tyr) deacylase [Solobacterium moorei F0204]
          Length = 506

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/463 (13%), Positives = 135/463 (29%), Gaps = 54/463 (11%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V  +S DS+ +     F   KG H+    ++  AV KGA   +   +       ++I
Sbjct: 30  NTVVALVSCDSQQVVRNTLFLC-KGVHFKA-QYLQDAVNKGAFAYLSEVEYPE----VNI 83

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV--------------------GKTT 121
           P   + +V  A+  LA         +  +I +TG+                     GK  
Sbjct: 84  PWIPLTNVRYAMANLATMYYNDPWKELNVIGLTGTKGKSTTTYYVKAILDTYLERVGKNE 143

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           +  + +I      + +    +    + +    +         +  + +S           
Sbjct: 144 SAVISSIGTYDGVERFESHLTTPEPLDLERHFSNAVESKIDFVT-MEVSSQALKYDRVLG 202

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           V   +A    I   H+S+           +++    + T  +     D   E+L A   A
Sbjct: 203 VNFSVAAFLNIGYDHISSVEHPTWEDYFASKLRIFEQCTYGLVNLDSDHCDEILDAAKAA 262

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + T      +  ADF      +       +V+      E      G     N L  + 
Sbjct: 263 KKVIT--FSEANDTADFYGYDVHKVGNDIVFKVRGSDFDEEFKLSMPGLFNVSNALCAIA 320

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I  +    V      L                 N    T I +  +   +       +  
Sbjct: 321 IARLYDIPVRDIQAGLYHAKVPGRMEI---YTSNDKKITAIVDYAHNQLS----FQKLFE 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-----LALKD 416
            +     G R  ++      G+ ++    DL E ++  N  +++L+         LA+  
Sbjct: 374 SVRSEYPGYRATII--FGCPGKKAKDRRHDLGE-IAGKNADYIYLTEEDAGEEDPLAIAH 430

Query: 417 ALPRSIHVHYSE-----TMDGLFLFIQSSLVD---GDVVVVKS 451
            + R++    +        +           +     V+++  
Sbjct: 431 EIARAVEKEKAPYEIIIDREKAIARAVEDAANVQGNTVILITG 473


>gi|229816609|ref|ZP_04446907.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
 gi|229807815|gb|EEP43619.1| hypothetical protein COLINT_03666 [Collinsella intestinalis DSM
           13280]
          Length = 518

 Score = 84.1 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 73/463 (15%), Positives = 120/463 (25%), Gaps = 50/463 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM-VASIGSLSI 83
             +   + DSR + P+  F   KG  +   +++L A+  GA   V   D  V       +
Sbjct: 35  IEIAYATDDSRRVVPRTLFVC-KGAAF-RREYLLQALAAGAVAYVSEVDYEVDGEVGHEV 92

Query: 84  PVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKTTTKEMLTIALSSIKKTYACI- 140
           P   V+D+  AL  LA AA         + A TG+ GKTT+   L   LS   +      
Sbjct: 93  PRVLVNDIRTALGLLADAAYDHPSGRVKVCAFTGTKGKTTSAYYLRSILSEHAREMGRPV 152

Query: 141 ----GSYNNHIGVP----------------LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                      GV                        V  +  + E   S        T 
Sbjct: 153 PALLTGVEYDDGVERGDSLLTTPESFELERRFANAASVGCEHVVME--ASSQAIKFRRTL 210

Query: 181 LVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            V   +   T     H+S      +E+   +K  +FE                       
Sbjct: 211 GVDFAVGAFTNFGEDHISPIEHPTLEDYLESKLLLFERCRVAVVNLDMDVAERALAAAHA 270

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S  +     YS  +   AD  +  + +        V+    + E++          N L 
Sbjct: 271 SRTVERVLTYSL-EDAAADVFVPSYVRTERGIRATVRTPRIARELMIPSPAVFNLSNALG 329

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L    D     LS  +           +                   M     
Sbjct: 330 AIACAEALGISADAIETGLSRAYAPGRMELYPSESGRIMGVVDY------AHNGMSLETL 383

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLAL 414
           +    + + +     V G     G   +     + E         V             +
Sbjct: 384 LRDLRASYPDREFAVVFGATGGKGVDRRE---TMGEAAGKLADRIVITEDDPGPEDPALI 440

Query: 415 KDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKS 451
            DA+ R++                      S      VV+V  
Sbjct: 441 CDAIARAVSAQGNENWQVVLDRSEAIRTAVSETHAPAVVIVTG 483


>gi|75907370|ref|YP_321666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
 gi|123610271|sp|Q3ME15|MURE_ANAVT RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|75701095|gb|ABA20771.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Anabaena variabilis ATCC 29413]
          Length = 496

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 154/479 (32%), Gaps = 45/479 (9%)

Query: 5   WTFHDLLQAIQG--HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI----- 57
               +LL  +    +   ++    V GI  +S +    + F  + G   DG +F      
Sbjct: 1   MKLRELLATVDSVENLPPVLADTEVKGIKTNSHACGAGDLFIGMPGTRVDGGEFWPSAIA 60

Query: 58  ---------LHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                      AV+K       +V+ + +M  +  +++   +G       L  +      
Sbjct: 61  SGAIAAIVSPQAVEKNPPSDEAVVISSNNMTKACAAIAAAFYGYPGQKLKLVGVTGTNGK 120

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFG 163
            +   +I    +  + +T  M T+             +    + +   LA+      +FG
Sbjct: 121 TTTTHLIEFFLTKAQLSTALMGTLYTRWPGFEQTATHTTPFAVELQQQLAQAVNAGCEFG 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH      +       + V + +   HL   S +E+  +AKA +F      G  
Sbjct: 181 VMEV-SSHALAQGRVLGCP-FEVGVFSNLTQDHLDYHSDMEDYFAAKALLFSPDYLKGRA 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD++ + L        + +        +AD  +             +      +  
Sbjct: 239 IINADDTYGQRLIKALSPEKVWSY--SVNDSSADLWMSDLSYEPNGVTGTIHTPEGDVSF 296

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G +  +N+L ++G V  L  D+     A+  F    GR +R +   +Q    ++D
Sbjct: 297 RSPLVGQYNLENLLASVGAVLHLGLDLQLIANAIPEFPGVPGRMERVQINPDQDISVIVD 356

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++  +        ++L    P   GR I V G     G             ++      
Sbjct: 357 YAHTPDSLE-----NLLKAARPFIPGRMICVFG----CGGDRDRTKRPKMGKIAAELADL 407

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +++  +            +   +P ++                     GD V++  K 
Sbjct: 408 AFVTSDNPRTEDPEKILDDILAGIPDTVQPTVIGDRAIAIRTAILQAQPGDGVLLAGKG 466


>gi|170738610|ref|YP_001767265.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
 gi|168192884|gb|ACA14831.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium sp.
           4-46]
          Length = 488

 Score = 83.8 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 142/457 (31%), Gaps = 32/457 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            + G      V  ++ DSR + P   F A+ G   DG  F   A   GA  +V      A
Sbjct: 13  EAAGAASALPVAALTADSRRVGPGAVFVAVPGTRADGRLFAAQAAAAGAVAMVAEGPRPA 72

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
            +    +    V D   AL   A        AT++A+TG+ GK++  + +   L+ + + 
Sbjct: 73  DLPQA-VAYLSVPDARRALALAAARLHPGQPATVVAVTGTSGKSSVADFVRQILARLGRR 131

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLV 182
            A +G+     G       +       + E              +  S  G  +     V
Sbjct: 132 SASLGTLGVVTGEGAAYGALTTPDPVTLHETLDRLARDGITDLAMEASSHGIEQRRLDGV 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R   A  T +   HL     +E   +AK  +FE L   G   +   D         +   
Sbjct: 192 RLTAAAFTNLGHDHLDYHRTVEAYLAAKLRLFEDLLPEGATAIVNADGPMADRAVAAIRA 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
               + + G++           +   Q              +     Y +   ++    +
Sbjct: 252 RSLPLVTTGRAGETLRLDAVETRGFAQRLTLAAQGRALTVDLPLVGSYQVENALVAAALV 311

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           ++             ++ H     G+  R A ++G   ++D ++     +      VL  
Sbjct: 312 LATPAGRGRLEAVIGALGHLAGVPGRLERVATHRGALCVVDYAHKPEALAG-----VLQA 366

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKD 416
           + P   GR + V+G     G         +   +++     V ++  +           +
Sbjct: 367 LRPFATGRLVCVMG----CGGDRDRAKRPMMGRIAVAGADRVIVTDDNPRSEEPAAIRAE 422

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            L  +                   L  GDV+VV  K 
Sbjct: 423 ILAAAPGAEEIGDRAEAIRAAVRDLAPGDVLVVAGKG 459


>gi|326803791|ref|YP_004321609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651729|gb|AEA01912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 504

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 70/488 (14%), Positives = 139/488 (28%), Gaps = 60/488 (12%)

Query: 6   TFHDLLQAIQ--GHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           T  ++ + +   G         Q  V  +S +S++++    FF  KG H+    ++  A 
Sbjct: 4   TLREICRLLDERGQLKSPLLTSQASVQNLSYNSKAVSEGTLFFC-KGAHFKP-AYLEQAQ 61

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-------------- 107
             GA   V   D       L + +  V+D+  A+  +A                      
Sbjct: 62  ALGAIAYVSEQDY-----GLDLYLIQVEDIRLAMPIIADFFYQAPYQAFHLTGITGTKGK 116

Query: 108 -------ATIIAITG-SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                    I+ +   S+GK  T  + + +            +    + +      +   
Sbjct: 117 TTTTFYLTKILDLYQESLGKEPTAYLSSSSYYDGVDQGESHLTTPESLELFYRFNHVRES 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGL 217
               +  + +S           V   +     I+  H+S       E+   +K ++F+  
Sbjct: 177 AIDFMT-MEVSSQALKYHRVAEVPFEVGAFLNISTDHISPSEHPNFEDYFMSKLKLFDQS 235

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +                  + S  +      S  K + AD+  +     S+Q    +   
Sbjct: 236 QLAVINLDADHIDRIYQRASDSKTVKKIVTVST-KDEKADYLAKNIVSGSDQQHFVLHAP 294

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
               E+    +G    +N L+ + I        +   KAL           R     +  
Sbjct: 295 DFEGEIRMKMLGRFNVENALVAIAIARYYQVPYEIIKKALQAAQ----TEGRMEVYHSTD 350

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                   +  N  S++       Q+ P      I V G     G+ + S   DL EV +
Sbjct: 351 KRIHAIVDFAHNKLSLEKLFEASRQMYPKA--HSIVVFGSA---GDKAISRRKDLGEVAA 405

Query: 398 LYNISHVWLSG----FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGD--- 445
            Y    +          V  +   + + I                  +        D   
Sbjct: 406 QYADEIILTMDDPGTESVEKICQEINQPIQAAQRQAKIIPNRPQAIDYAFQQASAYDGEV 465

Query: 446 VVVV--KS 451
           VV++  K 
Sbjct: 466 VVLIAGKG 473


>gi|194337862|ref|YP_002019656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|226722941|sp|B4SHE6|MURD_PELPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|194310339|gb|ACF45039.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 464

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 114/382 (29%), Gaps = 31/382 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       KA I+ ITG+ GKTTT  ++                   +IGVP +   +
Sbjct: 97  ELASRF---CKARIVGITGTDGKTTTSTLVHALCEEDGLRNGYRAYSVGNIGVPFSSMVL 153

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
            +   D  + EL    L      +  ++P +AVI  I P HL  +   ++  A+AK  I+
Sbjct: 154 DMKAGDIAVVELSSYQL----ERSPTLKPEVAVIMNITPDHLDRYAGELQGYAAAKFRIY 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                  T+  N DD+      A         I SFG                E   +  
Sbjct: 210 ANQGAGDTLIYNEDDALLREHFA-CRDQFPFNIMSFGMEPACKGVPDIRTFFLEGDTLVA 268

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                   V+        +      +  V    A          V        +      
Sbjct: 269 HTPDGDEPVLVTSDFLKKSFRGRHNISNVLAAVAVAGALGIQREVVCQVIREFRGVEHRQ 328

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                    +  N    S    ++ L Q         + + G     G    + +  +  
Sbjct: 329 EFVMTINGVDWVND---SKATNMNALRQALEALPATAVLIAG-----GRDKGNDYAAITR 380

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           ++    +S +   G     +  A    + V  + +++   L  + +   G  V+     +
Sbjct: 381 LV-EKKVSLLIALGESQDKIVSAFKDVVAVKAAGSLEDAVLLARDAASSGQTVLFSPGCA 439

Query: 452 S---------NSCGFYRLINLL 464
           S             F + ++ L
Sbjct: 440 SFDMFKNFEDRGMQFKQCVHQL 461


>gi|255994449|ref|ZP_05427584.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
 gi|255993162|gb|EEU03251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Eubacterium saphenum
           ATCC 49989]
          Length = 505

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 126/467 (26%), Gaps = 62/467 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           V+ I+ DS+ ++    F   KG  +    ++  A++KGA   V           ++IP  
Sbjct: 26  VSNIAYDSKKVSNGTLFVC-KGAAFK-KQYLEEAIEKGACCYVSE-----DCYDVNIPQI 78

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT----------------IAL 130
            V D+  A+  +A          +  I  +  K  T                       +
Sbjct: 79  RVGDIRKAMAVIAGRFYDHPDRKLTLIGITGTKGKTTTAYYIKAILDTFLLNSGKKPAGI 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTL-------ARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            S    Y       + +  P T              +++ + E+  S        T+ + 
Sbjct: 139 LSGIFNYYGKDYEESSLTTPETFELFEKLSNAAENGLEYLVMEV--SSQALKYHRTYGLM 196

Query: 184 PHIAVITTIAPAH--LSNFSGIEEIASAKAEIFEGL-----EKTGTIFLNYDDSFFELLK 236
              A    +   H      S  E+  ++K  +F+        K    + ++ +   +  K
Sbjct: 197 FDFAGYLNLDEDHISPGEHSDFEDYKASKLLLFKACDVAVLNKDSEHYEDFLNECVDAKK 256

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S +             NA   + ++      +  +     +         G     N 
Sbjct: 257 VISFSSKGLDADYRACDINAKNGVLEFNIVYHDASRDTDEPVRKSNFTILSSGEFNIDNA 316

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L+   I S L    +   +AL                +      +    +  N  S    
Sbjct: 317 LLATSIGSELNVPYEDMKEALYNVKVPGRM-----EVVKSRGGRIAIVDFAHNKLSFIKL 371

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----V 411
              +     + + +   V G               L  +++  N   V+++         
Sbjct: 372 FEAVK--KEYPDKKIAIVFGTPGGKAYDR----RALMGMIAAKNADKVYITEDDPYREKA 425

Query: 412 LAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +      +A+  S  +                     ++++  K 
Sbjct: 426 EDICEEIRAEAVKYSDDIVVVLNRQDAIKRAAEETDAEWIILIAGKG 472


>gi|225850179|ref|YP_002730413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
 gi|225646272|gb|ACO04458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Persephonella
           marina EX-H1]
          Length = 419

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 130/383 (33%), Gaps = 45/383 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++  + R     ++IA+TG+ GK+TT +++   +               + G P +   
Sbjct: 69  GEIEFSYR-FFDGSVIAVTGTDGKSTTSKLIHHIIGEE------KADIGGNYGTPFSDI- 120

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    D  + EL    +    + T + RP IAV     P HL     +     +K  +F 
Sbjct: 121 VSEGKDTVVLELSSFQI----YSTEMFRPDIAVFLNFYPDHLDWHKKLLHYRLSKYRLFR 176

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +++     LN+DD          +       Y F  S   D     +   SE       
Sbjct: 177 NMKEEDPAVLNFDDQVVR------NTPKKGKRYYFSLSPLPDNLEGAYYDGSEIVLKING 230

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + K      H  G H  QN++ ++    I   D +T  + L  F P   R        +
Sbjct: 231 FKFKFGLSDIHLKGIHNIQNIMASVVTAYIYGIDPETIEERLKSFKPLPHRM---EYVGS 287

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S      ++K A+            R I + G + + G+ S     +L   
Sbjct: 288 INGVDFYNDSKATTVQAVKKAVQSFD------GKRVILITGGINKGGDFSD-LRDELL-- 338

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
               ++  V++ G    ++   +   +     E+++            GDV+++    +S
Sbjct: 339 ---NSVKEVFIIGRDRKSIYSMIKDYVKAEIKESLEDAVNTAFKKAEKGDVILLSPGCAS 395

Query: 453 ---------NSCGFYRLINLLLE 466
                        F  ++  L +
Sbjct: 396 FDMFKNYQERGEIFKSIVRKLKD 418


>gi|306820503|ref|ZP_07454136.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551417|gb|EFM39375.1| UDP-N-acetylmuramyl pentapeptide synthase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 520

 Score = 83.8 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 144/354 (40%), Gaps = 24/354 (6%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            A  K++         T+I +TGS GKTT K++L   L           +YN  +GV +T
Sbjct: 167 EARQKISSM----QNLTVIGVTGSYGKTTVKQILGKLLGKDFNVLITPYNYNTTLGVTIT 222

Query: 153 LAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +   +    D  + E+G   +GEI+ +  +V P   VIT+I   HL  F  ++ I   K 
Sbjct: 223 IREYLSPLHDVFVCEMGAKGVGEIKEICDIVNPKYGVITSIGEQHLETFLSVDNIIKTKF 282

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+ + +   G +FLNYD+        ++  +    +      KNADF     K     S 
Sbjct: 283 ELADAVPDDGIVFLNYDNEII-----RNKKVDKNIVSYAVNYKNADFVPYDIKVDENGSI 337

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             + + G+ ++     IG H   N+   + +   L     T ++ +      E R    +
Sbjct: 338 FYLDIDGEKVKFETKIIGLHNVLNIAGCIAVAYKLGVTRQTLVQRVRQIEQVEHR----Q 393

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             + + F  +ID++YN+NP+  K+A+  LS          I +   M E+GE   S + +
Sbjct: 394 QVIKKNFGIIIDDAYNSNPSGAKSALDTLSMFDMLK----IVITPGMVELGEKQSSLNRE 449

Query: 392 LAEVLSLYNISHVWLSGF-HVLALKDALP----RSIHVHYSETMDGLFLFIQSS 440
               ++     +  L G  H + +++ +         +   + +          
Sbjct: 450 FGRQIAKV-ADYTILVGKNHTIPIQEGIRAENYDEEKLFVVDDIKEALDIAYKL 502


>gi|167946373|ref|ZP_02533447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 145

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 11/132 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DLL  +    I    +  ++ ++IDSR++ P   F A +G    G DF   A+ +GA
Sbjct: 12  SLQDLLAGL--AEIDAAQERPISCLAIDSRNLCPGGLFLACQGGDRHGLDFTEQALAQGA 69

Query: 66  GLVVVNTDMVASIG-------SLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
             +    +              L IP+  V+ +    + +A           T+I +TG+
Sbjct: 70  VAIAWEPNGPEVNRQAERLATQLPIPLIRVEGLTRLASLIAARFFAYPSRSMTVIGVTGT 129

Query: 117 VGKTTTKEMLTI 128
            GKT+   +L  
Sbjct: 130 NGKTSVSHLLAQ 141


>gi|238853708|ref|ZP_04644075.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300362910|ref|ZP_07059080.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
 gi|238833644|gb|EEQ25914.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus gasseri
           202-4]
 gi|300352960|gb|EFJ68838.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri JV-V03]
          Length = 523

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 69/471 (14%), Positives = 127/471 (26%), Gaps = 69/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSMAKDSGATCYVAEQPYPE---GKGMHALV 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I      + S  +
Sbjct: 90  VRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P    +            +  D+   +        + +S     +     +   + 
Sbjct: 150 DIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I P H+   +     A       + +  +    +N     F+ + A   A      
Sbjct: 210 FFLNITPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA--ATTTTNP 266

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------------IG 289
            S       DF+    KQ  +  +  V+   K  E                       IG
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIG 326

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +    +         K +                 ++   T+I +  +  
Sbjct: 327 DFNEMNGTAAIIGAGLAGESYAECAKGIRHVTIPGR----METLPSKNHGTVIVDYAHNK 382

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +   A+    Q   +     + V       G+   S     +E L+ Y       +  
Sbjct: 383 --ASMIALMSFMQREFNNPKIIVVV----GAPGDKGVSRRPGFSESLTAYANKAFLTTDD 436

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                 + +   +   I     +       +       +     D+V++  
Sbjct: 437 PGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICG 487


>gi|42519760|ref|NP_965690.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii NCC 533]
 gi|41584050|gb|AAS09656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactobacillus johnsonii NCC 533]
 gi|329668011|gb|AEB93959.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Lactobacillus johnsonii DPC 6026]
          Length = 523

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 69/471 (14%), Positives = 129/471 (27%), Gaps = 69/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSMAKDSGATCYVAEQPYPE---GKGMHALV 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I      + S  +
Sbjct: 90  VRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P    +            +  D+   +        + +S     +     +   + 
Sbjct: 150 DIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I P H+   +     A       + +  +    +N     F+ + A   A      
Sbjct: 210 FFLNITPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA--ATTTTNP 266

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------------IG 289
            S       DF+    KQ  +  +  V+   K  E                       IG
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +    +   + +   K +                 ++   T+I +  +  
Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTIPGR----MEALPSKNHGTVIVDYAHNK 382

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +   A+    Q   +     + V       G+   S     +E L+ Y       +  
Sbjct: 383 --ASMMALMSFMQREFNNPKIIVVV----GAPGDKGVSRRPGFSESLTAYADKAFLTTDD 436

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                 + +   +   I     +       +       +     D+V++  
Sbjct: 437 PGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487


>gi|116630287|ref|YP_815507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus gasseri ATCC 33323]
 gi|282852925|ref|ZP_06262266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
 gi|116095869|gb|ABJ61021.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus gasseri ATCC
           33323]
 gi|282556033|gb|EFB61654.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus gasseri 224-1]
          Length = 523

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 69/471 (14%), Positives = 127/471 (26%), Gaps = 69/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSMAKDSGATCYVAEQPYPE---GKGMHALV 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I      + S  +
Sbjct: 90  VRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P    +            +  D+   +        + +S     +     +   + 
Sbjct: 150 DIVGPKPEDKFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I P H+   +     A       + +  +    +N     F+ + A   A      
Sbjct: 210 FFLNITPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA--ATTTTNP 266

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------------IG 289
            S       DF+    KQ  +  +  V+   K  E                       IG
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASEKAKKLPIAGDYTLQMIG 326

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +    +         K +                 ++   T+I +  +  
Sbjct: 327 DFNEMNGTAAIIGAGLAGESYAECAKGIRHVTIPGR----METLPSKNHGTVIVDYAHNK 382

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +   A+    Q   +     + V       G+   S     +E L+ Y       +  
Sbjct: 383 --ASMIALMSFMQREFNNPKIIVVV----GAPGDKGVSRRPGFSESLTAYANKAFLTTDD 436

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                 + +   +   I     +       +       +     D+V++  
Sbjct: 437 PGFEDPMDIAQEIDAGIDHEKVDVTIELDREKAIHDAIAMSNKDDIVLICG 487


>gi|295094720|emb|CBK83811.1| UDP-N-acetylmuramyl pentapeptide synthase [Coprococcus sp.
          ART55/1]
          Length = 87

 Score = 83.4 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              D+L+      +       +  ++ DSR +     F   +G   DGH +I  AV +G
Sbjct: 1  MRASDVLKGTVYEILAGDIDCQITDLADDSRDVTQGTLFVCRRGARTDGHRYIDDAVARG 60

Query: 65 AGLVVVNTDM 74
          A  +VV  D+
Sbjct: 61 AACIVVTDDI 70


>gi|149181751|ref|ZP_01860243.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148850599|gb|EDL64757.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 165

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           +     LL  +  +S        +  +    + +   + FF IKG   D H     AV  
Sbjct: 1   MMKLQTLLGVLPFYSTRGKGNPDIANLKNHHKKVQNGDLFFCIKGSEVDSHTLAKEAVLS 60

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GA  VV   ++      L +PV  V D   A+  LA     + 
Sbjct: 61  GAAAVVSEREL-----ELDVPVIIVKDSRRAMAVLADYFYKQP 98


>gi|325962944|ref|YP_004240850.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469031|gb|ADX72716.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter phenanthrenivorans Sphe3]
          Length = 550

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 81/486 (16%), Positives = 148/486 (30%), Gaps = 49/486 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              + +AI     G      V GIS++SR++   + + A+ G    G DF   A++ GA 
Sbjct: 37  LDSIGEAIGVVVPGASADVAVTGISLNSRTVERGDLYVALPGAVRHGADFAAQAIEAGAA 96

Query: 67  LVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKL-AVAARLRS----KATIIAITGSVG 118
            ++ +       A     ++PV  V      +  L A+  R  S       +  +TG+ G
Sbjct: 97  AILTDDAGARLLALSSDTAVPVLVVGAPRNVVGPLSAMIYRSNSTEGTPLQMFGVTGTNG 156

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIG---VP-----------LTLARMPVDVDFGI 164
           KTTT   +T  L S+ K    IG+     G   VP             L  +  +     
Sbjct: 157 KTTTTYFITSLLRSLGKKTGLIGTIEILAGGSPVPSLLTTPESPDVHGLLALMRENGLTA 216

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S           V   +A  T +   HL     +E+  + KAE+F    +     
Sbjct: 217 AAMEVSSHAISYQRVDGVTFDVAGFTNLTQDHLDLHHTMEDYFATKAELFT-PARARKAV 275

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD +   L     A       S       D+ + +       +   ++  G +   V
Sbjct: 276 VTVDDEWGRRLAGA--AAVPVITLSTSAQHPGDWTVTETAARGLGTEFTLRGPGGTRLRV 333

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
           H G+             ++ +        ++A              R  L       + +
Sbjct: 334 HTGLPGTFNVANAALAAVMVLAGGVDAATLQAALDAEDPFTVAVPGRMQLVSEQPAAVVD 393

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +   A    A ++ +  SP    R I V G   +               ++      V
Sbjct: 394 FAHNTDA---LARALEAVRSPEPGSRLIVVFGATGQ----RDQGKRPAMGAIAARLADTV 446

Query: 405 WLS-----GFHVLAL-KDALPRSIHVHYSET----------MDGLFLFIQSSLVDGDVVV 448
            ++          A+  D L  +      ++           D             D ++
Sbjct: 447 IVTDDDPHDEDAAAIRADVLAGAREAKARDSLPCILEEVFPRDKAIQRAVELARPEDTIL 506

Query: 449 VKSSNS 454
           V     
Sbjct: 507 VAG-RG 511


>gi|170748780|ref|YP_001755040.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655302|gb|ACB24357.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 485

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 146/457 (31%), Gaps = 32/457 (7%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
            + G      V+ ++ DSR +A    F A+ G   DG  F   A Q+     V       
Sbjct: 11  EAAGPAADLTVSDLTADSRQVATGTVFVAVPGTKADGRRFAAQAAQR-GAAAVAGEGTRP 69

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
           +    ++    V D   AL   A         T++A+TG+ GK++  + +   L+ + + 
Sbjct: 70  ADLPDAVAWIPVADARRALALAAARLAGPQPETVVAVTGTAGKSSVADFVRQILARLGRD 129

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLV 182
            A +G+     G       +       +                +  S  G  +     V
Sbjct: 130 AASLGTVGIVTGRGAQYGSLTTPDPVTLHRTLARLAAEGVTDLAMEASSHGIEQRRLDGV 189

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R   A  T +   HL   + IEE  +AK  +F  L   G   +   D  +      +   
Sbjct: 190 RLDAAGFTNLGRDHLDYHASIEEYLAAKLRLFTDLLPPGRPAIVNADGAYAERVIAAAEA 249

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + + G+    D ++   +         V   G++ ++    +G    +N L+  G+
Sbjct: 250 AGRPVRTVGR-GGRDLRVEAVRTEGFAQAARVLFAGRARDLRLPLVGEFQVENALVAAGL 308

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                A         +      G   R            + +  +   A      SVL+ 
Sbjct: 309 ALATPAGAADPDGVFAALDHLTGVPGRMERIGEARGGLCLVDYAHKPEA----LESVLTA 364

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           + P   GR +AV G     G         L   ++      V ++          A++ A
Sbjct: 365 LRPFATGRLVAVFG----CGGDRDRGKRPLMGAIAQRLADVVIVTDDNPRTEDAAAIRRA 420

Query: 418 LPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +                  S L  GDV+VV  K 
Sbjct: 421 ILDAAPGAEEIGDRSEAIHSAVSRLGPGDVLVVAGKG 457


>gi|167838007|ref|ZP_02464866.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Burkholderia thailandensis MSMB43]
          Length = 164

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+ID++YNANP SM+AAI VL+  S      R+ V+G+M E+G+   +FH ++       
Sbjct: 32  TMIDDTYNANPDSMRAAIDVLAAQSA----PRVLVIGEMGEVGDEGPAFHREIGAYARER 87

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            I  ++  G   L   +A   +   H+ +    +   + ++      ++VK S      R
Sbjct: 88  GIDALFALGAATLPACEAYGAAAR-HFDDAAALVAALVAANFGARATLLVKGSRFMKMER 146

Query: 460 LINLLLEE 467
           +++ L  E
Sbjct: 147 VVDALANE 154


>gi|295426127|ref|ZP_06818794.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
 gi|295064163|gb|EFG55104.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus amylolyticus DSM 11664]
          Length = 551

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 62/473 (13%), Positives = 129/473 (27%), Gaps = 63/473 (13%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLS 82
             +  +S DSR I     FF  KG    G    ++  A   GA   V             
Sbjct: 57  TKIEYVSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKG 109

Query: 83  IPVFGVDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +    V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L  +      +
Sbjct: 110 MHALIVRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQMNGGRTAL 169

Query: 141 GSYNNHIG------------VPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLV 182
            S  N I                    +  D+   +        + +S     +     +
Sbjct: 170 ISSVNDIVGRRPEDSFKSSLTTPESLDLFRDMRRAVDNGMTHLVMEVSSQAYKKNRVFGL 229

Query: 183 RPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL------ 234
              +     I P H+         +    K ++     K      +              
Sbjct: 230 TYDLGFFLNITPDHIGPNEHPNFADYLHCKLQLMVNSRKCIINAESDHFDEIYAAATTTT 289

Query: 235 -------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                    +++       +    +  + +  +R+ +        + +    + E     
Sbjct: 290 NPDSIYLFASENFENPKLNVPIDFRYASQETDMRETRFKLFCVSDKAKQLPINGEYTLQM 349

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG     N    +    +     D   K +         G+            ++D ++N
Sbjct: 350 IGDFNESNATAAIIGAGLAGMSHDACAKGIRH---VTIPGRMQTEMTKDHGMVIVDYAHN 406

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                    ++++S +       +I V+  +   G+   S     +E L+ Y       +
Sbjct: 407 KAS-----MMALMSFVKREFNNPKIIVV--VGAPGDKGVSRRPGFSESLTAYADKAFLTT 459

Query: 408 G----FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                    ++ + +   I     +               +     DVV++  
Sbjct: 460 DDPGFEDPKSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGKDDVVLICG 512


>gi|227894010|ref|ZP_04011815.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
 gi|227864211|gb|EEJ71632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus ultunensis DSM 16047]
          Length = 523

 Score = 83.4 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 64/465 (13%), Positives = 125/465 (26%), Gaps = 57/465 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           +S DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  VSYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGAICYVAEQPYPE---GKGMHALI 86

Query: 88  VDDVLGALNKL-AVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L A   R  +    ++A TG+ GKTT+   L   L         + S  N
Sbjct: 87  VRDVSKAMALLSAAFFRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQANGGKTALISSVN 146

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            +  P                 +  D+   +        + +S     +     +   + 
Sbjct: 147 DVVGPKPEDSFKSSLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+P H+   +     A       + +  +    +N + + F  + A   A      
Sbjct: 207 FFLNISPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAETAHFNEIYAA--ATTTTNP 263

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S       DF+    K   +  +   +L  K      +       +  +     + +L 
Sbjct: 264 DSIYLFAREDFENPDLKVPIDFRFASQELDMKETRFKLYCASDKARKLDINGDYTLKMLG 323

Query: 308 ADVDTA------------IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
              ++             +                R    +     +     A+  +   
Sbjct: 324 DFNESNGTAAIIGAGLAGLNHDQCAKGIRDVTIPGRMQTERTKSHGMVVVDYAHNKASMM 383

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHV 411
           A+    Q   +     + V       G+   S     +E L+ Y       +        
Sbjct: 384 ALMSFMQNEFNDPKIIVVV----GAPGDKGISRRPGFSESLTAYADKAFLTTDDPGFEDP 439

Query: 412 LALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
            ++ + +   I     +               +     DVV++  
Sbjct: 440 KSIAEEIDSGIDHSKCDVTIELDRKKAIHDAIAMAGPKDVVLICG 484


>gi|302533956|ref|ZP_07286298.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
 gi|302442851|gb|EFL14667.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. C]
          Length = 564

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 19/218 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L   +    +       + GI+ DSR++ P + + A+ G    G DF   A   GA 
Sbjct: 66  LGELATLLG---LPESGAAQITGITHDSRAVRPGDLYAALPGARLHGADFAAQAAALGAA 122

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            V+ + +      +  +PV  V D    + +LA     R       + ITG+ GKTTT  
Sbjct: 123 AVLTDPEGAERAAATGLPVLAVADPRARMGELAAEIYGRPGEALLQLGITGTSGKTTTAY 182

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLV 182
           ++   L +  +T   +G+    IG     +    P   D       M   G       + 
Sbjct: 183 LVEGGLRAAGRTTGLVGTVEMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVS 242

Query: 183 R------------PHIAVITTIAPAHLSNFSGIEEIAS 208
                          +AV   ++P H+   +G+E+   
Sbjct: 243 SHALVLGRVDGCVFDVAVFNNLSPEHMEFHTGMEDYFQ 280


>gi|304440571|ref|ZP_07400457.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304370947|gb|EFM24567.1| UDP-N-acetylmuramyl pentapeptide synthase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 510

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 79/351 (22%), Positives = 138/351 (39%), Gaps = 14/351 (3%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFG 163
            S   +I ITGS GKT+ K   +  L    +      SYN  +G+   +   +    +  
Sbjct: 158 ESGLKVIGITGSFGKTSVKFFTSTMLDEKFRVQNTPSSYNTPMGLSKVINNELDSSREIF 217

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + ELG    GEI  +  LV+P I VIT I P H+  +  IE I   K E+ E L++ GT 
Sbjct: 218 LAELGAYKPGEIHEVASLVQPDIGVITAIGPTHMQMYKTIENIMKTKYELIEDLDENGTA 277

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             NYD+ +   L  K+         +    K   +           ++  V  +  S+E 
Sbjct: 278 IFNYDNKYVRELADKTTK-KTIRYGTKDFMKLDYYAKDIEVSERGSTFTLVSKEKGSIEC 336

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  QN+L ++ I   L   ++     +      E R              +ID
Sbjct: 337 TTKLLGEHSVQNLLASVAIGMELGMSLEEVKDRIEKIESVEHRLNLIEGQGGV---IVID 393

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +++N+NP       + L  +S   +G++I V   M E+GE+ +  +  + + ++     +
Sbjct: 394 DAFNSNPVGF---RAALKVLSQFKDGKKIIVTPGMVELGEMEEEENYKVGKEIAKV-CDY 449

Query: 404 VWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L G          L D+      +    +++     +       DVV+ 
Sbjct: 450 AILVGIKRTEPIRRGLLDSKFDEGRIISVRSLNDATSELGKITAPRDVVLF 500


>gi|307731077|ref|YP_003908301.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
 gi|307585612|gb|ADN59010.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia sp.
           CCGE1003]
          Length = 519

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 78/484 (16%), Positives = 147/484 (30%), Gaps = 53/484 (10%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             D L  ++              +  D+RS+   +AFFA      D   FI  A+++GA 
Sbjct: 14  IADALDWLRARVQPGA------HLHADTRSLGAGDAFFAYAVEGADNRPFIDAALERGAA 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
            V+V  +  +     S  +  V  +      +A A           + +TG+ GKT+  +
Sbjct: 68  AVLVQPEGFSGALDAS-SMLAVPRLNELAGSIASAWYGDPSDHMLTVGVTGTNGKTSCSQ 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFELG 168
            ++ AL+++    A IG+     G+P  L                             + 
Sbjct: 127 WISAALTALGTRCAIIGTLGT--GLPGHLVHTGFTTPDAPQLQRSLAQLRDAGAKAVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +   +     IAV T +   HL      E   +AKA +F   E    +    D
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFEAYEAAKARLFAWPELRAAVINRDD 244

Query: 229 DSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                LL + + HA  I      G++  +    +        +                 
Sbjct: 245 AVGRRLLASTRGHARTIAYGLDAGQADPSQAAQQADAFLLAANVRATATGTAFHLSTSDW 304

Query: 288 IGYHMAQNMLMTLGIV---------SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    L    +                 D A+  L+      GR +R    L    
Sbjct: 305 GEADVEVQTLGAFNVSNLLGVLGALLAANVPFDAALAELAKLESVNGRMQRLGGRLQNDE 364

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + Y   P +++  +  L  ++    G  I + G     G    +    L   ++ 
Sbjct: 365 PLVVID-YAHTPDALEKTLEALRPMAAARGGELICMFG----CGGDRDATKRPLMGAIAE 419

Query: 399 YNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +  +         +   +  +      E      L    S    DV+V+
Sbjct: 420 KLADGVVVTSDNPRSEDPQSIIGQIAAGMKDASKARRIEDRASAILQAIRSAAREDVIVL 479

Query: 450 --KS 451
             K 
Sbjct: 480 AGKG 483


>gi|330895234|gb|EGH27572.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 128

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
            P + F A+ G + DG   I  A+++GA  V    +    +    +P+  V  +   L+ 
Sbjct: 2   RPGDLFLAVPGINVDGRAHIADALKRGAAAVAYEVEGSIVLPITDVPLIPVKGLAAQLSA 61

Query: 98  LAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           +A            ++ +TG+ GKT+  +++  AL ++ +  
Sbjct: 62  IAGRFYGDSSRSLNLVGVTGTNGKTSVTQLVAQALDALGQRC 103


>gi|221194981|ref|ZP_03568037.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
 gi|221184884|gb|EEE17275.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium rimae ATCC
           49626]
          Length = 519

 Score = 83.0 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 68/449 (15%), Positives = 122/449 (27%), Gaps = 47/449 (10%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS--IPVF 86
           GI  DSR I P   F   KG  +   +F+  A++ GA   +      A + +++  +P  
Sbjct: 34  GIDHDSRIIEPGHVFVC-KGAAFKP-EFLKSALEAGAVAYLCAESHAAELEAIAPTVPAL 91

Query: 87  GV--DDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIA------LSSIKKT 136
               +++  A+ + +           T+I ITG+ GK+TT  ML                
Sbjct: 92  IATDENLRRAMAESSAYVTGHPDHGLTMIGITGTKGKSTTACMLRAILDGDEPYEKTAIM 151

Query: 137 YACIGSYNNHIGVP----------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
            +         G P                          + +S        T+ +   I
Sbjct: 152 GSIEVFDGIEHGKPDNTTPEAPELWRHLANAQKCGLTYMAMEVSSQALKYDRTYGLHLDI 211

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS----FFELLKAKSH 240
           AV   I   H+S    S  E+   +K +IF+  +                    +  ++ 
Sbjct: 212 AVFLNIGRDHISPVEHSTFEDYFVSKMKIFDMAKTAVINRNTEHYEDVMAHVRAVHERNP 271

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                       +  AD                      +  +     G     N L  +
Sbjct: 272 ECCQHVYTFSATNPKADIWADDISSEYGLVSFRAHTPTWTGHLSIPMPGLFNVDNALAAI 331

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + ++L    +     L           R      +         Y  N  + +   S  
Sbjct: 332 TVANLLGFSGEK----LQYPLLNTHVSGRMELIPTKDRKVTALVDYAHNRLAYQKLFSSS 387

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--------L 412
           SQ  P+       VLG    +G  +Q    DL E  S +    ++ +             
Sbjct: 388 SQEFPNYGR--YVVLGA---VGGKAQERRRDLPEEGSKWADHLIYTTEDPAFDDPAEICA 442

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            +  A P           +          
Sbjct: 443 EMAAATPEDASYEIILDREEAIRQAVRLA 471


>gi|297626715|ref|YP_003688478.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922480|emb|CBL57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 529

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/472 (12%), Positives = 123/472 (26%), Gaps = 45/472 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +       +            +  + +DSRS+ P   +  + G    G +F   A   GA
Sbjct: 23  SLAGAADGLSVRLPAGADHLQIVDVYLDSRSVLPGSLYVGLPGTRTHGANFAAQAAALGA 82

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             ++ + +         +P+   +    A+  +A            +I ITG+ GKTT  
Sbjct: 83  VALLTDAEGAELAADAGLPIVVAEQPRVAMAHMAARVFGDPTRDLLMIGITGTNGKTTCA 142

Query: 124 EML-TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---------------- 166
            ++    +++  +            G PL  +R  +                        
Sbjct: 143 FLIEGALIAAGHRVGTIGTIGFRLEGEPLPSSRSTITTPESCDLQALFAVMREGGADAIV 202

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S           V   +A  T +   HL      E    AKA++      T    +N
Sbjct: 203 MEVSSHALALDRVEGVHFDVAAFTNLGRDHLDFHKTQEAYFEAKAKL-FRPTMTSRAVIN 261

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +  +L  ++ A G   + + G     D+++       E              +   
Sbjct: 262 GDDPWGRILVERADAAGAPHVVTTGFDPERDYRVLDSTPTIEGGEHIELA-TPGEAMAFD 320

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                          I  +  A V+       +         +            +D ++
Sbjct: 321 IALPGQYNVANAATTIAVLAQAGVNLDRAVPGLEKALVPGRMQRVDLGPDSPRVYVDFAH 380

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                        +        GR + VLG     G            V +  +   V +
Sbjct: 381 TP---------QAVESALSALPGRTLVVLGA----GGDRDEAKRGPMGVAAARHADVVVV 427

Query: 407 SGFHVL---------ALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           +  +            +     +       +                 GD V
Sbjct: 428 TDDNPRTEDPATIRAEVLAGARQVPDTEVIDGLDRRHAIGLALGMAHAGDAV 479


>gi|193213699|ref|YP_001999652.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
 gi|226711893|sp|B3QLW6|MURD_CHLP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193087176|gb|ACF12452.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobaculum
           parvum NCIB 8327]
          Length = 467

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 25/358 (6%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       +A II ITG+ GKTTT  ++     +  +          +IG P +    
Sbjct: 100 ELASWF---CRARIIGITGTDGKTTTATLIHRICEADGEQQGYRAFSVGNIGTPFSSEVS 156

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
            ++  D  + EL    L          RP+IAV+T I P H+  +   I   A AK  I 
Sbjct: 157 GMEPDDIAVLELSSYQL----EGCSSFRPNIAVLTNITPDHMDRYGGDIHAYARAKFRIH 212

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +   T+  N+DD               K + +  K+++ +     +   ++   +  
Sbjct: 213 ASQQAGDTLIYNHDDPLLRAHFEGDGPWPFKVVRTGLKAESFEGVSEDFVSVADGWIVIR 272

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR---GKRYR 331
                   +    +     +       ++S + A     ++  +V            R  
Sbjct: 273 TAGLTEQFMPVDEVMKPGFRGEHNLYNVLSSVAAARAAGVRDDAVRRSLSEFGGVEHRQE 332

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +      I++S   N  +M+ A+  +           + + G     G    + +  
Sbjct: 333 FVGSFCGVDWINDSKATNVNAMRQALQTV-------PAGMVLIAG-----GRDKGNDYAS 380

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +AE++    +S +   G     + +A    + V  + ++       + S   G  V+ 
Sbjct: 381 IAELVKE-KVSCIVAIGESRGKIAEAFRGVVPVFEAASLHEAVELARQSARPGGSVLF 437


>gi|268320124|ref|YP_003293780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
 gi|262398499|emb|CAX67513.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii FI9785]
          Length = 523

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 69/471 (14%), Positives = 129/471 (27%), Gaps = 69/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 37  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSMAKDSGATCYVAEQPYPE---GKGMHALV 89

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I      + S  +
Sbjct: 90  VRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVD 149

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P    +            +  D+   +        + +S     +     +   + 
Sbjct: 150 DIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 209

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I P H+   +     A       + +  +    +N     F+ + A   A      
Sbjct: 210 FFLNITPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA--ATTTTNP 266

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------------IG 289
            S       DF+    KQ  +  +  V+   K  E                       IG
Sbjct: 267 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 326

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +    +   + +   K +                 ++   T+I +  +  
Sbjct: 327 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTIPGR----MEALPSKNHGTVIVDYAHNK 382

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +   A+    Q   +     + V       G+   S     +E L+ Y       +  
Sbjct: 383 --ASMMALMSFMQREFNNPKIIVVV----GAPGDKGVSRRPGFSESLTAYADKAFLTTDD 436

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                 + +   +   I     +       +       +     D+V++  
Sbjct: 437 PGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 487


>gi|87125588|ref|ZP_01081433.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
 gi|86166888|gb|EAQ68150.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp.
           RS9917]
          Length = 503

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 79/492 (16%), Positives = 140/492 (28%), Gaps = 68/492 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           T H LL+A+       +    +  I+ DSR ++    F  + G   DG  F         
Sbjct: 4   TLHSLLRAVGLPWPDQLANVPIESITCDSRCVSRGSLFLGLPGVRVDGGSFWP------- 56

Query: 66  GLVVVNT--------------DMVASIGSLSIPVFGVDDVL-GALNKLAVAA--RLRSKA 108
                                           PV  V + +   + +LA A   R  S+ 
Sbjct: 57  ------RALADGAAAAVIGPAAAAVQPPGPEDPVLVVPEPVAQWIGELAAAFWQRPSSRM 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKT--------YACIGSYNNHIGVPLTLARMPVDV 160
           T+I +TG+ GKTTT  ++    +   +             G             R+   +
Sbjct: 111 TLIGVTGTNGKTTTTHLIEHLAAQAGRPAALFGTLVNRWPGHSITATHTTAFADRLQAQL 170

Query: 161 DFG------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                    +  + +S     +      R   AV T ++  HL     ++    AKA +F
Sbjct: 171 AEAVAGGTQVAAMEVSSHALEQQRVAGCRFAGAVFTNLSQDHLDYHPSMQAYFEAKALLF 230

Query: 215 EGL---EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                        +  DD +   L  +          S    + A+  +      S    
Sbjct: 231 AEPLLASDGVRAVVTMDDPWGRQLAERLGDR--CWRCSLEPDQEAELTMTDLVMRSSGVE 288

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +             +G     N++  + ++      +   +K L  F    GR +R  
Sbjct: 289 GRLITPKGEGRFASPLVGRFNLMNLMQAVAVLQQQGLPLPLLLKGLGSFRGVPGRMERVV 348

Query: 332 CALNQGFFT-LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            A         +   Y   P  +K A+       P  EGR I V G     G        
Sbjct: 349 VASAAAAQLPAVLVDYAHTPDGLKNALEAC---RPFVEGRLICVFG----CGGDRDRGKR 401

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                ++      V ++  +            + + LP S                 +  
Sbjct: 402 PQMASIAAKLADRVVVTSDNPRTEDPQQILADVVEGLPSSTDCVVEGDRAAAIAAAVAEA 461

Query: 442 VDGDVVVV--KS 451
             GD+V++  K 
Sbjct: 462 KPGDLVLIAGKG 473


>gi|313680446|ref|YP_004058185.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
 gi|313153161|gb|ADR37012.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Oceanithermus profundus DSM 14977]
          Length = 477

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 82/484 (16%), Positives = 133/484 (27%), Gaps = 71/484 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L            P   V G++ DSR + P   + A+ G  +DGH F+  A    
Sbjct: 1   MTLRELFAPFG----LAAPDVEVRGVTHDSRRVEPGFVYVALPGRRFDGHAFVADA---- 52

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDV--LGALNKLAVAARLRSKATII----------- 111
                      A   S  +P   + +     AL +LA     R    +            
Sbjct: 53  -VARGAVAVAGARALSPGVPYLRLPETELRPALARLAAEFHGRPSEKLWVAGVTGTDGKT 111

Query: 112 -------AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                   +  S G+ T   M+           A    +      P     +   V+ G+
Sbjct: 112 TTTFLLHHLLASSGRRT--GMIGTVGYDAGAGLAFPEGHFTTPEAPEVQGLLARMVEGGL 169

Query: 165 FE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L  S     +     V   +AV T ++P HL     +E    AKA +    E+   
Sbjct: 170 THAVLEASSHALAQHRLDAVDFDLAVWTHLSPEHLDFHGDMEGYFRAKALLV---ERARL 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN    +   L  + H                +F+L +  + +              E
Sbjct: 227 AVLNTACPYAMRLVHRPH---------LSYGPGGEFELLEVHEEAAGLAFAFASPEGRFE 277

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G + A+N L  L          + A   L  F    GR    +    + F  ++
Sbjct: 278 TRLPMLGRYNAENALAALAAAYTAGVSPERAAAELPRFAGVPGR---MQIVRTEPFRVVV 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++     +       LS + P  EGR + V+G     GE        L          
Sbjct: 335 DFAHTPKGLAA-----TLSALRPTTEGRLVVVVGSA---GERDPGKRAPLGRTAVELADL 386

Query: 403 HVWL--------SGFHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+             +  L                                   D VV+
Sbjct: 387 AVFTEEDSRSEPVEEILAELARGAEEASGREGKDYLLEPDRGRAIALAFELARPDDTVVL 446

Query: 450 --KS 451
             K 
Sbjct: 447 AGKG 450


>gi|256425925|ref|YP_003126578.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
 gi|256040833|gb|ACU64377.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chitinophaga
           pinensis DSM 2588]
          Length = 446

 Score = 83.0 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 58/406 (14%), Positives = 121/406 (29%), Gaps = 51/406 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +++  + +  +PV          +++  A R    + +IAITGS GK+TT  +      +
Sbjct: 78  ELMKKVRAQQVPVI---------SEIEFAYRYSKDSKVIAITGSNGKSTTTALTFNIFET 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                A +     +IG+           D+ I E+    L          +P++A++  I
Sbjct: 129 AGLHAAMV----GNIGLSYARQIATAPADYYIVEVSSFQLD----DIRDFKPNVAILLNI 180

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +   +    ++K  I              DD        +         ++  
Sbjct: 181 TPDHLDRYDYKMANYVASKFRIAMNQGPEDYFVYCIDDPEITNYLKEHTIYSTTIPFTIM 240

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +       +   +   +       +  + M V  + +      N+  ++           
Sbjct: 241 EPLKQGGFMANEQVNIQ-------VNDEPMIVSMYDLALKGKHNLYNSMAAGIAGRTMDI 293

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              K        +    R            I++S   N  S+  A+  +           
Sbjct: 294 RKEKIRESLTSFKSLEHRMEYVATVRGVDFINDSKATNVNSLWFALESMEH-------PV 346

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETM 430
           + V+G + +  + S          L    +  +   G     ++DAL     V   + +M
Sbjct: 347 VLVMGGVDKGNDYSA------IRDLVKEKVKAIICLGVDNAPIQDALSGYTPVMIDTRSM 400

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                        GDVV++    +S             F   +  L
Sbjct: 401 KDAVNAAFQYAAKGDVVLLSPACASFDLFKNYEDRGRQFKEAVKEL 446


>gi|225867965|ref|YP_002743913.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
 gi|225701241|emb|CAW98198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. zooepidemicus]
          Length = 481

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 132/436 (30%), Gaps = 60/436 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A++  A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTTAAYFAYHMLKESHKPALLSTMNT 147

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G     +++                   +   + E+  S    +    + +   + V
Sbjct: 148 TLDGKSFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEV--SSQAYLVGRVYGLIFDVGV 205

Query: 189 ITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E              +      A         
Sbjct: 206 FLNISPDHIGPIEHPSFEDYFYHKRLLMENSRAVVVNSGMEHFNILAEQVA--------- 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                K  +   +    +    Q++        + +     IG    +N +        L
Sbjct: 257 ----DKPHDFYGKGACNRLLQRQAFSFQAAGKLAGDYAIQLIGSFNQENAMAAGLACLRL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A +    + ++                     T   +       +  +   +LS +  H
Sbjct: 313 GASLKDIRQGIAKTRVPGRM--------EVLTMTNQAKVVVDYAHNGDSLEKLLSVVEEH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
            +G+   +LG     GE  ++   D  +V++ +   H+ L+           + + +   
Sbjct: 365 QKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVHIILTADDPNFEDPQLISEEIASY 421

Query: 422 IH--VHYSETMDGLFL 435
           IH  V           
Sbjct: 422 IHREVDIIIDRKEAIK 437


>gi|322517405|ref|ZP_08070279.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
 gi|322124003|gb|EFX95559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus vestibularis ATCC 49124]
          Length = 481

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 73/457 (15%), Positives = 132/457 (28%), Gaps = 63/457 (13%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + +S DSR + P   FFA KG  +   +F+ +AVQ G    V   D       + IP
Sbjct: 33  VTFDHLSYDSRDVTPSSLFFA-KGAAFKP-EFLENAVQAGLSFYVAEKDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A++ +A A     + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AIIVSDIKQAMSLVAQAFYQYPQDKLKLLAFTGTKGKTTAAYFAFNILKQSHKPAMLSTM 145

Query: 143 YNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                G     + +                   +   I E+  S    +    + +   +
Sbjct: 146 NTTLDGKNFFKSTLTTPESLDLFRMMAEAVANGMTHLIMEV--SSQAYLTKRVYGLTFDV 203

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + E               F     A       
Sbjct: 204 GVFLNISPDHIGPIEHPTFEDYFYHKRLLLENSRAVIVNSGMNHFGFVAEEVA------- 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K  +   +  +        +        + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLSCL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   + ++            +    + F        + +         +L  ++
Sbjct: 311 RLGASLEDIKQGIAQTSVPGRMEILTQANGAKVFVDYAHNGDSLD--------KLLQVVT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSG----FHVLALKDALP 419
            H +G+   +LG     GE  +    D   VL+ Y  +     +        LA+   + 
Sbjct: 363 DHQKGKISLILGAPGNKGESRRK---DFGHVLNTYPEVDVTLSADDPNKEDPLAICQEIA 419

Query: 420 RSI--HVHYSETMDGLFLFI-QSSLVDGDVVVV--KS 451
             I   V      +         +    D VV+  K 
Sbjct: 420 SHISRKVRIIVDREEAIKTAMAETTDSEDAVVIAGKG 456


>gi|307294501|ref|ZP_07574343.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
 gi|306878975|gb|EFN10193.1| UDP-N-acetylmuramyl-tripeptide synthetase [Sphingobium
           chlorophenolicum L-1]
          Length = 480

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/424 (18%), Positives = 138/424 (32%), Gaps = 30/424 (7%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
                L++        G      V+G +ID+R +AP   F A +G   +G DFI  AV  
Sbjct: 1   MRLGSLIEEQDAKLGAGASLDVPVSGFAIDNRKVAPGTVFGAFQGARMNGEDFIPAAV-- 58

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
                 V                  D+      +LA           +A+TG+ GKT+T 
Sbjct: 59  --QAGAVAVVARPEARVEGAIHIAHDNPRRLFAQLAARYFAPFPEMTVAVTGTNGKTSTV 116

Query: 124 EMLTIALSSIKKTYACI-------GSYNNHIGVPLTLARMPVDVDFGIFE-------LGM 169
           E+       +    A I              G+        +    G+            
Sbjct: 117 ELTRQLWRMLGHHSASIGTLGVTTSVDQVSTGLTTPDIVTFLSNMSGLKREGITHAAFEA 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S  G  ++ T  +    A  T ++  HL     ++    AK  +F+G+       + + D
Sbjct: 177 SSHGLAQYRTEGLPVSAAAFTNLSRDHLDYHGDMDSYFEAKMRLFDGVVAPDGAAVVWAD 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             +     +        + S G    A  +L           +EV+++GK  +V    IG
Sbjct: 237 DEWSDKVIRRATKRGLRVLSVGVQGQA-LRLANRTPTQLGQTLEVEVEGKPYKVSLPLIG 295

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            + A N L    +V     DV   ++ L    P  GR          G    +D ++  +
Sbjct: 296 AYQAANALTAAALVIAGGEDVGKVLELLGRVQPVRGR-LERAVITRAGAPVYVDYAHTPD 354

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   + +  + PH +GR I + G     G    +        ++     HV ++  
Sbjct: 355 G-----LRAAIEALRPHTKGRLITLFGA----GGDRDAGKRPQMGKVAADLADHVIVTDD 405

Query: 410 HVLA 413
           +  +
Sbjct: 406 NPRS 409


>gi|313891284|ref|ZP_07824902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120351|gb|EFR43472.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 479

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 62/445 (13%), Positives = 140/445 (31%), Gaps = 43/445 (9%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
              +S DSR +  Q  FF +KG ++   +++  A+++G    +   D       + IP  
Sbjct: 35  FAKLSYDSRDVDDQTLFF-VKGANFKA-EYLQSALEQGLPAYISEVDY-----EVDIPAI 87

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D+  A++ +A+A     +    ++A TG+ GKTT+       L    KT        
Sbjct: 88  IVNDIKHAMSIIAMAFYDNPQDNLKLLAFTGTKGKTTSAYFAYHILKQSHKTAMLSTMNT 147

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
              G     +++       +F++    +        +     A +          +    
Sbjct: 148 TLDGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEVSSQAYLVG------RVYGLTF 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           ++        + +                LL   S A+ I +   + K      + ++  
Sbjct: 202 DVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVIINSDMDYFKILKEQVKNQEHD 261

Query: 265 QCSEQSWMEVQLQGKSMEVVH------HGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
              + S   +         V       +        N    L           ++     
Sbjct: 262 FYGQASDNHILDSQAFTFKVTGKLAGSYKTLLIGRFNQDNALAAGLACLRLGASSDDIRK 321

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                   G+    +   G    +D ++N +         ++S +  H +G+ I ++G  
Sbjct: 322 GIAETTVPGRMEVLSHPCGAKVFVDYAHNGDSLE-----KLVSVVEEHQKGQIILIIGST 376

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSET 429
              GE  ++   D A+V++ +    V L+               +   + R + +     
Sbjct: 377 GNKGESRRA---DFAKVINNHPNLSVILTADDPNFEDPQTISEEIASYVSRQLTIEV--D 431

Query: 430 MDGLFLFIQSSL-VDGDVVVV--KS 451
            +            +GD +++  K 
Sbjct: 432 REQAIKLGLQLCQKEGDALIIAGKG 456


>gi|194467395|ref|ZP_03073382.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
 gi|194454431|gb|EDX43328.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus reuteri
           100-23]
          Length = 516

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/482 (13%), Positives = 140/482 (29%), Gaps = 65/482 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH---DFILHAVQKGAGLVVVNTDMV 75
           +  +       +S DSR +     FF        G+    ++  A +KGA   V   +  
Sbjct: 21  VSNLTDFTATSVSYDSRKVKSGTLFFCK------GNFLPKYLASAKEKGAIAYVAEKEYP 74

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
              G   +P   V+D   A++ L  A     ++   IIAITG+ GKTTT       L+  
Sbjct: 75  EGEG---LPAIIVNDEQKAMSLLGAAFYGYPQNDLFIIAITGTKGKTTTAYFADHILAQS 131

Query: 134 KKTYA-------------CIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEI 175
              +                  + + +  P         R  V+       + +S     
Sbjct: 132 TDNHIALFSTLDRILGNKPEDKFKSDLTTPESLDLFHDMRAAVNNGMTHLVMEVSSQAYK 191

Query: 176 RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           +   + ++  + +   I+P H+         +    K ++     K              
Sbjct: 192 KNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLINAETEKFIDVY 251

Query: 234 LLKAKS--------HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                +         A     I     ++         +   E  +    L  K+ ++  
Sbjct: 252 YTAKATTQPEDIFLFARRGANIKLPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQLNL 311

Query: 286 HGIGY---HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            G          N    +  +        +A  A+        RG+      N      +
Sbjct: 312 DGRYKTSVPGDYNEGNAVAAIIASGLAGASANDAVETLSHVHIRGRMEMINSNTHGTIYV 371

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++N       +   +L+ +       ++ V+  +   G+   S      + L+     
Sbjct: 372 DYAHN-----YASLKRLLAFLKRQTNADKVTVV--LGATGDKGISRRPGFGKALTEEQPD 424

Query: 403 HVWLS----G-FHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            V L+    G    + +   +       +  ++ +    +           + D+VV+  
Sbjct: 425 EVILTTDDPGFEDPMTIAREIDSYIDHDKVKNIQFEMDRETAIKKAIDGSGNDDIVVLAG 484

Query: 450 KS 451
           K 
Sbjct: 485 KG 486


>gi|60389983|sp|Q6FFC2|MURD_ACIAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 448

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 132/421 (31%), Gaps = 66/421 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ +G                  IPV G   VL          R  ++  I+AITGS
Sbjct: 82  IQQAIAQG------------------IPVIGDIQVL----------RRATQVPIVAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +         K      +   ++G P     +  + +  + EL    L    
Sbjct: 114 NAKSTVTTLFGQMAKDAGKRV----AVGGNLGRPGLDL-LKDEPELLVLELSSFQLETTS 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L       +AVI  ++  HL     +     AK  IF+G++K             +   
Sbjct: 169 HLNA----EVAVILNMSEDHLDRHGDMLGYHQAKHRIFQGVKKVVYNR--------DDSL 216

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +        + SFG +     Q    ++     W+             +  G H   N 
Sbjct: 217 TRPLVPDSTPMQSFGLNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANA 276

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +   V++ ++ L  F   E R                ++S   N  +  AA
Sbjct: 277 LACLALGEAIGLPVESMLETLKQFKGLEHRC---EYVKTVNDVRYYNDSKGTNVGATLAA 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L       +G+ I +LG   +  + S      L        +    L G     ++ 
Sbjct: 334 IDGLGAAIEPKQGKVIVILGGQGKGQDFS------LLRQSVEKYVKAAILIGEDAQQIEQ 387

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           AL  +  + ++ T+       Q      DVV++    +S             F   ++ L
Sbjct: 388 ALTETTQLVHASTLKDAVTQAQQYAQPEDVVLLSPACASFDMFKGYPDRGHQFVACVDAL 447

Query: 465 L 465
           +
Sbjct: 448 V 448


>gi|50083547|ref|YP_045057.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           sp. ADP1]
 gi|49529523|emb|CAG67235.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ADP1]
          Length = 455

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 75/421 (17%), Positives = 132/421 (31%), Gaps = 66/421 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ +G                  IPV G   VL          R  ++  I+AITGS
Sbjct: 89  IQQAIAQG------------------IPVIGDIQVL----------RRATQVPIVAITGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +         K      +   ++G P     +  + +  + EL    L    
Sbjct: 121 NAKSTVTTLFGQMAKDAGKRV----AVGGNLGRPGLDL-LKDEPELLVLELSSFQLETTS 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L       +AVI  ++  HL     +     AK  IF+G++K             +   
Sbjct: 176 HLNA----EVAVILNMSEDHLDRHGDMLGYHQAKHRIFQGVKKVVYNR--------DDSL 223

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +        + SFG +     Q    ++     W+             +  G H   N 
Sbjct: 224 TRPLVPDSTPMQSFGLNAPDIKQYGVLREDDGTMWLARGRTRLIKSSELYIQGTHNIANA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +   V++ ++ L  F   E R                ++S   N  +  AA
Sbjct: 284 LACLALGEAIGLPVESMLETLKQFKGLEHRC---EYVKTVNDVRYYNDSKGTNVGATLAA 340

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L       +G+ I +LG   +  + S      L        +    L G     ++ 
Sbjct: 341 IDGLGAAIEPKQGKVIVILGGQGKGQDFS------LLRQSVEKYVKAAILIGEDAQQIEQ 394

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           AL  +  + ++ T+       Q      DVV++    +S             F   ++ L
Sbjct: 395 ALTETTQLVHASTLKDAVTQAQQYAQPEDVVLLSPACASFDMFKGYPDRGHQFVACVDAL 454

Query: 465 L 465
           +
Sbjct: 455 V 455


>gi|256851857|ref|ZP_05557245.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661882|ref|ZP_05862792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931965|ref|ZP_06337429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297205481|ref|ZP_06922877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
 gi|256615815|gb|EEU21004.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547351|gb|EEX23331.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303907|gb|EFA96045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|297150059|gb|EFH30356.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus jensenii JV-V16]
          Length = 516

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/470 (14%), Positives = 124/470 (26%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  ISYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGATCYVAEQPFPE---GKGMHALV 86

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L      +      + S  N
Sbjct: 87  VRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSSVN 146

Query: 146 HIGVPLT----------------LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
            +  P                     M   VD G+  L M  S     +     +   + 
Sbjct: 147 DVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+         +    K ++     K                   +      
Sbjct: 207 FFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFPEVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            ++S    +N D ++              + K     +  + +      E     IG   
Sbjct: 267 YLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +  A+      A          G+            ++D ++N     
Sbjct: 327 EINGTAAIIGAGLGGAN---HEHASEGIRHVTISGRMETEKTKNHGLVVVDYAHN----K 379

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
                 +          + I V+G   + G      F   L+           +L+    
Sbjct: 380 ASMMALMGFMKKEFSNPKIIVVVGAPGDKGVSRRPGFSQSLSVFA-----DKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G    + + + +   I     +       +       S     DVV++  
Sbjct: 435 GFEDPMDIAEEIDAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICG 484


>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
 gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]
          Length = 767

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/433 (14%), Positives = 126/433 (29%), Gaps = 43/433 (9%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            +  +LL   + +     G +    + GI  DSR ++  + F    G       F+  A 
Sbjct: 241 MSLAELLDESKVVPISVYGDL-DVEITGIQHDSRGVSAGDLFVCCVGS----ESFLSEAD 295

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI-------- 113
           ++GA  VV + ++          +  V+D    L  LA +        +  I        
Sbjct: 296 KRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGK 355

Query: 114 ----------TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---PLTLARMPVDV 160
                       ++G  T                    +  N   V    L    +    
Sbjct: 356 TTTTYLIKSLYEAMGVRTGMFSTVSCYIHGDNKLDTPNATTNPDAVLVQSLMAKMLHNGT 415

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E   S           V   IAV T +   +       EE   A+A++F  +   
Sbjct: 416 EALVME--ASPQELALGKCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFARMVDP 473

Query: 221 GTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G      +          +     +  +    ++  AD     ++    ++ + V     
Sbjct: 474 GRHRKVVNIDDPNATFFVQQGNPNVPVVTFAMENTKADVHPLMFELSLFETQVLVNTPQG 533

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +E+    +G H   N+L  + +   + A ++  ++ +       GR +        G  
Sbjct: 534 ILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVI 593

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                + +           +L  I      R I V+G   E    ++     L   ++  
Sbjct: 594 VDHANTPDG-------LSRLLDSIRELKPRRIITVIGCEGE----NERGKRPLMTKIATE 642

Query: 400 NISHVWLSGFHVL 412
                 L+  +  
Sbjct: 643 KSDVTMLTSDNPR 655


>gi|77919798|ref|YP_357613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
 gi|122063252|sp|Q3A2G4|MURD_PELCD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77545881|gb|ABA89443.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           carbinolicus DSM 2380]
          Length = 450

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/441 (17%), Positives = 147/441 (33%), Gaps = 69/441 (15%)

Query: 48  GPHYD--GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--------- 96
           G  +D  GHD    A+  GA L+ ++           IP   V  V GAL          
Sbjct: 53  GLRFDCGGHD---AALLAGADLIAIS---------PGIP-LTVPAVAGALQAGVPVQGEI 99

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A        A ++AITG+ GK+TT  ++      I + +        ++G PL  A  
Sbjct: 100 EIAA---RELSAPMVAITGTNGKSTTTCLMG----EIMRCWGRRAFVGGNLGTPLIEATR 152

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D+ + E+    L  I       RP   ++  +   HL  ++G+ E  +AK  +FE 
Sbjct: 153 STDWDWIVAEISSFQLEAID----TFRPRYGMLLNLTADHLDRYAGMGEYVAAKLRLFEN 208

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +       +N D    + L  +S          F  S+  D  +       +   +  + 
Sbjct: 209 MTAEDVAVVNAD----DALVVRSTTDLPCRKIPFSSSRVLDEGMG-----FDGQHIVWRH 259

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+        +      N+   +  +     +      A        G   R       
Sbjct: 260 AGRQERFDVADLQLKGLHNVENVMAALIPPLMEGCPTDIAWKAVCGFSGLDHRMVLVREI 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              +  D+S   N  S+  +++ L        G    + G     G+     +  LA ++
Sbjct: 320 DGVSWYDDSKGTNVGSVVKSLAGLQ-------GPVTLIAG-----GKDKGGDYAPLAGLI 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK------ 450
               + H+ L G     ++ A      +  +++++      Q   + G  V++       
Sbjct: 368 GE-KVEHLILIGQAADRMQAAFQGMTTILRADSLEAAVQQAQQVTMAGGTVLLSPGCSSF 426

Query: 451 ------SSNSCGFYRLINLLL 465
                 +     F R +  L 
Sbjct: 427 DMFRSYAERGEVFCRAVQALQ 447


>gi|289570275|ref|ZP_06450502.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
 gi|289544029|gb|EFD47677.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T17]
          Length = 276

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
              + +S            R  +   T ++  HL     + +   
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFE 260


>gi|219558137|ref|ZP_03537213.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T17]
          Length = 262

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 22  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 81

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 82  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 201

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
              + +S            R  +   T ++  HL     + +   
Sbjct: 202 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFE 246


>gi|325978929|ref|YP_004288645.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|325178857|emb|CBZ48901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 483

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 67/459 (14%), Positives = 132/459 (28%), Gaps = 63/459 (13%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
                + IS DSR       FF  KG  +   +++  A++ G    V   D       L 
Sbjct: 32  ENPSFSKISFDSREADNSTLFFT-KGATFK-KEYLEQAIENGLTFYVSQVDY-----ELD 84

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           IP   V D+  A++ +A+           IIA TG+ GKTT        L    KT    
Sbjct: 85  IPAIIVTDIKKAMSLIAMEFYGHPENDLKIIAFTGTKGKTTAAYFAYNILKQSHKTAMFS 144

Query: 141 GSYNNHIGVPLTLARM----------------PVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                  G     +++                   +   I E+  S    +    + +  
Sbjct: 145 TMNTTLDGKTFFKSKLTTPESLDLFKMMAIAVQNGMTHLIMEV--SSQAYLVERVYGLTF 202

Query: 185 HIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            +     I+P H+        E+    K  +    +           +      A     
Sbjct: 203 DVGAFLNISPDHIGPIEHPTFEDYFYHKRLLMANSKAVVVNAGMDYFNVVAQQVAN---- 258

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                       +   +       + +++        +       IG    +N +     
Sbjct: 259 ---------TPHDFYGKDSDNTIENGRAFDFDVTGKLAGHYDIQLIGSFNQENAVAAGLA 309

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L   +    K ++            +          +D ++N +         +LS 
Sbjct: 310 CLRLGTSLADIQKGIAQTSVPGRMEVITQTNG---AKVFVDYAHNGDSLE-----KLLSV 361

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           +  H +G    +LG     GE  ++   D A V++ +   HV L+          A+ + 
Sbjct: 362 VEEHQKGDLHLILGATGNKGESRRA---DFARVINAHPNLHVILTADDPNYEDPQAIAEE 418

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDG-DVVVV--KS 451
           +   +   +      +       +   +  D V++  K 
Sbjct: 419 IASQVTRPLDIQVDREKAISQAMARTNNETDAVIIAGKG 457


>gi|332528823|ref|ZP_08404797.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
 gi|332041682|gb|EGI78034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Hylemonella gracilis ATCC 19624]
          Length = 554

 Score = 82.6 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 86/519 (16%), Positives = 157/519 (30%), Gaps = 80/519 (15%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            L T     Q ++        +     +S DSR +   + F A  G   DG  F+  A+ 
Sbjct: 7   ALHTPAQATQWLRERVGASGGE-----LSTDSRRVGAGDGFIAWPGAARDGRAFVPAALA 61

Query: 63  KGAGLVVVNTDMVASIGSL-----------SIPVFGVDDVLGALNKLAVAARLRSK--AT 109
           +GA   +V+   +A+                    G + +  A   +A     +      
Sbjct: 62  QGAAACLVDAPGLAAFADAYGLDASARAERIAAYAGPEGLKAASGPIAANYYGQPSQALE 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--------- 160
           ++AITG+ GKT+T   L  ALS+++ T  C       +G     A   V           
Sbjct: 122 VLAITGTNGKTSTAWWLAQALSALRPTAPCAMIGTLGVGRVTATAEEIVGTGLTTPDPVL 181

Query: 161 -----------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                       F    L  S +G +          +A+ T     HL     +     A
Sbjct: 182 LQQSLRRLADQGFSACALEASSIGIVERRLDGTHIRVALFTNFTQDHLDYHGSMAAYWQA 241

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--DFQLRKWKQCS 267
           KA +FE   +     +N DD     L     A     +++     ++    +    +  +
Sbjct: 242 KAALFE-WPQLPAAVVNVDDPQGAELARTLAARAGLDLWTCSLRADSAARLRANDIRMTA 300

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                E+    ++  +    +G +   N+L  +  +  L   +  A+ A    HP  GR 
Sbjct: 301 HGLRFEICEGAQTTSLQARTLGAYNVSNLLGVIATLRCLGFALADAVAACGELHPVPGRM 360

Query: 328 KRYRCALNQGFFT------------------------LIDESYNANPASMKAAISVLSQI 363
           + +   ++                             L    Y   P ++   +  L  +
Sbjct: 361 EFFSGGMSAAPGRPKQANIPSGGSEDTAVPSVGGNTPLAVVDYAHTPDALAQILQALRPL 420

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------L 414
           +    GR   V G     G         L    +  +   V L+  +  +         +
Sbjct: 421 AAQRGGRLWCVFG----CGGDRDPVKRPLMGEAAARHADRVVLTSDNPRSEPPQAIIEQI 476

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  LP                   ++    DVV+V  K 
Sbjct: 477 QRGLPPGCDAWVEPDRAVAIARALAAAQAPDVVLVAGKG 515


>gi|289804639|ref|ZP_06535268.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 132

 Score = 82.2 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +  +P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVAGLPARELREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      AS G +     +PV  +  +   L+ LA            ++A+TG+ GK
Sbjct: 61  AAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFYHEPSENMRLVAVTGTNGK 120

Query: 120 TTTKEMLTIALS 131
           TTT ++L     
Sbjct: 121 TTTTQLLAQWSQ 132


>gi|289447786|ref|ZP_06437530.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
 gi|289420744|gb|EFD17945.1| UDP-N-acetylMuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
           [Mycobacterium tuberculosis CPHL_A]
          Length = 404

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 215

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
              + +S            R  +   T ++  HL     + +   
Sbjct: 216 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFE 260


>gi|227889301|ref|ZP_04007106.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
 gi|227850103|gb|EEJ60189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus johnsonii ATCC 33200]
          Length = 509

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 69/471 (14%), Positives = 129/471 (27%), Gaps = 69/471 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 23  ISYDSRDIKTNTLFFC-KGK---GFRPTYLSMAKDSGATCYVAEQPYPE---GKGMHALV 75

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L   L  I      + S  +
Sbjct: 76  VRDVTKAMALLSAAFYRFPQDDLYVVAFTGTKGKTTSAYFLKGMLDQINGGRTALFSSVD 135

Query: 146 HIGVPLTLAR------------MPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIA 187
            I  P    +            +  D+   +        + +S     +     +   + 
Sbjct: 136 DIVGPKPEDKFKASLTTPESLDLFRDMRTAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I P H+   +     A       + +  +    +N     F+ + A   A      
Sbjct: 196 FFLNITPDHIGP-NEHPNFADYLHCKLQLMVNSRKCIINAMSDHFDEIYAA--ATTTTNP 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG------------------IG 289
            S       DF+    KQ  +  +  V+   K  E                       IG
Sbjct: 253 DSIYLFARNDFENPNLKQPIDFRFQSVETDMKETEFKLFCASDKAKKLPIAGDYTLQMIG 312

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +    +   + +   K +                 ++   T+I +  +  
Sbjct: 313 DFNEMNGTAAIIGAGLAGENYEECAKGIRHVTIPGR----MEALPSKNHGTVIVDYAHNK 368

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +   A+    Q   +     + V       G+   S     +E L+ Y       +  
Sbjct: 369 --ASMMALMSFMQREFNTPKIIVVV----GAPGDKGVSRRPGFSESLTAYADKAFLTTDD 422

Query: 409 ---FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
                 + +   +   I     +       +       +     D+V++  
Sbjct: 423 PGFEDPMDIAQEIDAGIDHKKVDVTIELDREKAIHDAIAMSDKDDIVLICG 473


>gi|218886345|ref|YP_002435666.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757299|gb|ACL08198.1| Mur ligase middle domain protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 546

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 125/370 (33%), Gaps = 24/370 (6%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMP 157
           A    LR   T+IA+TGS GKT+ K +L   L     T    GS N  +G+   +  R+ 
Sbjct: 168 AHEKLLRLAPTVIAVTGSYGKTSVKHILAHVLGCYHPTLMTPGSINTPMGISRIIRERLT 227

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F I E+G   +G I  L  L  P  A+IT + PAH   F  +  +  AK E+    
Sbjct: 228 DAHRFFIAEMGAYGIGSIERLCRLAPPDFAIITNVGPAHYERFKDLATVVRAKFELAHAT 287

Query: 218 E-------------KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                                    +   +L+     +                ++    
Sbjct: 288 VARGGRVVLPAALLAYDHARDFAAANAGAVLRCAGADVNADAGAGGAGVAEPSVRVLDAG 347

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           Q        +  Q +  EV     G H   N+ +       +  +    + AL       
Sbjct: 348 QDLSGIHARLLYQEQEYEVRAPIHGMHHVDNVALAFAAACGVGVEPQRVVSALR---SLP 404

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R           LID++YN+NP+   +A+ +L      G+   + V   M E+G L
Sbjct: 405 QIAHRLEVKPQPDGSVLIDDAYNSNPSGFASALDLLDLYRKSGQR-GVLVTPGMVELGTL 463

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQS 439
             S H +L    +      +           V A + A      V           ++ +
Sbjct: 464 HDSAHAELGARAAACA-DVLLAVAPARIPTLVEAFRAAAGPDQLVVECADFAAARAWLAA 522

Query: 440 SLVDGDVVVV 449
           ++  GD V++
Sbjct: 523 NIGPGDAVLL 532


>gi|309798581|ref|ZP_07692856.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
 gi|308117817|gb|EFO55218.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Streptococcus infantis SK1302]
          Length = 162

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 17/158 (10%)

Query: 1   MNPLWTFHDLLQ--------AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+          QGH          + I  DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDDLFREIIDQGHYHYNYSDVVFDSICYDSRKAQENCLFF-VKGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +F+L A+ +G G  V   D       + IPV  V D+  A++ +A+      + K  I
Sbjct: 60  -KEFLLSAIAQGLGWYVAEQDY-----EVDIPVIVVSDIKKAMSLIAMEFYGNPQEKLKI 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           +A TG+ GKTT        L+   +            G
Sbjct: 114 LAFTGTKGKTTAAYFAYNILNQQYRPAMLSTMNTTLDG 151


>gi|238854409|ref|ZP_04644751.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|260665100|ref|ZP_05865950.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931813|ref|ZP_06337298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
 gi|313473004|ref|ZP_07813491.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|238833031|gb|EEQ25326.1| UDP-N-acetylmuramyl-tripeptide synthetase [Lactobacillus jensenii
           269-3]
 gi|239528789|gb|EEQ67790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus jensenii 1153]
 gi|260561154|gb|EEX27128.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304120|gb|EFA96237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Lactobacillus jensenii 208-1]
          Length = 516

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 75/470 (15%), Positives = 133/470 (28%), Gaps = 67/470 (14%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           IS DSR I     FF  KG    G    ++  A   GA   V             +    
Sbjct: 34  ISYDSRDIQTNTLFFC-KGA---GFRPTYLSMAKDNGATCYVAEQPFPE---GKGMHALV 86

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V DV  A+  L+ A     +    ++A TG+ GKTT+   L      +      + S  N
Sbjct: 87  VRDVTKAMALLSAAFYRFPQDDLFLVAFTGTKGKTTSAYFLKGIFDKMNGGKTALFSSVN 146

Query: 146 HIGVPLT----------------LARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIA 187
            +  P                     M   VD G+  L M  S     +     +   + 
Sbjct: 147 DVVGPKPEDTFKSSLTTPESLDLFRNMRRAVDNGMTHLVMEVSSQAYKKNRVFGLTYDLG 206

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I P H+         +    K ++     K          S        +      
Sbjct: 207 FFLNITPDHIGPNEHPNFADYLHCKLQLLVNSRKCIINAETDHFSEVYAAATTTTNPDSI 266

Query: 246 TIYSFGKSKNADFQLR-------------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            ++S    +N D ++              + K     +  + +      E     IG   
Sbjct: 267 YLFSRQGYENPDLKVPVDFLFKSEETDLIETKFQLFCASDKAKHLAIEGEYTLDMIGDFN 326

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +  A+ D A + +                  +    ++ + Y  N AS
Sbjct: 327 EINGTAAIIGAGLGGANHDHAAEGIRHVTIPGR----METEKTKNHGLVVVD-YAHNKAS 381

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLS---- 407
           M A +  + +   + +   I V+G   + G      F   L+           +L+    
Sbjct: 382 MMALMGFMKKEFSNPK--IIVVVGAPGDKGVSRRPGFSQSLSVFA-----DKAFLTTDDP 434

Query: 408 G-FHVLALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVVKS 451
           G    + + + +   I     +       +       S     DVV++  
Sbjct: 435 GFEDPMDIAEEINAGIDHAKVDVTIELDREKAIREAISMAGKNDVVLICG 484


>gi|289758280|ref|ZP_06517658.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
 gi|289713844|gb|EFD77856.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis T85]
          Length = 417

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/225 (20%), Positives = 80/225 (35%), Gaps = 23/225 (10%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 18  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 77

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 78  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 137

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIF 165
           GKTTT  ++   L +  +    IG+    +G             P   A +   V+ G+ 
Sbjct: 138 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVD 197

Query: 166 E--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
              + +S            R  +   T ++  HL     + +   
Sbjct: 198 TVVMEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFE 242


>gi|116627264|ref|YP_819883.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMD-9]
 gi|122268133|sp|Q03M85|MURE_STRTD RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116100541|gb|ABJ65687.1| UDP-N-acetylmuramyl tripeptide synthase [Streptococcus thermophilus
           LMD-9]
 gi|312277751|gb|ADQ62408.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus thermophilus ND03]
          Length = 481

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 129/445 (28%), Gaps = 64/445 (14%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP
Sbjct: 33  VTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A++ +A A     + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AILVSDIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTTASYFAFNILKQSHKPAMLSTM 145

Query: 143 YNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                G     + +                   +   I E+  S    +    + +   +
Sbjct: 146 NTTLDGKTFFKSNLTTPESLDLFRMMAEAVSNGMTHLIMEV--SSQAYLTKRVYGLTFDV 203

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + +  +            F     A       
Sbjct: 204 GVFLNISPDHIGPIEHPTFEDYFYHKRLLLKNSQAVIVNSGMNHFDFVAEEVA------- 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K  +   +  +        +        + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++            +    + F        + +         +L  ++
Sbjct: 311 RLGASLEDIKKGIAQTSVPGRMEILTQANGAKVFVDYAHNGDSLD--------KLLQVVT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALK 415
            H +G+   +LG     GE  +    D   VL+ Y   +V LS               + 
Sbjct: 363 DHQKGKISLILGAPGNKGESRRQ---DFGHVLNTYPEINVILSTDDPNKEDPLTICQEIA 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSS 440
             + R + +      +       S 
Sbjct: 420 SHINRKVRIII--DREEAIKTAMSE 442


>gi|19553363|ref|NP_601365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62391002|ref|YP_226404.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum ATCC 13032]
 gi|145296125|ref|YP_001138946.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Corynebacterium glutamicum R]
 gi|41326341|emb|CAF20503.1| PROBABLE UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846045|dbj|BAF55044.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 521

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 86/491 (17%), Positives = 145/491 (29%), Gaps = 57/491 (11%)

Query: 6   TFHDLLQAIQGHSIGIVP--------QGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDF 56
           T  DL + I G   G           +  +  I +DS S+      F A+ G    G  F
Sbjct: 4   TLLDLTKLIDGILKGSAQGVPAHAVGEQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQF 63

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIA 112
                   A  ++ +   +  +       PV  VDDV   L   + +         T+I 
Sbjct: 64  AGTDNAAKAVAILTDAAGLEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIG 123

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDV 160
           +TG+ GKTTT  +L   L         IG+    I              P   A      
Sbjct: 124 VTGTSGKTTTSYLLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMR 183

Query: 161 DFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D G+    + +S               +A  T ++  HL     +++   AKA  F    
Sbjct: 184 DHGVTHVVMEVSSHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADS 243

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                            +  S A  ++T+ + G+  +             QS+       
Sbjct: 244 PLVADKQVVCVDDSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSN 303

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +S +V     G     N  +     + +  D +   + +S        G+  R    Q F
Sbjct: 304 QSYQVELALPGAFNVANATLAFAAAARVGVDGEAFARGMSK---VAVPGRMERIDEGQDF 360

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++     +      VL  +    +GR   V+G     G    S        LS 
Sbjct: 361 LAVVDYAHKPAAVAA-----VLDTLRTQIDGRLGVVIGA----GGDRDSTKRGPMGQLSA 411

Query: 399 YNISHVWLSGFHVLA-------------LKDALPRSIH-VHYSE--TMDGLFLFIQSSLV 442
                V ++  +  +              +     S   V   E          +     
Sbjct: 412 QRADLVIVTDDNPRSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQ 471

Query: 443 DGDVVVV--KS 451
            GD +VV  K 
Sbjct: 472 PGDGIVVAGKG 482


>gi|291336143|gb|ADD95723.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C161]
          Length = 833

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 15/132 (11%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH-------YDGHDFILHAV 61
           D+++ I    +       ++GI  D+R   P + F  +   +       +DGHD +  A+
Sbjct: 87  DVVKWID---LEEEEDVEISGIVSDARYAIPGDLFVCV--DNSSDDQDPHDGHDDVSDAI 141

Query: 62  Q-KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII--AITGSVG 118
             +GA  VV   +   +  +   PV  V    G L K+  A        ++   + G  G
Sbjct: 142 ALRGAVAVVSEREDGVAENANGAPVAVVKSTKGILGKIGKAFYEDPSGKLVIAGVLGHRG 201

Query: 119 KTTTKEMLTIAL 130
           K TT  ++    
Sbjct: 202 KDTTCNLIKSIF 213


>gi|93007201|ref|YP_581638.1| UDP-N-acetylmuramyl-tripeptide synthetases [Psychrobacter
           cryohalolentis K5]
 gi|92394879|gb|ABE76154.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter cryohalolentis K5]
          Length = 570

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 150/492 (30%), Gaps = 74/492 (15%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGS 80
                   +DSR +A  + F  +K    +     D +  A    A  ++   D  A + +
Sbjct: 59  NIPFQQFCLDSRQLASNDVFVLLKSHTPNCQKSRDHLYQAANN-AAFILSEIDPRALLNT 117

Query: 81  LSI-------------------------PVFGVDDVLGALNKL--AVAARLRS--KATII 111
            S+                         PV  V ++   L  L  A     +     T+I
Sbjct: 118 TSVSNHADITLPNDSTAKAQQQLVALPCPVLHVPNIRDFLGTLIQARLQYQQPVTLPTVI 177

Query: 112 AITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---- 166
           A+TG+ GKTT  +++      +   +     + N   G  +  +    DV          
Sbjct: 178 AVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRFGALVQASHTTGDVLAVQQFLYQM 237

Query: 167 ---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFE 215
                    L  S  G  +     +   +A+ T ++  HL   + + E   A AK     
Sbjct: 238 GKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFDKA 297

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEV 274
                    +N DD   +++   +HA  +    YS    K A F             + +
Sbjct: 298 HFPDLTHAIINIDDEHAQIMLDTAHASNLTVWTYSLDSLKTATFVAANITPSLRGVEISL 357

Query: 275 QLQGKSMEVVHHGIGYH--MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +       + H  I        N+   L  ++   A   +     +V    +G   R + 
Sbjct: 358 RTDFDDGTMNHLDIVSPLLGRFNVANLLAAMAAAVALGISLEHIAAVVPQLQGAVGRMQR 417

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             +     ++D ++  +  S      VL+ +  H +G+  AV G     G    +    L
Sbjct: 418 VPSNDGCFIVDYAHTPDALS-----QVLASLKTHCKGQLWAVFG----CGGDRDAGKRPL 468

Query: 393 AEVLSLYNISHVWLSGFHVL-----ALKDALPRSI------HVHYSETMDGLFLFIQSSL 441
                L     V L+  +       A+   +   +        H          +  +  
Sbjct: 469 MAQAGLAGADKVVLTADNPRTEDPNAILQDMQVGMSTEQYQRTHIEPARQAAIEYAVNQA 528

Query: 442 VDGDVVVV--KS 451
              D+VV+  K 
Sbjct: 529 AADDIVVIAGKG 540


>gi|325690643|gb|EGD32644.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK115]
          Length = 481

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 161/514 (31%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVSAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANGRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N D   F+++K +  ++      +   +   D Q   ++   + +  
Sbjct: 232 LMDHSR---AVIVNSDMDHFQIVKEQVASMEHDFYGAGSSNTITDSQAFSFEAAGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAIAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKVFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         +A+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPIAIAEEIASYISYPVEKIADREEAIKKALSLTDQEG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVAYPGDYALAEKY 480


>gi|226943448|ref|YP_002798521.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Azotobacter vinelandii DJ]
 gi|226718375|gb|ACO77546.1| UDP-N-acetylmuramyl-tripeptide synthetase [Azotobacter vinelandii
           DJ]
          Length = 487

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/461 (15%), Positives = 149/461 (32%), Gaps = 41/461 (8%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                    +  +++DSR + P + F A+ G   DG   I  A+ +GA  V        S
Sbjct: 9   LPQAETALLIRELTLDSRQVRPGDLFLAVPGGRQDGRAHIPDALARGAAAVAYEAAGAPS 68

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKK 135
                +P+  +  + G L+ +A            ++ +TG+ GKT+  ++L  AL  + +
Sbjct: 69  FADGGVPLVPIKGLAGQLSAIAGRFYGEPSRALCLVGVTGTNGKTSVSQLLAQALDLLGE 128

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHL 181
               IG+  N     L   R        +                + +S     +     
Sbjct: 129 RCGIIGTLGNGFHGALQSGRHTTPDPISVQAALAGLKQAGARAVSMEVSSHALAQGRVSA 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +A+ T ++  HL     ++   +AKA +           LN DD F  LL  +++A
Sbjct: 189 LDFDVAIFTNLSRDHLDYHGSMDAYGAAKARL-FAWPGLRCRVLNLDDPFGRLLAGEANA 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +       +S     +    +   ++  +  ++     E + H           +   
Sbjct: 248 SRLIGYSLESRSAQVHCR----RAHFDEQGVRAEVATPQGEGLLHSPLLGRFNLSNLLAV 303

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + ++L  D         V   +   G+  R         ++D ++  +         VL 
Sbjct: 304 VGALLGLDYALDEILRVVPQLQAPAGRMQRLGGGAKPLVVVDYAHTPDALE-----KVLE 358

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
            + PH  GR + + G     G         L   ++      + ++  +           
Sbjct: 359 ALRPHVRGRLLCLFG----CGGDRDRGKRPLMAAVAERLADALLITDDNPRSESPEQIFA 414

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +     V            + +     DV+++  K 
Sbjct: 415 DIRSGIGVPEKVTCLHGRGQAIARLIAGADASDVLLLAGKG 455


>gi|116490935|ref|YP_810479.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
 gi|116091660|gb|ABJ56814.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni PSU-1]
          Length = 499

 Score = 82.2 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 150/474 (31%), Gaps = 61/474 (12%)

Query: 16  GHSIGIVPQGF--VNGISIDSRSI-APQEAFFAIKGP-HYDGHDFILHAVQKGAGLVVVN 71
           G  +    +     + +  DSR +      F  +KG       +++  ++      +V +
Sbjct: 18  GILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFKI---EYLTASLLDKISGIVTS 73

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
                 I   ++P + V +   AL  L+         K  I+ ITG+ GKT++  M    
Sbjct: 74  RK--EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKLKILGITGTKGKTSSTYMAYSL 131

Query: 130 LSSIKKTYA-----------CIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSH 171
           L  +                    + + +  P            +     + + E+  S 
Sbjct: 132 LDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEV--SS 189

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              ++     +   +     I+P H+         +  + K  + E  +   +   +   
Sbjct: 190 QSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLAHKKMLAENSDVFVSNIDDAHG 249

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             F        A  +    S  ++K AD      K   ++S   +  +G S E +    G
Sbjct: 250 QEFIDHAKSFGAKTV----SVSENKKADVNFHIKKADLDESIFYLTEKGNSQEFLLDIPG 305

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N  + + +V  +    + A KAL+            +         ++D ++N  
Sbjct: 306 VFNIYNASVAIAMVREMGFKPEKAKKALAELQIPGR---MVKIKTKSHGLIIVDYAHNGQ 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +           S H  G+ I VLG   + GE  +S      EV+S + +   +L+  
Sbjct: 363 AVTTLLTF----LKSQHQGGKIIIVLGSPGDKGEDRRS---QFGEVISKF-VDVAYLTTD 414

Query: 410 HV---------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++ A+   ++ +H                   D+VV+  K 
Sbjct: 415 DPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAAKG 468


>gi|118586530|ref|ZP_01543973.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
 gi|118433034|gb|EAV39757.1| UDP-N-acetylmuramyl tripeptide synthase [Oenococcus oeni ATCC
           BAA-1163]
          Length = 499

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/474 (15%), Positives = 149/474 (31%), Gaps = 61/474 (12%)

Query: 16  GHSIGIVPQGF--VNGISIDSRSI-APQEAFFAIKGP-HYDGHDFILHAVQKGAGLVVVN 71
           G  +    +     + +  DSR +      F  +KG       +++  ++      +V +
Sbjct: 18  GILVEKPSEIKRRFDDLQFDSRKVTKKNTLFV-VKGAFKI---EYLTASLLDKISGIVTS 73

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIA 129
                 I   ++P + V +   AL  L+         K  I+ ITG+ GKT++  M    
Sbjct: 74  R--TEKIDLPNLPHWIVSNSQIALAVLSAEFFVHPEKKLKILGITGTKGKTSSTYMAYSL 131

Query: 130 LSSIKKTYA-----------CIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSH 171
           L  +                    + + +  P            +     + + E+  S 
Sbjct: 132 LDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEV--SS 189

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              ++     +   +     I+P H+         +  + K  + E  +   +   +   
Sbjct: 190 QSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLAHKKMLAENSDVFVSNIDDAHG 249

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             F        A  +    S  ++K AD      K   ++S   +  +G S E +    G
Sbjct: 250 QEFIDHAKSFGAKTV----SVSENKKADVNFHIKKADLDESVFYLTEKGNSQEFLLDIPG 305

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N  + + +V  +    + A KAL+            +         ++D ++N  
Sbjct: 306 VFNIYNASVAIAMVREMGFKPEKAKKALAELQIPGR---MVKIKTKSHGLIIVDYAHNGQ 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +           S H  G+ I VLG   + GE  +S      EV+S + +   +L+  
Sbjct: 363 AVTTLLTF----LKSQHQGGKIIIVLGSPGDKGEDRRS---QFGEVISKF-VDVAYLTTD 414

Query: 410 HV---------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++ A+    + +H                   D+VV+  K 
Sbjct: 415 DPGTEDPHQINNQIRKAISNPDVELHEELDRSKAIQAAIKKANTNDLVVLAAKG 468


>gi|195978717|ref|YP_002123961.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975422|gb|ACG62948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           MurE [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 481

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 67/437 (15%), Positives = 131/437 (29%), Gaps = 60/437 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  + V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGATFKA-DFLKQAIAKGLKIYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A++  A+A     + K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQHKLKLLAFTGTKGKTTAAYFAYHMLKESHKPALLSTMNT 147

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G     +++                   +   + E+  S    +    + +   + V
Sbjct: 148 TLDGKSFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEV--SSQAYLVGRVYGLIFDVGV 205

Query: 189 ITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E              +      A         
Sbjct: 206 FLNISPDHIGPIEHPSFEDYFYHKRLLMENSRAVVVNSGMEHFNILAEQVA--------- 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                K  +   +    +    Q++        + +     IG    +N +        L
Sbjct: 257 ----DKPHDFYGKGACNRLLQRQAFSFQAAGKLAGDYAIQLIGSFNQENAMAAGLACLRL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A ++     ++                     T   +       +  +   +LS +  H
Sbjct: 313 GASLEDIRLGIAKTRVPGRM--------EVLTMTNQAKIVVDYAHNGDSLEKLLSVVEEH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
            +G+   +LG     GE  ++   D  +V++ +    + L+           + + +   
Sbjct: 365 QKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVRIILTADDPNFEDPQLISEEIASY 421

Query: 422 IH--VHYSETMDGLFLF 436
           IH  V            
Sbjct: 422 IHREVDIIIDRKEAIKA 438


>gi|6634694|emb|CAB64542.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA   + +
Sbjct: 62 GAAATLSD 69


>gi|312869241|ref|ZP_07729413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
 gi|311095262|gb|EFQ53534.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus oris PB013-T2-3]
          Length = 516

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 83/504 (16%), Positives = 144/504 (28%), Gaps = 77/504 (15%)

Query: 2   NPLWTF---HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
            P  T    H LL          +       ++ DSR +     FF  KG      +F+ 
Sbjct: 6   TPALTLLREHHLLDHT-----KNLTDFTATSVAYDSRKVTAGTLFFC-KG------NFLP 53

Query: 59  H----AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIA 112
                A  +GA   V   +         +P   V D   A+  L  A     + + TIIA
Sbjct: 54  KYLTMAKGQGAVAYVAEQEYSE---GGDLPAIIVKDEQKAMALLGAAFYGFPQDELTIIA 110

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYA-------------CIGSYNNHIGVP-----LTLA 154
           ITG+ GKTTT  M    L      +                  + + +  P         
Sbjct: 111 ITGTKGKTTTAYMADHVLGRATDHHVALFSTLDRVLGNGPDDRFKSDLTTPESLDLFHDM 170

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
           R  VD       + +S     +  T+ +   I +   I+P H+         +    K +
Sbjct: 171 RAAVDNGMTHLVMEVSSQAYKKHRTYGLHFDIGIFLNISPDHIGRNEHPTFADYLHCKEQ 230

Query: 213 IFEGLEKT------------GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
           +                                 L A+  A       +    +  +   
Sbjct: 231 LLVNSRVCLINAETADLADVYYTAKATTQPEDIYLFARHGAQVQLPEGAAIDFEYRNDLE 290

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   E +    + +   ++  +                I+S   A       A ++ 
Sbjct: 291 DLHESEFELAACTPKAERLGLQRRYKTSVPGDYNEGNAVAAIISTALAGATAEDAAATLD 350

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
           H       R      +   T+  + Y  N AS+K  ++ L        G+   VLG    
Sbjct: 351 H--VHIKGRMEMQKTRQHGTIYID-YAHNYASLKRLLAFLK--RQTAAGKVTVVLGA--- 402

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS----G-FHVLALKDALPRSI------HVHYSET 429
            G+   S      + LS  +   + L+    G    + +   +   I       + Y   
Sbjct: 403 TGDKGISRRQGFGKALSEEHPDQIILTTDDPGFEDPMKIAREINSHIDHDQVGEIQYIMD 462

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                     S  +GD+VV+  K 
Sbjct: 463 RPTAIKAAIDSSGNGDIVVLAGKG 486


>gi|262364614|gb|ACY61171.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diami nopimelate
           ligase [Yersinia pestis D182038]
          Length = 127

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 4/92 (4%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            VP+  +  +++DSR  A  + F A+ G   DG  +I  A+ +G   +V   D VA   S
Sbjct: 16  DVPERALREMTLDSRIAAAGDLFVAVVGHQTDGRRYIPQAIAQGVAAIVAEADGVAPDVS 75

Query: 81  L----SIPVFGVDDVLGALNKLAVAARLRSKA 108
           +     +PV  + ++   L+ LA     +  A
Sbjct: 76  VAEIHGVPVIYLRNLNQHLSTLAGQFYHQPGA 107


>gi|89902199|ref|YP_524670.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
 gi|89346936|gb|ABD71139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodoferax ferrireducens T118]
          Length = 538

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 72/435 (16%), Positives = 129/435 (29%), Gaps = 53/435 (12%)

Query: 27  VNG-ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           V G +  DSR + P + F A  G   D   F+  A+  GAG  +V      +    S  V
Sbjct: 18  VTGTLQTDSRKLQPGDGFIAWPGAAADARQFVASALASGAGACLVERLGAEAYAFSSDKV 77

Query: 86  FGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
               ++  A   +A A   +      ++A+TG+ GKT+T   L  ALS++K         
Sbjct: 78  AAYANLKAASGLIAAAYFDQPSQQLDVLAVTGTNGKTSTAWWLAQALSNLKLVTPIPCGL 137

Query: 144 NNHIG---------------------------------------VPLTLARMPVDVDFGI 164
              +G                                       +     R  VD  F  
Sbjct: 138 VGTLGIGTPPPPASGQPPVGLVAAHGADPLAGMVATGLTTPDPVLLQQALRRFVDRGFQA 197

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             L  S +G      +      A+ T     HL     +      KA +F+       + 
Sbjct: 198 CALEASSIGLQEQRLNGTHIRTAIFTNFTQDHLDYHGAMAAYWQVKASLFQWPGLQSAVI 257

Query: 225 LNYDD---SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS---EQSWMEVQLQG 278
              D       E L+ K   +   +  +  + +  D             E         G
Sbjct: 258 NIDDPQGAELAETLRGKLLDVWTVSCVAEARLQACDIVHDAPGLRFTVLEHGPDGANGPG 317

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            + +          + N+   LG+++ +          ++          R  C    G 
Sbjct: 318 GAGQRHVLQTRLIGSYNVANLLGVMAAMRCLGVPLAAVVASCADLTAVPGRMECWGAPGQ 377

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                + Y   P ++  A+  L  ++    GR   V G     G    +    L   ++ 
Sbjct: 378 PLAAVD-YAHTPDALGKALQALRPLADQRGGRLWCVFG----CGGDRDTAKRPLMGAIAA 432

Query: 399 YNISHVWLSGFHVLA 413
            +   V ++  +  +
Sbjct: 433 SHADCVVVTSDNPRS 447


>gi|58697149|ref|ZP_00372575.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
 gi|58536545|gb|EAL59906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila simulans]
          Length = 423

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/447 (13%), Positives = 131/447 (29%), Gaps = 52/447 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL     + I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLH----NIIDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117
           A  ++ +  +  ++    IP           +     +++        +   + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMP-------------VDVDF 162
           GKT+  E       +     A IG+     + G       +              + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S  G  ++  H ++   A  T  +  HL     +      K  +F  +   G 
Sbjct: 174 LVLE--SSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +   D        K        + ++GK K +D  L +         + V++  +   
Sbjct: 232 TAILNADIDEYGALLKIAEKRSNKVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQIYN 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+L  +GI  +   ++             E              F  +
Sbjct: 291 TFFPVLGKFQAYNLLCAIGISGLNYREIC-----------VEKLVSPPGRMEKVKPFAFV 339

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +          L  +  H   + I V G     G             ++     
Sbjct: 340 DYAHTPSA-----LKQALLSLKWHINKKIILVFG----CGGNRDQTKRSEMGKIAQMYAD 390

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET 429
            V ++  +      A  R   + +   
Sbjct: 391 KVIITDDNSRDEDPAKIRHDILLHCPD 417


>gi|290890409|ref|ZP_06553484.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
 gi|290479805|gb|EFD88454.1| hypothetical protein AWRIB429_0874 [Oenococcus oeni AWRIB429]
          Length = 499

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 150/474 (31%), Gaps = 61/474 (12%)

Query: 16  GHSIGIVPQGF--VNGISIDSRSI-APQEAFFAIKGP-HYDGHDFILHAVQKGAGLVVVN 71
           G  +    +     + +  DSR +      F  +KG       +++  ++      +V +
Sbjct: 18  GILVEKPSEIRRHFDDLQFDSRKVTKKNTLFV-VKGAFKI---EYLTASLLDKISGIVTS 73

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIA 129
                 I   ++P + V +   AL  L+         K  I+ ITG+ GKT++  M    
Sbjct: 74  RK--EKINIPNLPHWIVSNSQIALAVLSAEFFGHPEKKLKILGITGTKGKTSSTYMAYSL 131

Query: 130 LSSIKKTYA-----------CIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSH 171
           L  +                    + + +  P            +     + + E+  S 
Sbjct: 132 LDRLTNHQTAMFSTIDTFLGRGIKFKSELTTPESYELFSNMKKALDNGNKYLVMEV--SS 189

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              ++     +   +     I+P H+         +  + K  + E  +   +   +   
Sbjct: 190 QSYLKNRVFGIHFKVGAFLNISPDHIGINEHPTFADYLAHKKMLAENSDVFVSNIDDAHG 249

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
             F        A  +    S  ++K AD      K   ++S   +  +G S E +    G
Sbjct: 250 QEFIDHAKSFGAKTV----SVSENKKADVNFHIKKADLDESIFYLTEKGNSQEFLLDIPG 305

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N  + + +V  +    + A KAL+            +         ++D ++N  
Sbjct: 306 VFNIYNASVAIAMVREMGFKPEKAKKALAELQIPGR---MVKIKTKSHGLIIVDYAHNGQ 362

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +           S H  G+ I VLG   + G+  +S      EV+S + +   +L+  
Sbjct: 363 AVTTLLTF----LKSQHQGGKIIIVLGSPGDKGKDRRS---QFGEVISKF-VDVAYLTTD 414

Query: 410 HV---------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++ A+   ++ +H                   D+VV+  K 
Sbjct: 415 DPGTEDPHQINNQIRKAISNPNVELHEELDRSKAIQEAIKKANINDLVVLAAKG 468


>gi|305664536|ref|YP_003860823.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
 gi|88708553|gb|EAR00789.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Maribacter sp. HTCC2170]
          Length = 444

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 116/383 (30%), Gaps = 47/383 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A        ATII ITGS GKTTT  +                    +IG        
Sbjct: 94  EFAARY---IDATIIGITGSNGKTTTTMLTNHIFKEEGLDVGM----AGNIGDSFAKMVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             D D  + E+    L       +  RPHIA+IT I P HL  +    E   ++K  I E
Sbjct: 147 ENDHDNYVLEISSFQLD----GINDFRPHIAIITNITPDHLDRYEYKFENYVASKFRIAE 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K   +  + DD        K     I   +S          L+  +   +       
Sbjct: 203 NQSKEDYLIYDADDEVIVEWLNKHPVKSILMPFSIKNELTQGAYLKNDRIIIK----TNN 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              + M       G H  +N +       ++    +T   +++ F        R    L 
Sbjct: 259 ETLEMMTSTLALEGKHNLKNTMAAATAAKLIGIRKETIRASIANFQG---AEHRLEKVLK 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  +S  +    G            G    + + +L  +
Sbjct: 316 IQHVQYINDSKATNVNATYYALDSMSAPTVWIVG------------GVDKGNDYKELMPL 363

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV---K 450
           +    +  +   G     + DA    + +   ET  M+            GD V++    
Sbjct: 364 VRE-KVKAIICLGNDNSKIVDAFGNVVDLM-VETYAMEEAVKVAYKIAERGDTVLLSPAC 421

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F   I  L
Sbjct: 422 ASFDLFENYEDRGHQFKEAIKNL 444


>gi|297516905|ref|ZP_06935291.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Escherichia coli OP50]
          Length = 153

 Score = 81.8 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
             ++      A+ G +     +PV  +  +   L+ LA            ++ +TG+ GK
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120

Query: 120 TTTKEMLTIALS 131
           TTT ++L     
Sbjct: 121 TTTTQLLAQWSQ 132


>gi|6624710|emb|CAB63850.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634560|emb|CAB64460.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634565|emb|CAB64464.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634570|emb|CAB64468.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634575|emb|CAB64472.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634580|emb|CAB64476.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634585|emb|CAB64480.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634622|emb|CAB64502.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + +  
Sbjct: 62 GAAVTLSE 69


>gi|325696310|gb|EGD38201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK160]
          Length = 481

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 154/489 (31%), Gaps = 71/489 (14%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKKDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVTAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANDRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     F+++K +  ++      +   +   D Q   ++   + +  
Sbjct: 232 LMDHSR---AVIVNSGMDHFQIVKEQVASMEHDFYGAGSSNTITDSQAFSFEAAGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGHFNQE-------------NAVAAGLACLRLGASLEDIKKGIATTRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKIFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREG 447

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 448 DAVILAGKG 456


>gi|55820442|ref|YP_138884.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus LMG 18311]
 gi|55822326|ref|YP_140767.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus thermophilus CNRZ1066]
 gi|81559795|sp|Q5M1B4|MURE_STRT1 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|81560965|sp|Q5M5V0|MURE_STRT2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|55736427|gb|AAV60069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus LMG 18311]
 gi|55738311|gb|AAV61952.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus
           thermophilus CNRZ1066]
          Length = 481

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 129/445 (28%), Gaps = 64/445 (14%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + +S DSR I P   FFA KG  +   +F+  AVQ G G  V   D       + IP
Sbjct: 33  VTFDHLSYDSRDITPSTLFFA-KGAGFK-LEFLESAVQAGLGFYVAEKDY-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
              V D+  A++ +A A     + K  ++A TG+ GKTT        L    K       
Sbjct: 86  AILVSDIKQAMSLVAQAFYQHPQDKLKLLAFTGTKGKTTASYFAFNILKQSHKPAMLSTM 145

Query: 143 YNNHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                G     + +                   +   I E+  S    +    + +   +
Sbjct: 146 NTTLDGKTFFKSNLTTPESLDLFRMMAEAVSNGMTHLIMEV--SSQAYLTKRVYGLTFDV 203

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + +  +            F     A       
Sbjct: 204 GVFLNISPDHIGPIEHPTFEDYFYHKRLLLKNSQAVIVNSGMNHFDFVAEEVA------- 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                  K  +   +  +        +        + +     IG     N +       
Sbjct: 257 ------DKDHDFYGKDSENTVKHSSGFSFKAKGKLAGDYDIQLIGDFNQDNAMAAGLACL 310

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L A ++   K ++            +    + F        + +         +L  ++
Sbjct: 311 RLGASLEDIKKGIAQTSVPGRMEILTQANGAKVFVDYAHNGDSLD--------KLLQVVT 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV---------LALK 415
            H +G+   +LG     GE  +    D   VL+ Y   +V LS               + 
Sbjct: 363 DHQKGKISLILGAPGNKGESRRQ---DFGHVLNTYPEINVILSTDDPNKEDPLTICQEIA 419

Query: 416 DALPRSIHVHYSETMDGLFLFIQSS 440
             + R + +      +       S 
Sbjct: 420 SHINRKVRIII--DREEAIKTAMSE 442


>gi|254430365|ref|ZP_05044068.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
 gi|197624818|gb|EDY37377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Cyanobium sp. PCC 7001]
          Length = 500

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 71/482 (14%), Positives = 139/482 (28%), Gaps = 42/482 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  L   H LL+ +       + +  V+ IS DSR + P   F  + G   DG  +   A
Sbjct: 1   MTHL--LHPLLRDVGLQVPEALGEATVHTISCDSRRVGPGTLFVGLPGTQVDGGAYWRSA 58

Query: 61  VQKGAG-------------------LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           ++ GA                    +VVV   +    G L+   +G      AL  +   
Sbjct: 59  LKSGACAAVVGTAAAAADPPSTTDPVVVVEGPVARWAGLLAAAFWGEPSQRLALIGVTGT 118

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   +I    +   T    +     +                 +         D  
Sbjct: 119 NGKTTTTHLIEHLAATAGTPAA-LFGTLENRWPGYAVTAQHTTAFADLLQAQLAQAADAG 177

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I  + +S     +      R   AV T +   HL     +E   +AKA +F       
Sbjct: 178 ARIGAMEVSSHALDQQRVAGCRFAGAVFTNLTQDHLDYHPSMEAYFAAKASLFAAPLLLE 237

Query: 222 TIFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           +   N   +  +      +  LG +   S  +  +A  ++   +  S      +     +
Sbjct: 238 SATPNAVVNGDDPWGAQLARQLGERCWTSSLEDPSAHLRIDSLEMDSSGVRGRLVTPLGA 297

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G     N+L  +G ++     +   ++ L+ F    GR +R      +    
Sbjct: 298 GHFRSPLLGRFNLMNLLQAVGALAQQGLPLPMLLEGLASFRGVPGRMERVLAGGREDQPA 357

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ +  +          + L    P   GR I V G     G             ++   
Sbjct: 358 VLVDYAHTPDG----LENALRASRPFTRGRLICVFG----CGGDRDRGKRPQMGAIAARL 409

Query: 401 ISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +            +   +P    +              +     D+V++  
Sbjct: 410 ADRVVVTSDNPRTEDPQRILDDVVAGIPAGTELEVEVDRARAIAAAIAGAGPTDLVLIAG 469

Query: 450 KS 451
           K 
Sbjct: 470 KG 471


>gi|330832625|ref|YP_004401450.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
 gi|329306848|gb|AEB81264.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis ST3]
          Length = 481

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 70/487 (14%), Positives = 146/487 (29%), Gaps = 70/487 (14%)

Query: 4   LWTFHDLLQAIQG-----------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           + T   +L+ ++             +         + +S DSR+++P   FFA KG  + 
Sbjct: 1   MITIERVLEILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPTTLFFA-KGLAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATI 110
             +F+  A++ G    V   D       + IP   V D+  A++ +A+      + +  +
Sbjct: 60  -KEFLEKAIEAGLAFYVSEIDY-----EVDIPAIIVHDIKQAMSLIAMEFHGHPQKQLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT------------LARMPV 158
           +A TG+ GKTT        L    K            G                 A M  
Sbjct: 114 LAFTGTKGKTTAAYFAFNILKQSHKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAE 173

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIF 214
            V  G+  L M  S    +    + +   + V   I+P H+        E+    K  + 
Sbjct: 174 AVKNGMSHLIMEVSSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLM 233

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +       + +N     FE++K +  +          +++ +      +    + +    
Sbjct: 234 DNSR---AVIVNAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSAGFDFTATGKLAGHYD 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                                    +           +     +        G+      
Sbjct: 291 IQLIGGFNQE-------------NAIAAGLACLRLGASLEDIHTGIAQTNVPGRMEVLTQ 337

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G    +D ++N +         ++  +  H  G+   +LG     GE  +    D   
Sbjct: 338 QNGAKVFVDYAHNGDS-----VKKLIDVVLEHQTGKVFLILGAPGNKGESRRK---DFGL 389

Query: 395 VLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVD-GDV 446
           +L+ Y    V L+          A+ + +   +    ++    +       S      D 
Sbjct: 390 LLNDYPQIEVILTADDPNREDPAAIAEQIRAHMTRPSNFILDREEAIRTAMSQTSSTKDA 449

Query: 447 VVV--KS 451
           V++  K 
Sbjct: 450 VIIAGKG 456


>gi|6634685|emb|CAB64536.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA   + +
Sbjct: 62 GAAATLSD 69


>gi|258546147|ref|ZP_05706381.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
 gi|258518572|gb|EEV87431.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Cardiobacterium hominis ATCC 15826]
          Length = 483

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 76/477 (15%), Positives = 143/477 (29%), Gaps = 47/477 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MNP    +DLL+              +  I+ DSR++ PQ  + A +G  +   DF    
Sbjct: 1   MNPPKKLNDLLKG----LTAATADRDIAAIATDSRALTPQTLWLAARGISHHALDFYNPE 56

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVG 118
           +       +      A+  + +      + +   L ++A            +I +TG+ G
Sbjct: 57  LH---PAAIAYEPPYANPPADA---IACEQLGAHLGEIAARFYDHPARALKLIGVTGTDG 110

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYN------NHIGVPLTLARMPVDVDFGIFE---LGM 169
           K++    L  A           G  +      +    PL + +          E   + +
Sbjct: 111 KSSLVHFLAQATGGAMLGTIGYGKLDALEPASHTTPDPLRVQQYLARFRDAGIETVAMEV 170

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S     +     V  HI V T ++  HL     +E+   AKA +F        I ++   
Sbjct: 171 SSHALAQGRVAAVEYHIGVFTNLSRDHLDYHRDMEDYFLAKASLFARPLPVAVINIDDAH 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA----DFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               L + + H        S     +       + R      +     ++ + + + +  
Sbjct: 231 GRRLLDENRVHPKTRVIAVSSQNHAHPRAALTLRARDIVLSPDGIAYTLETEAEQVAIQS 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+L T   +  L          L+  H   GR +R               +
Sbjct: 291 GLLARFNVDNLLNTAACLLALGTPFAAIPAKLAALHGVPGRAERIGLGNGAAAIIDYAHT 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
             A         ++L  +  H  G+   V G     G         L    +      V 
Sbjct: 351 PAA-------LANILQGVRAHVPGKLWCVFG----CGGDRDRGKRPLMAQAAEQYADAVV 399

Query: 406 LSGFH------VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +         + D+L    H          +    F+   L  GD VV+  K 
Sbjct: 400 ITDDNPRTENPADIIADSLRGMGHREKAWIKRPREEAIRFVLPQLEAGDAVVIAGKG 456


>gi|6634625|emb|CAB64504.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634628|emb|CAB64506.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634631|emb|CAB64508.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634637|emb|CAB64512.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 81.4 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|162148956|ref|YP_001603417.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545291|ref|YP_002277520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787533|emb|CAP57129.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelateligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532968|gb|ACI52905.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 487

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 87/470 (18%), Positives = 144/470 (30%), Gaps = 40/470 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L A  G S        + G++ DSR + P   F AI G   DG       +     
Sbjct: 5   LSQVLAA-AGLSAPPGADPAITGVTADSRRVTPGMLFVAIPGTRADG----SAFIPAAIA 59

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
                        +  +PV GVD+   AL  LA          ++A+TG+ GKT+T + L
Sbjct: 60  AGAAAIVAPRGTPAPGVPVIGVDEPRRALALLAAFLAGAQPDHVVAVTGTNGKTSTVDFL 119

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMS 170
                   +  A IG+      + L      +     +                  +  S
Sbjct: 120 RQIWGHQHRRAASIGTLGVIADIDLPDCGPVLTTPDSVGLATLLAAMARGGVTDVAIEAS 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +R   A  T +   HL     ++   +AK  +F+ L     +     D 
Sbjct: 180 SHGLDQHRLDGLRLSAAGFTNLTRDHLDYHGTLDAYRAAKLRLFDTLLPPDGLMAANADM 239

Query: 231 FFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               L A +  A                 +L       E   + +   G + ++V    G
Sbjct: 240 DTATLDALRDIAARRGLDLRLVGEAGDAIRLLGSTPLPEGQHLRIASGGVARDIVLALPG 299

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              A N L+   + +     +  AI  L       GR +R     N      +D ++  +
Sbjct: 300 RFQADNALLAAALAAPGADGLARAIDLLPALRGVRGRMERAALLPNGAAA-YVDYAHTPD 358

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             +      +L  + PH  GR IAV G     G         L    +        ++  
Sbjct: 359 ALA-----RLLDALRPHASGRLIAVFGA----GGDRDRGKRPLMGQEATRRADIAIVTDD 409

Query: 409 ----FHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    ++ + L  +                 S L  GDV+VV  K 
Sbjct: 410 NPRTEDPAFIRGEVLAGAPGAIEIGDRARAIAEGLSMLRAGDVLVVAGKG 459


>gi|6634667|emb|CAB64532.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 81.1 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ QA+     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQAVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + +  
Sbjct: 62 GAAVTLSE 69


>gi|167564204|ref|ZP_02357120.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis EO147]
          Length = 514

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 77/483 (15%), Positives = 155/483 (32%), Gaps = 55/483 (11%)

Query: 8   HDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAV 61
             +  A+   + H            +  D+RS+   +AF A      DG D   FI  A+
Sbjct: 12  QQIAAALAWLRAHVASGAQ------LHADTRSLQAGDAFIAYA---VDGADNRPFIADAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            +GA  V+   +  A+ G        V  +     ++A             + +TG+ GK
Sbjct: 63  ARGAAAVLYQPEGSAADGLEPATSLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------- 163
           T+  + +  AL+++ +  A IG+  +  G+P  L                          
Sbjct: 123 TSCTQWIAAALTALHQPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQ 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S     +   +     +AV T +   HL     +E   +AK ++F        +
Sbjct: 181 AVAMEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRLAV 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGK 279
               D +   LL   +  +         + + +D        K +  +  +   +     
Sbjct: 241 VNRDDPAGRRLLANLAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWG 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +V    +G     N+L  LG +       D A+ A+       GR +R    L     
Sbjct: 301 DADVEVGTLGTFNVSNLLAVLGTLLAADVPFDAALAAIEKLESVNGRMERLGGRLQNDEP 360

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P +++  +  L  I+    G  + + G     G    +    L   ++  
Sbjct: 361 LVVVD-YAHTPDALEKTLDALRPIARARGGELVCMFG----CGGDRDATKRPLMGAIAER 415

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +  +         +   +  +      E      L         DVV++ 
Sbjct: 416 LADKVVVTSDNPRSEDPQKIIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLA 475

Query: 450 -KS 451
            K 
Sbjct: 476 GKG 478


>gi|189502202|ref|YP_001957919.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497643|gb|ACE06190.1| hypothetical protein Aasi_0816 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 450

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 129/419 (30%), Gaps = 56/419 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-------SKATIIAITGSVGKTT 121
           + +  + +      I +        AL + ++            +KA++IAITGS GK+T
Sbjct: 62  IADEVIKSPGIPNHIAII------QALQEASIPIIDEVEFASRYTKASLIAITGSNGKST 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  +    L +             +IG       +  + ++ + EL    L         
Sbjct: 116 TTHLAYHLLKAGGLNV----GIAGNIGTSFARKVLLEEHNYYVLELSSFQL----EHLQT 167

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +  IA I  I P HL  +        A+    +   +++   I+   D +  E L  ++
Sbjct: 168 FKADIACILNITPDHLDRYDNQLNNYIAAKFRILRNMIKEGYFIYNQDDTNIREYLVKQT 227

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L      S  +S +    +                  +        +G H   N +  
Sbjct: 228 TNLPQLYPISLTQSTHHGAYVENNHLHFVG----DNYNFQLPTQTLPLLGKHNIYNTMAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + I S+L     + +  L  F     R        N    +  ++S   N  S   A+  
Sbjct: 284 ISIASLLGLSYASILDGLRTFKGLPHRM---EWIANVNQVSFYNDSKATNVESAAVALES 340

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +       G            G    + + ++ + +   ++  +   G     +  A  
Sbjct: 341 FTSPIIWIAG------------GYDKGNDY-NVLKPIVKNSVKALICLGKDNQTICKAFK 387

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
             +I ++ ++ M        +     D+V++    +S             F   +  LL
Sbjct: 388 ESNIPIYETQVMQEAVSLAYTLAKPQDIVLLSPACASFDLFKNFEDRGEQFRYAVQQLL 446


>gi|10566744|dbj|BAB15946.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate [Corynebacterium
           glutamicum]
          Length = 555

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 79/470 (16%), Positives = 137/470 (29%), Gaps = 37/470 (7%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLV 68
           L Q +  H++G   +  +  I +DS S+      F A+ G    G  F        A  +
Sbjct: 56  LCQGVPAHAVG---EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAI 112

Query: 69  VVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKE 124
           + +   +  +       P+  VDDV   L   + +         T+I +TG+ GKTTT  
Sbjct: 113 LTDAAGLEVLNEAGETRPIIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSY 172

Query: 125 MLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMS 170
           +L   L         IG+    I              P   A      D G+    + +S
Sbjct: 173 LLEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVS 232

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                          +A  T ++  HL     +++   AKA  F                
Sbjct: 233 SHALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVD 292

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                +  S A  ++T+ + G+  +             QS+       +S +V     G 
Sbjct: 293 DSWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGA 352

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N  +         A                  G+  R    Q F  ++D ++    
Sbjct: 353 FNVANATL----AFAAAAPWVLMATFARGMSKVAVPGRMERIDEGQDFLAVVDYAHKPAA 408

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +              G G R     D  + G +    H   +   +  N+  V  +G  
Sbjct: 409 VAAVLDTLRTQIDGRLGSGYRCWWRRDSTKRGPMGSCPHRSGSSYCTDANLVRV--AGTI 466

Query: 411 VLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             A+     +        + V            +      GD +VV  K 
Sbjct: 467 RAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 516


>gi|270159082|ref|ZP_06187738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|289166082|ref|YP_003456220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
 gi|269987421|gb|EEZ93676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae D-4968]
 gi|288859255|emb|CBJ13189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           longbeachae NSW150]
          Length = 484

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 127/414 (30%), Gaps = 66/414 (15%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-IHAPVIAITGTNGKSTVTTLVGEMAKAAGYKV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P  A I  + P HL     +E    AK  I
Sbjct: 148 LNDEHQYDLWVLELSSFQLD----LTYSLEPIAATILNVTPDHLDRHHTMEAYIQAKQRI 203

Query: 214 FEGLEKTGTIFLNYD-------------------------------DSFFELLKAKSHAL 242
           +           ++                                 +  E  K + H  
Sbjct: 204 YHKARVALFNRDDFYTVPMTSSHDDAKISQELSTNKTSSILREPLSHACSEREKEEIHLR 263

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G     SFGK    D   +       Q       +G +  +    +      N    L  
Sbjct: 264 GNVNRISFGK----DAPEKNNWGLINQENKIYLAKGHTCFLPVESVLIKGVHNWFNALAA 319

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            ++      T    + V     G   R +          I++S   N  +    IS ++ 
Sbjct: 320 CALADIAGITQQHIIEVLTTFTGLPHRCQWVRTLDGVDWINDSKGTNIGAT---ISAING 376

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
           I    +G+ + + G   + G   +     +A+ +       + L G     ++ AL   +
Sbjct: 377 IGGSMQGKIVLIAGGQGK-GADFKELTQPIADFVRS-----IVLIGEDADKIEAALANVV 430

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            +  + ++D      +     GDVV++    +S             F  L+N L
Sbjct: 431 PISRASSLDNAVEVAKLQAKPGDVVLLSPACASLDMFRDFNHRGEAFASLVNGL 484


>gi|332362287|gb|EGJ40087.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1056]
          Length = 481

 Score = 81.1 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 82/489 (16%), Positives = 153/489 (31%), Gaps = 71/489 (14%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVSAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANGRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     F+++K +  ++      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNNGMDHFQIVKEQVASMEHDFYGAGSSNTIIDSQAFSFEAAGKLAGR 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKIFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREG 447

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 448 DAVILAGKG 456


>gi|257877011|ref|ZP_05656664.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
 gi|257811177|gb|EEV39997.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC20]
          Length = 506

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 127/479 (26%), Gaps = 55/479 (11%)

Query: 7   FHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +++            +       +S DSR+      FF  KG  +    ++  A+ +G
Sbjct: 21  LKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAIDQG 78

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
               +  T               V D+   +  +A A     + +   I ITG+ GKT+ 
Sbjct: 79  IQCYISETPYDNFATYG----IIVTDIRETMAVIAQAFYGHPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------- 169
                  L+          S   +     T     +     +    M             
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
              S           +   I     I+P H+        ++    K E+    ++     
Sbjct: 195 MEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRNSKQMILNR 254

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +        L  ++  +      ++G+S                      +   S E  
Sbjct: 255 QSDHYH----LLRETCEVHQVPYITYGRSDADYVVQEGTDLKGFALSAASDVLQVSGEYQ 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N    +    +  A  +      +               L +    ++  
Sbjct: 311 LGILGSFNHENAAAAILAACLAGASRED-----AQKVLPTVIIPGRMIVLEKENGAVMIV 365

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S ++   +  Q+ P  EGR + V G     G  +QS   D+   L  Y    V
Sbjct: 366 DYAHNYLSFQSLSELARQLRP--EGRLLFVTGSA---GGKAQSRRADMGRALGEY-ADKV 419

Query: 405 WLSGFHVL----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +L+                        + + +            +     D+V++  K 
Sbjct: 420 YLTSDDPDFEEADAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIAEADSKDIVIIAGKG 478


>gi|227497585|ref|ZP_03927808.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
 gi|226832954|gb|EEH65337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Actinomyces urogenitalis DSM 15434]
          Length = 549

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 90/493 (18%), Positives = 158/493 (32%), Gaps = 58/493 (11%)

Query: 7   FHDLLQAIQGHSIGIVP----QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             DL   +   + G       Q  ++G+S+DS  +AP E F A+ G    G +F   AV 
Sbjct: 22  LADLAHTLSLEAAGDPAADLGQVLIHGVSVDSGDVAPGELFVALPGFRRHGAEFAAQAVA 81

Query: 63  KGAGLVVVNTDMVASIGSL--SIPVFGVDDVLGALNKLAV--AARLRSKATIIAITGSVG 118
            GA  V+ + D    +G+    +PV    D    +  LA        +  T  A+TG+ G
Sbjct: 82  GGAVAVLTDADGATRLGASLGQVPVLTHPDPRAVVGPLAAEVYHHPATHLTTTAVTGTNG 141

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVDVDFGIFE 166
           KTTT   L   L++        G+    +G             P+    M + V+ G+  
Sbjct: 142 KTTTTYFLQSILAAHLGQCMIAGTVELSVGTQSVESPRTTVEAPVLQRMMALAVEEGVKA 201

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             L  S    +          +A  T +   HL     +EE   AKA +F   E      
Sbjct: 202 ASLEASSHAIVLHRLGGTVVDVAGFTNLQRDHLDFHHTMEEYLEAKARLFT-PEHARRAV 260

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD +   L  +    G   +         D +          S ++  +   +    
Sbjct: 261 ICVDDRWGAALAERVADRGAVPVDRVRAYPAQDSEDPAQGAQWWVSQVKASMTQAATTFT 320

Query: 285 HHGIGYHMAQNMLM------------TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            HG      + +               L +        DTA++AL+  H   GR +R   
Sbjct: 321 LHGPDGEQIEALCPLPGLVNVQNAALALVMALRAGVAQDTAVQALAHAHNIPGRMQRISQ 380

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +    ++D ++      +      L  +     GR I V G               L
Sbjct: 381 RDGRRGTCIVDFAHTPEAMDL-----ALKAVREITPGRLIVVFGSDG----DRDQGKRPL 431

Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHY--SETMDG-------LFLFIQ 438
              ++      + ++  +  +     ++DA+   +       E ++              
Sbjct: 432 LGQVAARLADVLVVTDENPRSEDPQLIRDAVLAGVRSVRPGLEDVEEITTWRGDAVRRGV 491

Query: 439 SSLVDGDVVVVKS 451
                 D V+V  
Sbjct: 492 ELCGPQDTVIVTG 504


>gi|284046367|ref|YP_003396707.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
 gi|283950588|gb|ADB53332.1| Mur ligase middle domain protein [Conexibacter woesei DSM 14684]
          Length = 552

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 80/407 (19%), Positives = 132/407 (32%), Gaps = 29/407 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L++V   ++  + +  +      D    L   A       +  ++ ITGS GKTTTK
Sbjct: 145 GAVLLLVAPWLLGGVVNRMLRPVQQADNRRFLRS-AEQRLRDVRPLVVGITGSYGKTTTK 203

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +T  L  +   Y    S+N+ +GV   +   +       + E+G    G+++ L  LV
Sbjct: 204 ACVTEVLELLGPAYPTPASFNSTLGVVRAINEGLQPQHQSFVVEMGAYRRGDVQELCDLV 263

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+T I PAHL  F  ++    AK E+ + L   G      DD     +       
Sbjct: 264 HPRIGVLTAIGPAHLERFGSLDVTEQAKGELADALPAEGLFVTRADDERTLRVAR---TR 320

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                  F  + + D  +       E       L  ++            A         
Sbjct: 321 SAARALLFAPAPHPDADVWAEDVRLENGRTHFTLVARASGDGGASGDGGAAAGEQRADVR 380

Query: 303 VSILTADVDTAIK----------------ALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             +L       +                 A ++        +            +ID+SY
Sbjct: 381 ARLLGDHNVANLLAAAAVGIGHGLALADVARALGRVTPPDHRLAPIVNRAAGIVVIDDSY 440

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           NANP       + L  +  H   RR+ V   M E+G   Q  +  L E+ +        L
Sbjct: 441 NANPEGA---AAALGVLRDHPATRRLLVTPGMVELGAREQEENRRLGELAAGV-ADIAIL 496

Query: 407 SGFH----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         ++ A      +            +      GDVV+ 
Sbjct: 497 IGARGEDVAAGMRAAGAPEERILVLPDGPAAHAKVAELTRSGDVVLF 543


>gi|327490129|gb|EGF21917.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1058]
 gi|332367212|gb|EGJ44947.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1059]
          Length = 481

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 152/476 (31%), Gaps = 65/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++ LA+        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
                 LS   +            G                + +    +  +    I E+
Sbjct: 127 YFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANNRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    ++   + +   + V   I+P H+        E+    K  + +       + +
Sbjct: 187 --SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D   F+++K +  ++      +   +   D Q   ++   + +               
Sbjct: 242 NSDMDHFQIVKEQVASMEHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDIQLIGHFNQE- 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         +           +              G+        G    +D +
Sbjct: 301 ------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFVDYA 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N    S     ++LS +  H +G+ I +LG     GE  +    D   +L+ +    V 
Sbjct: 349 HNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVI 400

Query: 406 LSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
           L+         LA+ + +    S  V      +       S    +GD V++  K 
Sbjct: 401 LTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKG 456


>gi|324993698|gb|EGC25617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK405]
 gi|324994989|gb|EGC26902.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK678]
 gi|327462968|gb|EGF09289.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1]
 gi|327474571|gb|EGF19976.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK408]
          Length = 481

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 152/476 (31%), Gaps = 65/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++ LA+        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
                 LS   +            G                + +    +  +    I E+
Sbjct: 127 YFAYQTLSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANNRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    ++   + +   + V   I+P H+        E+    K  + +       + +
Sbjct: 187 --SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D   F+++K +  ++      +   +   D Q   ++   + +               
Sbjct: 242 NSDMDHFQIVKEQVASMEHDFYGAGSSNTIIDSQAFSFEVAGKLAGRYDIQLIGHFNQE- 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         +           +              G+        G    +D +
Sbjct: 301 ------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFVDYA 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N    S     ++LS +  H +G+ I +LG     GE  +    D   +L+ +    V 
Sbjct: 349 HNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVI 400

Query: 406 LSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
           L+         LA+ + +    S  V      +       S    +GD V++  K 
Sbjct: 401 LTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKG 456


>gi|332522134|ref|ZP_08398386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313398|gb|EGJ26383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 485

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 71/457 (15%), Positives = 146/457 (31%), Gaps = 67/457 (14%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FF +KG ++ G +++  A+ +G    +   D       + IP  
Sbjct: 35  FSKLSYDSRDADNQTLFF-VKGANFKG-EYLQSALNQGLQAYISEVDY-----EVGIPAI 87

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+D+  A++ +A+A     + K  ++A TG+ GKTT+       L    KT        
Sbjct: 88  IVNDIKHAMSIIAMAFYDNPQDKLKLLAFTGTKGKTTSAYFAYHILKQSHKTAMLSTMNT 147

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G     +++                   +   I E+  S    +    + +   + V
Sbjct: 148 TLDGQTFFKSQLTTPESLDLFKMMAECVSNGMTHLIMEV--SSQAYLVGRVYGLTFDVGV 205

Query: 189 ITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E       + +N D   F +LK +        
Sbjct: 206 FLNISPDHIGPIEHPNFEDYFYHKRLLMENSR---AVIINSDMDHFHILKEQVAKQDHDF 262

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                 +   D Q   +K   + +     L                       +      
Sbjct: 263 YGQASDNSITDSQAFTFKATGKLAGNYRTLLIGRFNQE-------------NAIAAGLAC 309

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                +              G+        G    +D ++N +         ++S +  H
Sbjct: 310 LRLGASHEDIQKGIAQTTVPGRMEVLNHPCGAKVFVDYAHNGDSLE-----KLVSVVEEH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDA 417
            +G+   ++G     GE  ++   D A+V++ +    V L+               +   
Sbjct: 365 QKGQITLIIGSTGNKGESRRA---DFAKVINNHPNLSVILTADDPNFEDPQTISEEIASY 421

Query: 418 LPRSIHVHYSETMDGLFLF-IQSSLVDGDVVVV--KS 451
           + R + +      +      +QS   + D +++  K 
Sbjct: 422 VSRQLTIEV--EREQAIKLGLQSCQEEEDALIIAGKG 456


>gi|269956079|ref|YP_003325868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304760|gb|ACZ30310.1| UDP-N-acetylmuramyl-tripeptide synthetase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 532

 Score = 80.7 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 84/490 (17%), Positives = 148/490 (30%), Gaps = 48/490 (9%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL         G       V  ++ D+R +A  + F A+ G    G  F   AV +GA
Sbjct: 18  VRDLAHTFDLRVAGAAGRDQAVTSVASDNRVVAAGDLFVALPGARAHGAQFAADAVARGA 77

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
             V+ + D  A +G L++PV    +    L  +A           T  A+TG+ GKTTT 
Sbjct: 78  AAVLTDDDGAALLGDLAVPVLVSPEPRAILGHVAAWVYGSPAEHLTTFAVTGTNGKTTTT 137

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG--------------VPLTLARMPVDVDFGIFELGM 169
             L   L ++  T   IG+     G                  L     +       + +
Sbjct: 138 YQLDHLLRALGFTSGLIGTVEMRAGDRVLPSKLTTPEAADLQALLAAMHEDGVRTLAMEV 197

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           VR  +A  T ++  HL     ++    AKA +F        + +  D 
Sbjct: 198 SSHALALHRVDGVRYGVAGFTNLSQDHLDFHGDMQSYFEAKALLFTPEHARRGVVVVDDA 257

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               +  A++  + + T+ +      AD+ +   +     +   V  +          + 
Sbjct: 258 WGLRM--AEAAQVPVATLRTVPDGPAADWTVSDVEPHGTGTAFTVTHKDGRTLRTSTTLP 315

Query: 290 YHMAQ-NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID--ESY 346
            H    N  + L +V    A +    +AL+      G        +  G           
Sbjct: 316 GHFNVANAALALVMVLEGGAHLTDVAEALAASGGLAGVVPGRMEVIAAGTGAQAALPRVV 375

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                + +A    L+ + P   GR + V G     G+        +           V  
Sbjct: 376 VDFAHNTEALELALAALRPTTPGRLVVVFGA---TGDRDTGKRPAMGAAAVEGADVVVVT 432

Query: 407 S----GFHVLALKDAL------------------PRSIHVHYSETMDGLFLFIQSSLVDG 444
                G    A++  +                   R++ V      D       +    G
Sbjct: 433 DDDPHGEDPAAVRAEVLAGARAAAAAAAGTGTADARTVDVREVAPRDLAIRTAIAEAGAG 492

Query: 445 DVVVVKSSNS 454
           D V++     
Sbjct: 493 DTVLIAG-RG 501


>gi|77917785|ref|YP_355600.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
 gi|77543868|gb|ABA87430.1| UDP-N-acetylmuramyl pentapeptide synthase [Pelobacter carbinolicus
           DSM 2380]
          Length = 419

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 133/359 (37%), Gaps = 16/359 (4%)

Query: 99  AVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           A   R R   K  I+A+TGS GKTT    L   L      YA +    +       + +M
Sbjct: 27  ARWHRFRYLRKTKILAVTGSCGKTTATYFLGRILGECGPCYAGVHRNTSRAIY-KNMRKM 85

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + + E+G+   G++      + P+I ++TTI   H ++F   E  A+ K  +   
Sbjct: 86  RTSYRYLVQEMGVGFPGDMAKNIRALPPYIGIVTTIGLDHYTSFRNREGTAAEKGTLIAA 145

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L  +GT  LN DD     + +++ A     I ++G S++ D +      CS+        
Sbjct: 146 LPPSGTAVLNADDPHVMAMASQTQAS----ILTYGCSEHVDVR--GSAICSDWPQRLSLN 199

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  V    G      +   L  ++   A   +  +  +  H  E    R     + 
Sbjct: 200 VTYGDRSVRVETGLFGDLLVTSLLAAIAGALAAGVSLAQCAASLHGVESFPARLSIHRSP 259

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               +I++++ A      +    +  +      R+  VLG   + G      +  +A++ 
Sbjct: 260 QGSWMINDTFKA---PFWSVERTVGLMKNAVAPRKTVVLGVFSDTGGSGSRKYRAMAKLA 316

Query: 397 SLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS 452
                  V   G +   ++       +  +   +  +  + F+  + +  ++V++K  S
Sbjct: 317 LEV-ADRVVFVGPNAAHVRKIQTAELADRLFTFDGFETAYRFLADTTIQNELVLLKSGS 374


>gi|152967148|ref|YP_001362932.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
 gi|151361665|gb|ABS04668.1| UDP-N-acetylmuramyl-tripeptide synthetase [Kineococcus
           radiotolerans SRS30216]
          Length = 537

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 21/223 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGF-----VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
             D+ Q +        P        V G+++DSR + P + + A+ G +  G  F   A 
Sbjct: 18  LSDVAQVLGTSVAAGAPTPAPPGTPVTGVTLDSRRVRPGDLYAALPGANVHGARFAAQAA 77

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             GA   + +      + +  +P   VDD    L  LA     R     T + +TG+ GK
Sbjct: 78  ASGAVAALTDPAGADLVAAAGLPALVVDDPRAVLGDLAARIHGRPGDVLTTVGVTGTNGK 137

Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPVDVDFGI--F 165
           TTT  ++   L S   T               + S       P   A +   V  G+   
Sbjct: 138 TTTAYLVESLLRSAGWTTGLLGTVETRIAGERVDSVRTTPEAPDLHALLARMVAAGVRGC 197

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            L +S    ++     +   +A+ T ++  HL     +EE  +
Sbjct: 198 ALEVSSHALVQHRVDGLVLDVALFTNLSQDHLDFHGSMEEYFA 240


>gi|254495864|ref|ZP_05108774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
 gi|254354900|gb|EET13525.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           drancourtii LLAP12]
          Length = 444

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 124/357 (34%), Gaps = 34/357 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG+P+   
Sbjct: 93  YGDIECLARE-IHAPVIAITGTNGKSTVTTLVGEMAKAAGYNV----AVAGNIGMPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     L     P +A I  ++P HL     ++    AK  +
Sbjct: 148 LEDEHQYDLWVLELSSFQLDLTSSLA----PVVATILNVSPDHLDRHHSMDAYIRAKQRV 203

Query: 214 FEGLEKTGTIFLNYDD-SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +       +       ++++A S          +G     D         +  +  
Sbjct: 204 YHHAQVVLFNRDDAYTEPAGQVIRAISFGNNQPATEDWGLINQEDK-----IYLAHGNSC 258

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +  +   ++ VH+ +    A  +    GI       V T    LS            + 
Sbjct: 259 FLATESVLIKGVHNWLNALAACALADAAGIPRQYIISVLTTFSGLSHR---------CQW 309

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  +    IS ++ I    +GR + + G   +  + S     +L
Sbjct: 310 VRTLDGVEWINDSKGTNIGAT---ISAINGIGGSMQGRIVLIAGGQGKGADFS-----EL 361

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A+ ++ + +  + L G     +  AL   + +  + ++D      ++    GDVV++
Sbjct: 362 AQPIADF-VRSIVLIGEDADKIAAALADVVPITRASSLDNAVAVAKTQAKPGDVVLL 417


>gi|325568267|ref|ZP_08144634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
 gi|325158036|gb|EGC70189.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus casseliflavus ATCC 12755]
          Length = 506

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 64/479 (13%), Positives = 130/479 (27%), Gaps = 55/479 (11%)

Query: 7   FHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +++            +       +S DSR+      FF  KG  +    ++  A+ +G
Sbjct: 21  LKEIITPTDWVYTVPQEMTDIAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAIDQG 78

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
               +  T               V D+   +  +A A     + +   I ITG+ GKT+ 
Sbjct: 79  IQCYISETPYDNFATYG----IIVTDIRETMAVIAQAFYGNPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------- 169
                  L+          S   +     T     +     +    M             
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
              S           +   I     I+P H+        ++    K E+    ++     
Sbjct: 195 MEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRNSKQMILNR 254

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +        L  ++  +      ++G+S             S        +   S E  
Sbjct: 255 QSDHYH----LLRETCEVHQVPYITYGRSDADYVVQEGMDLKSFALTAASDVLQVSGEYQ 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N    +    +  A  +      +               L +    ++  
Sbjct: 311 LGILGSFNHENAAAAILAACLAGASRED-----AQKVLPTVIIPGRMIVLEKENGAVMIV 365

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S ++   +  Q+ P  +GR + V G     G  +QS   D+   L  Y    V
Sbjct: 366 DYAHNYLSFQSLSELARQLRP--DGRLLFVTGSA---GGKAQSRRADMGRALGEY-ADKV 419

Query: 405 WLSGFHVLALKDAL----------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +L+       + A              + + +            +     D+V++  K 
Sbjct: 420 YLTSDDPDFEEAAAIAKEIADAITNPEVAIIHEMDRAQAVKLAIAEADGRDIVIIAGKG 478


>gi|183221146|ref|YP_001839142.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911237|ref|YP_001962792.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167775913|gb|ABZ94214.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779568|gb|ABZ97866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 508

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 78/490 (15%), Positives = 143/490 (29%), Gaps = 56/490 (11%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI---KGPHYDGHDFILHA 60
               ++++ I +   I       V  I  DSR + P + F  +   K        ++  A
Sbjct: 1   MKLTEIIKKIPELKLIKGDGDLDVGYIWADSRKLKPNDVFV-LPEDKAETI--ESYLQMA 57

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFG-VDDVLGAL-NKLAVAARLRS--KATIIAITGS 116
             KG  +V+V+   +        P     +D LG +  K+A         K  II ITG+
Sbjct: 58  YDKGVKVVLVSKRNLKLKNLDLFPTILESEDALGDVHGKMASQLLGNPSKKLKIIGITGT 117

Query: 117 VGKTTTKEMLTIALSSIKKT-------YACIGSYNNHIGVPLTLA-------RMPVDVDF 162
            GKT+   +L      +KK           I       G     A       R  +D   
Sbjct: 118 NGKTSLTFILFHIAKKLKKKVALIGTVQIQILDRILESGYTTPDASSLNLLLREMLDEGV 177

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S  G        +    A  T +   HL     +E+   +K +IF+ LE++  
Sbjct: 178 EYVFMEISSHGLKLGRVAGIEITCAGFTNLTQDHLDFHESMEDYFESKFKIFQLLEQSSV 237

Query: 223 IFLNY--------DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                         D   + ++       I  +   G+   ++ +L            E 
Sbjct: 238 KNKFGLVAGDVSFGDRMIQRIRESKLKTPIYILGKSGEFHYSNTKLSLLGSEYRFHKKEK 297

Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            L       +  + +G     N    + I   L    D  + A+       GR   ++  
Sbjct: 298 NLPFIEVRSIRTNLLGNFNVFNTAFAMSIAYELGFPWDEVVTAIEEIPTVPGR---FQVI 354

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  +    Y   P +++  +    +I P         L  +   G           
Sbjct: 355 PYPDKTRIAVVDYAHTPDALENILKSCVEIRPKQ-------LICLFGCGGDRDRTKRPQM 407

Query: 394 EVLSLYNISHVWLSGFHVL---------ALKDALPRS-IHVHYSETMDGLFLFIQSSLVD 443
             ++      V+L+  +            ++    R                   S L  
Sbjct: 408 AKIAETLADFVFLTSDNPRTEDPESILDEIESGFSRGFKRYEKITDRRVAIQRAVSLLEK 467

Query: 444 GDVVVV--KS 451
             ++VV  K 
Sbjct: 468 DGILVVAGKG 477


>gi|307720865|ref|YP_003892005.1| Mur ligase middle domain-containing protein [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978958|gb|ADN08993.1| Mur ligase middle domain protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 481

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 126/348 (36%), Gaps = 30/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVD 161
           R      II ITGS GKT+ K      LS   K YA   S N   G+       +  D +
Sbjct: 155 RSMKDLEIICITGSYGKTSIKNFTAQILSHKFKVYATPRSVNTLGGIIADINNNLSQDTE 214

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E G    G+I  +T  + P   V+  +  AH+  F  ++ I + K EI +  +   
Sbjct: 215 IYVCEAGARQSGDIYEITTFLEPQTVVVGRVGEAHIEYFKSLKNIIATKLEIMQSPK--- 271

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                           ++      T     K      +++      E +  +++L+GK++
Sbjct: 272 --------------LKQAFIHTSVTDEPHEKVTFFGDEIKNIDAGLEGTDFDIELEGKTL 317

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G     N+ + + I        D  I A+    P E R +  +         +
Sbjct: 318 HLHTDILGAFQTMNIAVAVRIAKSFGLSDDEIIDAVKNLEPVEHRLQLIKAGGK----II 373

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+ YN N   M   I + S       GR++ V   + E    S   ++ L E ++    
Sbjct: 374 LDDGYNGNIDGMLEGIRLCSLHK----GRKVIVTPGLVE---SSDELNLKLIEAINKV-F 425

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V ++G     L D      +    +    +   + +    GD+++ 
Sbjct: 426 DIVIVTGSLNAELFDKNLHVKNKIMLKDKSAMVDVLANQTKSGDIILF 473


>gi|328946898|gb|EGG41035.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1087]
          Length = 481

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 83/489 (16%), Positives = 154/489 (31%), Gaps = 71/489 (14%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDCISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -REFLEKAVTAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANGRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N    +F+++K +  +L      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMDYFQIVKEQVASLEHDFYGAGSNNTIKDSQAFSFEAAGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKVFVDYAHNGVSLS-----NLLSVVQEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREG 447

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 448 DAVILAGKG 456


>gi|289443664|ref|ZP_06433408.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416583|gb|EFD13823.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 219

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 36  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 95

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 96  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 155

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           GKTTT  ++   L +  +    IG+    +G
Sbjct: 156 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVG 186


>gi|260201274|ref|ZP_05768765.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 205

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 9/151 (5%)

Query: 7   FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
              L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 22  LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 81

Query: 61  VQKGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA  V+ +   VA I G  ++PV       G L  LA           T+I ITG+ 
Sbjct: 82  IARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTS 141

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           GKTTT  ++   L +  +    IG+    +G
Sbjct: 142 GKTTTTYLVEAGLRAAGRVAGLIGTIGIRVG 172


>gi|30316061|sp|Q8NNN0|MURE_CORGL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|21324933|dbj|BAB99556.1| UDP-N-acetylmuramyl tripeptide synthase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 517

 Score = 80.7 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 83/478 (17%), Positives = 144/478 (30%), Gaps = 52/478 (10%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSI-APQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
            Q +  H++G   +  +  I +DS S+      F A+ G    G  F        A  ++
Sbjct: 16  AQGVPAHAVG---EQAIAAIGLDSSSLPTSDAIFAAVPGTRTHGAQFAGTDNAAKAVAIL 72

Query: 70  VNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEM 125
            +   +  +       PV  VDDV   L   + +         T+I +TG+ GKTTT  +
Sbjct: 73  TDAAGLEVLNEAGETRPVIVVDDVRAVLGAASSSIYGDPSKDFTLIGVTGTSGKTTTSYL 132

Query: 126 LTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMSH 171
           L   L         IG+    I              P   A      D G+    + +S 
Sbjct: 133 LEKGLMEAGHKVGLIGTTGTRIDGEEVPTKLTTPEAPTLQALFARMRDHGVTHVVMEVSS 192

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                         +A  T ++  HL     +++   AKA  F                 
Sbjct: 193 HALSLGRVAGSHFDVAAFTNLSQDHLDFHPTMDDYFDAKALFFRADSPLVADKQVVCVDD 252

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
               +  S A  ++T+ + G+  +             QS+       +S +V     G  
Sbjct: 253 SWGQRMASVAADVQTVSTLGQEADFSATDINVSDSGAQSFKINAPSNQSYQVELALPGAF 312

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N  +     + +  D +   + +S        G+  R    Q F  ++D ++     
Sbjct: 313 NVANATLAFAAAARVGVDGEAFARGMSK---VAVPGRMERIDEGQDFLAVVDYAHKPAAV 369

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +      VL  +    +GR   V+G     G    S        LS      V ++  + 
Sbjct: 370 AA-----VLDTLRTQIDGRLGVVIGA----GGDRDSTKRGPMGQLSAQRADLVIVTDDNP 420

Query: 412 LA-------------LKDALPRSIH-VHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
            +              +     S   V   E          +      GD +VV  K 
Sbjct: 421 RSEVPATIRAAVTAGAQQGASESERPVEVLEIGDRAEAIRVLVEWAQPGDGIVVAGKG 478


>gi|126665248|ref|ZP_01736231.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
 gi|126630618|gb|EBA01233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           sp. ELB17]
          Length = 448

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 113/375 (30%), Gaps = 41/375 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A IIAITGS GKTT   ++               +   +IG P     +     
Sbjct: 103 FAEAADAPIIAITGSNGKTTVTTLVADMARDAGYQV----AVGGNIGTPALDL-LNTGAR 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L        A +  ++  H+  +        AK  IF G     
Sbjct: 158 LYVLELSSFQLETTDELNA----LAATVLNVSDDHMDRYPDKMAYYQAKQRIFRG----- 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                   +  + L        ++ I       N +    +    S   W+   L     
Sbjct: 209 --CQYAIVNLDDALSTPMARNTLRFICFGMNRVNPETFSTRDDSVSGHPWVTWGLDNLIR 266

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N++  LG+       +D+ +     FH    R +  R          
Sbjct: 267 ADELGLVGRHNLSNVMAALGLGKAAGLPMDSMLATARAFHGLPHRCESLRLVNGVE---Y 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +  AA+  L+  +    G+ + + G   +  + S           +  + 
Sbjct: 324 INDSKGTNVGATVAALDSLAPAA----GKIVLIAGGDGKGADFSP------LADPARRHC 373

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     L++ L +    H   ++             GD V++    +S      
Sbjct: 374 RAVVLIGRDAAQLQEVLAQGTATHIENSLADAVASAARLAQPGDRVLLSPACASLDMFRD 433

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 434 YIDRGERFRTLVEAL 448


>gi|6634590|emb|CAB64484.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     + I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + +  
Sbjct: 62 GAAVTLSE 69


>gi|257866935|ref|ZP_05646588.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257873268|ref|ZP_05652921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
 gi|257800991|gb|EEV29921.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC30]
 gi|257807432|gb|EEV36254.1| cytoplasmic peptidoglycan synthetase [Enterococcus casseliflavus
           EC10]
          Length = 506

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 63/479 (13%), Positives = 127/479 (26%), Gaps = 55/479 (11%)

Query: 7   FHDLLQAIQ--GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +++            +       +S DSR+      FF  KG  +    ++  A+ +G
Sbjct: 21  LKEIITPTDWVYTVPQEMTDLAFTSLSYDSRTADAATLFFC-KGASFK-ESYLAAAIDQG 78

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
               +  T               V D+   +  +A A     + +   I ITG+ GKT+ 
Sbjct: 79  IQCYISETPYDNFATYG----IIVTDIRETMAVIAQAFYGHPQEQLVTIGITGTKGKTSC 134

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM------------- 169
                  L+          S   +     T     +     +    M             
Sbjct: 135 AYFARAILAESTGQKVAFFSSEENSVDGKTFNEAVLTTPETLDLYKMMAEAVANGMTHLV 194

Query: 170 ---SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
              S           +   I     I+P H+        ++    K E+    ++     
Sbjct: 195 MEVSSQAYKTKRVAGITFDIGAFLNISPDHIGPVEHPTYDDYLYCKRELIRNSKQMILNR 254

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +        L  ++  +      ++G+S                      +   S E  
Sbjct: 255 QSDHYH----LLRETCEVHQVPYITYGRSDADYVVQEGADLKGFALSAASDVLQVSGEYQ 310

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G    +N    +    +  A  +      +               L +    ++  
Sbjct: 311 LGILGSFNHENAAAAILAACLAGASRED-----AQKVLPTVIIPGRMIVLEKENGAVMIV 365

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  N  S ++   +  Q+ P  EGR + V G     G  +QS   D+   L  Y    V
Sbjct: 366 DYAHNYLSFQSLSELARQLRP--EGRLLFVTGSA---GGKAQSRRADMGRALGEY-ADKV 419

Query: 405 WLSGFHVL----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +L+                        + + +            +     D+V++  K 
Sbjct: 420 YLTSDDPDFEEASAIAKEIAAAITNPEVAIIHEMDRAQAVKSAIADADSKDIVIIAGKG 478


>gi|160897523|ref|YP_001563105.1| Mur ligase middle domain-containing protein [Delftia acidovorans
            SPH-1]
 gi|160363107|gb|ABX34720.1| Mur ligase middle domain protein [Delftia acidovorans SPH-1]
          Length = 1097

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 73/410 (17%), Positives = 138/410 (33%), Gaps = 16/410 (3%)

Query: 65   AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            A  ++ ++     +    +PV  V D+   L  LA AAR R ++ ++A++G VGKT+T  
Sbjct: 671  ASALISSSPQG--LLDHGVPVLHVPDMEEGLRNLAQAARRRIQSPVVAVSGCVGKTSTLG 728

Query: 125  MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            M+   L                 G  L +          + EL    L  +R    L+ P
Sbjct: 729  MMRQCLQDGGDARGDALLSQ---GTALQMINWSEASPCALLELP---LQALRGDLPLIDP 782

Query: 185  HIAVITTIAPAHLSNFSGIE--EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
             I VIT ++  +  +    E    A    E      +     + +      L+  +    
Sbjct: 783  DILVITNLSINNTPHSGESEPSGQAGLPGERKYEALQEVLEAMQHMHKGSALVTDQDIGE 842

Query: 243  G---IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                I+     G            +             G     +   +        L  
Sbjct: 843  NPSVIEHAKRMGLRLITFGPHCNAQVREMGFHNGNLQIGMGSLRLGISLQSDGHHMALNA 902

Query: 300  LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               ++ L A      +  +     +      +         L+D S + +  SM AA S 
Sbjct: 903  QAALAALHALGYAPAQVQASLAHWQPMIGAGQPQFLPSGICLLDHSLSNHLLSMTAAFSQ 962

Query: 360  LSQISPHGEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  ++PH   R I + G   + G+ S  +  + L  ++       V L G  +  L  AL
Sbjct: 963  LQSVAPHVSRRLIVLAG--IQPGQASIDAAQLALEPLVRDAQARRVLLYGEPLRPLAAAL 1020

Query: 419  PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               +HV++ + ++ L   +  +   GD V++    +       + + + F
Sbjct: 1021 GDLLHVNWYDDLNQLICSLLRTTHKGDTVLLAGRATTNLALAADAIRDSF 1070


>gi|330718777|ref|ZP_08313377.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc fallax KCTC
           3537]
          Length = 469

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 70/462 (15%), Positives = 139/462 (30%), Gaps = 63/462 (13%)

Query: 32  IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
            D+R + P   F  +KG +++   ++ +AV  G   +V    +      + IP + V + 
Sbjct: 3   YDTRQVKPNTLFV-VKG-NFNP-KYLENAV--GITGIVTTKPL-----DIDIPQWIVSNT 52

Query: 92  LGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
             AL+ L+     R + K  I AITG+ GKTTT       L    +    + S  + I  
Sbjct: 53  QQALSLLSAEFFDRPQDKLWIGAITGTKGKTTTAYFAYYILKHATQNRTALFSTVDRITG 112

Query: 150 PL------------TLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITT 191
           P                 +  D+   +        + +S    ++   + +   +     
Sbjct: 113 PQASDKKKSDLTTPESYELFKDMRQAVDNGMTHLIMEVSSQAYLKDRVYGLHFDVGTFLN 172

Query: 192 IAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           I+P H+        E+  + K  + +  +                   ++H  G      
Sbjct: 173 ISPDHIGPNEHPTFEDYLAHKLMLLDHSDTIVINDETDHHDEIFSHAKQNHEAGKSLYTY 232

Query: 250 FGKSKNA--------DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               +N         D  + +      +     QL         +  G     N L  L 
Sbjct: 233 SSNRQNQGDYVFISNDSAIHESHFTVSEQHKVEQLSEIIGHYRLNIPGDFNESNALAALM 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I     A     ++ L               +    F        + +         +  
Sbjct: 293 IAGFAGAKHQDMVQGLDEVFIPGRMLSMPIPSHGVAFVDYAHNYASMHAL-------LSF 345

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
             S +  G+ I V+G     G   ++    +   L+      V+L+           + +
Sbjct: 346 AQSKYPTGKVIVVVGSPGNKGVSRRADFGKVIGELA----DVVFLTADDPQYEDPADIAN 401

Query: 417 ALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   I+     VH+            +S  + D+V+V  K 
Sbjct: 402 EIACHINNDHVVVHFEMDRIKAIHAAIASAGEQDIVIVAGKG 443


>gi|6634649|emb|CAB64520.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 80.3 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ QA+     + I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQAVGAKNDVSIFEDIQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|255086996|ref|XP_002505421.1| predicted protein [Micromonas sp. RCC299]
 gi|226520691|gb|ACO66679.1| predicted protein [Micromonas sp. RCC299]
          Length = 462

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 62/448 (13%), Positives = 126/448 (28%), Gaps = 34/448 (7%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              V+GI+ DSR +   + F  I G   DGHDF L AV  GA  +V    +      + +
Sbjct: 1   DVEVSGIANDSRVVLGGDVFVCIVGEKMDGHDFALDAVAAGAVAIVCERPIDG--LGVDV 58

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V     AL +LA A         T + +TG+ GKTT   M+   L +       IG
Sbjct: 59  PQVVVPSARAALPRLAAAFYGNPSASLTTVGVTGASGKTTVTHMVRAILDANDVRCGVIG 118

Query: 142 SYNN---HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH-- 196
           +         VP +           +  +  +                  +         
Sbjct: 119 TTGYSLDDYDVPTSSPDALQ-CQQLMAGMLDNGARATAMEVSSRDLAQGRVDCCDFDVAV 177

Query: 197 ----LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
                 +    +  +   A        T         +                 Y    
Sbjct: 178 FTNLRGDHHEGDAASCRNATAELFRRLTDPERQRAVINLDVSTAEDGEKPFDDAAYFSEA 237

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +  AD  + +      ++ + ++    + + +   +G     N+   +     L   +D 
Sbjct: 238 ASAADVFVERADLSLFETAVTIRTPVGTFDAITGLVGEVNVSNVAAAVAAGIALEIPLDV 297

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + +    P  GR +               ++  A   ++++     +           
Sbjct: 298 IAEGVEAMEPAPGRMELVDEGQPFSVVVDYAQTPEALKRAIESVRKTGA----------N 347

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIH 423
            V+      G+   S   ++  V   Y+   V+++  +            +   L     
Sbjct: 348 NVITVFGCGGDRDASKRAEMGRVADEYS-DIVFVTNDNPRTEDPYKILDDITMKLQNMCR 406

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +             +   + D V++  
Sbjct: 407 RYVIVDRFYAIRAAIAMAGEDDAVLICG 434


>gi|120437105|ref|YP_862791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
 gi|158512450|sp|A0M529|MURD_GRAFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|117579255|emb|CAL67724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gramella forsetii
           KT0803]
          Length = 445

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 116/382 (30%), Gaps = 45/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      S+  +I ITGS GKTT   ++   L               +IG        
Sbjct: 95  EFASWF---SEVPVIGITGSNGKTTVTNLVQHLLKEGGINSGMG----GNIGNSYAKMVA 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               D+ + EL    L  I       +PHIA++T I P HL  +   +E   ++K  I E
Sbjct: 148 EEMHDWFVLELSSFQLDGIEK----FKPHIAILTNITPDHLDRYDYKLENYIASKFRIAE 203

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +      + DD        K+     K  +S  K       +               
Sbjct: 204 NQTEEDYFIYDADDKNITDWLEKNPVRSQKLPFSIEKKIENGAYIENENIV----VTINN 259

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H A+N +    +  +L     T  ++++ F        R    L 
Sbjct: 260 TKFTMPTSELALQGKHNAKNAMAASMVSQLLRIRKQTIRESMASFQGV---EHRLEKVLK 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  +       E   + +LG     G    + + DL  +
Sbjct: 317 INNVLYINDSKATNVNATFYALESM-------ESETVWILG-----GVDKGNVYDDLLPL 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KS 451
           ++   +  +   G     +  A    +      T M             GD V++    +
Sbjct: 365 VNE-KVKAIICLGVDNEKIVSAFGNIVDTMVETTSMSEAVQMAYRLSDKGDNVLLSPACA 423

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +  L
Sbjct: 424 SFDLFENYEDRGRQFKEAVRNL 445


>gi|114777867|ref|ZP_01452798.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
 gi|114551858|gb|EAU54398.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mariprofundus ferrooxydans PV-1]
          Length = 488

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 63/474 (13%), Positives = 132/474 (27%), Gaps = 56/474 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           L + +            + GI  DSR + P  A   +        D++  A ++GA  ++
Sbjct: 2   LAEGLGQLHAESSDDVLIMGICDDSRYVKPGYAMICLPRSRAHVADYVEAAGKQGATAII 61

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTI 128
                V    +  +PV  +  +  A   L    R   ++     ITG+ GKT+   ML  
Sbjct: 62  A----VGVSVTSDLPVLHLASMQQAGLLLRRLFRTEEARTHFYGITGTDGKTSVAWMLRE 117

Query: 129 ALSSIKKTYACIGSY------------------NNHIGVPLTLARMPVDVDFGIFELGMS 170
           AL+  +                           +      +  +     V     E  +S
Sbjct: 118 ALTRYQPKPVWSCGTLGWLRAPDDILDIGNTTPSMLTMHAMLSSANLGGVHSVACE--IS 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             G  +     +  H A+ T +   HL +  G E     KA   +               
Sbjct: 176 SHGIAQERIAGIDFHTAIWTNMGHDHLQDHGGYETYLKTKAGFVQATAAH---------- 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++    HA   +                      EQ    +     +   V      
Sbjct: 226 GGNVVANADHADIREHAPEHACWYGHGLYRDDVDLAWEQELPGLLRLKSAEGEVVIEDIP 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +      +   L   +   +  L     +          +  G+  +  + Y   P
Sbjct: 286 LGDFHAENVACVALTLMVSMAIPLADLPKLLGRISAPPGRMQEVTAGYGQVYID-YAHTP 344

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            ++   +    +++       + V G     G             +++     VW++   
Sbjct: 345 EALDRCLQAARKLTRAR---LMVVFG----CGGERDREKRPQMGAIAVEQADLVWITSDN 397

Query: 408 --GFHVLALKDALPRSIHVHYSE------TMDGLFLFIQSSLVDGDVVVV--KS 451
             G     +   + + +   Y+         D       ++L +GD++++  K 
Sbjct: 398 PRGEMPAVIASEIEQGMSQPYAAEVRLQLDRDKAIGEAIATLAEGDLLIIAGKG 451


>gi|6634643|emb|CAB64516.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 80.3 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     + I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|6634658|emb|CAB64526.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 79.9 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ QA+     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQAVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA   +  
Sbjct: 62 GAAATLSE 69


>gi|170017365|ref|YP_001728284.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
 gi|169804222|gb|ACA82840.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc citreum KM20]
          Length = 516

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 151/481 (31%), Gaps = 57/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-HYDGHDFILHAVQKG 64
           T   LL +        V     + +  D+R + P+  F  +KG        ++ +A  +G
Sbjct: 23  TIEQLLSSHNLLVSQPVTYHEFSFLHYDTRQVEPETLFV-VKGAFRP---KYLENA--QG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
              +V  + +      + +P + V +V  AL+ L++A     +    I A TG+ GKTT 
Sbjct: 77  ITGIVSESQL-----PVDLPQWQVTNVQKALSLLSMAFFDYPQKNLWIGAFTGTKGKTTA 131

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-----------VDFGIFELGMSH 171
             M    L +    +  + S  + I  P    R   D               + + GM+H
Sbjct: 132 AYMTYNILKAATDNHTALFSTVDRITGPKASDRKKSDLTTPESYELFKDMRRVVDNGMTH 191

Query: 172 LGEI-------RFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
           L          +   + +R  +     I+P H+        E+  + K  +F+  +K   
Sbjct: 192 LIMEVSSQAYLKQRVYGLRYQVGAFLNISPDHIGPNEHPNFEDYLAHKLMLFDHSDKVIV 251

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +   S       K H        +    +            S+ +     L   +  
Sbjct: 252 NAESDHLSEIMTHAKKGHDKIYTYSNAEKGGEYTFTSQSSAIHESQLTVQASDLSEMAGA 311

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G     N L  L + ++  A  +  +K L                    F    
Sbjct: 312 YRLNLPGDFNESNALAALIMAALAGAKHEAMVKGLDTVFIPGRMLSLPIPNHGVAFVDYA 371

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               + +         +    S + +G+ I V+G     G    S   D   V+S     
Sbjct: 372 HNYASMHAL-------LKFAQSQYPDGKVIVVVGSP---GNKGVSRRADFGRVVSEL-AD 420

Query: 403 HVWLSGFH-----VLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V+L+           + D +   I+     VH+             +  D D+V+V  K
Sbjct: 421 VVYLTADDPQFESPKTIADEIAAHINNPKLDVHFEMDRIAAINQALLAARDNDIVIVAGK 480

Query: 451 S 451
            
Sbjct: 481 G 481


>gi|300813521|ref|ZP_07093856.1| Mur ligase family, catalytic domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512367|gb|EFK39532.1| Mur ligase family, catalytic domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 119

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL-- 104
           KG   DGH +I +A   GA + VV          + IP   VD+    L  LA       
Sbjct: 1   KGKITDGHKYIKNAKNNGAIVAVVE-----DFKEVYIPQIKVDNTRTILADLAKNFYKDP 55

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                +I IT + GKTTT  ML   LS  K     IG+     
Sbjct: 56  SKDLKVIGITATNGKTTTSFMLKNILSENKINTGIIGTVYTKF 98


>gi|324991345|gb|EGC23278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK353]
          Length = 481

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 83/514 (16%), Positives = 160/514 (31%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVTAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANGRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N   + F+++  +  ++      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMNHFQIVNEQVASMEHDFYGTGSNNTIIDSQAFSFEAAGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKIFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVDKIADREEAIKKALSLTDREG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVTYPGDYALAEKY 480


>gi|325687075|gb|EGD29098.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK72]
          Length = 481

 Score = 79.9 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 85/514 (16%), Positives = 160/514 (31%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ LA+        K  +
Sbjct: 60  -KEFLEKAVTAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLELIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANDRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     F+++K +  +L      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMDHFQIVKEQVASLEHDFYGADSSNTIKDSQAFSFEATGKLAGN 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N          ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKVFVDYAHNGVS-----LRNLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GLLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTEREG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVAYPGDYALAEKY 480


>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51679 [Arabidopsis
           thaliana]
          Length = 767

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 133/416 (31%), Gaps = 39/416 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       + GI  DSR ++  + F    G      +F+  A ++GA  VV + ++    
Sbjct: 257 VYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEADKRGAVAVVASKEIDIED 312

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS---- 132
                 +  V+D    L  LA +         ++I +TG+ GKTTT  ++     +    
Sbjct: 313 TLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVR 372

Query: 133 --IKKTYACIGSYNNHIGVPLTLAR-------------MPVDVDFGIFELGMSHLGEIRF 177
             +  T +C    +N +  P                  +    +  + E   S       
Sbjct: 373 TGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVME--ASPQELALG 430

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLK 236
               V   IAV T +   +       EE   A+A++F  +            D       
Sbjct: 431 KCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFF 490

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     +  +    ++  AD    K++    ++ + V      +E+    +G H   N+
Sbjct: 491 VQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNI 550

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   + A ++  ++ +       GR +        G       + +         
Sbjct: 551 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDG-------L 603

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             +L  I      R I V+G   E    ++     L   ++        L+  +  
Sbjct: 604 SRLLDSIRELKPRRIITVIGCEGE----NERGKRPLMTKIATEKSDVTMLTSDNPR 655


>gi|240254313|ref|NP_176555.4| MURE; ATP binding / acid-amino acid ligase/ ligase [Arabidopsis
           thaliana]
 gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein
           [Arabidopsis thaliana]
          Length = 772

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 133/416 (31%), Gaps = 39/416 (9%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       + GI  DSR ++  + F    G      +F+  A ++GA  VV + ++    
Sbjct: 257 VYGDLDVEITGIQHDSRGVSAGDLFVCCLGS----ENFLSEADKRGAVAVVASKEIDIED 312

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS---- 132
                 +  V+D    L  LA +         ++I +TG+ GKTTT  ++     +    
Sbjct: 313 TLGCRALVIVEDTNAVLAALASSFYRHPSKNMSVIGVTGTDGKTTTTYLIKSLYEAMGVR 372

Query: 133 --IKKTYACIGSYNNHIGVPLTLAR-------------MPVDVDFGIFELGMSHLGEIRF 177
             +  T +C    +N +  P                  +    +  + E   S       
Sbjct: 373 TGMFSTVSCYIHGDNKLDTPNATMNPDAVLVQSLMAKMLHNGTESLVME--ASPQELALG 430

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-NYDDSFFELLK 236
               V   IAV T +   +       EE   A+A++F  +            D       
Sbjct: 431 KCDEVDFDIAVFTNLTRENTDFRGTDEEYRDAEAKLFSRMVDPERHRKVVNIDDPNAAFF 490

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     +  +    ++  AD    K++    ++ + V      +E+    +G H   N+
Sbjct: 491 VQQGNPNVPVVTFAMENTKADVHPLKFELSLFETQVLVNTPQGILEISSGLLGRHNIYNI 550

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   + A ++  ++ +       GR +        G       + +         
Sbjct: 551 LAAVAVGIAVGAPLEDIVRGVEEVDAVPGRCELIDEEQAFGVIVDHANTPDG-------L 603

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             +L  I      R I V+G   E    ++     L   ++        L+  +  
Sbjct: 604 SRLLDSIRELKPRRIITVIGCEGE----NERGKRPLMTKIATEKSDVTMLTSDNPR 655


>gi|289443662|ref|ZP_06433406.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
 gi|289416581|gb|EFD13821.1| hypothetical protein TBLG_00764 [Mycobacterium tuberculosis T46]
          Length = 258

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 23/213 (10%)

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  EV     G H   N L    +     A V+    AL+   P      R +   
Sbjct: 41  HAHDAQAEVRLGVCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPV--SRHRMQVTT 98

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                T+ID++YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +
Sbjct: 99  RGDGVTVIDDAYNANPDSMRAGLQALAWIAHQPEATRRSWAVLGEMAELGEDAIAEHDRI 158

Query: 393 AEVLSLYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMDGLF 434
             +    ++S + + G                      A  D       V+     D   
Sbjct: 159 GRLAVRLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAAL 217

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             +++ L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 218 ALLRAELRPGDVVLVKASNAAGLGAVADALVAD 250


>gi|6634634|emb|CAB64510.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEIAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|581175|emb|CAA39334.1| UDP-N-acetylmuramyl-tripeptide synthetase [Escherichia coli]
          Length = 124

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 8/106 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              DLL       +   P   +  +++DSR  A  + F A+ G   DG  +I  A+ +G 
Sbjct: 5   NLRDLL----APWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60

Query: 66  GLVVVNTDMVASIGSL----SIPVFGVDDVLGALNKLAVAARLRSK 107
             ++      A+ G +     +PV  +  +   L+ LA        
Sbjct: 61  AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPS 106


>gi|58698810|ref|ZP_00373688.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58534668|gb|EAL58789.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Wolbachia endosymbiont of Drosophila ananassae]
          Length = 410

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 59/431 (13%), Positives = 127/431 (29%), Gaps = 52/431 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +LL     + I +     + G++ + + I     F  +     D   +I   +  G
Sbjct: 1   MKLRELLH----NIIDVNFDIEIKGVTCNPKKIKEGYLFVCVS-ER-D-RIYIDQILSCG 53

Query: 65  AGLVVVNTDMVASIGSLSIP------VFGVDDVLGALNKLAVAARLRSKAT-IIAITGSV 117
           A  ++ +  +  ++    IP           +     +++        +   + A+TG+ 
Sbjct: 54  AKAIIASDCITEALSLGIIPTRDAGICIFHPNPQEIYSEIVSRFYQFKQPKYVAAVTGTN 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGS--YNNHIGVPLTLARMP-------------VDVDF 162
           GKT+  E       +     A IG+     + G       +              + V+ 
Sbjct: 114 GKTSVVEFCRQIWQNSGYNAASIGTLGTCINNGRKGNSNSLTTPGAEDLYATLRGISVEH 173

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S  G  ++  H ++   A  T  +  HL     +      K  +F  +   G 
Sbjct: 174 LVLE--SSSHGIDQYRIHGLKLSAAAFTNFSQDHLDYHKSLGGYLETKKRLFYEVLPEGK 231

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +   D        K        + ++GK K +D  L +         + V++  +   
Sbjct: 232 TAILNADIDEYGALLKIAEKRSNKVVTYGK-KGSDITLLEQTSTPNGQHLTVKIDNQIYN 290

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+L  +GI  +   ++             E              F  +
Sbjct: 291 TFFPVLGKFQAYNLLCAIGISGLNYREIC-----------VEKLVSPPGRMEKVKPFAFV 339

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++  +          L  +  H   + I V G     G             ++     
Sbjct: 340 DYAHTPSA-----LKQALLSLKWHINKKIILVFG----CGGNRDQTKRSEMGKIAQMYAD 390

Query: 403 HVWLSGFHVLA 413
            V ++  +   
Sbjct: 391 KVIITQANSKK 401


>gi|262373951|ref|ZP_06067228.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
 gi|262310962|gb|EEY92049.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter junii
           SH205]
          Length = 452

 Score = 79.9 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 131/422 (31%), Gaps = 66/422 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ KG                  IPV  V D+           R  + A IIAITGS
Sbjct: 82  IQQAIDKG------------------IPV--VGDIQLL--------RRATDAPIIAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   ++ +      K      +   ++G P     +    +  + EL    L    
Sbjct: 114 NAKSTVTTLVGLMAQDAGKKV----AVGGNLGRPALDL-LKDKPELIVLELSSFQLETTS 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L       +AV+  ++  HL     +     AK  IF+G++K             +   
Sbjct: 169 HLNA----EVAVVLNMSEDHLDRHGDMLGYHKAKHRIFQGVKKVVYNR--------DDNL 216

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++        + SFG +     Q    +      W+    +        +  G H   N 
Sbjct: 217 SRPLVPDATPMQSFGLNAPDLNQYGVLRDADGTMWLARGRERILKTSEMYIQGMHNVANA 276

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L I   +   + + ++ L  F   E R                ++S   N  +  AA
Sbjct: 277 LACLAIGEAVGFPLPSMLETLKTFKGLEHRC---EYVQTIDGVRYYNDSKGTNVGATLAA 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L       +G+   +LG   +  +                 +  V L G     ++ 
Sbjct: 334 IDGLGAAIEVNKGKLALILGGQGKGQDFRP------LRNAIQKYVKSVILIGEDAPVIEQ 387

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           A+  +  + ++ ++       Q      DVV++    +S             F   +N L
Sbjct: 388 AIQGTTVIQHASSLKAAVELAQQVTQAEDVVLLSPACASFDMFKSYNDRGHQFVACVNAL 447

Query: 465 LE 466
            E
Sbjct: 448 SE 449


>gi|323351057|ref|ZP_08086714.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
 gi|322122781|gb|EFX94490.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis VMC66]
          Length = 481

 Score = 79.5 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 84/514 (16%), Positives = 160/514 (31%), Gaps = 80/514 (15%)

Query: 1   MNPLWTFHDLLQ-------AI-QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+        +  G           + IS DSR       FF +KG  + 
Sbjct: 1   MIKIETVLDILKEDHNFRDIVKDGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
             +F+  AV  G    +  TD       + IPV  V+DV  A++ L +        K  +
Sbjct: 60  -KEFLEKAVTAGLRFYISETDF-----QVGIPVLLVNDVKQAMSLLVMEFYGHPEKKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTTT       LS   +            G                + +   
Sbjct: 114 LAFTGTKGKTTTAYFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +       I E+  S    ++   + +   + V   I+P H+        E+    K  
Sbjct: 174 ALANGRTHLIMEV--SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N    +F+++K +  +L      +   +   D Q   ++   + +  
Sbjct: 232 LMDNSR---AVIVNSGMDYFQIVKEQVASLEHDFYGAGSNNTIKDSQAFSFEAAGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +              G+    
Sbjct: 289 YDIQLIGRFNQE-------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N    S     ++LS +  H +G+ I +LG     GE  +    D 
Sbjct: 336 TQKNGAKIFVDYAHNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDG 444
             +L+ +    V L+         LA+ + +    S  V      +       S    +G
Sbjct: 388 GRLLNQHPELTVILTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREG 447

Query: 445 DVVVVKSSNSCGFYRLIN----------LLLEEF 468
           D V++        Y+++            L E++
Sbjct: 448 DAVILAG-KGADAYQIVEGEKVAYPGDYALAEKY 480


>gi|116670126|ref|YP_831059.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
 gi|116610235|gb|ABK02959.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arthrobacter sp. FB24]
          Length = 550

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/501 (15%), Positives = 143/501 (28%), Gaps = 69/501 (13%)

Query: 3   PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV- 61
           PL T  +   ++     G      V GIS++SR++ P + + A+ G    G DF+  AV 
Sbjct: 31  PLGTIGE---SVGVVVPGASSSVPVTGISLNSRTVQPGDLYVALPGAARHGADFVSQAVA 87

Query: 62  ---------QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-----SK 107
                      GA L       +A      +PV  VD+   A+  LA           + 
Sbjct: 88  AGAVAVVTDDDGARL-------LALSADTPVPVLVVDEPRSAVGGLAALIYQSRPEGGTS 140

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTL 153
            ++  +TG+ GKTTT   +   L ++ +    IG+     G                  L
Sbjct: 141 PSLFGVTGTNGKTTTTYFINALLQALGRRTGLIGTIEILAGGAPIPSLLTTPESTDLHAL 200

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +  +       + +S           V+  +A  T +   HL     ++E    KA +
Sbjct: 201 LALMRERGLDAASMEVSSHAVSFHRVDGVQFDVAGFTNLTQDHLDLHGTMDEYFQTKARL 260

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F       +  +  DD +   L + +         + G    A          + +    
Sbjct: 261 FT-PRHAKSAVITVDDEWGRRLASAAGIPVTTLATAQGNDPAAPAADWTVTAAAPRGLGT 319

Query: 274 VQLQGKSMEVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                                    N  +   +V     +  T   AL    P       
Sbjct: 320 EFRLRHRDGSELRVHTGLPGSFNVSNAALATVMVLASGVEPATLQAALDEADPFTVAVPG 379

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               ++     ++D ++N +        ++ +  S     R I V G   +         
Sbjct: 380 RMQLVSTAPAAVVDFAHNPDAL----QRALEAVRSTEPGSRVIVVFGATGQ----RDQGK 431

Query: 390 IDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIH---------VHYSET--MDGL 433
                 ++      V +S          A++  +                  E+   D  
Sbjct: 432 RPAMGAIAARLADVVIISDDDPHDEDAAAIRADVLAGAREAKESGGLGCTILESYPRDVA 491

Query: 434 FLFIQSSLVDGDVVVVKSSNS 454
                +     D ++V     
Sbjct: 492 IREAVNMAQPQDTILVAG-RG 511


>gi|225871120|ref|YP_002747067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
 gi|225700524|emb|CAW94989.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus equi subsp. equi 4047]
          Length = 481

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 135/436 (30%), Gaps = 60/436 (13%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
            + +S DSR    Q  FFA KG  +   DF+  A+ KG  L V   D       + IPV 
Sbjct: 35  FDSLSYDSRQADEQTLFFA-KGSAFKA-DFLRQAIAKGLRLYVSEIDY-----QVGIPVI 87

Query: 87  GVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
            V+++  A++  A+A     ++K  ++A TG+ GKTT        L    K         
Sbjct: 88  LVNNIKHAMSLAAMAFYDYPQNKLKLLAFTGTKGKTTAAYFAYHMLKESHKPALLSTMNT 147

Query: 145 NHIGVPLTLARMP----------------VDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              G     +++                   +   + E+  S    +    + +   + V
Sbjct: 148 TLDGQHFFKSQLTTPESLDLFAMMAQCVANGMTHLVMEV--SSQAYLVGRIYGLTFDVGV 205

Query: 189 ITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
              I+P H+        E+    K  + E              +      A         
Sbjct: 206 FLNISPDHIGPIEHPSFEDYFYHKRLLMENSRAVVVNSGMEHFNILAEQVA--------- 256

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                K  +   +    +    Q++        + +     IG    +N +        L
Sbjct: 257 ----DKPHDFYGKGACNRLLQRQAFSFQAAGKVAGDYAIQLIGSFNQENAMAAGLACLRL 312

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A ++   + ++  +                  T   + +     +  +   +LS +  +
Sbjct: 313 GASLEDIRQGIAKTNVPGRM--------EVLTMTNQAKVFVDYAHNGDSLEKLLSVVEEY 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRS 421
            +G+   +LG     GE  ++   D  +V++ +    + L+           + + +   
Sbjct: 365 QKGQIYLILGAPGNKGESRRA---DFGQVINQHPNVRIILTADDPNFEDPQLISEEIASY 421

Query: 422 IH--VHYSETMDGLFL 435
           IH  V           
Sbjct: 422 IHREVDIIIDRKEAIK 437


>gi|167571354|ref|ZP_02364228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia oklahomensis C6786]
          Length = 514

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 76/483 (15%), Positives = 154/483 (31%), Gaps = 55/483 (11%)

Query: 8   HDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAV 61
             +  A+   + H            +  D+RS+   +AF A      DG D   FI  A+
Sbjct: 12  QQIAAALTWLRAHVASGAQ------LHADTRSLQAGDAFIAYA---VDGADNRPFIADAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            +GA  V+   +  A+ G        V  +     ++A             + +TG+ GK
Sbjct: 63  ARGAAAVLYQPEGFAADGLEPATSLAVPALDALAGEIASGWYGNPSDALFAVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---------------- 163
           T+  + +  AL+++ +  A IG+  +  G+P  L                          
Sbjct: 123 TSCTQWIAAALTALHQPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQ 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
              + +S     +   +     +AV T +   HL     +E   +AK ++F        +
Sbjct: 181 AVAMEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTLEAYEAAKTKLFAWRGLRLAV 240

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGK 279
               D +   LL   +  +         + + +D        K +  +  +   +     
Sbjct: 241 VNRDDPAGRRLLANLAGRVRTIAYGIDARPEASDADRELVATKVRATATGTAFHLTSSWG 300

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +V    +G     N+L  LG +       D A+  +       GR +R    L     
Sbjct: 301 DADVEVGTLGTFNVSNLLAVLGTLLAADVPFDAALAEIENLESVNGRMERLGGRLQNDEP 360

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y   P +++  +  L  I+    G  + + G     G    +    L   ++  
Sbjct: 361 LVVVD-YAHTPDALEKTLDALRPIARARGGELVCMFG----CGGDRDATKRPLMGAIAER 415

Query: 400 NISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +  +         +   +  +      E      L         DVV++ 
Sbjct: 416 LADKVVVTSDNPRSEDPQKIIDQIAAGMQDAAQARRVEDRASAILQAVRGAAREDVVLLA 475

Query: 450 -KS 451
            K 
Sbjct: 476 GKG 478


>gi|257870823|ref|ZP_05650476.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
 gi|257804987|gb|EEV33809.1| cytoplasmic peptidoglycan synthetase [Enterococcus gallinarum EG2]
          Length = 504

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/471 (13%), Positives = 128/471 (27%), Gaps = 59/471 (12%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                +       +S DSR       FF  KG  +    ++  AV +G    V       
Sbjct: 32  TVPQEMNDLIFTSLSYDSRQTDANTLFFC-KGAAFK-ESYLESAVAQGLQCYVSEHPYEN 89

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTTKEMLTIALSSIK 134
                      V D+  A+  +A A     +  +  I ITG+ GKT+    +   L+   
Sbjct: 90  CSAYG----IIVTDIRAAMACIAQAFYNNPQDQLFKIGITGTKGKTSCAYFVREILAKTT 145

Query: 135 KTYACIGSYNNHIG------------------VPLTLARMPVDVDFGIFELGMSHLGEIR 176
                  S   +                      +    +   +   + E+  S      
Sbjct: 146 NQKVAFFSSEENTVDGKNYQEAVLTTPETLDLYAMMAEAVANGMTHLVMEV--SSQAYKT 203

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                +   I +   I+P H+        ++    K E+    ++      +        
Sbjct: 204 KRVSGITYEIGIFLNISPDHIGPVEHPDFDDYLFCKRELIHNSKQMIINRQSDYFE---- 259

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG--KSMEVVHHGIGYHM 292
           L  ++ A     + ++G+       L       +   +  +      + +     +G   
Sbjct: 260 LLKETCAAHQVPLITYGQCDGDYQVLPAESGDPKSFRIHSEKDILLVNGDYQLALLGEFN 319

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N    +    +  A  +      +               L +    LI   Y  N  S
Sbjct: 320 HDNATAAIVAACLAGATQEE-----AQSVLPNVTIPGRMIVLEKQNGALIIVDYAHNYLS 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV- 411
            K+   +   + P   GR I V G     G  ++S   D+   LS Y    V+L+     
Sbjct: 375 FKSLSELAHTLRPK--GRLIFVTGSA---GGKAESRRPDMGRALSEY-ADKVYLTSDDPN 428

Query: 412 ---------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                             ++ +              +     D+V++  K 
Sbjct: 429 FEDPRAIAAEIAAAITAPTVIIEEQMDRSLAVQSAVAEAASQDIVILAGKG 479


>gi|227513568|ref|ZP_03943617.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
 gi|227083441|gb|EEI18753.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus buchneri ATCC 11577]
          Length = 511

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/473 (13%), Positives = 134/473 (28%), Gaps = 62/473 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ +S+ ++    FF  KG ++    ++  A Q+GA   V          +++I
Sbjct: 28  DQSFQSVAYNSKVVSDNCLFFC-KG-NF-REAYLADAQQRGASGYVSEKQY----HNVTI 80

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
           P   V ++  +++ L+ A     ++    IA TG+ GKTT+       L  +        
Sbjct: 81  PGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKGKTTSAYFTKSILDKVYDRKVALF 140

Query: 137 --------YACIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVR 183
                           + +  P +      M   V   +  L M  S     +   + +R
Sbjct: 141 STINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLR 200

Query: 184 PHIAVITTIAPAHL---------SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
             + V   I+P H+               E++     +     +    + + Y       
Sbjct: 201 YDVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSKKCVINADSDHMVDVYYTAKATSQ 260

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVVHHGIG 289
            +         +  +    K+ ++Q         +  +                     G
Sbjct: 261 PEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIRLISVSDKAKQLGIDGTYEISIAG 320

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N +      +++ A        LS                 +   T+  + Y  N
Sbjct: 321 DYNEGNAVSAAITSAMMGAHPTEIEYGLSHTTVPGR----MEIYSTKQHGTIYVD-YAHN 375

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             S+ + +  L       +G  I + G   + G   +     L + ++         +  
Sbjct: 376 YGSLHSVLDFLK--KQSPDGNVIVITGSTGDKGIDRREG---LGKAINESANVAYLTTDD 430

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + D +   I        Y                 GD+VVV  K 
Sbjct: 431 PATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKG 483


>gi|220912334|ref|YP_002487643.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
 gi|219859212|gb|ACL39554.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arthrobacter
           chlorophenolicus A6]
          Length = 545

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 77/496 (15%), Positives = 144/496 (29%), Gaps = 69/496 (13%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI--------- 57
              +  A+     G      V GI+++SRS+   + + A+ G    G DF+         
Sbjct: 32  LASIGAAVGVAVPGHAADVTVTGITLNSRSVEAGDLYVALPGASRHGADFVAQAVGAGAV 91

Query: 58  ----LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA----- 108
                 A   GA L       +A      +PV  VD     +  L+ A    +       
Sbjct: 92  AVLTDDA---GARL-------LALGNDTPVPVLVVDKPRNVVGPLSAAIYGSTDGAEDDF 141

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLA 154
           T+  +TG+ GKTTT   +   L ++      IG+     G                  L 
Sbjct: 142 TLFGVTGTNGKTTTTYFINSLLRALGTRSGLIGTIEILAGTEPIPSLLTTPESTEVHGLL 201

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +   G   + +S           V   +A  T +   HL     +++  + KAE+F
Sbjct: 202 ALMRERGLGAAAMEVSSHAISYQRVDGVLFDVAGFTNLTQDHLDLHGTMDDYFATKAELF 261

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
               +     +  DD +   L     A    T  S      AD+ +   +     +   +
Sbjct: 262 T-PARARRAVVTVDDEWGRRLA--GTAGIPVTTLSTDGQAAADWAVATTEPRGLGTAFTL 318

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +    +   +H G+             ++ +        ++               R  L
Sbjct: 319 KGPDGAELRLHTGLPGSFNVANAALAAVMVLAGGVDHAVLQEAVDTADPFTVAVPGRMQL 378

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  + +  +   A    A ++ +   P  + R I V G   +              
Sbjct: 379 VAEQPAAVVDFAHNTDA---LARALEAVRPPAPDSRLIVVFGATGQ----RDQGKRPAMG 431

Query: 395 VLSLYNISHVWLS-----GFHVLAL-KDALPRSIHVHYSET----------MDGLFLFIQ 438
            ++      V ++          A+  D L  + H   SE+           D       
Sbjct: 432 AVAARLADTVIITDDDPHDEDAAAIRADVLAGAEHARSSESLPCEILEVFPRDEAIRRAV 491

Query: 439 SSLVDGDVVVVKSSNS 454
                 D ++V     
Sbjct: 492 ELAGPSDSILVAG-RG 506


>gi|327462062|gb|EGF08391.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK1057]
          Length = 481

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/476 (17%), Positives = 151/476 (31%), Gaps = 65/476 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGETFK-KEFLEKAVTAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++ LA+        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
                 LS   +            G                + +    +       I E+
Sbjct: 127 YFAYQILSQSHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANGRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    ++   + +   + V   I+P H+        E+    K  + +       + +
Sbjct: 187 --SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N    +F+++K +  +L      +   +   D Q   ++   + +               
Sbjct: 242 NSGMDYFQIVKEQVASLEHDFYGAGSNNTIKDSQAFSFEAAGKLAGHYDIQLIGRFNQE- 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         +           +              G+        G    +D +
Sbjct: 301 ------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFVDYA 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N    S     ++LS +  H +G+ I +LG     GE  +    D   +L+ +    V 
Sbjct: 349 HNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVI 400

Query: 406 LSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
           L+         LA+ + +    S  V      +       S    +GD V++  K 
Sbjct: 401 LTADDPNYEDPLAIAEEIASYISYPVEKIADREEAIKKALSLTDREGDAVILAGKG 456


>gi|83720483|ref|YP_441661.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|257137830|ref|ZP_05586092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
 gi|83654308|gb|ABC38371.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis E264]
          Length = 514

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 147/481 (30%), Gaps = 51/481 (10%)

Query: 8   HDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAV 61
             +  A+   + H            +  D+RS+   + F A      DG D   FI  A+
Sbjct: 12  QQIAAALAWLRAHVASGAQ------LHADTRSLQAGDVFVAYA---VDGADNRPFIADAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            +GA  V+   +   + G        V  +      +A             + +TG+ GK
Sbjct: 63  ARGAAAVLYQPEGFPAAGLDPATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIF 165
           T+  + +  AL+++++                + +       P     +    D      
Sbjct: 123 TSCTQWIAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     +AV T +   HL      +   +AKA++F        +  
Sbjct: 183 AMEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHCAVVN 242

Query: 226 NYDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             D +   LL      +          + G   + +      +  +  +   V       
Sbjct: 243 RDDPAGRRLLANLVGRVRTIAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEA 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  +       GR +R    L      +
Sbjct: 303 DVEVGTLGTFNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLV 362

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    G  + + G     G    +    L   ++    
Sbjct: 363 VVD-YAHTPDALEKTLEALRPIAQARGGELVCMFG----CGGDRDATKRPLMGAIAERLA 417

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +  + +    E      L         DVV++  K
Sbjct: 418 DKVVVTSDNPRSEEPQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|167618576|ref|ZP_02387207.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis Bt4]
          Length = 514

 Score = 79.5 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/481 (14%), Positives = 148/481 (30%), Gaps = 51/481 (10%)

Query: 8   HDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAV 61
             +  A+   + H            +  D+RS+   + F A      DG D   FI  A+
Sbjct: 12  QQIAAALAWLRAHVASGAQ------LHADTRSLQAGDVFVAYA---VDGADNRPFIADAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            +GA  V+   +   + G        V  +      +A             + +TG+ GK
Sbjct: 63  ARGAAAVLYQPEGFPAAGLDPATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIF 165
           T+  + +  AL+++++                + +       P     +    D      
Sbjct: 123 TSCTQWIAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     +AV T +   HL      +   +AKA++F        +  
Sbjct: 183 AMEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHCAVVN 242

Query: 226 NYDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             D +   LL   +  +          + G   + +      +  +  +   V       
Sbjct: 243 RDDPAGRRLLANLAGRVRTIAYGIDAPAQGADADRELVATNVRATATGTAFRVTSPWGEA 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  +       GR +R    L      +
Sbjct: 303 DVEVGTLGTFNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLV 362

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    G  + + G     G    +    L   ++    
Sbjct: 363 VVD-YAHTPDALEKTLEALRPIAQARGGELVCMFG----CGGDRDATKRPLMGAIAERLA 417

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +  + +    E      L         DVV++  K
Sbjct: 418 DKVVVTSDNPRSEEPQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|296113987|ref|YP_003627925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
 gi|295921681|gb|ADG62032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase MurE [Moraxella catarrhalis RH4]
          Length = 520

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 141/464 (30%), Gaps = 52/464 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-------GHDFILHAVQKGAGLVVVNTDMVA-SI 78
            +   +DSR I   + F  +K    D        + +++      A  V+   D+V   +
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLDL 99

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +  
Sbjct: 100 DGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASG 159

Query: 135 KTY-ACIGSYNNHIG-------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +      + N  +G             +  T           +  L  S  G  ++   
Sbjct: 160 ISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQ 219

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T ++  HL   + +     AKA++F+        F   +      L     
Sbjct: 220 GVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYET 279

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      YS  +  NADF  +  +   +   +EVQ     M  +   +G     N+L ++
Sbjct: 280 ADFQIIGYS-QQKPNADFYAKSVRPSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASM 338

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                          A +   P      +      Q   +           +  A   VL
Sbjct: 339 AA-------FTALNPARAADLPNLITQLQGARGRMQRASSQTGAFIIDYAHTPDALKQVL 391

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           S +  H  GR IAV G     G               L     V L+  +          
Sbjct: 392 SSLRRHCTGRLIAVFG----CGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 413 -ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  L    H  +               +    D+VV+  K 
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKG 491


>gi|300774444|ref|ZP_07084307.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
 gi|300506259|gb|EFK37394.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Chryseobacterium
           gleum ATCC 35910]
          Length = 445

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 114/345 (33%), Gaps = 31/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTTT  ++   L +             +IG          + ++ + E
Sbjct: 100 DAKIIAITGSNGKTTTTSLIYYILKNDGLNV----GLGGNIGYSFAKQVADENHEYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L          RP+I+++  ++  HL  ++   EE A AK  I E  E       
Sbjct: 156 VSSFQLD----DIQNFRPYISLLLNLSQDHLDQYNYNYEEYALAKFRIAENQENDNFFIY 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + L  K         +S  +       + + +   +     ++ +        
Sbjct: 212 NKDDEMSKNLLEKLEIKAKMIPFSTKEKLQEGGFVNEDEIVVK-----MKDEFSMKVDEL 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L       IL  + ++   +L  F   E R               I++S
Sbjct: 267 SLLGNHNVANSLAASIAGKILEINNESIRHSLMTFQAVEHRL---EFVTEIDGVKYINDS 323

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +   +    G            G    + + ++ E L    +  + 
Sbjct: 324 KATNVNATYYALESMKTPTVWIVG------------GLDKGNDYTEI-EDLVKRKVKAIV 370

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             G     + D         Y + +M+      +S    GD V++
Sbjct: 371 CLGIDNKKIIDFFKDKKEFIYDTSSMEEAVRISKSLAKKGDTVLL 415


>gi|146318305|ref|YP_001198017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 05ZYH33]
 gi|146320499|ref|YP_001200210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis 98HAH33]
 gi|253751469|ref|YP_003024610.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|253753370|ref|YP_003026511.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|253755801|ref|YP_003028941.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|166224789|sp|A4W0C1|MURE_STRS2 RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|166224791|sp|A4VU28|MURE_STRSY RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|145689111|gb|ABP89617.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           05ZYH33]
 gi|145691305|gb|ABP91810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           (UDP-MurNac-tripeptide synthetase) [Streptococcus suis
           98HAH33]
 gi|251815758|emb|CAZ51359.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis SC84]
 gi|251818265|emb|CAZ56074.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis BM407]
 gi|251819616|emb|CAR45345.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Streptococcus suis P1/7]
 gi|319757886|gb|ADV69828.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus suis JS14]
          Length = 481

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/489 (13%), Positives = 145/489 (29%), Gaps = 74/489 (15%)

Query: 4   LWTFHDLLQAIQG-----------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           + T   +L+ ++             +         + +S DSR+++P   FFA KG  + 
Sbjct: 1   MITIERVLEILKADANFRHIKQNDQTDSTWTDVQFDALSYDSRTVSPMTLFFA-KGLAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATI 110
             +F+  A++ G    V           + IP   V D+  A++ +A+      + +  +
Sbjct: 60  -KEFLEKAIEAGLAFYVSE-----INYEVGIPAIIVHDIKQAMSLIAMEFHGHPQKQLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------------PLTLA 154
           +A TG+ GKTT        L   KK            G                  +   
Sbjct: 114 LAFTGTKGKTTAAYFAFNILKQSKKPAMLSTMNTTLDGKTFFKSTLTTPESLDLFAMMAE 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +   +   I E+  S    +    + +   + V   I+P H+        E+    K  
Sbjct: 174 AVKNGMTHLIMEV--SSQAYLVKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRL 231

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +       + +N     FE++K +  +          +++ +      +    + +  
Sbjct: 232 LMDNSR---AVIVNAGMDHFEVVKEQVSSKDHDFYGPTSENQISQSAGFDFTATGKLAGH 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                      +           +     +        G+    
Sbjct: 289 YDIQLIGGFNQE-------------NAIAAGLACLRLGASLEDIHTGIAQTNVPGRMEVL 335

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
               G    +D ++N +         ++  +  H  G+   +LG     GE  +    D 
Sbjct: 336 TQQNGAKVFVDYAHNGDS-----VKKLIDVVLEHQTGKVFLILGAPGNKGESRRK---DF 387

Query: 393 AEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMDGLFLFIQSS-LVDG 444
             +L+ Y    V L+          A+ + +   +    ++    +       S      
Sbjct: 388 GLLLNDYPQIEVILTADDPNREDPAAIAEQIRAHMTRTSNFILDREEAIRTAMSQTSSPK 447

Query: 445 DVVVV--KS 451
           D V++  K 
Sbjct: 448 DAVIIAGKG 456


>gi|319949411|ref|ZP_08023474.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
 gi|319436923|gb|EFV91980.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Dietzia cinnamea P4]
          Length = 436

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 68/433 (15%), Positives = 138/433 (31%), Gaps = 32/433 (7%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVN--GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           + T   L  A+    +G      V+  G +I ++   P   F A+ G    G  F   AV
Sbjct: 1   MTTARQLADAVGARLLGDRSGADVDLIGATIRAQDCGPGILFAALPGTRVHGASFGATAV 60

Query: 62  QKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSV 117
           + GA  V+ + + +  + +++  +PV         L  ++ A      +   ++ ITG+ 
Sbjct: 61  EAGASAVLTDPEGIELMAAVAGRLPVLVHPAPRAVLGAVSAAVTGDPSADLDVVGITGTS 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--------------DVDFG 163
           GKTTT  ++  AL         IG+  + +      +R+                     
Sbjct: 121 GKTTTTYLVEAALEGCGHVAGLIGTTGSRVDGRALPSRLTTPEAPEFQALLARMRAAGAR 180

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
                +S           VR  +     ++  HL     +++   AKA +F+     G+ 
Sbjct: 181 AVAAEVSSHALRLGRVDGVRFAVGAFLNLSQDHLDFHPSMDDYFRAKARLFDVEADPGSA 240

Query: 224 FLNYDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               + +     +    +   +    +    +              +++   E  ++G  
Sbjct: 241 VWPAERAVVVIDDEWGRRLVGMRPDAVTVSAEPDADADWTAGESTPTDRDTQEFTVRGPR 300

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              V   +      N+   L  ++I+ A       A +        G+       Q F  
Sbjct: 301 GLTVDVELPLMGRFNVANALVALAIVDALGGDVAAAAAGLMRVRVPGRLEPVVRGQDFRV 360

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           L+D ++     +      VL  +    EGR   VLG     G              +   
Sbjct: 361 LVDYAHKPGAVAA-----VLRSVRAQTEGRVAVVLGA----GGDRDPGKRPKMGAAAAEI 411

Query: 401 ISHVWLSGFHVLA 413
              V ++  +  +
Sbjct: 412 ADLVVVTDDNPRS 424


>gi|33866222|ref|NP_897781.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 8102]
 gi|46576934|sp|Q7U5L3|MURE_SYNPX RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33639197|emb|CAE08205.1| UDP-N-acetylmuramyl-tripeptide synthetase [Synechococcus sp. WH
           8102]
          Length = 500

 Score = 79.1 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 66/462 (14%), Positives = 135/462 (29%), Gaps = 48/462 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQKG 64
           + H LL+ +       +    +  I+ DSR +     F  + G  +DG  F         
Sbjct: 4   SLHALLRDVGLELPAGLADPQLTSITSDSRLVGEGSLFLGLPGERFDGGRFWRQALEAGA 63

Query: 65  AGLVVVNTDMVASIGSLSIPVFGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  V+  +       +   PV  + + V  ++ +LA +        +  I      T  K
Sbjct: 64  AAAVIGPSAAQELPPAADQPVLVLREPVARSIGELAASYWGHPCRRMALIGV--TGTNGK 121

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE----------------- 166
              T  +  +        +    +        +       + +                 
Sbjct: 122 TTTTHLIEHLAVRVGQPTALFGTLVNRWPGYSITATHTTSVADRLQAQLAEAASAGSQLA 181

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGT 222
            + +S    ++      R   AV T +   HL     +E    AKA +F          +
Sbjct: 182 AMEVSSHALVQERVAGCRFAGAVFTNLTQDHLDYHGTMESYYEAKARLFTAPLLDGDGPS 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD +   L  +   LG +   S      A+ Q+   +   +     +     S  
Sbjct: 242 AVVNGDDPWGSRLAEQ---LGGRCWRSSLGDPQAELQMVDLEMTGQGVRGRLLSPAGSGA 298

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G     N+L  +G++      +   ++A+  F    GR    R  +N      +
Sbjct: 299 FCSPLLGRFNLMNLLQAVGVLLQRGLPLAPLLEAVGSFRGVPGR--MERVVVNGAESAAL 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                    +     + L+   P  +GR + V G     G             ++     
Sbjct: 357 PTVLVDYAHTPDGLENALAASRPFTDGRLVCVFG----CGGDRDRGKRPQMAAIAARLAD 412

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            V ++  +                +E  D +   + + +  G
Sbjct: 413 RVVVTSDNPR--------------TEDPDQIIADVVAGMPSG 440


>gi|326559301|gb|EGE09728.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 7169]
 gi|326567256|gb|EGE17376.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 12P80B1]
          Length = 520

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/464 (17%), Positives = 141/464 (30%), Gaps = 52/464 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-------GHDFILHAVQKGAGLVVVNTDMVA-SI 78
            +   +DSR I   + F  +K    D        + +++      A  V+   D+V   +
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLDL 99

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +  
Sbjct: 100 DGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASG 159

Query: 135 KTY-ACIGSYNNHIG-------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +      + N  +G             +  T           +  L  S  G  ++   
Sbjct: 160 ISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQ 219

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T ++  HL   + +     AKA++F+        F   +      L     
Sbjct: 220 GVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYET 279

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      YS  +  NADF  +  +   +   +EVQ     M  +   +G     N+L ++
Sbjct: 280 ADFQIIGYS-QQKPNADFYAKAVRLSLDCVEIEVQTPQGEMTAISPLLGLFNVDNLLASM 338

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                          A +   P      +      Q   +           +  A   VL
Sbjct: 339 AA-------FTALNPARAADLPNLITQLQGARGRMQRASSQTGAFIIDYAHTPDALKQVL 391

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           S +  H  GR IAV G     G               L     V L+  +          
Sbjct: 392 SSLRRHCTGRLIAVFG----CGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 413 -ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  L    H  +               +    D+VV+  K 
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKG 491


>gi|6634688|emb|CAB64538.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDISIFEDTRLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|229826928|ref|ZP_04452997.1| hypothetical protein GCWU000182_02312 [Abiotrophia defectiva ATCC
          49176]
 gi|229788546|gb|EEP24660.1| hypothetical protein GCWU000182_02312 [Abiotrophia defectiva ATCC
          49176]
          Length = 76

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
          M  L T   + +A +G  +G     Q  V  I  D R       F  IKG   D H+FI 
Sbjct: 1  MKNL-TLEHIAEACKGIYVGPEEKKQLEVKSIFTDGRKAEEGGLFVPIKGARVDAHNFIE 59

Query: 59 HAVQKGAGLVVVNTDM 74
            ++KG    +   D+
Sbjct: 60 DVMEKGVFATLSEKDL 75


>gi|6634661|emb|CAB64528.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|332359085|gb|EGJ36906.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK49]
          Length = 481

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 83/501 (16%), Positives = 158/501 (31%), Gaps = 74/501 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F D+++   G           + IS DSR       FF +KG  +   +F+  AV  G 
Sbjct: 16  NFRDIVK--DGEYFFSYSGLTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSAGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTK 123
              +  TD       + IPV  V+DV  A++ LA+        K  ++A TG+ GKTTT 
Sbjct: 72  RFYISETDF-----QVGIPVLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFGIFEL 167
                 LS   +            G                + +    +  D    I E+
Sbjct: 127 YFAYQILSQNHRPALLSTMNTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    ++   + +   + V   I+P H+        E+    K  + +       + +
Sbjct: 187 --SSQAYLKKRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIV 241

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N     F+++K +  ++      +   +   D Q   ++   + +               
Sbjct: 242 NSGMDHFQIVKEQVVSMEHDFYGAGSSNTIIDSQAFSFEAAGKLAGHYDIQLIGRFNQE- 300

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         +           +              G+        G    +D +
Sbjct: 301 ------------NAVAAGLACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKIFVDYA 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N    S     ++LS +  H +G+ I +LG     GE  +    D   +L+ +    V 
Sbjct: 349 HNGVSLS-----NLLSVVEEHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVI 400

Query: 406 LSG-----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGF 457
           L+         LA+ + +    S  V      +       S    +GD V++        
Sbjct: 401 LTADDPNYEDPLAISEEIASYISYPVDKIADREEAIKKALSLTDREGDAVILAG-KGADA 459

Query: 458 YRLIN----------LLLEEF 468
           Y+++            L E++
Sbjct: 460 YQIVEGEKVTYPGDYALAEKY 480


>gi|227510559|ref|ZP_03940608.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190211|gb|EEI70278.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 514

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/473 (13%), Positives = 133/473 (28%), Gaps = 62/473 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ +S+ ++    FF  KG ++    ++  A Q+GA   V          +++I
Sbjct: 31  DQSFQSVAYNSKVVSDNCLFFC-KG-NF-REAYLADAQQRGASGYVSEKQY----HNVTI 83

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
           P   V ++  +++ L+ A     ++    IA TG+ GKTT+       L  +        
Sbjct: 84  PGIIVKNIQKSMSLLSAAFFGFPQNNLPTIAYTGTKGKTTSAYFTKSILDKVYDRKVALF 143

Query: 137 --------YACIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVR 183
                           + +  P +      M   V   +  L M  S     +   + + 
Sbjct: 144 STINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLH 203

Query: 184 PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            ++ V   I+P H+         +    K ++    +K      +            +  
Sbjct: 204 YNVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSKKCVINADSDHMVDVYYTAKATSQ 263

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------------KSMEVVHHGIG 289
                +Y    S   +   + ++  S    +                            G
Sbjct: 264 PEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKRLGIDGTYEISIAG 323

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N +      +++ A        LS                 +   T+  + Y  N
Sbjct: 324 DYNEGNAVSAAITSAMMGAHPTEIEYGLSHTTVPGR----MEIYSTKQHGTIYVD-YAHN 378

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             S+ + +  L       +G  I + G   + G   +     L + ++         +  
Sbjct: 379 YGSLHSVLDFLK--KQSPDGNVIVITGSTGDKGIDRREG---LGKAINESANVAYLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + D +   I        Y                 GD+VVV  K 
Sbjct: 434 PATEDPKVIADEIAAHIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKG 486


>gi|52842822|ref|YP_096621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|62900494|sp|Q5ZSA3|MURD_LEGPH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52629933|gb|AAU28674.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 447

 Score = 79.1 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 125/356 (35%), Gaps = 29/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P +A I  + P HL     +E    AK  I
Sbjct: 148 LDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G +       +                      SFGK   +        +    +++ 
Sbjct: 204 YRGAKAVLFNREDVYT------VPHQSCQADIKCISFGKDAPS-MGNWGLIEQENTTYLA 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++           G H   N L    +       +   +  L  F     R +  R  
Sbjct: 257 KGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +    IS ++ I    +G+ + + G     G+   +   +LA
Sbjct: 317 DGVG---WINDSKGTNIGAT---ISAINGIGGSMQGKIVLIAG-----GQGKGADFQELA 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +S + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 366 QPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|227432271|ref|ZP_03914266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351970|gb|EEJ42201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 490

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 139/481 (28%), Gaps = 63/481 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-HYDGHDFILHAVQKG 64
           T  +LL                + +  D+R +     F  IKG        ++ +    G
Sbjct: 7   TIQNLLVYHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK---RAYLDNV--HG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
              ++    +      + +P + V +V  AL+ L++A     + +  I A TG+ GKTT 
Sbjct: 61  ITGLITEKKI-----DVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTA 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFGIFE---- 166
                  L      +  + S  + I  P                 +  D+   +      
Sbjct: 116 AYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTH 175

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S    ++   + +R  +     I+P H+        E+  + K  + +  ++   
Sbjct: 176 LVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLMLLDHSDEVIV 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                          K+H      +Y++ +      +    +     + ++ +       
Sbjct: 236 NAETDHFDTIYTYAKKTH----HKVYTYSRQMFTSEESAIHESRF--TVVKSEFNEMLGS 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G     N +  + +VS         +K L                    F    
Sbjct: 290 YRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLPINGHGVAFVDYA 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           +    + +  GR + V+G     G   ++    +   L+     
Sbjct: 350 HNFVS-------MQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLA----D 398

Query: 403 HVWLSGFH---------VLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V+L+               +   +      VHY            S+  + D+V+V  K
Sbjct: 399 VVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|148988716|ref|ZP_01820149.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP6-BS73]
 gi|147925917|gb|EDK76992.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP6-BS73]
          Length = 101

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYS------E 428
           M E+G+ S   H  +   LS   +  V   G  +  L   + +     HV+Y       +
Sbjct: 1   MKELGDQSIQLHNQMILSLSPDVLDTVIFYGEDIAELAQLVSQMFPIGHVYYFKKTEDQD 60

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
             + L   ++ SL   D +++K SNS    +L+  L  E
Sbjct: 61  QFEDLVKQVKESLGAYDQILLKGSNSMNLAKLVERLENE 99


>gi|54298605|ref|YP_124974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Paris]
 gi|62900489|sp|Q5X1S4|MURD_LEGPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53752390|emb|CAH13822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Paris]
          Length = 447

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 125/356 (35%), Gaps = 29/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P +A I  + P HL     +E    AK  I
Sbjct: 148 LDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G +       +                      SFGK   +        +    +++ 
Sbjct: 204 YRGAKAVLFNREDVYT------VPHQSCQTDIKCISFGKDAPS-MGNWGLIEQENTTYLA 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++           G H   N L    +       +   +  L  F     R +  R  
Sbjct: 257 KGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +    IS ++ I    +G+ + + G     G+   +   +LA
Sbjct: 317 DGVG---WINDSKGTNIGAT---ISAINGIGGSMQGKIVLIAG-----GQGKGADFQELA 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +S + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 366 QPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|46446885|ref|YP_008250.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
 gi|62900536|sp|Q6MBS4|MURD_PARUW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46400526|emb|CAF23975.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase murD
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 444

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 123/368 (33%), Gaps = 49/368 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168
           II +TG+ GKTT   ++T  L++             ++G PLT   + +D  +  + EL 
Sbjct: 113 IIGVTGTNGKTTVTLLITHILNANGL----KAKALGNVGTPLTREILTLDFQEIAVLELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   +          AV+  I P HL  +  +E  A +K +I + L+K+G +F+   
Sbjct: 169 SYQLDTFQQQVL----DEAVVLNITPDHLERYETMENYAKSKFQIGKCLKKSGKLFVE-- 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    +   L      ++G   +            E       +Q   + +   G 
Sbjct: 223 ----RKAAVEYQHLLNFPHSTYGYLPSCHTYTDLCSVFLEG------MQQFELPLEWQGK 272

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
             H  +N+L    I +         ++AL  F     R       L +      D+S   
Sbjct: 273 ENHDLENLLAAYAICARRGIKPQQFLQALKTFQKPSHRV---EFVLEKNGIHFYDDSKGT 329

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  ++  A+  +             + G + +        +      +   ++  V+  G
Sbjct: 330 NIDAVMRAVQSI-------NRPVFLIAGGVDKGASYVAWLN------VFKGHVKKVYAIG 376

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                ++  L   I V     +D           +GD V++    +S             
Sbjct: 377 QAANKIQKELSLHIRVQIEANLDDAVKQAYQDAKEGDAVLLSPGCASFDMFKDYIHRGEE 436

Query: 457 FYRLINLL 464
           F RL+ LL
Sbjct: 437 FKRLVKLL 444


>gi|73542668|ref|YP_297188.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
 gi|72120081|gb|AAZ62344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Ralstonia eutropha JMP134]
          Length = 520

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 86/496 (17%), Positives = 151/496 (30%), Gaps = 56/496 (11%)

Query: 2   NPLWTFHDLLQAIQGHS---IGIVPQGFVNGISIDSRSIAPQEAFFAIK-GP---HYDGH 54
            PL       QA    +     +     + G   D+R +A  + F A   G      DG 
Sbjct: 4   KPLLPLEVTAQASDALAWLRTKVPASARLTG---DTRRLARGDVFLAYVLGNERLSTDGR 60

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIA 112
             I  A+  GAG ++   D        ++P   ++ +      +A            +  
Sbjct: 61  PHIAQAIAAGAGAILYEADGFDWTFGDTVPHLALNSLHQLAGPIAAGWYGNPARGVAVTG 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF------- 165
           +TG+ GKT+  + L   L +     A IG+     G P  L          +        
Sbjct: 121 MTGTNGKTSCSQWLARLLQATGTPCATIGTLGT--GFPDALQPTGFTTPDAVQLQASLAS 178

Query: 166 ---------ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                     + +S  G  +         +AV+T +   HL     + E  +AKA +F  
Sbjct: 179 LHDAGARAVAMEVSSHGLEQERVAGTHFSVAVLTNLTQDHLDYHGTMAEYEAAKARLFRW 238

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN----------ADFQLRKWKQC 266
                 +    D     LL +   A+    +  +G                 +    +  
Sbjct: 239 DGLRTAVINRDDGMGRRLLASNGAAIAAPHVIEYGIDGPARASISGARGQWLRASGVRAT 298

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  +   +     S +V    IG     N+L  LG         D A+ AL    P +GR
Sbjct: 299 ATGTAFHIDGSFGSADVATPMIGAFNVSNLLAVLGAALANGVAWDAALAALRALSPVDGR 358

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + +     Q     + + Y   P +++  +  L  ++    GR   V G     G    
Sbjct: 359 MELFGAHAGQDGPLAVVD-YAHTPDALEKTLEALRPVAQARNGRLWCVFG----CGGDRD 413

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFI 437
                L   ++      + L+  +           A+ D +         E      L+ 
Sbjct: 414 PIKRPLMGGVAERLADEIVLTSDNPRSEDPQDILDAIADGMADRARGRQIEDRAAAILYA 473

Query: 438 QSSLVDGDVVVV--KS 451
                  DVV+V  K 
Sbjct: 474 IKHAAGADVVLVAGKG 489


>gi|148358649|ref|YP_001249856.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|296108261|ref|YP_003619962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280422|gb|ABQ54510.1| UDP-N-muramoylalanine-D-glutamate ligase [Legionella pneumophila
           str. Corby]
 gi|295650163|gb|ADG26010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 447

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 125/356 (35%), Gaps = 29/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P +A I  + P HL     +E    AK  I
Sbjct: 148 LDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G +       +                      SFGK   +        +    +++ 
Sbjct: 204 YSGAKAVLFNREDVYT------VPHQSCQADIKCISFGKDAPS-MGNWGLIEQENTTYLA 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++           G H   N L    +       +   +  L  F     R +  R  
Sbjct: 257 KGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +    IS ++ I    +G+ + + G     G+   +   +LA
Sbjct: 317 DGVG---WINDSKGTNIGAT---ISAINGIGGSMQGKIVLIAG-----GQGKGADFQELA 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +S + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 366 QPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|6634664|emb|CAB64530.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++ Q +     I I     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIQEVAQVVGVKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|326568238|gb|EGE18320.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC8]
          Length = 520

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 131/464 (28%), Gaps = 52/464 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-------GHDFILHAVQKGAGLVVVNTDMVA-SI 78
            +   +DSR I   + F  +K    D        + +++      A  V+   D+V   +
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLDL 99

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +  
Sbjct: 100 DGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASG 159

Query: 135 KTY-ACIGSYNNHIG-------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +      + N  +G             +  T           +  L  S  G  ++   
Sbjct: 160 ISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQ 219

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T ++  HL   + +     AKA++F+        F   +      L     
Sbjct: 220 GVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEA 279

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      YS         Q       ++     +      ++     +        L  +
Sbjct: 280 ADFQIIGYS--------QQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNV 331

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +    A       A +   P      +      Q   +           +  A   VL
Sbjct: 332 DNLLASMAAFTALNPARAADLPNLITQLQGARGRMQRASSQTGAFIIDYAHTPDALKQVL 391

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           S +  H  GR IAV G     G               L     V L+  +          
Sbjct: 392 SSLRRHCTGRLIAVFG----CGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 413 -ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  L    H  +               +    D+VV+  K 
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKG 491


>gi|326564323|gb|EGE14553.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 103P14B1]
 gi|326565088|gb|EGE15281.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 46P47B1]
 gi|326569939|gb|EGE19986.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC1]
 gi|326570017|gb|EGE20063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis BC7]
 gi|326573677|gb|EGE23635.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis O35E]
 gi|326574700|gb|EGE24636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis 101P30B1]
          Length = 520

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 73/464 (15%), Positives = 131/464 (28%), Gaps = 52/464 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-------GHDFILHAVQKGAGLVVVNTDMVA-SI 78
            +   +DSR I   + F  +K    D        + +++      A  V+   D+V   +
Sbjct: 41  FDQFCLDSRKIGTDDGFVLLKSSRQDAQTNLNNANRYLMSVKDS-AAFVISEFDLVGLDL 99

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +  
Sbjct: 100 DGIQIPIVSVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASG 159

Query: 135 KTY-ACIGSYNNHIG-------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +      + N  +G             +  T           +  L  S  G  ++   
Sbjct: 160 ISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQ 219

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T ++  HL   + +     AKA++F+        F   +      L     
Sbjct: 220 GVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEA 279

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      YS         Q       ++     +      ++     +        L  +
Sbjct: 280 ADFQIIGYS--------QQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNV 331

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +    A       A +   P      +      Q   +           +  A   VL
Sbjct: 332 DNLLASMAAFTALNPARAADLPNLITQLQGARGRMQRASSQTGAFIIDYAHTPDALKQVL 391

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           S +  H  GR IAV G     G               L     V L+  +          
Sbjct: 392 SSLRRHCTGRLIAVFG----CGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 413 -ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  L    H  +               +    D+VV+  K 
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKG 491


>gi|195953887|ref|YP_002122177.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
 gi|254766052|sp|B4U609|MURD_HYDS0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195933499|gb|ACG58199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 411

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 116/380 (30%), Gaps = 59/380 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +LA          IIA+TG+ GK+TT  ++    S              + G P +   
Sbjct: 75  TELAYRFYK--GKNIIAVTGTDGKSTTVHLIHHFTS---------FKEGGNFGTPFSEIV 123

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D +    E        +       RP++ V    +  HL     +E+   +K +IF+
Sbjct: 124 LDNDKENVALEASSFQGKTLD----TFRPNVGVFLNFSKDHLDWHPSLEDYLLSKQKIFK 179

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +   + LN                 +     FG++ +            E     + 
Sbjct: 180 NQTQEDILILNAQKPV-------CDTPSLAKKIFFGENGDLKVVGSDVYYKDELLIENIS 232

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                     +        N+ +   +   +   ++   K L  F     R    +   N
Sbjct: 233 HPSLKGLHNLY--------NIAVASFVAFSMGISLEEIKKNLETFEALPFRY---QYLGN 281

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + ++S +    ++ +A+          +   + + G + + G+ S          
Sbjct: 282 FEGIDICNDSKSTTVNALMSALES-------TKAPILLIAGGIDKGGDFSSIE------- 327

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
                I  V+L G     +KD +   + V+  E ++   L ++     GD ++     +S
Sbjct: 328 AYKDKIKAVFLYGKDKNLIKDQIEHFLKVYVLEDLESALLKVKEQARKGDTILFSPACAS 387

Query: 453 ---------NSCGFYRLINL 463
                        F  L+  
Sbjct: 388 FDMFESYKHRGEVFNELVKK 407


>gi|6634646|emb|CAB64518.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA   + +
Sbjct: 62 GAAATLSD 69


>gi|227524711|ref|ZP_03954760.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088195|gb|EEI23507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus hilgardii ATCC 8290]
          Length = 514

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/473 (13%), Positives = 134/473 (28%), Gaps = 62/473 (13%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
                 ++ +S+ ++    FF  KG ++    ++  A Q+GA   V          +++I
Sbjct: 31  DQSFQSVAYNSKVVSDNCLFFC-KG-NF-REAYLADAQQRGASGYVSEKQY----HNVTI 83

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----- 136
           P   V ++  +++ L+ A     ++    IA TG+ GKTT+       L  +        
Sbjct: 84  PGIIVKNIQKSMSLLSAAFFGFPQNSLPTIAYTGTKGKTTSAYFTKSILDKVYDRKVALF 143

Query: 137 --------YACIGSYNNHIGVPLT---LARMPVDVDFGIFELGM--SHLGEIRFLTHLVR 183
                           + +  P +      M   V   +  L M  S     +   + +R
Sbjct: 144 STINTVVGNKSEDVIKSSLTTPESLDLFTNMNKAVQNNMTHLIMEVSSQAYKKQRVYNLR 203

Query: 184 PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + V   I+P H+         +    K ++    +K      +            +  
Sbjct: 204 YDVGVFLNISPDHIGRNEHPTFADYLHCKEQLLVNSKKCVINADSDHMVDVYYTAKATSQ 263

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG------------KSMEVVHHGIG 289
                +Y    S   +   + ++  S    +                            G
Sbjct: 264 PEDIFVYHRKGSTMNEQLPKDFEYQSLADSLSENKIQLISVSDKAKQLGIDGTYEISIAG 323

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N +      +++ A        LS                 +   T+  + Y  N
Sbjct: 324 DYNEGNAVSAAITSAMMGAHPTEIEYGLSHTTVPGR----MEIYSTKQHGTIYVD-YAHN 378

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
             S+ + +  L       +G  I + G   + G   +     L + ++         +  
Sbjct: 379 YGSLHSVLDFLK--KQSPDGNVIVITGSTGDKGIDRREG---LGKAINESANVAYLTTDD 433

Query: 409 ---FHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + D +     P  +   Y                 GD+VVV  K 
Sbjct: 434 PATEDPKVIADEIAAYIDPARVKTSYIADRTSAIQKAVLESKQGDLVVVAGKG 486


>gi|289677694|ref|ZP_06498584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. syringae FF5]
          Length = 435

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 135/418 (32%), Gaps = 43/418 (10%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119
           ++GA  V    +    +    +P+  V  +   L+ +A            ++ +TG+ GK
Sbjct: 1   KRGAAAVAYEVEGSIVLPITDVPLIPVKGLAAQLSAIAGRFYGDSSRSLNLVGVTGTNGK 60

Query: 120 TTTKEMLTIALSSIKKTY---------ACIGSYNNHIGVPLTL------ARMPVDVDFGI 164
           T+  +++  AL ++ +                 +     P  +        +       +
Sbjct: 61  TSVTQLVAQALDALGQRCGIVGTLGTGFYGSLQSGRHTTPDPIAVQATLTDLRQAGARAV 120

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S  G  +     +   +AV+T ++  HL     +E  A+AKA++           
Sbjct: 121 A-MEVSSHGLDQGRAAALAFDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPDLKCRV 178

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD F   L A      + T         A    R  K   +     +        + 
Sbjct: 179 INLDDDFGRELAAVKQESRLITY--SQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLR 236

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  +G +  L   +D  +KAL       GR +R   A           
Sbjct: 237 SSLLGRFNLSNVLAAVGALLGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAH 296

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +A          VL  + PH +GR + + G     G         L   +       V
Sbjct: 297 TPDA-------LEKVLEALRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGV 345

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           W++  +            ++     +  V + E        + +S    DVVV+  K 
Sbjct: 346 WVTDDNPRSESPVSIFDDIRPGFVAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 403


>gi|313903885|ref|ZP_07837274.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313466073|gb|EFR61598.1| Mur ligase middle domain protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 610

 Score = 78.7 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 18/216 (8%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
           LLQ +     G     +V  I   S  + P + F AI G  +DG  F   A+++GA  VV
Sbjct: 8   LLQGLSFSLSGEPLPPWVGEIRSHSARVEPGDLFVAIPGRRHDGAAFAGEALRRGAR-VV 66

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT----------------IIAI 113
           V            +    V     AL++LA                          ++  
Sbjct: 67  VAQQPPGQPLPPGVSWLQVPCARSALSRLAANRYGHPSRRLVVVGVTGTTGKTTTTLLLH 126

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
                      ++                            R+  D    +  + +S  G
Sbjct: 127 HLLSATGIPAGLIGSLEVRAGGHCWPGNLTTPDPLDLHRYLRVMADAGCRVAVMEVSSQG 186

Query: 174 EIRFLTHLVRPHIAVITTIAP-AHLSNFSGIEEIAS 208
             +     V   + V+T +AP  HL      E+ A+
Sbjct: 187 ADQRRVDDVAFDLGVVTNLAPLEHLEYHPTYEDYAA 222


>gi|167580468|ref|ZP_02373342.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis TXDOH]
          Length = 514

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/481 (14%), Positives = 147/481 (30%), Gaps = 51/481 (10%)

Query: 8   HDLLQAI---QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAV 61
             +  A+   + H            +  D+RS+   + F A      DG D   FI  A+
Sbjct: 12  QQIAAALAWLRAHVASGAQ------LHADTRSLQAGDVFVAYA---VDGADNRPFIADAL 62

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
            +GA  V+   +   + G        V  +      +A             + +TG+ GK
Sbjct: 63  ARGAAAVLYQPEGFPAAGLDPATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGK 122

Query: 120 TTTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIF 165
           T+  + +  AL+++++                + +       P     +    D      
Sbjct: 123 TSCTQWIAAALTALREPCAVIGTLGSGMPGQLVHTGFTTPDAPQLQRSLAQLRDAGAQAV 182

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            + +S     +   +     +AV T +   HL      +   +AKA++F        +  
Sbjct: 183 AMEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLHCAVVN 242

Query: 226 NYDDSFFELLKAKSHALGIKTI----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             D +   LL   +  +          +     + +      +  +  +   V       
Sbjct: 243 RDDPAGRRLLANLAGRVRTIAYGIDAPAQAADADRELVATNVRATATGTAFRVTSPWGEA 302

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  +       GR +R    L      +
Sbjct: 303 DVEVGTLGTFNVSNLLAVLGTLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLV 362

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    G  + + G     G    +    L   ++    
Sbjct: 363 VVD-YAHTPDALEKTLEALRPIAQARGGELVCMFG----CGGDRDATKRPLMGAIAERLA 417

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +  + +    E      L         DVV++  K
Sbjct: 418 DKVVVTSDNPRSEEPQKIIDQIVAGMRDAANARRVEDRASAILQAVRGAAREDVVLLAGK 477

Query: 451 S 451
            
Sbjct: 478 G 478


>gi|302877576|ref|YP_003846140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
 gi|302580365|gb|ADL54376.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Gallionella
           capsiferriformans ES-2]
          Length = 463

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 78/430 (18%), Positives = 139/430 (32%), Gaps = 50/430 (11%)

Query: 33  DSRSIAPQ-----------EAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           DSR+  P            + FF A     +DG + I  A+  G  L       +A   +
Sbjct: 36  DSRTTPPGLDQVAQFVPADQLFFGAFTDTLFDGIELI--AISPGVPLA---DPYIARAAA 90

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             IPV  V D+     +L  +        ++AITGS GKTT   ++     +        
Sbjct: 91  RGIPV--VGDIELFAQQLRASHAP-LPGKVLAITGSNGKTTVTSLVEHLCRAAGLDAV-A 146

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
               +   + + L R     +  + EL    L      T  +    A +  ++  HL  +
Sbjct: 147 AGNISPAVLDVVLQRGDKQPEVWVLELSSFQL----ETTRSLTADAATVLNVSEDHLDRY 202

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            G++E A+AK +I  G         +         ++ +         SFG +K A    
Sbjct: 203 LGMDEYAAAKQQILGGCRLQVLNRDDA--------RSIAMKHTTSDCVSFGLNKPASESD 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++  +  W+                G H   N L  L +   +   +   + AL  F
Sbjct: 255 FGIEREGDDIWLVQGCSRLIKASEMQLAGLHNVANALAALALCRAIDLPMPVLLAALRSF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R             T  D+S   N  +  AA++ L   +         + G + +
Sbjct: 315 KGLPHRV---EKVAVLHGVTFYDDSKGTNVGATVAALAGLGCPAV-------LIAGGVGK 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQS 439
             + S        +    ++   V L G     +  AL    + + ++  M         
Sbjct: 365 EQDFSP------LKSAVTHHARAVVLIGRDAPLIAAALAGGDVPLIHAADMQDAVQLAAK 418

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 419 IAQYGDAVLL 428


>gi|325275017|ref|ZP_08141010.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
 gi|324099845|gb|EGB97698.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas sp. TJI-51]
          Length = 419

 Score = 78.4 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 137/409 (33%), Gaps = 28/409 (6%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +  +++DSR++ P + F A+ G   DG   I  A+ +GA  V         +    +
Sbjct: 15  DPMIRELTLDSRNVRPGDLFLAVPGAKVDGRGHIADALARGAAAVAYEEQGANVLPLTDV 74

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P+  V  ++  L+ +A            ++ +TG+ GKT+  ++L  AL  + K    IG
Sbjct: 75  PLIPVKGLIAQLSDIAGRFYGEPSRQLDLVGVTGTNGKTSVTQLLAQALELLGKRCGLIG 134

Query: 142 SYNNHIGVPLTLARMPVDVDFGIF--------------ELGMSHLGEIRFLTHLVRPHIA 187
           +        L   R+       +                + +S     +     +   IA
Sbjct: 135 TLGTGFYGELQSGRLTTPDPIAVQSTLYGLKKAGAKAVAMEVSSHALEQGRVAALAFDIA 194

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD---DSFFELLKAKSHALGI 244
           V+T ++  HL     ++   +AKA++F        +    D       +    ++ A  I
Sbjct: 195 VMTNLSRDHLDYHGSMQAYEAAKAKLFAWPSLRCQVVNLDDEFGRRLAQAFADRAPADPI 254

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           ++       +N D  L   K   +   +   L     E +             M   + +
Sbjct: 255 ESRLLSYSLENRDADLFCTKAAFDDHGVRATLVTAQGERILRSQLLGRFNLSNMLAAVAT 314

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L  D         +   +   G+  R         ++D ++  +         VL  + 
Sbjct: 315 LLAMDFALDEILSVIPKLQGPVGRMQRLGGGAKPLVVVDYAHTPDALE-----KVLEALR 369

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           PH  G+ + + G     G         L   ++      V ++  +  +
Sbjct: 370 PHAHGQLLCLFG----CGGDRDRGKRPLMAEVAERLADRVLVTDDNPRS 414


>gi|313206533|ref|YP_004045710.1| udp-n-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|312445849|gb|ADQ82204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer DSM 15868]
 gi|315023526|gb|EFT36530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Riemerella
           anatipestifer RA-YM]
 gi|325336018|gb|ADZ12292.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Riemerella
           anatipestifer RA-GD]
          Length = 441

 Score = 78.4 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 109/345 (31%), Gaps = 31/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+AITGS GKTTT  ++   L               +IG            D+ + E
Sbjct: 100 NAKIVAITGSNGKTTTTSLIYHILKDNGMNV----GLGGNIGKSFAKQVADESFDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L          RP+I+++  ++  HL  ++   EE A AK  I E  E       
Sbjct: 156 ISSFQLD----DIQNFRPYISLLLNLSQDHLDQYNYNYEEYALAKFRITENQEYDNFFIY 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + +  +      K  +S  ++ +    +       +              +  
Sbjct: 212 NKDDEMSQKILQELDLKVKKVPFSIKETLSEGGYMNDENIVVKFQGEF--------TMKI 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L           +     +     +    R +   N      I++S
Sbjct: 264 RDLALIGNHNVANSLAASIAGKILNISNESIRNSLMTFQAVDHRLQEIANLNGVKFINDS 323

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++Q +    G            G    + + ++ E L    +  + 
Sbjct: 324 KATNVNATYYALESMTQPTVWIVG------------GVDKGNDYTEI-EELVKKKVKAIV 370

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             G     + D         Y + +M+      +S    GD V++
Sbjct: 371 CLGIDNQKIIDFFRDKKEFIYNTSSMEEAIKISKSIAEAGDAVLL 415


>gi|54295453|ref|YP_127868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Legionella
           pneumophila str. Lens]
 gi|62900487|sp|Q5WTI5|MURD_LEGPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53755285|emb|CAH16779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila str. Lens]
          Length = 447

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 29/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P +A I  + P HL     +E    AK  I
Sbjct: 148 LDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G +       +                      SFGK   +        +     ++ 
Sbjct: 204 YRGAKAVLFNREDVYT------VPHQSCQADIKCISFGKDAPS-MGNWGLIEQENTIYLA 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++           G H   N L    +       +   +  L  F     R +  R  
Sbjct: 257 KGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +    IS ++ I    +G+ + + G     G+   +   +LA
Sbjct: 317 DGVG---WINDSKGTNIGAT---ISAINGIGGSMQGKIVLIAG-----GQGKGADFQELA 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +S + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 366 QPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|167838009|ref|ZP_02464868.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia thailandensis MSMB43]
          Length = 514

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 145/455 (31%), Gaps = 46/455 (10%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           D+RS+   + F A      DG D   FI  A+ +GA  V+   +   + G        V 
Sbjct: 34  DTRSLRAGDVFVAYA---VDGADNRPFIADALARGAAAVLYQPEGFPAGGLDPATSLAVP 90

Query: 90  DVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
            +      +A             + +TG+ GKT+  + +  AL+++++  A IG+  +  
Sbjct: 91  ALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSCTQWIAAALTALREPCAVIGTLGS-- 148

Query: 148 GVPLTLARMPVDVDFG----------------IFELGMSHLGEIRFLTHLVRPHIAVITT 191
           G+P  L                             + +S     +   +     +AV T 
Sbjct: 149 GLPGQLVHTGFTTPDAPQLQRSLAQLRGAGAQAVAMEVSSHALHQGRVNGTAFDVAVFTN 208

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      +   +AKA++F        I    D     LL   +  +         
Sbjct: 209 LTQDHLDYHRTFDAYEAAKAKLFAWRGLRCAIVNRDDPVGRRLLANLAGRVRTIAYGIDA 268

Query: 252 KSKNADFQL----RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           + + AD          +  +  +   +       +V    +G     N+L  LG +    
Sbjct: 269 RRQAADADRELVATNVRATATGTAFRLTSPWGEADVEVGTLGTFNVSNLLAVLGTLLAAD 328

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D A+  +       GR +R    L      ++ + Y   P +++  +  L  I+   
Sbjct: 329 VPFDAALAEIEKLESVNGRMQRLGGRLQNDEPLVVVD-YAHTPDALEKTLDALRPIAQAR 387

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDAL 418
            G  + + G     G    +    L   ++      V ++  +  +         +   +
Sbjct: 388 GGELVCMFG----CGGDRDATKRPLMGAIAERLADKVVVTSDNPRSEDPQKIIDQIVAGM 443

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             + +    E      L         DVV++  K 
Sbjct: 444 QDAANARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|6634640|emb|CAB64514.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
 gi|6634652|emb|CAB64522.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     + +     +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDVSLFADAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|307611494|emb|CBX01167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Legionella
           pneumophila 130b]
          Length = 447

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 124/356 (34%), Gaps = 29/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              +   AR    A +IAITG+ GK+T   ++     +         +   +IG P+   
Sbjct: 93  YGDIECLARE-ISAPVIAITGTNGKSTVTTLVGEMAKAAGFRV----AVAGNIGTPVLDM 147

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D  + EL    L     LT+ + P +A I  + P HL     +E    AK  I
Sbjct: 148 LDDEHHYDLWVLELSSFQLD----LTYSLSPVVATILNVTPDHLDRHHTMEAYTQAKQRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G +       +                      SFGK   +        +     ++ 
Sbjct: 204 YRGAKAVLFNREDVYT------VPHQSCQADIKCISFGKDAPS-MGNWGLIEQENTIYLA 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             ++           G H   N L    +       +   +  L  F     R +  R  
Sbjct: 257 KGMERLLPVESILIKGVHNWMNALAACALAEAAGISMQHILNVLKTFPGLPHRCQWVREV 316

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  +    IS ++ I    +G+ + + G     G+   +   +LA
Sbjct: 317 DGVG---WINDSKGTNIGAT---ISAINGIGGSMQGKIVLIAG-----GQGKGADFQELA 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +S + +  + L G     ++ AL + + V  + +++G     ++    GDVV++
Sbjct: 366 QPVSEF-VRSIVLIGEDADKIESALAKVVPVVRASSLEGAVTIAKTCAKPGDVVLL 420


>gi|282862740|ref|ZP_06271801.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
 gi|282562426|gb|EFB67967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Streptomyces sp. ACTE]
          Length = 490

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 80/493 (16%), Positives = 149/493 (30%), Gaps = 73/493 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQ-GFVN-GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               +LL     H +   P+  +++ G + D+  + P   F A+ G            V+
Sbjct: 1   MKLSELLAGHDHHVLQGDPERAWISAGTAFDADRVTPGSLFIAVPGH-----------VE 49

Query: 63  KGAGL-----------VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KAT 109
            G G            V+V+ D V    +    V  V D   A   +          +  
Sbjct: 50  GGPGAVAPALARGAAAVMVDADCVLPAAARDACVVRVADTRTAAALVTARYFGEPGRQMD 109

Query: 110 IIAITGSVGKTTTKEML----------------TIALSSIKKTYACIGSYNNHIGVPLTL 153
           ++AITG+ GKT+   M+                T       +      S       P   
Sbjct: 110 VVAITGTNGKTSVSYMVESVLRISEGTRAGVIGTAGSRIGDEPIPMPPSVLTTPETPDLQ 169

Query: 154 ARMPVDVDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             +    D G+    L  + +G +          + V T ++  HL +   +E    AK 
Sbjct: 170 YLLGCMRDRGVRSVVLEATSMGLLTHRVDRTFVDVGVFTNLSQDHLDDHGTMENYRDAKL 229

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +F+G      +  +   +  + + A   A+    + ++     AD++       +  S 
Sbjct: 230 RLFQG------LCRHAVVNVDDPVGAGIQAMMPGAVTTYALDAEADYRATDLVVDAAGSR 283

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +  +G+         G     N L T+    +L  D+   + AL       GR +R  
Sbjct: 284 FTLHHEGRKYPAAIPSPGRFSVANALATVAACHVLGHDLTGLVAALERMPQIPGRFERLT 343

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A                  S  +   VL  +     GR + V G     G    +    
Sbjct: 344 TAAGTSVIVDYA-------HSPDSLNKVLGTVRGFARGRVVTVFG----CGGDRDTTKRA 392

Query: 392 LAEVLSLYNISHVWLSG-----FHVLALKDALPRSIHV-----HYSETMDGLFLFIQSSL 441
               ++  +     L+           + D +   I V                F  S+ 
Sbjct: 393 EMGTIAGTHSDLCVLTSDNPRHEDPEDIMDQVAPGIAVTGTPYERIADRHAAIAFALSAA 452

Query: 442 VDGDVVVV--KSS 452
              D++++  K S
Sbjct: 453 GPDDIILIAGKGS 465


>gi|332881748|ref|ZP_08449396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332680387|gb|EGJ53336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 79/408 (19%), Positives = 131/408 (32%), Gaps = 53/408 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV  + +  IP+          +++  A R  + A +I ITGS GKTTT  ++    
Sbjct: 76  DAPMVLKVKAAGIPII---------SEIEFAGR-YTHAKMICITGSNGKTTTTSLIYHIF 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG  L L     D D+ + EL    L       +  R +IAV+ 
Sbjct: 126 KKAGYNV----GLAGNIGQSLALQVAEKDYDYYVIELSSFQLD----NMYRFRANIAVLL 177

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +   ++    AK  I +  E+T       DD        K      K  +S
Sbjct: 178 NITPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFS 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K +     L   +   E             +      G H   N L       I    
Sbjct: 238 ILKKEGMIGYLADGQYVIE-----YPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVK 292

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   ++L  F   E R       +       I++S   N  +   A+  +         
Sbjct: 293 NEVIRQSLGDFEGVEHRL---EKVVRVRGVDYINDSKATNVDACWYALESMKT------- 342

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             + +LG     G+   + +  +AE++    +  V+L G     L D      I +  + 
Sbjct: 343 PTVLILG-----GKDKGNDYEAIAELVRKKCVGLVFL-GADNRKLHDFFDSFGIPIADTH 396

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +M             GD V++    +S             F  L+  L
Sbjct: 397 SMKDCVEACYRMARPGDTVLLSPCCASFDLFKNMEDRGEQFKSLVRAL 444


>gi|226951755|ref|ZP_03822219.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
 gi|226837545|gb|EEH69928.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           ATCC 27244]
          Length = 452

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 72/436 (16%), Positives = 135/436 (30%), Gaps = 66/436 (15%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK--G---------AGLVVVNTDMVASIG 79
             DSR   P             GHD I   ++K  G         A  ++++  +   + 
Sbjct: 34  VTDSRETPP-------------GHDQIPENIKKSFGKLDLDLLLQAEEIILSPGLAPQLP 80

Query: 80  S------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
                    IPV    D+           R  +   I+AITGS  K+T   +  +     
Sbjct: 81  EIQQALEKGIPVI--SDIQLL--------RRATDVPIVAITGSNAKSTVTTLFGLMAKDA 130

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            K      +   ++G P     +    +  + EL    L     L       +AV+  ++
Sbjct: 131 GKKV----AVGGNLGRPALDL-LKDQPELIVLELSSFQLETTSHLNA----EVAVLLNMS 181

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     +     AK  IF+G++K             +   ++     +  + SFG +
Sbjct: 182 EDHLDRHGDMLGYHKAKHRIFQGVKKVVYNR--------DDSLSRPLVPDVTPMQSFGLN 233

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                Q    ++     W+    +        +  G H   N L  L +   +     + 
Sbjct: 234 APDMNQYGVLREADGSMWLARGRERLIKTSDLYIQGMHNVANALACLALGEAIGLPTQSM 293

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           ++ L  F   E R                ++S   N  +  AAI  L        G+   
Sbjct: 294 LETLQQFKGLEHRC---EYVQTVDQVRYYNDSKGTNVGATLAAIEGLGAAIEAKHGKLAL 350

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LG   +  +                 +  V L G     ++ AL  +  + ++ ++   
Sbjct: 351 ILGGQGKGQDFKP------LRNAIQKYVKTVILIGEDAAMIEQALHNTTQIQHASSLKQA 404

Query: 434 FLFIQSSLVDGDVVVV 449
                 +    DVV++
Sbjct: 405 VDIAHQATQAEDVVLL 420


>gi|149183982|ref|ZP_01862354.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848308|gb|EDL62586.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 413

 Score = 78.0 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 126/397 (31%), Gaps = 42/397 (10%)

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKK----- 135
             +  V D   A+ +L             +I +TG+ GKTT   ++   L +  +     
Sbjct: 1   AALVVVKDTFKAMAQLVNKYYDYPSLKMNVIGVTGTNGKTTVTNLIHSILRNDGQRSALS 60

Query: 136 -----------TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                        +   + +      +    +  D++  + E+  S  G        V  
Sbjct: 61  GTIGFDLDGELFPSENTTCDVMTNQEMIQKALDRDIENMVLEV--SSHGLSLGRLWGVDF 118

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +   T ++  HL     +E    AK  +F  L +          +  +    +   +  
Sbjct: 119 DVVTFTNLSHDHLDYHQTMEHYGYAKGLLFSQLGQNLANPKYAVLNSDDEWYERYSTMTA 178

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + S+G    ADF+    +  ++ +   +Q      EV    +G     N+L  +  + 
Sbjct: 179 HEVISYGLETYADFKAENIQYYNDLTTFTLQSPEGVFEVESKLLGKFNVYNILAAMATLF 238

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+  +  +    P  GR ++         +     + +A         + +  + 
Sbjct: 239 AKGMSVEKLVTIIKDLPPVSGRMEKVHSDAPLSMYIDYAHTPDA-------IENAIQSVL 291

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALP 419
           P  E + I ++G     G   +S    +AE        +V L+           + + L 
Sbjct: 292 PFKENKIIFLVGT---GGNRDKSKRPSMAEKA--SIADYVVLTTDDPRYESYDSIVNDLG 346

Query: 420 RSI-HVHYS--ETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + H +Y+     +            GD+++   K 
Sbjct: 347 KGMRHGNYALIGDREEAVKHAVDVSEPGDIIIFAGKG 383


>gi|298372208|ref|ZP_06982198.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
 gi|298275112|gb|EFI16663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroidetes
           oral taxon 274 str. F0058]
          Length = 468

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 121/412 (29%), Gaps = 51/412 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            ++ S+    IPV        +  + A      + A  I ITGS GKTTT  +    L +
Sbjct: 88  PIIKSLREKGIPVI-------SEIEFAGRY---TNAKTICITGSNGKTTTTMLTYHILRN 137

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        ++G    +     + D+ I E+    L       +  R  IA+IT I
Sbjct: 138 AGYNV----GLAGNVGKSFAMQVAEDNFDYYILEISSFQLD----GMYSFRADIAIITNI 189

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +    +    +K  I +   +         DS       K           F 
Sbjct: 190 TPDHLDRYDYKFQNYVDSKFRILQNQTENDFFIFWAGDSTVANEIEKRGTSIKARKIPFD 249

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            +   D          +            +E+  + +      N+  ++           
Sbjct: 250 LTSQTDNVPNYAFVDGKDIIFNNLTNKLFLEMETNNLPLKGNHNLYNSMAAGLASQVAGV 309

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           +           EG   R            I++S   N  S   A+  ++          
Sbjct: 310 SKDAIRRSLETFEGVEHRMEYVATVRGVRYINDSKATNVNSCWYALQSMTT-------PV 362

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-----PRSIHVHY 426
           + +LG     G    + + D++E++S   + H+   G     L              + Y
Sbjct: 363 VLILG-----GTDKGNDYSDISELVSDR-VHHLIFLGVDNDKLIKFFGCHRNKEGKKIPY 416

Query: 427 SE--TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           SE  +M+           +GD V++    +S             F   +  L
Sbjct: 417 SEARSMEECVQQAYKVAKNGDTVLLSPCCASFDLFNNYEDRGRQFKEAVRHL 468


>gi|58584749|ref|YP_198322.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419065|gb|AAW71080.1| UDP-N-acetylmuramyl tripeptide synthase [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 496

 Score = 78.0 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/475 (12%), Positives = 128/475 (26%), Gaps = 58/475 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIK--GPHYDGHDFILHAVQ 62
              L                  + G++ + + +     F  +   G    G       ++
Sbjct: 23  IQQLALHTGITLGNCTVDFNIEIKGVTCNPKKVKEDYLFVCVSEEGERCVGG------IK 76

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII-AITGSVGKTT 121
             A  ++ +   + + G+         +      K+        +   + A+TG+ GKT+
Sbjct: 77  --ASAIIASFSAIPAQGAEI--YIFYPNPREIYGKIVSRFYQFKQLKCVAAVTGTNGKTS 132

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF---------------- 165
             E       +     A +G+    +          +                       
Sbjct: 133 VVEFCRQIWQNAGCNAASVGTLGTCVNNERKDNNSNLTTPDADDLYFTLRDVNSKNIEHL 192

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L  S  G  ++  H +  + A  T  +  HL     + E   AK  +F  +   G   +
Sbjct: 193 ALEASSHGIDQYRIHGLELNAAAFTNFSQDHLDYHKDVNEYFEAKKRLFYEVLPEGKTVV 252

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D        K        + ++GK   +D  L +     +   + +++  +   + +
Sbjct: 253 LNSDIDEYYALLKIAEKRSNKVITYGK-TGSDITLLRQIPTPDGQHLTIKIGDEVYGMFY 311

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+L  +GIV     D         V  P                F  +D +
Sbjct: 312 PVLGQFQAYNLLCAIGIVIASKLDYQRICIDKFVSLP--------GRMEKVKPFAFVDYA 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +          L  +  H   + + V G     G             ++      V 
Sbjct: 364 HTPSA-----LKQALLSLKWHFSKKVVLVFG----CGGNRDQAKRAKMGKMAKMYADKVI 414

Query: 406 LSGFH------VLALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
           ++  +           D L    +               +    +  V++V  K 
Sbjct: 415 VTDDNPRDEDPAKIRYDILLCCPNALEVGDRREAIKKGINIAYDENMVLLVAGKG 469


>gi|108800227|ref|YP_640424.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119869355|ref|YP_939307.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
 gi|108770646|gb|ABG09368.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. MCS]
 gi|119695444|gb|ABL92517.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. KMS]
          Length = 508

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 80/478 (16%), Positives = 141/478 (29%), Gaps = 45/478 (9%)

Query: 7   FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              L + +Q        VP   V G+++  +   P + F A+ G    G  F+  AV  G
Sbjct: 15  LGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAHGARFVADAVAAG 74

Query: 65  AGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           A  V+ +      +G    +PV    D    L  +A            ++ +TG+ GKTT
Sbjct: 75  AVAVLTDAAGAVMLGADPVVPVLVHPDPRAVLGAVASTVYGHPSQHLRVVGVTGTSGKTT 134

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--L 167
           T  ++   L +  +    IG+    I              P   A + V V+ G+    +
Sbjct: 135 TTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQALLAVMVEQGVDTVVM 194

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S           V       T ++  HL     +E+   AKA +F+   +T       
Sbjct: 195 EVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAGLFDPQSRTRAELAVV 254

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                        A    T+ + G+   AD++    +     +   V +    +      
Sbjct: 255 CVDDDAGRAMAIRAGRAVTVSASGR--PADWRAEDVRAVEAGAQEFVAVDPAGVHHGLRI 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                       L    +   DV     A            R         F  + + Y 
Sbjct: 313 ALPGHYNVANCVLAAALLDAVDVSPEQAA--PGLRTATVPGRLEAVDRGQDFLALVD-YA 369

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P +++A +     +   G+GR   V G     G    +   +    ++      V ++
Sbjct: 370 HKPGALRAVLET---LRGQGKGRIAVVFGA----GGNRDAGKREPMGRVAAELADLVVVT 422

Query: 408 GFHVLA------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +                  A      V                   GDVV+V  K 
Sbjct: 423 DDNPRDEDPATIRAAIMAGARAAGGGADVVEIGDRREAIAHAVRWARPGDVVLVAGKG 480


>gi|6634595|emb|CAB64488.1| D-ala,D-ala adding enzyme [Streptococcus pneumoniae]
 gi|6634691|emb|CAB64540.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ QA+     + +  +  +     DSR I   + F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQAVGAKNDVSLFAEAQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + +  
Sbjct: 62 GAAVTLSE 69


>gi|153207157|ref|ZP_01945936.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165918426|ref|ZP_02218512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212219390|ref|YP_002306177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuK_Q154]
 gi|226711903|sp|B6J5K6|MURD_COXB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120576818|gb|EAX33442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           'MSU Goat Q177']
 gi|165917932|gb|EDR36536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 334]
 gi|212013652|gb|ACJ21032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuK_Q154]
          Length = 442

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 124/375 (33%), Gaps = 44/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IIAITGS GKTT   ++ + + +  +      S   +IG P+   ++  + D
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNV----SVCGNIGEPVLE-QITPEPD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+       
Sbjct: 155 YYVLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIYTDCFIPI 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                 +         K  + G+     F              + ++++ +  Q +    
Sbjct: 211 VNADEPEIWCHLPFNKKPLSFGLNNAADFSL-----------AEHNQKTSIAYQGKILMP 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                    H  QN L  L + +     ++  +  L  F     R    +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHLLRDFSGIRHRC---QWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +     + +  +    +G+ I + G   +  + S        + +    +
Sbjct: 317 YNDSKGTNVGAT---RAAIESLGQAAKGQLILIAGGQGKGADFSP------LKDVVKRYV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     L+  L     + ++++M+        +   GD+V++    +S      
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLLSPACASFDMFTN 427

Query: 453 ---NSCGFYRLINLL 464
                  F   +  L
Sbjct: 428 YEHRGDVFTETVEAL 442


>gi|167825935|ref|ZP_02457406.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 9]
 gi|226199593|ref|ZP_03795149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928339|gb|EEH24370.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pakistan 9]
          Length = 514

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 154/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      +VP   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRTHVVPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLTGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|225021921|ref|ZP_03711113.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945308|gb|EEG26517.1| hypothetical protein CORMATOL_01953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 497

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 85/481 (17%), Positives = 146/481 (30%), Gaps = 51/481 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ Q I     G   +     +  + ++S  +     F A+ G    G      A  
Sbjct: 4   TVLDVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAAD 60

Query: 63  KGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
             A  ++ +      + +     PV  VDDV   L   A A      S+ T+I ITG+ G
Sbjct: 61  TAAAAILTDEAGWGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTL---------------ARMPVDVDF 162
           KTTT  ML   L +       IG+      G P+                   +   V  
Sbjct: 121 KTTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTH 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  SH   +  +   V+  +A  T ++  HL   + + E   AKA  F     + T
Sbjct: 181 VVMEV-SSHALMLGRV-LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFR--PGSPT 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     +    K  ++    + +      A        Q  E+   E QL   S  
Sbjct: 237 RAARAVVCVDDEWGEKMASVFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFQLAAPSGS 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           VV   +      N+      +++           L         G+       Q F  ++
Sbjct: 297 VVAATVPLPGRFNVANAALALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQDFLAVV 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++           +VL+ +     GR   V+G     G         +    +     
Sbjct: 357 DYAHKPAA-----IKAVLATVRGQITGRIGLVVGA----GGDRDHSKRPIMGAEAAAGAD 407

Query: 403 HVWLSGFH----------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +V ++  +             L      S  V            + +    GD V++  K
Sbjct: 408 YVVVTDDNPRNEDPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|254180541|ref|ZP_04887139.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
 gi|184211080|gb|EDU08123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1655]
          Length = 514

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 154/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A          +  + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        I   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAIVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|239631049|ref|ZP_04674080.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|239527332|gb|EEQ66333.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei 8700:2]
          Length = 517

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 132/473 (27%), Gaps = 49/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    +     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTL----GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  + L       +   A +   +  +       G  K       +        +   +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHTKVAGHGAVYVD 374

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
            A   A++  L     H        L  +   G+   S     A+VL+ +       +  
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRL-LVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +   I      VH             S     D+VVV  K 
Sbjct: 434 PGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKG 486


>gi|167721348|ref|ZP_02404584.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei DM98]
 gi|167912657|ref|ZP_02499748.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 112]
          Length = 514

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 153/480 (31%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        I   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAIVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|6634655|emb|CAB64524.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 7  FHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           H++ Q +     + I     +     DSR I   + F  +KG   DGHDFI  A + GA
Sbjct: 5  IHEVAQVVGAKNDVSIFEDTQLEKAEFDSRLITTGDLFVPLKGAR-DGHDFIERAFENGA 63

Query: 66 GLVVVN 71
           + + +
Sbjct: 64 AVTLSD 69


>gi|139438500|ref|ZP_01772016.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
 gi|133776039|gb|EBA39859.1| Hypothetical protein COLAER_01008 [Collinsella aerofaciens ATCC
           25986]
          Length = 505

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 62/464 (13%), Positives = 117/464 (25%), Gaps = 59/464 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
              +   + DSR + P   F   KG  +   +++L A+  GA   V   D       + +
Sbjct: 33  DQRIEFATDDSRQVRPGTLFVC-KGRAFK-REYLLSAIADGAVAYVSEVDY-----DVDL 85

Query: 84  PVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT---------IALSS 132
           P   V D+   L  +A A       K  + A TG+ GK+T    L               
Sbjct: 86  PAVIVSDIRRTLAVVADAFYGHPSGKVKVCAFTGTKGKSTCSFYLRGILANEAKLTGCHR 145

Query: 133 IKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                          G                         + + E   S  G     T 
Sbjct: 146 PALNTGIEFDDGIEAGPSKLTTPESFLLQSRIAHAAEAGAPWLVME--ASSQGLKYERTG 203

Query: 181 LVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            +   +   T I   H+S      +E+  ++K +IF                      ++
Sbjct: 204 KIAFEVGAFTNIGEDHISPIEHPTLEDYFASKLKIFSQSRFAVVNLDMDKVDRVLEAASR 263

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 +T+      + AD      +         V+    + ++V          N L 
Sbjct: 264 C----ERTVTFSLTDERADVFALAIRNGDCGVVATVRTPRFTRDIVIPTPVKFNVSNALA 319

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    +L    +  +                  +            +  N  S++  + 
Sbjct: 320 AIACAEVLGISEEGIVHGFEGVFVPGRMELYPSVSGKILGIVD----FAHNGMSLETLLR 375

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLA 413
            L +  P  E     V G     G            + +      + ++        V  
Sbjct: 376 DLRENYPERE--LAVVFGATGGKGVDR----RTTMGIAAGKYADRIVITEDDPGPEDVED 429

Query: 414 LKDALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +   + R++                         V   VV+V  
Sbjct: 430 ICAEIARNVQAQGNDNWQIVTDRVAAIEAAVRETVRPAVVIVTG 473


>gi|331696615|ref|YP_004332854.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326951304|gb|AEA25001.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 501

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 80/489 (16%), Positives = 149/489 (30%), Gaps = 58/489 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQG-FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M P+     L  +              V G ++ +  + P + F A+ G    G DF   
Sbjct: 1   MRPV-DVAVLAASADAELRDPAAAVRPVTGATLRASDVRPGDLFAALPGSRAHGADFTAA 59

Query: 60  AVQKGAGLVVVNTDM--VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
           A+  GA  ++ +       ++   ++PV   +     L  LA        A   ++ +TG
Sbjct: 60  ALAAGAVAILTDPAGAAREAVAQAAVPVLVHEAPRRVLGDLAARIYGDPTARLDVVGVTG 119

Query: 116 SVGKTTTKEMLTI------------ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           + GKTT   ML                 + +   A   S       P   A   V  + G
Sbjct: 120 TSGKTTVGHMLEAGLAAGGRATGLLGTVTTRIRGAEAPSLFTTPESPDLQALFAVMAERG 179

Query: 164 IFELGM---SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLE 218
           + ++ M   SH   +  +    R  +A  T ++  HL     +++   A A         
Sbjct: 180 VTDVAMEVSSHALALDRV-AGTRFSVAAFTNLSQDHLDFHRDMDDYFEAKALLFDPSRQG 238

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +  DD +   L  +          +   +  AD+      Q  + +   V  + 
Sbjct: 239 AARRRVVCVDDEWGRRLADRHPDA-----VTVATTGPADWTAESVHQDDDGTQSFVAARP 293

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                V   +      N+   L  ++ L A    A  A          G+  R    Q F
Sbjct: 294 GGTVPV--RLRLPGRYNVANALVALACLDAAGVPAEVAAPRLAELAVPGRMQRVDAGQDF 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++           ++L+ +     GR + VLG     G         L   ++ 
Sbjct: 352 LVVVDYAHKPAA-----VGALLAALRGQVGGRIVTVLG----CGGDRDRGKRPLMGAIAA 402

Query: 399 YNISHVWLSG-----FHVLALKDALPRSIHVHYSETMDGLFLF---------IQSSLVDG 444
                + ++          A++ A+              +              ++   G
Sbjct: 403 AGSDLLVVTDDNPRTEDPAAIRRAVREGAEAE--PRRGEIVEIGDRRAAIAAAVAAARPG 460

Query: 445 DVVVV--KS 451
           D VVV  K 
Sbjct: 461 DAVVVAGKG 469


>gi|134280166|ref|ZP_01766877.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
 gi|134248173|gb|EBA48256.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 305]
          Length = 514

 Score = 77.6 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 153/480 (31%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|126452893|ref|YP_001067791.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|167847421|ref|ZP_02472929.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei B7210]
 gi|242316322|ref|ZP_04815338.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
 gi|126226535|gb|ABN90075.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106a]
 gi|242139561|gb|EES25963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1106b]
          Length = 514

 Score = 77.6 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 155/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      +VP   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRTHVVPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A          +  + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLTGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|326572875|gb|EGE22860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Moraxella catarrhalis CO72]
          Length = 520

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 71/464 (15%), Positives = 128/464 (27%), Gaps = 52/464 (11%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYD-------GHDFILHAVQKGAGLVVVN-TDMVASI 78
            +   +DSR I   + F  +K    D        + +++      A  V+         +
Sbjct: 41  FDQFCLDSRKIGADDGFVLLKSSSQDAQTSLNNANRYLMSVKDS-AAFVISELDLAGLDL 99

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIK 134
             + IP+  V ++   L  L  A            IIA+TG+ GKTT  +++     +  
Sbjct: 100 DDIQIPIISVPNIRTYLGDLIAARLQLHHAVALPKIIAVTGTNGKTTVSQLIAQLCQASG 159

Query: 135 KTY-ACIGSYNNHIG-------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
            +      + N  +G             +  T           +  L  S  G  ++   
Sbjct: 160 ISSAVMGTAGNGRLGQLIQSANTTGDVLLTHTFIHQMAQEGVQMIALEASSHGLDQYRLQ 219

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V    A+ T ++  HL   + +     AKA++F+        F   +      L     
Sbjct: 220 GVPIIGAIYTNLSRDHLDYHADMASYRDAKAKLFDQSLFPTLRFGVVNLDDEPALFDYEA 279

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A      YS         Q       ++     +      ++     +        L  +
Sbjct: 280 ADFRIIGYS--------QQKPNADFYAKAVRPSLDCVEIEVQTSQGEMTAISPLLGLFNV 331

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             +    A       A +   P      +      Q   +           +  A   VL
Sbjct: 332 DNLLASMAAFTALNPARAADLPNLITQLQGARGRMQRASSQTGAFIIDYAHTPDALKQVL 391

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           S +  H  GR IAV G     G               L     V L+  +          
Sbjct: 392 SSLRRHCTGRLIAVFG----CGGDRDRGKRPQMTQAGLAYADQVILTADNPRSESPSAIL 447

Query: 413 -ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  L    H  +               +    D+VV+  K 
Sbjct: 448 ADMQKGLSCEDHYKIIIEPDRKNAIELAVKTAGKTDIVVIAGKG 491


>gi|163786280|ref|ZP_02180728.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159878140|gb|EDP72196.1| putative UDP-N-acetylmuramoyl-tripeptide--D-alanyl-d-alanine ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 104

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            ++ L          +   LGDM E+G  +++ H  + + +       ++L G +     
Sbjct: 1   MLAALKNFKQLDAKNKYLFLGDMFELGNEAETEHQAITDFVEDNFEEGIYLIGENFFRT- 59

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               ++   H   + + L   +++  +    +++K S      R+++L+
Sbjct: 60  ----KTKSSHKFSSFENLKPKLKTLQLKNTTLLIKGSRGMALERILDLI 104


>gi|126441714|ref|YP_001060540.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
 gi|126221207|gb|ABN84713.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 668]
          Length = 514

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 152/480 (31%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPADGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        I   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAIVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          +  AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTPAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|116617847|ref|YP_818218.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096694|gb|ABJ61845.1| UDP-N-acetylmuramyl tripeptide synthase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 490

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 64/481 (13%), Positives = 140/481 (29%), Gaps = 63/481 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-HYDGHDFILHAVQKG 64
           T  +LL                + +  D+R +     F  IKG        ++ +    G
Sbjct: 7   TIQNLLVDHNLLLDAPDVDMTFDFLHYDTREVQKNTLFV-IKGAFK---RAYLDNV--HG 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
              ++  T +      + +P + V +V  AL+ L++A     + +  I A TG+ GKTT 
Sbjct: 61  ITGLITETKI-----DVDLPQWQVTNVQKALSLLSMAFFDYPQEQLWIGAFTGTKGKTTA 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPL------------TLARMPVDVDFGIFE---- 166
                  L      +  + S  + I  P                 +  D+   +      
Sbjct: 116 AYFAYTMLKEATNNHTALFSTVDRITGPQASDKKKSDLTTPESYELFKDMRQVVDNGMTH 175

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S    ++   + +R  +     I+P H+        E+  + K  + +  ++   
Sbjct: 176 LVMEVSSQAYLKNRVYGLRYDVGAFLNISPDHIGPNEHPTFEDYLAHKLMLLDHSDEVIV 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                          K+H      +Y++ +      +    +     + ++ +       
Sbjct: 236 NAETDHFDTIYTYAKKAH----HKVYTYSRQMFTSEESAIHESRF--TVVKSEFNEMLGS 289

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G     N +  + +VS         +K L                    F    
Sbjct: 290 YRLNVPGDFNESNAMAAMMLVSFAGVKHQAMVKGLDEVFIPGRMLSLPINGHGVAFVDYA 349

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           +    + +  GR + V+G     G   ++    +   L+     
Sbjct: 350 HNFVS-------MQALLSFAQAQYPNGRVLVVVGSPGNKGVSRRADFGHVVSDLA----D 398

Query: 403 HVWLSGFH---------VLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V+L+               +   +      VHY            S+  + D+V+V  K
Sbjct: 399 VVYLTADDPQFENPLDIAHEIAAHINNDKLEVHYEMNRIAAIHEAISAANENDIVIVAGK 458

Query: 451 S 451
            
Sbjct: 459 G 459


>gi|53726027|ref|YP_104099.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|67643634|ref|ZP_00442379.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|76812034|ref|YP_334920.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121598737|ref|YP_991826.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|124384687|ref|YP_001027319.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10229]
 gi|126448584|ref|YP_001082744.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|166998642|ref|ZP_02264500.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|167740317|ref|ZP_02413091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 14]
 gi|217425702|ref|ZP_03457192.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|254178840|ref|ZP_04885494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|254191017|ref|ZP_04897523.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254202820|ref|ZP_04909183.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|254208162|ref|ZP_04914512.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|254258612|ref|ZP_04949666.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
 gi|254299371|ref|ZP_04966821.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|254357634|ref|ZP_04973908.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|52429450|gb|AAU50043.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 23344]
 gi|76581487|gb|ABA50962.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710b]
 gi|121227547|gb|ABM50065.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei SAVP1]
 gi|126241454|gb|ABO04547.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei NCTC 10247]
 gi|147747067|gb|EDK54144.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei FMH]
 gi|147752056|gb|EDK59123.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei JHU]
 gi|148026698|gb|EDK84783.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei 2002721280]
 gi|157809125|gb|EDO86295.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 406e]
 gi|157938691|gb|EDO94361.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei Pasteur 52237]
 gi|160694754|gb|EDP84762.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei ATCC 10399]
 gi|217391290|gb|EEC31322.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 576]
 gi|238525013|gb|EEP88443.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei GB8 horse 4]
 gi|243065321|gb|EES47507.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia mallei PRL-20]
 gi|254217301|gb|EET06685.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 1710a]
          Length = 514

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 154/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A          +  + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|154706319|ref|YP_001425285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii Dugway 5J108-111]
 gi|189082876|sp|A9KER6|MURD_COXBN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154355605|gb|ABS77067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           Dugway 5J108-111]
          Length = 442

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 124/375 (33%), Gaps = 44/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IIAITGS GKTT   ++ + + +  +      S   +IG P+   ++  + D
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNV----SVCGNIGEPVLE-QITPEPD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+       
Sbjct: 155 YYVLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIYTDCFIPI 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                 +         K  + G+     F              + ++++ +  Q +    
Sbjct: 211 VNADEPEIWRHLPFNKKPLSFGLNNAADFSL-----------AEHNQKTSIAYQGKILMP 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                    H  QN L  L + +     ++  +  L  F     R    +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRC---QWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +     + +  +    +G+ I + G   +  + S        + +    +
Sbjct: 317 YNDSKGTNVGAT---RAAIESLGQAAKGQLILIAGGQGKGADFSP------LKDVVKRYV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     L+  L     + ++++M+        +   GD+V++    +S      
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLLSPACASFDMFTN 427

Query: 453 ---NSCGFYRLINLL 464
                  F   +  L
Sbjct: 428 YEHRGDVFTETVEAL 442


>gi|29653489|ref|NP_819181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161830535|ref|YP_001596099.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii RSA 331]
 gi|212213341|ref|YP_002304277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coxiella
           burnetii CbuG_Q212]
 gi|62900583|sp|Q83F20|MURD_COXBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082877|sp|A9NA40|MURD_COXBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711904|sp|B6J2Q5|MURD_COXB2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29540751|gb|AAO89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 493]
 gi|161762402|gb|ABX78044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           RSA 331]
 gi|212011751|gb|ACJ19132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coxiella burnetii
           CbuG_Q212]
          Length = 442

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 124/375 (33%), Gaps = 44/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IIAITGS GKTT   ++ + + +  +      S   +IG P+   ++  + D
Sbjct: 100 FARNVNKPIIAITGSNGKTTVTTVVGLMMKAAGRNV----SVCGNIGEPVLE-QITPEPD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T  +R   A I  I+  H++ ++ +++   AK  I+       
Sbjct: 155 YYVLELSSFQL----ETTFSLRSQAATILNISEDHMNRYATLQDYLRAKQRIYTDCFIPI 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                 +         K  + G+     F              + ++++ +  Q +    
Sbjct: 211 VNADEPEIWRHLPFNKKPLSFGLNNAADFSL-----------AEHNQKTSIAYQGKILMP 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                    H  QN L  L + +     ++  +  L  F     R    +          
Sbjct: 260 IQELKLNARHHLQNALAALALGTAAKIPIENMLHVLRDFSGIRHRC---QWVRKYKEIDY 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +     + +  +    +G+ I + G   +  + S        + +    +
Sbjct: 317 YNDSKGTNVGAT---RAAIESLGQAAKGQLILIAGGQGKGADFSP------LKDVVKRYV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     L+  L     + ++++M+        +   GD+V++    +S      
Sbjct: 368 KQVILIGEDAPLLEKTLKEITVIKHADSMNEAVKRSTQAAKAGDIVLLSPACASFDMFTN 427

Query: 453 ---NSCGFYRLINLL 464
                  F   +  L
Sbjct: 428 YEHRGDVFTETVEAL 442


>gi|319440251|ref|ZP_07989407.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Corynebacterium variabile DSM 44702]
          Length = 549

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 79/499 (15%), Positives = 135/499 (27%), Gaps = 56/499 (11%)

Query: 6   TFHDLLQAIQGHSI-----------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           T   L +   G  +               Q  V   +ID+R +     F A+ G    G 
Sbjct: 16  TLAQLAELTGGRLVDVAGTAAGVASAEQGQQTVATAAIDARDVPADGLFMAVPGTRAHGA 75

Query: 55  DFILHAVQKGAGLVVVNTDMVASI--GSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
            F       G   V+ + + +  +  GS       VDD    L  +A           T+
Sbjct: 76  RFAGQ--SAGHS-VLTDEEGLGVLVDGSWQGTALVVDDCRQWLGPVAAEIHGHPSRDMTV 132

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-----------VPLTLARMPVD 159
           I +TG+ GKTTT  M+  AL   +       +     G            P   A     
Sbjct: 133 IGVTGTSGKTTTTYMMERALLGHRHVGLIGTTGTRIDGRKIPTSLTTPEAPTLQALFARM 192

Query: 160 VDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D G+    + +S    +      V   +A  T ++  HL     +E+   AK+ +F   
Sbjct: 193 RDEGVTHVVMEVSSHALVLGRVRGVDFDVAGFTNLSQDHLDFHPTMEDYFDAKSMLFTEP 252

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +              +    +          +      A                 V + 
Sbjct: 253 QDPAGELPVPVVCVDDEWGRRLAGRTGDATVTVSTDGEAATWQVSDVAVHPDGTQHVTVD 312

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRC 332
               +V +             TL + +++ A  D +I          GR ++      + 
Sbjct: 313 RADGQVEYDLSIPGAFNVANATLALATLVAAGEDASIADELAEVSVPGRMEKISGSSPQT 372

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A++            A  A +      L + +  G G     LG +   G          
Sbjct: 373 AVDFLALVDYAHKPGAVTAVLDTLNGQLDRAAAGGNGATRGRLGVVLGAGGNRDHEKRPK 432

Query: 393 AEVLSLYNISHVWLSGFHVLA-------------LKDALPR-----SIHVHYSETMDGLF 434
               +      V ++  +                  DA  +     S  +          
Sbjct: 433 MGAAAAAVADLVIVTDDNPRDEDPATIRAAVLAGAGDAAAQRTDGVSPEIREIGDRAEAI 492

Query: 435 LFIQSSLVDGDVVVV--KS 451
                    GDVVVV  K 
Sbjct: 493 RDAVGWARSGDVVVVAGKG 511


>gi|227495120|ref|ZP_03925436.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
 gi|226831572|gb|EEH63955.1| possible UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces coleocanis DSM 15436]
          Length = 486

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/483 (12%), Positives = 131/483 (27%), Gaps = 56/483 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+       +  A+    I           +S +S+ + P   F   KG  ++   ++  
Sbjct: 1   MDLSLNVTQVRAALATELIADTLTNQVFTQVSYNSKKVIPGALFVC-KGAKFN-VAYLEE 58

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-------------- 105
           A++ GA   +           ++     V D+  A+ KLA A                  
Sbjct: 59  AIENGALAYISE-----VAYPVAAAWIQVKDIRVAIPKLANAFYTTPFAAFQLTGITGTK 113

Query: 106 -------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                      I+    +    T+  + +I             +    + +         
Sbjct: 114 GKSTTTIFLQRILDTYLANTGKTSGIISSINTYDGIVNEESSLTTPEPLELFEHFHNARQ 173

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                +  + +S  G        V   + V   I   H+S     +     ++++    +
Sbjct: 174 SALPFVT-MEVSSQGLKYHRVGGVLFDVGVFLNIDKDHISAIEHPDFEDYFQSKLMLFKQ 232

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +          +L A           +      ++                ++ Q 
Sbjct: 233 VKHLVINLDSAEIDRVLAAIPA------HVTVTTISASNPAADFCATNISTDGYSIKFQV 286

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E+     G    +N L  + +            +ALS               + +  
Sbjct: 287 SGEEIDLGISGLFNVENALAAIAVARHYGIPFTAIKEALSEIRVPGR----MELFIGENP 342

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +    Y  N  S +       +  P  +   I + G     G  + +  +DLAE +S 
Sbjct: 343 NLVTIVDYAHNRLSYERLFQSCEESFPGFKK--IIIFGCP---GHKALNRRVDLAE-VSD 396

Query: 399 YNISHVWLSGFHVLA-----LKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVV- 449
               H+ L+     A     +   + +++    V   +     F +  S +    V++  
Sbjct: 397 EYADHIILTMEDPNAEPVSEISADIAKNVKHTPVSIVDDRVESFAYALSLVEGKTVILFV 456

Query: 450 -KS 451
            K 
Sbjct: 457 GKG 459


>gi|191637036|ref|YP_001986202.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei BL23]
 gi|190711338|emb|CAQ65344.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Lactobacillus casei BL23]
 gi|327381063|gb|AEA52539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei LC2W]
 gi|327384238|gb|AEA55712.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactobacillus casei BD-II]
          Length = 517

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 133/473 (28%), Gaps = 49/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P +  R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPESDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    +     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTL----GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  + L       +   A +   +  +       G  K       +        +   +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHTKVAGHGAVYVD 374

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
            A   A++  L     H        L  +   G+   S     A+VL+ +       +  
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRL-LVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +   I      VH             S     D+VVV  K 
Sbjct: 434 PGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSRPNDIVVVAGKG 486


>gi|294648998|ref|ZP_06726446.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825133|gb|EFF83888.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 452

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 123/393 (31%), Gaps = 54/393 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG                  IPV  V D+           R  +   I+AITGS
Sbjct: 82  IQQALEKG------------------IPV--VSDIQLL--------RRATDVPIVAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +  +      K      +   ++G P     +    +  + EL    L    
Sbjct: 114 NAKSTVTTLFGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPELIVLELSSFQLETTS 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L       +AV+  ++  HL     +     AK  IF+G++K             +   
Sbjct: 169 HLNA----EVAVLLNMSEDHLDRHGDMLGYHKAKHRIFQGVKKVVYNR--------DDSL 216

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++     +  + SFG +     Q    ++     W+    +        +  G H   N 
Sbjct: 217 SRPLVPDVTPMQSFGLNAPDMNQYGVLREADGSMWLARGRERLIKTSDLYIQGMHNVANA 276

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +     + ++ L  F   E R                ++S   N  +  AA
Sbjct: 277 LACLALGEAIGLPTQSMLETLQQFKGLEHRC---EYVQTVDQVRYYNDSKGTNVGATLAA 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L        G+   +LG   +  +                 +  V L G     ++ 
Sbjct: 334 IEGLGAAIEAKHGKLALILGGQGKGQDFKP------LRNAIQKYVKTVILIGEDAAMIEQ 387

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AL  +  + ++ ++         +    DVV++
Sbjct: 388 ALHNTTQIQHASSLKQAVDIAHQATQAEDVVLL 420


>gi|332637430|ref|ZP_08416293.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase [Weissella
           cibaria KACC 11862]
          Length = 508

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 81/492 (16%), Positives = 151/492 (30%), Gaps = 61/492 (12%)

Query: 5   WTFHDLLQAI-QGHSIGIVPQ--GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
            T   + + +     +   P+  G +  ++ +S  +AP+   F IKG  +   +++  A+
Sbjct: 3   LTAQQITEILADQDLLISTPEFKGELKHLAYNSNDVAPETLLF-IKG-RFKA-EYLTDAI 59

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGK 119
            KG   +V      +      +P + VDDV  A++ L++A     ++K  +I ITG+ GK
Sbjct: 60  AKGVKAIVA---PTSFTHDTDLPTWVVDDVPAAMSVLSMAFYDYPQNKLALIGITGTKGK 116

Query: 120 TTTKEMLTIALSSIKKTY-------------ACIGSYNNHIGVP-------LTLARMPVD 159
           T+   M    L                         Y  H+  P            +   
Sbjct: 117 TSATYMAYEMLRVATDDKVALSSTLQVITGADPKFHYRAHLTTPESLDLFRWMAEAVANG 176

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGL 217
           +   + E+  S         + +R ++ V   I+P H+        E+    K  +F+  
Sbjct: 177 MTHMVMEV--SSQAYKMERVYGLRFNVGVFLNISPDHVGENEHPTFEDYLEHKMMLFDHS 234

Query: 218 EKTGTIFLNYDDSFFELLKAK------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           E+      +   S                  G +   S       D      +  +    
Sbjct: 235 EQIILNADSDHFSELIEHAELAVPRDGIWLYGREDEDSPKADVYYDTVEADLQGSTFAVR 294

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              Q   +      + +      N    +    I T  V     A+           R +
Sbjct: 295 EAGQQAARLGIAGDYHLDMPGDFNQGNAV-AAMIATRLVGADTDAMHEGLEVVKIPGRMQ 353

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               Q   T+  + Y  N AS+ A ++ +       +     V+G     G         
Sbjct: 354 VLTTQNHGTIYVD-YAHNYASIAALLNFVRTNETVEK--LTIVVGAPGNKGVSR----RP 406

Query: 392 LAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI---HVHYSETMDG--LFLFIQSSL 441
                       V+L+          A+ D +  +I   HV  +  MD          + 
Sbjct: 407 GIGQAVSEGADVVYLTSDDPQFEDPNAIADEIQAAITNDHVVINREMDRTIAITEAIKAA 466

Query: 442 VDGDVVVV--KS 451
              DVVV+  K 
Sbjct: 467 GPNDVVVLAAKG 478


>gi|305680919|ref|ZP_07403726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
 gi|305659124|gb|EFM48624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium matruchotii ATCC 14266]
          Length = 497

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 146/481 (30%), Gaps = 51/481 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQ---GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  D+ Q I     G   +     +  + ++S  +     F A+ G    G      A  
Sbjct: 4   TVLDVAQLIGARMQGGTAEQAQVPITEVGLNSAELPAGALFAAVPGTRVHG---ARFAAD 60

Query: 63  KGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVG 118
             A  ++ +      + +     PV  VDDV   L   A A      S+ T+I ITG+ G
Sbjct: 61  TAAAAILTDEAGWGLLSAAGETRPVLVVDDVRSVLGVAAAAVYGDPSSQLTVIGITGTSG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTL---------------ARMPVDVDF 162
           KTTT  ML   L +       IG+      G P+                   +   V  
Sbjct: 121 KTTTSYMLEAGLLAAGYRVGLIGTTGTQINGRPVPTSLTTPEAPTLQALFVQMLAEGVTH 180

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+  SH   +  +   V+  +A  T ++  HL   + + E   AKA  F     + T
Sbjct: 181 VVMEV-SSHALMLGRV-LGVKFDVAGFTNLSQDHLDFHATMAEYFDAKALFFR--PGSPT 236

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     +    K  ++    + +      A        Q  E+   E +L   S  
Sbjct: 237 RAARAVVCVDDEWGEKMASVFGSGVRTLATRGQAGDYTVSAVQTVERGGQEFRLAAPSGA 296

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           VV   +      N+      +++           L         G+       Q F  ++
Sbjct: 297 VVAATVPLPGRFNVANAALALALADTVGVDMTALLPGLAGVGVPGRMEVVDCGQDFLAVV 356

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D ++           +VL+ +     GR   V+G     G         +    +     
Sbjct: 357 DYAHKPAA-----IKAVLATVRGQITGRIGLVVGA----GGDRDHSKRPIMGAEAAAGAD 407

Query: 403 HVWLSGFH----------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
           +V ++  +             L      S  V            + +    GD V++  K
Sbjct: 408 YVVVTDDNPRNEDPAAIRAQVLAGTAAGSAEVVEIGDRRAAIRQVVAWAKPGDAVIIAGK 467

Query: 451 S 451
            
Sbjct: 468 G 468


>gi|213963298|ref|ZP_03391555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
 gi|213954160|gb|EEB65485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Capnocytophaga
           sputigena Capno]
          Length = 447

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 109/369 (29%), Gaps = 39/369 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITGS GKTTT  +                    +IG          +  + + E+  
Sbjct: 104 IVGITGSNGKTTTTLLTHQIFKDAGLQV----GLGGNIGYSFAELVATENPPYYVLEISS 159

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYD 228
             L  I        PHIAV+  I P HL  +    E   ++K  I     +   +  + D
Sbjct: 160 FQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYIASKFRIAMNQTENDYLIYDAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E              +S  K       L+  K        +     +         
Sbjct: 216 DPVIEEWLQNHILKVKLIPFSIEKELPYGAFLKDNKIHI-MLENQTAETTEIDVEEISLR 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N +       ++    ++   +L  F   + R +  +        T +++S   
Sbjct: 275 GKHNIKNTMAASVAARLVNIRNNSLRDSLKGFKGVDHRLEEVKVVEGV---TYVNDSKAT 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S+  A+  +        G            G+   + +  L   +    +  +   G
Sbjct: 332 NVNSVYFALDTIKTPIVWIVG------------GQDKGNDYNALLPYVHE-KVKAIVCLG 378

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSC 455
                +  +       +  +++MD      +    +GD V++    +S            
Sbjct: 379 VDNEPILRSFSNSGKEMIETQSMDEAVRIAKKFATEGDTVLLSPACASFDLFKSYEDRGD 438

Query: 456 GFYRLINLL 464
            F   +  L
Sbjct: 439 QFKAAVARL 447


>gi|254199058|ref|ZP_04905473.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
 gi|169656888|gb|EDS88285.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei S13]
          Length = 514

 Score = 77.2 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 154/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      +VP   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRTHVVPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|251811443|ref|ZP_04825916.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805033|gb|EES57690.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 552

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 146/344 (42%), Gaps = 2/344 (0%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML  A            + N    V L L +M    +F + E+ ++ L  +   ++L++P
Sbjct: 1   MLISAGLKDYYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSLNALNAVGNSSYLIKP 60

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +IA++T I  AH+S F  I  I   KA IF+GL   G   +N D    ++L  ++     
Sbjct: 61  NIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDTLHSDILIERAKQNTS 120

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             I       +A    +  +     + + +   G+      + I   M +N L T   +S
Sbjct: 121 NVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRINSISDGMVENSLATFATLS 180

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   ++ A++ LS F P E                LID+++NA+  +M  AI   +  +
Sbjct: 181 HLDIPLERALENLSTFKPFEKVLNLKEVETPNYKVNLIDDTHNASLPAMINAIKAFNTQT 240

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G +I  +G + ++G+ S+S H+ L +VL   N  ++      + ++   + +S ++
Sbjct: 241 KFFKGNKIIAIGQISDLGKHSKSLHLQLVDVLENSNADYILCMDDALKSVVIGV-KSKNI 299

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLLLEE 467
            +      L   +        + ++KSS     F +L   L E+
Sbjct: 300 TWYSNRHLLEKDLLYLNKPDSLTLLKSSAGGTEFPKLAKELPEK 343


>gi|87302991|ref|ZP_01085795.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
 gi|87282487|gb|EAQ74446.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. WH 5701]
          Length = 508

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 69/483 (14%), Positives = 138/483 (28%), Gaps = 46/483 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            H LLQ         +P   V G+S DSR +A    F  + G   DG  F   A+++GA 
Sbjct: 5   LHSLLQDCAVAIPAQLPDAVVTGLSCDSRRVAAGTLFIGLPGSQVDGGSFWPAALERGAA 64

Query: 67  LVVVNTDMVASIGSLSI-PVFGVDDVL-GALNKLAVAARLRSKATIIAITG--------- 115
             ++     A        PV  ++D +     +LA +        +  I           
Sbjct: 65  AALIGPAAAAQCPPGPADPVLVLEDPVAEWAGRLAASFWHDPSRRLALIGVTGTNGKTTT 124

Query: 116 -------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
                  S G   +  +    ++                 V        V+    +  + 
Sbjct: 125 THLIEHLSAGCGKSTALFGTLINRWPGHSVTASHTTAFADVLQGQLARAVEAGAQLAAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +          AV T +   HL     +E    AKA +F      G+  +N D
Sbjct: 185 VSSHALDQRRVAGCHFAGAVFTNLTQDHLDYHPSMEAYLEAKARLFSSELLDGSAVVNID 244

Query: 229 DSFFELLKAKSHALGIKTIYSF---------GKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           D +   L  +      + ++           G     + +L      ++     +     
Sbjct: 245 DPWGARLAERLSGQLGERLWRSSLAVAAAEVGPEDLPELRLDDLVFAADGVSGTLITPLG 304

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G     N+L  +G++      +   ++A+  F    GR +R          
Sbjct: 305 CGAFRSPLVGRFNLMNLLQAVGVLQQQGLPLAQLLEAIPSFRGVPGRMERVMLPEAAELP 364

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ +  +          + L+   P   G+ + V G     G             ++  
Sbjct: 365 AVLVDYAHTPDG----LENALAACRPFARGQLVCVFG----CGGDRDRGKRPQMAAIAAR 416

Query: 400 NISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
               V ++  +            +   +P    +              +     D+V++ 
Sbjct: 417 LADRVVVTSDNPRTEDPQRILDDVVAGIPSGTDLTVEVDRAAAIAAAVAMAGPSDLVLIA 476

Query: 450 -KS 451
            K 
Sbjct: 477 GKG 479


>gi|218780973|ref|YP_002432291.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
 gi|254766048|sp|B8FBS0|MURD_DESAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218762357|gb|ACL04823.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 450

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 131/405 (32%), Gaps = 52/405 (12%)

Query: 73  DMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            ++ +     +PV G V        +LA       +A IIA+TG+ GKTT   ++   + 
Sbjct: 83  PVLEAAREKGVPVIGEV--------ELASRF---IQAPIIAVTGTNGKTTVTSLIGEMME 131

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +   +    G+  N +   +  A+        + E+    L  I        P +A++T 
Sbjct: 132 ASGISAFVGGNIGNPL---VNYAKGEDKAQVVVAEISSFQLDTIESFA----PKVALLTN 184

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   H+  + G+E  A++KA +F          LN  D +   +      +     +  G
Sbjct: 185 VTEDHMDRYDGMEGYAASKARVFMNQTGADFAILNGCDKWSRAM---CGGIKASQWFFTG 241

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +               +  +        ++   G                +  + +  
Sbjct: 242 REEAEAGIAMNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAGASVEGI 301

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                     P      R             D+S   N  ++  A+   +          
Sbjct: 302 QGAIDAFKGLP-----HRLEFVREVMDVKYYDDSKATNVDAVLRALEGFNA-------PV 349

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             ++G   + G      H    + +     + ++++G     +  AL  S+ V  + T++
Sbjct: 350 HLIMGGRDKGG------HFRDLKDMVEQKAARLYVTGEAAGIITSALSGSVEVVQAGTIE 403

Query: 432 GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
               F + +   G+VVV+    +S             F R++N L
Sbjct: 404 KAVEFAKRAARPGEVVVLSPGCASFDQYKNYKERGKDFCRVVNAL 448


>gi|77361418|ref|YP_340993.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876329|emb|CAI87551.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 453

 Score = 77.2 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 148/456 (32%), Gaps = 52/456 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGH--DFILHAVQKGAG 66
           + + +      I      +    D R I    E F         GH  + +  A      
Sbjct: 4   IAEVLAFEGYRITGSDIAHSAMTD-RLIKAGAEVFI--------GHHENNVKDA----NV 50

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +VV +     +   ++     V  V  A   LA   R R     IAI G+ GKTTT  ++
Sbjct: 51  VVVSSAIDETNPEIIAAKAARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLI 106

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
               +        I     +              DF I E   S    +      ++P +
Sbjct: 107 ASIYAQAGLDPTFIIGGLLNS---AGSNAKVGKSDFLIAEADESDASFLH-----LQPMV 158

Query: 187 AVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +VIT I   H+  +   +E++     +    L   G   +  D      L  +     I 
Sbjct: 159 SVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRPVI- 217

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVS 304
              ++G+S +AD+++  + Q +      V  +         +  G H A N    + +  
Sbjct: 218 ---TYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAIAVAK 274

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                    ++AL  F     R + Y    N+    ++ + Y  +P+ + A I+   +  
Sbjct: 275 DQNIANFAILEALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGW 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLA 413
           P        V+         ++  + D  +VL+   +  + L            G    +
Sbjct: 335 PDK----RLVMVYQPHRFTRTRDLYEDFVKVLAE--VDQLLLLDVYSAGEEPIVGADSKS 388

Query: 414 LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L  +L  R     +      L   +   L + D+V+
Sbjct: 389 LCRSLRQRGKEPRHVANSAELASVLADCLQNNDLVL 424


>gi|332531950|ref|ZP_08407834.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038577|gb|EGI75020.1| UDP-N-acetylmuramate--alanine ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 483

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 83/457 (18%), Positives = 157/457 (34%), Gaps = 55/457 (12%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGH--DFILHAVQKGA 65
           ++L        G       +    D R I    E F         GH  + +  A     
Sbjct: 36  EVLAFEGYRITGSD---IAHSAMTD-RLIKAGAEVFI--------GHHENNVKDA----N 79

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +VV +     +   ++     V  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 80  VVVVSSAIDETNPEIIAAKAARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSL 135

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +             I     +              DF I E   S    +      ++P 
Sbjct: 136 IASIYGQAGLDPTFIIGGLLNS---AGSNAKVGKSDFLIAEADESDASFLH-----LQPM 187

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++VIT I   H+  +   +E++     +    L   G   +  D      L  +     I
Sbjct: 188 VSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRPVI 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++G+SK+AD+++  + Q +   ++     QG+ +    +  G H A N    + + 
Sbjct: 248 ----TYGESKDADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGRHNALNATAAIAVA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     ++AL  F     R + Y    N+    ++ + Y  +P+ + A I+ + + 
Sbjct: 304 KDQNIANHAILEALQKFEGIGRRFQHYGEFENERGNVMLVDDYGHHPSEVAATIAAVREG 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
            P        V+         ++  + D  +VL+  ++  + L            G    
Sbjct: 364 WPDK----RLVMVYQPHRFSRTRDLYEDFVKVLA--DVDQLLLLDVYSAGEDPIVGADSK 417

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +L  +L  R     +  T   L   + ++L + D+V+
Sbjct: 418 SLCRSLRQRGKEPLHVATNAELAGVLAANLQNNDLVL 454


>gi|237813924|ref|YP_002898375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
 gi|237503508|gb|ACQ95826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate
           ligase)(Meso-diaminopimelate-adding enzyme)
           (Meso-A2pm-adding enzyme)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (UDP-MurNAc-tripeptidesynt [Burkholderia pseudomallei
           MSHR346]
          Length = 514

 Score = 76.8 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 154/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      +VP   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVVPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        I   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAIVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|320352820|ref|YP_004194159.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121322|gb|ADW16868.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfobulbus
           propionicus DSM 2032]
          Length = 458

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 139/400 (34%), Gaps = 40/400 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATI 110
           GH     A   GA +V+           L +PV        L  L +LA+AA  +    +
Sbjct: 62  GHT---AAFLAGADMVI-----PGPGVPLDLPVLQAARKQGLPVLGELALAA-GQYAVPV 112

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGM 169
           IA+TGS GKTT   ++   L +  K          +IG PL      P   D  + EL  
Sbjct: 113 IAVTGSNGKTTVTSLIGELLRASGKNPFVG----GNIGTPLLDYFADPQGYDAVVLELSS 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L     L    RP I ++  I+P HL     +E    AK  +F   +      L  DD
Sbjct: 169 FQLD----LAGAFRPDIGLLLNISPDHLDRHGSLEAYTLAKQNLFRHQQLGDRAILGADD 224

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                + A +        ++FG+++    ++   +         +  + + +        
Sbjct: 225 P----VAAATPLNPEVGRFTFGRAEGCTARIADGRILLTLMAGALSGKTEYVLSGTTLHS 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                N    +  V++   +     + L  F P   R               I++S   N
Sbjct: 281 SVNQLNAAAAILAVTLAGCEQAGIAEGLRRFVPPPHRM---AEVATIDGVRFINDSKATN 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +++AA+          E   + + G   +  + S      L   +    + H+ L G 
Sbjct: 338 IGALEAAL-------AGCESPVVLIAGGRDKGSDYS------LLREVVGRKVKHLVLVGE 384

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               ++ AL   +    + TM+       ++   GD+V++
Sbjct: 385 AAGLMRAALGSLVPTEAATTMEDAVRRAMTAAASGDLVLL 424


>gi|167904396|ref|ZP_02491601.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei NCTC 13177]
          Length = 514

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 153/480 (31%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVAPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFAVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARSGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|313886033|ref|ZP_07819771.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924563|gb|EFR35334.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 461

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 119/356 (33%), Gaps = 27/356 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +++  A R    + +IAITGS GKTTT   L   L +         S   ++G  L    
Sbjct: 93  SEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDV----SMAGNVGTSLARQV 148

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
                 + + EL    L       +  R HIA++  I P HL  +   +E  A AK  I 
Sbjct: 149 ALAPHAYYVIELSSFQLDH----MYQFRAHIAILLNITPDHLDRYDHQMELYARAKMRIT 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  E T       +D + + L  +      + I+   K+ + D  +           +  
Sbjct: 205 QNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSDDAVVASSH----NGQLCF 260

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            LQ    E++   +      N+   L +     A         +          R     
Sbjct: 261 ALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNVPHRLEYIA 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +      I++S   N  S   A+  +           I +LG     G    + + DL +
Sbjct: 321 SIDGVDYINDSKATNINSTWYALESMR-------KPTILILG-----GTDKGNDYNDLMD 368

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++    +  ++L+      L  +    I  H    +M       +     GD V++
Sbjct: 369 LVKEKVVGLIYLT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTVLL 423


>gi|53720640|ref|YP_109626.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
 gi|167817535|ref|ZP_02449215.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 91]
 gi|167896010|ref|ZP_02483412.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei 7894]
 gi|167920624|ref|ZP_02507715.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei BCC215]
 gi|52211054|emb|CAH37042.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia pseudomallei K96243]
          Length = 514

 Score = 76.8 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 155/480 (32%), Gaps = 49/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      +VP   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRAHVVPGAQLHA---DTRSLRAGDVFVAYA---VDGADNRPFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSVGKTTT 122
           A  V+   +   + G  S     V  +      +A          +  + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGFPAEGLDSATSLAVPALDALAGDIASGWYGDPSDAMFSVGVTGTNGKTSC 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++++  A IG+  +  G+P  L                             
Sbjct: 126 TQWIAAALTALREPCAVIGTLGS--GMPGQLVHTGFTTPDAPQLQRSLAQLRDAGARAVA 183

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      E   +AKA++F        +   
Sbjct: 184 MEVSSHALHQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRCAVVNR 243

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKSME 282
            D +   LL   +  +          ++ AD          +  +  +   V       +
Sbjct: 244 DDPAGRRLLANLAGRVRTIAYGIDSPTQAADADRELVATNVRATATGTAFRVTSAWGEAD 303

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 304 VEVGTLGAFNVSNLLAVLGTLLAADVPFDAALAEIGKLESVNGRMQRLGGRLQNDEPLVV 363

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    G  I + G     G    +    L   ++     
Sbjct: 364 VD-YAHTPDALEKTLDALRPIAQARGGELICMFG----CGGDRDATKRPLMGAIAERLAD 418

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +  +      E      L         DVV++  K 
Sbjct: 419 KVVVTSDNPRSEDPQKIIDQIVAGMRDASGARRVEDRASAILQAVRGAAREDVVLLAGKG 478


>gi|332299375|ref|YP_004441296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176438|gb|AEE12128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 461

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 119/356 (33%), Gaps = 27/356 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +++  A R    + +IAITGS GKTTT   L   L +         S   ++G  L    
Sbjct: 93  SEIEFAYRYAGDSVMIAITGSNGKTTTTNWLYHTLHNAGLDV----SMAGNVGTSLARQV 148

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
                 + + EL    L       +  R HIA++  I P HL  +   +E  A AK  I 
Sbjct: 149 ALAPHAYYVIELSSFQLDH----MYQFRAHIAILLNITPDHLDRYDHQMELYARAKMRIT 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  E T       +D + + L  +      + I+   K+ + D  +           +  
Sbjct: 205 QNQEPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTKASSDDAVVASSH----NGQLRF 260

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            LQ    E++   +      N+   L +     A         +          R     
Sbjct: 261 ALQEPVFELLETDLALSGKHNVQNALAVGCAAQALGVKPEIIQASLETFTNVPHRLEYIA 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +      I++S   N  S   A+  +           I +LG     G    + + DL E
Sbjct: 321 SIDGVDYINDSKATNINSTWYALESMR-------KPTILILG-----GTDKGNDYNDLME 368

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++    +  ++L+      L  +    I  H    +M       +     GD V++
Sbjct: 369 LVKEKVVGLIYLT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMATAGDTVLL 423


>gi|212639658|ref|YP_002316178.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anoxybacillus
           flavithermus WK1]
 gi|212561138|gb|ACJ34193.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Anoxybacillus
           flavithermus WK1]
          Length = 447

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 119/391 (30%), Gaps = 46/391 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNKL------AVAARLRSKATIIAITGSVGKT 120
           +++      + +  IP     +  V  AL K          A   S+A II ITGS GKT
Sbjct: 65  LLDEPFDVVVKNPGIPY---TNALVQKALAKHIPIITEVEIAYETSEAPIIGITGSNGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   L   K+         N   V   +A+     D  + EL    L      T 
Sbjct: 122 TTTTLIYHMLQEAKRR---PLIAGNIGTVACEVAKHATKDDIIVMELSSFQLL----GTI 174

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RPHIAV+  I  AHL      E  A AK  IF+   +T    +N DD     L  KS 
Sbjct: 175 RFRPHIAVLLNIFDAHLDYHGTKEAYAEAKGNIFKNQTETDYAVVNADDPIVMQLAKKSR 234

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +        S  A  +        E+                  +      N+   L
Sbjct: 235 ARHVPFSVKTPLSYGATVKEGAIYFHDERIID------------TTDVALRGTHNLENIL 282

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+              V     G   R +           ++S   N  + + A+S  
Sbjct: 283 AAVAAAKLAGADNEAIRRVLTTFTGVPHRLQFVAEINGRKFYNDSKATNILATQKALSAF 342

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +      G            G    +   +L       ++  V   G     ++     
Sbjct: 343 HEPVILLAG------------GLDRGNEFDELLPYFK--HVKAVITFGQTAPKIERVARE 388

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    V   + ++            GD++++
Sbjct: 389 AGIQQVKRVDNVEQAAFAAYEWSSPGDIILL 419


>gi|260551075|ref|ZP_05825279.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
 gi|260405842|gb|EEW99330.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter sp.
           RUH2624]
          Length = 455

 Score = 76.8 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 117/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K  A       ++G P     +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLMGLMAKDAGKKVAIG----GNLGRPALDL-LKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     + E   AK  IF+G++K   
Sbjct: 162 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLEYHQAKHRIFQGVKKVVF 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 218 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGILRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKHFKGLEHRC---EYVKTVHDVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFTPLRSSIEKYA-----K 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 381 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVEICQRETQAEDVVLL 427


>gi|226711953|sp|A3M1C6|MURD_ACIBT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193076113|gb|ABO10720.2| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 17978]
          Length = 448

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLACGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|126640338|ref|YP_001083322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ATCC 17978]
          Length = 435

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 87  RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 141

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 142 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 197

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 198 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLACGLQRLIKS 249

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 250 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 306

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +        
Sbjct: 307 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYA-----K 360

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 361 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 407


>gi|326803773|ref|YP_004321591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326651338|gb|AEA01521.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 462

 Score = 76.4 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 118/375 (31%), Gaps = 42/375 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +I ITGS GKTTT  +L   L   K+         N     LT ++     D  + E
Sbjct: 114 QAEVIGITGSNGKTTTTSLLGEILQGAKELTGKTEVAGNIGIPALTASQGLSSQDRLVLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       RPHIA I  + P HL     IE   +AK  I +       + LN
Sbjct: 174 LSSFQLMGIE----TFRPHIAAIIDLYPTHLDYHGSIENYLAAKWRITKNQGPDDYLLLN 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           YD         +S A  I         K A +  ++              +         
Sbjct: 230 YDQEILWQKAKESSAQIIPISIESELEKGAWYNEKEGTLMWGS-------ETVLKREDLF 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  QN L+ L I  +L     +   A S FH  + R    +           ++S 
Sbjct: 283 LPGKHNVQNALVALAIAKLLGVSNASIQTACSQFHGVKHRI---QFVDQIKERRFYNDSK 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+    +      G          + G   +    +L +      +  +  
Sbjct: 340 ATNNEASITALRSFKEPLVWIAGG--------LDRGNGVKELLKELGQ------VHALVA 385

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G       D   ++    +  ++ ++            GDV+++    +S         
Sbjct: 386 MGETQDKFIDLANKAGISQISVAKNIEEATQAAYRLSQPGDVILLSPACASWDQYPNFEV 445

Query: 453 NSCGFYRLINLLLEE 467
               F   +  L ++
Sbjct: 446 RGQRFIDAVAELKKQ 460


>gi|213965229|ref|ZP_03393426.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
 gi|213952081|gb|EEB63466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Corynebacterium amycolatum SK46]
          Length = 524

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 80/507 (15%), Positives = 144/507 (28%), Gaps = 72/507 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNG----ISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M    T   L     G   GI              +++  +     F A+ G    G  +
Sbjct: 1   MTA--TLAKLCNLAHGRLDGITESAAAGADIAAFELNAADVPEGGMFAAVPGTRTHGARY 58

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIA 112
              +    A  V+ + + +  +       PV  VDDV   +  +A           TII 
Sbjct: 59  AQQSA---ATAVLTDEEGLKILREAGETRPVLVVDDVRAVMGHVAAEIYDHPSDSLTIIG 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG---VPL-------------TLARM 156
           +TG+ GKTTT  ML  AL +   +   IG+    I    VP                  +
Sbjct: 116 VTGTSGKTTTTYMLEGALLAAGCSTGIIGTTGTRINGRAVPSSLTTPEAPALQRLFHQML 175

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIF 214
              V   + E+  SH   +  +  +    +     ++  HL     +EE   A AK    
Sbjct: 176 SEGVTHVVMEV-SSHALSLGRVDGVS-FDVGCFLNLSQDHLDFHKTLEEYFQAKAKLFDP 233

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G        +  DD +   +   +       + +         +    +  +E      
Sbjct: 234 AGPTHAPKAVVCIDDDWGVRMADIAAGDPDVQVTTVHTQHRVTDKSPAAEVFAEWHAAAA 293

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV----------DTAIKALSVFHPKE 324
            +    ++ V           + + L     +                   A S      
Sbjct: 294 TVATNGVQHVELTRNNTDTVEVEVPLPGAFNVANAAVAWAVLDAVGHAKDAAKSGLAQVR 353

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
             G+  R    Q F  ++D ++     +      VL+ +    EGR + V+G     G  
Sbjct: 354 VPGRMERIDRGQDFLAVVDYAHKPAAVA-----EVLATLRAQTEGRVLVVVGA----GGD 404

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLA-------------LKDALPRSIH-----VHY 426
             S    +    +      V ++  +  +              K+A+          V  
Sbjct: 405 RDSAKRPIMGAEAACGADVVIITDDNPRSEVPSEIRAAVVAGAKEAVASGKASSDTVVEE 464

Query: 427 SETMDGLFLFIQSSLVDGDVVVV--KS 451
                     +      GD +VV  K 
Sbjct: 465 IGDRGQAIRRVVELAHSGDSIVVAGKG 491


>gi|301065370|ref|YP_003787393.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
 gi|300437777|gb|ADK17543.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei str.
           Zhang]
          Length = 517

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 132/473 (27%), Gaps = 49/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    +     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTL----GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  + L       +   A +   +  +       G  K       +        +   +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHTKVAGHGAVYVD 374

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
            A   A++  L     H        L  +   G+   S     A+VL+ +       +  
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRL-LVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +   I      VH             S     D+VVV  K 
Sbjct: 434 PGYEDPANIIEEIDSKIDHSKVKVHKVLDRQRAIAEAISDSRPNDIVVVAGKG 486


>gi|302336448|ref|YP_003801655.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
 gi|301320288|gb|ADK68775.1| UDP-N-acetylmuramyl-tripeptide synthetase [Olsenella uli DSM 7084]
          Length = 532

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 61/466 (13%), Positives = 108/466 (23%), Gaps = 43/466 (9%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
                G   G+     V G+  DSR  AP   F   KG  +    ++  A+  G    + 
Sbjct: 30  ANGSGGAEGGVSAD--VCGVDCDSRHAAPGHLFVC-KGNAF-RASYLAQALAAGCVGYLC 85

Query: 71  NTDMVASIGS--LSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEML 126
           +      + +    +P     D+  A+  ++  A         ++ ITG+ GK+T   ML
Sbjct: 86  DEARAGELAAHCPQVPRLVSHDLRRAMALVSAEAWGHPDRNLGVLGITGTKGKSTVAYML 145

Query: 127 TIA------------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
                                            S N     P     +      G+  + 
Sbjct: 146 RSILDSDADGTRGAPHTGILGSIETFDGIEREESVNTTPEAPDLWRHLHNAATSGLSHMV 205

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIF 224
           M  S           +   +A    I   H+S       E+   +K  IF+         
Sbjct: 206 MEVSSQALKYDRVVGLGLDVACFLNIGCDHISPVEHPSFEDYFESKLRIFDQACVAVVNL 265

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +          A+       +    G                  S  E ++Q       
Sbjct: 266 DSDKADVILERAARCGRTVTFSATGQGAGGAPAGAGGADVWAEGISSREGRIQMMVRTPS 325

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                      +      ++ +       I    V           R  L       +  
Sbjct: 326 WSEPVTVSMPGLFNADNALAAIAICEACGIGRERVVAGLARVRVPGRMELLPTADPKVTG 385

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +     +       S          IAVLG     G  +     +L +  S +   ++
Sbjct: 386 IVDYAHNKLSYQRFFSSMAQEFAGRAIIAVLGAP---GGKAYERRRELPQEASKW-ADYL 441

Query: 405 WLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
             +               L  A P                      
Sbjct: 442 IYTEEDPAGDPVEEICSQLAAATPAGQDFEVIVDRPAAIRRAVELA 487


>gi|228469391|ref|ZP_04054405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
 gi|228309075|gb|EEK17705.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           uenonis 60-3]
          Length = 461

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 119/356 (33%), Gaps = 27/356 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +++  A R    + +IAITGS GKTTT   L   L +     +       ++G  L    
Sbjct: 93  SEIEFAYRYAGDSMMIAITGSNGKTTTTNWLYHTLHNAGLDVSM----AGNVGTSLARQV 148

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
                 + + EL    L       +  R HIA++  I P HL  +   +E  A AK  I 
Sbjct: 149 ALAPHAYYVIELSSFQLDH----MYQFRAHIAILLNITPDHLDRYDHKMELYARAKMRIT 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  + T       +D + + L  +      + I+   +  + D  +           +  
Sbjct: 205 QNQQPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFSTEGSSDDAVVASSH----DGQLCF 260

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            LQ   +E+    +      N+   L +     A         ++         R     
Sbjct: 261 ALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPEVIRALLETFTNVPHRLEYIA 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +      I++S   N  S   A+  +           I +LG     G    + + DL +
Sbjct: 321 SIDGVDYINDSKATNINSTWYALESMR-------KPTILILG-----GTDKGNDYNDLMD 368

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++    +  ++++      L  +    I  H    +M       +     GD V++
Sbjct: 369 LVKEKVVGLIYMT-TDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGDTVLL 423


>gi|319948585|ref|ZP_08022712.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
 gi|319437751|gb|EFV92744.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate-
           -2,6-diaminopimelate ligase [Dietzia cinnamea P4]
          Length = 521

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 78/431 (18%), Positives = 134/431 (31%), Gaps = 44/431 (10%)

Query: 6   TFHDLLQAIQGHSIGIV-------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           T  DL + +    +G             V  I+ DSRS++   A+ A+ G H+ G DF  
Sbjct: 8   TVGDLSRLLGTPLVGGSRATARAVADLVVVDITDDSRSVSTGHAYLALPGSHHHGLDFEG 67

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
            A + GA + + +        S ++P   V D       L+            +  +TG+
Sbjct: 68  RAAEAGAAVAISDR------ASATLPTLVVGDPRAVSGPLSAWFHGCPSNAMRVFGVTGT 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLARMPVDVDFGI----------- 164
            GKT+T  +L   L++  ++   I        G+ L   R   +                
Sbjct: 122 NGKTSTAHLLEAGLAAAGESSGLISGAAIRGAGLDLRPVRTTPEAPMLQRTLGRMVRGGA 181

Query: 165 --FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               + +S     +     VR      T +   HL     +EE    KA +F        
Sbjct: 182 TACAMEVSSHAIDQGRVDGVRFRTVAFTNLGHDHLDYHHTMEEHYRVKASLFTAARADTA 241

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    D     L           ++   G    AD            S    +    ++ 
Sbjct: 242 VVSVDDHHGRRLAAESEPPTWTCSVRDVG----ADVYAEDVVCDGTGSRFTARTPYGAVP 297

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G H   N L+ L  +     D   A + LS      GR            FT +
Sbjct: 298 VRLRVLGPHQVPNALVALTCLLADGIDPLAAAEGLSRLSRVPGR---CEPVNAGQSFTAL 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +  +  P       ++L  +     GR I V+G     G   ++    L    + +   
Sbjct: 355 VDYMHNEPG----QRALLPHLRSMATGRLILVIGA---TGGRDRTKRRPLGRTAASF-AD 406

Query: 403 HVWLSGFHVLA 413
            V ++      
Sbjct: 407 LVIVTDESPED 417


>gi|330997824|ref|ZP_08321659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569712|gb|EGG51477.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paraprevotella
           xylaniphila YIT 11841]
          Length = 444

 Score = 76.4 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 128/408 (31%), Gaps = 53/408 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV  +    IP+        +  + A      + A +I ITGS GKTTT  ++    
Sbjct: 76  DAPMVLKVKEAGIPII-------SEIEFAGRY---THAKMICITGSNGKTTTTSLIYHIF 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG  L L     D D+ + EL    L       +  R +IAV+ 
Sbjct: 126 KKAGYNV----GLAGNIGQSLALQVAEKDYDYYVIELSSFQLD----NMYRFRANIAVLL 177

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +   ++    AK  I +  E+T       DD        K      K  +S
Sbjct: 178 NITPDHLDRYDHCMQNYVDAKMRILQNQEETDAFVYWNDDPIIRKELEKYQIKAKKCPFS 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K +     L   +   E             +      G H   N L       I    
Sbjct: 238 ILKKEGMIGYLADGQYVIE-----YPTPFNMEQESLALTGKHNMYNSLAAGITADIAGVK 292

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   ++LS F   E R       +       I++S   N  +   A+  +         
Sbjct: 293 NEVIRQSLSDFEGVEHRL---EKVVRVRGVDYINDSKATNVDACWYALESMKT------- 342

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             + +LG     G+   + +  +AE++    +  V+L G     L        I +  + 
Sbjct: 343 PTVLILG-----GKDKGNDYEAIAELVRKKCVGLVFL-GADNGKLHAFFDSFGIPIADTH 396

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +M             GD V++    +S             F  L+  L
Sbjct: 397 SMKDCVEACYRMARPGDTVLLSPCCASFDLFKNMEDRGEQFKSLVRAL 444


>gi|116750887|ref|YP_847574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699951|gb|ABK19139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 446

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 140/432 (32%), Gaps = 54/432 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKL----------AVAARLR 105
           +     KG  L +        +    I V  GV  +L  L +              A  +
Sbjct: 43  LDELRAKGCRLRLGEHHPDDFLNVDQIIVSPGVPSLLEPLREARLRGIEIVGEFEWAWRQ 102

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGI 164
             A +IA+TG+ GKTTT  ++   + +             +IG PL+   +  D VD  +
Sbjct: 103 VDAPVIAVTGTNGKTTTTALIGEMIKASGTRVFVG----GNIGTPLSRWLLDGDRVDCMV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L        L RP + V+  +   HL  +   EE   +K  +F   E T    
Sbjct: 159 LEVSSFQLDTA----FLFRPEVGVLLNVTEDHLDRYRDFEEYTESKLSMFGRQESTDVAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N DD       ++      + + S          +   +       +  + + +     
Sbjct: 215 INLDDPVCG---SRPFNGKGRLLTSSRNDPRTHAHVEDGRIVVN---VPWKPEFRLDLAD 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N+L  +     +    +   +A   F     R +  R A         D+
Sbjct: 269 LRLKGVHNEENVLAAILACLAMDVVPEAVARAAGTFGGLPHRVEWVRAAGGVD---YYDD 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  ++  AI              + +LG   ++G      +  +AE +       V
Sbjct: 326 SKGTNVGAVVKAIENFD-------RPVLLLLGGRDKLGS-----YAPIAERMRTRG-KGV 372

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK------------SS 452
           ++ G     +   L   + +     ++G F         GD+V++             + 
Sbjct: 373 FVFGESAPRIHAELRDKVPIRLFPDLEGAFSAAVERAQAGDIVLLSPACSSFDQYESYAQ 432

Query: 453 NSCGFYRLINLL 464
               F +L+  L
Sbjct: 433 RGDHFKKLVAAL 444


>gi|304386680|ref|ZP_07368961.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
 gi|304339233|gb|EFM05312.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis ATCC
           13091]
          Length = 469

 Score = 76.4 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  ++   + V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDVLVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|262280678|ref|ZP_06058461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257578|gb|EEY76313.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus RUH2202]
          Length = 455

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  ++  I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 107 RRATEVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 162 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGDMWGYHQAKHRIFQGVKKVIF 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 218 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFTGLEHRC---EFVKTVDDVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFAPLRSSIEKYA-----K 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 381 VVVLIGEDASVIEQAIQGTTKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|253997371|ref|YP_003049435.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
 gi|253984050|gb|ACT48908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera
           mobilis JLW8]
          Length = 452

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 142/435 (32%), Gaps = 68/435 (15%)

Query: 33  DSRSIAPQ-----------EAFF-AIKGPHYDGHDFILHAVQKGAGLVVV-----NTDMV 75
           D+R++ P              +  A+    +DG D            V+      +   +
Sbjct: 37  DTRAVPPGLDVLKAELPNVVVYVGALTPTVFDGVD----------LAVISPGVPLSEPEI 86

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
            +     IPV  V DV     +L    R  + A +IAITG+ GKTT   ++     S   
Sbjct: 87  QAAIQRGIPV--VGDV-----ELFAQYRP-TSAKLIAITGANGKTTVTTLVGEMCKSAGL 138

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG+P+         D  + EL    L      T+ +    A +  ++  
Sbjct: 139 ----KTIVAGNIGLPVLDTLSMETPDVYVLELSSFQL----ETTNSLLADAATMLNLSED 190

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+  +  ++  A AKA IF   +       +          +   A       +FG    
Sbjct: 191 HMDRYDSMQSYAVAKAHIFYHAKLQVLNRDDAW--------SLMMARAKLAQVTFGLDDV 242

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              Q    KQ + ++W+                G H A N L  + +   +  D    I+
Sbjct: 243 VAEQDYGIKQVNGETWLSCGTHDLMNIRDLKIAGLHNASNALAAMALCRGIGLDFAPIIQ 302

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F     R        N       D+S   N  +  AA+S LSQ       + + + 
Sbjct: 303 TLYNFKGLPHRV---EWVANIDDVDYYDDSKGTNVGATCAALSGLSQ-------KVVLIA 352

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLF 434
           G   +  + S        +     N   V L G     +  + L  ++ ++++  +    
Sbjct: 353 GGEGKGQDFSP------LKEAVSTNARAVVLIGRDAPLIEAELLSTNVPMYHAADLPEAV 406

Query: 435 LFIQSSLVDGDVVVV 449
              Q     GD V++
Sbjct: 407 TIAQKLAQTGDAVLL 421


>gi|78188037|ref|YP_378375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
 gi|122063240|sp|Q3ANV5|MURD_CHLCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78170236|gb|ABB27332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           chlorochromatii CaD3]
          Length = 464

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/363 (18%), Positives = 127/363 (34%), Gaps = 33/363 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A       KA ++ ITG+ GKTTT  ++     +  K +        + G+P +   +
Sbjct: 97  EVASCF---CKARMVGITGTDGKTTTSTLIHTLCEADGKRHGYRSYSVGNSGIPFSSMVL 153

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
            +   D  + EL    L      +    P +++IT I P HL  +   ++  A AK  IF
Sbjct: 154 AMQPNDVAVIELSSYQL----ERSISFHPQVSLITNITPDHLDRYGQNMQRYAEAKYRIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +   T   N DDS  +     S         +FG     + QL K +     + + V
Sbjct: 210 MNQQAGDTFIYNQDDSMLQAAFGASQIAVPCRSVAFGLEPLTNVQLDKRRVLVNGNMVVV 269

Query: 275 QLQGKSMEVVHH--------GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +    +++ +            G H   N+L  + +   L    +   +AL+ F   E R
Sbjct: 270 RQNDGALQPIVAVDEVLNRAFRGKHNLSNVLAAVAVGEALGIGSEVMRQALTAFGGVEHR 329

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                          I++S   N  +M+ A+  +           I + G     G    
Sbjct: 330 Q---ELVATIDGVEWINDSKATNVNAMRQALEAV-------PAPMILIAG-----GRDKG 374

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           + +  ++ ++    +  +  +G     L       + V    T+D            G+ 
Sbjct: 375 NNYATVSHLI-ERKVCLLIATGESREKLASFFKGKVPVIAVPTIDEAVAIAHQQAKAGES 433

Query: 447 VVV 449
           V+ 
Sbjct: 434 VLF 436


>gi|319953738|ref|YP_004165005.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Cellulophaga
           algicola DSM 14237]
 gi|319422398|gb|ADV49507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           algicola DSM 14237]
          Length = 444

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 109/372 (29%), Gaps = 42/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A II ITGS GKTTT  ++   L S             +IG          D ++ + E
Sbjct: 101 DAKIIGITGSNGKTTTTMLVNHILKSEGLHVGM----AGNIGDSYAKMVAENDFEYYVLE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L          +PHIA++T I+P HL  +    E   ++K  I E   +      
Sbjct: 157 ISSFQLD----GIVDFKPHIAILTNISPDHLDRYDYKYENYIASKFRIAENQTEDDYFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + DD        K         YS  ++              + +        K      
Sbjct: 213 DADDKDLTDWLKKHPVKAKLMPYSIERTIEEGAFSTNK----DITITTNNDTLKMKTDSL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +       ++    +T   +++ F        R    L       I++S
Sbjct: 269 SLEGKHNLKNTMAASTASKLIGIRKETIRNSVANFQG---AEHRLEKVLKIHHVEYINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +   +    G            G    + +  L  ++    +  + 
Sbjct: 326 KATNVNATYYALDSVRTPTVWIVG------------GVDKGNDYKSLMPLVRE-KVKAII 372

Query: 406 LSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     + +A    + +      M             GD V++    +S         
Sbjct: 373 CLGKDNTKIIEAFGNVVDLIVEAYDMSETVKIAYKMAERGDTVLLSPACASFDLFDNYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGNQFKAAVQNL 444


>gi|116493794|ref|YP_805528.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus casei ATCC 334]
 gi|122264751|sp|Q03CI6|MURE_LACC3 RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116103944|gb|ABJ69086.1| UDP-N-acetylmuramyl tripeptide synthase [Lactobacillus casei ATCC
           334]
          Length = 517

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 132/473 (27%), Gaps = 49/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    +     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTL----GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  + L       +   A +   +  +       G  K       +        +   +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHTKVAGHGAVYVD 374

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
            A   A++  L     H        L  +   G+   S     A+VL+ +       +  
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRL-LVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +   I      VH             S     D+VVV  K 
Sbjct: 434 PGYEDPANIIEEIDSKIDHSKVKVHKVLDRKKAIAEAISDSGPNDIVVVAGKG 486


>gi|254805545|ref|YP_003083766.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
 gi|254669087|emb|CBA07638.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha14]
          Length = 506

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGANVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 436 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 494 RVPAALLE 501


>gi|227534585|ref|ZP_03964634.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187834|gb|EEI67901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 517

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/473 (14%), Positives = 132/473 (27%), Gaps = 49/473 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQNTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTASYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    +     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFRPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTL----GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +  + L       +   A +   +  +       G  K       +        +   +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHTKVAGHGAVYVD 374

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
            A   A++  L     H        L  +   G+   S     A+VL+ +       +  
Sbjct: 375 YAHNYASMKALLSFLKHAYKDPRL-LVVVGSPGDKGVSRRPGFAKVLTEFATEAFLTTDD 433

Query: 409 ---FHVLALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   + + +   I      VH             S     D+VVV  K 
Sbjct: 434 PGYEDPANIIEEIDSKIDHSKVKVHKVLDRQKAIAEAISDSGPNDIVVVAGKG 486


>gi|125718538|ref|YP_001035671.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus sanguinis SK36]
 gi|166224790|sp|A3CPL6|MURE_STRSV RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|125498455|gb|ABN45121.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase,
           putative [Streptococcus sanguinis SK36]
          Length = 481

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 80/482 (16%), Positives = 151/482 (31%), Gaps = 72/482 (14%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP 84
              + IS DSR       FF +KG  +   +F+  AV  G    +  TD       + IP
Sbjct: 33  LTFDSISYDSREADASTLFF-VKGEAFK-KEFLEKAVSVGLRFYISETDF-----QVGIP 85

Query: 85  VFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V  V+DV  A++ LA+        K  ++A TG+ GKTTT       LS   +       
Sbjct: 86  VLLVNDVKQAMSLLAMEFYGHPEKKLKLLAFTGTKGKTTTAYFTYQILSQSHRPALLSTM 145

Query: 143 YNNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                G                + +    +  D    I E+  S    ++   + +   +
Sbjct: 146 NTTLDGETFFKSTLTTPESLDLIKMMAQALANDRTHLIMEV--SSQAYLKKRVYGLTFDV 203

Query: 187 AVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            V   I+P H+        E+    K  + +       + +N     F+++K +  +L  
Sbjct: 204 GVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIVNSGMDHFQIVKEQVASLEH 260

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +   +   D Q   ++   + +                             +    
Sbjct: 261 DFYGADSSNTIKDSQAFSFEATGKLAGNYDIQLIGRFNQE-------------NAVAAGL 307

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                  +              G+        G    +D ++N          ++LS + 
Sbjct: 308 ACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFVDYAHNGVS-----LRNLLSVVE 362

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALP 419
            H +G+ I +LG     GE  +    D   +L+ +    V L+         LA+ + + 
Sbjct: 363 EHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVILTADDPNYEDPLAIAEEIA 419

Query: 420 R--SIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLIN----------LLLE 466
              S  V      +       S    +GD V++        Y+++            L E
Sbjct: 420 SYISYPVEKIADREEAIKKALSLTEREGDAVILAG-KGADAYQIVEGEKVAYPGDYALAE 478

Query: 467 EF 468
           ++
Sbjct: 479 KY 480


>gi|313890708|ref|ZP_07824333.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120809|gb|EFR43923.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 461

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 151/450 (33%), Gaps = 67/450 (14%)

Query: 51  YDGHDF----ILHAV-QKGAGLV-------VVNTDMVASIGSLSIPVFGVDDVLGALNK- 97
            DG  F       A+ + G  +V       +++ D    I +  IP      V  AL K 
Sbjct: 47  NDGKAFEENPAAQALLELGIKVVCGSHPLALLDEDFELMIKNPGIPY-SNPMVEKALAKG 105

Query: 98  -----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                    A L S+A IIAITGS GKTTT  M+   L+            + +IG P +
Sbjct: 106 IPVLTEVELAYLVSEAPIIAITGSNGKTTTTTMIADVLNH----GGQSALLSGNIGYPAS 161

Query: 153 LARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +  +  D  + EL    L  +        PHIA+IT + P H+     +E   +AK 
Sbjct: 162 EVVLKAEPKDRLVMELSSFQLMGVDAFH----PHIALITNLIPTHIDYHGSLENYVAAKW 217

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +     + LN D     +L +K+ A  +              +        +   
Sbjct: 218 NIQQRMTNEDYVILNADQELTRVLASKTQAKVLY----------FSTKKEVEGAYLQGDK 267

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +    +           G H  +N L T+ +  +        +  L  F   + R    +
Sbjct: 268 LYYNGEFIMEASSIGVPGLHNVENALATIVVAKLSNIANHVIVDTLKHFGGVKHRL---Q 324

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A      T  ++S + N  +          +S   +   I + G     G    +   +
Sbjct: 325 YAGQLHDITFYNDSKSTNILAC------QKALSGFDKENLILIAG-----GLDRGNSFDE 373

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK 450
           L   +    I  + L G     ++ A   +   H  ++ +           + GD++++ 
Sbjct: 374 LVPDIK--GIKKMILIGETAGKMELAADTAGVSHSNAKDVAEATRIAFKEALAGDIILLS 431

Query: 451 ---SS---------NSCGFYRLINLLLEEF 468
              +S             F + I  L  EF
Sbjct: 432 PANASWDMYPNFEVRGDEFLKTIEDLKGEF 461


>gi|229550849|ref|ZP_04439574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|258538439|ref|YP_003172938.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus Lc 705]
 gi|229315799|gb|EEN81772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus LMS2-1]
 gi|257150115|emb|CAR89087.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus Lc 705]
          Length = 517

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 134/478 (28%), Gaps = 59/478 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQTTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    K     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTLG---------IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  + L             I          A      K     R       G  T+  +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHFQVPGHGTVYVD 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +       +  ++LS +    +  R+ V+  +   G+   S     A+VL+       
Sbjct: 375 YAHN----YASMKALLSFLKRSYKDPRLLVV--VGSPGDKGVSRRPGFAKVLTELATEAF 428

Query: 405 WLSG----FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          + + +        + VH              +    DVVVV  K 
Sbjct: 429 LTTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKG 486


>gi|256850929|ref|ZP_05556318.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260661143|ref|ZP_05862057.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|282934158|ref|ZP_06339436.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297205809|ref|ZP_06923204.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
 gi|256615991|gb|EEU21179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 27-2-CHN]
 gi|260548080|gb|EEX24056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii 115-3-CHN]
 gi|281301772|gb|EFA94038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|297148935|gb|EFH29233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii JV-V16]
          Length = 456

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 126/382 (32%), Gaps = 42/382 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IP+    +   AL+         S+A  + +TGS GKTTT  + +  +
Sbjct: 86  ENPMVQKASELKIPII--TEPEIALSA--------SEAPFVCVTGSNGKTTTVMLTSEII 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++   +     D  + E+    L         ++P +A I
Sbjct: 136 DHHLAKSGHHAYAVGNIGVPISEVVQKATKDDVLVVEISSFQLL----GVTDIKPKVAAI 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL     +E   +AK  +            N+D      + +K  A     I +
Sbjct: 192 VDIYPTHLDYHKTMENYIAAKLNVTRFQTCDEYFIANFDQK---EILSKEEATTKAKIQT 248

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F  + ++       +    QS   +++            G H  QN ++ + I  ++ A+
Sbjct: 249 FSMNDHSASYFVGDEYLESQSEKIMKISD------IKLPGRHNLQNSMVAIAISKLMGAE 302

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  LS F        R +         + ++S + N  +   AI   S+      G
Sbjct: 303 NSDIQAVLSTFAG---ARHRLQYVTTINDVKVYNDSKSTNIEAATVAIKAFSEPEVLIGG 359

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYS 427
                       G         L  +L   ++  V L G     L DA  ++    +   
Sbjct: 360 ------------GLDRGFTFDSLVPLLKK-HVKAVVLYGETRYLLADAARKAGIKEIKIV 406

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            T+             GDV+++
Sbjct: 407 NTLKEAVPVAYELTKPGDVLLL 428


>gi|199597925|ref|ZP_03211350.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|258507252|ref|YP_003170003.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
 gi|199591182|gb|EDY99263.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactobacillus rhamnosus HN001]
 gi|257147179|emb|CAR86152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Lactobacillus rhamnosus GG]
 gi|259648618|dbj|BAI40780.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Lactobacillus rhamnosus GG]
          Length = 517

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 134/478 (28%), Gaps = 59/478 (12%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILHAVQKGAGLVVVNTDMVA 76
           I       + GI+ DSR ++    FF  KG  +      ++  A   GA   V     V 
Sbjct: 23  IQTTEDVDMTGIAYDSRKVSGPTLFFC-KGDKF---RPIYLSMAKDNGARTYVAEKPYVE 78

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             G   +    V ++  A+  L+ A     +    +IA TG+ GKTT        L+  +
Sbjct: 79  GNG---LNALIVRNITKAMAILSAAFFDYPQDDLFVIAYTGTKGKTTAAYFTEAILNEAR 135

Query: 135 KTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +  + S  + +  P    R            +  D+   + E GM+HL         +
Sbjct: 136 PRHIALFSTIDTVVGPEPDQRFKSNLTTPESLDLFRDMREAV-ENGMTHLVMEVSSQAYL 194

Query: 183 R-------PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           R         +     I P H+              K ++     K              
Sbjct: 195 RNRVFGLTYDVGFFLNITPDHIGPNEHPTFANYLHNKLQLLVNARKVVINAETEHFDQVY 254

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                +       +++    K     +    +   Q     + +   + V       ++ 
Sbjct: 255 AAATTTTYPESIYLFASAGFKPKRDDIDIDFRFDSQEADVAESRFTLVPVTEKAAALNIG 314

Query: 294 QNMLMTLG---------IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  + L             I          A      K     R       G  T+  +
Sbjct: 315 GHYSLALIGDFNESNATAAIIGAGLAGVDASAAVPGIAKVKIPGRMEHFQVPGHGTVYVD 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
             +       +  ++LS +    +  R+ V+  +   G+   S     A+VL+       
Sbjct: 375 YAHN----YASMKALLSFLKRSYKDPRLLVV--VGSPGDKGVSRRPGFAKVLTELATEAF 428

Query: 405 WLSG----FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          + + +        + VH              +    DVVVV  K 
Sbjct: 429 LTTDDPGYEDPANIINEIDLKIDHTKVKVHKVLDRKEAITEAIKASGPKDVVVVAGKG 486


>gi|332295506|ref|YP_004437429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
 gi|332178609|gb|AEE14298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermodesulfobium
           narugense DSM 14796]
          Length = 464

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 105/344 (30%), Gaps = 28/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
               I +TG+ GKTT  E +       K           ++G PL+     +      + 
Sbjct: 114 GVNTIGVTGTNGKTTVTEWIGYGFEVAKM----PYYVAGNVGTPLSEIIYDIVTGSNLVL 169

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    +      +  ++P IA+IT +   H+  ++ ++E  +AK  +F+  E   +I+ 
Sbjct: 170 ELSSYQI----ENSIFLKPKIAMITNLTLDHIDRYANLDEYFNAKVHLFKNQENGYSIYN 225

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D    + +K  +    I  +           +        E              +  
Sbjct: 226 KDDPYLEKNIKNLTLKTKILNVSK--------RKDFSIAGVIENKIFVKDNLDFVKIIDL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+   L + S L                  G   R          T I++S
Sbjct: 278 SDLSLKGEHNIENALFVASSLYLSSVEPKHIEKALSTFSGVEHRQERFYTHKGITWINDS 337

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            + NP S   A+              I +LG     G+   +   +L  + S      + 
Sbjct: 338 KSTNPESTIVALKTW-----GENNNLILILG-----GKDKNTPLDELVSLASKT-CKAII 386

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G       D      ++    ++D +           D+V+ 
Sbjct: 387 LFGEAKKRFFDHFKSFPNLFVLNSLDDVIDKAFELAKPNDIVLF 430


>gi|323126663|gb|ADX23960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 436

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 67/439 (15%), Positives = 127/439 (28%), Gaps = 63/439 (14%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           FFA KG  +   +++  A+ KG  L V   D       L IPV  V D+  A++ +A+A 
Sbjct: 6   FFA-KGATFKA-EYLKEAIAKGLPLYVSEVDY-----KLDIPVVLVTDIKKAMSLIAMAF 58

Query: 103 RL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM---- 156
               + +  ++  TG+ GKTT        L    K            G     +++    
Sbjct: 59  YDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTTLDGQTFFKSQLTTPE 118

Query: 157 ------------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSG 202
                          +   I E+  S    +    + +   + V   I+P H+       
Sbjct: 119 SLDLFAMMAECVKNGMTHLIMEV--SSQAYLVGRVYGLTFDVGVFLNISPDHIGPIEHPT 176

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            E+    K  + E               F     A              +       L  
Sbjct: 177 FEDYFYHKRLLMENSRAVVINSGMDHFPFLANQVAN-------------QEHAFYGALSD 223

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +  + Q++        +       IG+   +N +        L A +    K ++    
Sbjct: 224 NQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACLRLGASLADIQKGIAKTRV 283

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                            T   + +     +  +   +LS +  H  G  + +LG     G
Sbjct: 284 PGRM--------EVLTMTNHAKVFVDYAHNGDSLEKLLSVVEEHQTGNLVLILGAPGNKG 335

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMDGLFL 435
           E  ++   D   V++ +    V L+           +   +   I   +      +    
Sbjct: 336 ESRRA---DFGAVINQHPNLTVILTADDPNFEDPEYISQEIASHITRPIDIVSDREQAIQ 392

Query: 436 FIQSSLV-DGDVVVV--KS 451
              S      D V++  K 
Sbjct: 393 KAMSLCQGPEDAVIIAGKG 411


>gi|71066607|ref|YP_265334.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
 gi|71039592|gb|AAZ19900.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter arcticus 273-4]
          Length = 584

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 82/493 (16%), Positives = 151/493 (30%), Gaps = 71/493 (14%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGS 80
                   +DSR +   EAF  +K    +     D++  A    A  ++   D +A I +
Sbjct: 68  NIPFQQFCLDSRQLIRNEAFALLKSHTPNCQKSRDYLYQAANN-AAFILSEIDPLALIAT 126

Query: 81  LSIP--------------------------VFGVDDVLGALNKLAVAARLRSK-----AT 109
            +IP                          V  V ++   L  L + ARL+ +      T
Sbjct: 127 GNIPPHANLELTPDNAKYIAQQQLDALPCPVLYVPNIRDFLGSL-IQARLQYQQRVTLPT 185

Query: 110 IIAITGSVGKTTTKEMLTIALS-SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL- 167
           ++A+TG+ GKTT  +++      +   +     + N  +G  +  +    D       L 
Sbjct: 186 VVAVTGTNGKTTISQLVAQLTQLTGMSSAVMGTAGNGRLGALVQASHTTGDTLAVQQFLH 245

Query: 168 ------------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA--SAKAEI 213
                         S  G  +     +   +A+ T ++  HL   + + E A   AK   
Sbjct: 246 QMGKEGAELLALEASSHGLDQQRLQGMPVSVAIYTNLSRDHLDYHADMAEYAAAKAKLFD 305

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWM 272
                      +N DD + +++   +HA  +K   YS   SK A F             +
Sbjct: 306 KAHFPDLTHAIINIDDEYAQIMLDTAHASHLKVWTYSLDPSKTATFVAADITPSLHGVEI 365

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +       +V H  I   +     +   + +I  A        + +        +    
Sbjct: 366 SLCTDFGDGKVNHLDIVSPLLGRFNVANLLAAIAAAVALGHKTGIDIERIIAVIPQLQGA 425

Query: 333 ALNQGFFTLIDESYNANPASMKAA-ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     D  +  + A    A   VL+ +  H +G+  AV G     G    +    
Sbjct: 426 VGRMQRVPSNDGCFIVDYAHTPDALSQVLASLKTHCKGQLWAVFG----CGGDRDTGKRP 481

Query: 392 LAEVLSLYNISHVWLSGFHVL---------ALKDALPRSI--HVHYSETMDGLFLFIQSS 440
           L     L     V L+  +            ++  +        H          +  S 
Sbjct: 482 LMAQAGLAGADKVILTADNPRTEDPNVILQDMQAGMSTEQYQRTHIESARQTAIEYAVSQ 541

Query: 441 LVDGDVVVV--KS 451
               D+VV+  K 
Sbjct: 542 AAADDIVVIAGKG 554


>gi|326333497|ref|ZP_08199738.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325948697|gb|EGD40796.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 512

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 86/495 (17%), Positives = 146/495 (29%), Gaps = 81/495 (16%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPH--------------- 50
           T  +L         G   +  V G+S+ S+ + P + + A+ G                 
Sbjct: 23  TLAELAGEFGLDVRG---EARVTGVSLSSQRVLPGDLYAALPGSRAHGAGYAAGAVEAGA 79

Query: 51  ----YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
                D           GA L       + S G   +PV  V+     L  L+       
Sbjct: 80  VAVLTD---------AAGAAL-------LESQGLGEVPVLLVEQPRKVLGALSARVYGNP 123

Query: 107 K--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--------VPLTLARM 156
                +I +TG+ GKTTT  +   AL         IG+    IG               +
Sbjct: 124 SGRLRLIGVTGTQGKTTTTRLAESALLDSGHRAGVIGTVGTRIGGRDVKTPLTTPEAPDL 183

Query: 157 PVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                  + E      + +S    +      V   +AV   +   HL     +E+  +AK
Sbjct: 184 HGLFARMVEEGTEACAMEVSSHALVMGRVDGVVFDVAVFLNLGRDHLDFHETVEDYYAAK 243

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A++F   E+     +N DD     L A+     I  +        AD++    +   + S
Sbjct: 244 ADLFT-PERAELGIVNIDDEHGRRLAAE---ATIPILTYALHDDTADWRATDIELRPDGS 299

Query: 271 WMEVQLQG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              V                 Y+++  +     I      +      A ++       G+
Sbjct: 300 SFTVHGPDGLSFPAASPLAGDYNVSNTLAALASIHHAYGDETVVRDVATALAKGSGVPGR 359

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R    Q F  ++D ++  +          L  + P  E R I V+G     G    + 
Sbjct: 360 LERIDEGQPFTVVVDYAHKPDAVEA-----ALGTLRPLTESRLIVVIGA----GGDRDTG 410

Query: 389 HIDLAEVLSLYNISHVWLSGFHVL----------ALKDALPRSIHVHYSETMDGLFLFIQ 438
              +   +S     HV ++  +             L      S  V              
Sbjct: 411 KRPIMGEISARLADHVIVTDDNPRTEDPASIRRQVLAGTTGGSASVEEIGDRRAAIERAI 470

Query: 439 SSLVDGDVVVV--KS 451
                GD+VVV  K 
Sbjct: 471 GLAQPGDIVVVAGKG 485


>gi|95930733|ref|ZP_01313466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133213|gb|EAT14879.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 448

 Score = 76.1 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 85/432 (19%), Positives = 144/432 (33%), Gaps = 66/432 (15%)

Query: 53  GHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFG-VDDVLGALNKLAVAARLR 105
           GHD    AV + A L+VV+        ++A      IPV+G V+     L          
Sbjct: 59  GHD---DAVFQQADLIVVSPGVPLTVPVLAKAIDRGIPVWGEVEYASRHLT--------- 106

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A +IAITG+ GK+TT E++   L    K          +IGVP  +     DVD+ + 
Sbjct: 107 --APVIAITGTNGKSTTTELVGQMLRGCGKRVFVG----GNIGVP-LIEAAGQDVDYVVV 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I      + P  A++  ++  HL  +  +    +AK  IF          L
Sbjct: 160 ELSSFQLETID----QLHPRYALMLNVSVDHLDRYPDMAAYVAAKKAIFANQTADDIAVL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N +D     +     +  ++        +   F       C++        Q        
Sbjct: 216 NGEDELVMAMVPGIDSRPVRFSSQRLLEQGISFTQGTIHWCNKG------EQCCFNTDEL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N++  L  V +   D + A +A   F     R    R           ++S
Sbjct: 270 MLSGLHNIENVMAALVPVLLEGCDPEQAWQAACRFTGLPHRMVLVRTLNGV---RWYNDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S++ ++  LS       G            G+     + D+        ++ + 
Sbjct: 327 KGTNLGSVEKSVGGLSAPVTLIAG------------GKDKGGDYRDI-RSALQGRVTALV 373

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVV---------VKSS--- 452
           L G     ++ A      ++ +E+M+             G VV+          K S   
Sbjct: 374 LIGQAADLMEQAWGDLCPIYRAESMEQAVDVAHKVTPSPGQVVLSPGCSSFDMFK-SFEE 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGERFSEAVRAL 444


>gi|289522908|ref|ZP_06439762.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503932|gb|EFD25096.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 453

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 123/382 (32%), Gaps = 44/382 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    II +TG+ GK+TT  ++   LS +        +   + G PL       D+
Sbjct: 93  FVFPFLTGKIIGVTGTNGKSTTSALIAHLLSKLGY----KTALAGNFGFPLADF-AKQDL 147

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           DF   E+    L      +      IAV+T I P HL      +    +K  I + L   
Sbjct: 148 DFIAAEISSFQLHWANRFSCH----IAVVTNICPDHLDWHGSFKAYVESKKRIIDLLSSD 203

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G       +   ELL+       +    S         + +      +            
Sbjct: 204 GYCVYQ--NKDRELLRTNGCRGAVLRWAS--DCSTGKCEEQDEIILHDSEAYLRTESRDI 259

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               +  +  +   N+  T   ++ +      A +   +    +    R      +   T
Sbjct: 260 KLFSYSILPLYGRHNVENTAMAMTAVYYLGCDAERTSHLLSDFKNLPHRCEKVGEKKGIT 319

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N AS   AI+ +        G ++ +LG     G+     + +LA+     +
Sbjct: 320 FIDDSKGTNVASSITAITSI-------PGTKVIILG-----GKGKGEQYDELAK-AVKAH 366

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSS------ 452
                L G    A+ +AL  +   +     +M+       +    GD+V++  S      
Sbjct: 367 ARGAVLLGAEKGAISEALESAGFRNYILVSSMEEAVYCAFNMACPGDIVLL--SPACTSW 424

Query: 453 --------NSCGFYRLINLLLE 466
                       F R++  ++E
Sbjct: 425 DMYKNYHERGEDFKRIVKTIVE 446


>gi|296110395|ref|YP_003620776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
 gi|295831926|gb|ADG39807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc kimchii IMSNU 11154]
          Length = 491

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 89/484 (18%), Positives = 160/484 (33%), Gaps = 63/484 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL     H +   P+     + +  D+R +     F  +KG       F    + +
Sbjct: 7   TIQQLLN--DEHLLVSKPEVTQTFDFLHYDTRQVKANTLFV-VKGA------FRPEYLTQ 57

Query: 64  --GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGK 119
             G   +V  T +      +S+P + V DV  AL+ L++A     +    I A TG+ GK
Sbjct: 58  TDGVSGLVTETRL-----DVSLPQWQVTDVQKALSILSMAFFGYPQHDLWIGAFTGTKGK 112

Query: 120 TTTKEMLTIALSSIKKTY-------------ACIGSYNNHIGVPLTL---ARMPVDVDFG 163
           TT   M    L +    +                    + +  P +      M   VD G
Sbjct: 113 TTAAYMAYNILKNTTDKHVALFSTVDRITGNNSEDKKKSDLTTPESYELFKDMRRSVDNG 172

Query: 164 IFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219
           +  L M  S    ++   + +R ++     I+P H+        E+  + K  +F+  ++
Sbjct: 173 MTHLVMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLAHKLMLFDHSDQ 232

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +   S       ++H L      +                 S  + +   L+  
Sbjct: 233 VIINAESDHLSEIMTHAKQTHDLVYTYSLAGKGGAYTYTSQESAIHESRLTVLPSDLKAL 292

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +     +  G     N +  L + ++  A  D  I+ L         G+     ++    
Sbjct: 293 AGHYRLNLPGDFNESNAMAALIMSALAGASHDNMIRGLDE---VFIPGRMLSLPISGHGV 349

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T +D ++N   ASM A +       P  EGR + V+G     G    S   D   V+S  
Sbjct: 350 TFVDYAHN--YASMHALLRFAQNQYP--EGRVLVVVGSP---GNKGVSRRADFGRVVSEL 402

Query: 400 NISHVWLSGFHVLA-----LKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
               V+L+           +   +   I      VH+            S   + D+V+V
Sbjct: 403 -ADVVYLTADDPQFESPMVIAKEIASHITSETLEVHFEMNRIQAINQAISQATEKDIVIV 461

Query: 450 --KS 451
             K 
Sbjct: 462 AGKG 465


>gi|253828104|ref|ZP_04870989.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511510|gb|EES90169.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 478

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 122/345 (35%), Gaps = 28/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGI 164
              TIIA+TGS GKT+ K  L   L    K YA   S N   G+       +    D  I
Sbjct: 153 PNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYI 212

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +         
Sbjct: 213 VEAGARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKVYN 272

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +                     +G        +         +   +   G+ M+  
Sbjct: 273 YKDNTP---------------PQNFYGNMIWFPQNVSSVDTSLNGTSFSLTYNGEKMDFE 317

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +        +  IK +        R       +      ++D+
Sbjct: 318 TKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLS----KIMVNDKVILDD 373

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYN N   M  AI     +S   +GR++ V   + E    S+  +I LAE +        
Sbjct: 374 SYNGNLDGMLEAIR----LSSLYDGRKVIVTPGLVE---SSKEANIALAEAIDRV-FDIA 425

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     L             +    +   ++S+ + GD+++ 
Sbjct: 426 IITGELNSKLLKEHIHKPQKIILKDKKNMENILKSATMAGDLILF 470


>gi|116075053|ref|ZP_01472313.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
 gi|116067250|gb|EAU73004.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. RS9916]
          Length = 511

 Score = 75.7 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 66/484 (13%), Positives = 134/484 (27%), Gaps = 46/484 (9%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG- 64
           T H LLQA+        P   +  ++ DSR  +    F  + G   DG  F    +  G 
Sbjct: 4   TLHSLLQAVGLPVPEGCPNPAITALTCDSRCASNGSLFLGLPGERVDGGSFWRQTLADGA 63

Query: 65  ------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
                 +   + +    A    +                 A       + T+I +TG+ G
Sbjct: 64  AAAVIGSAAALADPPSPADPVVVVADPVA---DWAGALAAAFWQYPSRRMTLIGVTGTNG 120

Query: 119 KTTTKEMLTIALSSIKK--------TYACIGSYNNHIGVPLTLARMPVDVDFG------I 164
           KTTT  ++      I +             G             R+   +         +
Sbjct: 121 KTTTTHLIEHICDQIGRSAALFGTLVNRWPGHSITSTHTTAFADRLQAQLAEAVAGGTQV 180

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-----EGLEK 219
             + +S     +      +   AV T +   HL     ++    AKA +F         +
Sbjct: 181 AAMEVSSHALDQGRVAGCQFSAAVFTNLTQDHLDYHPSMQAYFEAKARLFAEPLLMAEGE 240

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQLRKWKQCSEQSWMEVQLQG 278
                +N DD + + L  +      +      +     +  +      S     E+    
Sbjct: 241 GARAVVNVDDPWGQKLADQLGERCWRCSLEPERHPGGVELTMTDLTMTSAGVSGEIVTPA 300

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G     N+L  +G++      +   ++A + F    GR +R     +   
Sbjct: 301 GRGAFQSPLVGAFNLMNLLEAVGVLVQQGMPLALVLQAAACFKGVPGRMERV-MLGSDQA 359

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +         +     + L    P  +G  + V G     G             ++ 
Sbjct: 360 MADLPSVLVDYAHTPDGLRNALLASRPFVKGDLVCVFG----CGGDRDRGKRPQMAAVAA 415

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +            +   +P    +            + +     D+V++
Sbjct: 416 ELSDRVVVTSDNPRTEDPQQILDDVVAGIPAEASLVVDVDRASAIADVIAEAGADDLVLI 475

Query: 450 --KS 451
             K 
Sbjct: 476 AGKG 479


>gi|239502056|ref|ZP_04661366.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB900]
          Length = 448

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|169634628|ref|YP_001708364.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii SDF]
 gi|260556380|ref|ZP_05828599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
 gi|169153420|emb|CAP02557.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii]
 gi|260410435|gb|EEX03734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ATCC 19606]
          Length = 455

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 218 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +        
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYA-----K 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 381 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|161596204|gb|ABX73864.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           053442]
          Length = 451

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 46  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 96

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 97  HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 153

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 154 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 208

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 209 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 265 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 324

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 325 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 380

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 381 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 438

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 439 RVPAALLE 446


>gi|167043605|gb|ABZ08299.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 455

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 119/383 (31%), Gaps = 45/383 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A        A IIAITGS GKTTT E+L        +          ++G P +    
Sbjct: 103 EVASWF---CDAHIIAITGSNGKTTTTELLGHLFRKAGRN----TFVCGNVGRPFSDDTD 155

Query: 157 PVDVDFGIF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIF 214
               D  +  E+    L  I       RP ++++  I P HL  ++  I+  A++K  I 
Sbjct: 156 RTGPDDLVVLEVSSFQLDHID----SFRPDVSILLNITPDHLDRYNQDIDRYAASKLRIC 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E      T   N DD        K     I    S  +   A   LR             
Sbjct: 212 ENQTGVDTFIFNQDDERIARFVRKRARGPIALGISITEEIRATGFLRNSDLML------R 265

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               +   +    +      N+  +L            +          EG   R     
Sbjct: 266 INDQEENLMPTEKLALRGRHNVFNSLAAAVAARVAEVRSDVVRESLRSFEGVPHRLEIVR 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +      I++S   N  ++  A+   ++      G            G    + +  L +
Sbjct: 326 DIDGVRYINDSKATNVNALWYALESFTEPVVLIAG------------GRDKGNDYSGL-K 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
            L    +  +   G    A++  L   +     +E++D            GDVV++    
Sbjct: 373 SLVQTRVRALITIGEAAEAIQAELGEFTADGVTTESLDEAVRLAHLLARPGDVVLLSPAC 432

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F ++++ L
Sbjct: 433 ASFDMFDSYEHRGDQFKQIVSNL 455


>gi|289549042|ref|YP_003474030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
 gi|289182659|gb|ADC89903.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermocrinis albus
           DSM 14484]
          Length = 422

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 132/411 (32%), Gaps = 53/411 (12%)

Query: 70  VNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V+T +++     S P++   V   +  + +L +A R   + T IAITG+ GK+TT  +  
Sbjct: 45  VDTLVLSPGIPPSHPIWQEAVRKGIEVIGELELAWR-FFEGTAIAITGTDGKSTTTRLSY 103

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
           + L S             +IGVP +   M       + E+               RPH+ 
Sbjct: 104 LILRSYFSHV----EEGGNIGVPFSYLVMKNPKALAVLEVSSFQ----GKTLKTFRPHVG 155

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
                +  HL     + +   +K  IF        I LN                     
Sbjct: 156 AFLNFSEDHLDWHPDLRDYLWSKYNIFSRQTPEDWILLNGTQKVTR------DTPSPARK 209

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             FG            +   ++       +          IG H   N L+   I  I+ 
Sbjct: 210 VFFGD---------GCEAHVKEDGAYWSEEKLFSVEDIKLIGKHNLYNALVACVIGRIMG 260

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   + L  F     R        + G   + ++S +  P +      + + +    
Sbjct: 261 VPTDRMKEVLRDFRGLPHRL---ELVGDFGGVLVYNDSKSTTPNA------LQAALGSMP 311

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +GR I + G     G+   +    L  +++   + H  L G     + DA      V  +
Sbjct: 312 DGRVILIAG-----GKDKGASFEHLCPLVTQ-KVKHAVLIGEAKRRIADAWKGCTQVSLA 365

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
            ++D      Q     GD+++     SS             F +L+  + E
Sbjct: 366 SSLDEAIRMAQREAKPGDILLFSPACSSFDMFSNYEERGETFKKLVREIFE 416


>gi|242309201|ref|ZP_04808356.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
 gi|239524242|gb|EEQ64108.1| d-alanyl-d-alanine-adding enzyme [Helicobacter pullorum MIT
           98-5489]
          Length = 489

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 24/345 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGI 164
              TIIA+TGS GKT+ K  L   L    K YA   S N   G+       +    D  I
Sbjct: 160 PNLTIIAVTGSYGKTSLKNFLIQVLQDDFKVYATPRSINTLTGIIADINQNLSPLTDIYI 219

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G   +G+I+ +  L++P IAV+  I PAH+  F  +E I   K EI +         
Sbjct: 220 VEAGARGVGDIKEIVELIKPQIAVVGKIGPAHIEYFKTMENIYQVKYEILQSDRLER--- 276

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     +  ++       I   GK       + +     E +   +   G+ +++ 
Sbjct: 277 --------AYIYKENTKPEAFNIEFQGKVICFPQNISEINADLEGTSFVLTENGEKIQLE 328

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +   L    +  IK +        R       +      ++D+
Sbjct: 329 TKVLGAFNVINISAAIAVAKDLGVSKNQIIKQVQKLERVNHRLS----KIVVNDKIILDD 384

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYN N   M  AI     ++    GR++ V   + E    S+  ++DLA  +        
Sbjct: 385 SYNGNLEGMLEAIR----LASLHTGRKVIVTPGLVE---SSKEANVDLARAIDKV-FDIA 436

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     +             +    +   ++S+   GD+++ 
Sbjct: 437 IITGELNSKILKEFIYRPQKIILKDKANMESVLKSATQAGDLILF 481


>gi|224419171|ref|ZP_03657177.1| D-alanyl-D-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313142677|ref|ZP_07804870.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
 gi|313131708|gb|EFR49325.1| d-alanyl-d-alanine-adding enzyme [Helicobacter canadensis MIT
           98-5491]
          Length = 485

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 122/345 (35%), Gaps = 28/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGI 164
              TIIA+TGS GKT+ K  L   L    K YA   S N   G+       +    D  I
Sbjct: 160 PNLTIIAVTGSYGKTSLKNFLVQVLQDEFKVYATPRSVNTLTGIIADINQNLSSLTDIYI 219

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G   +G+I+ +  L++P IAVI  I PAH+  F  ++ I  AK EI +         
Sbjct: 220 VEAGARRIGDIKEIVELIKPQIAVIGKIGPAHIEYFKSLDNIYKAKYEILQSPNLQKVYN 279

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +                     +G        +         +   +   G+ M+  
Sbjct: 280 YKDNTP---------------PQNFYGNMIWFPQNVSSVDTSLNGTSFSLTYNGEKMDFE 324

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +        +  IK +        R       +      ++D+
Sbjct: 325 TKILGAFNVANISAAIQVAKDFGISSERIIKQVCRMEGVSHRLS----KIMVNDKVILDD 380

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           SYN N   M  AI     +S   +GR++ V   + E    S+  +I LAE +        
Sbjct: 381 SYNGNLDGMLEAIR----LSSLYDGRKVIVTPGLVE---SSKEANIALAEAIDRV-FDIA 432

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     L             +    +   ++S+ + GD+++ 
Sbjct: 433 IITGELNSKLLKEHIHKPQKIILKDKKNMENILKSATMAGDLILF 477


>gi|94991840|ref|YP_599939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
 gi|94545348|gb|ABF35395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus pyogenes MGAS2096]
          Length = 353

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 31/248 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++L A   H            +S DSR +  +  FFA KG  +   D++  A+  G 
Sbjct: 16  NFREVLDADGYHYHYQG--LSFERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGL 71

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTK 123
            L +   D       L IPV  V D+  A++ +A+A     + K  ++A TG+ GKTT  
Sbjct: 72  QLYISEVDY-----ELGIPVVLVTDIKKAMSLIAMAFYGNPQEKLKLLAFTGTKGKTTAA 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARM----------------PVDVDFGIFEL 167
                 L    K            G     +++                   +   I E+
Sbjct: 127 YFAYHMLKESYKPAMFSTMNTTLDGKTFFKSQLTTPESLDLFAMMAECVTNGMTHLIMEV 186

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFL 225
             S    +    + +   + V   I+P H+        E+    K  + E          
Sbjct: 187 --SSQAYLVDRVYGLTFDVGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSG 244

Query: 226 NYDDSFFE 233
               SF  
Sbjct: 245 MDHFSFLA 252


>gi|325128839|gb|EGC51698.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           N1568]
          Length = 469

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 93/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++VIT I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVITNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|311693453|gb|ADP96326.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [marine bacterium
           HP15]
          Length = 446

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 116/375 (30%), Gaps = 43/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GKTT   ++     +  +      +   +IG P     +    D
Sbjct: 103 FAEAADAPIVAITGSNGKTTVTTLVGEMAKAAGRNV----AVGGNIGTPALDL-LGQGAD 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L        A +  ++  H+  +        AK  IF G +   
Sbjct: 158 LYVLELSSFQLETTDELNA----LAATVLNLSDDHMDRYPNKMAYFQAKQRIFRGCKNAI 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          +   A        FG     + +    +   + +W+        +
Sbjct: 214 VNLDDA--------LSTPMARDNLRFLCFG-FHRVNPETFSTRDDDQGTWITFGFDNLLL 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G+H   N++  L +       +D  ++    F     R               
Sbjct: 265 ASELKLMGHHNISNVMAALALGHAAGLPMDVMLRVAREFPGLPHRC---EFVRRLNDVDF 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +  AAI  L+      +G+ + + G   +  + +        E     + 
Sbjct: 322 INDSKGTNVGATVAAIESLAP----DKGKVVLIAGGDGKGADFTA------LEAPIALHC 371

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G    A+ D L   I VH   ++           + GD V++    +S      
Sbjct: 372 RAVLLIGRDAPAIADVLGSGIPVHRVGSLAEAVSRSAELAMPGDRVLLSPACASFDMFRD 431

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 432 YLDRGDQFRSLVEAL 446


>gi|109892723|sp|Q3IFY1|MURC_PSEHT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 148/457 (32%), Gaps = 55/457 (12%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGH--DFILHAVQKGA 65
           ++L        G       +    D R I    E F         GH  + +  A     
Sbjct: 36  EVLAFEGYRITGSD---IAHSAMTD-RLIKAGAEVFI--------GHHENNVKDA----N 79

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +VV +     +   ++     V  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 80  VVVVSSAIDETNPEIIAAKAARVPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSL 135

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +        I     +              DF I E   S    +      ++P 
Sbjct: 136 IASIYAQAGLDPTFIIGGLLNS---AGSNAKVGKSDFLIAEADESDASFLH-----LQPM 187

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++VIT I   H+  +   +E++     +    L   G   +  D      L  +     I
Sbjct: 188 VSVITNIEEDHMETYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVASELIPRFGRPVI 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
               ++G+S +AD+++  + Q +      V  +         +  G H A N    + + 
Sbjct: 248 ----TYGESSDADYRMSDFSQSANTCKFTVTNKQGESLTATLNMPGKHNALNATAAIAVA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     ++AL  F     R + Y    N+    ++ + Y  +P+ + A I+   + 
Sbjct: 304 KDQNIANFAILEALQKFEGIGRRFQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREG 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
            P        V+         ++  + D  +VL+   +  + L            G    
Sbjct: 364 WPDK----RLVMVYQPHRFTRTRDLYEDFVKVLAE--VDQLLLLDVYSAGEEPIVGADSK 417

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +L  +L  R     +      L   +   L + D+V+
Sbjct: 418 SLCRSLRQRGKEPRHVANSAELASVLADCLQNNDLVL 454


>gi|300774251|ref|ZP_07084118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300758930|gb|EFK55759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 457

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 117/407 (28%), Gaps = 50/407 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +V ++    IPV G         + A      + A +  ITGS GK+TT  +    L 
Sbjct: 87  APLVVALKQKGIPVIG-------EIEFAAQY---TNARLYCITGSNGKSTTTMLTYYILQ 136

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         +IG    L       D  + E+    L       +  R  +AVI  
Sbjct: 137 KAGVNV----GLAGNIGRSFALQVAQEKFDVYVLEISSFMLD----DMYQFRADVAVILN 188

Query: 192 IAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +   +E    +K  +              DD        + H        + 
Sbjct: 189 ITPDHLDRYDHKMENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEAAIWPMTQ 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +  N    L + K     +      Q           G H   N +    +  +     
Sbjct: 249 EQVINPGAYLDQEKNIIINT--PKGEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRN 306

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +  +++S +     R +   C         I++S   N  S+  A+   S        +
Sbjct: 307 RSMQESMSSYVNIPHRLEHVACIGGVN---YINDSKATNVNSVWYALESFSP-------Q 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SET 429
            + ++G + +  +       ++   L    +  +   G     + ++      V   S +
Sbjct: 357 IVLIMGGVDKGNDY------EMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVIVNSSS 410

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           M             GD V++    +S             F   +  L
Sbjct: 411 MKDAVEIASHIAQKGDTVLLSPACASFDWFKNYEERGDKFKEAVMAL 457


>gi|254382597|ref|ZP_04997955.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
 gi|194341500|gb|EDX22466.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. Mg1]
          Length = 567

 Score = 75.7 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 16/199 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
            V GI+ DSR++ P + + A+ G    G DF   A   GA  V+ +        +  +PV
Sbjct: 85  PVTGITHDSRAVRPGDLYAALPGAKLHGADFAAQAAALGAAAVLTDPAGADRAAATGLPV 144

Query: 86  FGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V D  G + +LA     R       + ITG+ GKTTT  ++   L    ++   +G+ 
Sbjct: 145 LAVADPRGRMGELAAEIYGRPGEGLLQLGITGTSGKTTTAYLVEGGLRGAGRSTGLVGTV 204

Query: 144 NNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVR------------PHIAVI 189
              IG     +    P   D       M   G       +                +AV 
Sbjct: 205 EMRIGDERIKSERTTPEATDLQALFAVMRERGVEAVAMEVSSHALVLGRVDGCVFDVAVF 264

Query: 190 TTIAPAHLSNFSGIEEIAS 208
             ++P H+   S +E+   
Sbjct: 265 NNLSPEHMEFHSDMEDYFQ 283


>gi|90655385|gb|ABD96226.1| UDP-N-acetylmuramyl-tripeptide synthetase [uncultured marine type-A
           Synechococcus GOM 3M9]
          Length = 511

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/486 (13%), Positives = 130/486 (26%), Gaps = 57/486 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH------ 59
           T H LL+ +       +P   +  I+ DSR++     F  + G   DG  F         
Sbjct: 4   TLHALLRQVAWQIPEGLPDPLLQQITCDSRAVQDGTLFLGLPGERVDGGRFWRQALEAGA 63

Query: 60  ---AVQKGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
               +   A  V+     + V  +G               L +LA A   +  + +  I 
Sbjct: 64  AAAVIGPSAAAVLPPAAHEPVVVVGEPVARQ---------LGELAAAFWEQPSSRLALIG 114

Query: 115 G----------------SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                            +    T   +    ++                           
Sbjct: 115 VTGTNGKTTTTHLIEHLATAIGTPTALFGTLVNRWPGHSITATHTTGFADRLQGQLAAAA 174

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                +  + +S     +      R   AV T +   HL   + ++    AKA +F    
Sbjct: 175 SAGAQLGAMEVSSHALAQQRVAGCRFAAAVFTNLTQDHLDYHASMQAYFEAKAALFADPL 234

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                     +S        +  LG +   S      A+ ++   +  +      +    
Sbjct: 235 LQSGPARAVVNSDDPWGLQLAERLGDRCWRSSLSEPGAELRMSDLEMTARGVRGRLITPL 294

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                V   +G     N+L  +G++      +   ++A+  F    GR +R         
Sbjct: 295 GEGPFVSPLLGRFNLMNLLQAVGVLVQCQLPLMPLLEAIEGFRGVPGRMERVLLPGADAH 354

Query: 339 --FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T++ +  +          + L+   P   GR I V G     G             +
Sbjct: 355 ALPTVLVDYAHTPDG----LENALAASRPFSRGRLICVFG----CGGDRDRGKRPQMASI 406

Query: 397 SLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +      V ++  +            +   +P                   ++    D+V
Sbjct: 407 AARLADRVVVTSDNPRTEDPQRILEDVVAGIPDGTDSLVEGDRAAAIAAAIAAAAPEDLV 466

Query: 448 VV--KS 451
           +V  K 
Sbjct: 467 LVAGKG 472


>gi|225872736|ref|YP_002754193.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
 gi|254766033|sp|C1F460|MURD_ACIC5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225794452|gb|ACO34542.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acidobacterium
           capsulatum ATCC 51196]
          Length = 461

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 115/354 (32%), Gaps = 31/354 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLAR 155
           +LA       K   +AITGS GKTTT  +    L    +          +IG+P + L  
Sbjct: 100 ELAARFL---KGKTLAITGSNGKTTTTSLCGAILERAHQHVQVG----GNIGLPVIALVD 152

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + E+    L          RP IAVI  I P HL      E   +AK  IF 
Sbjct: 153 DSRDDGWSVLEISSFQLETTERF----RPGIAVILNITPDHLDRHGSFENYVAAKERIFA 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  + LN DD         +     +  +                    ++  +  
Sbjct: 209 AQTHDDALILNADDDAASR---AAARASSRIFWFSRNRVIRQGAFVHEGNILFRAAEDAA 265

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H  +N+L  +    +     +    A+  F   E R         
Sbjct: 266 TEPILPLSEIPLKGAHNVENVLAAVCAARLAGVSAEAIRDAVRDFRAVEHRL---EFVAE 322

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  +  ++S   N  + + AI           G    +LG     G+   S +  L  +
Sbjct: 323 IGGVSFYNDSKATNVDAARKAIEAF-------PGGIHLILG-----GKDKNSDYRTLRPL 370

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  V+  G     +   L  ++ +  + T+D        +   GDVV++
Sbjct: 371 MAGR-VKAVYTIGSAAEKIMTHLDGAVPLIAAGTLDLAVNLAGGAASPGDVVLL 423


>gi|160933177|ref|ZP_02080566.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
 gi|156868251|gb|EDO61623.1| hypothetical protein CLOLEP_02021 [Clostridium leptum DSM 753]
          Length = 492

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 115/383 (30%), Gaps = 50/383 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                   I A+TGS GKTTT  +++  L +  KT         +IG PL          
Sbjct: 140 FFDLCPCRIYAVTGSDGKTTTTTIISEMLKAAGKTVHLG----GNIGCPLLPKVEEIRKD 195

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     ++    P +AV+T +AP HL     ++E   AK  I       
Sbjct: 196 DVAVVELSSFQL-----ISMRKSPDVAVVTNLAPNHLDIHKDMQEYIDAKKNIILHQNAF 250

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   LN D+     L                 S            C     +  +  G  
Sbjct: 251 GRAVLNLDNEITRGLAPLVRGE---------LSYFTRQHTTDRGVCLNGGAICHRRNGVV 301

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             ++          + +              +  +   V     G   R     N     
Sbjct: 302 SRIMDVKDIRIPGNHNVENYMAAIAAVWGEVSPEQMRQVAESFPGVEHRAEFVRNVDGAD 361

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    +    L           I + G     G   +  +  +  V++   
Sbjct: 362 YYNDSIASSPTRTISGTLSLYSQK------IILIAG-----GYDKKIPYDAMGPVVNE-K 409

Query: 401 ISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--- 450
           +  + L G     ++ A+       P++I +   E M+            GDVV +    
Sbjct: 410 VKLLILMGNTADKIQSAVTKAENYDPQAIRIIRVENMEEAVETAHRLAQKGDVVSLSPAS 469

Query: 451 ---------SSNSCGFYRLINLL 464
                    ++    F +L+N L
Sbjct: 470 ASFDLYPNFAARGNHFKQLVNAL 492


>gi|145220556|ref|YP_001131265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prosthecochloris
           vibrioformis DSM 265]
 gi|189082914|sp|A4SH04|MURD_PROVI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145206720|gb|ABP37763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 465

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 137/389 (35%), Gaps = 42/389 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           ++A       +A I+ ITG+ GKTTT  ++    ++             +IGVP +    
Sbjct: 100 EVASWF---CRARIVGITGTDGKTTTATLVHDIAAAEGSLRGNRAWGVGNIGVPFSAMVG 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
              + D  + EL    L          RP ++V+T I P HL  +   +E  A+AK  I 
Sbjct: 157 EMEEGDTAVVELSSYQL----ERCVTFRPDVSVLTNITPDHLGRYDGSMERYAAAKFRIC 212

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS-----KNADFQLRKWKQCSEQ 269
              ++  T+  N DDS  E           +  +S  +       +    LR  +    +
Sbjct: 213 MNQKEGDTLIYNADDSLLEEHFGGGAFPFRRVPFSLEEPPSAGVMHDGVFLRDGEIVVAR 272

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              E ++      + +   G H   N L  + +   L          L  F     R + 
Sbjct: 273 DGGERRVARTDGFLKNSFRGRHNIYNALAAVAVSEALGIGDGVVRDGLGAFQGVRHRQQF 332

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R          I++S   N  +M+ A+  +       EG+ + + G     G    + +
Sbjct: 333 VRRLGGAD---WINDSKATNVNAMRQALEAV-------EGKIVLIAG-----GRDKGNDY 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +++   +  +   G     L +A      +  + +++G     +++  +G  V+ 
Sbjct: 378 RPVLPLVAE-KVELLLSIGESRALLAEAFKGVARIQEAASLEGAVSLARAAAGEGWTVLF 436

Query: 450 ---KSS---------NSCGFYRLINLLLE 466
               +S             F + +N L E
Sbjct: 437 SPGCASFDMFRNFEERGDHFMQCVNSLEE 465


>gi|213155698|ref|YP_002317743.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|215484924|ref|YP_002327163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|301346529|ref|ZP_07227270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB056]
 gi|301512504|ref|ZP_07237741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB058]
 gi|301594847|ref|ZP_07239855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AB059]
 gi|332851488|ref|ZP_08433485.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332866813|ref|ZP_08437217.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
 gi|226711875|sp|B7H1N2|MURD_ACIB3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711876|sp|B7I325|MURD_ACIB5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213054858|gb|ACJ39760.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB0057]
 gi|213988566|gb|ACJ58865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           baumannii AB307-0294]
 gi|332729941|gb|EGJ61272.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013150]
 gi|332734421|gb|EGJ65541.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6013113]
          Length = 448

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFGPLRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|169797488|ref|YP_001715281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii AYE]
 gi|169150415|emb|CAM88312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii AYE]
          Length = 455

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 107 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 162 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 218 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 270 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 327 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFGPLRSSIEKYA-----K 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 381 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 427


>gi|229270471|ref|YP_975688.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           FAM18]
 gi|229597116|ref|YP_001599824.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           053442]
 gi|189029221|sp|A9M2H2|MURC_NEIM0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325198895|gb|ADY94351.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           G2136]
 gi|325202766|gb|ADY98220.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240149]
          Length = 468

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 114 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 171 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 226 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 342 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 397

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 398 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 455

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 456 RVPAALLE 463


>gi|288574849|ref|ZP_06393206.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570590|gb|EFC92147.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 453

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 118/379 (31%), Gaps = 45/379 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               +    ++ +TG+ GKTTT  ++   L         +G+  + +G      R     
Sbjct: 100 FVLPKLDGKVVVVTGTNGKTTTTSLIAHLLEVSGLDALALGNIGSPLGDFAGERR----- 154

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L             I+VIT IAP H+      E   SAK +       T
Sbjct: 155 DVFVIELSSFQLHWTEKS----EFDISVITNIAPDHIDWHGSYENYISAKKKAISHRRDT 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   +          K +S   G     + G +   D +       + +  + V    + 
Sbjct: 211 GWSIVQE--------KDRSLLGGQSDPRTIGLTLENDLKK-DGIFINNERAIAVIEGVRH 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +   +      N+       +         I         +    R +  + +   +
Sbjct: 262 DLFMSKQVPLLGGHNIENAAMAATACILSSSRKIDWSMGLASYQAPPHRCQFIVEKDGIS 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +D+S   N AS   A+  +        G ++ +LG     G+     + +LA +    N
Sbjct: 322 YVDDSKGTNVASTCTALRSI-------PGGKVVILG-----GKGKGENYRELA-LAVKDN 368

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVK-------- 450
             +  L G    A+ DAL       +   E+M+   +        GD V++         
Sbjct: 369 CRYAILLGEERFAIADALKEQNVTDWQMVESMEEAVVKASRRAKRGDTVLLSPACTSWDM 428

Query: 451 -SS---NSCGFYRLINLLL 465
             S       F  L   + 
Sbjct: 429 YGSYRERGDHFSGLAKAIE 447


>gi|325132969|gb|EGC55646.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M6190]
 gi|325136990|gb|EGC59587.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M0579]
          Length = 506

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 436 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 494 RVPAALLE 501


>gi|163752979|ref|ZP_02160103.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
 gi|161326711|gb|EDP98036.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kordia
           algicida OT-1]
          Length = 446

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 103/345 (29%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+ ITGS GKTTT  +    L   +           ++G            D  + E
Sbjct: 103 DAMIVGITGSNGKTTTTMLTHHVLKEGELNV----GVAGNMGDSFAKQVAEQSYDTYVLE 158

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L          +P IA+IT I P HL  +    E   ++K  I     K   +  
Sbjct: 159 LSSFQLD----GIIDFKPRIAIITNITPDHLDRYDYKFENYIASKFRIAMNQTKDDYLIY 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + DD        K         +S          L             + +         
Sbjct: 215 DADDEVVTNWMKKHPVKSTLIPFSLKNKLENGAYLENENIILTIQNKTITMP----TDSL 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +    +  +L     T  +++S F   E R       L       I++S
Sbjct: 271 ALEGKHNVKNAMAASAVAQLLNIRKQTIRESMSGFQGVEHRL---EKVLKIQNVQYINDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++  +    G            G    + + DL  ++    +  + 
Sbjct: 328 KATNINATYYALESMTTQTVWIVG------------GVDKGNDYSDLLPLVHE-KVKAII 374

Query: 406 LSGFHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
             G     + ++  R   +    T M+            GD V++
Sbjct: 375 CLGVDNSKIIESFGRVADLMVETTSMEEAVKIAHKIAEKGDNVLL 419


>gi|157415066|ref|YP_001482322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386030|gb|ABV52345.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 81116]
 gi|315931213|gb|EFV10185.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 475

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    ++ ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKIDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYELCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|114321341|ref|YP_743024.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311123|sp|Q0A6K3|MURC_ALHEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114227735|gb|ABI57534.1| UDP-N-acetylmuramate--L-alanine ligase [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 479

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 146/401 (36%), Gaps = 37/401 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           +GA  VVV++ + A    +         V  V  A   LA   R R     IA+ G+ GK
Sbjct: 77  QGADAVVVSSAVQADNPEVQAAREYRIPV--VRRA-EMLAELMRFRYG---IAVAGTHGK 130

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L+        +     +               + + E   S    +    
Sbjct: 131 TTTTSLVASVLAEGGLDPTYVIGGRLNSSASHARLG---SGRYLVAEADESDASFLH--- 184

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++P +AV+T I   HL  +    +++     E    L   G   L +DD     L  +
Sbjct: 185 --LKPMMAVVTNIDADHLETYGGDFDQLRHTFDEFLHHLPFYGLAVLCHDDPVLRDLGPE 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 + + S+G +++AD +    +Q   ++   V     +  V  +  G H  QN L 
Sbjct: 243 I----ARQVRSYGFAEDADLRAVDIEQSGRRTRFTVVDGEATFPVEVNLPGRHNVQNALA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L  DV    +AL  F     R + +           + + Y  +P  + A + 
Sbjct: 299 AIAVARELHVDVAAIQRALQRFQGIGRRFQDHGTLRFGDARVTLVDDYGHHPREIAATLR 358

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------ 409
               +     GRR+ V+         ++    D A VLS  +   ++ V+ +G       
Sbjct: 359 A---VRDGWPGRRVLVVFQPHRY-SRTRDLFEDFARVLSEADALLVTEVYAAGEPPVAGA 414

Query: 410 HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
               L  A+     V+  + ET++ L   +     DGD+V+
Sbjct: 415 TGRGLCAAIRARGQVNPVFVETLEELQQVLPGVARDGDLVL 455


>gi|238855274|ref|ZP_04645593.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|260664633|ref|ZP_05865485.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|282932433|ref|ZP_06337858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
 gi|313471909|ref|ZP_07812401.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|238832166|gb|EEQ24484.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 269-3]
 gi|239529167|gb|EEQ68168.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 1153]
 gi|260561698|gb|EEX27670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           jensenii SJ-7A-US]
 gi|281303382|gb|EFA95559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           jensenii 208-1]
          Length = 456

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 124/382 (32%), Gaps = 42/382 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IP+    +   AL+         S+A  + +TGS GKTTT  + +  +
Sbjct: 86  ENPMVQKASELKIPII--TEPEIALSA--------SEAPFVCVTGSNGKTTTVMLTSEII 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++   +     D  + E+    L         ++P +A I
Sbjct: 136 DHHLAKSGHHAYAVGNIGVPISEVVQKATKDDVLVVEISSFQLL----GVTDIKPKVAAI 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL     +E   +AK  +            N+D      + A+  A     I +
Sbjct: 192 VDIYPTHLDYHKTMENYIAAKLNVTRFQTSDEYFIANFDQK---EILAQEQATTKAKIQT 248

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F  + ++       +    QS      +           G H  QN ++ + I  ++ A+
Sbjct: 249 FSMNDHSASYFVGDEYLESQS------EKIMKIADIKLPGKHNLQNSMVAIAISKLMGAE 302

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  LS F        R +         + ++S + N  +   AI   S+      G
Sbjct: 303 NSDIQAVLSTFAG---ARHRLQYVTTLNNVKIYNDSKSTNIEAATVAIKAFSEPEVLIGG 359

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYS 427
                       G         L  +L   ++  V L G     L DA  ++    +   
Sbjct: 360 ------------GLDRGFTFDPLVPLLKE-HVKAVVLYGETRYLLADAARKAGIKEIKIV 406

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            T+             GDV+++
Sbjct: 407 NTLKEAVPTAYKLTQPGDVLLL 428


>gi|58337117|ref|YP_193702.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus NCFM]
 gi|227903691|ref|ZP_04021496.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
 gi|62900453|sp|Q5FKV3|MURD_LACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|58254434|gb|AAV42671.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           acidophilus NCFM]
 gi|227868578|gb|EEJ75999.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus ATCC 4796]
          Length = 459

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 122/413 (29%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IP+    +   AL+         S A  + ITGS GKTTT  +    L
Sbjct: 86  ENPMVKKAEELDIPII--TEPEVALSC--------SDAPYVCITGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         ++P +A I
Sbjct: 136 DHHLQKTGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E    AK  +            N+D      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVDAKLNVTRTQNSDDYFIANFDQKD---ILAKEKEVSPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F +                  ++E Q +           G H  QN L+ + I  ++ A
Sbjct: 249 TFSE------TDHNADYFIGDEYLESQDEKIMKIADIKLPGVHNLQNSLVAIAIAKLMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D +     LS F   + R            +    +       S    I   +   P  +
Sbjct: 303 DNEDIAAVLSTFTGAKHR----------LQYVTTLDGRKIYNDSKSTNIEAATVAIPAFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 353 EPEVLIAG-----GLDRGFTFDDLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKEIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAYELTEPGDVILFSPACASWDQFRTFEERGDYFVRFVEELKTK 459


>gi|218768809|ref|YP_002343321.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           Z2491]
 gi|325203530|gb|ADY98983.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240355]
          Length = 468

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 114 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 171 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 226 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 342 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 397

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 398 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 455

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 456 RVPAALLE 463


>gi|332522873|ref|ZP_08399125.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314137|gb|EGJ27122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 452

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 83/422 (19%), Positives = 139/422 (32%), Gaps = 55/422 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKT 120
           L +++ D    I +  IP      V  AL K          A L S+A IIAITGS GKT
Sbjct: 66  LALLDEDFELMIKNPGIPY-SNPMVEKALAKGIPVLTEVELAYLVSEAPIIAITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLT 179
           TT  M+   L+              +IG P +   +  +  D  + EL    L  ++   
Sbjct: 125 TTTTMIADVLN----HGGQSALLAGNIGYPASEVALKAEAKDRLVMELSSFQLMGVKAFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IA+IT + P HL     +EE  +AK  I + + +   + LN D      L +K+
Sbjct: 181 ----PQIALITNLMPTHLDYHGSLEEYVAAKWNIQQRMTEEDYVILNADQELTSTLASKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +              +        +   +                G H  +N L T
Sbjct: 237 KAKVLY----------FSTKKEVEGAYLKGGKLYYNGDFIMEASSIGVPGLHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +           L  F   + R    + A      T  ++S + N  +       
Sbjct: 287 IVVAKLSHIANPVISDTLKHFGGVKHRL---QYAGQLQDITFYNDSKSTNILAC------ 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S   +   I + G     G    +   +L   +    I  + L G     +K A  
Sbjct: 338 QKALSGFNKKNLILIAG-----GLDRGNSFDELVPDIK--GIKKMILIGETTDKMKLAAE 390

Query: 420 -RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466
              +    ++ +             GD++++    +S             F + I  L  
Sbjct: 391 MAEVSYSSAKDVADATRLAFKGANAGDIILLSPANASWDMYPNFEVRGDEFLKTIEDLKG 450

Query: 467 EF 468
           EF
Sbjct: 451 EF 452


>gi|254282164|ref|ZP_04957132.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
 gi|219678367|gb|EED34716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR51-B]
          Length = 441

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 127/408 (31%), Gaps = 54/408 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +V       + V G  D+   + +        + A +I ITGS GK+T  EM+   L
Sbjct: 73  DHPLVDRALKAGVRVIG--DIDLFMAE--------ANAPVIGITGSNGKSTVTEMVAAIL 122

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +         +   ++G P     +    D  + EL    L     L       +A + 
Sbjct: 123 RASGSAV----AVGGNLGTPALDL-LEHPADIYVLELSSFQLERSEKLGL----AVATVL 173

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I+  HL     +     AK  IF G         N  D     L  +   + +      
Sbjct: 174 NISADHLDRHGSMPRYHQAKHRIFRGARTV---VANRADPLTVPLLEEKADVVVWRDG-- 228

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 D +    +    +  +       +        G H   N L  + + S    D 
Sbjct: 229 ----EPDLREFGTRVVDGEVMLCRGFDTLAAATELPLPGRHNLANALAAMAVASAAGVDD 284

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  L  FH    R    R          I++S   N  + +AA+  L      G G 
Sbjct: 285 EQLVPGLKHFHGLPHRCALVRELDGI---RFINDSKGTNIGATRAALEGL-----GGNGN 336

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            + + G + +  + ++       +  +      V   G     ++ AL  ++     ET+
Sbjct: 337 VVLIAGGVGKGQDFTE------LQASAEQRCRRVLTVGESAREIELALGATVPCQRVETI 390

Query: 431 DGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLINLLLE 466
           +      +     GD+V++             ++    F   +  L E
Sbjct: 391 EQAVTRGRELAKAGDIVLLSPACASFDQFSGYAARGLAFEEAVKALQE 438


>gi|86152106|ref|ZP_01070318.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124318|ref|YP_004066322.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85840891|gb|EAQ58141.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018040|gb|ADT66133.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 475

 Score = 75.3 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKVDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYELCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|326692780|ref|ZP_08229785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc argentinum KCTC 3773]
          Length = 495

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 73/481 (15%), Positives = 139/481 (28%), Gaps = 57/481 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-HYDGHDFILHAVQKG 64
           T   LL A              + +  D+R +  Q  F  +KG       +++  A   G
Sbjct: 7   TIEQLLTAHHLLVAKPDSDQTFDFLHYDTRQVKDQTLFV-VKGAFRV---EYLAQAT--G 60

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTT 122
              +V        +  + +P + V DV  AL+ L++A     ++   I A TG+ GKTT 
Sbjct: 61  VTGLVTEE-----LLPVDLPQWQVTDVQKALSVLSMAFFDYPQNDLWIGAFTGTKGKTTA 115

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE---- 166
             M    L  +   +  + S  + I                    +  D+   +      
Sbjct: 116 AYMAFQILQHMTNQHTALFSTVDRITGNQPADKKKSDLTTPESYELFKDMRRAVDNGMTH 175

Query: 167 --LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S    ++   + +   +     I+P H+        E+  + K  + +  E+   
Sbjct: 176 LVMEVSSQAYLKQRVYGLEFQVGAFLNISPDHIGPNEHPSFEDYLAHKMMLLDHAEQVIV 235

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +   S         H        +    +     L      S  +  E  L   +  
Sbjct: 236 NAASDQLSAVLAHAKTHHDHVYTYSQTDQGGEYTYQSLESAIHESRFTVAESDLAEMNGT 295

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G     N L  L + ++  A     +  L                    F    
Sbjct: 296 YRLNLPGDFNESNALAALIMTALAGAQHADMVAGLDTVFIPGRMLSLPIPDHGVAFVDYA 355

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
               +           +    S + +G+   V+G     G    S   D   V+S +   
Sbjct: 356 HNYAS-------MRALLQFAQSQYPDGKVSVVIGAP---GNKGVSRRADFGRVVSEFA-D 404

Query: 403 HVWLSGFHVL-----ALKDALPRSI-----HVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
            V+L+          A+   +   I      VH+            +     D+V+V  K
Sbjct: 405 TVFLTADDPQFESPMAIAKEIAAHITNPDVTVHFEMDRIQAIQQAIAQANPHDIVIVAGK 464

Query: 451 S 451
            
Sbjct: 465 G 465


>gi|189029013|sp|A1KVL2|MURC_NEIMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120867149|emb|CAM10916.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis FAM18]
 gi|254671167|emb|CBA08261.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha153]
 gi|261391937|emb|CAX49399.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis 8013]
 gi|317164855|gb|ADV08396.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           TCDC-NG08107]
 gi|325134890|gb|EGC57523.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M13399]
 gi|325138957|gb|EGC61507.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           ES14902]
 gi|325142977|gb|EGC65334.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           961-5945]
 gi|325208762|gb|ADZ04214.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           NZ-05/33]
          Length = 469

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|297250431|ref|ZP_06934038.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
 gi|296838889|gb|EFH22827.1| UDP-N-acetylmuramate--alanine ligase [Neisseria polysaccharea ATCC
           43768]
          Length = 469

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 149/428 (34%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYPDK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|307747707|gb|ADN90977.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 475

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RTNENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    ++ ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKIDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYELCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|11272240|pir||A81777 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) NMA2061 [imported]
           - Neisseria meningitidis (strain Z2491 serogroup A)
 gi|121052817|emb|CAM09164.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis Z2491]
 gi|308388625|gb|ADO30945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           alpha710]
 gi|319411048|emb|CBY91448.1| UDP-N-acetylmuramate-L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Neisseria
           meningitidis WUE 2594]
          Length = 506

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 436 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 494 RVPAALLE 501


>gi|184156588|ref|YP_001844927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii ACICU]
 gi|332874928|ref|ZP_08442779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
 gi|226711877|sp|B2I1V6|MURD_ACIBC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183208182|gb|ACC55580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           baumannii ACICU]
 gi|322506475|gb|ADX01929.1| murD [Acinetobacter baumannii 1656-2]
 gi|323516354|gb|ADX90735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332736871|gb|EGJ67847.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Acinetobacter
           baumannii 6014059]
          Length = 448

 Score = 74.9 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 115/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G +K   
Sbjct: 155 LVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGAKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDADGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKRFKGLEHRC---EYVKTVRDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   +  + S      + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGKGQDFSP-LRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELCQRETQAEDVVLL 420


>gi|238908349|emb|CAZ40334.1| putative UDP-N-acetylmuranoylanalyl-D-2-6-diaminoligase [Raphanus
           sativus]
          Length = 871

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 5   WTFHDLL---QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF--ILH 59
            +  +LL   + +     G +    + GI  DSR ++  + F        DG D   +  
Sbjct: 341 LSLAELLDESKVVPISVYGDL-DVEITGIQHDSRGVSAGDLFVCC-----DGGDDSVLSE 394

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A ++GA  VV + ++          +  V+D    L  LA +        +  I
Sbjct: 395 ADKRGAVAVVASKEIDIEDTLGCRALVIVEDTEAVLAALASSFYRHPSKDMAVI 448


>gi|25008815|sp|Q9JSZ8|MURC_NEIMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|325130849|gb|EGC53582.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           OX99.30304]
          Length = 469

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|326330650|ref|ZP_08196954.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
 gi|325951491|gb|EGD43527.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Nocardioidaceae bacterium Broad-1]
          Length = 496

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 133/381 (34%), Gaps = 33/381 (8%)

Query: 83  IPVFGVDDVLGALN-------KLAVAA-------RLRSKATIIAITGSVGKTTTKEMLTI 128
           +P+  V     AL         +A            +    I+AITGS GKT+TK   T 
Sbjct: 124 LPILAVPLAEAALAIMWPIEKAMAKKWQVQAAATIKKVNPKIVAITGSYGKTSTKNYATH 183

Query: 129 ALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
            +     T A   S+NN +G+      R+    D  + E+G    GEI  LT +  P +A
Sbjct: 184 LMQGRWSTLASPASFNNAMGLSRAVNDRLQPGTDIFVAEMGTYGPGEIAELTEIFPPEVA 243

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            ITTI  AHL      E I  AK+EI     K  T+ LN D     L+     A      
Sbjct: 244 AITTIGEAHLERMKSRETIVKAKSEIL---PKASTVVLNIDVPELALIAENLRASKRVIA 300

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S      A+  +   K         V+L  +               N+ + +G+   + 
Sbjct: 301 CSAVPGTAAEVLVTDGKLTINNETYAVELPDEVG----------HPINVAIAVGLALAVE 350

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++T  + L+       R +  R          + +    +  +  AA    ++     
Sbjct: 351 VPIETITQRLASIPGTPHRAEANRTPGG----VWVIDDTFNSNPTGAAAALAKAKRLAGE 406

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G    +   M E+G    + +I+ A+  +  +   + + G        A          
Sbjct: 407 SGTVWTITPGMVELGTEQAARNIEFAQAATASDKMQLCIVGRTNRKALRA-GDPARTTAF 465

Query: 428 ETMDGLFLFIQSSLVDGDVVV 448
           ++         ++  +GDVV+
Sbjct: 466 DSRKAAADHALTAAKEGDVVL 486


>gi|293610054|ref|ZP_06692355.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827286|gb|EFF85650.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 448

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 116/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGMLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFGPLRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|87199153|ref|YP_496410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|118595671|sp|Q2G997|MURD_NOVAD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|87134834|gb|ABD25576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 443

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 122/424 (28%), Gaps = 73/424 (17%)

Query: 66  GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             VVV+         +     +  +PV G  D+       A          ++ ITG+ G
Sbjct: 66  AGVVVSPGVPLNRHPIADHARAAGVPVIG--DIELFAQARA----DLPPHRVVGITGTNG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++    ++             +IG+P+       +    + EL    +   + L
Sbjct: 120 KSTTTMLVHHICAAAGL----PARLGGNIGLPILGQEPLPEGGVYVLELSSYQIDLTQSL 175

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                  +A +  ++P HL  + G    A++KA +F              D     +  +
Sbjct: 176 AC----DVAALINLSPDHLDRYDGFAGYAASKARLFAMQRADQHAVFGCGDEHTLEIARE 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A                            +     +Q  ++             N+  
Sbjct: 232 ASAT-------------------------HDTGFVHVVQPSALHGQLEWPSLQGPHNLQN 266

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
               V I            S      G   R            +++S   NPAS   A+ 
Sbjct: 267 AAIAVEIARQLGIAEDIWRSALASFVGLPHRMERVAEANGVLFVNDSKATNPASTAPALG 326

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              +I          +LG     G        + A      ++   +  G       + L
Sbjct: 327 AYPRI--------HWILG-----GLPKSDNLDECAPYFD--HVVAAYTIGEAGPRFAEIL 371

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
              + V  SE +         +   GDVV++    +S             F +++  L+E
Sbjct: 372 EPVMPVTRSEMLCDAVRQAMEAAQPGDVVMLSPACASFDQFRDFEARGDSFRQIVEALIE 431

Query: 467 EFPA 470
           +  A
Sbjct: 432 DREA 435


>gi|30248992|ref|NP_841062.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
 gi|60390554|sp|Q82VS5|MURD_NITEU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30138609|emb|CAD84900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosomonas
           europaea ATCC 19718]
          Length = 471

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 90/419 (21%), Positives = 143/419 (34%), Gaps = 36/419 (8%)

Query: 34  SRSIAPQE-AFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV 91
           SR I P E  F   +K   + G D I  A+  G     V   +V +     +PV G  D+
Sbjct: 47  SR-IVPGEAIFCGPLKEELFQGIDAI--AISPGVA---VAEPLVQAALQQGVPVIG--DI 98

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
              L  +A+         I+AITGS GKTT   M+   + +       +        +  
Sbjct: 99  E--LFAVALDQYAPPGTKILAITGSNGKTTVTSMVGEMVKNAGWDVE-VAGNIGPAALDA 155

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            + RM  +    ++ L +S        T  +RP  A +  ++  HL  +  IEE A+AKA
Sbjct: 156 LMQRMDANKWPHLWALELSSF--QLETTSSLRPDAATVLNLSEDHLDRYDSIEEYAAAKA 213

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF      G + +   D         + A       +FG S     +           W
Sbjct: 214 RIFSRPHNNGCVQILNRDDARVY----AMADKNSKQVTFGLSAPVSDEEFGLLPGGSDVW 269

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H A N L  L +   +    +  + AL  F     R    +
Sbjct: 270 LAQGSTHLLKTSELAVAGLHNAANALAALALCRAVDLPFEPLLHALRTFRGLPHRM---Q 326

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   T  D+S + N  S  AA++             I + G   +  + S      
Sbjct: 327 KVAEFNGVTFYDDSKSTNIGSAVAALNGFR-------KNVILIAGGDGKGQDFSP----- 374

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             E     ++  V L G     +  A+   ++ +H   TMD            GDVV++
Sbjct: 375 -LEQPVSKHVRSVVLLGRDADKVAQAIQASNVPIHRVTTMDEAVQVSFLLAEHGDVVLL 432


>gi|283957222|ref|ZP_06374684.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
 gi|283791294|gb|EFC30101.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 1336]
          Length = 475

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 270 AFLHSSTKKEEDKLISLYDDKLNLIHSSL-----------------EGLEFKVDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGVKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYELCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|222153421|ref|YP_002562598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           uberis 0140J]
 gi|254766059|sp|B9DUV7|MURD_STRU0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222114234|emb|CAR42820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           uberis 0140J]
          Length = 453

 Score = 74.9 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 83/419 (19%), Positives = 140/419 (33%), Gaps = 55/419 (13%)

Query: 51  YDGHDF-----ILHAVQKGAGLV-------VVNTDMVASIGSLSIPVFGVDDVLGALNK- 97
            DG  F         +++G  +V       +++ D    + +  IP      V  AL+K 
Sbjct: 38  NDGKAFEENPAAQSLLEEGIKVVCGSHPLELLDEDFAVMVKNPGIPY-QNPMVEKALSKG 96

Query: 98  -----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                    A L S+A IIAITGS GKTTT  M+   L+            + +IG P +
Sbjct: 97  IPVLTEVELAYLISEAPIIAITGSNGKTTTTTMIADVLN----HGGKSALLSGNIGFPAS 152

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              M     D    EL    L  I+       PHIA+IT + P HL      +    AK 
Sbjct: 153 EVAMTASQDDILTMELSSFQLMGIK----DFHPHIALITNLMPTHLDYHGSFDAYIQAKW 208

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I   +     + LN +    + L  K+ A     +Y   K K         K   +   
Sbjct: 209 NIQNNMTADDVLILNAEQDQTKELAQKTQAS---LVYFSSKEKVEGAYQEDGKLFYKG-- 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +           G H  +N L T+ +  +         + LS F   + R    +
Sbjct: 264 -----EYIMDAQSLGVPGLHNVENALATIAVAKLSGISNQAIAETLSSFGGVKHRL---Q 315

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S + N  +          +S     + I + G     G    +    
Sbjct: 316 KLGTIKDVAFYNDSKSTNILAC------QKALSGFDNNKVILIAG-----GLDRGNAFDT 364

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           L   +    +  + L G     +K+A  R+   +  ++ +             GD++++
Sbjct: 365 LIPDIK--GLKKMILLGESAEKMKEAAERAGVGYLEAKDVADATRIAFEQAQPGDIILL 421


>gi|149007559|ref|ZP_01831194.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
 gi|147760918|gb|EDK67888.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Streptococcus pneumoniae SP18-BS74]
          Length = 353

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 84/244 (34%), Gaps = 37/244 (15%)

Query: 1   MNPLWTFHDLLQAIQ--------GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYD 52
           M  + T  D+L+           GH      +   + IS DSR +     FFA KG  + 
Sbjct: 1   MIKIETVLDILKKDGLFREIIDQGHYHYNYSKVIFDSISYDSRKVTEDTLFFA-KGAAFK 59

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATI 110
             +++L A+ +G    V   D       + IPV  V+D+  A++ +A+      + K  +
Sbjct: 60  -KEYLLSAITQGLAWYVAEKDY-----EVDIPVIIVNDIKKAMSLIAMEFYGNPQEKLKL 113

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLA 154
           +A TG+ GKTT        LS   +            G                  +   
Sbjct: 114 LAFTGTKGKTTATYFAYNILSQGHRPAMLSTMNTTLDGETFFKSALTTPESIDLFDMMNQ 173

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAE 212
            +  D    I E+  S    +    + +   + V   I P H+        E+    K  
Sbjct: 174 AVQNDRTHLIMEV--SSQAYLVHRVYGLTFDVGVFLNITPDHIGPIEHPSFEDYFYHKRL 231

Query: 213 IFEG 216
           + E 
Sbjct: 232 LMEN 235


>gi|309379069|emb|CBX22371.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 480

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 149/428 (34%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 75  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 126 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 182

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 183 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 237

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 238 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFEVVLNMPGR 293

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 294 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 353

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 354 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 409

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 410 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 467

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 468 RVPAALLE 475


>gi|126663232|ref|ZP_01734230.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
 gi|126624890|gb|EAZ95580.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteria bacterium BAL38]
          Length = 444

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 117/380 (30%), Gaps = 39/380 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +V  +    IPV        +  + A+     ++A  + ITGS GKTTT  +    L 
Sbjct: 75  APIVKKLLEKDIPVI-------SEIEFAIQF---TQAKTVGITGSNGKTTTTLLTYHVLK 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         +IG            D  + EL    L          +P+IA+IT 
Sbjct: 125 EAGLNV----GLAGNIGKSFAWQVAENKHDIYVLELSSFQLD----GVFNYKPNIAIITN 176

Query: 192 IAPAHLSNFSGIEE-IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I+P HL  ++       ++K  I +   +   +  + +D   +     +     K  +S 
Sbjct: 177 ISPDHLDRYNYDYSLYINSKFRITKNQTEADYLIYDNEDEAIKNWLKNNTIKANKVPFSL 236

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A+            +                  G H  +N +    +  +L    
Sbjct: 237 TTKPEAEGGFLDEN---NMNSTINNDTFTMPINELALEGKHNIKNAMAATAVAQLLNIRK 293

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            T  ++L+ F        R    L       I++S   N  S+  A+  ++  +    G 
Sbjct: 294 QTIRESLTNFQG---AEHRLEKVLKIQGVQYINDSKATNVNSVFYALDSMTTPTVWIVG- 349

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET- 429
                      G    + + +L  ++    +  +   G     + +     + +    T 
Sbjct: 350 -----------GVDKGNDYDELMPLVRE-KVKAIVCLGVDNTKISNTFNNVVDIMVETTS 397

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M       Q     GD V++
Sbjct: 398 MAEAVQIAQRLAEKGDSVLL 417


>gi|89891769|ref|ZP_01203271.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
 gi|89515924|gb|EAS18589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, Mur [Flavobacteria
           bacterium BBFL7]
          Length = 452

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 136/426 (31%), Gaps = 49/426 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD I   +      VVV +  +    ++   +   +  + +  + A       +   IA
Sbjct: 62  GHD-IEQILNAD---VVVKSPGIPDNATIVQKIIEANIPVISEIEFASRFSDEVE---IA 114

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GKTT   ++   L               +IG            ++ + E+    L
Sbjct: 115 ITGSNGKTTVTSLIGHILQIANYDVTIG----GNIGQSYAAQVAESPAEYRVLEVSSFQL 170

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             I+      +P +AV+  I P HL  +    E   ++K  I    ++   +  N DD  
Sbjct: 171 DGIK----TFKPKVAVLLNITPDHLDRYDYKFENYVASKMRIAMNQDENDFLIYNADDPT 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            +    +         +S  ++      ++  +           +  +         G H
Sbjct: 227 IQEAIIQFKPKSKLVPFSMQQALEYGAFIKDQQININLDTNLFTMPIQ----KLSIKGQH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N +       +L    +T  ++L+ F   E R       L       I++S   N  
Sbjct: 283 NTANAMAAATTAKLLQIRKETIRQSLASFQGVEHRL---EQVLKINKVQYINDSKATNVN 339

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +   A+  + + +    G            G    + + DL  +++  N+  +   G   
Sbjct: 340 ATYYALDSMEKPTVWIVG------------GVDKGNNYSDLFALVNK-NVKAIVCLGNDN 386

Query: 412 LALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFY 458
             + +A    + ++  + +M+            GD V++    +S             F 
Sbjct: 387 SKIVEAFSGCVDNMVETSSMEDAVRVAYKLAGPGDNVLLSPACASFDLFENYEDRGRQFK 446

Query: 459 RLINLL 464
             +  L
Sbjct: 447 NAVRAL 452


>gi|254673375|emb|CBA08647.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           alpha275]
          Length = 429

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 24  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 74

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 75  HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 131

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 132 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 186

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 187 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 242

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 243 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 302

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 303 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 358

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 359 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 416

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 417 RVPAALLE 424


>gi|227538299|ref|ZP_03968348.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241814|gb|EEI91829.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 457

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 117/407 (28%), Gaps = 50/407 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +V ++    IPV G         + A      + A +  ITGS GK+TT  +    L 
Sbjct: 87  APLVVALKQKGIPVIG-------EIEFAAQY---TDARLYCITGSNGKSTTTMLTYYILQ 136

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         +IG    L       D  + E+    L       +  R  +AVI  
Sbjct: 137 KAGVNV----GLAGNIGRSFALQVAQEQFDVYVLEISSFMLD----DMYQFRADVAVILN 188

Query: 192 IAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +   +E    +K  +              DD        + H        + 
Sbjct: 189 ITPDHLDRYDHKMENYVDSKFRMIRNQTANDYFIYCLDDEETVKGLERHHTEATIWPMTQ 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +  N    L + K     +      Q           G H   N +    +  +     
Sbjct: 249 EQVINPGAYLDQEKNIIINT--PKGEQFIMNTEDLSLQGKHNVYNNMAAGLVAKVQELRN 306

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +  +++S +     R +   C         I++S   N  S+  A+   S        +
Sbjct: 307 RSMQESMSSYVNIPHRLEHVACIGGVN---YINDSKATNVNSVWYALESFSP-------Q 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SET 429
            + ++G + +  +       ++   L    +  +   G     + ++      V   S +
Sbjct: 357 IVLIMGGVDKGNDY------EMLRDLVRSKVRAIICIGKDNTRIHESFEEDTDVIVNSSS 410

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           M             GD V++    +S             F   +  L
Sbjct: 411 MKDAVEIASHIAQKGDTVLLSPACASFDWFKNYEERGDKFKEAVMAL 457


>gi|218893505|ref|YP_002442374.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa LESB58]
 gi|218773733|emb|CAW29547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa LESB58]
          Length = 448

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADTVPCWSFGLNKP-DFKAFGLIEEDGQKWLAFQFDKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFPGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|15599610|ref|NP_253104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAO1]
 gi|152985250|ref|YP_001350322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PA7]
 gi|254238923|ref|ZP_04932246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|254244775|ref|ZP_04938097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|296391123|ref|ZP_06880598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa PAb1]
 gi|30316126|sp|Q9HVZ9|MURD_PSEAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|9950646|gb|AAG07802.1|AE004856_13 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PAO1]
 gi|126170854|gb|EAZ56365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa C3719]
 gi|126198153|gb|EAZ62216.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa 2192]
 gi|150960408|gb|ABR82433.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa PA7]
          Length = 448

 Score = 74.5 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADTVPCWSFGLNKP-DFKAFGLIEEDGQKWLAFQFDKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|219558135|ref|ZP_03537211.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
 gi|289570274|ref|ZP_06450501.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
 gi|289544028|gb|EFD47676.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Mycobacterium tuberculosis T17]
          Length = 163

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 21/148 (14%)

Query: 340 TLIDESYNANPASMKAAISVLSQIS--PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
           T+ID+ YNANP SM+A +  L+ I+  P    R  AVLG+M E+GE + + H  +  +  
Sbjct: 9   TVIDDVYNANPDSMRAGLQALAWIALQPEATRRSWAVLGEMAELGEDAIAEHDRIGRLAV 68

Query: 398 LYNISHVWLSGF------------------HVLALKDALPRSIHVHYSETMDGLFLFIQS 439
             ++S + + G                      A  D       V+     D     +++
Sbjct: 69  RLDVSRLVVVGTGRSISAMHHGAVLEGAWGSGEATADHGADRTAVN-VADGDAALALLRA 127

Query: 440 SLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            L  GDVV+VK+SN+ G   + + L+ +
Sbjct: 128 ELRPGDVVLVKASNAAGLGAVADALVAD 155


>gi|107100001|ref|ZP_01363919.1| hypothetical protein PaerPA_01001022 [Pseudomonas aeruginosa PACS2]
          Length = 448

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADSVPCWSFGLNKP-DFKAFGLIEEDGQKWLAFQFDKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|325124219|gb|ADY83742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 448

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 116/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +      K      +   ++G P     +    + 
Sbjct: 100 RRATDVPIVAITGSNAKSTVTTLIGLMAKDAGKKV----AVGGNLGRPALDL-LKDQPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L       +AV+  ++  HL     +     AK  IF+G++K   
Sbjct: 155 IVLELSSFQLETTSHLNA----EVAVVLNMSEDHLDRHGNMLGYHQAKHRIFQGVKKVVF 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          ++        + SFG +     Q    +      W+   LQ     
Sbjct: 211 NRDDA--------LSRPLVPDTTPMQSFGLNAPDLNQYGVLRDGDGTLWLARGLQRLIKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R                
Sbjct: 263 SDLYIQGMHNVANALACLALGEAIGLPMESMLETLKQFKGLEHRC---EYVKTVHDVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L       +G+   +LG   + G+        + +        
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEVKKGKVALILGGQGK-GQDFGPLRSSIEKYA-----K 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G     ++ A+  +  + ++ T+       Q      DVV++
Sbjct: 374 VVVLIGEDAPVIEQAIQGATKILHAATLKEAVELSQRETQAEDVVLL 420


>gi|149186204|ref|ZP_01864518.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
 gi|148830235|gb|EDL48672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           SD-21]
          Length = 429

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 115/420 (27%), Gaps = 76/420 (18%)

Query: 66  GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             VVV+         +     S  +PV    D+       A          ++ ITG+ G
Sbjct: 66  AGVVVSPGVPLNTHPIKPHADSFGVPVI--SDIELFAQARA----DLPPHKVVGITGTNG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++   L +         +   +IG+P+       +    + EL    +     L
Sbjct: 120 KSTTTALVHHILETAGV----PTTMGGNIGLPILEQEPLPEGGVYVLELSSYQID----L 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T+ +   +AV+  I P HL  + G  E                             L+  
Sbjct: 172 TYSLDCDVAVLLNITPDHLDRYDGNFEKYQ-----------------------ASKLRLF 208

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                     +    +  D     W     +          S        G H  QN   
Sbjct: 209 EMQASQHAAVTENVHRYPDDPTDVWGPWDSEDRARDARPLGSQRDWPTLQGPHNGQNAFA 268

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    +   +AL  F     R               +++S   N A+   A++
Sbjct: 269 AIEVAYELELSEEAVSRALRTFPGLPHRM---ERIAEIAGVAYVNDSKGTNTAASAPALA 325

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDA 417
               I          V G   E G         L E  +    +   +  G         
Sbjct: 326 AFHNI-------HWIVGGLAKEPG---------LGECEAELGLVKAAYTIGKAGPDFAAL 369

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           L   + V   E++D       +    GD V++    +S             F  L+  L 
Sbjct: 370 LDGRVPVEQCESLDRAVTSAAAKAEAGDTVLLSPACASFDQYADFEKRGDHFRELVERLK 429


>gi|269213849|ref|ZP_05982991.2| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
 gi|269145192|gb|EEZ71610.1| UDP-N-acetylmuramate--alanine ligase [Neisseria cinerea ATCC 14685]
          Length = 469

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIESAGAQMKFTVHVQMKGHEQEPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448


>gi|70732386|ref|YP_262142.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf-5]
 gi|81174950|sp|Q4K6J1|MURD_PSEF5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68346685|gb|AAY94291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf-5]
          Length = 448

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 132/375 (35%), Gaps = 42/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AI+GS  K+T   ++    ++  K      +   ++G P     +  DV+
Sbjct: 103 FARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  I+  H+  +SG+     AK  IF G  +  
Sbjct: 158 LYVMELSSFQLETTDQLGA----EVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         ++FG SK  DF+    ++   + ++  + Q    
Sbjct: 214 FNRQDA--------LTRPLIGEGLPCWTFGLSKP-DFKAFGLREEDGEKYLAFEFQNLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F   E R +  R          
Sbjct: 265 VRELKIRGAHNQSNALAALALGHAVGLPFDAMLAALRTFAGLEHRCQWVRDLDGVA---Y 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    EG+ + + G   + G   +     +A      N 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIEGKIVLIAGGDGK-GADFKDLRGPVA-----ANC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     + +A+  ++ +    ++       +++   GDVV++    +S      
Sbjct: 373 RAVILMGRDSDQIGEAIGDAVPLIRVGSLQEAVEQCRATAQPGDVVLLSPACASFDMFKN 432

Query: 453 ---NSCGFYRLINLL 464
                  F R++  L
Sbjct: 433 YEDRGHQFVRIVEEL 447


>gi|268679675|ref|YP_003304106.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617706|gb|ACZ12071.1| Mur ligase middle domain protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 476

 Score = 74.5 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 72/347 (20%), Positives = 126/347 (36%), Gaps = 30/347 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDF 162
            R    +IAIT S GKT+ K  L   LS     Y    S N   G+   +   +P   D 
Sbjct: 151 QRPSMKVIAITASYGKTSIKNFLASILSKEFNVYHTPRSVNTLAGIVKDINNDLPDTCDI 210

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G    G+I  +   V PHIAV+  I   H+  F  +E I + K E+         
Sbjct: 211 YIVEAGARMQGDIDEIARCVNPHIAVVGRIGEQHIEYFKTLENIRNTKMEMIHSNRLQK- 269

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                       +   +      TI SFG       ++++ K   +     + L+GK   
Sbjct: 270 ----------AFIHESAQIKETPTILSFG------SEIKEVKASLDGLTFSMLLEGKEEH 313

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   A N+   + +   L   ++   +A+      E R ++           +I
Sbjct: 314 FSASLLGDFNAINLAACVHVARELGMSIEMIQEAMRELKGVEHRLQKIEAGGK----III 369

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S+N N   M ++  ++     H EGR++ V   + E  E +     +  + +      
Sbjct: 370 DDSFNGNLEGMLSSYELV----SHYEGRKVIVTPGIVESTEEANKCLAEKIDAI----FD 421

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V ++G   + + D   +            L   +      GD+++ 
Sbjct: 422 VVIITGKSNMPILDLHVKRAQKILLSDKSELQALLAEQTYAGDLILF 468


>gi|295696465|ref|YP_003589703.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
 gi|295412067|gb|ADG06559.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus tusciae
           DSM 2912]
          Length = 454

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 70/409 (17%), Positives = 112/409 (27%), Gaps = 45/409 (11%)

Query: 57  ILHAVQKGAGLVV-------VNTDMVASIGSLSIPVFGVDDVLGAL-------NKLAVAA 102
                + GA LVV        +      + +  +P      V  A+        +L VA 
Sbjct: 48  ANELARMGARLVVGGHPESLFDQPWDEVVKNPGVPYSAHP-VAEAIRRGIPVVTELEVAW 106

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVD 161
           R+R +  +         T  K   T  +  + +          +IGVP   +       +
Sbjct: 107 RIRPENWLGI-----TGTNGKTTTTSWVGHMLEVAGVPHRVAGNIGVPLCDVVEAIDSEE 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L          RPHI  I  I PAHL    G+E  A+AK  +F       
Sbjct: 162 WLVAELSSFQLQGTLRF----RPHIGAILNIYPAHLDYHGGLEAYAAAKKNMFVNQGPED 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN        L A   A   +                      +        +    
Sbjct: 218 YAVLNGGRKDEHQLMAGVRARPARFGGPRRPGVPGMAVEGDRVLWWDGFRA----EPVCA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L    +  +  A +     +   F   E R             T 
Sbjct: 274 VGDVALPGEHNLENFLAAGTLAVLAGASLSAVATSGRTFRGVEHRM---EFVRQWQGVTF 330

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   NP +   A+    +      G            G      +  L  +L    +
Sbjct: 331 YNDSKATNPEAAFRALGAFPKNVIWIAG------------GLDRGDDYRRLLPLLQEGRV 378

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G     +        I V     ++       S    GDVV++
Sbjct: 379 KTVLTMGQSGPRIAALAQEVGIPVRRVADVEEAVRIAVSLARGGDVVLL 427


>gi|269215182|ref|ZP_05987878.2| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
 gi|269208127|gb|EEZ74582.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ATCC
           23970]
          Length = 469

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 149/428 (34%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCVDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDAADIYATDIENVGAQMKFTVHVQMKGHEQESFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+   LLE
Sbjct: 457 RVPAALLE 464


>gi|229496695|ref|ZP_04390409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316592|gb|EEN82511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 452

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 119/385 (30%), Gaps = 40/385 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A          + AITGS GKTTT   +T  L +         +   ++G  +     
Sbjct: 94  EFASRYLPE-DTKVAAITGSNGKTTTVNWVTHILKTAGYD----AAMCGNVGFSMARLVA 148

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
                + + E+    L      T+   P+++V+  I P HL  +    E  A +K  I +
Sbjct: 149 EDPHKYYVVEMSSFQLD----GTYKFHPNVSVLLNITPDHLDRYKHKFELYALSKMRITQ 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L K  +     +D+F +    +         +S   S          +    ++     
Sbjct: 205 QLGKGDSFVYWEEDAFIKKYLEQHSMECTLLPFSLQTSGAKALYESDKETLHIEA-QHNL 263

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 +     +G H   N + +  +        +   KAL  F     R         
Sbjct: 264 SAFSIPKRDLALVGKHNLLNAMASALVAREFGVSNEYLGKALRDFKNVPHRI---EYVAE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S   A+   +          + +LG     G    + + ++ E 
Sbjct: 321 IDGVRYINDSKATNIQSTFYALEAQTT-------PVVLILG-----GTDKGNNYSEI-ED 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           + L     +   G     L  A    I  +  + +MD      Q     GDVV++    +
Sbjct: 368 VVLSKCRALIFMGIDNDKLHRAFDGKIDQIRDARSMDECLTHAQELAQSGDVVLLSPACA 427

Query: 452 S---------NSCGFYRLINLLLEE 467
           S             F   +  + + 
Sbjct: 428 SFDLFKNYEDRGEQFKNKVLAIKDR 452


>gi|225077394|ref|ZP_03720593.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
 gi|224951278|gb|EEG32487.1| hypothetical protein NEIFLAOT_02455 [Neisseria flavescens
           NRL30031/H210]
          Length = 469

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S      
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADES-----D 166

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 167 ASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+ + L+E
Sbjct: 457 RVPSALVE 464


>gi|332518984|ref|ZP_08395451.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
 gi|332044832|gb|EGI81025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lacinutrix algicola
           5H-3-7-4]
          Length = 445

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 67/373 (17%), Positives = 109/373 (29%), Gaps = 45/373 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KATI+ ITGS GKTTT  +    LS              +IG       +  +    + E
Sbjct: 103 KATIVGITGSNGKTTTASLTHHILSQELNV-----GLAGNIGDSFAKQILEKNYKNYVLE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L          +P+IA+IT I P HL  +    E   ++K  I     K   +  
Sbjct: 158 ISSFQLD----GIIDFKPNIAIITNITPDHLDRYDYKFENYINSKFRIALNQTKEDYLIY 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + DD         +        +S  K       L                         
Sbjct: 214 DADDEVITNWLKTNTIQSTLLPFSLTKKIENGAYLENENIKI----TIDNKHIIMPTKNL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +    +  +L     T  ++L  FH  E R       L       I++S
Sbjct: 270 ALEGKHNVKNAMAASTVSHLLKIRKQTIRESLENFHGVEHRL---EQVLKINKVQYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +   +    G            G    + + +L   ++   +  + 
Sbjct: 327 KATNVNATYYALESMDAPTVWIVG------------GTDKGNDYTELFPFINE-KVKAII 373

Query: 406 LSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G     L +     + V   ET  M             GD V++    +S        
Sbjct: 374 CLGIDNEKLLENFGNMVDV-IVETQFMSEAVKIAYKIAEAGDNVLLSPACASFDLFENYE 432

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 433 DRGRQFKNAVRNL 445


>gi|6634682|emb|CAB64534.1| D-alanine--D-alanine adding enzyme [Streptococcus pneumoniae]
          Length = 69

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 5  WTFHDLLQAIQGH-SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T H++ Q +     + I     +     DSR I  ++ F  +KG   DGHDFI  A + 
Sbjct: 3  LTIHEVAQVVGAKNDVSIFEDIQLEKAEFDSRLIGTRDLFVPLKGAR-DGHDFIERAFEN 61

Query: 64 GAGLVVVN 71
          GA + + +
Sbjct: 62 GAAVTLSD 69


>gi|12007718|gb|AAG45237.1| MurD [Pseudomonas aeruginosa]
          Length = 448

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 120/363 (33%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADTVPCWSFGLNKP-DFKAFGLIEEDGQKWLAFQFGKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|332670122|ref|YP_004453130.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
 gi|332339160|gb|AEE45743.1| UDP-N-acetylmuramyl-tripeptide synthetase [Cellulomonas fimi ATCC
           484]
          Length = 526

 Score = 74.1 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 78/458 (17%), Positives = 142/458 (31%), Gaps = 44/458 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
            G+++ S  +AP + F A+ G    G  +   AV  GA  VV +       G L +PV  
Sbjct: 39  TGVTVASTDVAPGDLFVAVPGMRVHGATYAAQAVDAGAVAVVTDAAGAELAGDLGVPVLV 98

Query: 88  VDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             D       LA             + +TG+ GKTTT   +  AL +  +T A +G+   
Sbjct: 99  APDPRDLAGPLAAHVLDEPARGLVTVGVTGTNGKTTTTYFVDAALRAAHRTTAVLGTVEL 158

Query: 146 HIGVP--------------LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +G                  +  +  +   G   + +S           +   +   T 
Sbjct: 159 RVGDEAVESPRTTVEAPALQGILALARERGAGAVAMEVSSHALALGRVRGLTFDVVGFTN 218

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL     +E     KA +    E+     +  DD +   L A S           G
Sbjct: 219 LQRDHLDFHGDMEGYFRDKARL-FAPEQARRGVVVVDDEWGRRLAATSPVPVETVATHVG 277

Query: 252 KSKNADFQLRKWKQCS-----EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               AD                 ++      G          G     N  + + +    
Sbjct: 278 DPHGADADWAVVAADIGLDGVGSTFTLRGPDGTEHAAASPLPGLVNVSNAALAIVLAHTA 337

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D+ TA+ A++  H   GR +R     +     L+D ++  +       +  L  + P 
Sbjct: 338 GVDLATAVDAVAHAHEIPGRMERVVERGDGLPLCLVDYAHTPDA-----LVLALEAVRPI 392

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRS 421
             GR I V G               +   ++      + ++  +  +     ++ A+   
Sbjct: 393 TPGRLILVFGSDG----DRDQGKRPIMGQIAARLADVLVVTDENPRSEDPAVIRAAILEG 448

Query: 422 IH--------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +         VH + +         +   D D V+V  
Sbjct: 449 VRAERPSGTDVHEATSRAQAIRDALALATDQDTVIVTG 486


>gi|119469215|ref|ZP_01612199.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
 gi|119447467|gb|EAW28735.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Alteromonadales bacterium TW-7]
          Length = 483

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 84/481 (17%), Positives = 162/481 (33%), Gaps = 67/481 (13%)

Query: 9   DLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGH--DFILHAVQKGA 65
           ++L        G       +    D R I    E F         GH  + +  A     
Sbjct: 36  EVLAFEGYRITGSD---IAHSAMTD-RLIKAGAEVFI--------GHHENNVKDA----N 79

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +VV +     +   ++     +  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 80  VVVVSSAIDETNPEIIAAKAARIPVVRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSL 135

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +        I     +              DF I E   S    +      ++P 
Sbjct: 136 IASIYAQAGLDPTFIIGGLLNS---AGSNAKVGKSDFLIAEADESDASFLH-----LQPM 187

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++VIT I   H+  +   +E++     +    L   G   +  D      L  +      
Sbjct: 188 VSVITNIEEDHMDTYGGSLEKMKDTYVDFIHNLPFYGLAVVCIDSEVAAELIPRFGRP-- 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             I ++G+S  AD+++  + Q +   ++     QG+ +    +  G H A N    + + 
Sbjct: 246 --IITYGESPTADYRMSDFSQSANTCTFTVTNKQGECLTATLNMPGKHNALNATAAIAVA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     ++AL  F     R ++Y    N+    ++ + Y  +P+ + A I+ + + 
Sbjct: 304 KDQNIANQAILEALQKFEGIGRRFQQYGEFENERGNIMLVDDYGHHPSEVAATIAAVREG 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
            P        V+         ++  + D  +VL+  ++  + L            G    
Sbjct: 364 WPDK----RLVMIYQPHRYSRTRDLYEDFVKVLA--DVDQLLLLDVYGAGEEPIVGADSK 417

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV----------VVK--SSNSCGFYR 459
           +L  +L  R     +  +   L   +  +L + D+V          +VK  +S      +
Sbjct: 418 SLCRSLRQRGKEPLHVASSKELAGVLADNLQNNDLVLTQGAGNIGQLVKTLASTGMSIEK 477

Query: 460 L 460
           L
Sbjct: 478 L 478


>gi|295394734|ref|ZP_06804949.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972330|gb|EFG48190.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 491

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 58/467 (12%), Positives = 115/467 (24%), Gaps = 59/467 (12%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
             P   +  +  DSR+  P   + A  G +  G  F+   V KG    + +   V  +  
Sbjct: 15  GDPDRDITSVDNDSRTTKPGGLYAAFPGANVHGASFVTQLVDKGVRAFLTDPAGVEIMRE 74

Query: 81  -----LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
                  + +   +        +A       ++  +         TT   +  A      
Sbjct: 75  AQVDLTDLTILVHEFPRAIAGHIAAQVYGTGESPAMFGVTGTNGKTTTTFILDAFLQALG 134

Query: 136 TY----------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
                             ++    P       L     D       + +S     +    
Sbjct: 135 HTTGLIGTVATVIAGDRVDSVRTTPEASALHQLLARMRDAGVDTCSMEVSSHALSQHRVD 194

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            V   +   T ++  HL     ++E  SAKA +F     +  + +  DD   +L+     
Sbjct: 195 GVHFDVVSFTNLSQDHLDYHGTMDEYFSAKAALFTPEFASRGVVVLADDWARKLVSVSQI 254

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +   ++ S  K      Q   W+  + Q  +               +   +       L
Sbjct: 255 PVVTVSMNSEDKPDYLVVQGDSWELHTPQGRIPF-----------TPVLPGLFNVTNTAL 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L   V     A      +     R      +    +ID S+  +           
Sbjct: 304 ALAMLLEFGVQFDAVASIANGTEVVVPGRMEVVNAEHPRAIIDYSHTPDAIEKVLDRLSG 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALK 415
             +                  G    S       V +      V ++          A++
Sbjct: 364 DPVVVVVGA------------GGDRDSTKRAAMGVAAARGADVVIVTDDNPRSEDPAAIR 411

Query: 416 DAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +          R+  V   E                  +VV  K 
Sbjct: 412 AQVLAGAREAAGARAHTVEECENRGTAIRRAVELAGANGTIVVAGKG 458


>gi|121998875|ref|YP_001003662.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
 gi|121590280|gb|ABM62860.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Halorhodospira halophila SL1]
          Length = 503

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 139/462 (30%), Gaps = 49/462 (10%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL- 81
           P   + G++ D+R + P   F A+ G    G  ++  A+Q GA  VV +       G+  
Sbjct: 24  PAASIQGLTPDTRRLEPGAVFLALPGSRDHGLAYVPAALQAGAAAVVWDPQDEVDPGAAR 83

Query: 82  ------SIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTI----- 128
                  +P+ GV  +   L  +A            +IA+TG+ GKT+    +       
Sbjct: 84  TATEQSGVPMVGVPGLRRHLGAIAGRLYGDPSRGMEVIAVTGTDGKTSVSHFIAQLLSGP 143

Query: 129 -ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE--------LGMSHLGEIRFLT 179
            A   +  T       +   GV  T     +                +  S     +   
Sbjct: 144 EAPWGVVGTLGHGLVDDLRPGVLTTPDAAALQKALAECRAAGATGVAMEASSHALEQGRL 203

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
                 +AV+T +   HL     +E  A AK+ +FE       +         + L  + 
Sbjct: 204 AGTAVDLAVLTHLGRDHLDYHGSVEAYADAKSRLFEFPSLRAQVLNLD-----DALGRRL 258

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           H       +++  +  A     +      +   + + + G    V     G+    N+L 
Sbjct: 259 HDRAAGAAFTYSAAGAAADLAAEAVIPGADGVQLTLCVGGTRHSVRLPLFGHFNVANVLA 318

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +     L   +D  +  L    P  GR +++    +         +  A          
Sbjct: 319 AVAAALALGRPMDGVLARLPTLRPVPGRMEQFHADGSPLVVVDYAHTPGA-------LEQ 371

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ 412
            L+ +  H  GR   V G     G    +    L   ++      V ++  +        
Sbjct: 372 ALTALRAHTTGRLCVVFG----CGGERDTGKRPLMGEVAARLADRVLITDDNPRGEDAAV 427

Query: 413 -ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                A                     +    GDVV++  K 
Sbjct: 428 IRAAVAAGAGEGAEVVAGRGVAIGGAIAWGAPGDVVLIAGKG 469


>gi|288575843|ref|ZP_05977704.2| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
 gi|288566858|gb|EFC88418.1| UDP-N-acetylmuramate--alanine ligase [Neisseria mucosa ATCC 25996]
          Length = 469

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 144/410 (35%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHGIGY 290
             K          ++G    AD      +    Q    V +Q K       EVV +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGSEQAPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   + L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGEIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDVVL 448


>gi|145588350|ref|YP_001154947.1| UDP-N-acetylmuramyl-tripeptide synthetase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046756|gb|ABP33383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 516

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 82/489 (16%), Positives = 151/489 (30%), Gaps = 61/489 (12%)

Query: 19  IGIVPQGFVNGISI----------DSRSIAPQEAFFAIK---GPH-YDGHDFILHAVQKG 64
           + I P   ++ +            DSR I   + FFA     G    DG  FI  A+  G
Sbjct: 5   LNIEPNDLIDHLHTLANSSAKVGADSRQIQSGDIFFAYPVGHGAALRDGRQFIEAALANG 64

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  VV +   +          F V+ +   + +              +I +TG+ GKT+ 
Sbjct: 65  AAAVVFDPAGIDPQFQDHPQCFAVESLAEKVGEFCAQWYDYPSKQLKVIGVTGTNGKTSI 124

Query: 123 KEMLTIALSSIKKTYAC------------IGSYNNHIGVPLTLARMPV--DVDFGIFELG 168
            + L  AL       A             + +       P    ++    D       + 
Sbjct: 125 TQWLAQALDEPNHRTAVLGTLGTGFPTALVMTGYTTPDAPKLQTQLRELLDGGAQQVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +        + AV T +   HL     + + A AKA++F+         +N D
Sbjct: 185 VSSHALHQERIAGTWFNCAVFTNLTQDHLDYHGSMGDYAEAKAKLFQ-QAGLEHAVINLD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------------SWMEVQ 275
           D F   L     A     ++++G +  A     K+    ++                 V 
Sbjct: 244 DPFGRELAINLLAKDSIQVWAYGLAPTAFKGFEKFASRLQRIYTQDTVLSGATYQTTFVY 303

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    +G     N L    ++       + A K +S   P  GR +      N
Sbjct: 304 GDKGTYPLHIPLLGEFNLSNALAVWTVLLTQGLSPEEATKRVSHLSPVSGRMELIPLGKN 363

Query: 336 QGFF-TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           Q     L    Y   P +++  +  L  ++    G+   V G     G            
Sbjct: 364 QKSEGLLAVVDYAHTPDALQKTLQALRPLAEQRGGKLWCVFG----CGGDRDITKRPQMG 419

Query: 395 VLSLYNISHVWLSGFHVLA---------LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
           +++     H+ ++  +  +         + D L P + +V          +         
Sbjct: 420 LVAEKFADHIIITSDNSRSEDPQAIIQMIADGLNPSTTNVQMIADRAAAIMAAVRHADAR 479

Query: 445 DVVVV--KS 451
           D+V+V  K 
Sbjct: 480 DIVLVAGKG 488


>gi|254564002|ref|YP_003071097.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
 gi|254271280|emb|CAX27292.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Methylobacterium extorquens DM4]
          Length = 492

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 76/452 (16%), Positives = 129/452 (28%), Gaps = 40/452 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V G++ DSR + P   F A+ G   DG  F        A                 +P 
Sbjct: 26  PVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAA-----AAAAGAVAVAGEGTRPADLPE 80

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G
Sbjct: 81  ATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIA 187
           +             +       + E              +  S  G  +     V    A
Sbjct: 141 TVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTAA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     IE+   AK  +F  L   G   +   D  +              I
Sbjct: 201 AFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAI 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G+  +    +    +   QS            V    +G    +N L+  G+     
Sbjct: 261 RTTGRGGDFIRLIEAGTEGFAQSLTLSHASKDYH-VRLPLVGGFQVENALVAAGLALATQ 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         +      G   R            + + Y   P +++  +S    + P  
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD-YAHKPEALEHVLSA---LRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            GR + V G     G    +    +   ++      V ++  +             L  +
Sbjct: 376 SGRLVVVFG----CGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAGVRDLRAGDVLVVAGKG 463


>gi|241896418|ref|ZP_04783714.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
 gi|241870398|gb|EER74149.1| UDP-N-acetylmuramyl tripeptide synthase [Weissella
           paramesenteroides ATCC 33313]
          Length = 518

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 73/471 (15%), Positives = 142/471 (30%), Gaps = 60/471 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
            G +  ++ +S  + P    F IKG ++   +++  A++KG   ++      +   +  +
Sbjct: 35  DGEIQHLAYNSNDVVPGTLLF-IKG-NFKA-EYLTDAIEKGVTAIIA---PASFKHATKL 88

Query: 84  PVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTY---- 137
           P +  DDV  A++ +A+A     ++   +I ITG+ GKT+T  M    L +         
Sbjct: 89  PTWVADDVPAAMSIIAMAFYQYPQNNLALIGITGTKGKTSTAYMAYEILRAYTHDKVALS 148

Query: 138 ---------ACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                         Y  H+  P         R  VD       + +S         + + 
Sbjct: 149 STLQVITGSEPQYHYRAHLTTPESVDLFRWMREAVDNGMTHMVMEVSSQAFKMRRVYGLH 208

Query: 184 PHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            ++ +   I+P H+        E+    K  +F+  E+      +               
Sbjct: 209 FNVGIFLNISPDHIGENEHPTFEDYLQHKMMLFDHSEQIVLNVDSDHFGELIAHAELMVH 268

Query: 242 LGIKTIYSFGK---------SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                +Y              +  D  L        +   + +      E      G   
Sbjct: 269 RDGIWLYGQEDVDSPKADVYFEATDANLHGSVFKVREVGQQAEHLHIKGEYTLDMPGDFN 328

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  +    ++ AD     + L             +    Q   T+  + Y  N AS
Sbjct: 329 QSNALAAMIATRLVGADAPAMAEGLETVKVPGR----MQVLNTQKHGTIYVD-YAHNYAS 383

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG---- 408
           + A +  + Q       +   V+G     G                     V+L+     
Sbjct: 384 IAALLQFVRQ--NESVNQLAIVVGAPGNKGVSR----RPGIGKAVSEGADVVYLTSDDPQ 437

Query: 409 -FHVLALKDALPRSI---HVHYSETMD--GLFLFIQSSLVDGDVVVV--KS 451
                 + D +  +I    V     +D     +    +    DVVV+  K 
Sbjct: 438 YEDPAKIADEIQAAITNPKVTIYRELDRTKAIIAAILAAGPDDVVVLAAKG 488


>gi|315928276|gb|EFV07592.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 431

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V    A +  D  
Sbjct: 106 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQ 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E         
Sbjct: 166 IYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEK 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 226 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKVDIENKSY 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 269 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 324

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 325 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 377

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 378 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 423


>gi|333029403|ref|ZP_08457464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
 gi|332740000|gb|EGJ70482.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           coprosuis DSM 18011]
          Length = 441

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 117/386 (30%), Gaps = 41/386 (10%)

Query: 70  VNTDMVASIGSLSIPVFG-VDD---VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            N  + +     + P+   V D    + +  + A      S A +I ITGS GKTTT  +
Sbjct: 64  ANEIIKSPGIPDTAPIIQQVKDKDIPVISEIEFAGRY---SNAKMICITGSNGKTTTTSL 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L        K          +IG  L       + +F I EL    L       +  +  
Sbjct: 121 LYHMFHKAGKNV----GLAGNIGKSLARQVAEENHEFYIIELSSFQLD----NMYNFKAD 172

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           IA++  I P HL  +   +++   AK  I +            DD   +           
Sbjct: 173 IAILLNITPDHLDRYDNCMDKYIDAKFRIIQNQTDKDHFIYWSDDPILKEQINHRTIHAT 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K  +S         +   +        +         +      G H   N +  +    
Sbjct: 233 KNPFSV--------EHSDFTYKLGNKIILDGGNLSIDKEFVKLSGVHNLYNTMAAITAAY 284

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +         + L+ F+  E R               I++S   N  S   A+  +    
Sbjct: 285 LSKLSPMEIEQGLNSFNGVEHRL---EYVDTIHGVRFINDSKATNVDSCWYALQAMH--- 338

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIH 423
                  I +LG     G+   + +  +  ++     + +   G +   L       +I 
Sbjct: 339 ----NSTILILG-----GKDKGNDYNKITPLIKE-KCTGLVFLGANNTKLHQFFDGFNIP 388

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  M    +  +     GD V++
Sbjct: 389 IEDTNNMTDAVVKAKGLAKSGDTVLL 414


>gi|91216028|ref|ZP_01252997.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
 gi|91186005|gb|EAS72379.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Psychroflexus torquis ATCC 700755]
          Length = 447

 Score = 74.1 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 113/384 (29%), Gaps = 44/384 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + A II ITGS GKTT   M+   L +   +     S   ++G        
Sbjct: 94  EFASWF---TGANIIGITGSNGKTTVTNMVYHILKNAGLSV----SMAGNVGFSFAEQVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFE 215
                  + EL    L  +       RPHIA++T+I P HL       +E   AK +I +
Sbjct: 147 RQSFHNYVLELSSFQLDGVE----DFRPHIAILTSITPDHLDRYHDNFQEYIQAKFKITK 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K   +  N DD        K+        ++          +       E + + ++
Sbjct: 203 NQTKDDFLIYNKDDKVIVNWLEKNTVKAQLIPFT------NTTIMTDLSAFIENNKINIK 256

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L      +  + +      N    +   +                   +G   R      
Sbjct: 257 LNHNLFTMSVNDLSVKGDHNTRNAMAASTAARLLKIRKQTIRESMESFQGVEHRLEQLGK 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  ++  +    G            G    + + DL  +
Sbjct: 317 INKVAFINDSKATNINATFYALDSMTAPTVWIVG------------GVDKGNVYEDLLPL 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KS 451
           ++   +  +   G     + ++    +     S  M            D D V++    +
Sbjct: 365 VNE-KVKAIVCLGIDNQKIYNSFSNCVDTIIESSNMTDAVAKAYGLTEDNDAVLLSPACA 423

Query: 452 S---------NSCGFYRLINLLLE 466
           S             F   I  L +
Sbjct: 424 SFDLFENYEDRGRQFKEAIQYLKK 447


>gi|157736998|ref|YP_001489681.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698852|gb|ABV67012.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 478

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 120/344 (34%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIF 165
              I+ IT S GKT+ K  L   L +  K Y    S N   G V      +P D    I 
Sbjct: 156 DLKIVEITASFGKTSIKNYLYHILKNKYKVYKTPRSVNTIAGIVLDVNKDLPADTQIYIA 215

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P I VI ++   H+  F  +E I + K EI +          
Sbjct: 216 EAGARVKGDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILKSPNMKMGFVH 275

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       K                     L   K   +  W +V++ G       
Sbjct: 276 ESVPISNSQNITKFPNS-----------------LHIVKSNLDGIWFDVEVGGNIEHFYA 318

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + +   L  D+     AL+     E R ++           ++D+S
Sbjct: 319 PILGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIEANGK----IIVDDS 374

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A++    I    EGR++ +   + E  + +      LA+ +   N  +V 
Sbjct: 375 FNGNLEGMLEAVN----ICSSYEGRKVIITPGLVESTDEANIL---LAKAIDE-NFDYVI 426

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L+G     L  A      V+  +    +   +      GD+++ 
Sbjct: 427 LTGSLNTQLLKANINENKVYILKDKSKMQEVLAELTRTGDLILF 470


>gi|188585928|ref|YP_001917473.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226722938|sp|B2A2H0|MURD_NATTJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|179350615|gb|ACB84885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 461

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 133/409 (32%), Gaps = 47/409 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + +++     L +PV    D L    ++      + +  +IA+TG+ GKTTT  ++    
Sbjct: 82  DNNIITKAKELGMPVI---DELELGYQILNYRLTKPEERLIAVTGTNGKTTTTNLIGEFF 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +   +         ++G+PL+       D DF + E+    L          RP +++I
Sbjct: 139 EASGYSIY----VAGNVGLPLSQIACEVTDTDFIVLEVSSFQL----EFIKGFRPKVSMI 190

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL     ++    AK  IF+         +N DD     L  +S          
Sbjct: 191 LNITPDHLDWHGDLDSYIRAKMNIFKNQTSKDFSVVNVDDETTFGLNRESKGRK------ 244

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              + + +    +     +   +   L  K+  +  H I      N+   L   +     
Sbjct: 245 --LNFSKNSLRTEGSFIEDDHLVINYLDTKTSIIHKHDILLPGEHNLENVLAATTATLPF 302

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             +     +      G   R            I++S   N  +   AI+    +      
Sbjct: 303 SISEENIRNTLKAFSGVDHRLELVRELNGVKFINDSKGTNVEASLKAINSFDSM------ 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYS 427
             I + G     G+   +   + AE +    +  V+L G     +  AL +      +  
Sbjct: 357 --ILIAG-----GKDKGADFSEFAEAIKEKGVKKVYLFGETYKKIASALDKVYYPEYYIV 409

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             ++          + GDVV++    +S             F  ++  L
Sbjct: 410 NNLETAVTGAYQDAISGDVVLLSPACASWDMYDSFEKRGNHFKSIVYSL 458


>gi|227486694|ref|ZP_03917010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227235282|gb|EEI85297.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 449

 Score = 73.7 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 126/408 (30%), Gaps = 43/408 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
                  +  I      D    ++ + V+ RL      IAITG+ GKT+T  M+   L+ 
Sbjct: 70  KSPGIKPTDDIVQILEKD-NEIISDIEVSQRLFPDREKIAITGTNGKTSTTSMVAHILNE 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             K    +G+          L +M       + EL    L +        +PHI  I  I
Sbjct: 129 CGKPAYAVGNIGE-----GVLWQMYEKKGVFVEELSSFQLHDT----QAYKPHIGAILNI 179

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+      ++  ++K ++    ++   +      +  + +  K        IY F  
Sbjct: 180 KEDHIDWHGSFDDYINSKLKLAANQDQGDYLV----INHEDEISQKHIKDFKAQIYEFSS 235

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               D  L               ++          IG H  +N++  + +  +   ++  
Sbjct: 236 QNIVDRGLFLEGNKICLRNGGCVIEEILDVRDLSVIGRHNYENVMAAILLTYLYGLNLSE 295

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            IKA+  F     R +  R           ++S   N  S   AI    +      G   
Sbjct: 296 IIKAIKTFKSIAHRLEYVRTLSGID---FYNDSKGTNVDSSVKAIESFDRPILIIAG--- 349

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMD 431
                    G      + D  +         + + G     LK    +  I     + M+
Sbjct: 350 ---------GYDKHIDYTDFVKAFRKNG-KLMVIMGATKEKLKALCEKYDIKYILVKDMN 399

Query: 432 GLFLFIQSSLVDGDVVVVK-SS-----------NSCGFYRLINLLLEE 467
                  S   +GDVV++  +S               F  L+N L E+
Sbjct: 400 EAINTAYSKGENGDVVLLSPASASWDMYKSFEVRGDEFKDLVNRLEEK 447


>gi|153951182|ref|YP_001398284.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938628|gb|ABS43369.1| Mur ligase family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 475

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 31/346 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFG 163
                II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D    
Sbjct: 152 NENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDAQIY 211

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E           
Sbjct: 212 IAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEKAF 271

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +      + L +           S                  E     V ++ KS + 
Sbjct: 272 LHSSTQKKEDKLISLYDDKLNLIHSSL-----------------EGLEFRVNMESKSYDF 314

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   AQN+ + +         ++   K +   +  E R +     L++    +ID
Sbjct: 315 KSQILGDFNAQNLCVCILCAHYFDIKLEKIQKQVLNINSVEHRLQ----VLSREPKFIID 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   M  +  +      + +GR++ V   + E+   S+  +I LA++++      
Sbjct: 371 DGFNGNFKGMSTSYELCK----NYKGRKVLVSPGIVEV---SEEENIKLAKIINECFDLA 423

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 424 IISAQINAEIFKRELK--IPTIILKEKSELIQTLAKETKNGDLILF 467


>gi|86153443|ref|ZP_01071647.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843169|gb|EAQ60380.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 475

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 127/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V    A +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +  +        S                  E    +V ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLISLYNDKLSLIHSSL-----------------EGLEFKVDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|284991689|ref|YP_003410243.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
 gi|284064934|gb|ADB75872.1| UDP-N-acetylmuramyl-tripeptide synthetase [Geodermatophilus
           obscurus DSM 43160]
          Length = 523

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 78/476 (16%), Positives = 148/476 (31%), Gaps = 56/476 (11%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +       V G+++ S  + P + + A+ G    G  +   A  +GA  V+ +    
Sbjct: 28  GAPVQGDAGTAVTGVTLASGEVGPGDLYAALPGARTHGARYAADAAARGAAAVLTDPTGR 87

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSI 133
               +  +PV  VDD  G L  +A         +  +I ITG+ GKTTT  ++   L++ 
Sbjct: 88  EEAAATGLPVCVVDDPRGLLGAVAARVYGEPARRLQVIGITGTNGKTTTSYLVEAGLAAA 147

Query: 134 KKTYACIGSYNNH------IGVPLTL-------------------ARMPVDVDFGIFELG 168
            +    +G+           G P                            V   + E+ 
Sbjct: 148 GRGTGLVGTVETRTRGRAADGTPTVTTLPSVRTTPEAPALHALLARMADSGVQTVVMEV- 206

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            SH   +  +  +     A  T +   HL   + IE+   AKA +F+G        ++ D
Sbjct: 207 SSHALVLGRVGGIP-FAAAGFTNLGRDHLDFHTDIEDYFLAKARLFDGRA--AVEVVDVD 263

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +   L          T+ + G   +              ++      G+S        
Sbjct: 264 DPYGRRLAGMLGDRRAVTVSTQGADADWTATGLGPAPGGGTAFTLSGPGGRSWPARVRLP 323

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     N ++ + ++  +   V+TA+  L+                    F  + +  + 
Sbjct: 324 GAFNVANAVLAVALLDAVGVPVETALTGLAETVVPGR----MEPVDAGQPFVAVVDYAHT 379

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A      + L+ +     GR + VLG     G              +      + ++ 
Sbjct: 380 PDA----VATALAALRAATPGRVLTVLG----CGGDRDPGKRAAMGEAAARGSDLLVVTD 431

Query: 409 -----FHVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                    A++ A+   +       V              +    GD V+V  K 
Sbjct: 432 DNPRSEDPAAIRAAMLAGVPADRRGDVVEVGDRRAAIAEAVARARPGDAVLVAGKG 487


>gi|325286923|ref|YP_004262713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
 gi|324322377|gb|ADY29842.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellulophaga
           lytica DSM 7489]
          Length = 444

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 125/406 (30%), Gaps = 52/406 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +V  + + +IPV        +  + A      + ATII ITGS GKTTT  M+   L  
Sbjct: 77  ALVQKLAAKNIPVI-------SEIEFASKY---TDATIIGITGSNGKTTTTMMVNHILKE 126

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        +IG          + D+ + E+    L          +PHIA+IT I
Sbjct: 127 EGLHVGM----AGNIGDSYAKMVSENNFDYYVLEISSFQLD----GIVDFKPHIAIITNI 178

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  ++   +   ++K  I E   +   +  + DD        K         +S  
Sbjct: 179 TPDHLDRYNYEFDNYITSKFRIAENQTEDDYLIYDADDEVLVSWLEKHPVKSKLIPFSLT 238

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           K       L+  K            Q  ++E+    +      N+  T+   +       
Sbjct: 239 KQFKEGVCLKNNKIHI-------TTQNNTIEMATDNLALEGKHNLKNTMAASAASKLVNI 291

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
                 +     +G   R    L       +++S   N  +   A+  +   +    G  
Sbjct: 292 RKATIRASIENFQGAAHRLESVLKIAHVHYVNDSKATNVNATYYALESMKSATVWIVG-- 349

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETM 430
                     G    + +  L  ++    +  +   G     + +     + +   +++M
Sbjct: 350 ----------GVDKGNDYKSLMPLVRE-KVKAIICLGVDNSKIIEEFGNVVDLLVETKSM 398

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +            GD V++    +S             F   +  L
Sbjct: 399 NEAVKMAYKIGQRGDTVLLSPACASFDLFENYEDRGNQFKAAVKSL 444


>gi|254491357|ref|ZP_05104537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxidans DMS010]
 gi|224463486|gb|EEF79755.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophaga
           thiooxydans DMS010]
          Length = 413

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 82/407 (20%), Positives = 142/407 (34%), Gaps = 51/407 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+  +     +    +  V D+     +L         A I+AITGS GK+T   +L + 
Sbjct: 44  VDPRLPEIKAAKDAGIEIVGDI-----ELFSRYAE---APIVAITGSNGKSTVTTLLALM 95

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                KT         ++G P          DF I EL    L         +    AV+
Sbjct: 96  AQLSGKTV----KAGGNLGTPALDLLEGETPDFYILELSSFQL----ETVRSLNAFAAVV 147

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++P H+  +  + +   AK +IF G        LN +D F + ++ +      +    
Sbjct: 148 LNVSPDHMDRYDSVSDYQQAKQKIFNGDGVM---VLNTEDPFVQEMRIE-----GRNHIG 199

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  K+ +       Q     W+               +G H   N L  L + S +   
Sbjct: 200 FGLHKS-EGVDFGLLQYDGAVWLAEGESPLLAIDAMKIVGKHNLANALAALALGSAMALP 258

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   + AL  F+    R +  R           ++S   N  +  AAI+ L+      +G
Sbjct: 259 MPAMLSALQAFNGLPHRCRLVRVLNEV---RWFNDSKATNVGACIAAINGLAD-----DG 310

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             + + G + +  + S     +L E L    +  V L G     +  A+P  +   ++  
Sbjct: 311 AIVLIAGGVGKGQDFS-----ELTESL-EKAVRAVVLLGEDADKIATAIPPQVEQIHATD 364

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           M    L  QS    GD V++    +S             F +L+  L
Sbjct: 365 MQDAVLKAQSLAQPGDNVLLSPACASFDMFTGYAERGDKFEQLVRGL 411


>gi|291459276|ref|ZP_06598666.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418530|gb|EFE92249.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 452

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 64/361 (17%), Positives = 122/361 (33%), Gaps = 36/361 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+  + AITG+ GKTTT  ++   L S       +     +IG P T   +  +   
Sbjct: 102 YQSSRGKLAAITGTNGKTTTVSLVGEILRSHFSDTHVV----GNIGNPFTAEALETEDSS 157

Query: 163 G-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L          RP ++ IT I P HL     ++     K  I     +  
Sbjct: 158 ATVIEVSSFQL----ETIMDFRPDVSAITNITPDHLDRHKSMKNYIRIKESIAMNQTEED 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++D                  +S  +     F LRK      ++  E +   K  
Sbjct: 214 CVVLNHEDPELRSFGKGKELKPKVLWFSSERELKEGFFLRKDALFFREAGKEAEELLKVR 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+   G   H  +N++  + +   +   +   I     F P E R         +   + 
Sbjct: 274 ELKLLG--KHNYENVMCAMAVSYRMGVPMRKIISVCKSFRPVEHRI---EFVRKRSGVSY 328

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
            ++S   N  +   A+  +        G  I + G            H+D  + +  +  
Sbjct: 329 YNDSKGTNVDAAIQALRAM-------PGPVILIGGG--------YDKHVDFDDWVKEFKG 373

Query: 401 -ISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNS 454
            + ++ L G     + +   +    ++ ++E MD       +    GD V++    +S  
Sbjct: 374 RVKYLVLIGQTRSQIANCAKKYGFKNIMFAEDMDEAVRDCAAYADSGDFVLLSPACASWG 433

Query: 455 C 455
            
Sbjct: 434 M 434


>gi|149917684|ref|ZP_01906180.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
 gi|149821466|gb|EDM80866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Plesiocystis pacifica SIR-1]
          Length = 483

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 113/424 (26%), Gaps = 44/424 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
             A+ +GA  V+ +   +A+       +  V  +   ++ LA +          ++A+TG
Sbjct: 45  EDALAQGAAAVLTDDRELAASDP---RIVFVPALADEVSGLAASFYGHPGRALKVVAVTG 101

Query: 116 SVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL------- 167
           + GKT+T          +              +G                 EL       
Sbjct: 102 TCGKTSTTFFTAQLADRVGLGAAVMGTLGMGRLGDLRDSGHTTPQHAMLQRELARYVDEG 161

Query: 168 ------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
                   S  G        V     V T +   HL     +E  A+AK  +F+      
Sbjct: 162 LGLVAIEASSAGLEMDRLGGVPIDAGVFTMLGRDHLDRHRTMEAYAAAKWRLFDAYAPEF 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD---FQLRKWKQCSEQSWMEVQLQG 278
            +    DD   E    +       T++        D     +   +Q      + +    
Sbjct: 222 AVLG-ADDPTGEAWARRLRERCAVTVFGAEPRPELDLPRVHIEGLEQQRAGLGVRLASTW 280

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V    +G   A N+   L  ++ L       + A        GR + Y        
Sbjct: 281 GEAAVSIRALGAFQAHNLAAALATLARLGVPWPELVVACEGLSGPPGRMEPYAAPGTPLC 340

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                  Y   P S+  A+     ++P   GR   V G     G    S         + 
Sbjct: 341 LID----YAHTPESLTFALDSARALAP--GGRVWCVFG----CGGGRDSGKRGEMGAAAE 390

Query: 399 YNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   V ++  +           A+   +                          DVVVV
Sbjct: 391 GSADVVVVTTDNPRHEDPEAIAAAVVAGMETPSRARVIGERGQAITRALDEAAPEDVVVV 450

Query: 450 --KS 451
             K 
Sbjct: 451 AGKG 454


>gi|152992426|ref|YP_001358147.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
 gi|151424287|dbj|BAF71790.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase [Sulfurovum
           sp. NBC37-1]
          Length = 485

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 62/344 (18%), Positives = 121/344 (35%), Gaps = 19/344 (5%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
             T++ IT S GKT+ K  +   L +  +TYA   S N   GV       +P D +  + 
Sbjct: 152 DLTVVGITASYGKTSIKNYIEHLLKAKYRTYATPRSVNTLGGVMKDINDDLPEDTEVYVV 211

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G    G+I  +T  V P   V+  I PAH+  F  +E I + K EI +          
Sbjct: 212 EMGARGEGDIAEITTFVNPQYVVVGKIGPAHIEYFKTMENIRNTKMEILQSHRLKEAWIH 271

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E             + +   +           +  E +          +    
Sbjct: 272 ESAMVKPEKNIHIFGTGENLDMKTGLPAPEY------LIKDIEATLDATSFTLDGVRYSA 325

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + +   L    +   + LS     + R +R           ++D+S
Sbjct: 326 SILGAFNAMNLAAAVLVAKKLGLSDEEIQQGLSTLKAVDHRLQRIDAGGK----VILDDS 381

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M A+  + S  +    GR++ +   + E+       ++ +A+  +      V 
Sbjct: 382 FNGNIDGMMASFDLASTYA----GRKVVITPGLVEV---DDELNMQVAKRANEV-FDLVV 433

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G    A+         +    +   +   +    + GD+++ 
Sbjct: 434 VTGDLNYAIFKEHVDPEKLVKLASKSEMESMLVEQTLPGDLILF 477


>gi|86150175|ref|ZP_01068402.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597486|ref|ZP_01100720.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562423|ref|YP_002344202.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|85839291|gb|EAQ56553.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190078|gb|EAQ94053.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360129|emb|CAL34923.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926041|gb|ADC28393.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315930806|gb|EFV09802.1| mur ligase middle domain protein [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 475

 Score = 73.7 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V    A +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKVDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|326797502|ref|YP_004315321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
 gi|326548266|gb|ADZ76651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingobacterium
           sp. 21]
          Length = 457

 Score = 73.7 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 107/382 (28%), Gaps = 43/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + A  + ITGS GK+TT  +    L               +IG    L   
Sbjct: 105 EFAARY---TDAKTVCITGSNGKSTTTMLTYHILQKAGINV----GLAGNIGKSFALQVA 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               +  + E+    L       +  R  IAV+  I P HL  +   +E   ++K  I  
Sbjct: 158 TEQYEVYVLEISSFMLD----DMYDFRADIAVLLNITPDHLDRYDYKMENYVNSKFRITR 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +        DD                  +S  +       L + K+       + +
Sbjct: 214 NQRENDIFIYCKDDPETNKALTAKEINATMYPFSLTEEVQYGAYLNEEKEIVITLPNQER 273

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 ++   G            +  V  L  +         V  P      R      
Sbjct: 274 FIMSINDLALQGKHNVYNNMASGIVAKVWELRNESIRESMGDFVNIP-----HRLEHVTK 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S+  A+  L        G+ + ++G + +  + S      +   
Sbjct: 329 ISGIEFINDSKATNVNSVWYALESL-------PGKIVLIMGGVDKGNDYS------MLRE 375

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KS 451
           L    +  +   G     + +A      V   ++TM             GD V++    +
Sbjct: 376 LVQSKVRGIVCLGKDNRNIHNAFEADTDVIVNTQTMSEAVQIAYHIAQKGDTVLLSPACA 435

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +  L
Sbjct: 436 SFDLFKNYEDRGDQFKAAVREL 457


>gi|166031191|ref|ZP_02234020.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
 gi|166029038|gb|EDR47795.1| hypothetical protein DORFOR_00877 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 92/323 (28%), Gaps = 40/323 (12%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +    + E+    L          RP+++ I    P HL+    +E   +AK  I  
Sbjct: 160 LMTEHSIAVAEMSSFQL----ESIVAFRPNVSAILNYTPDHLNRHHTMEAYIAAKENIAR 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +     LNY++                  +S          L   K   +       
Sbjct: 216 NQTEDDYCVLNYEEPVMRKFAE--TLKCHVLFFSSQHKLEKGIYLDNDKIIYKNPDEVEV 273

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +G H  +N++  + + ++    ++T  KA+  F     R         
Sbjct: 274 C----HVDELQILGTHNYENVMAAVCMAAVYGVPMETIRKAILAFKGVAHRI---EYVAE 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +      ++S   NP +   AI  +         R   +LG     G    S + +    
Sbjct: 327 KNGVVYYNDSKGTNPDAAIKAIQAM--------RRPTILLGG----GYDKDSEYTEWINS 374

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
                +  + L G     +     +       Y +T +            GD V++    
Sbjct: 375 FD-GKVKKLILMGATKEKIARDCEKCDFHDYVYVDTFEEAMNLAVEMAEPGDAVLLSPAC 433

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F  ++N L
Sbjct: 434 ASWGMFPNYEVRGDKFKEIVNSL 456


>gi|313106944|ref|ZP_07793147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
 gi|310879649|gb|EFQ38243.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           aeruginosa 39016]
          Length = 448

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADTVPCWSFGLNKP-DFKAFGLIEEDGQKWLAFQFDKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +        D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAAGLPFDAMLGALKAFSGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|229220794|ref|YP_208580.3| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|229597261|ref|YP_002002446.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|260439879|ref|ZP_05793695.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|109892712|sp|Q5F6L9|MURC_NEIG1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 468

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 63  NGADVVVASTAVKKENPEVVAALERQIPVI----PRALM--LAELMRFRDG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 114 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 171 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCVDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 226 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 342 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 397

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 398 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLNMGAGSI--N 455

Query: 459 RLINLLLE 466
           R+ + LLE
Sbjct: 456 RVPSALLE 463


>gi|146299568|ref|YP_001194159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
 gi|146153986|gb|ABQ04840.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacterium
           johnsoniae UW101]
          Length = 443

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 65/368 (17%), Positives = 115/368 (31%), Gaps = 42/368 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITGS GKTTT  +    L S             +IG            D  + EL   
Sbjct: 104 IGITGSNGKTTTTMLTHHLLKSAGLNV----GLGGNIGKSFAWQVAENKYDAYVLELSSF 159

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
            L          RP IA+IT I+P HL  +    E   ++K  I     ++  +  + DD
Sbjct: 160 QLD----GIIDYRPDIAIITNISPDHLDRYEYKYENYINSKFRITMNQTESDYLIYDADD 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                    +        +S  K+ +    +   K   +      Q +           G
Sbjct: 216 EASTEWLKNNKTKAKLIPFSLTKTFDEGASINNNKMEIK----INQEEFTMETEHIALEG 271

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N +    +  ++     T  ++LS F   E R       L       I++S   N
Sbjct: 272 KHNMKNAMAASSVAKLMQIRNATIRESLSNFQGVEHRL---EKVLKIQNVQYINDSKATN 328

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +   A+  ++  +    G            G    + + +L  ++    +  +   G 
Sbjct: 329 VNATFFALDSMNVPTVWIVG------------GVDKGNDYNELMSLVRE-KVKAIICLGI 375

Query: 410 HVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
               + DA    + +      M+      Q     GD V++    +S             
Sbjct: 376 DNRKIIDAFGAVVDIMVEVNNMNDAVKTAQRLTEKGDAVLLSPACASFDLFENYEDRGKQ 435

Query: 457 FYRLINLL 464
           F + ++ L
Sbjct: 436 FKQAVHNL 443


>gi|296166027|ref|ZP_06848477.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898617|gb|EFG78173.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 70

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVP----QGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
          M  L T   +   + G    I P    +  V G +  DSR++ P   F A+ G   DGHD
Sbjct: 1  MIDL-TVAQIADIVGGTLADISPQEAAELRVTGSVEFDSRAVGPGGLFLALPGARADGHD 59

Query: 56 F 56
          +
Sbjct: 60 Y 60


>gi|329116440|ref|ZP_08245157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
 gi|326906845|gb|EGE53759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parauberis NCFD 2020]
          Length = 452

 Score = 73.4 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 121/346 (34%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGI 164
           S+A I AITGS GKTTT  M+   L+   ++       + +IG P +   +   + D  I
Sbjct: 110 SEAPIFAITGSNGKTTTTTMIADVLNHAGQS----ALLSGNIGFPASEVAVDAKENDRLI 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       RPHIAVIT + P H+      EE  +AK  I   +     + 
Sbjct: 166 MELSSFQLMGVD----QFRPHIAVITNLMPTHIDYHGSFEEYVNAKWNIQNNMSDKDFLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D      L  K        +Y   + +         K   E        +       
Sbjct: 222 LNGDQEISYDLANK---TKATILYFSSQKEVDGAYCLDGKLYFEG-------EYIMDADQ 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D D+  + L+ F   + R    +           ++
Sbjct: 272 IGVPGLHNVENALATIAVAKLANVDNDSIKETLASFGGVKHRL---QYVGQVNQIKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  + + A+S             + ++    + G        D+        +  +
Sbjct: 329 SKSTNILACQKALSSFD-------NSNLILIAGGLDRGNEFDDLVPDII------GLKKL 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            L G     +K A  ++   +  ++ +             GDVV++
Sbjct: 376 ILLGQSADKMKKAAEKAGVSYLDAKDVAEATAIAFKEAKQGDVVLL 421


>gi|206900214|ref|YP_002250973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
 gi|206739317|gb|ACI18375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dictyoglomus
           thermophilum H-6-12]
          Length = 456

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 123/384 (32%), Gaps = 44/384 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      S+  IIA+TG+ GK+TT  ++   L +             +IG+P      
Sbjct: 102 ELAYWY---SEVPIIAVTGTKGKSTTTTLIGEVLKNANI----PNIVAGNIGLPFVSVVK 154

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +   + + E+    L +I       RP I++   I P HL  +S ++E   AKA IF  
Sbjct: 155 NLKEGYFVLEISSFQLEDIEEF----RPFISLFINIYPDHLDRYSNMDEYILAKARIFMN 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +K     LN+D      L        +   ++  + +   ++  K K     S     L
Sbjct: 211 QKKEDYAILNHDQEEIVKLAKHYEVRKLFFGFNKHEEEGLFYEEDKNKIFYNLSDRRGFL 270

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +   M       L  + +   +                     +     
Sbjct: 271 NIPKGIWNRILVNNFM----ASALVGLLLGVREEVIEKTGEEFQGIPFAL----QKIGEI 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   NP S  +AI  +           + +LG     G        +L E +
Sbjct: 323 NGRIFVNDSKATNPISTISAIKSI-------NSPILLILG-----GRNKNFDFQELFENI 370

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
               +  + L G     +K+      I    S++++            GDV+++    +S
Sbjct: 371 KKTTVKALILIGETKEVMKNLSEEYDIPYVLSDSLESAVKKAYEMSQPGDVILLSPACAS 430

Query: 453 ---------NSCGFYRLINLLLEE 467
                        F  +   L  E
Sbjct: 431 FDMFRNYKERGKVFNEVFERLKHE 454


>gi|325280027|ref|YP_004252569.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
 gi|324311836|gb|ADY32389.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Odoribacter
           splanchnicus DSM 20712]
          Length = 449

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 101/347 (29%), Gaps = 22/347 (6%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             ++A ++ ITGS GKTTT  +    L++             ++G  L            
Sbjct: 97  RHTEAKMVCITGSNGKTTTTLLTCHILTTAGID----AGLAGNVGRSLAAQVAEDAHPLY 152

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGT 222
           + EL    L          R  IAV+T I P HL  +    E    +K  I   +     
Sbjct: 153 VVELSSFQLD----GMFDFRADIAVLTNITPDHLDRYDHKFENYIDSKFRILNNMRPQDL 208

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                D         +   +     + +      +    +     E   + VQL+ +   
Sbjct: 209 FIYGLDSEAVGHRLRQVRVVPRMAGFIYADRSIWEKNTCRSGAWMEGEEVVVQLENRQFR 268

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    I      N+   +  +        +  K             R          T I
Sbjct: 269 IAKQEISIQGRHNVYNAMAAILACMQVGVSDEKIAEGLRTFPQVEHRLETVRVVEGVTYI 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S   A+  ++       G            G    + +  L +++    + 
Sbjct: 329 NDSKATNVDSAWYALDSMTTPVIWIAG------------GTDKGNDYSVLFDLVRQ-KVK 375

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L D       V  + ++       +   V+GD V++
Sbjct: 376 VLICMGVDNRKLIDNFSGICQVVDTHSLKDALAAARQYAVEGDTVLL 422


>gi|108800226|ref|YP_640423.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. MCS]
 gi|119869354|ref|YP_939306.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. KMS]
 gi|126435849|ref|YP_001071540.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Mycobacterium sp. JLS]
 gi|108770645|gb|ABG09367.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. MCS]
 gi|119695443|gb|ABL92516.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Mycobacterium sp. KMS]
 gi|126235649|gb|ABN99049.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate--D-alanyl-D-alanyl ligase
          [Mycobacterium sp. JLS]
          Length = 497

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
          M  L T   + + + G    I P+      + G +  DSR++     F A+ G   DGHD
Sbjct: 1  MIEL-TLARVAEIVGGRLADITPEDAAATRITGTVEFDSRAVTAGGLFLALPGARSDGHD 59

Query: 56 F 56
          F
Sbjct: 60 F 60


>gi|74316138|ref|YP_313878.1| UDP-N-acetylmuramate--L-alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
 gi|109892754|sp|Q3SMH2|MURC_THIDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|74055633|gb|AAZ96073.1| UDP-N-acetylmuramate--alanine ligase [Thiobacillus denitrificans
           ATCC 25259]
          Length = 463

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 90/425 (21%), Positives = 156/425 (36%), Gaps = 47/425 (11%)

Query: 63  KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA  VV +T +  S           IP+         +  LA   RLR     IAI G+
Sbjct: 63  AGADAVVTSTAVQESNPEVVAAREKKIPIV----PRALM--LAELMRLRQG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L         +      +    T AR+    DF + E   S      
Sbjct: 114 HGKTTTTSLVASILGEAGMDPTYV--IGGKLTAAGTNARLGQG-DFLVAEADES-----D 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P IA++T I   H+  +    + + +A  +  + L   G   L  DD+    +
Sbjct: 166 ASFLYLTPVIAIVTNIDADHMDTYGHDFDRLKTAFVDFCQRLPFYGMAVLCIDDANVREI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQ 294
             +        I ++G    A  +    +    Q    V+ +G +  +V  +  G H   
Sbjct: 226 LPRITKP----ITTYGFDPAAQVRAVDTRFEHGQMRFTVKREGMADLDVTLNQPGLHNVL 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM 353
           N L  + + + + A     +KAL+ FH    R +RY       G    + + Y  +P  M
Sbjct: 282 NALAAIAVATEVGASDAAIVKALAEFHGVGRRFQRYGEHPTKDGGCYWLIDDYGHHPVEM 341

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A ++      P        VL         ++    D  +VLS  +   ++ V+ +G  
Sbjct: 342 AATLAAARGAFPGR----RLVLVFQPHRYSRTRDCFEDFVKVLSETDALVLTEVYPAGEA 397

Query: 411 VLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +   D  AL R++ V       + E +  +   ++  +   DVV+V  + S G  ++  
Sbjct: 398 PIVAADGRALARAVRVAGKVEPVFVENVADVAATVRDLVQADDVVLVMGAGSIG--QVAP 455

Query: 463 LLLEE 467
            L E 
Sbjct: 456 ALGER 460


>gi|205356765|ref|ZP_03223524.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205345332|gb|EDZ31976.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 475

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 124/348 (35%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINTNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I  AHL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L             S                  E    ++ ++ KS 
Sbjct: 270 AFLHSSTQKEEDKLINLYDDKLSLIHSSL-----------------EGLEFKIDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|284799407|ref|ZP_06390126.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
 gi|284797770|gb|EFC53117.1| UDP-N-acetylmuramate--alanine ligase [Neisseria subflava NJ9703]
          Length = 469

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 89/428 (20%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S      
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADES-----D 166

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P ++V+T I   H+  +   ++++  A  +    +   G  FL  D      +
Sbjct: 167 ASFLYLTPIMSVVTNIDEDHMDTYGHSVDKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKISKP----YATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I +       Y E +  L   + + L DGDVV+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRILGKLEPIYCENVADLPQMLLNVLQDGDVVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+ + L+E
Sbjct: 457 RVPSALVE 464


>gi|255536592|ref|YP_003096963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342788|gb|ACU08901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 457

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 118/367 (32%), Gaps = 43/367 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTTT  ++   L +             +IG            D+ + E
Sbjct: 110 NAKIIAITGSNGKTTTTSLIYHILKN----DGLKVGLGGNIGKSFAKQVADESFDYYVLE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L          RPHI+++  ++  HL  ++   EE A AK  I E  E       
Sbjct: 166 VSSFQLD----DIQNFRPHISLLLNLSQDHLDQYNYNYEEYALAKFRIAENQENDNFFIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   + L  K         +S  +               ++  +++Q +        
Sbjct: 222 NKDDEMSQNLLEKLEVKAKMIPFSLKEKLKEGGFFTG-----DKMVVKLQDEFSMDIAEL 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L       IL    ++   +L  F   + R          G    I++S
Sbjct: 277 ALVGNHNVANSLAASIAGKILKISNESIRNSLMTFQAVQHRL---EQVAETGGVRFINDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  + Q +    G            G    + + ++ E L    +  + 
Sbjct: 334 KATNVNATYYALESMKQPTVWIVG------------GIDKGNDYTEI-EDLVKRKVKAIV 380

Query: 406 LSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     + D       + YS  +M       +S    GD V++    +S         
Sbjct: 381 CLGLDNQKIVDFFKSKKDLIYSTSSMAEAVNISKSLAAKGDAVLLSPCCASFDLFENYED 440

Query: 453 NSCGFYR 459
               F +
Sbjct: 441 RGNQFKK 447


>gi|239999603|ref|ZP_04719527.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           35/02]
 gi|240014778|ref|ZP_04721691.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           DGI18]
 gi|240081137|ref|ZP_04725680.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113349|ref|ZP_04727839.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240116304|ref|ZP_04730366.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID18]
 gi|240118591|ref|ZP_04732653.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121301|ref|ZP_04734263.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID24-1]
 gi|240124134|ref|ZP_04737090.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           PID332]
 gi|240126250|ref|ZP_04739136.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254494318|ref|ZP_05107489.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268595414|ref|ZP_06129581.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597248|ref|ZP_06131415.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599423|ref|ZP_06133590.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268601971|ref|ZP_06136138.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268604302|ref|ZP_06138469.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268682759|ref|ZP_06149621.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268684831|ref|ZP_06151693.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291043155|ref|ZP_06568878.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|293398491|ref|ZP_06642669.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
 gi|59718763|gb|AAW90168.1| putative UDP-N-acetylmuramate--alanine ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|193934636|gb|ACF30460.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513358|gb|EEH62703.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 1291]
 gi|268548803|gb|EEZ44221.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551036|gb|EEZ46055.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583554|gb|EEZ48230.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|268586102|gb|EEZ50778.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|268588433|gb|EEZ53109.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|268623043|gb|EEZ55443.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|268625115|gb|EEZ57515.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-92-679]
 gi|291012761|gb|EFE04744.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|291610962|gb|EFF40059.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae F62]
          Length = 506

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCVDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 436 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+ + LLE
Sbjct: 494 RVPSALLE 501


>gi|78187954|ref|YP_375997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlorobium luteolum
           DSM 273]
 gi|122063253|sp|Q3B127|MURD_PELLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78167856|gb|ABB24954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           luteolum DSM 273]
          Length = 460

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 81/390 (20%), Positives = 130/390 (33%), Gaps = 32/390 (8%)

Query: 65  AGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A   VV+      V  I  L      V   +    +LA       +A I  ITG+ GKTT
Sbjct: 69  ADFAVVSPGVPPGVPVIRELERRQIPVHSEI----ELASWF---CRARIAGITGTDGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTH 180
           T  ++     ++ +          +IGVP +       + D  + EL    L        
Sbjct: 122 TATLVQRMAEAVGRLGGYRAYGVGNIGVPFSSKVEEMEERDIAVVELSSYQL----ERCS 177

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             RP  A+IT I P HL  +   I   A AK  I   L  +GT+  N DD       +  
Sbjct: 178 SFRPEAALITNITPDHLDRYGGDIMRYADAKYRIAMNLGSSGTLVYNADDPILRARFSVG 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   +S       D     + +         +L   S        G H   N+L  
Sbjct: 238 GLQFSTVPFSTAGPVGGDPSSGIYLEDGWVHAGLRRLIHTSEFQKGSFRGNHNNSNVLGA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +G+   L  D    ++AL  F   E R        ++     I++S   N  +M+ A+  
Sbjct: 298 IGLARALRLDEKAVLQALREFPGVEHRQ---EFVASKRGSDWINDSKATNVNAMRQALEA 354

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +        GR + + G     G    + +  +A ++       V   G     + DA  
Sbjct: 355 V-------PGRIVLIAG-----GRDKGNDYSAVATLVRE-KADLVVAMGESRQKVADAFR 401

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + V  + T++            G  V+ 
Sbjct: 402 ADVAVVEAATLEDAVRLAAGGAGTGRTVLF 431


>gi|313667818|ref|YP_004048102.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica ST-640]
 gi|313005280|emb|CBN86713.1| UDP-N-acetylmuramate--alanine ligase [Neisseria lactamica 020-06]
          Length = 469

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQESFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 399 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448


>gi|306834707|ref|ZP_07467777.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
 gi|304569411|gb|EFM44906.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Corynebacterium accolens ATCC 49726]
          Length = 153

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 8/112 (7%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +   L Q   G  IG      V+   +DS S+     F A+ G    G  F+       A
Sbjct: 4   SLEKLAQLSHGRVIGDGT-VEVSACGLDSASLPEGALFAALPGTRVHGAQFVGD---TKA 59

Query: 66  GLVVVNTDMVASIGSLS--IPVFGVDDVLGALNKLAVAARLRS--KATIIAI 113
           G V+ +   +  +   +   P+  VDD+   L  +A           T++ I
Sbjct: 60  GAVLTDAPGLDHLRQANETRPIIVVDDIRAVLGPIAAEIYGHPTRDLTVLGI 111


>gi|152996629|ref|YP_001341464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MWYL1]
 gi|150837553|gb|ABR71529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MWYL1]
          Length = 449

 Score = 73.4 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 135/375 (36%), Gaps = 40/375 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A  +AITGS  K+T   ++ + L +  K          ++G+P     +  + D
Sbjct: 103 FCDYVDAPFVAITGSNAKSTVTTLVAMLLQASGKN----AKAGGNLGLPALDL-LAPNTD 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L      TH ++  +A +  ++  H+  +  + E   AK +++ G +   
Sbjct: 158 FYVLELSSFQL----ETTHALQADLACLLNVSEDHMDRYKDLYEYQRAKQKVYRGCKAA- 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N  D     L A+   +   T  S       D +        + +W+   ++    
Sbjct: 213 --VCNKQDILTAPLLAEGVPVRAFTTKS------PDLKEYGLLNDDDGAWLCKGVERLYH 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N+L  L ++ +L  DV +      V     G   R          T 
Sbjct: 265 TSQIALKGSHNHANVLAALAMLELLGVDVLSEAVG-KVLKEFGGLPHRCETVRVLNGVTY 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +    ++ L  +        + + G   +  + S      LA+ ++   +
Sbjct: 324 INDSKGTNVGAT---LAALQGLGSTANKNILLIAGGEGKGADFSA-----LAKPVNNL-V 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V+L G     + + LP +  V + +T+D +   I     +G++V+     +S      
Sbjct: 375 RTVYLFGKDADRIAEVLPSNTDVKHFDTLDQIVASIGQDSKEGEIVLFSPACASLDMYKN 434

Query: 453 ---NSCGFYRLINLL 464
                  F RL+  L
Sbjct: 435 YEMRGAHFARLVAEL 449


>gi|332976674|gb|EGK13514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. 1501(2011)]
          Length = 577

 Score = 73.4 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 79/530 (14%), Positives = 144/530 (27%), Gaps = 101/530 (19%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRS----------IAPQEAFFAIKGPHYDGH- 54
           T   +L                +   +DSR           +A   AF  +K      H 
Sbjct: 35  TLQQILSQPGI-------DIAFSKFVLDSRQLDNEVNTAPSVAAPAAFVLLK-----SHT 82

Query: 55  -------DFILHAVQKGAGLVVVNTDMVA-----SIGSLSIPVFGVDDVLGALNKLAVAA 102
                   +   A +K A  ++   D             + P+  V ++   L  L   +
Sbjct: 83  QPIEKSQQYAQVAAEK-AAFILTEIDPQHLASSTQTAEYACPIIFVANLRDILGSLIQIS 141

Query: 103 ---------------RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                            +    +IA+TG+ GKTT  +++               +     
Sbjct: 142 LLPPASLSSLTHSSDLQQQLPQVIAVTGTNGKTTISQLIAQLCQFSNVAQLQNSAVMGTA 201

Query: 148 GV------------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           G                        R   D    I  L  S  G  +     V   +AV 
Sbjct: 202 GNGRLDSLVQASHTTGDALAVQRFLRQMHDEGVSILALEASSHGLDQQRLQAVLVTVAVY 261

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           T ++  HL     +E+ A AKA +F+     +     +N DD F  L+   +   G K  
Sbjct: 262 TNLSRDHLDYHPDMEDYARAKARLFDTAYFPQLTHAVINADDEFASLMAETARRSGAKVW 321

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
               +S+               + +E  L+G  +EV        +   +L    + ++L 
Sbjct: 322 LYSLRSEQGTINEIANDAYFVANKIEPSLEGVKIEVETSFGPLILHSPLLGRFNVANLLA 381

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN-------------PASMK 354
           A        + +        K    +       + +++ +                 +  
Sbjct: 382 AVAGVMALGIELEDLPALVTKLQGASGRMQRVNVNNDAIDDQGTVLNQGVFIVDYAHTPD 441

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
           A   VL+ +  H  G   A+ G     G         L     L     V L+  +    
Sbjct: 442 ALTQVLTSLKSHCSGNLWAIFG----CGGDRDKGKRPLMAQAGLAVADKVVLTSDNPRSE 497

Query: 413 -------ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   ++  +    H              +        D+VV+  K 
Sbjct: 498 DPAQILEDMQQGMSDEQHQKTKVIADRKQAIQYAVEHAGPQDIVVIAGKG 547


>gi|85373184|ref|YP_457246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
 gi|84786267|gb|ABC62449.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter
           litoralis HTCC2594]
          Length = 459

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 120/406 (29%), Gaps = 62/406 (15%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
             +V   G   +P+ G  D+     +L   AR       +I ITG+ GK+TT  ++T  L
Sbjct: 79  HPIVERAGHFGVPIIG--DI-----ELFAQARSALPPHRVIGITGTNGKSTTTALVTHLL 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG+P+       +    + EL    +   R L        A + 
Sbjct: 132 KEAGV----EARMGGNIGLPILGEEPLPEGGVYVLELSSYQIDLTRSLAC----EAAALL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  + G E  A +K  +F             +D+    +   + +   +     
Sbjct: 184 NITPDHLDRYDGFESYAFSKGRLFTMQGSGQFACFGCEDAQTRAVCNAAQSRRAEGRAIC 243

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            + +        W                           H  QN+   + +V  +    
Sbjct: 244 LEPEQYAAMQGDWPALQG---------------------PHNLQNVAAAIALVEEMGVTR 282

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                 L+ +     R               +++S   NPAS   A++     +      
Sbjct: 283 GDWEAGLTSYSGLPHRM---EVVCEHESVLFVNDSKATNPASTAPALAAW--PADPEPRV 337

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V G   E G               L NI   +  G       + L   + V  SE +
Sbjct: 338 HWIVGGLAKEDGLGECE--------AQLGNIKRAYAIGEAGPRFAELLGGRVPVERSELI 389

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                   S+   GD+V++    +S             F +L+  L
Sbjct: 390 CEAVKQAVSNAEAGDIVLLSPACASFDQFRDFEKRGEHFRQLVGAL 435


>gi|319938114|ref|ZP_08012512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
 gi|319806635|gb|EFW03284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Coprobacillus sp.
           29_1]
          Length = 447

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 129/405 (31%), Gaps = 53/405 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V  +    IPV           ++ +A RL      IAITG+ GKTTT  ++   L 
Sbjct: 81  KPFVLRLKERGIPV---------YTEIELAYRLSQPQNYIAITGTNGKTTTVTLIRDILK 131

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +  +     G+    +   +    +    D+  + E+    L +I        P +A I 
Sbjct: 132 NAGRQVCLAGNVGTPLSELVLNEDLLHKSDYDVVLEMSNFQLLDIDAFH----PRVATII 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + P HL   + +EE  ++K  I+   +       N DD   +    K        I SF
Sbjct: 188 NLTPDHLDYMASLEEYYTSKTRIYMNQDHNDIYLQNKDDVVLKEYLQKY--PPQAKIVSF 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              + AD  ++      +   +               +G H  QNM++ +        DV
Sbjct: 246 SLEQEADCMIKNDAIYYQGQHIINLDD-------IKIVGRHNIQNMMIAICACIHSGIDV 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +    L+ F   E R                ++S   N  +   A+          E  
Sbjct: 299 QSIHDTLAAFTGVEHRI---EFVREYQGVKYYNDSKATNTDAAIIALKSF-------EKP 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I ++G     G        ++A       ISH+   G         + +  +    + M
Sbjct: 349 VILLMG-----GHEKGLDLREMANY--QKQISHLICFGEAGERFAKDM-KCPNTDIVKYM 400

Query: 431 DGLFLFIQSSLVDGDVVVVKSS------------NSCGFYRLINL 463
               +  +     GDVV++  S                F  ++N 
Sbjct: 401 KDAIIKAKELAKSGDVVLLSPSTSSYDEFSGYEERGNVFKHIVNK 445


>gi|161870654|ref|YP_001599827.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis 053442]
 gi|189082912|sp|A9M2H5|MURD_NEIM0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|161596207|gb|ABX73867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 053442]
          Length = 445

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 123/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +     R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                  +      +    E   ++   
Sbjct: 214 -------------DGVQVLNADDAFCRAMKRAGREVKWFSLEYEADFWLERETGRLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLIATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G   L ++  L    +++    T++       +    GD+V++
Sbjct: 365 LAGKAKGVFLIGVDALQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|296284497|ref|ZP_06862495.1| UDP-N-acetylmuramate--L-alanine ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 481

 Score = 73.0 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 74/380 (19%), Positives = 124/380 (32%), Gaps = 42/380 (11%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   RL+S    IAI G+ GKTTT  M+   L   +     I          
Sbjct: 95  VRRA-EMLAELMRLKS---TIAIAGTHGKTTTTSMIAGLLDCGEIDPTVINGGVIEQ--- 147

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                   D D+ + E   S           +   IAV+T I P HL ++   E +  A 
Sbjct: 148 FGSNARLGDSDWMVVEADES-----DGSFLRLDGTIAVVTNIDPEHLDHYGDFEGVKRAF 202

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E    +   G   L  D    + + AK   +  + + ++G S  AD      K  +  +
Sbjct: 203 VEFIHNVPFYGAAILCVDHPEVQAVIAK---VRDRRVITYGFSLQADICAVNVKPEAGGN 259

Query: 271 WMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             +V ++ +  E            G H  QN L  + +   +    +   +  + F    
Sbjct: 260 RFDVMVRQRGQEDRRIENVFLPMPGRHNVQNALAAIAVSLEMNCSDEVIREGFARFGGVR 319

Query: 325 GRGKRYRCALNQGFFTLIDESYNANP--------------ASMKAAISVLSQISPHGEGR 370
            R  R      +G    + + Y  +P               +M     V++ + PH   R
Sbjct: 320 RRFTRVGTVPVEGGSATVIDDYAHHPVEIRAVLSAARESVDAMDTPARVIAVMQPHRFSR 379

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSE 428
              ++GD       +   ++          +      G    AL D +      H     
Sbjct: 380 LGELMGDFQACFNEADQVYVAPVYAAGEDPVE-----GVDAAALVDGIKSLGHRHAQTIA 434

Query: 429 TMDGLFLFIQSSLVDGDVVV 448
             + L   +   L  GD+V+
Sbjct: 435 DREELVRALAPQLEPGDLVL 454


>gi|240017226|ref|ZP_04723766.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           FA6140]
          Length = 506

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCVDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  ++L+  +   ++ V+ 
Sbjct: 380 PVEMAATLAAARGAYPDK----RLVLAFQPHRYTRTRDLFEDFTKILNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 436 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+ + LLE
Sbjct: 494 RVPSALLE 501


>gi|260063714|ref|YP_003196794.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
 gi|88783159|gb|EAR14332.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Robiginitalea biformata HTCC2501]
          Length = 464

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/382 (14%), Positives = 109/382 (28%), Gaps = 43/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A       +AT++AITGS GKTTT  +    L           +   +IG        
Sbjct: 112 EFASWY---CQATLVAITGSNGKTTTAMLTHHLLRQGGMD----AALAGNIGDSFAAMVA 164

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+    L          RPHIAVIT I P HL  +    +   A  +    
Sbjct: 165 RESHPCYVLEVSSFQLD----GILGFRPHIAVITNITPDHLDRYEYRMDRYIASKKRIAE 220

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +      +   D      +  +       +      ++                 +   
Sbjct: 221 NQGPSDFLVFDRDDPVLA-REINPEAFAANLLPLTLEEDPGAAGWLKGNDINIQLEKENT 279

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H  +N +    +  +L    ++  ++++ F        R    L  
Sbjct: 280 PLTMSNDTLALEGRHNMKNTMAAATVARLLGIRKESIRESVANFQG---APHRLERVLKI 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I++S   N  +   A+  ++  +    G            G    + +  L  ++
Sbjct: 337 HHVQYINDSKATNVNATFYALDSMTAPTVWIVG------------GVDKGNDYKPLMPLV 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV---KS 451
               +  +   G     + +A   ++ +   ET  M             GD V++    +
Sbjct: 385 RE-KVKAIICLGADNSRIVEAFGNAVDL-LVETYAMSEAVKVAYKIAERGDNVLLSPACA 442

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +  L
Sbjct: 443 SFDLFKNYEDRGDQFKDAVKAL 464


>gi|283954368|ref|ZP_06371889.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794167|gb|EFC32915.1| UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 475

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 125/346 (36%), Gaps = 31/346 (8%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFG 163
                II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D    
Sbjct: 152 NQNLKIILITASFGKTSIKNFLYELLKDNFKSYKTPRSVNTLLGIVADINVNLTPDTQIY 211

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E G    G+I  +T  + PHI+++  I  AHL  F  +E I S K E           
Sbjct: 212 IAEAGARLKGDIDEITRFLEPHISIVGEIGNAHLEYFKSVENICSTKLEALNSKRLEKAF 271

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +      + L +           S                  +    +V ++ K  + 
Sbjct: 272 LHSSTQKEEDKLISLYDDKLSFIHSSL-----------------KGLEFKVNIENKLYDF 314

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G   AQN+   +   + L   ++   K +   +  E R +     L++    +ID
Sbjct: 315 KSQILGAFNAQNLCACILCANYLGIKLEKIQKQVLSINSVEHRLQ----VLSREPKFIID 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +N N   M  +  +      + +GR++ V   + E+   S+  +I LA+V++      
Sbjct: 371 DGFNGNFKGMSTSYELCK----NYKGRKVLVSPGIVEV---SEEENIKLAKVINECFDLA 423

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  +    K  L   I     +    L   +     +GD+++ 
Sbjct: 424 IITAQVNAEIFKKELK--IKTIILKEKSQLVQTLAKETKNGDLILF 467


>gi|227499842|ref|ZP_03929935.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
 gi|227217951|gb|EEI83224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           tetradius ATCC 35098]
          Length = 438

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/360 (18%), Positives = 120/360 (33%), Gaps = 32/360 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            RL  +A II+ITG+ GKT++  M+   ++              +IG  +          
Sbjct: 91  YRLYPQAKIISITGTNGKTSSTSMVNHIVNEACI----KSIAVGNIGEGILWQMYNNKDA 146

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F   EL    L + +       PHIA IT I   H+      E+  ++K  I +  ++  
Sbjct: 147 FFACELSSFQLHDTK----TYHPHIACITNITEDHIDWHGSFEDYINSKLNITKNQDEND 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N++D   +  K    A   +  +S          L+      +       +     
Sbjct: 203 FLIINHEDKILQDHKKDYKAQVYE--FSSKNEVERGAYLKDGAIYLKDKEEIKVIDVD-- 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H  +N+++ L    +    +   IK L  F   E R              +
Sbjct: 259 --ELSVIGSHNYENIMVALLSTYLFGIKIQDIIKGLRSFKAIEHRL---EYVDTIRKVKI 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S   AI   ++      G            G      + D  +       
Sbjct: 314 YNDSKGTNVDSSIKAIESFTEPLIIIAG------------GYDKHIDYTDYVKSFKKNG- 360

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
             + + G     LK       +    +E M+        +  +GDV+++  +S S G Y+
Sbjct: 361 KLMVIMGQTKDKLKKLCENYQVAYKEAEDMEDAIRICFENAKEGDVILLSPASASWGMYK 420


>gi|148926962|ref|ZP_01810639.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845046|gb|EDK22143.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-- ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 389

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/348 (20%), Positives = 126/348 (36%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G+     A +  D  
Sbjct: 64  RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIIADINANLSQDTQ 123

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +TH ++P I+++  I  AHL  F  +E I S K E         
Sbjct: 124 IYIAEAGARLKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSKRLEK 183

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 184 AFLHSSTQKEEDKLISLYDDKLSLIHSSL-----------------EGLEFKVDIENKSY 226

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 227 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 282

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 283 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 335

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 336 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 381


>gi|116052448|ref|YP_792760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|115587669|gb|ABJ13684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 448

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 119/363 (32%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FAREAKAPIVAITGSNAKSTVTTLVGEMAVAADKRV----AVGGNLGTPALDL-LADDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  + G+ +   AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETCDRLNA----EVATVLNVSEDHMDRYDGMADYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SF  +K  DF+     +   Q W+  Q      
Sbjct: 214 VNRADA--------LTRPLIADTVPCWSFDLNKP-DFKAFGLIEEDGQKWLAFQFDKLLP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F     R    +    +   + 
Sbjct: 265 VGELKIRGAHNYSNALAALALGHAVGLPFDAMLGALKAFSGLAHRC---QWVRERQGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +    +G+ + + G   + G         +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIDGKLVLLAGGDGK-GADFHDLREPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  ++ +    T+D           +GD V++    +S      
Sbjct: 375 --VVLLGRDAGLIAQALGNAVPLVRVATLDEAVRQAAELAREGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|325954319|ref|YP_004237979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
 gi|323436937|gb|ADX67401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Weeksella virosa
           DSM 16922]
          Length = 443

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 114/370 (30%), Gaps = 43/370 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITGS GKTTT  ++   +               +IG            ++ + E+ 
Sbjct: 103 KIIAITGSNGKTTTTSLMYHIMKEAGLDV----GLCGNIGKSFAQLVAEDPHEYYVIEIS 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
              L          +P+IA+I  I P HL  + +  ++ A +K  I E          N 
Sbjct: 159 SFQLD----DIRFFKPYIAIILNITPDHLDRYENNFDKYAHSKFRITENQTDKEYFVYNV 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     L  +      KT +S         + +K K  + +   E++    S  +    
Sbjct: 215 DDEKINELIKELKIKANKTSFS--------MKDKKQKAYANEKIFEIKDNDNSFLMPIAD 266

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G     N+  +L   +                   +    R    L  G    I++S  
Sbjct: 267 LGLIGKHNVSNSLAAATAANILKIRKDVIKRSLSDFKSVEHRLENVLKIGGIEFINDSKA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +   A+  +        G            G    + + +L   +    +  +   
Sbjct: 327 TNVNATYFALESMKNPVIWIVG------------GTDKGNDYSELMPFVKK-KVKAIVCL 373

Query: 408 GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
           G     + +A    +  +  ++TM             GD V++    +S           
Sbjct: 374 GVDNHKIIEAFSGVVEKITETKTMKDAVRAAYMYGEKGDTVLLSPACASFDLFTSYQDRG 433

Query: 455 CGFYRLINLL 464
             F + +  L
Sbjct: 434 NQFKKEVKEL 443


>gi|297616979|ref|YP_003702138.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144816|gb|ADI01573.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 456

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/382 (19%), Positives = 129/382 (33%), Gaps = 43/382 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                     I+AITG+ GKTTT   +   L           +   +IGVPL      ++
Sbjct: 102 AYHLKNDAVEIVAITGTNGKTTTTAFVAEILDKSGVN----TAACGNIGVPLISVIDEIE 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                 E+    L           P +A +  I P HL     +E+   AKA+I      
Sbjct: 158 HGVVSVEVSSFQL----ETIREFHPRVAAVLNITPDHLDRHGTMEQYVEAKAKILSNQGP 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LNY+D++   L  K+ A      +S  +       +   K    ++ +       
Sbjct: 214 DDFSVLNYEDAWVRRL--KTEAKSQVIFFSTARRLPRGVYVEDGKI---KARLYDDEVVI 268

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N+L  +GI   L    DT    L  F     R +  R        
Sbjct: 269 CPRENVALRGEHNLENVLCAVGIAIALGVKPDTIADTLRSFKGVRHRLEEVRRVNGV--- 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   NP S   A+    +         I + G   +  + +      +   +   
Sbjct: 326 LYVNDSKGTNPESTIKALQAFQE-------PVILIAGGRNKGADFT------VLSRVIKD 372

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            + H+ L G   L +++ +      H+  +++ +      +     GDVV++    +S  
Sbjct: 373 KVRHLVLVGEASLLIREKVLEQGFQHIDVAKSFEEAVYRAKELARPGDVVLLSPACASWD 432

Query: 453 -------NSCGFYRLINLLLEE 467
                      F +L+N L EE
Sbjct: 433 MFNSFEERGDLFCQLVNSLEEE 454


>gi|298369634|ref|ZP_06980951.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282191|gb|EFI23679.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 469

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 82/410 (20%), Positives = 143/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAANEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D +    +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCVDSAHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +  K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENIGAQMKFTVHVNMKGHERKTFGVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   + L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGAPVEAIQQGLLGFEGVGRRFQKYGDIKLPNGGTALVVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  M A ++      P        VL         ++    D  ++L+  ++   + V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKILNTVDLLVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E++  L   + + L DGD+V+
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCESVSELPAMLLNVLQDGDMVL 448


>gi|237751715|ref|ZP_04582195.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
 gi|229373081|gb|EEO23472.1| d-alanyl-d-alanine-adding enzyme [Helicobacter bilis ATCC 43879]
          Length = 494

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 134/357 (37%), Gaps = 22/357 (6%)

Query: 95  LNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLT 152
             K A     +     IIAITGS GKT+ K  +   L      YA   S N + G V   
Sbjct: 150 YAKKAHNKLQQLQNLKIIAITGSYGKTSIKNFIAQILQQQFSVYATPRSVNTYKGLVADI 209

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    +  I E G   +G+I+ +  L++ H AVI  I  AH+  F  IE     K E
Sbjct: 210 NQNINATHEIYIAEAGARQVGDIKEIAELLQHHYAVIGKIGHAHIEYFKNIETTTKTKFE 269

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +      T       +        + ++ L  +   +  K      +L+  +   E++  
Sbjct: 270 LLYSTRLTHAFVQKDN--------SYANVLPPQFEANMKKIVAYPPKLKDIESTLEKTSF 321

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++L    +      +G     N+ + + I   L  D++   KA++   P   R      
Sbjct: 322 SLELDSVFVPFTCKILGRFNIDNIAVAIMIAKTLGMDINALQKAVAKLTPIPHRL----Q 377

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            ++     +ID+S+N N   M  AI     ++    GR+I V   + E     ++ +I+L
Sbjct: 378 RIDTAQKVIIDDSFNGNLEGMSEAIR----LASLHNGRKIIVTPGLVE---HDEASNIEL 430

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A+ +         ++G     + D    +      +    L   +  S    D+V+ 
Sbjct: 431 AQKIDKV-FDIAIITGDLNAKILDTHITTPQKIILKDKTKLEEILAESGKQNDLVLF 486


>gi|212550833|ref|YP_002309150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212549071|dbj|BAG83739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 452

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 118/378 (31%), Gaps = 40/378 (10%)

Query: 74  MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           ++  +   +IP+        +  + A      +KA  I ITGS GKTTT  ++   L   
Sbjct: 86  IIEKMKERNIPII-------SEIEFAGYY---TKAKTICITGSNGKTTTATLIYYILKYA 135

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
                   +   ++G  L +     D ++ + EL    L       +  +  IAV+  I 
Sbjct: 136 GFDV----ALVGNVGKSLAMQVAEKDCNYYVIELSSFQLD----GMYHFKADIAVLLNIT 187

Query: 194 PAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             HL  +   I+   ++K  I +   K        DD        K         +S  K
Sbjct: 188 SDHLDCYEYEIQNYINSKMRIIQNQTKNDIFIYWSDDLVIAREIQKMKPTVTFYPFSEQK 247

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                          E +     +  K         G H   N L    +  +L    + 
Sbjct: 248 QVGVKAYTENGNIKVETANGMFSMPQKY----LVLRGKHNLYNSLAATAVAKLLGVKDEM 303

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              +   F   E R ++            I++S   N  S    +  +           I
Sbjct: 304 LEHSFLNFKAIEHRMEKVAHIKGVD---YINDSKATNVNSCFYVLQSMRT-------PII 353

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMD 431
            +LG + +  + S+       E L       +   G     L D     ++V Y  ++M 
Sbjct: 354 LILGGVDKGNDYSE------IEGLVREKCRALIFLGVDNSKLHDFFDGKVNVIYDVDSMK 407

Query: 432 GLFLFIQSSLVDGDVVVV 449
               +      +GD V++
Sbjct: 408 KAIQYAYKIAQEGDTVLL 425


>gi|319639047|ref|ZP_07993804.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
 gi|317399625|gb|EFV80289.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria mucosa C102]
          Length = 469

 Score = 73.0 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 90/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S      
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADES-----D 166

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 167 ASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKISKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQEPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y       G   L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGAALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPQMLLNVLQDGDVVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+ + L+E
Sbjct: 457 RVPSALVE 464


>gi|240128804|ref|ZP_04741465.1| UDP-N-acetylmuramate--L-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687186|ref|ZP_06154048.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268627470|gb|EEZ59870.1| UDP-N-acetylmuramate-alanine ligase [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 506

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 92/428 (21%), Positives = 151/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVASTAVKKENPEVVAALERQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCVDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLAAARGAYPDK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 436 AGEEPVAAADSRALARAIRVLGKLEPIYCENVADLPQMLMNVLQDGDVVLNMGAGSI--N 493

Query: 459 RLINLLLE 466
           R+ + LLE
Sbjct: 494 RVPSALLE 501


>gi|312134659|ref|YP_004001997.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
 gi|311774710|gb|ADQ04197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor owensensis OL]
          Length = 455

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 88/423 (20%), Positives = 141/423 (33%), Gaps = 47/423 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + K   LVVV+        S  I V      +  + ++ +A R      I+AITG+ 
Sbjct: 64  DEVIDK-VQLVVVS---PGVPLSKRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L    K          +IG+P         +    + E+    L  I+
Sbjct: 120 GKTTTTTLVGEILKKQHKDV----VVCGNIGLPFIDTVETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++TG   LNYD+S    L 
Sbjct: 176 YF----KPMVGCILNITPDHLNRHMTMENYIKAKMRIFENIDETGYTVLNYDNSVTRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                L    +  F K+KN    +   ++       E + Q    +      G H  +N 
Sbjct: 232 ----GLAKGNVIVFSKNKNQFKNVVFIEENKIYFTFEGKTQEVMRKDEIFIPGEHNLENA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +          DT    L  F   E R                ++S   N  + + A
Sbjct: 288 LAAIACTLPFGVTKDTIEYVLKNFKGVEHRI---EFVTEINGIKFYNDSKGTNTDAAEKA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           IS         E   I + G     G          A +++   +  V+L G     +  
Sbjct: 345 ISAF-------ESPIILIAG-----GYDKGESFERFAGLIAK-KVKKVFLLGQTKQKIAS 391

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
            L +    +      +             GDVV++    +S             F   +N
Sbjct: 392 ELEKIGYRNFELVSNLKEAVEKSFEYAKSGDVVLLSPACASWDMFENYEQRGKMFKEYVN 451

Query: 463 LLL 465
            LL
Sbjct: 452 KLL 454


>gi|34556863|ref|NP_906678.1| D-alanyl-D-alanine-adding enzyme [Wolinella succinogenes DSM 1740]
 gi|34482578|emb|CAE09578.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Wolinella succinogenes]
          Length = 481

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 72/363 (19%), Positives = 139/363 (38%), Gaps = 34/363 (9%)

Query: 92  LGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
              LN+ A AA+ +       TIIAITGS GKT+ K  L   L+   K +A   S N   
Sbjct: 140 RVLLNRYATAAKDKLASMPNLTIIAITGSYGKTSLKNFLAQILNDNFKVHASPRSVNTFA 199

Query: 148 G-VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           G V      +    D  I E G    G+I+ +  L+  H  ++  +   H+  F  +E +
Sbjct: 200 GIVADINENLSPLSDIYIAEAGARTRGDIKEIGVLLEHHYGIVGKVGEQHMEYFRTLENV 259

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K E+ +                      +  +    T  S  K+ +   + R  K  
Sbjct: 260 RETKFELAQSPR-----------------LKELFSYEGNTPPSGIKATSFPTETRNIKAT 302

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            + +  E+ ++G+        +G     N+   + +   L   ++   + ++   P   R
Sbjct: 303 LKGTSFEMLIEGQFYPFETEVLGEFNVTNISAAILVALRLGIPIEKIQRQVARLKPIPHR 362

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            ++    L      ++D+S+N N   M  AI     +S    GR++ V   + E    ++
Sbjct: 363 LQKMEVNLK----LILDDSFNGNLEGMLEAIR----LSSLYYGRKVIVTPGLVE---STE 411

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +  LA+ ++        L+G   L    A  +       +  + L   ++++  +GD+
Sbjct: 412 EANTTLAQAINET-FDIAILTGELNLKTLSAHIQKPQKVVVKEKEALEEVLKATTREGDL 470

Query: 447 VVV 449
           ++ 
Sbjct: 471 ILF 473


>gi|332638190|ref|ZP_08417053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           cibaria KACC 11862]
          Length = 447

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 58/340 (17%), Positives = 114/340 (33%), Gaps = 30/340 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TGS GKTTT EM+   L +   +   I    N       +A    D D  + EL   
Sbjct: 106 IALTGSNGKTTTTEMIAAVLRTQATSDHQIVVAGNIGTPVSEVAPSLRDTDTLVTELSSF 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L          +P+IA+IT I  +HL      E   +AK  I +       + +NYD +
Sbjct: 166 QLM----GMPEAKPNIAIITNIFASHLDYHGSRENYVAAKMGITKNQTADDYLVINYDRA 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
            +  L  ++ A  +    S   +          +   +        +           G 
Sbjct: 222 EWRELAQQTAATVVPV--SRLDNSEDGAYEHDGQLYYQG-------ELVMAAAELGVPGD 272

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N L+ + +  +     +   +AL  F   E R    +         + ++S   + 
Sbjct: 273 HNVENALVAIAVGKLRHVPTNDIAEALRRFTGVEHRL---QFVGTFDGRQVYNDSKATDI 329

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +        ++++  G    + +L    + G+        +       ++  + + G  
Sbjct: 330 EA--------TEMALSGFTAPVVLLAGGLDRGDDQMRLLQAM-----KAHVKALIVFGQT 376

Query: 411 VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +       +I V ++                GD+V++
Sbjct: 377 ADKVAAVGEALAIPVVHATDAPAAVAPAFELSEPGDIVLL 416


>gi|57237640|ref|YP_178888.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|121613032|ref|YP_001000484.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005421|ref|ZP_02271179.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|57166444|gb|AAW35223.1| Mur ligase family protein [Campylobacter jejuni RM1221]
 gi|87249533|gb|EAQ72493.1| Mur ligase family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058249|gb|ADT72578.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 475

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 124/348 (35%), Gaps = 31/348 (8%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVD 161
           R      II IT S GKT+ K  L   L    K+Y    S N  +G V      +  D  
Sbjct: 150 RANENLKIILITASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNNLSQDTQ 209

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I E G    G+I  +T  ++PHI+++  I   HL  F  +E I S K E         
Sbjct: 210 IYIAEAGARLKGDIDEITRFLQPHISIVGEIGNVHLEYFKSVENILSTKLEALNSKRLEK 269

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + L +           S                  E    +V ++ KS 
Sbjct: 270 AFLHSSTQKEGDKLISLYDEKLSLIHSSL-----------------EGLEFKVDIENKSY 312

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +     +G   AQN+ + +     L   ++   K +   +  E R +     L++    +
Sbjct: 313 DFKSQILGDFNAQNLCVCILCAHYLGIKLEKIQKQVLNINSVEHRLQ----VLSREPKFI 368

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           ID+ +N N   M  +  +         GR++ V   + E+   S+  +I LA++++    
Sbjct: 369 IDDGFNGNFKGMSTSYKLCKSYK----GRKVLVSPGIVEV---SEEENIKLAKIINECFD 421

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 422 LAIISAQINAEIFKKELK--IKTIILKEKSQLVQTLAKETKHGDLILF 467


>gi|118602749|ref|YP_903964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567688|gb|ABL02493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 433

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 138/393 (35%), Gaps = 53/393 (13%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI   + +   +V+   +        +IPV    D+    ++ A       KA II ITG
Sbjct: 66  FISPGIAQNESIVIWAKEQ-------NIPVI--SDI-ELFSRFA-------KAPIIGITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+T  ++LT  + +     A       +IG P+    +   +++ + EL    L   
Sbjct: 109 SNGKSTVTQLLTQMIINAGMQVAMG----GNIGTPVLDC-LNEKIEYYVLELSSYQLDYS 163

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L  +V     V+  I P HL  +   +   ++K  +++  +                 
Sbjct: 164 HHLNLIV----GVVLNITPDHLDRYQNFKHYINSKLSLYQHCQHLVIN------------ 207

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +           FG S            C +  ++               IG H  +N
Sbjct: 208 LDEPLTPPKVNAKCFGISIPKQADDFGTVTCHDTYYLLKGDNVLMSINEVQLIGEHNTRN 267

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  L +   +   + + I+++  F   E R         +      ++S   N  S   
Sbjct: 268 ILAALALGDQIRLPIISMIQSIKNFKGLEHRL---EWVAKKQNIDYYNDSKATNAISTIT 324

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           AI  L +   +     + +LG     G   Q  +  L ++++   I+ V L G      +
Sbjct: 325 AIQALMRKHQN----IVLILG-----GIAKQENYTPLFKLINKS-ITSVILIGQSAQQFE 374

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +  + +  +++TM        S + +G +++
Sbjct: 375 QEI--NTNTSHAKTMKDAVNVAHSMINNGTILL 405


>gi|145641282|ref|ZP_01796862.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|145274119|gb|EDK13985.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae 22.4-21]
          Length = 393

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 109/372 (29%), Gaps = 40/372 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T++ +TG+ GKTT  ++L      +    A +G+  N  G+   +          +  
Sbjct: 10  NLTLVGVTGTNGKTTISQLLAQWAELLGHRAAVMGTIGN--GLFGQIVEAKNTTGSAVEI 67

Query: 167 LGM----------------SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                              S  G  +     +    A+ T +   HL     +E  A+AK
Sbjct: 68  QSSLSTFKHAGADFTSIEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAK 127

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +F  L+    +    D+  ++ L     A+ +     F    +   +        + +
Sbjct: 128 KRLFTELDTQIKVINADDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGA 187

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +  +    +  +    IG     N+L+ +  +      ++  +          GR +  
Sbjct: 188 DITFESSWGNGVLHSPLIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMI 247

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R             + +A   ++ AA         H +G    + G     G        
Sbjct: 248 RYPNKPTVIVDYAHTPDALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKR 296

Query: 391 DLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            L   ++      + ++  +            +         V           F   S 
Sbjct: 297 PLMAQVAEQFAEKIIVTKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESA 356

Query: 442 VDGDVVVV--KS 451
           V+ DV+++  K 
Sbjct: 357 VENDVILIAGKG 368


>gi|325269661|ref|ZP_08136274.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
 gi|324988029|gb|EGC19999.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           multiformis DSM 16608]
          Length = 498

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L        + I E
Sbjct: 156 DSKMICITGSNGKTTTTSLIYHIFKDAGYD----AGLAGNIGNSLALQVAEDPHAYYIIE 211

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   K  +   
Sbjct: 212 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTKDDSFIY 267

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +   +S  K   +   + + +   E+            +   
Sbjct: 268 WNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYKIEK-----PEPFNMEQEDL 322

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+LS F   E R               I++S
Sbjct: 323 SLTGRHNIYNSLAAGIASGISGIRKENIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 379

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + E++       V+
Sbjct: 380 KATNVDACWYALESMRT-------PTILILG-----GKDKGNDYDPIKELVREKCAGLVY 427

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      I V  + +M        S    GD V++    +S         
Sbjct: 428 L-GADNKKLHDNFDSLGIPVCDTHSMKDCVAACASMAKPGDTVLLSPCCASFDLFKNMED 486

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 487 RGDQFKSLVRAL 498


>gi|296272623|ref|YP_003655254.1| Mur ligase middle domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296096797|gb|ADG92747.1| Mur ligase middle domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 478

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 118/344 (34%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              IIAIT S GKT+ K  L   L S    Y    S N   G+ L + R +P +    I 
Sbjct: 156 DLKIIAITASYGKTSIKNYLYQILKSKFNAYKTPRSVNTLAGLVLDVNRDLPENTQIYIA 215

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +++ +    A++  +   H+  F  ++ I   K EI +  +       
Sbjct: 216 EAGARMQGDIEEISNFLHQDYAILGQVGEQHIEYFKTLDNIIHTKMEILKSPKMIKAFVH 275

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       K       T                 K   +  W +V +  K      
Sbjct: 276 ESVPILDYEKIEKFPNDLNIT-----------------KSNLDGIWFDVNIDEKQEHFYA 318

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + +   L   +D    AL    P E R ++           +ID+S
Sbjct: 319 PILGSFNAVNLTACILMAKELGMSIDQIKIALDKIKPVEHRLQKIEAGGK----VIIDDS 374

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A+++        +GR++ +   + E  + +      LA+ ++  +   V 
Sbjct: 375 FNGNFEGMLEAVNLC----SEYKGRKVIITPGLVESTDETNIL---LAKEINK-HFDFVI 426

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L+G     L             +    +   +      GD+++ 
Sbjct: 427 LTGSLNTHLFSDNIDKNKQFILKDKSKMEETLIEKTRAGDLILF 470


>gi|32265627|ref|NP_859659.1| hypothetical protein HH0128 [Helicobacter hepaticus ATCC 51449]
 gi|32261675|gb|AAP76725.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 493

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 125/345 (36%), Gaps = 24/345 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+  II +TGS GKT+ K  L   L    + YA   S N H G V      +    +  I
Sbjct: 164 SRLIIIGVTGSYGKTSMKNFLAQILKEKYRVYATPRSVNTHTGIVADINQNLDYITEIYI 223

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +         
Sbjct: 224 IEAGARLKGDIALISQFLNPHYAVIGEVGEQHLEYFKSLENIVETKFELLQSSRLKK--- 280

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     +   +            K +     +R      + +  E+ ++G+     
Sbjct: 281 --------AFVFKDNPKSPHIEPNITKKIQYFPENVRNIDANLDGTSFELFIKGEWHHFE 332

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +   L   V+   KA+    P   R  + +         +ID+
Sbjct: 333 TMVLGVFNVVNLSAAIYMGVELGLQVEEIQKAVKRIEPIPHRLNKIQT----HQKLIIDD 388

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +N N   MK AI + S      +GR+I V   + E    ++  +I+LA+ +       V
Sbjct: 389 GFNGNLKGMKEAIRLCSLY----QGRKIIVTPGIVE---STKEANIELAQAIDKV-FDIV 440

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     +      +      +    L   ++S     D+V+ 
Sbjct: 441 IITGELNAKILSKHIYNTQKITLKDKSMLEDMLKSCSQAHDLVLF 485


>gi|326334992|ref|ZP_08201192.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692797|gb|EGD34736.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 445

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 125/383 (32%), Gaps = 45/383 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      ++A IIA+TGS GKTTT  +L   L     +         +IG        
Sbjct: 93  EFASRY---TQAKIIAVTGSNGKTTTTSLLYHLLEQAGLSI----GVGGNIGNSFARMVA 145

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               ++ + E+    L +I       RPHIA++  I P HL  ++   +    AK  I E
Sbjct: 146 QEPKEYYVLEISSFQLDDIS----SFRPHIALLLNITPDHLDRYNYQFQNYIDAKFRITE 201

Query: 216 GLEKTGTIFLNYDDSFF-ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +   +  + DD    E L  +         +S  KS          K          
Sbjct: 202 FQSQADFLIYDADDPVLQEELAKRKDIKAQCIPFSLEKSNEQGAYCLDDKLFH---ITIN 258

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q + +         G H  +N++       +L    +   K+L  F     R +  +   
Sbjct: 259 QNKFEMSIRELTIKGKHNLKNVMGASVAAKLLNIRNENIRKSLMTFQGVPHRLEFVKEVG 318

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   N  S+  A+  +       +G    V       G+   + +  L  
Sbjct: 319 EV---RYINDSKATNVNSVYYALDSM------PDGLIWIV------GGQDKGNDYNPLIP 363

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---K 450
            +S   +  +   G     +       +     + +M+      +    +GD V++    
Sbjct: 364 YVSQ-KVKAIVCLGLDNQKIIQTFQSIVPTIIETHSMEDAVQVSRGLSEEGDTVLLSPAC 422

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F   +N+L
Sbjct: 423 ASFDLFQSYEDRGNQFKHYVNML 445


>gi|255066169|ref|ZP_05318024.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
 gi|255049714|gb|EET45178.1| UDP-N-acetylmuramate--alanine ligase [Neisseria sicca ATCC 29256]
          Length = 469

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 143/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDAADIYATDIESVGAQMKFTVHVQMKGHEQAPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   + L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQRGLLGFEGVGRRFQKYGDMKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448


>gi|313619830|gb|EFR91420.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6- diaminopimelate-D
          [Listeria innocua FSL S4-378]
          Length = 79

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 6  TFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
          T  +++  +             + GI  D+R I   + F    G   DGH+F+  A + G
Sbjct: 17 TVGEVVAMLDSSIHVDTFRDVVITGICFDTRQIKSGDLFVPFVGNLRDGHEFVSQAREMG 76

Query: 65 AGL 67
          A  
Sbjct: 77 AVA 79


>gi|308811498|ref|XP_003083057.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
 gi|116054935|emb|CAL57012.1| putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate ligase; 54319-51 (ISS) [Ostreococcus
           tauri]
          Length = 657

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 12/169 (7%)

Query: 7   FHDL-LQA-IQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFA-IKGPHYDGHDFILHAV 61
             ++   A +     G        ++GI+ D  ++   + F   + G    G      AV
Sbjct: 59  LREIFADAEVDAEWYGVDEDEDVEISGIANDINALLSGDLFVCPVGGEA--GASLAREAV 116

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGK 119
             G   +V +  +    G   +P   V +V  AL  +A           T IA+TG+VGK
Sbjct: 117 AAGPVAIVASERVE---GVADVPCAVVANVDEALADIARVFYGDPSTALTAIALTGAVGK 173

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           TTT  ++     +       +GS  N++ V      + +    G++E  
Sbjct: 174 TTTSYLVKSVFEAADIKMGLVGSNGNYVRVDFEEDDLKLTTQGGVWESD 222


>gi|42518896|ref|NP_964826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii NCC 533]
 gi|62900556|sp|Q74JY5|MURD_LACJO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|41583182|gb|AAS08792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii NCC 533]
          Length = 460

 Score = 72.6 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 121/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IPV    +   AL          S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKAEKLDIPVI--TEPEIAL--------NVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++         D  + E+    L         ++P +A I
Sbjct: 136 DHNLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  K        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQKN---ILEKELDKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHHIMKISDIKIPGIHNQQNCLVAIAISKLMGA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +    ++  + L G     L DA  ++    +  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|117924065|ref|YP_864682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
 gi|117607821|gb|ABK43276.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Magnetococcus sp.
           MC-1]
          Length = 454

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 134/409 (32%), Gaps = 45/409 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +    +  +PV          N + +  R   +A  + ITG+ GK+T   ++ + L
Sbjct: 78  SHPAIQHAIAAGVPVI---------NDIELLFRHSEQAAFVGITGTNGKSTVTTLVGLML 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + +  T    G+  +       L+    DV+  + EL    L  I        P +A + 
Sbjct: 129 ARLPGTTRTGGNLGD-----AALSLWQADVERYVLELSSFQLESIE----GFHPEVAALL 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  HL  ++G++    AKA IF+   +     +N DD   + ++          +  F
Sbjct: 180 NLSDDHLDRYNGLQGYLRAKARIFQRQTQRDRAVINADDPALQPVRDILGHPSAPRVVPF 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              +     +              Q     M +    I              +++     
Sbjct: 240 STQQVIKGGVYVQDGQLLDHRQMTQPAIPIMAIAEMRIQGRCNHANAAAAAAIALEAGAS 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              ++ +    P  G   R          T I++S   N  +      VL  I    EG 
Sbjct: 300 HADVRQVLRDFP--GLPHRMAWVRRMDGVTYINDSKGTNVGA------VLEAIPSFPEGV 351

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            + + G     G+  ++    L  +L  Y + H+ L G     +       + +  + +M
Sbjct: 352 -VLIAG-----GKAKKTDFSPLIPLLQKY-VRHLILIGTATEEMAAMFQAVVPLQRATSM 404

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           +      Q     G+ V++    +S             F + +  L+ +
Sbjct: 405 EDAVQIAQQVAQPGETVLLSPACASFDMFLNFEDRGRRFCQAVEALVAQ 453


>gi|126435850|ref|YP_001071541.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium sp. JLS]
 gi|126235650|gb|ABN99050.1| UDP-N-acetylmuramyl-tripeptide synthetase [Mycobacterium sp. JLS]
          Length = 508

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 79/489 (16%), Positives = 139/489 (28%), Gaps = 67/489 (13%)

Query: 7   FHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF-------- 56
              L + +Q        VP   V G+++  +   P + F A+ G    G  F        
Sbjct: 15  LGALAEQVQAVPAPGFPVPDIRVTGVTLRGQDALPGDLFAALPGSSAHGARFVADAVAAG 74

Query: 57  ----ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
               +  A   GA +               +PV    D    L  +A            +
Sbjct: 75  AVAVLTDA--AGAVM---------LGADPVVPVLVHPDPRAVLGAVASTVYGHPSQHLRV 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPV 158
           + +TG+ GKTTT  ++   L +  +    IG+    I              P   A + V
Sbjct: 124 VGVTGTSGKTTTTYLVEAGLRAAGRVAGLIGTVGIRIDGRDQPSALTTPEAPDLQALLAV 183

Query: 159 DVDFGIFE--LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            V+ G+    + +S           V       T ++  HL     +E+   AKA +F+ 
Sbjct: 184 MVEQGVDTVVMEVSSHALTLGRVDGVHFAAGGFTNLSRDHLDFHPTMEDYFDAKAGLFDP 243

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +T                    A    T+ + G+   AD++    +     +   V +
Sbjct: 244 QSRTRAELAVVCVDDDAGRAMAIRAGRAVTVSASGR--PADWRAEDVRAVEAGAQEFVAV 301

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               +                  L   ++L A   +  +A          G+       Q
Sbjct: 302 DPAGVHHGLRIALPGHYNVA-NCLLAAALLDAVDVSPEQAAPGLRTATVPGRLEAVDRGQ 360

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            F  L+D ++           +VL  +   G GR   V G     G    +   +    +
Sbjct: 361 DFLALVDYAHKPGA-----LRAVLETLRGQGTGRIAVVFGA----GGNRDAGKREPMGRV 411

Query: 397 SLYNISHVWLSGFHVLA------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           +      V ++  +                  A      V                   G
Sbjct: 412 AAELADLVVVTDDNPRDEDPATIRAAIMAGARAAGGGADVVEVGDRREAIAHAVRWARSG 471

Query: 445 DVVVV--KS 451
           DVV+V  K 
Sbjct: 472 DVVLVAGKG 480


>gi|329667558|gb|AEB93506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii DPC 6026]
          Length = 460

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 120/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IPV                A   S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKAEKLDIPVITEP----------EIALNVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++         D  + E+    L         ++P +A I
Sbjct: 136 DHNLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK +I +  ++      N+D      +  K        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLKITQSQDQDDYFIANFDQKN---ILEKELDKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHHIMKISDIKIPGIHNQQNCLVAIAISKLMGA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DNSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +    ++  + L G     L DA  ++    +  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|313143839|ref|ZP_07806032.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
 gi|313128870|gb|EFR46487.1| d-alanyl-d-alanine-adding enzyme [Helicobacter cinaedi CCUG 18818]
          Length = 490

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 123/345 (35%), Gaps = 24/345 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+  II +TGS GKT+ K  LT  L    + YA   S N H G V      +    +  I
Sbjct: 161 SRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIYI 220

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +         
Sbjct: 221 TEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQSKRLKK--- 277

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     +   +            K       +R  +   E +  ++ ++ +     
Sbjct: 278 --------AFVFKDNLKPQNLDNALAKKITYFPENVRNVEANLEGTSFDLFIKNEWHRFD 329

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +   L   V+   KA+    P   R  + +         +ID+
Sbjct: 330 TMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQT----NQKLIIDD 385

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +N N   MK AI     +S   EGR+I V   + E    ++  +I+LA+ +        
Sbjct: 386 GFNGNLKGMKEAIR----LSSLYEGRKIIVTPGIVE---STKEANIELAKAIDEV-FDIA 437

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G            +      +    L   ++S     D+V+ 
Sbjct: 438 IITGELNARTLADNIHNTQKIIIKDKSMLEDMLKSCSQPHDLVLF 482


>gi|228970145|ref|NP_273471.2| UDP-N-acetylmuramate--L-alanine ligase [Neisseria meningitidis
           MC58]
 gi|325199611|gb|ADY95066.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 468

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 63  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 114 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 171 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 226 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++               VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 342 PVEMAATLAAARGAYLEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 397

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 398 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 447


>gi|254459232|ref|ZP_05072654.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
 gi|207084125|gb|EDZ61415.1| D-alanyl-D-alanine-adding enzyme [Campylobacterales bacterium GD 1]
          Length = 481

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 127/344 (36%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
              I+AITGS GKT+ K  +T  LS+  + Y+   S N   G+   +   +P D +  I 
Sbjct: 159 DMQIVAITGSYGKTSIKNFVTEILSTKYRVYSTPRSVNTIGGIMRDINESLPSDTEIYIC 218

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P I V+  +  AHL  F  ++ I + K EI +          
Sbjct: 219 EAGARESGDIYEITTFLEPQIVVVGKVGEAHLEYFKSLKNIIATKLEIMQSPRLM----- 273

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       K+      T     K       ++      + +  E++L    + +  
Sbjct: 274 ------------KAFIHSSVTDEPHDKVTFFGDNIQNMDATIDGTNFELKLGSDILTLHT 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G     N+   + +            KA++   P E R ++           ++D+ 
Sbjct: 322 NILGSFQTMNIEAAVNVAKSFGMSNSEITKAVAKLTPVEHRLQKIVAGGK----IILDDG 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN N   M   I + S      EGR++ V   + E    S   ++ L + ++      V 
Sbjct: 378 YNGNIDGMLEGIRLCSLH----EGRKVIVTPGLVE---SSDELNLKLIDAINEV-FDIVI 429

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G     L +   +  +         +   + S    GD+++ 
Sbjct: 430 VTGALNATLFEKNIKVTNKTILHDKSKIQDVLASQTKAGDIILF 473


>gi|218532977|ref|YP_002423793.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
 gi|218525280|gb|ACK85865.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           chloromethanicum CM4]
          Length = 492

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 132/452 (29%), Gaps = 40/452 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V G++ DSR + P   F A+ G   DG  F        A                 +P 
Sbjct: 26  PVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAA-----AAAAGAVAVAGEGTRPEDLPE 80

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G
Sbjct: 81  ATAWIEVADARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRDSASLG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIA 187
           +             +       + E              +  S  G  +     V    A
Sbjct: 141 TVGIVTNRGAQYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTAA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     IE+   AK  +F  L   G   +   D  +              I
Sbjct: 201 AFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAI 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G+  +   +L +         + +   GK   V    +G    +N L+  G+     
Sbjct: 261 RTTGRGGDF-IRLVEAGTEGFAQSLTLSHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         +      G   R            + + Y   P +++  +S    + P  
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD-YAHKPEALEHVLSA---LRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            GR + V G     G    +    +   ++      V ++  +             L  +
Sbjct: 376 SGRLVVVFG----CGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRTGVRDLRAGDVLVVAGKG 463


>gi|257062775|ref|YP_003142447.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
 gi|256790428|gb|ACV21098.1| UDP-N-acetylmuramyl-tripeptide synthetase [Slackia
           heliotrinireducens DSM 20476]
          Length = 493

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 78/489 (15%), Positives = 131/489 (26%), Gaps = 85/489 (17%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL--- 67
            QA          +  V G++IDSR   P   F                   KGA     
Sbjct: 9   AQATG--------EATVQGMTIDSRKAEPGCLFVC-----------------KGAAFKPQ 43

Query: 68  --------------VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--II 111
                              +   +      P    DDV  A+  LA     R      ++
Sbjct: 44  YLGGALDAGAAAYLCDAAAEATLAQAYPQAPHIVTDDVRRAMALLAAVVFDRPDLKIDVV 103

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV------------PLTLARMPVD 159
            ITG+ GK+TT  M+   L +  +  + +GS +   GV            P     +   
Sbjct: 104 GITGTKGKSTTAYMMRSILIAAGQEPSILGSIDTDDGVEHFESHNTTPEAPDLWRHLANT 163

Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFE 215
           V+ G   + M  S  G     T  VR  I     I   H+S       E+   +K ++F 
Sbjct: 164 VEAGRSRMVMEVSSHGLKYDRTLGVRFAIGCFLNIGRDHISPVEHPTFEDYFESKLKLFA 223

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                     +            S  L    +       +AD+         +     V 
Sbjct: 224 QSRTALVNLNSDMADQVLEAAKASEQLVTFGVGR----DDADWNAADLAVEPQGIAFTVC 279

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 E +  G+         +   ++S +       I+A        GR        +
Sbjct: 280 TPTGERERIVLGMAGLFNVENALAAVVMSRMLGVTWDDIRAGLAHVRVPGR---MEVVRS 336

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                +    Y  N  S K   S + +  P  +     V+      G  +Q   + L  V
Sbjct: 337 ADGSVVALVDYAHNELSFKTFFSSVKEEYPGRK-----VIAVFGAPGNKAQERRVTLPRV 391

Query: 396 LSLYNISHVWL--------SGFHVLALKDALPRSIHVHYSETMDGLFLFIQS---SLVDG 444
            + +    ++                +  + P           +              +G
Sbjct: 392 AAGFADHMIFTEEDPAYERVEDICAEMMASTPAGASAEVICDREAACKRAFDMAFEAENG 451

Query: 445 DVV--VVKS 451
            VV  + K 
Sbjct: 452 AVVALLAKG 460


>gi|229822993|ref|ZP_04449063.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
 gi|229787806|gb|EEP23920.1| hypothetical protein GCWU000282_00286 [Catonella morbi ATCC 51271]
          Length = 463

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 121/388 (31%), Gaps = 47/388 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +   I+A+TGS GKTTT   +      +            +IGVP  +   
Sbjct: 105 ELASWI---APCPIVAVTGSNGKTTTTSWIHQM---LAHRPQGQARLAGNIGVPSLVTAN 158

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E+    L          RP IAV+T +  AHL      E   +AK ++  
Sbjct: 159 QASPDDVIVMEVSSFQLMGTEKF----RPSIAVMTNLTSAHLDYHGSQEGYEAAKFKLVA 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                     N  D        +  A  +   +       A  +++      +   +  +
Sbjct: 215 NQTAADFWVYNVTDPTLRAHANQVKAQQVPFSH-----LPASPEVQAQGAYRQGDALYFR 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +  +        G H  QN L  + +  +L          LS +        R +    
Sbjct: 270 GEEVAKVSQIGVPGDHNVQNALAAIAVAKLLGVSNQAIQAELSAYAG---MPHRLQPIAK 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S + N  +   A+   +Q   +  G            G    +   DL   
Sbjct: 327 SAGRIFYNDSKSTNMVAATTALKSFTQPIRYIGG------------GLDRGNEFDDLIPH 374

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           L   ++   +L G     +  A  ++    +H  E +D   L    +   G+VV+     
Sbjct: 375 L--EHVVEAFLYGESKEKMARAFQQAGVPAIHLYENLDQASLAAYEAAQAGEVVLFSPSC 432

Query: 451 SS---------NSCGFYRLINLLLEEFP 469
           +S             F  LI   L E P
Sbjct: 433 ASWDQFANFEVRGQHFVDLIQSYLAEKP 460


>gi|195977729|ref|YP_002122973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|226722945|sp|B4U1U3|MURD_STREM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|195974434|gb|ACG61960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 452

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 119/346 (34%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++             +IG P +   +     D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLNA----GNQSALLAGNIGFPASEVAQAATAKDILV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L          +PHIAVIT + P HL      E+  +AK  I   +     + 
Sbjct: 166 MELSSFQLLGTE----QFQPHIAVITNLVPTHLDYHGSFEDYIAAKWRIQHRMTDKDYLV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D    + L  K+ A  +     F   +  D             ++  + +       
Sbjct: 222 LNADQELVKSLAQKTKASPV----FFSTKEKVDG------AYLADGYLYFKEEQVMSAAE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         K LS F   + R    +        T  ++
Sbjct: 272 LGLPGRHNIENALATIAVAKLRGISNQVISKTLSHFSGVKHRL---QLVGTLNQVTFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     R I + G     G    +   +L   L    +  +
Sbjct: 329 SKSTNILAC------QKALSGFDNSRVILIAG-----GLDRGNEFDELVPDLV--GLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            L G     +K A  ++   +  ++ +             GD++++
Sbjct: 376 ILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKPGDIILL 421


>gi|316984933|gb|EFV63889.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis
           H44/76]
          Length = 506

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++               VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLAAARGAYLEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 436 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485


>gi|269101761|ref|ZP_06154458.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161659|gb|EEZ40155.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 472

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/435 (19%), Positives = 150/435 (34%), Gaps = 51/435 (11%)

Query: 31  SIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL-SIPVF 86
             D R      + FF        GH     A     GA +VVV+T +      L +    
Sbjct: 45  VTD-RLSGKGAQIFF--------GH-----AASNVEGASVVVVSTAISQENPELVAAREL 90

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            +  V  A   LA   R R     IAI G+ GKTTT  ++T   S        +      
Sbjct: 91  RIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEE 205
                       +   G     ++   E       ++P + V+T I   H+  +    E 
Sbjct: 147 --------SAGTNARLGCSRYLIAEADESDASFLHLQPMVCVVTNIEADHMDTYGGDFEV 198

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     +    L   G   +  DD     L  +        + ++G S++AD +L  ++Q
Sbjct: 199 LKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRP----MLTYGFSEDADVRLMDYQQ 254

Query: 266 C-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
           C  +  +  V+     ++V  +  G H A N    + + +    D D  I+AL+ F    
Sbjct: 255 CGQQGFFTIVRKDKPELKVTLNVPGRHNALNATAAVAVATEEGVDDDAIIRALAEFQGTG 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R              ++ + Y  +P+ +   I       P        V+         
Sbjct: 315 RRFDHLGEFETGNGTAMLVDDYGHHPSEVDVTIQAARAGWPDK----RLVMVFQPHRYSR 370

Query: 385 SQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--ALPRSIHVH------YSETMDGL 433
           ++  + D A VL   ++     V+ +G   +A  D  AL R+I         +    + L
Sbjct: 371 TRDLYDDFANVLEQVDVLLMLDVYAAGEAPIAGADGRALCRTIRGRGKLDPIFVANKEAL 430

Query: 434 FLFIQSSLVDGDVVV 448
              + + + + D+V+
Sbjct: 431 PAALANIIQNDDLVL 445


>gi|295399713|ref|ZP_06809694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978116|gb|EFG53713.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 451

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 121/383 (31%), Gaps = 37/383 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V    +     +          +    +LA      S+A  I ITGS GKTTT  ++  
Sbjct: 76  IVKNPGIPYTNPIVKKAIEKHLPVITEVELAYHI---SEAPFIGITGSNGKTTTTTLIYE 132

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L              N       +A+     ++ + EL    L          RPHI+V
Sbjct: 133 MLRE---GEKRPLLAGNIGVAACEVAQKAEANNWLVTELSSFQL----AGIRDFRPHISV 185

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  I  AHL      E  A AKA IF+         +N DD     L   S A  +    
Sbjct: 186 LLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVVNADDELVMRLAENSCAQKVIFSA 245

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +         +        +  W+    +           G H  +N+L  + +  +   
Sbjct: 246 T---------KKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGKHNLENILAAVAVAKLTGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     K L+ F   + R    +           ++S   N  + + A+S         E
Sbjct: 297 DNKAIAKVLTTFTGVKHRL---QYIATIDGRKFFNDSKATNILATQRALSAF-------E 346

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
              + +L      G    +    L   L  +N+  + L G     +     ++    + Y
Sbjct: 347 KDSVILLAG----GLDRGNEFDALLPYL--HNVKAIILFGQTAAKIARVAKQAGIETIEY 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            + ++            GDV+++
Sbjct: 401 VDNVEKAVPVAYQLSEPGDVILL 423


>gi|268319706|ref|YP_003293362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
 gi|262398081|emb|CAX67095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           johnsonii FI9785]
          Length = 460

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 121/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L IPV                A   S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKAEKLDIPVITEP----------EIALNVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++         D  + E+    L         ++P +A I
Sbjct: 136 DHHLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  K        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQKN---ILEKELDKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  +++A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHHIMKISDIKIPGIHNQQNCLVAIAISKLMSA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +    ++  + L G     L DA  ++   ++  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKNIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GD+++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDIILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|148651952|ref|YP_001279045.1| UDP-N-acetylmuramyl-tripeptide synthetase [Psychrobacter sp.
           PRwf-1]
 gi|148571036|gb|ABQ93095.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Psychrobacter sp. PRwf-1]
          Length = 569

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/505 (13%), Positives = 142/505 (28%), Gaps = 85/505 (16%)

Query: 24  QGFVNGISIDSRSIAPQEA------FFAIKG------PHYDGHDFILHAVQKGAGLVVVN 71
               +   +DSR +A ++A      F  +K              ++  A+ + A  ++  
Sbjct: 38  DVPFSKFVLDSRQLAKRDASSAPAAFVLLKSQTQPLQKSQ---QYVQTALPQ-AAFIISE 93

Query: 72  TDM---------VASIGSLSIPVFGVDDVLG--------------ALNKLA-VAARLRSK 107
            D            S  S   P+  V D+                AL+++    +  ++ 
Sbjct: 94  IDPQQLGLEGLDKPSDSSPDCPILFVPDIRDVLGTLIQLSLLSDDALSQIGDAQSLAQTL 153

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG---- 163
             +IA+TG+ GKTT  +++       +       +     G     + +      G    
Sbjct: 154 PQVIAVTGTNGKTTISQLMAQLCQFSEVAQLQNSAVMGTAGNGRLDSLVQASHTTGDALA 213

Query: 164 --------------IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA-- 207
                         +  L  S  G  +     V   +A+ T ++  HL     +++ A  
Sbjct: 214 VQGFLRKMGDEGVDLLALEASSHGLDQQRLQGVPVTVALYTNLSRDHLDYHPDMQDYAQA 273

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            A+        +     +N DD F  L+   +   G+       +    +    +     
Sbjct: 274 KARLFDKAYFPQLTHAVINADDEFAPLMIETAQNSGVSVWLYSLQGDFIEKSDLQRNAYF 333

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
               +E  L G  +E         +   +L    + ++L A        +          
Sbjct: 334 IAKTIEPSLDGVKIEAATSFGPLTLHSPLLGRFNVANLLAAVAGAIALGIEPESIPALVK 393

Query: 328 KRYRCALNQGFFTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           + +  +      +L ++               +  A   VL+ +  H  G   A+ G   
Sbjct: 394 QLHGASGRMQRVSLDEQGSQPEQGVFIVDYAHTPDALTQVLTSLKSHCSGNLWAIFG--- 450

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVH--YSE 428
             G         L     L     V L+  +            ++  +    H       
Sbjct: 451 -CGGDRDKGKRPLMAQAGLATADKVVLTSDNPRSEDPQMILQDMQQGMSDEQHAKTTVIA 509

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +        D+VV+  K 
Sbjct: 510 DRKQAIEYAVEHAAADDIVVIAGKG 534


>gi|313200239|ref|YP_004038897.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase [Methylovorus sp.
           MP688]
 gi|312439555|gb|ADQ83661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           MP688]
          Length = 460

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/388 (18%), Positives = 129/388 (33%), Gaps = 46/388 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +   ++  ++ +    +  V DV     +L    R RS   +IAITG+ GKTT   ++
Sbjct: 78  VALAEPEVQQALANG---IQVVGDV-----ELFAQFRPRSS-KVIAITGANGKTTVTTLV 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLV 182
                +             +IG+P+  A   V+ D      + EL    L      T  +
Sbjct: 129 GEMCKAAGL----KTVVAGNIGLPVLDALRQVETDGAPDVYVLELSSFQL----ETTSSL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  A +  +   H+  + G+ E A+AKA I +G         +           ++ AL
Sbjct: 181 APDAAAVLNVTEDHMDRYPGMPEYAAAKARILKGAGVQVLNREDAWC--------RNMAL 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + +FG     +          +Q W+                G H A N L  L +
Sbjct: 233 PDQPVVTFGLDLPVESHAYGLLALHDQLWLAQGAHPILHVEELRIPGLHNAANALAALAL 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D       L  F     R        +       D+S   N  +  AA+     
Sbjct: 293 CRAIGVDWAPLQHVLREFKGLPHRV---EWVADLHDIAFYDDSKGTNVGATCAAL----- 344

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                  + + + G   +  + S              N   V L G     ++ AL  S 
Sbjct: 345 --AGLPRKVVLIAGGDGKGQDFSP------LREPVDQNARAVVLIGRDAALIEAALQGSP 396

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   ++ +++       ++   GD V++
Sbjct: 397 VPRLHAASLEEAVQQAYAAATPGDAVLL 424


>gi|25008816|sp|Q9K0Y1|MURC_NEIMB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|7225646|gb|AAF40861.1| UDP-N-acetylmuramate--alanine ligase [Neisseria meningitidis MC58]
 gi|325140938|gb|EGC63445.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           CU385]
 gi|325205492|gb|ADZ00945.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M04-240196]
          Length = 469

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 172 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFIDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A ++               VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLAAARGAYLEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 448


>gi|315606651|ref|ZP_07881662.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
 gi|315251661|gb|EFU31639.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           buccae ATCC 33574]
          Length = 443

 Score = 72.2 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 125/382 (32%), Gaps = 46/382 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + + ++ ITGS GKTTT  ++     +             +IG  L L   
Sbjct: 94  EFAARY---THSKMVCITGSNGKTTTTSLIYHIFKAAGYD----AGLAGNIGKSLALQVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
               ++ I EL    L       +  R +IA++  I P HL  +   ++    AK  I +
Sbjct: 147 EDPHEYYIIELSSFQLD----NMYDFRANIAILLNITPDHLDRYDNCMQNYVDAKMRILQ 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                 +     DD   +    K     +K  +S  K K +   + + +   E+      
Sbjct: 203 NQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEEGEYKIEK-----P 257

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 +      G H   N L      +I     +   K+L  F   E R ++      
Sbjct: 258 TPFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVEHRLEKVCKVGG 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  +       +   I +LG     G+   + +  + E+
Sbjct: 318 VQ---YINDSKATNVDACWYALESM-------KNPTILILG-----GKDKGNDYNQIKEL 362

Query: 396 LSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           +    +  V+L G     L D      I V  + +M             GD V++    +
Sbjct: 363 VKKKCVGLVYL-GADNKKLHDNFDALGIPVRDTHSMKDCVAACYEMARPGDTVLLSPCCA 421

Query: 452 S---------NSCGFYRLINLL 464
           S             F  L+  L
Sbjct: 422 SFDLFKNMEDRGNQFKTLVRNL 443


>gi|224437375|ref|ZP_03658347.1| hypothetical protein HcinC1_05382 [Helicobacter cinaedi CCUG 18818]
          Length = 492

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 123/345 (35%), Gaps = 24/345 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGI 164
           S+  II +TGS GKT+ K  LT  L    + YA   S N H G V      +    +  I
Sbjct: 163 SRLIIIGVTGSYGKTSMKNFLTQILKEKYRVYATPRSVNTHTGIVADINNNLDYTTEIYI 222

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I  ++  + PH AVI  +   HL  F  +E I   K E+ +         
Sbjct: 223 TEAGARLKGDIALISEFINPHYAVIGEVGEQHLEYFKSLENIVETKFELLQSKRLKK--- 279

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                     +   +            K       +R  +   E +  ++ ++ +     
Sbjct: 280 --------AFVFKDNLKPQNLDNALAKKITYFPENVRNVEANLEGTSFDLFIKNEWHRFD 331

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+   + +   L   V+   KA+    P   R  + +         +ID+
Sbjct: 332 TMVLGQFNVVNLSAAIYMGVELGLRVEEIQKAVKRIEPIPHRLNKIQT----NQKLIIDD 387

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +N N   MK AI     +S   EGR+I V   + E    ++  +I+LA+ +        
Sbjct: 388 GFNGNLKGMKEAIR----LSSLYEGRKIIVTPGIVE---STKEANIELAKAIDEV-FDIA 439

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G            +      +    L   ++S     D+V+ 
Sbjct: 440 IITGELNARTLADNIHNTQKIIIKDKSMLEDMLKSCSQPHDLVLF 484


>gi|293384988|ref|ZP_06630822.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|293389258|ref|ZP_06633720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|312905977|ref|ZP_07764990.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|312909323|ref|ZP_07768179.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
 gi|291077666|gb|EFE15030.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis R712]
 gi|291081422|gb|EFE18385.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis S613]
 gi|310627972|gb|EFQ11255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 512]
 gi|311290347|gb|EFQ68903.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           DAPTO 516]
          Length = 513

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  +  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
           S          V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  SAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +G  I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGCLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|256959800|ref|ZP_05563971.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
 gi|256950296|gb|EEU66928.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Merz96]
          Length = 508

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  +  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREITALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
           S          V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  SAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +G  I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGCLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|288925518|ref|ZP_06419451.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
 gi|288337734|gb|EFC76087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccae D17]
          Length = 443

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/382 (18%), Positives = 125/382 (32%), Gaps = 46/382 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + + ++ ITGS GKTTT  ++     +             +IG  L L   
Sbjct: 94  EFAARY---THSKMVCITGSNGKTTTTSLIYHIFKAAGYD----AGLAGNIGKSLALQVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
               ++ I EL    L       +  R +IA++  I P HL  +   ++    AK  I +
Sbjct: 147 EDPHEYYIIELSSFQLD----NMYDFRANIAILLNITPDHLDRYDNCMQNYVDAKMRILQ 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                 +     DD   +    K     +K  +S  K K +   + + +   E+      
Sbjct: 203 NQTADDSFIFWNDDPIIKRELEKYDIKAVKCPFSELKEKGSIGYIEEGEYKIEK-----P 257

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 +      G H   N L      +I     +   K+L  F   E R ++      
Sbjct: 258 TPFNMEQEELSLTGKHNIYNSLAAGIATNIAGIKKEVIRKSLGDFPGVEHRLEKVCKVGG 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  +       +   I +LG     G+   + +  + E+
Sbjct: 318 VQ---YINDSKATNVDACWYALESM-------KNPTILILG-----GKDKGNDYNQIKEL 362

Query: 396 LSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           +    +  V+L G     L D      I V  + +M             GD V++    +
Sbjct: 363 VKKKCVGLVYL-GADNKKLHDNFDALGIPVRDTHSMKDCVAACYEMARPGDTVLLSPCCA 421

Query: 452 S---------NSCGFYRLINLL 464
           S             F  L+  L
Sbjct: 422 SFDLFKNMEDRGNQFKTLVRNL 443


>gi|241760232|ref|ZP_04758328.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
 gi|241319343|gb|EER55808.1| UDP-N-acetylmuramate--alanine ligase [Neisseria flavescens SK114]
          Length = 469

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 91/428 (21%), Positives = 150/428 (35%), Gaps = 51/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 64  NGADVVVTSTAVKKDNPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S      
Sbjct: 115 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADES-----D 166

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 167 ASFLYLTPIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 226

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-----HHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E        +  G 
Sbjct: 227 LPKVSKP----YATYGLDDTADIYATDIENIGAQMKFTVHVQMKGHEQEPFEVVLNMPGR 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 283 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S      P        VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 343 PVEMAATLSAARGAYPEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 398

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           +G   +A  D  AL R+I V       Y E +  L   + + L DGDVV+   + S    
Sbjct: 399 AGEEPIAAADSRALARAIRVLGKLEPIYCENVVDLPQMLLNVLQDGDVVLNMGAGSI--N 456

Query: 459 RLINLLLE 466
           R+ + L+E
Sbjct: 457 RVPSALVE 464


>gi|288817395|ref|YP_003431742.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288786794|dbj|BAI68541.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308751002|gb|ADO44485.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hydrogenobacter
           thermophilus TK-6]
          Length = 422

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/380 (13%), Positives = 113/380 (29%), Gaps = 52/380 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       K  ++AITG+ GK+T   M  + L               + G   +   +
Sbjct: 76  ELAYRF---FKGRVVAITGTDGKSTVTRMTYLILREHFGNV----LEGGNTGTAFSEIVL 128

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+               RP        A  HL     +E+   +K  IF+ 
Sbjct: 129 RDPFSLAVLEVSSFQ----GKTLKTFRPCCGAFLNFARDHLDWHISLEDYLHSKYNIFKH 184

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            ++   + L                     + +  ++K   F  +       +       
Sbjct: 185 QQEEDFVVLYSRQEEV--------------VNTPTRAKKYFFSSKDAHGFLREGRAYFMG 230

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G+H  +N L +  I  ++    +T  K L  F     R          
Sbjct: 231 EELFEVSKLKIYGHHNYRNALASAMIAKLMGVPSETIRKVLYEFSGLPFRL---ELLGEW 287

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               + ++S      ++++A      +    +   I + G   + G+  +S +  + +  
Sbjct: 288 EGVKVFNDSKATTVNALESA------LKSMPDKSVILIAGGRDKGGDF-ESLYDLILQ-- 338

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
               +    L G     +  A   +  +   E+++      ++    GD+++     +S 
Sbjct: 339 ---KVRLALLIGEAKDKIFQAWRGATILEKVESLEEALKVAKAYSQRGDIILFSPACASF 395

Query: 453 --------NSCGFYRLINLL 464
                       F  L+  L
Sbjct: 396 DMFKDYIERGQRFNELVYSL 415


>gi|260584179|ref|ZP_05851927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
 gi|260158805|gb|EEW93873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           elegans ATCC 700633]
          Length = 453

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/379 (17%), Positives = 121/379 (31%), Gaps = 43/379 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A    +  II ITGS GKTTT  + ++ L           + N  I +     +   +
Sbjct: 104 EIAYHLLEGLIIGITGSNGKTTTTTLSSLMLKESFPERDVYAAGNIGIPLSQLAEQSTKE 163

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  I       +P IA I  I  AHL      EE   AK ++ +   +
Sbjct: 164 -DIYVSELSSFQLMGID----QFKPKIACIVNIFSAHLDYHGSREEYIKAKLQLTKNQTE 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  N D      L  +     +                 ++    E  ++    +  
Sbjct: 219 DDYLVYNADYPELITLIEEHTNATLVPFSR--------KNSLEFGASVEGDYICFNGEKV 270

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G    +N+L  + I  +  A  +   KA+  FH  + R    +        
Sbjct: 271 IPVSTIQVPGTQNVENVLAAVAIAKLAGATNEGIKKAVQNFHGVKHRT---QFVKEVNKR 327

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A+   +  S       I + G     G    +   +L   L   
Sbjct: 328 RFYNDSKATNIIATQTALRSFTNQSV------ILIAG-----GLDRGNGFDELIPDL--T 374

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            +S + L G     L++A   +    +    T++           + D++++    +S  
Sbjct: 375 AVSGIVLYGETKEKLQEAAKVAGIPVIEVVNTLEEATKKAYEISKENDIILLSPACASWD 434

Query: 453 -------NSCGFYRLINLL 464
                      F R++  L
Sbjct: 435 QFKNFEIRGDEFIRIVENL 453


>gi|261379336|ref|ZP_05983909.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
 gi|284797775|gb|EFC53122.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           subflava NJ9703]
          Length = 445

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 GIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DMWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDAFCRAMKRAGREVKWFSLEHKADFWLERETGCLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAIALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMIDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|15615130|ref|NP_243433.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           halodurans C-125]
 gi|30316130|sp|Q9K9S8|MURD_BACHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|10175187|dbj|BAB06286.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus halodurans
           C-125]
          Length = 450

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 82/434 (18%), Positives = 141/434 (32%), Gaps = 76/434 (17%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
            G  YD +  +  A+++G   VV   ++ + +                           S
Sbjct: 79  PGIRYD-NPIVEEAIKRGIS-VVTEVELASKV---------------------------S 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A I+AITGS GKTTT  ++   +  +K +        N   V   +AR     D  + E
Sbjct: 110 EAEIVAITGSNGKTTTTSLV---VEMLKGSAREPKVAGNIGVVASDVAREATADDVIVME 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP +A++  I  AHL      E   +AK +I E +++      N
Sbjct: 167 VSSFQLMGTSHF----RPKVAILLNIFDAHLDYHGSKENYVAAKKKIVENMKEEDYFVYN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     + A++ A  I    S          + K     +      + +    +    
Sbjct: 223 ADDPLVSKVAAETKATPIPFSRS---------TVVKSGAYVDGETYMFRGEKIVEKGDVV 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L  +    ++ A  +     LS F   E R    +           ++S 
Sbjct: 274 LPGDHNVDNVLAAMSAALLMGATKEQIHHVLSTFSGVEHRL---QFVGTAFERKWYNDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S  AAI   +          I +L    + G            + +L  +  V L
Sbjct: 331 ATNILSTTAAIQSFTD--------PIVLLAGGLDRGNSFDDL------IPALQKVKAVVL 376

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     L  A   +    +  +E ++           +GDV+++    +S         
Sbjct: 377 FGETKHKLAQAAMEAGVETIVEAERVEDAVRKALDVSANGDVILLSPACASWDQYRTFEE 436

Query: 453 NSCGFYRLINLLLE 466
               F   I  L E
Sbjct: 437 RGEAFVTSIEGLQE 450


>gi|227877322|ref|ZP_03995395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256848742|ref|ZP_05554176.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|262045850|ref|ZP_06018814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|293381718|ref|ZP_06627699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|312977598|ref|ZP_07789345.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
 gi|227863178|gb|EEJ70624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           crispatus JV-V01]
 gi|256714281|gb|EEU29268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-1A-US]
 gi|260573809|gb|EEX30365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus MV-3A-US]
 gi|290921765|gb|EFD98786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus 214-1]
 gi|310895337|gb|EFQ44404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           crispatus CTV-05]
          Length = 459

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 121/413 (29%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVQKAEELNIPII--TEPEVALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQKD---ILAKEKEVSPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ +        +    Q+   +             I      N+  +L  ++I   
Sbjct: 249 TFSETDHNADYFIGDEYLESQNEKIM---------KISDIKLPGIHNLQNSLVAIAISKI 299

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                    +V     G   R +         + ++S + N  +   AI    Q      
Sbjct: 300 MGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEVLIA 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 360 G------------GLDRGFTFDDLVPLFKK-HVKSIVLYGETRYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+          +  GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAWELVEPGDVLLFSPACASWDQFRTFEERGDYFVRFVEELKTK 459


>gi|296537029|ref|ZP_06899022.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Roseomonas cervicalis ATCC 49957]
 gi|296262645|gb|EFH09277.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
          [Roseomonas cervicalis ATCC 49957]
          Length = 57

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 1  MN-PLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
          M+ PLWT  +L QA  G          +  + IDSR+  P E F A++    DGHDF+  
Sbjct: 1  MSAPLWTSAELRQATGG---SCPEGLEIRSVGIDSRATGPGELFVALRDAR-DGHDFVAD 56

Query: 60 A 60
          A
Sbjct: 57 A 57


>gi|227889755|ref|ZP_04007560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
 gi|227849619|gb|EEJ59705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           johnsonii ATCC 33200]
          Length = 460

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 120/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IPV                A   S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKAEKLNIPVITEP----------EIALNVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++         D  + E+    L         ++P +A I
Sbjct: 136 DHHLSKNGGHAYAVGNIGVPISEVVEKATSKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  K        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQDDYFIANFDQKN---ILEKELDKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHHIMKISDIKIPGIHNQQNCLVAIAISKLMGA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +    ++  + L G     L DA  ++    +  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|262376991|ref|ZP_06070217.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
 gi|262308029|gb|EEY89166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           lwoffii SH145]
          Length = 448

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 120/347 (34%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +  +   K  A       ++G P        D + 
Sbjct: 100 RRATDKPIVAITGSNAKSTVTTLIGLMAADAGKKVAIG----GNLGRPALDL-TKDDPEL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L     L       +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 YILELSSFQLETTSNLAA----EVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGVKKVVY 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     +    +     +  I SFG +     Q    K      W+    +     
Sbjct: 211 NR--------DDSLTRPLVPDVTPIQSFGLNAPDMNQYGILKDTDGSIWLARGRERLLKS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ +  L  F   E R                
Sbjct: 263 TEMYMQGTHNVANALACLALGEAIGLPLESMLNTLKTFKGLEHRC---EFVKEVQGVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AA+  L        G+   +LG   + G+  ++    L++   +    
Sbjct: 320 NDSKGTNIGATLAALDGLGMAIEAQGGKVAIILGGQGK-GQDFKALRESLSKYAKVA--- 375

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L G     ++ A+  +I + +++++       Q      DVV++
Sbjct: 376 --VLIGEDRPVIEAAIAGTIELIHADSLQQAVEICQKHTQAHDVVLL 420


>gi|119026103|ref|YP_909948.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
 gi|118765687|dbj|BAF39866.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium adolescentis ATCC 15703]
          Length = 517

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 129/430 (30%), Gaps = 38/430 (8%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + I+G    + P          + I+ D+R + P   F   KG  +   +++    ++
Sbjct: 18  LREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFKA-EYLQGIDER 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           G    V   D   +      P   VDDV  A+  L+     R + +  ++ ITG+ GKTT
Sbjct: 75  GLAAYVSENDFSDA---TQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGTKGKTT 131

Query: 122 TKEMLTIALSSI-----------KKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFE-- 166
           T  +    L+                        + +  P  +   RM  +      E  
Sbjct: 132 TAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYL 191

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
            + +S           +   +A    I+P H+S       E+    K +I +        
Sbjct: 192 VMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCRALVLG 251

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                        A+  ++ + T    G S             S  S +        + +
Sbjct: 252 ADCARADLIRQ-DARHTSVPVTTFALGGDSMADVMAAPANDDHSRFSIVIDGTSIGELSL 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              G   +      + +   +        A  AL    P    G+       +     I 
Sbjct: 311 TLDGDFNYANAAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIV 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N AS+ A +  + Q     +     + G     G  +     ++    +   I H
Sbjct: 371 D-YAHNYASVTALLDYVDQRYGSEKPEITLITGSA---GNKAYDRRAEIV-HAAQDRIDH 425

Query: 404 VWLSGFHVLA 413
           + L+      
Sbjct: 426 LVLTFEDTDD 435


>gi|325102886|ref|YP_004272540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
 gi|324971734|gb|ADY50718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter saltans
           DSM 12145]
          Length = 448

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 111/384 (28%), Gaps = 42/384 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L+++  A R   KA  I ITGS GKTTT  +    L               +IG      
Sbjct: 93  LSEIEFAGRYN-KAKTICITGSNGKTTTTLLTYHILKKAGLNV----GLAGNIGYSFAKQ 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
               + D+ + EL    L       +  +  IAV+  I P HL  ++  ++    +K  I
Sbjct: 148 VAEENFDYYVLELSSFMLD----NMYDFKADIAVLLNITPDHLDRYNYEMKNYVDSKFRI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +            DD        +      +  +S          L         +  E
Sbjct: 204 IQNQTSQDHFIYCADDPETIAALDRHQINAERHPFSITNKVENGAFLENDTIYFNLNNTE 263

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                     +      + +    ++  I+ +    V  ++              R    
Sbjct: 264 PLTMTIQELALQGSHNVYNSMASGISAKILELRNETVRESMGDFK------NVAHRLEFV 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 T I++S   N  S   A+  +           + +LG + +  + S      + 
Sbjct: 318 AKISGITFINDSKATNVNSTWYALESM-------SSDVVLILGGVDKGNDYS------ML 364

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--- 449
             L    +S +   G    A+ DA    + +   +++              G  V++   
Sbjct: 365 RNLVKEKVSSIVCLGLDNKAIHDAFEDDVEIIVNTKSAAEAVEVAYHLAKKGSTVLLSPA 424

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F   +  L
Sbjct: 425 CASFDLFKNYEDRGDQFKAAVREL 448


>gi|325144962|gb|EGC67245.1| UDP-N-acetylmuramate-L-alanine ligase [Neisseria meningitidis
           M01-240013]
          Length = 506

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 86/410 (20%), Positives = 142/410 (34%), Gaps = 49/410 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV +T +      +       IPV         +  LA   R R     IAI G+
Sbjct: 101 NGADVVVTSTAVKKENPEVVAALEQQIPVI----PRALM--LAELMRFRDG---IAIAGT 151

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +     +              ++ + E   S    + 
Sbjct: 152 HGKTTTTSLTASILGAAGLDPTFVIGGKLN---AAGTNARLGKGEYIVAEADESDASFLH 208

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P ++V+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 209 LT-----PIMSVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 263

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-----VHHGIGY 290
             K          ++G    AD      +    Q    V +Q K  E      V +  G 
Sbjct: 264 LPKVSKP----YATYGLDDTADIYATDIENVGAQMKFTVHVQMKGHEQGSFEVVLNMPGR 319

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT-LIDESYNAN 349
           H   N L  +G+   + A V+   K L  F     R ++Y         T L+ + Y  +
Sbjct: 320 HNVLNALAAIGVALEVGASVEAIQKGLLGFEGVGRRFQKYGDIKLPNGGTALLVDDYGHH 379

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M A +S               VL         ++    D  +VL+  +   ++ V+ 
Sbjct: 380 PVEMAATLSAARGAYLEK----RLVLAFQPHRYTRTRDLFEDFTKVLNTVDALVLTEVYA 435

Query: 407 SGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVV 448
           +G   +A  D  AL R+I V       Y E +  L   + + L DGD+V+
Sbjct: 436 AGEEPIAAADSRALARAIRVLGKLEPIYCENVADLPEMLLNVLQDGDIVL 485


>gi|315166876|gb|EFU10893.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1341]
          Length = 516

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|307270255|ref|ZP_07551567.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
 gi|306513398|gb|EFM82018.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4248]
          Length = 511

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|257415238|ref|ZP_05592232.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           AR01/DG]
 gi|257157066|gb|EEU87026.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           ARO1/DG]
          Length = 508

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|227517630|ref|ZP_03947679.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|312900256|ref|ZP_07759568.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|227074936|gb|EEI12899.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX0104]
 gi|311292617|gb|EFQ71173.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0470]
 gi|315575296|gb|EFU87487.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309B]
 gi|315581462|gb|EFU93653.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0309A]
          Length = 513

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|116629840|ref|YP_815012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           gasseri ATCC 33323]
 gi|238853968|ref|ZP_04644325.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311110519|ref|ZP_07711916.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
 gi|122273222|sp|Q042P8|MURD_LACGA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116095422|gb|ABJ60574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           gasseri ATCC 33323]
 gi|238833413|gb|EEQ25693.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 202-4]
 gi|311065673|gb|EFQ46013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri MV-22]
          Length = 460

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 123/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IPV    +   AL          S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKALKLNIPVI--TEPEIAL--------NVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++       D D  + E+    L         ++P +A I
Sbjct: 136 DHHLSKNGGHAYAVGNIGVPISEVVEKATDKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  +        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKN---ILDRELKKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHQIMKISDIKIPGIHNQQNCLVAIAISKLMGA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +   Y +  + L G     L DA  ++    +  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKKY-VKSIVLYGETKYLLADAARKAGIKDIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|29375267|ref|NP_814420.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis V583]
 gi|257077542|ref|ZP_05571903.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294780452|ref|ZP_06745817.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
 gi|46576998|sp|Q838A4|MURE_ENTFA RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine
           ligase; AltName: Full=L-lysine-adding enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:L-Lys ligase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|29342726|gb|AAO80491.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Enterococcus faecalis V583]
 gi|256985572|gb|EEU72874.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis JH1]
 gi|294452451|gb|EFG20888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Enterococcus faecalis PC1.1]
          Length = 508

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|256842884|ref|ZP_05548372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
 gi|256614304|gb|EEU19505.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           crispatus 125-2-CHN]
          Length = 459

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 121/413 (29%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVQKAEELNIPII--TEPEVALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQKD---ILAKEKEVSPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ +        +    Q+   +             I      N+  +L  ++I   
Sbjct: 249 TFSETDHNADYFIGDEYLESQNEKIM---------KISDIKLPGIHNLQNSLVAIAISKI 299

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                    +V     G   R +         + ++S + N  +   AI    Q      
Sbjct: 300 MGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEVLIA 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 360 G------------GLDRGFTFDDLVPLFKK-HVKSIVLYGETRYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+          +  GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAWELVEPGDVLLFSPACASWDQFRTFEERGDYFVRFVEELKTK 459


>gi|312794105|ref|YP_004027028.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181245|gb|ADQ41415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 145/423 (34%), Gaps = 47/423 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             AV K   LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+ 
Sbjct: 64  DEAVDK-VQLVVVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L    +          +IG+P         +    + E+    L  I+
Sbjct: 120 GKTTTTTLVGEILKKQYEDV----VVCGNIGLPFIDTIETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L 
Sbjct: 176 YF----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                L    +  F K+K     +   ++ +     E + Q    +      G H  +N 
Sbjct: 232 ----GLAKGNVIVFSKNKCQFKNMVFVEKDTIYFTFEGKTQEIMKKDEIFIPGEHNLENA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +        + DT  + L  F   E R                ++S   N  + + A
Sbjct: 288 LAAISCTLPFGIEKDTIEQVLKTFRGVEHRI---EFVAEINGIKFYNDSKGTNTDAAEKA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +          E   I + G     G          A +++   +  V+L G     +  
Sbjct: 345 LRAF-------ESPIILIAG-----GYDKGESFEKFASLVAK-KVKKVFLLGQTKHKIAS 391

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
            L +    +     T+            +GD+V++    +S             F   +N
Sbjct: 392 ELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLSPACASWDMFENYEQRGRMFKEYVN 451

Query: 463 LLL 465
            LL
Sbjct: 452 ELL 454


>gi|282851650|ref|ZP_06261015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
 gi|282557618|gb|EFB63215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri 224-1]
          Length = 446

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 123/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IPV    +   AL          S+A  + +TGS GKTTT  +    +
Sbjct: 72  ENPMVEKALKLNIPVI--TEPEIAL--------NVSEAPYVCVTGSNGKTTTVMLTQRIM 121

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++       D D  + E+    L         ++P +A I
Sbjct: 122 DHHLSKNGGHAYAVGNIGVPISEVVEKATDKDLLVVEMSSFQLL----GVTDIKPKVAAI 177

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  +        + 
Sbjct: 178 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKN---ILDRELKKTKAKVQ 234

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 235 TFSETDKTADYFIGDEYLESK-----DDHQIMKISDIKIPGIHNQQNCLVAIAISKLMGA 289

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 290 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 346

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +   Y +  + L G     L DA  ++    +  
Sbjct: 347 G------------GLDRGFMFDSLVPLFKKY-VKSIVLYGETKYLLADAARKAGIKDIVI 393

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 394 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 446


>gi|256761439|ref|ZP_05502019.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
 gi|256682690|gb|EEU22385.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T3]
          Length = 480

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 2   TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 59

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 60  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 115

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 116 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 174 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 234 TAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 294 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 349 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 403

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 404 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 451


>gi|256617550|ref|ZP_05474396.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
 gi|256597077|gb|EEU16253.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis ATCC
           4200]
          Length = 508

 Score = 71.8 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|296140347|ref|YP_003647590.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
 gi|296028481|gb|ADG79251.1| UDP-N-acetylmuramyl-tripeptide synthetase [Tsukamurella
           paurometabola DSM 20162]
          Length = 522

 Score = 71.8 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 80/503 (15%), Positives = 145/503 (28%), Gaps = 84/503 (16%)

Query: 6   TFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH------- 54
           T  ++   + G           +   +G +I ++   P + F  + G    G        
Sbjct: 16  TLTEIAAQVPGVISVPASSDSGEVRCSGATIRAQDARPGDLFCGVPGTSTHGARFAAEAV 75

Query: 55  ---------DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-- 103
                    D        GA  V+           + +PV   DD    L   A      
Sbjct: 76  AAGAVAVLTD------SAGA-AVLAE-------AGVDVPVLLHDDPRSVLGPAAAVIYGA 121

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI---GVPL--------- 151
             +K T++ ITG+ GKTTT  ++  AL + + T   IG+    I    VP          
Sbjct: 122 PSTKMTLVGITGTSGKTTTSFLVEAALGATQATTGLIGTVGTRIAGVDVPTSLTTPEGTA 181

Query: 152 ----TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                 + +   V   + E+  S     +      R  +   T ++  HL     +E+  
Sbjct: 182 LQGLFASMVEQGVTSAVMEV--SSHALAQNRVGGTRFAVGAFTNLSQDHLDYHPTMEDYF 239

Query: 208 SAKAEIFE-----GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +AKA +F               +  DD +   +       G+    +   +  AD+    
Sbjct: 240 AAKALLFVPDESGDGPVCEQAVICVDDEWGNRMADLRRDAGLPL-VTVATTGPADWTAGA 298

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               ++ +                             L +V    A V     A+     
Sbjct: 299 VSAHADGTQRFTLTGPGGQSFSATVGLPGAYNVANAALALVVAHEAGVP-LADAVRGIGA 357

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
               G+  R    Q F  ++D ++           +V++ +     GR   V+G     G
Sbjct: 358 VAVPGRVQRIDRGQDFLAVVDYAHKPAA-----LDAVIATLRGQTAGRIAVVVGA----G 408

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL-------KDALPRSIHVHYSETM 430
                    L   ++      V ++          A+        +A+P    V      
Sbjct: 409 GDRDRGKRPLMGEVAARAAELVIVTDDNPRTEDPAAIRAAVRAGAEAVPGGGEVREIGDR 468

Query: 431 DGLFLFIQSSLVDGDVVVV--KS 451
                        GDVV++  K 
Sbjct: 469 RAAITEAVDWARTGDVVLIAGKG 491


>gi|315144496|gb|EFT88512.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2141]
          Length = 511

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|300862275|ref|ZP_07108355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
 gi|300848800|gb|EFK76557.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TUSoD Ef11]
          Length = 506

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSDDSLRFIVASPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|227893335|ref|ZP_04011140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
 gi|227864750|gb|EEJ72171.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           ultunensis DSM 16047]
          Length = 459

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 124/413 (30%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S+A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVKKAEELNIPII--TEPEIALSC--------SEAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    I 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQTSDDYFIANYDQKD---ILAKEKKVSPAKIQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F +                  ++E Q +           G H  QN ++ + I  I+ A
Sbjct: 249 TFSE------TDHNADYFIGDEYLESQNEKIMKIADIKLPGIHNLQNSMVAIAISKIMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D     LS F   + R            +    +       S    I   +   P  +
Sbjct: 303 DNDDIAAVLSTFAGAKHR----------LQYVTTLDGRKVYNDSKSTNIEAATVAIPAFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 353 EPEVLIAG-----GLDRGFTFDDLVPLFKK-HVKAIVLYGETKYLLADAARKAGIKEIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAYELTQPGDVLLFSPACASWDQFRTFEERGDYFVRFVKELKTK 459


>gi|302389517|ref|YP_003825338.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
 gi|302200145|gb|ADL07715.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosediminibacter oceani
           DSM 16646]
          Length = 461

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 148/413 (35%), Gaps = 50/413 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  +GA LVVV++ +  +           IPV    D+L  L           
Sbjct: 56  GHD---AANIRGADLVVVSSAIPPTNPEYVEAIKNDIPVIHRADMLSTLMA--------- 103

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA++G+ GKTTT  M+++ L     +   +     +    +         ++ + E
Sbjct: 104 TRKGIAVSGAHGKTTTTSMISLVLEKGGMSPTVVIGGELND---IGGNATLGKGEYMVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P+IAV+T I   H+ ++  +E +  A  +    L+K G   L 
Sbjct: 161 ADES-----DGSFLKLTPYIAVVTNIENDHMDHYKDMESMKEAYRKFIMNLKKDGFALLG 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            D+     +  +         +++G +  AD+  +       +  +       +  E+  
Sbjct: 216 TDNEHVRDVMKRVDVP----YFTYGINYPADYMPKNIHIEGVDSRFEVYYRNERLGELEL 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H  G H   N    + +   L   ++    AL  F   + R +             + + 
Sbjct: 272 HVPGMHNIYNATAAVAVGHRLGLKMEDIAGALQAFRGVQRRFQLIGEVGGVR----VVDD 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNIS 402
           Y  +P  +KA +     ++P+      AV          ++    +     E      I+
Sbjct: 328 YAHHPTEIKATLKAAKLLNPNK---LYAVFQPHRY--TRTKMLAEEFGNAFEDADEVIIT 382

Query: 403 HVWLSGFH------VLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            ++ +G         + + +AL R   +V Y +  + +  ++   +V GD V+
Sbjct: 383 RLYSAGEAPIPGVSSMLIVEALKRSGKNVTYIDDKEKIPDYLAERVVPGDFVL 435


>gi|295692688|ref|YP_003601298.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           crispatus ST1]
 gi|295030794|emb|CBL50273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           crispatus ST1]
          Length = 459

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 122/413 (29%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVQKAEELNIPII--TEPEVALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +  A       +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSAHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSNDYFIANYDQKD---ILAKEKEVSPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ +        +    Q+   +             I      N+  +L  ++I   
Sbjct: 249 TFSETDHNADYFIGDEYLESQNEKIM---------KISDIKLPGIHNLQNSLVAIAISKI 299

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                    +V     G   R +         + ++S + N  +   AI    Q      
Sbjct: 300 MGADNDDIAAVLSTFTGAKHRLQYVTTLDGCKVYNDSKSTNIEAATVAIPSFKQPEVLIA 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 360 G------------GLDRGFTFDDLVPLFKK-HVKSIVLYGETRYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+          +  GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAWELVEPGDVLLFSPACASWDQFRTFEERGDYFVRFVEELKTK 459


>gi|296394968|ref|YP_003659852.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
          opimelate/D-alanyl-D-alanyl ligase [Segniliparus
          rotundus DSM 44985]
 gi|296182115|gb|ADG99021.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin
          opimelate/D-alanyl-D-alanyl ligase [Segniliparus
          rotundus DSM 44985]
          Length = 491

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 1  MNPLWTFHDLLQAIQGHSIG-IVPQGFVNG-ISIDSRSIAPQEAFFAIKGPHYDGH 54
          M P WT   +  A+ G       P+  V   +  DSR + P   F A+ G   DG 
Sbjct: 1  MIP-WTLRQVAAAVGGKLHQVPDPEQLVTAPLEHDSRKVVPGGLFLAVPGERTDGR 55


>gi|312111768|ref|YP_003990084.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
 gi|311216869|gb|ADP75473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y4.1MC1]
          Length = 451

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 69/383 (18%), Positives = 121/383 (31%), Gaps = 37/383 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V    +     +          +    +LA      S+A  I ITGS GKTTT  ++  
Sbjct: 76  IVKNPGIPYTNPIVKKAIEKHLPVITEVELAYHI---SEAPFIGITGSNGKTTTTTLIYE 132

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L              N       +A+     ++ + EL    L          RPHI+V
Sbjct: 133 MLRE---GEKRPLLAGNIGVAACEVAQKAEANNWLVTELSSFQL----AGIRDFRPHISV 185

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  I  AHL      E  A AKA IF+         +N DD     L   S A  +    
Sbjct: 186 LLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVVNADDELVMRLAENSCAQKVIFSA 245

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +         +        +  W+    +           G H  +N+L  + +  +   
Sbjct: 246 T---------KKLDSGAYIKDGWIYWNDEAVIAVSDIVLPGKHNLENILAAVAVAKLTGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D     K L+ F   + R    +           ++S   N  + + A+S         E
Sbjct: 297 DNKAIAKVLTTFTGVKHRL---QYIATIDGRKFFNDSKATNILATQRALSAF-------E 346

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
              + +L      G    +    L   L  +N+  + L G     +     ++    + Y
Sbjct: 347 KDSVILLAG----GLDRGNEFDALLPYL--HNVKAIILFGQTAAKIARVAKQAGIETIEY 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            + ++            GDV+++
Sbjct: 401 VDNVEKAVPVAYRLSEPGDVILL 423


>gi|307278242|ref|ZP_07559321.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
 gi|306504993|gb|EFM74184.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0860]
          Length = 516

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|257080909|ref|ZP_05575270.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
 gi|256988939|gb|EEU76241.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis E1Sol]
          Length = 508

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|255973740|ref|ZP_05424326.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
 gi|255966612|gb|EET97234.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T2]
          Length = 480

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 2   TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 59

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 60  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 115

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 116 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 174 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 234 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 294 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 349 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 403

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 404 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 451


>gi|325142974|gb|EGC65331.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis 961-5945]
 gi|325198898|gb|ADY94354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis G2136]
          Length = 445

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV---EKIGKKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAITGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|257418283|ref|ZP_05595277.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
 gi|257160111|gb|EEU90071.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T11]
          Length = 508

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/468 (15%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR I  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDITAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|161507313|ref|YP_001577267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus DPC 4571]
 gi|260102632|ref|ZP_05752869.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
 gi|172048225|sp|A8YUN8|MURD_LACH4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160348302|gb|ABX26976.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           helveticus DPC 4571]
 gi|260083556|gb|EEW67676.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           helveticus DSM 20075]
          Length = 459

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVKKAEELNIPII--TEPEIALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFIANYDQKD---ILAKEKEVTPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ ++       +    Q       +     V     G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDSSADYFIGDEYLESQ------NEKIMKIVDIKLPGIHNLQNSLVAIAISKVMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D     LS F   + R            +    +       S    I   +   P  +
Sbjct: 303 DNDDIAAVLSTFTGAKHR----------LQYVTTLDGRKVYNDSKSTNIEAATVAIPSFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 353 EPEVLIAG-----GLDRGFLFDDLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + +  L  +
Sbjct: 407 VNTLQEAVPRAYELSEPGDVILFSPACASWDQFRTFEDRGDYFVKFVKELKTK 459


>gi|149377264|ref|ZP_01895011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
 gi|149358452|gb|EDM46927.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Marinobacter
           algicola DG893]
          Length = 446

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 109/370 (29%), Gaps = 43/370 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A IIAITGS GKTT   ++     +  +          +IG P     +    D  + E
Sbjct: 108 DAPIIAITGSNGKTTVTTLVGEMARAAGRRV----EVGGNIGTPALDL-LGRGADLYVLE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L   R L        A +  ++  H+  +        AK  IF G +       +
Sbjct: 163 LSSFQLETTRELNA----LAATVLNVSDDHMDRYPDKMAYFQAKQRIFNGCQNAVVNLDD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     +   A        FG     +      +   E +W+        +     
Sbjct: 219 A--------LSTPMARDNLRFLCFG-FYRVNPDTFSTRDDDEGTWITFGFDNLLLAEELG 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N++  L +       +D  +  +  F     R +  R   +        +  
Sbjct: 270 LMGQHNISNVMAALALGHAAGLPMDVMLDTVKRFKGLPHRCEFVRRVSD-------VDYI 322

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           N +  +   A +   +      G+ + + G   +  + S      L       +   V L
Sbjct: 323 NDSKGTNVGATTAAIESLVPTGGKIVLIAGGEGKGADFS------LLAEPVAAHCRAVVL 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +  AL   +    +  + G     +     GD V++    +S           
Sbjct: 377 IGADAGTIATALGNRVETVNAADIAGAVHTAKKLAQPGDRVLLSPACASFDMFRDYGDRG 436

Query: 455 CGFYRLINLL 464
             F + +  L
Sbjct: 437 DRFRQQVEGL 446


>gi|227554782|ref|ZP_03984829.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
 gi|227176081|gb|EEI57053.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis HH22]
          Length = 513

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEMPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|257083598|ref|ZP_05577959.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
 gi|256991628|gb|EEU78930.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis Fly1]
          Length = 508

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/468 (15%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + I V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEIPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|240141488|ref|YP_002965968.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
 gi|240011465|gb|ACS42691.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Methylobacterium extorquens AM1]
          Length = 492

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 132/452 (29%), Gaps = 40/452 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V G++ DSR + P   F A+ G   DG  F        A                 +P 
Sbjct: 26  PVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAA-----AAAAGAVAVAGEGTRPADLPE 80

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G
Sbjct: 81  ATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIA 187
           +             +       + E              +  S  G  +     V    A
Sbjct: 141 TVGIVTNRGAEYGSLTTPDPVTLHETLARLVDEGITDLAMEASSHGIEQRRLDGVELTAA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     IE+   AK  +F  L   G   +   D  +              I
Sbjct: 201 AFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGCPAIVNADGAYAERVIGVADAAGHAI 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G+  +   +L +         + +   GK   V    +G    +N L+  G+     
Sbjct: 261 RTTGRGGDF-IRLVEAGTEGFAQSLTLAHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         +      G   R            + + Y   P +++  +S    + P  
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD-YAHKPEALEHVLSA---LRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            GR + V G     G    +    +   ++      V ++  +             L  +
Sbjct: 376 SGRLVVVFG----CGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAAVRDLRAGDVLVVAGKG 463


>gi|152990837|ref|YP_001356559.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
 gi|151422698|dbj|BAF70202.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
           diaminopimelate--D-alanyl-D-alanine ligase
           [Nitratiruptor sp. SB155-2]
          Length = 474

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 75/356 (21%), Positives = 129/356 (36%), Gaps = 31/356 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             K A         TIIA+T S GKT+ K  +   L      Y    S N   G+   + 
Sbjct: 141 YKKEARKKLETIDPTIIAVTASYGKTSIKNFIYQLLKDSYHVYKTPRSVNTLAGIIKDIN 200

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +P   +  + E G    G+I  +T  +  H AV+  + P H+  F  +E I + K EI
Sbjct: 201 TALPQVCEVYVVEAGARERGDILEITKFLNHHYAVVGKVGPQHIEYFKTLENIIATKLEI 260

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                              + LK      G+       K       ++  K   +    +
Sbjct: 261 LH----------------SKRLKKAFLWDGLPVKD-DPKFVKFGSNIKNVKADLDGVSWD 303

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           ++LQG+        +G   A N+   + +   L  D+ T  K +S     E R +R    
Sbjct: 304 LELQGEIFHFQAPILGGFNAFNITAAILVAKELGIDMATLQKRVSQLKGVEHRLQRIEAG 363

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  +ID+S+N N   M A+  ++        GR++ V   + E  E S   +I+LA
Sbjct: 364 GK----VIIDDSFNGNLEGMIASYELVKNYP----GRKVVVTPGIVESDEKS---NIELA 412

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + ++        ++G     +      +I     E    L   +      GD+++ 
Sbjct: 413 KKINEV-FDLAIITGKINKEVLQK-NITIEKIMVEDKKQLQNLLAKHTKSGDLILF 466


>gi|56459545|ref|YP_154826.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
 gi|62900480|sp|Q5R0M3|MURD_IDILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56178555|gb|AAV81277.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina
           loihiensis L2TR]
          Length = 463

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 125/418 (29%), Gaps = 57/418 (13%)

Query: 65  AGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A L++ +       D V       IP+  V DV     +        SK  I+A+TGS G
Sbjct: 80  ADLIIASPGIDLREDPVVLARDADIPI--VGDVELFAQE--------SKLPIVAVTGSNG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+T   M+        K      +   +IGVP+    +       +     S        
Sbjct: 130 KSTVTRMVEFVAKQCGKNV----AAAGNIGVPVLDLLLQEQHPDAVILELSS---FQLES 182

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              ++   A +  I+  H+  +  ++E   AK  IF   +         D     +    
Sbjct: 183 VSSLKLKAAALMNISADHMDRYCTLDEYVKAKQRIFTHAKTWILNRQQQDTWPHPVTGKL 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                      FG             + S    +                G H   N+  
Sbjct: 243 MTFGNDSHPKHFGLLSG------NIDRVSGPVAVTFDGSVVLRADQLQLQGIHNLVNVQA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   +  D++ A++A+  F     R        +      +++S   N  +     +
Sbjct: 297 ALALCQAIDIDIEAAVRAVKEFKGLPHRC---ELVSDNEGVLWVNDSKATNIGAT---AA 350

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +  + P   GR + + G + +  +       +L   L    +  +   G     +    
Sbjct: 351 AVEGLRPMINGRLLLIAGGVGKGADF-----RELQSTLER--VDILLTIGEDGPRIGQLF 403

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             S  V   +++        S +  GD+V++    +S             F   +  L
Sbjct: 404 NGSRQV---KSLQQAVELAASLVQTGDMVLLSPACASFDQFQNFEHRGDSFRHAVEAL 458


>gi|332292531|ref|YP_004431140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170617|gb|AEE19872.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 445

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 116/382 (30%), Gaps = 45/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + ATI+ ITGS GKTTT  +    L               +IG        
Sbjct: 95  EFASQY---TDATIVGITGSNGKTTTTMLTGFILEQAGIN----LGVAGNIGDSYAKMVA 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             ++D  + E+    L  I        PHIAV+  + P HL  +    E   ++K  I  
Sbjct: 148 QKEIDTYVLEISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRIAM 203

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++T  +  + DD        K         +S  K       ++        +     
Sbjct: 204 NQKETDYLIYDADDPVSVDWLKKHPVKSKLLPFSLDKEFENGAFIKDNNL----TVQLNN 259

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H  +N +    + ++L     T  ++L  F   E R       L 
Sbjct: 260 NTFTMATNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHRL---EQVLK 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  +S+ +    G            G    + + DL  +
Sbjct: 317 INNVQYINDSKATNVNATFYALDSMSEPTVWIVG------------GVDKGNNYRDLYPL 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KS 451
           ++   +  +   G     L       + +   + +M             GD V++    +
Sbjct: 365 VNE-KVKAIICLGVDNAKLMSHFGNMVDIIVETPSMSEAVKIAYKVSERGDNVLLSPACA 423

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +  L
Sbjct: 424 SFDLFENYEDRGRQFKEAVRNL 445


>gi|224372973|ref|YP_002607345.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
 gi|223589775|gb|ACM93511.1| D-alanyl-d-alanine-adding enzyme [Nautilia profundicola AmH]
          Length = 470

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 127/385 (32%), Gaps = 40/385 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            L VV   ++AS  +  I             KLA     +    I+AIT S GKT+ K  
Sbjct: 117 VLAVVIAAIIASEITEYILFLK-------YKKLAKEKLTKIDPKIVAITASYGKTSIKNF 169

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           L   L    K Y    S N   G+   +   MP +++  I E G    G+I  +   +  
Sbjct: 170 LYQLLEGTFKVYKTPRSVNTLKGIIKDINVDMPENIEIYIAEAGAREKGDILEIVEFLEN 229

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             +++  I P H+  F  ++ I   K EIF+  +           +   L+         
Sbjct: 230 EYSILGKIGPQHIEYFKTLDNIKQTKLEIFKTPKLKKGFSYEVPYNEKVLVIKNKIK--- 286

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                              K        EV++  +  +     +G   A N+ + +    
Sbjct: 287 -----------------NIKASLNGIEWEVEINDRIHKFECKLLGGFNAVNVTLAIFQAL 329

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                V+   + +        R ++           +ID+S+N N   M  +  ++    
Sbjct: 330 EFGLSVEELKQKVLKLESIPHRLQKIEVGGK----IIIDDSFNGNLEGMIESYELVK--- 382

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G++I V   + E    +   +  LA+ +       V L+G     +      +   
Sbjct: 383 -EYKGKKILVTPGIVE---ATDEQNKQLAKKIDEV-FDLVILTGSINKKVLCENIVNTDK 437

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
                   L   +  +   GD+++ 
Sbjct: 438 IILNDKKDLEKILAENTKAGDLILF 462


>gi|315034403|gb|EFT46335.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0027]
          Length = 514

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 139/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                    I          +  F +                 G +        G     
Sbjct: 270 TAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|256957467|ref|ZP_05561638.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
 gi|256947963|gb|EEU64595.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis DS5]
          Length = 506

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 139/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                    I          +  F +                 G +        G     
Sbjct: 262 TAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|193214547|ref|YP_001995746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
 gi|226711896|sp|B3QWT5|MURD_CHLT3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193088024|gb|ACF13299.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 468

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 108/360 (30%), Gaps = 27/360 (7%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           +LA       KA IIAITG+ GKTT   +      +             +IG P +    
Sbjct: 102 ELASWF---CKAKIIAITGTDGKTTVTTLTKKIFEADGNENGYHAYALGNIGQPFSDTVE 158

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
              + D  + E+    L          RP++ VIT I P HL  +   I++ A+AK  I+
Sbjct: 159 SLSENDVAVIEISSFQL----EHCTSFRPNVTVITNITPDHLDRYDGNIQKYAAAKYRIY 214

Query: 215 EGLEKTGTIFLNYDDSFFELLK--AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-- 270
           +    +  +  N D+          +  A     + +    KN   +             
Sbjct: 215 QNQTASDWLIYNDDNEILHQHFTDPERRASLPMKLVALSLEKNLGDEYEHCAYKENGRLV 274

Query: 271 -WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +  + +    E       +    N+   L   +  +A               EG   R
Sbjct: 275 LKLTNEKEWLIEENQISTKQFRGQHNIYNALTAAAAASALGIDKKFIEKSILSFEGVEHR 334

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S      ++  A+  ++       G            G    + +
Sbjct: 335 LEFVRAVNQVDYINDSKATTVNALWYALDTVTPKIVLIAG------------GRDKGNDY 382

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   +    +  V   G     +  A      V  + ++D            GD V++
Sbjct: 383 TKVFSFVKE-KVRAVVAIGESQEKVVQAFGNLTKVMKAFSLDEAVRLASQEAEAGDTVLL 441


>gi|91228515|ref|ZP_01262437.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
 gi|91187949|gb|EAS74259.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 12G01]
          Length = 485

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 152/433 (35%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVVRELIPRI----SRQVITYGFSEDADVRIEDYRQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    AL   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|262395258|ref|YP_003287112.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|262338852|gb|ACY52647.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 485

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 151/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSLSIPV-FGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      +       +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVIAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVVRELIPRI----SRQVITYGFSEDADVRIENYRQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|301155884|emb|CBW15353.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           parainfluenzae T3T1]
          Length = 437

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 127/367 (34%), Gaps = 49/367 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            II ITGS GK+T   ++     +             +IG+P     +  D D  + EL 
Sbjct: 107 PIIGITGSNGKSTVTTLVYEMAKAAGIKVGMG----GNIGIPALSL-LNEDCDLYVLELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   E          
Sbjct: 162 SFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAETA-------- 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L+ K      +       S   +      K  + + ++  + +          +
Sbjct: 210 ---VVNLEDKLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCDEATLV 266

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  +++    AL  F   + R    + A        I++S   
Sbjct: 267 GRHNYMNILAATALAQAVGINLEAIRTALRQFKGLDHRF---QLAHQANGVRWINDSKAT 323

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG    +LG   +  + S     +LA++++  +IS  +  G
Sbjct: 324 NVGST-----VAALAGLYVEGTLHLLLGGDGKGADFS-----ELADLINQPHIST-YCFG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S   H  ETM+    F++  L  GD+V++    +S             
Sbjct: 373 RDGKQLAALSSQS---HLFETMEQAISFLRPHLKSGDMVLLSPACASLDQFASFEKRGEE 429

Query: 457 FYRLINL 463
           F RL  L
Sbjct: 430 FTRLAKL 436


>gi|269967384|ref|ZP_06181444.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
 gi|269827972|gb|EEZ82246.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio alginolyticus 40B]
          Length = 485

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/433 (16%), Positives = 152/433 (35%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVVRELIPRI----SRQVITYGFSEDADVRIEDYRQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    AL   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|254230417|ref|ZP_04923797.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
 gi|151937050|gb|EDN55928.1| UDP-N-acetylmuramate--alanine ligase [Vibrio sp. Ex25]
          Length = 484

 Score = 71.4 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 151/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSLSIPV-FGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      +       +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVIAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVVRELIPRI----SRQVITYGFSEDADVRIENYRQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|261391934|emb|CAX49396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           8013]
          Length = 445

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGKKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAITGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|300361456|ref|ZP_07057633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
 gi|300354075|gb|EFJ69946.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           gasseri JV-V03]
          Length = 460

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 121/413 (29%), Gaps = 54/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IPV                A   S+A  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVEKALKLNIPVITEP----------EIALNVSEAPYVCVTGSNGKTTTVMLTQRIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IGVP++       + D  + E+    L         ++P +A I
Sbjct: 136 DHHLSKNGGHAYAVGNIGVPISEVVEKATNKDLLVVEMSSFQLL----GVTDIKPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      +    AK  I +  ++      N+D      +  +        + 
Sbjct: 192 VDIYNNVHLDYHKTFDNYVEAKLRITQSQDQNDYFIANFDQKN---ILDRELKKTKAKVQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++          +    +                   G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDKTADYFIGDEYLESK-----DDHQIMKISDIKIPGIHNQQNCLVAIAISKLMGA 303

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D      ALS F        R +  +      + ++S + N  +   AI    +      
Sbjct: 304 DDSDIQYALSTFTG---ATHRLQYVMTYNDRKIYNDSKSTNIEAATVAIPSFKEPEVLIA 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
           G            G         L  +    ++  + L G     L DA  ++    +  
Sbjct: 361 G------------GLDRGFMFDSLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 407

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + I  L  +
Sbjct: 408 VNTLQEAVPRAYELSEAGDVILFSPACASWDQFNTFEERGDFFVKFIKELKTK 460


>gi|170720128|ref|YP_001747816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida W619]
 gi|169758131|gb|ACA71447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           W619]
          Length = 448

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 131/381 (34%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA I+AI+GS  K+T   ++    +   K      + 
Sbjct: 85  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKHV----AV 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  DV+  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 141 GGNLGTPALDL-LSDDVELYVMELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +      +          ++   +  +  +SFG ++  DF+    
Sbjct: 196 PAYHLAKHRIFRGARQVVVNRQDA--------LSRPLPVEGRPCWSFGLNQP-DFKAFGL 246

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   + ++  + Q           G H   N L  L +        +  ++AL  F   
Sbjct: 247 REVDGEKYLAFEFQALMPARELKIRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGL 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R +  R           D+S   N  +    ++ +  +    +G+ + + G   + G 
Sbjct: 307 AHRCQWVRARSGVN---WYDDSKATNVGAA---LAAIEGLGADIDGKLVLIAGGDGK-GA 359

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +A          V L G     L +AL  ++ +   +T+D          V 
Sbjct: 360 DFAALREPVARFCRA-----VVLLGRDADRLAEALGDAVPLVRVKTLDEAVQQCAELAVP 414

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 415 GDAVLLSPACASLDMFKNFEE 435


>gi|329576940|gb|EGG58423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis TX1467]
          Length = 511

 Score = 71.0 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 141/468 (30%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEM--------- 125
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSIAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 126 --LTIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
             +T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQITALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|327441157|dbj|BAK17522.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Solibacillus
           silvestris StLB046]
          Length = 450

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 127/413 (30%), Gaps = 47/413 (11%)

Query: 51  YDGHDFILHAVQKGAGLV-------VVNTDMVASIGSLSIPV---FGVDDVLGALNKLAV 100
           +D +      + KG  ++       +++      + +  IP       D +   L  +  
Sbjct: 43  FDANSEAQELLSKGITVICGRHPEDLLDEGFELVVKNPGIPYTNPIVADAIAKGLPVITE 102

Query: 101 A--ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A L S+A  I ITGS GKTTT  +L      +K          N   V   +A    
Sbjct: 103 IELAYLVSEAPFIGITGSNGKTTTTTLLFEM---LKVGRLKPLIAGNIGTVACGVAAEAK 159

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + EL    L   R      RPHIA++T +  AHL      EE A AK  +     
Sbjct: 160 ADEVIVTELSSFQLMGTREF----RPHIAILTNLYEAHLDYHGTFEEYAEAKFGVTRNQT 215

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  N D         KS A                         +++  +  Q   
Sbjct: 216 ADDYFIYNADQEVVAKYAQKSKAK---------LIPFTTKGHANEGISADKENIYWQGDA 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L  +    +    V+   + L  F     R    +       
Sbjct: 267 ILKRDNIVLPGEHNLENILCAVAAALLQQCPVEAIEEVLGTFAGVRHRT---QFVREWQG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             + ++S   N  + K+A++   Q         I +L    + G   +    ++      
Sbjct: 324 RKIYNDSKATNVLATKSALAAFEQ--------PIVLLAGGLDRGHSFEELRKEMTR---- 371

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             +  V   G   L   +        +      ++    +      +GD++++
Sbjct: 372 --VKAVVAFGETALRFIEFAKSCGITNIVRAIDVEDAVGYGAKMSEEGDIILL 422


>gi|313203975|ref|YP_004042632.1| udp-N-acetylmuramoylalanine--d-glutamate ligase [Paludibacter
           propionicigenes WB4]
 gi|312443291|gb|ADQ79647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paludibacter
           propionicigenes WB4]
          Length = 444

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 111/345 (32%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +I ITGS GKTTT  ++   L +             ++G  L L       D+ + E
Sbjct: 101 KAKMICITGSNGKTTTTMLVYHILKNAGLKV----GLAGNVGQSLALQVATDTFDYYVVE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L          +  IA++  I P HL  +    +    +K  I +   +  +   
Sbjct: 157 LSSFQLD----GMTEFKADIAILLNITPDHLDRYEYNFQNYVDSKFRITQNQTEEDSFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D   +   AK         +S  +S+     + + +   +       +         
Sbjct: 213 WENDPVIKAELAKRKIQSTMYPFSIERSERTKAFIEQDELIIKTLKTLFTMP----TTDL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      SI+    ++  ++L  F   E R               +++S
Sbjct: 269 ALQGMHNTYNSMAAGLAASIVNVRKESIRQSLQDFQGVEHRL---EYVATVKNIRFVNDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +           + +LG     G    + + ++ E L   N+  + 
Sbjct: 326 KATNVNSCWYALQSMKT-------PVVLILG-----GTDKGNDYSEI-EELVKANVKALI 372

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       I  +   ++M+            GD V++
Sbjct: 373 FMGLDNSPLHKFFDGKIERIVDVQSMEDAVKEAYGLAESGDTVLL 417


>gi|312888796|ref|ZP_07748359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
 gi|311298671|gb|EFQ75777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mucilaginibacter
           paludis DSM 18603]
          Length = 461

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 104/372 (27%), Gaps = 42/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  +    L +             +IG            D+ + E
Sbjct: 118 DAKMICITGSNGKTTTTSLTYHILKNAGLNV----GLAGNIGKSFAYQVATEQFDYYVLE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           +    L       +  +  IAV+  I P HL  +   +E   ++K  I +          
Sbjct: 174 ISSFMLD----NMYKFKADIAVLLNITPDHLDRYDYKMENYTASKFRIAQNQTAADYFIY 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       A+         +S  K       L +       +           ++  
Sbjct: 230 CADDPETIKGIAEREIEAQLLTFSIEKKVERGAYLDQQDLIINATLEHF-------KMSL 282

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +      N+  ++                       +    R          + I++S
Sbjct: 283 NKLALQGKHNIYNSMASGITSKVLDIRNKTIRDSMEDFQNIEHRLEFVGKISGISFINDS 342

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +           I +LG + +  +       ++ + L    +  + 
Sbjct: 343 KATNVNSTWYALESM-------SNNVILILGGVDKGNDY------NMLKELVKQKVKSIV 389

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     + DA    + V   + +              GD V++    +S         
Sbjct: 390 CMGKDNNRIHDAFEDDVDVIVNTSSASEAVQVAYHLATKGDTVLLSPACASFDLFESYED 449

Query: 453 NSCGFYRLINLL 464
               F + I  L
Sbjct: 450 RGNQFKQAIKEL 461


>gi|78777404|ref|YP_393719.1| cytoplasmic peptidoglycan synthetases-like [Sulfurimonas
           denitrificans DSM 1251]
 gi|78497944|gb|ABB44484.1| Cytoplasmic peptidoglycan synthetases-like protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 481

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 127/344 (36%), Gaps = 30/344 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIF 165
           K  I+AITGS GKT+ K  L   LS   + YA   S N   G+   +   +P + +  I 
Sbjct: 159 KLQIVAITGSYGKTSIKNFLYEILSKKYRVYATPRSVNTLGGIIKDINESLPNESEIYIC 218

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  +T  + P   V+  +  AH+  F  ++ I S K EI +          
Sbjct: 219 EAGARESGDIYEITTFLEPQNVVVGKVGLAHIEYFKTLQNIISTKLEIMKSPR------- 271

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                       ++      T     K      +++      + +  E+ L  + + +  
Sbjct: 272 ----------LQRAFIHTSVTDEPHEKVTFFGNEIQNIDAKLDGTDFEIHLDNEILSLHT 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G     N+ + + I        D  I+A+    P E R +  +         ++D+ 
Sbjct: 322 NVLGSFQTMNIAVAIRIAKTFGMSNDEIIEAVRGLKPVEHRLQMIKAGGK----LILDDG 377

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           YN N   M  A+ + S      EGR++ V   + E    S   ++ L E ++      V 
Sbjct: 378 YNGNIDGMLEAVRLCSLH----EGRKVIVTPGLVE---SSNELNLKLIEAINSV-FDIVI 429

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G     L        +         +   + S    GD+++ 
Sbjct: 430 VTGSLNAELFSKNLNVKNKIMLHDKTKIESLLSSQTRAGDIILF 473


>gi|328468646|gb|EGF39640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           helveticus MTCC 5463]
          Length = 392

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 19  ENPMVKKAEELNIPII--TEPEIALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 68

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 69  DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 124

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 125 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFIANYDQKD---ILAKEKEVTPAKMQ 181

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ ++       +    Q       +     V     G H  QN L+ + I  ++ A
Sbjct: 182 TFSETDSSADYFIGDEYLESQ------NEKIMKIVDIKLPGIHNLQNSLVAIAISKVMGA 235

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D     LS F   + R            +    +       S    I   +   P  +
Sbjct: 236 DNDDIAAVLSTFTGAKHR----------LQYVTTLDGRKVYNDSKSTNIEAATVAIPSFK 285

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 286 EPEVLIAG-----GLDRGFLFDDLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 339

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F + +  L  +
Sbjct: 340 VNTLQEAVPRAYELSEPGDVILFSPACASWDQFRTFEDRGDYFVKFVKELKTK 392


>gi|325294673|ref|YP_004281187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065121|gb|ADY73128.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 412

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 75/435 (17%), Positives = 130/435 (29%), Gaps = 75/435 (17%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDV----------------LGALNKLAVAARLR 105
           +KG  +++ +      +     P   V                   +  + ++ +A R  
Sbjct: 21  KKGYKVILYDDKEPTKLP--DFPDLVVKSPGIPSYHSVVVSYKKKGIEVIGEIELAYR-Y 77

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
            K  II+ITG+ GK+TT  ++   L               + G+P +       D    +
Sbjct: 78  FKGKIISITGTNGKSTTTALIYQVLKEAGY----KTFIGGNFGIPFSSFAEETTDDSITV 133

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    +          R  I++I  I P H++ +   EE   AK ++    E      
Sbjct: 134 LELSSFQI----EDLKDFRSSISIILNITPDHMNRYKSFEEYVKAKLKLLGHSEFC---I 186

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN DD     L         +  + F + + AD    K K   +   +EV+L        
Sbjct: 187 LNQDDPVLRNL-------NRENFFFFSRKRKADAFFEKGKIFCKDFKIEVELLPLKGIHN 239

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                  +             L     +  K L+ F    G   R            I++
Sbjct: 240 VENYMGAL-----------LALKKLKLSNEKILNGFKTFYGLPHRTELVAEINGIKFIND 288

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  S+K A+     I     G    +  D   +              L    +  +
Sbjct: 289 SKSTNVDSLKKALESYEDIILIAGGSDKGL--DFSSL------------RKLVRERVKGI 334

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
              G      K      + V  S+ +             GDVV++    +S         
Sbjct: 335 VAIGETAEQFKKTFSDIVDVRISDNIFQAVKTAYKLASSGDVVLLSPGCASFDMFKNFED 394

Query: 453 NSCGFYRLINLLLEE 467
               F   + LL E+
Sbjct: 395 RGEKFREAVKLLEEK 409


>gi|305432184|ref|ZP_07401348.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
 gi|304444727|gb|EFM37376.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter coli JV20]
          Length = 475

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 124/347 (35%), Gaps = 31/347 (8%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDF 162
              +  II IT S GKT+ K  L   L    KTY    S N  +G+       +  D   
Sbjct: 151 NNPQLKIILITASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINTNLSDDTQI 210

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G    G+I  +T  + P I ++  I  AHL  F  IE     K E          
Sbjct: 211 YIAEAGARVKGDIDVITRFLEPQICIVGEIGNAHLEYFKNIENTRKTKLEALNSKRLEKA 270

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     + L                     D +L+  +   +    ++ L+ K+ E
Sbjct: 271 FLHTSTQKSEDELI-----------------LLYDDKLQDIQASLQGLEFKINLENKTYE 313

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G   AQN+   +   + L   ++   K +   +  E R +     +++    +I
Sbjct: 314 FKSQILGDFNAQNLCACILCANYLGVKIEKIQKQVLKINSVEHRLQ----IISKEPKFII 369

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ +N N   M A+  +      + +GR++ V   + E+    +  ++ LA++++     
Sbjct: 370 DDGFNGNYKGMSASYKLCK----NYKGRKVLVSPGIVEV---DKDENVKLAKIINECFDL 422

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V  +  +    K  L   I     +    L   +      GD+++ 
Sbjct: 423 AVITAQVNADIFKKELK--IKTIILKEKADLVKVLAKETQQGDLILF 467


>gi|300173574|ref|YP_003772740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
 gi|299887953|emb|CBL91921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 448

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 133/411 (32%), Gaps = 64/411 (15%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T +V     L IP+         L ++A  A    +  +IA+TGS GKTTT  ++   L
Sbjct: 83  ETALVKQAKKLKIPI---------LTEVA-VALSSFEGRLIAVTGSNGKTTTTSLIRDML 132

Query: 131 SSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            S         +   +IG+P   + +     D  + EL    L      T  +RP IA+I
Sbjct: 133 KS----DGQKVTTAGNIGIPVCEVIKDLTADDTLLLELSSFQLM----GTPDIRPDIALI 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL      E   +AK ++ +       + LN D    +    K          +
Sbjct: 185 TNIFANHLDYHGTRENYVAAKFQLTKNQTSNQLLVLNADGQDTDEFIKK----------T 234

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K          +   ++   + +             +G H  +N++  + +  +    
Sbjct: 235 HAKVVAFSRIKNDYTVRTDNVDLIISDNHLMPLSGIKLVGPHNLENIVAAVTVAKLAGVH 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  L  F   E R    +  L        ++S   +  + + A++   Q       
Sbjct: 295 DTAIRHVLETFGGVEHRL---QHVLTDNGVVFYNDSKATDIEATQTALNSFHQ------- 344

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLSGFHVLALKD-ALPRSIHVHYS 427
                L    + G+        L  +L +L ++  V   G     +   A   +  V   
Sbjct: 345 -PTIWLAGGLDRGDD-------LMRLLPNLSHVKAVIAFGETQQKIVAVARAANKPVITV 396

Query: 428 ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466
           + ++          V GDVV++    +S               R +  L +
Sbjct: 397 DDVEQAVPVAVKLAVTGDVVLLSPAAASWDQYKSFEERG---ERYVTELKK 444


>gi|269960242|ref|ZP_06174617.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835049|gb|EEZ89133.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi 1DA3]
          Length = 485

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 149/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G + +AD ++  + Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYGFADDADVRIENYHQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  +KA++       R  
Sbjct: 273 GKFTVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    AL   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|282857257|ref|ZP_06266497.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
 gi|282584907|gb|EFB90235.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Pyramidobacter
           piscolens W5455]
          Length = 436

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 117/375 (31%), Gaps = 56/375 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  IIA+TG+ GKTT   ++   L +             +IG PL         D  + 
Sbjct: 101 LKGKIIAVTGTNGKTTCTALIAHLLRNAGLN----AVSAGNIGNPLAAH-ADRSYDAIVM 155

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L         +RP +AV+T +AP HL      E   + K +IF   ++      
Sbjct: 156 ELSSFQLHWN----TQLRPDVAVLTNLAPDHLDWHGSYENYKNDKCKIFLPRQEECYAVT 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +  D+F         ALG   +         D   R            +  +     +  
Sbjct: 212 HDVDAFRVPAGRAVCALGRGNLR-------IDMDGRDVFLVGHGRRRLLFHKSSLKLLGS 264

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           H +         + L             +   +     E    R      Q     ID+S
Sbjct: 265 HNLENAAMSCAAVALA---------FRDVDPSAGLAGFEALHHRCEPVGEQNGVLFIDDS 315

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N A++ AA+  +        GR++ +LG     G+     + +LA V+         
Sbjct: 316 KGTNVAAVIAALHSI-------NGRKLIILG-----GQGKGESYDELARVVCEETF-AAI 362

Query: 406 LSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSS----------- 452
           + G     +  AL  + + H    + M             GD V++  S           
Sbjct: 363 VIGSEAEKILAALRVAGYGHAVRAKDMAEAVKKASELAAPGDKVLL--SPACTSWDMYHS 420

Query: 453 ---NSCGFYRLINLL 464
                  F +L+  L
Sbjct: 421 YEERGDHFAQLVRAL 435


>gi|325128836|gb|EGC51695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis N1568]
          Length = 445

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|307272480|ref|ZP_07553733.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
 gi|306510765|gb|EFM79782.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0855]
          Length = 513

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKVGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|256964548|ref|ZP_05568719.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
 gi|256955044|gb|EEU71676.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis
           HIP11704]
          Length = 508

 Score = 71.0 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKVGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIIYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|315638156|ref|ZP_07893338.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
 gi|315481692|gb|EFU72314.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter upsaliensis JV21]
          Length = 477

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 125/359 (34%), Gaps = 31/359 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VP 150
              L K        ++ TII IT S GKT+ K  L   L     T+    S N  +G V 
Sbjct: 141 RYFLKKAKHKILKNNRLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIVK 200

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                +  +    I E G    G+I  L+  + P I +I  I  AHL  F  IE     K
Sbjct: 201 DINENLQENTQIYIAEAGARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIENTRETK 260

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E  +          +      E                       D  L  +       
Sbjct: 261 LEALQSKRLKQAFLHSSTLKKDE-----------------SNMTIYDNLLLNFNANLNGI 303

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              ++L  K        +G   A+N+   +   + L   ++T  K ++     E R +  
Sbjct: 304 DFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGVKLETIKKQIANLKAVEHRLQ-- 361

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +++    +ID+ +N N   M  +      ++ + +GRR+ V   + E    S+  + 
Sbjct: 362 --IISKEPKFIIDDGFNGNFKGMSESY----HLAKNYQGRRVLVTPGIIE---GSEEDNK 412

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            LA++++      V +S     AL +     I+    +    L   +     +GD+++ 
Sbjct: 413 KLAKIINES-FDLVIISAHINAALFEK-ELKINKIILKEKAKLVEILAKHTKNGDLILF 469


>gi|291615176|ref|YP_003525333.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585288|gb|ADE12946.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sideroxydans
           lithotrophicus ES-1]
          Length = 464

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 73/386 (18%), Positives = 129/386 (33%), Gaps = 36/386 (9%)

Query: 68  VVVNTDMVASIGSLSIPV---FGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           +V++  +  +   +   +     V+ D+     +LA     R    +IAITG+ GKTT  
Sbjct: 72  IVISPGVPVAEPLVQRAIARGIAVEGDIELLAQQLATNDYRR-NTKVIAITGANGKTTVT 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+    ++        G+ +    V   L          + EL    L      T+ + 
Sbjct: 131 SMVGAMCAAAGLDVQVAGNIS--PAVLDALRARDHQPQVWVLELSSFQL----ETTYTLD 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV+  +   HL  +  ++  A+AKA IF G                + +++ +  L 
Sbjct: 185 ADAAVVLNVTEDHLDRYDSMDSYAAAKARIFIGNGVQVVNR--------DDVRSAAMRLE 236

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   SFG +  A  +     +    +W+    Q           G H   N L  L + 
Sbjct: 237 GRKQTSFGLTPPASDEDWGITREGAATWLMQGAQKILRADELQVTGMHNVANALAALALC 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +    +AL  F     R          G  T  D+S   N  + +AA+  L   
Sbjct: 297 RALGLPIVPLCEALRAFRGLPHRV---EKVAEVGGITYYDDSKGTNVGATEAALKGL--- 350

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                   + +LG   +  + S        +     +   V L G     ++ AL     
Sbjct: 351 ----GKPAVVILGGDGKGQDFSP------LKAAVAQHARAVVLIGRDAPLIERALQGCGK 400

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V  +  MD       ++   GD V+
Sbjct: 401 PVLEAHDMDEAVSMAAANAQTGDAVL 426


>gi|90020493|ref|YP_526320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
 gi|122063257|sp|Q21MH1|MURD_SACD2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89950093|gb|ABD80108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharophagus
           degradans 2-40]
          Length = 456

 Score = 70.7 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 125/348 (35%), Gaps = 29/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                KA ++ ITGS GK+T   ++ +A  +         +   +IGVP+       DV+
Sbjct: 109 FLAERKAPVVGITGSNGKSTVTTLVGLAAENAGMNV----AVGGNIGVPVLDLLADADVE 164

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++      +  +A +  ++P H+  +  +     AK  I+ G +K  
Sbjct: 165 LYVLELSSFQLESVKRA----QLDVACVLNVSPDHMDRYPSLAHYCQAKQRIYFGAKKIV 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      E        +     Y F   K  +   +     ++ + + +  Q    
Sbjct: 221 YN--------LEDTLTIPPVMAGVERYGFSSKKAVEENEKHVLLNNDTNALSLNGQDVFS 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L  L I            +AL  F     R    +   N+   T 
Sbjct: 273 VADIKIAGAHNLKNALAALAICDAANIPFAGLKQALQEFEGLPHRC---QWVANKNGVTY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AAI  L+    +     + + G   +  + S      L +V++ Y +
Sbjct: 330 INDSKATNIGSAQAAIEGLAGQFKN----IVLIAGGDGKGADFS-----SLGKVINQY-V 379

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           S V L G     ++  +   +    ++T++            GD+V++
Sbjct: 380 SAVVLIGVDAPKIQAVVDPQVMCVKAQTLNAAVKQAALLAKSGDLVLL 427


>gi|296284500|ref|ZP_06862498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citromicrobium
           bathyomarinum JL354]
          Length = 433

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 120/406 (29%), Gaps = 71/406 (17%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
             +        +PV G  D+     +L   AR       ++ ITG+ GK+TT  +    L
Sbjct: 79  HPIKPHADKFGVPVIG--DI-----ELFAQAREHLPPHKVVGITGTNGKSTTTALTHHIL 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +         +   +IG+P+       +    + EL    +     LT  +   +AVI 
Sbjct: 132 KTAGV----PTTMGGNIGLPILGQEPLPEGGVYVLELSSYQID----LTFSLDCDVAVIL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  +   E  A AK                            S           
Sbjct: 184 NITPDHLDRYESFEAYAEAK-------------------------LRLSDLQSAGRPTVI 218

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G      +   +     +    + +             G H ++N+     + S L  + 
Sbjct: 219 GDEVLGLWNPGRNVAPEDLWVCDREYPLPGQSNWPTLQGPHNSENVDAAGCLASQLGIED 278

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +AL  F     R         +     +++S   N A+   A++   +I       
Sbjct: 279 AVIDQALRTFPGLPHRM---ERVGERAGVLYVNDSKATNTAAAAPALAAFEKI------- 328

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V G   E G      HI         +++  +  G    A  DAL     V    T+
Sbjct: 329 HWIVGGQAKEPGLGETEQHI--------GHVTAAYTIGEAGDAFADALAPHCPVSRCGTL 380

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           D        +   G+ V++    +S             F  L++ L
Sbjct: 381 DIAVHTAALAAKPGETVLLSPACASFDQFRDFEDRGDRFRALVHAL 426


>gi|241668949|ref|ZP_04756527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877481|ref|ZP_05250191.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254843502|gb|EET21916.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
          Length = 414

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 129/396 (32%), Gaps = 69/396 (17%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D+      +       +KA +IA+TGS GK+T   ML   L ++        
Sbjct: 76  KFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTMLDFVLRNLGY----KS 126

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +IG P  L ++    D+ + E+    +     L + V   +  +  ++P HL  + 
Sbjct: 127 ILVGNIGTP-PLNKIGEKFDYCVVEVSSFQID----LFNSVEFDLGCVVNVSPDHLDRYK 181

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             EE   +K                        L   S    +  +++ G     ++Q+ 
Sbjct: 182 NYEEYKQSKLN----------------------LAKFSKDFFVYDVHNTGIKYAGEYQIV 219

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +     + + +                      N+   + +++I         KA++   
Sbjct: 220 RGSIYKDTTKLLD----------ITETNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIK 269

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +G   R     N    T I++S   N  +  AA++ ++          I +LG + + 
Sbjct: 270 KFKGLKHRCEIVKNIAGVTYINDSKGTNVGATIAALNSIT-----SSKNIILLLGGVAKG 324

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S      L        + +V+L G     +++ +           M   F       
Sbjct: 325 GDFS------LMSKSLAKYVKYVYLYGQDKEYIENYIKDLCQYQICNDMKDAFRLASQKA 378

Query: 442 VDGDVVVV---KSS---------NSCGFYRLINLLL 465
            D ++V++    +S             F +L+  L 
Sbjct: 379 QDSEIVLLSPACASFDEFSGYAERGEVFEKLVAELK 414


>gi|229820901|ref|YP_002882427.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
 gi|229566814|gb|ACQ80665.1| UDP-N-acetylmuramyl-tripeptide synthetase [Beutenbergia cavernae
           DSM 12333]
          Length = 536

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 92/500 (18%), Positives = 153/500 (30%), Gaps = 64/500 (12%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             DL +A      G     G   GI++D+R +AP E F A+ G H  G  F   A   GA
Sbjct: 17  LADLARAHGLRLTGPAAGAGEALGITLDNRGLAPGEIFAALPGAHTHGARFAAAAAAAGA 76

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDV------------LGALNKLAVAARLRS--KATII 111
             V+ +    A+  +  IPV  V DV               +  +A     R   +    
Sbjct: 77  SAVLTDASGAAAAEAAGIPVL-VADVDGSGDGAGRAEFREIVAAVAADVYGRPAERLRTF 135

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVD 159
           A+TG+ GKTTT  +L   L  + +    IG+    IG             P   A +   
Sbjct: 136 AVTGTNGKTTTSFLLAHLLGLLGRRVGLIGTVELRIGDAVVPARLTTPEAPDLHALLAHM 195

Query: 160 VDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
           V+ G+ +L M  S           VR  +A  T +   HL     +E   +AKA +F   
Sbjct: 196 VEAGVTDLVMEVSSHALELHRVDPVRFDLAAFTHLTQDHLDFHGDLEHYYAAKASLFT-P 254

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ----SWME 273
            +     ++ DD +   L   + A GI       + ++A       +         S+  
Sbjct: 255 ARARRAVVSVDDEWGRRLAGDARAAGIDVATLATRGEHAAAAAWTVRDVVAGADAMSFTL 314

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                 ++       G     N  + L             ++AL+               
Sbjct: 315 TGPGDVALTTSLTMPGAFNVANAALALATAIEGGVPAADVVEALAAAGGLRVAVPGRMEV 374

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +      ++D ++N +   +      L+++     GR   VLG   E             
Sbjct: 375 VGAEPRCVVDFAHNTDAVGI-----ALAELRATTSGRLHVVLGATGE----RDRGKRPAM 425

Query: 394 EVLSLYNISHVWLSGFH-------------------VLALKDALPRSIHVHYSETMDGLF 434
              ++     V ++                            A  R + V          
Sbjct: 426 GEAAVLGADAVIVTDDDPHDEDPAQVRAEVLAGALRAAETARAAGRHVDVREVAPRSAAI 485

Query: 435 LFIQSSLVDGDVVVVKSSNS 454
               +     D V+V     
Sbjct: 486 AAAVAGAAPEDTVLVAG-RG 504


>gi|254671173|emb|CBA08279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha153]
          Length = 445

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|302332788|gb|ADL22981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 449

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 135/415 (32%), Gaps = 54/415 (13%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           ++V    +     +SI    V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++ 
Sbjct: 74  IIVKNPGIPYT--VSIIYEAVKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIG 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                 + T    G+      V   +A+     D+ + EL    L  I       +PHIA
Sbjct: 131 DMFKKSRLTGRLSGNIGY---VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIA 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I  AHL     +E   +AK +I++   +   +  NY                    
Sbjct: 184 IITNIYSAHLDYHENLENYQNAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKT 238

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F   +  D          +  ++  +             G H  +N+L  +    +  
Sbjct: 239 LYFSTQQEVDG------IYIKDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAG 292

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   I +L+ F   E R    +           ++S   N  + + A++  +Q     
Sbjct: 293 VPIKAIIDSLTTFSGIEHRL---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWL 349

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHY 426
            G            G    +   +L   +   N+  + + G            +   V  
Sbjct: 350 CG------------GLDRGNEFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIE 395

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
           +  ++     +Q  +   DVV++    +S               + I       P
Sbjct: 396 ANNVEDAVDKVQDIIEPNDVVLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|315173998|gb|EFU18015.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1346]
          Length = 516

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQTHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|315025677|gb|EFT37609.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2137]
 gi|315153888|gb|EFT97904.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0031]
 gi|315156686|gb|EFU00703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0043]
          Length = 516

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|257086023|ref|ZP_05580384.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257420926|ref|ZP_05597916.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
 gi|256994053|gb|EEU81355.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis D6]
 gi|257162750|gb|EEU92710.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis X98]
          Length = 508

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|229548608|ref|ZP_04437333.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|312953043|ref|ZP_07771896.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|229306239|gb|EEN72235.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis ATCC 29200]
 gi|310629072|gb|EFQ12355.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0102]
 gi|327534252|gb|AEA93086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Enterococcus faecalis OG1RF]
          Length = 513

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|156973222|ref|YP_001444129.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|166224748|sp|A7MXR2|MURC_VIBHB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156524816|gb|ABU69902.1| hypothetical protein VIBHAR_00903 [Vibrio harveyi ATCC BAA-1116]
          Length = 485

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 149/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S++AD ++  + Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYGFSEDADVRIEDYHQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  +KA++       R  
Sbjct: 273 GKFTVVREGRANLDITLNIPGRHNALNASAAIAVATEDDISDEAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTIHA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    AL   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRALCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|325980953|ref|YP_004293355.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
 gi|325530472|gb|ADZ25193.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosomonas sp.
           AL212]
          Length = 471

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 73/382 (19%), Positives = 121/382 (31%), Gaps = 30/382 (7%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V    V     L IPV G  D++     L      +    ++AITGS GKTT   M+   
Sbjct: 79  VADPFVQQAIRLGIPVIG--DLVLFSWALEQNKLQK--PKVLAITGSNGKTTVTSMVGAM 134

Query: 130 LSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           L       A  G+     + V +            + E     L     L       +A 
Sbjct: 135 LRKSGWDVAVAGNIGPAILNVLMEQVDAGNWPQAWVLETSSFQLETTHNLNA----DVAT 190

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  ++  HL  ++ +++  +AK +IF     +    +   +           AL      
Sbjct: 191 VLNVSEDHLDRYTCMQDYIAAKLKIFLRENGSVCTQILNRNDSGIS----EMALADGKQI 246

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +FG            ++  +  W+                G H A N L  L +   L  
Sbjct: 247 TFGWDIPPTDADFGIQRDGDDLWLMEGPHRLMKTSELVVNGLHNAVNALAALAMCRALDI 306

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            ++  + AL  F     R             T  D+S + N  +  AA++          
Sbjct: 307 PMNPLVSALREFRGLPHRM---EKVAAFNGVTFFDDSKSTNVGATIAALN---------- 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYS 427
           G +  V+      G+     H          N   V L G     + D L    + VH++
Sbjct: 354 GMKQNVILIAGGDGKGQDFSH---LRQTVAENTRAVVLIGRDAGIIADELKDCGVPVHFA 410

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            TM+            GDVV++
Sbjct: 411 TTMEEAMQKSFLLAQAGDVVLL 432


>gi|311748591|ref|ZP_07722376.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
 gi|126577115|gb|EAZ81363.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Algoriphagus
           sp. PR1]
          Length = 450

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 111/406 (27%), Gaps = 50/406 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++V       IPV    D L         A   S   +IAITG+ GKTTT  +    L +
Sbjct: 77  NIVKKALENGIPVI---DELEF-------AFRYSSGKVIAITGTNGKTTTTLLTYHLLKN 126

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        ++G       +  D D+ + E     +          +P +A++T I
Sbjct: 127 AGLDV----GLAGNVGKSWAAQLLEGDHDWWVIECSSFQID----GFVCFKPAVALLTNI 178

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  +    +                   +         +  K+ ++  KT +    
Sbjct: 179 TPDHLDRYEYKVDNYIQSKFGLFKNMSDEDQVIFNQTDPLTEIGLKTLSVKPKTYWFSST 238

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                             ++  QL  K +++    +      N+   L    I       
Sbjct: 239 ------SNINNGGSLNGEFLHWQLDDKVVQIPLSAMSLQGEHNIQNALCAGLIALLVGVK 292

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                           R            I++S   N  +   A+           G   
Sbjct: 293 KDTIQQSLGSFTNAPHRMELVREIEGVKFINDSKGTNVEATAYALDAFQNPLIWIAG--- 349

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMD 431
                    G    + +  + + +    +  +   G     LK A  P    +  ++ + 
Sbjct: 350 ---------GVDKGNDYQTV-KSIVEEKVKCLICLGKDNEKLKKAFHPLVGEIKETQDIK 399

Query: 432 GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
               + Q   V GDVV++    +S             F   +  L 
Sbjct: 400 EAVRWGQLLAVPGDVVLLSPACASFDLFKNYEDRGDQFRSAVKELK 445


>gi|125624766|ref|YP_001033249.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|166224780|sp|A2RMM5|MURE_LACLM RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|124493574|emb|CAL98559.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071566|gb|ADJ60966.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 483

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 146/477 (30%), Gaps = 65/477 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++   ++  A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD-LE--A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A       ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAANFYEFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSS-----------IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIF 165
                 L              + T      + + +  P       +    +   +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
           E+  S         + +   + V   I+P H+       +E+    K ++ +        
Sbjct: 185 EV--SSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSR---YF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K + +   I   +    S+N   + +     ++ S             
Sbjct: 240 VANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHFVTDGSVSGEFDIRLLGRF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                         +     +I        +                      G    ID
Sbjct: 300 NQENALATALATKALGASFENIRQGLASAIVPGRMELL-----------TAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++N       +  +++  +  H  G+   VLG     GE  +     + E     N+  
Sbjct: 349 YAHNG-----LSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNV-- 401

Query: 404 VWLSG----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD-GDVVVV--KS 451
           +  +      +   + D +    S  + +    +       S   +  D V++  K 
Sbjct: 402 ILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKG 458


>gi|315146886|gb|EFT90902.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4244]
          Length = 516

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPASEVDYSFAVSSDDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|329940199|ref|ZP_08289481.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
 gi|329301025|gb|EGG44921.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseoaurantiacus M045]
          Length = 462

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 151/423 (35%), Gaps = 49/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L       IPV    D   AL
Sbjct: 49  ALRALGVTVHLGH--AAEHLADDASCVVVSSAIRADNPELARAAERGIPVVHRSD---AL 103

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L    R       IA+ G+ GKTTT  ML ++L+++ +  +     +           
Sbjct: 104 ARLMDGLRP------IAVAGTHGKTTTTSMLAVSLTALGREPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 155 LHGEGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L  +          ++G +++AD ++         S + V+
Sbjct: 210 RVVPGGTLVVSADHEGARELTRRL--AKTVRTVTYGAAEDADVRVLSVVPHGLTSEVTVE 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L     L         AL+ +   + R +    A  
Sbjct: 268 LDGAPLTFTVSVPGRHYAHNAVAALVAGRALGIPAAELAPALAAYTGVKRRLQLKGEAGG 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + +SY  +P  M A +     +     GR + V      +   +Q    ++ E 
Sbjct: 328 ----VQVVDSYAHHPTEMTADLEA---MRSGTRGRILVVFQP--HLFSRTQELGKEMGEA 378

Query: 396 LSLYNISHVW---------LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V          L G     + DA       V     M  +   +      GD
Sbjct: 379 LALADASVVLDIYPAREDPLPGVTSELIIDAARAAGADVRAVHGMAEVPEALAGMAEPGD 438

Query: 446 VVV 448
           +V+
Sbjct: 439 LVL 441


>gi|148826251|ref|YP_001291004.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
 gi|166224762|sp|A5UCX0|MURD_HAEIE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148716411|gb|ABQ98621.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittEE]
          Length = 437

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 130/368 (35%), Gaps = 49/368 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   E          
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAEVGVLNNE--- 213

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K      +       S   +      K  + + ++ V+ +          +
Sbjct: 214 --------DKLTFGEGENQARQTVSFAENSADYWLKTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D    AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAVGINLDAIRTALRHFKGLDHRF---QLAHQANGVRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S  AA+S L     + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGSTVAALSGL-----YVEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S   +  ETM+    F++ +L  GD+V++    +S             
Sbjct: 372 RDGALLAKLSSQS---YLFETMEQAIAFLRPTLQSGDMVLLSPACASLDQFASFEKRGEE 428

Query: 457 FYRLINLL 464
           F RL   L
Sbjct: 429 FTRLAQCL 436


>gi|300726288|ref|ZP_07059741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
 gi|299776485|gb|EFI73042.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bryantii B14]
          Length = 443

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 110/372 (29%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     +             +IG  L L       ++ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKTAGYD----AGLAGNIGNSLALQVAEEPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   +  +   
Sbjct: 157 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDNKFENYADAKMRILQNQTQEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    +S  K KN    +   K   E        Q        
Sbjct: 213 WNDDPVIQKELNKFKITGRACPFSEIKEKNVIGYIEDGKYIIEHPTPFCMEQDDMS---- 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+  +L                        G   R            I++S
Sbjct: 269 ----LTGKHNIYNSLAAGIAADIAGIKKEDIHKGLSSFPGVEHRLEKVCKVDGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMKT-------PTILILG-----GKDKGNDYSQIYDLVKEKCRGLVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L +   +  I V  +  M       +     GD V++    +S         
Sbjct: 373 L-GADNKKLHENFDQFGIPVKDTHGMKECVQACRDLAQPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGEQFKTLVRSL 443


>gi|315031426|gb|EFT43358.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0017]
          Length = 516

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|304386674|ref|ZP_07368956.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
 gi|304339259|gb|EFM05337.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           meningitidis ATCC 13091]
          Length = 445

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTPLC------DALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGIDAPKIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|301169876|emb|CBW29480.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae 10810]
          Length = 437

 Score = 70.7 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 125/366 (34%), Gaps = 49/366 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   E       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHNAEVGVLNNEDKL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++  + +          +
Sbjct: 217 TFGEGENQAKQTVSFAENSADYWL-----------KTENGKQYLMAKDEVILPCEEVTLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D    AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAVGINLDAIRTALCHFKGLDHRF---QLAHQANGVRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++   I   +  G
Sbjct: 323 NVGST-----VAALAGLYVEGKLHLLLGGDGKGADFS-----ELAELINQPQI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S   H  ETM+    F++  L  GD+V++    +S             
Sbjct: 372 RDGAQLAKLSSQS---HLFETMEQAIAFLRPILQSGDMVLLSPACASLDQFASFEKRGEE 428

Query: 457 FYRLIN 462
           F RL  
Sbjct: 429 FTRLAQ 434


>gi|319776623|ref|YP_004139111.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|329124136|ref|ZP_08252683.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
 gi|317451214|emb|CBY87447.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3047]
 gi|327467561|gb|EGF13059.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           aegyptius ATCC 11116]
          Length = 437

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 123/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A I  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|221213282|ref|ZP_03586257.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
 gi|221166734|gb|EED99205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD1]
          Length = 513

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 81/481 (16%), Positives = 154/481 (32%), Gaps = 52/481 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLRAGDVFVAYA---VDGADNRAFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  +  +    V  +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAATPNAPVA-LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++ +  A IG+  +  G+P  L                             
Sbjct: 125 TQWIAAALTALHQPCAIIGTLGS--GMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      E    A               +N
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFEAY-EAAKAKLFAWRGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGKSM 281
            DD+    L  K         Y  G ++ A    R       +  +  +   ++      
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLRSSWGDA 301

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  ++   P  GR +R    L      +
Sbjct: 302 DVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    GR + + G     G    +    L   ++    
Sbjct: 362 VID-YAHTPDALEKTLDALRPIAVARGGRLVCMFG----CGGDRDATKRPLMGAIAERLA 416

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +         E      L         DVVV+  K
Sbjct: 417 DDVVVTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|295839427|ref|ZP_06826360.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
 gi|295827472|gb|EFG65414.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Streptomyces sp. SPB74]
          Length = 470

 Score = 70.7 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 83/430 (19%), Positives = 129/430 (30%), Gaps = 43/430 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATI 110
           G DF   A   GA   + +      + +   PV  V D  G +  LA             
Sbjct: 14  GADFAAQAASLGAVAALTDPAGAERVLAAGRPVLVVGDPRGRMGALAARIYGNPGDGLLQ 73

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELG 168
           I ITG+ GKTTT  ++   L +   +   IG+    IG     +    P   D       
Sbjct: 74  IGITGTSGKTTTAYLMEGGLRAAGHSTGLIGTVETRIGDERLKSERTTPEATDLQALFAV 133

Query: 169 MSHLGEIRFLTHLVR------------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           M   G       +                +AV   ++P H+   SG+E+   AKA++F  
Sbjct: 134 MRERGVDAVAMEVSSHALVLGRVDGVVHDVAVFNNLSPEHMEFHSGMEDYFQAKAQLFTR 193

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                 +    D     L+           I +F    + D   R        +     +
Sbjct: 194 ARSRRGVVNRDDAYGRRLVAEA-----EVPIVTFSAEGHPDADWRAEDVEIRATDSVFTV 248

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G              A N+  TL  V+ L        +A        G   R       
Sbjct: 249 VGPDGSRYPARAPLPGAFNVANTLAAVAALAEAGIDPGRAAEGIGAVPGVPGRLERVDEG 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             +  + +  +       A  SVL  +    EGR   VLG     G+   +    +    
Sbjct: 309 QPYLAVVDYAH----KTDAVESVLRSLRRVTEGRVHVVLG---CGGDRDTTKRGPMGAAA 361

Query: 397 SLYNISHVWLSG----FHVLALKDA-LPRSIHVHYSETMDGLFL--------FIQSSLVD 443
           +    + V  S        LA+  A L  +  V   E  D L           + +    
Sbjct: 362 ARLADTAVLTSDNPRSEDPLAILAAMLAGAAEVPVHERGDVLVEADRAAAIAAVVARAEP 421

Query: 444 GDVVVV--KS 451
           GD V++  K 
Sbjct: 422 GDTVLIAGKG 431


>gi|322436304|ref|YP_004218516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
 gi|321164031|gb|ADW69736.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 124/354 (35%), Gaps = 31/354 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA         ++IAITGS GKTTT  +     +      A       +IG+P+     
Sbjct: 100 ELASRFLD---GSVIAITGSNGKTTTTTLTGKIFADA----ALPTLVGGNIGLPVIDLIA 152

Query: 157 PVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               + + + E+    L          +P IA++  + P HL      E    AKA I  
Sbjct: 153 ESRPETWSVLEVSSFQL----ETATTFKPRIAMVLNVTPDHLDRHKTFERYWEAKARITA 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             E    + LN +D   + + AK+ A   +  +  G+ +         +          +
Sbjct: 209 CQESEDFLILNAEDVNAQKMAAKTRA---QIYWFSGRRQVKQGAFVHGESVFFLGKEGGK 265

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H  +N+L  +    +   D +T   A+  F   E R +  R    
Sbjct: 266 PEPVLPVSEIALKGAHNVENVLAAVCAARLAGIDAETIRAAVKGFRAVEHRLELVRVRNG 325

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  +   A+   +       G    +LG     G+   S +  L+ +
Sbjct: 326 VE---FYNDSKATNVDATVKAVESFA-------GGIHLILG-----GKDKDSDYATLSAL 370

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    +  V+  G     ++  L   + +  + T+D        + V  ++V++
Sbjct: 371 LKER-VRVVYTIGSAAEKIERQLDGVVKIVQAGTLDKAVKLAAEAAVSDEIVLL 423


>gi|221202509|ref|ZP_03575539.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
 gi|221208169|ref|ZP_03581174.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221172072|gb|EEE04514.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2]
 gi|221177604|gb|EEE10021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans CGD2M]
          Length = 513

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 153/481 (31%), Gaps = 52/481 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLRAGDVFVAYA---VDGADNRAFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  +  +    V  +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAATPNAPVA-LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++ +  A IG+  +  G+P  L                             
Sbjct: 125 SQWIAAALTALHQPCAIIGTLGS--GMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      E    A               +N
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFEAY-EAAKAKLFAWRGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKSM 281
            DD+    L  K         Y  G ++       +      +  +  +   ++      
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDTQQALDADRELVALDVRATATGTAFRLRSSWGDA 301

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  ++   P  GR +R    L      +
Sbjct: 302 DVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    GR + + G     G    +    L   ++    
Sbjct: 362 VID-YAHTPDALEKTLDALRPIAVARGGRLVCMFG----CGGDRDATKRPLMGAIAERLA 416

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +         E      L         DVVV+  K
Sbjct: 417 DDVVVTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|56551725|ref|YP_162564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|62900668|sp|Q5NPA7|MURD_ZYMMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56543299|gb|AAV89453.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 441

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 121/421 (28%), Gaps = 73/421 (17%)

Query: 64  GAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G    VV+         + A      IP+ G  D+           R   +  ++ ITG+
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   L               +IG+PL  A    D    + EL    +    
Sbjct: 131 NGKSTTTALIHHILKEA----GLPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID--- 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++ 
Sbjct: 184 -LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVIA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +S A  +                                   S E   +        N 
Sbjct: 243 KQSAAHLVTV----------------------------HADNISAEDQVNWPNLQGPHNA 274

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +  +++      +            G   R +    +     ID+S   N  +   A
Sbjct: 275 QNAVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERRGVLFIDDSKATNAMATAPA 334

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++    I          +LG + +  +L               +I   +  G        
Sbjct: 335 LAAFPAI--------HWILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYAQ 379

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            L    ++V    T++             +VV++    +S             F +++  
Sbjct: 380 LLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFKKIVEA 439

Query: 464 L 464
           L
Sbjct: 440 L 440


>gi|315125604|ref|YP_004067607.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
 gi|315014117|gb|ADT67455.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Pseudoalteromonas sp. SM9913]
          Length = 469

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 81/434 (18%), Positives = 149/434 (34%), Gaps = 57/434 (13%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPV---FGV 88
           R I    E F         GH  + +  A      +VVV++ +  +   +         V
Sbjct: 44  RLIKAGAEVFI--------GHHENNVKDA-----NVVVVSSAIDKTNPEIQAAQAARIPV 90

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
             V  A   LA   R R     IAI G+ GKTTT  ++    +        I     +  
Sbjct: 91  --VRRA-EMLAELMRFRHG---IAIAGTHGKTTTTSLIASIYAQAGLDPTFIIGGLLNS- 143

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIA 207
                       DF I E   S    +      ++P ++VIT I   H+  +   +E++ 
Sbjct: 144 --AGSNAKVGKSDFLIAEADESDASFLH-----LQPMVSVITNIEEDHMETYGGSLEKMK 196

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
               E    L   G   +  D      L  +     I    ++G+S  AD+++  + Q +
Sbjct: 197 DTYVEFIHNLPFYGLAVVCIDSDVAAELIPRFGRPVI----TYGESHEADYRMSDFSQTA 252

Query: 268 E-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +     QG+S+    +  G H A N    + +           + AL  F     R
Sbjct: 253 NTCQFTVTNKQGESLTAKLNMPGKHNALNATAAIAVAKDQNIANHAILAALDTFEGIGRR 312

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            + Y    N+    ++ + Y  +P+ + A I+   +  P        V+         ++
Sbjct: 313 FQHYGEFENERGSVMLVDDYGHHPSEVAATITAAREGWPDK----RLVMVYQPHRYTRTR 368

Query: 387 SFHIDLAEVLSLYNISHVWL-----------SGFHVLALKDAL-PRSIHVHYSETMDGLF 434
             + D  +VL+  ++  + L            G    +L  +L  R     +  +   L 
Sbjct: 369 DLYEDFVKVLA--DVDQLLLLDVYSAGEEPIVGADSKSLCRSLRQRGKEPLHVASSSELA 426

Query: 435 LFIQSSLVDGDVVV 448
             + + L + D+V+
Sbjct: 427 GVLANCLQNNDLVL 440


>gi|78212334|ref|YP_381113.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Synechococcus sp. CC9605]
 gi|78196793|gb|ABB34558.1| UDP-N-acetylmuramyl-tripeptide synthetases [Synechococcus sp.
           CC9605]
          Length = 501

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/479 (15%), Positives = 132/479 (27%), Gaps = 45/479 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK--- 63
            H LL          +    +  I+ DSR + P   F  + G   DG  F   A++    
Sbjct: 5   LHALLSDAGIAVPPGLVNPGLGAITTDSRRVGPGTLFLGLPGERVDGGTFWAQALEAGAA 64

Query: 64  --------------GAGL--VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
                         GA    VV+   +   IG ++   +  D     +  + V       
Sbjct: 65  AAVIGAEAAAAQPPGADAPVVVIQEPVARRIGEIAAAFW--DHPCRCMALIGVTGTNGKT 122

Query: 108 ATIIAITGSVGKTTTKE-MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            T   I            +    ++                 +             G+  
Sbjct: 123 TTTHLIEHLAASAGQSVGLFGTLVNRWPGQSITATHTTAFADLLQGQLAEAASAGCGLAA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EKTGTI 223
           + +S     +      R   AV T +   HL   + +E+   AKA +F            
Sbjct: 183 MEVSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLADGARS 242

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N DD + E L  +   LG     S  +  +A+  +   +  +      +         
Sbjct: 243 VVNSDDPWGERLAER---LGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPVGEGRF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  +G++      +   ++A+  F    GR    R  LN      + 
Sbjct: 300 RSPLLGRFNLMNLLQAIGVLLQQQLPLPVLLEAIGRFGGVPGR--MERVILNGVDAANLP 357

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
                   +     + LS   P   GR I V G     G             ++      
Sbjct: 358 PVLVDYAHTPDGLDNALSAARPFCAGRLICVFG----CGGDRDRGKRPQMAEIAARLADR 413

Query: 404 VWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +            +   +P    +              +     D+V+V  K 
Sbjct: 414 VVVTSDNPRTEDPRQILDDVVAGIPPGSDLLVEGDRAQAIASAIAEAEPNDLVLVAGKG 472


>gi|323479850|gb|ADX79289.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein
           [Enterococcus faecalis 62]
          Length = 506

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|315149406|gb|EFT93422.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0012]
          Length = 513

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAEICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|307277046|ref|ZP_07558152.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|312904314|ref|ZP_07763476.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|306506290|gb|EFM75454.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX2134]
 gi|310632410|gb|EFQ15693.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0635]
 gi|315030594|gb|EFT42526.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX4000]
 gi|315159715|gb|EFU03732.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0312]
 gi|315162688|gb|EFU06705.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0645]
 gi|315578755|gb|EFU90946.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0630]
          Length = 514

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|256854472|ref|ZP_05559836.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|257089097|ref|ZP_05583458.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
 gi|256710032|gb|EEU25076.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Enterococcus faecalis T8]
 gi|256997909|gb|EEU84429.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis CH188]
          Length = 506

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 30  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 87

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 88  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 143

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 144 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 201

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 202 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 261

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 262 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 322 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 376

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 377 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 431

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 432 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 479


>gi|229546496|ref|ZP_04435221.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|307289939|ref|ZP_07569868.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
 gi|229308396|gb|EEN74383.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Enterococcus faecalis TX1322]
 gi|306499005|gb|EFM68494.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0411]
          Length = 511

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 35  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 92

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 93  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 148

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 149 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 206

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 207 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 266

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 267 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 326

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 327 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 381

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 382 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 436

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 437 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 484


>gi|154488876|ref|ZP_02029725.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
 gi|154083013|gb|EDN82058.1| hypothetical protein BIFADO_02184 [Bifidobacterium adolescentis
           L2-32]
          Length = 517

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 129/430 (30%), Gaps = 38/430 (8%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           L + I+G    + P          + I+ D+R + P   F   KG  +   +++    ++
Sbjct: 18  LREIIRGDVWTLDPHDIKGFDEPFSAITYDTRKVEPGT-FLCCKG-RFKA-EYLQGIDER 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
           G    V   D   +      P   VDDV  A+  L+     R + +  ++ ITG+ GKTT
Sbjct: 75  GLAAYVSENDFSDA---TQAPGLIVDDVRKAMALLSAEFYGRPQDQLKVVGITGTKGKTT 131

Query: 122 TKEMLTIALSSI-----------KKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFE-- 166
           T  +    L+                        + +  P  +   RM  +      E  
Sbjct: 132 TAYLTQAMLNGCSGGKCALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAVDNGMEYL 191

Query: 167 -LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
            + +S           +   +A    I+P H+S       E+    K +I +        
Sbjct: 192 VMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYLHCKRQIVKNCRALVLG 251

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                        A+  ++ + T    G S             S  S +        + +
Sbjct: 252 ADCARADLIRQ-DARHASVPVTTFALGGDSTADVMAAPANDDHSRFSIVIDGASIGELSL 310

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
              G   +      + +   +        A  AL    P    G+       +     I 
Sbjct: 311 TLDGDFNYANTAAAVAIARAAGFDFGSAQAKDALREMEPVRIAGRMEHFKDTRSNTIAIV 370

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  N AS+ A +  + Q     +     + G     G  +     ++    +   I H
Sbjct: 371 D-YAHNYASVTALLDYVDQRYGSEKPEITLITGSA---GNKAYDRRAEIV-HAAQDRIDH 425

Query: 404 VWLSGFHVLA 413
           + L+      
Sbjct: 426 LVLTFEDTDD 435


>gi|16273062|ref|NP_439294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae Rd KW20]
 gi|260580220|ref|ZP_05848050.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
 gi|1171072|sp|P45063|MURD_HAEIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|1574691|gb|AAC22791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Haemophilus
           influenzae Rd KW20]
 gi|260093504|gb|EEW77437.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae RdAW]
          Length = 437

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 123/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  +TM+    F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFDTMEQAIEFLRPTLQSGDMVLL 409


>gi|167626512|ref|YP_001677012.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|189082909|sp|B0TZ72|MURD_FRAP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167596513|gb|ABZ86511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 414

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 126/396 (31%), Gaps = 69/396 (17%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D+      +       +KA +IA+TGS GK+T   ML   L           
Sbjct: 76  KFKQKIVSDIDLFYQSI-----RNTKAKMIAVTGSNGKSTIVTMLDFVLRD----MGYKS 126

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +IG P  L ++    D+ + E+    +     L + V   +  +  ++  HL  + 
Sbjct: 127 ILVGNIGTP-PLNKIGEKFDYCVVEVSSFQID----LFNSVEFDLGCVVNVSLDHLDRYK 181

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             EE   +K                        L   S    +  +++ G     ++Q+ 
Sbjct: 182 NYEEYKQSKLN----------------------LAKFSKDFFVYDVHNTGIKYAGEYQIV 219

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           +     + + +                      N+   + +++I         KA++   
Sbjct: 220 RGSIYKDTTKLLD----------ITETNLFGEHNLENIIVVLNIFDRFGIDISKAVAAIK 269

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
             +G   R     N    T I++S   N  +  AA++ ++          I +LG + + 
Sbjct: 270 KFKGLKHRCEIVKNIAGVTYINDSKGTNVGATIAALNSIT-----SSKNIILLLGGVAKG 324

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+ S      L        + +V+L G     +++ +           M   F       
Sbjct: 325 GDFS------LMSKSLAKYVKYVYLYGQDKEYIENYIKDMCRYQICNDMKDAFRLASQKA 378

Query: 442 VDGDVVVV---KSS---------NSCGFYRLINLLL 465
            D ++V++    +S             F +L+  L 
Sbjct: 379 QDSEIVLLSPACASFDEFSGYAERGEVFEKLVAELK 414


>gi|313667815|ref|YP_004048099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica ST-640]
 gi|313005277|emb|CBN86710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           lactamica 020-06]
          Length = 445

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 129/417 (30%), Gaps = 52/417 (12%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKGAGLV-----VVNT-DMVASIGSLSIPVFGVDDVLG 93
            A  G  +DG  F    +  A+  G  ++     +      + +       V+G  D+  
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGRVWG--DI-- 98

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              +L      R    +IAITGS GKTT   ++   L         I        +    
Sbjct: 99  ---ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEW 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            R     D  + EL    L         +RP  A +  I+  HL  +  + + A  K +I
Sbjct: 155 QRAGKKADVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKI 210

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F G         +                G +  +   + +   +  R+  +  + +   
Sbjct: 211 FRGDGVQVLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDL 263

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +  Q   ++ +H+      A  +   +G+      +     +             R    
Sbjct: 264 IATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQG---------LPHRVEKI 314

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +     ID+S   N  +  AAI+ L             +LG M +  + +        
Sbjct: 315 GEKNGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------L 361

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 362 RDALKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|188994489|ref|YP_001928741.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
 gi|226722944|sp|B2RIE9|MURD_PORG3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188594169|dbj|BAG33144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis ATCC 33277]
          Length = 450

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 124/389 (31%), Gaps = 33/389 (8%)

Query: 67  LVVVNTDMVASIG--SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            +++    +        + PV    V   +G ++++  A R  + A ++ ITGS GKTTT
Sbjct: 62  AIILEAKEIIKSPGIPDTAPVIRQAVAKEIGIVSEIEFAGR-YTDAFMVCITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L   L               ++G  L          + + EL    L       +  
Sbjct: 121 TMWLYHTLCKAGLDV----GLAGNVGFSLARQVAYDPHPYYVIELSSFQLD----NMYDF 172

Query: 183 RPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R ++A++  I P HL  +    E  A AK  I    +         DD F     A+   
Sbjct: 173 RANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQPEDCFIYWEDDPFISRWVAEH-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +  F      D       + +E   M +       E +    G H   N + T  
Sbjct: 231 PPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAI 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +    +   +AL  F     R ++            I++S   N  S   A+  + 
Sbjct: 291 AAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVD---YINDSKATNVNSTWYALESMK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                   R I +LG     G    + + D+ E L L  +  +   G     L       
Sbjct: 348 T-------RVILILG-----GTDKGNDYTDI-ENLVLSKVDGLIFLGIDNEKLHKFFDGK 394

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  +  + +M             GD V++
Sbjct: 395 ISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|282880606|ref|ZP_06289312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305501|gb|EFA97555.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 443

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 122/372 (32%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++     +             +IG  L L       ++ I E
Sbjct: 101 HSKMICITGSNGKTTTTSLIYHIFKAAGYD----AGLAGNIGRSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  +  IA++  I P HL  +   ++    AK  I +   +  +   
Sbjct: 157 LSSFQLD----NMYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRIIQNQTEKDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     ++  +S  K K +   + + +   E+            +   
Sbjct: 213 WNDDPIIKRELQKYDIKAVQCPFSELKEKGSIGYIEEGQYTIEK-----PTPFNMEQEAL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     D   K+LS F   E R ++            I++S
Sbjct: 268 SLTGKHNVYNSLAAGIATDIAGIRNDVIRKSLSDFSGVEHRLEKVCKVGGVE---YINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++          + +LG     G+   + +  + E++    +  V+
Sbjct: 325 KATNVDACWYALESMNT-------PTVLILG-----GKDKGNDYQLIKELVKKKCVGLVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L +      I V  + +M             GD V++    +S         
Sbjct: 373 L-GADNTKLHNNFDSLGIPVRDTHSMKECVEACYEMARPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGNQFKTLVRNL 443


>gi|302871367|ref|YP_003840003.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574226|gb|ADL42017.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 455

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 138/423 (32%), Gaps = 47/423 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + K   LVVV+        S  I V      +  + ++ +A R      I+AITG+ 
Sbjct: 64  DEVIDK-IQLVVVS---PGVPLSKRIVVLAHKKGVEVIGEIELAYRFCKSKNIVAITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L               +IG+P         +    + E+    L  I+
Sbjct: 120 GKTTTTTLVGEILKKQHDDV----VVCGNIGLPFIDTVETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+  + +E    AK  IFE +++ G   LNYD+     L 
Sbjct: 176 YF----KPKVGCILNITPDHLNRHATMENYVKAKMRIFENIDEAGYTVLNYDNGITRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                L  + +  F K+KN    +   ++         + Q    +      G H  +N 
Sbjct: 232 ----GLAKRNVIVFSKNKNHFKNMVFVEENKIYFTFGGKTQEVMKKDEIFIPGEHNLENA 287

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +          DT    L  F   E R                ++S   N  + + A
Sbjct: 288 LAAIACTLPFGVAKDTIKDVLKTFKGVEHRI---EFVTEINGIKFYNDSKGTNTDAAEKA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           IS          G            G          A +++   +  V+L G     + +
Sbjct: 345 ISAFESPIILIAG------------GYDKGESFERFAGLIAK-KVKKVFLLGQTKQKIAN 391

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
            L +    +     ++             GDVV++    +S             F   +N
Sbjct: 392 ELEKIGYQNFELVSSLKEAVEKSFEYAKSGDVVLLSPACASWDMFENYEQRGKMFKEYVN 451

Query: 463 LLL 465
            LL
Sbjct: 452 ELL 454


>gi|241762283|ref|ZP_04760364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|241373186|gb|EER62816.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
          Length = 441

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 121/421 (28%), Gaps = 73/421 (17%)

Query: 64  GAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G    VV+         + A      IP+ G  D+           R   +  ++ ITG+
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   L               +IG+PL  A    D    + EL    +    
Sbjct: 131 NGKSTTTALIHHILKEA----GLPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID--- 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++ 
Sbjct: 184 -LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVIA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +S A  +                                   S E   +        N 
Sbjct: 243 KQSAAHLVTV----------------------------HADNISAEDQINWPNLQGPHNA 274

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              +  +++      +            G   R +    +     ID+S   N  +   A
Sbjct: 275 QNAVLAMAVAHILGISDDVISKALVSYAGLPHRMQKIGERRGVLFIDDSKATNAMATAPA 334

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++    I          +LG + +  +L               +I   +  G        
Sbjct: 335 LAAFPAI--------HWILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYAQ 379

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            L    ++V    T++             +VV++    +S             F +++  
Sbjct: 380 LLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFRKIVEA 439

Query: 464 L 464
           L
Sbjct: 440 L 440


>gi|224024607|ref|ZP_03642973.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
 gi|224017829|gb|EEF75841.1| hypothetical protein BACCOPRO_01334 [Bacteroides coprophilus DSM
           18228]
          Length = 444

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 118/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 QAKMICITGSNGKTTTTSLIYHIFKKAGLNV----GLAGNIGQSLAFQVAKCNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYGYQMQNYVDAKFRIIQNQTDADAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  + +              + +    +     +   
Sbjct: 214 WNDDPVIQRELHKYGIHGHYYPFAEKREEGLAAF-----VEENKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      +I     +   +AL+ F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVEHRLEKVCRVRGVE---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + + +LG     G+   + + ++A+++     S + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYNEIADLVRE-KCSGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D      + +   ++M             G+ V++    +S         
Sbjct: 373 FMGLHNEKLHDFFDGFGLPIVDVQSMKDAVDAAYQMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F + +  L
Sbjct: 433 RGDQFKKYVREL 444


>gi|53711599|ref|YP_097591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60679849|ref|YP_209993.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
 gi|60389935|sp|Q64ZL9|MURD_BACFR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81174945|sp|Q5LIJ5|MURD_BACFN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52214464|dbj|BAD47057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           fragilis YCH46]
 gi|60491283|emb|CAH06031.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis NCTC 9343]
          Length = 444

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 121/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEEKHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IAV+  I P HL  +   ++   +AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K + +   +   +       +   +     +   
Sbjct: 213 WNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFNMEQEQL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGEQFKKYVREL 444


>gi|33862503|ref|NP_894063.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Prochlorococcus marinus str. MIT 9313]
 gi|46576942|sp|Q7V8U6|MURE_PROMM RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|33640616|emb|CAE20405.1| UDP-N-acetylmuramyl-tripeptide synthetase [Prochlorococcus marinus
           str. MIT 9313]
          Length = 507

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/485 (14%), Positives = 136/485 (28%), Gaps = 42/485 (8%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  +   H LL+A+       +    +  +S DSRS+A    F  + G   DG  F   A
Sbjct: 1   MTQM--LHSLLRAVGLPVPEGLANPSLAMVSCDSRSVAQGCLFLGLPGEQVDGGSFWRQA 58

Query: 61  VQKGAGLVVVNTDMVA--SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           +  GA   V+     A    G     V   + V   + +LA A   +  +    I  +  
Sbjct: 59  LAAGAEAAVIGPAAAALQPPGPTDAVVVVPEPVAAWVGQLAAAFWQQPSSRFALIGVTGT 118

Query: 119 ----------KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE-- 166
                     +  +  +                             R+   +   +    
Sbjct: 119 NGKTTTTHLIEHLSVAVGRSTALFGTLVNRWPNYSVPATHTTAFADRLQAQLAQAVEAGA 178

Query: 167 ----LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---EK 219
               + +S     +      R   AV T +   HL     +E    AKA++F        
Sbjct: 179 ELGVMEVSSHALEQQRVAGCRFAGAVFTNLTQDHLDYHCSMEAYFEAKAQLFAPPLLESG 238

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQ 277
           +    +N D  +   L  +      ++  + G  + AD +L+  +     +     +   
Sbjct: 239 SAKAVVNIDSPWGARLAQRLGDTCWRSSLAEGVLQQADAELKMTELTMSSDGVQGRLISP 298

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                     +G     N+L  +G++      +   +KA++ F    GR    R  +   
Sbjct: 299 CGEGWFDSPLMGRFNLMNLLQAVGVLLQQGLPLPLLLKAIADFRGVPGR--MERVLIPAA 356

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T +         +     + L    P        V G     G             ++
Sbjct: 357 DATQVPTVLVDYAHTPDGLENALKASRPFTSKNLCCVFG----CGGDRDRGKRSQMAAIA 412

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V ++  +            +   +P                   +    GDVV+
Sbjct: 413 ARLADRVVVTSDNPRTEDPQQILADVVAGIPEGTTCTVEVDRAVAIALAIAEAAPGDVVL 472

Query: 449 V--KS 451
           V  K 
Sbjct: 473 VAGKG 477


>gi|328472000|gb|EGF42877.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           10329]
          Length = 485

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 150/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S +AD ++  + Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYGFSDDADVRIENYHQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I+     +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTINA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|325856508|ref|ZP_08172197.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|327313073|ref|YP_004328510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
 gi|325483477|gb|EGC86450.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola CRIS 18C-A]
 gi|326944914|gb|AEA20799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           denticola F0289]
          Length = 443

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++    ++             +IG  L L       ++ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFTNAGYD----AGLAGNIGNSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +      +   
Sbjct: 157 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTAEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +   +S  K   +   + + +   E+            +   
Sbjct: 213 WNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYKIEK-----PEPFNMEQEDL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+L  F   E R               I++S
Sbjct: 268 SLTGRHNIYNSLAAGIASDISGIKKENIRKSLGDFPGVEHRL---EKVCKVAGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMRT-------PTILILG-----GKDKGNDYNAIKDLVKEKCTGIVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L +      I V  + +M             GD V++    +S         
Sbjct: 373 L-GADNRKLHENFDGLGIPVRDTHSMKDCVAACTEMAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGDQFKSLVRAL 443


>gi|313609852|gb|EFR85279.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diamino
           pimelate-D-alanyl-D-alanyl ligase [Listeria
           monocytogenes FSL F2-208]
          Length = 85

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLAL---KDALPRSIHVHYSETMDGLFLFIQSSLVD 443
             H + AEVL    I  V+L G  + A     +A      VH+ +T + L   + + +  
Sbjct: 2   KLHQESAEVLESDTIEKVFLYGDAMKAFGEVAEAKIGQGKVHHFDTKESLETALLAEIKG 61

Query: 444 GDVVVVKSSNSCGFYRLINLLL 465
            + ++VK S   G   ++  L+
Sbjct: 62  NEWILVKGSYGMGLKDVVENLI 83


>gi|309804760|ref|ZP_07698824.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
 gi|308165870|gb|EFO68089.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 09V1-c]
          Length = 460

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 136/424 (32%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+     N+D      +  
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN---ILE 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +L    + +F +           +    Q+  E+              G H  QN L
Sbjct: 238 QELSLNKAHVVTFSEESTQADYYIGEQYLESQADHEIMK-----ISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|253564350|ref|ZP_04841807.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|251948126|gb|EES88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_2_5]
 gi|301161369|emb|CBW20909.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 638R]
          Length = 444

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 121/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEEKHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IAV+  I P HL  +   ++   +AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K + +   +   +       +   +     +   
Sbjct: 213 WNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFNMEQEQL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGEQFKKYVREL 444


>gi|161526010|ref|YP_001581022.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|189349273|ref|YP_001944901.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343439|gb|ABX16525.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia multivorans
           ATCC 17616]
 gi|189333295|dbj|BAG42365.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 513

 Score = 70.3 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 80/481 (16%), Positives = 153/481 (31%), Gaps = 52/481 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  A+ +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLRAGDVFVAYA---VDGADNRAFIADALARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  +  +    V  +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAATPNAPVA-LAVPALDQLAGEIASGWYGDPSDGLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++ +  A IG+  +  G+P  L                             
Sbjct: 125 TQWIAAALTALHQPCAIIGTLGS--GMPGHLVPTGFTTPDAPQLQRSLAQLRDGGAQAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      E    A               +N
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFEAY-EAAKAKLFAWRGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKN-----ADFQLRKWKQCSEQSWMEVQLQGKSM 281
            DD+    L  K         Y  G ++       +      +  +  +   ++      
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVAIDVRATATGTAFRLRSSWGDA 301

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  ++   P  GR +R    L      +
Sbjct: 302 DVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIARLEPVNGRMQRLGGRLQNDEPLV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    GR I + G     G    +    L   ++    
Sbjct: 362 VID-YAHTPDALEKTLDALRPIAVARGGRLICMFG----CGGDRDATKRPLMGAIAERLA 416

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +         E      L         DVVV+  K
Sbjct: 417 DDVVVTSDNPRSEDPQAIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|312876350|ref|ZP_07736335.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796844|gb|EFR13188.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 428

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 82/423 (19%), Positives = 142/423 (33%), Gaps = 47/423 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             AV K   LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+ 
Sbjct: 34  DEAVDK-VQLVVVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTN 89

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L    +          +IG+P              + E+    L  I+
Sbjct: 90  GKTTTTTLVGEILKKQYEDV----VVCGNIGLPFIDTIETSSKNTIFVLEISSFQLETIK 145

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L 
Sbjct: 146 YF----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNITRDLI 201

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                L    +  F K+K+    +   ++ +     E + Q    +      G H  +N 
Sbjct: 202 ----GLAKGNVIVFSKNKSQFENMVFVEKDTIYFTFEGKTQEVMKKDEIFIPGEHNLENA 257

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +        + DT  + L  F   E R                ++S   N  + + A
Sbjct: 258 LAAISCTLPFGIEKDTIEQVLKTFRGVEHRI---EFVAEINGIKFYNDSKGTNTDAAEKA 314

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +           G            G          A +++   +  V+L G     +  
Sbjct: 315 LRAFESPIILIAG------------GYDKGESFEKFASLVAK-KVKKVFLLGQTKHKIAS 361

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
            L +    +     T+            +GD+V++    +S             F   +N
Sbjct: 362 ELEKIGYKNFELVSTLKEAVRKSFECAQNGDIVLLSPACASWDMFENYEQRGRMFKEYVN 421

Query: 463 LLL 465
            LL
Sbjct: 422 ELL 424


>gi|116512675|ref|YP_811582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. cremoris SK11]
 gi|123125372|sp|Q02X53|MURE_LACLS RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|116108329|gb|ABJ73469.1| UDP-N-acetylmuramyl tripeptide synthase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 483

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 66/477 (13%), Positives = 146/477 (30%), Gaps = 65/477 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++   ++  A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTKDTLFFA-KGLNFK-KEYLTD-LE--A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A       ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAANFYKFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSS-----------IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIF 165
                 L              + T      + + +  P       +    +   +   + 
Sbjct: 125 YFAKSILDKMNGGKTALLSTAQTTLDGQNYFKSELTTPESLDLLEMMAKALENGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
           E+  S         + +   + V   I+P H+       +E+    K ++ +        
Sbjct: 185 EV--SSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSR---YF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K + +   I   +    S+N   + +     ++ S             
Sbjct: 240 VANAEMNHFAIIKEELNERKIPHAFYGADSENKIIESKGLHFVTDGSVSGEFDIRLLGRF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                         +     +I        +                      G    ID
Sbjct: 300 NQENALATALATKALGASFENIRQGLASAIVPGRMELL-----------TAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++N       +  +++  +  H  G+   VLG     GE  +     + E     N+  
Sbjct: 349 YAHNG-----LSLENLVEVVEDHHAGQLFLVLGSTGNKGESRRKDFGQVIENHPRLNV-- 401

Query: 404 VWLSG----FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVD-GDVVVV--KS 451
           +  +      +   + D +    S  + +    +       S   +  D V++  K 
Sbjct: 402 ILTTDDSNRENPKTIADEIASFVSRELDFELDREFAIKKAISKTQNSDDAVIIAGKG 458


>gi|222823643|ref|YP_002575217.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
 gi|222538865|gb|ACM63966.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Campylobacter lari RM2100]
          Length = 466

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 131/349 (37%), Gaps = 39/349 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDF 162
              K  II IT S GKT+ K  L   L    K Y    S N  +G V      +  + + 
Sbjct: 146 DNPKLKIILITASFGKTSIKNFLYEVLKDEFKCYKTPRSVNTFMGIVKDINENLENNTEI 205

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I E G     +I  +T  + P I ++  I  AHL  F   + I +AK            
Sbjct: 206 YIVEAGAREQNDILEITEFLNPQICIVGEIGLAHLEYFKTQDNIRNAK------------ 253

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     + LK+K          +  +++  D  L   +   E    +++L     +
Sbjct: 254 ---------LQALKSKRLEKYFLHSSTLYENEFYDDCLSDVRASLEGLDFKIRLDDNIYD 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              + +G   A N+ + + +   L   ++  IK++S     E R +     +++    +I
Sbjct: 305 FHANLLGAFNAYNISVCILLAYYLGIKIEDIIKSISNLKAVEHRLQ----VISKEPKFII 360

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+ +N N   M  +  +        +GR++ V   + E+   ++  +I L ++++     
Sbjct: 361 DDGFNGNFKGMSQSYELCKSY----QGRKVLVTPGIVEV---NEEENIKLCKIINEC-FD 412

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V ++      +   L + I    +  +    L   +     +GD+++ 
Sbjct: 413 FVIITSEANSTI---LQKHITLDFYVLKEKSQLVQALSKLTQNGDLILF 458


>gi|121535920|ref|ZP_01667716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
 gi|121305491|gb|EAX46437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosinus
           carboxydivorans Nor1]
          Length = 449

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 88/321 (27%), Gaps = 39/321 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +    + E+    L          RP IA +  + P HL     ++   + K  IF    
Sbjct: 154 EHGIVVAEISSFQL----EGVVDFRPRIAAVLNLTPDHLDRHRSLDNYKAMKERIFRNQR 209

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + LNYDD     +  ++         S     +   +L    +  +++ +      
Sbjct: 210 PDDYLVLNYDDPLVRDMAERAP--------SQAVFFSRKARLSTGARLEDETIVMCWEGK 261

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +    A N+   L    +       A    +V     G   R         
Sbjct: 262 TEAICPVKEMKLFGAHNIENALAASCVAFLAGADAGAIGAVLRTFMGVEHRIEPVAEIRG 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP S   A+           G  I + G     G   ++   +  E+   
Sbjct: 322 VRYYNDSKATNPESAIKALEAFD-------GHIILIAG-----GRDKKTDLTEFMELAKQ 369

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
             + H+ L G        A       ++H  +  +              VV++    +S 
Sbjct: 370 -KVDHLILLGEAKERFYQAAAAHGVTNIHLVDKFEDAVTLAYRLARPPQVVLLSPACASY 428

Query: 453 --------NSCGFYRLINLLL 465
                       F  L+  L 
Sbjct: 429 DMFNNYEERGRVFKELVRQLK 449


>gi|265764983|ref|ZP_06093258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
 gi|263254367|gb|EEZ25801.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_16]
          Length = 444

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 121/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEEKHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IAV+  I P HL  +   ++   +AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K + +   +   +       +   +     +   
Sbjct: 213 WNDDPIIKRELDKHGIRAHLYPFSAIKEEGSIAYVEDHEV-----VITEPIAFNMEQEQL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKEDIRKALSDFQGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGEQFKKYVREL 444


>gi|257066693|ref|YP_003152949.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
 gi|256798573|gb|ACV29228.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 129/398 (32%), Gaps = 36/398 (9%)

Query: 69  VVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVA---ARLRSKATIIAITGSVGKTTTK 123
           + + D    + S  IP     V  +      ++      RL  +A IIA TG+ GKT+T 
Sbjct: 53  ICDYDFEFVVKSPGIPPRDEVVKKLREKYEIISDIELSFRLFPEAKIIATTGTNGKTSTT 112

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L+   +          +IG  +              EL    L ++       +
Sbjct: 113 SMISHILNESGR----KAISVGNIGEGILWQMYENPSAIFSCELSSFQLHDVS----TYK 164

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIA IT I   H+      ++  ++K  I    +    + +N++D      KA   A  
Sbjct: 165 PHIACITNITEDHIDWHGSFDDYINSKLNICRKQDSGDFLVINHEDPILVDHKADFRAKV 224

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               +S  +  +    L+      +     +             IG H  +N++  +   
Sbjct: 225 Y--EFSSKEEVDRGAYLKGSSIFFKDQGKNI---KLMDVDDLSIIGRHNYENLMAAILAC 279

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            I    ++  I+    F        R     +     + ++S   N  S   AI    + 
Sbjct: 280 FIYGVSIEDIIRGSKSFKSI---EHRLEFVTDIRGIRVYNDSKGTNVDSSVKAIQSFDKP 336

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SI 422
                G            G      +    +    +    + + G     L        +
Sbjct: 337 IVIIAG------------GYDKNIDYSPYIKEFKKHG-KLMVIIGQTTDKLASLCEAYKV 383

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
           +   ++ M+        +L +GD+ ++  +S S G YR
Sbjct: 384 NYKKAKDMEDAVKISFDNLEEGDIFLLSPASASWGMYR 421


>gi|294778000|ref|ZP_06743434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
 gi|294448058|gb|EFG16624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           vulgatus PC510]
          Length = 444

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNV----GLAGNIGQSLAYQVAECNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTPDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +             ++ +    +     +   
Sbjct: 214 WNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAY-----VEQDKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      ++     +   +AL  F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     + + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCTGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D   +  + V   ++M             G+ V++    +S         
Sbjct: 373 YMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGEQFKECVRNL 444


>gi|330811581|ref|YP_004356043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379689|gb|AEA71039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 448

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 122/348 (35%), Gaps = 30/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAI+GS  K+T   ++    ++  K      +   ++G P     +  DV+
Sbjct: 103 FARNAKAPIIAISGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  +SG+     AK  IF G  +  
Sbjct: 158 LYVMELSSFQLETTDHLGA----EVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +         +SFG     DF+    ++ + + ++  + Q    
Sbjct: 214 FNRQDA--------LTRPLLGEGMPCWSFGLGVP-DFKGFGLREENGEKYLAFEFQNLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F   E R +  R          
Sbjct: 265 VRELKIRGAHNQANALAALALGHAVGLPFDAMLSALRTFAGLEHRCQWVRDLDGVA---W 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    EG+ + + G   + G   +     +A      N 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GADFKDLRDPVA-----ANC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G     +  AL  ++ +    ++D      ++    GD V++
Sbjct: 373 RAVVLMGRDRELIAQALGDAVPLVRVGSLDEAVQQCRALAHPGDAVLL 420


>gi|88801288|ref|ZP_01116816.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
 gi|88781946|gb|EAR13123.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Polaribacter irgensii 23-P]
          Length = 460

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 116/356 (32%), Gaps = 35/356 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + ATI+ ITGS GKTTT  ++   L               +IGV       
Sbjct: 110 EFAAKY---TSATIVGITGSNGKTTTTMLVHRILKDAGLNV----GLAGNIGVSFAQQVA 162

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
            V  +  + EL    L  I   +      IA++T I P HL  +    E+  ++K  I +
Sbjct: 163 EVSHENYVVELSSFQLDGIEKFSSH----IAILTNITPDHLDRYEYDFEKYVASKFRITQ 218

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +++  +  + DD        +         +S  K       L+        +   ++
Sbjct: 219 NQKESDYLIYDADDIAINTWLKQHKIKAKLVPFSLKKELAYGAFLKGNNIIININKETIK 278

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +            G H  +N +       +L    +   ++L+ F   E R         
Sbjct: 279 MPIS----TITVKGKHNVKNTMAATMAAQLLQIRKEAIKESLANFEGVEHRL---ENVAK 331

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  + + +    G            G    + + DL  +
Sbjct: 332 VKGVEYINDSKATNVNATFYALECMDRQTVWIVG------------GVDKGNDYNDLLPL 379

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVVVV 449
           +    +  +   G     +KD     + +   ET   +           DGD V++
Sbjct: 380 VRE-KVKAIVCLGVDNQKIKDMFGNVVDI-VVETAGAEEAVKVAHKLAEDGDAVLL 433


>gi|292558100|gb|ADE31101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Streptococcus suis GZ1]
          Length = 398

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 76/231 (32%), Gaps = 29/231 (12%)

Query: 24  QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
               + +S DSR+++P   FFA KG  +   +F+  A++ G    V   D       + I
Sbjct: 32  DVQFDALSYDSRTVSPTTLFFA-KGLAFK-KEFLEKAIEAGLDFYVSEIDY-----EVGI 84

Query: 84  PVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           P   V D+  A++ +A+      + +  ++A TG+ GKTT        L   KK      
Sbjct: 85  PAIIVHDIKQAMSLIAMDFHGHPQKQLKLLAFTGTKGKTTAAYFAFNILKQSKKPAMLST 144

Query: 142 SYNNHIGV----------------PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 G                  +    +   +   I E+  S    +    + +   
Sbjct: 145 MNTTLDGKTFFKSTLTTPESLDLFAMMAEAVKNGMTHLIMEV--SSQAYLVKRVYGLTFD 202

Query: 186 IAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           + V   I+P H+        E+    K  + +                 + 
Sbjct: 203 VGVFLNISPDHIGPIEHPTFEDYFYHKRLLMDNSRAVIVNAGMDHFEVVKE 253


>gi|255971128|ref|ZP_05421714.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
 gi|255962146|gb|EET94622.1| cytoplasmic peptidoglycan synthetase [Enterococcus faecalis T1]
          Length = 480

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 2   TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 59

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 60  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 115

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 116 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 174 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 234 TAQQQKVPAIVYGSQPASEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 293

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 294 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 348

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 349 NLLTFVRE--EHSDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 403

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 404 PAKICQEIQAHITKEMPVYTILDRGEAIAHALSLSTTADDAIVLAGKG 451


>gi|15673788|ref|NP_267963.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis Il1403]
 gi|13878593|sp|Q9CEN1|MURE_LACLA RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|12724832|gb|AAK05904.1|AE006410_6 UDP-MurNac-tripeptide synthetase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407294|gb|ADZ64365.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Lactococcus lactis subsp. lactis CV56]
          Length = 483

 Score = 70.3 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 65/477 (13%), Positives = 144/477 (30%), Gaps = 65/477 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +      +   + +S DSR       FFA KG ++   +++   ++  A
Sbjct: 16  NFREISSA-GEYYFNWPKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD-LE--A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A +     ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAASFYDFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSS-----------IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIF 165
                 L              + T      + + +  P       +    +   +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKALTNGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
           E+  S         + +   + V   I+P H+       +E+    K ++ +        
Sbjct: 185 EV--SSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSR---YF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K +     I   +    S+N   + +     ++ S             
Sbjct: 240 VANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFDIRLLGRF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                         +   + +I        +                      G    ID
Sbjct: 300 NQENALATALATKALGASLENIHDGLALAVVPGRMELL-----------TAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++N       +  +++  +  H  G+ + VLG     GE  +     + E      +  
Sbjct: 349 YAHNG-----LSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIE--KHPRLDV 401

Query: 404 VWLSG----FHVLALKDALPRSI-HVHYSE-TMDGLFLFIQSSLVD-GDVVVV--KS 451
           +  +          + D +   +      E   +       S      D V++  K 
Sbjct: 402 ILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKG 458


>gi|304440543|ref|ZP_07400430.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304371021|gb|EFM24640.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 462

 Score = 69.9 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 71/397 (17%), Positives = 140/397 (35%), Gaps = 37/397 (9%)

Query: 64  GAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA LV+    ++ D      ++   +  VD     L  L    ++      +AI+G+ GK
Sbjct: 70  GADLVIYTDAISLDNEELREAIKQKIDIVDRA-SFLGALMKNYKIS-----MAISGTHGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+T  M++  + ++ +    +          +    +  + +  + E        +++  
Sbjct: 124 TSTTSMVSEIIRNLPERPTILLGGKLDD---INGNVLVGNREIMLTEACEYKANVLKYF- 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P  AVI  I   HL  F  +E I +      + L+   T+ LN DD +   L+ + 
Sbjct: 180 ----PTTAVILNIDEDHLDYFDNMEHIVNTFKGYADNLKPGSTLILNIDDPYVRELQNRD 235

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHHGIGYHMAQNML 297
           +     T+ +FG   +AD+  +  K C +               +V+   +G H  +N L
Sbjct: 236 N----TTVVTFGVENDADYTAKNIKFCEDGYPEYDLYYKGSLIGKVILSVLGIHNIKNSL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK--- 354
             +            AI  +  +     R +          F           AS+    
Sbjct: 292 AAIACAHENNISFKDAIDGIHSYKGVHRRLEFKGMFGGAKVFDDYAHHPTEILASLHAIK 351

Query: 355 --AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HV 411
                ++     PH   R   +L    +    S++ +  + ++ +          G  H 
Sbjct: 352 RGCERNLYCIFQPHTFTRTKILLDSFSK--SFSEADYTIITDIYAAREKD----YGDIHS 405

Query: 412 LALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVV 447
             L DA+ ++     Y ET   +  F++ +L  GD V
Sbjct: 406 KTLVDAINQNKDKALYIETFRDIVKFLKDNLRPGDTV 442


>gi|325132966|gb|EGC55643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M6190]
 gi|325138954|gb|EGC61504.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis ES14902]
          Length = 445

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 124/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +      + +      
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTPLRDALVGK------ 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|34540387|ref|NP_904866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
 gi|62900688|sp|Q7MWM5|MURD_PORGI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34396700|gb|AAQ65765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Porphyromonas
           gingivalis W83]
          Length = 450

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 124/389 (31%), Gaps = 33/389 (8%)

Query: 67  LVVVNTDMVASIG--SLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            +++    +        + P+    V   +G ++++  A R  + A ++ ITGS GKTTT
Sbjct: 62  AIILEAKEIIKSPGIPDTAPIIRQAVAKEIGIVSEIEFAGR-YTDAFMVCITGSNGKTTT 120

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L   L               ++G  L          + + EL    L       +  
Sbjct: 121 TMWLYHTLCKAGLDV----GLAGNVGFSLARQVAYDPHPYYVIELSSFQLD----NMYDF 172

Query: 183 RPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           R ++A++  I P HL  +    E  A AK  I    +         DD F     A+   
Sbjct: 173 RANVAILLNITPDHLDRYDHRFELYAEAKMRITRNQQPEDCFIYWEDDPFISRWVAEH-- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  +  F      D       + +E   M +       E +    G H   N + T  
Sbjct: 231 PPVARLLPFAMEARTDNTTAWINEKNELVVMNLNSPFVMDEELLALSGMHNRHNAMATAI 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               +    +   +AL  F     R ++            I++S   N  S   A+  + 
Sbjct: 291 AAKAMDIKNEAIREALQDFKNVPHRLEKIARVKGVD---YINDSKATNVNSTWYALESMK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                   R I +LG     G    + + D+ E L L  +  +   G     L       
Sbjct: 348 T-------RVILILG-----GTDKGNDYTDI-ENLVLSKVDGLIFLGIDNEKLHKFFDGK 394

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  +  + +M             GD V++
Sbjct: 395 ISRIADACSMHEAVSLAYKMASKGDTVLL 423


>gi|153839043|ref|ZP_01991710.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|260363428|ref|ZP_05776276.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
 gi|31076799|sp|Q87SG3|MURC_VIBPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149747471|gb|EDM58419.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus
           AQ3810]
 gi|308114671|gb|EFO52211.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           K5030]
          Length = 485

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 149/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 62  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 108

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S +AD ++  + Q   +
Sbjct: 217 FIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYGFSDDADVRIENYHQEGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 273 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      +  G   +  V+         ++  
Sbjct: 333 HLGEFDTGNGHAMLVDDYGHHPTEVDVTIKA----ARSGWQDKRLVMIFQPHRYSRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     V   +   ++ L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 447 VLANVIQDGDLIL 459


>gi|315221960|ref|ZP_07863871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
 gi|315188926|gb|EFU22630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           anginosus F0211]
          Length = 450

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA      IPV         L  L       S A II ITGS GKTTT  M+   L
Sbjct: 85  DNPMVARALEKKIPVI----TEVELAYLI------SDAPIIGITGSNGKTTTTTMIAEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +         D  + EL    L  I        P IAVI
Sbjct: 135 TAGGQN----GLLSGNIGFPASQVATTATQNDTLVMELSSFQLMGIE----TFHPEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E   +AK  I + + K+  + LN++ +  + L AK+ A  +    +
Sbjct: 187 TNLMPTHIDYHGSFENYVAAKWNIQKNMSKSDFLILNFNQTLAKELAAKTQATVVPFSTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      E + +  + +           G H  +N L T+ +  +   +
Sbjct: 247 ----------EKVDGAYLEGNMLTFRGEPVMAADELGVPGSHNVENALATIAVAKLRGIE 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQVIKETLAGFGGVKHRL---QYVGEINHVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  +  +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDIQ--GVKKMVILGESAARVKRAADKAGVSYMDAA 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 401 DVKDATQKAFAEAQAGDIVLL 421


>gi|254880788|ref|ZP_05253498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|319639798|ref|ZP_07994528.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
 gi|254833581|gb|EET13890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_3_47FAA]
 gi|317388615|gb|EFV69464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_40A]
          Length = 444

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNV----GLAGNIGQSLAYQVAECNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTPDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +             ++ +    +     +   
Sbjct: 214 WNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAY-----VEQDKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      ++     +   +AL  F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     + + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCTGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D   +  + V   ++M             G+ V++    +S         
Sbjct: 373 YMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGEQFKECVRNL 444


>gi|24379029|ref|NP_720984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           mutans UA159]
 gi|30316024|sp|Q8DVE3|MURD_STRMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24376923|gb|AAN58290.1|AE014899_9 putative D-glutamic acid adding enzyme MurD;
           UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Streptococcus mutans UA159]
          Length = 451

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 132/387 (34%), Gaps = 39/387 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V    +     + +     +  +    +LA      S+A II ITGS GKTTT  
Sbjct: 72  AFAYMVKNPGIPYTNPMVVRALEKNIPVITEVELAYLI---SEAPIIGITGSNGKTTTTT 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           M+   L+   ++       + +IG P +   +   + D  + EL    L           
Sbjct: 129 MIADVLNHAGQS----ARLSGNIGFPASEVAQPVTEKDILVMELSSFQLMGTE----SFH 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVIT + P H+      E    AK  I + + K   + LN++    + L  ++ A  
Sbjct: 181 PHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTKEDFLVLNFNQDLAKDLANQTQA-- 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                   K      + +      +   +  + Q           G H  +N L T+ + 
Sbjct: 239 --------KIIPFSTKEKVDGAYLDGQMLCFKGQAIMSASELGVPGSHNVENALATIAVA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     +   + L  F   + R    +   N       ++S + N  +          +
Sbjct: 291 KLSGVSNEAIRETLIHFGGVKHRL---QSLGNIAGVKFYNDSKSTNILA------TQKAL 341

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     + I + G     G    +   +L   +    +  + + G     LK A  ++  
Sbjct: 342 SGFDNSKVILIAG-----GLDRGNEFDELVPDIK--GLKKMIILGESAPRLKHAAVQAGV 394

Query: 424 VHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +  ++ +             GDVV++
Sbjct: 395 TYLNAKDVAQATRIAFQEASPGDVVLL 421


>gi|290580950|ref|YP_003485342.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
 gi|254997849|dbj|BAH88450.1| putative D-glutamic acid adding enzyme [Streptococcus mutans
           NN2025]
          Length = 451

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 132/387 (34%), Gaps = 39/387 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A   +V    +     + +     +  +    +LA      S+A II ITGS GKTTT  
Sbjct: 72  AFAYMVKNPGIPYTNPMVVRALEKNIPVITEVELAYLI---SEAPIIGITGSNGKTTTTT 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           M+   L+   ++       + +IG P +   +   + D  + EL    L           
Sbjct: 129 MIADVLNHAGQS----ARLSGNIGFPASEVAQPVTEKDILVMELSSFQLMGTE----SFH 180

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH+AVIT + P H+      E    AK  I + + +   + LN++    + L  +     
Sbjct: 181 PHMAVITNLMPTHIDYHGSFENYIEAKWNIQKNMTEKDFLVLNFNQDLAKDLANQ----- 235

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                +  K      + +      +   +  + Q           G H  +N L T+ + 
Sbjct: 236 -----TQTKIIPFSTKEKVDGAYLDGQMLCFKGQAIMSASELGVPGSHNVENALATIAVA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     +T  + L  F   + R    +   N       ++S + N  +          +
Sbjct: 291 KLSGVSNETIRETLIHFGGVKHRL---QSLGNIAGVKFYNDSKSTNILA------TQKAL 341

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           S     + I + G     G    +   +L   +    +  + + G     LK A  ++  
Sbjct: 342 SGFDNSKVILIAG-----GLDRGNEFDELVPDIK--GLKKMIILGESAPRLKHAAVQAGV 394

Query: 424 VHY-SETMDGLFLFIQSSLVDGDVVVV 449
            +  ++ +             GDVV++
Sbjct: 395 TYLNAKDVAQATRIAFQEASPGDVVLL 421


>gi|309807734|ref|ZP_07701668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168994|gb|EFO71078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 01V1-a]
          Length = 460

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 136/424 (32%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+     N+D      +  
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN---ILE 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  +L    + +F +           +    Q+  E+              G H  QN L
Sbjct: 238 QELSLTKANVVTFSEESTQADYYIGEQYLESQADHEIMK-----ISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|297588289|ref|ZP_06946932.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
 gi|297573662|gb|EFH92383.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ATCC 53516]
          Length = 441

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 131/407 (32%), Gaps = 50/407 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D    + +  + +  V D+     +LA          I+AITG+ GKTTT  ++T  L+ 
Sbjct: 70  DNPVILKANELNIEVVSDL-----ELAQRIFE--DIKIVAITGTNGKTTTTSLMTKMLND 122

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +    IG+     G+   +     D  + + E     L      T   +P  + I  I
Sbjct: 123 SGRKAISIGNIGV--GMLWEIYNSDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINI 175

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+     ++   +AK  + +  ++     LN DD ++E  K  + +       S   
Sbjct: 176 TPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVLNVDDEYYEECKKFTKSNVYDVSTS--- 232

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               D +   + +     + +              IGYH  QN+L  + +  ++  + D+
Sbjct: 233 ---TDVKKGSFIKDDSIYFSDSDCNKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDDS 289

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E R                ++S   N  +   AI    +         +
Sbjct: 290 IRQTLMSFSGVEHRL---EFVRELSGVKYYNDSKGTNVDASVKAIESFDK--------NV 338

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETM 430
            +L      G   +   +D   +        + L G      +         +    + M
Sbjct: 339 IILA-----GGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEKKAREYGFGNIFLVDDM 393

Query: 431 DGLFLFIQSSLVDGDVVVVK-SS-----------NSCGFYRLINLLL 465
                        GDVV++  +S               F  L+N L 
Sbjct: 394 KQAVTQANKIAESGDVVLLSPASASWGMYNNYEERGNEFKELVNNLR 440


>gi|150003965|ref|YP_001298709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
 gi|149932389|gb|ABR39087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           vulgatus ATCC 8482]
          Length = 444

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 117/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNV----GLAGNIGQSLAYQVAECNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTPDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +             ++ +    +     +   
Sbjct: 214 WNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAY-----VEQDKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      ++     +   +AL  F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     + + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCTGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D   +  + V   ++M             G+ V++    +S         
Sbjct: 373 YMGLHNEKLHDFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGEQFKECVRNL 444


>gi|28897235|ref|NP_796840.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28805444|dbj|BAC58724.1| UDP-N-acetylmuramate-alanine ligase [Vibrio parahaemolyticus RIMD
           2210633]
          Length = 490

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 70/433 (16%), Positives = 149/433 (34%), Gaps = 54/433 (12%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDD 90
           R ++     F         GH     A  V+K A +VVV+T +      + +     +  
Sbjct: 67  RLVSKGATVFI--------GH----QASNVEK-ASVVVVSTAINEENPEVMAARELRIPI 113

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 114 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 165

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P ++++T I   H+  +    E +   
Sbjct: 166 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQT 221

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   +  DD     L  +      + + ++G S +AD ++  + Q   +
Sbjct: 222 FIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYGFSDDADVRIENYHQEGQQ 277

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +    + D  +KA++       R  
Sbjct: 278 GKFTVVRKGRANLDITLNIPGRHNALNASAAIAVATEDDIEDDAILKAMAGTQGTGRRFD 337

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      +  G   +  V+         ++  
Sbjct: 338 HLGEFDTGNGHAMLVDDYGHHPTEVDVTIKA----ARSGWQDKRLVMIFQPHRYSRTRDL 393

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     V   +   ++ L  
Sbjct: 394 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKVDPIFVPEIEQLPS 451

Query: 436 FIQSSLVDGDVVV 448
            + + + DGD+++
Sbjct: 452 VLANVIQDGDLIL 464


>gi|312959055|ref|ZP_07773574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
 gi|311286825|gb|EFQ65387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           fluorescens WH6]
          Length = 448

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 132/375 (35%), Gaps = 42/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AI+GS  K+T   ++     +  K      +   ++G P     +  +V+
Sbjct: 103 FARHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDEVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  +SG+     AK  IF G ++  
Sbjct: 158 LYVMELSSFQLETTHDLGA----EVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQFV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++         ++FG  K  DF+    ++ + + ++  + Q    
Sbjct: 214 VNRQDA--------LSRPLIGEGMPCWTFGLGKP-DFKAFGIREENGEKYLAFEFQNLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + +L  F   E R    +   +    + 
Sbjct: 265 VRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRAFGGLEHRC---QWVRDLDGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    +G+ + + G   + G   +     +AE     + 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIDGKLVLIAGGDGK-GADFKDLKAPVAE-----HC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     +  AL  ++    + ++D      ++    GD V++    +S      
Sbjct: 373 RAVVLMGRDADLIAAALGDAVPQVRATSLDDAIAQCKALAQPGDAVLLSPACASFDMFKN 432

Query: 453 ---NSCGFYRLINLL 464
                  F R +  L
Sbjct: 433 YEERGQLFARAVEAL 447


>gi|256821912|ref|YP_003145875.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
 gi|256795451|gb|ACV26107.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kangiella koreensis
           DSM 16069]
          Length = 444

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 43/369 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IAITGS GK+T  +++   +++  K          +IGVP     + ++ D+   EL
Sbjct: 107 LPVIAITGSNGKSTVTDLVGELINASGK----KALVGGNIGVPALDL-LKLEGDYVALEL 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  + P  A +  ++  HL  +   +E   AK  I+           + 
Sbjct: 162 SSFQL----ESTRSLEPVAATVLNVSEDHLDRYKNYQEYIDAKRSIYAKARTCLVNADDE 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +            A   + I  FG S N+D                +   G  +  +   
Sbjct: 218 NTW-------IKSAESGQNILRFGLSNNSDKIDWAVDFE----TCTIMHDGNEILKLDEL 266

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               +   + + + +  +  A+++     L      +G   R +    +   T I++S  
Sbjct: 267 TLQGIHNALNVAVALALVDIAEIELTQAVLDAAKSYQGLPHRSQLVAIKDGITFINDSKA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +    ++ +    P      I + G     G+   +    L E++    +  V   
Sbjct: 327 TNVGAT---VAAIHSFEPQFGKNIILIAG-----GDAKGADLSSLQEIIKET-VKAVVCF 377

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSC 455
           G    A+    P          ++            GD+V++    +S            
Sbjct: 378 GKDAPAIAKLAPA--KTQLVSNLEEAVRIAYEQAQKGDLVLLSPACASLDMFANYMQRGE 435

Query: 456 GFYRLINLL 464
            F  L+  L
Sbjct: 436 QFAHLVEAL 444


>gi|323466805|gb|ADX70492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           helveticus H10]
          Length = 459

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 124/413 (30%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVKKAEELNIPII--TEPEIALSC--------SDAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                  HL      E   +AK  +            NYD      + AK   +    + 
Sbjct: 192 VDIYNNVHLDYHKTFENYVNAKLNVTRTQNSDDYFIANYDQKD---ILAKEKEVTPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F ++ ++       +    Q       +     V     G H  QN L+ + I  ++ A
Sbjct: 249 TFSETDSSADYFIGDEYLESQ------NEKIMKIVDIKLPGIHNLQNSLVAIAISKVMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D     LS F   + R            +    +       S    I   +   P  +
Sbjct: 303 DNDDIAAVLSTFTGAKHR----------LQYVTTLDGRKVYNDSKSTNIEAATVAIPSFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 353 EPEVLIAG-----GLDRGFLFDDLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+              DV++     +S             F + +  L  +
Sbjct: 407 VNTLQEAVPRAYELSEPDDVILFSPACASWDQFRTFEDRGDYFVKFVKELKTK 459


>gi|303235636|ref|ZP_07322243.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
 gi|302484083|gb|EFL47071.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           disiens FB035-09AN]
          Length = 453

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 120/372 (32%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + ++ ITGS GKTTT  ++     +             +IG  L L       ++ + E
Sbjct: 111 NSKMVCITGSNGKTTTTSLIYHIFKNAGYDV----GLAGNIGKSLALQIAEEPHEYYVIE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E+ A AK  I +   K  +   
Sbjct: 167 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDFQFEKYADAKMRIIQNQTKEDSFIY 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     ++  +S  K K +   + + +   E             +   
Sbjct: 223 WNDDPVIKKELEKFDVKAVQYPFSELKEKGSIGYIEEGQYILE-----TPTPFNMEQEDL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     +   K+LS F   E R               I++S
Sbjct: 278 SLTGKHNIYNSLAAGLASNISGITKENIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I ++G     G+   + +  + E++    +  V+
Sbjct: 335 KATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYTPIKELVKEKCVGLVY 382

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L +      I V  + +M             GD V++    +S         
Sbjct: 383 L-GADNKKLHENFDELGIPVRDTHSMKECMDACYEMAKSGDTVLLSPCCASFDLFKNMED 441

Query: 453 NSCGFYRLINLL 464
               F  L   L
Sbjct: 442 RGEQFKTLARAL 453


>gi|325264801|ref|ZP_08131530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
 gi|324030093|gb|EGB91379.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           D5]
          Length = 453

 Score = 69.9 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 101/346 (29%), Gaps = 40/346 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            K Y        +IG P T   +   D    + E+    L       H  RP ++ I  +
Sbjct: 133 MKNYRESTFVVGNIGNPYTSIALATRDDSVIVAEMSSFQL----ESIHTFRPKVSAILNV 188

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           +P HL+    +E    AK  I E   +  T  LNY+D        K +A           
Sbjct: 189 SPDHLNRHHTMEAYIDAKLNIAENQTEEDTCVLNYEDEMTRGFAEKVNAKV--------L 240

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
             ++  +L K     + + +    +          +      N    +    +  A    
Sbjct: 241 YFSSQRKLEKGIYMEDGNIICRMDETPVKVCHIDELKLLGTHNHENVMAAAGMAAAYGVP 300

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                      +G   R      +      ++S   NP +    I  + + +    G   
Sbjct: 301 MEIIQRTVKEFQGVEHRIEFVAEKDGVAYYNDSKGTNPDAAIKGIQAMKRPTLLIGG--- 357

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETM 430
                    G   +S + +  +      +  + L G     +K+   R     +  ++T 
Sbjct: 358 ---------GYDKESSYDEWIQ-AFDGKVKKLVLLGATKEKIKETAERLGFRDIILTDTF 407

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +            GD V++    +S             F  L+N L
Sbjct: 408 EEAVDTCVKYARPGDAVLLSPACASWGMFKNYEERGDKFKELVNQL 453


>gi|256820163|ref|YP_003141442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
 gi|256581746|gb|ACU92881.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Capnocytophaga
           ochracea DSM 7271]
          Length = 444

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 105/355 (29%), Gaps = 33/355 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A          I+ ITGS GKTTT  +                    +IG        
Sbjct: 94  EFASQYTDSL---IVGITGSNGKTTTTLLTYHIFKEAGLQV----GLGGNIGYSFAELVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             +  + + E+    L  I        PHIAV+  I P HL  +    E    +K  I  
Sbjct: 147 TKNPPYYVLEISSFQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYIDSKFRIAM 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +   +  + DD       +          +S  K       L+  K       M   
Sbjct: 203 NQTENDYLIYDADDEVITQWLSTHTIKSKLIPFSIEKELPQGAFLKDNKIYI----MLEN 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +         G H  +N +       ++    ++  ++L  F     R +  +    
Sbjct: 259 QTTEIDVEEISLRGKHNIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDG 318

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +++S   N  S+  A+  +        G            G+   + +  L   
Sbjct: 319 V---TYVNDSKATNVNSVFYALDTIKTPIVWIVG------------GQDKGNDYNSLLPY 363

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
           +    +  +   G     +  +   +I       +MD      QS   +GD V++
Sbjct: 364 VHE-KVRAIVCLGVDNTPIIQSFYNTIDTLVETRSMDEAVKLAQSFAQEGDTVLL 417


>gi|323343872|ref|ZP_08084099.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
 gi|323095691|gb|EFZ38265.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           oralis ATCC 33269]
          Length = 443

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 122/372 (32%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     +             +IG  L L       ++ I E
Sbjct: 101 HAKMICITGSNGKTTTTSLIYHIFKTAGYDV----GLAGNIGRSLALQVAEEPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IA++  I P HL  +   ++    AK  I +   K  +   
Sbjct: 157 LSSFQLDNMYKFHA----NIAILLNITPDHLDRYEYCMQHYVDAKMRIIQNQTKQDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +K  +S  K K +   + + +   E+            +   
Sbjct: 213 WNDDPIIKHELEKYDIHAVKCPFSELKEKGSIGYIEEGQYKIEK-----PTPFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     D   K+LS F   E R ++            I++S
Sbjct: 268 SLTGKHNIYNSLAAGIASNISGIKKDIIRKSLSDFPGVEHRLEKVCKVGGVQ---YINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + E++    +  V+
Sbjct: 325 KATNVDACWYALESMKT-------PTILILG-----GKDKGNDYSSIKELVRKKCVGLVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L        I V  + +M+            GD V++    +S         
Sbjct: 373 L-GADNTKLHQNFDSLGIPVRDTHSMEDCVKACYDMAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGNQFKNLVRNL 443


>gi|307289639|ref|ZP_07569583.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|306499453|gb|EFM68826.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX0109]
 gi|315166172|gb|EFU10189.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1302]
          Length = 516

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 70/468 (14%), Positives = 140/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+  A+  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGITATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGTVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|225870026|ref|YP_002745973.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
 gi|225699430|emb|CAW92917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. equi 4047]
          Length = 457

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 119/346 (34%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++             +IG P +   +     D  +
Sbjct: 114 SEAPIIGITGSNGKTTTTTMIADVLNA----GNHSALLAGNIGFPASEVAQAATAKDILV 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L          +PHIAVIT + P HL      E+  +AK  I   +     + 
Sbjct: 170 MELSSFQLLGTE----QFQPHIAVITNLVPTHLDYHGSFEDYIAAKRRIQHRMTDKDYLV 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D    + L  K+ A  +     F   +  D             ++  + +       
Sbjct: 226 LNADQELVKSLAQKTKASPV----FFSTKEKVDG------AYLADGYLYFKEERLMSAAE 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + LS F   + R    +        T  ++
Sbjct: 276 LGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHR---LQLVGTLNQVTFYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 333 SKSTNILAC------QKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLV--GLKKM 379

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            L G     +K A  ++   +  ++ +             GD++++
Sbjct: 380 ILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|148828296|ref|YP_001293049.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
 gi|166224763|sp|A5UIR0|MURD_HAEIG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148719538|gb|ABR00666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittGG]
          Length = 437

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 121/341 (35%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++     +  +   H+  +  +E+   AK  I    +       +  
Sbjct: 161 SFQL----ETTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIHHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGAQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|332799095|ref|YP_004460594.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696830|gb|AEE91287.1| UDP-N-acetylmuramate--L-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 468

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 147/404 (36%), Gaps = 51/404 (12%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VVV++ +  +          +IPV    D+L  L          +    IAITG+ 
Sbjct: 64  GADIVVVSSAIPKANPEYIRAIESNIPVIHRADMLSLL---------MTPKKGIAITGAH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+++ +         I     +    +         ++ + E   S       
Sbjct: 115 GKTTTTSMISLIMEKNGFDPTVIIGGELND---IGGNATLGKGEYLVAEADES-----DG 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               + PHIAVIT I   H+  +  +  +  A  +  + + K G I    D+   + L  
Sbjct: 167 SFMKLHPHIAVITNIENDHMDYYKNMNSMKKAFKKFIDNVNKDGFIIFGNDNKHVQELVK 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNM 296
           +++       Y+ G +  +DF  +  K     +  +V  + K   +V  H  G H   N 
Sbjct: 227 ETNKE----YYTVGINYPSDFMAKNVKMNGLITHFDVCFREKLLGKVELHVPGLHNILNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              + + + +  D++  I+A+  F   + R +             + + Y  +P  +KA 
Sbjct: 283 TTAIAVGNRIGIDMEGMIEAIKTFRGVQRRFQIISDIRGIK----VIDDYAHHPTEIKAT 338

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------- 407
           +      +P       A+          +Q    +     +  +   V ++         
Sbjct: 339 LRAARNCNPKK---IYAIFQPHRY--TRTQLLAEEFG--AAFIDADEVIITSIYSAGEQP 391

Query: 408 --GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
             G     + ++L R+  +V + E  + +  +I    + GD ++
Sbjct: 392 IKGVSSALIINSLKRNEKNVVFIENKEDIADYILDRAMPGDYIL 435


>gi|225868966|ref|YP_002744914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
 gi|225702242|emb|CAW99994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus equi
           subsp. zooepidemicus]
          Length = 457

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 118/346 (34%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L+              +IG P +   +     D  +
Sbjct: 114 SEAPIIGITGSNGKTTTTTMIADVLN----VGDQSALLAGNIGFPASEVAQAATAKDILV 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L          +PHIAVIT + P HL      E+  +AK  I   +     + 
Sbjct: 170 MELSSFQLLGTE----QFQPHIAVITNLVPTHLDYHGSFEDYIAAKWRIQHRMTGKDYLV 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN D    + L  K+ A  +     F   +  D             ++  + +       
Sbjct: 226 LNADQELVKSLAQKTKASPV----FFSTKEKVDG------AYLADGYLYFKEERLMSAAE 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + LS F   + R    +        T  ++
Sbjct: 276 LGVPGRHNIENALATIAVAKLRGISNQVISRTLSHFRGVKHR---LQLVGTLNQVTFYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     R I + G     G    +   +L   L    +  +
Sbjct: 333 SKSTNILAC------QKALSGFDNSRVILIAG-----GLDRGNEFDELVPDLV--GLKKM 379

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            L G     +K A  ++   +  ++ +             GD++++
Sbjct: 380 ILLGESAERMKRAADKAGVSYLDAKDVAAATKIAFEQAKAGDIILL 425


>gi|86132605|ref|ZP_01051198.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
 gi|85816847|gb|EAQ38032.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dokdonia
           donghaensis MED134]
          Length = 445

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 109/355 (30%), Gaps = 33/355 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + ATI+ ITGS GKTTT  +    L               +IG        
Sbjct: 95  EFASQY---TDATIVGITGSNGKTTTTMLTGFILEQAGIN----LGVAGNIGDSYAKMVA 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             ++D  + E+    L  I        PHIAV+  + P HL  +    E   ++K  I  
Sbjct: 148 QKEIDTYVLEISSFQLDGIADFA----PHIAVVLNVTPDHLDRYDYKFENYIASKFRIAM 203

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++T  +  + DD        K         +S  +       ++              
Sbjct: 204 NQKETDYLIYDADDPVSVDWLNKHPVRSKLLPFSLTQEFENGAFIKDNNLV----VQIDN 259

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H  +N +    + ++L     T  ++L  F   E R       L 
Sbjct: 260 NTFTMTTNNLALKGQHNKKNAMAASTVANLLNIRKATIRESLEGFQGVEHRL---EQVLK 316

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   A+  ++  +    G            G    + + DL  +
Sbjct: 317 INNVQYINDSKATNVNATFYALDSMNDPTVWIVG------------GVDKGNDYRDLYPL 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +   G     L       + +   + +M             GD V++
Sbjct: 365 INE-KVKAIICLGVDNQKLMSHFENMVDIIVETPSMTEAVKIAYKVAERGDNVLL 418


>gi|189501429|ref|YP_001960899.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
 gi|226711894|sp|B3EQC0|MURD_CHLPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189496870|gb|ACE05418.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium
           phaeobacteroides BS1]
          Length = 466

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 112/383 (29%), Gaps = 37/383 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-AR 155
           + A          II ITG+ GKTTT  M+     S   +         +IGVP +    
Sbjct: 100 EAASWFCPAF---IIGITGTDGKTTTSSMVEAICLSGANSREQRVFSAGNIGVPFSSLVG 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + EL    L          RP +AVIT I P HL  + G  +  +       
Sbjct: 157 EMRKGDIAVVELSSYQL----ERCRSFRPDVAVITNIMPDHLDRYGGSMKRYAEAKYRIY 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++     +   D        +     +  +  F   +             E  W+   
Sbjct: 213 AQQRKQDTLVYNADDETLRAHFEGGGAFVPQLVPFSLDRKRASLGGACYAAIEGDWLITV 272

Query: 276 LQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + G+  +V+         +    N+   L  V+   A                G   R  
Sbjct: 273 VNGREEKVITGSGLFKRSFRGRHNLENALAAVAATRAAGVDVFPIREALRRFAGVEHRQE 332

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     I++S   N  +++ A+           G+ + + G   + G+        
Sbjct: 333 YVRTMHGVDWINDSKATNLNALRQALDA-------TPGKLVLIAGG-RDKGDDLSDLEER 384

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           +        +S + + G       +A    + V  + +++      Q     G+ V+   
Sbjct: 385 V-----RQKVSVLVVFGESKAKFTEAFSSVVRVVPALSLEEAVEQAQRYASTGETVLFSP 439

Query: 450 -KSS---------NSCGFYRLIN 462
             SS             F + + 
Sbjct: 440 GCSSFDMFESFEERGMRFKKHVE 462


>gi|167464919|ref|ZP_02330008.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384122|ref|ZP_08057840.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151202|gb|EFX44511.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 463

 Score = 69.9 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 68/356 (19%), Positives = 109/356 (30%), Gaps = 35/356 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              SKA II ITGS GKTTT  ++   L   + +    G+    +      A    + D 
Sbjct: 107 YRMSKAPIIGITGSNGKTTTTTLVGKMLEEAELSPVVAGNIGRALSEAALDAN---ETDR 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T   RPHIA +  +   HL     +E+  ++KA++F    +  T
Sbjct: 164 LVVELSSFQL----KGTTDFRPHIACLLNVYETHLDYHGSMEDYVASKAKLFANQTQEDT 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N+DD     L      +    +    K K          Q    +            
Sbjct: 220 AVINWDDPVCRSLV---PTIKAGLMPFSMKEKLLPGVYLDEHQKIVFTDRSGATHTILPA 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N L    I      ++      L +F   E R                
Sbjct: 277 KELGIRGSHNIENALAASAIALCAGVNISNIAGVLKLFRGVEHRL---EYVGTYHNLEFY 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NPA+   +I    Q      G            G    S + +L  VL    + 
Sbjct: 334 NDSKATNPAATIKSIEAFEQPLVLIAG------------GLDRGSDYRELIPVLQER-VK 380

Query: 403 HVWLSGFHVLALKDALPRSIHVH---------YSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     ++ A  ++               E +             GD V++
Sbjct: 381 ALVTLGQTGEKIQRAAEQAGLTRRKSVDTAKGVQEAIAEAVELAALLAEPGDTVLL 436


>gi|308388622|gb|ADO30942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha710]
          Length = 445

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/410 (15%), Positives = 124/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  +   
Sbjct: 218 VLNVDDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQG---------LPHRVEKIGKKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|220918994|ref|YP_002494298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956848|gb|ACL67232.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 462

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 114/379 (30%), Gaps = 37/379 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+ ITG+ GK+TT  +    L+              ++G PL+   +
Sbjct: 102 ELAARFLG--GLPIVGITGTNGKSTTTALTGALLA-----RDRRTFVGGNLGTPLSELVL 154

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D  + EL    L  I       R  +A +  + P HL  +  ++  A+AKA +F 
Sbjct: 155 SGEPADAAVVELSSFQLEGIERF----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFA 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +       N  D     L     +      + FG    A  +    +   E + +   
Sbjct: 211 TQQPDDVAVANARDP--RALAMAGASRADLHTFGFGAPTPASARDEGGEPGPEGTAIWFT 268

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G++ E             N    +  V              +      G   R     
Sbjct: 269 PRGRAPERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVA 328

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  S    ++      P G  R + ++G     G   ++ +  L  
Sbjct: 329 EGRGVEWVNDSKATNVDSTFVGLAAF----PSGAPRVVLIMG-----GRGKKAPYAPL-R 378

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            L    +  +   G    A++  L           +             GDVV++    +
Sbjct: 379 PLFGGRVKALLTIGEDAPAIERELGDLAPTEPCGDLADAVRRAAVLSGPGDVVLLSPACA 438

Query: 452 S---------NSCGFYRLI 461
           S             F RL 
Sbjct: 439 SYDQFANYEERGEAFRRLA 457


>gi|319939629|ref|ZP_08013988.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
 gi|319811218|gb|EFW07524.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           anginosus 1_2_62CV]
          Length = 450

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 130/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV         L  L       S A II ITGS GKTTT  M+   L
Sbjct: 85  DNPMVKKALEKEIPVI----TEVELAYLI------SDAPIIGITGSNGKTTTTTMIAEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +         D  + EL    L  I        P IAVI
Sbjct: 135 TA----GGQSGLLSGNIGFPASQVATTATKNDTLVMELSSFQLMGIE----TFHPEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E   +AK  I + + K+  + LN++ +  + L AK+ A  +    +
Sbjct: 187 TNLMPTHIDYHGSFENYVAAKWNIQKNMSKSDFLVLNFNQTLAKELAAKTQATVVPFSTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      E + +  + +           G H  +N L T+ +  +   +
Sbjct: 247 ----------EKVDGAYLEGNMLTFRGEPVMAADELGVPGSHNVENALATIAVAKLRGIE 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQVIKETLAGFGGVKHRL---QYVGEINHVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  +  +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDIQ--GLKKMVILGESAARVKRAADKAGVSYMDAA 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 401 DVKDATQKAFAEAQAGDIVLL 421


>gi|262370166|ref|ZP_06063493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
 gi|262315205|gb|EEY96245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           johnsonii SH046]
          Length = 448

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 116/347 (33%), Gaps = 26/347 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   I+AITGS  K+T   ++ +             +   ++G P        + D 
Sbjct: 100 RRATDKPIMAITGSNAKSTVTTLIGLMAEHAGVKV----AVGGNLGRPALDL-TKDEPDL 154

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            I EL    L      T  ++  +AV+  ++  HL     +    +AK  IF+G++K   
Sbjct: 155 YILELSSFQL----ETTSNLQAEVAVVLNMSEDHLDRHGDMMGYHTAKHRIFQGVKKVVH 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     +    +        + SFG +     Q    +      W+          
Sbjct: 211 NR--------DDSLTRPLVPDATPMQSFGLNAPDMNQYGVLRDDDGTIWLARGRTRLLNS 262

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H   N L  L +   +   +++ ++ L  F   E R        +       
Sbjct: 263 AEMYIQGTHNVANALACLALGEAINLPLESMLETLKSFKGLEHRC---EFVKDVEGVRYY 319

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +  AAI  L        G+   +LG   +  + S               + 
Sbjct: 320 NDSKGTNVGATLAAIDGLGAAIEAKGGKVAIILGGQGKGQDFSA------LREALSKYVK 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              L G     ++ A+  +  + ++ET++      Q+     DVV++
Sbjct: 374 VAVLIGEDAALIEQAVAGTTTLLHAETLEQAVALCQAHTQAHDVVLL 420


>gi|154498031|ref|ZP_02036409.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
 gi|150273021|gb|EDN00178.1| hypothetical protein BACCAP_02011 [Bacteroides capillosus ATCC
           29799]
          Length = 461

 Score = 69.9 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 111/383 (28%), Gaps = 51/383 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-V 160
                   IIA+TGS GKTTT  +++  L               +IG PL      ++  
Sbjct: 110 FFQVCPCEIIAVTGSDGKTTTTTIISELLKKAGYNVYVG----GNIGKPLLAETPNMEPD 165

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +        P IAV+T +AP HL     +EE   AK  IF      
Sbjct: 166 DMVVLELSSFQLMTMDMS-----PDIAVVTNVAPNHLDVHKSMEEYVEAKENIFAHQSTE 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                N+D+        K+                +  ++ +     +   +    +   
Sbjct: 221 NLAVFNWDNEITRDFSKKAPGNV---------MCFSRREMLERGIYVKDDAIWCADRDGH 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +V+          + +            + +            G   R           
Sbjct: 272 RKVLLLSDILLPGNHNVENYMAAIAAVNGLVSDETIRLFARSFGGVEHRIELVRTVDGVR 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +      G            G         L   +   +
Sbjct: 332 YYNDSIASSPTRTIAGLRSFEEKVILIAG------------GYDKHIPFDVLGPEIIE-H 378

Query: 401 ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           +  + L+G     ++ A+         +  +   +  +   L   S    GDVV++    
Sbjct: 379 VKELILTGDTAEKIRAAVENAPGYNGSNPPIRMYQDFEQAVLAAHSMAQPGDVVILSPAC 438

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F R++  L
Sbjct: 439 ASFDRFKNFMERGNAFKRIVREL 461


>gi|228472694|ref|ZP_04057454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276107|gb|EEK14863.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 444

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 115/382 (30%), Gaps = 44/382 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + A IIAITGS GKTTT  ++   L     +     +   +IG        
Sbjct: 93  EFASRY---TDAKIIAITGSNGKTTTTTLVYHLLKEAGLSV----AVGGNIGYSFARLVA 145

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               ++ + E+    L           PHIA++  I P HL  ++   +    AK  I E
Sbjct: 146 QEPKEYYVLEISSFQLD----DITSFHPHIALLLNITPDHLDRYNYEFQNYIDAKMRITE 201

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +    +  + DD        K         +S  K+          K          Q
Sbjct: 202 FQQAADFLIYDADDPVTAQEIGKGQVKAQLLPFSLEKTFERGAWSLDEK---NMYVNVNQ 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +         G H  +N +    +  +L    +    +L  F     R         
Sbjct: 259 NIFEMSTKDLTIKGKHNLKNAMGATMVAKLLNVRNENIRNSLMTFQGVPHR---LEFVRE 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S+  A+  + +      G            G+   + +  L   
Sbjct: 316 VEGVRYINDSKATNVNSVYYALDSMEEGLVWIVG------------GQDKGNDYTPLIPY 363

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KS 451
           +S   +  +   G     +       +     + +M+      +    +GD V++    +
Sbjct: 364 VSK-KVKAIVCLGLDNQKIIQTFQSIVPTIIETHSMEDAVQVGRGLSQEGDTVLLSPACA 422

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +N+L
Sbjct: 423 SFDLFQSYEDRGNQFKHYVNML 444


>gi|146295957|ref|YP_001179728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|166224756|sp|A4XI02|MURD_CALS8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145409533|gb|ABP66537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 453

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 116/384 (30%), Gaps = 43/384 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
            ++ +A R      I+AITG+ GKTTT  ++   L  +            +IG P     
Sbjct: 98  GEIELAYRFCRSKNIVAITGTNGKTTTTTLVGEILKKVFDNV----IVCGNIGFPFIDYV 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D    + E+    L  I++     +P +  I  I P HL+    ++    AK  IF
Sbjct: 154 ESSTDDTIFVIEISSFQLETIKYF----KPMVGCILNITPDHLNRHMNMDNYIRAKMRIF 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E +++ G   LN D+S    L             +       +   +             
Sbjct: 210 ENIDQEGYSVLNMDNSITRDLI-------GCAKGTVITFSKNESDTQNSVFVDGDFIYRN 262

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            L      +    I      N+  TL  +  +                 +G   R     
Sbjct: 263 FLGKVEKVMRKDDIFMPGEHNLENTLAAIGCVLPFEIQPSIIEKTLKEFKGVEHRIEFVR 322

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  +   A++          G            G          A+
Sbjct: 323 EINGVRFYNDSKGTNTDASSKALNSFEVPIILIAG------------GYDKGESFEKFAK 370

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
           ++S   +  V+L G     + D L +    +  + E +            +GDVV++   
Sbjct: 371 LISQ-KVKKVFLLGQTKQKIADQLQKIGYLNFEFVEDLKEAVKKSFEIAKEGDVVLLSPA 429

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F + +N L
Sbjct: 430 CASWDMFESYEQRGRLFKQYVNEL 453


>gi|145630236|ref|ZP_01786018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|144984517|gb|EDJ91940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
          Length = 437

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 124/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLAHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|312871945|ref|ZP_07732027.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
 gi|311092522|gb|EFQ50884.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2062A-h1]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 134/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+       +     +L+ 
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFI--ANFDQKNILEQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +    +S  AD+ +       EQ                   G H  QN L
Sbjct: 239 ELSLTKAHVVTFSEESNQADYYIG------EQYLESQADHEIMKISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  ++ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKLMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|229588488|ref|YP_002870607.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens SBW25]
 gi|229360354|emb|CAY47211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens SBW25]
          Length = 448

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 131/375 (34%), Gaps = 42/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AI+GS  K+T   ++     +  K      +   ++G P     +  D++
Sbjct: 103 FARHAKAPIVAISGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDIE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  ++  H+  +SG+     AK  IF G ++  
Sbjct: 158 LYVMELSSFQLETTHDLGA----EVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++         ++FG SK  DF+    ++   + ++  + Q    
Sbjct: 214 VNRQDA--------LSRPLMGEGLPCWTFGLSKP-DFKAFGIREEHGEKYLAFEFQNLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + +L  F   E R    +   +    + 
Sbjct: 265 VRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRTFGGLEHRC---QWVRDLDGVSY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    EG+ + + G   + G   +     +A      + 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GADFKDLKGPVA-----THC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     +  AL  ++    + ++D      ++    GD V++    +S      
Sbjct: 373 RAVVLIGRDSDLIAAALGDAVPQVRATSLDDAIAHCKALAQPGDAVLLSPACASFDMFKN 432

Query: 453 ---NSCGFYRLINLL 464
                  F R +  L
Sbjct: 433 YEERGQLFARAVEAL 447


>gi|145641278|ref|ZP_01796858.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae R3021]
 gi|145274115|gb|EDK13981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.4-21]
          Length = 437

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 124/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLAHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|169824312|ref|YP_001691923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
 gi|167831117|dbj|BAG08033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Finegoldia magna
           ATCC 29328]
          Length = 441

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 135/407 (33%), Gaps = 50/407 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D    + +  + +  V D+     +LA          I+AITG+ GKTTT  ++T  L+ 
Sbjct: 70  DNPVILKANELNIEVVSDL-----ELAQRIFG--DIKIVAITGTNGKTTTTSLMTKMLND 122

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +    IG+     G+   +     D  + + E     L      T   +P  + I  I
Sbjct: 123 SGRKAISIGNIGV--GMLWEIYNSDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINI 175

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+     ++   +AK  + +  ++     LN DD ++E  K  + A       S   
Sbjct: 176 TPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTS--- 232

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               + +   + + +   + +              IGYH  QN+L  + +  ++  + D+
Sbjct: 233 ---KNVKRGSFIKDNSIYFSDSDCDKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDDS 289

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E R        +       ++S   N  +   AI    +         +
Sbjct: 290 IRETLMSFSGVEHRL---EFVRDLSGVKYYNDSKGTNVDASVKAIESFDK--------NV 338

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETM 430
            +L      G   +   +D   +        + L G      +         H++  + M
Sbjct: 339 IILA-----GGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAKEYGFKHIYLVDDM 393

Query: 431 DGLFLFIQSSLVDGDVVVVK-SS-----------NSCGFYRLINLLL 465
                        GDVV++  +S               F  L+N L 
Sbjct: 394 KQAVTQANKIAESGDVVLLSPASASWGMYNNYEERGNEFKDLVNNLR 440


>gi|145627896|ref|ZP_01783697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145639344|ref|ZP_01794950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|144979671|gb|EDJ89330.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 22.1-21]
 gi|145271647|gb|EDK11558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittII]
 gi|309751218|gb|ADO81202.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2866]
          Length = 437

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 122/341 (35%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++     +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAVTVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGAQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|315653712|ref|ZP_07906632.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
 gi|315489074|gb|EFU78716.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners ATCC 55195]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 134/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+       +     +L+ 
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFI--ANFDQKNILEQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +    +S  AD+ +       EQ                   G H  QN L
Sbjct: 239 ELSLTKAHVVTFSEESTQADYYIG------EQYLESQADHEIMKISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  ++ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKLMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|295098905|emb|CBK87994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           cylindroides T2-87]
          Length = 436

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 129/418 (30%), Gaps = 58/418 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVAARLRSKATIIAITGSVGKTT 121
           ++  D    + +  IP   V  V            ++ +A R        A+TG+ GKTT
Sbjct: 57  LLEKDYPFVVKNPGIPY-RVPIVKHFQEAGVPIYTEIEIAYRFAPGFKYAAVTGTDGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
              +L   L++ +           +IG PL+   +    +     L +S+          
Sbjct: 116 VTTLLYEMLNAKE-----KALVAGNIGTPLSELALIHQEETFNVALELSNF--QLLGIDT 168

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I+V+T +AP HL     +EE   +K  I++          N DD            
Sbjct: 169 FQPKISVVTNLAPDHLDYMDSLEEYYQSKMLIYKNCNSQDWFIRNIDDENIVKYAQNIPC 228

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +           ++     + ++  ++ +          +G     N +M   
Sbjct: 229 QVINFSLT-----------QEADLYKDDTFAYLKDEILFKLSDLKIVGDFNCGNAMMAAC 277

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   +  D++T    +  F   E R                ++S   N  +  AA+S   
Sbjct: 278 MAYKMGIDLETIQSVIRSFKGVEHRI---EYVNTINGVRFYNDSKATNTHAACAALSAFD 334

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +      G            G+       DL +    + I H +  G      K      
Sbjct: 335 KNVILLCG------------GKDKHISFDDLKQY--DHKIKHCFSFGQTKDHFKSIFTNQ 380

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
                 +TM          + +GDV+++    SS             F  L+  + + 
Sbjct: 381 TS---CQTMKDALDHAIEIIEEGDVILLSPACSSFDQFKNYEIRGEIFKDLVEEIAKR 435


>gi|68249685|ref|YP_248797.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 86-028NP]
 gi|260581815|ref|ZP_05849611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|81174949|sp|Q4QLG0|MURD_HAEI8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68057884|gb|AAX88137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           influenzae 86-028NP]
 gi|260095008|gb|EEW78900.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae NT127]
 gi|309973397|gb|ADO96598.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Haemophilus
           influenzae R2846]
          Length = 437

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 122/341 (35%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   E          
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAEVGVLNNE--- 213

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K      +       S   +      K  + + ++ V+ +          +
Sbjct: 214 --------DKLTFGEGENQARQTVSFAENSADYWLKTENGKQYLMVKDEVILPCEEVTLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAATALAQAVGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGVQLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|325911662|ref|ZP_08174069.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|329921080|ref|ZP_08277603.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
 gi|325476428|gb|EGC79587.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 143-D]
 gi|328934987|gb|EGG31476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 1401G]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 134/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+       +     +L+ 
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFI--ANFDQKNILEQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +    +S  AD+ +       EQ                   G H  QN L
Sbjct: 239 ELSLTKAHVVTFSEESNQADYYIG------EQYLESQADHEIMKISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|115372723|ref|ZP_01460029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823490|ref|YP_003955848.1| UDP-n-acetylmuramoylalanine--d-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370204|gb|EAU69133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396562|gb|ADO74021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 454

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 129/419 (30%), Gaps = 56/419 (13%)

Query: 66  GLVVVN------TDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            LVVV+           +  +  +P++G V        +LA      S   +  ITG+ G
Sbjct: 72  ALVVVSPGVPLSRPEFKAARAAGVPIWGEV--------ELASRFL--SAVPLFGITGTNG 121

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRF 177
           K+TT  +       +            ++G P + A +  +     + EL    L     
Sbjct: 122 KSTTTALTG----ELFSRGGGRTFVGGNLGRPFSEAALTPEAWDALVVELSSFQL----E 173

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +R   A I  + P H+  +        AK  IF          +N DD     L  
Sbjct: 174 GIQQMRARGAAILNLTPDHIDRYESHAAYGQAKTRIFLNQGVGDFAVVNVDDPDVVGLAR 233

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A   +  +S   +     +L       E  +    L+           G H AQN +
Sbjct: 234 Q--ARVPRYGFSLTGNPVEALELAGRAVAQEGGFRLDFLKETYSLTNRALRGAHNAQNAM 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +  +     +     L  +     R +  R          +++S   N  S+  A+
Sbjct: 292 AATLLARLGGVPREAVQAGLDGYPGLPHRLESVRVLDGVE---WVNDSKATNVDSVLVAL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              +       G  + + G     G+   + +  + +      +  V   G     L  A
Sbjct: 349 RAFA-------GNLLLIAG-----GKGKGAPYQPMVDE-GRGKVKAVLTIGQDAELLAAA 395

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
              +  VH   T++      +     GD V++    +S             F RL+  L
Sbjct: 396 YREAAPVHACGTLEVAVRRARELAKGGDTVLLSPACASYDQFKNFEDRGETFKRLVKAL 454


>gi|260591742|ref|ZP_05857200.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
 gi|260536026|gb|EEX18643.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           veroralis F0319]
          Length = 443

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 117/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L        + I E
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYDV----GLAGNIGNSLALQVAEDPHAYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   K  +   
Sbjct: 157 LSSFQLD----NMYNFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTKDDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +   +S  K   +   + + +   EQ            +   
Sbjct: 213 WNDDPVIKKELKKYDVHAVCYPFSELKEHGSIGYIEEGQYKIEQ-----PEPFNMEQEDL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     ++  K+LS F   E R               I++S
Sbjct: 268 SLTGRHNIYNSLAAGIASNISGIKKESIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMRT-------PTILILG-----GKDKGNDYSAIKDLVKEKCTGLVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      I V  + +M             GD V++    +S         
Sbjct: 373 L-GADNKKLHDNFDSLGIPVRDTHSMKDCVTACAEMAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGDQFKALVRAL 443


>gi|259501649|ref|ZP_05744551.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|302191144|ref|ZP_07267398.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           iners AB-1]
 gi|309803217|ref|ZP_07697314.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|312871630|ref|ZP_07731722.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
 gi|312873235|ref|ZP_07733291.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|259166934|gb|EEW51429.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           iners DSM 13335]
 gi|308164725|gb|EFO66975.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 11V1-d]
 gi|311091246|gb|EFQ49634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2052A-d]
 gi|311092855|gb|EFQ51207.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 3008A-a]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 134/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +    +        +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKFGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+       +     +L+ 
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFI--ANFDQKNILEQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +    +S  AD+ +       EQ                   G H  QN L
Sbjct: 239 ELSLTKAHVVTFSEESTQADYYIG------EQYLESQADHEIMKISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|215446387|ref|ZP_03433139.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase murF
          [Mycobacterium tuberculosis T85]
 gi|289758278|ref|ZP_06517656.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
          [Mycobacterium tuberculosis T85]
 gi|289713842|gb|EFD77854.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
          [Mycobacterium tuberculosis T85]
          Length = 130

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
          M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1  MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56 F 56
           
Sbjct: 60 H 60


>gi|152980553|ref|YP_001354707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Janthinobacterium sp. Marseille]
 gi|151280630|gb|ABR89040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 120/393 (30%), Gaps = 29/393 (7%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIAL 130
            +++ +     IPV+G  ++      LA     +     +IAITG+ GKTT   ++   L
Sbjct: 84  AEIIPAAAEKEIPVWG--EIELFAQALAALKEDKGYAPKVIAITGTNGKTTVTSLVG-LL 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    +    +   +      +  D    ++ L +S        T+ ++  +A + 
Sbjct: 141 CQRAGLTVQVAGNISPAALDKLHQVLTDDQLPQVWVLELSSF--QLHTTYSLQADVATVL 198

Query: 191 TIAPAHLSNFSGI----EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK---------A 237
            +   HL     +    ++ A         +       +    S    +          A
Sbjct: 199 NLTQDHLDWHGDMAAYADDKARIFGSNTIRVLNRDDALVMQMSSPLSKVITFGADEAEQA 258

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               L  +    +      + + +K ++  +   + V              G H A N L
Sbjct: 259 DCFGLVDENGMRWLSVAVEEEEPQKKRRKKDNVELAVSTNKLMPVDALKIRGQHNAINAL 318

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L +   +       +  L  +H       R    +  G     D+S   N  +  AA+
Sbjct: 319 SALALCRAIGLPFAQLLHGLRDYHG---EPHRVEHVMTIGGVDYYDDSKGTNVGATVAAL 375

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           + L           + + G   +  + S      +A+         V L G     ++ A
Sbjct: 376 NGLGASQDGASNHLVLIAGGDGKGQDFSP-LADPVAKYARA-----VILIGKDADNIRAA 429

Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    + +    T++            GD V++
Sbjct: 430 LQATGVDMINCTTLEEATQKAAELAQSGDAVLL 462


>gi|261401755|ref|ZP_05987880.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
 gi|269208133|gb|EEZ74588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           lactamica ATCC 23970]
          Length = 445

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 121/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGDEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATVAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALKDK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|282859040|ref|ZP_06268176.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
 gi|282588208|gb|EFB93377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           bivia JCVIHMP010]
          Length = 443

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/372 (19%), Positives = 117/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L       D+ I E
Sbjct: 101 HSKMICITGSNGKTTTTSLIFHIFKDAGYDV----GLAGNIGNSLALQVAEDPHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   K  +   
Sbjct: 157 LSSFQLD----DMYNFRANIAILLNITPDHLDRYEYKFENYADAKMRIIQNQTKEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     ++  +S  K K +   + + +   EQ            +   
Sbjct: 213 WNDDPVIKKELEKFDVKAVRYPFSELKEKGSIGYIEQGQYTIEQ-----PTPFNMEQEDL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     +   K+LS F   E R               I++S
Sbjct: 268 SLTGKHNIYNSLAAGIAANIGGIKKENIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++          + ++G     G+   + +  + + L       V 
Sbjct: 325 KATNVDACWYALESMTT-------PTVLIIG-----GKDKGNDYDAI-KDLVKQKCRAVV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     L D      I V  + +M        +    GD V++    +S         
Sbjct: 372 YLGADNQKLHDNFDHLGITVRDTHSMKDCVAACAALAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L   L
Sbjct: 432 RGEQFKELARAL 443


>gi|298207886|ref|YP_003716065.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
 gi|83850527|gb|EAP88395.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Croceibacter atlanticus HTCC2559]
          Length = 445

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 122/410 (29%), Gaps = 44/410 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV         +  I      D   A+      A   + ATII ITGS GKTT       
Sbjct: 66  VVMKSPGIPDKAPIIKQL--KDNKVAIVSEIEFASEFTNATIIGITGSNGKTTVTRWTHH 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L           S   +IG            +  + EL    L +I+      RPHIA+
Sbjct: 124 ILKEGGLN----ASVGGNIGDSFAKQVALSPSENYVLELSSFQLDDIK----NFRPHIAI 175

Query: 189 ITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           IT I P HL  +     +  ++K  I         +  + D+                  
Sbjct: 176 ITNITPDHLDRYDYDFSKYVASKFRITMNQTNDDYLIYDADNEAINDYLEAHTIQPKLVP 235

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +S  KS      +   +          + +           G H  +N + +     +L 
Sbjct: 236 FSTTKSLKYGAYIEHNELIIN----IDENKIHMPIDSLALKGTHNQKNAMASSSAAKMLK 291

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
               T  ++L+ F   E R       L       I++S   N  +   A+  +S  +   
Sbjct: 292 IRKQTIRESLANFQGVEHRL---EHVLKINNVNYINDSKATNVNATFYALESMSSDTIWI 348

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY- 426
            G            G    + +  L  +++   +  +   G     +  A    + +   
Sbjct: 349 VG------------GVDKGNDYSQLNALVNE-KVKAIICLGVDNQKILKAFNNCVDIMVE 395

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +++M             GD V++    +S             F   + LL
Sbjct: 396 TQSMSEAIKIAYKIGERGDAVLLSPACASFDLFKNYEDRGRQFKEAVRLL 445


>gi|15607039|ref|NP_214421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
 gi|30315978|sp|O67852|MURD_AQUAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2984290|gb|AAC07814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Aquifex aeolicus
           VF5]
          Length = 415

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 109/378 (28%), Gaps = 56/378 (14%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       K  +IAITG+ GK+TT  +  + L      +        +IG P +   +
Sbjct: 76  ELAYRF---FKGKVIAITGTDGKSTTTRLTYLILKK----FFDEVFEAGNIGKPFSEVVL 128

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+               RP+I    + +  HL     IE+   +K  IFE 
Sbjct: 129 ENPEGIAVLEVSSFQ----GKTLKTFRPNIGAFISFSVDHLDWHPSIEDYLKSKYRIFEN 184

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +   + LN      +   +++  +                     +       +  + 
Sbjct: 185 QTEEDFLILNDLVYEIKKTPSRARKVLFS------------------ELYINSDSVFYKD 226

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H   N  +   I   L    +   + +  F     R        N 
Sbjct: 227 IRLFNPKNLKIRGLHNVYNASVASLIALTLGLKPEDFEEVIYEFRGLPHRL---EFLGNF 283

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               + ++S +  P ++  A+          +   I ++G   +  +     H      +
Sbjct: 284 NGVEVYNDSKSTTPHALMHALKTF------PDNSVILIVGGKDKGADFYSLRH------I 331

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
               +      G     +KD+      V    T++      +     G+VV+     SS 
Sbjct: 332 VQKKVKIALAIGETKEKIKDSWKDITEVKTCNTLEEAVKLAREVSKLGNVVLFSPACSSF 391

Query: 453 --------NSCGFYRLIN 462
                       F  L+ 
Sbjct: 392 DMFRNYEERGEKFKELVE 409


>gi|309809977|ref|ZP_07703825.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
 gi|308169765|gb|EFO71810.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners SPIN 2503V10-D]
          Length = 460

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/424 (16%), Positives = 135/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +             +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+     N+D      +  
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFIANFDQKN---ILE 237

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  ++    + +F +           +    Q+  E+              G H  QN L
Sbjct: 238 QELSITKANVVTFSEESTQADYYIGEQYLESQADHEIMK-----ISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|256371401|ref|YP_003109225.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007985|gb|ACU53552.1| Mur ligase middle domain protein [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 526

 Score = 69.5 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 116/347 (33%), Gaps = 22/347 (6%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR-MPVDVDFGIFELGMS 170
            ITGS GKTTTK  +   +    +T A   S+NN  G+   +   +  DV+  + E+GM 
Sbjct: 182 GITGSFGKTTTKGYVAALVEGTYRTLATPASFNNRGGLARAINEHLTSDVEVFVAEMGMF 241

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
             GEI  L   VRP I+VIT I P HL        I  AK EI E              +
Sbjct: 242 GPGEIAELVSWVRPEISVITAIGPVHLERLGSEAAIVRAKLEIVETARVVVLNVDYPRLA 301

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  +  A  +  + +     +   +     +              +          
Sbjct: 302 LAANALEQEGARRVVRVSAISLEADVAVKPNDEGEVV----------VYAHGAKIAKAAL 351

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                  +   +   L   V     A  +   K    +            ++D++YNANP
Sbjct: 352 ADVVAGNLACAVAVALELGVAPEDIAERLGRIKPAPNRLVAGVSPTSGVEVLDDTYNANP 411

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
              + A+  L      G  R +   G M E+G      +   A+  +    SH+ + G  
Sbjct: 412 MGARRALDALGARRDGGGRRVVVTPG-MIELGRRQYLENFKFAKAAAQVA-SHIIVVGRT 469

Query: 411 VLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVDGDVVV 448
                +A               + ++   +     ++  L  GDVV+
Sbjct: 470 NRRALEAGADEGRDEPGSTLQELRWAPDREHAVALVREMLEPGDVVL 516


>gi|325203527|gb|ADY98980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240355]
          Length = 445

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDTFCCAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPRNELLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRHDLDGCGLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|222528782|ref|YP_002572664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Caldicellulosiruptor bescii DSM 6725]
 gi|254766034|sp|B9MQ99|MURD_ANATD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222455629|gb|ACM59891.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 457

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 127/414 (30%), Gaps = 46/414 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LV+V+  +  S   L   V      +  + ++ +A R      I+AITG+ GKTTT  ++
Sbjct: 71  LVIVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLV 127

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L    +          +IG+P         +    + E+    L  I++     +P 
Sbjct: 128 GEILKKQYEDV----VVCGNIGLPFIDTIETSSEDTIFVLEISSFQLETIKYF----KPK 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L   +    I 
Sbjct: 180 IGCILNITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIV 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +         Q                       +    I      N+   L  +S 
Sbjct: 240 FSKT-------KTQFENVVFVENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISC 292

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                        V     G   R             ++S   N  + + A++       
Sbjct: 293 TLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYNDSKGTNTDAAEKALNAFENPII 352

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IH 423
              G            G          A +++   +  V+L G     +   L R    +
Sbjct: 353 LIAG------------GYDKGESFEKFASLVAK-KVKKVFLLGQTKQKIASELERIGYKN 399

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
             +  T+            +GD+V++    +S             F   +N LL
Sbjct: 400 FEFVSTLKEAVRKSFECAQNGDIVLLSPACASWDMFENYEQRGRMFKEYVNELL 453


>gi|255320976|ref|ZP_05362149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262379934|ref|ZP_06073089.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
 gi|255301940|gb|EET81184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acinetobacter
           radioresistens SK82]
 gi|262298128|gb|EEY86042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acinetobacter
           radioresistens SH164]
          Length = 448

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 137/421 (32%), Gaps = 66/421 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A+ KG                  IPV  V D+           R  ++  I+AITGS
Sbjct: 82  IQQAIAKG------------------IPV--VGDIQLL--------RRATEVPIVAITGS 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   ++ +      K      +   ++G P     +    +  I EL    L    
Sbjct: 114 NAKSTVTTLIGLMAKEAGKKV----AVGGNLGRPALDL-LKDQPELIILELSSFQL---- 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T L+   +AV+  ++  HL     +    +AK  IF+G++K      +          
Sbjct: 165 ETTSLLNAEVAVVLNMSEDHLDRHGDMLGYHAAKHRIFQGVKKVVFNRDDA--------L 216

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           ++        + SFG +     Q    +      W+    +        +  G H   N 
Sbjct: 217 SRPLVPDAVPVQSFGLNAPDMNQYGVLRDTDGTLWLARGRERLLKSTEMYIQGTHNIANA 276

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +   +++ ++ L  F     R                ++S   N  +  AA
Sbjct: 277 LACLALGEAIGLPLNSMLETLKSFKGLAHRC---EYVDTVNNVRYYNDSKGTNIGATLAA 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  L       +G+ + +LG   + G+  ++             +  V L G   L ++ 
Sbjct: 334 IEGLGAAIAPRKGKVVVILGGQGK-GQDFKAL-----RAAVQQYVKTVVLIGEDALKIEQ 387

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++  S  +  + T+        +     DVV++    +S             F   +  L
Sbjct: 388 SIEGSTEILKAATLQEAVQLCHAKADAEDVVLLSPACASFDMFKGYDDRGHQFVACVKAL 447

Query: 465 L 465
           +
Sbjct: 448 V 448


>gi|15602005|ref|NP_245077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|30316119|sp|Q9CPB0|MURD_PASMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12720355|gb|AAK02224.1| MurD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 434

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 73/374 (19%), Positives = 137/374 (36%), Gaps = 52/374 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +K  IIAITGS GK+T   ++   +++             +IG+P     +    D
Sbjct: 100 FCREAKKPIIAITGSNGKSTVTSLVAHMVNAAGLKVGMG----GNIGIPALSL-LEQAHD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  I+  H++ +  +E+   AK +I+   +   
Sbjct: 155 MYVLELSSFQL----ETTYSLKATSATVLNISEDHMNRYVDLEDYRQAKLKIYHHAQTAV 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +   +            G+K   SFG+    D      K    +S++  + +    
Sbjct: 211 INAEDALTAM----------DGLKNGVSFGE----DNADYWLKTEKGRSYLMAKDERVLA 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  + +       +++  +AL  F+  + R +    A        
Sbjct: 257 CDEMKLVGRHNYMNALAAIALAQAAGIPLESIRRALREFNGLDHRFQLAHFAHGV---RW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG   +  + S     +LA +++  NI
Sbjct: 314 VNDSKATNVGSTVAALTGLQL-----NGTLHLLLGGDGKGADFS-----ELASLINQPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
              +  G     L    PRS       TM+     ++ +L  GD+V++    +S      
Sbjct: 364 -ICYCFGQDGEQLAALSPRSQR---FSTMEEAINALRPTLSAGDMVLLSPACASLDQFSS 419

Query: 453 ---NSCGFYRLINL 463
                  F RL  L
Sbjct: 420 FEQRGDEFTRLAKL 433


>gi|303233989|ref|ZP_07320638.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
 gi|302494914|gb|EFL54671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna BVS033A4]
          Length = 441

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 135/407 (33%), Gaps = 50/407 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D    + +  + +  V D+     +LA          I+AITG+ GKTTT  ++T  L+ 
Sbjct: 70  DNPVILKANELNIEVVSDL-----ELAQRIFG--DIKIVAITGTNGKTTTTSLMTKMLND 122

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +    IG+     G+   +     D  + + E     L      T   +P  + I  I
Sbjct: 123 SGRKAISIGNIGV--GMLWEIYNSDKDT-YFVIECSSFQL----ESTKHFKPQYSCIINI 175

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+     ++   +AK  + +  ++     LN DD ++E  K  + A       S   
Sbjct: 176 TPDHIDWHGSMKNYVNAKKNVLKNQDENCYTVLNADDEYYEECKKFTKANIYDISTS--- 232

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               + +   + + +   + +              IGYH  QN+L  + +  ++  + D+
Sbjct: 233 ---KNIERGSFIKDNSIYFSDSYCDKIIDLKDVKLIGYHNYQNVLFCVTLAKLIGINDDS 289

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E R        +       ++S   N  +   AI    +         +
Sbjct: 290 IRETLMSFSGVEHRL---EFVRDLSGVKYYNDSKGTNVDASVKAIESFDK--------NV 338

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETM 430
            +L      G   +   +D   +        + L G      +         +++  + M
Sbjct: 339 IILA-----GGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAKEYGFKNIYLVDDM 393

Query: 431 DGLFLFIQSSLVDGDVVVVK-SS-----------NSCGFYRLINLLL 465
                        GDVV++  +S               F  L+N L 
Sbjct: 394 KQAVTQANKIAESGDVVLLSPASASWGMYNNYEERGNEFKDLVNNLR 440


>gi|189462921|ref|ZP_03011706.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
 gi|189430348|gb|EDU99332.1| hypothetical protein BACCOP_03622 [Bacteroides coprocola DSM 17136]
          Length = 444

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 63/372 (16%), Positives = 118/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGLNV----GLAGNIGQSLAYQVAECNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDYKMQNYVDAKFRIIQNQTDNDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +              + +    ++    +   
Sbjct: 214 WNDDPVIQKELHKYGIHGHYYPFAEKKEEGLAAF-----VEQNKVYFTKPIEFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      +I     +   +ALS F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANIAGIRKECIREALSDFKGVEHRLEKVTRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A++ +         + + +LG     G+   + + ++A+++     S + 
Sbjct: 326 KATNVNSCWYALNSMKT-------KTVLILG-----GKDKGNDYNEIADLVKE-KCSGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D      + +   ++M             G+ V++    +S         
Sbjct: 373 FLGLHNEKLHDFFDGFGLPIADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGDQFKECVRNL 444


>gi|309806265|ref|ZP_07700278.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
 gi|308167249|gb|EFO69415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LactinV 03V1-b]
          Length = 460

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 124/378 (32%), Gaps = 44/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S A  + +TGS GKTTT  +    + +             +IGVP++   +  +  D  +
Sbjct: 111 SSAPYVCVTGSNGKTTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L       + ++P +A I       H+      E   +AK  I +  +K+   
Sbjct: 171 VEISSFQLM----GVNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYF 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N+D      +  +  ++    + +F +           +    Q+  E+         
Sbjct: 227 IANFDQKN---ILEQELSITKANVVTFSEESTQADYYIGEQYLESQADHEIMK-----IS 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  QN L+ + I  I+ A  +     LS F        R +  +      + +
Sbjct: 279 DIKIPGRHNQQNSLVAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYN 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S + N  +   AI   SQ      G            G        +L  +L   ++  
Sbjct: 336 DSKSTNIEAASVAIPSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKA 382

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + L G     L DA  ++    +    T+            DGDV++     +S      
Sbjct: 383 IVLYGETKYLLADAARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNT 442

Query: 453 ---NSCGFYRLINLLLEE 467
                  F + +  L  +
Sbjct: 443 FEDRGDFFVKFVKELKTK 460


>gi|210608677|ref|ZP_03287954.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
 gi|210152934|gb|EEA83940.1| hypothetical protein CLONEX_00133 [Clostridium nexile DSM 1787]
          Length = 450

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 102/334 (30%), Gaps = 41/334 (12%)

Query: 146 HIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A +   +    + E+    L       H  RP ++ I  I P HL+    +E
Sbjct: 143 NIGNPYTAAALEMREDSVAVAEMSSFQL----ETIHEFRPKVSAILNITPDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK +I +   K  T  LNY+D     +     A  +           +  +     
Sbjct: 199 AYIKAKEDIAKNQTKEDTCVLNYEDEVTRKIGENVKANVLY---------FSSQRKLDRG 249

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +   + ++   + +    + +      N    +  V++  A                
Sbjct: 250 IYLDDGNIILRQDEEILVCNVNELKLLGTHNYENVMAAVAMAAAYGTPMEVIRRTIKEFA 309

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R      +      ++S   NP +    I  +++ +    G            G  
Sbjct: 310 GVEHRIEFVREKDGVAYYNDSKGTNPDAAIKGIQAMNRPTVLIGG------------GYD 357

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLV 442
             S + +  +      +  + L G     + +A  R   V Y   ++ +        +  
Sbjct: 358 KDSEYEEWIQ-AFDGKVKLLVLVGATKEKIAEAAERVGFVSYVMADSFEEAVEKCIEAAE 416

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            GD V++    +S             F  L+N L
Sbjct: 417 PGDAVLLSPACASWGMFKNYEERGDKFKELVNCL 450


>gi|317474535|ref|ZP_07933809.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909216|gb|EFV30896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 444

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 127/409 (31%), Gaps = 54/409 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++  +    IP+        +  + A      + A +I ITGS GKTTT  ++    
Sbjct: 75  DAPLILKLKEKGIPII-------SEIEFAGRY---TDAKMICITGSNGKTTTTSLIYHIF 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S             +IG  L L       D+ + EL    L       +  R +IAV+ 
Sbjct: 125 KSAGLNV----GLAGNIGNSLALQVAMEKHDYYVIELSSFQLD----NMYKFRANIAVLM 176

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +   +++   AK  I +            DD        K         ++
Sbjct: 177 NITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFA 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K   A   +   +    +       Q           G H   N L      ++    
Sbjct: 237 AVKEDGAIAYVEDGEVEINEPIAFNMEQE-----ELALHGTHNLYNSLAAGISANLAGIK 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   KALS F   E R               I++S   N  S   A+  ++        
Sbjct: 292 KEDIRKALSDFKGVEHRL---EKVATVRGIQFINDSKATNVNSCWYALQSMTT------- 341

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + + +LG     G+   + + ++ E L     S +   G H   L +   R  + V   +
Sbjct: 342 KTVLILG-----GKDKGNDYTEI-EELVRTKCSALIYLGLHNEKLHEFFDRFGLPVADVQ 395

Query: 429 T-MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           T M             G+ V++    +S             F + +  L
Sbjct: 396 TGMKDAVEAAFQLAKKGETVLLSPCCASFDLFKSYEDRGDQFKKYVREL 444


>gi|281492399|ref|YP_003354379.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
 gi|281376063|gb|ADA65554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Lactococcus lactis subsp. lactis KF147]
          Length = 483

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/477 (13%), Positives = 145/477 (30%), Gaps = 65/477 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
            F ++  A   +    + +   + +S DSR       FFA KG ++   +++   ++  A
Sbjct: 16  NFREISSA-GEYYFNWLKEVNFDQLSYDSRKSTENTLFFA-KGLNFK-KEYLTD-LE--A 69

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTK 123
              V   D       +++P   V DV  A+  +A +     ++K   +A+TG+ GKTT+ 
Sbjct: 70  AFYVSEFDY-----EVALPAIIVTDVKRAMALIAASFYDFPQNKLKTLALTGTKGKTTSA 124

Query: 124 EMLTIALSS-----------IKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIF 165
                 L              + T      + + +  P       +    +   +   + 
Sbjct: 125 YFAKAILDKMNGGKTALLSTAQTTLDGKNYFKSELTTPESLDLLEMMAKALTTGMTHLVM 184

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTI 223
           E+  S         + +   + V   I+P H+       +E+    K ++ +        
Sbjct: 185 EV--SSQAYKTERVYGLTFDVGVFLNISPDHIGPVEHPTLEDYFYCKRQLLKNSR---YF 239

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             N + + F ++K +     I   +    S+N   + +     ++ S             
Sbjct: 240 VANSEMNHFAIIKEELKERKIPHAFYGADSENKIIESKGLHFVTDGSVSGAFDIRLLGRF 299

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                         +   + +I        +                      G    ID
Sbjct: 300 NQENALATALATKALGASLENIHDGLALAVVPGRMELL-----------TAKNGAHIYID 348

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++N       +  +++  +  H  G+ + VLG     GE  +     + E      +  
Sbjct: 349 YAHNG-----LSLENLVEVVEEHHAGQLVLVLGSTGNKGESRRKDFGQVIE--KHPRLDV 401

Query: 404 VWLSG----FHVLALKDALPRSI-HVHYSE-TMDGLFLFIQSSLVD-GDVVVV--KS 451
           +  +          + D +   +      E   +       S      D V++  K 
Sbjct: 402 ILTTDDSNREDPKIIADEIASFVSRTLDFELDRELAIKKAVSKTKSTDDAVIIAGKG 458


>gi|225028113|ref|ZP_03717305.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
 gi|224954583|gb|EEG35792.1| hypothetical protein EUBHAL_02383 [Eubacterium hallii DSM 3353]
          Length = 453

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 130/383 (33%), Gaps = 45/383 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +K  I AITG+ GKTTT  ++   L    K+   +     +IG+P T   +
Sbjct: 101 ELAAHF---AKGKIAAITGTNGKTTTTALVGSILREYYKSVFVV----GNIGIPFTSVAL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               +  +    +S        T   +P ++ +  + P HL     +E  A  K  I + 
Sbjct: 154 DT-TEDSVIAAEISSF--QLETTIDFQPEVSAVLNVTPDHLDRHGTMEVYADTKFSISKK 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             K   I LNYDD     +  K+ A  +         +    +   +    +   + V  
Sbjct: 211 QNKEQVIVLNYDDPITREMAKKATARPVMFSRLEELDEGIVLRGDTFIIKEDGKELPVCT 270

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +G H  +N+L  +GI   +   V+    A+  F   E R          
Sbjct: 271 -----TSEIKLLGSHNHENILAAIGITYYMGVPVEQIRDAVMKFTAVEHRI---EYVDTV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   NP +    IS +++ +    G            G   +S + +  +  
Sbjct: 323 DGVDYYNDSKGTNPDAAIKGISAMTKPTILLGG------------GYDKKSTYDEWID-A 369

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
               + ++ + G    A+ D        +V +++T +      +     GD V++    +
Sbjct: 370 FHGKVRYLIVMGATAQAIADTAKNHGFHNVIFADTFEEAMNIAKEKARPGDAVLLSPACA 429

Query: 452 S---------NSCGFYRLINLLL 465
           S             F  ++    
Sbjct: 430 SWGMFKNYEVRGKVFKEIVRKFK 452


>gi|78484911|ref|YP_390836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
 gi|118595701|sp|Q31I61|MURD_THICR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78363197|gb|ABB41162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiomicrospira
           crunogena XCL-2]
          Length = 449

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/371 (15%), Positives = 114/371 (30%), Gaps = 42/371 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFEL 167
            I+AITGS GK+T   ++  AL               +IG P         + D  + EL
Sbjct: 101 PIVAITGSNGKSTVTTLVAEALKEAGYAV----GVGGNIGCPALDLLTHPTEFDVYVLEL 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T+ ++   A +  I+  H+  +  +E+   AK  I    E         
Sbjct: 157 SSFQL----ETTYSLQTIAATVLNISEDHMDRYLALEDYIQAKMTILNNTELAVLPLDF- 211

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                     +           FG +       +++    +     +  +  +   V   
Sbjct: 212 ---------ERVGIARPGDEVRFGLNYAEALPPKEYGIVMKNGQAWLGWEDHASVPVTAM 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               +   +     +      D+  A+    V    +G   R +  L Q     I++S  
Sbjct: 263 AQQGLHHQLNALAMMALCRPFDLSDAVF-EKVLKTFKGLPHRTQVVLEQEGVRWINDSKG 321

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +    ++ +  I    +G+ I + G     G   ++   +L + +         L 
Sbjct: 322 TNVGAT---VTAIESIKETLDGQVILIAG-----GVGKEADFNELGQAVVQS-CRQAILF 372

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSC 455
           G     +   LP+   +   +T+    L  ++    GD V+     +S            
Sbjct: 373 GQDKAIIAQQLPQEK-IQLVDTLSEAVLLAKTIAKSGDAVLFSPACASFDQFKNYIERGN 431

Query: 456 GFYRLINLLLE 466
            F   +   + 
Sbjct: 432 AFEAFVQQFIA 442


>gi|167630126|ref|YP_001680625.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
 gi|167592866|gb|ABZ84614.1| udp-n-acetylmuramoylalanine--d-glutamate ligase, putative
           [Heliobacterium modesticaldum Ice1]
          Length = 465

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 89/319 (27%), Gaps = 39/319 (12%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
             + + E+    L           P  ++I  I P HL     +E   + KA IF     
Sbjct: 159 DRWVVAEVSSFQLETTD----QFHPRASLILNITPDHLDRHGDMENYRAIKARIFRNQGS 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LNYDD     L A           S     +   ++                +G 
Sbjct: 215 EDITVLNYDDPLVRTLAA--------DCRSRVLFFSRLQKMEHGAYVDGGMIRFAGPEGD 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +    A N+   L   ++                  +    R          
Sbjct: 267 MAVAAVDRLQIKGAHNVENALAACALTVGLGIAPAVVAQAMIDFQPVEHRMEPVGTVEGV 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   NP +   AI    +      G            G+   S   +LAE++   
Sbjct: 327 AYVNDSKGTNPDASIKAIESYDRPVILIAG------------GKNKGSDFSELAEIIKKR 374

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            +  V L G     L+ AL ++    +   +T D   L        GDVV++    +S  
Sbjct: 375 -VKAVVLVGQAAPVLEAALRKAGVEAIKLVDTFDATVLEAAQMAEPGDVVLLSPACASLD 433

Query: 453 -------NSCGFYRLINLL 464
                      F  L+  L
Sbjct: 434 MFPNYEVRGQVFKDLVRQL 452


>gi|148828299|ref|YP_001293052.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
 gi|166224694|sp|A5UIR3|MURC_HAEIG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148719541|gb|ABR00669.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittGG]
          Length = 475

 Score = 69.1 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 147/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAAEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +       + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVFCPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLSL  +  + 
Sbjct: 346 YGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSL--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|307564692|ref|ZP_07627222.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
 gi|307346620|gb|EFN91927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           amnii CRIS 21A-A]
          Length = 443

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/408 (17%), Positives = 124/408 (30%), Gaps = 53/408 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV  +    IP+          +++  A R  +   +I ITGS GKTTT  ++    
Sbjct: 75  EAPMVQKLIKRGIPII---------SEIEFAGRYTTS-KMICITGSNGKTTTTSLIFHIF 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG  L L        + + EL    L       +  R +IA++ 
Sbjct: 125 KDAGYDV----GLAGNIGKSLALQVAESPHAYYVIELSSFQLD----NMYKFRANIAILL 176

Query: 191 TIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +    E  A+AK  I +   K  +     DD   +    K     ++  +S
Sbjct: 177 NITPDHLDRYEYKFENYANAKMRIIQNQTKEDSFIYWKDDPVIKKELEKFDVKAVQYPFS 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K   +   + +     E+      +     +      G H   N L      +I    
Sbjct: 237 ELKETGSIGYIEEGMYTIEK-----PIPFNMEQEDLSLTGKHNIYNSLAAGIAANIGGIK 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   K+LS F   E R               I++S   N  +   A+  +         
Sbjct: 292 KENIRKSLSDFKGVEHRL---EKVCKVSGVQYINDSKATNVDACWYALESM--------- 339

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
               V   +  +G   +  + D  + L       +   G     L D      I    + 
Sbjct: 340 ----VTPTVLILGGRDKGNNYDAIKDLVKQKCRAIVYLGADNKKLHDNFDNLGIITRDTH 395

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +M       +     GD V++    +S             F  L+  L
Sbjct: 396 SMKDCVAACRELAKSGDTVLLSPCCASFDLFKNMEDRGNQFKTLVRSL 443


>gi|281421048|ref|ZP_06252047.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
 gi|281404966|gb|EFB35646.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           copri DSM 18205]
          Length = 445

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 119/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++   + S             +IG  L L        + + E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIIKSAGYDV----GLAGNIGKSLALQVAETPHKYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R ++A++  I P HL  +   ++    AK  I +   +  +   
Sbjct: 157 LSSFQLD----NMYKFRANVAILLNITPDHLDRYEFKMQNYTDAKMRITQNQTEEDSFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK +       +S  K +     +   K              +  +   
Sbjct: 213 WNDDPIVTKELAKYNLKSHLCPFSEFKEEGCVGFIEDGKYKLN-----FPSDFEMPQADM 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I+  D +T  K LS F   E R               +++S
Sbjct: 268 SLRGKHNIYNSLAAGLACNIVGIDHETLHKGLSDFPGVEHRL---EKVGKFQGVYYVNDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++          I ++G     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMTT-------PTILIIG-----GKDKGNDYNQIKDLVKEKCAGIVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      I V  + +M       Q     GD V++    +S         
Sbjct: 373 L-GADNQKLHDNFDALGIPVRDTHSMKDCVAACQELAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L   +
Sbjct: 432 RGEQFKTLARAI 443


>gi|218768812|ref|YP_002343324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis Z2491]
 gi|30316128|sp|Q9JSZ5|MURD_NEIMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121052820|emb|CAM09167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis Z2491]
          Length = 445

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 125/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +       S     I  F   +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALS---PGISERQPDIEAFK-RNGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGAPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDAFCRAMKRAGREVKWFSLEYEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|269792481|ref|YP_003317385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100116|gb|ACZ19103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 462

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 115/380 (30%), Gaps = 43/380 (11%)

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                  + ++ +TGS GKTTT  +L   L++   +     +   +IG PL    +  + 
Sbjct: 101 FVFPFLGSPVVGVTGSNGKTTTTSILGHVLNAAGVS----TAVAGNIGNPLGSVPLSGET 156

Query: 161 DFGIF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              +  EL    L      +        V+T +AP H+      E    AK  + E    
Sbjct: 157 PSLVVAELSSFQLHWCEEAS----FAGGVVTNLAPDHIDWHGSYENYVLAKRRLIERTGP 212

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +         L       G   +Y     K                 M   ++  
Sbjct: 213 DGFAVVQ-----LADLDILRGGSGSVRLYPLSWDKVEQGVHLDDAAQVALLLMNGSVREL 267

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +G H  +N  M L   +++                      R       G  
Sbjct: 268 FRFDQVRLLGRHNLENAAMALCAANLVLNRPLNGEDGRIGEF--MAPPHRCELVGRYGGV 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T +D+S   N A+    ++ L  +     G ++ +LG     G      +  LA+ +S  
Sbjct: 326 TFVDDSKGTNVAAT---VTALRSLKCDPGGTKVILLG-----GRGKGEDYQVLAQTVSEE 377

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSS----- 452
             S+  L G     + +AL ++         ++D           +GD++++  S     
Sbjct: 378 -CSYAVLYGEEGDRIAEALSKAGFNRWSRVGSLDEAVRVAFQRTKEGDMILL--SPACTS 434

Query: 453 ---------NSCGFYRLINL 463
                        F RL   
Sbjct: 435 WDQYPNYKERGYHFRRLAQE 454


>gi|239813921|ref|YP_002942831.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Variovorax paradoxus S110]
 gi|239800498|gb|ACS17565.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           S110]
          Length = 520

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 76/484 (15%), Positives = 134/484 (27%), Gaps = 83/484 (17%)

Query: 33  DSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG-SLSIPVFGVDDV 91
           DSR +   + F A  G   DG   +  A+ +GA   +V      + G      +     +
Sbjct: 25  DSRPVGAGDGFIAWPGAATDGRRHVASALAQGAAACLVEQQGAEAFGFDGDERIASYPGL 84

Query: 92  LGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIA-----------------LSS 132
             A   +A A          ++A+TG+ GKT+T   L  +                  + 
Sbjct: 85  KAATGPIASAFYDNPSAALEVLAVTGTNGKTSTAWWLAESLSTLAVPGGVRAPRLDGSAE 144

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGI----------------FELGMSHLGEIR 176
                 C       IGVP  L    +     +                  +  S +G   
Sbjct: 145 RGVPSPCAVMGTLGIGVPPELVYTGLTTPDPVMMQRELRALVERGFGACAIEASSIGIAE 204

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 R  +AV T     HL     ++      A                 ++      
Sbjct: 205 RRLDSARIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPGLRAAVINIDDVHGASLCA 264

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            LL+A   AL + T+ + G       +   +     +  +          +    IG + 
Sbjct: 265 NLLEAGIGALDVWTVSAAGAPARLMARDVGYDAQGLRFSVAEHDNDAVERMSTGLIGQYN 324

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N+L  LG +  L   +  A+ A S      GR +R   A       L    Y   P +
Sbjct: 325 VANLLGVLGTLRALGLSLAQAVAACSRLTSVPGRMERVGAADANAAAPLAVVDYAHTPDA 384

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           +  A++ L  ++    G    V G     G         +   ++      V ++  +  
Sbjct: 385 LDKALAGLRPLAQQRGGALWCVFG----CGGDRDPIKRPMMAAVAERQADRVVVTSDNPR 440

Query: 413 ALKDALPRSIHVHYSETMDGLF-LFIQSSLVDG----------------------DVVVV 449
           +              E  D +    +                             DVV++
Sbjct: 441 S--------------ENPDAIISQVLLGLARPEAAQVQPDRAAAIADAIAQAAPQDVVLL 486

Query: 450 --KS 451
             K 
Sbjct: 487 AGKG 490


>gi|322385905|ref|ZP_08059547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
 gi|321270084|gb|EFX53002.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           cristatus ATCC 51100]
          Length = 455

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/375 (18%), Positives = 128/375 (34%), Gaps = 48/375 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +   + D  +
Sbjct: 115 SDAPIIGITGSNGKTTTTTMIAEVLTAGGQN----GLLSGNIGFPASQVAQDASETDTLV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL      EE  +AK  I + +  +  + 
Sbjct: 171 MELSSFQLMGIEAFH----PEIAVITNLMPTHLDYHGSFEEYVAAKWNIQKNMTASDYVV 226

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  K          +  K      + +      +   +  + +       
Sbjct: 227 LNFNQDLAKELAKK----------TAAKVLPFSTKEKVDGAYLDGDVLTFRGEVIMKASE 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D     + ++ F   + R    +           ++
Sbjct: 277 LGVPGSHNVENALATIAVAKLRGIDNQVIRETMAHFGGVKHRL---QYVGEINQVKFYND 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 334 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDIK--GLKKM 380

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   +  +  +        S    GDVV++    +S        
Sbjct: 381 VILGESAARVKRAADQAEVSYLDASDVRDATRKAFSVAEPGDVVLLSPANASWDMYKNFE 440

Query: 453 -NSCGFYRLINLLLE 466
                F  +   L E
Sbjct: 441 VRGDEFLAVFKELKE 455


>gi|297170221|gb|ADI21259.1| UDP-N-acetylmuramyl tripeptide synthase [uncultured myxobacterium
           HF0010_08B07]
          Length = 464

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/452 (11%), Positives = 130/452 (28%), Gaps = 54/452 (11%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            +  +S+ +   + F ++KG    G  ++       A  +++++     +      V  +
Sbjct: 13  NVVTNSKYLKKNDVFLSLKG----GAKYLTSDQANLAKHILLDSSETIDLP----KVIKI 64

Query: 89  DDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY--------- 137
            D+     +          S    + ITG+ GKT+T   L+    S    +         
Sbjct: 65  KDLNSTYLEWIDEYFDIDHSYFDNLFITGTNGKTSTLSFLSQIFKSNDIKHASSGTLGTF 124

Query: 138 ---ACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHLGEIRFLTHLVRPHIAVITT 191
                I +       P+ +  +         +      S +G  +     ++   A+ T 
Sbjct: 125 INDKKIFNNELTTEEPVFIRNLMSKCFRLSIKNIIFEASSIGVDKNRLRGLKIDHAIFTN 184

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I+  HL     +++   AK ++    +         D+     L+         T     
Sbjct: 185 ISRDHLDYHGSLKKYIDAKFKLISNSKAKTVAVNFDDEIISRHLRKMYSKE---TFTISS 241

Query: 252 KSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           K+  +D   R  K   + +     +      +            N+ ++L     +  D 
Sbjct: 242 KNIESDIFFRVLKFYEDGNIEFLAETPWGKFQAASKIESKFNLYNLFLSLPYFQYVNNDC 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     +       GR  +         +            S KA  SV   +    + +
Sbjct: 302 EDFFAQVENLSLPYGRLNKTEKENIYIDY----------AHSPKALESVCKYLYKKKKNK 351

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRS 421
            I V G     G             ++      ++++  +            + D +  +
Sbjct: 352 LIIVFGA----GGERDEGKRYQMGEIADKYCEKIYVTSDNPRNEDPRQIADMIIDGIKGT 407

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +              + L + D++++  K 
Sbjct: 408 DKICIELDRSCAIKNAINELGEEDILLIAGKG 439


>gi|57242128|ref|ZP_00370068.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
 gi|57017320|gb|EAL54101.1| UDP-MurNac-pentapeptide presynthetase (murF) [Campylobacter
           upsaliensis RM3195]
          Length = 477

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 123/359 (34%), Gaps = 31/359 (8%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VP 150
              L K        +  TII IT S GKT+ K  L   L     T+    S N  +G V 
Sbjct: 141 RYFLKKAKHKILKNNHLTIILITASFGKTSIKNFLYELLKDDFITHKSPRSVNTLMGIVK 200

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                +  +    I E G    G+I  L+  + P I +I  I  AHL  F  IE     K
Sbjct: 201 DINENLQENTQIYIAEAGARVKGDILELSSFLEPQICIIGEIGGAHLEYFKNIENTRETK 260

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            E  +      +   +      E                       D  L  +       
Sbjct: 261 LEALQSKRLKQSFLHSSTLKKDE-----------------SNITIYDNLLLNFNANLNGI 303

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              ++L  K        +G   A+N+   +   + L   ++T  K ++     E R +  
Sbjct: 304 DFSLRLNDKEEFFQSSILGAFNAENLCACVCCANYLGIKLETIKKQIANLKAVEHRLQ-- 361

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +++    +ID+ +N N   M  +      ++   +GRR+ V   + E    S+  + 
Sbjct: 362 --IISKEPKFIIDDGFNGNFKGMSESY----HLAKSYQGRRVLVTPGIIE---GSEEDNK 412

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            LA++++      V +S      L +     I+    +    L   +     +GD+++ 
Sbjct: 413 KLAKIINES-FDLVIISAHINATLFEK-ELKINKIILKEKAKLVEILAKHTKNGDLILF 469


>gi|312128117|ref|YP_003992991.1| udp-n-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778136|gb|ADQ07622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 458

 Score = 69.1 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/395 (17%), Positives = 121/395 (30%), Gaps = 35/395 (8%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
              + +   LVVV+  +  S   L   V      +  + ++ +A R      I+AITG+ 
Sbjct: 64  DEVIDR-VQLVVVSPGVPLSKRPL---VLAHKKGVEVIGEIELAYRFCKSKNIVAITGTN 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L    +          +IG+P         +    + E+    L  I+
Sbjct: 120 GKTTTTTLVGEILKKQYEDV----VVCGNIGLPFIDTVETSSENTIFVLEISSFQLETIK 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +     +P +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L 
Sbjct: 176 YF----KPKVGCILNITPDHLNRHMTMENYIKAKMRIFENIDEMGYTVLNYDNNVTRDLI 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             +    I    +         Q                       +    I      N+
Sbjct: 232 GLAKGNVIVFSKT-------KTQFENVVFVENDVIYFTFEGKTQEVMKKDEIFIPGQHNL 284

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L  +S              V     G   R             ++S   N  + + A
Sbjct: 285 ENALAAISCTLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYNDSKGTNTDAAEKA 344

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           IS          G            G            +++   +  V+L G     +  
Sbjct: 345 ISAFKNPIILIAG------------GYDKGESFEKFVSLIAKR-VKKVFLLGQTKHKIAS 391

Query: 417 ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L +    +     T+         S  +GDVV++
Sbjct: 392 ELEKIGYKNFELVSTLKEAVRKSFESAQNGDVVLL 426


>gi|77460896|ref|YP_350403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           fluorescens Pf0-1]
 gi|118595675|sp|Q3K742|MURD_PSEPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77384899|gb|ABA76412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           fluorescens Pf0-1]
          Length = 448

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 136/375 (36%), Gaps = 42/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AI+GS  K+T   ++    ++  K      +   ++G P     +  DV+
Sbjct: 103 FARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +   +A +  I+  H+  +SG+     AK  IF G ++  
Sbjct: 158 LYVMELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGAKQFV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +      +  ++FG SK  DF+    ++ + + ++  + Q    
Sbjct: 214 VNRQDA--------LTRPLMGEGQPCWTFGLSKP-DFKAFGLREENGEKYLAFEFQNLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + AL  F   E R +  R     G    
Sbjct: 265 VRELKIRGAHNQSNALAALALGHAVGLPFDAMLVALRTFAGLEHRCQWVRDLDGVG---Y 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    +G+ + + G   + G   +     +A      + 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIDGKVVLIAGGDGK-GAEFKDLRDPVA-----THC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V L G     + +A+  ++ +  + T+       +++   GDVV++    +S      
Sbjct: 373 RAVILMGRDSDKIGEAIGDAVPLIRATTLVDAVAQCRAAAQPGDVVLLSPACASFDMFNN 432

Query: 453 ---NSCGFYRLINLL 464
                  F R +  L
Sbjct: 433 YEDRGHQFVRAVEDL 447


>gi|325265594|ref|ZP_08132285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
 gi|324982942|gb|EGC18563.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella
           denitrificans ATCC 33394]
          Length = 445

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 106/348 (30%), Gaps = 35/348 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
             R    IIAITGS GKTTT  ++     +       +        +   LAR     D 
Sbjct: 103 LSRQPDKIIAITGSNGKTTTTSLVGHL-CAQCGLDTVVAGNIGTPVLEAWLARKGKPADV 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T L+    A    I+  HL  +  + + A AK  IF G      
Sbjct: 162 WVLELSSFQL----ETTPLLDADAAACLNISEDHLDRYDDLLDYARAKDMIFNG------ 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     ++L A                  +  Q + +   +    +  Q      +
Sbjct: 212 -------KAVQVLNADDAFCRAMKRDGRTVHYFSLQQPQDYHWQAGAGSLHHQEVLLMPQ 264

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N+L  L +   +    D  +  +  F     R         +   T I
Sbjct: 265 TDIPLQGSHNMANVLAALALCESIGLPRDRLLAHVKTFKGLPHRV---EKVGEKNGITFI 321

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  AAI            +   + G M +  + +          +      
Sbjct: 322 DDSKGTNVGATVAAI-------AGLPEKIWLIAGGMGKGQDFTP------LRDVLREKAG 368

Query: 403 HVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+L G     +   L    + + + ET+        +    GD+V++
Sbjct: 369 AVFLIGVDAPKIAADLDGCGVDLVFCETLPEAVQAAFARAQSGDIVLL 416


>gi|302036130|ref|YP_003796452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
 gi|300604194|emb|CBK40526.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Nitrospira defluvii]
          Length = 462

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/435 (15%), Positives = 136/435 (31%), Gaps = 56/435 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           G  +   A++ GA LVV++  +   + +L+      + V G         +LA       
Sbjct: 59  GAQY-ESALE-GADLVVISPGVPTHLDALNRVRARGVRVIG-------ELELASRFL--- 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-----YNNHIGVPLTLARMPVDVD 161
            A ++A+TG+ GK+TT  ++   L    K     G+         +      A      +
Sbjct: 107 TAPVVAVTGTNGKSTTVTLIGKFLQESGKRAFVGGNLGIAASEAALTSVQAKAGSAAPYE 166

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E+    L           P IA I  +   H+  ++ +E+  +AKA IF       
Sbjct: 167 YVVLEVSSFQLETTE----QFHPWIAAILNVTLDHMDRYASVEDYVAAKATIFANQTAGD 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N DD+    L+ ++    +     F +S      +           +      +  
Sbjct: 223 YSLFNLDDARVAALRGRTKGTVLG----FSRSGATVSGVAGATVLDGDLIVTTVRGRREE 278

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +      N+   +  V+       +     +V     G          +     
Sbjct: 279 ICRRSDMRLIGLHNVENVMAAVTYGLLCGCSIEAVRAVLRSFPGLEHALEVVRERRGVRF 338

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  ++  A+  + Q           + G   + G+ S+       E      +
Sbjct: 339 VNDSKGTNVDAVLKALEGIDQ-------PIWLIAGGRDKGGDFSR------LERAIRERV 385

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             + L G     ++ A+        + T+             G+VV++    +S      
Sbjct: 386 KGLILIGEAAGRIQAAMGDFDRCRPAATLRDAVELAAREAQPGEVVLLSPACASFDMFAD 445

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 446 YQDRGRQFKALVQGL 460


>gi|83648524|ref|YP_436959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
 gi|118595658|sp|Q2S9Z0|MURD_HAHCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83636567|gb|ABC32534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hahella chejuensis
           KCTC 2396]
          Length = 446

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 121/375 (32%), Gaps = 42/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     +         +   ++G P+    +  +V+
Sbjct: 102 FSREANAPILAITGSNGKSTVTTLVGEMAKACGVNV----AVGGNLGTPVLDL-LADEVE 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L        A +  ++  H+  ++ +     AK  +F G  +  
Sbjct: 157 LYVVELSSFQLETTDRLGA----LAATVLNLSEDHMDRYADMMAYHLAKLRVFYGCRRQV 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +               L  +   ++   K  +       +  + +W+    +    
Sbjct: 213 LNRDDAL---------AQPPLSREAEITWFTLKTPEPGQYGVLEEKDGAWLAYGAEKLLP 263

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +      + +  ++AL  F     R        ++     
Sbjct: 264 VEQMRIRGKHNWSNALAALALADAAGLEREPCLQALREFTGLTHRC---EWVADKDGVAY 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +     + L+ + P   G  + + G   +  + +               +
Sbjct: 321 INDSKATNVGAT---QAALAGLGPVTSGGIVLICGGQGKGQDFTP------LAPAVKEWV 371

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           S + + G     LK+AL   +    +ETM+            GD+V++    +S      
Sbjct: 372 STLIIIGEDGPKLKEALAGGVMALSAETMEEAVKLAAEKSSPGDLVLLSPACASFDMFKN 431

Query: 453 ---NSCGFYRLINLL 464
                  F + +  L
Sbjct: 432 YEDRGDQFKQWVRAL 446


>gi|332885965|gb|EGK06209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas mossii
           DSM 22836]
          Length = 444

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 134/414 (32%), Gaps = 44/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKE 124
           L++  ++++ S G  +            +  L+     +  + A +I ITGS GKTTT  
Sbjct: 59  LILAASEIIKSPGIPNYAPLVHKAAEKGIPILSEMEFAKRYTSAKMICITGSNGKTTTTS 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L S             +IG          + D+ + EL    L       +  + 
Sbjct: 119 LIYHILKSAGLNV----GLGGNIGRSFARQVAEDNFDYYVLELSSFQL----ENMYSFKA 170

Query: 185 HIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            IA++  I P HL  +   +++   AK  I +   +        +D        K  + G
Sbjct: 171 DIAILLNITPDHLDRYDHDMQKYVDAKMRIVQNQTEEDAFIFWEEDPIVSKEIQKLVSKG 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  ++  K  NA       +   +       ++    E +    G H   N L +    
Sbjct: 231 KQYTFADHKVGNAIAYPENNEIKIDTPKSIFIMK----EDLLALEGTHNLYNSLASGITA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    +    +LS F   E R               I++S   N  S   A+  +   
Sbjct: 287 KLLDITDENLRHSLSDFQGVEHRL---EKVARVRGIQFINDSKATNVNSCWYALQSMKT- 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                 + + +LG     G    + + ++ E L    +  +   G     L       I 
Sbjct: 343 ------KVVLILG-----GTDKGNDYTEI-EQLVKDKVRALVFLGVDNSKLHKFFDGKID 390

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++  + +M        +   +GD V++    +S             F   +  L
Sbjct: 391 NIVDTSSMKDAVEKSYALAQEGDTVLLSPCCASFDLFQNYEDRGDQFKEYVRKL 444


>gi|332829615|gb|EGK02261.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 444

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 132/414 (31%), Gaps = 44/414 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--SKATIIAITGSVGKTTTKE 124
           LV+  T+++ S G  +        +   +  L+     +  + A +I ITGS GKTTT  
Sbjct: 59  LVLAATEIIKSPGIPNYAPLVHKAIEKGIPILSEMEFAKRYTTAKMICITGSNGKTTTTS 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L S             +IG          + D+ + EL    L       +  + 
Sbjct: 119 LIYHILKSAGLNV----GLGGNIGRSFARQVAEENYDYYVLELSSFQL----ENMYSFKA 170

Query: 185 HIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            IA++  I P HL  +   I++   AK  I +   +        +D        K  + G
Sbjct: 171 DIAILLNITPDHLDRYDHDIQKYIDAKMRIVQNQTEADAFIFWEEDPIVSKEIKKLVSKG 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  ++  K  NA   L   +                 + +    G H   N L +    
Sbjct: 231 KQYTFAEHKVGNAIAYLNDHEIDIN----TPNSAFIMEQDLLALEGTHNLYNSLASGIAA 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +L    D    +LS F   E R               I++S   N  S   A+  +   
Sbjct: 287 KLLDITDDNLRHSLSDFQGVEHRL---EKVAKVKGIQFINDSKATNVNSCWYALQSMKT- 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSI 422
                 + + +LG     G    + + ++ E L       +   G     L      +  
Sbjct: 343 ------KVVLILG-----GTDKGNDYTEI-EQLVKDKARALVFLGVDNSKLHKFFDGKVK 390

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++  + +M        +   +GD V++    +S             F   +  L
Sbjct: 391 NIADASSMKEAVEKSYALAEEGDTVLLSPCCASFDLFKNYEDRGDQFKEYVRKL 444


>gi|312874653|ref|ZP_07734677.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325912989|ref|ZP_08175362.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
 gi|311089883|gb|EFQ48303.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners LEAF 2053A-b]
 gi|325477669|gb|EGC80808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           iners UPII 60-B]
          Length = 460

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 133/424 (31%), Gaps = 55/424 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGK 119
           +         + +  IP    ++ L    K A          A   S A  + +TGS GK
Sbjct: 68  IFAKEHFDYLVKNPGIPY---ENPLVQAAKAANVSIITEPEVALAVSSAPYVCVTGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL 178
           TTT  +    + +             +IGVP++   +  +  D  + E+    L      
Sbjct: 125 TTTVMLTQRIMENHLHKLGGHAYAVGNIGVPISEVVLKANANDLLVVEISSFQLM----G 180

Query: 179 THLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + ++P +A I       H+      E   +AK  I +  +K+       +     +L+ 
Sbjct: 181 VNTMKPKVAAIVDIYNNVHIDYHKTFENYVAAKLRITQNQDKSDYFI--ANFDQKNILEQ 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +        +    +S  AD+ +       EQ                   G H  QN L
Sbjct: 239 ELSLTKAHVVTFSEESTQADYYIG------EQYLESQADHEIMKISDIKIPGRHNQQNSL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + + I  I+ A  +     LS F        R +  +      + ++S + N  +   AI
Sbjct: 293 VAIAISKIMGASDEDIRSVLSTFTG---AKHRLQYVMTYNNRRIYNDSKSTNIEAASVAI 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              SQ      G            G        +L  +L   ++  + L G     L DA
Sbjct: 350 PSFSQPEVLIAG------------GLDRGFTFDELVPLLKK-HVKAIVLYGETKYLLADA 396

Query: 418 LPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             ++    +    T+            DGDV++     +S             F + +  
Sbjct: 397 ARKAGIRDIVIVNTLQEAVPRAYDLTNDGDVLLFSPACASWDQFNTFEDRGDFFVKFVKE 456

Query: 464 LLEE 467
           L  +
Sbjct: 457 LKTK 460


>gi|229086477|ref|ZP_04218649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
 gi|228696794|gb|EEL49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-44]
          Length = 450

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              SKA  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISKAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQTAKENEI 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      EE   AKA IF+   K   
Sbjct: 164 VVTELSSFQLMGVE----TFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTKADY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L     + G K ++S  K       +++     +   +          
Sbjct: 220 SVINADDADVMALSEN--SKGQKVLFSATKVIEDGAYIKEDALYFKGEKVVDIKD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +     +  I  L  F   + R                
Sbjct: 273 --IVLPGKHNLENILAAMSIAKLSGVANEAIIAVLKRFTGVKHRL---EYVTTLNNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTILLAG------------GLDRGNEFDDLIPYF--EHVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   + ++       +   DGDV+++
Sbjct: 374 AIVAYGQTAPKLVKAAQKAGLDMIETVDNLEEAVEKAYALSADGDVILL 422


>gi|332975055|gb|EGK11961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella kingae ATCC
           23330]
          Length = 451

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 116/408 (28%), Gaps = 42/408 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+   +  ++   S P +  ++VL              K  ++ I G+ GKTTT  ML  
Sbjct: 79  VIEGILNKNLPYTSGPQWLAENVL-------------HKMWVLGIAGTHGKTTTASML-A 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHI 186
            +       A            ++      D  F + E                  RP  
Sbjct: 125 WVLEYAGYGAGFLIGGVPQNFSVSARLPQNDSAFFVIEADEYDTAFFDKRSKFVHYRPRT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +   H   F  +  I +    +   +   G I  N  +        +        
Sbjct: 185 AILNNLEYDHADIFPDLHAIQTQFHHLVRTVPNQGLIVANGREESLHETIERGC------ 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++  +        +     ++ S+           +    +G H   N L  +     +
Sbjct: 239 -WTPIEWFGNQAGWQIANVGADGSFDVHFKGEHVGHIAWELLGEHNRMNALAVIAAARHV 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLSQI 363
              V  A +ALS F   + R +             F     +     A ++  +     I
Sbjct: 298 GVSVQAACEALSQFKNVKRRMEIKGVENGVTVYDDFAHHPTAITTTVAGLRDKVGAARII 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDALPRS 421
           +          LG M      S              N   V+    G         +P  
Sbjct: 358 AVLEPRSNTMKLGTMKTALSGSLK------------NADQVFCYTGGVDWDVADALVPLG 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
             +H  +  D     I ++   GD ++V  SN  GF  + + LL +  
Sbjct: 406 NKLHVGKDFDEFVNAIVAAAKSGDHILV-MSNG-GFGGIHDKLLAKLK 451


>gi|255020008|ref|ZP_05292081.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
 gi|254970537|gb|EET28026.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Acidithiobacillus caldus ATCC 51756]
          Length = 478

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/456 (17%), Positives = 142/456 (31%), Gaps = 40/456 (8%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V GI  DSR + P + F  +   H DG  F+  A+  GA   ++    +   
Sbjct: 14  LEGAGAVRVCGIESDSRRVRPGQLFVGLHSRHGDGARFLAQALAAGAAAALLQGPELRRD 73

Query: 79  GSLSIPVFGVDDVLGALNK-LAVAARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKT 136
                PV+   +    L + L      + +A  +I +TG+ GK++   ++     +    
Sbjct: 74  TVDGQPVWVHPEAPRLLGEALRRWYHWQGRAPGLIGVTGTNGKSSVTWLIAQLAGAEVIG 133

Query: 137 YACIGSYNNHIGVPLTLARM-----------PVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               G       +  T                    +   E+  SH   +  +  +    
Sbjct: 134 TLGAGPLTALQPLANTTPAAVELWSLLGAARQRRAQWLAMEV-SSHALALERVAGVP-FT 191

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV T ++  HL     +    +AKA++F          LN DD F   L+   H     
Sbjct: 192 AAVFTNLSRDHLDFHGSMAAYGAAKAKLFTNPA-LQLAVLNADDPFSAELRTHLHPDVRI 250

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y FG     D+++R++   +  + + +     +  +    +G   A+N L  L  V  
Sbjct: 251 VGYGFG---AGDYRVREYHPGARATLLVIDTPAGTRPLRIPLMGMANARNFLAALAAVEG 307

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  DVD  + A     P   +    R             + +A          VL  +  
Sbjct: 308 LGMDVDPQVLAALRLPPGRYQRLSPRTPQQPDVLVDYAHTPDA-------LRQVLEDLRT 360

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALP 419
             +GR   V G     G             ++      V L+  +         + + L 
Sbjct: 361 VAKGRITVVFG----CGGDRDRGKRPEMGAVAAALADRVLLTDDNPRSEDPAAIVAEILA 416

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +                      GD V++  K 
Sbjct: 417 GMPAGRAEVCHDRAAAIARAIGEAEHGDWVLIAGKG 452


>gi|294101816|ref|YP_003553674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
 gi|293616796|gb|ADE56950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminobacterium
           colombiense DSM 12261]
          Length = 457

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 123/393 (31%), Gaps = 46/393 (11%)

Query: 65  AGLVVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  +VV++ +      V       IPV G  D                K  +I +TGS G
Sbjct: 72  ADCIVVSSGISPQASVVKKAQGRGIPVIGEID----------FVAPHIKGKVIGVTGSNG 121

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++   L      Y    +   +IG PL+L     ++DF + EL    L      
Sbjct: 122 KSTTTMLIGHLLKK----YGYKTAVAGNIGNPLSLH-ASQNLDFIVIELSSFQLYWAH-- 174

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L++ H+A++T +AP H+           AKA +    E      +   D     L  K
Sbjct: 175 --LLKSHVAIVTNLAPDHIDWHGSFTNYLKAKARLVRLQEPGHWAVVQNRDVDALQLSGK 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           S    +                     C  +    +    K +   +  +      N+  
Sbjct: 233 SAVASLYWEG------QEPVHKTDAYICMGEQEAWLSYNKKELLFDYRDVDLIGRHNLEN 286

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                S L                      R            ID+S   N A+   A++
Sbjct: 287 LAMTASALILGGVPCSNLTKQLSDFIPLPHRCTFVAEINGVRYIDDSKGTNVAASATALT 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +        G ++ +LG     G+     +  LAE           + G     +  AL
Sbjct: 347 SIH-------GPKVVILG-----GQGKGEDYSPLAE-AVKKEARVAIVLGAEKKPIVTAL 393

Query: 419 PRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
             +    +   ++M+       +  + G+ V++
Sbjct: 394 EGAGFARHIEVDSMEDAVKAAMALSLPGETVLL 426


>gi|217967635|ref|YP_002353141.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336734|gb|ACK42527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dictyoglomus
           turgidum DSM 6724]
          Length = 456

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 121/354 (34%), Gaps = 32/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +K  IIAITG+ GK+TT  ++   L +             +IG+P      
Sbjct: 102 ELAYWY---AKVPIIAITGTKGKSTTTTLIGEILKNAGI----PNIVAGNIGLPFISVVK 154

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
            +   + + E+    L +I       RP I++   I P HL  +S ++E   AK+ IF  
Sbjct: 155 DLKEGYFVLEVSSFQLEDIEKF----RPFISLFINIYPDHLDRYSSMDEYMLAKSRIFMN 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            ++     L+YD      L        +     FG  K+ +  +   +  ++  +   + 
Sbjct: 211 QKEEDYAILSYDQEEIINLAKPYKVKKL----FFGFKKHENDGIFYDESRNKVFYKLSER 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G             ++  M   L  + +   +                     +     
Sbjct: 267 YGSLTIPKGIWNRILISNFMASALVGLLLGVEERVIEKTGEDFQGIPFAL----QRIGEL 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   NP S  +AI+ +           I +LG     G        +L E +
Sbjct: 323 NGRVFVNDSKATNPVSTSSAINSI-------NSPIILILG-----GRNKNFDFHELFENI 370

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  V L G     +++      I    +++++            GDV+++
Sbjct: 371 KKSKVRRVVLIGETKEIMRELSEEYEIPYVIADSLEDAVRRAYEVSEPGDVILL 424


>gi|49486023|ref|YP_043244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208175|ref|ZP_06924605.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|60390422|sp|Q6GA29|MURD_STAAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49244466|emb|CAG42894.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|296886914|gb|EFH25817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|329728830|gb|EGG65251.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIIYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|21282795|ref|NP_645883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MW2]
 gi|300912253|ref|ZP_07129696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|30316062|sp|Q8NX35|MURD_STAAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21204233|dbj|BAB94931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MW2]
 gi|300886499|gb|EFK81701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIIYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|325956500|ref|YP_004291912.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
 gi|325333065|gb|ADZ06973.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           acidophilus 30SC]
          Length = 459

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 110/378 (29%), Gaps = 45/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGI 164
           S+A  + +TGS GKTTT  +    L    +          +IGVP++         D  +
Sbjct: 111 SEAPYVCVTGSNGKTTTVMLTQRILDHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
            E+    L         + P +A I       HL      E   +AK  +          
Sbjct: 171 VEISSFQLL----GVTDIDPKVAAIVDIYNNVHLDYHKTFENYVNAKLNVTRTQTSDDYF 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             NYD      + AK   +    + +F ++ +        +    Q+   +         
Sbjct: 227 IANYDQKD---ILAKEKKVSPAKMQTFSETDHNADYFIGDEYLESQNEKIM--------- 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               I      N+  +L  ++            ++V     G   R +         + +
Sbjct: 275 KIADIKLPGIHNLQNSLVAIATSKIMGADNDDIVAVLSTFAGAKHRLQYVTTLDGRKVYN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S + N  +   AI    +      G            G        DL  +    ++  
Sbjct: 335 DSKSTNIEAATVAIPAFKEPEVLIAG------------GLDRGFLFDDLVPLFKK-HVKA 381

Query: 404 VWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + L G     L DA  ++    +    T+             GDV++     +S      
Sbjct: 382 IVLYGETKYLLADAARKAGVKDIVIVNTLQEAVPRAYELTEPGDVLLFSPACASWDQFRT 441

Query: 453 ---NSCGFYRLINLLLEE 467
                  F R +  L  +
Sbjct: 442 FEERGDYFVRFVKELKTK 459


>gi|198274310|ref|ZP_03206842.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
 gi|198272800|gb|EDY97069.1| hypothetical protein BACPLE_00454 [Bacteroides plebeius DSM 17135]
          Length = 443

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 114/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKKAGLNV----GLAGNIGQSLAYQVAECNYDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYGFEMQNYVDAKFRIIQNQTDDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    +        + +         + +    +     +   
Sbjct: 213 WNDDPIIQKELHKYGIHGQYFPF-----AEKNEEGVAAFTEENKVYFTRPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      +I     +   +AL+ F   E R               I++S
Sbjct: 268 ALTGTHNLFNSMAAGISANIAGIRKECIREALNDFKGVEHRL---EKVARVKGVDYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     S + 
Sbjct: 325 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCSGLI 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L D      + +   ++M        +    G+ V++    +S         
Sbjct: 372 FLGLHNEKLHDFFDNFGLPIVDVQSMPDAVNAAYNMAKKGETVLLSPCCASFDLFKSYED 431

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 432 RGDQFKECVRNL 443


>gi|145633134|ref|ZP_01788866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145635587|ref|ZP_01791285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229844909|ref|ZP_04465047.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
 gi|144986360|gb|EDJ92939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 3655]
 gi|145267149|gb|EDK07155.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittAA]
 gi|229812290|gb|EEP47981.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 6P18H1]
          Length = 437

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 124/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A I  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATILNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRAALRHFKGLDHRF---QLAHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG     G+   +   +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLG-----GDGKGANFSELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFETMEQAIEFLRPTLQSGDMVLL 409


>gi|293391359|ref|ZP_06635693.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951893|gb|EFE02012.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 497

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 146/438 (33%), Gaps = 64/438 (14%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIG------SLSIPV 85
           R I      F         GH     A +   GA +VV+++ +              IPV
Sbjct: 79  RLIKAGANVFI--------GH----QA-ENIVGASVVVISSAIHGDNPEVMAAKDARIPV 125

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                   A   LA   R R     IA+ G+ GKTTT  M+++  +        +     
Sbjct: 126 IQ-----RA-QMLAELMRFRHG---IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLV 176

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIE 204
                        +   G     ++   E       ++P I+++T I P H+       +
Sbjct: 177 K--------SAGTNAHLGCSRYLIAEADESDASFLHLQPMISIVTNIEPDHMDTYHGDFD 228

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E+          L   G   L  DD     L      L  + + ++G S+NAD+++  ++
Sbjct: 229 EMKQTYVNFLHNLPFYGLAVLCADDEVLMELVP----LVGRQVITYGFSENADYRIEDYQ 284

Query: 265 QC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           Q   +  +  +   G+ ++V+ +  G H A N    L +        D  + AL+ F   
Sbjct: 285 QTGFQGHYTVICPNGERIDVLLNVPGRHNALNATAALVVAKEEGIKNDAILAALADFQGA 344

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R  +    +      ++ + Y  +P  +   I    Q   +       V+        
Sbjct: 345 GRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENK----RIVMIFQPHRYS 400

Query: 384 LSQSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETM 430
            ++    D  +VLS   +  +            + G    AL  ++     V        
Sbjct: 401 RTRDLFDDFVQVLSQ--VDVLIMLDVYPAGEAPIVGADSKALCRSIRNLGKVDPILVSDT 458

Query: 431 DGLFLFIQSSLVDGDVVV 448
           + L   +   + DGD+++
Sbjct: 459 EQLGEVLDQIIQDGDLIL 476


>gi|254515243|ref|ZP_05127304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
 gi|219677486|gb|EED33851.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium NOR5-3]
          Length = 456

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 110/366 (30%), Gaps = 44/366 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A +I ITGS  K+T  EML   + +  +      +   ++GVP     +    +F + EL
Sbjct: 117 APVIGITGSNAKSTVTEMLGAMVQAAGRR----TAVGGNLGVPALDL-LDDQTEFYVLEL 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L         +   +A +  + P HL     +     AK  IF G         + 
Sbjct: 172 SSFQL----ERAGPLNLEVATVLNLTPDHLDRHGSMPLYHQAKHRIFNGCRAVVFNVDDP 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                         L         +    +      +    +  +    +          
Sbjct: 228 LT---------IPPLAAGRRQVSWRMGEPELTGFGLRLVDGEQMIVEGFEPLMRADEVSL 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  L + + +    D  +  L  F   E R       L +     I++S  
Sbjct: 279 PGRHNLANALAALALGAAIDLPRDAMLSVLRSFKGLEHRC---ELVLEREGVRWINDSKA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  AAI+ L             +L      G    +    LA      +   V L 
Sbjct: 336 TNVGAALAAINGL-------GAEHRLIL---IAGGRDKGADFRSLAP-AVAAHCEVVLLI 384

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSC 455
           G     +  AL  S     +ET++       +    GD+V++    +S            
Sbjct: 385 GEAADGIATALGASCDTVIAETLEHAVELAAARARSGDIVLLSPACASFDQFASYTHRGE 444

Query: 456 GFYRLI 461
            F +L+
Sbjct: 445 RFKQLV 450


>gi|302380550|ref|ZP_07269015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
 gi|302311493|gb|EFK93509.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Finegoldia
           magna ACS-171-V-Col3]
          Length = 441

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 136/407 (33%), Gaps = 50/407 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D    + +  + +  V D+     +LA          I+AITG+ GKTTT  ++T  L+ 
Sbjct: 70  DNPVILKANELNIEVVSDL-----ELAQRIFG--DIKIVAITGTNGKTTTTSLMTKMLND 122

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +    IG+     G+   +     D  + + E     L      T   +P  + I  I
Sbjct: 123 SGRKAISIGNIGV--GMLWEIYNSDKDT-YFVIECSSFQL----ESTKNFKPQYSCIINI 175

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P H+     ++   +AK  + +  ++     LN DD ++E  K  + A       S   
Sbjct: 176 TPDHIDWHGSMQNYVNAKKNVLKNQDENCYTVLNADDEYYEECKKFTKANVYDISTS--- 232

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
               + +   + + +   + +            + IGYH  QN+L  + +  ++  + D+
Sbjct: 233 ---KNVKRGSFIKDNSIYFSDSDCDKIIDLKNVNLIGYHNYQNVLFCVTLAKLIGINDDS 289

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E R        +       ++S   N  +   AI    +         +
Sbjct: 290 IRETLMSFSGVEHRL---EFVRDLSGVKYYNDSKGTNVDASVKAIESFDK--------NV 338

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETM 430
            +L      G   +   +D   +        + L G      +         +++  + M
Sbjct: 339 IILA-----GGYDKKVSLDNFFIAGKDKFKALILMGQTRDLFEQKAKEYGFMNIYLVDDM 393

Query: 431 DGLFLFIQSSLVDGDVVVVK-SS-----------NSCGFYRLINLLL 465
                        GDVV++  +S               F  L+N L 
Sbjct: 394 KQAVTQANKIAESGDVVLLSPASASWGMYNNYEERGNEFKDLVNNLR 440


>gi|315170766|gb|EFU14783.1| UDP-N-acetylmuramyl-tripeptide synthetase [Enterococcus faecalis
           TX1342]
          Length = 516

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/468 (14%), Positives = 139/468 (29%), Gaps = 51/468 (10%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVA 76
                + Q  V  +S DSR +  +  FF  KG ++    ++ +AV+ G  + V       
Sbjct: 38  TLSDTLGQREVTALSYDSRDVTAETLFFC-KGLNFK-EIYLENAVKDGLEIYVSEVPYEV 95

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEML-------- 126
                      V D+   +  L++A     ++K  +I  TG+ GKTT             
Sbjct: 96  PAQLG----IIVTDIKKVMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVAT 151

Query: 127 ---TIALSSIKKTYACIGSYNNHIGVP-------LTLARMPVDVDFGIFELGMSHLGEIR 176
              T  LS++  T      + + +  P       +    +   +   I E+  S      
Sbjct: 152 QQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEV--SSQAYKT 209

Query: 177 FLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              + +   + +   I P H+S       ++    K ++    +              + 
Sbjct: 210 NRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKE 269

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              +     I          +  F +                 G +        G     
Sbjct: 270 TAQQQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKG 329

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L       ++ A  +   + ++                N    T+  + Y  N  S+K
Sbjct: 330 NALSAAIASVLVGASKEECQQGIAATTVPGR----MESLTNTNGATVYVD-YAHNYDSLK 384

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV--- 411
             ++ + +   H +GR I ++G     G+ + S   D   VLS      V  +       
Sbjct: 385 NLLTFVRE--EHPDGRLIVLVGS---TGDKAISRRKDFGRVLSELADVAVLTTDDPASED 439

Query: 412 -----LALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVVVV--KS 451
                  ++  + + + V+             S      D +V+  K 
Sbjct: 440 PAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKG 487


>gi|188584361|ref|YP_001927806.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
 gi|179347859|gb|ACB83271.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium populi
           BJ001]
          Length = 487

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/452 (16%), Positives = 131/452 (28%), Gaps = 40/452 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V G++ DSR + P   F A+ G   DG  F        A                 +P 
Sbjct: 21  PVAGLTADSRRVVPGGVFVAVPGTAADGRLFAAA-----AARAGAVAVAGEGTRPTDLPE 75

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK------ 135
                 V +   AL   A     R   T++A+TG+ GK++  + +   LS + +      
Sbjct: 76  ATAWIEVAEARRALALAAARLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLG 135

Query: 136 ---TYACIGSYNNHIGVPLTLARMPVDVDFGIF-----ELGMSHLGEIRFLTHLVRPHIA 187
                   G+    +  P  +                  +  S  G  +     V    A
Sbjct: 136 TVGIVTNRGAEYGSLTTPDPVTLHQTLARLAGEGITDLAMEASSHGIEQRRLDGVALTAA 195

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     +E+   AK  +F  L   G   +   D  +             T+
Sbjct: 196 AFTNLGRDHLDYHPTVEDYLEAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAGHTV 255

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G+S +    +        QS   +   G+   V    +G    +N L+  G+     
Sbjct: 256 LTTGRSGDFIRLIESGTVGFSQSL-TLAHDGREYRVRLPLVGGFQVENALVAAGLALSTQ 314

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         +      G   R            + + Y   P +++  ++    + P  
Sbjct: 315 AGAADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD-YAHKPEALEHVLTA---LRPFA 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL------ALKDALPRS 421
            G+ + V G     G    +    +   ++      V ++  +             L  +
Sbjct: 371 SGQLVVVFG----CGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAA 426

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 427 PGAEEIGDRAEAIRAGVRGLRAGDVLVVAGKG 458


>gi|308373337|ref|ZP_07667555.1| LOW QUALITY PROTEIN: putative Mur ligase family, catalytic domain
          protein [Mycobacterium tuberculosis SUMu005]
 gi|308338020|gb|EFP26871.1| LOW QUALITY PROTEIN: putative Mur ligase family, catalytic domain
          protein [Mycobacterium tuberculosis SUMu005]
          Length = 78

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKGPHYDGHD 55
          M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G   DGHD
Sbjct: 1  MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPGARADGHD 59

Query: 56 F 56
           
Sbjct: 60 H 60


>gi|261839440|gb|ACX99205.1| UDP-MurNAc-pentapeptide sythetase [Helicobacter pylori 52]
          Length = 493

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 131/344 (38%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R +     L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIPGDLILF 485


>gi|218131850|ref|ZP_03460654.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
 gi|217986153|gb|EEC52492.1| hypothetical protein BACEGG_03472 [Bacteroides eggerthii DSM 20697]
          Length = 444

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 127/409 (31%), Gaps = 54/409 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++  +    IP+        +  + A      + A +I ITGS GKTTT  ++    
Sbjct: 75  DAPLILKLKEKGIPII-------SEIEFAGRY---TDAKMICITGSNGKTTTTSLIYHIF 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S             +IG  L L       D+ + EL    L       +  R +IAV+ 
Sbjct: 125 KSAGLNV----GLAGNIGNSLALQVAMEKHDYYVIELSSFQLD----NMYKFRANIAVLM 176

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +   +++   AK  I +            DD        K         ++
Sbjct: 177 NITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIYWNDDPIIRRELEKHGLKAHPYPFA 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K   A   +   +    +       Q           G H   N L      ++    
Sbjct: 237 AVKEDGAIAYVEDGEVEINEPIAFNMEQE-----ELALHGTHNLYNSLAAGISANLAGIK 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   KALS F   E R               I++S   N  S   A+  ++        
Sbjct: 292 KEDIRKALSDFKGVEHRL---EKVATVRGIQFINDSKATNVNSCWYALQSMTT------- 341

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + + +LG     G+   + + ++ E L     S +   G H   L +   R  + V   +
Sbjct: 342 KTVLILG-----GKDKGNDYTEI-EELVRTKCSALVYLGLHNEKLHEFFDRFGLPVADVQ 395

Query: 429 T-MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           T M             G+ V++    +S             F + +  L
Sbjct: 396 TGMKDAVEAAFQLAKKGETVLLSPCCASFDLFKSYEDRGDQFKKYVREL 444


>gi|282918881|ref|ZP_06326616.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
 gi|282316691|gb|EFB47065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C427]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|49483346|ref|YP_040570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425237|ref|ZP_05601662.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257427897|ref|ZP_05604295.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257430530|ref|ZP_05606912.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433291|ref|ZP_05609649.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436133|ref|ZP_05612180.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282903735|ref|ZP_06311623.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905499|ref|ZP_06313354.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282908474|ref|ZP_06316304.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282910756|ref|ZP_06318559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282913959|ref|ZP_06321746.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924004|ref|ZP_06331680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|283957926|ref|ZP_06375377.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|293500992|ref|ZP_06666843.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|293509950|ref|ZP_06668659.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|293526539|ref|ZP_06671224.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|295427669|ref|ZP_06820301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297591373|ref|ZP_06950011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|60390436|sp|Q6GHQ2|MURD_STAAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49241475|emb|CAG40161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271694|gb|EEV03832.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257274738|gb|EEV06225.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278658|gb|EEV09277.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281384|gb|EEV11521.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284415|gb|EEV14535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M876]
 gi|282313976|gb|EFB44368.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C101]
 gi|282322027|gb|EFB52351.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M899]
 gi|282325361|gb|EFB55670.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WBG10049]
 gi|282327536|gb|EFB57819.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus WW2703/97]
 gi|282330791|gb|EFB60305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Btn1260]
 gi|282595353|gb|EFC00317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus C160]
 gi|283790075|gb|EFC28892.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|290920611|gb|EFD97674.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095997|gb|EFE26258.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 58-424]
 gi|291467400|gb|EFF09917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus M809]
 gi|295128027|gb|EFG57661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus EMRSA16]
 gi|297576259|gb|EFH94975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312438440|gb|ADQ77511.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315194069|gb|EFU24462.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|15924173|ref|NP_371707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926766|ref|NP_374299.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650295|ref|YP_186059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus COL]
 gi|82750790|ref|YP_416531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus RF122]
 gi|87160865|ref|YP_493774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88194889|ref|YP_499689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148267675|ref|YP_001246618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150393733|ref|YP_001316408.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221305|ref|YP_001332127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979504|ref|YP_001441763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509360|ref|YP_001575019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221140645|ref|ZP_03565138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253733578|ref|ZP_04867743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005970|ref|ZP_05144571.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257795761|ref|ZP_05644740.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|258415985|ref|ZP_05682255.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|258419732|ref|ZP_05682699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|258438774|ref|ZP_05689927.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|258444520|ref|ZP_05692849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|258447647|ref|ZP_05695791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|258449489|ref|ZP_05697592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|258451881|ref|ZP_05699902.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|258454868|ref|ZP_05702832.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|262048756|ref|ZP_06021638.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|269202798|ref|YP_003282067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282892669|ref|ZP_06300904.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|282916433|ref|ZP_06324195.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282919964|ref|ZP_06327693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282929228|ref|ZP_06336803.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|283770245|ref|ZP_06343137.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|284024107|ref|ZP_06378505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848176|ref|ZP_06788923.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|295407121|ref|ZP_06816922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|296276141|ref|ZP_06858648.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245993|ref|ZP_06929852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|304381257|ref|ZP_07363910.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|60392791|sp|P0A089|MURD_STAAM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392792|sp|P0A090|MURD_STAAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60392793|sp|P0A091|MURD_STAAU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900659|sp|Q5HGP8|MURD_STAAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063260|sp|Q2FHQ4|MURD_STAA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063261|sp|Q2FZ92|MURD_STAA8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063262|sp|Q2YXD9|MURD_STAAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224766|sp|A7X1C4|MURD_STAA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|172048845|sp|A6QG83|MURD_STAAE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082916|sp|A6U103|MURD_STAA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082917|sp|A5IS69|MURD_STAA9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189082918|sp|A8Z3M4|MURD_STAAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2271510|gb|AAC46291.1| UDP-N-acetylmuramoyl-L-alanine : D-glutamate ligase [Staphylococcus
           aureus]
 gi|13700982|dbj|BAB42278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus N315]
 gi|14246953|dbj|BAB57345.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|57284481|gb|AAW36575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus COL]
 gi|82656321|emb|CAI80735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus RF122]
 gi|87126839|gb|ABD21353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202447|gb|ABD30257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|147740744|gb|ABQ49042.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946185|gb|ABR52121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374105|dbj|BAF67365.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156721639|dbj|BAF78056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160368169|gb|ABX29140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253728448|gb|EES97177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789733|gb|EEV28073.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9781]
 gi|257839321|gb|EEV63795.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9763]
 gi|257844317|gb|EEV68699.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9719]
 gi|257848033|gb|EEV72026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9299]
 gi|257850013|gb|EEV73966.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8115]
 gi|257853838|gb|EEV76797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6300]
 gi|257857477|gb|EEV80375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A6224]
 gi|257860489|gb|EEV83316.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5948]
 gi|257863251|gb|EEV86015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A5937]
 gi|259163212|gb|EEW47772.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus D30]
 gi|262075088|gb|ACY11061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269940677|emb|CBI49056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|282319873|gb|EFB50221.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus D139]
 gi|282589187|gb|EFB94284.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A10102]
 gi|282594680|gb|EFB99664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9765]
 gi|282764666|gb|EFC04791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8117]
 gi|283460392|gb|EFC07482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus H19]
 gi|283470393|emb|CAQ49604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ST398]
 gi|285816865|gb|ADC37352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus 04-02981]
 gi|294824976|gb|EFG41398.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9754]
 gi|294967974|gb|EFG44002.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8819]
 gi|297177157|gb|EFH36411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A8796]
 gi|302751006|gb|ADL65183.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340240|gb|EFM06181.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|312829577|emb|CBX34419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ECT-R 2]
 gi|315130974|gb|EFT86958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315196913|gb|EFU27256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141002|gb|EFW32849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320143058|gb|EFW34848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|323440955|gb|EGA98662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O11]
 gi|323442272|gb|EGA99902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus O46]
 gi|329313851|gb|AEB88264.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus T0131]
 gi|329725034|gb|EGG61530.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21189]
 gi|329727477|gb|EGG63933.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|255010087|ref|ZP_05282213.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteroides fragilis 3_1_12]
 gi|313147882|ref|ZP_07810075.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
 gi|313136649|gb|EFR54009.1| D-glutamic acid-adding enzyme [Bacteroides fragilis 3_1_12]
          Length = 444

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 122/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L     + D+ + E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEEEHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IAV+  I P HL  +   ++   +AK  I +          
Sbjct: 157 LSSFQLD----NMYKFRADIAVLMNITPDHLDRYDHCMQNYINAKFRITQNQTSEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K + +   +   +       +   +     +   
Sbjct: 213 WNDDPIIKRELDKHGICAHLYPFSAIKEEGSIAYVEDHEV-----VITAPIAFNMEQEQL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   +ALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKENIRRALSDFQGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEELVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRLGLPVAEVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKYVREL 444


>gi|90407785|ref|ZP_01215963.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
 gi|90311145|gb|EAS39252.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas sp. CNPT3]
          Length = 487

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 148/399 (37%), Gaps = 34/399 (8%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV+T + A+   L +     +  V  A   LA   R R     IAI+G+ GKTTT
Sbjct: 78  GASVVVVSTAIDANNPELLAAEQARIPVVRRA-EMLAELMRYRHG---IAISGTHGKTTT 133

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++       K     +            L     +   G     ++   E       +
Sbjct: 134 TSLIASIFGQAKLDPTFVIGG--------LLNSAGTNAKLGQSRYLIAEADESDASFLHL 185

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P I+V+T I   HL  +    E +        + L   GT  +  DDS  E L  +   
Sbjct: 186 QPMISVVTNIEADHLDTYQGDFEILKDTFVRFIQNLPFYGTAVVCLDDSVVESLIPRF-- 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +   ++G  + AD ++  + Q       +  ++    ++V  +  G H A N    +
Sbjct: 244 --ARQCVTYGFHEQADIRISNFSQLRSHCEFDLHRVNKDVLKVQLNLPGKHNALNAAAAI 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      D +  I+AL  F     R ++Y          L+ + Y  +P  ++A I+ +
Sbjct: 302 AVAMEENIDDEFIIEALHNFEGIGRRFEQYGEFATGRGNVLLVDDYGHHPTEVQATINAV 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA 417
               P        V+         ++  + + A VL+  +   +  V+ +G   +A  D+
Sbjct: 362 RAGWPEK----RLVMAYQPHRYTRTRDLYEEFAHVLAQVDQLLLLDVYSAGEAPIAGADS 417

Query: 418 --------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                   L  +    +  + + L   +   + DGD+V+
Sbjct: 418 RSLCRTIRLQSNKEPIFVPSPEALPAALAEIMEDGDLVL 456


>gi|332663138|ref|YP_004445926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331952|gb|AEE49053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 441

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 111/385 (28%), Gaps = 56/385 (14%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A           I ITGS GKTTT  ++   L++     A       ++G        
Sbjct: 99  EFAARYTRSF---TIGITGSNGKTTTTNLVYHLLATAGMDVAMG----GNVGKSFARIVA 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             D  F + EL    L          RP IA+I  I P HL  +   +E+ A+AK  I +
Sbjct: 152 ERDYPFYVLELSSFQL----EGIREYRPDIAMILNITPDHLDRYDYQLEKYAAAKFNIVK 207

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +   T   N DD                   SF                  +      
Sbjct: 208 AQQAEDTFLYNADDPNVGGQLEHYPTQAKAVPISF---------------QMTEGTRLKV 252

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +G H   N L  + +   +    +   + L+ F        R      
Sbjct: 253 GGYTFDMSTTPLMGRHNYMNALFAVQVALQVGIAPEAIQEGLNTFV---NAPHRLEKVAT 309

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S+  A+  +S+ +    G            G+   + +  L E 
Sbjct: 310 VEGVEYINDSKATNVDSVYYALEAMSRPTVWIVG------------GQDKGNDYGPLLEF 357

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           +    +  V   G     +       + ++  + +              GD V++    +
Sbjct: 358 V-KAKVKAVVCMGLDNRKIVQCFSGIVENIVETGSAVEAVTAAARLASPGDTVLLSPACA 416

Query: 452 S---------NSCGFYRLINLLLEE 467
           S             F   +  L E+
Sbjct: 417 SFDLFNNYEDRGEQFKAAVLKLSEK 441


>gi|225077400|ref|ZP_03720599.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
 gi|224951284|gb|EEG32493.1| hypothetical protein NEIFLAOT_02461 [Neisseria flavescens
           NRL30031/H210]
          Length = 445

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQDDEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQNIPLQGLHNAANVMAAVALCEAVGLQREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALKDK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|197124214|ref|YP_002136165.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
 gi|196174063|gb|ACG75036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Anaeromyxobacter
           sp. K]
          Length = 462

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 115/379 (30%), Gaps = 37/379 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+ ITG+ GK+TT  +    L+              ++G PL+   +
Sbjct: 102 ELAARFLD--GLPIVGITGTNGKSTTTALTGALLA-----RDRRTFVGGNLGTPLSELVL 154

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D  + EL    L  I       R  +A +  + P HL  +  ++  A+AKA +F 
Sbjct: 155 SGEPADAAVVELSSFQLEGIERF----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFA 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +       N  D     L     +      + FG    A  +    +   E + +   
Sbjct: 211 TQQPDDVAVANARDP--RALAMAGASRADLHTFGFGAPAPASARDEGGEPGPEGTAIWFT 268

Query: 276 LQGKSME-VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +G++ E             N    +  V              +      G   R     
Sbjct: 269 PRGRAPERYQLRNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVA 328

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  S    ++      P G  R + ++G     G   ++ +  L  
Sbjct: 329 EGRGVEWVNDSKATNVDSTFVGLAAF----PSGAPRVVLIMG-----GRGKKAPYAPL-R 378

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            L    +  +   G    A++  L           + G           GDVV++    +
Sbjct: 379 PLFGGRVKALLTIGEDAPAIERELGDLAPTEPCGDLAGAVRRAAVLSGPGDVVLLSPACA 438

Query: 452 S---------NSCGFYRLI 461
           S             F RL 
Sbjct: 439 SYDQFANYEERGEAFRRLA 457


>gi|126649728|ref|ZP_01721964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
 gi|126593447|gb|EAZ87392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           B14905]
          Length = 449

 Score = 68.7 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 115/346 (33%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S A  I ITGS GKTTT  ++   L++            N   V   +A+   + D  + 
Sbjct: 110 SDAPFIGITGSNGKTTTTTLIFDMLNN---GSKNPLIAGNIGTVACGVAKEANEDDIIVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L   +      +P I+++T +  AHL      +  A AK  +    +++     
Sbjct: 167 ELSSFQLMGTK----TFKPKISILTNLYDAHLDYHGTFDNYAEAKFAVTRNQDESDYFIY 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D        A+S+A  I           +          ++++ +  Q +        
Sbjct: 223 NADQPIVVGYAAQSNAQKIP---------FSSNGRTVNGISADETTIYWQGEPYMDRANI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +    ++  D     + L+ F     R    +         + ++S
Sbjct: 274 ALPGKHNLENILAAVAACILVGCDKGKMEEVLATFGGVRHRT---QFVREWNGRKIYNDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + K+A+              + +L    + G   +     +       ++  V 
Sbjct: 331 KATNCLATKSALDAFQA--------PVILLAGGLDRGHSFEELRSSM------NHVKGVV 376

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G   L   +            ++ ++    +      +GD++++
Sbjct: 377 AFGETGLRFVEFAKSCGVQQTVIAQNVEDAVHYAAPMSAEGDIILL 422


>gi|304439979|ref|ZP_07399872.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371471|gb|EFM25084.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 431

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 128/405 (31%), Gaps = 55/405 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            + ++ ++   +I +    D+     + A          I+AITG+ GKTT   ++   L
Sbjct: 63  ESKIIKTLEDKNIKII--SDI-----EFASYFYKTKD--IVAITGTNGKTTITTLVNEIL 113

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           + + K+YA        + V      +  D  F + E     L  I        PH+AVIT
Sbjct: 114 NKVGKSYAVGNIGVGVMDV------IDYDPKFIVCEASSFQLAYIDKFH----PHVAVIT 163

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL     +E    AK  I++ LE+   + L     + + + A        +    
Sbjct: 164 NITSDHLDWHKTVENYRKAKENIYKNLEEDDFLILGASCDYVKTINAGVKNTFYYSYDDL 223

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G+            +  + +      +           G H  +N +  +     L  D+
Sbjct: 224 GRPGLFTKDEEIIFRHFDGTL-----ENIMKVSDVFIKGRHNIENAMAAILSAYSLGVDL 278

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  +  +  F   E R             +  ++S   NP S   A+    +      G 
Sbjct: 279 EIIVDTIKNFKGVEHRI---EFVRTFNGISYYNDSKGTNPDSTDVALKAFEKSVLIIGGY 335

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-ALKDALPRSIHVHYSET 429
                      G   +    D     +   I+ + + G      +K+A    I     + 
Sbjct: 336 DK---------GSDFKKLLED-----NKDKITSLVVMGATSELIIKEATELGIETTRVKD 381

Query: 430 MDGLFLFIQSSLVDGD-VVVV---KSS---------NSCGFYRLI 461
           M+       +   +   VV++    +S             F  ++
Sbjct: 382 MEEAVSVATTIARENHSVVLLSPACASWDMYPNYEVRGRHFKEIV 426


>gi|282891539|ref|ZP_06300030.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498507|gb|EFB40835.1| hypothetical protein pah_c180o013 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 449

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 121/410 (29%), Gaps = 51/410 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LVV +  +  +   L +        +  L ++ +A R   +  +I ITG+ GKTT   +L
Sbjct: 73  LVVTSPGVPLTHPVLQLAQAKN---IKILGEIELAFR-SLRNKLIGITGTNGKTTVTLLL 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
           T  L+              ++G PL+           + EL    L  +       +  +
Sbjct: 129 THLLNYAGI----PAKAVGNVGEPLSAEITCSSETVLVVELSSFQLDTL----QSRQLDM 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VI  I P HL  ++ +E+ A +K +I                     L  +  A     
Sbjct: 181 GVILNITPDHLDRYASMEDYALSKMKIK------------SCIKEGAPLYMEEKAFQNYG 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                   +           S+Q  + +     S+  + +          LM      + 
Sbjct: 229 FLQANFPCHLYGYSHNCHLMSDQQHLFLNKNIDSILPIEYRETKSHRLENLMAAY--GLC 286

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A               R          +  ++S   N  ++  AI  +      
Sbjct: 287 REMGIDATLFWEGVSTFNTPPHRIEKVAIFKNVSYYNDSKGTNIDAVMRAIETI------ 340

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
            EG  I + G + +  + S               + H+   G     L   L +S +V  
Sbjct: 341 -EGPIILIAGGVDKGTDFSPWI------SAFANKVKHICAIGQATEKLDRTLSKSFNVVR 393

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            + M        S    GD V++    +S             F   +N L
Sbjct: 394 CQNMHDAVKHASSLAYPGDNVLLSPGCASYDMFENYAHRGKTFREAVNAL 443


>gi|315038048|ref|YP_004031616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|312276181|gb|ADQ58821.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1112]
 gi|327183328|gb|AEA31775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           amylovorus GRL 1118]
          Length = 459

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 75/413 (18%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV     L+IP+    +   AL+         S+A  + +TGS GKTTT  +    L
Sbjct: 86  ENQMVQKAEELNIPII--TEPEIALSC--------SEAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TTIAPA-HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             I    HL      E   +AK  +            NYD      + A+   +    + 
Sbjct: 192 VDIYHNVHLDYHKTFENYVNAKLNVTRTQTSDDYFIANYDQKD---ILAQEKKVSPAKMQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F +                  ++E Q +           G H  QN L+ + I  I+ A
Sbjct: 249 TFSE------TDHNADYFIGDEYLESQNEKIMKIADIKLPGIHNLQNSLVAIAISKIMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           D D     LS F   + R            +    +       S    I   +   P  +
Sbjct: 303 DNDDIAAVLSTFTGAKHR----------LQYVTTLDGRKVYNDSKSTNIEAATVAIPAFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G        DL  +    ++  + L G     L DA  ++    +  
Sbjct: 353 EPEVLIAG-----GLDRGFTFDDLVPLFKK-HVKSIVLYGETKYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F R +  L  +
Sbjct: 407 VNTLQEAVPRAYELTEPGDVLLFSPACASWDQFRTFEERGDYFVRFVKELKTK 459


>gi|257439004|ref|ZP_05614759.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
 gi|257198589|gb|EEU96873.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Faecalibacterium prausnitzii A2-165]
          Length = 467

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 110/385 (28%), Gaps = 51/385 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVD 159
                   I+A+TGS GKTTT  +++    +  +     G+        +P         
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAALLPMLPEVRPE---- 168

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P IAV+T + P HL +   ++E   AK  I      
Sbjct: 169 -DVAVVELSSFQL-----ISMHQSPKIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQNP 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L Y++     ++       +           A  +      C  +  +      +
Sbjct: 223 PCRAVLGYENEISRSMQKDCKGRQVWFTRLHDTDNGAFLRKEDNMLCMAEDGVVTPFLAQ 282

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +               L   +              V     G   R          
Sbjct: 283 KDIKLRGLHNIEN-------LLAAAAAVWGEVPVEAIQKVGSTFTGVEHRIEPVRTLDGV 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   +P    A +    Q      G            G      +  LA  +   
Sbjct: 336 LYYNDSIGTSPTRTIAGLRSFDQKVILIAG------------GYDKHIPYEPLAPEIV-A 382

Query: 400 NISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
           ++  + L G     ++ AL         ++ + +++ M       +++   GD++++  +
Sbjct: 383 HVKDLVLMGATGPRIEKALREDPGFNEAALPIQHADNMQHAVELARAAAKPGDIIILSPA 442

Query: 452 S-----------NSCGFYRLINLLL 465
           S               F  ++N L 
Sbjct: 443 SASFDLYPNFEVRGREFKNIVNALK 467


>gi|330815438|ref|YP_004359143.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
 gi|327367831|gb|AEA59187.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Burkholderia gladioli BSR3]
          Length = 514

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 154/482 (31%), Gaps = 52/482 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILHAVQ 62
           T    L  ++ H+           +  DSR++   + F A      DG      I  A+ 
Sbjct: 13  TIAAALAWLRAHAQPGA------NLYSDSRAVQAGDVFLAYA---VDGVDNRSHIAGALA 63

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
           +GA  V+V  D  A     S     V D+     ++A             + +TG+ GKT
Sbjct: 64  RGAAAVLVQPDGFAIDALDSAVTHAVPDLGALAGEIASGWYGDPSDAMFAVGVTGTNGKT 123

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------I 164
           +  + +  ALS+++   A IG+  +  G+P  L                           
Sbjct: 124 SCTQWIATALSALRTPCAVIGTLGS--GMPGRLVATGFTTPDAPQLQRSLAQLRDEGAKA 181

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
             + +S     +   +     +AV T +   HL      E   +AKA++F        + 
Sbjct: 182 VAMEVSSHALQQGRVNGTAFDVAVFTNLTQDHLDYHRTFEAYEAAKAKLFAWRGLRHAVV 241

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL----RKWKQCSEQSWMEVQLQGKS 280
              D +   LL   +  +         ++   +        + +  +  +   ++    S
Sbjct: 242 NRDDAAGARLLATLAGRVRTVAYGIDERANAPEADRQLIAHEVRATATGTAFRLESSWGS 301

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            EV    +G     N+L  LG + +     + A+  L       GR +R    +      
Sbjct: 302 AEVEVGTLGLFNVSNLLAVLGTLLVADVPFEAALAELRRLESVNGRMQRLGGRVANDEPL 361

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y   P +++  +  L  I+    G  + + G     G    +    L   ++   
Sbjct: 362 VVVD-YAHTPDALEKTLEALRPIAEARGGALVCMFG----CGGDRDATKRPLMGGIAERL 416

Query: 401 ISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
              V ++  +  +         +   +         E      L         DVV++  
Sbjct: 417 ADRVVVTSDNPRSEPPLAILEQIVAGMKTPGAALRIEDRASAILQAVRGAAREDVVLLAG 476

Query: 450 KS 451
           K 
Sbjct: 477 KG 478


>gi|319897397|ref|YP_004135594.1| udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Haemophilus
           influenzae F3031]
 gi|317432903|emb|CBY81269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Haemophilus
           influenzae F3031]
          Length = 437

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 125/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D+   AL  F   + R +    A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAIGINLDSIRTALRHFKGLDHRFQLAHHANGI---RWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + L     +S   +  ETM+    F++ +L  GD+V++
Sbjct: 372 RDGVQLAKFSSQS---YLFETMEQAIAFLRPTLQSGDMVLL 409


>gi|288801604|ref|ZP_06407046.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
 gi|288335646|gb|EFC74079.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica D18]
          Length = 443

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 115/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L       ++ I E
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYD----AGLAGNIGNSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   K  +   
Sbjct: 157 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTKEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +   +S  K   +   + + +   EQ            +   
Sbjct: 213 WNDDPVIKKELEKFDVHAVCYPFSELKENGSIGYIEEGQYTIEQ-----PEPFNMEQEDL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+LS F   E R               I++S
Sbjct: 268 SLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I ++G     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYNSIKDLVKQKCAGIVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      + +  + +M             GD V++    +S         
Sbjct: 373 L-GADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 432 RGEQFKSYVRAL 443


>gi|126726619|ref|ZP_01742459.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
 gi|126703948|gb|EBA03041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2150]
          Length = 465

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/406 (16%), Positives = 120/406 (29%), Gaps = 40/406 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL 130
            ++A+  +  +PV   +D+       A  +         +IAITGS GK+TT  ++   L
Sbjct: 85  KVIAAAWAAGVPV--DNDIGLFFQSFATQSWDNFDQIPKVIAITGSNGKSTTSALMHHIL 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +              +IG  +      +D +  + EL          L   + P +AV T
Sbjct: 143 T----RVGRPSQLAGNIGRGVLDIDPAIDGEVVVLELSSYQTD----LARSLTPDVAVFT 194

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++P HL    G+    +AK  +F        +    +     L    +       +   
Sbjct: 195 NLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEAEGRMLANQLAEGPVDDRVIRV 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +                     + +  +   +          N      + + L    
Sbjct: 255 SVAGKLTGMGWNIFVKKGFLAETRKGKQVASIDLRSVAALPGVHNHQNAAMVYAALRTLG 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH   G   R +          I++S   N  S   A+     I       
Sbjct: 315 LAPKVIEAGFHDFAGLPHRSQPVGEIDGVKYINDSKATNVDSAAMALKAFKNIR------ 368

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V G   E G  S      L  ++   +++  ++ G         L    HV    TM
Sbjct: 369 -WIVGGQAKEGGISS------LVPLM--GDVTRAYVIGTDPKPFLADLTEIDHV-ICNTM 418

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           D       S    GDVV++    +S             F R +  L
Sbjct: 419 DEAVKQAASDANAGDVVLLAPASASFDQYPDFEKRGEDFIRCVEAL 464


>gi|237747018|ref|ZP_04577498.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378369|gb|EEO28460.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 498

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 130/394 (32%), Gaps = 31/394 (7%)

Query: 72  TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            +++A      +PV+  ++    AL  L      + +  +IA+TG+ GKTT   +     
Sbjct: 84  KEILAFAKEHDVPVWSEIEMFAQALKGLEKE--RQYRPNVIAVTGTNGKTTVTSLTGHMC 141

Query: 131 SSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               KT    G+ +   + V L + R     +  + EL    L    F T+ +    A +
Sbjct: 142 RRAGKTVRLAGNISPAALDVLLDVIRKDQLPEIWVLELSSFQL----FTTYSLEADTATV 197

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY- 248
             +   HL     +E   +AK  IF           +         +A   + G      
Sbjct: 198 LNLTQDHLDWHGSMEAYGAAKERIFGEKTVRVLNRGDETVMQMRTSQAPVVSFGTDEPSE 257

Query: 249 --SFGKSKNADFQLRK----------WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             S+G   + D +              K        E ++Q           G H A N 
Sbjct: 258 PGSYGLHLDRDIEWLSVMSPREEEALRKNRKNAVQQEYRIQNLMPAGALRIRGRHNASNA 317

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  L +   +       ++AL  +        R            ID+S   N  +  AA
Sbjct: 318 LAALALCRAIGLPFAPLLQALREYPG---EPHRVELVAIVKDVAYIDDSKGTNVGATVAA 374

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +  L +     E R I + G + +  + S   H      +    +  V L G     + D
Sbjct: 375 VKGLGESEAREERRIILIAGGLGKEQDFSPLSH------VVSRYVKAVLLIGKDAHLIHD 428

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AL    +   Y ++++   L         D+V++
Sbjct: 429 ALSSAGVEQIYCDSLEQAVLRGSEIARKNDIVLL 462


>gi|261378423|ref|ZP_05982996.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
 gi|269145199|gb|EEZ71617.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           cinerea ATCC 14685]
          Length = 445

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 124/412 (30%), Gaps = 50/412 (12%)

Query: 48  GPHYDGHDF----ILHAVQKGAGLV-----VVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
           G  +DG  F    +  A+  G  ++     +            +      D  +  L  +
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQNGGCVLGD--IELLADI 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                 R    +IAITGS GKTT   ++   L         I        +   L R   
Sbjct: 105 V----NRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGK 159

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G  
Sbjct: 160 KADVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG-- 213

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                         ++L A                  +      +    E   ++   + 
Sbjct: 214 -----------DGVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGCLKQGDED 262

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H A N++  + +   +    +  ++ +  F     R         +  
Sbjct: 263 LIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNG 319

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              ID+S   N  +  AAI+ L             +LG M +  + +             
Sbjct: 320 VVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALK 366

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 367 DKAKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYTQAEAGDIVLL 418


>gi|299534670|ref|ZP_07048002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
 gi|298730043|gb|EFI70586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           fusiformis ZC1]
          Length = 449

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 113/346 (32%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S A  I ITGS GKTTT  ++   LS             N   V   +A+     D  + 
Sbjct: 110 SDAPFIGITGSNGKTTTTTLIFDMLSK---GSKNPLIAGNIGTVACGVAKEANQDDIIVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I+      +P IA++T +  AHL         A AK  +    + +     
Sbjct: 167 ELSSFQLMGIK----TFKPKIAILTNLYDAHLDYHGTFNNYAEAKFGVTRNQDDSDYFIY 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D        A+SHA  I           +          ++++ +  Q +        
Sbjct: 223 NADQPIVVGYAAQSHAQKIP---------FSSKGRTANGISADETTIYWQGEPYMDRANI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +    ++  D +   + L+ F     R    +         + ++S
Sbjct: 274 ALPGKHNLENILAAVAACILVGCDKEKMEEVLATFGGVRHRT---QFVREWNGRKIYNDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + K+A+              + +L    + G   +     +       ++  V 
Sbjct: 331 KATNCLATKSALDAFQA--------PVILLAGGLDRGHSFEELRPCM------SHVKGVV 376

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G   L   +            ++ ++    +      +GDV+++
Sbjct: 377 AFGETGLRFVEFAKSCGVQQTVIAQNVEDAVQYAAPMSAEGDVILL 422


>gi|261364816|ref|ZP_05977699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
 gi|288566851|gb|EFC88411.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           mucosa ATCC 25996]
          Length = 445

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 124/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRESKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L  +          +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQNL-------LFVILGGMGKGQDFTP------LRTALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|328954771|ref|YP_004372104.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
 gi|328455095|gb|AEB06289.1| UDP-N-acetylmuramyl-tripeptide synthetase [Coriobacterium glomerans
           PW2]
          Length = 518

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 81/495 (16%), Positives = 144/495 (29%), Gaps = 60/495 (12%)

Query: 2   NPLWTFHDLL-----QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
            P  T   L      + I     G      V G+SIDSR+      F   KG  +    +
Sbjct: 12  TPTVTLELLANELRVRGIACRVTGGP--ALVRGMSIDSRATEMDNLFVC-KGAAFKP-AY 67

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL-----------SIPVFGVDDVLGALNKLAVAARLR 105
           +  A+++GA   +  T   A    L             P   V D+  ++  +A      
Sbjct: 68  LTAAIRRGASAFLCQTQAAAPACDLSAPAELAAAAPDTPGLIVSDLRASMALIAPIIYGH 127

Query: 106 SK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP------------- 150
                 I+ +TG+ GKTT   ML   L +     + +GS     GV              
Sbjct: 128 PDRALRIVGVTGTKGKTTVTFMLRSILRAAGMEPSMVGSIEVDDGVERHESHNTTPEAPD 187

Query: 151 -LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                R  VD    +  + +S           +   +     I   H+S           
Sbjct: 188 LWRHLRNTVDSGRSVMIMEVSSQALKYDRVLGITLDVGCFLNIGSDHISPIEHPNFEDYL 247

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +++    +    +     D   E+LK    A  + TI S  +  +AD +  +    SE 
Sbjct: 248 ASKLRIFDQSETAVVNLDTDHLVEVLKRAQTAGKLVTISS--RRTDADLRADQISVASEH 305

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              ++  + +  E+     G     N L    +   L  D       LS           
Sbjct: 306 IGFDIVERARRHEIALGMSGLFNVDNALAAAALARELGVDYTAIATGLSRARVPGR---- 361

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                +     +    Y  N  S +     +   S + +   IAV G     G+ +    
Sbjct: 362 MERFRSPDGRIVSLVDYAHNELSFRLLFESIE--SEYPDRYVIAVFGAP---GDKAFDRR 416

Query: 390 IDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSL 441
            +L  +        ++      G  V  +   L  +             +        + 
Sbjct: 417 HELPRIAGKSADLLIYTEDDPGGERVEDICAQLADNTPTGTAFEIVVNREQAVERAFEAA 476

Query: 442 VDGD---VVVV--KS 451
              +   +V++  K 
Sbjct: 477 RSHEGPALVLLLAKG 491


>gi|51246751|ref|YP_066635.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Desulfotalea
           psychrophila LSv54]
 gi|62900515|sp|Q6AJ52|MURD_DESPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50877788|emb|CAG37628.1| related to UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Desulfotalea psychrophila LSv54]
          Length = 456

 Score = 68.3 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 114/383 (29%), Gaps = 49/383 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
            LA     R    ++AITG+ GKTT   ++   L +  K          +IGVPL     
Sbjct: 106 ALAAPVLDR---PVVAITGTNGKTTVTSLVGDLLRASGKRVFVG----GNIGVPLLDLLS 158

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +VD  + E+    L     L     PHIA++  ++P HL     +    +AK  +F+
Sbjct: 159 SGDEVDVIVLEVSSFQL----ELAGDFSPHIALLLNLSPDHLDRHGDLAGYRAAKMHLFQ 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               T    ++ DD     L +       + ++ F  + +       ++           
Sbjct: 215 KQGMTDIAIVSGDDPLC--LLSDGCGEASRYLFGFSAASDISVAAGHFEFDFAGQREIY- 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                                L       I  +                    R     +
Sbjct: 272 --------SLRDSALDNRTGWLNAAPAAFIARSLACAKADIERGIAAFTLDAHRMEPVAS 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  ++ +A+  L ++     G                +  +  L   
Sbjct: 324 IAGVQYYNDSKATNTGAVISALQQLVRVILIAGG--------------RDKGDNYRLLRE 369

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
               ++  +   G     L  AL   + V+ + ++        S   +GD V++    +S
Sbjct: 370 AVAGHVRTLICIGEATPLLVAALEDVVQVYRATSLAEAVSLAASFAEEGDSVLLSPACAS 429

Query: 453 ---------NSCGFYRLINLLLE 466
                        F R +  L +
Sbjct: 430 FDMFANYQDRGEQFRRQVLQLQD 452


>gi|282878013|ref|ZP_06286821.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
 gi|281299848|gb|EFA92209.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           buccalis ATCC 35310]
          Length = 443

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 122/372 (32%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++     S             +IG  L L       ++ I E
Sbjct: 101 HSKMICITGSNGKTTTTSLIYHIFKSAGYD----AGLAGNIGRSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  +  IA++  I P HL  +   ++    AK  I +      +   
Sbjct: 157 LSSFQLD----NMYKFKADIAILLNITPDHLDRYDNCMQNYVDAKMRIIQNQTAQDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K +   ++  +S  K K +   + + +   E+            +   
Sbjct: 213 WNDDPIIKRELKKYNIKAVQCPFSELKEKGSIGYIEEGEYTIEK-----PTPFNMEQEAL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+LS F   E R ++            I++S
Sbjct: 268 ALTGKHNIYNSLAAGIATDIAGIRNEVIRKSLSDFPGVEHRLEKVCKVGGVQ---YINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I +LG     G+   + +  + +++    ++ ++
Sbjct: 325 KATNVDACWYALESMRT-------PTILILG-----GKDKGNDYGPIKDLVKEKCVALMY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      I V  + +M             GD V++    +S         
Sbjct: 373 L-GADNSKLHDNFDNLGIPVRDTHSMKECVAACYELAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGDQFKTLVRNL 443


>gi|237709499|ref|ZP_04539980.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|265754705|ref|ZP_06089757.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
 gi|229456555|gb|EEO62276.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           9_1_42FAA]
 gi|263234819|gb|EEZ20387.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           3_1_33FAA]
          Length = 444

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNV----GLAGNIGQSLAYQVAEYNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTPDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +             ++ +    +     +   
Sbjct: 214 WNDDPIIQRELHKYGIHGHYYPFAERKEEGTAAY-----VEQDKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      ++     +   +AL  F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     + + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCTGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L     +  + V   ++M             G+ V++    +S         
Sbjct: 373 YMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGEQFKECVRNL 444


>gi|212692810|ref|ZP_03300938.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|237724907|ref|ZP_04555388.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D4]
 gi|212664599|gb|EEB25171.1| hypothetical protein BACDOR_02309 [Bacteroides dorei DSM 17855]
 gi|229436645|gb|EEO46722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides dorei
           5_1_36/D4]
          Length = 444

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGMNV----GLAGNIGQSLAYQVAEYNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDHQMQNYVDAKFRIIQNQTPDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K    G    ++  K +             ++ +    +     +   
Sbjct: 214 WNDDPVIQRELHKYGIHGHYYPFAERKEEGTAAY-----VEQDKVYFTEPIAFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      ++     +   +AL  F   E R ++            I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANLAGIRKECIREALGDFKGVEHRLEKVCRVRGVD---YINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + I +LG     G+   + + ++A+++     + + 
Sbjct: 326 KATNVNSCWYALQSMKT-------KTILILG-----GKDKGNDYNEIADLVKE-KCTGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L     +  + V   ++M             G+ V++    +S         
Sbjct: 373 YMGLHNEKLHAFFDKFGLPVADVQSMKDAVDAAYRMAKKGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGEQFKECVRNL 444


>gi|319401523|gb|EFV89733.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis FRI909]
          Length = 449

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 79/459 (17%), Positives = 145/459 (31%), Gaps = 80/459 (17%)

Query: 48  GPHY---DGHDFILHAVQK-----GAGLVVVNTDMVASIGSLSIPVFGVDDV-------- 91
           G +    DG+D    A  K     G  ++  +                V +         
Sbjct: 32  GANVKVNDGNDLSQDAHAKDLESMGIEVISGSHPFSLLDDDP----IIVKNPGIPYTVSI 87

Query: 92  --------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                   L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+ 
Sbjct: 88  IEEAAKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNI 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                V   +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +
Sbjct: 147 GY---VASNVAQEVKSDEYLITELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHETL 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E   +AK +I++   K   +  NY     +    +S  L  KT Y   + +     ++  
Sbjct: 200 ENYQNAKKQIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDG 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   +                G H  +N+L  +    I    V   + +L  F   
Sbjct: 256 FIVFNGIRIINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGI 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R    +           ++S   N  + + A++   Q      G            G 
Sbjct: 309 DHRL---QYIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GL 353

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLV 442
              +   +L   +   N+  + + G            +  +V  +  ++     IQ  + 
Sbjct: 354 DRGNEFDELIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVE 411

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
             DVV++    +S               + I+      P
Sbjct: 412 PNDVVLLSPACASWDQYHTFEERG---EKFIDRFRAHLP 447


>gi|304314889|ref|YP_003850036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588348|gb|ADL58723.1| predicted UDP-N-acetylmuramyl tripeptide synthase
           [Methanothermobacter marburgensis str. Marburg]
          Length = 469

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/431 (14%), Positives = 132/431 (30%), Gaps = 55/431 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATIIAI 113
           I  A ++G   ++       +   L +P+  VD +  A N LA++    R  S +  IA+
Sbjct: 47  IQIASERGVAAIITQDLRSDASKVLDVPIILVDRIEIA-NALALSWTINRFASSSRRIAV 105

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  M+   +++  ++        +     +         +    E     + 
Sbjct: 106 TGTNGKSTTTHMINHIITTAGRSSYTNTDSRSEFNTLIDPVVAQHIAEAASREQLEFMVI 165

Query: 174 EIRFLTHL---------------VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           E+  +                  ++P + VIT +A  H+     ++++    +     ++
Sbjct: 166 EVSEVQGWLGRVMRDHAQLMTSAIQPEMVVITNVAMDHIGLVESVDDVFREVSGALRAMD 225

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +G   LN DD     +   +  L      S G                  + +      
Sbjct: 226 -SGVAVLNSDDERVRAMADINPLLRTVFYGSHGP------------VRYTGNGIHCGDDL 272

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  QN L  +     L    +   + +  +   + R       L    
Sbjct: 273 IIQTDELPFTGEHFIQNTLAAITAALELGFSYEDVRRGVETYRALKRRFTH----LMDNP 328

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLS 397
             + D ++N +        +         +GR   V       GE     + + LAE L 
Sbjct: 329 RVIDDFAHNPDGIRATVRSAACDL-----KGRLWVVNAIRGSRGEDINIMNAEALAESLK 383

Query: 398 LYNISHVW-----LSGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSLVDG 444
             ++  +      L       L++             I   + E +      +  +    
Sbjct: 384 DLDVELIVTSSSDLVDEQNRVLENERRVFLHVLDENGIGYTHIENLRDALRRVLENAEPS 443

Query: 445 DVVVVKSSNSC 455
           D V++  +   
Sbjct: 444 DTVLLLGAQGM 454


>gi|298488533|ref|ZP_07006563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298156874|gb|EFH97964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 448

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 119/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPSDAMLASLREFTGLEHRCQWLREHGGVH---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|291542832|emb|CBL15942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           bromii L2-63]
          Length = 463

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/391 (15%), Positives = 111/391 (28%), Gaps = 50/391 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TL 153
           L              IIA+TGS GKTTT  +++  L +             +IG PL   
Sbjct: 103 LTSEMEVFFDLCPCRIIAVTGSDGKTTTTTIISEFLKAAGFNVHLG----GNIGKPLLPE 158

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                D D  + EL    L     ++    P IAV+T +AP HL     ++E   +K  I
Sbjct: 159 IESVNDDDCAVVELSSFQL-----ISMRKSPDIAVVTNLAPNHLDIHKDMQEYIDSKKNI 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                      LN D+             G    +S  ++ +    L     C       
Sbjct: 214 ILHQNAFSKAVLNLDNEITNGFSE--SVRGQLAKFSVKENVSNGAFLDGDTICYNDYGKI 271

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            ++       +            +  +             +                   
Sbjct: 272 TRIMNIHDIKIPGMHNVENYLAAISAVW-----------GLVDAETMTAVAKTFGGVAHR 320

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                     + YN + AS     ++ +      + +   + G     G      +  L 
Sbjct: 321 AEFVREVDGVKYYNDSIASSPTRTALGTL--SLYKQKICIIAG-----GYDKHIPYEPLG 373

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDV 446
            V++   +  + L G     ++ A+  +       I +     M+      +     GD+
Sbjct: 374 PVIND-KVKLLILLGDTAPKIEKAVKEASNYDADEIEIVNVTNMEEAVAVARERSTKGDI 432

Query: 447 VVVK-SS-----------NSCGFYRLINLLL 465
           V +  +S               F  ++N L 
Sbjct: 433 VSLSPASASFGLYKNFEERGNHFKSIVNALK 463


>gi|298694474|gb|ADI97696.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 449

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRVMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|325578823|ref|ZP_08148870.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159647|gb|EGC71779.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 437

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 126/367 (34%), Gaps = 49/367 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D D  + EL 
Sbjct: 107 PIVGITGSNGKSTVTTLVYEMAKAAGIKVGMG----GNIGIPALSL-LNEDCDLYVLELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   E          
Sbjct: 162 SFQL----ETTNSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYYNAETA-------- 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L+ K      +       S   +      K  + + ++  + +          +
Sbjct: 210 ---VVNLEDKLTFGEGENQAKKVVSFAENQADYWLKTENGKQYLMAKEEVILPCDEAILV 266

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  +++    AL  F   + R    + A        I++S   
Sbjct: 267 GRHNYMNILAATALAQAVDINLEAIRIALRQFKGLDHRF---QLAYQTNGVRWINDSKAT 323

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG    +LG   +  + S     +LA++++  +IS  +  G
Sbjct: 324 NVGST-----VAALAGLYVEGTLHLLLGGDGKGADFS-----ELADLINQPHIST-YCFG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S   H  ETM     F++  L  GD+V++    +S             
Sbjct: 373 RDGKQLAALSSQS---HLFETMQQAISFLRPRLKSGDMVLLSPACASLDQFTSFEKRGEE 429

Query: 457 FYRLINL 463
           F RL  L
Sbjct: 430 FTRLAKL 436


>gi|253731802|ref|ZP_04865967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724452|gb|EES93181.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 449

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/459 (16%), Positives = 142/459 (30%), Gaps = 80/459 (17%)

Query: 48  GPHY---DGHDFILHAVQK-----GAGLVVVNTDMVASIGSLSIPVFGVDDV-------- 91
           G +    DG D    A  K     G  +V  +  +     +       V +         
Sbjct: 32  GANVTVNDGKDLSQDAHAKDLESMGISVVSGSHPLTLLDNNP----IIVKNPGIPYTVSI 87

Query: 92  --------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+ 
Sbjct: 88  IDEAVKRDLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNI 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +
Sbjct: 147 GY---VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENL 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E   +AK +I++   +   +  NY                      F   +  D      
Sbjct: 200 ENYQNAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG----- 249

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               +  ++  +             G H  +N+L  +    +    +   I +L+ F   
Sbjct: 250 -IYIKDGFIIYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGI 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R    +           ++S   N  + + A++  +Q      G            G 
Sbjct: 309 EHRL---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GL 353

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLV 442
              +   +L   +   N+  + + G            +   V  +  ++     +Q  + 
Sbjct: 354 DRGNEFDELIPYM--ENVRAMVVFGQTKAKFAKLGNSQGKSVIEANNVEDAVDKVQDIIE 411

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
             DVV++    +S               + I       P
Sbjct: 412 PNDVVLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|262276876|ref|ZP_06054669.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
 gi|262223979|gb|EEY74438.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [alpha proteobacterium HIMB114]
          Length = 460

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/446 (12%), Positives = 126/446 (28%), Gaps = 42/446 (9%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
                DSR +   + FF         + F+   ++K   L+  +  +             
Sbjct: 9   RNFCTDSRLLKRNDVFFDFLSNSKKINPFLKSIIKKKPSLIFSSIKVNYRNS------VI 62

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
             ++      L      +    I A+TG+ GKT+            KK  A IG+     
Sbjct: 63  SKNIRNLYLSLIKKKYKKIPKNIFAVTGTNGKTSVANFFYQLHILNKKPCANIGTLGYFY 122

Query: 148 GVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVITTIA 193
                   +    +  I+               L  S  G  +   + ++    V T  +
Sbjct: 123 NKKRKKNNLTTPSNLDIYNFLNFINKKKIRTVILEASSHGLDQDRLNGLKFKGVVFTNFS 182

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
             HL     ++   ++K ++F    K     +   +   + +  K+    I   Y     
Sbjct: 183 QDHLDYHKSMKAYLNSKLKLFRQNLKKKGNIV--CNDNIKKILIKNKISKISFKYVLDNK 240

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                ++   K+ + ++ +++  +        + IG    +N+  ++ +       +   
Sbjct: 241 IKYPVKIINVKKNNSKTLIKLNFKNNIYTFNINLIGQFQIENLYQSIILALSSGLKIKEI 300

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
            K L    P EGR    +        T+  +  +           VL  +  H   +   
Sbjct: 301 FKVLEKVKPIEGRLNIIKNKKK----TICIDYAHTPDG----LKKVLETLKNHYNKKVNI 352

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRSIHVHYS 427
           V G     G    +        ++    + V L+  +          K            
Sbjct: 353 VFG----CGGNRDTDKRKKMGQIANKLCNKVILTNDNPREEDPKNITKQIFKSVKKAEVI 408

Query: 428 ETMDGLFLFIQSSLVDGDVVVV--KS 451
                          + +V+++  K 
Sbjct: 409 HNRKLAIKKAIKITKEKEVLLIAGKG 434


>gi|218961097|ref|YP_001740872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729754|emb|CAO80666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 472

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 130/386 (33%), Gaps = 47/386 (12%)

Query: 93  GALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             ++++ +  R+++K + IIA+TGS GK+TT  ++   L+ + K          +IG   
Sbjct: 113 ELISEIELGYRIKAKDSKIIAVTGSNGKSTTVSLIHHILTGLGK----KSLLAGNIGDAF 168

Query: 152 TLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
               +     D+ + E+    L     L +  +P +AV+  I P H+  ++  E+ A +K
Sbjct: 169 CSYDIEKPGWDYIVLEISSFQLD----LINSFQPDVAVLLNITPDHIDRYNSFEDYALSK 224

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             IF+  E T T  L +D    +       A  +    S   +  A       +  SE  
Sbjct: 225 VNIFKNQEMTDTAVLFWDSPEVKHFTKDIKARKLYFSLSPNDNAFAYLANNYIQFGSE-- 282

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                      +V           N    +  +  + A +    K        +    R 
Sbjct: 283 ----------TKVPLSYFAIKGPHNYANAMSAMLAVYALIPEPTKIAEAVKGFKSLPHRL 332

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                    +  ++S   N  S+++A++   Q      G            G      + 
Sbjct: 333 EYVDTIKGVSFYNDSKATNTDSVRSALNSFEQPIRIIMG------------GSDKGEDYS 380

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
            LA  L    +   +L+G     ++      I +      +       S   +GD++V+ 
Sbjct: 381 VLAADL-QKKVKKAYLTGDTREKMRKTFSGKIPLECIADFELTVRKAFSDSDEGDIIVLS 439

Query: 450 --KSS---------NSCGFYRLINLL 464
              +S             F  ++  +
Sbjct: 440 PACASFDRFNNYEERGNFFKEIVARI 465


>gi|257455148|ref|ZP_05620386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
 gi|257447481|gb|EEV22486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enhydrobacter aerosaccus SK60]
          Length = 477

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 132/397 (33%), Gaps = 36/397 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +  +  R      ++A+ G+ GKTTT  ML   L         +      +  P  
Sbjct: 93  QFLAEQVLQYRH-----VLAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPLVDTPDE 147

Query: 153 L-ARMPVDVDFGIFELGMSHLGEI--------------RFLTHLVRPHIAVITTIAPAHL 197
              +      +   +    H G                R      RP  A++  +   H 
Sbjct: 148 RLKKAFAHSSYLGSDTTADHEGYFVIEADEYDSAFFDKRSKFVHYRPTTAILNNLEYDHA 207

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
             F  +  I +    +   +   G I +  D    E    K     I        + +AD
Sbjct: 208 DIFPNLAAIQTQFHHMVRMIPSNGKIIMPADTESLEETLKKGCWTPIWRTAIASTNPHAD 267

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           +Q +  KQ  + S  EV   G   +V     G H   N L+ +     +   V  A +AL
Sbjct: 268 WQAKLMKQ--DGSQYEVMFDGHKGQVHWQMSGLHSVNNGLVAIAAAYNIGVSVAQACEAL 325

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS-VLSQISPHGEGRRIAVLG 376
           S F   + R +      N G    + + +  +P +++  +     + + + + +  AV+ 
Sbjct: 326 SNFAGIKRRMELVGTIDNHGKHIEVYDDFAHHPTAIETTLDGAKKRFADNPKRKIWAVI- 384

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNI-SHVWLSGFHVLA--LKDALPRSIHVHYSETMDGL 433
              E    +         +    +I   V       L   + DA+  + +     + D +
Sbjct: 385 ---EPRSNTMKLGTHQGLLAPSASIADQVIWYQPANLDWSVADAIGNAANQQVMTSTDAI 441

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLE 466
              I + + D D V+V  SN  GF     RL+  L +
Sbjct: 442 IEHIAAHIGDDDAVIV-MSNG-GFEGIHGRLVKALQQ 476


>gi|255280636|ref|ZP_05345191.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
 gi|255268573|gb|EET61778.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bryantella formatexigens DSM 14469]
          Length = 500

 Score = 68.3 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/506 (11%), Positives = 122/506 (24%), Gaps = 73/506 (14%)

Query: 1   MNPLWTFHDLL--QAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M        +L  Q +   +        V  ++ DSR + P   F   KG      +F+ 
Sbjct: 1   MITTHDVERILREQGLLCRADKNEEAAPVTWVTCDSREVIPGTLFIC-KGA-----EFLP 54

Query: 59  ----HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
                AV  G    +            ++  F V D+  A+  ++ A          A+ 
Sbjct: 55  EYLLEAVAYGCIAYMSEERWGT---PKTVRGFVVKDIRRAMAVVSAAFFEYEPE---ALK 108

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG----VPLTLARMPVDVDFGIFELG-- 168
            +    T  +  T                    G    V         D      E    
Sbjct: 109 LTGITGTKGKTTTAWYLRAMLDEWQQEKGKKKTGLISSVENFDGNCRSDAVMTTPEAPVL 168

Query: 169 ------------------MSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIAS 208
                              S           +   + +   I+  H         E+   
Sbjct: 169 YELIARVRAAGSEYMTIETSSQALKYHRVDGLHFQVGIFLNISEDHISPGEHRDFEDYFQ 228

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           +K  +              D  + + +  +  A   + + +FG+   A  + R   +   
Sbjct: 229 SKLSLLRQCGTACVNL---DSDYAQQILKE--ARKAQRVVTFGQHHEAQLRYRILPEKDG 283

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +   EV     + +      G    +N +  +    +    V    KAL+          
Sbjct: 284 KQTFEVTCPQFTEQFSLKMRGSFNIENAVAAIAAAQVYGVPVHCMQKALAETTVPGR--- 340

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 +          Y  N  S +     +             ++      G  + + 
Sbjct: 341 -MEVFESGDKKVCAIVDYAHNQLSFQKLFQTVF----QEYRSFHRIITVFGCPGGKALNR 395

Query: 389 HIDLAEVLSLYNISHVWLSGFHV-----LALKDALPR-----SIHVHYSETMDGLFLFIQ 438
             +L  +  +++  +V+++           + D +                         
Sbjct: 396 RRELGVLAGMFS-DYVYVTSDDPGMEDESRIADEVGSYVEMAGGACDCIADRRIAIRSAL 454

Query: 439 SSLVDG---DVVVVKSSNSC-GFYRL 460
                G    +V+V        F R+
Sbjct: 455 EKAGSGTEKTLVLVLG-RGSEKFQRI 479


>gi|167758768|ref|ZP_02430895.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
 gi|167663508|gb|EDS07638.1| hypothetical protein CLOSCI_01110 [Clostridium scindens ATCC 35704]
          Length = 450

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   + + +     +G+  N             +    + E
Sbjct: 108 KGDVLAITGTNGKTTTTSLLGEIMKNYQDDVYIVGNIGNPYTAVAGQMN---ENTITVAE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP ++ I    P HL+    +E   +AK  I           LN
Sbjct: 165 MSSFQL----ESIVDFRPKVSAILNFTPDHLNRHHTMEAYVNAKKNIARNQGPQDYCILN 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D        K  A  +         K    +         +     ++          
Sbjct: 221 YEDGLTREFGKKVKAQVLYFSSQRKLEKGIYLEDGNIIYRDGEEVSVCRVD------ELQ 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N++  + +  +    ++T  K++  F   E R         +      ++S 
Sbjct: 275 LLGTHNYENVMAAVAMAYVYGVPMETIRKSIKEFKGVEHRI---EYVTEKNGVAYYNDSK 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +    I  +++ +    G            G    S + D  E      +  + L
Sbjct: 332 GTNPDAAIKGIQAMNRPTVLIGG------------GYDKDSAYTDWIESFD-GKVKKLVL 378

Query: 407 SGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     +             +++T +   L      + GD V++    +S         
Sbjct: 379 LGATKEKIAKDANACGFKDYLFADTFEEAVLTAAKIAMPGDAVLLSPACASWDMFPSYEV 438

Query: 453 NSCGFYRLINLL 464
               F  ++N L
Sbjct: 439 RGEKFKEIVNSL 450


>gi|298369637|ref|ZP_06980954.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282194|gb|EFI23682.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 445

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 124/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +  Q   +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEQEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  I+ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPREALIEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|145637109|ref|ZP_01792772.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
 gi|145269763|gb|EDK09703.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittHH]
          Length = 475

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 147/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|251792024|ref|YP_003006744.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533411|gb|ACS96657.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter aphrophilus
           NJ8700]
          Length = 476

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 54/443 (12%)

Query: 48  GPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLA 99
           G       FI H+ +   GA +VV+++ +      +       IPV        A   LA
Sbjct: 63  GAKV----FIGHSAENIIGASVVVISSAIHGDNPEVMAAKKARIPVIQ-----RA-QMLA 112

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              R R     IA+ G+ GKTTT  M+++  +        +                  +
Sbjct: 113 ELMRFRHG---IAVAGTHGKTTTTAMVSMIYAQAGLDPTFVNGGLVK--------SAGTN 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLE 218
              G     ++   E       ++P I+++T I P H+       +E+          L 
Sbjct: 162 AHLGCSRYLIAEADESDASFLHLQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLP 221

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQ 277
             G   L  DD+    L  +      + + ++G S+NAD+++  ++Q   +  +  +   
Sbjct: 222 FYGLAVLCADDADLMSLVPQV----GRQVITYGFSENADYRIEDYQQTGFQGHYTVICPN 277

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    +   
Sbjct: 278 GERIDVLLNVPGRHNALNATAALVVAKEEGIKNEAILAALADFQGAGRRFDQLGQFIRPN 337

Query: 338 FFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              ++ + Y  +P  +               V+    PH   R   +  D  ++     +
Sbjct: 338 GKVMLVDDYGHHPTEVGVTIQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDA 397

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGD 445
             +          I      G    AL  ++     V          L   I   + DGD
Sbjct: 398 LIMLDVYPAGESPI-----VGADSKALCRSIRNLGKVDPILVSDTAQLGDVIDQIIQDGD 452

Query: 446 VVVVKSSNSCGFYRLINLLLEEF 468
           +++ + + S    +L   L+E +
Sbjct: 453 LILAQGAGSV--SKLSRQLVERW 473


>gi|332288551|ref|YP_004419403.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330431447|gb|AEC16506.1| UDP-N-acetylmuramate-L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 480

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 145/407 (35%), Gaps = 48/407 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV++ +      +       IPV        A   LA   R R     IA+ G+
Sbjct: 81  AGASVVVVSSAIKPDNPEVIAAREARIPVIQ-----RA-QMLAEIMRFRHG---IAVAGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ +  +  K     +               +     + I E   S    + 
Sbjct: 132 HGKTTTTAMIAMIYAQAKLDPTFVNGGLVKSAGTNAHLGL---SRYLIAEADESDASFLH 188

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I P H+       EE+          L   G   L  DD   + L
Sbjct: 189 -----LQPMVAVVTNIEPDHMDTYHGNFEEMKQTYINFLHNLPFYGLAVLCADDPVLQTL 243

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             K      + + ++G S  AD+++  + Q   +  +  +   G+ ME++ +  G H A 
Sbjct: 244 LPKV----GRQVITYGFSDKADYRIEDYSQTGFQGHYTVICPDGQRMEILLNVPGKHNAL 299

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +      D ++ + AL+ F     R  +    +      ++ + Y  +P  + 
Sbjct: 300 NATAALAVAKEEGIDDESILAALADFQGAGRRFDQLGSFIRPNGKVMLIDDYGHHPTEVN 359

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--------- 405
             I      + HG   +  V+         ++    D  +VLS   +  +          
Sbjct: 360 VTIQA----ARHGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDVLIMLDVYPAGE 413

Query: 406 --LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++G    +L  ++     +   +    + L   +   L DGD+++
Sbjct: 414 APIAGADSRSLCRSIRNLGKIDPIFLADPEQLPEIMDQVLQDGDLIL 460


>gi|302344984|ref|YP_003813337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
 gi|302150055|gb|ADK96317.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           melaninogenica ATCC 25845]
          Length = 443

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/372 (18%), Positives = 116/372 (31%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L       ++ I E
Sbjct: 101 NSKMICITGSNGKTTTTSLIYHIFKDAGYD----AGLAGNIGNSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +   K  +   
Sbjct: 157 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDYKFENYADAKMRIIQNQTKEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     +   +S  K K +   + + +   EQ            +   
Sbjct: 213 WNDDPVIKKELEKFDVHAVCYPFSELKEKGSIGYIEEGQYTIEQ-----PEPFNMEQEDL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+LS F   E R               I++S
Sbjct: 268 SLTGRHNIYNSLAAGIASDISGIKKENIRKSLSDFPGVEHRL---EKVCKVAGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           I ++G     G+   + +  + +++       V+
Sbjct: 325 KATNVDACWYALESMRT-------PTILIIG-----GKDKGNDYNSIKDLVKQKCAGIVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      + +  + +M             GD V++    +S         
Sbjct: 373 L-GADNKKLHDNFDDLGLPIRDTHSMKDCVAACAELAKPGDTVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 432 RGEQFKSYVRAL 443


>gi|90407782|ref|ZP_01215960.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
 gi|90311142|gb|EAS39249.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Psychromonas
           sp. CNPT3]
          Length = 445

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 117/374 (31%), Gaps = 49/374 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ ITGS GKTT   +L    S+     A       +IG P     +  +++  I E
Sbjct: 107 HAKVVTITGSNGKTTVTSLLGEMASASPLNVAIG----GNIGTPALDL-LDPNINLYILE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +   IA I  I+  HL  +   +    +K  I++  +K      +
Sbjct: 162 LSSFQL----ETTTSLNADIATILNISADHLDRYRSYDHYIQSKHIIYQQCKKALFNIED 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +                 A+    +  + + ++++ +  +         
Sbjct: 218 AQTKPLSCALDQ-------------ICFGAENADFQLVKQNNETFISMGSETLLNVKKLK 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +  D +  +  L  +   E R               I++S 
Sbjct: 265 LSGRHNWMNALAALALGDAVGLDKNIMLAVLENYQGLEHRC---EFVAQVHGVRWINDSK 321

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +     + L  +S    G+   +LG   +  + S      +   +       ++ 
Sbjct: 322 GTNVGAT---QAALMGLSQSISGKVHVILGGQGKGADFS--LLRPVFNEVQG----DIFC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +         +   + +       + +   GD+V+     +S           
Sbjct: 373 FGEDAALIASV---DPRIQRVDDLAQAVCLAEQAATAGDIVMFSPACASLDMYKNFMQRG 429

Query: 455 CGFYRLINLLLEEF 468
             F  L+N L +++
Sbjct: 430 DHFKTLVNALEKKY 443


>gi|317504115|ref|ZP_07962117.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
 gi|315664787|gb|EFV04452.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           salivae DSM 15606]
          Length = 443

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 105/343 (30%), Gaps = 31/343 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ ITGS GKTTT  ++     +             +IG  L L       ++ + EL 
Sbjct: 103 KMVCITGSNGKTTTTSLIYHIFKTAGYDV----GLAGNIGKSLALQVAEDPHEYYVIELS 158

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNY 227
              L       +  R +IAV+  I P HL  +    E  A AK  I +   +  +     
Sbjct: 159 SFQLD----NMYDFRANIAVLLNITPDHLDRYDFKFENYADAKMRILQNQTQEDSFIYWN 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   +    K         +S  K + A   +       +             +     
Sbjct: 215 DDPVIQKELEKFETKAFVCPFSEHKEQGAFGYIEDGNYKLD-----YPTPFNMKQEELSL 269

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L      +I     +   K L  F   E R               I++S  
Sbjct: 270 TGKHNLHNSLAAGLAANIAGIKSEAIRKGLGDFPGVEHRL---EKVCKVNGVQYINDSKA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +   A+  ++          I +LG     G+   + +  + + L       +   
Sbjct: 327 TNVDACWYALDSMTT-------PTILILG-----GKDKGNDYTPI-KELVKKKCRAIVYL 373

Query: 408 GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     L D      + +  + +M        +    GD V++
Sbjct: 374 GADNKKLHDNFDDLGVIIKDTHSMKDCVEACHTLAQPGDTVLL 416


>gi|323127721|gb|ADX25018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 452

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 112/346 (32%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S++ I+ ITGS GKTTT  M+   L++           + +IG P   + +     D  +
Sbjct: 110 SESPIVGITGSNGKTTTTTMIADVLNA----GGQSALLSGNIGYPASEVVQKASANDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       +PHIAVIT + P HL      E+  +AK  I   +     + 
Sbjct: 166 MELSSFQLMGID----AFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTADDYLI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN +      L             +         Q        E   +  +         
Sbjct: 222 LNANQEISAALAK----------TTKATVIPFSTQEVVDGAYLEDGMLYFKRHPIMPAAN 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  + +  +     D  ++ LS F   + R    +        T  ++
Sbjct: 272 LGVPGSHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVKHRL---QLVGKIKDITFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   DL   L    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNKKLILIAG-----GLDRGNEFDDLVPDL--RGLKQM 375

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A    ++    +  +             GD +++
Sbjct: 376 IILGESAERMKRAAEMANVPYLEAADVAAATELAFQEAQAGDTILL 421


>gi|326531704|dbj|BAJ97856.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 503

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 7/133 (5%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   +         ++G+  D+  +A  + F  + G    G   +  A +
Sbjct: 222 MTLAELLDESKLVPVAVTGDQDVALSGVQSDATLVAAGDLFVCV-GES--GLAGLTEADK 278

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAA-RLRSKATIIAITGSVGKT 120
           +GA  VV + D+          +  VDD+  AL  L A    R      +I ITG+ G T
Sbjct: 279 RGAVAVVADQDVDIEGTLACRALVIVDDITAALRVLPACLYGRPSKDMAVIGITGTDGVT 338

Query: 121 TTKEMLTIALSSI 133
           T   ++     ++
Sbjct: 339 TASHLVKAMYEAM 351


>gi|145627891|ref|ZP_01783692.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145639341|ref|ZP_01794947.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|144979666|gb|EDJ89325.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.1-21]
 gi|145271644|gb|EDK11555.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittII]
 gi|309751215|gb|ADO81199.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2866]
          Length = 475

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 148/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  ++ +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYIVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|307637428|gb|ADN79878.1| UDP-N-acetyl muramoyl alanyl-D-glutamyl-2,6-di amino
           pimelate--D-alanyl-D-alanine ligase [Helicobacter pylori
           908]
 gi|325996018|gb|ADZ51423.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2018]
 gi|325997613|gb|ADZ49821.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanine ligase
           [Helicobacter pylori 2017]
          Length = 493

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +      T  S          +R  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLTDVSSL--------VRNVQSTLKGTSFEMLIDSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +    P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHQGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKNPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|90416334|ref|ZP_01224266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
 gi|90332059|gb|EAS47273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2207]
          Length = 450

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 121/372 (32%), Gaps = 36/372 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +       +KA ++ ITGS GK+T  +++     +             ++G P+ 
Sbjct: 96  KLLGDV-ELFLEHAKAPVVLITGSNGKSTVTKLVGEMAQASGLKV----GVGGNLGTPML 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +    + EL    L     L    R  I+ I  I+P H+  ++ +++  +AK  
Sbjct: 151 DL-LDDENQLYVIELSSFQL----ELVTDTRGAISAILNISPDHMDRYADLQQYHAAKHR 205

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           IF G  +      +   +    +  K    G+            D           ++W+
Sbjct: 206 IFRGASQVIFNRQDALTNPLLSVAVKLCNFGLNRP---------DLANFGLLDEEGETWL 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L+           G H   N L  L +      D+   +  L+ F     R      
Sbjct: 257 AYGLKPLMRSAELALKGRHNIANALAALALGQAAGLDMAAMLTTLTRFTGLSHRC---EY 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  T ID+S   N  +    ++ L+          I + G   + G+        L
Sbjct: 314 VATVDGVTYIDDSKGTNIGAT---VAALNGFGEDDRANLILIAGGQGK-GQNFTELKAPL 369

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            +      +  + L G    ++ + L  +  +    ++       ++    GD+V++   
Sbjct: 370 GKF-----VKLLALFGEDAQSIAETLSGTTQIETLASLQAAVDCARAVAQPGDIVLLSPA 424

Query: 450 KSSNSC--GFYR 459
            +S     GF  
Sbjct: 425 CASFDMFSGFEE 436


>gi|317132325|ref|YP_004091639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
 gi|315470304|gb|ADU26908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 114/390 (29%), Gaps = 48/390 (12%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A+              IIA+TGS GKTTT  +++  L    +     G+    +   L  
Sbjct: 98  AVTSEMEVFFEVCPCRIIAVTGSDGKTTTTTLISEILKREGRRVHLGGNIGRPL---LPE 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + D  + EL    L  +R       P +AVIT I P HL     + E   AK  I
Sbjct: 155 IETIREDDVAVVELSSFQLISMRRS-----PDVAVITNITPNHLDMHKDMVEYIQAKKHI 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F          LN+D++    +  +    G    +S  +                 S  +
Sbjct: 210 FLHQNGCSKTVLNFDNAITVPMAEEV--RGQCLGFSLKEPPRFGCYTDADGVIWFLSGEQ 267

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   +++  G                      +    ++        G   R    
Sbjct: 268 KHYVMHRDDILLPGSHNVENYMAAAAAVWGLAKPETILGVARSF------TGVEHRIELV 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S    P+   A +   SQ           +L      G   +    D+ 
Sbjct: 322 RELDGVRYYNDSIATTPSRTLAGLRAFSQ---------KVILIA----GGYDKHIPFDVL 368

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDV 446
              ++ ++  + L G     +  A+  +         +     ++      ++    GDV
Sbjct: 369 GPAAVQSVKCLILLGATADKIATAVEGAEGYATGEPPILRVSGLEEAVQTARAQAASGDV 428

Query: 447 VVV---KSS---------NSCGFYRLINLL 464
           V++    +S             F  ++N L
Sbjct: 429 VLLSPACASFDMFKDFETRGDLFKNIVNAL 458


>gi|295394737|ref|ZP_06804952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972333|gb|EFG48193.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 501

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 119/421 (28%), Gaps = 61/421 (14%)

Query: 71  NTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +  ++    +  +PV G V        +LA   R  + A  + ITG+ GKTT   ML   
Sbjct: 115 DQPLLVDAQAKGVPVIGEV--------ELAWRVRGTNAAPWLVITGTNGKTTATSMLASM 166

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             +             +IG PL  A +    +    EL    L     +        A +
Sbjct: 167 FRAAGVN----AVACGNIGSPLLEAVLDPAAEVLAIELASFQLHWQFSMCAHS----AAV 218

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL-----NYDDSFFELLKAKSHALGI 244
             +AP H+      E   + KA ++  + K                  E++         
Sbjct: 219 LNLAPDHVDWHGSYENYVADKARVYSNVMKACVYNREDLATRKLVEDAEVVAGARAVGFG 278

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +   G+    +  L        +    ++L          G        ++  L   +
Sbjct: 279 LGVPGPGEFGLVEDILVDRAFAPNRYSSALELASLDDVAKAAGTTSAPDHYVMNALAAAA 338

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  +     +              R R        T +++S   NP +  AA+     I 
Sbjct: 339 LARSIDLPPVAVRDGLRSFAPGDHRMRVVRTLDDITWVNDSKATNPHAASAALGSFDPIV 398

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G                  +H  +        +  V + G    AL  AL  S   
Sbjct: 399 WIAGGL------------PKGADYHDIVEGF--KDRLRSVVVIGEDDSALSSALEAS--- 441

Query: 425 HYSET---------MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINL 463
            + +T         M+      +     GD V++    +S             F + ++ 
Sbjct: 442 -HVDTIRIEPGPRVMERAVNAARELAQPGDTVLLSPAAASMDQFTNYIERGDAFEQAVSE 500

Query: 464 L 464
           L
Sbjct: 501 L 501


>gi|210622333|ref|ZP_03293102.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
 gi|210154321|gb|EEA85327.1| hypothetical protein CLOHIR_01050 [Clostridium hiranonis DSM 13275]
          Length = 455

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 31/298 (10%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L          +P ++ +  I   H++    +E    AKA +F   +K   
Sbjct: 166 FVTELSSFQL----ESIKDFKPSVSAVLNITEDHMNRHHTMENYIDAKARVFMNQDKNDF 221

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD     L  K +A  +              +  +     E   + + +  K   
Sbjct: 222 CVLNYDDELTRALAEKCNANVVFFSR---------LEKLEKGIYVENGDIIIDIDEKINL 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +      N+   +   ++             V    +    R            +
Sbjct: 273 MKVCELSLPGGHNLENCMAAAAMAYVSGIDIEVIREVLKTFKAVEHRLEFVKEVEGVKYV 332

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   A+           G            G    S + +L E ++  N+ 
Sbjct: 333 NDSKGTNPDSTIKAVQAYENPIILIAG------------GYDKGSTYDELLE-IAKKNVK 379

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
            + L G     +++A  R     +H  E M            +GD+V++    +S   
Sbjct: 380 TLVLLGQTADKIEEAARRIGFTDIHRVEDMKEAVKTCHDIAKEGDIVLLSPACASWGM 437


>gi|315225589|ref|ZP_07867398.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
 gi|314944406|gb|EFS96446.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Capnocytophaga
           ochracea F0287]
          Length = 444

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 105/355 (29%), Gaps = 33/355 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A          I+ ITGS GKTTT  +                    +IG        
Sbjct: 94  EFASQYTDSL---IVGITGSNGKTTTTLLTYHIFKEAGLQV----GLGGNIGYSFAELVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             +  + + E+    L  I        PHIAV+  I P HL  +    E   ++K  I  
Sbjct: 147 TENPPYYVLEISSFQLDGIEHFA----PHIAVLLNITPDHLDRYDYKFENYINSKFRIAM 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +   +  + DD       +          +S  K       L+  K       M   
Sbjct: 203 NQTENDYLIYDADDEVITQWLSTHTIKSKLIPFSIEKELPQGAFLKDNKIYI----MLEN 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +         G H  +N +       ++    ++  ++L  F     R +  +    
Sbjct: 259 QTTEIDVEEISLRGKHNIKNTMAASVAARLVNIRNNSLRESLKGFKGAPHRLEEVKVVDG 318

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +++S   N  S+  A+  +        G            G+   + +  L   
Sbjct: 319 V---TYVNDSKATNVNSVFYALDTIKTPIVWIVG------------GQDKGNDYNSLLPY 363

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVV 449
           +    +  +   G     +  +   +I       +MD      Q    +GD V++
Sbjct: 364 VHE-KVRAIVCLGVDNTPIIQSFYNTIGTLVETRSMDEAVKLAQGFAQEGDTVLL 417


>gi|167614184|gb|ABZ89690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 440

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/348 (20%), Positives = 121/348 (34%), Gaps = 35/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +K  II+ITG+ GK+T   M+                   +IG P+    +    +
Sbjct: 100 FSRETKCPIISITGTNGKSTVATMVKKIAEKSGYKVFLG----GNIGFPVLEM-LNQKAN 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L      T  ++  IAV+  I   HL  +    E             +  
Sbjct: 155 LYILELSSFQL----ETTFSLKSKIAVVLNITEDHLDRYPEGFEQYKKIKLSIYNQAEIC 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I L            K      K   SFG  +N ++ +   K   E++ +  + +    
Sbjct: 211 LIKLKKG-------GKKPFDTQFKKYISFGICQNNNYHINYEK---EKAILYCKNKKVLD 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  GYH  +N L++L I   +  + + AI  L  F     R    +        + 
Sbjct: 261 TSNMFLNGYHNYENALISLAISDAMKFNREIAINTLKQFSGLPHRF---QTVHINNNISW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S K A+  L     + +G    +LG     G+   S    L E      I
Sbjct: 318 INDSKSTNVDSTKVALQNL-----NIKGTIWLLLG-----GDGKSSNFNILKEYFEKLKI 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G   L+L     +     Y ET+    + I   +  GDVV++
Sbjct: 368 -KIYCFGKDGLSLSKLCKK--KSVYVETLKQAIILISKKIQPGDVVLL 412


>gi|319639041|ref|ZP_07993799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
 gi|317399945|gb|EFV80608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria mucosa
           C102]
          Length = 445

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 124/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKIFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DVVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  Q   
Sbjct: 218 VLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLISTQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAIGLPREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|295135636|ref|YP_003586312.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
 gi|294983651|gb|ADF54116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Zunongwangia
           profunda SM-A87]
          Length = 445

 Score = 68.0 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/406 (16%), Positives = 128/406 (31%), Gaps = 52/406 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            M+ ++ +  IPV        +  + A      + A I+ ITGS GKTTT ++    L  
Sbjct: 78  PMIKALRAKGIPVI-------SEIEFAAQY---TSAVIVGITGSNGKTTTTKLTHHILKD 127

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        ++G          +  + + EL    L  I       RPHIAV+T I
Sbjct: 128 GGLQVGM----AGNVGDSFAKQVAETNAGYYVLELSSFQLDGIEKF----RPHIAVLTNI 179

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +    E    AK  I +   K      + DD         +        +S  
Sbjct: 180 TPDHLDRYEYKFENYIEAKFRITKNQTKDDYFIYDADDEVITNWLKTNKIEAQLLPFSLE 239

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +       L       +        +           G H  +N +    +  +L    +
Sbjct: 240 RKLENGAYLENDTIIIK----TENTELTMATSDLTLQGKHNTKNAMAAATVAKLLKIRKN 295

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           T  +++  F   E R       L       I++S   N  +   A+  +       EG+ 
Sbjct: 296 TIRESMESFQGVEHRL---EKVLKINNVQYINDSKATNVNATYYALESM-------EGQT 345

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETM 430
           + +LG     G    + + +L  +++   +  +   G     + ++    +     +++M
Sbjct: 346 VWILG-----GVDKGNVYDELLPLVNE-KVKAIICLGVDNTKIMNSFGNCVETLIETQSM 399

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                        GD V++    +S             F   +  L
Sbjct: 400 SEAVKMAYRLSEKGDTVLLSPACASFDLFENYEDRGRQFKEAVRNL 445


>gi|319411051|emb|CBY91451.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase;
           D-glutamic acid adding enzyme) [Neisseria meningitidis
           WUE 2594]
          Length = 445

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 121/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDAFCRAMKRAGREVKWFSLEYEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +     D+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|167614204|gb|ABZ89707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 439

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IIAITG+ GK+T   M+T    +             +IG P+    +    D
Sbjct: 100 FVREISTPIIAITGTNGKSTVATMITKIAQNSGYN----ALLGGNIGCPVLNL-LHQKRD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKT 220
             I EL    L      T  ++  I+VI  I   H++ +    E+    K  I+ G E  
Sbjct: 155 LYIIELSSFQL----ENTFNLKSKISVILNIHEDHINRYPQGFEQYKKTKLSIYHGAEIC 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +  +  F+           K   SFGK  +  +  +          +  + +   
Sbjct: 211 IMNSHDQLNDIFDD--------KNKHYISFGKKNSDYYIYKNDTSFI----LCCKNEKIL 258

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   GYH   N+L+++ I   +       I  L  F     R +  +   N     
Sbjct: 259 NSSELLLSGYHNYNNVLVSIAIADAMKFSRQYTIYTLKNFSSLPHRFQTIQNKNNID--- 315

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S + N  S + A++ L+      +G    +LG   + G  +      L +  +  N
Sbjct: 316 WINDSKSTNVNSTQVALNSLT-----KKGTIHLLLGGDSKSGNFNI-----LKKYFNKKN 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G   + +     +     Y E +    L I  ++  GD V++
Sbjct: 366 I-KIYCFGKDGVKIFKICKK--KSIYVENLKQAMLLISKTVKSGDTVLL 411


>gi|309379066|emb|CBX22368.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 445

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 122/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGPVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +     R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 158 GKKAGVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                  +      +    E   ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGD 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLIATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYARAEAGDIVLL 418


>gi|189347972|ref|YP_001944501.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlorobium
           limicola DSM 245]
 gi|226711892|sp|B3EIL0|MURD_CHLL2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189342119|gb|ACD91522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chlorobium limicola
           DSM 245]
          Length = 465

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 114/359 (31%), Gaps = 26/359 (7%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A       KA I  ITG+ GKTTT  +L     +             +IGVP +   +
Sbjct: 97  EAASWF---CKARIAGITGTDGKTTTSTLLHRIAEADGMKNDYRAFSVGNIGVPFSSLVL 153

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
            +   D  + EL    L          RP ++VIT I P HL  +   ++  A+AK  I+
Sbjct: 154 DMAPADLAVVELSSYQL----EGCETFRPDVSVITNITPDHLDRYNGDMQLYAAAKFRIY 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                + T+  N+DD       + +       I  FG   +      +     ++  +  
Sbjct: 210 ASQRASDTLVYNFDDPLLRAQFSGNGRGFPFRIVPFGIGNDVPGSGSEEAFFYDEGMIRH 269

Query: 275 QLQGKSMEVVHHGIG----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                  EV          +    N+   L  ++   A       A        G   R 
Sbjct: 270 LTAKGISEVFSGEDFLKSSFRGRHNIYNALAALAAAAALGIEESVARKAISGFSGVEHRQ 329

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +      I++S   N  ++  A+  +        G  + + G     G    + + 
Sbjct: 330 EFVCSLDGVEWINDSKATNVNALLQALDAV-------PGSIVLIAG-----GRDKGNDYT 377

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L + +    +  V   G     +            ++T+D      + S   G  V+ 
Sbjct: 378 VLFD-VVRRKVVTVIAIGEAREKILQVFEGITRTAGADTLDDAVALARESAEKGQTVLF 435


>gi|116513831|ref|YP_812737.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122275399|sp|Q04B73|MURD_LACDB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116093146|gb|ABJ58299.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 460

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 127/414 (30%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTQQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +  G  +  + +   +    ++L  +  A   K +
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNV--GRFQKTSDYFLANFDQKDILAREEKATKAKIL 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF + +      +  M                G H  QN L+ +GI S++ 
Sbjct: 250 TFSENDPVADFYIGQDYLMHGEEKMMKIAD-------IKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFVFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|109947254|ref|YP_664482.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
 gi|109714475|emb|CAJ99483.1| D-alanyl-D-alanine-adding enzyme [Helicobacter acinonychis str.
           Sheeba]
          Length = 493

 Score = 68.0 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 29/360 (8%)

Query: 93  GALNKLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
               ++A       K   +IAITGS GKT+TK  L   L +    +A   S N  +G+  
Sbjct: 152 KQYLQIAKDKIASLKSLKVIAITGSFGKTSTKNFLHQILQTKFNVHASPKSVNTLLGIAN 211

Query: 152 T-LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                +    +  I E G  + G+I+ +THL+ PH+AVIT +   HL  F  +E I   K
Sbjct: 212 DINQNLEDSSEIYIAEAGARNKGDIKEITHLIEPHLAVITEVGEQHLEYFKTLENICETK 271

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           AE+ +          N      E +K  +        YS          ++  +   + +
Sbjct: 272 AELLDSKR-----LENAFCYSIETIKPYAPNNAPLIDYSSL--------VKNIQSTLKGT 318

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           + E+ L G         +G   A N+ + + I   L  + +   + +   +P   R    
Sbjct: 319 FFEMLLDGVWESFGTKVLGKFNAYNIALAILIAKHLGLETERIKQLVLNLNPIAHRL--- 375

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L      +ID+S+N N   M   I     ++   EGR++ V   + E    S     
Sbjct: 376 -QLLEVNQKVIIDDSFNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE--- 427

Query: 391 DLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            LA+ ++        ++G  +   +   L +   +   +    L   +Q++ + GD+++ 
Sbjct: 428 TLAKKINEV-FDVAIITGELNSKVIASHLKKPQKI-LLKDKGQLENILQATTIQGDLILF 485


>gi|317122782|ref|YP_004102785.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
          marianensis DSM 12885]
 gi|315592762|gb|ADU52058.1| UDP-N-acetylmuramyl-tripeptide synthetase [Thermaerobacter
          marianensis DSM 12885]
          Length = 592

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)

Query: 10 LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVV 69
          LLQ +     G      V  I   S  +   + F AI G  ++G  F   AV++GA ++V
Sbjct: 8  LLQGLTFRVAGAPAPPQVAEIRTHSSRVQRGDLFVAIPGRRHNGVAFAGEAVRRGARVIV 67

Query: 70 VNTDMVASIGSLSIPVFGVDD 90
                  +    +    V D
Sbjct: 68 AEQPPPGPLPPG-VTWIQVPD 87


>gi|163787488|ref|ZP_02181935.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
 gi|159877376|gb|EDP71433.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Flavobacteriales bacterium ALC-1]
          Length = 443

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 125/413 (30%), Gaps = 46/413 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA--ARLRS-KATIIAITGSVGKTTTKEM 125
           ++N D++     +   V  V ++  A  K+        +   AT++AITGS GKTTT  +
Sbjct: 60  ILNADIIMKSPGIPDKVDLVKEIHKAGIKVVSEIEFASKFTNATLVAITGSNGKTTTATL 119

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L               +IG       +  D    + E+    L          +P 
Sbjct: 120 THHLLKQELSV-----GLAGNIGDSFAKQVLDEDYKNYVLEISSFQLD----DIIDFKPK 170

Query: 186 IAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           IAV+T I P HL  +    E   ++K  + E   +      + DD   E     +     
Sbjct: 171 IAVLTNITPDHLDRYDYKFENYIASKFRVVENQTEDDYFIYDSDDQVIEEWLQNNSIQSK 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K  +S  K       +            ++ +            G H  +N +    +  
Sbjct: 231 KLPFSLTKVVEQGAYIDNNNIIITIDNNQIIMP----TENITLEGKHNVKNAMAASTVAH 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L     T  ++L  F   E R       L       I++S   N  +   A+  +   +
Sbjct: 287 LLKIRKQTIRESLENFQGVEHRL---EHVLKINKVQYINDSKATNVNATYFALDSMDAPT 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G            G    + + +L   ++   +  +   G     L +A    + V
Sbjct: 344 VWIVG------------GVDKGNDYKELFPFVNE-KVKAIICLGVDNAKLFEAFGNMVDV 390

Query: 425 HYSET-MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                 M             GD V++    +S             F   +  L
Sbjct: 391 IIETEYMSEAVKIAYKVANTGDNVLLSPACASFDLFENYEDRGRQFKNAVRNL 443


>gi|42524582|ref|NP_969962.1| hypothetical protein Bd3200 [Bdellovibrio bacteriovorus HD100]
 gi|62900538|sp|Q6MIF8|MURD_BDEBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39576791|emb|CAE80955.1| murD [Bdellovibrio bacteriovorus HD100]
          Length = 462

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 101/344 (29%), Gaps = 20/344 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            K  II +TG+ GKTT  ++    L+         G+    +   +   R+       I 
Sbjct: 111 IKEPIIGLTGTNGKTTVAKITEAILTESGVKTWVGGANEKPL---VDYLRLDDKAQVVIA 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L           P   V T +A  HL  +  +EE  +AK  IF+   +  T  L
Sbjct: 168 EVSSFMLEHCD----TFNPGNIVFTNLAENHLDRYRSMEEYVNAKRRIFKNTNQATTSIL 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD+    L         +  Y   K       +      +    + V+   +      
Sbjct: 224 NADDNAVVELARDPAVQRGRIFYFSRKPALEPQIMNIGGAVNIGDEIRVRTGPEIESFNI 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G+      ++   +  +        T      V +   G   R       G     ++S
Sbjct: 284 KGMKMRGKHSVENIMAAILASREHGATREAVQKVINTFTGLPHRIEYVRKVGGVMFYNDS 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  ++  A+    +           +L      G    + + +         +  + 
Sbjct: 344 KATNVHAVLRALDTFDE---------NVILIA----GGKDTNLNYEPLRTSVKRKVKTLI 390

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     +   L          T +   L        GDVV++
Sbjct: 391 LVGEAKERINRDLGDFSETFLIGTFEEAVLIAYQKSRIGDVVLL 434


>gi|258423773|ref|ZP_05686659.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
 gi|257846005|gb|EEV70033.1| UDP-N-acetylMuramoylalanine-D-glutamate ligase [Staphylococcus
           aureus A9635]
          Length = 449

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 128/395 (32%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVQPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +   V  +  ++     +Q  +   DV
Sbjct: 358 EFDELIPYM--ENVRAMVVFGQTKTKFAKLGNSQGKSVIEANNVEDAVDKVQDIIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYSTFEERG---EKFIERFRAHLP 447


>gi|300811311|ref|ZP_07091808.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497675|gb|EFK32700.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 460

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 127/414 (30%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTQQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +  G  +  + +   +    ++L  +  A   K +
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNV--GRFQKASDYFLANFDQKDILTREEKATKAKIL 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF + +      +  M                G H  QN L+ +GI S++ 
Sbjct: 250 TFSENDPAADFYIGQDYLMHGEEKMMKIAD-------IKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFLFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|108763559|ref|YP_633745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
 gi|118595667|sp|Q1D0S8|MURD_MYXXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108467439|gb|ABF92624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Myxococcus xanthus
           DK 1622]
          Length = 455

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 117/375 (31%), Gaps = 38/375 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVD 161
           R+ S   +  ITG+ GK+TT  +     +S  K          ++G P + A M   D D
Sbjct: 106 RMLSGVPLFGITGTNGKSTTTALTGTLFASGDKRTFVG----GNLGRPFSEAAMSPGDWD 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +RP  A I  + P H+  +        AKA IF+  +   
Sbjct: 162 ALVVELSSYQL----EGIRTLRPRGAAILNLTPDHIDRYPSHAAYGEAKARIFQNQQAGD 217

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N DD+    L   + A       + GK       L          +    L     
Sbjct: 218 FVVVNADDADVLGLARAAKAPVYGFSLT-GKPVADAPALAGLAVVEPGGFRLAFLGEHYT 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H AQN +    +  +           L  +     R +  R          
Sbjct: 277 LTNRALRGAHNAQNAMAAALLARLGGVASGAVQAGLDGYPGLPHRLESVRVLDGVE---W 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S+  A+   SQ           + G     G+   + +  + E      +
Sbjct: 334 VNDSKATNVDSVLVALRAFSQ-------GVWLIAG-----GKGKGAPYAPMVE-AGQGKV 380

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V   G     L  A   +  VH   T+       +     GD V++    +S      
Sbjct: 381 KGVLTIGDDADTLARAYAGAAQVHACGTLAHAVARARELAERGDTVLLSPACASFDQFKN 440

Query: 453 ---NSCGFYRLINLL 464
                  F RL+  L
Sbjct: 441 FEDRGDSFKRLVEAL 455


>gi|312622927|ref|YP_004024540.1| UDP-N-acetylmuramoylalanine/d-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203394|gb|ADQ46721.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 458

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 126/414 (30%), Gaps = 46/414 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LV+V+  +  S   L   V      +  + ++ +A R      I+AITG+ GKTTT  ++
Sbjct: 72  LVIVSPGVPLSKRPL---VLAHKKGIEVIGEIELAYRFCKSKNIVAITGTNGKTTTTTLV 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
              L    +          +IG+P         +    + E+    L  I++     +P 
Sbjct: 129 GEILKKQYEDV----VVCGNIGLPFIDTIETSSEDTIFVLEISSFQLETIKYF----KPK 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +  I  I P HL+    +E    AK  IFE +++ G   LNYD++    L   +    I 
Sbjct: 181 VGCILNITPDHLNRHLTMENYTKAKMRIFENIDEMGYTVLNYDNNITRDLIGLAKGNVIV 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              +         Q                       +    I      N+   L  +S 
Sbjct: 241 FSKT-------KTQFENVVFVENDVIYFTFEGKTQEVMKKDEIFIPGQHNLENALAAISC 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                        V     G   R             ++S   N  + + A++       
Sbjct: 294 TLPFGIEKDTIEQVLKTFRGVEHRIEFVAEINGIKFYNDSKGTNTDAAEKALNAFENPII 353

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IH 423
              G            G          A +++   +  V+L G     +   L +    +
Sbjct: 354 LIAG------------GYDKGESFEKFASLVAK-KVKKVFLLGQTKQKIASELEKIGYKN 400

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
                T+            +GD+V++    +S             F   +N LL
Sbjct: 401 FELVSTLKEAVRKSFECAQNGDIVLLSPACASWDMFENYEQRGRMFKEYVNELL 454


>gi|301155887|emb|CBW15356.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus parainfluenzae
           T3T1]
          Length = 475

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 82/459 (17%), Positives = 160/459 (34%), Gaps = 64/459 (13%)

Query: 35  RSIAPQE-AFFAIKGPHYDGHDFILHAVQ-KGAGLVVVNTDMVASIGSLS------IPVF 86
           R        F         GH     A   +GA +VVV++ +      L       IPV 
Sbjct: 58  RLAQAGAKIFI--------GH----QAENVQGASVVVVSSAIHEDNPELIAAKQNRIPVI 105

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                  A   LA   R R     IA+ G+ GKTTT  M+++  +  K     +      
Sbjct: 106 Q-----RA-QMLAEIMRFRHG---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVK 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205
                          + I E   S    +      ++P ++V+T I P H+  +    E+
Sbjct: 157 S---AGKNAHLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYEGDFEK 208

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           + +   +    L   G   +  DD+    L  +     +    ++G S++AD+++  ++Q
Sbjct: 209 MKATYVKFLHNLPFYGLAVMCADDAVLMELVPQVGRQVL----TYGFSEHADYRIEDYEQ 264

Query: 266 C-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +  +  V   G+ + V+ +  G H A N    L +        +  ++AL+ F    
Sbjct: 265 TGFQGHYTVVCPSGERINVLLNVPGKHNALNATAALAVAKEEGIGNEAILEALADFQGAG 324

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R  +    +       + + Y  +P  +   I      +  G G +  V+         
Sbjct: 325 RRFDQLGEFIRPNGKVRLVDDYGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSR 380

Query: 385 SQSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMD 431
           ++    +  +VLS   +  +            + G    AL  ++     V        +
Sbjct: 381 TRDLFDEFVQVLSQ--VDALIMLDVYAAGEAPIVGADSKALCRSIRNLGKVDPILVSDTE 438

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
            L   +   + DGD+++ + + S    ++   L E + A
Sbjct: 439 QLGDVLDQIIQDGDLILAQGAGSV--SKISRGLAERWKA 475


>gi|291278997|ref|YP_003495832.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
 gi|290753699|dbj|BAI80076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Deferribacter
           desulfuricans SSM1]
          Length = 413

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 123/403 (30%), Gaps = 55/403 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D+V     L+I    V++    +++  +   L    T I ITGS GK+TT  + +  L+ 
Sbjct: 50  DLVVVSPGLNIEKLNVNNKSKVISEYELVFNLVKDKTFIGITGSNGKSTTTFLTSQILNK 109

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        +IG P     +  D D+ + E     +  +R    L      VI  I
Sbjct: 110 ----IGLKSVACGNIGYP-LGYAIFDDFDYFVVEFSSFQIDLMRKGEFLD---AGVIINI 161

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL  +   E    +K  +                   ELLK     +  K I S+  
Sbjct: 162 TPDHLDRYKTFENYLKSKVRLS------------------ELLKDDGFFVVGKDITSYIA 203

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           + +             +  +               +G H   N+   L IV+        
Sbjct: 204 NYDLCIDTDFNDYPKLKGDVLYFENFYINVNHFPLVGKHNLVNLSFALEIVNNFYELKGD 263

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
               +        R               +++S   N  S K A+  L        G+ I
Sbjct: 264 VTHLIEDLKGLPHRC---EIVREIDGILFVNDSKGTNVDSTKTALKGLD-------GKII 313

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +LG + + G+ S   + D+           V   G     + D +     +     +  
Sbjct: 314 LLLGGLDKDGDFS-ELNDDI-----KKKCKAVVCFGRDAKNIYDQIDFEKKI-LVNKLKE 366

Query: 433 LFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            F         GD+V++    +S             F +L++ 
Sbjct: 367 AFDTSTELAKSGDIVLLSPGCASFDEFNNFEERGEYFKKLVDE 409


>gi|163854034|ref|YP_001642077.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
 gi|163665639|gb|ABY33006.1| UDP-N-acetylmuramyl-tripeptide synthetase [Methylobacterium
           extorquens PA1]
          Length = 492

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 77/452 (17%), Positives = 132/452 (29%), Gaps = 40/452 (8%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP- 84
            V G++ DSR + P   F A+ G   DG  F        A                 +P 
Sbjct: 26  PVAGLTADSRKVVPGGVFVAVPGTAADGRLFAAA-----AAAAGAVAVAGEGTRPDDLPE 80

Query: 85  ---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D   AL   A     R   T++A+TG+ GK++  + +   LS + +  A +G
Sbjct: 81  ATAWIEVADARRALALAAAGLSGRQPETVVAVTGTSGKSSVADFVRQILSRLGRESASLG 140

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIA 187
           +             +       + E              +  S  G  +     V    A
Sbjct: 141 TVGIVTNRGAEYGSLTTPDPVTLHETLARLADEGITDLAMEASSHGIEQRRLDGVELTAA 200

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T +   HL     IE+   AK  +F  L   G   +   D  +              I
Sbjct: 201 AFTNLGRDHLDYHPTIEDYLDAKLRLFTTLLPKGRPAIVNADGAYAERVIGVADAAGHAI 260

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G+  +   +L +         + +   GK   V    +G    +N L+  G+     
Sbjct: 261 RTTGRGGDF-IRLVEAGTEGFAQSLTLTHAGKDYRVRLPLVGGFQVENALVAAGLALATP 319

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A         +      G   R            + + Y   P +++  +S    + P  
Sbjct: 320 AGQADPAGVFAALEGLTGVPGRMERIGEANGGLCLVD-YAHKPEALEHVLSA---LRPFA 375

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDALPRS 421
            GR + V G     G    +    +   ++      V ++  +             L  +
Sbjct: 376 SGRLVVVFG----CGGNRDAGKRPIMGAIAERLADRVIVTDDNPRNEEPAAIRAAILAAA 431

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                              L  GDV+VV  K 
Sbjct: 432 PGAEEIGDRAEAIRAGVRDLRAGDVLVVAGKG 463


>gi|330446844|ref|ZP_08310495.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491035|dbj|GAA04992.1| UDP-N-acetylmuramate--alanine ligase [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 487

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 75/456 (16%), Positives = 151/456 (33%), Gaps = 51/456 (11%)

Query: 10  LLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAG 66
           + + +  +G+ I        N ++   R  A   E FF     +            +GA 
Sbjct: 38  IAEVLVNEGYRISGS-DIAPNAVTN--RLTAKGAEIFFGHSAENV-----------QGAS 83

Query: 67  LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +VV +T +      L +     +  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 84  VVVASTAISKENPELMAATELRIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTAL 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            T   S        +                  +   G     ++   E       ++P 
Sbjct: 140 TTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGCSRYLIAEADESDASFLHLQPM 191

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + V+T I   H+  +    E +     +    L   G   +  DD     L  +      
Sbjct: 192 VCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRP-- 249

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             + ++G +++AD +L  + Q   +  +   +     +++  +  G H A N    + + 
Sbjct: 250 --MLTYGFAEDADVRLVNYTQTGQQGHFTVQRKGKPELDITLNIPGKHNALNATAAIAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    D D  ++AL  F     R              ++ + Y  +P+ +   I      
Sbjct: 308 TEEGVDDDAILRALVEFEGTGRRFDHLGEFDTGNGKVMLVDDYGHHPSEVDVTIKA---- 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
           +  G   +  V+         ++  + D A VL   ++     V+ +G          AL
Sbjct: 364 ARAGWEDKRLVMIFQPHRYSRTRDLYDDFANVLDQVDVLVMLDVYAAGEAPIAGADGRAL 423

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
              +     +   +    + L   + + + + D+V+
Sbjct: 424 CRTIRSRGKIDPIFVPEKEELPAVLANIIQNDDLVL 459


>gi|302344210|ref|YP_003808739.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
 gi|301640823|gb|ADK86145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfarculus
           baarsii DSM 2075]
          Length = 446

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 101/372 (27%), Gaps = 42/372 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
            +   + ITG+ GK+T   ++   L +             ++G P         D D+ +
Sbjct: 103 LRPPAVMITGTNGKSTVTSLIAAMLEAEGLR----AFAGGNLGTPLCAYVAGAQDDDWAV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+              +RP + VI  I   HL  +   E+ A +K  +     +     
Sbjct: 159 LEVSSFQTDTA----VSLRPKVGVILNITDDHLDRYDSFEQYAQSKFRLLANQAEGDVAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           L  DD           A     +Y          +L   +   E     +     S   +
Sbjct: 215 LCADDPEVA--ARLGLAPASVWLYGAANDHRPGGRLENQRLALELPGRRLIKLDASRSRL 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             G          +      +    +  AI         +  G R      +      D+
Sbjct: 273 WGGFNKLNILAAGLAAAACGVSAQAMQRAIDEF------QPLGHRLALVAERDGVAWYDD 326

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +++AA+  L++ +                +G   +     L           V
Sbjct: 327 SKGTNVGAVQAALEALARPAV-------------LLLGGRDKDGRFALLAPQLAAWARLV 373

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
              G    ++   +           +             GDVV++    +S         
Sbjct: 374 ICFGEAGASIAGQIEGLAERQVVADLPAAVTLAAQEAKPGDVVLLSPGCASFDAYAGYAM 433

Query: 453 NSCGFYRLINLL 464
               F RL+  L
Sbjct: 434 RGDHFRRLVAEL 445


>gi|68249688|ref|YP_248800.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260581812|ref|ZP_05849608.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|81335883|sp|Q4QLF7|MURC_HAEI8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68057887|gb|AAX88140.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           86-028NP]
 gi|260095005|gb|EEW78897.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae NT127]
 gi|309973394|gb|ADO96595.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           R2846]
          Length = 475

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 148/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLSL  +  + 
Sbjct: 346 YGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSL--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|291544563|emb|CBL17672.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           18P13]
          Length = 462

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 115/384 (29%), Gaps = 48/384 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                     I  +TGS GKTTT  +++  L+   +     G+    +   L L     +
Sbjct: 108 ETFFDLCPCRIYGVTGSDGKTTTTTLISEMLAKTGRRVYKGGNIGKAL---LPLIETIRE 164

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  +R       P +AVIT I+P HL     +EE    K  +      
Sbjct: 165 EDAAVVELSSFQLISMRRS-----PDVAVITNISPNHLDVHGTMEEYIGCKVNLIAHQNA 219

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN D++    L  +                    +  +      + W+     GK
Sbjct: 220 YSKTVLNLDNAQTAALAEQVRGR--------LLWFTRQQKPERGTFLDAEGWLCYAEAGK 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +  +V          + +               A   + V     G   R          
Sbjct: 272 TQRIVRAEDIRIPGLHNVENYLAAIAAVWGEVPAETIVEVAKTFGGVEHRIEFVRELDGV 331

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   +P  + A +   +Q      G            G   +     +AE ++  
Sbjct: 332 KWYNDSIATSPTRVLAGLRSFNQRLIVIAG------------GYDKKIPFEPMAETVNQR 379

Query: 400 NISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            +  + L G     ++ A+       P  + + ++ +M+      +     GD+V +   
Sbjct: 380 -VKILILMGVTAPKIEKAVTEDPSYDPAKLQIVHAASMEEAVQKAKELAQPGDIVTLSPA 438

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F  L+  L
Sbjct: 439 CASFDLYPNFEARGQHFKNLVKEL 462


>gi|325299145|ref|YP_004259062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
 gi|324318698|gb|ADY36589.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           salanitronis DSM 18170]
          Length = 444

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 112/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++                   +IG  L       + D+ + E
Sbjct: 102 NAKMICITGSNGKTTTTSLIYHIFKKAGLNV----GLAGNIGQSLAYQVAECNYDYYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  +         +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 158 LSSFQLDNMYKFHA----NIAVLMNITPDHLDRYDYKMQNYIDAKFRIIQNQTDNDAFVF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD        K    G    ++  +               ++ +    ++    +   
Sbjct: 214 WNDDPIIREELHKYGIHGQYYPFAEKREDGLAAF-----SEQDKVYFTKPIEFNMEQEEL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N +      +I         +ALS F   E R               I++S
Sbjct: 269 ALTGTHNLFNSMAAGISANIAGIRKSCIREALSDFKGVEHRL---EKVARVRGVDYINDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + + +LG     G+   + + ++A ++     S + 
Sbjct: 326 KATNVNSCWYALKSMKT-------KTVLILG-----GKDKGNDYNEIAGLVRE-KCSGLI 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G H   L        + +   ++M            +G+ V++    +S         
Sbjct: 373 FLGLHNEKLHAFFDGFGLPIADVQSMKDAVDAAYRMAKNGETVLLSPCCASFDLFKSYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGDQFKECVRNL 444


>gi|160915595|ref|ZP_02077806.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
 gi|158432715|gb|EDP11004.1| hypothetical protein EUBDOL_01605 [Eubacterium dolichum DSM 3991]
          Length = 484

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 78/473 (16%), Positives = 134/473 (28%), Gaps = 59/473 (12%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG---PHYDGHDFILHAVQ 62
           TF DLL  +    +       V GIS DSR +     F AIK          + IL A+ 
Sbjct: 14  TFTDLLAKVG---VSCKDSRIVRGISDDSREVEQDMLFVAIKATAMKK----EHILEALT 66

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA  V+      A                  +  L            IA++G+ GKT+ 
Sbjct: 67  KGAV-VLCEKQPFADANIYEAASLK----QKLILLLDTLYGRYEACQCIAVSGTNGKTSV 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNH------------IGVPLTLARMPVDVDFGIFE--LG 168
              +   L   K     IG+                 G+        +     I    + 
Sbjct: 122 ASYIAQLLYMQKARVMVIGTGFVKGETIFFETSNTTPGLIALAKYFDIARQKQITHIVME 181

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +     +R    V T I   HL            K ++   L+K+G I  N D
Sbjct: 182 VSSHAIAQERIARIRFDAVVFTNITADHLDYHITKTHYRFTKFKLANYLKKSGVIIYNAD 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
             +   L      +      S+G               S+  +     + ++  +     
Sbjct: 242 YEYMLPLV----HMQSHRCVSYGLGAAHIPIEHVVLSESDIRFSLQGYKIRAHLLGLM-- 295

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+      ++ +  +     +             R        F   ID ++ A
Sbjct: 296 ------NVYNVAAALTFMRINDVEYEQLQEDVEKLRAVKGRLEVVYQGKFQVWIDYAHTA 349

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     VLS      +GR I+++G     G         +   +++        + 
Sbjct: 350 AA-----LKEVLSFAKQVAKGRVISIVG----CGGNRDVKKRPIMAEIAVKYSDVAIYTS 400

Query: 409 FHVLA------LKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KSS 452
            +         LKD    R ++    E              + D++V+  K S
Sbjct: 401 DNPRFERVCDILKDMHAERFLNACVFEHRYYAIKHAVKIAQNSDIIVITGKGS 453


>gi|113460502|ref|YP_718566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 129PT]
 gi|112822545|gb|ABI24634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           129PT]
          Length = 436

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 116/348 (33%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   IIAITGS GK+T   +++                  +IG+P     +  D D
Sbjct: 100 FCRHANKPIIAITGSNGKSTVTTLVSEMAKEDGLKVGMG----GNIGIPALEL-LQQDYD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  +   
Sbjct: 155 IYVLELSSFQL----ETTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQ--- 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                        +      L          +          K  + + ++  + +    
Sbjct: 208 -----------RAVINAEDVLTTTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L    +V  +         AL  F     R    + A  +     
Sbjct: 257 CDEMKLVGRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRF---QLAYQKDDVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S      V +    +   +   +LG   +  + S     +LA +++  +I
Sbjct: 314 INDSKATNVGST-----VAALTGLYVANKLHLLLGGDGKSADFS-----ELATLINQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +  G     L      S+     +TM+     I+ +L  GD+V++
Sbjct: 364 -YCYCFGQDGKELAAL---SVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|300112941|ref|YP_003759516.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
 gi|299538878|gb|ADJ27195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           watsonii C-113]
          Length = 452

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 64/415 (15%), Positives = 126/415 (30%), Gaps = 48/415 (11%)

Query: 66  GLVVVNTDMVASIGSLSI--PVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTT 121
             ++   + +     +++  P   V    G   +  +       +KA +I ITGS GK+T
Sbjct: 68  AALIAEAEQLVVSPGVALSEPAIQVAQARGIPVIGDI-ELFASYAKAPVIGITGSNGKST 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
              +L +      K          ++G+P          D  I EL    L      T+ 
Sbjct: 127 VTSLLEMMARQAGKQV----LAGGNLGLPALELLEKPVPDLYILELSSFQL----ETTYT 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +    A +  I+P H+  +  ++    AKA I+ G         ++  +           
Sbjct: 179 LNTVAACVLNISPDHMDRYPDLDAYFQAKARIYRGTGTMIINTDDFRVASLAQ------- 231

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                        N +      ++   + W+    +           G H   N L  L 
Sbjct: 232 --PHRSCLRFTLGNPNNNEYGLREYGGEIWLARGHEELLSTRRLPLAGRHNLANALAALA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +           + AL VF     R                ++S   N  +  AAI  + 
Sbjct: 290 LGEAAGLPRAAMLSALQVFPGLPHRC---EWLAEVKGVRWYNDSKGTNVGATVAAIEGMP 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G+ + + G + +  + S      L +         V L G     L+  L   
Sbjct: 347 C-----QGKLVLIAGGVGKGADFSP-LREPLVQRARA-----VVLIGQDASRLEAVLAGG 395

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           + ++ + +M        +    GD V++    +S             F + +  +
Sbjct: 396 LPLYRANSMGEAVAKASALAQSGDCVLLSPACASFDMYADFEARGQAFRQAVQEI 450


>gi|254805548|ref|YP_003083769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
 gi|254669090|emb|CBA07647.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha14]
          Length = 445

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/354 (16%), Positives = 110/354 (31%), Gaps = 35/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +     R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    +                G +  +   + +   +  R+  +  + +   +  
Sbjct: 214 DGVQVLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLARETGRLKQGNEDLIAT 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           Q   ++ +H+      A  +   +G+      +     +             R      +
Sbjct: 267 QDIPLQGLHNAANVMAAVALCEAIGLSRNELLEHVKTFQG---------LPHRVEKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LAGKAKGVFLIGIDAPQIRRDLDGCDLNMTDCATLEEAVQKAYAQAEAGDIVLL 418


>gi|259047014|ref|ZP_05737415.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
 gi|259036333|gb|EEW37588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Granulicatella
           adiacens ATCC 49175]
          Length = 452

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 119/345 (34%), Gaps = 32/345 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIF 165
           + T++ ITGS GKTTT  +  + L               +IGVPL+  A    + D  + 
Sbjct: 111 EGTVLGITGSNGKTTTTTLTNLMLHESFPERR--TFACGNIGVPLSQLAEDSKETDIYVT 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RP +A I  I  AHL      EE   AK +I +   +   +  
Sbjct: 169 ELSSFQLMGIE----AFRPKVACIVNIFSAHLDYHGSREEYVKAKLQITKNQTEEDFLVY 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D               +               + +    ++++ +    +        
Sbjct: 225 NADFPELYEFIKGHTKATLVPFSRKS--------VLEHGAYTDETSIYFNGEAVMPIEAI 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N+L  + I  +  A  +   KA+  FH  + R    +           ++S
Sbjct: 277 QVPGVQNVENVLAAVAICKLQGATNEGIEKAVRSFHGVKHRT---QYVKTIEGRKFYNDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A+   +        + + ++    + G   +     L       N+  + 
Sbjct: 334 KATNIIATQTALRSFT-------NQSVVLIAGGLDRGNGFEELESSLG------NVREMV 380

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G     LK    + SI V   ET++       ++  +G++V++
Sbjct: 381 VYGETKEKLKATAEKLSIPVTVVETLEEAVPKAYAASREGEIVLL 425


>gi|242242465|ref|ZP_04796910.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
 gi|242234039|gb|EES36351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis W23144]
          Length = 454

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 101 LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 156

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 157 NVAQEVKSDEYLITELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHETLENYQNAKK 212

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 213 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 268

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 269 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 319 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 366

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 367 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 424

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 425 PACASWDQYHTFEERG---EKFIDRFRAHLP 452


>gi|57866690|ref|YP_188331.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis RP62A]
 gi|62900660|sp|Q5HQ09|MURD_STAEQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|57637348|gb|AAW54136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis RP62A]
          Length = 449

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 96  LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 152 NVAQEVKSDEYLITELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHETLENYQNAKK 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 208 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 264 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 314 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 361

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 362 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 419

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 420 PACASWDQYHTFEERG---EKFIDRFRAHLP 447


>gi|330815491|ref|YP_004359196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
 gi|327367884|gb|AEA59240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 126/375 (33%), Gaps = 30/375 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRNVPGIGRIVSNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++  E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RETALERVLARGCWSEVER---FGVEGGWQALPAEDGVPVDERFAVYWRGERMGEVEWTV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  QN L  +     +      A ++ S F   + R +             + + + 
Sbjct: 279 QGEHNRQNALAAIAAARSVGVPPAQAARSFSAFRNVKRRME----IRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P +++  I+ L         R +AVL    +  ++G +       LA      +   V
Sbjct: 335 HHPTAIETTIAGLRARVGREHTRILAVLEPRSNTMKLGTMKAQLPGSLA------DADLV 388

Query: 405 WLSGFHVL------ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL P        + ++ L   + ++   GD ++V  SN  GF
Sbjct: 389 FGYGAAAGRDALGWSLADALLPLGARAQAFDDLNALVKAVTAAARPGDQILV-MSNG-GF 446

Query: 458 YRLINLLLEEFPAIQ 472
             +   LL+   A Q
Sbjct: 447 GGVHQKLLDALGARQ 461


>gi|332673458|gb|AEE70275.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 83]
          Length = 493

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 130/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR+I V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKIIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|325125488|gb|ADY84818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 460

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 127/414 (30%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTQQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +  G  +  + +   +    ++L  +  A   K +
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNV--GRFQKASDYFLANFDQKDILAREEKATKAKIL 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF + +      +  M                G H  QN L+ +GI S++ 
Sbjct: 250 TFSENDPVADFYIGQDYLMHGEEKMMKIAD-------IKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFVFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|113460505|ref|YP_718569.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
 gi|123131920|sp|Q0I1D2|MURC_HAES1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|112822548|gb|ABI24637.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 129PT]
          Length = 476

 Score = 67.6 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 137/400 (34%), Gaps = 36/400 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +VVV++ +      +         V+     LA   R R     IAI G+ GKTTT 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFRHG---IAIAGTHGKTTTT 133

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +  +        +                     + I E   S    +      ++
Sbjct: 134 AMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGC---SRYLIAEADESDASFLH-----LQ 185

Query: 184 PHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P ++V+T I P H+       EE+          L   G   +  DD     L ++    
Sbjct: 186 PMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGLSVMCADDPVLMELSSQV--- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + + ++G S  AD+++  ++Q   +  +  V   G+ ++V+ +  G H A N    L 
Sbjct: 243 -GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLNVPGKHNALNATAALT 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      + +  + AL+ F     R  +    +      ++ + Y  +P  +   I    
Sbjct: 302 VAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVNVTIQAAR 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFH 410
           Q   +       V+         ++    D  +VLS   +  +            ++G  
Sbjct: 362 QGWENK----RIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDVLIMLDVYAAGEQAIAGAD 415

Query: 411 VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +L  ++     V          L   +   + DGD+++
Sbjct: 416 SRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLIL 455


>gi|302185271|ref|ZP_07261944.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae 642]
          Length = 448

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 116/343 (33%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  D++  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDIELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMSVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLRQFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S              +     +
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG------LRAPVAKHCRAAVV 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|237807298|ref|YP_002891738.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
 gi|237499559|gb|ACQ92152.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Tolumonas auensis
           DSM 9187]
          Length = 430

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 138/416 (33%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A L+V +  +  +  +L       V  V D+              +KA ++AITGS GK+
Sbjct: 61  ASLIVASPGIALATPALQAAQMAGVEIVGDI--------ELFAREAKAPVVAITGSNGKS 112

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++ +                 +IG P     +    D  + EL    L      T 
Sbjct: 113 TVTTLVGLMAEQAGFKVGIG----GNIGTPALDLLLQP-ADLYVLELSSFQL----ETTS 163

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++P  AVI  ++  HL  + G+    +AK  IF   +               ++  +  
Sbjct: 164 SLQPAAAVILNLSEDHLDRYDGMAGYLAAKQRIFANAKH--------------IVVNRDD 209

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +   +++ +S   + +     Q  +  W+ V  +        + +G H   N L  +
Sbjct: 210 AATLPPQHAYWQSFGLNSESYGRVQQDDGLWLSVDGKPVLSVAELNIVGAHNQMNALAAM 269

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +       +  L  F     R +  R          I++S   N  S    ++ +
Sbjct: 270 ALADAVGIPQAAQLTVLRSFTGLSHRCQFVRDVNGV---RWINDSKATNVGST---LAAV 323

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           + +    +GR   + G   +  + S        + L    I  +   G     L +    
Sbjct: 324 AGVGESVQGRLWLLAGGQGKGQDFSP------LQPLLANQIYRMVCFGQDAGILMELADN 377

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +  V     +D     + + +  GD V++    +S             F  L+N L
Sbjct: 378 TQRV---ADLDEAVRSVAAEVQPGDWVLLAPACASLDQFRNFEQRGQRFADLVNAL 430


>gi|317496836|ref|ZP_07955166.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316895848|gb|EFV18000.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 454

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 119/393 (30%), Gaps = 48/393 (12%)

Query: 98  LAVAARLRSKATI----IAITGSVGK------TTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +A   R + K       +A   S G+      T  K   T     I K Y        +I
Sbjct: 85  IAQMFRDQEKPVWSEIELAYQASKGRIAAITGTNGKTTTTALTGEIMKGYYESSFVVGNI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P T   +    +  +    +S            +P +  +  I P HL     +E  A
Sbjct: 145 GIPYTSVALDTK-EDSVTTAEISSF--QLETIVDFKPDVCAVLNITPDHLDRHGTVEVYA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  I +   K   + LNY+D     +  +++   +         +    +   +    
Sbjct: 202 QTKESIGKNQTKDQVMVLNYEDDTTRAMADRANGTVLFFSLHHKIKEGVSMEGDAFIIEE 261

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + Q        + +G H  +N+L  + +   +   V    + +  F   E R 
Sbjct: 262 NG-----KKQIVCTLDDVNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRI 316

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                          ++S   NP +    I  +++ +    G            G   +S
Sbjct: 317 ---EYVDTVKGVAYYNDSKGTNPDAAIKGIKAMNRPTWLIGG------------GYDKKS 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD 445
            + +  E      +  + L G     + D         + + ++M+    +I     DG+
Sbjct: 362 TYDEWIE-AFDGKVKELILMGVTAPKIADCAKTHGFDKIKFVDSMEEAVSYIAGKAQDGE 420

Query: 446 VVVV---KSS---------NSCGFYRLINLLLE 466
            V++    +S             F   +  L E
Sbjct: 421 AVLLSPACASWGMFPNYEVRGDIFKDCVRKLKE 453


>gi|296314335|ref|ZP_06864276.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
 gi|296838885|gb|EFH22823.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           polysaccharea ATCC 43768]
          Length = 445

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 120/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALSNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNHRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+     +     +  Q   
Sbjct: 218 VLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGTLKQGDEDLIATQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|104773824|ref|YP_618804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|118595661|sp|Q1GAT6|MURD_LACDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|103422905|emb|CAI97567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 460

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 127/414 (30%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTQQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAHAVGNIGCPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +  G  +  + +   +    ++L  +  A   K +
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNV--GRFQKASDYFLANFDQKDILAREEKATKAKIL 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF + +      +  M                G H  QN L+ +GI S++ 
Sbjct: 250 TFSENDPVADFYIGQDYLMHGEEKMMKIAD-------IKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFVFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|239999606|ref|ZP_04719530.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae 35/02]
 gi|240113346|ref|ZP_04727836.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae MS11]
 gi|240116307|ref|ZP_04730369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID18]
 gi|260439876|ref|ZP_05793692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI2]
 gi|268595417|ref|ZP_06129584.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268599420|ref|ZP_06133587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268601974|ref|ZP_06136141.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291043152|ref|ZP_06568875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|268548806|gb|EEZ44224.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 35/02]
 gi|268583551|gb|EEZ48227.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae MS11]
 gi|268586105|gb|EEZ50781.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID18]
 gi|291012758|gb|EFE04741.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae DGI2]
 gi|317164858|gb|ADV08399.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae TCDC-NG08107]
          Length = 445

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|194099349|ref|YP_002002449.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae NCCP11945]
 gi|226722939|sp|B4RQC7|MURD_NEIG2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|193934639|gb|ACF30463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae NCCP11945]
          Length = 445

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|52425724|ref|YP_088861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mannheimia
           succiniciproducens MBEL55E]
 gi|62900506|sp|Q65RY4|MURD_MANSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52307776|gb|AAU38276.1| MurD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 439

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 125/367 (34%), Gaps = 49/367 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GK+T   ++T    +   +         +IG+P     +  + D  + EL 
Sbjct: 106 PVIAITGSNGKSTVTALVTEMGKAAGLSVGMG----GNIGIPALSL-LNENHDLYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H++ ++ +EE   AK  I+              
Sbjct: 161 SFQL----ETTYSLKATAATVLNVTEDHMNRYADLEEYRQAKLNIYHH-------CQTAV 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + L  +      +   SF +    +      K  + + ++  + +           
Sbjct: 210 INGEDPLTKEDDKQSAQQQVSFAE----NNADYWLKTENGKKYLMAKDKLILACDEIKLT 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +           + AL  F     R +    A        +++S   
Sbjct: 266 GRHNHMNALAAIALAQAAGIKNSGILTALRTFPGLAHRFQLAHMANGV---RWVNDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    H EG+   +LG   +  + S     +L ++++   I   +  G
Sbjct: 323 NVGST-----VAALTGLHIEGKLHLLLGGDGKGADFS-----ELEKLINKPEI-FCYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S       TM+     ++ +L  GD+V++    +S             
Sbjct: 372 QDGAHLAKLSSQS---QLFNTMEQAIETLRPTLKPGDMVLLSPACASLDQFASFEKRGEE 428

Query: 457 FYRLINL 463
           F RL  L
Sbjct: 429 FTRLAKL 435


>gi|251782916|ref|YP_002997219.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391546|dbj|BAH82005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 456

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 112/346 (32%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S++ I+ ITGS GKTTT  M+   L++           + +IG P   + +     D  +
Sbjct: 114 SESPIVGITGSNGKTTTTTMIADVLNA----GGQSALLSGNIGYPASEVVQKASANDTLV 169

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +PHIAVIT + P HL      E+  +AK  I   +     + 
Sbjct: 170 MELSSFQLMGVD----AFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTADDYLI 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN +      L             +         Q        E   +  +         
Sbjct: 226 LNANQEISAALAK----------TTKATVIPFSTQEVVDGAYLEDGMLYFKGHPIMPAAN 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  + +  +     D  ++ LS F   + R    +        T  ++
Sbjct: 276 LGVPGSHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVKHRL---QLVGKIKDITFYND 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   DL   L    +  +
Sbjct: 333 SKSTNILA------TQKALSGFDNKKLILIAG-----GLDRGNEFDDLVPDL--RGLKQM 379

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A    ++    +  +             GD +++
Sbjct: 380 IILGESAERMKRAAEMANVPYLEAADVAAATELAFQEAQAGDTILL 425


>gi|240128807|ref|ZP_04741468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268687189|ref|ZP_06154051.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
 gi|268627473|gb|EEZ59873.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 445

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KAEIF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|59801871|ref|YP_208583.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA 1090]
 gi|293398488|ref|ZP_06642666.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
 gi|62900451|sp|Q5F6L6|MURD_NEIG1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|59718766|gb|AAW90171.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           gonorrhoeae FA 1090]
 gi|291610959|gb|EFF40056.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae F62]
          Length = 445

 Score = 67.6 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KAEIF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|325980956|ref|YP_004293358.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
 gi|325530475|gb|ADZ25196.1| UDP-N-acetylmuramate/alanine ligase [Nitrosomonas sp. AL212]
          Length = 475

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 82/417 (19%), Positives = 150/417 (35%), Gaps = 42/417 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           ++ HA ++  GA +VV +T + +         + +IPV         +  LA   RLR+ 
Sbjct: 54  YVGHASEQVTGANVVVTSTAVKSDNPEVVAAKNRNIPVV----PRALM--LAELLRLRTG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++   L++       +                    +F + E 
Sbjct: 108 ---IAIAGAHGKTTTTSLIASILAAADMDPTFVIGGKLE---AAGCHAKLGSGEFIVVEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLN 226
             S           ++P +AV+T I   H+  +            E  + L   G   + 
Sbjct: 162 DES-----DASFLYLQPVLAVVTNIDADHMETYGYDFNKLKQTFVEFLQHLPFYGMAVVC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+    +             S      A        Q    + + V    + +++  +
Sbjct: 217 IDDANIREVMPAITKSITTYGLSEDAQVRATNIQHSNHQMKFTAVIGVNGSARRLDITLN 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDES 345
             G H  QN L  + + + +       ++AL+ F   E R +++    L+      + + 
Sbjct: 277 LPGLHNIQNALAAIAVANEICVPDAAIVRALAEFKGVERRFQQFGEIRLSMQKSFTLIDD 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +PA M+A +       P        V+         ++    D   VLS  ++   +
Sbjct: 337 YGHHPAEMEATMKAARGAFPGR----RLVVAFQPHRYTRTRDVFEDFTRVLSQADVLLLT 392

Query: 403 HVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKS 451
            V+ +G   +   D+  L RSI V       Y E +D L + I   + D D+V+V  
Sbjct: 393 EVYPAGEDPIVAADSKSLARSIRVLGKVEPIYIEDIDDLSIAILDVVQDNDIVLVMG 449


>gi|86140625|ref|ZP_01059184.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
 gi|85832567|gb|EAQ51016.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leeuwenhoekiella
           blandensis MED217]
          Length = 444

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 116/384 (30%), Gaps = 49/384 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      +KAT++ ITGS GKTTT  ++   L               +IG        
Sbjct: 94  EFAARY---TKATLVGITGSNGKTTTTMLMAHLLKQA----GLKSVAAGNIGDSFAKWVA 146

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             D DF   E+    L           PHIA++T I P HL  +    E    +K  I E
Sbjct: 147 LDDQDFYALEISSFQLD----GIVDFAPHIAILTNITPDHLDRYEYKFENYIKSKFRIAE 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC--SEQSWME 273
              +   +  + DD       AK         +S  K         + +     + + M 
Sbjct: 203 NQTEKDYLIYDADDPVITDWLAKHPVRSQCIPFSISKQLEKGAYYAQEEINILIDDTTMT 262

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +  +  +++  H+      A      L I      +     + +                
Sbjct: 263 MSTKNLTIKGAHNTKNAMAAATAARLLSIRKATIRESLEGFQGVEHRL---------EQV 313

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L     + I++S   N  +   A+  +S  +    G            G    + + DL 
Sbjct: 314 LKINHVSYINDSKATNVNATFYALDSMSAPTVWIVG------------GVDKGNDYTDLF 361

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV--- 449
            +++   +  +   G     L +     +     ++++             GD V++   
Sbjct: 362 PLVNE-KVKGIICLGVDNAKLLNTFSGMVETIIETQSITEAVKIAYKLSDKGDNVLLSPA 420

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F   +  L
Sbjct: 421 CASFDLFENYEDRGRQFKEAVRNL 444


>gi|170718784|ref|YP_001783967.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus somnus 2336]
 gi|189028994|sp|B0US68|MURC_HAES2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|168826913|gb|ACA32284.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus somnus 2336]
          Length = 476

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 137/400 (34%), Gaps = 36/400 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +VVV++ +      +         V+     LA   R R     IAI G+ GKTTT 
Sbjct: 77  GASVVVVSSAIKGDNIEVITAHEKRIPVIQRAQMLAEIMRFRHG---IAIAGTHGKTTTT 133

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ +  +        +                     + I E   S    +      ++
Sbjct: 134 AMVAMIYAQAGLDPTFVNGGLVKSAGTNAYLGC---SRYLIAEADESDASFLH-----LQ 185

Query: 184 PHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P ++V+T I P H+       EE+          L   G   +  DD     L ++    
Sbjct: 186 PMVSVVTNIEPEHMETYHGDFEEMKQTYVNFLRNLPFYGLSVMCADDPVLMELSSQV--- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + + ++G S  AD+++  ++Q   +  +  V   G+ ++V+ +  G H A N    L 
Sbjct: 243 -GRQVVTYGFSDEADYRIEDYQQTGFQGHYTVVAPNGERIDVLLNVPGKHNALNATAALT 301

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +      + +  + AL+ F     R  +    +      ++ + Y  +P  +   I    
Sbjct: 302 VAKEEGIENEAILTALAEFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVNVTIQAAR 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFH 410
           Q   +       V+         ++    D  +VLS   +  +            ++G  
Sbjct: 362 QGWENK----RIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDVLIMLDVYAAGEQAIAGAD 415

Query: 411 VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +L  ++     V          L   +   + DGD+++
Sbjct: 416 SRSLCRSIRNLGKVDPILVSDHKQLAEIVDQVIQDGDLIL 455


>gi|325694125|gb|EGD36043.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK150]
          Length = 459

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 125/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IA IT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAAITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      +   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQAAVVPFSTT----------EKVDGAYLDGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNIENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEVVFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD++++
Sbjct: 385 VILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIILL 430


>gi|260752700|ref|YP_003225593.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|258552063|gb|ACV75009.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 441

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 121/421 (28%), Gaps = 73/421 (17%)

Query: 64  GAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G    VV+         + A      IP+ G  D+           R      ++ ITG+
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRCCPVVGITGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   L               +IG+PL  A    D    + EL    +    
Sbjct: 131 NGKSTTTALIHHILKEA----GLPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID--- 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++ 
Sbjct: 184 -LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVIA 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +S A  +                                   S E   +        N 
Sbjct: 243 KQSAAHLVAV----------------------------HADNISAEDQVNWPNLQGPHNA 274

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
             T+  +++      +            G   R +    +     ID+S   N  +   A
Sbjct: 275 QNTVLAMAVAHILGISDDVISKALISYAGLPHRMQKIGERRGVLFIDDSKATNAMATAPA 334

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++    I          +LG + +  +L               +I   +  G        
Sbjct: 335 LAAFPAI--------HWILGGVPKTADLDPC-------KAFYNHIRQAYTIGQAGPDYAQ 379

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            L    ++V    T++             +VV++    +S             F +++  
Sbjct: 380 LLREAGVNVVECGTLEKAVRLAAEEAQPDEVVMLTPACASFDQFSDYEARGQAFRKIVEA 439

Query: 464 L 464
           L
Sbjct: 440 L 440


>gi|325136987|gb|EGC59584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M0579]
 gi|325202769|gb|ADY98223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240149]
 gi|325208765|gb|ADZ04217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis NZ-05/33]
          Length = 445

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 121/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDAFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNATNVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +     D+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|197334581|ref|YP_002156996.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
 gi|226706333|sp|B5FB34|MURC_VIBFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197316071|gb|ACH65518.1| UDP-N-acetylmuramate--alanine ligase [Vibrio fischeri MJ11]
          Length = 487

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 80/438 (18%), Positives = 152/438 (34%), Gaps = 64/438 (14%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHA--VQKGAGLVVVNTDMVASIGSL------SIPV 85
           R      E FF        GH     A  V+K A +VVV+T +  S   +       IPV
Sbjct: 62  RLAQKGAEIFF--------GH----QASNVEK-ASVVVVSTAIDPSNPEIVAAKENRIPV 108

Query: 86  FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                   A   LA   R R     IA+ G+ GKTTT  + T   S        +     
Sbjct: 109 I-----RRA-EMLAELMRYRHG---IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNGGLV 159

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIE 204
                        +   G     ++   E       ++P ++++T I   H+  +    E
Sbjct: 160 K--------NAGTNARLGSSRFLIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFE 211

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
            +     +    L   G   +  DD     L  +      + + ++G S +AD +L  ++
Sbjct: 212 TLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQV----SRQVITYGFSDDADVRLINYR 267

Query: 265 QCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           Q  +QS+  VQ + ++  ++V +  G H A N    + + +    + +  + AL  F   
Sbjct: 268 QVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDEAILTALLNFEGA 327

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R  +           ++ + Y  +P  +   I                V+        
Sbjct: 328 GRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEK----RLVMIFQPHRYS 383

Query: 384 LSQSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETM 430
            ++  + D A VL   N+  +            ++G    AL   +     +   +  T+
Sbjct: 384 RTRDLYDDFANVLD--NVDVLIMLDVYSAGETPIAGADGRALCRTIRGRGKIDPVFVPTI 441

Query: 431 DGLFLFIQSSLVDGDVVV 448
           + L   + + + +GD+++
Sbjct: 442 EALPPVLANIIQEGDLIL 459


>gi|317129301|ref|YP_004095583.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474249|gb|ADU30852.1| hypothetical protein Bcell_2595 [Bacillus cellulosilyticus DSM
           2522]
          Length = 316

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 3/188 (1%)

Query: 9   DLLQAIQGHSIGIVPQGFV-NGISIDSRSIAPQEAFFAIKGPH-YDGH-DFILHAVQKGA 65
            LL+ I  H  G +P  FV  GI+ +   +     +  +   +  +G  D ++ A + GA
Sbjct: 9   HLLKTISSHIHGEIPLSFVAKGIATNINDVKEGFIYLPLDLENENNGITDHLMKAKEHGA 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
               +  D++ S  S ++P+F V+D    + +LA         T++AI G     T   +
Sbjct: 69  VASFIKKDLITSSLSHNLPLFEVEDYTSTIEQLAKEYVDEIDPTVVAIVGKNSSFTKDLL 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
             I  ++     +   S    + V L+  +M    +  I E  ++ +  I  L+HL  P+
Sbjct: 129 AHILKTNYAVHKSDHLSKYEDLHVCLSALKMERHANVFISEYDLNSIHHITKLSHLFPPN 188

Query: 186 IAVITTIA 193
             +IT I 
Sbjct: 189 YGIITEIG 196


>gi|183602454|ref|ZP_02963820.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683232|ref|YP_002469615.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|241191192|ref|YP_002968586.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241196598|ref|YP_002970153.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218373|gb|EDT89018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620882|gb|ACL29039.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249584|gb|ACS46524.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240251152|gb|ACS48091.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289177305|gb|ADC84551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295794185|gb|ADG33720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium animalis subsp. lactis V9]
          Length = 516

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 53/467 (11%), Positives = 126/467 (26%), Gaps = 47/467 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
              +     I+ D+R++ P       KG +++   ++  A + G    V   D  A    
Sbjct: 35  ENNEVPFTAITYDTRTVTPGSLLVC-KG-NFNP-KYLEQANKLGMAAYVATNDYSAY--- 88

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATII------------------AITGSVGKTTT 122
              P   V D   AL+ LA A     +  +                   AI  ++   TT
Sbjct: 89  TDAPGLIVSDDKKALSILAQAYYDHPERQLTLIGITGTKGKTTTAYYTHAIINALSGNTT 148

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
               ++        Y             + + R  V+       + +S         +  
Sbjct: 149 ALFSSVDNCVDGMHYVESDLTTPESLDAVRMMREAVNNGMKYLVMEVSSQAYKVNRVYDF 208

Query: 183 RPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              +A    I+P H+S       E     K +I    +       +  +         + 
Sbjct: 209 HFDVAAFLNISPDHISPIEHPSFENYLWCKRQIIRNADMLVLGERSDHEQLLLEDAELNR 268

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   +   +++    +       E +  +  + G+ +  +   +            
Sbjct: 269 VPVSTFALADSPAQSDIADVTCAPTNMEHTAFDYFVDGERLGSLTLAMEGDFNYANAAAA 328

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++       +  +AL+        G+      ++     I + Y  N AS+ A +  +
Sbjct: 329 LAIAHDIGMDVSDPRALASLADVRISGRMEEMHDSRSNTLAIVD-YAHNFASVNALLDFV 387

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALK 415
            Q           + G     G  +      + +  +   +  + L+        +  + 
Sbjct: 388 EQRYGAEHPHITLITGSA---GNKAYDRREGIVK-AAQDRVQKLILTAEDTDTEPIEQIC 443

Query: 416 DALPRSI-----HVHYSETMDGLFLFIQSSLVDGD----VVVV--KS 451
             +  ++      V                    D    ++++  K 
Sbjct: 444 SEMANNVTNEDLDVQTILDRAEAVKHAVDEARAADGGLSILLLIGKG 490


>gi|326315571|ref|YP_004233243.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372407|gb|ADX44676.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 475

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 86/441 (19%), Positives = 148/441 (33%), Gaps = 45/441 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++ GA  VV +T + A    +       IPV         +  LA   RL+ 
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQADNPEVLAARERKIPVV----PRALM--LAELMRLKR 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++T  L+        +     +            +   G  E
Sbjct: 107 G---IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLN--------SAGANAKLGQGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
             +    E       + P +AV+T I   H+  +        +    F   +   GT  L
Sbjct: 156 YIVVEADESDASFLNLLPVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+     +            +S      A        +   +      +    ++VV 
Sbjct: 216 CTDNPAIREILPDVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTLPDLDVVL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DE 344
           +  G H   N L  + +   L    +  ++AL+ F     R +RY     QG  T    E
Sbjct: 276 NLAGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELPAQGGGTFTLIE 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNI 401
            Y  +P  M A ++      P        VL         ++    D   +        +
Sbjct: 336 DYGHHPVEMTATLAAARGAFPGR----RLVLAFQPHRYSRTRDCFEDFVKVMGSADAVLL 391

Query: 402 SHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +   D   L R++ V       + + +  L   I  +   GDVV+   + 
Sbjct: 392 TEVYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARSGDVVLCMGAG 451

Query: 454 SCGF--YRLINLLLEEFPAIQ 472
           S G    +++ +L  E PA+Q
Sbjct: 452 SIGAVPAKVVEMLRAEAPAVQ 472


>gi|329734436|gb|EGG70749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU045]
          Length = 449

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 96  LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 152 KVAQEVKSDEYLITELSSFQLLGIEEY----KPHIAIITNIYSAHLDYHETLENYQNAKK 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 208 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 264 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 314 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 361

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 362 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 419

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 420 PACASWDQYHTFEERG---EKFIDRFRAHLP 447


>gi|293366852|ref|ZP_06613528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319153|gb|EFE59523.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 454

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 101 LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 156

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 157 KVAQEVKSDEYLITELSSFQLLGIEEY----KPHIAIITNIYSAHLDYHETLENYQNAKK 212

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 213 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 268

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 269 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 319 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 366

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 367 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 424

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 425 PACASWDQYHTFEERG---EKFIDRFRAHLP 452


>gi|251810613|ref|ZP_04825086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805773|gb|EES58430.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis BCM-HMP0060]
          Length = 454

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 101 LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 156

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 157 KVAQEVKSDEYLITELSSFQLLGIEEY----KPHIAIITNIYSAHLDYHETLENYQNAKK 212

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 213 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 268

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 269 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 318

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 319 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 366

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 367 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 424

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 425 PACASWDQYHTFEERG---EKFIDRFRAHLP 452


>gi|27467776|ref|NP_764413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis ATCC 12228]
 gi|282876386|ref|ZP_06285253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|30316001|sp|Q8CSX6|MURD_STAES RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27315320|gb|AAO04455.1|AE016746_245 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           epidermidis ATCC 12228]
 gi|281295411|gb|EFA87938.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis SK135]
 gi|329736177|gb|EGG72449.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU028]
          Length = 449

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 96  LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFQKSVLTGRLSGNIGY---VAS 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 152 KVAQEVKSDEYLITELSSFQLLGIEEY----KPHIAIITNIYSAHLDYHETLENYQNAKK 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 208 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 264 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 314 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 361

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 362 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 419

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 420 PACASWDQYHTFEERG---EKFIDRFRAHLP 447


>gi|228941001|ref|ZP_04103559.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228973932|ref|ZP_04134507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228980521|ref|ZP_04140831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228779341|gb|EEM27598.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis Bt407]
 gi|228785798|gb|EEM33802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228818680|gb|EEM64747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326941682|gb|AEA17578.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 450

 Score = 67.2 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 115/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              SKA  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISKAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A +    I    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSADTKGQKILFSTT---------KEIEDGACIKDNALYFKGEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITIVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   +GDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|291563986|emb|CBL42802.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SS3/4]
          Length = 448

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 54/322 (16%), Positives = 97/322 (30%), Gaps = 33/322 (10%)

Query: 146 HIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T   +    +   + E+    L           P+++ IT I P HL     +E
Sbjct: 140 NIGDPYTAHALETTDESVTVAEVSSFQL----ETIMDFHPNVSAITNITPDHLDRHKTME 195

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                K  I     +  T  LNY+D              +         +          
Sbjct: 196 CYIQVKEGITRNQTEEDTCVLNYEDPVLREFGKTLKCKVLYFSSKEKLDEGIFMDGDFIV 255

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +      + +        + IG H  +N++  + I   L   +D   +A   F   E
Sbjct: 256 YRHDG-----KNEKVLDVNELNIIGRHNHENVMTAVAIAIHLGVPMDMIREACREFKAVE 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R         +   T  ++S   NP +   AI  +        G  + + G     G  
Sbjct: 311 HRI---EYVRERFGVTYYNDSKGTNPDAAIQAIKAM-------PGPTLLIAG-----GYD 355

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
             S + +  E      + ++ L G     + +   +     + Y+E M        S   
Sbjct: 356 KHSEYDEWIENFD-GKVRYLVLIGQTRDKIAECAKKHGITDIMYAEDMQEAVQVCASYAN 414

Query: 443 DGDVVVV---KSSNSC--GFYR 459
            GD V++    +S      F  
Sbjct: 415 AGDYVLLSPACASWGMFKNFEE 436


>gi|237796978|ref|YP_002864530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
 gi|259509786|sp|C3KVT7|MURD_CLOB6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|229261229|gb|ACQ52262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Ba4 str. 657]
          Length = 458

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     +  ++ ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGAYLSNNKLTMQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFERPVILIAGGYDKKIPFKPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  +        I +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNSL 458


>gi|90580229|ref|ZP_01236036.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
 gi|90438531|gb|EAS63715.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio angustum S14]
          Length = 487

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 76/459 (16%), Positives = 153/459 (33%), Gaps = 57/459 (12%)

Query: 10  LLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQ-KGA 65
           + + +  +G+ I        N ++   R  A   E FF        GH     A   +GA
Sbjct: 38  IAEVLVNEGYRISGS-DIAPNAVTN--RLTAKGAEIFF--------GH----SAENIQGA 82

Query: 66  GLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
            +VV +T +      L +     +  V  A   LA   R R     IAI G+ GKTTT  
Sbjct: 83  SVVVASTAISKENPELMAATELRIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTA 138

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           + T   S        +                  +   G     ++   E       ++P
Sbjct: 139 LTTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGCSRYLIAEADESDASFLHLQP 190

Query: 185 HIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            + V+T I   H+  +    E +     +    L   G   +  DD     L  +     
Sbjct: 191 MVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPRVGRP- 249

Query: 244 IKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              + ++G +++AD ++  + Q   +  +  ++    ++ +  +  G H A N    + +
Sbjct: 250 ---MLTYGFAEDADVRITNYTQMGQQGHFTVLRKDKPALNITLNIPGKHNALNATAAIAV 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            +    D D  ++AL  F     R              ++ + Y  +P+ +   I     
Sbjct: 307 ATEEGVDDDAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVDDYGHHPSEVDVTIQA--- 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFHV 411
            +  G   +  V+         ++  + D A VL    +  +            ++G   
Sbjct: 364 -ARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLDQ--VDVLVMLDVYSAGEAPIAGADG 420

Query: 412 LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            AL   +     +   +    + L   + + + + D+V+
Sbjct: 421 RALCRTIRSRGKIDPIFVPEAEELPAILANIIQNDDLVL 459


>gi|319791663|ref|YP_004153303.1| UDP-N-acetylmuramyL-tripeptide synthetase [Variovorax paradoxus
           EPS]
 gi|315594126|gb|ADU35192.1| UDP-N-acetylmuramyl-tripeptide synthetase [Variovorax paradoxus
           EPS]
          Length = 517

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 77/453 (16%), Positives = 136/453 (30%), Gaps = 63/453 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M  LW    L + +QG                DSR +   + F A  G   DG   +  A
Sbjct: 9   MAALW----LKERVQGALHA------------DSRPVGAGDGFIAWPGAATDGRKHVAAA 52

Query: 61  VQKGAGLVVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           + +GA   +V  + V + G      +     +  A   +A A          ++A+TG+ 
Sbjct: 53  LAQGAAACLVEHEGVDAFGFGEDDRIASYPGLKAATGPIASAFYDNPSALLDVLAVTGTN 112

Query: 118 GKTTTKEMLTIA-----------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           GKT+T   L  +                  +       C       IGVP  L    +  
Sbjct: 113 GKTSTAWWLAESLSTLRAAGGVRAMRPDGTTERSAPSPCAVMGTLGIGVPPDLTYTGLTT 172

Query: 161 DFGI----------------FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI- 203
              +                  +  S +G         +  +AV T     HL     + 
Sbjct: 173 PDPVMMQGELRALVERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMD 232

Query: 204 ---EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E  A                 ++       L+ A   AL + T+ + GK      + 
Sbjct: 233 AYWEAKAELFRWPGLRAAVINIDDMHGASLCANLVDAGIGALDVWTVSAGGKPARLVARD 292

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
             +     Q  +  Q       +    IG +   N+L  LG +  L   +  A+ A +  
Sbjct: 293 IGYDAQGLQFSVTEQGSVSVERLSTGLIGQYNVANLLGVLGTLRALGLSLSRAVAACANL 352

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
               GR +R     N     +    Y   P ++  A++ L  ++    G    + G    
Sbjct: 353 TSVPGRMERVSVGGNAPLAVVD---YAHTPDALDKALAGLRPLAQQRGGALWCLFG---- 405

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            G         +   ++     HV ++  +  +
Sbjct: 406 CGGDRDPIKRPMMAAVAERQADHVIVTSDNPRS 438


>gi|313500439|gb|ADR61805.1| MurD [Pseudomonas putida BIRD-1]
          Length = 446

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA IIAI+GS  K+T   ++    +   K      + 
Sbjct: 83  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRV----AV 138

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  D++  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 139 GGNLGTPALDL-LADDIELYVLELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 193

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +      +          ++   +  +  ++FG +   DF+    
Sbjct: 194 PAYHLAKHRIFRGARQVVVNRQDA--------LSRPLPVEGRPCWTFGLNPP-DFKAFGL 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   + ++  + Q           G H   N L  L +        +  ++AL  F   
Sbjct: 245 REVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGL 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +      D+S   N  +    ++ +  +    EG+ + + G   + G 
Sbjct: 305 AHRC---QWVRERNGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GA 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +           V L G     L +AL  ++ +   +T+D            
Sbjct: 358 EFTALREPVKRFCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQA 412

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 413 GDAVLLSPACASLDMFKNFEE 433


>gi|291276690|ref|YP_003516462.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
 gi|290963884|emb|CBG39720.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter mustelae 12198]
          Length = 490

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 122/344 (35%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIF 165
              IIAIT S GKT+ K  L   L +  + YA   S N   G V      +P   +  I 
Sbjct: 164 DLKIIAITASYGKTSIKNFLYQILRTQYQVYATPRSVNTIKGIVSDINENLPPHTEIYIV 223

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  + HL+     +I  +   HL  F  +E I   K E+ E       +  
Sbjct: 224 EAGARQKGDIAEIAHLLNHQYGIIGEVGEQHLEYFKKLENIMQTKFELLESNRLEFALIF 283

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +     L K K             K +    +LR  +   E++  E++++        
Sbjct: 284 KDNTFPQYLSKNK-------------KIQYFPTELRNEQANLEETSFELEIEQNFYTFKT 330

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G     N+   + +   L   + T  + L    P   R  +          +  + +
Sbjct: 331 NILGAFNIHNLSAAILLGHHLKIPIPTMQRVLGTLQPIPHRLTKEVVNGKMILDSSFNGN 390

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            N    S++        I+   +GR++ +   + E  E S   +I LA+ +         
Sbjct: 391 LNGMLESVR--------IAGLYDGRKVIITPGIIESDEKS---NITLAKAIDST-FDMAI 438

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G     +     R       +    L  F+ +S   GD+++ 
Sbjct: 439 ITGELNSHILSQHIRRPQKIVLKDKSQLQNFLLNSTYKGDLILF 482


>gi|289704960|ref|ZP_06501375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
 gi|289558296|gb|EFD51572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Micrococcus luteus SK58]
          Length = 599

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 87/223 (39%), Gaps = 21/223 (9%)

Query: 7   FHDLLQA-IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              L +A I  H  G  P   V G+S+DSR + P + + A+ G H  G  F   A++ GA
Sbjct: 48  AQALAEAGIAAHVHGAAPADGVTGVSLDSRVVRPGDLYVAVPGAHAHGAAFAATALEAGA 107

Query: 66  GLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAAR---LRSKATIIAITGSVGK 119
             V+ +     ++A  G    PV  VD V  A   +A         +   ++ +TG+ GK
Sbjct: 108 VGVLTDAAGRALLAGQGLADAPVLEVDAVRTAAGTVAARVYGGGRDAGPRLVGVTGTNGK 167

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG---VP-----------LTLARMPVDVDFGIF 165
           TTT  +    L ++ +    +G+     G   VP             L  +  + +    
Sbjct: 168 TTTSFLAAALLEALGRRSGIVGTILIRAGEREVPSTLTTPEATQLHALMALMREEEVDTA 227

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
            + +S           +R  +A  T +   HL     ++E  +
Sbjct: 228 VMEVSSHAVAYQRIAGLRYAVAGFTNLTQDHLDMHGSMQEYFA 270


>gi|21672497|ref|NP_660564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
 gi|25090714|sp|Q8K9T2|MURD_BUCAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21623116|gb|AAM67775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola str. Sg (Schizaphis graminum)]
          Length = 440

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 119/348 (34%), Gaps = 35/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +K  II+ITG+ GK+T   M+                   +IG P+    +     
Sbjct: 100 FSRETKCPIISITGTNGKSTVATMVKKIAEKSGYKV----LLGGNIGFPVLEM-LNKKAS 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++  IAV+  I   HL  +    E             K  
Sbjct: 155 LYVLELSSFQL----ETTFNLKSKIAVVLNITEDHLDRYPEGFEQYKKTKLSIYNKAKIC 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I         +  + K      K   SFG   N D+ +   K   E++ +  + +    
Sbjct: 211 LI-------KLKKGEKKPFNTKSKKYISFGTCNNNDYYINYEK---EKAILFHKNKKIVD 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G+H  +N+L +L I   +  D   +I  L  F     R    +        + 
Sbjct: 261 TSNILLNGHHNYENILTSLAISDQMKFDQKVSINVLKKFLGLPHRF---QTVHINNNISW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S KAA+  L       +G    +LG     G+   S    L +      I
Sbjct: 318 INDSKSTNVDSTKAALKNL-----KIKGTIWLLLG-----GDGKSSNFNILKKYFEKIKI 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G   L L     +     Y++T+    + I   +  GDVV++
Sbjct: 368 -KIYCFGKDGLNLSKLCKK--KSIYTKTLKQAIILISKKIQPGDVVLL 412


>gi|317010960|gb|ADU84707.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SouthAfrica7]
          Length = 493

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 134/345 (38%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTTFNVHASPKSVNTLLGIASDINQNLEDSSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKDITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N      E +K  +        YS          ++  +   + +  E+ L G       
Sbjct: 282 NAFCYSVEKIKPYAPNNAPLIDYSSL--------VKNIQSTLKGTSFEMLLDGVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+ + + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIALAILIAKHLGLETERIKRLVLDLNPIAHRL----QLLEVNQKVIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LAE ++        
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNEI---LAEKINEV-FDVAI 441

Query: 406 LSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G  +   +   L +   +   +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASHLKKPQKI-LLKDKGQLENILQATTIQGDLILF 485


>gi|330999324|ref|ZP_08323041.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
 gi|329575182|gb|EGG56733.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Parasutterella excrementihominis YIT 11859]
          Length = 440

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 100/370 (27%), Gaps = 31/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++            +      +    + ++ + E   
Sbjct: 93  VLAVAGTHGKTTTTSMLA---WILEDCGLNPSFLIGGVPQNFGHSARLTESEYFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP   ++  +   H   F  +E I      +   +   G +  N 
Sbjct: 150 YDTAFFDKRSKFVHYRPRTVILNNLEYDHADIFPNLEAIERQFHHLVRTIPSHGKVIFNE 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  +         ++  +         +    +  +    +         E     
Sbjct: 210 ASEALHRVLKMGLWTPAESFGTSPVCDWRLVEHEGARLFAGGKEVGRFELSLPGEHNLLN 269

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               +A  +   +   +    D  +  + +      +G     +   +        E   
Sbjct: 270 ASAAVAAAVNAGVS--AERAVDALSRFEGVKRRMEVKGEVAGTKVIDDFAHHPTAIEETI 327

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               S      +L+ + P     +   LG M      S            L     V+  
Sbjct: 328 KAVRSKYQTGRLLAVLEPRSNTMK---LGTMKAQLPGS------------LVQADKVFCY 372

Query: 408 -GFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRL 460
            G  V         P        + ++ L   + S    GD ++V  SN  GF     +L
Sbjct: 373 QGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILV-MSNG-GFGGVHKKL 430

Query: 461 INLLLEEFPA 470
           ++ L  +F A
Sbjct: 431 LDGLKSKFGA 440


>gi|228909738|ref|ZP_04073561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
 gi|228850027|gb|EEM94858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 200]
          Length = 450

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 115/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              SKA  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISKAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A +    I    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMELSADTKGQKILFSTT---------KEIEDGACIKDNALYFKGEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   +GDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEGDVVLL 422


>gi|226313426|ref|YP_002773320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
 gi|226096374|dbj|BAH44816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevibacillus
           brevis NBRC 100599]
          Length = 454

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 129/400 (32%), Gaps = 48/400 (12%)

Query: 58  LHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
              + +G  LVV           V    +L IPV  V +V  A +++A       KA II
Sbjct: 63  DDLIHEGVSLVVKNPGIPYEAAPVKQAQALGIPV--VTEVELA-SQIA-------KAPII 112

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITGS GKTTT  ++ +            G+      V   LA      ++ + EL    
Sbjct: 113 GITGSNGKTTTTTLVGLIFKEAGLDAKVGGNIGT---VLCGLAEEAGPDEWLVAELSSFQ 169

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L   R      RPHI V+  + PAHL     +EE  +AK ++F          L YD   
Sbjct: 170 LMGTRKF----RPHIGVLLNLYPAHLDYHHTMEEYLAAKLKMFANQTADDAAILPYDQP- 224

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              +  K   L     Y     +       K                 ++  +       
Sbjct: 225 --EIVEKCKDLPASIYYFSKSQEVPKGAFVKDGLILFADGNGNTEPIVAIADITVPHLD- 281

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +  +  AD  + I+ L+ F   E R        +       ++S   NP 
Sbjct: 282 ---NALAAILVAKLAGADKQSIIQVLTTFPGVEHRM---EFVDSIRGVKYFNDSKATNPE 335

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +   A+    +      G            G        +L  V+    +  V   G   
Sbjct: 336 AASRALQACKEPVVWICG------------GLDRGVDFRELLPVIQGR-VKAVIALGQTA 382

Query: 412 LALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L +    +      + +T++   L        GDVV++
Sbjct: 383 PILLERAQEAGINERIHVDTVEKAVLAASQLAESGDVVLL 422


>gi|15676332|ref|NP_273468.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis MC58]
 gi|30316129|sp|Q9K0Y4|MURD_NEIMB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|7225643|gb|AAF40858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis MC58]
 gi|316984929|gb|EFV63885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
 gi|325140935|gb|EGC63442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis CU385]
 gi|325199608|gb|ADY95063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis H44/76]
          Length = 445

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 125/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRDDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  Q   
Sbjct: 218 VLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIVTQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +      + +      
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTPLRDALVGK------ 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T+        +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|297530715|ref|YP_003671990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
 gi|297253967|gb|ADI27413.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           C56-T3]
          Length = 451

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 123/392 (31%), Gaps = 47/392 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK---------LAVAARLRSKATIIAITGSVGK 119
           +++      + +  IP      V  AL K         LA      S+   I ITGS GK
Sbjct: 68  LLDEPFDLVVKNPGIPY-TNPMVKKALEKGLPVVTEVELAYHI---SEGPFIGITGSNGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L +  +     G+      V   +AR      + + EL    L  I    
Sbjct: 124 TTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVTELSSFQLAGIDKF- 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP IAV+  I  AHL      E  A+AKA IF    +     +N DD     + +  
Sbjct: 180 ---RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVVNADDPLVMNIASSV 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +  +   +S  K       ++                     +    I      N+   
Sbjct: 237 RSQKVL--FSATKLLGEGAYVQDGAIYWNG----------DPVIRIADIVLPGQHNLENI 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V+       +      V     G   R +           ++S   N  + + A+S 
Sbjct: 285 LAAVAAAKLAGASDEAIRQVLATFSGVKHRLQYVAEIDGRRFYNDSKATNILATQKALSA 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +       G  + +L      G    +   DL   L    +  V L G     +     
Sbjct: 345 FA-------GEPVILLAG----GLDRGNEFDDLLPYLQQ--VKAVVLFGQTADKIGRIAQ 391

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++    + Y + ++            GDV+++
Sbjct: 392 KAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|261419315|ref|YP_003252997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. Y412MC61]
 gi|319766131|ref|YP_004131632.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
 gi|261375772|gb|ACX78515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC61]
 gi|317110997|gb|ADU93489.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 123/392 (31%), Gaps = 47/392 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK---------LAVAARLRSKATIIAITGSVGK 119
           +++      + +  IP      V  AL K         LA      S+   I ITGS GK
Sbjct: 68  LLDEPFDLVVKNPGIPY-TNPMVKKALEKGLPVVTEVELAYHI---SEGPFIGITGSNGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L +  +     G+      V   +AR      + + EL    L  I    
Sbjct: 124 TTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVTELSSFQLAGIDKF- 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP IAV+  I  AHL      E  A+AKA IF    +     +N DD     + +  
Sbjct: 180 ---RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVVNADDPLVMNIASSV 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +  +   +S  K       ++                     +    I      N+   
Sbjct: 237 RSQKVL--FSATKLLGEGAYVQDGAIYWNG----------DPVIRIADIVLPGQHNLENI 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  ++       +      V     G   R +           ++S   N  + + A+S 
Sbjct: 285 LAAMAAAKLAGASDEAIRQVLATFSGVKHRLQYVAEIDGRRFYNDSKATNILATQKALSA 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +       G  + +L      G    +   DL   L    +  V L G     +     
Sbjct: 345 FA-------GEPVILLAG----GLDRGNEFDDLLPYLQQ--VKAVVLFGQTADKIGRIAQ 391

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++    + Y + ++            GDV+++
Sbjct: 392 KAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|323464730|gb|ADX76883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius ED99]
          Length = 449

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 144/449 (32%), Gaps = 69/449 (15%)

Query: 51  YDGHDFILHAVQK-----------GA-GLVVVNTDMVASIGSLS---IPVFGV--DDVLG 93
            DG+D    A  K           GA  L +++   +          +P+        L 
Sbjct: 38  NDGNDLSNDAHAKDLEDLGISVVSGAHPLALLDEAPIIFKNPGIPYTVPIIQEAQKQGLK 97

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L ++ ++  + S+A II ITG+ GKTT   ++    +  ++     G+      V   +
Sbjct: 98  ILTEVELSYLI-SEAPIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGF---VASKV 153

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A+     ++ + EL    L  I       RPHIA+IT +  AHL     +E   +AK  I
Sbjct: 154 AQEVKTDEYLVTELSSFQLLGIEHY----RPHIAIITNLYSAHLDYHENLENYQNAKKRI 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           FE   ++  +  N              +     I  F      D          E+ ++ 
Sbjct: 210 FENQTESDYLIFNDKQRHL-----IDTSKIRAKILYFSTQHRVDG------IYVEKEYIV 258

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H  +N+L  +    +    +   +++LS F     R    +  
Sbjct: 259 YNGVRLIHLDDIVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRL---QYI 315

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N       ++S   N  + + A+S   Q      G            G    +   +L 
Sbjct: 316 GNNKTNKYYNDSKATNTLATQFALSSFKQPVIWLCG------------GLDRGNGFDELI 363

Query: 394 EVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
             ++  N+  +   G            +  +V  ++ +      +Q  +   DVV++   
Sbjct: 364 PYMN--NVRVMVTFGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQDVIEPNDVVLLSPA 421

Query: 450 KSS---------NSCGFYRLINLLLEEFP 469
            +S               R I       P
Sbjct: 422 CASWDQYDTFEQRG---ERFIEAFRAHLP 447


>gi|255066179|ref|ZP_05318034.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
 gi|255049724|gb|EET45188.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria sicca
           ATCC 29256]
          Length = 445

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPNIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L +                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNSDDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEAGDIVLL 418


>gi|319897394|ref|YP_004135591.1| udp-n-acetylmuramate:l-alanine ligase [Haemophilus influenzae
           F3031]
 gi|317432900|emb|CBY81266.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3031]
          Length = 475

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 147/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +  KGA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIKGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILISDTSQLGDVLDQIIQDGDLIL 455


>gi|218282555|ref|ZP_03488805.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
 gi|218216542|gb|EEC90080.1| hypothetical protein EUBIFOR_01387 [Eubacterium biforme DSM 3989]
          Length = 440

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 58/386 (15%), Positives = 108/386 (27%), Gaps = 43/386 (11%)

Query: 71  NTDMVASIGSLSIPV------FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
                  + +  IP       + V+       ++ VA R        A+TG+ GKTT   
Sbjct: 59  EKKYAFIVKNPGIPYRVPFVHYFVEQNAKIYTEIEVAYRYAKNFDYAAVTGTDGKTTVTT 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L+  K           +IG PL    +          L +S+           RP
Sbjct: 119 LLFEMLNRQK-----KSLVAGNIGTPLCELALEYTDTNYNVALELSNF--QLLGIETFRP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H++ +T +AP HL     +E    +K  I+E          N DD               
Sbjct: 172 HVSTVTNLAPDHLDYMDSLEAYFESKMRIYENTNADDYFIRNVDDENVVKYAQNIPC--- 228

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                     +   + +      +  +   +            +G     N +M   +  
Sbjct: 229 -------HVIDFSLKRKDVDLYKDDQYAYYKDTQLFKLSDLKIVGEFNCGNAMMASCMAY 281

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           ++   +    + +  F   E R                ++S   N  +        + +S
Sbjct: 282 LMGVSLFNIQEVIREFSGVEHRI---EYVDTIDNVRFYNDSKATNTHA------ACAGLS 332

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +   +   G    +       +  +        +      G      KD     + V
Sbjct: 333 AFEKNVILLCGGKDKHISFDDLKQYDAV--------VKKCISFGQTKDKFKDIFSNQVSV 384

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVK 450
              ETM   F         GD+V++ 
Sbjct: 385 ---ETMRDAFEKAVLFAKPGDIVLLC 407


>gi|224541556|ref|ZP_03682095.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525523|gb|EEF94628.1| hypothetical protein CATMIT_00726 [Catenibacterium mitsuokai DSM
           15897]
          Length = 446

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 123/383 (32%), Gaps = 44/383 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-YACIGSYNNHIGVPLTL 153
             ++ +  ++  K   IA+TG+ GKTTT  ++   L +  +  + C      +  V L  
Sbjct: 95  YTEIELGYKVAKKQHYIAVTGTNGKTTTVTLIYEILKAAGRKAHICGNYGIPYCEVVLNE 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                +    + E+    L +I       +P +A +  + P HL     ++E  ++K  I
Sbjct: 155 HLYEEEGHDIVVEMSNFQLIDIEEF----KPEVATVLNLTPDHLDYMDSLDEYYASKMRI 210

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           +   ++      N DD   +   AK        I +F      D +L+      +   + 
Sbjct: 211 YMNQDEKDLFINNSDDETLQSYLAKYPVPS--RIETFSVKGQGDVELKDNAIYYKGQKVI 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                         +G H   NM++ +   + +   +D+    L+ F   E R       
Sbjct: 269 D-------RDEIKIVGLHNVANMMVAIAACASVGVSLDSIHDTLAAFKGVEHRI---EFV 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   N  +   AI    +               +  MG   ++  +   
Sbjct: 319 RELDGVRYYNDSKGTNTDAAVIAIKAFEK-------------PVILLMGGHEKNLDLKDV 365

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS- 452
              +   I  +   G         +    H    + M    L  +    +GDVV++  S 
Sbjct: 366 REQNPL-IKTLICFGETKERFSKDMA-HPHTIVVDHMKDAILKAKEIAKEGDVVLLSPST 423

Query: 453 -----------NSCGFYRLINLL 464
                          F  ++N L
Sbjct: 424 SSFDEFHSYVERGNVFKDIVNKL 446


>gi|330964055|gb|EGH64315.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 448

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 119/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K  A  G+       P  L  +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRVAVGGNLG-----PPALDLLSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q           
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKFLAFQFDNLMPVSELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLRERNGVD---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG-LRAPVAQYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLIRVDTLQAAAERSAELAQHGDAVLL 420


>gi|319947490|ref|ZP_08021722.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
 gi|319746430|gb|EFV98691.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           australis ATCC 700641]
          Length = 450

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 148/448 (33%), Gaps = 67/448 (14%)

Query: 51  YDGHDF-----ILHAVQKGAGLV-------VVNTDMVASIGSLSIPVFGVDDVLGALNK- 97
            DG  F         +++G  +V       +++ D    + +  IP      V  AL K 
Sbjct: 38  NDGKAFEENPAAQSLLEEGIKVVTGGHPLELLDEDFAVMVKNPGIPY-TNPMVERALEKG 96

Query: 98  -----LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                    A L S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +
Sbjct: 97  IPVLTEVELAYLISEAPIIGITGSNGKTTTTTMIGEVLTAAGQN----GLLSGNIGFPAS 152

Query: 153 LARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + EL    L  I        P IAVIT + P HL      E   +AK 
Sbjct: 153 QVAQTATAKDTLVMELSSFQLMGIEAFH----PEIAVITNLMPTHLDYHGSFEGYVAAKW 208

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            I + +     + LN++    + L  ++ A                 Q +      E   
Sbjct: 209 AIQKNMTAKDFVVLNFNQDLAKDLSQQTQA----------TVVPFSTQEKVDGAYLEDGV 258

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  + +           G H  +N L T+ +  +   D  T  + LS F   + R    +
Sbjct: 259 LYFRGEAVMRADQIGVPGSHNVENALATIAVAKLRGIDNQTIQETLSAFGGVKHRL---Q 315

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S + N  +          +S       I + G     G    +   +
Sbjct: 316 YVAEIEGVKFYNDSKSTNILA------TQKALSGFDNANVILIAG-----GLDRGNEFDE 364

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK 450
           L   +    +  + + G     +K A  ++   +  +  +             GD+V++ 
Sbjct: 365 LVPDI--TGLKKMVILGESAERVKRAANQAGVTYLDATDVADATRKAYELAEPGDIVLLS 422

Query: 451 ---SS---------NSCGFYRLINLLLE 466
              +S             F + +  L +
Sbjct: 423 PANASWDMYANFEVRGDEFLKTVEELKK 450


>gi|229846167|ref|ZP_04466279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
 gi|229811171|gb|EEP46888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae 7P49H1]
          Length = 437

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 129/368 (35%), Gaps = 49/368 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+              
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYVDLEDYRQAKLRIYHN-------AKVGV 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  + L         + I SF +    +      K  + + ++  + +          +
Sbjct: 210 LNNEDSLTFGEGENQAEQIVSFAE----NGADYWLKTENGKQYLMAKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L    +   +  ++D    AL  F   + R    + A        I++S   
Sbjct: 266 GRHNYMNILAATALAQAVGINLDAIRTALRQFKGLDHRF---QLAHQANGVRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LA++++   I   +  G
Sbjct: 323 NVGST-----VAALAGLYVEGKLHLLLGGDGKGADFS-----ELADLINQPQI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                L     +S   +  ETM+    F++ +L  GD+V++    +S             
Sbjct: 372 RDGAQLAKLSSQS---YLFETMEQAIEFLRPTLQSGDMVLLSPACASLDQFASFEKRGEE 428

Query: 457 FYRLINLL 464
           F RL   L
Sbjct: 429 FTRLAQCL 436


>gi|127514383|ref|YP_001095580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
 gi|126639678|gb|ABO25321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella loihica
           PV-4]
          Length = 443

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/419 (16%), Positives = 133/419 (31%), Gaps = 62/419 (14%)

Query: 65  AGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  +VV+     D      ++ + +  V DV      LA        A +I ITGS GK+
Sbjct: 67  ASQIVVSPGIPLDTAEVRAAVDMGIDIVGDVELFARALADR-----PACVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++    +          +   +IGVP+    +  D +  + EL    L      T 
Sbjct: 122 TVTTLVGEMAAKAGLKV----AVGGNIGVPVLDL-LDGDHELFVLELSSFQL----ETTS 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A    I+  H+  +S +E    AK  +++  +              + L  + +
Sbjct: 173 SLNCISATCLNISEDHMDRYSDLESYRQAKLRLYDQTKLAIFNR--------DDLLTRPN 224

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               +  +     +  ++ +         +      Q          +G H   N+L+ +
Sbjct: 225 EPMNQNSFGLSLPEGDEWGVNHGVLVHGTTEYVAGAQ-------VSLVGSHNQANLLVAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      D    ++    F     R             + +++S   N  +  AA+  L
Sbjct: 278 ALADSAGVDKAAMVEVAKQFKGLAHRC---ELVGKHQGVSYVNDSKATNVGATIAALQGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S      EG+ I + G   +  + S           +L  +  V   G     + +    
Sbjct: 335 SDH----EGQIILIAGGDGKGADFSTL-------RGALLGVGQVITLGKDGDRIAEQFDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           +I V   E+M             GD+V++    +S             F   +  L +E
Sbjct: 384 AIRV---ESMQEAVAQAAQLAKPGDLVLLSPACASLDMYANFMARGDDFRAQVEALAQE 439


>gi|240014781|ref|ZP_04721694.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae DGI18]
 gi|240017229|ref|ZP_04723769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA6140]
 gi|240081134|ref|ZP_04725677.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae FA19]
 gi|240121304|ref|ZP_04734266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID24-1]
 gi|240124137|ref|ZP_04737093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID332]
 gi|240126247|ref|ZP_04739133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae SK-92-679]
 gi|254494321|ref|ZP_05107492.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268597245|ref|ZP_06131412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268682762|ref|ZP_06149624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268684828|ref|ZP_06151690.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
 gi|226513361|gb|EEH62706.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268551033|gb|EEZ46052.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae FA19]
 gi|268623046|gb|EEZ55446.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID332]
 gi|268625112|gb|EEZ57512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae SK-92-679]
          Length = 445

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAKIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|261867481|ref|YP_003255403.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412813|gb|ACX82184.1| UDP-N-acetylmuramate--alanine ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 476

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 137/405 (33%), Gaps = 46/405 (11%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      +       IPV        A   LA   R R     IA+ G+ 
Sbjct: 77  GASVVVISSAIHGDNPEVMAAKEARIPVIQ-----RA-QMLAELMRFRHG---IAVAGTH 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+++  +        +                  +   G     ++   E   
Sbjct: 128 GKTTTTAMVSMIYAEAGLDPTFVNGGLVK--------SAGTNAHLGCSRYLIAEADESDA 179

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P I+++T I P H+       +E+          L   G   L  DD     L 
Sbjct: 180 SFLHLQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFLHNLPFYGLAVLCADDEVLMELV 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                L  + + ++G S+NAD+++  ++Q   +  +  +   G+ ++V+ +  G H A N
Sbjct: 240 P----LVGRQVITYGFSENADYRIEDYQQTGFQGHYTVICPNGERIDVLLNVPGRHNALN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-- 353
               L +        D  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 296 ATAALVVAKEEGIKNDAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGV 355

Query: 354 --------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                        ++    PH   R   +  D  ++     +  +          I    
Sbjct: 356 TIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYPAGEAPI---- 411

Query: 406 LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             G    AL  ++     V        + L   +   + DGD+++
Sbjct: 412 -VGADSKALCRSIRNLGKVDPILVSDTEQLGEVLDQIIQDGDLIL 455


>gi|240118594|ref|ZP_04732656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           gonorrhoeae PID1]
 gi|268604305|ref|ZP_06138472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
 gi|268588436|gb|EEZ53112.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Neisseria
           gonorrhoeae PID1]
          Length = 445

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 124/414 (29%), Gaps = 46/414 (11%)

Query: 44  FAIKGPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN-- 96
            A  G  +DG  F    +  A+  G   L +            +       +    L   
Sbjct: 43  VAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQSDIEAFKQ----NGGRVLGDI 98

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      R    +IAITGS GKTT   ++   L         I        +   L R 
Sbjct: 99  ELLADIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQRE 157

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L         +RP  A +  I+  HL  +  + + A  KAEIF G
Sbjct: 158 GKKADVWVLELSSFQLENTE----SLRPTAATVMNISEDHLDRYDDLLDYAHTKAEIFRG 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                           ++L A                + +      +        ++   
Sbjct: 214 -------------DGVQVLNADDVFCRAMKRAGREVKRFSLEHEADFWLERGTGCLKQGN 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H A N++  + +   +    +  ++ +  F     R         +
Sbjct: 261 EDLISTQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEK 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAI+ L             +LG M +  + +           
Sbjct: 318 NGVVFIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDA 364

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 365 LKDKAKGVFLIGVDAPQIRRDLDGCGLNLTDCVTLEEAVQTAYAQAEAGDIVLL 418


>gi|15602008|ref|NP_245080.1| UDP-N-acetylmuramate--L-alanine ligase [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|13431689|sp|P57818|MURC_PASMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12720360|gb|AAK02227.1| MurC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 482

 Score = 67.2 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 38/406 (9%)

Query: 60  AVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A +   GA +VVV++ + A    +         V+     LA   R R     IA+ G+ 
Sbjct: 77  AAENIDGASVVVVSSAIRADNVEVVAAQERRIPVIQRAQMLAEIMRFRHG---IAVAGTH 133

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+++  +        +                  +   G     ++   E   
Sbjct: 134 GKTTTTAMISMIYAEAGLDPTFVNGGLVK--------SAGTNAHLGCSRYLIAEADESDA 185

Query: 178 LTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P ++V+T I P H+       EE+          L   G   L  DD     L 
Sbjct: 186 SFLHLQPMVSVVTNIEPDHMETYHGSFEEMKHTYVNFLHNLPFYGLAVLCADDDVLTELT 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K      + + ++G S+ AD+++  ++Q   +  +  +   G+ ++V+ +  G H A N
Sbjct: 246 PKV----GRQVITYGFSEKADYRIEDYQQTGFQGHYTVITPSGERIDVLLNVPGRHNALN 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L +        +  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 302 ATAALVVAKEEGIGNEAILAALADFQGAGRRFDQLGQFIRPNGKVMLVDDYGHHPTEVGV 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------- 405
            I    Q       R   +          ++    D  +VLS   +  +           
Sbjct: 362 TIQAARQ--GWENKRIAMIFQPHRY--SRTRDLFDDFVQVLSQ--VDVLIMLDVYAAGET 415

Query: 406 -LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            ++G    +L  ++     V   +      L   +   L DGD+++
Sbjct: 416 PIAGADSRSLCRSIRNLGKVDPIFVSDHRQLGEILDQVLQDGDLIL 461


>gi|168183596|ref|ZP_02618260.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
 gi|182673240|gb|EDT85201.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum Bf]
          Length = 458

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNGMENE--ALGDVLKFSLVEKVYNGAYLSNNKLTMQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFERPVILIAGGYDKKIPFKPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  +        I +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISHKKCEIEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNSL 458


>gi|281417761|ref|ZP_06248781.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
 gi|281409163|gb|EFB39421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum JW20]
          Length = 466

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 119/387 (30%), Gaps = 53/387 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                 A I A+TGS GKTTT  ++   L               +IG+PL +      D 
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLG----GNIGIPLLSKIEEIKDT 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +        P++AV+T ++P HL     +EE   AK  IF      
Sbjct: 167 DKVVLELSSFQLHTMTKS-----PNVAVVTNVSPNHLDVHKSMEEYVFAKKNIFRYQSAE 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN+D+        ++    +         K A  +         ++  E+      
Sbjct: 222 DRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETETEIAKASDI 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    H +         +      I   D D   K  + F   E R              
Sbjct: 282 VIPGVHNVENF------LAATAAVIDCVDRDVIRKVATTFTGVEHRI---ELVREINGVK 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A ++          G            G   +  +  L  V++   
Sbjct: 333 FYNDSIASSPTRTIAGLNSFKDKVILIAG------------GYDKKIPYDALGPVIAE-K 379

Query: 401 ISHVWLSGFHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
           +  + L G     ++ AL            I +    +++            GDVV++  
Sbjct: 380 VKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSP 439

Query: 451 SS-----------NSCGFYRLINLLLE 466
           +S               F  ++N +  
Sbjct: 440 ASASFDMFKNFEERGNRFKEIVNSIEA 466


>gi|316940202|gb|ADU74236.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 1313]
          Length = 466

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 120/387 (31%), Gaps = 53/387 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                 A I A+TGS GKTTT  ++   L               +IG+PL +      D 
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLG----GNIGIPLLSKIEEIKDT 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +        P++AV+T ++P HL     +EE  SAK  IF      
Sbjct: 167 DKVVLELSSFQLHTMTKS-----PNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAE 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN+D+        ++    +         K A  +         ++  E+      
Sbjct: 222 DRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETETEIAKASDI 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    H +         +      I   D D   K  + F   E R              
Sbjct: 282 VIPGVHNVENF------LAATAAVIDCVDRDVIRKVATTFTGVEHRI---ELVREINGVK 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A ++          G            G   +  +  L  V++   
Sbjct: 333 FYNDSIASSPTRTIAGLNSFKDKVILIAG------------GYDKKIPYDALGPVIAE-K 379

Query: 401 ISHVWLSGFHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
           +  + L G     ++ AL            I +    +++            GDVV++  
Sbjct: 380 VKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSP 439

Query: 451 SS-----------NSCGFYRLINLLLE 466
           +S               F  ++N +  
Sbjct: 440 ASASFDMFKNFEERGNRFKEIVNSIEA 466


>gi|256003375|ref|ZP_05428366.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
 gi|255992665|gb|EEU02756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           thermocellum DSM 2360]
          Length = 434

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 120/387 (31%), Gaps = 53/387 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                 A I A+TGS GKTTT  ++   L               +IG+PL +      D 
Sbjct: 79  FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLG----GNIGIPLLSKIEEIKDT 134

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +        P++AV+T ++P HL     +EE  SAK  IF      
Sbjct: 135 DKVVLELSSFQLHTMTKS-----PNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAE 189

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN+D+        ++    +         K A  +         ++  E+      
Sbjct: 190 DRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETETEIAKASDI 249

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    H +         +      I   D D   K  + F   E R              
Sbjct: 250 VIPGVHNVENF------LAATAAVIDCVDRDVIRKVATTFTGVEHRI---ELVREINGVK 300

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A ++          G            G   +  +  L  V++   
Sbjct: 301 FYNDSIASSPTRTIAGLNSFKDKVILIAG------------GYDKKIPYDALGPVIAE-K 347

Query: 401 ISHVWLSGFHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
           +  + L G     ++ AL            I +    +++            GDVV++  
Sbjct: 348 VKCLVLIGQTAPKIEKALRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSP 407

Query: 451 SS-----------NSCGFYRLINLLLE 466
           +S               F  ++N +  
Sbjct: 408 ASASFDMFKNFEERGNRFKEIVNSIEA 434


>gi|310828116|ref|YP_003960473.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
 gi|308739850|gb|ADO37510.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium limosum
           KIST612]
          Length = 458

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 91/318 (28%), Gaps = 39/318 (12%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+    L       +  RP  + I  ++P H+  +  +E   +AKA IFE     
Sbjct: 163 DVFVAEISAFQL----ETINKFRPVASAILNLSPDHMDRYGTMENYIAAKARIFENQRGE 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     L  ++               + D ++ +     +        +   
Sbjct: 219 DFLVLNADDEQVCELGRQAQCRKYY--------FSLDKKVAQGAYAMDGGIFINDNESVI 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G     N+   L    +        +          G   R       G   
Sbjct: 271 PICRIEEMGIKGPHNVQNALAATVLAYFMGVDVVSIAETLKSFGGVEHRQEFVATIGGVD 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  +   A++ +++      G            G   +  + +  EV+    
Sbjct: 331 YINDSKGTNTNAAIVALNAMTKPVILIAG------------GYDKKEDYSEFIEVVCK-K 377

Query: 401 ISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     ++ A     +         D            GDVV++    +S   
Sbjct: 378 VKRMVLVGATAPQIEAAAESQGYYSTVRVGDYDEAVKVASECAAPGDVVLLSPACASWDM 437

Query: 453 ------NSCGFYRLINLL 464
                     F  L+  +
Sbjct: 438 FDNFEIRGQVFKDLVKRI 455


>gi|309783083|ref|ZP_07677802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918191|gb|EFP63869.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia sp. 5_7_47FAA]
          Length = 461

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 122/425 (28%), Gaps = 43/425 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I + + +G         ++ +I   ++P             L      +    ++A+ G+
Sbjct: 67  IGNVISRG-------NPLMEAILDRNLPYISGP------QWLGDNVLRQ--KWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ML   L                 GVP     +    + +F + E        
Sbjct: 112 HGKTTTTSMLAWVLQDAGYNP-----GFLVGGVPRNFGLSARLTESNFFVIEADEYDTAF 166

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  A++  +   H   F  +  I +    +   +   G + +N  +   
Sbjct: 167 FDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLVNGREDSL 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + +  +     ++   + G         +      + S+  V        V     G H 
Sbjct: 227 KRVLERGCWSEVEQFGAEG-----GSGWKIANLSDDDSFDVVFNGQPLGRVRWALQGDHN 281

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNAN 349
             N L  +     +      AI++L+ F   + R +      +      F     +    
Sbjct: 282 RMNALGAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVNDVTVYDDFAHHPTAIRTT 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              ++  +     ++          LG M +    S S    +    +      +     
Sbjct: 342 IEGLRRRVGEGRILAVLEPRSNTMKLGVMKQALPDSLSGADQIFAYGAANGRDAI----- 396

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
                    P          +  L   + ++   GD V+V  SN  GF     +L++ L 
Sbjct: 397 GWDLAGALAPLGQRAKAFSDLTALVDAVTAAARPGDHVLV-MSNG-GFGGVHQKLLDALA 454

Query: 466 EEFPA 470
           E    
Sbjct: 455 ERAET 459


>gi|54310302|ref|YP_131322.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           SS9]
 gi|59798288|sp|Q6LMF7|MURC_PHOPR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46914743|emb|CAG21520.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 487

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 148/456 (32%), Gaps = 51/456 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQK--GAG 66
           + + +      I           DS       E FF        GH     A +   GA 
Sbjct: 39  IAEVLLNEGYRISGSDLAPNAVTDS-LTQKGAEIFF--------GH-----AAENVNGAS 84

Query: 67  LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +VVV+T +      L +     +  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 85  VVVVSTAIAQDNPELVAARELRIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTAL 140

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T            +                  +   G     ++   E       ++P 
Sbjct: 141 MTQIYFEAGLDPTFVNGGLVK--------SAGTNARLGCSRYLIAEADESDASFLHLQPM 192

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I   H+  +    E +     +    L   G   +  DD     L  +      
Sbjct: 193 VSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRELLPRI----G 248

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++ ++ Q   +  +  ++     + V  +  G H A N    + + 
Sbjct: 249 RQIITYGFSDDADVRIVEYGQHAHQGHFTILRAGKPDLNVKLNIPGKHNALNATAAVAVA 308

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    D D  I+AL  F     R              ++ + Y  +P+ +   I      
Sbjct: 309 TEEGVDDDAIIRALLEFEGTGRRFDHLGEFETGNGSVMLVDDYGHHPSEVDVTIQAARAG 368

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
                     V+         ++  + D A VL   ++     V+ +G          +L
Sbjct: 369 WEKK----RLVMIFQPHRYSRTRDLYEDFAHVLEQVDVLLMLDVYSAGEVAIPGADGRSL 424

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
              +     +   +  T + L   + + L + D+++
Sbjct: 425 CRTIRGRGKIDPIFVPTHEDLPSVLANILQNDDLLL 460


>gi|322513884|ref|ZP_08066963.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
 gi|322120283|gb|EFX92230.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus ureae ATCC
           25976]
          Length = 475

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 80/457 (17%), Positives = 153/457 (33%), Gaps = 60/457 (13%)

Query: 35  RSIAPQE-AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFG 87
           R +      F         GH    + +  GA +VV ++        V +     IPV  
Sbjct: 58  RLVEAGAKVFI--------GHQ-AENII--GASVVVASSAIDDTNPEVKAAKEARIPVIQ 106

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                 A   LA   R R     IAI G+ GKTTT  M+++  +  +     +       
Sbjct: 107 -----RA-QMLAEIMRFRHG---IAIAGTHGKTTTTAMISMIYTEAQLDPTFVNGGLVKS 157

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
                         + I E   S    +      ++P ++V+T I P H+  +    E++
Sbjct: 158 ---AGKNAHLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEQM 209

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +   +        G   +  DD     +  +      + + ++G S  AD+++  ++Q 
Sbjct: 210 KATYVKFLSNSPFYGLAVMCADDETVMEIAPQV----GRQVVTYGFSDKADYRIEDYQQT 265

Query: 267 -SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +  +  V   G+ ++V+ +  G H A N    L +        +  + AL+ F     
Sbjct: 266 GFQGHYTVVCPNGERIDVLLNVPGKHNALNATAALAVAKEEGIGNEAILAALADFQGAGR 325

Query: 326 RGKRYRCALNQGFFTLIDESYNANP----------ASMKAAISVLSQISPHGEGRRIAVL 375
           R  +    +      ++ + Y  +P           S      V+    PH   R   + 
Sbjct: 326 RFDQLGSFIRPNGKVMLVDDYGHHPTEVDVTIKAARSGWEDKRVVMIFQPHRYSRTRDLF 385

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGL 433
            D  ++     +  +          I      G    AL  ++     V        D L
Sbjct: 386 DDFVQVLSQVDALIMLEVYAAGEAPI-----VGADSKALCRSIRNLGKVDPILVSDTDQL 440

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +   + DGD+++ + + S    R+   L E + A
Sbjct: 441 GEVLDQIIQDGDLILAQGAGSV--SRISRGLAESWKA 475


>gi|90413041|ref|ZP_01221039.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
 gi|90326056|gb|EAS42495.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium profundum
           3TCK]
          Length = 486

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 149/456 (32%), Gaps = 51/456 (11%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQK--GAG 66
           + + +      I           DS       E FF        GH     A +   GA 
Sbjct: 38  IAEVLVNEGYRISGSDLAPNAVTDS-LTRKGAEIFF--------GH-----AAENVNGAS 83

Query: 67  LVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           +VVV+T +      L +     +  V  A   LA   R R     IAI G+ GKTTT  +
Sbjct: 84  VVVVSTAIAQDNPELVAARELRIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTAL 139

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T            +                  +   G     ++   E       ++P 
Sbjct: 140 MTQIYFEAGLDPTFVNGGLVK--------SAGTNARLGCSRYLIAEADESDASFLHLQPM 191

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I   H+  +    E +     +    L   G   +  DD     L  +      
Sbjct: 192 VSVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCVDDPVVRELLPRI----G 247

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++ ++KQ   +  +  V+     + V  +  G H A N    + + 
Sbjct: 248 RQIITYGFSDDADVRIVEYKQYAHQGHFTIVRAGKPDLNVKLNIPGKHNALNATAAVAVA 307

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    D D  I+AL  F     R              ++ + Y  +P+ +   I      
Sbjct: 308 TEEGVDDDAIIRALLEFEGTGRRFDHLGEFDTGNGSVMLVDDYGHHPSEVDVTIQAARAG 367

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
                     V+         ++  + D A VL   ++     V+ +G          +L
Sbjct: 368 WEKK----RLVMIFQPHRYSRTRDLYEDFAHVLEQVDVLLMLDVYSAGEVAIPGADGRSL 423

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
              +     +   +  T D L   + + L + D+++
Sbjct: 424 CRTIRGRGKIDPIFVPTHDDLPSVLANILQNDDLLL 459


>gi|329118771|ref|ZP_08247469.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465118|gb|EGF11405.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 450

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 109/354 (30%), Gaps = 35/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++      R    IIAITGS GKTT   ++             +        +   + R 
Sbjct: 104 EIFAHIANRRGDKIIAITGSNGKTTVTSLVGHL-CEKCGLDTVVAGNIGTPVLEAEMQRG 162

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G
Sbjct: 163 GKKAGVWVLELSSFQLENTE----SLRPSAAAVLNISEDHLDRYDDLLDYAHTKDKIFRG 218

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +               ++L A             G    +  +   +    E   ++   
Sbjct: 219 VG-------------VQVLNADDALCRAMKRAGRGVKWFSLEKQADYWLERETGRLKAVS 265

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H A N++  + +   +    +  +K +  F     R         +
Sbjct: 266 DDLMNTTDIPLQGLHNAANVMAAVALCEAVGLPREELVKHIQTFKGLPHRV---EKIGEK 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                ID+S   N  +  AAIS L            A+LG + +  + +          +
Sbjct: 323 NGVVFIDDSKGTNVGATAAAISGLQ-------SPLFAILGGLGKGQDFTP------LAQV 369

Query: 397 SLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +  V L G     ++ D     +++    T+        +    GD+V++
Sbjct: 370 LRGKVKAVLLIGRDAPQIRRDLAGAGLNLIDCATLQEAVQTAYAQAQSGDIVLL 423


>gi|26988069|ref|NP_743494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida KT2440]
 gi|38258004|sp|Q88N78|MURD_PSEPK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24982793|gb|AAN66958.1|AE016324_8 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           KT2440]
          Length = 450

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA I+AI+GS  K+T   ++    +   K      + 
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIVAISGSNAKSTVTTLVGEMAAKAGKRV----AV 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  D++  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 143 GGNLGTPALDL-LADDIELYVLELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +      +          ++   +  +  ++FG +   DF+    
Sbjct: 198 PAYHLAKHRIFRGARQVVVNRQDA--------LSRPLPVEGRPCWTFGLNPP-DFKAFGL 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   + ++  + Q           G H   N L  L +        +  ++AL  F   
Sbjct: 249 REVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGL 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +      D+S   N  +    ++ +  +    EG+ + + G   + G 
Sbjct: 309 AHRC---QWVRERNGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GA 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +           V L G     L +AL  ++ +   +T+D            
Sbjct: 362 EFTALREPVKRFCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQA 416

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 417 GDAVLLSPACASLDMFKNFEE 437


>gi|34558797|gb|AAQ75142.1| UDP-MurNac-pentapeptide presynthetase [Alvinella pompejana epibiont
           6C6]
          Length = 475

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 115/344 (33%), Gaps = 34/344 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIF 165
              +I +T S GKT+ K  +   LS   + YA   S N   GV       +   +   + 
Sbjct: 157 DLKVIGVTASYGKTSIKNFIAHLLSKKYRVYATPRSVNTLGGVIRDINENLDEKIQIYVV 216

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+G    G+I  +T LV PH A++  I  AH+  F  +E I   K               
Sbjct: 217 EMGARERGDILEITQLVNPHYAIVGQIGTAHIEYFKSLENIRDTKM-------------- 262

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E++ +K          +  K            +  +     ++ +        
Sbjct: 263 -------EIIHSKRLIKAFVHKSANIKPNEKVEVFGDEIEDIKADLNGIEWRVGDRIYRA 315

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+ + + I  +     D   + L        R +R           +ID+S
Sbjct: 316 PILGSFNATNLTVAIKIAKLFGMSDDEVQERLKSLKQTPHRLQRIDAGGK----IIIDDS 371

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A      ++    GR++ +   + E+    +  +  +A+  +      V 
Sbjct: 372 FNGNIDGMIEAFK----LASTHSGRKVLITPALVEV---DRELNEKVAKEANRI-FDLVI 423

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++      +         +   ++   +   +  +   GD+++ 
Sbjct: 424 ITSELNYPIFKEYIDRDKLLKLDSKANMEKILAENTKSGDLILF 467


>gi|114321344|ref|YP_743027.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227738|gb|ABI57537.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 449

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 128/413 (30%), Gaps = 55/413 (13%)

Query: 58  LHAVQKGAGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
             A+  GAG ++V+         + +     +P+           ++ + AR    A + 
Sbjct: 64  DAALLAGAGEIIVSPGVSLREPALETARRAGVPLI---------GEIELFARHA-DAPVA 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMS 170
           AITGS GK+T   ++     +  +      +   ++G P   L       D  I EL   
Sbjct: 114 AITGSNGKSTVTTLVGRMAEAAGRRV----AVGGNLGTPALALLDGETRPDAYILELSSF 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L      TH + P +A +  I+  H+     +   A  KA IF G           DD 
Sbjct: 170 QL----ETTHSLAPRVAAVLNISADHMDRHGSVSAYAGIKARIFHGAGVQVLNL---DDP 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +      +   ++ S         +           W+ +  +           G 
Sbjct: 223 VVAAMAQPGRTVLGFSLAS------NPRRGAGVADHRGAPWLHLNGEPVLPAADLRLPGL 276

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  L +   L   V    +AL  F     R                ++S   N 
Sbjct: 277 HNRANALAALCLGQGLGLPVAAMAEALRRFTGLPHRT---EWVAEHAGVRWYNDSKGTNV 333

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +  AAI  L+       G  + + G     G+   +  + LA+ L         L G  
Sbjct: 334 GAAVAAIRGLA-------GPVVLIAG-----GDGKGADFLPLADALREKG-RAAVLIGRD 380

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--GFY 458
              L   L   + V  +  M        +    GD V++    +S     GF 
Sbjct: 381 APRLAQVLSGVVPVERAADMRDAVRRAANLARSGDAVLLSPACASFDMFRGFE 433


>gi|104783455|ref|YP_609953.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           entomophila L48]
 gi|95112442|emb|CAK17169.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           entomophila L48]
          Length = 448

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 127/381 (33%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA IIAI+GS  K+T   ++    +   K      + 
Sbjct: 85  ALQQAAARGVTLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAQAGKRV----AV 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +   V+  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 141 GGNLGTPALDL-LDDSVELYVLELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +      +          ++   +  +  +SFG +   DF+    
Sbjct: 196 PAYHLAKHRIFRGARQVVVNRQDA--------LSRPLPVEGRPSWSFGLNAP-DFKAFGL 246

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   +  +  + Q           G H   N L  L +        +  ++AL  F   
Sbjct: 247 REVDGEKHLAFEFQTLMPVRELKIRGAHNQSNALAALALGHAAGLPFEPMLEALREFKGL 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +      D+S   N  +    ++ +  +    EG+ + + G   + G 
Sbjct: 307 AHRC---QWVRERNGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GA 359

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +A+     +   V L G     L + L  ++     +T+D            
Sbjct: 360 DFAALREPVAQ-----HCRAVVLLGRDAERLAETLGDTVPQVRVKTLDEAVQRCAELAQP 414

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 415 GDAVLLSPACASLDMFKNFEE 435


>gi|313677377|ref|YP_004055373.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Marivirga
           tractuosa DSM 4126]
 gi|312944075|gb|ADR23265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marivirga
           tractuosa DSM 4126]
          Length = 455

 Score = 66.8 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 128/409 (31%), Gaps = 54/409 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           ++V      +IPV    D L         A   +K  IIAITG+ GK+TT  +    L  
Sbjct: 78  EIVKKALGKNIPVI---DELEF-------AFGFTKGKIIAITGTNGKSTTTMLTYHLLKE 127

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              +         +IG  +    + +D D+ + E     +          +PHIA++  I
Sbjct: 128 AGLSV----GLGGNIGKSMAGQLVDIDFDWWVLECSSFQID----GFVNFKPHIAILLNI 179

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +   +E   ++K  +F+   K     L  +D      + K         + F 
Sbjct: 180 TPDHLDRYDYKVENYVASKFSLFKNQGKEDFALLYTEDKLIHDYQVKHPFSSKLLEFKFE 239

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                                  + +    + +    G H   N + ++    +     D
Sbjct: 240 DIPYEGAYANPSGIIVN----LDKQRHTFSQDLLTIKGKHNQTNAMASILTAKLTKIKND 295

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              ++L  F   + R        N      I++S   N  ++  A+   ++      G  
Sbjct: 296 KISESLPKFKSIQHRL---ESVGNIHGIEFINDSKATNVDAVYYALDAFTRPIIWIVG-- 350

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-VHYSETM 430
                     G    + +  L       N+  +   G     +K+        +  +++M
Sbjct: 351 ----------GVDKGNDYSQL--DAVSTNVKAIICLGKDNEKIKEHFKSRCPIIEETQSM 398

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
                       D +VV++    +S             F RL   LLE 
Sbjct: 399 QDAVEMGYKLSKDREVVLLSPACASFDLFKNYEDRGNQF-RLAFQLLER 446


>gi|329730007|gb|EGG66398.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU144]
          Length = 449

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 52/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ ++  + S+A IIA+TG+ GKTT   ++         T    G+      V  
Sbjct: 96  LKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDIFQKSVLTGRLSGNIGY---VAS 151

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   +AK 
Sbjct: 152 KVAQEVKSDEYLITELSSFQLLGIEEY----KPHIAIITNIYSAHLDYHETLENYQNAKK 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +I++   K   +  NY     +    +S  L  KT Y   + +     ++          
Sbjct: 208 QIYKNQTKDDYLICNYH----QRHLIESENLEAKTFYFSTQQEVDGIYIKDGFIVFNGIR 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                G H  +N+L  +    I    V   + +L  F   + R    +
Sbjct: 264 IINTKD-------LVLPGEHNLENILAAVLASIIAGVPVKAIVDSLVTFSGIDHRL---Q 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   N  + + A++   Q      G            G    +   +
Sbjct: 314 YIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCG------------GLDRGNEFDE 361

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV- 449
           L   +   N+  + + G            +  +V  +  ++     IQ  +   DVV++ 
Sbjct: 362 LIPYM--ENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLS 419

Query: 450 --KSS---------NSCGFYRLINLLLEEFP 469
              +S               + I+      P
Sbjct: 420 PACASWDQYHTFEERG---EKFIDRFRAHLP 447


>gi|322421364|ref|YP_004200587.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
 gi|320127751|gb|ADW15311.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M18]
          Length = 453

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 117/354 (33%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       KA ++AITG+ GKTTT  +      +             +IG PL    M
Sbjct: 100 ELASWF---IKAPMVAITGTNGKTTTTTLTGEIFKA----CGYQTFVGGNIGDPLIDLAM 152

Query: 157 P-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +VD  + EL    L  I       RPH+AV+  +   HL  +   +E   AK  IFE
Sbjct: 153 SGEEVDRVVVELSSFQLEGIE----SFRPHVAVLLNLTEDHLDRYHSFQEYIDAKLRIFE 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    LN DD       +K  A            +   ++        +   +   
Sbjct: 209 NQGPADFAVLNIDDPLVAACASKLKAQLFPMSRFHELQEGISYRDGFITFARKGKVLRFG 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G  ++ VH+      +    +                 A       +G   R      
Sbjct: 269 TDGFKLKGVHNLDNIMASMASTL---------LMGCDGDCAYQAVKSFKGLPHRMEFVEE 319

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               +  ++S   N  S+  ++           G            G+     +  LA++
Sbjct: 320 VNGVSYYEDSKGTNVGSVVKSLESFDSGITLIAG------------GKDKGGSYEPLAKL 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +S   +SH+ L G     +K+AL +     +++T++      +     G VV+ 
Sbjct: 368 VSER-VSHLVLIGEARQRMKEALGQLTDTRFADTLEEAVDIARRLTEPGGVVLF 420


>gi|148549594|ref|YP_001269696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida F1]
 gi|148513652|gb|ABQ80512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           F1]
          Length = 450

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 127/381 (33%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA IIAI+GS  K+T   ++    +   K      + 
Sbjct: 87  ALQQAAARGVKLSGDIELFARHAKAPIIAISGSNAKSTVTTLVGEMAAKAGKRV----AV 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  D++  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 143 GGNLGTPALDL-LADDIELYVLELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +      +          ++   +  +  ++FG +   DF+    
Sbjct: 198 PAYHLAKHRIFRGARQVVVNRQDA--------LSRPLPVEGRPCWTFGLNSP-DFKAFGL 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   + ++  + Q           G H   N L  L +        +  + AL  F   
Sbjct: 249 REVDGEKYLAFEFQTLMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLAALREFGGL 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +      D+S   N  +    ++ +  +    EG+ + + G   + G 
Sbjct: 309 AHRC---QWVRERNGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GA 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +           V L G     L +AL  ++ +   +T+D            
Sbjct: 362 EFTALREPVKRFCRA-----VVLLGRDAERLAEALGDAVPLVRVKTLDDAVQQCAELAQA 416

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 417 GDAVLLSPACASLDMFKNFEE 437


>gi|329954172|ref|ZP_08295267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
 gi|328528149|gb|EGF55129.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           clarus YIT 12056]
          Length = 444

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 116/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGNSLALQVAMEKHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   +++   AK  I +          
Sbjct: 157 LSSFQLD----NMYKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD        K         ++  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIRRELEKHGLKAHLYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQE-----EL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALHGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVEHRL---EKVATVRGIQFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E L     S + 
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEI-EDLVRTKCSALV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 372 YLGLHNEKLHEFFDRFGLPVADVQTGMKDAVDAAFKLAQKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKYVREL 444


>gi|292490622|ref|YP_003526061.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
 gi|291579217|gb|ADE13674.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nitrosococcus
           halophilus Nc4]
          Length = 452

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 123/396 (31%), Gaps = 39/396 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
               +++   +LS P   V    G   L  + + A    +A +IAITGS GK+T   ++ 
Sbjct: 74  AERLVISPGVALSEPAIQVAQARGIPVLGDIELFAYWA-QAPVIAITGSNGKSTVTVLVE 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                  K          ++G+P          D  + EL    L      T  +    A
Sbjct: 133 AMARQAGKKV----LSGGNLGLPALELLEKPVPDLYVLELSSFQL----ETTSTLNAVAA 184

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I  I+P H+  +  +E    AK  ++ G         +   +              +  
Sbjct: 185 CILNISPDHMDRYPNLEAYVQAKGRVYHGTGAMVINADDVQVAGLAQ---------PERH 235

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                           ++ + ++W+    +          +G H   N L  L +     
Sbjct: 236 CLRFTLGAPAADEYGLRERAGETWLARGHELLLPARQFPLVGRHNLANALAALALGEAAG 295

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                 + AL  F     R                ++S   N  +  AAI  L     H 
Sbjct: 296 LPQLAMLSALREFRGLPHRC---EWVAQANGVDWYNDSKGTNVGATVAAIEGL-----HC 347

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +G+ + + G + +  + S      L+          V L G     L+ AL  S+ ++  
Sbjct: 348 QGKLVLIAGGVGKGADFSPLC-APLSRRARA-----VVLMGQDAPRLEAALANSVPLYQV 401

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSSNSC--GFY 458
             M        +    GD V++    +S     GF 
Sbjct: 402 NDMGEAVNKASALAEPGDSVLLSPACASFDMYSGFE 437


>gi|85707764|ref|ZP_01038830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
 gi|85689298|gb|EAQ29301.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erythrobacter sp.
           NAP1]
          Length = 460

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 114/403 (28%), Gaps = 55/403 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +       S+PV G  D+       A A        ++ ITG+ GK+TT  ++   L 
Sbjct: 79  HPIAGHAAQFSVPVIG--DIELF----ARARADLLPHKVVGITGTNGKSTTVALVHHILQ 132

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                    G+    I     LA         + EL    +     LT  +   +A +T 
Sbjct: 133 MAGIPSLLGGNIGEPIMAQEPLAPGEGGEGVYVLELSSYQID----LTTSLDCEVAALTN 188

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL  + G    A+AK  +F+             +     +  +      +      
Sbjct: 189 ITPDHLDRYDGFAAYAAAKERLFKMQSPRNLAVFGSLEEPVGAIYRRQIEFRGEGRAQAA 248

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                  +   W                           H  +N+ + + IV  L     
Sbjct: 249 DLDALRDRQANWPSLQG---------------------PHNLENVAVAVAIVEELGVTEA 287

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               A+  F     R         +     I++S   N  +   A++   +         
Sbjct: 288 QWSHAIPRFRGLPHRM---EIVCEEEGVLFINDSKATNTDASAPALAAYPRGEADRPRIH 344

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETM 430
             V G   E G    + H  L ++         +  G       + L   +  V   E +
Sbjct: 345 WIVGGLAKEDGLGKCAEH--LGDIAVA------YTVGEAGPRFAELLEGEVPKVERCELV 396

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
                  + + V GDVV+     +S             F +L+
Sbjct: 397 SEAVRRAKDAAVAGDVVLFSPACASFDQFRDYEKRGEHFRQLV 439


>gi|152979585|ref|YP_001345214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus succinogenes
           130Z]
 gi|189028967|sp|A6VQN2|MURC_ACTSZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150841308|gb|ABR75279.1| UDP-N-acetylmuramate--alanine ligase [Actinobacillus succinogenes
           130Z]
          Length = 476

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 140/410 (34%), Gaps = 38/410 (9%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           FI HA      A +VVV++ +      +         V+     LA   R R     IAI
Sbjct: 67  FIGHAATNVENASVVVVSSAIKPDNVEVVAAHEKRIPVIQRAQMLAELMRFRHG---IAI 123

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  M+++  +        +                     + I E   S   
Sbjct: 124 AGTHGKTTTTAMISMIYTQAGLDPTFVNGGLVKS---AGTNAYLGASRYLIAEADESDAS 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            +      ++P ++V+T I P H+       +E+          L   G   +  DD+  
Sbjct: 181 FLH-----LQPMVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGLAVMCADDAVL 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYH 291
             L  +      + + ++G S+ AD+++  ++Q   +  +  +   G+ + ++ +  G H
Sbjct: 236 MELVPQV----GRQVITYGFSEKADYRIENYEQTGFQGHYDVITPAGERIHILLNVPGKH 291

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N    L +        D  + AL+ F     R  +    +      ++ + Y  +P 
Sbjct: 292 NALNATAALVVAKEEGIGNDAILAALADFQGAGRRFDQLGEFIRPNGKVMLVDDYGHHPT 351

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----- 406
            +   I      S     R + V          ++    D   VLS   +  + L     
Sbjct: 352 EVGVTIQAAR--SGWENRRVVMVFQPHRY--SRTRDLFDDFVRVLSQ--VDVLILLDVYP 405

Query: 407 ------SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                 +G    +L  ++     V   +      L   +   + DGD+++
Sbjct: 406 AGEQPIAGADSRSLARSIRNLGKVDPIFVADHGQLPEVVDQIIQDGDLIL 455


>gi|313123440|ref|YP_004033699.1| UDP-N-acetylmuramoylalanine--d-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280003|gb|ADQ60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 460

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 122/414 (29%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTQQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +    + +     N+D      +  +        I
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNVCRFQKASDYFLANFDQKD---ILTREEKATKAKI 248

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +F ++  A                    +           G H  QN L+ +GI S++ 
Sbjct: 249 LTFSENDPAADFYIGQDYLMHG------EEKMMKIADIKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFVFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|167630129|ref|YP_001680628.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592869|gb|ABZ84617.1| udp-n-acetylmuramate--alanine ligase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 461

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 145/412 (35%), Gaps = 45/412 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +      ++ ++   D+L  L +         +   IA+ G+ GKTTT  M+ + L
Sbjct: 78  DNPELRLAKERNLTIWHRADLLAWLME---------QKKGIAVAGTHGKTTTSAMIGLML 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                  A I        V   +  +  +  +G  +   +   E       + P +AVIT
Sbjct: 129 EQCGLDPAII--------VGGEIREIEGNAKWGQGDFMAAEADESDRSFLKLSPWMAVIT 180

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL ++   E I  A  +  E L   G + L  DD   + +  +  A     + ++
Sbjct: 181 NIEADHLDHYQSFEAIVEAFYQFTERLSGDGILLLCADDPLLQEMAQRVTAR---RVVTY 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G    AD++        + S  ++    +    ++    G H   N L  +    ++   
Sbjct: 238 GMKAKADYRAVDLSCTGKGSQADIFRGEERLGRLMLSVPGEHNMSNALAAVACADLIGIP 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A  ALS F     R +R      +     + + Y  +P  +KA ++   Q  P   G
Sbjct: 298 FAAAAAALSRFGGVGRRFQRM----GEAKGVSVVDDYAHHPTEVKATLAAARQTQP---G 350

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH------VLALKDALPR 420
           R +AV          ++  + +  E     ++   S ++ +G           ++D   R
Sbjct: 351 RLVAVFQPHRY--TRTRDLYREFGEAFDAADVVVLSEIYPAGEAPIPGVSSGLIRDVYER 408

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS---CGFYRLINLLLEE 467
                  Y+   + L   +Q  +  GD+V+   +         +L+  L   
Sbjct: 409 RCGRKALYAADKEELLRRLQDLVKPGDLVLTMGA-GNIWMAGRQLLEALEAR 459


>gi|297379937|gb|ADI34824.1| Hypothetical protein HPV225_0748 [Helicobacter pylori v225d]
          Length = 493

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 130/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|327473405|gb|EGF18825.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK408]
          Length = 459

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDMLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQVAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 385 VILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|125717507|ref|YP_001034640.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           sanguinis SK36]
 gi|158513223|sp|A3CLN5|MURD_STRSV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125497424|gb|ABN44090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Streptococcus sanguinis SK36]
          Length = 450

 Score = 66.8 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDMLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 166 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 222 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQVAE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 376 VILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 421


>gi|225019925|ref|ZP_03709117.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
 gi|224947289|gb|EEG28498.1| hypothetical protein CLOSTMETH_03879 [Clostridium methylpentosum
           DSM 5476]
          Length = 463

 Score = 66.4 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 101/353 (28%), Gaps = 36/353 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   I A+TGS GKTTT  +++  L +        G+    +   L         D
Sbjct: 111 FFELCPCKIYAVTGSDGKTTTTTLISEMLKAQDYNVHLGGNIGKAL---LPGIEEIGPDD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L+    P +AVIT IAP HL     +EE    K  +        
Sbjct: 168 VAVVELSSFQL-----LSMRQSPDVAVITNIAPNHLDVHGTMEEYIQCKCHLLWHQNAFS 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN D+   + L         K          A           +     +      +
Sbjct: 223 KAVLNADNEITDGLSGYVRGRLCKFSRRAAPHTGAWADENGDIFLMDNGKQTLLFNQNQI 282

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +       +      +          +    +K    F   + R               
Sbjct: 283 RLPGTHNVENY-----LAAIAAVSGVVEPANILKVAREFGGVQHRI---EFVRELDGVKW 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   +P    A ++   Q      G            G   +  +  LA VL   + 
Sbjct: 335 YNDSIATSPTRTIAGLNAFEQKLIIIAG------------GYDKKLSYEPLAPVLVSKS- 381

Query: 402 SHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G     ++ A+       P  + +++  +M+      +     GD++
Sbjct: 382 KALILMGTTAPKIQQAVVDCSGYDPELLPIYHVASMEEAVTLARKIASAGDII 434


>gi|167040634|ref|YP_001663619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter sp. X514]
 gi|300914675|ref|ZP_07131991.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307724091|ref|YP_003903842.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
 gi|226722952|sp|B0K3H2|MURD_THEPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166854874|gb|ABY93283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           sp. X514]
 gi|300889610|gb|EFK84756.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X561]
 gi|307581152|gb|ADN54551.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           sp. X513]
          Length = 454

 Score = 66.4 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 111/362 (30%), Gaps = 35/362 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++  A R  SKA I AITG+ GKTTT  +L     +             +IG PL 
Sbjct: 94  ELLGEVEFAYR-FSKAPIYAITGTNGKTTTTSLLGEMFKN----TGRKVYVAGNIGYPLI 148

Query: 153 LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A M   + DF + E+    L          +P I+ I  I P HL      E     K 
Sbjct: 149 YAVMEAAEDDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLDRHKTFENYRDIKG 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IFE   +     LNYDD     LK K+                            + S 
Sbjct: 205 RIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLE--------NGAYIKDGSI 256

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                      +    I      N+   L   S+      +A    +     +G   R  
Sbjct: 257 YISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   NP +   AI  L        G            G    S   +
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDE 364

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  +   +  + L G     ++D   +       + ++ T++        S  +GD V
Sbjct: 365 FVKAFN-GKVKKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSV 423

Query: 448 VV 449
           ++
Sbjct: 424 LL 425


>gi|327458768|gb|EGF05116.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1057]
          Length = 459

 Score = 66.4 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +   + D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIEAFH----PQIAVITNLMPTHLDYHGSLEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYIEGDVLTFRGEAIMQVAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLHGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A     +    +  +        S    GD+V++
Sbjct: 385 VILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQAEPGDIVLL 430


>gi|227431980|ref|ZP_03914000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352265|gb|EEJ42471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 449

 Score = 66.4 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 47/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +V     L+IP+    +V  AL+             +IA+TGS GKTTT  ++   L
Sbjct: 84  DHPLVQKAEKLNIPIL--TEVEIALS--------TFNGRLIAVTGSNGKTTTTSLIRDML 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +  +          +IGVP++         D  + EL    L  +      ++P IA++
Sbjct: 134 KADGQNV----ITAGNIGVPVSEVVFDLTREDTLLLELSSFQLLGL----PDIQPDIALV 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL          +AK  I         + LN D    E  K ++ A  ++   +
Sbjct: 186 TNIFSNHLDYHKTRANYVAAKFHITRHQNANQYLVLNADGQDTEKFKNETEAQVLEFSRT 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      + +        + +  +          +G H  +N+L  + + ++    
Sbjct: 246 ----------KQHFPVAFSNGNLTLTDEIVMPTKDIKLVGPHNQENILAAVTVANLAGVS 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F     R +      +       ++S   +  + + A+            
Sbjct: 296 KPAIREVLKTFSGVAHRLQYLFTVGDVK---YYNDSKATDIEATQTALDSFDC------- 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
                +G   E G+  +        + +L N+  V   G     +     +    V    
Sbjct: 346 -PTIWIGGGLERGDDLERL------LPNLKNVKAVIAVGETQQKIVTLARKAGKPVIAVT 398

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            ++            GDVV++
Sbjct: 399 DVEHAASVAVQLASPGDVVLL 419


>gi|282882890|ref|ZP_06291495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297301|gb|EFA89792.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           lacrimalis 315-B]
          Length = 438

 Score = 66.4 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 137/407 (33%), Gaps = 52/407 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++    +L I +          + L  A ++ S   +IAITG+ GKTTT  ++   L
Sbjct: 71  DHPLLEKARNLGIKII---------SDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQIL 121

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             + KTY           + L         DF + E     L +        +P +A++T
Sbjct: 122 RQVNKTYVVGNIGRGISEIALEAKN----NDFIVIEASSFQLEDTHEF----KPKVALLT 173

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AK +IF   +K     +NYDD   + LK       +K+   +
Sbjct: 174 YVTKDHLDWHKTEDNYRNAKYKIFANQDKDDFSIINYDDRSRDDLKD------LKSNIYY 227

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++  D +                 +           G H  +N++  + I  I     
Sbjct: 228 FSTEKKDIRGCYLDDGKIIFKDGDIREEIIDIKDIKIPGIHNVKNVMGAIIIAKIFNVSN 287

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +++ +F   E R             +  ++S   NP S   A+  ++         
Sbjct: 288 DIIKQSIKIFSGVEHRI---EFVKKVNGVSFYNDSKGTNPDSTLVAVKAMTN-------- 336

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
           +  ++G   + G    S   ++A      N+  + + G     +        I V   + 
Sbjct: 337 KTILIGGGYDKGSDFNSLMENIAP-----NLRSLIVFGQTGPKMAKEAKNYGIEVFIVKD 391

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +        S    GD +++    +S             F +++  L
Sbjct: 392 LPAAVKLGVSLAKKGDSILLSPACASWDMYSSYEERGKHFKKIVKEL 438


>gi|190149288|ref|YP_001967813.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262601|ref|ZP_07544231.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|229470255|sp|B3GZK9|MURC_ACTP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189914419|gb|ACE60671.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872024|gb|EFN03738.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 475

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 148/428 (34%), Gaps = 48/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV ++ +  S   +       IPV        A   LA   R R     IA+ G+
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQ-----RA-QMLAEIMRFRHG---IAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +  K     +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMISMIYTEAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++ +   +    L   G   +  DD     +
Sbjct: 184 -----LQPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADDETVMEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +     +    ++G S+ AD+++  ++Q   +  +  V   G+ ++V+ +  G H A 
Sbjct: 239 APQVGRQVL----TYGFSEKADYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP---- 350
           N    L +        +  + AL+ F     R  +    +      ++ + Y  +P    
Sbjct: 295 NATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVD 354

Query: 351 ------ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                  S      V+    PH   R   +  D  ++     +  +          I   
Sbjct: 355 VTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPI--- 411

Query: 405 WLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              G    AL  ++     V        D L   +   + DGD+++ + + S    R+  
Sbjct: 412 --VGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAGSV--SRISR 467

Query: 463 LLLEEFPA 470
            L E + A
Sbjct: 468 GLAESWKA 475


>gi|332363491|gb|EGJ41273.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK355]
          Length = 459

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 134/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + DMV       IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 94  DNDMVVRALEKKIPVI----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIAQVL 143

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +         D  + EL    L  I        P IAVI
Sbjct: 144 TAGGQN----GLLSGNIGFPASQVAQTASSKDTLVMELSSFQLMGIEAFH----PQIAVI 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P HL     +EE A+AK  I + +     + LN++  + + + +++ A  +    +
Sbjct: 196 TNLMPTHLDYHGSLEEYAAAKWNIQKNMTADDYLVLNFNQDWAKEMASQAQATVVPFSTT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      E   +  + +           G H  +N L T+ +  +   D
Sbjct: 256 ----------EKVDGAYLEGDVLTFRGEAIMQAAEIGVPGSHNIENALATIAVAKLRGID 305

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 306 NQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYNDSKSTNILA------TQKALSGFDNS 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 357 KVILIAG-----GLDRGNEFDELVPDIK--GLKKMVILGQSAPRVKRAADQAGVSYLDAT 409

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GD+V++
Sbjct: 410 DVRDAAHKAFDQAKPGDIVLL 430


>gi|27904701|ref|NP_777827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|31076803|sp|Q89AQ2|MURD_BUCBP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27904098|gb|AAO26932.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 442

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 130/376 (34%), Gaps = 48/376 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +K  IIAITGS GK++  +++   +     T         +IG+P           
Sbjct: 102 FVQETKVPIIAITGSNGKSSVTKIVKEIIQKAGFTTYIG----GNIGIPALNIVNKFAH- 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F I EL    L      T  ++ +IA I  I P HL+ +S   +      +      K  
Sbjct: 157 FFILELSSFQL----ERTFSLKAYIATILNITPDHLNRYSSDIKEYEKAKQKIYKNSKIC 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I ++            +    +    SFG                  +W+  +      
Sbjct: 213 IINVDNP-------VTINRQAQLTKCISFGVHSGD----YHLSHTYTNTWLCYKSLKLIN 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   NML  L IV  L      +++ L  F     R    +        T 
Sbjct: 262 TKKLKLSGRHNYINMLSALAIVHELKISFKISVRILKNFLGLPHRC---QKVYKNNNITW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N AS K+AI  +     + +G+   +LG         +S +++L + +   N 
Sbjct: 319 INDSKSTNIASTKSAIQSI-----NTKGKIRLILGG------DKKSSNLNLLKPILKNNA 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L +  P    +   ET+  +   I   +  GDVV++    SS      
Sbjct: 368 IVIYCYGKDKKELFNLYPHKSKI--FETLQEVMQHISVQVQPGDVVLLSPACSSLDQFSG 425

Query: 453 ---NSCGFYRLINLLL 465
                  F +LI  L+
Sbjct: 426 FEERGNTFVKLIQELI 441


>gi|317508857|ref|ZP_07966496.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
          [Segniliparus rugosus ATCC BAA-974]
 gi|316252818|gb|EFV12249.1| UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
          [Segniliparus rugosus ATCC BAA-974]
          Length = 494

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 1  MNPLWTFHDLLQAIQGHSIG-IVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGH 54
          M PL T   + + + G       P   V      DSR + P   F A+ G   DG 
Sbjct: 1  MIPL-TLRQVAETVGGTLHAVPDPDLVVTAPPEHDSRKVVPGGLFLAVPGERTDGR 55


>gi|304383924|ref|ZP_07366381.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
 gi|304335002|gb|EFM01275.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           marshii DSM 16973]
          Length = 443

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 130/408 (31%), Gaps = 53/408 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV  I   SIP+        +  + A      + A ++ ITGS GKTTT  ++    
Sbjct: 75  EAPMVRKIIDKSIPII-------SEIEFAGRY---THAKMVCITGSNGKTTTTSLIYHIF 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG  L L        F I EL    L          R +IA++ 
Sbjct: 125 REAGYDV----GLAGNIGNSLALQVAEDPHAFYIIELSSFQLD----DMFDFRANIAILL 176

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +   ++   +AK  I +   +  +     DD   +    K     ++  +S
Sbjct: 177 NITPDHLDRYDHCMQNYVNAKMRILQNQTEEDSFIFWNDDPIIKRELQKYDIKAMQYPFS 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K   +   + + +   E+            +      G H   N L      SI    
Sbjct: 237 ELKENGSIGYIEEGRYTLEE-----PTPFNMEQEELSLTGRHNIYNSLAAGIAGSIAGIK 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   K+LS F   E R       +  G    I++S   N  +   A+  +         
Sbjct: 292 KDVIRKSLSDFPGVEHRL---EKVVKVGGVQYINDSKATNVDACWYALDSMRT------- 341

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I ++G     G+   + +  +  ++    +  V+L G     L D      I V  + 
Sbjct: 342 PTILIIG-----GKDKGNDYEPIKALVKEKCVGLVYL-GADNSKLHDNFDHLGIPVRDTH 395

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +M        +    GD V++    +S             F  L   L
Sbjct: 396 SMKECMEACYAMARPGDTVLLSPCCASFDLFKNMEDRGNQFKALARAL 443


>gi|110598577|ref|ZP_01386845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339811|gb|EAT58318.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 465

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 136/389 (34%), Gaps = 44/389 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A       +A ++ ITG+ GKTTT  ++     +    +        +IG+P +   +
Sbjct: 97  EIAALF---CRARVVGITGTDGKTTTATLIHRICEADGLLHNYRAFSVGNIGIPFSSMVL 153

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIF 214
            +   D  + EL    L          RP IAVIT I P HL+ +   +   A+AK  I+
Sbjct: 154 EMHPRDVAVVELSSYQL----ERCVAFRPDIAVITNITPDHLARYEGDMHRYAAAKFRIY 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +   +  T+  N DD       A   A     I  F   + A     +     +   +  
Sbjct: 210 QNQGERDTLIYNDDDPLLTAHFAVDSARFPFQIVPFRMDQRAAHGSGRSMVFLDNDRVVF 269

Query: 275 QLQGKSMEV-------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +       V            G H   N+L  + +  +L  +       LS F   E R 
Sbjct: 270 RTVSGEETVVATADFLKESFRGRHNIYNVLAAVAVSKVLGIESGVVRDVLSDFTGVEHRQ 329

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +        G    I++S   N  +M+ A+           G+ + + G     G+   +
Sbjct: 330 EFVMTINGSG---WINDSKATNLNAMRQALESA-------PGKVVLIAG-----GQDKGN 374

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +  +A ++    ++ +   G     L  A    + V  +E++       + ++  G+ V
Sbjct: 375 DYATIAGLV-RTKVTLIVAIGESKEKLVSAFEGVVPVRPAESLQAAVTMARHAVERGESV 433

Query: 448 VV---KSS---------NSCGFYRLINLL 464
           +     +S             F + +  L
Sbjct: 434 LFSPGCASFDMFENFEDRGRQFKQCVQQL 462


>gi|317009250|gb|ADU79830.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori India7]
          Length = 493

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 126/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +  + +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDNNSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLIDSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYKGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|288553163|ref|YP_003425098.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
 gi|288544323|gb|ADC48206.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pseudofirmus OF4]
          Length = 450

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/446 (17%), Positives = 141/446 (31%), Gaps = 65/446 (14%)

Query: 49  PHYDGHDFILHAVQKGAGLV-------VVNTDMVASIGSLSIPV---FGVDDVLG----- 93
             YD +D      +KG  +V       +++ ++   + +  IP       + V       
Sbjct: 41  KSYDENDQAKALEKKGIKVVCGEHPLSLLDQELDCVVKNPGIPYHNPIVKEAVRRNIPVI 100

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
              +LA      S+A +IAITGS GKTTT  ++   L +  K         N   V   +
Sbjct: 101 TEVELASVL---SEADMIAITGSNGKTTTTTLIYEMLKNSAKN---PLIAGNIGTVSCDV 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A+     D  + E     L           P+++V+  +  AHL      EE  +AK++I
Sbjct: 155 AKGAASDDVIVLEASSFQLLGTENFH----PNVSVLLNLFDAHLDYHGTKEEYVAAKSKI 210

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                +      N DD     +  KS A  +           +  ++        Q  + 
Sbjct: 211 TANQTEDDVFVYNLDDPLVSQVAEKSKAAKLP---------FSTKEVVSEGVYVNQGSIY 261

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + Q           G H  +N+L  +G    + A V      L  F   E R    +  
Sbjct: 262 FKDQLIIALSEVVLPGSHNVENILAAVGAAMTMGAKVTQIQHVLKTFSGVEHRL---QFV 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   N  + K A+            + + +L    + G         L 
Sbjct: 319 KKINDRLFYNDSKATNILAAKKALEAF--------SQPVILLAGGLDRGNEFDELASSL- 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
                 N+  +   G     L      +    V Y++ +            +GDV+++  
Sbjct: 370 -----SNVKALVAFGETKEKLARTAKGAGIAEVEYADRVKDAVECAYRLSEEGDVILLSP 424

Query: 450 -KSS---------NSCGFYRLINLLL 465
             +S             F   ++ L 
Sbjct: 425 ACASWDQYKTFEERGNEFVAAVDKLK 450


>gi|206561804|ref|YP_002232569.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia J2315]
 gi|198037846|emb|CAR53790.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
           [Burkholderia cenocepacia J2315]
          Length = 512

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 78/480 (16%), Positives = 147/480 (30%), Gaps = 51/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   F+  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLQAGDVFVAYA---VDGADNRAFMADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   D +    ++ +    V  +     ++A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPDGLTDAPAVPVA-LAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++ +  A IG+     G+P  L                             
Sbjct: 125 TQWIATALTALHQPCAVIGTLGT--GMPGQLVPTGFTTPDAPQLQRSLAQLRAAGAQAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      +    A               LN
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVLN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G +   D          +  +  +   ++      +
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDAD 301

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 302 VEVGTLGTFNVSNLLAVLGSLLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVV 361

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P ++   +  L  I+    GR + + G     G    +    L   ++     
Sbjct: 362 ID-YAHTPDALDKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLAD 416

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +         E      L         DVVV+  K 
Sbjct: 417 EVVVTSDNPRSEDPQHIIDQVIAGMTAPERARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|229111382|ref|ZP_04240935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
 gi|228672158|gb|EEL27449.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-15]
          Length = 450

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 126/383 (32%), Gaps = 38/383 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV    +     + +        +    +LA      S+A  + ITGS GKTTT  +   
Sbjct: 76  VVKNPGIPYSNPILVAAIEKQIPIVTEVELA---YRISEAPFVGITGSNGKTTTTMLTFE 132

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L              N   V   +A+   + +  + EL    L  +     L +P IA 
Sbjct: 133 MLKE---GQKHPVIAGNIGTVACEVAQDAKENEVVVTELSSFQLMGVE----LFQPKIAA 185

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
              +  AHL      +E   AKA IF+   +     +N DD+    L A  ++ G K ++
Sbjct: 186 FLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDYSVINADDADVMALSA--YSKGQKILF 243

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S  K       ++      +   +                G H  +N+L  + I  +L  
Sbjct: 244 STTKEIEDGACIKDNALYFKGEKVIEVSD-------IVLPGQHNLENILAAMSIAKLLGT 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +     L  F   + R                ++S   N  + + A+S  +Q      
Sbjct: 297 SNEAITVVLKRFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLA 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
           G            G    +   DL       N+  +   G     L  A  ++    +  
Sbjct: 354 G------------GLDRGNEFDDLIPYFK--NVKAIVTFGQTAPKLVRAAEKAGLDIIES 399

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            +T+D   +   +   DGDVV++
Sbjct: 400 VDTLDEAVVKAYAHSKDGDVVLL 422


>gi|15611744|ref|NP_223395.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori J99]
 gi|4155222|gb|AAD06244.1| D-ALANYL-D-ALANINE-ADDING ENZYME [Helicobacter pylori J99]
          Length = 493

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          +R  +   + +  E  + G       
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VRNVQSTLKGTSFETLINGVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +    P   R       L      +ID+S
Sbjct: 334 KVLGEFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRL----QLLEANQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHQGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASKLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|28871545|ref|NP_794164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|38257960|sp|Q87WY3|MURD_PSESM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28854796|gb|AAO57859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016732|gb|EGH96788.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 448

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKFLAFQFENLMPVSELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWLRERNGVD---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +     G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIGGKLVLIAGGDGKGADFSG-LRAPVAKYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQRGDAVLL 420


>gi|160947656|ref|ZP_02094823.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
 gi|158446790|gb|EDP23785.1| hypothetical protein PEPMIC_01591 [Parvimonas micra ATCC 33270]
          Length = 466

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 123/391 (31%), Gaps = 33/391 (8%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++ + + +    S+ +P           L  L            IAI+GS GK+TT  M
Sbjct: 79  AILPDNEELIKAKSIGVPCV----TRGQFLGALMRNYTHS-----IAISGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L +     + +   N      +    +  + D+ + E        + +      P 
Sbjct: 130 ISKILINSPFDPSILIGGNLDE---IDGNVLCGNEDYLVTEACEFKANILHYY-----PS 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A+I  I   HL  +  ++ I        + L++     +N DD     L          
Sbjct: 182 MAIILNIDEDHLDFYKNLDHIVDTFIGYMKNLDENSKAIINIDDPNCLPLLE-HIKGETI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T     ++   +     + +     +     +        + IG H   N    +     
Sbjct: 241 TFGINNENATYNITNISFDKVGHPCFDIENEKFGKHHFCLNIIGRHNIYNAAAAIIATYE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAAI 357
              DV+    A+S +     R + Y    N    T++ +  +         +  +     
Sbjct: 301 TGIDVEYIKNAISKYKNLHRRMEVYGVIGNGKKATILTDYGHHPREIKSCLSSIAEHKEG 360

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            ++    PH   R  A+L D  +  +      +      +            H + L + 
Sbjct: 361 RLVCIFQPHTYSRTKALLNDFAKCFDDCDEVIVTEI-YAAREKFDPTI----HSIDLVEK 415

Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           L +  ++  Y +T +    +I  +  D D +
Sbjct: 416 LNKNGVNAIYLKTFEEARDYIFETFKDKDTI 446


>gi|294670612|ref|ZP_06735490.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307651|gb|EFE48894.1| hypothetical protein NEIELOOT_02336 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 445

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DVVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRGGGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  Q   
Sbjct: 218 VLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLISTQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +    G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAAGLPREALLEHIKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQKAYTQAEAGDIVLL 418


>gi|229047597|ref|ZP_04193187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
 gi|228723844|gb|EEL75199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH676]
          Length = 450

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTTKENEDGACIKDNALYFKGEKVIEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|325205489|gb|ADZ00942.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M04-240196]
          Length = 445

 Score = 66.4 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 126/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRDDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++        G +  +   + +   +  R+  +  + +   +  Q   
Sbjct: 218 VLNS-------DDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +      + +      
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTPLRDALVGK------ 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T+        +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|297544895|ref|YP_003677197.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842670|gb|ADH61186.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 454

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 108/355 (30%), Gaps = 34/355 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A   SKA I AITG+ GKTTT  +L     +  +          +IG PL  A M   
Sbjct: 100 EFAYRFSKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVY----VAGNIGYPLIYAVMEAS 155

Query: 160 VD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            D F + E+    L          +P I+ I  I P HL+     E     K  IFE   
Sbjct: 156 EDAFIVAEISSFQL----ETIKEFKPKISCIINITPDHLNRHKTFENYRDIKGRIFENQR 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LN+DD     LK K+                              S      + 
Sbjct: 212 ENEYTVLNFDDPVTWSLKNKAKCRVFPFSRKNSLE--------NGAYVKNGSIYISVDKN 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    I      N+   L   S+      +     +     +G   R         
Sbjct: 264 AKKIIDIEEIYIPGEHNLENALAASSVAYLSGISVDVIANTLKTFKGVEHRIEFVDEING 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP +   AI  L        G            G    S   +  +  + 
Sbjct: 324 VKFYNDSKGTNPDASIKAIQALKPPIVLIAG------------GYDKGSEFDEFVKAFN- 370

Query: 399 YNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G     +KD   +       + +++T++        S  +GD V++
Sbjct: 371 GKVKKLILIGQTAKKIKDTAKKYYYPEDDILFADTLEEAVKKAYESAKEGDSVLL 425


>gi|149186201|ref|ZP_01864515.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830232|gb|EDL48669.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. SD-21]
          Length = 469

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/407 (18%), Positives = 133/407 (32%), Gaps = 52/407 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA +VV +T +  +   ++  +     V  V  A   LA   RLRS    IA+ G+ GKT
Sbjct: 67  GAAVVVTSTAVRRTNPEVAHALENRIPV--VRRA-EMLAELMRLRS---TIAVAGTHGKT 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  M+   L         I                  D D+ + E   S          
Sbjct: 121 TTTSMIASLLDCGAIDPTVINGGIIEQ---YGSNARLGDSDWMVVEADES-----DGSFL 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   IAV+T I P HL ++   + +  A  E    +   G   L  D    + +  K  
Sbjct: 173 RLDGTIAVVTNIDPEHLDHYGDFDGVKDAFVEFIHNVPFYGAAVLCIDHPEVQAVIGK-- 230

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQ 294
            +  + + ++G +  AD      +     +  +V ++ +  E            G H  Q
Sbjct: 231 -VRDRRVVTYGFNLQADICGVNVQPHEGGNRFDVIVRQRGEEDRRIENVCLPMPGRHNVQ 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   +    +      S F     R               + + Y  +P  ++
Sbjct: 290 NALAAIAVSIEMGCPDEVICNGFSSFGGVRRRFTNVGSVAGA----TVIDDYGHHPVEIR 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLSG 408
           A +    + + +       V+  M          H  + +            I+ V+ +G
Sbjct: 346 AVLEAAREATKNR------VIAVM--QPHRYTRLHDLMDDFQSSFNEADQVYITPVYAAG 397

Query: 409 FH------VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                     AL + L    H      E  D L   + + + +GD+V
Sbjct: 398 EDPIEGVSAEALVEGLKSRGHRNAATVEDRDDLAKKLATDVEEGDLV 444


>gi|89902193|ref|YP_524664.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
 gi|109892729|sp|Q21SX0|MURC_RHOFD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89346930|gb|ABD71133.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodoferax ferrireducens
           T118]
          Length = 477

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 85/434 (19%), Positives = 143/434 (32%), Gaps = 45/434 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GA  VV +T + A            IPV         +  LA   RL++
Sbjct: 56  GH---EAAHVAGADAVVTSTAVQADNPEVLSAREKHIPVV----PRAVM--LAELMRLKT 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+        +     +       AR+    D+ + E
Sbjct: 107 G---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS--AGVNARLGQG-DYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
              S           + P +AV+T I   H+  +             F   +   GT  L
Sbjct: 161 ADES-----DASFLNLSPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     +  +         +  G    A        Q          +    ++VV 
Sbjct: 216 CTDDPAVRDIVPQVTCPISSYGFEEGAELRAVNVRAVDGQMHFTVQRRNGVVLPDLDVVL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DE 344
           +  G H   N L  + +   L        KAL+ F     R +RY     Q   T    +
Sbjct: 276 NLAGRHNVLNALSAIAVAVELNIADAVVQKALAGFKGVGRRFQRYGEVRAQDGGTFTLID 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A ++      P        VL         ++    D  +V++  +   +
Sbjct: 336 DYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFIKVIAQADAVLL 391

Query: 402 SHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G           L  AL  +  +   + + +  +   I  +  DGDVV+   + 
Sbjct: 392 AEVYGAGEAPIVAADGRTLARALRVAGRIEPVFVDDIAAMPQAIADNARDGDVVLCMGAG 451

Query: 454 SCGF--YRLINLLL 465
           S G    +++ +L 
Sbjct: 452 SIGAVPAKVLEMLQ 465


>gi|315639620|ref|ZP_07894760.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
 gi|315484581|gb|EFU75037.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           italicus DSM 15952]
          Length = 454

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 122/408 (29%), Gaps = 55/408 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V    S +IP+         L          + A II ITG+ GKTTT  M+   L+
Sbjct: 88  HPFVQEALSRNIPII----TEVELA------YEIADAPIIGITGTNGKTTTTTMIGHVLN 137

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
             +       + N              D +  + EL    L           P IAVIT 
Sbjct: 138 QERSNSVARLAGNIGYPASSVAQEAIADDE-LVMELSSFQLM----GITDFHPEIAVITN 192

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I  AH+       E   AK  I + +     + +N++ +    L     +     +    
Sbjct: 193 IYEAHIDYHGSRPEYVQAKWRIQKNMTDKDYLVINWNQTELRELAK---STKATVVPFST 249

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           + +         +   +   +                G H  +N L  + + S+     +
Sbjct: 250 EGQVDGAYEIDGQLFFKGQLIMSVD-------ELGVPGQHNVENALAAIAVASLKQVRPE 302

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               ALS F     R    +     G     ++S   N  + + A+              
Sbjct: 303 AIKAALSQFTGVPHRT---QYVGTHGDVRFFNDSKATNSLATRMALGGFDHQK------- 352

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSET 429
           + +L    + G        DL        I  + L G     L DA  ++    + +SE 
Sbjct: 353 LVLLAGGLDRGNSFDELIPDL------KGIKAIVLFGQTKDKLADAAQKAGIPIIKFSEN 406

Query: 430 MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLL 465
           ++       +    GD +++    +S             F + +  L 
Sbjct: 407 VESAVPLAFTLSEPGDTILLSPANASWDQYPNFEVRGDRFVQAMQQLK 454


>gi|254362461|ref|ZP_04978569.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153094053|gb|EDN74965.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 475

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 143/407 (35%), Gaps = 48/407 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +  +   +       IPV        A   LA   R R     IAI G+
Sbjct: 76  AGASVVVVSTAIDETNPEIIAAREARIPVI-----RRA-EMLAEIMRFRHG---IAIAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +  K     +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMISMIYTEAKLDPTFVNGGLVKST---GKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++          L   G   +  DD     +
Sbjct: 184 -----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMCADDETVMEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +      + + ++G S+NAD+++  ++Q   ++ +  V   G+ ++V+ +  G H A 
Sbjct: 239 APRV----GRQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSGERIDVLLNVPGMHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +        +  + AL+ F     R  +    +      ++ + Y  +P  + 
Sbjct: 295 NATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIMLVDDYGHHPTEVD 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-------- 406
             I      S     R + +          ++    +  +VL    +  + L        
Sbjct: 355 VTIQAAR--SGWEGKRVVMIFQPHRY--SRTRDLFDEFVQVL--SKVDALILLDVYAAGE 408

Query: 407 ---SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
               G    AL  ++     V        D L   +   + DGD+++
Sbjct: 409 APIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLIL 455


>gi|325684350|gb|EGD26519.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 460

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 127/414 (30%), Gaps = 56/414 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MVA      +P+    +   AL+         S++  + +TGS GKTTT  +    +
Sbjct: 86  ENPMVAKASEKGVPII--TEPEVALSA--------SESPYVCVTGSNGKTTTVMLTKQIM 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
               +          +IG P++   +      D  + E+    L         + P +A 
Sbjct: 136 DHYLQKQGHHAYAVGNIGWPISEVVLNQAGPDDLLVVEMSSFQLM----GVTDIEPKVAA 191

Query: 189 ITT-IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           I       HL      +    AK  +  G  +  + +   +    ++L  +  A   K +
Sbjct: 192 IVDIYNNVHLDYHKTFDNYVDAKLNV--GRFQKASDYFLANFDQKDILTREEKATKAKIL 249

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF + +      +  M                G H  QN L+ +GI S++ 
Sbjct: 250 TFSENDPAADFYIGQDYLMHGEEKMMKIAD-------IKLPGIHNLQNSLVAIGISSLMG 302

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A  D     LS F        R +         + ++S + N  +   AI    Q     
Sbjct: 303 AGKDDIAAVLSTFTG---AEHRLQYVTTLDGVKVYNDSKSTNIEAATVAIQSFKQPEVLL 359

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVH 425
            G            G         L ++    ++  +   G     L DA  ++    + 
Sbjct: 360 AG------------GLDRGFVFDSLVDLFKK-HVKAIVTYGETRYLLADAARKAGIKTIV 406

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             + +             GDV++     +S             F + +  L E+
Sbjct: 407 VVDNLHEGVKAASKLAEAGDVLLFSPACASWDQFKTFEERGEYFVKYVKELEEK 460


>gi|300813304|ref|ZP_07093659.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300512575|gb|EFK39720.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 438

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 138/407 (33%), Gaps = 52/407 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++    +L I +          + L  A ++ S   +IAITG+ GKTTT  ++   L
Sbjct: 71  DHPLLEKARNLGIKII---------SDLEFAYKISSCKNLIAITGTNGKTTTTTLVGQIL 121

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
             + KTY           + L         DF + E     L      TH  +P +A++T
Sbjct: 122 RQVNKTYVVGNIGRGISEIALEAKN----NDFIVIEASSFQL----EDTHEFKPKVALLT 173

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL      +   +AK +IF   +K     +NYDD   + LK       +K+   +
Sbjct: 174 YVTKDHLDWHKTEDNYRNAKYKIFANQDKDDFSIINYDDRSRDDLKD------LKSNIYY 227

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++  D +                 +           G H  +N++  + I  I     
Sbjct: 228 FSTEKKDIRGCFLDDGKIIFKDGDIREEIIDIKDIKIPGIHNVKNVMGAIIIAKIFNISN 287

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +++ +F   E R             +  ++S   NP S   A+  ++         
Sbjct: 288 DIIKQSIKIFSGVEHRI---EFVKKVNDVSFYNDSKGTNPDSTLVAVKAMTN-------- 336

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
           +  ++G   + G    S   ++A      N+  + + G     +        I V   + 
Sbjct: 337 KTILIGGGYDKGSDFNSLMENIAP-----NLRSLIVFGQTGPKMAKEAKNYGIEVFIVKD 391

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +        S    GD +++    +S             F +++  L
Sbjct: 392 LPAAVKLGVSLAKKGDSILLSPACASWDMYSSYEERGKHFKKIVKEL 438


>gi|256830370|ref|YP_003159098.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579546|gb|ACU90682.1| UDP-N-acetylmuramate/alanine ligase [Desulfomicrobium baculatum DSM
           4028]
          Length = 458

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/431 (16%), Positives = 139/431 (32%), Gaps = 62/431 (14%)

Query: 44  FAIK----GPHYD-GHDFILHAVQK--GAGLVV----VNTDMVA--SIGSLSIPVFGVDD 90
            A++    G     GH+      +   GA +VV    V+ D        +  +P+     
Sbjct: 42  VALRLETLGATVHAGHE-----RKNVQGAQVVVRSTAVSEDNPELEEARAHGVPII---- 92

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
               +  LA   RL+     +A+ G+ GKTTT  +L             I     +    
Sbjct: 93  PRAEM--LAELMRLKVG---VAVAGTHGKTTTTSLLATIFMEAHLDPTVIIGGRLN---A 144

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                M     + I E   S           + P I+++T +   HL  +  ++EI  + 
Sbjct: 145 YGSNAMLGQGRYLIAEADES-----DGSFLCLLPRISIVTNVDADHLDYYKDLDEIRDSF 199

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +    +   G   +  DD   + + ++        + ++G  +  D +       +   
Sbjct: 200 VDFMNSVPFYGLNVVCGDDKGVQSILSRVRRP----VMTYGFGEENDLRAEIISCEAGSR 255

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +   +      EV     G H   N L  +G+           I  L  F     R +  
Sbjct: 256 FNVYRQSEFWGEVTLTHPGRHNVLNALAAIGVAMEAGVPKKDIIHGLGAFAGVGRRFEH- 314

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +    L+ + Y  +P  + A +       PH       V+         +Q+   
Sbjct: 315 ---KGERNGVLVVDDYGHHPTEIAATLETARLCYPHK----RLVVAFQPHRFTRTQALFG 367

Query: 391 DLAEVLSLYNISHVWLS-----------GFHVLALKDALPR--SIHVHYSETMDGLFLFI 437
           D ++V +   +  + L+           G    +L  A+ +  S  V + E    +   +
Sbjct: 368 DFSKVFA--GVDQLLLTEIYPASESPIPGVSGQSLAQAIRQVTSTPVRFFEDFGSMQAAL 425

Query: 438 QSSLVDGDVVV 448
              L +GD+ +
Sbjct: 426 GEILQEGDLFL 436


>gi|322389010|ref|ZP_08062580.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
 gi|321144315|gb|EFX39723.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           parasanguinis ATCC 903]
          Length = 449

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 133/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV         L  L       S A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMVEKALEKGIPVL----TEVELAYLI------SDAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   + D  + EL    L  I        P IAVI
Sbjct: 135 TAAGQ----GGLLSGNIGFPASQVAQTATEKDVLVMELSSFQLMGIEAFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E   +AK  + + + +   I LN++    + L  K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQDLAKELATKTKARVLP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   ++ + +           G H  +N L T+ +  +   +
Sbjct: 243 FSTIEKVDG------AYLEDGLLKFKGEAVMRADELGVPGSHNVENALATIAVAKVRGVE 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NEVIKETLSAFGGVKHRL---QYVDEIQGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   ++   +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPHIA--GLKEMVILGESAPRVKRAADKAGVSYVDAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DVADAAKKAFDLASPGDVVLL 421


>gi|86160187|ref|YP_466972.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|118595640|sp|Q2IG29|MURD_ANADE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85776698|gb|ABC83535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 462

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 128/432 (29%), Gaps = 58/432 (13%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG-VDDVLGALNKLAVAAR 103
           +D  DF       GA LVV +  +  +   +       +PV+G V        +LA    
Sbjct: 63  HDAADF------TGADLVVASPGVPLANPEIQAARRRGVPVWGEV--------ELAARFL 108

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDF 162
                 I+ ITG+ GK+TT  +    L+              ++G PL+   +  +    
Sbjct: 109 G--GLPIVGITGTNGKSTTTALTGALLA-----RHRRTFVGGNLGTPLSELVLSGEPAAA 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       R  +A +  + P HL  +  ++  A+AKA +F   E    
Sbjct: 162 AVVELSSFQLEGIERF----RARVAAVLNVTPDHLDRYPDVDAYAAAKARLFATQEPDDV 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N  D     L     + G    + FG    A  +    +     + +    +G++ E
Sbjct: 218 AVANARDP--RALAMAGASRGDLHTFGFGAPVPASARDEGGEPGPGGTAIWYTPRGRAPE 275

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               H        N    +  V              +      G   R            
Sbjct: 276 RYQLHNRALRGRHNRENAMAAVLCARLMGVPGEAVQAGLDAFPGLHHRLELVAEGRGVEW 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S          ++    G    VL     MG   +         L    +
Sbjct: 336 VNDSKATNVDSTFVG------LAAFPAGAPRVVLI----MGGRGKKAPYAPLRPLFGGRV 385

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             +   G    A++  L           + G           GDVV++    +S      
Sbjct: 386 KALLTIGEDAPAIERELGDLAPTEPCGDLPGAVRRAAVLSGPGDVVLLSPACASYDQFAS 445

Query: 453 ---NSCGFYRLI 461
                  F RL 
Sbjct: 446 YEERGEAFRRLA 457


>gi|171778709|ref|ZP_02919805.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282666|gb|EDT48090.1| hypothetical protein STRINF_00657 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 451

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/381 (20%), Positives = 134/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 85  DNPMVARAIEKNIPVI-------TEVELAYMI---SDAPIIGITGSNGKTTTTTMIAETL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L           PH+AVI
Sbjct: 135 NN----GGKSGLLSGNIGFPASEVAQTATDKDTLVMELSSFQLMGTD----TFHPHMAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+    G EE  +AK  I + +     + LN++    + L  K+ A  I    +
Sbjct: 187 TNLMPTHIDYHGGFEEYVAAKWNIQKNMTAEDYLVLNFNQDLAKELAQKTAAQVIPFSTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ I  +    
Sbjct: 247 ----------EKVDGAYLDGDTLYFKDEAIMKASEIGVPGNHNVENALATIAIAKLSGIA 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NEAIKETLSHFGGVKHRL---QALGEVNGIKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++ +    ++
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGVKLMVILGESAPRVKRAADKAQVPYVDAK 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        S    GDVV++
Sbjct: 401 DVADAARIAYSKAEAGDVVLL 421


>gi|314933359|ref|ZP_07840724.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
 gi|313653509|gb|EFS17266.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           caprae C87]
          Length = 449

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 129/416 (31%), Gaps = 56/416 (13%)

Query: 72  TDMVASIGSLSIPV---FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEML 126
            D    + +  IP       + V   L  L     + L S+A II +TG+ GKTT   ++
Sbjct: 70  DDNPIIVKNPGIPYTVSIIDEAVRRGLKILTEVELSYLISEAPIIGVTGTNGKTTVTSLI 129

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                    T    G+      V   +A+     ++ I EL    L  I       +PHI
Sbjct: 130 GDMFKKSIITGRLSGNIGY---VASKVAQEAKADEYLITELSSFQLLGINEY----KPHI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I  AHL     +E   +AK +I++   +   +  NY     +    ++  L  KT
Sbjct: 183 AIITNIYSAHLDYHESLENYQNAKKQIYKNQTEDDYLICNYH----QRHLIETENLKAKT 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +Y   + +     ++          +            +           ++    V  +
Sbjct: 239 LYFSTQQEVNGIYIKDGFIVFNGVRIINVKDLVLPGEHNLENILAAVLAAILAGVPVKAI 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              + T            G   R +           ++S   N  + + A++   Q    
Sbjct: 299 VDSLTTFS----------GIDHRLQYIGTNRTNKYYNDSKATNTLATQFALNSFQQPIIW 348

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVH 425
             G            G    +   +L   ++  N+  + + G            +  +V 
Sbjct: 349 LCG------------GLDRGNDFDELIPYMN--NVRVMIVFGETQEKFAKLGNSQGKYVI 394

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
            +  ++     IQ  +   DVV++    +S               + I       P
Sbjct: 395 KATNVEDAVDKIQDIIEPNDVVLLSPACASWDQYKTFEERG---EKFIERFRAHLP 447


>gi|299143955|ref|ZP_07037035.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
 gi|298518440|gb|EFI42179.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           sp. oral taxon 386 str. F0131]
          Length = 438

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 96/320 (30%), Gaps = 40/320 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + D+ + E     L      T+  +P ++VIT +   HL     I    +AK +IF+   
Sbjct: 146 EDDYIVIEASSFQL----EYTYDFKPIVSVITNVTSDHLDWHGNISNYKNAKYKIFKNQN 201

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +      NY D   + L                   + +   +      E          
Sbjct: 202 EDDYTIFNYRDQNLKSLS----------FDRDIYYFSLEDSGKLGTFVKEGGIYFRSKDS 251

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +  + I      N+   L   +I  +                G   R         
Sbjct: 252 TEFIMSVNDIKIPGVHNVENVLASTAIAKSLGIKNEVIKKSISNFMGVEHRIEFVRELNG 311

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP S   AI+ +       E   I + G   +  + S+  +I L +    
Sbjct: 312 VKYYNDSKGTNPDSTIMAINAI-------EKNIILIAGGYDKKADFSEMLNIGLGK---- 360

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
             +  + L G     L+         ++    +D   +   S    GDVV++    +S  
Sbjct: 361 --VKKLILLGETADILQKISKPLGYEIYMVNDLDKAVMLSNSIASSGDVVLLSPACASWD 418

Query: 453 -------NSCGFYRLINLLL 465
                      F +L+N L+
Sbjct: 419 MYTSYEKRGEHFKKLVNELI 438


>gi|224536612|ref|ZP_03677151.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521703|gb|EEF90808.1| hypothetical protein BACCELL_01487 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 444

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 118/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVATDQHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYKFRANIAVLMNITPDHLDRYNHCMQNYVDAKFRITQNQTPEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIKRELDKHGLCAHLYPFSAMKEDGAIAYVEDGEVEINEPIAFNMEQE-----KL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++   + +   +ALS F   E R               I++S
Sbjct: 268 ALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVEHRL---EKVATVRGVEFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L D   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCCASFDLFNSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGDQFKEYVRAL 444


>gi|308182899|ref|YP_003927026.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
 gi|308065084|gb|ADO06976.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori PeCan4]
          Length = 493

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 131/344 (38%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +      T YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLTDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  +++   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLEIERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNIESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKNPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|296504406|ref|YP_003666106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
 gi|296325458|gb|ADH08386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis BMB171]
          Length = 424

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 81  YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 137

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 138 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 193

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 194 SVINADDADVMALSA--YSKGQKILFSTTKEIEDGACIKDNALYFKGEKVIEVSD----- 246

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 247 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 301

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 302 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 347

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 348 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 396


>gi|30022001|ref|NP_833632.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 14579]
 gi|228960130|ref|ZP_04121794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229129190|ref|ZP_04258163.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|229146484|ref|ZP_04274855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|60390083|sp|Q819Q2|MURD_BACCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29897557|gb|AAP10833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 14579]
 gi|228637117|gb|EEK93576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST24]
 gi|228654427|gb|EEL10292.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-Cer4]
 gi|228799646|gb|EEM46599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 450

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTTKEIEDGACIKDNALYFKGEKVIEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|329124133|ref|ZP_08252680.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
 gi|327467558|gb|EGF13056.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus aegyptius ATCC
           11116]
          Length = 475

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELIPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPDNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGACRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVSVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     +          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKIDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|315586591|gb|ADU40972.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Helicobacter pylori 35A]
          Length = 493

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|213966569|ref|ZP_03394720.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
 gi|301384716|ref|ZP_07233134.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059796|ref|ZP_07251337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato K40]
 gi|302131743|ref|ZP_07257733.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928419|gb|EEB61963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. tomato T1]
          Length = 448

 Score = 66.4 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 120/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKFLAFQFENLMPVSELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R     G     ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLSSLREFTGLEHRCQWLRERNGVG---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +     G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIGGKLVLIAGGDGKGADFSG-LRAPVAKYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQRGDAVLL 420


>gi|294787657|ref|ZP_06752901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
 gi|294483950|gb|EFG31633.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Simonsiella
           muelleri ATCC 29453]
          Length = 443

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 104/348 (29%), Gaps = 35/348 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                  IIAITGS GKTTT  ++   L         +        +   L R     D 
Sbjct: 103 LKNQSDKIIAITGSNGKTTTTSLVG-YLCEQSGLDTVVAGNIGMPVLEAWLVRGGKSADV 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L    +L        A    I+  HL  +  + + A  K  IF G      
Sbjct: 162 WVLELSSFQLETTDYLDADA----ATCLNISEDHLDRYDDLLDYARTKDMIFNGKAIQVL 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +                  + I+ F  S++ D+ L       +    ++  Q     
Sbjct: 218 NADDAFCCA--------MKRENRPIHYFSLSQSIDYYLDSVSGSLKHQGADLMPQTDIP- 268

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                     + N+   L  +++  +        L      +G   R      +     I
Sbjct: 269 -------LQGSHNVANVLAALALCESVGLARADLLKYIRVFKGLPHRVEKVGEKNGVIFI 321

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  AAI            +   + G M +  + +          +    + 
Sbjct: 322 DDSKGTNVGATVAAI-------VGLPEKIWLIAGGMGKGQDFTP------LRGVLRGKVG 368

Query: 403 HVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V+L G     +   L    + + + +T+        S    GD+V++
Sbjct: 369 AVFLIGVDAPKIARDLDNCGVDLIFCDTLPEAVQRAYSQAKSGDIVLL 416


>gi|323352742|ref|ZP_08087712.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
 gi|322121778|gb|EFX93524.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis VMC66]
          Length = 459

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDMLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQVAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEIAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 385 VILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQADPGDIVLL 430


>gi|145633131|ref|ZP_01788863.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145635590|ref|ZP_01791288.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148826248|ref|YP_001291001.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229844906|ref|ZP_04465044.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
 gi|166224693|sp|A5UCW7|MURC_HAEIE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|144986357|gb|EDJ92936.1| D-alanine--D-alanine ligase [Haemophilus influenzae 3655]
 gi|145267152|gb|EDK07158.1| N-acetylglucosaminyl transferase [Haemophilus influenzae PittAA]
 gi|148716408|gb|ABQ98618.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           PittEE]
 gi|229812287|gb|EEP47978.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           6P18H1]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 147/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I      D +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIDNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|16273065|ref|NP_439297.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae Rd
           KW20]
 gi|260580223|ref|ZP_05848053.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
 gi|1171071|sp|P45066|MURC_HAEIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33356936|pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356937|pdb|1GQQ|B Chain B, Murc - Crystal Structure Of The Apo-Enzyme From
           Haemophilus Influenzae
 gi|33356938|pdb|1GQY|A Chain A, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|33356939|pdb|1GQY|B Chain B, Murc- Crystal Structure Of The Enzyme From Haemophilus
           Influenzae Complexed With Amppcp
 gi|1574695|gb|AAC22794.1| UDP-N-acetylmuramate--alanine ligase (murC) [Haemophilus influenzae
           Rd KW20]
 gi|260093507|gb|EEW77440.1| UDP-N-acetylmuramate-alanine ligase [Haemophilus influenzae RdAW]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|303251841|ref|ZP_07338012.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249142|ref|ZP_07531149.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649271|gb|EFL79456.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854430|gb|EFM86626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 148/428 (34%), Gaps = 48/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV ++ +  S   +       IPV        A   LA   R R     IA+ G+
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQ-----RA-QMLAEIMRFRHG---IAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +  K     +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMISMIYTEAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++ +   +    L   G   +  DD     +
Sbjct: 184 -----LQPMVSVVTNIEPDHMDTYGGDFEQMRATYVKFLRNLPFYGLAVMCADDETVIEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +     +    ++G S+ AD+++  ++Q   +  +  V   G+ ++V+ +  G H A 
Sbjct: 239 APQVGRQVL----TYGFSEKADYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP---- 350
           N    L +        +  + AL+ F     R  +    +      ++ + Y  +P    
Sbjct: 295 NATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVD 354

Query: 351 ------ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                  S      V+    PH   R   +  D  ++     +  +          I   
Sbjct: 355 VTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPI--- 411

Query: 405 WLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              G    AL  ++     V        D L   +   + DGD+++ + + S    R+  
Sbjct: 412 --VGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAGSV--SRISR 467

Query: 463 LLLEEFPA 470
            L E + A
Sbjct: 468 GLAESWKA 475


>gi|322387387|ref|ZP_08060997.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
 gi|321141916|gb|EFX37411.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           infantis ATCC 700779]
          Length = 450

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 141/389 (36%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A I+ ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIVGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +   +   D D  + EL    L  I+     
Sbjct: 127 TTMIGEVLTAAGQN----GLLSGNIGYPASQVAQTATDKDTLVMELSSFQLMGIQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      E+  +AK  I   +     + LN++    + L  K++A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEDYVAAKWNIQSNMTAADYLVLNFNQELAKELATKTNA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 AVVP----FSTLEKVDG------AYLEDGLLYFRGEKVMAADEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D +T  + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNETIKETLSAFGGVKHRL---QFVDQINGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERIKRAADKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +            +GDVV++
Sbjct: 393 GVAYVDATDIADATRKASELAEEGDVVLL 421


>gi|319776620|ref|YP_004139108.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
 gi|317451211|emb|CBY87444.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           F3047]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGESPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|301169879|emb|CBW29483.1| UDP-N-acetylmuramate:L-alanine ligase [Haemophilus influenzae
           10810]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|229134722|ref|ZP_04263531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
 gi|228648768|gb|EEL04794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST196]
          Length = 450

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++ +     IP+  V +V  A +  A           + ITGS GKTTT  +    L
Sbjct: 85  SNPLLVAAKEKQIPI--VTEVELAYSISAAPF--------VGITGSNGKTTTTMLTFEML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         N   V   +A++  + +  + EL    L  +       +P IA   
Sbjct: 135 KE---GQKHPVIAGNIGTVACEVAQLAKENEVVVTELSSFQLMGVE----SFQPKIAAFL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL      +E   AKA IF+   +     +N DD+    L A  ++ G K ++S 
Sbjct: 188 NLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSIINADDADVMALSA--YSKGQKVLFST 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K       ++      +   +                G H  +N+L  + I  +L    
Sbjct: 246 TKEIEDGAYIKDNALYFKGEKVVKVSD-------IVLPGKHNLENILAAMSIAKLLGVSN 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  I  L  F   + R                ++S   N  + + A+S  +Q      G 
Sbjct: 299 EAIIAVLKSFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLAG- 354

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
                      G    +   DL       ++  +   G     L  A  ++    +   +
Sbjct: 355 -----------GLDRGNEFDDLIPYFK--HVKAIVTFGQTAPKLVRAAEKAGLDVIESVD 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           T+D   +   +   DGDV+++
Sbjct: 402 TLDDAVVKAYAHSTDGDVILL 422


>gi|167765846|ref|ZP_02437899.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|167712563|gb|EDS23142.1| hypothetical protein CLOSS21_00337 [Clostridium sp. SS2/1]
 gi|291559201|emb|CBL38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [butyrate-producing
           bacterium SSC/2]
          Length = 454

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 118/393 (30%), Gaps = 48/393 (12%)

Query: 98  LAVAARLRSKATI----IAITGSVGK------TTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +A     + K       +A   S G+      T  K   T     I K Y        +I
Sbjct: 85  IAQMFYDQEKPVWSEIELAYQASKGRIAAITGTNGKTTTTALTGEIMKGYYESSFVVGNI 144

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
           G+P T   +    +  +    +S            +P +  +  I P HL     +E  A
Sbjct: 145 GIPYTSVALDTK-EDSVTTAEISSF--QLETIVDFKPDVCAVLNITPDHLDRHGTVEVYA 201

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K  I +   K   + LNY+D     +  +++   +         +    +   +    
Sbjct: 202 QTKESIGKNQTKDQVMVLNYEDDTTRAMADRANGTVLFFSLHHKIKEGVSMEGDAFIIEE 261

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                  + Q        + +G H  +N+L  + +   +   V    + +  F   E R 
Sbjct: 262 NG-----KKQIVCTLDDVNLLGDHNYENILAAIAVTYSMGVPVSYIKEGIKRFKGVEHRI 316

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                          ++S   NP +    I  +++ +    G            G   +S
Sbjct: 317 ---EYVDTVKGVAYYNDSKGTNPDAAIKGIKAMNRPTWLIGG------------GYDKKS 361

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD 445
            + +  E      +  + L G     + D         + + ++M+    +I     DG+
Sbjct: 362 TYDEWIE-AFDGKVKELILMGVTAPKIADCAKTHGFDKIKFVDSMEEAVSYIAGKAQDGE 420

Query: 446 VVVV---KSS---------NSCGFYRLINLLLE 466
            V++    +S             F   +  L E
Sbjct: 421 AVLLSPACASWGMFPNYEVRGDIFKDCVRKLKE 453


>gi|330987132|gb|EGH85235.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 448

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 118/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   ET+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVTLVRVETVQAAVEQSARLAQRGDAVLL 420


>gi|330877135|gb|EGH11284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 448

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 119/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q           
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKFLAFQFDNLMPVSELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLRERNGVD---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG-LRAPVAQYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLIRVDTVQAAAERSAELAQHGDAVLL 420


>gi|254786999|ref|YP_003074428.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
 gi|259509791|sp|C5BP36|MURD_TERTT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|237684910|gb|ACR12174.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Teredinibacter
           turnerae T7901]
          Length = 453

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 134/409 (32%), Gaps = 50/409 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+        +L   +  V D+   L ++        +  ++ ITGS GK+T   ++   
Sbjct: 83  VDRRTDFIQAALKNNISIVGDIELFLREV--------QVPVVGITGSNGKSTVTALMAAV 134

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +              +IG+P  L  +  + +  I EL    L  +          +A +
Sbjct: 135 GAKAGFKTC----AAGNIGLP-VLDALQENAELYILELSSFQLESVSRPGL----TVACM 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++  H+  ++   +   AK  I+ G +       +           +   +       
Sbjct: 186 LNVSEDHMDRYNRFVDYCMAKQRIYFGAQNVVYNIDDK--------LTQPPIVDGVARRG 237

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F  SK  +     +   ++   +                G H   N+L    +   L   
Sbjct: 238 FSLSKPIEEGESAFYFSADTGNLCAAKDNLINIDQIKIFGRHNVANVLAVFAMADALNIT 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                 A+  F   + R    +    +   T I++S   N  + +AAI+ L         
Sbjct: 298 RAATCAAVQEFSGLDHRC---QWVAKKRGVTFINDSKATNVGAAQAAIAGL----SASFK 350

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R + + G     G+   +      +++   +++ + L G    A+ D +  +  V  ++T
Sbjct: 351 RILLIAG-----GDGKDANFFSFGKLVD-AHVAVLILMGRDAGAIADCVSDTTPVVQAQT 404

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
           M        SS  +GD+V++    +S             F   +  L E
Sbjct: 405 MTEAVEVAFSSAEEGDLVLLSPACASFDMFAGFEDRGRQFAAAVEGLTE 453


>gi|206971160|ref|ZP_03232111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218232675|ref|YP_002368712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus B4264]
 gi|228954189|ref|ZP_04116217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229071412|ref|ZP_04204634.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|229081165|ref|ZP_04213675.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|229152110|ref|ZP_04280305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|229180188|ref|ZP_04307532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|226711881|sp|B7H6P8|MURD_BACC4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206733932|gb|EDZ51103.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1134]
 gi|218160632|gb|ACK60624.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           B4264]
 gi|228603397|gb|EEK60874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           172560W]
 gi|228631459|gb|EEK88093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1550]
 gi|228702209|gb|EEL54685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-2]
 gi|228711703|gb|EEL63656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           F65185]
 gi|228805509|gb|EEM52100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 450

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|319778486|ref|YP_004129399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
 gi|317108510|gb|ADU91256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Taylorella
           equigenitalis MCE9]
          Length = 478

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 111/381 (29%), Gaps = 47/381 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDF 162
              +  II ITG+ GKTT   M+ +            G+ + + + V           D 
Sbjct: 117 NSKQIKIIGITGTNGKTTVTSMVRLMCEYAGLKSVEAGNISPSALTVVCEFEEKNSWPDV 176

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL  + L    ++        + I  I   H+     +E   ++K +IF   +    
Sbjct: 177 ISLELSSAQLFYTDYICLDA----STILNITQDHIDWHGSMEAYIASKKKIFSHSKIAVV 232

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                        + +    G+     +  S   + +    K+ +   W     +     
Sbjct: 233 D------------ENQFKEFGLSNALVYRDSLPINKEDIGIKEVNGMKWFCTTDKNLMPV 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N +  + +   +    +  + AL  +     R    R          I
Sbjct: 281 EAMKIRGNHNVLNAMAAMQLCRAIDLPFEPLLTALRDYEAHNHRCTYVRDIQGVN---FI 337

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  AAI  +           + +LG   + G+     +  L        + 
Sbjct: 338 DDSKGTNVGATVAAIDGM-------YRNLVVILGGEGK-GQDFTPLYESLRNRTKSNGLK 389

Query: 403 HVWLSGFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
            + L G     L             +I V    T+D   +        GD+V++    +S
Sbjct: 390 GIVLIGKDKNILSHYLNIKDFKFEETIPVVVVNTIDEAVVESFKLAQSGDLVLLSPACAS 449

Query: 453 ---------NSCGFYRLINLL 464
                        F   IN L
Sbjct: 450 IDMFKNYHERGVKFVEAINEL 470


>gi|261838027|gb|ACX97793.1| UDP-MurNac-pentapeptide synthetase [Helicobacter pylori 51]
          Length = 493

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|145630239|ref|ZP_01786021.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145641273|ref|ZP_01796853.1| D-alanine--D-alanine ligase [Haemophilus influenzae R3021]
 gi|144984520|gb|EDJ91943.1| N-acetylglucosaminyl transferase [Haemophilus influenzae R3021]
 gi|145274110|gb|EDK13976.1| D-alanine--D-alanine ligase [Haemophilus influenzae 22.4-21]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 146/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L I        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAIAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGEKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|313903440|ref|ZP_07836831.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466261|gb|EFR61784.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 549

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 110/394 (27%), Gaps = 49/394 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----IGSYNNHIGVPLTLARMP 157
              R +  ++ +TGS GKTTT  +L   L                   +IG PL      
Sbjct: 173 FLERCRGKVLGVTGSAGKTTTTTLLAEGLRQAAAPGGPLAGRPVFVGGNIGRPLIEEVDR 232

Query: 158 VDVDFGIF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  +  +  EL    L           P +AV   + P HL     +E  A+AKA I E 
Sbjct: 233 IPPEALVVLELSSFQLELCHRA-----PDVAVYLNLRPNHLDIHGTMEAYAAAKARIVEL 287

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-------QCSEQ 269
            E  G   LN D+     L  ++         S   ++    +    +         +  
Sbjct: 288 QEPDGWAVLNADEPAPAGLAGRAPGRVAAFAASARAARELAEREAARRGGPVRAAYLAGD 347

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +    QG+   +    +    A N L  L  +                     G   R
Sbjct: 348 RLVAWDGQGERPLLEAGAMHLRGAHNRLNALAAILAGWVAGADPAGMAQAAAAFRGVEHR 407

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                        ++S    P    AA+   ++      G            G       
Sbjct: 408 LEPVRELDGVWYYNDSIATAPDRTLAALEAFTEPVVLIAG------------GYDKGIPF 455

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLV 442
             L   L       V L G    A++  +  +         V    +++      +    
Sbjct: 456 DPLGPALCRRA-RAVVLLGRTAEAIQRVIEEAARQEGKAPLVRRVASLEEAVAEARRLAR 514

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            GDVV++    +S             F  L+  L
Sbjct: 515 PGDVVLLSPACASYDMFRDFAERGRRFKELVMAL 548


>gi|257483449|ref|ZP_05637490.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011575|gb|EGH91631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 448

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 118/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|326388916|ref|ZP_08210498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206516|gb|EGD57351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 452

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/425 (15%), Positives = 126/425 (29%), Gaps = 75/425 (17%)

Query: 66  GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117
             VVV+         + A   +  +PV G  D+     +L  A R       ++ ITG+ 
Sbjct: 66  AGVVVSPGVPLNRHPITAHAAAHGVPVIG--DI-----ELFAAIRPELPPHRVVGITGTN 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  ++                   +IG+P+            + EL    +     
Sbjct: 119 GKSTTTALVHHICREAGF----PARMGGNIGLPVLGEEALPAGGVYVLELSSYQID---- 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT+ +   +A +  I+P HL  + G    A++KA +F                       
Sbjct: 171 LTYSLEADVAALINISPDHLDRYDGFAGYAASKARLFAMQRPDQHAV------------- 217

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                       FG        +        ++    +     +             N+ 
Sbjct: 218 ------------FGTGDADTGAIADAVAHVREARFVHRPDPALLSGQADWPSLQGPHNLQ 265

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                V+I  A                G   R    +       +++S   NPAS   A+
Sbjct: 266 NAAIAVAIAEALGIAEAVWRPALASFVGLPHRMERVVEVDGVLFVNDSKATNPASTAPAL 325

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +   +I     G      GD  ++ + +  F           ++   +  G       + 
Sbjct: 326 AAYPRIHWICGGVPK---GD--DLDDCAPWF----------DHVVEAYTIGEAGPRFAEI 370

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           L   + V  SE +        ++   GDVV++    +S             F  ++  L+
Sbjct: 371 LRDHVPVRRSEMLCDAVRDAMAAAKPGDVVMLSPACASFDQFRDFEARGDAFREIVAALI 430

Query: 466 EEFPA 470
            +  A
Sbjct: 431 ADRDA 435


>gi|269795579|ref|YP_003315034.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
 gi|269097764|gb|ACZ22200.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sanguibacter keddieii DSM 10542]
          Length = 535

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 80/492 (16%), Positives = 155/492 (31%), Gaps = 53/492 (10%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           +  DL   +            V+G+ + S  + P + F A+ G    G  F   AV  GA
Sbjct: 17  SLGDLADTVAVTVDPAARGVLVSGVVLGSADVQPGDLFVAVPGARSHGARFTAAAVAAGA 76

Query: 66  GLVVVNTDMVASIGSLS--------IPVFGVD---DVLGALNKLAVAARLRSK--ATIIA 112
             V+ +T+ +A + S           PV  +    D   A    A           T   
Sbjct: 77  VAVLTDTEGLALLESTDEGLALVHGTPVVLLPQGSDPQRAAGSAASWFYDHPSAALTSFG 136

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM--------------PV 158
           +TG+ GKTTT  +L   L+++ +T   +G+     G  +  +R+                
Sbjct: 137 VTGTNGKTTTTYLLDHLLTALGRTVGLVGTVETRSGARVLPSRLTTPDAATLQGVLATMR 196

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +    +  + +S     +     +   +A  T ++  HL     ++   +AKAE+F    
Sbjct: 197 EDGVDVLAMEVSSHSISQRRIDGLHFDVAGFTNLSQDHLDFHGDLDRYFAAKAELFTAER 256

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +  D+    L           ++   G  ++           S  ++  V   G
Sbjct: 257 ARRGVVVVDDEWGRRLAATADIPTVTLSVEHSGGPQSDWTVRDVHAGASGSTFSVVHRDG 316

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +S+       G     N  + + +V     +V T   AL                ++   
Sbjct: 317 RSVRARTALPGSFNVANAALAIVMVVESGIEVGTVTAALEAAGGLSPAVPGRMEQVSDSP 376

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++N +          L+ + P   GR + V G   E      +    +   +++
Sbjct: 377 RVVVDFAHNPDA-----LALALAALRPTTAGRLVVVFGATGE----RDTTKRPVMGRIAV 427

Query: 399 YNISHVWLS-----GFHVLALK---------DALPRSIHVHYSET--MDGLFLFIQSSLV 442
                V ++     G     ++          A      V   E             +  
Sbjct: 428 EGADVVVVTDDDPHGEAADGIRAEVLAGAREAAAQPGCDVDVLEAAPRALAIRAAVLAAD 487

Query: 443 DGDVVVVKSSNS 454
           D D V+V     
Sbjct: 488 DEDTVLVAG-RG 498


>gi|325134887|gb|EGC57520.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M13399]
 gi|325144959|gb|EGC67242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis M01-240013]
          Length = 445

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 126/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++        G +  +   + +   +  R+  +  + +   +  Q   
Sbjct: 218 VLNS-------DDVFCRAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAIGLSREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +      + +      
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTPLRDALVGK------ 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T+        +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLGEAVQTAYAQAEAGDIVLL 418


>gi|208434651|ref|YP_002266317.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
 gi|208432580|gb|ACI27451.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori G27]
          Length = 470

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +  + +  I 
Sbjct: 144 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNNSEIYIA 203

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 204 EAGARNKGDIKEITLLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 258

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ +         
Sbjct: 259 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLIDSVWERFET 310

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +    P   R       L      +ID+S
Sbjct: 311 KVLGKFNAYNIASAILIAKHLGLETERIKRLVFELKPINHRL----QLLEVNQKIIIDDS 366

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S        + +         
Sbjct: 367 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 418

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 419 ITGELNSKTIASQLKTPQKILLKDKSQLENILQATTIQGDLILF 462


>gi|160945307|ref|ZP_02092533.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443038|gb|EDP20043.1| hypothetical protein FAEPRAM212_02826 [Faecalibacterium prausnitzii
           M21/2]
          Length = 467

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 121/385 (31%), Gaps = 51/385 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVD 159
                   I+A+TGS GKTTT  +++    +  +     G+        +P         
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAALLPMLPEVSPE---- 168

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P+IAV+T + P HL +   ++E  +AK  I    ++
Sbjct: 169 -DVAVVELSSFQL-----ISMHASPNIAVVTNVTPNHLDHHKDMQEYINAKRNILLYQKQ 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L Y++     ++A      +           A  +      C  +  +       
Sbjct: 223 PCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCMAEDGVVTPF--- 279

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +      +        L+           V+   +  S F   E R             
Sbjct: 280 -LAQKDVKLRGLHNIENLLAAAAAVWGEVPVEAIRQVGSTFTGVEHRI---EPVRTLDGV 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   +P    A +    +      G            G      +  LA  +   
Sbjct: 336 LYYNDSIGTSPTRTIAGLRSFDRKVILIAG------------GYDKHIPYEPLAPEII-A 382

Query: 400 NISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
           ++ ++ L G     ++ A+         ++ + +++ M       +++   GD++++  +
Sbjct: 383 HVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIILSPA 442

Query: 452 S-----------NSCGFYRLINLLL 465
           S               F +++N L 
Sbjct: 443 SASFDLYPNFEVRGREFKKIVNALK 467


>gi|53729118|ref|ZP_00134082.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207507|ref|YP_001052732.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae L20]
 gi|165975477|ref|YP_001651070.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250498|ref|ZP_07336695.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307244820|ref|ZP_07526919.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249218|ref|ZP_07531215.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251540|ref|ZP_07533447.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253774|ref|ZP_07535628.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256040|ref|ZP_07537828.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258231|ref|ZP_07539974.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260470|ref|ZP_07542165.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|166222951|sp|A3MY91|MURC_ACTP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706335|sp|B0BRH8|MURC_ACTPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126096299|gb|ABN73127.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875578|gb|ABY68626.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302650486|gb|EFL80645.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854265|gb|EFM86471.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306858742|gb|EFM90801.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306861004|gb|EFM93010.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863258|gb|EFM95198.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306865462|gb|EFM97357.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306867691|gb|EFM99536.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869873|gb|EFN01655.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/428 (17%), Positives = 148/428 (34%), Gaps = 48/428 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV ++ +  S   +       IPV        A   LA   R R     IA+ G+
Sbjct: 76  AGASVVVASSAIDDSNPEVRAAKEARIPVIQ-----RA-QMLAEIMRFRHG---IAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +  K     +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMISMIYTEAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++ +   +    L   G   +  DD     +
Sbjct: 184 -----LQPMVSVVTNIEPDHMDTYGGDFEQMKATYVKFLRNLPFYGLAVMCADDETVIEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +     +    ++G S+ AD+++  ++Q   +  +  V   G+ ++V+ +  G H A 
Sbjct: 239 APQVGRQVL----TYGFSEKADYRIEDYQQTGFQGHYTVVCPNGERIDVLLNVPGKHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP---- 350
           N    L +        +  + AL+ F     R  +    +      ++ + Y  +P    
Sbjct: 295 NATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVD 354

Query: 351 ------ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                  S      V+    PH   R   +  D  ++     +  +          I   
Sbjct: 355 VTIKAARSGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLEVYAAGEAPI--- 411

Query: 405 WLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              G    AL  ++     V        D L   +   + DGD+++ + + S    R+  
Sbjct: 412 --VGADSKALCRSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLILAQGAGSV--SRISR 467

Query: 463 LLLEEFPA 470
            L E + A
Sbjct: 468 GLAESWKA 475


>gi|223043731|ref|ZP_03613774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
 gi|222442828|gb|EEE48930.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           capitis SK14]
          Length = 449

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 129/410 (31%), Gaps = 56/410 (13%)

Query: 78  IGSLSIPV---FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           + +  IP       + V   L  L     + L S+A II +TG+ GKTT   ++      
Sbjct: 76  VKNPGIPYTVSIIDEAVRRGLKILTEVELSYLISEAPIIGVTGTNGKTTVTSLIGDMFKK 135

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              T    G+      V   +A+     ++ I EL    L  I       +PHIA+IT I
Sbjct: 136 SVLTGRLSGNIGY---VASKVAQEVKADEYLITELSSFQLLGIDEY----KPHIAIITNI 188

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AHL     +E   +AK +I++   +   +  NY     +    ++  L  KT+Y   +
Sbjct: 189 YSAHLDYHESLENYQNAKKQIYKNQTEDDYLICNYH----QRHLIETENLKSKTLYFSTQ 244

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +     ++          +            +           ++    V  +   + T
Sbjct: 245 QEVNGIYIKDGFIVFNGVRIINVKDLVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTT 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                       G   R +           ++S   N  + + A++  +Q      G   
Sbjct: 305 FS----------GIDHRLQYIGTHRTNKYYNDSKATNTLATQFALNSFTQPIIWLCG--- 351

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMD 431
                    G    +   +L   ++  N+  + + G            +  +V  +  ++
Sbjct: 352 ---------GLDRGNDFDELIPYMN--NVRVMIVFGETQEKFAKLGNSQGKYVIKATNVE 400

Query: 432 GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
                IQ  +   DVV++    +S               + I       P
Sbjct: 401 DAVDKIQDIIEPNDVVLLSPACASWDQYKTFEERG---EKFIERFRAHLP 447


>gi|295111740|emb|CBL28490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synergistetes
           bacterium SGP1]
          Length = 458

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 122/377 (32%), Gaps = 43/377 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            + +  +I +TGS GK+T   ++   L++  +  A  G+      V         + D  
Sbjct: 109 PQLRGRLIGVTGSNGKSTVTALIGHMLNAAHRNVAVGGNLGRAASV-----FAGREFDAV 163

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L+  V    +++T +AP HL+     E   +AKA+I      +G  
Sbjct: 164 VLELSSFQLEWTHTLSSCV----SIVTNLAPDHLNWHGSYEAYVAAKAKILSLRAPSGWG 219

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D           A G + + +    +     +       E+          +   
Sbjct: 220 IVQDRD------VEALKAGGEERVITLSWEERPKHGMAGHIFMGEEEATLRLNGEMTPLF 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            +       A N+      V+ L         A ++         R   A        +D
Sbjct: 274 RYSETTLLGAHNLENVAMSVAALRLLGLD-EDAKTLLKGFFPLPHRCERAGTVDGVLYVD 332

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N A+   A++ L        GR++ +LG     G      +  LAE + L     
Sbjct: 333 DSKGTNVAASVTAMTAL-------PGRKVVILG-----GRGKGEDYAALAEGV-LREADA 379

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK----------- 450
             L G    A+  AL  +    V  ++ M+      Q+    G  V++            
Sbjct: 380 AVLLGEERDAIAGALRGAGFTAVTLAQDMEDAVRKAQTLARPGMTVLLSPACTSWDMYEN 439

Query: 451 -SSNSCGFYRLINLLLE 466
                  F  ++  L E
Sbjct: 440 YGQRGDHFCSIVRGLQE 456


>gi|261493191|ref|ZP_05989720.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496953|ref|ZP_05993320.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307389|gb|EEY08725.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311154|gb|EEY12328.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 475

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 143/407 (35%), Gaps = 48/407 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV+T +  +   +       IPV        A   LA   R R     IAI G+
Sbjct: 76  AGASVVVVSTAIDETNPEIIAAREARIPVI-----RRA-EMLAEIMRFRHG---IAIAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+++  +  K     +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMISMIYTEAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++          L   G   +  DD     +
Sbjct: 184 -----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMCADDETVMEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +      + + ++G S+NAD+++  ++Q   ++ +  V   G+ ++V+ +  G H A 
Sbjct: 239 APRV----GRQVITYGFSENADYRIEDYQQTGFQEHYTVVCPSGERIDVLLNVPGMHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +        +  + AL+ F     R  +    +      ++ + Y  +P  + 
Sbjct: 295 NATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFIRPNGKIMLVDDYGHHPTEVD 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-------- 406
             I      S     R + +          ++    +  +VL    +  + L        
Sbjct: 355 VTIQAAR--SGWEGKRVVMIFQPHRY--SRTRDLFDEFVQVL--SKVDALILLDVYAAGE 408

Query: 407 ---SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
               G    AL  ++     V        D L   +   + DGD+++
Sbjct: 409 APIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQDGDLIL 455


>gi|158316860|ref|YP_001509368.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
 gi|158112265|gb|ABW14462.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EAN1pec]
          Length = 513

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 81/458 (17%), Positives = 146/458 (31%), Gaps = 46/458 (10%)

Query: 25  GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI-GSLSI 83
             + G++ DSR++ P + + A+ G H  G DF   AV  GA  V+ +    A++ G L++
Sbjct: 41  VVLTGVTHDSRAVLPGDLYAALPGAHVHGADFAAGAVAAGAVAVLTDPVGAAALSGRLAV 100

Query: 84  PVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV   DD    L   A        S  T++ +TG+ GKTTT  +L   L +   T   +G
Sbjct: 101 PVLVTDDPRRDLAPAAAWIYGDPSSALTLLGVTGTNGKTTTAFLLDAGLRAAGYTTGLLG 160

Query: 142 SYNNHI-GVPLTLARMPVDVDFGIFE-------------LGMSHLGEIRFLTHLVRPHIA 187
           +    + G  +   R   +                    + +S     +     +R   A
Sbjct: 161 TVQTRVAGTVVPSVRTTPESGDLQALLATMVERGVGAASMEVSSHALAQHRVDALRFAGA 220

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  HL     +E+  +AKA +FE   ++    +  DD +   L A          
Sbjct: 221 AFTNLSQDHLDFHPTMEDYFAAKAALFE-PARSAAAVVCVDDDWGRRLAALRPDAR---- 275

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++  +        +         +   L     +                   +  +  
Sbjct: 276 -TYSVTGRPADWWPEDVVAGPGGSVFRALGPDGAKADLSLALPGRFNVANALGALALLAA 334

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V     A  +       G+  R    Q F  L+D ++            +L+ + P  
Sbjct: 335 VGVPLEAAAEGISSLPGVPGRMERIDAGQPFLALVDYAHTPGAVET-----LLATVRPIV 389

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDL-AEVLSLYNISHVWLSG----FHVLALKDAL---- 418
            GR + VLG     G         L     +      V+ S          + + +    
Sbjct: 390 TGRVVVVLG----CGGDRDRAKRPLMGAAAARLADLAVFTSDNPRSEDPARILEQMLAGA 445

Query: 419 ---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              P +  +               +    D V+V  K 
Sbjct: 446 RGAPGAGEIVVEPDRASAIALAVGAAGPTDAVIVAGKG 483


>gi|255264765|ref|ZP_05344107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
 gi|255107100|gb|EET49774.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thalassiobium sp.
           R2A62]
          Length = 468

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 114/399 (28%), Gaps = 40/399 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPV-------FGVD-DVLGALNKLAVAARLRSK--ATIIAI 113
           G   ++V+  +       +  +         VD D+       A     R      ++A+
Sbjct: 66  GVSALIVSPGIPHLYPEPNKTIAAAWAAGVPVDNDIGLFFRSYATGDWDRFDVAPQVVAV 125

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GK+TT  ++   L+              +IG  +      +D +  + EL      
Sbjct: 126 TGSNGKSTTSALIHHILTE----VGRPTQLAGNIGRGVLDIDPAIDGEVVVLELSSYQTD 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-- 231
               L   + P IAV T ++P HL   +G+    +AK  +F        +    +     
Sbjct: 182 ----LARSLTPDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPERAVIGVDEVEGQY 237

Query: 232 -FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +        I  I    K +   + +   K    +     Q     +  +    G 
Sbjct: 238 LSNQMMDGMDPSRIIQISVDRKLQGPGWNIFARKGFLSEYRNGRQAGSIDLRDIIGLPGA 297

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  QN          L        +AL  F     R    +   +Q     +++S   N 
Sbjct: 298 HNHQNACAAYAACRSLGLAPKVIEQALHSFGGLPHRS---QQIADQDGVRYVNDSKATNV 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S   A++    I     G          E           L        +   ++ G  
Sbjct: 355 DSAAKALAAFKNIRWICGG---------LEKEGGLTGLKDQLGA------VRKAYVIGRE 399

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    L   +      T+             GD V++
Sbjct: 400 AASFARQL-EGVETQICTTIQEAVAAAYQDAEAGDTVLL 437


>gi|154250395|ref|YP_001411220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
 gi|171769434|sp|A7HNT0|MURD_FERNB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154154331|gb|ABS61563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fervidobacterium
           nodosum Rt17-B1]
          Length = 420

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 118/375 (31%), Gaps = 69/375 (18%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGI 164
            K  IIA+TGSVGK+TT  M+   +S            + + G+P+    +     ++ +
Sbjct: 100 WKPKIIAVTGSVGKSTTVAMINHLISKSAS-----SQISGNFGIPIAQVLLEGKKPEYIV 154

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L          +P++AVIT I P HL     +E    +K +I +  +      
Sbjct: 155 VEISSFQLYWT----PFFKPNVAVITNIYPNHLDWHPSMEHYVDSKFKITKFQDNEDHFV 210

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                                           D +  K     +   +   +  K  E+ 
Sbjct: 211 ----------------------------YNPKDMETFKRLALVQAKRVPFTVDFKFEEIP 242

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H       +N+     ++ +L      ++       P      R             ++
Sbjct: 243 FHIRTKQNMENIAAAKTVLKVLGLPFSMSMLEDFTPLP-----HRMEYCGTINGAHYYND 297

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N A++  A+                ++      G+     +  LA  +S      V
Sbjct: 298 SKATNAAAVVKALENFD-------NNLYLIIA-----GKGKNEDYSKLANEISK-KCKFV 344

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
            + G    A++  L  R+++      ++     I     +GD V++    +S        
Sbjct: 345 AIVGPISDAVEPYLKERNVNYKRFSNIEEAVFEISKMAKEGDYVLLGPAGASYDAYKNFE 404

Query: 453 -NSCGFYRLINLLLE 466
                F  ++  L++
Sbjct: 405 ERGNHFKEIVKKLMQ 419


>gi|83814772|ref|YP_444701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
 gi|122063258|sp|Q2S530|MURD_SALRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83756166|gb|ABC44279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           DSM 13855]
          Length = 460

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 128/445 (28%), Gaps = 60/445 (13%)

Query: 58  LHAVQKGAGLVVVNTDMVASIG-------SLSIPVF---------GVDDVLGA----LNK 97
             A   GA   +    +    G          + V           V   L A     ++
Sbjct: 39  QDAPSDGAAAALDEAGVEYEFGGHTAEALDADVLVLSPGVPTQSNIVQQALRAGLDVYSE 98

Query: 98  L-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-ACIGSYNNHIGVPLTLAR 155
           + A +      A I+AITG+ GKTTT  +      +              +IG P +   
Sbjct: 99  IEAASWF--CDAPIVAITGTNGKTTTTSLTGHVFRTAFADTLGREAIVAGNIGYPFSDYV 156

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
           +  +  D  + E+    L  +       RP ++V+  I P HL  +    E  A AK  I
Sbjct: 157 LETEPTDVVVLEVSSFQLDHVE----TFRPRVSVLLNITPDHLGRYDHDFEAYAQAKHNI 212

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    +   +  N DD        ++ A       +       +          +   + 
Sbjct: 213 FRNQGEGDVVVYNRDDDDVRNAAEEAAAEQGVRPMAI----TREGVPAAGAGFRDGRIVL 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    +      NM  +L                       EG   R    
Sbjct: 269 RTDDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVPHRLEEV 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   +++S   N  ++  A+    +      G            G    + + DL 
Sbjct: 329 HTVDDVLYVNDSKATNVNAVWYALESFDRPIVLIAG------------GRDKGNDYTDL- 375

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--- 449
           + L    +  V   G     ++  L      H  +ETM+      Q +   GDVV++   
Sbjct: 376 KPLVRDQVRAVVALGESAEKVERELGGEAPDHSRAETMEDALTQAQRAAQPGDVVLLSPA 435

Query: 450 KSS---------NSCGFYRLINLLL 465
            SS             F RL+  LL
Sbjct: 436 CSSFDMYENYEERGDTFRRLVETLL 460


>gi|20808074|ref|NP_623245.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479543|ref|ZP_05092860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
 gi|30316069|sp|Q8R9G4|MURD_THETN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|20516656|gb|AAM24849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034511|gb|EEB75268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 450

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 129/391 (32%), Gaps = 51/391 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  L ++ +A RL SKA I AITG+ GKTTT  +L     +  +          +IG PL
Sbjct: 93  LEILGEVELAYRL-SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVY----VAGNIGYPL 147

Query: 152 TLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             A +     D  + E+    L          RP I+ I  I P HL      E  A+ K
Sbjct: 148 IYAALEAGPNDHIVAEISSFQL----ETVKEFRPKISCIINITPDHLDRHKTFENYANIK 203

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             IFE   +   + LNYDD     LK ++ A              +  ++ +     ++ 
Sbjct: 204 GRIFENQREEEYVVLNYDDPVTWGLKERAKAKV---------FPFSRKKVLENGAYVKEG 254

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++ +Q +        +  G H  +N L    +  +   +VD     L  F   E R    
Sbjct: 255 FLYLQNKKVIKVEDIYIPGEHNLENALAASSVAYLSGIEVDAIETTLRTFKGVEHRI--- 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                       ++S   NP +   AI  L        G            G    S   
Sbjct: 312 EFVAEIEGIKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFD 359

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDV 446
           +  +      +  + L G     +K    +       +   ++++            GD 
Sbjct: 360 EFVKTFDK-KVRKLILIGQTAQKIKKTALKYSYPEEDIFLVDSLEEAVRKAYEVAEKGDS 418

Query: 447 VVV---KSS---------NSCGFYRLINLLL 465
           V++    +S             F + +  L 
Sbjct: 419 VLLSPACASWDMFKNFEERGKAFKKAVMDLR 449


>gi|170718781|ref|YP_001783964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           somnus 2336]
 gi|168826910|gb|ACA32281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus somnus
           2336]
          Length = 436

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IIAITGS GK+T   +++                  +IG+P     +  D D  + E
Sbjct: 105 NKPIIAITGSNGKSTVTTLVSEMAKE----DGLKVGIGGNIGIPALEL-LQQDYDLYVLE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ ++   A I  I+  H+  +  IE+   AK  I+E  +        
Sbjct: 160 LSSFQL----ETTYSLKATAATILNISEDHMDRYLDIEDYRQAKLRIYENCQ-------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +      L          +          K  + + ++  + +         
Sbjct: 208 ------RAVINAEDVLTTTEDLKSPITFGESQADYWLKTENGKQYLMAKERLILPCDEMK 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L    +V  +         AL  F     R    + A  +     I++S 
Sbjct: 262 LVGRHNYMNALAASALVQAVDISFTAIRTALRKFTGLAHRF---QLAYQKDDVRWINDSK 318

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S      V +    +   +   +LG   +  + S     +LA +++  +I + + 
Sbjct: 319 ATNVGST-----VAALTGLYVANKLHLLLGGDGKSADFS-----ELATLINQPHI-YCYC 367

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L      S+     +TM+     I+ +L  GD+V++
Sbjct: 368 FGQDGKELAAL---SVQSQLFDTMEQAIEAIRPNLQQGDMVLL 407


>gi|239826521|ref|YP_002949145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           sp. WCH70]
 gi|259509789|sp|C5D8M2|MURD_GEOSW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|239806814|gb|ACS23879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacillus sp.
           WCH70]
          Length = 451

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 124/392 (31%), Gaps = 47/392 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK---------LAVAARLRSKATIIAITGSVGK 119
           +++      + +  IP      V  A+ K         LA      S+A  I ITGS GK
Sbjct: 68  LLDEPFDLVVKNPGIPY-TNPMVKKAMEKGLPVVTEVELAYHI---SEAPFIGITGSNGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L              N       +A+     ++ + EL    L       
Sbjct: 124 TTTTTLIYEMLRE---GEKRPLLAGNIGTAACEVAKKAEASNWLVTELSSFQL----AGI 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP I+V+  I  AHL      E  A AKA IF+         +N DD     L    
Sbjct: 177 RDFRPRISVLLNIFDAHLDYHGTKEAYAQAKANIFKNQTNEDYAVINADDELVMQLAENI 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           HA  +    +         ++          ++    +           G H  +N+L  
Sbjct: 237 HAQKVAFSAT---------KVLGRGAYINNGFIYWNDEAVIAVADIVLPGKHNLENILAA 287

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  +  + L+ F   + R    +           ++S   N  +       
Sbjct: 288 VAVAKLAGVDNKSIYQVLTTFTGVKHRL---QYVATIDGRKFFNDSKATNILA------T 338

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S   +   I + G     G    +    L   L  +N+  V L G     +     
Sbjct: 339 QKALSAFEKDSVILLAG-----GLDRGNEFDALLPYL--HNVKAVVLFGQTAPKIARVAK 391

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++    + Y + ++            GDV+++
Sbjct: 392 QAGIETIEYVDNVEKAVPVAYQLSEPGDVILL 423


>gi|332362875|gb|EGJ40668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK49]
          Length = 459

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 130/346 (37%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIVGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I  L     P IAVIT + P HL     +E+ A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIEALH----PQIAVITNLMPTHLDYHGSLEDYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A    T+  F  ++  D          E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQA----TVMPFSTTEKVDG------AYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 385 VILGQSAPRVKRAADQAGVSYLDATDVQDAAHKAFAQAEPGDIVLL 430


>gi|331006871|ref|ZP_08330124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
 gi|330419322|gb|EGG93735.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium IMCC1989]
          Length = 454

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 119/359 (33%), Gaps = 36/359 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS  K+T   ++    ++       + +   ++GVP+         D  + EL 
Sbjct: 110 PVIAITGSNAKSTVTTLVGEMAAA----CGLLPAVGGNLGVPVLELLNNTLADVFVLELS 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++P  A +  ++  H+  ++ + E    K  I+   E          
Sbjct: 166 SFQL----ETTYSLKPVAATVLNVSHDHMDRYASLAEYHQVKQRIYRHAESIIINR---- 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKS---KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               + +  +        + SFG      + D +        ++ ++  +          
Sbjct: 218 ----QDVLTQPPLSKEANVISFGVDSAGNSPDMRSFGLLAQGDKLFLSHKFAPLLSTEDI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  L + S     ++  + AL  F   + R             T I++S
Sbjct: 274 QIKGRHNYANALAALALGSAAGFGMEGMLDALKTFKGLQHRC---EYIATVNDVTYINDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +    ++ +   S   E   + + G   +  + S              ++  + 
Sbjct: 331 KGTNVGAT---LAAIEGFSVKNEKNIVLIAGGDGKGADFSP------LVDAVNRSVKTLI 381

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--GFYR 459
           L G     L + L + +    +E++         +   GDVV++    +S     GF  
Sbjct: 382 LIGHDAEKLYNMLHQVVSCVKAESLIDAVKQASINAGKGDVVLLSPACASFDMFSGFEE 440


>gi|187930094|ref|YP_001900581.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
 gi|187726984|gb|ACD28149.1| UDP-N-acetylmuramate [Ralstonia pickettii 12J]
          Length = 461

 Score = 66.0 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 126/425 (29%), Gaps = 43/425 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I + + +G    ++   +  ++  +S P +  D+VL              +  ++A+ G+
Sbjct: 67  IGNVISRG--NALMEAILDRNLPYISGPQWLGDNVLR-------------QKWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ML   L                 GVP     +    + DF + E        
Sbjct: 112 HGKTTTTSMLAWILQDAGYNP-----GFLVGGVPRNFGLSARLTESDFFVIEADEYDTAF 166

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  A++  +   H   F  +  I +    +   +   G + +N  +   
Sbjct: 167 FDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLVNGREDSL 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + +  +     ++   + G     +          + S+  V        V     G H 
Sbjct: 227 KRVLERGCWSEVEQFGAEG-----NLGWEVENLADDDSFDVVFQGQTQGRVRWALQGDHN 281

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNAN 349
             N L  +     +      AI++L+ F   + R +      +      F     +    
Sbjct: 282 RMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVNDVTVYDDFAHHPTAIRTT 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              ++  +     ++          LG M      S S    +    +      +     
Sbjct: 342 IEGLRRRVGKGRILAVLEPRSNTMKLGVMKLALPDSLSGAEQIFAYGAANGRDAL----- 396

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
                    P          +  L   + ++   GD V+V  SN  GF     +L++ L 
Sbjct: 397 GWDLAGALAPLGERAKTFSDLSALIEAVTAAARPGDHVLV-MSNG-GFGGVHQKLLDALA 454

Query: 466 EEFPA 470
           E    
Sbjct: 455 ERAET 459


>gi|289677699|ref|ZP_06498589.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae FF5]
          Length = 448

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 120/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  ++G+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENSEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG-LRAPVAKYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+           + GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|304385172|ref|ZP_07367518.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
 gi|304329366|gb|EFL96586.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pediococcus
           acidilactici DSM 20284]
          Length = 464

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 133/411 (32%), Gaps = 59/411 (14%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            ++ +    ++P+        A  +LA        + +I +TGS GKTT   M+ + L  
Sbjct: 91  PVLVAAKEQNVPII-------AEPELA---YRVMDSELIGVTGSNGKTTVTTMIQLMLDQ 140

Query: 133 IKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                A +     +IGVP  T+ +     D  + EL    L  I      + PHIAV+  
Sbjct: 141 QDHHAAYVAG---NIGVPATTVVQKATANDRVVMELSSFMLAGID----QLHPHIAVVNN 193

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL      E   + K  I E   K     +N+D+  ++ L  ++ A  +       
Sbjct: 194 IFSNHLDWHKTRENYVNDKMRITENQTKDDYFVINWDNPEWQQLAQRTAAQVVPFSR--- 250

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                   L +    ++   +  + +           G    +N L  + +  I      
Sbjct: 251 ------QGLVENGAYAKDGQLYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANK 304

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L  F   + R +  +    +      ++S   +  + + A+    +      G  
Sbjct: 305 HIKQVLQTFSGVKHRIQYVKTLAGRQ---FYNDSKATDIEATQVALKAFQRPIILIAG-- 359

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-- 429
                     G      +  L   L   ++  V ++G     +++A   +  V   +   
Sbjct: 360 ----------GLDRGDDYTRLVADLKP-HVKEVIVNGQTAAHMQEAAQAAG-VKVVKDSP 407

Query: 430 -MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467
            +             GDV+++    +S             F   +  L +E
Sbjct: 408 RVKDSVAIAFEDSQPGDVILLSPAAASWDQYQTFEERGDEFITAVENLSKE 458


>gi|255692976|ref|ZP_05416651.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
 gi|260621289|gb|EEX44160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           finegoldii DSM 17565]
          Length = 444

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 74/373 (19%), Positives = 116/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGMNV----GLAGNIGKSLALQVAEDHHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +   AK         ++  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIKRELAKHGLKAHLYPFAAVKEDGAIAYVEDHEVKINEPIAFNMEQE-----EL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E L     S + 
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEI-EDLVREKCSALV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G H   L D   R  + V   +T M             G+ V++    +S        
Sbjct: 372 YMGLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGEQFKECVRAL 444


>gi|330813728|ref|YP_004357967.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486823|gb|AEA81228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 464

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/445 (12%), Positives = 135/445 (30%), Gaps = 43/445 (9%)

Query: 31  SIDSRSIAPQEAFFAIKGPHY--DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           S D+R++   E FF + G     DG D+   A++K    ++         G        V
Sbjct: 14  SADTRTLRKSEIFFDL-GSKSNKDG-DYFFKALKKKPLFIITQNQKRNLSGKN---FIIV 68

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            ++     K       +     IA+TG+ GKT+        L+ +      IG+      
Sbjct: 69  KNIYSFYVKSISLKFKKKPKYKIAVTGTNGKTSVAFFYYKILNLLGIKVGSIGTLGVFEN 128

Query: 149 VPLTLARM-----PVDVDFGIFE---------LGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              +   +       +                +  S  G  +     +     + T +  
Sbjct: 129 TKKSKGNLTTPDFFSNHKNLNHFYKKRINHSIIEASSHGLKQNRLEKINFDCGIFTNLTH 188

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +++  ++K  +F+ L K     +   +     L  K        + S+G+  
Sbjct: 189 DHLDYHRTMKDYLNSKLILFKKLIKKNGFLVTGSEVLEFSLLNKISKNKKLNLLSYGRKG 248

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           N   ++   K   + + +++ + GK   +    IG    +N L             +   
Sbjct: 249 NI-IKIISSKPNGQFTKLKINILGKVHTLKLKLIGNFQIENFLAATLACYSSGISFEKI- 306

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
               +    +    R +    Q    +ID ++  +          + +I      +   V
Sbjct: 307 --FRICSRIDNPPGRLQLFKKQNKTVIIDYAHTPDALE-----KTIIEIQKFFNKKINIV 359

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI-HVHYSE 428
            G     G             ++    + ++++       +   ++  +     +     
Sbjct: 360 FG----CGGDRDHQKRKAMGKIAYKLCNKIYITDDNPRYENARKIRMQIKAGCPNAIVVP 415

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
           +         S L + +++++  K 
Sbjct: 416 SRKQAIKSSISMLNE-EILLIAGKG 439


>gi|295105488|emb|CBL03032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 467

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 51/385 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVD 159
                   I+A+TGS GKTTT  +++    +  +     G+        +P         
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAALLPMLPEVSPE---- 168

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P+IAV+T + P HL +   ++E   AK  I    ++
Sbjct: 169 -DVAVVELSSFQL-----ISMHASPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQ 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L Y++     ++A      +           A  +      C  +  +       
Sbjct: 223 PCRAVLGYENEISRSMQADCKGKQVWFTRLHDTDNGAFLRKEDGMLCMAEDGVVTPF--- 279

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +      +        L+           V+   +  S F   E R             
Sbjct: 280 -LAQKDVKLRGLHNIENLLAAAAAVWGEVPVEAIRQVGSTFTGVEHRI---EPVRTLDGV 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   +P    A +    +      G            G      +  LA  +   
Sbjct: 336 LYYNDSIGTSPTRTIAGLRSFDRKVILIAG------------GYDKHIPYEPLAPEII-A 382

Query: 400 NISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
           ++ ++ L G     ++ A+         ++ + +++ M       +++   GD++++  +
Sbjct: 383 HVKNLVLMGATGPRIEQAVRECSGFDEAALPIQHADNMQHAVELARAAAKPGDIIILSPA 442

Query: 452 S-----------NSCGFYRLINLLL 465
           S               F +++N L 
Sbjct: 443 SASFDLYPNFEVRGREFKKIVNALK 467


>gi|270291458|ref|ZP_06197680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
 gi|270280304|gb|EFA26140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pediococcus
           acidilactici 7_4]
          Length = 464

 Score = 65.7 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 133/411 (32%), Gaps = 59/411 (14%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            ++ +    ++P+        A  +LA        + +I +TGS GKTT   M+ + L  
Sbjct: 91  PVLVAAKEQNVPII-------AEPELA---YRVMDSELIGVTGSNGKTTVTTMIQLMLDQ 140

Query: 133 IKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                A +     +IGVP  T+ +     D  + EL    L  I      + PHIAV+  
Sbjct: 141 QDHHAAYVAG---NIGVPATTVVQKATANDRVVMELSSFMLAGID----QLHPHIAVVNN 193

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL      E   + K  I E   K     +N+D+  ++ L  ++ A  +       
Sbjct: 194 IFSNHLDWHKTRENYVNDKMRITENQTKDDYFVINWDNPEWQQLAQRTAAQVVPFSR--- 250

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
                   L +    ++   +  + +           G    +N L  + +  I      
Sbjct: 251 ------QGLVENGAYAKDGQLYFKNERIMAADEIGVPGDQNVENALAAIAVAKIEGVANK 304

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + L  F   + R +  +    +      ++S   +  + + A+    +      G  
Sbjct: 305 HIKQVLQTFSGVKHRIQYVKTLAGRQ---FYNDSKATDIEATQVALKAFQRPIILIAG-- 359

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-- 429
                     G      +  L   L   ++  V ++G     +++A   +  V   +   
Sbjct: 360 ----------GLDRGDDYTRLVADLKP-HVKEVIVNGQTAAHMQEAAQAAG-VKVVKDSP 407

Query: 430 -MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEE 467
            +             GDV+++    +S             F   +  L +E
Sbjct: 408 RVKDSVAIAFEDSQPGDVILLSPAAASWDQYQTFEERGDEFITAVENLSKE 458


>gi|229192082|ref|ZP_04319051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
 gi|228591408|gb|EEK49258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10876]
          Length = 450

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQGAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKDGDVVLL 422


>gi|328952332|ref|YP_004369666.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452656|gb|AEB08485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 467

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 122/354 (34%), Gaps = 33/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLAR 155
           ++A     R    + AI+G+ GKTTT  ++   L +  K          +IG P + L  
Sbjct: 107 EVAGWHLKR---PVAAISGTNGKTTTTTLVGKMLLASGKR----PLVGGNIGTPLVDLLS 159

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              + D  I E+    L          RP  A +  I+  HL  +   +  A +KA +F 
Sbjct: 160 QQAEADCIILEVSSFQLDTA----PSFRPRAAALLNISEDHLDRYPDFQAYARSKAGLFR 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               + T  LN DD     L  +  +           +  A       + C  +      
Sbjct: 216 RQGPSETAVLNADDPKAAALADQVQSQVYLFSTRKKLTFGAWQAGESLRVCLARG----- 270

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + K         G H  +N++  L +   + A      +AL+ F     R        N
Sbjct: 271 PEAKFPLNKIVLPGRHNLENIMAALLLALEMGATPQGCAEALARFKGLPHRL---EWVAN 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G     D+S   N  ++  ++        H +   + + G   + G+     +  L+ +
Sbjct: 328 IGGVDFYDDSKGTNVGAVVRSLE-------HFDRPVVLIAGGRDKGGD-----YRPLSAL 375

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    +  V L G     +  AL  +  +  +  M        ++   G+VV++
Sbjct: 376 LRQR-VKKVILLGEAQDKIAAALSGAALMQPAADMAQAVELAYAAASSGEVVLL 428


>gi|326795772|ref|YP_004313592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
 gi|326546536|gb|ADZ91756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas
           mediterranea MMB-1]
          Length = 449

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 125/375 (33%), Gaps = 40/375 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A  IAITGS  K+T   ++   L S             +IG P     +  + D
Sbjct: 103 FAEYVDAPFIAITGSNAKSTVTTLVEYLLKS----IGKAAIAGGNIGRPALDT-LSQEAD 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      TH ++  +A +  ++  H+  +  +     AK  I+ G +   
Sbjct: 158 YYVLELSSFQL----ETTHALKADVACMLNVSEDHMDRYDDLYSYQRAKQRIYRGCKSA- 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               N  D     L ++   +   T  S       D +        +  W+   ++    
Sbjct: 213 --VCNKQDILTAPLLSQDTPVRAFTTGS------PDLKEFGLLPDDKGVWLSKGVKPLYH 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N+L  L I+ +L  D++    A  ++   +G   R          T 
Sbjct: 265 SSEIALKGTHNLANVLAALSILDLLGVDIELPAVAQGLYEF-KGLPHRCETVAVVNGVTY 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +  AA++ L  +        I + G     GE   +    L++ +  Y +
Sbjct: 324 INDSKGTNVGATLAALNGLGDLKRQN---IILIAG-----GEGKDADFSPLSQPIDKY-V 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV----------KS 451
               L G     +  ++           +       +S   +GD+V++          K 
Sbjct: 375 KRTILFGKDADLISTSISDVSVYSLVGDLSEAVALAKSDAKEGDIVLLSPACASFDMYKG 434

Query: 452 --SNSCGFYRLINLL 464
             +    F  L+  L
Sbjct: 435 FEARGEHFVELVKAL 449


>gi|171316202|ref|ZP_02905425.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
 gi|171098616|gb|EDT43413.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MEX-5]
          Length = 512

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 77/478 (16%), Positives = 152/478 (31%), Gaps = 47/478 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F    G   DG D   FI  AV  G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLQAGDVFL---GYAVDGADNRAFIADAVAGG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ +    V  +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAMPVA-LAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIK------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
            + +  AL+++                  + +       P     +    + G   + M 
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLNEAGAKAVAME 184

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN- 226
             SH      +       IAV T +   HL      +   +AKA++F        +    
Sbjct: 185 VSSHALHQGRVNGTA-FDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRAAVVNRD 243

Query: 227 --YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   E L  +   +      + G   + +      +  +  +   ++       V 
Sbjct: 244 DAAGCRLLEKLAGRVRTIAYGIGDAQGPDADRELVALDVRATATGTAFRLRSSWGDAHVE 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  LG +       D A+  ++      GR +R    L      ++ +
Sbjct: 304 VGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVID 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L  I+    GR + + G     G    +    L   ++      V
Sbjct: 364 -YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLADEV 418

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +    H    E      L      V  DVVV+  K 
Sbjct: 419 VVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAVREDVVVLAGKG 476


>gi|153940305|ref|YP_001392870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum F str. Langeland]
 gi|166224760|sp|A7GJB0|MURD_CLOBL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152936201|gb|ABS41699.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum F str. Langeland]
          Length = 458

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 115/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     +  ++ ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNEM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNIAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNRL 458


>gi|242373469|ref|ZP_04819043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
 gi|242348832|gb|EES40434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus epidermidis M23864:W1]
          Length = 449

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 129/410 (31%), Gaps = 56/410 (13%)

Query: 78  IGSLSIPV---FGVDDVLGALNKL--AVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           + +  IP       + V   L  L     + L S+A IIA+TG+ GKTT   ++      
Sbjct: 76  VKNPGIPYTVSIIDEAVRRGLKILTEVELSYLISEAPIIAVTGTNGKTTVTSLIGDMFKK 135

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              T    G+      V   +A+     ++ I EL    L  I       +PHIA+IT I
Sbjct: 136 SVLTGRLSGNIGY---VASKVAQEARPDEYLITELSSFQLLGIEKY----KPHIAIITNI 188

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
             AHL     +E   +AK +I++   K   +  NY     +    +S  L  KT+Y   +
Sbjct: 189 YSAHLDYHETLENYQNAKKQIYKNQTKDDYLICNYH----QRHLIESENLKAKTMYFSTQ 244

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +     ++          +            +           ++    V  +   + T
Sbjct: 245 QEVDGIYIKDGFIVYNGIRIINVKDLVLPGEHNLENILAAVLAAILAGVPVKAIVDSLTT 304

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                       G   R +           ++S   N  + + A++   Q      G   
Sbjct: 305 FS----------GIDHRLQYIGTNRTNKYYNDSKATNTLATQFALNSFKQPIIWLCG--- 351

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMD 431
                    G    +   +L   ++  N+  + + G            +  +V  +  ++
Sbjct: 352 ---------GLDRGNDFDELIPYMN--NVRIMVVFGETQEKFAKLGNSQGKYVIKATDVE 400

Query: 432 GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
                IQ  +   DVV++    +S               + I       P
Sbjct: 401 DAVDKIQEVIEPNDVVLLSPACASWDQYNTFEERG---EKFIERFRAHLP 447


>gi|145637113|ref|ZP_01792776.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
 gi|145269767|gb|EDK09707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           influenzae PittHH]
          Length = 437

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            I+ ITGS GK+T   ++     +             +IG+P     +  D +  + EL 
Sbjct: 106 PIVGITGSNGKSTVTTLVYEMAKAAGVKVGMG----GNIGIPALSL-LNEDCELYVLELS 160

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++   A +  +   H+  +  +E+   AK  I+   +       +  
Sbjct: 161 SFQL----ETTYSLKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYHNAKVGVLNNEDRL 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                  +AK      +    +             K  + + ++ V+ +          +
Sbjct: 217 TFGENENQAKHTVSFAENSADYWL-----------KTENGKQYLMVKDEVILPCEEATLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N+L  + +   +  ++D+   AL  F   + R    +          I++S   
Sbjct: 266 GRHNYMNILAAIALAQAIGINLDSIRTALRHFKGLDHRF---QLVHQANGIRWINDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG+   +LG   +  + S     +LAE+++  +I   +  G
Sbjct: 323 NVGST-----VAALAGLYIEGKLHLLLGGDGKGADFS-----ELAELINQPHI-ICYCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   +  ETM     F++ +L  GD+V++
Sbjct: 372 RDGALLAKFSSQS---YLFETMKQAIEFLRPTLQSGDMVLL 409


>gi|325578820|ref|ZP_08148867.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325159644|gb|EGC71776.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 475

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 85/484 (17%), Positives = 166/484 (34%), Gaps = 65/484 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHDFILHAVQ-KGAGL 67
           + + +      I      +G+    R        F         GH     A   +GA +
Sbjct: 34  IAEILLNEGYDISGSDIADGVVTQ-RLAQAGAKIFI--------GH----QAENVQGASV 80

Query: 68  VVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VVV++ +      L       IPV        A   LA   R R     IA+ G+ GKTT
Sbjct: 81  VVVSSAIHEDNPELIAAKQNRIPVIQ-----RA-QMLAEIMRFRHG---IAVAGTHGKTT 131

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+++  +  K     +                     + I E   S    +      
Sbjct: 132 TTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH----- 183

Query: 182 VRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P ++V+T I P H+  +    E++ +   +    L   G   +  DD+    L  +  
Sbjct: 184 LQPMVSVVTNIEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDTVLMELVPQVG 243

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              +    ++G S++AD+ +  ++Q   +  +  V   G+ + V+ +  G H A N    
Sbjct: 244 RQVL----TYGFSEHADYHIEDYEQTGFQGHYTVVCPSGERINVLLNVPGKHNALNATAA 299

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L +        +  ++AL+ F     R  +    +       + + Y  +P  +   I  
Sbjct: 300 LAVAKEEGIGNEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKA 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSG 408
               +  G G +  V+         ++    D  +VLS   +  +            + G
Sbjct: 360 ----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQ--VDALIMLDVYAAGETPIVG 413

Query: 409 FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               AL  ++     V        + L   +   + DGD+++ + + S    ++   L E
Sbjct: 414 ADSKALCRSIRNLGKVDPILVSDTEQLGDVLDQIIQDGDLILAQGAGSV--SKISRGLAE 471

Query: 467 EFPA 470
            + A
Sbjct: 472 CWKA 475


>gi|34499797|ref|NP_904012.1| UDP-N-acetylmuramate--L-alanine ligase [Chromobacterium violaceum
           ATCC 12472]
 gi|44888169|sp|Q7NQ00|MURC_CHRVO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|34105647|gb|AAQ62001.1| UDP-N-acetylmuramate-alanine ligase [Chromobacterium violaceum ATCC
           12472]
          Length = 464

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 88/463 (19%), Positives = 155/463 (33%), Gaps = 64/463 (13%)

Query: 10  LLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHYDGHD--FILHAVQKGAG 66
           + + + G    +      +G +   R  A     FF        GHD  ++      GA 
Sbjct: 21  IAEVLHGLGYTVSGSDMADGATTK-RLAAEGVRVFF--------GHDATYVE-----GAD 66

Query: 67  LVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +VV +T + A            IPV         +  LA   R +     IAI G+ GKT
Sbjct: 67  VVVTSTAVKADNPEVLAARDKRIPVI----PRALM--LAELMRFKQG---IAIAGTHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +    L +       +                  +   G+ E  ++   E      
Sbjct: 118 TTTSLTASVLGAAGLDPTFVIGGKL--------TAAGTNAKLGLGEFLVAEADESDASFL 169

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P +AV+T I   H+  +    +++  A  +  + +   G   L  DD     ++ + 
Sbjct: 170 HLTPVMAVVTNIDADHMDTYDHSFDKLKQAFVDFLQRMPFYGRAVLCVDDPNVREIRERV 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEVVHHGIGYHMAQNM 296
                    ++G   +AD      +  + Q   +V ++        +V +  G H   N 
Sbjct: 230 TKPVT----TYGLDDSADIYAENVRAAAGQMHFDVVVKNGAITRFPLVLNLPGRHNVLNA 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNANPASMKA 355
           L  + I     A ++   K LS F     R +RY     Q   +    + Y  +P  M A
Sbjct: 286 LSAIAIGLECGASIEAIQKGLSEFAGVGRRFQRYGEVKAQDGGSFTLIDDYGHHPVEMAA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGF--- 409
            ++ +    P        +L         ++    D  +VL       +S V+ +G    
Sbjct: 346 TLAAVRGAFPDR----RLLLAFQPHRYTRTRDLFEDFVKVLSGVDALLLSEVYAAGEAPI 401

Query: 410 ---HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                 AL  A+     V   + E +  +   I  +  DGDVV
Sbjct: 402 VAADGRALARAVRVGGKVEPLFVEDIADMPQAILDAARDGDVV 444


>gi|317180502|dbj|BAJ58288.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F32]
          Length = 493

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAVLIAKHLGLETERIKRLVWELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|282866568|ref|ZP_06275611.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
 gi|282558615|gb|EFB64174.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces sp. ACTE]
          Length = 464

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 147/423 (34%), Gaps = 46/423 (10%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ +      L      S+PV    D L AL
Sbjct: 49  ALRALGATVHIGH--AAGHLADDASCVVVSSAIRPDNPELVRAAELSVPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +             IA+ G+ GKTTT  ML +ALS +    +     +           
Sbjct: 107 ME---------GLRAIAVAGTHGKTTTTSMLAVALSGLGLDPSYAIGGDLEG---PGTNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E   S     +++     P +A++  +   H +N++ ++EI  +      
Sbjct: 155 AHGGGDIFVAEADESDRSFQKYV-----PQVAIVLNVELDHHANYASMDEIYESFETFTG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L  +        + ++G+++ AD ++ K       S + V 
Sbjct: 210 KVVPGGTLVVSADQQGAVELTRRVRGQDGLQVVTYGEAEGADVRVHKITPRGLTSEVTVV 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L GK +       G H A N +  L     L         A+  +   + R +       
Sbjct: 270 LGGKYLTFTVSVPGRHYALNAVAALAAGVALGVPAHNLASAIGTYTGVKRRLQ----LKG 325

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +     +     G R+ V+     +   +Q    ++ + 
Sbjct: 326 EAAGVQVIDSYAHHPTEMAADLEA---MRGAAAGSRLLVVFQPH-LFSRTQELGTEMGQA 381

Query: 396 LSLYNISHVWLS---------GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + DA       V        +   +      GD
Sbjct: 382 LALADASLVLDIYPAREDPIPGITSELIIDAAKTAGADVTAVHDKARIPAAVAGMAKPGD 441

Query: 446 VVV 448
           +V+
Sbjct: 442 LVL 444


>gi|229846170|ref|ZP_04466282.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
 gi|229811174|gb|EEP46891.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus influenzae
           7P49H1]
          Length = 475

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 147/416 (35%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVASKQKRIPVIQ-----RA-QMLAEIMRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  M+++  +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T + P H+  +    E++ +   +    L   G   + 
Sbjct: 175 DESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + ++ 
Sbjct: 230 ADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINILL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V+         ++    D  +VLSL  +  + 
Sbjct: 346 YGHHPTEVDVTIKA----AREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSL--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 MLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|317121201|ref|YP_004101204.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591181|gb|ADU50477.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermaerobacter
           marianensis DSM 12885]
          Length = 564

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 109/394 (27%), Gaps = 49/394 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT----YACIGSYNNHIGVPLTLARMP 157
              R +A +I +TGS GKTTT  ++   L                   +IG PL      
Sbjct: 188 FLERCRAKVIGVTGSAGKTTTTSLIGEGLRRATAPGGPLEGRPVYVGGNIGRPLIEEVDR 247

Query: 158 VDVDFGIF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  +  +  EL    L           P +AV   + P HL     +E  A+AK+ I   
Sbjct: 248 IPPEALVVLELSSFQLELCHRA-----PQVAVYLNLRPNHLDVHGSMEAYAAAKSRIVAL 302

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-------QCSEQ 269
               G   LN DD     L  ++         S   ++    Q    +         + +
Sbjct: 303 QAAEGWAVLNGDDPAPAGLAPRAPGRVAIFAASARVARQLAEQEAGRRGGPVRAAYLAGE 362

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                  Q +   +    +    A N L  L  +                     G   R
Sbjct: 363 HLAVWDGQEERCVLDGRAMVLRGAHNRLNALAAILAGWVAGAPPEAMAEAAAAFRGVEHR 422

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                        ++S    P    AA+   ++      G            G       
Sbjct: 423 LELVREVDGVRYYNDSIATAPDRTLAALEAFTEPVVLIAG------------GYDKGIPF 470

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALK----DALPRSIH---VHYSETMDGLFLFIQSSLV 442
             L   +       V L G    A++    +A  R      V    +++      +    
Sbjct: 471 DPLGPAVCRRA-RAVVLLGKTAGAIQRVIEEAAAREGRRPVVRRVGSLEEAVAEARRLAR 529

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            GDVV++    +S             F  L+  L
Sbjct: 530 PGDVVLLSPACASYDMFRDYVERGQRFKELVRAL 563


>gi|29337227|sp|P94335|MURC_CORGL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 486

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 143/414 (34%), Gaps = 37/414 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 91  DNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSMSVVAM 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +        +   +   G  E+ ++   E        +P++AV+T
Sbjct: 142 QAAGMDPSFAIGGQLN--------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS- 249
            + P HL  F   E       +    +   G + +  +D     L  +S   GIKT+   
Sbjct: 194 NVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYG 253

Query: 250 ------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       A   +   +  +E +   + + G+ + V+    G HM  N    L   
Sbjct: 254 TADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAG 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++  DVD  ++ LS F     R + +       F         A+  +   A+   ++ 
Sbjct: 314 YLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAART 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLAL 414
                G+   ++     +   +  F  + AE LSL + + V          + G     +
Sbjct: 374 RVKAAGKGRVIVAFQPHLYSRTIEFQKEFAEALSLADAAVVLEIYGAREQPVDGVSSEII 433

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            DA+  +I V Y      +   I       D+V+   + S       +++ L  
Sbjct: 434 TDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQLQN 485


>gi|154505722|ref|ZP_02042460.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
 gi|153794019|gb|EDN76439.1| hypothetical protein RUMGNA_03262 [Ruminococcus gnavus ATCC 29149]
          Length = 452

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 88/324 (27%), Gaps = 40/324 (12%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R   D    + E+    L       H   P ++ I  I P HL+    +E    AK +I 
Sbjct: 155 RETKDDSVIVAEMSSFQL----ETIHTFCPKVSAILNITPDHLNRHHTMEAYIEAKEQIA 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +   +     LNY+D        +  A  I         K    +      C E      
Sbjct: 211 KNQTEEDVCVLNYEDDVTRKFGERVKAQVIYFSSRRRLEKGIYLEDGNIIYCRENPEKVC 270

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            +    +  +H+      A  M     +   +         A+                 
Sbjct: 271 HVDELKLLGMHNYENVMAAVAMAAAYHVPMEIIRKTIREFTAVEHR---------IEFVA 321

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +      ++S   NP +    I  +++ +    G            G    S + +  +
Sbjct: 322 EKNGVAYYNDSKGTNPDAAIKGIQAMNRPTFLIGG------------GYDKDSSYDEWIQ 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
                 +  + L G     + +   R        ++T +            GD V++   
Sbjct: 370 SFD-GKVKKLVLLGATKEKINETAKRLGFTDTILADTFEEAVNICVEQAEPGDAVLLSPA 428

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F  L+N L
Sbjct: 429 CASWGMFKNYEERGDKFKELVNQL 452


>gi|317014152|gb|ADU81588.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori
           Gambia94/24]
          Length = 493

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 130/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLHQILQTQFNAHASPKSVNTLLGIANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +    + T  S          +R  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSLLTDVSSL--------VRNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLDLNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHQGRKVIVTPGLVESNTESNE---ALAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|56419653|ref|YP_146971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           kaustophilus HTA426]
 gi|62900465|sp|Q5L0X7|MURD_GEOKA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56379495|dbj|BAD75403.1| UDP-N-acetylmuramoylalanine D-glutamate ligase (D-glutamic acid
           adding enzyme) [Geobacillus kaustophilus HTA426]
          Length = 451

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 124/392 (31%), Gaps = 47/392 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK---------LAVAARLRSKATIIAITGSVGK 119
           +++      + +  IP      V  AL K         LA      S+ + I ITGS GK
Sbjct: 68  LLDEPFDLVVKNPGIPY-TNPMVKKALEKGLPVVTEVELAYHI---SEGSFIGITGSNGK 123

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L +  +     G+      V   +AR      + + EL    L  I    
Sbjct: 124 TTTTTLIYEMLKADGQDPLLAGNIGL---VACEVAREAKPGQWLVTELSSFQLAGIDKF- 179

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP IAV+  I  AHL      E  A+AKA IF    +     +N DD     + +  
Sbjct: 180 ---RPAIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTERDYAVVNADDPLVMNIASSV 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +  +   +S  K       ++                     +    I      N+   
Sbjct: 237 RSQKVL--FSATKLLGEGAYVQDGAIYWNG----------DPVIRIADIVLPGQHNLENI 284

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L  V+       +      V     G   R +           ++S   N  + + A+S 
Sbjct: 285 LAAVAAAKLAGASDEAIRQVLATFSGVKHRLQYVAEIDGRRFYNDSKATNILATQKALSA 344

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
            +       G  + +L      G    +   DL   L    +  V L G     +     
Sbjct: 345 FA-------GEPVILLAG----GLDRGNEFDDLLPYLQQ--VKAVVLFGQTADKIGRIAQ 391

Query: 420 RSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++    + Y + ++            GDV+++
Sbjct: 392 KAGIETIRYVDNVEKAVPVAFELSEPGDVILL 423


>gi|312863272|ref|ZP_07723510.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
 gi|311100808|gb|EFQ59013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           vestibularis F0396]
          Length = 450

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +   +   + D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----HGGKSGVLSGNIGFPASEVAQSVTNQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      E   +AK  I   +     + 
Sbjct: 166 MELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSDDFVI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  +++A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATQTNAQVVP----FSTVEKVDG------AYLENGGLYFKGELVMHADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  + +       + LS F   + R    +           ++
Sbjct: 272 LGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRL---QFVDTIDNVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELIPDI--TGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   H  ++ +             GDVV++    +S        
Sbjct: 376 VILGESAPRVKRAADKAGVTHLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFITTVERLK 449


>gi|239928208|ref|ZP_04685161.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291436539|ref|ZP_06575929.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
 gi|291339434|gb|EFE66390.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces ghanaensis ATCC
           14672]
          Length = 462

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 141/400 (35%), Gaps = 43/400 (10%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VVV++ +      L       IPV    D L AL               IA+ G+ G
Sbjct: 70  ASCVVVSSAIREDNPELRRAAELGIPVVHRSDALAALMD---------GLRPIAVAGTHG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML ++L+++ +  +     +           +  + +  + E   S     ++ 
Sbjct: 121 KTTTTSMLAVSLAALGRRPSYAIGGDLD---APGSNALHGEGEIFVAEADESDRSFHKYA 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P +A+I  +   H +N++ +EEI  +       +   GT+ ++ D      L  +
Sbjct: 178 -----PEVAIILNVELDHHANYASMEEIHQSFETFVGRIVPGGTLVISADHEGARELTRR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G     ++G++++AD ++        +S + V+L G  +       G H A N + 
Sbjct: 233 LD--GAVRTVTYGEAEDADVRVLSVVPQGLKSEVTVELDGAPLTFTVSVPGRHYAHNAVA 290

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L   + L         AL+ +   + R +       +     + +SY  +P  M A + 
Sbjct: 291 ALAAGAALGVPPAELAPALAAYTGVKRRLQ----LKGEAAGVQVVDSYAHHPTEMTADLE 346

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
            +        G    ++     +   ++    ++   L+L + S V            G 
Sbjct: 347 AM----RAAAGDSRILVVFQPHLFSRTRELGKEMGRALALADASLVLDVYPAREDPIPGV 402

Query: 410 HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               + +A       V        +   +      GD+V+
Sbjct: 403 TSELIIEAARAAGADVSAVHDEAEVPEAVAGMAKPGDLVL 442


>gi|306832975|ref|ZP_07466107.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
 gi|304424874|gb|EFM28008.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           bovis ATCC 700338]
          Length = 452

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 86  DNPMVARAIEKNIPVI-------TEVELAYMI---SAAPIIGITGSNGKTTTTTMIAETL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L           PHIA+I
Sbjct: 136 NN----GGKSGLLSGNIGFPASEVAQTATDKDILVMELSSFQLMGTD----TFHPHIAII 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I + +     + LN++    + L  K+ A  +    +
Sbjct: 188 TNLMPTHIDYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTAAQVVPFSTT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ +  +    
Sbjct: 248 ----------KKVDGAYLDGDTLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIA 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 298 NDAIKETLTHFGGVKHRL---QALGEINGVKFYNDSKSTNILA------TQKALSGFDNS 348

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  + ++    ++
Sbjct: 349 KVILIAG-----GLDRGNEFDELVPDI--TGVKLIVILGESAPRVKRAADKANVPYVDAK 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 402 DVADAARIAYDKAEAGDVVLL 422


>gi|256752933|ref|ZP_05493764.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748188|gb|EEU61261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 450

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 111/362 (30%), Gaps = 35/362 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++  A R  SKA I AITG+ GKTTT  +L     +             +IG PL 
Sbjct: 94  ELLGEVEFAYR-FSKAPIYAITGTNGKTTTTSLLGEMFKN----TGRKVYVAGNIGYPLI 148

Query: 153 LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A M   + DF + E+    L          +P I+ I  I P HL      E     K 
Sbjct: 149 YAVMEAAEGDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLDRHKTFENYRDIKG 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IFE   +     LNYDD     LK K+                            + S 
Sbjct: 205 RIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLE--------NGAYIKDGSI 256

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                      +    I      N+   L   S+      +A    +     +G   R  
Sbjct: 257 YISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   NP +   AI  L        G            G    S   +
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDE 364

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  +   +  + L G     ++D   +       + ++ T++        S  +GD V
Sbjct: 365 FVKAFN-GKVKKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSV 423

Query: 448 VV 449
           ++
Sbjct: 424 LL 425


>gi|153854695|ref|ZP_01995945.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
 gi|149752799|gb|EDM62730.1| hypothetical protein DORLON_01943 [Dorea longicatena DSM 13814]
          Length = 451

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 96/334 (28%), Gaps = 40/334 (11%)

Query: 146 HIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T       D    + E+    L          RP ++ I    P HL+    +E
Sbjct: 143 NIGTPYTTAVEKMTDNTITVAEMSSFQL----ESIVDFRPRVSAILNFTPDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              +AK  I +   +     LNY+D        +  A  +         +    +     
Sbjct: 199 AYVNAKKNIAKNQTEDDYCILNYEDRLTREFGEEIKANVLYFSSQRKLEEGIYLEEGNII 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                       +          +G H  +N++    + ++    VD   +++  F   E
Sbjct: 259 YNYGGVK-----ETICHVDELQILGTHNHENVMAACAMAAVYGVPVDVIRESVKAFKGVE 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R         +   T  ++S   NP +    I  + + +    G            G  
Sbjct: 314 HRI---EYVTEKKGVTYYNDSKGTNPDAAIKGIQAMKRPTVLIGG------------GYD 358

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLV 442
             S + +         +  + L G     +     +       + ++ +   L       
Sbjct: 359 KGSEYTEWINSFD-GKVKKLILLGDTKEKIAADAEKCGFKDYMFVDSFEEAVLTAAKIAE 417

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            G+ V++    +S             F  ++N L
Sbjct: 418 SGEAVLLSPACASWDMFPSYEVRGEKFKEIVNSL 451


>gi|163941652|ref|YP_001646536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           weihenstephanensis KBAB4]
 gi|226711883|sp|A9VU74|MURD_BACWK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|163863849|gb|ABY44908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           weihenstephanensis KBAB4]
          Length = 450

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++ +     IP+  V +V  A +  A           + ITGS GKTTT  +    L
Sbjct: 85  SNPLLVAAKEKQIPI--VTEVELAYSISAAPF--------VGITGSNGKTTTTMLTFEML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         N   V   +A++  + +  + EL    L  +       +P IA   
Sbjct: 135 KE---GQKHPVIAGNIGTVACEVAQLAKENEVVVTELSSFQLMGVE----SFQPKIAAFL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL      +E   AKA IF+   +T    +N DD+    L A  ++ G K ++S 
Sbjct: 188 NLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSIINADDADVMALSA--YSKGQKVLFST 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K       ++      +   +                G H  +N+L  + I  +L    
Sbjct: 246 TKEIEDGAYIKDNALYFKGEKVVKVSD-------IVLPGKHNLENILAAMSIAKLLGVSN 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L  F   + R                ++S   N  + + A+S  +Q      G 
Sbjct: 299 EAITAVLKSFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLAG- 354

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
                      G    +   DL       ++  +   G     L  A  ++    +   +
Sbjct: 355 -----------GLDRGNEFDDLIPYFK--HVKAIVTFGQTAPKLVRAAEKAGLDVIESVD 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           T+D   +   +   DGDV+++
Sbjct: 402 TLDDAVVKAYAHSTDGDVILL 422


>gi|257454325|ref|ZP_05619588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
 gi|257448228|gb|EEV23208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enhydrobacter
           aerosaccus SK60]
          Length = 486

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 119/392 (30%), Gaps = 49/392 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           L V +  +++      +PVF          V D+     +L      +    IIAITGS 
Sbjct: 87  LAVADRIIISPGIDPYLPVFDGARAKKIAIVSDI-----QLFHEVAKQRDIPIIAITGSN 141

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
            K+T   ++   + +             ++G P     +   +   + EL    L     
Sbjct: 142 AKSTVTTLVGEMVKNAGFKV----GVGGNLGTPALDLLLEP-IQMAVLELSSFQLQTTTN 196

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L       +A +  ++P HL     +     AK  IF+G++              E L +
Sbjct: 197 LAA----KVATVLNMSPDHLDRHGNMLGYHQAKHRIFQGVQSIVVNR--------EDLLS 244

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +          SFG +     Q    K    + W+    +    E      G H   N L
Sbjct: 245 RPLVADDMPTISFGSNAPDMNQYGLIKDSDGKIWLARGRERLLNEKDVPIKGEHNLMNAL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L I  +    +++ +  L  F     R                D+S   N  S  AAI
Sbjct: 305 SALAIGELAGLPLESMLTTLKNFVGLPHR---CEFITTTHQLDCFDDSKGTNIGSTIAAI 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             L ++      +   +LG   + G+        L +         V+  G     +   
Sbjct: 362 LGLGKVYAPKGKKLAVILGGQGK-GQNFAELAKPLMDYAQ-----VVYFIGEDADKIAAD 415

Query: 418 L---------PRSIHVHYSETMDGLFLFIQSS 440
           L         P  I +   +T++         
Sbjct: 416 LASAGLDAHNPAGIVLTKCQTLEQAVNQAWQD 447


>gi|167037226|ref|YP_001664804.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115645|ref|YP_004185804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226722951|sp|B0K8K5|MURD_THEP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166856060|gb|ABY94468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928736|gb|ADV79421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 454

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 111/362 (30%), Gaps = 35/362 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++  A R  SKA I AITG+ GKTTT  +L     +             +IG PL 
Sbjct: 94  ELLGEVEFAYR-FSKAPIYAITGTNGKTTTTSLLGEMFKN----TGRKVYVAGNIGYPLI 148

Query: 153 LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A M   + DF + E+    L          +P I+ I  I P HL      E     K 
Sbjct: 149 YAVMEAAEGDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLDRHKTFENYRDIKG 204

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IFE   +     LNYDD     LK K+                            + S 
Sbjct: 205 RIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLE--------NGAYIKDGSI 256

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                      +    I      N+   L   S+      +A    +     +G   R  
Sbjct: 257 YISVNGNAEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIE 316

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   NP +   AI  L        G            G    S   +
Sbjct: 317 FVDEINGVKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDE 364

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +  +   +  + L G     ++D   +       + ++ T++        S  +GD V
Sbjct: 365 FVKAFN-GKVKKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSV 423

Query: 448 VV 449
           ++
Sbjct: 424 LL 425


>gi|21910712|ref|NP_664980.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS315]
 gi|28895598|ref|NP_801948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes SSI-1]
 gi|94990778|ref|YP_598878.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10270]
 gi|47606755|sp|Q879A1|MURD_STRP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76363881|sp|P0C0D7|MURD_STRPY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595695|sp|Q1JG10|MURD_STRPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3090871|gb|AAC38404.1| uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase
           [Streptococcus pyogenes]
 gi|21904915|gb|AAM79783.1| putative uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate
           ligase [Streptococcus pyogenes MGAS315]
 gi|28810847|dbj|BAC63781.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptococcus pyogenes SSI-1]
 gi|94544286|gb|ABF34334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10270]
          Length = 452

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ D    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDEDFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 234 K----------TTQATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|313905181|ref|ZP_07838549.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
 gi|313469934|gb|EFR65268.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Eubacterium
           cellulosolvens 6]
          Length = 452

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 128/413 (30%), Gaps = 56/413 (13%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +  +V       IP++          ++ +A R+  K  ++A+TG+ GKTTT  +L   
Sbjct: 79  CDLPVVEKFKEKKIPIW---------GEIELAYRI-GKGKVLAVTGTNGKTTTVTLLGEI 128

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           +         +     +IG P T   +   +  + + E+    +  I        P  + 
Sbjct: 129 MKDYYPEVYVV----GNIGTPYTDVVLQQTENAWTVAEVSSFQMETIEEFH----PVASA 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   HL+    +EE    KA + E         LNY+D        K +A  I    
Sbjct: 181 LTNITEDHLNRHHTMEEYIRCKARVTENQTAEDCCVLNYEDEVLRPFAEKVNAKVIFFSS 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                K    +    +       ++V             +G H  +N+++ + +      
Sbjct: 241 RRVLEKGIYLEGDTIRLKDGGEVIDVVK-----TGDLQLLGLHNFENVMVAVAMAYFAGV 295

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D+  + +  F   E R         +      ++S   NP +    I  +        
Sbjct: 296 PMDSIRRTICAFRGVEHRI---EFVEEKKGVRYYNDSKGTNPDAAIKGIQAMD------- 345

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR----SIHV 424
                + G   +        +           +    L G     +     R       +
Sbjct: 346 RPTCLIGGGFDKQLPFDDWIN------AFDGKVKFFALIGQTAQTIAGTAERLGFPKEKI 399

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
            + + ++       S  V+GD V++    +S             F   ++ L 
Sbjct: 400 AFCDNLEEAVKACASHAVEGDAVLLSPACASWGQFDNYEQRGDMFKEYVHNLE 452


>gi|218899066|ref|YP_002447477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228902418|ref|ZP_04066572.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
 gi|228966866|ref|ZP_04127910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|226711880|sp|B7IUS2|MURD_BACC2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218545114|gb|ACK97508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9842]
 gi|228792965|gb|EEM40523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228857162|gb|EEN01668.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis IBL 4222]
          Length = 450

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              SKA  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISKAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA +F+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANVFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A +    I    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMELSADTKGQKILFSTT---------KEIEDGACIKDNALYFKGEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 SDIVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   + DVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYAHSKEDDVVLL 422


>gi|254362463|ref|ZP_04978571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261493188|ref|ZP_05989717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496956|ref|ZP_05993323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|153094055|gb|EDN74967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica PHL213]
 gi|261307392|gb|EEY08728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311151|gb|EEY12325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 433

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 111/348 (31%), Gaps = 43/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITGS GK+T   + T                  +IGVP+    +  D D
Sbjct: 100 FCREAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMG----GNIGVPVLSL-LEGDYD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  I+  H+  +  I +   AK  I++  E   
Sbjct: 155 LFVLELSSFQL----ETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENII 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      + +K           YS              +                 
Sbjct: 211 VNGEDAQTYPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALA 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +          + ++  L I                      G   R++          
Sbjct: 271 AMALAEAANVPREGIVKALQIY--------------------GGLPHRFQAVATNDGVRW 310

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L     +  G    +LG     G+   +   +L  +++  NI
Sbjct: 311 VNDSKATNVGSTVAALNGL-----NIAGTLYLLLG-----GDGKAADFSELKPLINKPNI 360

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G    AL +   +S+     ETM      I+  L  GD+V++
Sbjct: 361 -VCYCFGQDGAALAELSEQSV---LVETMQQAIEAIRPQLKKGDMVLL 404


>gi|124009921|ref|ZP_01694587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
 gi|123984072|gb|EAY24445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microscilla marina
           ATCC 23134]
          Length = 502

 Score = 65.7 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/409 (14%), Positives = 112/409 (27%), Gaps = 62/409 (15%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      +KA +I ITGS GK+TT  +    L+              +IG       +
Sbjct: 107 EFAARY---TKAKMIGITGSNGKSTTTLLTHHLLTQAGFKV----GLAGNIGESFAKQVV 159

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               DF + E+    L       +  RPH++++  I   H+  +        A       
Sbjct: 160 DDAYDFFVVEVSSFQLD----NCYEFRPHLSMLINITEDHMDRYENNINKYIASKFKVIQ 215

Query: 217 LEKTGTIFLNYDDS---------------------------FFELLKAKSHALGIKTIYS 249
            +     FL   D                                    S          
Sbjct: 216 KQTPEDYFLYNIDDANVTERLQKITEGIVGVSEGEEPAPNRTLPYCLPISLKNADPEKAK 275

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D +             + Q             G H   N ++ L    IL A 
Sbjct: 276 EQSLSYWDEENGNIVLNFSDRGSDEQKTMTVPVADLPLPGKHNIFNAMIALQACHILGAS 335

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F        R            I++S + N  S   A+  +       E 
Sbjct: 336 PVVLHEGLKNFS---NAPHRMEEVAELSEVKFINDSKSTNIDSAFYALDSIKM--GEDER 390

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    + +  + ++++   +  +   G     L +    ++HV   ++
Sbjct: 391 KLVWIAG-----GVDKGNDYEKIRDLVAK-KVKILICLGLDNEKLHNTFRETVHVTIRTQ 444

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
            ++            GD V++    +S             F + +  L+
Sbjct: 445 QINEAVEQAFDLARPGDTVLLSPACASYDLFKNYEERGDSFKKAVQKLV 493


>gi|289578675|ref|YP_003477302.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
 gi|289528388|gb|ADD02740.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           italicus Ab9]
          Length = 454

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 82/295 (27%), Gaps = 29/295 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + DF + E+    L          +P I+ I  I P HL      E     K  IFE   
Sbjct: 156 EDDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLDRHKTFENYRDIKGRIFENQR 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     LNYDD     LK K+                            + S        
Sbjct: 212 EDEYTVLNYDDPVTWNLKNKAKCRVFPFSRKSLLE--------NGAYVKDGSIYISVYGN 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    I      N+   L   S+      +A    +     +G   R         
Sbjct: 264 AEKIIDIEEIYIPGEHNLENALAASSVAYLSGISADVIANTLKTFKGVEHRIEFVDEING 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP +   AI  L        G            G    S   +  +  + 
Sbjct: 324 VKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDEFVKAFN- 370

Query: 399 YNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G     +KD   +       + ++ T++        S  +GD V++
Sbjct: 371 GKVKKLILIGQTAKKIKDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|332288554|ref|YP_004419406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
 gi|330431450|gb|AEC16509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Gallibacterium anatis UMN179]
          Length = 440

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 124/374 (33%), Gaps = 49/374 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 102 FCREADAPIVAITGSNGKSTVTTLVYEMAKAADLNVGIG----GNIGIPALSL-LGKGCQ 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ +    A I  I+  H++ +  +EE   AK  I+   E   
Sbjct: 157 LYVLELSSFQL----ETTYSLNAAAATILNISEDHMNRYDDMEEYRQAKLRIYRHAETIV 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                           ++     +       S          ++    +++    +    
Sbjct: 213 VNNE-----------DRATYPDYREPQHRLLSFAEKHADYYLQEMWGHTYLATDSRLLLD 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N L  + +   +       I AL  F   + R    +    +     
Sbjct: 262 VEKMKLIGRHNYMNALAAIALAQAVKIPQQGIIDALQSFAGLDHRF---QTVHYENGVRW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S +AA++ L        G    +LG     G+  ++   DL  +++  NI
Sbjct: 319 VNDSKATNVGSTEAALNGLQV-----AGNLYLLLG-----GDGKKADFSDLKPLINKSNI 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
              +  G   L L +   +S+     +TM+     I+  L  GD+V++    +S      
Sbjct: 369 -FCYCFGQDKLPLAELSSQSV---VVDTMEQAIEQIRPKLKAGDMVLLSPACASLDQFPN 424

Query: 453 ---NSCGFYRLINL 463
                  F RL   
Sbjct: 425 FEVRGQEFARLAKQ 438


>gi|226950973|ref|YP_002806064.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
 gi|254766043|sp|C1FNC3|MURD_CLOBJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226843277|gb|ACO85943.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A2 str. Kyoto]
          Length = 458

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNEMENE--ALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +++   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMINKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNRL 458


>gi|167035505|ref|YP_001670736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           putida GB-1]
 gi|166861993|gb|ABZ00401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas putida
           GB-1]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                + A IIAI+GS  K+T   ++    +   K      + 
Sbjct: 87  ALQQAAARGVKLSGDIELFARHATAPIIAISGSNAKSTVTTLVGEMAAKAGKRV----AV 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  DV+  + EL    L         +   +A +  I+  H+  +SG+
Sbjct: 143 GGNLGTPALDL-LADDVELYVLELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGL 197

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G ++      +          ++   +  +  ++FG ++  DF+    
Sbjct: 198 PAYHLAKHRIFRGAKQVVVNRQDA--------LSRPLPVEGRPCWTFGLNQP-DFKAFGL 248

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++   + ++  + Q           G H   N L  L +        +  ++AL  F   
Sbjct: 249 REVDGEKYLAFEFQALMPARELKVRGAHNQSNALAALALGHAAGLPFEPMLEALREFGGL 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +      D+S   N  +    ++ +  +    EG+ + + G   + G 
Sbjct: 309 AHRC---QWVRERNGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GA 361

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +           V L G     L DAL   + +   +++D            
Sbjct: 362 EFTALREPVKRFCRA-----VVLLGRDAERLADALGDDVPLVRVKSLDDAVQQCAQLAQA 416

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 417 GDAVLLSPACASLDMFKNFEE 437


>gi|85707767|ref|ZP_01038833.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689301|gb|EAQ29304.1| UDP-N-acetylmuramate--L-alanine ligase [Erythrobacter sp. NAP1]
          Length = 478

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 132/404 (32%), Gaps = 37/404 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VV ++ +  +   ++  +      V  A   LA   RL+S    +A+ G+ GKTTT
Sbjct: 67  GAAVVVTSSAVRRTNPEVAHALENRTPVVRRA-EMLAELMRLKS---TVAVAGTHGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L   +     I                  D D+ + E   S           +
Sbjct: 123 TSMIASLLDCGEIDPTVINGGIIEQ---YGSNARMGDSDWMVVEADES-----DGSFLRL 174

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAV+T I P HL ++   + +  A  E    +   G   L  D    + +       
Sbjct: 175 DGTIAVVTNIDPEHLDHYGDFDGVKKAFVEFIHNVPFYGAAILCVDHPEVQAVIGDVRDR 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNM 296
            +    ++G S  AD      +     +  +V ++ +  E            G H  QN 
Sbjct: 235 KVV---TYGFSLQADICGVNVRPTESGNTFDVIVRQRGEEDRRIEGVHLPMPGRHNVQNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   +    +T       F     R  +            I + Y  +P  ++A 
Sbjct: 292 LAAIAVAIEMGCSDETICNGFGSFSGVRRRFTKVGTVPFPTGHATIIDDYAHHPVEIRAV 351

Query: 357 ISVLSQISPHGEGRRIAVLGDMC-----EMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           +    + +    G    V+  M       + +L   F  +      +  I+ V+ +G   
Sbjct: 352 LGAARE-ATEAAGVEGRVIAVMQPHRYTRLNDLMDDF-QNCFNEADMVFITPVYEAGEDP 409

Query: 411 -----VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                  +L   L    H     +   D L   +   L +GD+V
Sbjct: 410 IEGVNSESLVTGLKSRGHRSAQTTPDHDDLAATLAEELREGDMV 453


>gi|294670616|ref|ZP_06735494.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307655|gb|EFE48898.1| hypothetical protein NEIELOOT_02340 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 469

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 86/427 (20%), Positives = 154/427 (36%), Gaps = 50/427 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T +      +       IPV         +  LA   R +     IAI G+
Sbjct: 63  QGADVVVTSTAVKKDNPEVTAAVAQQIPVI----PRALM--LAEMMRFKDG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L++       +      +    T AR+     + + E   S      
Sbjct: 114 HGKTTTTSLTASILAAAGLDPTFV--IGGKLTAAGTNARLGKGS-YIVAEADES-----D 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P +AV+T I   H+  +   +E++  A  +    +   G  FL  D      +
Sbjct: 166 ASFLYLTPLMAVVTNIDEDHMDTYGHSVEKLHQAFVDFIHRMPFYGKAFLCIDSEHVRAI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-----LQGKSMEVVHHGIGY 290
             +          ++G   +AD      +    Q    V       + ++ +VV +  G 
Sbjct: 226 LPRISKP----HATYGLDDSADIYATDVESIGAQMKFTVHARLKGHEPRTFDVVLNLPGR 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNAN 349
           H   N L  +G+      D +   + L  F     R + Y    L QG   L+ + Y  +
Sbjct: 282 HNVLNALAAIGVALECGVDEEAVRRGLEGFAGVGRRFQSYGEIELPQGGKALVVDDYGHH 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  M A +S      P        VL         ++    D ++VL+  ++   + V+ 
Sbjct: 342 PVEMAATLSAARGAYPDK----RLVLAFQPHRYTRTRDLFDDFSKVLNTVDVLVLTDVYA 397

Query: 407 SGFHVL-ALKDALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +G   L     AL R++  +      Y   ++ L   +   L DGDV++   + S    +
Sbjct: 398 AGEDPLPQDSRALARNVRAYGKVDPLYCADVNELPAMLLDVLRDGDVLLNMGAGSI--NK 455

Query: 460 LINLLLE 466
           +   L+E
Sbjct: 456 VPAALVE 462


>gi|260913001|ref|ZP_05919486.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
 gi|260632991|gb|EEX51157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pasteurella
           dagmatis ATCC 43325]
          Length = 434

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 125/374 (33%), Gaps = 52/374 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   IIAITGS GK+T   ++     +             +IG+P     +  + D
Sbjct: 100 FCREASKPIIAITGSNGKSTVTTLVYEMAKASGLKVGMG----GNIGIPALSL-LEQNYD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H+  +  +E+   AK  I+   +   
Sbjct: 155 LYVLELSSFQL----ETTYSLKATSATVLNVTEDHMDRYIDLEDYRQAKLRIYHNAKT-- 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                        +      L          S   +      K  + + +   + +    
Sbjct: 209 ------------AIVNTEDPLTTIDSLKSAVSFGEENSDYWLKTENGKQYFMAKNEMILP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N+L  + +       ++    AL  F   + R +    A        
Sbjct: 257 CDEIKLVGRHNYMNVLAAIALAQAANVSLEGIRTALREFSGLDHRFQLAHFANGVY---W 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L        G    +LG     G+  ++   +L+ ++   +I
Sbjct: 314 INDSKATNVGSTVAALTGLQV-----AGHLHLLLG-----GDGKEADFSELSTLIQQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
            + +  G     L     +S      +TM+     ++ +L +GD+V++    +S      
Sbjct: 364 -YCYCFGKDGAQLAKLSQQS---QLFDTMEQAINALRPNLKEGDMVLLSPACASLDQFTS 419

Query: 453 ---NSCGFYRLINL 463
                  F RL  L
Sbjct: 420 FEQRGDEFTRLAKL 433


>gi|149202237|ref|ZP_01879210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
 gi|149144335|gb|EDM32366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           TM1035]
          Length = 469

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 109/407 (26%), Gaps = 38/407 (9%)

Query: 57  ILHAVQKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARL 104
           I+   + GA      ++ +  +  +  +   V            +D+      LA     
Sbjct: 55  IVDLARAGAFDGVAALIVSPGIPHLYPVPNRVIAAAQEAGVPVDNDIGLFFRSLATDDWD 114

Query: 105 RSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                  +IA+TGS GK+TT  ++   L+   +          +IG  +     P D   
Sbjct: 115 GFDVTPKVIAVTGSNGKSTTSALIHHVLTEAGR----AAQLAGNIGRGVLDIDPPEDSGV 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL          L   + P +AV T ++P HL    G+    +AK  +F        
Sbjct: 171 VVLELSSYQTD----LARALTPDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPDRA 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    +     L    +       +      +                      +     
Sbjct: 227 VIGVDEAEGRYLAGQMAEGPNDDRVIRISVDRKLSGFGWSVFARKGFLSEYRHGRQVGSI 286

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G   + N        +             + FH   G   R +    +     +
Sbjct: 287 DLREVKGLPGSHNHQNACAAYAACRTLGLAPRVIEAGFHSYAGLPHRSQRVAEKDGVIFV 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S   A+     I     G                +           L ++ 
Sbjct: 347 NDSKATNVDSALKALLAFDNIRWICGGL---------------EKDGGLGGLAPGLAHVR 391

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++ G         L  ++      TM             GDVV++
Sbjct: 392 RAYVIGREAAQFAIGL-GAVDTEVCTTMSEAVARAVRDAEPGDVVLL 437


>gi|145296119|ref|YP_001138940.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           R]
 gi|166224333|sp|A4QFM2|MURC_CORGB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|3868935|dbj|BAA34293.1| MurC [Corynebacterium glutamicum]
 gi|140846039|dbj|BAF55038.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 486

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 143/414 (34%), Gaps = 37/414 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 91  DNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSMSVVAM 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +        +   +   G  E+ ++   E        +P++AV+T
Sbjct: 142 QAAGMDPSFAIGGQLN--------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS- 249
            + P HL  F   E       +    +   G + +  +D     L  +S   GIKT+   
Sbjct: 194 NVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYG 253

Query: 250 ------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       A   +   +  +E +   + + G+ + V+    G HM  N    L   
Sbjct: 254 TADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAG 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++  DVD  ++ LS F     R + +       F         A+  +   A+   ++ 
Sbjct: 314 YLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAART 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLAL 414
                G+   ++     +   +  F  + AE LSL + + V          + G     +
Sbjct: 374 RVKAAGKGRVIVAFQPHLYSRTMEFQKEFAEALSLADAAVVLEIYGAREQPVDGVSSEII 433

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            DA+  +I V Y      +   I       D+V+   + S       +++ L  
Sbjct: 434 TDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQLQN 485


>gi|217033769|ref|ZP_03439195.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
 gi|216943818|gb|EEC23258.1| hypothetical protein HP9810_7g50 [Helicobacter pylori 98-10]
          Length = 493

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 128/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|330973389|gb|EGH73455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 448

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 118/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  +V+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDEVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMSVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R +  R           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLREHEGVD---YYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S              +     L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG------LRAPVARHCRAAVL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVALVRVDTVQAAVEHSAKLAQRGDAVLL 420


>gi|56707396|ref|YP_169292.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669867|ref|YP_666424.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456471|ref|ZP_03664944.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370904|ref|ZP_04986909.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874234|ref|ZP_05246944.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|68565692|sp|Q5NI50|MURC_FRATT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123169630|sp|Q14JK2|MURC_FRAT1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56603888|emb|CAG44872.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320200|emb|CAL08255.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151569147|gb|EDN34801.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840233|gb|EET18669.1| UDP-N-acetylmuramate-L-alanine ligase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158535|gb|ADA77926.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 129/392 (32%), Gaps = 28/392 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             ++ +  +++   SL I            L  L         +  IAITG+ GKTTT  
Sbjct: 69  SAILSSHPLLSQARSLGIQCLQ----RAMFLAVLMKDF-----SYSIAITGTHGKTTTSS 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L  + K  + I                    D  + E   S           + P
Sbjct: 120 VLATLLCQLDKYSSFIVGGVVKYADSNIQVN---GTDKLVIEADES-----DASFLFLSP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I   H++ ++   +        F   E   +I+L  DD     L AK +    
Sbjct: 172 QVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K + S+G S NAD Q+  +    E +  +++ +   +       G +  QN    +    
Sbjct: 231 KNVTSYGFSINADVQIYDYHIIDEITHFKIRYKDDDLSFKLQLPGRYNVQNATACIIACL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-----NPASMKAAISV 359
            L    +    AL        R   Y   ++    T+ID+  +      N  S       
Sbjct: 291 DLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDRYP 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             +I    +  R     D+ +    + S    L  +L  Y+     + G     +   L 
Sbjct: 351 NKKIIHVFQPHRYTRNRDLIKDWPKALSLADQLI-LLPTYSADEQIIKGAESQDIVKGLS 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  ++  D    F++    +  V++++ 
Sbjct: 410 G---YLLADGFDHAIYFLEKLANENTVILIQG 438


>gi|289624980|ref|ZP_06457934.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647038|ref|ZP_06478381.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330868713|gb|EGH03422.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 448

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 118/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDTVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|168180985|ref|ZP_02615649.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
 gi|182668046|gb|EDT80025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum NCTC 2916]
          Length = 458

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEDYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNEMENE--ALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +++   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMINKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNRL 458


>gi|229013097|ref|ZP_04170262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
 gi|229168653|ref|ZP_04296375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228614809|gb|EEK71912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH621]
 gi|228748351|gb|EEL98211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           DSM 2048]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 127/381 (33%), Gaps = 45/381 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++ +     IP+  V +V  A +  A           + ITGS GKTTT  +    L
Sbjct: 85  SNPLLVAAKEKQIPI--VTEVELAYSISAAPF--------VGITGSNGKTTTTMLTFEML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         N   V   +A++  + +  + EL    L  +       +P IA   
Sbjct: 135 KE---GQKHPVIAGNIGTVACEVAQLAKENEVVVTELSSFQLMGVE----SFQPKIAAFL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL      +E   AKA IF+   +     +N DD+    L A  ++ G K ++S 
Sbjct: 188 NLFEAHLDYHGTKKEYGLAKANIFKNQTEADYSIINADDADVMALSA--YSKGQKVLFST 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K       ++      +   +                G H  +N+L  + I  +L    
Sbjct: 246 TKEIEDGAYIKDNALYFKGEKVVKVSD-------IVLPGKHNLENILAAMSIAKLLGVSN 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L  F   + R                ++S   N  + + A+S  +Q      G 
Sbjct: 299 EAITAVLKSFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLAG- 354

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
                      G    +   DL       ++  +   G     L  A  ++    +   E
Sbjct: 355 -----------GLDRGNEFDDLIPYFK--HVKAIVTFGQTAPKLVRAAEKAGLDVIESVE 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           T+D   +   +   DGDV+++
Sbjct: 402 TLDDAVVKAYAHSTDGDVILL 422


>gi|331090022|ref|ZP_08338912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|330402936|gb|EGG82502.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 447

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 112/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +     +IG P T        D  +  
Sbjct: 105 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIV----GNIGTPYTSV-AQETTDDAVIV 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             +S         H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 160 AEISSF--QLETIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D   +    K+ A  +           +  +  +     + + +              
Sbjct: 218 YEDDELQKFGEKTAAQVLY---------FSSARKLEKGIYLDGTKIICAADVPVELCDVS 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N    +   ++  A                G   R      +      ++S 
Sbjct: 269 ELKILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSK 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +    I  +++ +    G            G    S + +  +      +  + L
Sbjct: 329 GTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIK-AFDGKVRKLVL 375

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     +  +   +    +  ++T +  F         GD V++    +S         
Sbjct: 376 LGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYEE 435

Query: 453 NSCGFYRLINLL 464
               F  L++ L
Sbjct: 436 RGDKFKELVDQL 447


>gi|6723459|emb|CAB66325.1| MurC protein [Corynebacterium glutamicum]
          Length = 486

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 141/414 (34%), Gaps = 37/414 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 91  DNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSMSVVAM 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +        +   +   G  E+ ++   E        +P++AV+T
Sbjct: 142 QAAGMDPSFAIGGQLN--------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS- 249
            + P HL  F   E       +    +   G + +  +D     L  +S   GIKT+   
Sbjct: 194 NVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYG 253

Query: 250 ------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       A   +   +  +E +   + + G+ + V+    G HM  N    L   
Sbjct: 254 TRDAVQAHPEVPAMATVVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAG 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++  DVD  ++ LS F     R + +       F         A+  +   A+      
Sbjct: 314 YLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLRRCAT 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLAL 414
                G+   ++     +   +  F  + AE LSL + + V          + G     +
Sbjct: 374 RVKAAGKGRVIVAFQPHLYSRTMEFQKEFAEALSLADAAVVLEIYGAREQPVDGVSSEII 433

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            DA+  +I V Y      +   I       D+V+   + S       +++ L  
Sbjct: 434 TDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQLQN 485


>gi|21224390|ref|NP_630169.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces coelicolor
           A3(2)]
 gi|6919932|sp|Q9X827|MURC_STRCO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|4691386|emb|CAB41553.2| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           coelicolor A3(2)]
          Length = 462

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 146/423 (34%), Gaps = 48/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ +      L       IPV    D L AL
Sbjct: 49  ALRALGATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++LS +    +     +           
Sbjct: 107 MN---------GLRPIAVAGTHGKTTTTSMLAVSLSELDLGPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 155 LHGEGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ +  D      L  +    G     ++G+S++AD ++        +S + V 
Sbjct: 210 KIVPGGTLVIAADHEGARELTRRL--AGRVRTVTYGESEDADVRILSVVPQGLKSEVTVV 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L   + L         AL+ +   + R +       
Sbjct: 268 LDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQ----LKG 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +     +       RI VL     +   +Q    ++ + 
Sbjct: 324 EAAGVQVVDSYAHHPTEMTADLEA---MRAAVGDARILVLFQPH-LFSRTQELGKEMGQA 379

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + +A       V      D     +      GD
Sbjct: 380 LALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPALVAGMAKAGD 439

Query: 446 VVV 448
           +V+
Sbjct: 440 LVL 442


>gi|206895540|ref|YP_002247022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738157|gb|ACI17235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 441

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 104/335 (31%), Gaps = 47/335 (14%)

Query: 146 HIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IGVP+T     P+     + E+    L       H  RP +AV   + P HL     +E
Sbjct: 138 NIGVPVTSFLNEPISETIIVAEVSSFQL----ETVHTFRPQVAVFLNLTPDHLDRHGSME 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                KA IF+  +      LN +D +   L     +  +      G             
Sbjct: 194 NYFQTKARIFKLQQPQDLGVLNAEDRWASSLIGSLKSRTLAFGIEKGDVHW--------- 244

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                S   + + G ++  V             +  G+       +       S      
Sbjct: 245 -----SEGFLNVLGTTVASVSDVKLRGRHNLANIAAGVA-ACYHLLPDGFDFGSAISQFC 298

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R     + G  +  D+S   NP S   A+    +         + +LG     G  
Sbjct: 299 APEHRIEFVRSVGGVSFYDDSKATNPDSTIVALEAFQE-------PVVVILG-----GRN 346

Query: 385 SQSFHIDLAEVLSLYN-ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSL 441
                  LAE +   + +    + G    ++K++L  +   ++  +++++          
Sbjct: 347 KGMDFAALAEFIKRKSTVKWAVVMGEAKESIKESLLANGFENISEADSLEEAVHLAYEIA 406

Query: 442 VDGDVVVV---KSS---------NSCGFYRLINLL 464
             GDVV++    +S             F  ++  L
Sbjct: 407 APGDVVLLSPACASFDMFKNFEERGDRFKEIVRKL 441


>gi|325266252|ref|ZP_08132931.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
 gi|324982214|gb|EGC17847.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella denitrificans ATCC
           33394]
          Length = 469

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 136/422 (32%), Gaps = 45/422 (10%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T + A    +       IPV         +  LA   RL+     IAI G+ 
Sbjct: 64  GAEVVVTSTAIKADNPEVQAALAQHIPVI----PRAMM--LAELMRLKDG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +    L +       +                    ++ + E   S       
Sbjct: 115 GKTTTTSLTASILGAAGMDPTFVIGGKL---TAAGTNAKLGKGEYLVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               + P I V+T I   H+  +    ++        + + +       +     E +++
Sbjct: 167 SFLYLSPVITVVTNIDEDHMDTYGQ--DVQRLHQAFIDFVHRMPFYGKAFLCVDSEHVRS 224

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEVVHHGIGYHMA 293
               +         + + AD      +    Q       +        +V  +  G H  
Sbjct: 225 ILPKIKKPFATYAIEDETADIYATNVRTNGAQMQFTAHTRHTGSVHEFDVTLNLPGRHNV 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPAS 352
            N L ++G+     A ++   + L+ F     R + Y       G   LI + Y  +P  
Sbjct: 285 LNALASIGVALECKAPIEAIQQGLANFAGVGRRFQSYGNIALPSGGEALIIDDYGHHPVE 344

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAEVLSLYNISHVWLSGFH 410
           M    S ++       GRR+ +             F+   D+        ++ V+ +G  
Sbjct: 345 M---ASTIAATRGAYPGRRLVLAFQPHRYTRTKDLFYQFVDILSTADRVVLTEVYAAGEA 401

Query: 411 VLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +A  +   L  ++         Y   +  L   + S L DGDVV+   + S    R+  
Sbjct: 402 PIADANGHSLANAVRARGLVEPIYCADVQALPQTLLSILQDGDVVLTMGAGSI--NRVAQ 459

Query: 463 LL 464
            L
Sbjct: 460 AL 461


>gi|326202129|ref|ZP_08191999.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987924|gb|EGD48750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           papyrosolvens DSM 2782]
          Length = 465

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 126/393 (32%), Gaps = 53/393 (13%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TL 153
           L            A + A+TGS GKTTT  ++   LS              +IG+PL + 
Sbjct: 104 LTSEMEVFLKLCPAQVFAVTGSDGKTTTTTLIYKILSEEGYNCWLG----GNIGIPLLSK 159

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + D  + EL    L     +T    P +AV+T ++P HL     ++E   AK  I
Sbjct: 160 IDEVAETDKVVLELSSFQL-----MTIRDCPSVAVVTNLSPNHLDVHKSLQEYIDAKKNI 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F   ++   + LNYD+   +       A G    +S   +       +      ++    
Sbjct: 215 FIYQKENEKLVLNYDNEITKSF--NYEARGEHVYFSRLSNLEEGVVYQDGVIMVKKG--- 269

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                  +E     I         M     +I     +T  K  + F+  E R +  R  
Sbjct: 270 -NESTVIVEGDKIKIPGVHNIENYMAATAATIDYVKPETIAKIATTFNGVEHRIELVREL 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
               F+    +S  +   +          +                  G+     +  + 
Sbjct: 329 NGIKFYNSSIDSSPSRTIAALKTFKNKVILIAG---------------GKDKGIPYDSIG 373

Query: 394 EVLSLYNISHVWLSGFHVLALKDA---------LPRSIHVHYSETMDGLFLFIQSSLVDG 444
           E+++   +  + L G     +++A         +   I + + ++ + +          G
Sbjct: 374 EIIAE-KVKCLLLIGATASRIEEAYKNYLQQRDIDNEIEIIHCDSYEEVVKEAYGQAKSG 432

Query: 445 DVVVVK-SS-----------NSCGFYRLINLLL 465
           D +++  +S               F  L+N L 
Sbjct: 433 DCIILSPASTSFDMFKNFEHRGNVFKELVNKLK 465


>gi|306830842|ref|ZP_07464004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426865|gb|EFM29975.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 452

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 86  DNPMVARAIEKNIPVI-------TEVELAYMI---SDAPIIGITGSNGKTTTTTMIAETL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L           PHIAVI
Sbjct: 136 NN----GGKSGLLSGNIGFPASEVAQTATDKDILVMELSSFQLMGTD----TFHPHIAVI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I + +     + LN++    + L  K+ A  +    +
Sbjct: 188 TNLMPTHIDYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTVAKVVPFSTT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ +  +    
Sbjct: 248 ----------EKVDGAYLDGDTLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIA 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 298 NDAIKETLTHFGGVKHRL---QALGEINGVKFYNDSKSTNILA------TQKALSGFENS 348

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  + ++    ++
Sbjct: 349 KVILIAG-----GLDRGNEFDELVPDI--TGVKLMVILGESAPRVKRAADKANVPYVDAK 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 402 DVADAARIAYDKAEAGDVVLL 422


>gi|71903854|ref|YP_280657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS6180]
 gi|209559688|ref|YP_002286160.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes NZ131]
 gi|122063268|sp|Q48SK8|MURD_STRPM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226722949|sp|B5XMA3|MURD_STRPZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71802949|gb|AAX72302.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS6180]
 gi|209540889|gb|ACI61465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes NZ131]
          Length = 452

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ D    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDEDFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|10566906|dbj|BAB16028.1| MurD [Streptococcus pyogenes]
          Length = 439

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ D    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 55  LLDEDFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 108

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 109 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 160

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 161 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 220

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 221 K----------TTKATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 270

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 271 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 323

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 324 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 374

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 375 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 408


>gi|56808764|ref|ZP_00366481.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M49 591]
          Length = 438

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ D    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 54  LLDEDFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 107

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 108 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 159

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 160 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 219

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 220 K----------TTKATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 269

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 270 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 322

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 323 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 373

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 374 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|308184524|ref|YP_003928657.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
 gi|308060444|gb|ADO02340.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori SJM180]
          Length = 493

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E  + G       
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFETLINGVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +    P   R       L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVFELKPINHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHQGRKVIVTPGLVESNTESNE---ALAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  +       +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASKLKIPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|322374681|ref|ZP_08049195.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
 gi|321280181|gb|EFX57220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C300]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 133/389 (34%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIQVLTEVELAYLISDAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELASKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                            Q +      E   +  + +           G H  +N L  + 
Sbjct: 239 ----------TVVPFSTQEKVDGAYLEDGQLCFRGEVVMAASEIGVPGSHNVENALAAIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D  T  + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQTIKETLSAFGGVKHRL---QFVDEIQGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAEKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVTYVDATDIADATRKAYELATQGDVVLL 421


>gi|89067941|ref|ZP_01155385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
 gi|89046539|gb|EAR52595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanicola
           granulosus HTCC2516]
          Length = 464

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 120/402 (29%), Gaps = 43/402 (10%)

Query: 64  GA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--AT 109
           GA      ++ +  +  +     PV            +D+      L  +          
Sbjct: 62  GALDDVAALIVSPGIPHLYPRPHPVIAAAWEAGVPVDNDIGLFFRSLGQSDWDSHDVAPK 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TGS GK+TT  ++   L               +IG  +     P D    + EL  
Sbjct: 122 VVAVTGSNGKSTTAALIHHVLRE----GGRESQLAGNIGRGVLDIDPPGDGGVVVLELSS 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNY 227
                   L   + P +AV T ++P HL    G+     A  +     G ++        
Sbjct: 178 YQ----TELARSLTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRCIVGVDEL 233

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +  F     A+S A       S  +     + +   K    +     Q+    +  +   
Sbjct: 234 EGRFLANQLAESRADDRVIRISADRKLAEGWSVTARKGYLSELRKGRQVGSIDLREIKGL 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  QN      +   L         A + +     R    +    +G    +++S  
Sbjct: 294 PGAHNHQNACAAYAVARTLGLGPRQIEAAFASYPGLPHRS---QLIAERGGVRFVNDSKA 350

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  S   A++   +I     G     L     +G            + +   +   ++ 
Sbjct: 351 TNVDSAAKALAAFGRIRWICGG-----LQKEGGLG----------GLLDAAGGVVKAYVI 395

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G    A   +L   I      TM        +    GDVV++
Sbjct: 396 GREAEAFAMSL-TGIDAEVCTTMADAVARSAAEAEPGDVVLL 436


>gi|295101921|emb|CBK99466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           prausnitzii L2-6]
          Length = 466

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/385 (14%), Positives = 114/385 (29%), Gaps = 52/385 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVD 159
                   I+A+TGS GKTTT  +++    +  +     G+        +P         
Sbjct: 113 FFQFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRRVHLGGNIGAALLPMLPEVSP----- 167

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P+IAV+T + P HL +   ++E   AK  I    ++
Sbjct: 168 DDVAVVELSSFQL-----ISMHQSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQ 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L Y++     ++       +              +        E   + +   G 
Sbjct: 223 PCRAVLGYENEISRSMQKDCKGKQVWFTRL--------HETDNGAFLREDGMLCMAENGV 274

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +          + +  L   +              V     G   R          
Sbjct: 275 VTPFLAQKDVKLRGLHNIENLLAAAAAVWGEVPVEAIQLVGSSFTGVEHRIEPVRVLDGV 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S   +P    A +    Q      G            G      +  LA  +   
Sbjct: 335 TYYNDSIGTSPTRTIAGLRSFDQKVILIAG------------GYDKHIPYEPLAPEI-TA 381

Query: 400 NISHVWLSGFHVLALKDALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVVK-S 451
           ++ ++ L G     ++ A+    + H       +++ M       ++    GD++++  +
Sbjct: 382 HVKNLVLMGATGPRIEKAVREDPNFHEAELPIQHADNMQHAVELARACAKPGDIIILSPA 441

Query: 452 S-----------NSCGFYRLINLLL 465
           S               F  ++N L 
Sbjct: 442 SASFDLYPNFEVRGREFKSIVNALK 466


>gi|145630233|ref|ZP_01786015.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
 gi|144984514|gb|EDJ91937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae R3021]
          Length = 358

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 22/296 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+    +   
Sbjct: 49  IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVINA 108

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+  ++ L     A+ +     F    +   +        + + +  +    +  +   
Sbjct: 109 DDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSP 168

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L+ +  +      ++  +          GR +  +             + 
Sbjct: 169 LIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVCGRMEMIQYPNKPIVIVDYAHTP 228

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A   ++ AA         H +G    + G     G         L   ++      + +
Sbjct: 229 DALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQFAEKIIV 277

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +         V           F   S V+ DV+++  K 
Sbjct: 278 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKG 333


>gi|134302664|ref|YP_001122633.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|166224691|sp|A4J011|MURC_FRATW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134050441|gb|ABO47512.1| UDP-N-acetylmuramate--alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 130/392 (33%), Gaps = 28/392 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             ++ +  +++   SL I            L  L         +  IAITG+ GKTTT  
Sbjct: 69  SAILSSHPLLSQARSLGIQCLQ----RAMFLAVLMKDF-----SYSIAITGTHGKTTTSS 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L   L  + K  + I                    D  + E   S           + P
Sbjct: 120 VLATLLCQLDKYSSFIVGGVVKYADSNIQVN---GTDKLVIEADES-----DASFLFLSP 171

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +IT I   H++ ++   +        F   E   +I+L  DD     L AK +    
Sbjct: 172 QVVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSD 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           K + S+G S NAD Q+  +    E +  +++ +G  +       G +  QN    +    
Sbjct: 231 KNVTSYGFSINADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIACL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-----NPASMKAAISV 359
            L    +    AL        R   Y   ++    T+ID+  +      N  S       
Sbjct: 291 DLGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDRYP 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             +I    +  R     D+ +    + S    L  +L  Y+     + G     +   L 
Sbjct: 351 NKKIIHVFQPHRYTRNRDLIKDWPKALSLADQLI-LLPTYSADEQIIKGAESQDIVKGLS 409

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  ++  D    F++    +  V++++ 
Sbjct: 410 G---YLLADGFDHAIYFLEKLANENTVILIQG 438


>gi|303256684|ref|ZP_07342698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
 gi|302860175|gb|EFL83252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderiales bacterium 1_1_47]
          Length = 452

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/370 (12%), Positives = 99/370 (26%), Gaps = 31/370 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++            +      +    + ++ + E   
Sbjct: 105 VLAVAGTHGKTTTTSMLA---WILEDCGLNPSFLIGGVPQNFGHSARLTESEYFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  +E I      +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYSPRTVILNNLEYDHADIFPNLEAIERQFHHLVRTIPSHGKVIFNE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  +         ++  +         +    +  +    +         E     
Sbjct: 222 ASEALHRVLKMGLWTPAESFGTSPVCDWRLVEHEGARLFAGGKEVGRFELSLPGEHNLLN 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               +A  +   +   +    D  +  + +      +G     +   +        E   
Sbjct: 282 ASAAVAAAVNAGVS--AERAVDALSRFEGVKRRMEVKGEVAGTKVIDDFAHHPTAIEETI 339

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               S      +L+ + P     +   LG M      S            L     V+  
Sbjct: 340 KAVRSKYQTGRLLAVLEPRSNTMK---LGTMKAQLPGS------------LVQADKVFCY 384

Query: 408 -GFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRL 460
            G  V         P        + ++ L   + S    GD ++V  SN  GF     +L
Sbjct: 385 QGPAVQWDTAAALAPLGEKAEEFKDLEALVEDVVSQAEQGDTILV-MSNG-GFGGVHKKL 442

Query: 461 INLLLEEFPA 470
           ++ L  +F A
Sbjct: 443 LDGLKSKFGA 452


>gi|288904810|ref|YP_003430032.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
 gi|288731536|emb|CBI13091.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Streptococcus
           gallolyticus UCN34]
          Length = 451

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 133/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 85  DNPMVARAIEKNIPVI-------TEVELAYMI---SDAPIIGITGSNGKTTTTTMIAETL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L        +  PHIAVI
Sbjct: 135 NN----GGKSGLLSGNIGFPASEVAQTATDKDILVMELSSFQLMGTD----IFHPHIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I + +     + LN++    + L  K+ A  +    +
Sbjct: 187 TNLMPTHIDYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTVAKVVPFSTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ +  +    
Sbjct: 247 ----------EKVDGAYLDGDTLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIA 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 297 NDAIKETLTHFGGVKHRL---QALGEINGVKFYNDSKSTNILA------TQKALSGFENS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  + ++    ++
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGVKLMVILGESAPRVKRAADKANVPYVDAK 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DVADAARIAYDKAEAGDVVLL 421


>gi|297203112|ref|ZP_06920509.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
 gi|197717453|gb|EDY61487.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sviceus ATCC
           29083]
          Length = 463

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 152/423 (35%), Gaps = 47/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L       IPV    D L +L
Sbjct: 49  ALRALGATVHIGH--AAEHLAADATCVVVSSAIRADNPELARAAELGIPVVHRSDALASL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++LS +    +     +           
Sbjct: 107 MD---------GLRPIAVAGTHGKTTTTSMLAVSLSELGLRPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E   S     ++      P +A++  +   H +N++ ++EI  +     +
Sbjct: 155 LHGEGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFVD 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + K GT+ +N D      L  +  A G+  + ++G +++AD ++        +S + V 
Sbjct: 210 RIAKGGTLVVNADHEGARELTWRVTASGV-RVVTYGDAEDADVRVLSVAPQGLKSEVTVL 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L     L    +    AL+ +   + R +       
Sbjct: 269 LDGRQLTFTVSVPGRHYAHNAVAALAAGVALGVPAEDLAPALAAYTGVKRRLQ----LKG 324

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ E 
Sbjct: 325 EAAGVQVIDSYAHHPTEMTADLEAM----RAAAGDARILVVFQPHLFSRTQELGKEMGEA 380

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + DA       V        +   +      GD
Sbjct: 381 LALADGSLVLEIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPEVVAGMAKAGD 440

Query: 446 VVV 448
           +V+
Sbjct: 441 LVL 443


>gi|317501229|ref|ZP_07959434.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897405|gb|EFV19471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 454

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 112/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +     +IG P T        D  +  
Sbjct: 112 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIV----GNIGTPYTSV-AQETTDDAVIV 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             +S         H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 167 AEISSF--QLETIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D   +    K+ A  +           +  +  +     + + +              
Sbjct: 225 YEDDELQKFGEKTAAQVLY---------FSSARKLEKGIYLDGTKIICAADVPVELCDVS 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N    +   ++  A                G   R      +      ++S 
Sbjct: 276 ELKILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSK 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +    I  +++ +    G            G    S + +  +      +  + L
Sbjct: 336 GTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIK-AFDGKVRKLVL 382

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     +  +   +    +  ++T +  F         GD V++    +S         
Sbjct: 383 LGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYEE 442

Query: 453 NSCGFYRLINLL 464
               F  L++ L
Sbjct: 443 RGDKFKELVDQL 454


>gi|241895692|ref|ZP_04782988.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
 gi|241871059|gb|EER74810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Weissella
           paramesenteroides ATCC 33313]
          Length = 444

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 121/354 (34%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA       +   IA+TGS GKTTT EM+   L +       + + N    V     +M
Sbjct: 95  ALAQKY---IQENWIAVTGSNGKTTTTEMIASVLRTQTGDGHVLVAGNIGTPVSEVAPKM 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D  + EL    L          +PHIAV+T I  +HL+     E   +AK  I + 
Sbjct: 152 LKD-DVLVTELSSFQL----TGMPAPKPHIAVLTNIFASHLNFHGTRENYVAAKMNITKH 206

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                   +NYD+  +  L  +++A              +   + +     +   +  + 
Sbjct: 207 QTAADFFVVNYDNEEWRHLAEQTNAT---------IVPFSRKGVSEAGAYLKNGSLYYKE 257

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H  +N L  + +  ++  +      AL  F   E R    +   N 
Sbjct: 258 EFIIAADELGVPGTHNIENALAAIAVGKLMRVETTNIAGALRSFSGVEHR---LQFIGNF 314

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               + ++S   +  +        ++++  G    + +L    + G+        +    
Sbjct: 315 YDRPVYNDSKATDIEA--------TEMALSGFNVPVILLAGGLDRGDDQMRLLSAM---- 362

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++  + + G     L     +  I V Y++               G+V+++
Sbjct: 363 -KQHVKGLIVFGETAEKLAAVGKKIGIPVLYAKDAPSAVKPAFELSEAGEVILL 415


>gi|110639124|ref|YP_679333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|118595652|sp|Q11RH3|MURD_CYTH3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110281805|gb|ABG59991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 450

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 131/434 (30%), Gaps = 56/434 (12%)

Query: 56  FILH------AVQKGA-------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           FI        A ++G           ++         +  + +      +  ++++  A 
Sbjct: 40  FIAELQQAGIAFEQGVHSEEKILSAQLIVKSPGIPEKAPIMKLIRSK-AIEVISEIEFAY 98

Query: 103 RL-RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           R     A  IAITGS GKTTT  +    L+ +  +         +IG  L    +    D
Sbjct: 99  RHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSV----GLGGNIGTSLARQIIHEKKD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKT 220
             + EL    L       +  +  +AV+  I P HL  +    E   ++K  IF+ L   
Sbjct: 155 VYVLELSSFQLD----DMYTFKADVAVLLNITPDHLDRYEYKFENYTASKFRIFQNLTPA 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                  +DS  E  K            S  +  +A           E++     L    
Sbjct: 211 DYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYSAGAYSD------EKTIQIHALDDTV 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +             N +  +  ++   +      K+++          R     +     
Sbjct: 265 VTCNTEEFPLQGKHNYINIMAALNAAVSIGADIHKSIASIKSFRNAPHRLEFVGSIYGVK 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S+  A+  +           + ++G + +  + SQ       E L    
Sbjct: 325 FVNDSKATNVDSVWYALDSMKT-------PVVLIVGGVDKGNDYSQ------IEALVKEK 371

Query: 401 ISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +  V   G     +       +  +  + +M         S   GD V++    +S    
Sbjct: 372 VHTVVALGKDNSKVLSGFASMVSEIKEAHSMVEAIRIAHDSAKKGDTVLLSPACASFDLF 431

Query: 453 -----NSCGFYRLI 461
                    F  L+
Sbjct: 432 KNYEDRGTQFRNLV 445


>gi|308069882|ref|YP_003871487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
 gi|305859161|gb|ADM70949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa E681]
          Length = 473

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 109/357 (30%), Gaps = 27/357 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVD 161
               KA II ITGS GKTTT   +   L +             +IG P+  A +     +
Sbjct: 107 YHLCKAPIIGITGSNGKTTTTTWVGKLLEASGMN----PIVAGNIGTPVCEAAVDAKSDE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T   RP +A +  +A  HL    G+E+  ++KA +F       
Sbjct: 163 WMVVELSSFQL----KGTKDFRPTVACLLNVAETHLDYHGGMEDYVASKARLFANQTAAD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  +N+DD     L     A  +    +    +  +          + +    +      
Sbjct: 219 TAVVNWDDPVCRELVPYIKAKLLPFSMT---ERLQEGVFADPPYIPDVTDDIERSIVYRD 275

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                     +A+  L     V    A    AI A +           +R   ++  + L
Sbjct: 276 GNGVLHPIIGVAEIGLPGRFNVENALAACAIAIAAGAEPANLAEPLSTFRGVEHRLEYVL 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S               +   + + G     G    S + +L   L    +
Sbjct: 336 EHAGVAYYNNSKATNSKATMMALSSFKQPIVLIAG-----GLDRGSDYTELVPSLQE-GV 389

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMD-------GLFLFIQSSLVDGDVVVV 449
             V L G     L +   ++   HV   +  +                   GDVV++
Sbjct: 390 KAVVLLGETRHKLAERAQQAGIEHVKVVDNGEDAAATLVEAVNKAAEFAETGDVVLL 446


>gi|73662897|ref|YP_301678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|122063263|sp|Q49WW5|MURD_STAS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72495412|dbj|BAE18733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 449

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 131/405 (32%), Gaps = 55/405 (13%)

Query: 68  VVVNTDMVASIGSLSIPVF--GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           ++V    +       +P+    V+  L  L ++ ++  + S+A II +TG+ GKTT   +
Sbjct: 74  IIVKNPGIPYT----VPLIEAAVEKGLTILTEVELSYLI-SEAPIIGVTGTNGKTTVTSL 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +       + T    G+      V   +A+     D+ + EL    L  I       +PH
Sbjct: 129 IGDMFQKSRVTGKLSGNIGY---VASKVAQEVTADDYLVTELSSFQLLGID----QYKPH 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I  AHL     ++   +AK +I++   +   +  NY       L          
Sbjct: 182 IAIITNIYSAHLDYHETLDNYQNAKKQIYKNQTENDYLICNYHQ---RHLIESETLRAKT 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             +S  +  +  +    +        +         E     I   +   +L  + + +I
Sbjct: 239 YYFSTQQEVDGIYVKDDYIVFKGFRIIHKDDLVLPGEHNLENILAAVLAALLSGISVKAI 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           + +                G   R +           ++S   N  + + A+    Q   
Sbjct: 299 IDSL-----------TSFSGIEHRLQYIGTNKTNKYYNDSKATNTLATQFALDSFKQPII 347

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRSIHV 424
              G            G    +   +L   +   N+  +   G      +K    +  +V
Sbjct: 348 WLCG------------GLDRGNDFDELIPHMK--NVRMMVAFGETKEKFIKLGESQGKYV 393

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGF 457
             +  +      IQS +   DVV++    +S             F
Sbjct: 394 ITANDVQDAVDKIQSVIEPNDVVLLSPACASWDQYNTFEERGNKF 438


>gi|315646029|ref|ZP_07899150.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
 gi|315278790|gb|EFU42104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           vortex V453]
          Length = 479

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 81/428 (18%), Positives = 135/428 (31%), Gaps = 48/428 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALN------KLAVAARLRSKATIIAITGSVGKTTT 122
           +++  +   + +  IP   V  V  AL            A    +A II ITGS GKTTT
Sbjct: 68  LIDPGVALLVKNPGIPY-SVPPVRKALELEIPIVTEVEVAYHLCEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHL 181
              +   L S   +         +IG PL+ A      D + + EL    L         
Sbjct: 127 TTWVGKLLESAGLS----PIVAGNIGTPLSEAAAEATPDNWMVVELSSFQLKGTEEF--- 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL----KA 237
            RP IA +  IA  HL    G+++  S+KA +F       T  LN+DD     L    KA
Sbjct: 180 -RPRIACLLNIAETHLDYHGGMDDYISSKARLFVNQTADDTAVLNWDDPVCRNLVPYIKA 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     +      G   +  +         ++  +   +     E   H I       + 
Sbjct: 239 RIIPFSMTESLREGVYLSTPYAPGSQDSDEDEGDVGRTIIYTDGEGFTHEIIRVENIGLP 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +     A    AI A       EG    +R   ++  F    +  +    S     
Sbjct: 299 GRFNV-DNALAACAIAIAAGVAPDQLEGALSSFRSVEHRLEFVAELQGISYYNNSKATNS 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              +      +   I + G     G    S + DL   +    +  V L G     + +A
Sbjct: 358 KATNMALTSFKEPIILIAG-----GLDRGSDYEDLIPSMQGR-VKAVVLIGETKEKIANA 411

Query: 418 LPRS--IHVHYSE-------TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
             ++    +   +       T+             GD+V++    +S             
Sbjct: 412 AAKAGLKDIILVDNGKDAAATLTSAVRKASELAESGDIVLLSPACASWDMFPSFEVRGSI 471

Query: 457 FYRLINLL 464
           F   ++ L
Sbjct: 472 FKEAVHNL 479


>gi|89095261|ref|ZP_01168182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
 gi|89080468|gb|EAR59719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanospirillum
           sp. MED92]
          Length = 449

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 121/375 (32%), Gaps = 40/375 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A +IAITGS  K+T   ++     +             +IG P+       + D
Sbjct: 103 FCREISAPVIAITGSNAKSTVTTLVGEMAEAAGINV----GVCGNIGTPVLEMLEQPEKD 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ +R  +A +  I+P H+  +  +++   AK  IF G +   
Sbjct: 159 LYVIELSSFQL----ETTNDLRAEVATVLNISPDHMDRYDSMQDYYKAKHRIFRGAKNVV 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +   +           L      +       D +L    +     W+ + L     
Sbjct: 215 VNRDDSLTAPL---------LPQGVKQTAFHLGKPDLKLFGLIEDQGDVWLALGLDKLIA 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +       +D  + AL  F     R             T 
Sbjct: 266 ASELKMRGRHNLANALAALALGQAAGLPMDAMLNALRGFTGLRHRC---EWVAEHQGVTY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +  AA++ L        G  + + G     G+   +  ++LAE L  Y  
Sbjct: 323 FNDSKGTNVGATVAALNGLGGTLSEENGI-VLIAG-----GDGKGAEFVELAEPLRNYGR 376

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + V+  G     L       I+   + TMD   +        GD+V++    +S      
Sbjct: 377 ALVY-IGVDGERLASQCGD-INSRPAATMDEAVVIASQLAKSGDIVLLSPACASFDMFAG 434

Query: 453 ---NSCGFYRLINLL 464
                  F + +  L
Sbjct: 435 FPQRGDAFVQAVETL 449


>gi|169351140|ref|ZP_02868078.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
 gi|169292202|gb|EDS74335.1| hypothetical protein CLOSPI_01919 [Clostridium spiroforme DSM 1552]
          Length = 452

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLAR 155
           +LA     +     I +TG+ GKTTT  ++   L    +     G+       + L    
Sbjct: 99  ELAYQVAKKQHY--IGVTGTNGKTTTVTLIDKILKGQYQNVHLAGNVGMPLCDIVLDHNL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LEEENHYIVIEMSNFQLLDID----TFKPNVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K     +N DD   +    +      +   S     +            +   +  Q
Sbjct: 213 NTNKNDCFVVNLDDQVLDKYLKQYPIPCKQITMSLDNQADC---------MIKDKAIYYQ 263

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +G H  QN+++ + I        +   + ++ F   E R         
Sbjct: 264 NEFIIDLDDIKLVGNHNLQNIMIAICIAKKCDVKNEIINQEIASFIGVEHRI---EFVKE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                + ++S   N  +   A+    Q      G     L D+ EM   S          
Sbjct: 321 INGIKIYNDSKATNTDASIIALKAFKQPVILLMGGFDKGL-DLKEMSTYSN--------- 370

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS--- 452
                I  +   G      KD +    +    + +    L   ++   GD+V++  S   
Sbjct: 371 ----KIKRLVTFGAAGKRFKDEM-HVENSICVKNLKEATLEAINNATAGDIVLLSPSTSS 425

Query: 453 ---------NSCGFYRLI 461
                        F  ++
Sbjct: 426 FDEFSGYEQRGNVFKEIV 443


>gi|308062061|gb|ADO03949.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Cuz20]
          Length = 493

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 127/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+ K  L   L +    +A   S N  +G+       +    D  I 
Sbjct: 167 NLKVIAITGSFGKTSIKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|153814610|ref|ZP_01967278.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
 gi|145848104|gb|EDK25022.1| hypothetical protein RUMTOR_00824 [Ruminococcus torques ATCC 27756]
          Length = 454

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 112/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++AITG+ GKTTT  +L   +   K+    +     +IG P T        D  +  
Sbjct: 112 KGDVLAITGTNGKTTTTALLGQIMQDYKEHAYIV----GNIGTPYTSV-AQETTDDAVIV 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             +S         H   P ++ I  I P HL+    +E    AK  I E   K     LN
Sbjct: 167 AEISSF--QLETIHTFHPKVSAILNITPDHLNRHHTMEAYIEAKERIAENQTKADVCVLN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D   +    K+ A  +           +  +  +     + + +              
Sbjct: 225 YEDDELQKFGEKTAAQVLY---------FSSARKLEKGIYLDGTKIICAADVPVELCDVS 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N    +   ++  A                G   R      +      ++S 
Sbjct: 276 ELKILGTHNYENVMAASAMAYAYGVPIEVIRKNLLTFPGVEHRIEFVAEKRGVLYYNDSK 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +    I  +++ +    G            G    S + +  +      +  + L
Sbjct: 336 GTNPDAAIKGIQAMNRPTILIGG------------GYDKDSEYDEWIK-AFDGKVRKLVL 382

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     +  +   +    +  ++T +  F         GD V++    +S         
Sbjct: 383 LGATREKIAQSAHANGFDDIIMADTFEEAFEQCVKYAKPGDAVLLSPACASWGMFKNYEE 442

Query: 453 NSCGFYRLINLL 464
               F  L++ L
Sbjct: 443 RGDKFKELVDQL 454


>gi|325130846|gb|EGC53579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis OX99.30304]
          Length = 445

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  +   
Sbjct: 218 VLNVDDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQG---------LPHRVEKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +     D+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|154494018|ref|ZP_02033338.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
 gi|154086278|gb|EDN85323.1| hypothetical protein PARMER_03363 [Parabacteroides merdae ATCC
           43184]
          Length = 453

 Score = 65.3 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 104/345 (30%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 110 DAKMICITGSNGKTTTTMLTYHILRQAGVD----AGLAGNVGNSLALQVAEDPHAVYVIE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  +  IA++  I P HL  ++  ++    AK  I            
Sbjct: 166 LSSFQLD----NMYDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRIIRNQTAEDAFIF 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H       ++              K   E S     ++    E + 
Sbjct: 222 WNDDPIIAREIAKRHPQATLYPFAETHEAGVKGYTEDKKIIIETSNGTFTME----EDLL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L +     ++    +    +LS F   E R               I++S
Sbjct: 278 ALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVEHRL---EKVARVRGVDYINDS 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E L    +  + 
Sbjct: 335 KATNVNSCWYALQSMTT-------PLVLILG-----GTDKGNDYSEI-EELVKKKVHALI 381

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + V   + +M+            GD V++
Sbjct: 382 FLGVDNAKLHGFFDGKVPVIEDARSMEEAVAKAYKLAEKGDTVLL 426


>gi|324990672|gb|EGC22608.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK353]
          Length = 459

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 127/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +   + D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A AK  I + +     + 
Sbjct: 175 MELSSFQLMGIEAFY----PQIAVITNLMPTHLDYHGSVEEYAVAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQVAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 385 VILGQSAARVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|260913004|ref|ZP_05919489.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
 gi|260632994|gb|EEX51160.1| UDP-N-acetylmuramate-alanine ligase [Pasteurella dagmatis ATCC
           43325]
          Length = 482

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/425 (17%), Positives = 147/425 (34%), Gaps = 50/425 (11%)

Query: 65  AGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ +              IPV        A   LA   R R     IAI G+ G
Sbjct: 84  ASVVVVSSAIKPDNIEVVTAKEKRIPVIQ-----RA-QMLAEIMRFRHG---IAIAGTHG 134

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+++  +        +                  +   G     ++   E    
Sbjct: 135 KTTTTAMISMVYAEAGLDPTFVNGGLVK--------SAGTNAHLGCSRYLIAEADESDAS 186

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P ++V+T I P H+  +    EE+          L   G   L  DD   E L  
Sbjct: 187 FLHLQPMVSVVTNIEPDHMETYNGSFEEMKQTYVNFLHNLPFYGLAVLCADDPVLEELMP 246

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + + ++G S+ AD+++  ++Q   +  +  +   G+ ++V+ +  G H A N 
Sbjct: 247 KV----GRQVITYGFSEKADYRIEDYQQTGFQGHYTVMTPSGERIDVLLNVPGRHNALNA 302

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM--- 353
              L +      + +  + AL+ F     R  +    +      ++ + Y  +P  +   
Sbjct: 303 TAALAVAKEEGIENEAILAALADFQGAGRRFDQLGHFIRPSGKVMLVDDYGHHPTEVAVT 362

Query: 354 -------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                       V+    PH   R   +  D  ++     +  +          I     
Sbjct: 363 IQAARQGWENKRVVMIFQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPI----- 417

Query: 407 SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINL 463
           +G    +L  ++     V   +    + L   +   L DGD+++   +   G   ++   
Sbjct: 418 AGADSRSLCRSIRNLGKVDPIFVSDHNQLGEILDQILQDGDLIL---AQGAGNVSKIARQ 474

Query: 464 LLEEF 468
           L E++
Sbjct: 475 LAEKW 479


>gi|296876961|ref|ZP_06901005.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
 gi|296431996|gb|EFH17799.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis ATCC 15912]
          Length = 449

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 138/389 (35%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      V  AL K          A L S A II ITGS GKTTT
Sbjct: 68  LLDEDFAVMVKNPGIPY-TNPMVEKALEKGIPVLTEVELAYLISDAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +   +   + +  + EL    L  I      
Sbjct: 127 TTMIGEVLTAAGQ----GGLLSGNIGFPASQVAQTATEKEVLVMELSSFQLMGIEAFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      E   +AK  + + + +   I LN++    + L  K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQDLAKELATKTKA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   ++ + +           G H  +N L T+ 
Sbjct: 239 RVLP----FSTIEKVDG------AYLEDGLLKFKGEVVMRADELGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  + + + +   + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKVRSVENEVIKETLSAFGGVKHRL---QYVDEIQGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            +S     + I + G     G    +   +L   +    +  + + G     +K A  + 
Sbjct: 340 ALSGFDNNKVILIAG-----GLDRGNEFDELVPHI--TGLKEMVILGESAPRVKRAADKA 392

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +    +  +             GDVV++
Sbjct: 393 GVPYVDAADVADATKKAFDLASPGDVVLL 421


>gi|125973556|ref|YP_001037466.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           thermocellum ATCC 27405]
 gi|158513249|sp|A3DE94|MURD_CLOTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|125713781|gb|ABN52273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           thermocellum ATCC 27405]
          Length = 466

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 119/387 (30%), Gaps = 53/387 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                 A I A+TGS GKTTT  ++   L               +IG+PL +      D 
Sbjct: 111 FFELCPAEIFAVTGSDGKTTTTTLIYNMLKEQGYKCWLG----GNIGIPLLSKIEEIKDT 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +        P++AV+T ++P HL     +EE  SAK  IF      
Sbjct: 167 DKVVLELSSFQLHTMTKS-----PNVAVVTNVSPNHLDVHKSMEEYVSAKKNIFRYQSAE 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN+D+        ++    +         K A  +         ++  E+      
Sbjct: 222 DRLVLNFDNDITREFAGEAKGDVVYFSRKTVLEKGAMLKDDMLVFRDGETETEIAKASDI 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +    H +         +      I   D D   K  + F   E R              
Sbjct: 282 VIPGVHNVENF------LAATAAVIDCVDRDVIRKVATTFTGVEHRI---ELVREINGVK 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A ++          G            G   +  +  L  V++   
Sbjct: 333 FYNDSIASSPTRTIAGLNSFKDKVILIAG------------GYDKKIPYDALGPVIAE-K 379

Query: 401 ISHVWLSGFHVLALKDALPRS---------IHVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
           +  + L G     ++  L            I +    +++            GDVV++  
Sbjct: 380 VKCLVLIGQTAPKIEKVLRDETERSGKGSDIPIKKCTSLEEAVKVAYRFASVGDVVILSP 439

Query: 451 SS-----------NSCGFYRLINLLLE 466
           +S               F  ++N +  
Sbjct: 440 ASASFDMFKNFEERGNRFKEIVNSIEA 466


>gi|4406514|gb|AAD20011.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces coelicolor A3(2)]
          Length = 142

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
             +L   +            + GI+ DSR++ P + + A+ G    G DF+  
Sbjct: 62  LAELADQLG--VAAPDGSAEITGITHDSRAVRPGDLYAALPGARLHGADFVTQ 112


>gi|229061518|ref|ZP_04198862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
 gi|228717752|gb|EEL69402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH603]
          Length = 450

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 128/381 (33%), Gaps = 45/381 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++ +     IP+  V +V  A +  A           + ITGS GKTTT  +    L
Sbjct: 85  SNPLLVAAKEKQIPI--VTEVELAYSISAAPF--------VGITGSNGKTTTTMLTFEML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                         N   V   +A++  + +  + EL    L  +       +P IA   
Sbjct: 135 KE---GQKYPVIAGNIGTVACEVAQLAKENEVVVTELSSFQLMGVE----SFQPKIAAFL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL      +E   AKA IF+   +T    +N DD+    L A  ++ G K ++S 
Sbjct: 188 NLFEAHLDYHGTKKEYGLAKANIFKNQTETDYSIINADDADVMALSA--YSKGKKVLFSA 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K       ++      +   +                G H  +N+L  + I  +L    
Sbjct: 246 TKIIEDGAYIKDNALYFKGEKVVKVSD-------IVLPGKHNLENILAAMSIAKLLGVSN 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +     L  F   + R                ++S   N  + + A+S  +Q      G 
Sbjct: 299 EAITAVLKSFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLAG- 354

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
                      G    +   DL       ++  +   G     L  A  ++    +   +
Sbjct: 355 -----------GLDRGNEFDDLIPYFK--HVKAIVTFGQTAPKLVRAAEKAGLDVIESVD 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           T+D   +   +   DGDV+++
Sbjct: 402 TLDDAVVKAYAHSTDGDVILL 422


>gi|237807301|ref|YP_002891741.1| UDP-N-acetylmuramate--L-alanine ligase [Tolumonas auensis DSM 9187]
 gi|259509784|sp|C4LA26|MURC_TOLAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237499562|gb|ACQ92155.1| UDP-N-acetylmuramate/alanine ligase [Tolumonas auensis DSM 9187]
          Length = 484

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 147/399 (36%), Gaps = 34/399 (8%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV+T +      + +     +  V  A   LA   R R     IAI G+ GKTTT
Sbjct: 78  GASVVVVSTAIHGDNPEVMAARELRIPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTT 133

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++    +        +            L     +   G     ++   E       +
Sbjct: 134 TSLIASVYAQAGADPTFVIGG--------LLNSAGTNARLGTSRYLIAEADESDASFLHL 185

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P +A++T I   H+  +     ++ +   E    L   G   +  DD     L  +   
Sbjct: 186 QPMVAIVTNIEADHMDTYGGDFTKLRATFLEFLHNLPFYGLAVVCIDDPVIRELLPEIGR 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTL 300
             I    ++G S++AD Q++++ Q   QS   ++   G  + +  +  G H A N   T+
Sbjct: 246 ATI----TYGYSEDADVQVQEFVQEGSQSQFRLRLQDGSFLPLRLNLPGRHNALNAAATV 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +        D  + AL+ F     R ++Y          L+ + Y  +P  ++A ++  
Sbjct: 302 AVALEDHIPTDAIVDALAQFAGVGRRFQQYGEFDTGAGKVLLVDDYGHHPTEVRATLAAT 361

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGFHVLALKDA 417
               P        VL         ++  + D AEVL+  ++     V+ +G   +   D 
Sbjct: 362 RAAWPER----RLVLVFQPHRYTRTRDLYDDFAEVLAKVDVLIMLDVYAAGEDPIPGADG 417

Query: 418 --LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
             L RSI         +  T   +   +   L DGDVV+
Sbjct: 418 RSLCRSIRQRGTLDPIFVATPAEVPGVLADVLKDGDVVL 456


>gi|119944904|ref|YP_942584.1| UDP-N-acetylmuramate--alanine ligase [Psychromonas ingrahamii 37]
 gi|189029023|sp|A1SU20|MURC_PSYIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119863508|gb|ABM02985.1| UDP-N-acetylmuramate--L-alanine ligase [Psychromonas ingrahamii 37]
          Length = 487

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/402 (16%), Positives = 139/402 (34%), Gaps = 40/402 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA +VVV+T + A    L         V  V  A   LA   R R     +A++G+ GKT
Sbjct: 78  GASVVVVSTAINADNPELLAAQQARIPV--VRRA-EMLAELMRYRHG---VAVSGTHGKT 131

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++       +     +            L     +   G     ++   E      
Sbjct: 132 TTTSLIASIYGQAQLDPTFVIGG--------LLNSAGTNAKLGQSRYLIAEADESDASFL 183

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++P ++V+T I   H+  +   E       + F    +    +        + +  +  
Sbjct: 184 HLQPMVSVVTNIEADHMDTY---EGNFEVLKDTFVRFIQNLPFYGTAVVCLDDAVIEQLI 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   ++G  + AD ++  + QC  +S     ++   +M++  +  G H A N    
Sbjct: 241 PRFARQTVTYGFHEQADVRISDFSQCVNRSEFSVHRINKPAMKIQLNLPGKHNALNAAAA 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      D  +  KAL+ F     R ++Y          ++ + Y  +P  ++A I  
Sbjct: 301 IAVAMEDDIDDFSISKALNEFAGIGRRFEQYGEFETGRGKAILVDDYGHHPTEVQATIDA 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SG 408
                P        V+         ++  + D A VL+   +  + L           +G
Sbjct: 361 ARAAWPDK----RLVMAYQPHRYTRTRDLYEDFAHVLAQ--VDQLLLLDVYAAGETPIAG 414

Query: 409 FHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +L   + +       +  + + L   +   + DGD+V+
Sbjct: 415 ADSRSLCRTIRQRSGKEPIFVASPEVLPAMLAQIIDDGDLVL 456


>gi|170728851|ref|YP_001762877.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella woodyi ATCC
           51908]
 gi|229620422|sp|B1KKX6|MURC_SHEWM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169814198|gb|ACA88782.1| UDP-N-acetylmuramate--alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 489

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 148/399 (37%), Gaps = 34/399 (8%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV+T + A    L       +  V  A   LA   R R     +A+ G+ GKTTT
Sbjct: 80  GADVVVVSTAIHADNPELLEAQALRIPVVRRA-EMLAELMRYRHG---VAVAGTHGKTTT 135

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++       ++    +     +            +  + I E   S    +      +
Sbjct: 136 TSLIASVYGQAERDPTFVIGGLLNS---AGTNARLGNSRYLIAEADESDASFLH-----L 187

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P ++VIT I   H+  +    E + S   +    L   G   +  DD     L      
Sbjct: 188 QPMVSVITNIEADHMDTYEGDFERLKSTFIDFLHNLPFYGIAVMCIDDPVVRELLP---- 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + I ++G S++AD Q   + Q   +S     +   + +EV+ +  G H   N L  +
Sbjct: 244 SVGRKIVTYGFSEDADVQALNFVQDGYRSRFTLRRTGVEDVEVMVNLPGEHNVLNALAAI 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S    + +  I+AL+ F     R ++  C        ++ + Y  +P+ + A I   
Sbjct: 304 AVASEDEIEDEAIIQALADFEGIGRRFEQLGCFDTDRGEVVLVDDYGHHPSEVAATIKAA 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD- 416
               P        V+         ++  + D  EVLS  +      V+ +G   +   D 
Sbjct: 364 KLGWPEK----RLVMIYQPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYSAGEAAIPGADS 419

Query: 417 -ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
            AL RSI +       +    + L   +   L +GD+++
Sbjct: 420 RALCRSIRLRGQLDPIFVADQEQLLTLLPDVLQEGDLLL 458


>gi|324993410|gb|EGC25330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK405]
 gi|324995278|gb|EGC27190.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK678]
 gi|325697065|gb|EGD38952.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK160]
 gi|327461684|gb|EGF08015.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1]
 gi|327469030|gb|EGF14502.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK330]
 gi|327489537|gb|EGF21330.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1058]
          Length = 459

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 123/346 (35%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + + + A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASHTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A     +    +  +        +    GD+V++
Sbjct: 385 VILGQSAARVKRAADLAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|148244846|ref|YP_001219540.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326673|dbj|BAF61816.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 432

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 133/380 (35%), Gaps = 46/380 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +V      +IP+  V D+    ++ A       KA +I ITGS GK+T  ++LT  +
Sbjct: 74  SETIVGWAMKKNIPI--VSDI-ELFSRFA-------KAPVIGITGSNGKSTVTKLLTQMI 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +      A       +IG+P     +   +++ + EL    L       + +     V+ 
Sbjct: 124 ADSGMLVAIG----GNIGIPALDC-LNEKIEYYVLELSSYQLDYS----YHLNLITGVVL 174

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  +S  E    +K  +++  + +                 +        +  F
Sbjct: 175 NITPDHLDRYSSFEYYIHSKLSLYQYCQYSVVN------------LDEPLIPKQTNVKYF 222

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +            C    ++               IG H  +N+L  L +   +   +
Sbjct: 223 GINIPKRANDFGTVTCHNICYLLKGNNTLMSVDEVQLIGEHNTKNILAALALGDQIKLPI 282

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            + I+++  F   E R       + +      ++S   N  S   AI  L     +    
Sbjct: 283 SSMIQSIKNFKALEHR---LEWVIKKQNIDYYNDSKATNAISTIIAIQTLMYKHQN---- 335

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SET 429
            + +LG     G   +  +  L + ++   I+ V L G         +  +  ++  + T
Sbjct: 336 IVLILG-----GIAKKEDYTLLFKFINK-GITGVVLIGQSTRQFLQEINTNSIIYANTNT 389

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M       +S + +G V+++
Sbjct: 390 MQEAVNIARSMISNG-VILL 408


>gi|121635446|ref|YP_975691.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Neisseria
           meningitidis FAM18]
 gi|158513150|sp|A1KVL5|MURD_NEIMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120867152|emb|CAM10919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis FAM18]
          Length = 445

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/410 (15%), Positives = 123/410 (30%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRGDGVQ 217

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                G +  +   + +   +  R+  +  + +   +  +   
Sbjct: 218 VLNADDAFC-------RAMKRAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATKDIP 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           ++ +H+      A  +   +G+      +     +             R      +    
Sbjct: 271 LQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQG---------LPHRVEKIGKKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +     D+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCGLNMTDCATLEEAVQTAYAQAEACDIVLL 418


>gi|241760241|ref|ZP_04758337.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
 gi|241319352|gb|EER55817.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Neisseria
           flavescens SK114]
          Length = 445

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 122/410 (29%), Gaps = 46/410 (11%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +   L R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAELQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         +RP  A +  I+  HL  +  + + A  K +IF G    
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKDKIFRG---- 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       ++L A                  +      +    E   ++   +   
Sbjct: 214 ---------DGVQVLNADDVFCHAMKRAGREVKWFSLEHKADFWLERETGRLKQGNEDLI 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N++  + +   +    +  ++ +  F     R         +    
Sbjct: 265 ATQDIPLQGLHNAANVMAAVALCEAVGLPREALLEHVKTFQGLPHRV---EKIGEKNGVV 321

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +  AAI+ L             +LG M +  + +               
Sbjct: 322 FIDDSKGTNVGATAAAIAGLQ-------NPLFVILGGMGKGQDFTP------LRDALAGK 368

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              V+L G     ++  L    +++    T++       +    GD+V++
Sbjct: 369 AKGVFLIGVDAPQIRRDLDGCDLNMTDCATLEEAVQTAYAQAEVGDIVLL 418


>gi|260434604|ref|ZP_05788574.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
 gi|260412478|gb|EEX05774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Synechococcus sp. WH 8109]
          Length = 497

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/484 (14%), Positives = 130/484 (26%), Gaps = 57/484 (11%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFI---------- 57
           H LL+         +    +  I+ DSR + P   F  + G   DG  F           
Sbjct: 2   HALLRDAGIAVPPGLVNPGLEAITTDSRRVGPGTLFLGLPGERVDGGSFWAQALEAGAAA 61

Query: 58  ---------------LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                                   +VV+   +   IG LS   +        L  +    
Sbjct: 62  AVIGAAAAAAKPPAADD------PVVVIQESVARRIGELSAAYWDHPCRRMVLIGVTGTN 115

Query: 103 RLRSKATII-AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
              +   +I  +  S G++    +    ++                              
Sbjct: 116 GKTTTTHLIEHLAASTGQSV--GLFGTLVNRWPGHSITATHTTAFADRLQGQLAEAASAG 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL---E 218
             +  + +S     +      R   AV T +   HL   + +E+   AKA +F       
Sbjct: 174 CCLAAMEVSSHALAQQRVAGCRFAGAVFTNLTQDHLDYHASMEDYFEAKASLFADPLLLA 233

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N DD +   L  +   LG     S  +  +A+  +   +  +      +    
Sbjct: 234 DGVRSVVNSDDPWGARLAER---LGAACWRSSLEDPSAELHMSDLQMTAAGVEGRLISPA 290

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                    +G     N+L  +G++      +   ++A+  F    GR    R  LN   
Sbjct: 291 GEGRFRSPLLGRFNLMNLLQAVGVLLQQQLPLPVLLEAIGRFGGVPGR--MERVILNGVD 348

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +         +     + LS   P   GR I V G     G             ++ 
Sbjct: 349 AVNLPPVLVDYAHTPDGLDNALSAARPFCTGRLICVFG----CGGDRDRGKRPQMAAIAA 404

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                V ++  +            +   +P    +              +     D+V+V
Sbjct: 405 RLADRVVVTSDNPRTEDPQRILDDVVAGIPAGSDLLVEGDRAKAIASAIAEAEPDDLVLV 464

Query: 450 --KS 451
             K 
Sbjct: 465 AGKG 468


>gi|268318243|ref|YP_003291962.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
 gi|262335777|gb|ACY49574.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodothermus
           marinus DSM 4252]
          Length = 455

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 116/383 (30%), Gaps = 41/383 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A       +A I+A+TG+ GKTTT  ++        +          +IG P +   +
Sbjct: 100 EVASWF---CRAPIVAVTGTNGKTTTTSLIGYIFRRAGRR----TIVAGNIGYPFSDYVL 152

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E+    L  +       RP ++V+  I P HL  ++      +       
Sbjct: 153 DTTPDDVVVLEVSSFQLDHVA----TFRPRVSVLLNITPDHLDRYNYNFNEYAQSKFRIF 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++   + +   D     + A+               +         +       +E Q
Sbjct: 209 ANQRGEDVLVYNHDDELIRMAAERAHRKRGLRVLGFSQRTELPAGAFVRDGYLILRIEQQ 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H   N L       ++    D   ++L+ F     R         
Sbjct: 269 EEVLMHANELALRGRHNLYNSLAAAVAARVMEVRNDVVRESLASFEGVPHRL---EFVRE 325

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +++S   N  ++  A+   S       G            G    + +  + + 
Sbjct: 326 LDGVRYVNDSKATNVNAVWYALESFSCPIVLIAG------------GRDKGNDY-SVLKP 372

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           L    +  +   G     L   L   + H   +++M+    + +     GDVV++    +
Sbjct: 373 LVKEKVRALVAIGESADKLLRELGPLVPHAVKAQSMEEAIQYARVFAEPGDVVLLSPACA 432

Query: 452 S---------NSCGFYRLINLLL 465
           S             F RL+  L 
Sbjct: 433 SFDMFENYEDRGDTFRRLVMSLQ 455


>gi|188527417|ref|YP_001910104.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
 gi|188143657|gb|ACD48074.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Shi470]
          Length = 470

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+ K+ L   L +   T+A   S N  +G+       +    D  I 
Sbjct: 144 NLKVIAITGSFGKTSIKKFLLQILQTTFNTHASPKSVNTLLGLANDINQNLDDRSDIYIA 203

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 204 EAGARNKGDIKEITHLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 258

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +   +        YS          ++  +   + +  E+ +         
Sbjct: 259 KAFCYSVEKINPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 310

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 311 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 366

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 367 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 418

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 419 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 462


>gi|167764158|ref|ZP_02436285.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
 gi|167698274|gb|EDS14853.1| hypothetical protein BACSTE_02542 [Bacteroides stercoris ATCC
           43183]
          Length = 444

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 115/373 (30%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGNSLALQVAMEKHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   +++   AK  I +          
Sbjct: 157 LSSFQLD----NMYKFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD        K         ++  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIRRELEKHGLKAHPYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQE-----EL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALRGTHNLYNSLAAGISANLAGIRKEDIRKALSDFKGVEHRL---EKVATVRGVQFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E L     S + 
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEI-EDLVRSKCSALV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G H   L     R  + V   +T M             G+ V++    +S        
Sbjct: 372 YLGLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFKLARKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKYVREL 444


>gi|71734389|ref|YP_276232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|118595674|sp|Q48EF6|MURD_PSE14 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71554942|gb|AAZ34153.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|320322452|gb|EFW78545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330079|gb|EFW86066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330874996|gb|EGH09145.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 448

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 117/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF      + + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLLEENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|50955154|ref|YP_062442.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648714|sp|Q6AE59|MURE_LEIXX RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|50951636|gb|AAT89337.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 514

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/472 (15%), Positives = 156/472 (33%), Gaps = 41/472 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              L+        G +    V G ++ S ++ P + +  + G +  G  +   A + GA 
Sbjct: 19  LAQLVALFGLDVRGDLDGVEVTGAALASSAVEPGDLYVGVPGRNAHGAAYAAAAAEAGAV 78

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKE 124
            V+ + D      +  +P+    D   AL  +A          AT+  +TG+ GKT+   
Sbjct: 79  AVLTDGDGADLAAAAGLPIVVTADPRAALGAVAAWIHRTEDNAATLFGVTGTNGKTSVVY 138

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARM--PVDVDFGIFELGMSHLGEIR------ 176
           +L   L  +        +    IG     + +  P   +       M   G         
Sbjct: 139 LLYAILGQLGIVAGLTSTAERRIGEHAITSTLTTPEATELHALLARMREEGVRAAAIEVS 198

Query: 177 ------FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +   +A  T ++  HL +++ + +  +AK E+F+  ++     +  D  
Sbjct: 199 AQALSRHRVDGIEFDVAGFTNLSHDHLDDYTAMPDYFAAKLELFQ-PDRARRGVVTVDSE 257

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           +   L  +S           G   +    + +       ++      G+ +E     +G 
Sbjct: 258 WGHRLVEQSRIPVTTLSSVAGSEADWRVTVLEETLART-AFALEGPGGRLLETSVPLLGA 316

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESYNA 348
           + A N  + + ++     D+D    AL           G+  R + ++G    ID  +  
Sbjct: 317 YNASNAALAIVMLVESGYDLDAIGAALERDGGIDAYIPGRAERLSGDRGPVVFIDYGHTP 376

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  S       L+ +     GR + V G     G+   +   ++  + +      V ++ 
Sbjct: 377 DAFSS-----TLAALRRVTAGRIVMVFGA---DGDRDITKRAEMGAIAAR-GADAVVITD 427

Query: 409 -----FHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVV 448
                     ++ AL            ++        F    S   +GDVV+
Sbjct: 428 FHPRWEDPATIRAALLEGARNAVPERDLYEVPDPRTAFRTALSLAGEGDVVL 479


>gi|319638325|ref|ZP_07993088.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
 gi|317400598|gb|EFV81256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa C102]
          Length = 458

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 113/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+   +   +   S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 79  VIEAILNKGLPYTSGPQWLAENVL-------------HQHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  A++  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAILNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQETLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   R     ++ S+           V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EQGWRVGTVHADGSFDVCHHGETVGHVAWELMGEHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL     V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKA------------ALPASLKGADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  +     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGKLHVGKDFNAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALK 458


>gi|218258175|ref|ZP_03474577.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225698|gb|EEC98348.1| hypothetical protein PRABACTJOHN_00231 [Parabacteroides johnsonii
           DSM 18315]
          Length = 453

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 105/345 (30%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 110 DAKMICITGSNGKTTTTMLTYHILRQAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  +  IA++  I P HL  ++  ++    AK  I +          
Sbjct: 166 LSSFQLD----NMYDFKADIAILLNITPDHLDRYNYEMQNYVDAKFRILQNQTAEDAFIF 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H       ++              K   E S     ++    + + 
Sbjct: 222 WNDDPIIAREIAKRHPEATLYPFAETHEAGVKGYTEDKKIRIETSNGTFTME----QDLL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L +     ++    +    +LS F   E R               I++S
Sbjct: 278 ALSGTHNLYNSLASGIASKLVDIHDENLRASLSDFTGVEHRL---EKVARVRGVDYINDS 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E L    +  + 
Sbjct: 335 KATNVNSCWYALQSMTT-------PLVLILG-----GTDKGNDYSEI-EELVKKKVHALI 381

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + V   + +M+            GD V++
Sbjct: 382 FLGVDNTKLHAFFDGKVPVIEDARSMEEAVSKAYKLAEKGDTVLL 426


>gi|152976274|ref|YP_001375791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|189082871|sp|A7GRN8|MURD_BACCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|152025026|gb|ABS22796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 451

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 127/389 (32%), Gaps = 41/389 (10%)

Query: 69  VVNTDMVASIGSLSIPV---FGVDDVLG---ALNKLAVAARLRSKATIIAITGSVGKTTT 122
           ++  ++   + +  IP      V         + ++ +A R+ S+A  I ITGS GKTTT
Sbjct: 68  LLERNIALVVKNPGIPYSNPLLVAATEKQIPIITEIELAYRI-SEAPFIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +    L              N   V   +A+     +  + EL    L  +       
Sbjct: 127 TMLTFEMLKE---GEKHPAIAGNIGTVACEVAQAAKANEVLVTELSSFQLMGVE----TF 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA    +  AHL      +E   AKA IF+         +N DD+    L A S   
Sbjct: 180 QPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTAADYSVINADDADVMELSANSKGQ 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I    +         +  +   C +++ +  + +           G H  +N+L  + I
Sbjct: 240 KILFSTT---------KEIEDGACIKENALYFKGEKVVEIKDIVLPGKHNLENILAAMSI 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L    +  +  L  F   + R                ++S   N  + + A+S  + 
Sbjct: 291 AKLLGVANEAIVAVLKRFTGVKHRL---EYVTTIHNRKFYNDSKATNILATEKALSAFTS 347

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                 G            G    +   DL       ++  +   G     L  A  ++ 
Sbjct: 348 PVILLAG------------GLDRGNEFDDLIPYF-EQHVKAIVTYGQTAPKLVHAAEKAG 394

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +     ++       +   DGDV+++
Sbjct: 395 LAIIEAVHHLEEAVERAYAHSADGDVILL 423


>gi|325510600|gb|ADZ22236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum EA 2018]
          Length = 462

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 117/386 (30%), Gaps = 57/386 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
                 A I  +TGS GKTTT  ++   L               +IG PL      V   
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVG----GNIGTPLFSKIKEVSTK 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T ++P HL     +EE  +AK  IF    K 
Sbjct: 168 DKVVLELSSFQLMTIDVS-----PEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKG 222

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N D+     +++++               + + +++     ++Q       + K 
Sbjct: 223 NVLIINRDNEITNNMESEALGD--------LLKFSRNEKVKNGAYYNKQDGNIYLFENKI 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  I         M            ++ IK    F   E R              
Sbjct: 275 CNKDDIKIKGMDNVENFMAAFCAVSKDVSKESMIKVAMNFAGVEHRR---EFVRELDGVK 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P    + ++   +      G          + E G                
Sbjct: 332 YYNDSIASSPTRTISGLNAYERPVILIAGGYDKHIPFEPLAEKGYD-------------- 377

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K+   +        + +  S+ ++      +    +GD+V +  
Sbjct: 378 -KIKVLILMGATKNKIKETFDKVICEKNIKLPIILSDNLEEAVCEAKKVATNGDIVTLSP 436

Query: 450 -KSS---------NSCGFYRLINLLL 465
             +S             F  ++N L 
Sbjct: 437 ACASFDSFPNFEVRGNKFKEIVNNLK 462


>gi|42046|emb|CAA35611.1| unnamed protein product [Escherichia coli K-12]
          Length = 438

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVTATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  + +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALARVALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|291550011|emb|CBL26273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus
           torques L2-14]
          Length = 457

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 105/346 (30%), Gaps = 40/346 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            K YA       +IG P T   +   +    + E+    L          RP ++ I  I
Sbjct: 137 MKNYAQSSFVVGNIGNPYTSIALQTREDSVIVAEMSSFQL----ETIQTFRPKVSAILNI 192

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL+    +E    AK  I +   +  T  LNY+D   ++      +  +        
Sbjct: 193 TPDHLNRHHTMEAYIEAKENIAKNQTEKDTCVLNYEDDVTKVFGENVKSKVLYFSSQRIL 252

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +    +  +           V           + +G H  +N +   G+ +     VD 
Sbjct: 253 EEGIYLENGQIVLAMNGEKTPVCH-----VDELNILGTHNHENAMAAAGMAAAYGVPVDV 307

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             + L  F   E R         +      ++S   NP +    I  +++ +    G   
Sbjct: 308 IRRTLKEFQGVEHRI---EYVAEKNGVVYYNDSKGTNPDAAIKGIQAMNRPTVLIGG--- 361

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETM 430
                    G    S + +  +      +  + L G     + +         +  ++T 
Sbjct: 362 ---------GYDKDSAYDEWIDSFD-GKVKKLVLLGATRDKIAETARAHGFEDIEMADTF 411

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +  F     +   GD V++    +S             F  L+N L
Sbjct: 412 EEAFAKCVENAKPGDAVLLSPACASWGMFKNYEERGDKFKELVNNL 457


>gi|327479641|gb|AEA82951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri DSM 4166]
          Length = 447

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 124/381 (32%), Gaps = 45/381 (11%)

Query: 94  ALNKLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           AL + A                +KA I+AITGS  K+T   ++    ++  +T     + 
Sbjct: 84  ALQEAAARGVKLSGDIELFAREAKAPIVAITGSNAKSTVTTLVGEMAAAAGRTV----AV 139

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +  +VD  + EL    L         +   +A    I+  H+  +SG+
Sbjct: 140 GGNLGTPALDL-LADEVDLYVLELSSFQLETTE----QLNAEVATCLNISEDHMDRYSGL 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
                AK  IF G  +             +   ++         ++FG  K  DF+    
Sbjct: 195 PAYHQAKHRIFRGARQVVVNR--------DDRLSRPLVGEDVPTWTFGLGKP-DFKGFGL 245

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +   + ++  Q +           G H   N L  L +   +       +  L  F   
Sbjct: 246 FEEKGEKYLAFQFEALMPVRELKMRGAHNQSNALAALALGHAVGLPFGPMLDTLRRFTGL 305

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +   +  D+S   N  +    ++ +  +    +G+ + + G   + G 
Sbjct: 306 PHRC---QWVGERAGVSYYDDSKATNVGAA---LAAIEGLGADIDGKLVLIAGGDGK-GA 358

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
              +    +A          V L G     L +AL  +  +    +++            
Sbjct: 359 DFSALRAPVARYCRA-----VVLLGRDAPRLAEALGEATVLIRVASLEEAVQRAAECAES 413

Query: 444 GDVVVV---KSSNSC--GFYR 459
           GD V++    +S      F  
Sbjct: 414 GDAVLLSPACASLDMFKNFEE 434


>gi|88799425|ref|ZP_01115002.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
 gi|88777735|gb|EAR08933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Reinekea sp.
           MED297]
          Length = 463

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 123/413 (29%), Gaps = 49/413 (11%)

Query: 65  AGL-VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   V+V +  V              D    L+             +IAITGS  K+T  
Sbjct: 86  ASADVLVMSPGVPLADPAIKKAL---DQGVQLSSDIELFLSEFNGKVIAITGSNAKSTV- 141

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
              T  L    K          +IG+P+         D  + EL    L  +  +     
Sbjct: 142 ---TAWLGEALKAGGQKTLVAGNIGIPVLETD-HAAYDVAVLELSSFQLELLSRVNA--- 194

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA +  I+  H+  +  +     AK +I+ G         +               + 
Sbjct: 195 -DIACVLNISEDHMDRYETLAHYVQAKQKIYFGAASVLYNRSDALTQPL---------VP 244

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              +     S   D      ++     W+                G H   N L  L + 
Sbjct: 245 DHVLKRTFASDAPDLNHYGLRKQDGNEWLAQGFDLVLPVSEVALPGGHNVMNALAVLALA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +   D    + AL+ F     R    +    +   T I++S   N  S  AA+  L  +
Sbjct: 305 DMAGNDRSATLTALTSFSGLPYRC---QAIRERAGITFINDSKATNVGSTTAALEGLVSV 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                G  I +L      G+        LAEV+       V+  G         L  +  
Sbjct: 362 R----GANIHLLAG----GQAKDQDLSPLAEVIEQT-CKQVYAFGQDRQQF---LALTDR 409

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
               ET+   F    ++  +GD+V++    +S             F +L+  L
Sbjct: 410 AVECETLSEAFAKANANAQEGDIVLLSPACASFDQFENFEHRGQQFNQLVGAL 462


>gi|317182049|dbj|BAJ59833.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F57]
          Length = 493

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 130/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    YA   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVYASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKTQLENILQATTIQGDLILF 485


>gi|319791666|ref|YP_004153306.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
 gi|315594129|gb|ADU35195.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus EPS]
          Length = 735

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 101/378 (26%), Gaps = 28/378 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELG 168
           ++A+TG+ GKTT   +    +    K+ A  G+     +             D  + EL 
Sbjct: 345 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHIDAETLPDVWVLELS 404

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY- 227
              L           P  A +  +   HL     +   A+AKA IF           +  
Sbjct: 405 SFQLD----GVQGFEPTAATVLNLTQDHLDWHGDMPAYAAAKARIFGAKGLMILNRDDAG 460

Query: 228 -DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   ++ K     I+T  +FG +          +         V+           
Sbjct: 461 VMAMLPPPVRVKLQRPQIRTHVTFGSAMPLRPGDYGIE-RINGIGWLVRALEADETQKRK 519

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  +     L     L                           +  G      E +
Sbjct: 520 RGAVVEEEIFFQRLMPADALRIRGRHNAMNALAALALATAADCPLGPMLYGLREYRGEPH 579

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFHIDLAEVLSLY 399
              P ++   +           G  +A L  + E       +G   +    +        
Sbjct: 580 RVEPIALIDDVEYFDDSKGTNVGATVAALNGLGEDRRVVVILGGEGKGQDFEPLAAPVAQ 639

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +   V L G     ++ AL    + + ++ +MD       +    GD V++    +S   
Sbjct: 640 HARAVVLIGRDAPLIEAALANTGVSLMHAASMDEAVKLAAARANPGDAVLLSPACASFDM 699

Query: 453 ------NSCGFYRLINLL 464
                  +  F  ++  L
Sbjct: 700 FKDYEHRAEVFREVVQAL 717


>gi|330895229|gb|EGH27567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 448

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 118/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  +V+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDEVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  ++G+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMSVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S              +     L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG------LRAPVAKHCRAAVL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+           + GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|331268360|ref|YP_004394852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
 gi|329124910|gb|AEB74855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum BKT015925]
          Length = 458

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/384 (17%), Positives = 117/384 (30%), Gaps = 57/384 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A +  ITGS GKTTT  ++   L S        G+  N +             D
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSEGYKTWVGGNIGNPL---FANIEEMTKAD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+   +      A++T ++P HL     +EE   AK  IF+   +  
Sbjct: 168 KVVLELSSFQLMTIKEDMNC-----ALVTNLSPNHLDIHKDMEEYVDAKKNIFKYQNEND 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D+     L  +  A G    +S  +  +     +  K            +    
Sbjct: 223 LLVLNKDNKITNDLVNE--AKGKVKQFSIKEEIHNGAYFKNDKLFI-------LDKEVCA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L    +V+   +  +    A+S      G   R            
Sbjct: 274 LEEIKLKGMHNVENLLAAFCLVNEDVSINNMRKVAISFT----GVEHRCEFVRELDGVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++S  ++P    A +    +      G          + E G                 
Sbjct: 330 YNDSIASSPTRTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEGYD--------------- 374

Query: 400 NISHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            I  + L+G     +K A        P  I ++  E  +      +     GD+V +   
Sbjct: 375 KIKALILTGVTKEKIKKAFDNVIENKPYKIPIYMVERFEEAIYKAKEISKAGDIVTLSPA 434

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F  ++N L
Sbjct: 435 CASFDMFANFEIRGNKFKDIVNNL 458


>gi|134302471|ref|YP_001122441.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|158513856|sp|A4IZG9|MURD_FRATW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134050248|gb|ABO47319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 416

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 119/393 (30%), Gaps = 70/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                                                +            D         
Sbjct: 187 KQ---------------------------------SKLNLAKFSNDFFVYDVHNGIKYAG 213

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q       +  +  +           N+   + +++IL        +A++     +G 
Sbjct: 214 EYQIIRGAIYRNSTKLLDIVETKLFGEHNLENIIVVLNILDRLGLDINQAIASIKKFKGL 273

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 274 EHRCKIVKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 329 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 382

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 383 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 415


>gi|15896442|ref|NP_349791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           acetobutylicum ATCC 824]
 gi|30316107|sp|Q97EB9|MURD_CLOAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15026265|gb|AAK81131.1|AE007815_1 UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           acetobutylicum ATCC 824]
          Length = 462

 Score = 64.9 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 117/386 (30%), Gaps = 57/386 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
                 A I  +TGS GKTTT  ++   L               +IG PL      V   
Sbjct: 112 FIKYCPAKIFGVTGSDGKTTTTTLIYNMLKEEGYKTWVG----GNIGTPLFSKIKEVSTK 167

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T ++P HL     +EE  +AK  IF    K 
Sbjct: 168 DKVVLELSSFQLMTIDVS-----PEVAVVTNLSPNHLDIHKNMEEYINAKKNIFTHQSKG 222

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N D+     +++++               + + +++     ++Q       + K 
Sbjct: 223 NVLIINRDNEITNNMESEALGD--------LLKFSRNEKVKNGAYYNKQDGNIYLFENKI 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  I         M            ++ IK    F   E R              
Sbjct: 275 CNKDDIKIKGMDNVKNFMAAFCAVSKDVSKESMIKVAMNFAGVEHRR---EFVRELDGVK 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P    + ++   +      G          + E G                
Sbjct: 332 YYNDSIASSPTRTISGLNAYERPVILIAGGYDKHIPFEPLAEKGYD-------------- 377

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K+   +        + +  S+ ++      +    +GD+V +  
Sbjct: 378 -KIKVLILMGATKNKIKETFDKVICEKNIKLPIILSDNLEEAVCEAKKVATNGDIVTLSP 436

Query: 450 -KSS---------NSCGFYRLINLLL 465
             +S             F  ++N L 
Sbjct: 437 ACASFDSFPNFEVRGNKFKEIVNNLK 462


>gi|149371575|ref|ZP_01890991.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
 gi|149355202|gb|EDM43762.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [unidentified eubacterium SCB49]
          Length = 444

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 114/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            AT++ ITGS GKTTT  +    L           +   +IG            +  + E
Sbjct: 102 DATVVGITGSNGKTTTATLTFELLKEELNV-----ALGGNIGKSFAEQVSEEKYNNFVLE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L  I+       PHIAV+T ++P HL  +    ++  ++K  I     +      
Sbjct: 157 LSSFQLDGIKDFA----PHIAVLTNLSPDHLDRYEYDYDKYIASKFRITMNQTEEDYFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           + DD       +       K  +S  +  +    ++  +                     
Sbjct: 213 DADDEEITKWMSVHEIKAKKLPFSLKQKFDEGAYIKDNQIVI----TINNTHFTMSIAAL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +    + ++L     T  ++L  F   E R       +  G    +++S
Sbjct: 269 GLKGQHNVKNAMAATTVATLLKIRKATIRESLENFQGVEHRL---EKVVKIGNVLYVNDS 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++  +    G            G    + + DL  +++   +  + 
Sbjct: 326 KATNVNATYYALDSMTSPTVWIVG------------GVDKGNNYEDLLPLVNE-KVKAII 372

Query: 406 LSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     +       + +   + +M              D V++    +S         
Sbjct: 373 CLGVDNQKIISQFGNVVDMMVEASSMAEAVKVAYKLSERNDTVLLSPACASFDLFENYED 432

Query: 453 NSCGFYRLINLL 464
               F   +  L
Sbjct: 433 RGRQFKEAVRNL 444


>gi|330981219|gb|EGH79322.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 448

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 120/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  +V+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDEVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  ++G+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYNGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFNGFGLREENGEKYLAFQFENLMSVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S      +A+           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG-LRAPVAKYCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+           + GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLVRVDTVQAAVEHSAKLALRGDAVLL 420


>gi|325977740|ref|YP_004287456.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325177668|emb|CBZ47712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 452

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 86  DNPMVARAIEKNIPVI-------TEVELAYMI---SDAPIIGITGSNGKTTTTTMIAETL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L           PHIAVI
Sbjct: 136 NN----GGKSGLLSGNIGFPASEVAQTATDKDILVMELSSFQLMGTD----TFHPHIAVI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I + +     + LN++    + L  K+ A  +    +
Sbjct: 188 TNLMPTHIDYHGTFEEYVAAKWNIQKNMTADDFVVLNFNQDLAKELAQKTAAQVVPFSTT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ +  +    
Sbjct: 248 ----------EKVDGAYLDGDTLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIA 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   + L+ F   + R    +           ++S + N  +          +S     
Sbjct: 298 NDAIKETLTHFGGVKHRL---QALGGINGVKFYNDSKSTNILA------TQKALSGFDNS 348

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  + ++    ++
Sbjct: 349 KVILIAG-----GLDRGNEFDELVPDI--TGVKLMVILGESAPRVKRAADKANVPYVDAK 401

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 402 DVADAARIAYDKAEAGDVVLL 422


>gi|269926713|ref|YP_003323336.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790373|gb|ACZ42514.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 474

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 123/393 (31%), Gaps = 44/393 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            +  +       IPV         L ++ +  R    A I AITGS GK+TT   L    
Sbjct: 92  ESKWLELARENGIPV---------LMEMNLFWR-YCPAPITAITGSKGKSTTTSWLGHIS 141

Query: 131 SSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              +      G+        +P      PV ++   ++L    +G          PH++ 
Sbjct: 142 KLWRPDTVVAGNLRVSALSMLPQISEDTPVILELSSWQLEAFEVGGEA-------PHVSC 194

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I+  HL+ +   E   ++K  I+   + T     NYDD           A       
Sbjct: 195 ITNISYDHLNRYPSFEAYYNSKRWIYRNQKTTDYAVFNYDDPIVSRFVEDCLAQVRWFSR 254

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S                  E       LQ           G H   N L    + S +  
Sbjct: 255 SSHVKPGGYIDNDYIYLVDETGSTRKLLQVH----ELQLPGEHNRMNALAAAVLASAMNI 310

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  ++ L  F     R               I+++ +  PAS  AA+  +       E
Sbjct: 311 PDEFIVEGLRTFKGLPDRL---ELVSVIDGVKYINDTTSTVPASTIAALKAV-------E 360

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VH 425
           G  + + G     G        +LA+ +    +  V L G     L+ A+ +      V 
Sbjct: 361 GEVVLLAG-----GASKNVPFDELADFICQKKVRVVLLEGSATADLQTAINKRCPELIVG 415

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
              +++      +S    G  V++    +S   
Sbjct: 416 TFSSLESALEAARSVARPGHTVLLSPACASFGM 448


>gi|157373552|ref|YP_001472152.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
 gi|189082501|sp|A8FQA1|MURC_SHESH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157315926|gb|ABV35024.1| UDP-N-acetylmuramate--alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 489

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 145/399 (36%), Gaps = 34/399 (8%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV+T + A    L       +  V  A   LA   R R     +A+ G+ GKTTT
Sbjct: 80  GADVVVVSTAISADNPELLEAQALRIPVVQRA-EMLAELMRYRHG---VAVAGTHGKTTT 135

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++       ++    +     +               + I E   S    +      +
Sbjct: 136 TSLIASVYGQAERDPTFVIGGLLNS---AGTNARLGHSRYLIAEADESDASFLH-----L 187

Query: 183 RPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P ++V+T I   H+  +    E++ S   +    L   G   +  DD     L  K   
Sbjct: 188 QPMVSVVTNIEADHMDTYEGDFEKLKSTFIDFLHNLPFYGVAVMCIDDPVVRELLPKV-- 245

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              + I ++G S++AD Q   + Q +  S     +   + MEVV +  G H   N L  +
Sbjct: 246 --GRKIVTYGFSEDADVQALNFVQEAYLSRFTLRRAGVEDMEVVVNLPGQHNVLNALAAI 303

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + +    D    I+AL+ F     R ++  C        ++ + Y  +P+ + A I   
Sbjct: 304 AVATEDEIDDAAIIQALADFQGIGRRFEQLGCFDTNKGEMVLVDDYGHHPSEVAATIKAA 363

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HV 411
               P        V+         ++  + D  EVLS  +      V+ +G         
Sbjct: 364 KAGWPEK----RLVMVYQPHRYSRTRDLYDDFVEVLSQVDCLLLLDVYAAGESPVPGADS 419

Query: 412 LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            AL  ++ +   +   +    + L   +   L  GD+V+
Sbjct: 420 RALCRSIRQRGQLDPIFVSDSEQLLSLLPDVLQAGDLVL 458


>gi|116618590|ref|YP_818961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271210|sp|Q03W34|MURD_LEUMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116097437|gb|ABJ62588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 449

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 123/381 (32%), Gaps = 47/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +V     L+IP+    +V  AL+             +IA+TGS GKTTT  ++   L
Sbjct: 84  DHPLVQKAEKLNIPIL--TEVEIALS--------TFNGRLIAVTGSNGKTTTTSLIRDML 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +  +          +IGVP++         D  + EL    L  +      ++P IA++
Sbjct: 134 KADGQNV----ITAGNIGVPVSEVVFDLTREDTLLLELSSFQLLGL----PDIQPDIALV 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL          +AK  I         + LN D    E  K ++ A  ++   +
Sbjct: 186 TNIFSNHLDYHKTRANYVAAKFRITRHQNANQYLVLNADGQDTEKFKNETEAQVLEFSRT 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      + +        + +  +          +G H  +N+L  + + ++    
Sbjct: 246 ----------KQHFPVAFSNGNLTLTDEIVMPTKDIKLVGPHNQENILAAVTVANLAGVS 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F     R    +     G     ++S   +  + + A+            
Sbjct: 296 KPAIREVLKTFSGVAHRL---QYLFTAGDVKYYNDSKATDIEATQTALDSFDC------- 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
                +G   E G+  +        + +L N+  V   G     +          V    
Sbjct: 346 -PTIWIGGGLERGDDLERL------LPNLKNVKAVIAVGETQQKIVTLAREAGKPVIAVT 398

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            ++            GDVV++
Sbjct: 399 DVEHAAPVAVQLASPGDVVLL 419


>gi|189464537|ref|ZP_03013322.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
 gi|189438327|gb|EDV07312.1| hypothetical protein BACINT_00879 [Bacteroides intestinalis DSM
           17393]
          Length = 444

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 119/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 NAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVATDQHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQNQTPEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIKRELDKHGLRAHLYPFSAVKEDGAIAYVEDGEVEINEPIAFNMEQE-----KL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++   + +   +ALS F   E R               I++S
Sbjct: 268 ALQGTHNLYNSLAAGISANLAGIEKEYIRRALSDFKGVEHRL---EKVATVRGVEFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  +         + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMKT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L D   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHDFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCCASFDLFSSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKCVREL 444


>gi|139473454|ref|YP_001128170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes str. Manfredo]
 gi|158512776|sp|A2RDK9|MURD_STRPG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134271701|emb|CAM29934.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes str. Manfredo]
          Length = 452

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 133/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPLLTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q            +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLNDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|19746474|ref|NP_607610.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS8232]
 gi|50914620|ref|YP_060592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10394]
 gi|30316063|sp|Q8P063|MURD_STRP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390307|sp|Q5XB04|MURD_STRP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|19748678|gb|AAL98109.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes MGAS8232]
 gi|50903694|gb|AAT87409.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10394]
          Length = 452

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 133/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q            +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLNDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|313682069|ref|YP_004059807.1| mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313154929|gb|ADR33607.1| Mur ligase middle domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 480

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 121/359 (33%), Gaps = 34/359 (9%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A  K+A         TI+ +TGS GKT+ K  +   L      YA   S N   G+  
Sbjct: 147 RQAQGKIASMK----DLTIVCVTGSYGKTSMKNFIAQVLGQKFNVYATPRSVNTLGGIIR 202

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +P +    I E G   +G+I  +  L+ P I V+  + P HL  F  +E I   K
Sbjct: 203 DVNESLPENTQVYICEAGAREVGDIYAIAQLLHPQIVVVGKVGPQHLEYFKTLERIQRTK 262

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            EI                        K+      T     K       +R  K   E  
Sbjct: 263 LEIIHSNR-----------------LKKAFIHTSVTNEPHEKVTFFGDDVRNLKATLEGI 305

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             ++ ++G+        +G     N+   + I S +    D  + A+      E R +R 
Sbjct: 306 DFDLNIEGEERHFHTSVLGGFQTININAAILIASEMGMSSDEIVGAVEKLKSVEHRLERI 365

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     ++D+ YN N   M   + + S       GR++ V   + E    ++  + 
Sbjct: 366 DAGGK----IILDDGYNGNIDGMLEGVRLCSLHP----GRKVIVTPGLVE---STEELNS 414

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L   ++        ++G    A  D   R            +   +      GD+++ 
Sbjct: 415 ELISAINGV-FDIAIITGSLNAAQFDKELRVPQKIMLADKSQMVKTLGEVTKAGDIILF 472


>gi|319892171|ref|YP_004149046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161867|gb|ADV05410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 449

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 144/449 (32%), Gaps = 69/449 (15%)

Query: 51  YDGHDFILHAVQK-----------GA-GLVVVNTDMVASIGSLS---IPVFGV--DDVLG 93
            DG+D    A  K           GA  L +++   +          +P+        L 
Sbjct: 38  NDGNDLSNDAHAKDLEDLGISVVSGAHPLALLDEAPIIFKNPGIPYTVPIIQEAQKQGLK 97

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L ++ ++  + S+A II ITG+ GKTT   ++    +  ++     G+      V   +
Sbjct: 98  ILTEVELSYLI-SEAPIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGF---VASKV 153

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           A+     ++ + EL    L  I       RPHIA+IT +  AHL     +E   +AK  I
Sbjct: 154 AQEVKTDEYLVTELSSFQLLGIEHY----RPHIAIITNLYSAHLDYHENLENYQNAKKRI 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           FE   ++  +  N              +     I  F      D          E+ ++ 
Sbjct: 210 FENQTESDYLIFNDKQRHL-----IDTSKIRAKILYFSTQHRVDG------IYVEKEYIV 258

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H  +N+L  +    +    +   +++LS F     R    +  
Sbjct: 259 YNGVRLIHLDDIVLPGEHNLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRL---QYI 315

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N       ++S   N  + + A+S   Q      G            G    +   +L 
Sbjct: 316 GNNKTNKYYNDSKATNTLATQFALSSFKQPVIWLCG------------GLDRGNGFDELI 363

Query: 394 EVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
             ++  N+  +   G            +  +V  ++ +      +Q  +   DVV++   
Sbjct: 364 PYMN--NVRVMVTFGETQDKFVKLGESQGKYVIRAKDVTDAVAKVQVVIEPNDVVLLSPA 421

Query: 450 KSS---------NSCGFYRLINLLLEEFP 469
            +S               R I       P
Sbjct: 422 CASWDQYDTFEQRG---ERFIEAFRAHLP 447


>gi|297625038|ref|YP_003706472.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
 gi|297166218|gb|ADI15929.1| UDP-N-acetylmuramyl-tripeptide synthetase [Truepera radiovictrix
           DSM 17093]
          Length = 504

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 87/503 (17%), Positives = 153/503 (30%), Gaps = 86/503 (17%)

Query: 5   WTFHDLLQAI---QGHSIGIV-PQGFVNGISIDSRSIAPQE------AFFAIKGPHYDGH 54
                L++A          +  P+  V  I  D+R + P +       F A +G   DGH
Sbjct: 1   MKLAHLIRAALGPDATWSHLPLPEVEVRRIVQDTRELTPSDPATEPFIFVARRGAAVDGH 60

Query: 55  DFIL------------HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            F               A            +  +     + P   V D   AL +LA   
Sbjct: 61  RFAARAVAQGAVAVVGEA---------TPEEQASFAWRHAAPYIQVPDDRAALAQLAATL 111

Query: 103 RLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVP 150
                     + +TG+ GKTTT  +L   L   + T              G    H   P
Sbjct: 112 YGHPSRALFTVGVTGTDGKTTTATLLHHLLQGDRPTGLLSTAGVRLGEAEGGLFGHFTTP 171

Query: 151 LT-------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                     A +   +   + E   S  G  +     +   + ++T ++P HL      
Sbjct: 172 EAPEVQRTLAAFVARGLRAAVIE--SSSHGFAQRRLDAIDYDLGILTNLSPEHLDFHGTF 229

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E   +AKA++   + +  T  LN DD  +    A+      + I ++G  + A ++  + 
Sbjct: 230 ENYRAAKAQL---MARARTSILNADDPNYAYFAAR-----ARRIITYGVVRAATWRATEV 281

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           ++        +   G+S       +G +   N L  L         +  A+  L+ F   
Sbjct: 282 RELPGALEWRLTHAGRSYPARLPMVGSYNVYNALAALAAACEAGVPLAGALARLATFPGV 341

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            GR    +      F  ++D ++        A    L+ + P   G+ I V+G     GE
Sbjct: 342 PGR---MQVVQTAPFALVVDFAHTP-----PALEKALAALRPQVRGKLIVVVGAA---GE 390

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSIHVH---------YSETM 430
                   L    +      V+           A+   L                     
Sbjct: 391 RDPGKRAPLGAAAARGADLAVFTEEDARSEDPEAILAQLRAGAQGAGGRLGETFWLEPDR 450

Query: 431 DGLFLFIQSSLVDGDVVVV--KS 451
                   +    GD+V++  K 
Sbjct: 451 RAAIRRAVTLAEAGDLVLLAGKG 473


>gi|86134329|ref|ZP_01052911.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
 gi|85821192|gb|EAQ42339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Polaribacter sp.
           MED152]
          Length = 461

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 127/407 (31%), Gaps = 54/407 (13%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +V  +   +IPV        +  + A      +KATI+ ITGS GKTTT  +    L +
Sbjct: 94  PLVKKLVDNNIPVI-------SEIEFAANF---TKATIVGITGSNGKTTTTLLTHHILKN 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        +IG    L     + +  + E+    L          RPHIA++T I
Sbjct: 144 ANLDV----GAAGNIGDSFALQVAEKNYNNYVLEISSFQLD----GITNFRPHIAILTNI 195

Query: 193 APAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            P HL  +    +   ++K  I +  E+T  +  + DD        ++        +S  
Sbjct: 196 TPDHLDRYDYDFQNYINSKFRITKNQEETDFLIYDADDDVITGWLKENKTKAKLLPFSNE 255

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           K       ++           +  +            G H  +N +       +L    D
Sbjct: 256 KELKYGAFIKDNNITINIQKDKFYMPI----SSLSIKGKHNTKNAMAATMAAQLLKVRKD 311

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              ++LS F        R            I++S   N  +   A+  + Q +    G  
Sbjct: 312 AIKESLSNFEG---AEHRLENVAKIKDVHYINDSKATNVNATFYALECMDQQTIWIVG-- 366

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET-- 429
                     G    + + DL  ++    +  +   G     +K+     I     ET  
Sbjct: 367 ----------GVDKGNDYTDLLPLVRE-KVKAIVCLGVDNEKIKNTFGNVIET-IVETAG 414

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            +            GD V++    +S             F + +  L
Sbjct: 415 AEEAVKVSHKLAERGDAVLLSPACASFDLFQNYEDRGRQFKKAVRNL 461


>gi|120555365|ref|YP_959716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
 gi|158513048|sp|A1U3G0|MURD_MARAV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|120325214|gb|ABM19529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinobacter
           aquaeolei VT8]
          Length = 446

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 43/363 (11%)

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GKTT   ++     +  +          +IG P     +    D  + EL    L 
Sbjct: 115 TGSNGKTTVTTLVGEMARAAGRNVQVG----GNIGTPALDL-LEQGADLYVLELSSFQLE 169

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
               L        A +  ++  H+  +        AK  I+ G +       +       
Sbjct: 170 TTEELGA----LAATVLNVSDDHMDRYPDKMAYFQAKQRIYRGCKNAIVNLDDA------ 219

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              +   A        FG     + +    +   E +W+   L+   +      +G H  
Sbjct: 220 --LSTPMARDTLRFLCFG-FNRVNPETFSTRDDDEGTWITWGLENLLLASELQLMGRHNI 276

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N++  L +       ++  ++    F     R        N      I++S   N  + 
Sbjct: 277 SNVMAALALGYAAGLAMEPMLEVARRFRGLPHRC---ESVRNLDGVDYINDSKGTNVGAT 333

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  L        G+ I + G     G+   +    LAE ++      + L G     
Sbjct: 334 VAAIESL----VPESGKVILIAG-----GDGKGADFQPLAEPVAAC-CRALVLIGRDAGK 383

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           +  A+  S+  H + ++       + +   GD V++    +S             F  L+
Sbjct: 384 ISRAVGASVPQHRATSLQEAVSLARQAAEPGDRVLLSPACASFDMFRDYNDRGEQFRTLV 443

Query: 462 NLL 464
             L
Sbjct: 444 EGL 446


>gi|302557646|ref|ZP_07309988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
 gi|302475264|gb|EFL38357.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces griseoflavus
           Tu4000]
          Length = 462

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 147/423 (34%), Gaps = 48/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ +      L       IPV    D L AL
Sbjct: 49  ALRALGATVHIGH--AAGHLADDASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++L+++ +  +     +           
Sbjct: 107 MD---------GLRPIAVAGTHGKTTTTSMLAVSLTALGREPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    +  + E   S     ++      P +A+I  +   H +N++ +EEI  +      
Sbjct: 155 LHGGGEIFVAEADESDRSFHKYA-----PEVAIILNVELDHHANYASMEEIHQSFETFVG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L  +    G     ++G+S +AD ++        +S + V+
Sbjct: 210 RVVPGGTLVISADHEGARELTRRLD--GSVRTVTYGESADADVRVLSVVPQGLRSEVTVE 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L   + L         AL+ +   + R +       
Sbjct: 268 LDGAPLTFTVSVPGRHYAHNAVAALAAGAALGIPAAELAPALAAYTGVKRRLQ----LKG 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   ++    ++ + 
Sbjct: 324 EAAGVQVVDSYAHHPTEMTADLEAM----RAAAGDARILVVFQPHLFSRTRELGKEMGQS 379

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           LSL + S V            G     + +A       V        +   +      GD
Sbjct: 380 LSLADASVVLDIYPAREDPIPGVTSELIIEAARAAGADVTAVHDQAEIPEVVAGMAKPGD 439

Query: 446 VVV 448
           +V+
Sbjct: 440 LVL 442


>gi|148381457|ref|YP_001255998.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|153933316|ref|YP_001385832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936485|ref|YP_001389239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A str. Hall]
 gi|166224758|sp|A7FZA3|MURD_CLOB1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224759|sp|A5I7P2|MURD_CLOBH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148290941|emb|CAL85077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152929360|gb|ABS34860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932399|gb|ABS37898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A str. Hall]
          Length = 458

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     +  ++ ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGIK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISYKKCEMEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNSL 458


>gi|187932212|ref|YP_001892197.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|229620042|sp|B2SE51|MURC_FRATM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187713121|gb|ACD31418.1| UDP-N-acetylmuramate-alanine ligase [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 451

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 133/391 (34%), Gaps = 26/391 (6%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +  +++   SL I              + ++  ++  +  IAITG+ GKTTT  +
Sbjct: 69  SAILSSHPLLSQARSLGIQCLQ--------RAMFLSVLMKDFSYSIAITGTHGKTTTSSV 120

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L   L  + K  + I                    D  + E   S           + P 
Sbjct: 121 LATLLCQLDKYSSFIVGGVVKYADSNIQVN---GTDKLVIEADES-----DASFLFLSPQ 172

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +IT I   H++ ++   +        F   E   +I+L  DD     L AK +    K
Sbjct: 173 VVIITNIDLDHMATYNNSYQTLLENFTDFVSKESVKSIYLCVDDQGCRDLLAK-YNQSDK 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S+G S +AD Q+  +    E +  +++ +G  +       G +  QN    +     
Sbjct: 232 NVTSYGFSIDADVQIYDYHIIDEITHFKIRYKGDDLSFKLQLPGRYNVQNATACIIACLD 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-----NPASMKAAISVL 360
           L    +    AL        R   Y   ++    T+ID+  +      N  S        
Sbjct: 292 LGFKYEDIRNALIKVTGVARRFDLYTKVISGHQVTVIDDYGHHPVEVANSISAVRDRYPN 351

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            +I    +  R     D+ +    + S    L  +L  Y+     + G     +   L  
Sbjct: 352 KKIIHVFQPHRYTRNRDLIKDWPKALSLADQLI-LLPTYSADEQIIKGAESQDIVKGLSG 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 ++  D    F++    +  V++++ 
Sbjct: 411 ---YLLADGFDHAIYFLEKLANENTVILIQG 438


>gi|126172652|ref|YP_001048801.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS155]
 gi|125995857|gb|ABN59932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS155]
          Length = 439

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 130/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   V     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++               +   +IGVP     +  + D  + EL    L      TH
Sbjct: 122 TVTTLVGEMAREAGIAV----AVGGNIGVPALDL-LHENADLFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A    I+  H+  +S I     AK  +++          +      E +   S 
Sbjct: 173 SLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQSRAVLFNRDDKLTVPPEPMNQNSF 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L       +G                  S +               IG H   N+L  +
Sbjct: 233 GLAAPETDEWGI---------------SDSKIYHGSSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V ++  D     K    F     R         +   T +++S   N  +  AA+  L
Sbjct: 278 ALVDVVGVDKQVMAKVARSFTGLSHRC---EVVGIKNGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G     G+   +    L   ++L  ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++ V   ETM             GD+V++    +S             F  L+  L
Sbjct: 384 AVRV---ETMAAAVTKAAELATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|255659952|ref|ZP_05405361.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
 gi|260847826|gb|EEX67833.1| UDP-N-acetylmuramate--alanine ligase [Mitsuokella multacida DSM
           20544]
          Length = 465

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 69/430 (16%), Positives = 145/430 (33%), Gaps = 59/430 (13%)

Query: 63  KGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +G   +VV+T +            L I      D+  AL          ++   IA+ G+
Sbjct: 70  RGVDAIVVSTAIPFDNPEVLAAKDLGITKLHRSDINAAL---------VNEYKGIAVAGA 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML +AL+    + + +        V   +  +  + + G  +  +S   E  
Sbjct: 121 HGKTTTTSMLGVALTHAGVSPSVV--------VGGEVPDLGTNAELGTSDYLVSEADESD 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + PHIAV+T +   H+ ++  +E I  A  +  + ++K           F     
Sbjct: 173 GSFLKLHPHIAVVTNVEDDHMDHYGTMENIIKAFTQFIQNVDKE---TGYAVICFDNENL 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   +   ++     AD++ +         S+     + +   V  +  G H   +
Sbjct: 230 RNMAKNLDRKYITYAIDHEADYRAKNITHSGTGISFDVFHGEEELGHVDLNIPGRHNVLD 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  +     +    +     L+ FH  + R +             I + Y  +P  + A
Sbjct: 290 AMACIVTGLSIGVSFEKMASGLAAFHGAKRRFQTKGRVNG----VWIVDDYAHHPTEIAA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV- 411
            +    + +P        +          +Q  H +  +     ++   + V+ +G    
Sbjct: 346 TLKAAKETNPKR-----LICVFQPHRYSRTQLLHEEFGKAFVSADVLVLTDVYAAGEAPI 400

Query: 412 -----LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------- 457
                  + D + R    HV Y    + L  +++  +  GD+V+     + G        
Sbjct: 401 PGISGQTIVDEVQRQSGQHVVYEPAREKLAAYLKDFVQPGDLVI-----TMGAGDIYKTG 455

Query: 458 YRLINLLLEE 467
             L+ LL  +
Sbjct: 456 EELVALLQAK 465


>gi|208778934|ref|ZP_03246280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
 gi|208744734|gb|EDZ91032.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida FTG]
          Length = 417

 Score = 64.5 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 129/393 (32%), Gaps = 69/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +K                        L   S+   +  +++ G     ++Q+ +    
Sbjct: 187 KQSKLN----------------------LAKFSNDFFVYDVHNNGIKYAGEYQIIRGAIY 224

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + +                      N+   + +++IL        +A+      +G 
Sbjct: 225 RNSTKLLD----------IAETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 274

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 275 EHRCKIVKKVNDTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 329

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 330 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 383

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 384 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 416


>gi|328945583|gb|EGG39734.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1087]
          Length = 459

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 129/346 (37%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +EE A+AK  I + +     + 
Sbjct: 175 MELSSFQLIGIE----DFHPQIAVITNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A    T+  F  ++  D          E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQA----TVMPFSTTEKVDG------AYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 385 VILGQSAPRVKRAADQAGVSYLDATDVRDAAHKAFAQAEPGDIVLL 430


>gi|309799972|ref|ZP_07694172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
 gi|308116371|gb|EFO53847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           infantis SK1302]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+       IPV         L  L       S A I+ ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALEKGIPVL----TEVELAYLI------SDAPIVGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   D D  + EL    L  I+       P IAVI
Sbjct: 135 TAAGQN----GLLSGNIGYPASQVAQTATDKDTLVMELSSFQLMGIQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E   +AK  I   +     + LN++    + L  K++A  +     
Sbjct: 187 TNLMPTHIDYHGSFEAYVAAKWNIQSNMTAADYLVLNFNQELAKELATKTNATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGLLYFRGEKVMAADEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NEIIKETLSAFGGVKHRL---QFVDQINGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVDAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +            +GDVV++
Sbjct: 401 DIADATRKAYELAEEGDVVLL 421


>gi|256784420|ref|ZP_05522851.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces lividans TK24]
 gi|289768299|ref|ZP_06527677.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
 gi|289698498|gb|EFD65927.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces lividans TK24]
          Length = 462

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 145/423 (34%), Gaps = 48/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ +      L       IPV    D L AL
Sbjct: 49  ALRALGATVHIGH--AAEHLAADASCVVVSSAIREDNPELVRAAELGIPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++LS +    +     +           
Sbjct: 107 MN---------GLRPIAVAGTHGKTTTTSMLAVSLSELDLGPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 155 LHGEGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ +  D      L  +    G     ++G+S++AD ++        +S + V 
Sbjct: 210 KIVPGGTLVIAADHEGARELTRRL--AGRVRTVTYGESEDADVRILSVVPQGLKSEVTVV 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L   + L         AL+ +   + R +       
Sbjct: 268 LDGAELTFAVSVPGRHYAHNAVAALAAGAALGVPAAELAPALAAYTGVKRRLQ----LKG 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +     +       RI VL     +   +Q    ++   
Sbjct: 324 EAAGVQVVDSYAHHPTEMTADLEA---MRAAVGDARILVLFQPH-LFSRTQELGKEMGHA 379

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + +A       V      D     +      GD
Sbjct: 380 LALADASVVLDIYPAREDPIPGVTSELIVEAARAAGADVTPVHDKDASPALVAGMAKAGD 439

Query: 446 VVV 448
           +V+
Sbjct: 440 LVL 442


>gi|94988878|ref|YP_596979.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS9429]
 gi|94992769|ref|YP_600868.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS2096]
 gi|122063265|sp|Q1JAT4|MURD_STRPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063266|sp|Q1JKY4|MURD_STRPC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94542386|gb|ABF32435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS9429]
 gi|94546277|gb|ABF36324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS2096]
          Length = 452

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 133/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q            +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLNDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TKKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|196045927|ref|ZP_03113156.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
 gi|196023367|gb|EDX62045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB108]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 116/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDVDVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T++   +   +   DGDV+++
Sbjct: 374 AIVTFGQTASKLVRAAEKAGLETIESVDTLEEAVVKAYAHSTDGDVILL 422


>gi|299142299|ref|ZP_07035432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
 gi|298576388|gb|EFI48261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           C735]
          Length = 443

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 113/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + ++ ITGS GKTTT  ++     S             +IG  L L       ++ + E
Sbjct: 101 HSKMVCITGSNGKTTTTSLIYHIFKSAGYDV----GLAGNIGKSLALQVAEDPHEYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +      +   
Sbjct: 157 LSSFQLN----NMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTPEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K K +   +       E             +   
Sbjct: 213 WNDDPVIKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLE-----YPTPFNMEQEAL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     +   K+LS F   E R ++            I++S
Sbjct: 268 SLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVCKVGGVQ---YINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           + +LG     G+   + +  + + L       + 
Sbjct: 325 KATNVDACWYALESMKT-------PTVLILG-----GKDKGNDYTPI-KELVKKKCRGLV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     L D      + V  + +M             GD V++    +S         
Sbjct: 372 YLGADNRKLHDNFDALDLPVKDTHSMKDCVEACHEMAKSGDTVLLSPCCASFDLFHNMEE 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGNMFKDLVREL 443


>gi|210631902|ref|ZP_03297114.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
 gi|210159827|gb|EEA90798.1| hypothetical protein COLSTE_01004 [Collinsella stercoris DSM 13279]
          Length = 552

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 78/505 (15%), Positives = 132/505 (26%), Gaps = 71/505 (14%)

Query: 4   LWTFHDLLQA--IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FILH 59
           L+   D+L A  ++    G      V+G++IDSR +AP+  F   KG    G    F+  
Sbjct: 35  LFDLVDVLHASDVEARVFGDGA-ACVDGMAIDSREVAPRNLFVC-KGA---GFRPAFLES 89

Query: 60  AVQKGAGLVVVNTDMVASIGSLSI-------PVFGVDDVLGALNKLAVAARLRS--KATI 110
           AV  GA   +             +       P   V DV  A+  +A         +  +
Sbjct: 90  AVAAGAAAYLCEGVGEGLSIPSELVAAAAVTPALVVSDVRRAMALVAPVIYRHPEDQLHV 149

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--------------LTLARM 156
           + ITG+ GK+T   ML   L +  +  + +GS     G                    R 
Sbjct: 150 VGITGTKGKSTVAYMLRSILVAAGQEPSILGSIETDDGKVRYESHNTTPEAPDLWRHLRN 209

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIF 214
            VD       + +S  G        +   I     I   H+S       E+  ++K  IF
Sbjct: 210 TVDAGRRTMVMEVSSQGLKYDRVLGLPFEIGCFLNIGRDHISGVEHPDFEDYFASKLRIF 269

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              E                    +  +    +   G+  +                 ++
Sbjct: 270 NQCEVAVVNLATDHVDRVLQAAKSAPCVATFAVEHAGEGSHGGKVWPVEPLFIASGVTQL 329

Query: 275 QLQG---------------KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
              G                   +     G     N L  + +  +L    D     L+ 
Sbjct: 330 PTGGLAFTVRERAAEGEIACEEHIELGMPGLFNVDNALAAISMARLLGVGYDAIRAGLAQ 389

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                          +     L    Y  N  S +     +    P        V+    
Sbjct: 390 IRVPGR----MELVSSADGHVLAIVDYAHNELSFETLFKSVKAEYPDRR-----VVALFG 440

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL--------SGFHVLALKDALPRSIHVHYSETMD 431
             G  +Q     L  V   Y    V+                L    P  +        +
Sbjct: 441 APGGKAQERREALPRVAGAYADHLVYTEEDPAHDRVEDICAELVKNTPAGVSHEVILDRE 500

Query: 432 GLFLFIQSSL----VDGDVVVV-KS 451
                +            V+++ K 
Sbjct: 501 EAVRTVLERALACGEPSVVLLLAKG 525


>gi|94994757|ref|YP_602855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS10750]
 gi|118595696|sp|Q1J5S5|MURD_STRPF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94548265|gb|ABF38311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS10750]
          Length = 452

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q            +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLNDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E  ++             GD +++
Sbjct: 388 AANKA-EVSYLEARSVAEATELAFKLAQTGDTILL 421


>gi|317177431|dbj|BAJ55220.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F16]
          Length = 493

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+T +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVTEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWENFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVWELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKVQLENILQATTIQGDLILF 485


>gi|306827028|ref|ZP_07460326.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
 gi|304430774|gb|EFM33785.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           pyogenes ATCC 10782]
          Length = 438

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 54  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 107

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 108 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 159

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 160 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 219

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 220 K----------TTQATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 269

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 270 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 322

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 323 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 373

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 374 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 407


>gi|160915597|ref|ZP_02077808.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
 gi|158432717|gb|EDP11006.1| hypothetical protein EUBDOL_01607 [Eubacterium dolichum DSM 3991]
          Length = 440

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 115/385 (29%), Gaps = 43/385 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             VV    +       +P+    V+  +    ++ +A R  +     AITG+ GKTT   
Sbjct: 64  AFVVKNPGIKYT----VPIVRYFVEHEIAIYTEIEIAYRYANGFRYGAITGTNGKTTITT 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L               +IG PL+   +  + +  + ++ +              P
Sbjct: 120 MLYEMLKKKG-----QAIVAGNIGYPLSELALRYEDE--VKDVALELSNFQLLGIEQFAP 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V+  +AP HL     +E   ++K  I+E  ++      N DD              I
Sbjct: 173 TVSVVCNLAPDHLDYMPSVESYYASKMRIYENCKEDAWFLRNLDDPIVMEYAKNIPCKVI 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +           +          +  +      E      G +   N ++   +  
Sbjct: 233 DFSLT----------RKNCPLHRANGKVYFEDVVLFEEKSLALKGDYNLSNAMIAACMAY 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +     ++ F P E R         +      ++S   N  +++AA+    +  
Sbjct: 283 RLGVSCEDIQTVIAQFQPVEHRM---EYIGEKRGVKFYNDSKATNTHAVEAALHCFDKNI 339

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G            G        +L+       I      G       +      HV
Sbjct: 340 ILLAG------------GHDKGISFQELSAY--DKRIKLCIAFGETKDQFVNVFS---HV 382

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              ETM            +GDV+++
Sbjct: 383 ETRETMQAALTTAIEKASEGDVILL 407


>gi|217971631|ref|YP_002356382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS223]
 gi|217496766|gb|ACK44959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS223]
          Length = 439

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 129/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   V     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++               +   +IGVP     +  + D  + EL    L      TH
Sbjct: 122 TVTTLVGEMAREAGIAV----AVGGNIGVPALDL-LHENADLFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A    I+  H+  +S I     AK  +++          +      E +     
Sbjct: 173 SLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQSRAVLFNRDDKLTVPPEPM----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG +                S  ++      +  +          +  +  
Sbjct: 228 -----NQNSFGLAAPE-------ADEWGISDSKIYHGSSEIMPITEVSLIGSHNHANLLA 275

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +    VD  I A  V     G   R      +   T +++S   N  +  AA+  L
Sbjct: 276 AMALVDVVGVDKQIMA-KVARSFTGLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G     G+   +    L   ++L  ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++ V   ETM             GD+V++    +S             F  L+  L
Sbjct: 384 AVRV---ETMAAAVTKAAELATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|152998950|ref|YP_001364631.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS185]
 gi|151363568|gb|ABS06568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS185]
          Length = 439

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 129/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   V     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++               +   +IGVP     +  + D  + EL    L      TH
Sbjct: 122 TVTTLVGEMAREAGIAV----AVGGNIGVPALDL-LHENADLFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A    I+  H+  +S I     AK  +++          +      E +     
Sbjct: 173 SLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQSRAVLFNRDDKLTVPPEPM----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG +                S  ++      +  +          +  +  
Sbjct: 228 -----NQNSFGLAAPE-------ADEWGISDSKIYHGSSEIMPITEVSLIGSHNHANLLA 275

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +    VD  I A  V     G   R      +   T +++S   N  +  AA+  L
Sbjct: 276 AMALVDVVGVDKQIMA-KVARSFTGLSHRCEVVGIKNGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G     G+   +    L   ++L  ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++ V   ETM             GD+V++    +S             F  L+  L
Sbjct: 384 AVRV---ETMAAAVTKAAELATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|322517040|ref|ZP_08069927.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
 gi|322124387|gb|EFX95889.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           vestibularis ATCC 49124]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +   +   + D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----YGGKSGVLSGNIGFPASEVAQSVTNQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      E   +AK  I   +     + 
Sbjct: 166 MELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEGYVAAKWNIQNKMTSDDFVI 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  +++A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATQTNAQVVP----FSTVEKVDG------AYLENGGLYFKGELVMHADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  + +       + LS F   + R    +           ++
Sbjct: 272 LGVPGSHNVENALATIAVAKLSSVSNQAIKETLSSFGGVKHRL---QFVDTIDNVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELIPDI--IGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  R+   H  ++ +             GDVV++    +S        
Sbjct: 376 VILGESAPRVKRAADRAGVTHLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFITTVERLK 449


>gi|307690761|ref|ZP_07633207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate/D-alanyl-D-alanyl ligase [Clostridium
           cellulovorans 743B]
          Length = 64

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             A  +              +G   ++ S + + D+++VK+S S  F  ++  L 
Sbjct: 2   AKAYSEGFNNKNSSIELAEKEGAIAYLTSEIREEDIILVKASRSMKFETIVEALK 56


>gi|145635584|ref|ZP_01791282.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
 gi|145267146|gb|EDK07152.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Haemophilus influenzae PittAA]
          Length = 358

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 22/296 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G  +     +    A+ T +   HL     +E  A+AK  +F  L+    +   
Sbjct: 49  IEVSSHGLAQHRVEALHFKAAIFTNLTRDHLDYHQSMENYAAAKKRLFTELDTQIKVINA 108

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D+  ++ L     A+ +     F    +   +        + + +  +    +  +   
Sbjct: 109 DDEIGYQWLTELPDAIAVSMNADFKVGSHQWMKAINIHYHFKGADITFESSWGNGVLHSP 168

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG     N+L+ +  +      ++  +          GR +  +             + 
Sbjct: 169 LIGAFNVSNLLLVMTTLLSFGYPLENLLATAKSLKGVYGRMEMIQYPNKPTVIVDYAHTP 228

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           +A   ++ AA         H +G    + G     G         L   ++      + +
Sbjct: 229 DALEKALIAARE-------HCQGELWCIFG----CGGDRDRGKRPLMAQVAEQFAETIIV 277

Query: 407 SGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +            +         V           F   S V+ DV+++  K 
Sbjct: 278 TKDNPRTEPQSQIEADIVAGFKNMEKVGIIPDRAQAIQFAIESAVENDVILIAGKG 333


>gi|157151093|ref|YP_001449974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|189082919|sp|A8AW14|MURD_STRGC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157075887|gb|ABV10570.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           gordonii str. Challis substr. CH1]
          Length = 450

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 126/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +     D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSACGKDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL      EE A+AK  I + +     + 
Sbjct: 166 MELSSFQLMGIEAFH----PQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADDYLV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      +   +  + +       
Sbjct: 222 LNFNQDWAKGMASQTQATVVPFSTT----------EKVDGAYLDGDVLTFRGEAIIKVAE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +        +    GD+V++
Sbjct: 376 VILGQSAPRVKRAADQAGVSYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|325690202|gb|EGD32206.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK115]
          Length = 459

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 123/346 (35%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+  AL++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +E  A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L  + +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALAMIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A     +    +  +        S    GD+V++
Sbjct: 385 VILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|19553357|ref|NP_601359.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390996|ref|YP_226398.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324927|dbj|BAB99550.1| UDP-N-acetylmuramate-alanine ligase [Corynebacterium glutamicum
           ATCC 13032]
 gi|41326335|emb|CAF20497.1| PROBABLE UDP-N-ACETYLMURAMATE--ALANINE LIGASE PROTEIN
           [Corynebacterium glutamicum ATCC 13032]
          Length = 486

 Score = 64.5 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 142/414 (34%), Gaps = 37/414 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 91  DNPELVRAREEGIPVIRRSDLLGELLE---------GSTQVLIAGTHGKTSTTSMSVVAM 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +        +   +   G  E+ ++   E        +P++AV+T
Sbjct: 142 QAAGMDPSFAIGGQLN--------KAGTNAHHGTGEVFIAEADESDASLLRYKPNVAVVT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS- 249
            + P HL  F   E       +    +   G + +  +D     L  +S   GIKT+   
Sbjct: 194 NVEPDHLDFFKTPEAYFQVFDDFAGRITPNGKLVVCLNDPHAAELGERSVRKGIKTVGYG 253

Query: 250 ------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       A   +   +  +E +   + + G+ + V+    G HM  N    L   
Sbjct: 254 TADAVQAHPEVPAMATIVDSQVVAEGTRATINIDGQEVSVILQIPGDHMVLNGAAALLAG 313

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++  DVD  ++ LS F     R + +       F         A+  +   A+   ++ 
Sbjct: 314 YLVGGDVDKLVEGLSDFSGVRRRFEFHGAIEGGKFNGAAIYDDYAHHPTEVTAVLSAART 373

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLAL 414
                G+   ++     +   +  F  + A  LSL + + V          + G     +
Sbjct: 374 RVKAAGKGRVIVAFQPHLYSRTIEFQKEFAGALSLADAAVVLEIYGAREQPVDGVSSEII 433

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            DA+  +I V Y      +   I       D+V+   + S       +++ L  
Sbjct: 434 TDAM--TIPVVYEPNFSAVPERIAEIAGPNDIVLTMGAGSVTMLAPEILDQLQN 485


>gi|293571733|ref|ZP_06682752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
 gi|291608190|gb|EFF37493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E980]
          Length = 453

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 104/319 (32%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           PHIAVIT I  AH+      +E   AK  + + +   
Sbjct: 164 DKIVMELSSFQLM----GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLVLNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDHAIYYKKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L +FH    R    +         
Sbjct: 271 EISELGVPGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G         L        
Sbjct: 328 FYNDSKATNILATKMALSGFETAKV-------VLLAGGLDRGNTFDELVPSL------KG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDV+++    +S   
Sbjct: 375 IKAMIVFGQTKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F  ++N L 
Sbjct: 435 YPNFETRGNRFMEVVNQLK 453


>gi|262273812|ref|ZP_06051625.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
 gi|262222227|gb|EEY73539.1| UDP-N-acetylmuramate--alanine ligase [Grimontia hollisae CIP
           101886]
          Length = 487

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 151/418 (36%), Gaps = 40/418 (9%)

Query: 47  KGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAAR 103
           KG       F+ HA     GA +VVV+T +      L +     +  V  A   LA   R
Sbjct: 66  KGAKV----FLGHAESNVDGASVVVVSTAIRQDNPELVAAKTARIPVVRRA-EMLAELMR 120

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R     IA+ G+ GKTTT  + T+           +                  +   G
Sbjct: 121 YRHG---IAVAGTHGKTTTTALTTLIYQEAGLDPTFVNGGLVK--------SAGTNARLG 169

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
                ++   E       ++P +A++T I   H+  +    + +     +    L   G 
Sbjct: 170 CSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYGGNFDNLKQTFIDFLHNLPFYGL 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM 281
             +  DD     L  +      + + ++G S++AD +L+ ++Q   +  +  ++     +
Sbjct: 230 AVMCVDDPVVRELIPRI----GRQVITYGFSEDADVRLKDYRQEGQKGIFTVLRAGKPDI 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  +  G H A N    + + +    + D  ++AL+ F     R  +         + L
Sbjct: 286 HVELNIPGRHNALNAAAAVAVATEDGVEDDAILRALASFEGTGRRFDQLGLFPVDDGYAL 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P+ +   I      +  G      V+         ++  + D A VL   ++
Sbjct: 346 LVDDYGHHPSEVDVTIQA----ARAGWADNRLVMVFQPHRYSRTRDLYDDFANVLEQVDV 401

Query: 402 SH---VWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
                V+ +G   +A  D   L R+I         +   +D L   + + +  GD+V+
Sbjct: 402 LLMLDVYPAGEAPIAGADGRSLCRTIRGRGKIDPIFVPDVDALPAALAAVIQPGDLVL 459


>gi|182414448|ref|YP_001819514.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
 gi|177841662|gb|ACB75914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutus terrae
           PB90-1]
          Length = 442

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 114/384 (29%), Gaps = 46/384 (11%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A   LA         T+IA+TG+ GKTT  E LT AL SI +    +G+  +     +  
Sbjct: 86  AELDLASVFWR---GTVIAVTGTNGKTTLTEFLTHALRSIGRDARSVGNVGHSFAQAVAE 142

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           +         + E+               R    + T IA  HL    G+E   +AK  +
Sbjct: 143 SNGGTSEQIAVCEVSSFQ----AETLKHFRASATLWTNIAEDHLERHPGLESYFNAKWNL 198

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                   T   +                 ++             +    +       + 
Sbjct: 199 VLHTRVPATGTAHPLPFVGARGGGVFAGSSVRRFAERYGRPLTGIEWVATEHQPTNPRLA 258

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +     +  ++ +     +   + +  + +     D     L++              
Sbjct: 259 GTVFADYPQRENYLLAEAWWRAAGLPVEQLELAAKRFDLGRHRLAL-------------V 305

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + +   T  ++S   N  +++AA+   +          + + G   + G+L+   H  +A
Sbjct: 306 VERDGATYWNDSKATNFHAVEAALERFTT-------PVVLIAGGKAKGGDLAGFVHR-IA 357

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVK-- 450
             ++     HV L G     L          H    T++            GD V++   
Sbjct: 358 PRVA-----HVVLIGETSEELAFHCAAFRVAHTRCSTLEDAVRRAAELAEPGDHVLLSPG 412

Query: 451 -SS---------NSCGFYRLINLL 464
            +S             F +L   L
Sbjct: 413 FASFDMFRSYADRGEQFEQLARNL 436


>gi|88704098|ref|ZP_01101813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
 gi|88701925|gb|EAQ99029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Congregibacter
           litoralis KT71]
          Length = 456

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 113/367 (30%), Gaps = 44/367 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +I ITGS  K+T  EML   + +   T         ++GVP     +    +  + E
Sbjct: 116 QAPVIGITGSNAKSTVTEMLGAMVRAAGYT----AGVGGNLGVPALDL-LDDRNELYVLE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  + P HL     +     AK  IF G +K      +
Sbjct: 171 LSSFQL----ERAGALNLQVATVLNLTPDHLDRHGSMPRYHQAKHRIFNGCKKVVYNLDD 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                          L         +    D Q    +    +  +    +         
Sbjct: 227 PLT---------IPPLAAGRQQLSWRLGEPDLQGFGLRDIDGEPTLVHGFEPLLKASELA 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L + S +    +  +  L  F     R       L  G    I++S 
Sbjct: 278 LPGRHNLANALAALALGSAIDLPREAMMTVLREFSGLAHRC---ELVLESGGVRWINDSK 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +       L+ I   GE  R+ ++    + G         + +     +   V L
Sbjct: 335 ATNVGA------ALAAIEGLGESHRLILIAGGRDKGAD-----FRVLKPAVAAHCDKVLL 383

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK------------SSNS 454
            G     + +AL  +  +   +T++      ++    GD+V++              +  
Sbjct: 384 IGEAAPVIAEALGDAGDLLSVDTLEAAVASARAVAKPGDIVLLSPACASFDQFESYGARG 443

Query: 455 CGFYRLI 461
             F  L+
Sbjct: 444 ERFKELV 450


>gi|331701059|ref|YP_004398018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329128402|gb|AEB72955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 459

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 124/395 (31%), Gaps = 49/395 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALN-----------KLAVAARLRSKATIIAITGS 116
            +++      + +  IP    D+ + A             +LA      + A II +TGS
Sbjct: 67  AILDDGFDIMVKNPGIPY---DNAVVAAAVDHHLPIITEVELASQI---TDAEIIGVTGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+T  L+  +       + N  I    T  +   D D  + EL    L  I+
Sbjct: 121 NGKTTTVTMITEILNQERAKGHAYAAGNIGISATETAKKATAD-DTIVMELSSFMLLGIK 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + PH+AV+T I   HL      E   +AK  I           +N+D   +  L 
Sbjct: 180 ----TLHPHVAVLTNIFSNHLDYHKTRENYVNAKMRITMNQTPEDFFVVNFDSDEWRGLS 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +S A  +    +                  +   +    +           G    +N 
Sbjct: 236 KRSAAKVVPFART---------TEIDKGAYEKNGKLYYNDEFIMNAEDIKVPGKQNVENA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +    +L          L  F     R    +  L        ++S   +  + + A
Sbjct: 287 LAAIACAKVLGKSNLAITNVLETFTGVRHRL---QFVLEANGRKFYNDSKATDIEATQMA 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    +      G            G         L       ++    L G     L+D
Sbjct: 344 LEGFDKPVVLLAG------------GLDRGYTFDKLIPQFKE-HVKAAVLFGETADLLED 390

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L ++   ++   + +D       S   +GD+V++
Sbjct: 391 SLKKAGIQNIQKVDNIDEAVPAAYSFSDEGDIVLL 425


>gi|66047331|ref|YP_237172.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. syringae B728a]
 gi|75500772|sp|Q4ZNY8|MURD_PSEU2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|63258038|gb|AAY39134.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudomonas
           syringae pv. syringae B728a]
          Length = 448

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 117/343 (34%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA +IAITGS  K+T   ++    ++  K      +   ++G P     +  +V+  + E
Sbjct: 108 KAPVIAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LSDEVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNGQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S              +     L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGKGADFSG------LRAPVARHCRAAVL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVPLLRVDTVQAAVEHSAKLAQCGDAVLL 420


>gi|254372509|ref|ZP_04987998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151570236|gb|EDN35890.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3549]
          Length = 417

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 129/393 (32%), Gaps = 69/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +K                        L   S+   +  +++ G     ++Q+ +    
Sbjct: 187 KQSKLN----------------------LAKFSNDFFVYDVHNNGIKYAGEYQIIRGAIY 224

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + +                      N+   + +++IL        +A+      +G 
Sbjct: 225 RNSTKLLD----------IAETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 274

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 275 EHRCKIVKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 329

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 330 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 383

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 384 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 416


>gi|118497141|ref|YP_898191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida U112]
 gi|194323439|ref|ZP_03057216.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|254373970|ref|ZP_04989452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|158512419|sp|A0Q5C2|MURD_FRATN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118423047|gb|ABK89437.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           novicida U112]
 gi|151571690|gb|EDN37344.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           novicida GA99-3548]
 gi|194322294|gb|EDX19775.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. novicida FTE]
 gi|328676610|gb|AEB27480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida Fx1]
          Length = 417

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 129/393 (32%), Gaps = 69/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQID----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +K                        L   S+   +  +++ G     ++Q+ +    
Sbjct: 187 KQSKLN----------------------LAKFSNDFFVYDVHNNGIKYAGEYQIIRGAIY 224

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              + +                      N+   + +++IL        +A+      +G 
Sbjct: 225 RNSTKLLD----------IAETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 274

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 275 EHRCKIVKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 329

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 330 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 383

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 384 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 416


>gi|126700267|ref|YP_001089164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile 630]
 gi|255101821|ref|ZP_05330798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-63q42]
 gi|255307688|ref|ZP_05351859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile ATCC 43255]
 gi|118595649|sp|Q182Y7|MURD_CLOD6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115251704|emb|CAJ69539.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Clostridium difficile]
          Length = 451

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 87/289 (30%), Gaps = 28/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF        
Sbjct: 161 LVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDF 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD   + L  K +A      +S  K  N    L       +       L    + 
Sbjct: 217 CVLNYDDEIVKSLADKCNAK--VIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +       +        + I  +   D++     L  F   E R        N      +
Sbjct: 275 LPGGHNLENCM----AAIAIAYVCKIDLEVIKDVLMTFKGVEHRQ---EFVRNLDNVIYV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   AI              I + G M + G              +   + 
Sbjct: 328 NDSKGTNPDSTIKAIQSYD-------RPIILIAGGMDK-GSNFDELLET-----AKSYVK 374

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G     +++         +H  + M+            GD+V++
Sbjct: 375 SLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|317484864|ref|ZP_07943756.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316923910|gb|EFV45104.1| UDP-N-acetylmuramate-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 455

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 122/396 (30%), Gaps = 44/396 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     IPV         +  LA   RLR+    IAI G+ GKT+T  +
Sbjct: 73  SAVAEDNPEVVAARQKGIPVI----PRAEM--LAELMRLRTG---IAIAGTHGKTSTTSL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 +       I     +            +   G  E  ++   E       + P 
Sbjct: 124 TAAIFDAASLDPTVIIGGRIN--------AYGANARLGQGEYLIAEADESDGSFLCLLPI 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T +   HL ++   E I  A       +   G   +  DD   E L  +     + 
Sbjct: 176 INVVTNVDRDHLDHYGNQEAIDEAFVSFMNQIPFYGLNVVCGDDPGVERLLPRVKRPVV- 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G       +    +      +       +  EV     G H   N L  +G+   
Sbjct: 235 ---TYGFGSGNHIRAEVLECGVINRFKVFIKGEELGEVTLRQPGRHNILNALAAIGVALD 291

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM----------KA 355
              +    I+ L+ F     R +       +    L+ + Y  +P  +            
Sbjct: 292 AGIEPHFCIEGLARFGGVGRRFEH----KGEKNDILVVDDYGHHPVEIAATLATARTAYP 347

Query: 356 AISVLSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
              V+    PH   R  A+ G+    +G + +    ++    S   I      G +   L
Sbjct: 348 DRRVVVAFQPHRFSRTQALFGEFCHVLGTVDKLLLTEIYP-ASEKPI-----PGVNGQNL 401

Query: 415 KDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + +     V Y +  D +   +   L  GD+ +
Sbjct: 402 AQGIRQVSDADVSYFQNFDEMVAALPDILKPGDLFL 437


>gi|304413644|ref|ZP_07395088.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
 gi|304283735|gb|EFL92129.1| UDP-N-acetylmuramate:L-alanine ligase [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 134/415 (32%), Gaps = 51/415 (12%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VVV++ +  +   +       IPV        A   LA   R R     IA+ G+
Sbjct: 77  QGASVVVVSSAIPENNVEIVAARAARIPVI-----RRA-EMLAELMRYRHG---IAVAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+    +        +                     + I E   S    + 
Sbjct: 128 HGKTTTTAMVASIYADAGLDPTFVNGGLVKAAGVHARLGC---SRYLIAEADESDASFLH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+  +    E +          L   G   +  DD+    +
Sbjct: 185 -----LQPMVAIVTNIEADHMDTYQGNFENLKQTFINFLHHLPFYGRAVMCIDDARIREI 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +      + I ++G S +AD Q++ ++Q   Q    +   GK+   V           
Sbjct: 240 LPRI----GRHITTYGFSDDADIQIKDYQQQQAQGCFTLCRPGKTELKVMLNAPGCHNAL 295

Query: 296 MLMTLGIVSILTADVDTAI-KALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNAN 349
                  V+      D  I  AL+ F     R              +    ++ + Y  +
Sbjct: 296 NAAAAIAVATEERISDDCILTALANFQGTGRRFDFLGHFSLEKVNGKKGSVMLVDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWL 406
           P  +   I       P        V+         +   + D A+VL+  ++     V+ 
Sbjct: 356 PTEVAVTIKAARAGWPEK----RIVMIFQPHRYSRTHDLYDDFAKVLAEVDVLLMLNVYA 411

Query: 407 SGF------HVLALKDAL----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +G          +L   +    P  +   +    + L   +   L D D+V+++ 
Sbjct: 412 AGEKPIPGADSRSLCRTIRVRNPDQLEPIFISDNEALLDILAKQLNDNDLVLIQG 466


>gi|261206518|ref|ZP_05921218.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289565428|ref|ZP_06445877.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|294614711|ref|ZP_06694613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|294618991|ref|ZP_06698486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
 gi|260079228|gb|EEW66919.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium TC 6]
 gi|289162757|gb|EFD10608.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium D344SRF]
 gi|291592449|gb|EFF24056.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1636]
 gi|291594652|gb|EFF26034.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1679]
          Length = 453

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L          RPHIAVIT I  AH+      +E   AK  + + + + 
Sbjct: 164 DKIVMELSSFQLM----GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEK 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLILNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDYSIYYKKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L  FH    R    +         
Sbjct: 271 EISELGVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G            + SL  
Sbjct: 328 FYNDSKATNILATKMALSGFETTKV-------VLLAGGLDRGNTFDEL------IPSLKG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDVV++    +S   
Sbjct: 375 IKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNRLK 453


>gi|330957972|gb|EGH58232.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 448

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 116/348 (33%), Gaps = 30/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA +IAITGS  K+T   ++     +  K      +   ++G P     +  DV+
Sbjct: 103 FARHAKAPVIAITGSNAKSTVTTLVGEMAIAAGKRV----AVGGNLGTPALDL-LSDDVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +   +A +  I+  H+  +SG+     AK  IF G  +  
Sbjct: 158 LYVMELSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++         ++FG +   DF     ++ + + ++  Q +    
Sbjct: 214 VNRQDA--------LSRPLIGEGLPCWTFGLNTP-DFHGFGLREENGEKYLAFQFENLMP 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    D  + +L  F   E R +  R          
Sbjct: 265 VRELKVRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHRCQWLREREGVH---Y 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +    ++ +  +    +G+ + + G   +  + S              + 
Sbjct: 322 YNDSKATNVGAA---LAAIEGLGADIDGKLVLIAGGDGKGADFSG------LRAPVAKHC 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L G     +   L  ++ +   +T+             GD V++
Sbjct: 373 RAAVLLGRDAELIAQVLGDAVPLVRVDTLQAAVGRSAELARSGDAVLL 420


>gi|304411645|ref|ZP_07393257.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|307306303|ref|ZP_07586048.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
 gi|304349833|gb|EFM14239.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS183]
 gi|306911176|gb|EFN41603.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           BA175]
          Length = 439

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 129/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   V     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++               +   +IGVP     +  + D  + EL    L      TH
Sbjct: 122 TVTTLVGEMAREAGIAV----AVGGNIGVPALDL-LHENADLFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A    I+  H+  +S I     AK  +++          +      E +   S 
Sbjct: 173 SLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQSRAVLFNRDDKLTVPPEPMNQNSF 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L       +G                  S +               IG H   N+L  +
Sbjct: 233 GLAAPEADEWGI---------------SDSKIYHGSSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V  +  D     K    F     R         +   T +++S   N  +  AA+  L
Sbjct: 278 ALVDAVGVDKQVMAKVARSFTGLSHRC---EVVGIKNGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G     G+   +    L   ++L  ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++ V   +TM             GD+V++    +S             F  L+  L
Sbjct: 384 AVKV---DTMAAAVTKAAELATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|229117409|ref|ZP_04246785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
 gi|228666019|gb|EEL21485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock1-3]
          Length = 450

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 116/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GRKHPIIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K I+S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKIIFSTAKENEDGACIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  +     +   +T+D   +   +   +GDV+++
Sbjct: 374 ALVTFGQTAPKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|85712532|ref|ZP_01043580.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
 gi|85693666|gb|EAQ31616.1| UDP-N-acetylmuramate-alanine ligase [Idiomarina baltica OS145]
          Length = 489

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 135/403 (33%), Gaps = 36/403 (8%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV++ +      L       +  V  A   LA   R R     IA+ G+ GKTTT
Sbjct: 79  GADVVVVSSAIKPDNVELDAAQQQRIPIVRRA-EMLAELMRFRHG---IAVAGTHGKTTT 134

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++    +  ++    +     +               + I E   S    +      +
Sbjct: 135 TSLVASVFAQAERDPTFVIGGLLNS---AGSNARLGSSKYLIAEADESDASFLH-----L 186

Query: 183 RPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +P +AV+T I   H+  +      +     +    L   G   +  DD     L  +   
Sbjct: 187 QPMVAVVTNIEADHMDTYGGDFSRLLDTYVDFLHNLPFYGLAVMCIDDPAVRELIPRVGR 246

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTL 300
             I    ++G S++AD +   + Q   QS  +V   G +   V  +  G H   N L  +
Sbjct: 247 QAI----TYGFSEDADVRAVDYHQHQGQSHFKVLRDGHAPLNVSLNLPGRHNVLNALAAV 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            + S    + D   +AL+ F     R + +      G+ T   +              V 
Sbjct: 303 AVASDEGIEDDAIQRALNKFEGIGRRFEYHGECRVSGWSTETPDGVMVVDDYGHHPSEVD 362

Query: 361 SQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
           + I    +G      V+         ++  + D   VLS   +  + L            
Sbjct: 363 ATIKAARQGWPDKRLVMAFQPHRYSRTRDLYEDFVNVLSQ--VDTLLLLEVYGAGETPIS 420

Query: 408 GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           G    +L  ++ +   +   Y    D L   I   L  GD+++
Sbjct: 421 GADSRSLCRSIRQRGQLDPIYVSDTDALLEIIGDVLQPGDLLL 463


>gi|207092460|ref|ZP_03240247.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 467

 Score = 64.1 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 126/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 141 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDNKSEIYIA 200

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 201 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 255

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ +         
Sbjct: 256 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEIFIDSVWERFET 307

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 308 KILGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S        + +         
Sbjct: 364 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNETLAQKIDGV----FDVAI 415

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 416 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 459


>gi|298377157|ref|ZP_06987111.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
 gi|298266141|gb|EFI07800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_19]
          Length = 445

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 107/345 (31%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 102 DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 158 LSSFQLD----NMYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H               A+      K  +E + + ++    +  +  
Sbjct: 214 WNDDPIIAREIAKRHPEAT-------LYPFAETYENGVKGYTENNQVVIETVNGTFTMEQ 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L              K  +      G   R    L       I++S
Sbjct: 267 DLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRLEKVLRVRGVDYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E+++   +  + 
Sbjct: 327 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELVNK-KVHSLI 373

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 374 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|219558136|ref|ZP_03537212.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase murF
           [Mycobacterium tuberculosis T17]
          Length = 268

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 89/220 (40%), Gaps = 3/220 (1%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             TII ITGS GKT+TK+++   L+ + +  A  GS+NN +G P T+ R     D+ I E
Sbjct: 51  GLTIIGITGSSGKTSTKDLMAAVLAPLGEVVAPPGSFNNELGHPWTVLRATRRTDYLILE 110

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +   H G I  L  +  P I V+  +  AHL  F   E IA  KAE+ + +  +G + LN
Sbjct: 111 MAARHHGNIAALAEIAPPSIGVVLNVGTAHLGEFGSREVIAQTKAELPQAVPHSGAVVLN 170

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     +   + A  ++          A             +      Q    EV   
Sbjct: 171 ADDPAVAAMAKLTAARVVRVSRDNTGDVWAGPVSLDELARPRFTLHAHDAQ---AEVRLG 227

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             G H   N L    +     A V+    AL+   P    
Sbjct: 228 VCGDHQVTNALCAAAVALECGASVEQVAAALTAAPPVSRH 267


>gi|281424945|ref|ZP_06255858.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
 gi|281400789|gb|EFB31620.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella oris
           F0302]
          Length = 443

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 113/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + ++ ITGS GKTTT  ++     S             +IG  L L       ++ + E
Sbjct: 101 HSKMVCITGSNGKTTTTSLIYHIFKSAGYDV----GLAGNIGKSLALQVAEDPHEYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    E  A AK  I +      +   
Sbjct: 157 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDFKFENYADAKMRIIQNQTPEDSFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         +S  K K +   +       E             +   
Sbjct: 213 WNDDPVIKKELEKFEIKAYACPFSELKEKGSIGYIEAGTYKLE-----YPTPFNMEQEAL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     +   K+LS F   E R ++            I++S
Sbjct: 268 SLTGKHNIYNSLAAGLASNIAGIKKEIIRKSLSDFPGVEHRLEKVCKVGGVQ---YINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           + +LG     G+   + +  + + L       + 
Sbjct: 325 KATNVDACWYALESMKT-------PTVLILG-----GKDKGNDYTPI-KELVKKKCRGLV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     L D      + V  + +M             GD V++    +S         
Sbjct: 372 YLGADNKKLHDNFDALGLPVKDTHSMKDCVEACHEMAKSGDTVLLSPCCASFDLFHNMEE 431

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 432 RGNMFKDLVRGL 443


>gi|153809197|ref|ZP_01961865.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
 gi|149128173|gb|EDM19393.1| hypothetical protein BACCAC_03508 [Bacteroides caccae ATCC 43185]
          Length = 444

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 120/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEDHHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK         ++  K   A   +   +       +   +     +   
Sbjct: 213 WNDDPIIRHELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFRGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L D   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHDFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFNSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKYVREL 444


>gi|260687887|ref|YP_003219021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
 gi|260213904|emb|CBE05944.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile R20291]
          Length = 451

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 87/289 (30%), Gaps = 28/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF        
Sbjct: 161 LVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDF 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD   + L  K +A      +S  K  N    L       +       L    + 
Sbjct: 217 CVLNYDDEVVKSLADKCNAK--VIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +       +        + I  +   D++     L  F   E R        N      +
Sbjct: 275 LPGGHNLENCM----AAIAIAYVCKIDLEVTKDVLMTFKGVEHRQ---EFVRNLDNVIYV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   AI              I + G M + G              +   + 
Sbjct: 328 NDSKGTNPDSTIKAIQSYD-------RPIILIAGGMDK-GSNFDELLET-----AKSYVK 374

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G     +++         +H  + M+            GD+V++
Sbjct: 375 SLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|254779283|ref|YP_003057388.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
 gi|254001194|emb|CAX29160.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase;
           putative membrane protein [Helicobacter pylori B38]
          Length = 493

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/344 (19%), Positives = 126/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGIANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDS-----KHLE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLINVSSL--------VKNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKYLGLETERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNVESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|322391625|ref|ZP_08065094.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
 gi|321145708|gb|EFX41100.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           peroris ATCC 700780]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 78/390 (20%), Positives = 138/390 (35%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA------RLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K            L S+A I+ ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIKKALEKGMPVWTEVELAYLISEAPIVGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +   +   D D  + EL    L  I      
Sbjct: 127 TTMIGQVLTAAGQN----GLLSGNIGYPASHVAQTATDKDTLVMELSSFQLMGIE----S 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      E   +AK  I + +     + LN++    + L  K+ A
Sbjct: 179 FHPEIAVITNLMPTHIDYHGSFEAYVAAKWNIQKNMTAADYLVLNFNQDLAKELAEKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 SVVP----FSTLEKVDG------AYLENGLLYFRGEAVMAADEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  I   D +T  + LS F   + R +              ++S + N  +         
Sbjct: 289 VAKIRGVDNETIKETLSAFGGVKHRLQYADEINGVK---FYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDIK--GLKKMVILGQSAERVKRAADKA 392

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V Y +   +             GD+V++
Sbjct: 393 G-VEYVDATDIADATRKAYHLAGTGDIVLL 421


>gi|289166080|ref|YP_003456218.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
 gi|288859253|emb|CBJ13187.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella longbeachae
           NSW150]
          Length = 469

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 151/428 (35%), Gaps = 38/428 (8%)

Query: 53  GHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      + KGA +VV       N   + +     IPV        A+  LA   R R 
Sbjct: 66  GHK--AEHI-KGADVVVRSSAVEWNNPEIVAAREQMIPVI----PRAAM--LAELMRFRH 116

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  +++  L+      + +     +    L +        + + E
Sbjct: 117 G---IAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIGGKLNS---LGINAQLGQSPYFVVE 170

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S           ++P +A++T I   H+  + +  E++ +   E    L   G+  +
Sbjct: 171 ADES-----DASFLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSAVV 225

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     +            Y F +  +         +   +  +        +++  
Sbjct: 226 CIDDPEVRKIL--PFIERPTLTYGFTEEAHYRAIDWTQNELISEFTVIRPKSYSPLKIQF 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L ++ I + L  D ++ I+AL  F     R +       +    L+ + 
Sbjct: 284 QYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSALVVDD 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + + I     + P+ +              +  Q   +D+  +     +  ++
Sbjct: 344 YGHHPQEILSTIDAFRHVWPN-KRLVHVFQPHRYTRTQELQEQFVDVLSLADELFLFDIY 402

Query: 406 LSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +G       +  +L + +  +           L   +  S+ +GDV++++ + S G  +
Sbjct: 403 SAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVILIQGAGSIG--Q 460

Query: 460 LINLLLEE 467
           +   L++E
Sbjct: 461 IAVNLMQE 468


>gi|270159084|ref|ZP_06187740.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
 gi|269987423|gb|EEZ93678.1| UDP-N-acetylmuramate--alanine ligase [Legionella longbeachae
           D-4968]
          Length = 458

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 71/428 (16%), Positives = 151/428 (35%), Gaps = 38/428 (8%)

Query: 53  GHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      + KGA +VV       N   + +     IPV        A+  LA   R R 
Sbjct: 55  GHK--AEHI-KGADVVVRSSAVEWNNPEIVAAREQMIPVI----PRAAM--LAELMRFRH 105

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  +++  L+      + +     +    L +        + + E
Sbjct: 106 G---IAVAGTHGKTTTTSLVSSVLAEGGLDPSFVIGGKLNS---LGINAQLGQSPYFVVE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
              S           ++P +A++T I   H+  + +  E++ +   E    L   G+  +
Sbjct: 160 ADES-----DASFLFLKPMMAIVTNIDADHMGTYENNFEKLRTTFLEFLHHLPFYGSAVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     +            Y F +  +         +   +  +        +++  
Sbjct: 215 CIDDPEVRKIL--PFIERPTLTYGFTEEAHYRAIDWTQNELISEFTVIRPKSYSPLKIQF 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L ++ I + L  D ++ I+AL  F     R +       +    L+ + 
Sbjct: 273 QYPGRHNVLNALASIAIATQLGVDDNSIIRALEKFQGVGRRFQMLGEKKFEKGSALVVDD 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + + I     + P+ +              +  Q   +D+  +     +  ++
Sbjct: 333 YGHHPQEILSTIDAFRHVWPN-KRLVHVFQPHRYTRTQELQEQFVDVLSLADELFLFDIY 391

Query: 406 LSGF------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +G       +  +L + +  +           L   +  S+ +GDV++++ + S G  +
Sbjct: 392 SAGESEIPGVNSESLAEKIRNNDKKVTLVDERSLKKNLDQSVKEGDVILIQGAGSIG--Q 449

Query: 460 LINLLLEE 467
           +   L++E
Sbjct: 450 IAVNLMQE 457


>gi|206976740|ref|ZP_03237644.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217961334|ref|YP_002339902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus AH187]
 gi|229140561|ref|ZP_04269116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
 gi|226711882|sp|B7HM33|MURD_BACC7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|206745050|gb|EDZ56453.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           H3081.97]
 gi|217063256|gb|ACJ77506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH187]
 gi|228643122|gb|EEK99398.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BDRD-ST26]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L          L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNKAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|138894653|ref|YP_001125106.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266166|gb|ABO66361.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 440

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/391 (17%), Positives = 118/391 (30%), Gaps = 45/391 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVL--GALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++      + +  IP     + L   AL K          A   S+A  I ITGS GKT
Sbjct: 57  LLDEPFDLVVKNPGIPY---TNPLVEKALEKGLPIVTEVELAYRISEAPFIGITGSNGKT 113

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   L +  +     G+      V   +A+      + + EL    L  I     
Sbjct: 114 TTTTLIYEMLKADGQDPLLAGNIGL---VACEVAKEAKPDQWLVTELSSFQLAGIDEF-- 168

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP IAV+  I  AHL      E  A+AKA IF          +N DD     + +   
Sbjct: 169 --RPRIAVLLNIFDAHLDYHGTKEAYAAAKANIFRNQTAHDYAVVNADDPLVMDIVSSVR 226

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +   +S  K       ++          +               I      N+   L
Sbjct: 227 AQKVL--FSVTKPLGEGAYVQDGTVYWNGESVIQ----------IADIVLPGQHNLENIL 274

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V+       +      V     G   R +           ++S   N  + + A++  
Sbjct: 275 AAVAAAKLAGASNEAIRRVLTTFTGVKHRLQYVAEVDGRRFYNDSKATNILATQKALAAF 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +                +   G    +    L   L    +  + L G     +      
Sbjct: 335 ADEPVI-----------LLAGGLDRGNEFDALLPYLQQ--VKAMVLFGQTAAKIGRVARE 381

Query: 421 SI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    V Y + ++            GDV+++
Sbjct: 382 AGIETVEYVDNVEKAVPVAFRLSEPGDVILL 412


>gi|15675424|ref|NP_269598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes M1 GAS]
 gi|71911066|ref|YP_282616.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pyogenes MGAS5005]
 gi|81174547|sp|P0C0D8|MURD_STRP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13622612|gb|AAK34319.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptococcus pyogenes M1 GAS]
 gi|71853848|gb|AAZ51871.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pyogenes MGAS5005]
          Length = 452

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 134/395 (33%), Gaps = 55/395 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDD--VLGALNK---------LAVAARLRSKATIIAITGSV 117
           +++ +    + +  IP    D+  V  AL K         LA      S+A II ITGS 
Sbjct: 68  LLDENFEYMVKNPGIPY---DNPMVKRALAKEIPILTEVELAYFV---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  M+   L++           + +IG P   + +  +  D  + EL    L    
Sbjct: 122 GKTTTTTMIADVLNA----GGQSALLSGNIGYPASKVVQKAIAGDTLVMELSSFQL---- 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              +  RPHIAVIT + P HL      E+  +AK  I   + ++  + LN +      L 
Sbjct: 174 VGVNAFRPHIAVITNLMPTHLDYHGSFEDYVAAKWMIQAQMTESDYLILNANQEISATLA 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +         Q        +   +  + Q           G H  +N 
Sbjct: 234 K----------TTKATVIPFSTQKVVDGAYLKDGILYFKEQAIIAATDLGVPGSHNIENA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L T+ +  +     D   + LS F   + R    +        T  ++S + N  +    
Sbjct: 284 LATIAVAKLSGIADDIIAQCLSHFGGVKHRL---QRVGQIKDITFYNDSKSTNILA---- 336

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S     R I + G     G    +   DL   L    +  + + G     +K 
Sbjct: 337 --TQKALSGFDNSRLILIAG-----GLDRGNEFDDLVPDL--LGLKQMIILGESAERMKR 387

Query: 417 ALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
           A  ++  V Y E   +             GD +++
Sbjct: 388 AANKA-EVSYLEARNVAEATELAFKLAQTGDTILL 421


>gi|194335053|ref|YP_002016913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
 gi|194312871|gb|ACF47266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Prosthecochloris
           aestuarii DSM 271]
          Length = 469

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/359 (15%), Positives = 102/359 (28%), Gaps = 26/359 (7%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           + A        A IIA+TG+ GKTTT  ++    +              +IGVP +    
Sbjct: 102 EAASWF---CPARIIAVTGTDGKTTTATLIAAICADHALAAGYRVFSVGNIGVPFSSMVG 158

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E+    L          RP IA++T I P HL  + G   + +       
Sbjct: 159 SMASGDIAVVEVSSYQL----EGCTWFRPDIALMTNITPDHLDRYDGSMRLYAEAKYRIF 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++     +   D      + +     +  + +FG               +E  W+ + 
Sbjct: 215 SRQRQDDTLIVNADDPILRQRFEERLGVVPQLAAFGLDAGRTRAFAASGAVTEGGWITLF 274

Query: 276 LQGKSMEVVHHGIG-----YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             G   E V          +    N+   L       A                G   R 
Sbjct: 275 KSGSLDERVIAHEDLLKRGFMGRHNLSNALAAALAADAAGVPLSSIKRALKAFGGVEHRQ 334

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   N  +M+ A+  +        G  + + G     G      + 
Sbjct: 335 EYVCEIDGVICINDSKATNLNAMRQALEAV-------SGPVVLIAG-----GRDKDGDYR 382

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L   L    +  +   G        A   S+    + ++             G  ++ 
Sbjct: 383 EL-RDLVASKVEMLVALGEAADRFTGAYGESVPAVTAGSLREAVRLGLQHARRGSTLLF 440


>gi|297156474|gb|ADI06186.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces
           bingchenggensis BCW-1]
          Length = 476

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 76/435 (17%), Positives = 147/435 (33%), Gaps = 48/435 (11%)

Query: 33  DSRSIAPQEAFFAIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SI 83
           DS ++       A++  G     GH      +   A  VVV++ + A    L       I
Sbjct: 45  DSPTVE------ALRALGVTVHIGH--AAEHLAADATSVVVSSAIRADNAELTAAAERGI 96

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           PV    D L  L   A           IA+ G+ GKTTT  ML ++L+++    +     
Sbjct: 97  PVIHRSDALAGLMDGARP---------IAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIGG 147

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           +                +  + E   S     ++      P +A+I  +   H +N++ +
Sbjct: 148 DLD---APGSNAQHGGGEIFVAEADESDRSFHKYA-----PEVAIILNVELDHHANYASM 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           EEI  +     E +   GT+ ++ D      L  +        + ++G+   AD ++   
Sbjct: 200 EEIHESFQTFVERIRPGGTLVVSADHPGARELTGRVTGREGLRVLTYGEDPGADVRVLDI 259

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            Q    S + V L                 ++  +         A +    + L+     
Sbjct: 260 AQRGLTSEVTVLLPDALGGGELTFTVSVPGRHYALNAVAALTAGAALGVPARELAPALGS 319

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
               +R            + +SY  +P  + A +  +      G+GR + V      +  
Sbjct: 320 YTGVRRRLQLKGVAAGVQVIDSYAHHPTEISADLEAIRG--GAGDGRVLVVFQP--HLFS 375

Query: 384 LSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALPRSIHVHYSE-TMDGL 433
            ++   +++ + L+L + S V          + G     + DA  R      +E     +
Sbjct: 376 RTRELGVEMGQALALADASVVLDIYPAREDPVPGITSALIIDAAARHGADVVAEHDRTAV 435

Query: 434 FLFIQSSLVDGDVVV 448
              I      GD+V+
Sbjct: 436 PELIAGMAKPGDLVL 450


>gi|222097358|ref|YP_002531415.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Bacillus
           cereus Q1]
 gi|254766038|sp|B9IVY9|MURD_BACCQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221241416|gb|ACM14126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Q1]
 gi|324327812|gb|ADY23072.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 450

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|313115620|ref|ZP_07801078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310622069|gb|EFQ05566.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 467

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 115/385 (29%), Gaps = 51/385 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVD 159
                   I+A+TGS GKTTT  +++    +  +     G+        +P         
Sbjct: 113 FFDFCPCEIVAVTGSDGKTTTTTLISKFYEAAGRKVHLGGNIGAALLPMLPEVAPE---- 168

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P+IAV+T + P HL +   ++E   AK  I    ++
Sbjct: 169 -DVAVVELSSFQL-----ISMHSSPNIAVVTNVTPNHLDHHKDMQEYIDAKRNILLYQKQ 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L Y++     +++      +           A  +      C  +  +      +
Sbjct: 223 PCRAVLGYENEISRSMQSDCKGKQVWFTRLHDTDNGAFLRKEDNMLCMAEDGVVTPFLAQ 282

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
               +               L   +              V     G   R          
Sbjct: 283 KDVKLRGLHNIEN-------LLAAAAAVWGEVPVEAIQKVGSTFTGVEHRIEPVRTLDGV 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   +P    A +   +Q      G            G      +  LA  +   
Sbjct: 336 LYYNDSIGTSPTRTIAGLRSFNQKVILIAG------------GYDKHIPYEPLAPEVV-A 382

Query: 400 NISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
           ++ ++ L G     ++ A+          + + +++ M       ++    GD++++  +
Sbjct: 383 HVKNLVLMGATGPRIEKAVREDPNFNEAELPIQHADNMQHAVELARACAKPGDIIILSPA 442

Query: 452 S-----------NSCGFYRLINLLL 465
           S               F +++N L 
Sbjct: 443 SASFDLYPNFEVRGREFKKIVNELK 467


>gi|302554927|ref|ZP_07307269.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472545|gb|EFL35638.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 463

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 78/423 (18%), Positives = 151/423 (35%), Gaps = 47/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV      +   +A    L IPV    D L AL
Sbjct: 49  ALRALGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELARAAELGIPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                     +    IA+ G+ GKTTT  ML ++LS++  + +     +           
Sbjct: 107 ---------MTGLRPIAVAGTHGKTTTTSMLAVSLSALGLSPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + +  + E   S     ++      P +A++  +   H +N++ ++EI  +     +
Sbjct: 155 LHGEGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFVD 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L  +  A     + ++G+S++A  ++        +S + V 
Sbjct: 210 RVTPGGTLVISADHEGAREL-TRRVAGRDVRVVTYGESQDAGVRVLSVVPQGLKSEVTVV 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L     L    +    AL+ +   + R +       
Sbjct: 269 LDGEELTFTVSVPGRHYAHNAVAALAAGVALGIPAEELAPALAAYTGVKRRLQ----LKG 324

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ + 
Sbjct: 325 EAAGVQVIDSYAHHPTEMTADLEAM----RAAAGDSRILVVFQPHLFSRTQELGKEMGQA 380

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           LSL + S V            G     + DA       V        +   I      GD
Sbjct: 381 LSLADASVVLDIYPAREDPIPGVTSELIIDAARAAGADVTPVHDKADVPSAIAGMAKPGD 440

Query: 446 VVV 448
           +V+
Sbjct: 441 LVL 443


>gi|254976246|ref|ZP_05272718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-66c26]
 gi|255093633|ref|ZP_05323111.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CIP 107932]
 gi|255315381|ref|ZP_05356964.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-76w55]
 gi|255518046|ref|ZP_05385722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-97b34]
 gi|255651162|ref|ZP_05398064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-37x79]
 gi|260684228|ref|YP_003215513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
 gi|306521010|ref|ZP_07407357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-32g58]
 gi|260210391|emb|CBA64782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile CD196]
          Length = 451

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 87/289 (30%), Gaps = 28/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP ++ I  I   HL+    +E+   AKA IF        
Sbjct: 161 LVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKANIFMNQTVEDF 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD   + L  K +A      +S  K  N    L       +       L    + 
Sbjct: 217 CVLNYDDEVVKSLADKCNAK--VIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +       +        + I  +   D++     L  F   E R        N      +
Sbjct: 275 LPGGHNLENCM----AAIAIAYVCKIDLEVIKDVLMTFKGVEHRQ---EFVRNLDNVIYV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   AI              I + G M + G              +   + 
Sbjct: 328 NDSKGTNPDSTIKAIQSYD-------RPIILIAGGMDK-GSNFDELLET-----AKSYVK 374

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G     +++         +H  + M+            GD+V++
Sbjct: 375 SLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|317178903|dbj|BAJ56691.1| D-alanyl-D-alanine-adding enzyme [Helicobacter pylori F30]
          Length = 493

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHANPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIQEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +  F+P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLEFNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKVQLENILQATTIQGDLILF 485


>gi|270340242|ref|ZP_06007559.2| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
 gi|270332137|gb|EFA42923.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Prevotella
           bergensis DSM 17361]
          Length = 497

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 120/372 (32%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I +TGS GKTTT  ++     +             +IG  L L        + I E
Sbjct: 155 HSKMICVTGSNGKTTTTSLIYHIFKNAGYDV----GLAGNIGRSLALQVAEDPHAYYIIE 210

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IA++  I P HL  +    +    AK  I     +  +   
Sbjct: 211 LSSFQLD----NMYDFRANIAILLNITPDHLDRYDYKFQNYVDAKMRIIRNQTEEDSFIY 266

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     ++  +S  K K +   + + +   E       +     +   
Sbjct: 267 WNDDPVVKKELEKYDIHAVQCPFSELKEKGSIGYIEEGQYKLE-----YPVPFNMEQERL 321

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      +I     +   K+LS F   E R ++            I++S
Sbjct: 322 SLTGKHNIYNSLAAGLASNISGIRKEQIRKSLSDFPGVEHRLEKVCDVAGVH---YINDS 378

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  ++          I ++G     G    + +  + E++    +  V+
Sbjct: 379 KATNVDACWYALESMTT-------PTILIIG-----GRDKGNNYDAIKELVKQKCVGLVY 426

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
           L G     L D      I V  + +M             GD V++    +S         
Sbjct: 427 L-GADNKKLHDNFDDLGIPVADTHSMKDCVEACYKMAKTGDTVLLSPCCASFDLFNNMED 485

Query: 453 NSCGFYRLINLL 464
               F  L+  L
Sbjct: 486 RGDQFKALVRNL 497


>gi|254480308|ref|ZP_05093556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
 gi|214039870|gb|EEB80529.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [marine gamma
           proteobacterium HTCC2148]
          Length = 455

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/348 (17%), Positives = 105/348 (30%), Gaps = 32/348 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA II ITGS  K+T  E++       K           ++G P     +  +  
Sbjct: 109 FVREAKAPIIGITGSNAKSTVTELVGDMARRAKLNV----GVGGNLGTPALDL-LDDERQ 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +AV+  ++  HL     +     AK  IF G     
Sbjct: 164 LYVLELSSFQLERAGKLGL----AVAVVLNLSADHLDRHGNMPRYHQAKHRIFMGCSTA- 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               + DD     L   S  +    +     +     + +  +  S         +    
Sbjct: 219 --VAHSDDPLTVPLLEDSVPVVGWRLGEPALNGFGLRRDQGVECLSHG------FELLMP 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +       +D  + +L  F     R +R            
Sbjct: 271 VTELAMEGRHNVANALAALALGHAAGLPLDAMLDSLRHFAGLPHRCER----------VA 320

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + E+      S    I   +       G    VL      G+   +   +L       + 
Sbjct: 321 VIEAVCFVNDSKGTNIGATNAALTGIGGEHNIVL---IAGGQGKGADFREL-RGTVQKHC 376

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            HV L G     ++ AL   + V   +TM+      +     GD+V++
Sbjct: 377 KHVVLIGEDAPKIEAALADVVEVTRVDTMEQAVALAEKQASAGDIVLL 424


>gi|150009088|ref|YP_001303831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937512|gb|ABR44209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parabacteroides
           distasonis ATCC 8503]
          Length = 445

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 105/345 (30%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 102 DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  +  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 158 LSSFQLD----NMYDFKADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H               A+      K  +E + + ++    +  +  
Sbjct: 214 WNDDPIIAREIAKRHPEAT-------LYPFAETHENGMKGYTENNQVVIETANGTFTMEQ 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L              K  +      G   R    L       I++S
Sbjct: 267 DLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRLEKVLRVRGVDYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E L    +  + 
Sbjct: 327 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEI-EELVSKKVHSLI 373

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 374 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|56684727|gb|AAW22050.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori]
          Length = 493

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK+ L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 HLKVIAITGSFGKTSTKKFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHKGRKVIVTPGLVESNTESNEVLAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASKLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|325688217|gb|EGD30236.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK72]
          Length = 459

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 124/346 (35%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+  AL++  +     G  + +IG P +         D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQALTAGGQN----GLLSGNIGYPASQVAQTASSKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +E  A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIE----DFHPQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A     +    +  +        S    GD+V++
Sbjct: 385 VILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|301310866|ref|ZP_07216795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
 gi|300830929|gb|EFK61570.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           20_3]
          Length = 445

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 108/345 (31%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 102 DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 158 LSSFQLD----NMYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H       ++              +   E     V       + + 
Sbjct: 214 WNDDPIIAREIAKRHPKATLYPFAETHENGVKGYTENNQVVIE----TVNGTFTMEQDLL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L +     I+    +    +LS F   E R       L       I++S
Sbjct: 270 ALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRL---EKVLRVRGVDYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E+++   +  + 
Sbjct: 327 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELVNK-KVHSLI 373

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 374 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|126643214|ref|YP_001086198.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase
           [Acinetobacter baumannii ATCC 17978]
          Length = 414

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 123/389 (31%), Gaps = 45/389 (11%)

Query: 95  LNKLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           + +       ++       IIA+TG+ GKTT   ++   L S ++    +     +  +P
Sbjct: 1   MGEWQKRYLQQADVVKPLRIIAVTGTNGKTTISRLI-AELISSQQQRCAVMGTTGNGILP 59

Query: 151 LTLARMPVD----------VDFGIFE-----LGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                               D+         L  S  G  +   +     IAV + ++  
Sbjct: 60  NLTPSTHTTLDALQLQNALHDYAKQGATFASLEASSHGLEQGRLNGCDIEIAVYSNLSRD 119

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     +E  A AKA +F+       +    D     ++K+  +      I ++  ++N
Sbjct: 120 HLDYHGTLEAYAEAKARLFQFNSLKVAVINLDDAHADLMIKSAQNNPAQPKILTYSLTQN 179

Query: 256 A-DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D+ +         +   +  Q  S  V    +G+   +N++  L        D    +
Sbjct: 180 TADYYITDLSYSLAGATFNLVSQQGSFAVESPLLGHFNVENLIAALIAAEQAGFD----L 235

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL  F PK          +       + +  +   A     I VL  +  H   +  AV
Sbjct: 236 QALVNFVPKLIGAPGRMQVIRDDERLFVVDYAHTPDA----LIQVLKTLKRHVSNQLWAV 291

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALP-RSIHV 424
            G     G         L    +L   + V L+  +            +K  +      +
Sbjct: 292 FG----CGGDRDRGKRPLMTQAALDGANPVILTSDNPRTEDPEQIFADMKQGIDFSGHRM 347

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           H          F+      GD+VV+  K 
Sbjct: 348 HEIHDRREAIKFVAEQAQAGDIVVIAGKG 376


>gi|170761088|ref|YP_001788857.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum A3 str. Loch Maree]
 gi|226711901|sp|B1KTB9|MURD_CLOBM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169408077|gb|ACA56488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 458

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSD 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNGMENE--ALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEIC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNEVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISHKKCEMEIVIVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNSL 458


>gi|89256891|ref|YP_514253.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315270|ref|YP_763993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503068|ref|YP_001429133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010673|ref|ZP_02275604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254368162|ref|ZP_04984182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|290953242|ref|ZP_06557863.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295313535|ref|ZP_06804126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica URFT1]
 gi|122063246|sp|Q2A1Z9|MURD_FRATH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122324734|sp|Q0BKM8|MURD_FRATO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166224761|sp|A7NDX4|MURD_FRATF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89144722|emb|CAJ80053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130169|gb|ABI83356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253972|gb|EBA53066.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica 257]
 gi|156253671|gb|ABU62177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 416

 Score = 64.1 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 70/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                                                +            D         
Sbjct: 187 KQ---------------------------------SKLNLAKFSNDFFVYDVHNGIKYAG 213

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q       +  +  +           N+   + +++IL        +A+      +G 
Sbjct: 214 EYQIIRGAIYRNSTKLLDIVETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 273

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 274 EHRCKIVKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 329 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 382

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 383 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 415


>gi|206895846|ref|YP_002247446.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
 gi|206738463|gb|ACI17541.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase,
           putative [Coprothermobacter proteolyticus DSM 5265]
          Length = 433

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 97/350 (27%), Gaps = 30/350 (8%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
             S D R     + FFA  G H+D    I   ++  A L++   +   S       V   
Sbjct: 22  NFSSDDRWFMDGDIFFAFTGAHFDARTLIPE-LKNKAKLIITEKEATGSN------VIYR 74

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            D      K   A        ++ ITG+ GK+T    L+  L         I + +    
Sbjct: 75  PDARQIYKKFIKAGAKVYPLHVLGITGTKGKSTIAWWLSSLLGFGYMGTLGIRAKDVKFV 134

Query: 149 VPLTLARM--------PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
           +P T                D  + EL    L         +     V TT  P H+   
Sbjct: 135 LPTTTTGADALFNTYRRTGEDHWVVELSSIGL---AEDRLPLPLEGLVWTTFEPEHMDYH 191

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
                   AK + F  L+K     L  +    ++              +       +F +
Sbjct: 192 KTTYAYFLAKKKAFSYLKKGTFALLGQNVPQADI---------GTPYLTLRYGDTGNFYI 242

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              ++   +  +++        V     G   A + + T+    +      T ++     
Sbjct: 243 LDRREYEWEQEVKIYTPQGPSVVHIPMPGKVFAHDAVGTVAAAFLWK---GTKLEGEFPS 299

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            P                F    ES +A   ++         +     G 
Sbjct: 300 VPVRMNHVIINGIEMVIDFAHTPESIDACLQTVAQRWGNDFVVIHGATGY 349


>gi|238021216|ref|ZP_04601642.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
 gi|237868196|gb|EEP69202.1| hypothetical protein GCWU000324_01114 [Kingella oralis ATCC 51147]
          Length = 472

 Score = 63.7 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 78/419 (18%), Positives = 143/419 (34%), Gaps = 33/419 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +VV +T +      +   +     V+     LA   R R     IAI G+ GKTTT 
Sbjct: 64  GAEVVVASTAIKQDNPEIQAAIARHIPVIPRAMMLAEIMRFRES---IAIAGTHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            +    L +       I                     + + E   S           + 
Sbjct: 121 SLTASILGAAGLDPTFIIGGKL---TAAGTNAKLGKGTWMVAEADES-----DASFLYLS 172

Query: 184 PHIAVITTIAPAHLSNFSGI-EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P   VIT I   H+  ++   +++  A  +    +   G  FL  D +    +  K    
Sbjct: 173 PVFTVITNIDEDHMDTYNHDADKLRQAFIDFVHRMPFYGKAFLCIDSANVRAILPKIQKP 232

Query: 243 --GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                          ++ +    +     +        ++ +V  +  G H   N L ++
Sbjct: 233 FATYAIDDETADLWASNVRTHDAQMQFTVNRKHADNSVQTFDVTLNCAGRHNVLNALASI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISV 359
           G+     A V+   + L+ F     R + Y    L QG   L+ + Y  +P  M+A +S 
Sbjct: 293 GVALECKAPVEAIQQGLATFGGVGRRFQSYGEINLPQGGKALVIDDYGHHPVEMQATLSA 352

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHVLALKD 416
                P+       VL         ++    D   +   +    ++ V+ +G   +   D
Sbjct: 353 ARGAFPNN----RLVLAFQPHRYTRTRDLFEDFVTILNSVDALVLTDVYAAGEEPIVAAD 408

Query: 417 --ALPRSIHVH------YSETMDGLFL-FIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             AL R++ VH      Y   ++ +    + + L DGDVV+   + S    R+   L++
Sbjct: 409 SRALTRAVRVHGKLEPIYCADVNAVPETLLHNVLQDGDVVLTMGAGSI--NRVAQGLVD 465


>gi|255527653|ref|ZP_05394513.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296186918|ref|ZP_06855319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|255508666|gb|EET85046.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           carboxidivorans P7]
 gi|296048632|gb|EFG88065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/385 (17%), Positives = 123/385 (31%), Gaps = 55/385 (14%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPV 158
                   A +  +TGS GKTTT  ++   L               +IG P  T      
Sbjct: 109 EEFIKYCPAKVYGVTGSDGKTTTTTLIYNILKQQGYKTWVG----GNIGTPLFTEIEKMK 164

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + EL    L     +T  V P +AV+T ++P HL     ++E   +K  IF+  +
Sbjct: 165 SDDKVVLELSSFQL-----MTMNVSPEVAVVTNLSPNHLDIHKDMQEYIDSKKNIFKYQQ 219

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + LN D++    +  +  A G    +S  +         + K   ++       + 
Sbjct: 220 SESLLILNRDNNLTNSMFNE--AKGRVLEFSIKEKVKDGAYFEENKLYIKE-------KE 270

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L     VS      +    A+S      G   R         
Sbjct: 271 VCKLNEIQIKGMHNVENLLAAFCAVSDDVNIENMRKTAISFT----GVEHRCEFIREIDG 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   +P+   A +    +               +   G   +   +D+      
Sbjct: 327 VKYYNDSIATSPSRTLAGLKAFEK-------------PVILIAGGYDKKIPLDVLAEEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
            NI  + L G     +KDA  +        I +   E+++      +    +GD++ +  
Sbjct: 374 ENIKALILVGATKDKIKDAFSKVMKKKNIEIPMVIEESLEKALSSARGFAKEGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  L+  L
Sbjct: 434 ACASFDMFPNFEARGNKFKELVKEL 458


>gi|237734701|ref|ZP_04565182.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mollicutes
           bacterium D7]
 gi|229382029|gb|EEO32120.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Coprobacillus
           sp. D7]
          Length = 446

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 123/383 (32%), Gaps = 50/383 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLAR 155
           +LA     +     I +TG+ GKTTT  ++   L    +     G+       V L    
Sbjct: 99  ELAFQVAKKQHY--IGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LNEENHYVVIEMSNFQLLDIERF----KPYVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +      +N DD        K      +   S          + +     ++  +  +
Sbjct: 213 NTDLDDYFVVNLDDKTVMEYLEKYPVPCNQVTMSL---------IHEADCMIKEQAIYYR 263

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +G H  QN++  + I       V    + ++ F   E R         
Sbjct: 264 DELIINLADIKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVEHRI---EFVRE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                + ++S   N  +   A+    Q  I   G   +   L +M   G           
Sbjct: 321 INGVKIYNDSKATNTDATIIALKAFEQPVILLMGGFDKGLDLTEMATYG----------- 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS- 452
                  ISH+   G      K+ +    +    E ++   L        GD++++  S 
Sbjct: 370 -----NKISHLVTFGAAGERFKNDM-HVANSSSVENLEAATLLAIEKAKAGDIILLSPST 423

Query: 453 -----------NSCGFYRLINLL 464
                          F  ++N L
Sbjct: 424 SSFDEFSGYEERGRVFKNIVNKL 446


>gi|229092960|ref|ZP_04224092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
 gi|228690414|gb|EEL44199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-42]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|49479386|ref|YP_037974.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118479132|ref|YP_896283.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196035806|ref|ZP_03103208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196038844|ref|ZP_03106152.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225865894|ref|YP_002751272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228935228|ref|ZP_04098054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228947632|ref|ZP_04109922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229123426|ref|ZP_04252630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|301055403|ref|YP_003793614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           anthracis CI]
 gi|60390446|sp|Q6HEQ2|MURD_BACHK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158512491|sp|A0RHT3|MURD_BACAH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766037|sp|C1EPS6|MURD_BACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49330942|gb|AAT61588.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|118418357|gb|ABK86776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195991455|gb|EDX55421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus W]
 gi|196030567|gb|EDX69166.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           NVH0597-99]
 gi|225789057|gb|ACO29274.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus cereus
           03BB102]
 gi|228660202|gb|EEL15838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           95/8201]
 gi|228812152|gb|EEM58483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824393|gb|EEM70199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|300377572|gb|ADK06476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|30263914|ref|NP_846291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Ames]
 gi|47529344|ref|YP_020693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49186762|ref|YP_030014.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Sterne]
 gi|52141576|ref|YP_085253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus E33L]
 gi|167636572|ref|ZP_02394866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|167641133|ref|ZP_02399388.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|170688845|ref|ZP_02880048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|170709237|ref|ZP_02899658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|177655544|ref|ZP_02936954.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190565997|ref|ZP_03018916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218905043|ref|YP_002452877.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228916550|ref|ZP_04080116.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928961|ref|ZP_04091993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229604216|ref|YP_002868148.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
 gi|254721447|ref|ZP_05183236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. A1055]
 gi|254735953|ref|ZP_05193659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743848|ref|ZP_05201531.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Kruger B]
 gi|254756744|ref|ZP_05208773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Australia 94]
 gi|60389927|sp|Q636B4|MURD_BACCZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|60390084|sp|Q81WC9|MURD_BACAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711879|sp|B7JK00|MURD_BACC0 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766035|sp|C3P682|MURD_BACAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|30258558|gb|AAP27777.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. Ames]
 gi|47504492|gb|AAT33168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180689|gb|AAT56065.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. Sterne]
 gi|51975045|gb|AAU16595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           E33L]
 gi|167510913|gb|EDR86304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0193]
 gi|167527995|gb|EDR90801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0442]
 gi|170125844|gb|EDS94750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0389]
 gi|170667200|gb|EDT17960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0465]
 gi|172080073|gb|EDT65170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0174]
 gi|190562916|gb|EDV16882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           Tsiankovskii-I]
 gi|218537488|gb|ACK89886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH820]
 gi|228830768|gb|EEM76373.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228843129|gb|EEM88211.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229268624|gb|ACQ50261.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. A0248]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|323970760|gb|EGB66014.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TA007]
          Length = 438

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPHASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|262282744|ref|ZP_06060512.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
 gi|262262035|gb|EEY80733.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus sp.
           2_1_36FAA]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 38/347 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +     D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQSASGKDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL      EE A+AK  I + +     + 
Sbjct: 166 MELSSFQLMGIEAFH----PQIAVITNLMPTHLDYHGSFEEYAAAKWNIQKNMTADDYLV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +  +               +   +  + +       
Sbjct: 222 LNFNQDWAKGMASQTQATVVPFSTTEKEDG----------AYLDGDVLTFRGEAIIKVAE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGQVNEVAFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++  V Y +   +        +    GD+V++
Sbjct: 376 VILGQSAPRVKRAADQA-EVSYLDATDVRDAAHKAFALAEPGDIVLL 421


>gi|255015709|ref|ZP_05287835.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           2_1_7]
          Length = 441

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 107/345 (31%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 98  DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 153

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 154 LSSFQLD----NMYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 209

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H               A+      K  +E + + ++    +  +  
Sbjct: 210 WNDDPIIAREIAKRHPEAT-------LYPFAETHENGVKGYTENNQVVIETANGTFTMEQ 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L              K  +      G   R    L       I++S
Sbjct: 263 DLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRLEKVLRVRGVDYINDS 322

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E+++   +  + 
Sbjct: 323 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELVNK-KVHSLI 369

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 370 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 414


>gi|209696051|ref|YP_002263981.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
 gi|226706336|sp|B6ELH4|MURC_ALISL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|208010004|emb|CAQ80327.1| UDP-N-acetylmuramate--L-alanine ligase [Aliivibrio salmonicida
           LFI1238]
          Length = 487

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 152/436 (34%), Gaps = 60/436 (13%)

Query: 35  RSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFG 87
           R      + FF        GH      V+K A +VVV+T +  +   +       IPV  
Sbjct: 62  RLAEKGADIFF--------GHH--ASNVEK-ASVVVVSTAIDQANPEIVAAKENRIPVI- 109

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                 A   LA   R R     IA+ G+ GKTTT  + T   S        +       
Sbjct: 110 ----RRA-EMLAELMRYRHG---IAVAGTHGKTTTTALTTQIYSEAGLDPTFVNGGLVK- 160

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEI 206
                      +   G     ++   E       ++P ++++T I   H+  +    E +
Sbjct: 161 -------NAGTNARLGSSRFLIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFEVL 213

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                +    L   G   +  DD     L  +      + + ++G S +AD +L  ++Q 
Sbjct: 214 KQTFIDFLHNLPFYGQAVMCIDDDVVRELLPRV----SRQVITYGFSDDADVRLINYRQE 269

Query: 267 SEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++S+  VQ + ++  ++V +  G H A N    + + +    +    + AL  F     
Sbjct: 270 GQKSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDVEDSAILSALLNFEGAGR 329

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R  +           ++ + Y  +P  +   I      +  G   +  V+         +
Sbjct: 330 RFDQLGEFETGNGHAMLVDDYGHHPTEVDVTIKA----ARAGWEDKRLVMIFQPHRYSRT 385

Query: 386 QSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDG 432
           +  + D A VL   N+  +            ++G    AL   +     +   +  T+D 
Sbjct: 386 RDLYDDFANVLD--NVDVLIMLDVYSAGEKPIAGADGRALCRTIRARGKLDPIFVPTIDA 443

Query: 433 LFLFIQSSLVDGDVVV 448
           L   + + + + D+V+
Sbjct: 444 LPSVLANIIQNNDLVL 459


>gi|332366089|gb|EGJ43845.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1059]
          Length = 459

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 125/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L++  +     G  + +IG P +   +   + D  +
Sbjct: 119 SEAPIIGITGSNGKTTTTTMIAQVLTAGGQN----GLLSGNIGFPASQVAQTASNKDTLV 174

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        P IAVIT + P HL     +E  A+AK  I + +     + 
Sbjct: 175 MELSSFQLMGIEAFH----PQIAVITNLMPTHLDYHGSVEGYAAAKWNIQKNMTADDYLV 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++  + + + +++ A  +    +           +      E   +  + +       
Sbjct: 231 LNFNQDWAKEMASQTQATVVPFSTT----------EKVDGAYLEGDVLTFRGEAIMQAAE 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 281 IGVPGSHNVENALATIAVAKLRGIDNQTIKEVLSAFGGVKHRL---QYVGRVNEVAFYND 337

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   L    +  +
Sbjct: 338 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDLK--GLKKM 384

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A     +    +  +        S    GD+V++
Sbjct: 385 VILGQSAARVKRAADLAGVSYLDATDVRDAAHKAYSQSEPGDIVLL 430


>gi|312885129|ref|ZP_07744813.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367202|gb|EFP94770.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 489

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 140/418 (33%), Gaps = 40/418 (9%)

Query: 47  KGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAAR 103
           KG       +I H+      A +VV++T +      + +     +  V  A   LA   R
Sbjct: 66  KGAKV----YIGHSADNISDASVVVISTAIDDHNPEIIAARQARIPIVRRA-EMLAELMR 120

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R     IAI G+ GKTTT  ++T   S        +                      G
Sbjct: 121 FRHG---IAIAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK--------SAGASARLG 169

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGT 222
              + ++   E       ++P ++++T I   H+  +    E++     +    L   G 
Sbjct: 170 SSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYAGDFEKLKQTFIDFLHNLPFYGQ 229

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSM 281
             +  DD     L  K      + + ++G S++AD ++  + Q   +  +  V+     +
Sbjct: 230 AIVCIDDPIVRDLIPKI----SRQVITYGFSEHADVRIENYHQTGHQGQFTVVREGKPLL 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++  +  G H A N    + + +      +  + A++       R +            +
Sbjct: 286 DITLNIPGRHNALNAAAAIAVATEDDIKDEAILSAMASTQGTGRRFEHLGEFDTDKGQVM 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  +   I       P        V+         ++  + D   VL   ++
Sbjct: 346 LVDDYGHHPTEVDVTIQAARNGWPQS----RLVMIYQPHRFSRTRDLYDDFVNVLERVDV 401

Query: 402 S---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                V+ +G          AL   +     +   +      L   + + L DGD+V+
Sbjct: 402 LIMLDVYAAGEAPISGADGRALCRTIRGRGKIDPIFVRETSELPAVLANVLQDGDLVL 459


>gi|157363500|ref|YP_001470267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
 gi|167017289|sp|A8F4W9|MURD_THELT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157314104|gb|ABV33203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           lettingae TMO]
          Length = 430

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 114/371 (30%), Gaps = 56/371 (15%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+TGS GKTT+ ++L+     +            +IG P     +     + + E+  
Sbjct: 100 VIAVTGSNGKTTSCKLLSFVFQKLGLD----SYACGNIGTPAADV-LGFKTKYLVLEISS 154

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L   + L       I V+  I P HL     +E  A +K ++ E  +       +   
Sbjct: 155 FQLFWSKMLHI----DIGVVLNIQPNHLDWHPSLEHYAKSKLKLLEFSKTGIYNCSDQ-- 208

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
               ++K  S    +         K  D  + + K  + ++      Q          I 
Sbjct: 209 ---NIMKFISEKSNLCAFDPLKIRKVDDGIVYEGKYYTFKNDFLKTHQNLQNLSAILKIF 265

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
             M  ++   L I+                         R            +++S   +
Sbjct: 266 SVMNFDLKQVLEILEDFK-----------------PLKHRMEFVDEINGVVFLNDSKATS 308

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A+  +A+              I +L      G      + DL   +      HV + G 
Sbjct: 309 SAATISALENF------NSRNVILLLA-----GRGKNEDYADLIAQI-KRKAKHVIVFGE 356

Query: 410 HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCG 456
            V  L+D L    I    SE M    L        GDVV++    +S             
Sbjct: 357 MVELLRDELKLSDIPYTISENMQNAVLKAFEISEKGDVVLLSPAGASFDMYRNYQERGEH 416

Query: 457 FYRLINLLLEE 467
           F  ++ LL  +
Sbjct: 417 FINMVKLLRGK 427


>gi|55820797|ref|YP_139239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMG 18311]
 gi|55822698|ref|YP_141139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus CNRZ1066]
 gi|62900662|sp|Q5M0D5|MURD_STRT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900663|sp|Q5M4Y2|MURD_STRT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|55736782|gb|AAV60424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus LMG 18311]
 gi|55738683|gb|AAV62324.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           thermophilus CNRZ1066]
 gi|312278122|gb|ADQ62779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus ND03]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +   +   + D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----HGGKSGVLSGNIGFPASEVAQSVTNQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      EE  +AK  I   +     I 
Sbjct: 166 MELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFII 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  +++A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATQTNAQVVP----FSTVEKVDG------AYLENGGLYFKGELLMHADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + LS F   + R    +           ++
Sbjct: 272 LGVPGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRL---QFVDTIDDVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELIPDI--TGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   +  ++ +             GDVV++    +S        
Sbjct: 376 VILGESAPRVKRAADKAGVTYLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFITTVERLK 449


>gi|323575264|emb|CBY88822.1| hypothetical protein [Staphylococcus aureus]
          Length = 348

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 10/237 (4%)

Query: 53  GHDFILHAVQK---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           G+++I     K   G  L++  T           P   ++D    L KLA   RL+ K  
Sbjct: 64  GNEYIKK--DKEDLG--LIITET--YVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHP 117

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS+GK++T+ +++  L           + N    V L L +M    +F + E+ +
Sbjct: 118 VVAITGSMGKSSTRMLISAGLKD-YYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSL 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + L  +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N D 
Sbjct: 177 NALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDT 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              ++L  ++       I       +A    +  +     + + +   G+      +
Sbjct: 237 LHSDILIERAKQNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRIN 293


>gi|307731024|ref|YP_003908248.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
 gi|307585559|gb|ADN58957.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1003]
          Length = 464

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 73/472 (15%), Positives = 144/472 (30%), Gaps = 65/472 (13%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A     I       +NG++ D         F             I + V +G      
Sbjct: 42  LEAQGIRLIEGYDAEQLNGLNAD--------LFV------------IGNVVSRG------ 75

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              ++ +I    +P             L           ++A+ G+ GKTTT  MLT  L
Sbjct: 76  -NPLMEAILDRGLPYVSGP------QWLGEHVLN--GKWVLAVAGTHGKTTTSSMLTWLL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAV 188
                     G     + +   ++    D  F + E                  RP  AV
Sbjct: 127 EDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADEYDTAFFDKRSKFVHYRPKTAV 183

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  +  I +    +   + + G +  N  +   E +  +     ++   
Sbjct: 184 LNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTNGREDALERVLTRGCWSEVER-- 241

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            FG     + Q  +     ++ +       +   V     G H   N L  +     +  
Sbjct: 242 -FGVQGGWETQPAEDGVPVDERFAVYHNAERVGVVEWQVQGEHNRMNALAAIAAARHVGV 300

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               A ++L+ F   + R +             + + +  +P ++    + ++ +     
Sbjct: 301 PPAQAARSLASFRNVKRRME----VRGSVDGVTVYDDFAHHPTAI---ETTVAGLRARVG 353

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVL------ALKDALP 419
                +L     +   S +  + + +     SL +   V+  G           L +AL 
Sbjct: 354 RDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLVFGYGAPSGRDALGWNLGEALA 410

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                    + +D L   +  +   GD V+V  SN  GF  +   LL+   A
Sbjct: 411 PLGNKAQAFDNLDALVKAVVHAARPGDQVLV-MSNG-GFGGVHQKLLDALSA 460


>gi|256841648|ref|ZP_05547154.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
 gi|256736542|gb|EEU49870.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Parabacteroides sp.
           D13]
          Length = 445

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 107/345 (31%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 102 DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 158 LSSFQLD----NMYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H               A+      K  +E + + ++    +  +  
Sbjct: 214 WNDDPIIAREIAKRHPEAT-------LYPFAETHENGVKGYTENNQVVIETANGTFTMEQ 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L              K  +      G   R    L       I++S
Sbjct: 267 DLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRLEKVLRVRGVDYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E+++   +  + 
Sbjct: 327 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELVNK-KVHSLI 373

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 374 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|229075669|ref|ZP_04208651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
 gi|229098383|ref|ZP_04229328.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|229104475|ref|ZP_04235142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228678917|gb|EEL33127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-28]
 gi|228685000|gb|EEL38933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock3-29]
 gi|228707445|gb|EEL59636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           Rock4-18]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 116/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GRKHPIIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IAV   +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAVFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTAKENEDGACIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  +     +   +T+D   +   +   +GDV+++
Sbjct: 374 ALVTFGQTAPKLVRAAEKVGLDIIESVDTLDEAVVKAYAHSTEGDVILL 422


>gi|6332754|dbj|BAA86636.1| hypothetical protein [Staphylococcus aureus]
          Length = 350

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 104/237 (43%), Gaps = 10/237 (4%)

Query: 53  GHDFILHAVQK---GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           G+++I     K   G  L++  T           P   ++D    L KLA   RL+ K  
Sbjct: 64  GNEYIKK--DKEDLG--LIITET--YVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHP 117

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITGS+GK++T+ +++  L           + N    V L L +M    +F + E+ +
Sbjct: 118 VVAITGSMGKSSTRMLISAGLKD-YYPLQNRFNNNIRSAVYLLLCKMIRQPNFAVLEVSL 176

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           + L  +   ++L++P+IA++T I  AH+S F  I  I   KA IF+GL   G   +N D 
Sbjct: 177 NALNAVGNSSYLIKPNIAIVTGIGAAHMSTFKDILNIVEVKASIFDGLTPEGVAIINKDT 236

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              ++L  ++       I       +A    +  +     + + +   G+      +
Sbjct: 237 LHSDILIERAKQNTSNVITYSTHDSSATICPKSIQYSKGYTVITIDFNGQKYTYRIN 293


>gi|118581691|ref|YP_902941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
 gi|158512568|sp|A1AU63|MURD_PELPD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118504401|gb|ABL00884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelobacter
           propionicus DSM 2379]
          Length = 446

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 106/352 (30%), Gaps = 33/352 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       +A ++AITG+ GKTT   +               G+  N +   + L   
Sbjct: 100 ELASRF---IQAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL---IELLES 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              V+  + E+    L  IR      RP +A +  ++  HL  ++   E   AK  IFE 
Sbjct: 154 AEPVERVVAEISSFQLEWIR----AFRPAVAALLNLSEDHLDRYASYREYIEAKLRIFEN 209

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                   +N DD                          +  Q         +  +  + 
Sbjct: 210 QTADDYAVVNADDELVMEHS---------RGLRACLFPFSRKQELDEGIFHREGLIVWRH 260

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+       G       N+   +  ++          ++L+     E    R       
Sbjct: 261 NGREERFPTAGFRLQGVHNLENIMAALACSLLLECRPTESLACVREFEALHHRMEFVREL 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  S++ A+     I          + G   + G  S      L+ ++
Sbjct: 321 NGVRWYEDSKATNVGSVEKALESFDAI--------TLIAGGKDKGGSYSP-----LSRLV 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               + H+ L G     +++ L        + T++            G  V+
Sbjct: 368 RER-VRHLVLIGEAAGRMQEELGTLTDTRRAATLEEAVSLAAELTAPGGTVL 418


>gi|262383988|ref|ZP_06077124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
 gi|262294886|gb|EEY82818.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_33B]
          Length = 445

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 107/345 (31%), Gaps = 30/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  +    L               ++G  L L          + E
Sbjct: 102 DSKMICITGSNGKTTTTMLTYHILKEAGVDV----GLAGNVGNSLALQVAEDPHAVYVIE 157

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA+I  I P HL  ++  ++    AK  I +   K      
Sbjct: 158 LSSFQLD----NMYDFRADIAIILNITPDHLDRYNYEMQNYVDAKFRILQNQTKDDAFIF 213

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK H               A+      K  +E + + ++    +  +  
Sbjct: 214 WNDDPIIAREIAKRHPEAT-------LYPFAETHENGVKGYTENNQVVIETANGTFTMEQ 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  +L              K  +      G   R    L       I++S
Sbjct: 267 DLLALTGTHNLYNSLASGIASKIVDIHDEKIRASLSDFTGVEHRLEKVLRVRGVDYINDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++          + +LG     G    + + ++ E+++   +  + 
Sbjct: 327 KATNVNSCWYALQSMTT-------PVVLILG-----GTDKGNDYSEIEELVNK-KVHSLI 373

Query: 406 LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L       + ++  + +M+            GD V++
Sbjct: 374 FMGVDNTKLHAFFDGKVANIEDARSMEEAVAKAYKMAHKGDTVLL 418


>gi|42783006|ref|NP_980253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           cereus ATCC 10987]
 gi|60390050|sp|Q732F6|MURD_BACC1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|42738933|gb|AAS42861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 10987]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNXTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|315633815|ref|ZP_07889104.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
 gi|315477065|gb|EFU67808.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aggregatibacter
           segnis ATCC 33393]
          Length = 434

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 115/348 (33%), Gaps = 38/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   I+AITGS GK+T   ++     +   +         +IG+P     +    D
Sbjct: 98  FCREADKPIVAITGSNGKSTVTTLVAEMAKAAGLSVGMG----GNIGIPALSL-LNQSHD 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L      T+ ++   A +  +   H++ +  +++   AK +I++  +   
Sbjct: 153 IYILELSSFQL----ETTYSLKTVAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNCQTAV 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           K  +        + K++N    L        +  + +      +
Sbjct: 209 VNGEDPLTLPTTQHPEKRVSFAEHHADYWLKNENQKTYLMA------RGEVILACDEMKL 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              H+ +    A  +    GI  +           L             R          
Sbjct: 263 TGRHNYMNALAAIALAQAAGINLLGIQTALREFGGLEHRFQVAHMAHGVRWI-------- 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S  AA++ L        G+   +LG   +  + S     +LA +++  +I
Sbjct: 315 -NDSKATNVGSTVAALTGLQV-----AGKLYLLLGGDGKGADFS-----ELATLINQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S      +TM+     I+  L  GDVV++
Sbjct: 364 -FCYCFGQDGKQLAALSSQS---QLFDTMEQAIAAIRPQLQAGDVVLL 407


>gi|47565784|ref|ZP_00236823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228987057|ref|ZP_04147182.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|47557064|gb|EAL15393.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           G9241]
 gi|228772651|gb|EEM21092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRL---EYVTTISNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|311063990|ref|YP_003970715.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
 gi|310866309|gb|ADP35678.1| Mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 519

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/431 (15%), Positives = 127/431 (29%), Gaps = 39/431 (9%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 18  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
           +G    V +TD  A       P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 74  RGLAAYVADTDFSAE---TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 130

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI----------------GVPLTLARMPVDVDFGI 164
           TT       L++     A + S  ++                      + R   D     
Sbjct: 131 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 190

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I         
Sbjct: 191 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVCNSRALVL 250

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL---QGK 279
              +          A +           G+S             +       ++      
Sbjct: 251 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAAYVTASPANAEHSAYRIAAGGAD 310

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E      G     N    L I      D+     A     P    G+  +    Q   
Sbjct: 311 LGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDPQSNT 370

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I + Y  N AS+ A +  + +       R   V G     G  +     ++ E  + +
Sbjct: 371 LAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGSA---GNKAYDRRKEIVE-AAQH 425

Query: 400 NISHVWLSGFH 410
            I     +   
Sbjct: 426 RIDSFIFTAED 436


>gi|152979588|ref|YP_001345217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus succinogenes 130Z]
 gi|150841311|gb|ABR75282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           succinogenes 130Z]
          Length = 437

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 50/367 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++AITGS GK+T   ++     +             +IG+P     +  + D  + EL 
Sbjct: 109 PVVAITGSNGKSTVTTLVAEMAKADGLRAGMG----GNIGIPALSL-LDAEYDLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +R   A +  +   H++ ++ +E+   AK +I+   E       +  
Sbjct: 164 SFQL----ETTFGLRARAATVLNVTEDHMNRYADLEDYRQAKLKIYANAETAVINAEDS- 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    + +    K  +SFG+S    +     K  + + ++    +           
Sbjct: 219 -------LTQDNKQRAKRQFSFGESHADYW----LKTENGKQYLMAGREVVLPCDEVKIS 267

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L ++ +   +         AL  F   + R +    A        I++S   
Sbjct: 268 GRHNYMNALASIALAQAVGVKTHGIRTALRTFTGLDHRFQLAHLANGV---RWINDSKAT 324

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S      V +    + EG    +LG   +  + S     +L ++++   I   +  G
Sbjct: 325 NVGST-----VAALTGLYLEGNLHLLLGGDGKGADFS-----ELEKLVNKPEI-FCYCFG 373

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
               AL      S      ETM+     ++ +L  GD+V++    +S             
Sbjct: 374 QDGAALAKL---SARSQLFETMEQAVNALRPALKSGDMVLLSPACASLDQFASFEKRGDE 430

Query: 457 FYRLINL 463
           F RL  L
Sbjct: 431 FTRLAKL 437


>gi|254683377|ref|ZP_05147237.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. CNEVA-9066]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SAINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|295425114|ref|ZP_06817819.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065173|gb|EFG56076.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           amylolyticus DSM 11664]
          Length = 459

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 123/413 (29%), Gaps = 55/413 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV       +P+    +   AL+         S+A  + +TGS GKTTT  +    L
Sbjct: 86  ENPMVQKAEEKKVPII--TEPEIALSC--------SEAPYVCVTGSNGKTTTVMLTQRIL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
               +          +IGVP++         D  + E+    L         + P +A I
Sbjct: 136 DHHLQKSGHHAYAVGNIGVPISEVVPKATKDDILVVEISSFQLL----GVTDIDPKVAAI 191

Query: 190 TTIAPA-HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
             I    HL      E   +AK  +            N+D      +  K        I 
Sbjct: 192 IDIYHNVHLDYHKTFENYVNAKLNVTRFQNSADYFIANFDQKD---ILKKEKETTKAKIQ 248

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +F +  N+       +    QS   +++            G H  QN L+ + I  ++ A
Sbjct: 249 TFSEKDNSADYFIGDEYLESQSEKIMKIDD------IKLPGIHNQQNCLVAIAISKLMGA 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + D     LS F   + R            + +  +       S    I   +   P  +
Sbjct: 303 ENDDIQAVLSTFAGAKHR----------LQYVMTLDGRKIYNDSKSTNIEAATVAIPSFK 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHY 426
              + + G     G         L  +    ++  + L G     L DA  ++    +  
Sbjct: 353 QPEVLIAG-----GLDRGFTFDSLVPLFKE-HVKAIVLYGETKYLLADAARKAGIKDIVI 406

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
             T+             GDV++     +S             F   +  L  +
Sbjct: 407 ENTLQEAVPKAYELTEPGDVLLFSPACASWDQFRTFEERGDYFVSFVKELKTK 459


>gi|310642989|ref|YP_003947747.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Paenibacillus
           polymyxa SC2]
 gi|309247939|gb|ADO57506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paenibacillus
           polymyxa SC2]
          Length = 473

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 65/357 (18%), Positives = 109/357 (30%), Gaps = 27/357 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVD 161
               KA II ITGS GKTTT   +   L +             +IG PL  A +     +
Sbjct: 107 YHLCKAPIIGITGSNGKTTTTTWVGKLLEASGMN----PIVAGNIGTPLCEAAVDAKSDE 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T   +P +A +  +A  HL    G+E+  ++KA +F     + 
Sbjct: 163 WMVVELSSFQL----KGTKDFKPAVACLLNVAETHLDYHGGMEDYVASKARLFANQTASD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  +N+DDS    L     A  +    +    +  +          + +    +      
Sbjct: 219 TAVVNWDDSVCRELVPYIQAKLLPFSMT---ERLQEGLFADPPYIPDVTDDIERNIVYRD 275

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                     +    L     V    A    AI A +           +R   ++  + L
Sbjct: 276 GNGVLHPIIGVTDIGLPGRFNVENALAACAIAIAAGAEPAKLAEPLGSFRGVEHRLEYVL 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
                     S               +   + + G     G    S + +L   L    +
Sbjct: 336 EHGGVAYYNNSKATNSKATMMALSSFKQPIVLIAG-----GLDRGSDYAELVPSLQE-GV 389

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMD-------GLFLFIQSSLVDGDVVVV 449
             V L G     L D   ++   HV   +  +                   GDVV++
Sbjct: 390 KAVVLLGETRHKLADRARQAGIEHVKVVDNGEDAAATLVEAVNKAAQFAETGDVVLL 446


>gi|229186153|ref|ZP_04313322.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
 gi|228597329|gb|EEK54980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           BGSC 6E1]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTEDDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|260655415|ref|ZP_05860903.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
 gi|260629863|gb|EEX48057.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Jonquetella
           anthropi E3_33 E1]
          Length = 438

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 103/320 (32%), Gaps = 50/320 (15%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + EL    L   +       P +A++T +AP H+      E   + K ++F    K 
Sbjct: 151 DYTVMELSSFQLHWNK----SFTPQVALLTNLAPDHIDWHGSYENYVADKLKVFGRPGKG 206

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +          +  +      ++ + G ++             E+     +L  +S
Sbjct: 207 NWEIVQA--------RDAALVPSGGSVCTLGGTEGTRIYWDDQAVWLERDSGREKLFDRS 258

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +        A            L       ++ LS F P   R +  R        T
Sbjct: 259 QLSLVGQHNLENAAMAGA----ALALIDKSFAPLQGLSDFLPPPHRCQLVRVRRGV---T 311

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +D+S   N AS + A+          +G +I +LG     G+     +  LA+ +    
Sbjct: 312 WVDDSKGTNVASTRTALE-------GIDGPKIIILG-----GKGKGEKYETLAQTVKARA 359

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSS------ 452
             +V L G     ++ AL  +    +H +  M+ +          GD V++  S      
Sbjct: 360 -RNVILIGAESDKIEAALREAGVQSIHRTSCMEEVVSTADGLARPGDTVLL--SPACTSW 416

Query: 453 --------NSCGFYRLINLL 464
                       F RL+  L
Sbjct: 417 DMYQSYEQRGDHFKRLVMAL 436


>gi|307266535|ref|ZP_07548068.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918454|gb|EFN48695.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 454

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 114/360 (31%), Gaps = 35/360 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R  SKA I AITG+ GKTTT  +L     +  +          +IG PL  A
Sbjct: 96  LGEVEFAYR-FSKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVY----VAGNIGYPLIYA 150

Query: 155 RMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            M   + DF + E+    L          +P I+ I  I P HL+     E     K  I
Sbjct: 151 VMEATEGDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLNRHKTFESYRDIKGRI 206

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           FE         LN+DD     LK K+                A  +          +   
Sbjct: 207 FENQRGDEYTVLNFDDPVTWSLKNKAKCRVFPFSRKSSLENGAYVKDGSIYISVNGNA-- 264

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +        +  G H  +N L    +  +     +     L  F   E R       
Sbjct: 265 ---KKIIDIEEIYIPGEHNLENALAASSVAYLSGISANVIANTLKTFKGVEHRI---EFV 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   NP +   AI  L        G            G    S   +  
Sbjct: 319 DEINGVKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDEFV 366

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +   +  + L G     ++D   +       + ++ T++        S  +GD V++
Sbjct: 367 KAFN-GKVKKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|295706370|ref|YP_003599445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
 gi|294804029|gb|ADF41095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium DSM 319]
          Length = 449

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 109/349 (31%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  I ITGS GKTTT  ++   L              N   V   +A+     + 
Sbjct: 106 YEISEAPFIGITGSNGKTTTTTLIYKMLEE---DQKQPLIAGNIGTVACEVAQKATKDNV 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP I+++  +  AHL      EE   AKA +F        
Sbjct: 163 IVTELSSFQLMGIEK----FRPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDF 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     +KA +     K  +S          ++      +        +     
Sbjct: 219 AVINADDELV--MKASADVKATKVPFSVTAQTTEGAYIKNETIFFKD-------EEVMSL 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + +V +     +   + L+ F   + R    +           
Sbjct: 270 KDVVLPGKHNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHR---VQYVTTINKRKFY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + K A+S           +   +L    + G        +        N+ 
Sbjct: 327 NDSKATNMLATKVALSAF--------SQPTILLAGGLDRGNEFDDLKEEF------KNVK 372

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   G     ++     +    V   + +        +   + DV+++
Sbjct: 373 AVITFGETAPKIERVAKEAGIQIVKRVDNVKQAVSEAYAYSDEEDVILL 421


>gi|165872273|ref|ZP_02216910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227813178|ref|YP_002813187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. CDC 684]
 gi|254754377|ref|ZP_05206412.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           anthracis str. Vollum]
 gi|254766036|sp|C3L713|MURD_BACAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|164711949|gb|EDR17489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus anthracis
           str. A0488]
 gi|227002721|gb|ACP12464.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacillus
           anthracis str. CDC 684]
          Length = 450

 Score = 63.7 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C + + +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKDNALYFKAEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 271 DDIVLPGQHNLENILAAMSIAKLLGVSKEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|69244714|ref|ZP_00602978.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257879366|ref|ZP_05659019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257881768|ref|ZP_05661421.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257890192|ref|ZP_05669845.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257893520|ref|ZP_05673173.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|258615774|ref|ZP_05713544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecium DO]
 gi|260558808|ref|ZP_05830997.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|293553185|ref|ZP_06673822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|293560474|ref|ZP_06676966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|293568300|ref|ZP_06679624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|294621603|ref|ZP_06700768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|314937871|ref|ZP_07845187.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|314941362|ref|ZP_07848255.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|314950121|ref|ZP_07853407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
 gi|314951338|ref|ZP_07854392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|314992831|ref|ZP_07858232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|314997991|ref|ZP_07862886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|68196305|gb|EAN10734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium DO]
 gi|257813594|gb|EEV42352.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,230,933]
 gi|257817426|gb|EEV44754.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,502]
 gi|257826552|gb|EEV53178.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,410]
 gi|257829899|gb|EEV56506.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,408]
 gi|260075267|gb|EEW63580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium C68]
 gi|291589012|gb|EFF20836.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1071]
 gi|291598768|gb|EFF29820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium U0317]
 gi|291602595|gb|EFF32810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1039]
 gi|291605622|gb|EFF35064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium E1162]
 gi|313588003|gb|EFR66848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a01]
 gi|313592635|gb|EFR71480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133B]
 gi|313596555|gb|EFR75400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133A]
 gi|313599785|gb|EFR78628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133C]
 gi|313642729|gb|EFS07309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0133a04]
 gi|313643562|gb|EFS08142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecium TX0082]
          Length = 453

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L          RPHIAVIT I  AH+      +E   AK  + + + + 
Sbjct: 164 DKIVMELSSFQLM----GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEK 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLILNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDYSIYYKKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L  FH    R    +         
Sbjct: 271 EISELGVPGKHNVENALAAISVAKLYGISNEAIRETLHFFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G            + SL  
Sbjct: 328 FYNDSKATNILATKMALSGFETSKV-------VLLAGGLDRGNTFDEL------IPSLKG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDVV++    +S   
Sbjct: 375 IKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNRLK 453


>gi|228922665|ref|ZP_04085965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228837094|gb|EEM82435.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 450

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 116/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKILFSTTKEIEDGACIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGTSNEAITVVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +       DGDVV++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAVVKAYVHSKDGDVVLL 422


>gi|322807843|emb|CBZ05418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum H04402 065]
          Length = 458

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 116/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKKEGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNEMENE--ALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G H   N+L    +V+   +       A++      G   R           
Sbjct: 273 DSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVAINFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  + I        +    +M+       +    GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIKSAFEKVISHKKCEMEIVTVNSMEEAVKVADNMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNNL 458


>gi|326391690|ref|ZP_08213215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992268|gb|EGD50735.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 454

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 72/360 (20%), Positives = 112/360 (31%), Gaps = 35/360 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++  A R  SKA I AITG+ GKTTT  +L     +  +          +IG PL  A
Sbjct: 96  LGEVEFAYR-FSKAPIYAITGTNGKTTTTSLLGEMFKNAGRKVY----VAGNIGYPLIYA 150

Query: 155 RMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            M   + DF + E+    L          +P I+ I  I P HL+     E     K  I
Sbjct: 151 VMEATEGDFIVAEISSFQL----ETIKEFKPKISCIINITPDHLNRHKTFESYRDIKGRI 206

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           FE         LN+DD     LK K+                            + S   
Sbjct: 207 FENQRGDEYTVLNFDDPVTWSLKNKAKCRVFPFSRKSSLE--------NGAYVKDGSIYI 258

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    I      N+   L   S+      +A    S     +G   R    
Sbjct: 259 SVNGNAKKIIDIEEIYIPGEHNLENALAASSVAYLSGISANVIASTLKSFKGVEHRIEFV 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   NP +   AI  L        G            G    S   +  
Sbjct: 319 DEINGVKFYNDSKGTNPDASIKAIQALKTPIVLIAG------------GYDKGSEFDEFV 366

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +   +  + L G     ++D   +       + ++ T++        S  +GD V++
Sbjct: 367 KAFN-GKVKKLILIGQTAKKIRDTARKYSYPEDDILFAGTLEEAVKKAYESAKEGDSVLL 425


>gi|255656631|ref|ZP_05402040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           difficile QCD-23m63]
 gi|296449914|ref|ZP_06891678.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296878295|ref|ZP_06902304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
 gi|296261184|gb|EFH08015.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP08]
 gi|296430743|gb|EFH16581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           difficile NAP07]
          Length = 451

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 86/289 (29%), Gaps = 28/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP ++ I  I   HL+    +E+   AK  IF        
Sbjct: 161 LVTELSSFQLESIDEF----RPKVSAILNITEDHLNRHHTMEKYIEAKTNIFMNQTSEDF 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD   + L  K +A      +S  K  N    L       +       L    + 
Sbjct: 217 CVLNYDDEIVKGLADKCNAK--VIYFSRTKKVNGGVYLENNDIIIDIDDKIKFLNKDDVS 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +       +        + I  +   D++     L  F   E R        N      +
Sbjct: 275 LPGGHNLENCM----AAIAIAYVCKIDLEVIKDVLMTFKGVEHRQ---EFVRNLDNVIYV 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   AI              I + G M + G              +   + 
Sbjct: 328 NDSKGTNPDSTIKAIQSYD-------RPIILIAGGMDK-GSNFDELLET-----AKSYVK 374

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G     +++         +H  + M+            GD+V++
Sbjct: 375 SLVLLGETASNIENCAKNKGFNDIHIVKDMEEAVKTSYEISKSGDIVLL 423


>gi|167755735|ref|ZP_02427862.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
 gi|167704674|gb|EDS19253.1| hypothetical protein CLORAM_01250 [Clostridium ramosum DSM 1402]
          Length = 446

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 123/383 (32%), Gaps = 50/383 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLTLAR 155
           +LA     +     I +TG+ GKTTT  ++   L    +     G+       V L    
Sbjct: 99  ELAFQVAKKQHY--IGVTGTNGKTTTVTLIDKILKGQYQHVHLAGNVGTPLCDVVLDNDL 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  +  + + E+    L +I       +P+++ I  + P HL   + ++E  ++K  I++
Sbjct: 157 LNEENHYVVIEMSNFQLLDIERF----KPYVSTIINLTPDHLDYMASLDEYYASKTNIYK 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +      +N DD        K      +   S          + +     ++  +  +
Sbjct: 213 NTDLDDYFVVNLDDKTVMEYLEKYPVPCNQVTMSL---------IHEADCMIKEQAIYYR 263

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +G H  QN++  + I       V    + ++ F   E R         
Sbjct: 264 DELIINLADIKVVGRHNIQNIMTAICIAKKCDVPVTVINREIASFIGVEHRI---EFVRE 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQ--ISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                + ++S   N  +   A+    Q  I   G   +   L +M   G           
Sbjct: 321 INGVKIYNDSKATNTDATIIALKAFEQPVILLMGGFDKGLDLTEMATYG----------- 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS- 452
                  ISH+   G      K+ +    +    E ++   L        GD++++  S 
Sbjct: 370 -----NKISHLVTFGAAGERFKNDM-HVANSSSVENLEAATLLAIEKAKAGDIILLSPST 423

Query: 453 -----------NSCGFYRLINLL 464
                          F  ++N L
Sbjct: 424 SSFDEFSGYEERGRVFKNIVNKL 446


>gi|296110605|ref|YP_003620986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
 gi|295832136|gb|ADG40017.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           kimchii IMSNU 11154]
          Length = 448

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 66/381 (17%), Positives = 126/381 (33%), Gaps = 47/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            TD+V     L+IP+         L ++A  A       +IA+TGS GKTTT  ++   L
Sbjct: 83  QTDIVKKAQKLNIPI---------LTEVA-VALSLFNGRLIAVTGSNGKTTTTSLIRDML 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            S  +      +   +IG P++       D +  + EL    L      T  +RP IA+I
Sbjct: 133 ESDGQQV----TTAGNIGTPVSEVVENLTDEETLLLELSSFQLL----GTPDIRPDIALI 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   HL      +    AK +I +      T+ LN +    +    +++A  ++    
Sbjct: 185 TNIFANHLDYHGSRDNYVEAKFQITKNQTVDQTLVLNAEGKDTQNFITRTNAKVVEFSRK 244

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +                   + +             +G H  +N++    +  +    
Sbjct: 245 SSEFM----------VTVNADSLMIANHPVMPLTAIKLVGPHNLENIVAATTVAKLAGVH 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F     R    +  L+       ++S   +  + + A++   Q       
Sbjct: 295 DSAIRQVLETFGGVAHRL---QFVLSANQIKFYNDSKATDIEATQTALNSFDQ------- 344

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSE 428
                L    + G+           V +L ++  V   G     + + A   +  V    
Sbjct: 345 -PTIWLAGGLDRGDDLTRL------VPNLTHVKVVIAFGETQQKIVEVARAANKPVITVT 397

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GD+V++
Sbjct: 398 DVTQAVPVAVKLAEAGDIVLL 418


>gi|225849192|ref|YP_002729356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643195|gb|ACN98245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 424

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 120/334 (35%), Gaps = 36/334 (10%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           + GVP          D  I EL    L    + T   +P IAVI  I+  HL     ++ 
Sbjct: 113 NYGVP--FIETAGKNDVAILELSSFQL----YSTKTFKPKIAVILNISKDHLDWHKKMKH 166

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              +K +IF+   +   + LNYDD+  + +KAKS                    L+  ++
Sbjct: 167 YILSKFKIFKNQTEEDYLILNYDDNCLKQIKAKSQIYYFSLNQL--PQDKKGIYLKNIEK 224

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E        +   ++V    +G H  QN++ +L +  +   D+D  +K +  F P   
Sbjct: 225 SGEYILTLQDKEKIDIKVKTSLVGLHNLQNIMASLVVSYLYGLDLDKVLKVIQEFKPLSH 284

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R        +    +  ++S      +++ AI              + +LG + + G+ S
Sbjct: 285 RI---EFVSSINGVSFYNDSKATTVQAVEKAIDSFD-------KNVVLILGGINKGGDFS 334

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                 + +      +    + G     +K  +     V  +++++   +   ++   GD
Sbjct: 335 ------VLKDKLKQKVKKAIIIGRDKNQIKSMIEEYTQVELADSLEEAVIKSYNTAEKGD 388

Query: 446 VVVV---KSS---------NSCGFYRLINLLLEE 467
            V++    +S             F  ++  L  +
Sbjct: 389 TVILSPGCASFDMFKSYADRGNQFINIVKNLENQ 422


>gi|89055254|ref|YP_510705.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Jannaschia
           sp. CCS1]
 gi|118595660|sp|Q28NN2|MURD_JANSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|88864803|gb|ABD55680.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Jannaschia sp.
           CCS1]
          Length = 460

 Score = 63.7 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 115/397 (28%), Gaps = 40/397 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAV--AARLRSKATIIAIT 114
              +V +  +  + S               VD D+      L     A   +   ++A+T
Sbjct: 62  VACLVTSPGIPHLYSTPHRAIVAAYAAGVPVDNDIGLFFRSLGQGDWAFHDTPPRVVAVT 121

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   L               +IG  +     P+D +  + EL       
Sbjct: 122 GSNGKSTTSALIAHILEEAGT----PVQLAGNIGRGVLDIEPPIDGEVIVIELSSYQ--- 174

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFF 232
              L   + P IAV T ++  HL    G+     A  +     G E+        +  + 
Sbjct: 175 -TELARALTPDIAVFTNLSADHLERHGGMGGYFAAKRRLFSEGGPERAVIGVDEIEGQYL 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                +    G     S GK     + +   K    +     Q     +  V    G H 
Sbjct: 234 AGQLVEGPEDGRLIRVSSGKLSGPGWDVSTRKGWLSEFRKGRQAASIDLRGVPGLPGAHN 293

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN     G+   L         A + F     R    +          +++S   N  +
Sbjct: 294 HQNAACAYGVCRALGLAPRVIEAAFATFEGLPHRS---QRVAEINGVFYVNDSKATNVDA 350

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A+    +I     G      G +  + E             +  +++  ++ G    
Sbjct: 351 ATKALGAFKRIRWICGGLEKD--GGLEALWE-------------AAGHVAKAYVIGREAE 395

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A    L   I       M        +    GD V++
Sbjct: 396 AFALHLGD-IPKDVCGDMATAVARASADAQPGDTVLL 431


>gi|300768844|ref|ZP_07078738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493577|gb|EFK28751.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 459

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 43/319 (13%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L         + PHIAVIT I   HL      E    AK  I      
Sbjct: 163 ADTMVTELSSFML----CGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTA 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + +N+D   +  L  +S A  +                 K     E   +  + +  
Sbjct: 219 NDYLVINWDSEEWRQLSKQSQATVVPFSR---------QANTKDGAYEEAGKLYFKDEYI 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +        ++ L  F     R    +        
Sbjct: 270 MDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRT---QYVETYQDR 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  S        ++++  G  + + +L    + G   +             
Sbjct: 327 QFYNDSKATNLVS--------TEMALKGFDQPVILLAGGLDRGNTFEKL-----APALKA 373

Query: 400 NISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
           ++  + + G     + DA  L     + +++  +            GD++++    +S  
Sbjct: 374 HVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIMLSPACASWD 433

Query: 453 -------NSCGFYRLINLL 464
                      F + I  L
Sbjct: 434 QYPNFEVRGDRFIKAIEQL 452


>gi|229031544|ref|ZP_04187544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
 gi|228729833|gb|EEL80813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1271]
          Length = 450

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C +++ +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKENALCFKGEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R              + 
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKVY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A++  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALAAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|70726733|ref|YP_253647.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus haemolyticus JCSC1435]
 gi|81174951|sp|Q4L5N4|MURD_STAHJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|68447457|dbj|BAE05041.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Staphylococcus
           haemolyticus JCSC1435]
          Length = 449

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 80/459 (17%), Positives = 147/459 (32%), Gaps = 80/459 (17%)

Query: 48  GPHY---DGHD-----FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-------- 91
           G +    DG D             G  +V    D    +  L      V +         
Sbjct: 32  GANVTVNDGKDLSQDPHAKDLEALGVKIV----DGGHPLSLLDNEPIIVKNPGIPYTVSI 87

Query: 92  --------LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
                   L  L ++ ++  + S+A IIAITG+ GKTTT  ++       + T    G+ 
Sbjct: 88  IQEAYQRHLKILTEVELSYLI-SEAPIIAITGTNGKTTTSSLIGDMFKKSRLTGRLSGNI 146

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
                V   +A+     ++ I EL    L  +       RPHIA+IT I  AHL     +
Sbjct: 147 GY---VASKVAQETSPNEYLITELSSFQLLGVE----QYRPHIAIITNIYSAHLDYHETL 199

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E   +AK +I++   +   +  NY     +    +S  L  KT+Y   + +     ++  
Sbjct: 200 ENYQNAKKQIYKNQTENDYLICNYH----QRHLIESENLKAKTLYFSTQQEVDGIYIKDG 255

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               +   +                G H  +N+L  +    +    +   I +L+ F   
Sbjct: 256 FIVYQGIRIINIDD-------LVLPGEHNLENILAAVLASILAGVPIKAIIDSLTTFSGI 308

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R    +           ++S   N  + + A++   Q      G            G 
Sbjct: 309 DHRL---QYIGTNRTNKYYNDSKATNTLATQFALNSFKQPIVWLCG------------GL 353

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLV 442
              +   +L   +   N+  + + G            +   V  +  ++     +Q  + 
Sbjct: 354 DRGNDFDELIPYMK--NVRVMVVFGQTQEKFAKLGNSQGKLVVKATDIEDAVKKVQDVVE 411

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLEEFP 469
             DVV++    +S               R I       P
Sbjct: 412 PNDVVLLSPACASWDQYKTFEERG---ERFIESFRAHLP 447


>gi|28378801|ref|NP_785693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum WCFS1]
 gi|308180998|ref|YP_003925126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|38258037|sp|Q88V80|MURD_LACPL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28271638|emb|CAD64544.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           plantarum WCFS1]
 gi|308046489|gb|ADN99032.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 459

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 43/319 (13%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L         + PHIAVIT I   HL      E    AK  I      
Sbjct: 163 ADTMVTELSSFML----CGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTA 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + +N+D   +  L  +S A  +                 K     E   +  + +  
Sbjct: 219 NDYLVINWDSEEWRQLSKQSQATVVPFSR---------QANTKDGAYEEAGKLYFKDEYI 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +        ++ L  F     R    +        
Sbjct: 270 MDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRT---QYVETYQDR 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  S        ++++  G  + + +L    + G   +             
Sbjct: 327 QFYNDSKATNLVS--------TEMALKGFDQPVILLAGGLDRGNTFEKL-----APALKA 373

Query: 400 NISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
           ++  + + G     + DA  L     + +++  +            GD++++    +S  
Sbjct: 374 HVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIMLSPACASWD 433

Query: 453 -------NSCGFYRLINLL 464
                      F + I  L
Sbjct: 434 QYPNFEVRGDRFIKAIEQL 452


>gi|302561123|ref|ZP_07313465.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
 gi|302478741|gb|EFL41834.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           griseoflavus Tu4000]
          Length = 470

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 76/417 (18%), Positives = 130/417 (31%), Gaps = 52/417 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  + A+     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT +ML   L
Sbjct: 81  DKPLFAAADRAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +         +   +IGV L  A +  +  D    EL    L         +R H A +
Sbjct: 134 EAAGLR----TAAVGNIGVSLLDAVLGEERYDVLAVELSSYQLHWA----PSLRAHSAAV 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD-DSFFELLKAKSHALGIKTIY 248
             +AP HL     +E  A  K  ++EG         +       E L  ++         
Sbjct: 186 LNLAPDHLDWHGSMEAYARDKGRVYEGNRVACVYNADATGKPSTEDLVREADVEEGCRAV 245

Query: 249 SFGKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            F        QL   +    +++++E + +          +      N+   L   ++  
Sbjct: 246 GFTLGAPGPSQLGVVEGILVDRAFVENRQRNAQELAEVSDVNPPAPHNIANALAAAALAR 305

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A    A               R     +    T ID+S   N  + +A+++    I    
Sbjct: 306 AYGVPASAVRDGLRAFTPDAHRIAHVADVDGVTYIDDSKATNTHAAEASLAAYDSIVWIA 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G       D    G              +   +    L G     +++AL R       
Sbjct: 366 GGLAKGATFDELVGG--------------AAKRLRGAVLIGRDRALIREALARHAPEVPV 411

Query: 428 ETMD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             +D              Q     GD V++    +S             F + +  L
Sbjct: 412 VDLDRTDTGAMLQAVQEAQRLARPGDTVLLAPACASMDMFANYNKRGDAFAQAVREL 468


>gi|210134942|ref|YP_002301381.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
 gi|210132910|gb|ACJ07901.1| UDP-murnac-pentapeptide presynthetase [Helicobacter pylori P12]
          Length = 493

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 127/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEVYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AVI  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVIAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  +I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLESIR----LASLHQGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|331086157|ref|ZP_08335239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406316|gb|EGG85830.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 450

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 105/334 (31%), Gaps = 41/334 (12%)

Query: 146 HIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A + +  D   + E+    L  I        P ++ I  I P HL+    +E
Sbjct: 143 NIGTPYTGASLEMKEDSVTVAEMSSFQLETID----TFHPKVSAILNITPDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E   AK EI +   +     LNY+D        K H   +         +    +  K  
Sbjct: 199 EYIQAKEEITKNQTEEDVCVLNYEDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKII 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +  +  +++   +   H+      A  M    G+      +       ++      
Sbjct: 259 YADGKPEVLCKVEELKLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHR---- 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                      +      ++S   NP +   A+  +++ +    G            G  
Sbjct: 315 -----IEFVTEKEGVAYYNDSKGTNPDAAIKAVEAMNRPTILIGG------------GYD 357

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
             S + +  +      + ++ L G     + +   R    +V  ++T +   +       
Sbjct: 358 KNSSYDEWIDSFGE-KVRYLVLVGATKEKIAETARRKGFDNVILADTFEEAVMESARLAR 416

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
           +GD V++    +S             F  L+N L
Sbjct: 417 EGDAVLLSPACASWGMFKNFEERGDKFKELVNHL 450


>gi|300869645|ref|YP_003784516.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
 gi|300687344|gb|ADK30015.1| hypothetical protein BP951000_0006 [Brachyspira pilosicoli 95/1000]
          Length = 465

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 117/403 (29%), Gaps = 48/403 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D+V      +I V           ++  A  L      I++TG+ GKTTT  ++   +SS
Sbjct: 99  DIVKEAKKRNIKVI---------GEIEFAYNLIPDRNYISVTGTDGKTTTVNLIYSIISS 149

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            KK        N                +  + EL    L  +          I+VI  I
Sbjct: 150 YKKARLLGNVGNTFS----KEVESIEKDEDIVLELSSFQLETVDNFHSH----ISVILNI 201

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           A  HL  +  IE+  +AK  I +       + LNYD+S+      +              
Sbjct: 202 AEDHLDRYKDIEDYFNAKKNITKNQNSNDFLILNYDNSYTNSYYNELIKTKD-----ISF 256

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +        K       S  E                     N+   L  V     D   
Sbjct: 257 NVLTFSTKNKEANLYYNSEDECLYYNGEKIFSIAKRKLLGMHNIENILASVLACIKDNIP 316

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
                   +  +    R            I++S   + +++ +A+              I
Sbjct: 317 IEYIDKAVNNFKSIEHRLEFVKEIDGVRYINDSKATSMSAVMSALKSFD-------KNII 369

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            ++G   +  +          + +    +  + L+G     L   +  S  +   +    
Sbjct: 370 LIMGGRNKGIDFKP------LKSIIEERVKKLILTGEASEDLSSMIDVSNKIII-KDFTE 422

Query: 433 LFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            F + +   V GD V++    +S             F  L+N 
Sbjct: 423 AFDYAKKIAVKGDTVLLSPGCASFDSFKNYEERGKYFKSLVNR 465


>gi|254469048|ref|ZP_05082454.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
 gi|207087858|gb|EDZ65141.1| UDP-N-acetylmuramate--alanine ligase [beta proteobacterium KB13]
          Length = 461

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/405 (15%), Positives = 121/405 (29%), Gaps = 30/405 (7%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + A +VV +T +  +   +      +IP+         +  L+   R +     IAI G+
Sbjct: 63  QKADVVVTSTAIPKNNPEIVAAKNQNIPII----PRAEM--LSELMRFKEG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  +L   ++        +     +         +      G  +  +    E  
Sbjct: 114 HGKTSTTSILATIMNDAGLDPTYVIGGRIN--------SLRQSARLGKSKHMIVEADESD 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P   ++T I   H+  +   EE        F              D       
Sbjct: 166 ASFLHLNPSNVLVTNIDYDHMETYGHDEERLKQTFVDFIHQIPFYNEVFLCIDDKNIKSI 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K  A  I T     K+     ++   K  S      +  + +S  V     G H   N 
Sbjct: 226 QKLIARPIITYGFSKKADYYPDRVVIKKNKSSFRVNSISKKIRSFSVEIDMPGRHYILNT 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + I   L        KAL  F     R   Y           + + Y  +P  +KA 
Sbjct: 286 LGAIAIALSLNIKPQIISKALKKFKGVSRRFDLYEEFKLGEKNIHLIDDYGHHPTEIKAV 345

Query: 357 ISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-- 413
           +  +         +   V         +      + +  +     +  ++ +G   +   
Sbjct: 346 LDSIK--KGFPGKKINLVFQPHRYSRTKDLFEQFVQILAMADRLFLFEIYAAGEQAIKGI 403

Query: 414 -LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              + +       +  + M    L I+  + D ++++V  + S G
Sbjct: 404 NSHELIKNIKKEKYILDDMAKARLLIEDKIKDDEILLVMGAGSVG 448


>gi|293417964|ref|ZP_06660586.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
 gi|291430682|gb|EFF03680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B185]
          Length = 438

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKISGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|226941967|ref|YP_002797041.1| UDP-N-acetylmuramate--L-alanine ligase [Laribacter hongkongensis
           HLHK9]
 gi|254766007|sp|C1D5L5|MURC_LARHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226716894|gb|ACO76032.1| MurC [Laribacter hongkongensis HLHK9]
          Length = 469

 Score = 63.3 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 132/412 (32%), Gaps = 40/412 (9%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T + A    +       IP+            LA   R +     IAI G+ 
Sbjct: 64  GANVVVTSTAVQADNPEVMAARAAGIPIV----PRA--QMLAELMRFKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++  AL         +                    D+ + E   S       
Sbjct: 115 GKTTTTSLVASALGRAGLDPTFVIGGRL---TAAGSNARLGSGDYLVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P +AV+T I   H+  +    E +  A  +  + L   G   L  DD     + 
Sbjct: 167 SFLCLSPVMAVVTNIDADHMDTYGHDFERLKQAFIDFLQRLPFYGRAVLCIDDKHVREIL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                       +      AD       Q       + Q + +   V  +  G H   N 
Sbjct: 227 PFVTRPLTTYGLTPDADVRADNIRPVAGQMLFDVVWQQQGEEQRHPVTLNLPGRHNVLNA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKA 355
           L  + I     AD+      L+ F     R +RY       G    + + Y  +P  M A
Sbjct: 287 LAAIAIGLECGADIGAIAAGLTEFSGVGRRFQRYGDIALPAGGQATVVDDYGHHPVEMAA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSGFHVL 412
            ++      P        VL         ++    D   +   +    ++ V+ +G   +
Sbjct: 347 TLAAARGAFPER----RLVLAFQPHRYTRTRDLFEDFVGVLSTVDALLLAEVYPAGEAPI 402

Query: 413 ALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              D  AL R++ V       + E +  L   +   L DGDVV+   + S G
Sbjct: 403 VAADGRALARAVRVAGKVEPVFVERIADLPATLLDQLQDGDVVLTMGAGSIG 454


>gi|296125387|ref|YP_003632639.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
 gi|296017203|gb|ADG70440.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brachyspira
           murdochii DSM 12563]
          Length = 471

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 127/392 (32%), Gaps = 44/392 (11%)

Query: 64  GAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           G  L++++       D+V       I +           ++  A  L      IA+TG+ 
Sbjct: 85  GITLIIISPGIPHTIDIVKEAKRRGIKII---------GEIEFAYNLLPNRNYIAVTGTD 135

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   +SS KK        N                +  + EL    L  +  
Sbjct: 136 GKTTTVTLIYKIISSYKKARLVGNVGNTFS----KELETIEPDEDIVLELSSFQLETVEK 191

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                   IA I  IA  HL  +  IEE  +AK  I     K   + LNYD+ +  +   
Sbjct: 192 FHAH----IAAILNIAEDHLDRYKDIEEYFNAKKNISINQNKNDFLILNYDNIYTNIWYN 247

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           + +      + +F        +        E  ++  + +          +G H   N+L
Sbjct: 248 ELNNNCKMKLLTFSLKS----KFADIYYNEEDEYIYYENEKLFSIKERKILGKHNVANIL 303

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +        +     ++ F   E R               I++S   +  ++ +A+
Sbjct: 304 AAVLVCLKDNIPAEHIEHVVNNFKGIEHRV---ELVAEINGVKYINDSKATSMNAVMSAL 360

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
                         I ++G   +  + +          L    +  + L G    AL D 
Sbjct: 361 KSFD-------KDIILIMGGRNKNIDFTS------LNNLIESRVKKLILIGEAAEALDDM 407

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +     +   +     F +  +  ++GD V++
Sbjct: 408 IHFENKIII-KDFTDAFNYASAISINGDTVLL 438


>gi|149198597|ref|ZP_01875641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
 gi|149138312|gb|EDM26721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lentisphaera
           araneosa HTCC2155]
          Length = 437

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 126/383 (32%), Gaps = 56/383 (14%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            + +L  AA+   +   +AITG+ GKTT  EM    L ++            +IG+PL  
Sbjct: 95  FMGELDFAAKFMPQTKFLAITGTNGKTTCTEMTQHTLKNLDY----EAVACGNIGLPLAE 150

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             +  +  DF + E+    +  +      ++   A+I  ++  H+  +   ++   +K  
Sbjct: 151 VALRDNQPDFAVVEISSYQIDLLS----SLKFDAAIILNVSEDHMDRYGTFDKYLDSKLM 206

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I +                                    +   AD       + ++    
Sbjct: 207 IRKFCHFLAVQQ-------------------------DVECAQADMVFSIGDEKADLMIG 241

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E   Q +  ++      ++   N+   LG++++L +      K+L           R   
Sbjct: 242 EELFQYRDQKIPLPKFSFYGKHNLENALGVLALLNSQKIDLQKSLLAMSDFTCSEHRLED 301

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    +++S + NPAS+  A+   +      +  +  VL      G   ++  + +
Sbjct: 302 FATYQNVLYVNDSKSTNPASLMVALETFA------DKNKKIVLIA----GGRDKNMDLSV 351

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
              L    +  V+  G     LK         +     +G  L   S   +GDVV++   
Sbjct: 352 VNPLISKYVKEVFSYGECKENLKALWHTLCLTNLCADFEGAVLEAISCAKEGDVVLLSPG 411

Query: 450 KSS---------NSCGFYRLINL 463
            SS             F  L+  
Sbjct: 412 CSSLDLFKSFEERGKKFKSLVQK 434


>gi|89074169|ref|ZP_01160668.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
 gi|89050105|gb|EAR55631.1| UDP-N-acetylmuramate--L-alanine ligase [Photobacterium sp. SKA34]
          Length = 487

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 77/464 (16%), Positives = 154/464 (33%), Gaps = 67/464 (14%)

Query: 10  LLQAI--QGHSIGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQ-KGA 65
           + + +  +G+ I        N ++   R  A   E FF        GH     A   +GA
Sbjct: 38  IAEVLVNEGYRISGS-DIAPNAVTN--RLTAKGAEIFF--------GH----SAENIQGA 82

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +VV +T +      L       IP+     V  A   LA   R R     IAI G+ GK
Sbjct: 83  SVVVASTAISKENPELVAATESRIPI-----VRRA-EMLAELMRYRHG---IAIAGTHGK 133

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  + T   S        +                  +   G     ++   E     
Sbjct: 134 TTTTALTTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGCSRYLIAEADESDASF 185

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++P + V+T I   H+  +    E +     +    L   G   +  DD     L  +
Sbjct: 186 LHLQPMVCVVTNIEADHMDTYGGDFEVLKQTFIDFLHNLPFYGLAVMCIDDPVVRELLPR 245

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   + ++G +++AD ++  + Q   +  +  ++    ++ +  +  G H A N  
Sbjct: 246 VGRP----MITYGFAEDADVRITNYTQTGHQGHFTVLRKDKPALNITLNTPGKHNALNAT 301

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + +    D +  ++AL  F     R              ++ + Y  +P+ +   I
Sbjct: 302 AAIAVATEEGVDDEAIMRALIEFEGTGRRFDHLGEFETGNGNVMLVDDYGHHPSEVDVTI 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------L 406
                 +  G   +  V+         ++  + D A VL    +  +            +
Sbjct: 362 QA----ARAGWADKRLVMIFQPHRYSRTRDLYDDFANVLEQ--VDVLVMLDVYSAGEAPI 415

Query: 407 SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +G    AL   +     +   +    + L   + + + + D+V+
Sbjct: 416 AGADGRALCRTIRSRGKIDPIFVPEAEELPAILANIIHNDDLVL 459


>gi|229157491|ref|ZP_04285568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
 gi|228625941|gb|EEK82691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           ATCC 4342]
          Length = 450

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 117/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQGAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVAVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITTVLKRFTGVKHRL---EYVTTISNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLETIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|15645360|ref|NP_207534.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
 gi|2313862|gb|AAD07786.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           26695]
          Length = 493

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITCLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +        YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHKGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|325662354|ref|ZP_08150963.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471356|gb|EGC74579.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 450

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 104/334 (31%), Gaps = 41/334 (12%)

Query: 146 HIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A + +  D   + E+    L  I        P ++ I  I P HL+    +E
Sbjct: 143 NIGTPYTGASLEMKEDSVTVAEMSSFQLETID----TFHPKVSAILNITPDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK EI +   +     LNY+D        K H   +         +    +  K  
Sbjct: 199 AYIQAKEEITKNQTEEDVCVLNYEDEVLRAFGEKLHTQVLYFSSRRKLERGIYLEDGKII 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +  +  +++   +   H+      A  M    G+      +       ++      
Sbjct: 259 YADGKPEVLCKVEELKLLGTHNYENVMAASAMAAAYGVPLSSIRETIRNFGGVAHR---- 314

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                      +      ++S   NP +   A+  +++ +    G            G  
Sbjct: 315 -----IEFVAEKEGVAYYNDSKGTNPDAAIKAVEAMNRPTILIGG------------GYD 357

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
             S + +  +      + ++ L G     + +   R    +V  ++T +   +       
Sbjct: 358 KNSSYDEWIDSFGE-KVRYLVLVGATKEKIAETARRKGFDNVILADTFEEAVMESARLAR 416

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
           +GD V++    +S             F  L+N L
Sbjct: 417 EGDAVLLSPACASWGMFKNFEERGDKFKELVNHL 450


>gi|229174579|ref|ZP_04302109.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
 gi|228608884|gb|EEK66176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           MM3]
          Length = 450

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLAFEMLKE---GQKHPIIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A S    +    +         +  +   C +++ +  + +     
Sbjct: 220 SVINADDADVMALSAYSKGQKVLFSTT---------KEIEDGACIKENALCFKGEKVVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R              + 
Sbjct: 271 GDIVLPGQHNLENILAAMSIAKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKVY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLVPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|187932076|ref|YP_001892061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|226711911|sp|B2SDR8|MURD_FRATM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187712985|gb|ACD31282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 416

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 70/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                                                +            D         
Sbjct: 187 KQ---------------------------------SKLNLAKFSNDFFVYDVHNGIKYAG 213

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q       +  +  +           N+   + +++IL        +A+      +G 
Sbjct: 214 EYQIIRGAIYRNSTKLLDIVETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 273

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 274 EHRCKIIKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 329 -----MIKSLDKY-VKYVYIYGVDKEYIESYIKGYCKYQLCNNMKQAFELASQKANSNEI 382

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 383 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 415


>gi|323144085|ref|ZP_08078727.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
 gi|322416139|gb|EFY06831.1| UDP-N-acetylmuramate--L-alanine ligase [Succinatimonas hippei YIT
           12066]
          Length = 479

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 72/452 (15%), Positives = 156/452 (34%), Gaps = 65/452 (14%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGA--L 95
           + F         GH      ++ GA +VVV++ +      ++  +     V  V  A  L
Sbjct: 67  DVFI--------GHR--AENIE-GASVVVVSSAIHQGNPEVNAAIEKRIPV--VRRAEML 113

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L            IA+ G+ GKTTT  +++   +        +     +         
Sbjct: 114 GELMRYRYG------IAVAGTHGKTTTTSLISSIFAEAGLDPTFVIGGLLNS---AGTNA 164

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P + V+T I   HL  +     ++     E  
Sbjct: 165 RLGSSRYLIAEADESDASFLH-----LQPMMTVVTNIEADHLETYGGDFSKLEDTFIEFL 219

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G   +  DD     L  +     +    ++G  + +D Q+  ++Q    S   V
Sbjct: 220 HNLPFYGVAVVCNDDPVIRKLMPRIGRAVV----TYGTIEGSDLQVVDYEQKEAGSTFTV 275

Query: 275 -QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +     +++  +  G HMA+N    + +      D D+  +AL  F     R +RY   
Sbjct: 276 LRKNASPLKIELNLPGIHMAKNAAAAIAVAMEEGIDDDSIKRALKNFAGVGRRFQRYGKL 335

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           ++      + + Y  +P+ ++A I  + +  P+       V+         ++  + D  
Sbjct: 336 MSPQGIVSLVDDYGHHPSEVQATIDAVRRGWPNR----RLVMVFQPHRYTRTRDLYEDFI 391

Query: 394 EVLSLYNISHVWLS-----------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSS 440
            VL    +  + L            G     L  ++     +  H++  +  +   +   
Sbjct: 392 RVLQQ--VDELVLLEVYPAGEDPIQGADGRHLCRSIRAKGKLEPHFARDVAEVPEILDHI 449

Query: 441 LVDGDVVVVKSSNSCGFYRLIN---LLLEEFP 469
           + + D+V+     + G   ++    +L + + 
Sbjct: 450 VKENDIVL-----TQGAGNVVQVAGILKDRWK 476


>gi|29828747|ref|NP_823381.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces avermitilis
           MA-4680]
 gi|44888190|sp|Q82L07|MURC_STRAW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29605851|dbj|BAC69916.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           avermitilis MA-4680]
          Length = 464

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 153/423 (36%), Gaps = 47/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L       IPV    D   AL
Sbjct: 49  ALRALGATVHIGH--AAEHLADDATCVVVSSAIRADNPELARAAELGIPVVHRSD---AL 103

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L    R       IA+ G+ GKTTT  ML ++LS++    +     +           
Sbjct: 104 ARLMDGLRP------IAVAGTHGKTTTTSMLAVSLSTLGLAPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  + D  + E   S     ++      P +A++  +   H +N++ ++EI ++     +
Sbjct: 155 LHGEGDIFVAEADESDRSFHKYA-----PDVAIVLNVELDHHANYASMDEIYASFETFVD 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            + + GT+ +  D      L  +  A G+  + ++G+S +AD  +        +S +EV 
Sbjct: 210 RITEGGTLVIAADHEGARELTRRVTASGV-RVVTYGESADADVCVLSVTAQGLKSEVEVL 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L     L         AL+ +   + R +       
Sbjct: 269 LDGTELTFTVSVPGRHYAHNAVAALAAGVALGIPAADLASALAAYTGVKRRLQ----LKG 324

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ + 
Sbjct: 325 EEAGVQVIDSYAHHPTEMTADLEAM----RAAAGDARILVVFQPHLFSRTQELGKEMGQA 380

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + +A       V        +   I      GD
Sbjct: 381 LALADASVVLDIYPAREDPIPGITSELIIEAARAAGADVTPVHDKAEVPSVIAGMARPGD 440

Query: 446 VVV 448
           +V+
Sbjct: 441 LVL 443


>gi|261405664|ref|YP_003241905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
 gi|261282127|gb|ACX64098.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           Y412MC10]
          Length = 477

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 120/396 (30%), Gaps = 30/396 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++V    +            ++  +    ++A       +A +I ITGS GKTTT   
Sbjct: 73  VALLVKNPGIPYSVPPVQKAIELEIPIVTEVEIA---YRLCEAPMIGITGSNGKTTTTTW 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +   L +   +         +IG PL+ A     + D+ + EL    L          RP
Sbjct: 130 VGKLLENAGLS----PIVAGNIGTPLSEAAATATEHDWMVVELSSFQLKGTE----AFRP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I+ +  +   HL    G+++  ++KA++F       T  LN+DD     L     A  +
Sbjct: 182 RISCLLNVTETHLDYHGGMDDYVASKAKLFANQTSEDTAVLNWDDPVCRNLVPYIKAHIV 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHGIGYHMAQNMLMTLGI 302
               S    +             +        +    +     H I       +     +
Sbjct: 242 PFSMSESLREGVHITPPYAPGAQDSDEDCQGRRIIYTDGEGFTHEIIRVENIGLPGRFNV 301

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            + + A        ++     E     +R   ++  F    +  +    S          
Sbjct: 302 GNAMAACAIAIAAGVAPDK-LEEALSSFRGVEHRLEFVAELQGVSYYNNSKATNSKATHM 360

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                +   + + G     G    S + +L   +    +  V L G     + +A  ++ 
Sbjct: 361 ALTSFKEPVVLIAG-----GLDRGSDYEELIPSMQGR-VKAVVLLGETREKIANAAAKAG 414

Query: 422 -IHVHYSETMDGL-------FLFIQSSLVDGDVVVV 449
              +   +  +                   GD+V++
Sbjct: 415 LKDIILVDNGEDAASTLTSAVRKAAGLAESGDIVLL 450


>gi|269127135|ref|YP_003300505.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
 gi|268312093|gb|ACY98467.1| UDP-N-acetylmuramate/alanine ligase [Thermomonospora curvata DSM
           43183]
          Length = 471

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 143/398 (35%), Gaps = 41/398 (10%)

Query: 68  VVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VVV+T +  S   L         V     AL  L    R       +A+ G+ GKTTT  
Sbjct: 79  VVVSTAIRESNPELRAARERGLRVLHRSEALAALMAGRRA------VAVAGTHGKTTTTS 132

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           MLT+ L       A          V   L       D  + E   S    +R+      P
Sbjct: 133 MLTVVLQHAGLDPAYCIGGQL---VTTGLGADDGTGDVFVAEADESDGSFLRYS-----P 184

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           HIAV+T +   HL N+   E++    A   E +E  G +  + DD     L   +   G+
Sbjct: 185 HIAVVTNVEADHLDNYGAFEKVKENFARFVERIEPGGALVASADDPVAGELAGAARERGL 244

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+ ++G+S  AD +L  +      S   ++      E+     G H A N    L +  
Sbjct: 245 -TVVTYGESAGADLRLTGFTPRGLGSRFAIEG---LGELTLEVPGRHYAHNATAALAVAR 300

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI- 363
           +L  D  T    L+ F     R +R   A        + +SY  +P  + A +    +  
Sbjct: 301 LLGCDFATIRDGLASFTGSMRRLERKGEAGG----VQVFDSYAHHPTELTADLQATREYL 356

Query: 364 ----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFH 410
               +    GR +AV      +   ++ F  +    L L +++ V            G  
Sbjct: 357 DQLAAEGRTGRIVAVFQP--HLYSRTRFFATEFGRALGLADVAVVLDVYGAREDPEPGVS 414

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              + DA+P    V Y    + +   +      GD+V+
Sbjct: 415 GRLIADAVPEGTRVEYVPVREQVPQVVAELARPGDLVL 452


>gi|311029926|ref|ZP_07708016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           m3-13]
          Length = 449

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 74/394 (18%), Positives = 129/394 (32%), Gaps = 53/394 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALN-----------KLAVAARLRSKATIIAITGSV 117
           + +  +     +  IP     + L  L            +LA      S+A II ITGS 
Sbjct: 68  IFDQKIDVVFKNPGIPY---HNPLVQLATEKGIPVLTEVELAYQI---SEAPIIGITGSN 121

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L++            N   V + +A+   + D  + EL    L     
Sbjct: 122 GKTTTTTLIDEMLAA---DKKSPLIAGNIGNVSVEVAQQATEKDIMVTELSSFQLMGTD- 177

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              + RP I+V   +  AHL     ++E   AKA+IF    K     +N DD+    L  
Sbjct: 178 ---IFRPKISVFLNLFEAHLDYHGTLDEYGKAKAKIFFNQTKEDYAVVNADDAQVMKLSE 234

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                   TI  F  +K  D    K            + +           G H  +N+L
Sbjct: 235 ----GIQPTIVPFSTNKTVDGAYLKDNYVC------FKDEKIISIDQIVLPGKHNLENIL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  V +     +  I+ L+ F   + R    +    +      ++S   N  + + A+
Sbjct: 285 AAVAAVKLSGVSNEAIIEVLTRFSGVKHRL---QFIGERDGRRFYNDSKATNILATQKAL 341

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           S          G            G    +   DL   +   N+  +   G     L   
Sbjct: 342 SAFENNVVLLAG------------GLDRGNEFDDLLPYM--SNVKVLVTFGETAEKLMRT 387

Query: 418 LPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    + + + ++            GDV+++
Sbjct: 388 ASEAGIKQIKHVDNVEKAVPVAYEMSEGGDVILL 421


>gi|229162848|ref|ZP_04290805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
 gi|228620730|gb|EEK77599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           R309803]
          Length = 450

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 112/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----SFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N      +++    +  G K ++S  K       ++      +   +          
Sbjct: 220 SVINA--DDADVMALSVNTKGQKVLFSTTKEIEDGAYIKDNALYFKGEKVVEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSIAKLLGVSNEAITVVLKRFTGVKHRL---EYVTTLNNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFAQPIVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T++       +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAGKAGLDIIESVDTLEEAVGKAYAHSSDGDVILL 422


>gi|301026104|ref|ZP_07189579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
 gi|300395675|gb|EFJ79213.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 69-1]
          Length = 438

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|134294642|ref|YP_001118377.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
 gi|134137799|gb|ABO53542.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia vietnamiensis G4]
          Length = 512

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 69/477 (14%), Positives = 148/477 (31%), Gaps = 45/477 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLQAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ +       +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVAFAV-PGLDQLAGEIASGWYGDPSDALLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMP--VDVDFGIFELG 168
            + +  AL+++ +                + +       P     +    D       + 
Sbjct: 125 TQWIAAALTALHQPCALIGTLGSGMPGQLVPTGFTTPDAPQLQRSLARLRDAGAKAVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-- 226
           +S     +   +     IAV T +   HL      +   +AKA++F        +     
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFTWRGLRAAVVNRDD 244

Query: 227 -YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E L  +   +      +     + +      +  +  +   ++      +V  
Sbjct: 245 AAGRRLLEKLAGRVRTIAYGIGDAPSAGADRELVATDVRATAAGTAFRLRSSWGEADVEV 304

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG +       D A+  ++      GR +R           ++ + 
Sbjct: 305 GTLGTFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRPQNDEPLVVID- 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P ++   +  L  I+    GR + + G     G    +    L   ++      V 
Sbjct: 364 YAHTPDALDKTLEALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLADEVV 419

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +         +   +         E      L         DVV++  K 
Sbjct: 420 VTSDNPRSEDPQRIIDQIVAGMTAPDRARRIEDRASAILQAVRGAAREDVVLLAGKG 476


>gi|89095258|ref|ZP_01168179.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
 gi|89080465|gb|EAR59716.1| UDP-N-acetylmuramate--alanine ligase [Oceanospirillum sp. MED92]
          Length = 482

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 133/391 (34%), Gaps = 37/391 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +     IP+     V  A   LA   R R     IA+ G+ GKTTT  +L    
Sbjct: 90  ENPEVKAAREKRIPI-----VRRA-EMLAELMRYRHG---IAVAGTHGKTTTTSLLASIF 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +  +     +     +               + + E   S    +      ++P +A++T
Sbjct: 141 AEGELDPTFVIGGRLNS---AGTNAKMGTSRYLVAEADESDASFLH-----LQPMVAIVT 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  +   E   S   + F         +        + +  +      + + ++
Sbjct: 193 NIDADHMETY---ENDFSRLKKTFVEFLHNLPFYGLAVMCVDDPVVCEILPEISRPVLTY 249

Query: 251 GKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           G S++AD++    +Q     +  ++       ++V  +  G+H   N L T+ + S    
Sbjct: 250 GVSEDADYRAENIRQEGMCTRFTVKRPEGFADLDVSLNMPGHHNMLNALATIAVASDEGI 309

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +    AL  F     R +            ++ + Y  +P  + A +  + +  P   
Sbjct: 310 SDEAICSALEKFEGVGRRFQVLGDVSVTDGTAMLVDDYGHHPREVNAVVKAIREGWPEK- 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALP 419
                V+         ++  + D  EVLS  ++  +          ++G    +L  ++ 
Sbjct: 369 ---RLVMIYQPHRYSRTRDLYEDFVEVLSEVDVLLLLEVYAAGEEPVAGADSRSLCRSIR 425

Query: 420 RSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +   +   +    D +   ++  L  GD+++
Sbjct: 426 QRGRLDPVFVSDKDSVADVLKDILQPGDLLL 456


>gi|170755247|ref|YP_001783157.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B1 str. Okra]
 gi|226711900|sp|B1IGJ0|MURD_CLOBK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169120459|gb|ACA44295.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum B1 str. Okra]
          Length = 458

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A +  ITGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYEMLKREGYRTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+     
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVWAKKNIFKYQSSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     +  ++ ALG    +S  +       L   K   +        +   
Sbjct: 222 NLLVLNKDDDLTNGM--ENEALGDVLKFSLVEKVYNGACLSNNKLTIQG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                +  G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDINLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRI--AVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S  ++P+   A ++   +      G          + E G                
Sbjct: 329 YYNDSIASSPSRTLAGLNSFEKPVILIAGGYDKKIPFEPLAEGGYD-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     ++ A  + I        +    +M+            GD++ +  
Sbjct: 375 -KIKILILMGDTKNKIRSAFEKVISYKKCEMEIVIVNSMEEAVKVADDMAEKGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMYPNFEIRGNEFKNIVNSL 458


>gi|300871753|ref|YP_003786626.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
 gi|300689454|gb|ADK32125.1| UDP-N-acetylmuramate alanine ligase [Brachyspira pilosicoli
           95/1000]
          Length = 460

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 76/393 (19%), Positives = 140/393 (35%), Gaps = 34/393 (8%)

Query: 66  GLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             VV ++        I S       V    G +  LA   RL+     IAI+GS GKTTT
Sbjct: 69  TAVVSSSAISPTNEEIISAKKKNIIVI-PRGEM--LAEIMRLKQG---IAISGSHGKTTT 122

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +++  +   K    CI   N+          +  + ++ + E   S           +
Sbjct: 123 TSLISQIMIEAKLNPICIIGGNHFNLKSNAYCNL--NSEYMVCEADES-----DGSFLRL 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  +V+T I   HL  +  +E++  A  +    +   G  FL +++   + L       
Sbjct: 176 SPVFSVVTNIDNDHLDYYGNVEKLRLAFLDFINKVPFYGCSFLCFENDVVKDLAK----S 231

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIGYHMAQNMLMT 299
             K  YS+G S   DF + K    +E+               E     IG H   N L +
Sbjct: 232 VSKKYYSYGFSNEYDFYVDKSSIKTEEFKTYFKAYYKDKFLGEFELPLIGEHNVLNSLAS 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-----NQGFFTLIDESYNANPASMK 354
           + +   L  D DT  KAL  F     R  +          + G      ++  ++  +  
Sbjct: 292 IAVAYHLDIDTDTIKKALKTFEGVGRRLNKLYDKEITLFDDYGHHPTEIKATLSSLRNAY 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
               +++   PH   R   +L D       + +  I          I+ +  SG  +  +
Sbjct: 352 KDRRIIAIFQPHRYSRTQLLLNDFENAFLDADNLIITDIYAAGESPIAGI--SGETICKI 409

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                ++ ++ Y + ++ +   ++    DGD++
Sbjct: 410 V----KNNNIKYIKNIEDILPELEKIKKDGDII 438


>gi|171742536|ref|ZP_02918343.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283456378|ref|YP_003360942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278150|gb|EDT45811.1| hypothetical protein BIFDEN_01649 [Bifidobacterium dentium ATCC
           27678]
 gi|283103012|gb|ADB10118.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 515

 Score = 63.3 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 63/466 (13%), Positives = 124/466 (26%), Gaps = 48/466 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIG 79
                    I+ D+R++         KG  +    +F+    ++G    V   D      
Sbjct: 35  DNADVPFTHITYDTRTVREGTLLVC-KG-RF--RPEFLDGLKERGLVAYVSERDFSD--- 87

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P   V+D   AL+ L+ A     +++ T+I ITG+ GKTTT       L++     
Sbjct: 88  HTEVPGLIVNDARKALSLLSAAFYGMPQNELTVIGITGTKGKTTTAYFTQAILNAYSNGR 147

Query: 138 A--CIGSYNNHIGVPLTLARMPV----DVDFGIFE----------LGMSHLGEIRFLTHL 181
                   N   G     + +      D    + E          + +S         H 
Sbjct: 148 CALFSSVDNCLDGHTYVESELTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVHG 207

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +   +     I+P H+S+      E+    K ++                         +
Sbjct: 208 LTFDVGAFLNISPDHISDIEHPTFEDYLYCKRQLAYHARAFVLNADADHADLIREDAQAA 267

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                        +        +       ++          E      G     N L  
Sbjct: 268 GIPLADFALRTDDAPTNATLTARPSNAEHSAFSIAANGHDLGEFSLSLAGDFNYANALAA 327

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +        D+A           GR             T+    Y  N  S++A I  
Sbjct: 328 VALAHEAGVPFDSAAMHAMESVHVPGR---MELFTGTDGDTVAIVDYAHNYTSVRALIDF 384

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
           + Q     + R   V G     G  +     ++ E         V+ +        + + 
Sbjct: 385 VEQRYGERKPRITLVAGSA---GNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYIDIC 441

Query: 416 DALPRSIHVHYSE-----TMDGLFLFIQSSLVDG---DVVVV--KS 451
           + +   +   + +                        DV+++  K 
Sbjct: 442 NEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILIIGKG 487


>gi|310287126|ref|YP_003938384.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
 gi|309251062|gb|ADO52810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-lysine ligase
           [Bifidobacterium bifidum S17]
          Length = 543

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 128/431 (29%), Gaps = 39/431 (9%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 42  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 97

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
           +G    V +TD  A       P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 98  RGLAAYVADTDFSAE---TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 154

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI----------------GVPLTLARMPVDVDFGI 164
           TT       L++     A + S  ++                      + R   D     
Sbjct: 155 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I         
Sbjct: 215 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSHALVL 274

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGK 279
              +          A +           G+S    +A             ++        
Sbjct: 275 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAADGAD 334

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E      G     N    L I      D+     A     P    G+  +    Q   
Sbjct: 335 LGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDPQSNT 394

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I + Y  N AS+ A +  + +       R   V G     G  +     ++ E  + +
Sbjct: 395 LAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGSA---GNKAYDRRKEIVE-AAQH 449

Query: 400 NISHVWLSGFH 410
            I     +   
Sbjct: 450 RIDSFIFTAED 460


>gi|254557006|ref|YP_003063423.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
 gi|254045933|gb|ACT62726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           plantarum JDM1]
          Length = 459

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 93/319 (29%), Gaps = 43/319 (13%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L         + PHIAVIT I   HL      E    AK  I      
Sbjct: 163 ADTMVTELSSFML----CGIQTLHPHIAVITNIYSTHLDYHGSRENYVKAKMRITMNQTA 218

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + +N+D   +  L  +S A  +                 K     E   +  + +  
Sbjct: 219 NDYLVINWDSEEWRQLSKQSQATVVPFSR---------QANTKDGAYEEAGKLYFKDEYI 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +        ++ L  F     R    +        
Sbjct: 270 MDAADIRIPGDHNVENALAAIAVAKLQAVPTAGIVQVLKTFTGVRHRT---QYVETYQDR 326

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  S        ++++  G  + + +L    + G   +             
Sbjct: 327 QFYNDSKATNLVS--------TEMALKGFDQPVILLAGGLDRGNTFEKL-----APALKA 373

Query: 400 NISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
           ++  + + G     + DA  L     + +++  +            GD++++    +S  
Sbjct: 374 HVKTLIVFGETAEKMADAGRLAGIQDIEFTDNCETAVPIAWQHSQAGDIIMLSPACASWD 433

Query: 453 -------NSCGFYRLINLL 464
                      F + I  L
Sbjct: 434 QYPNFEVRGDRFIKAIEQL 452


>gi|126729249|ref|ZP_01745063.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
 gi|126710239|gb|EBA09291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sagittula stellata
           E-37]
          Length = 466

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 110/364 (30%), Gaps = 30/364 (8%)

Query: 89  DDVLGALNKLAVAA-RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           +D+            R      ++A+TGS GK+TT  ++   L++  ++         +I
Sbjct: 99  NDIGLFFRSFGADFDRFERPPRVVAVTGSNGKSTTSALIHHILTASVRS----SQLAGNI 154

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI- 206
           G  +     P D    + EL          L   + P +AV T ++P HL    G+    
Sbjct: 155 GRGVLDIDPPEDGGVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGLGGYF 210

Query: 207 -ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
            A  +     G ++        +  F     A+  A       +  K     + +   K 
Sbjct: 211 AAKRRLFAEGGPDRCVIGVDEVEGQFLAGQMAEGRADDRVIRVATHKLTGPGWMVFARKG 270

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +     Q+    +  V    G H  QN          L          L  F     
Sbjct: 271 FLSEWRKGRQIASVDLRDVAGLPGAHNHQNACAAWAACRSLGLGPREIEAGLRSFAGLPH 330

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R    +    QG    +++S   N  S   A+    +I     G        M E G  +
Sbjct: 331 RS---QRIAEQGGVIFVNDSKATNVDSALKALLAFDRIRWVCGGL-------MKEGGLAA 380

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                       L +++  ++ G         L   +      TMD            GD
Sbjct: 381 LEP--------GLNHVAKAYVIGREPEGFALQL-GGVEAELCGTMDQAVARAAEDAQPGD 431

Query: 446 VVVV 449
           VV++
Sbjct: 432 VVLL 435


>gi|113971897|ref|YP_735690.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
 gi|122943467|sp|Q0HE84|MURC_SHESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113886581|gb|ABI40633.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-4]
          Length = 488

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 145/420 (34%), Gaps = 38/420 (9%)

Query: 44  FAIKGPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
             + G     GH  D +  A      +VV       +   ++     +  V  A   LA 
Sbjct: 61  LCLLGAKIHIGHGADNVQQAD----VVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAE 115

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R     +AI G+ GKTTT  ++        +    +            L     + 
Sbjct: 116 LMRYRHG---VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGG--------LLNSAGTNA 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G     ++   E       ++P ++V+T I   H+  + G  E   +    F      
Sbjct: 165 RLGTSRYLIAEADESDASFLHLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +        + +  +      + + ++G S +AD Q   ++Q   Q    V+ +GK 
Sbjct: 225 ---YGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADVQALNFQQQGHQCRFTVRRKGKE 281

Query: 281 M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++ +  G H   N L  + + +    D    I+AL+ F     R +           
Sbjct: 282 DLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFATPKGE 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y  +P+ + A I       P        V+         ++  + D  EVLS  
Sbjct: 342 VMLVDDYGHHPSEVAATIKAARAGWPDK----RLVMAYQPHRYTRTRDLYEDFIEVLSQV 397

Query: 400 NIS---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +      V+ +G   +   D  AL RSI +       +  + D L   +   L +GD+++
Sbjct: 398 DCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|170681706|ref|YP_001742210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SMS-3-5]
 gi|218698511|ref|YP_002406140.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI39]
 gi|218703348|ref|YP_002410867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UMN026]
 gi|293403160|ref|ZP_06647257.1| murD [Escherichia coli FVEC1412]
 gi|298378690|ref|ZP_06988574.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300900881|ref|ZP_07119018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300938483|ref|ZP_07153223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331661462|ref|ZP_08362386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331681473|ref|ZP_08382110.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
 gi|170519424|gb|ACB17602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           SMS-3-5]
 gi|218368497|emb|CAR16232.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI39]
 gi|218430445|emb|CAR11311.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           UMN026]
 gi|291430075|gb|EFF03089.1| murD [Escherichia coli FVEC1412]
 gi|298281024|gb|EFI22525.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           FVEC1302]
 gi|300355645|gb|EFJ71515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 198-1]
 gi|300456552|gb|EFK20045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 21-1]
 gi|331061377|gb|EGI33340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA143]
 gi|331081694|gb|EGI52855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H299]
          Length = 438

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|323491031|ref|ZP_08096223.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
 gi|323314695|gb|EGA67767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           brasiliensis LMG 20546]
          Length = 441

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 124/405 (30%), Gaps = 65/405 (16%)

Query: 86  FGVDDVLGALNK------LAVA---------ARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             V +   AL        LA              +    +IAITGS GK+T  +      
Sbjct: 73  LVVANPGIALATPEIQQVLAANIPVVGDIELFAWQVDKPVIAITGSNGKSTVTDWTGQVA 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +             +IGVP           + + EL    L      T  + P  A   
Sbjct: 133 KA----TGLKVGVGGNIGVPALDLLTLDADLY-VLELSSFQL----ETTSSLAPKAAAFL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  + G+E+   AK  IF+  +                          +     
Sbjct: 184 NLTEDHMDRYQGMEDYRQAKLRIFDHAQSCIVN------------AEDKQTYPDQNNKHL 231

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +    D        C    ++ +  +          +G H   N L+ L ++S +  D+
Sbjct: 232 VEFSLTDSTQFSVIDCDGIEYLAMNGKQIIPAAELSLVGRHNVANALVVLALLSQVGVDI 291

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  + AL  ++    R    +   +      +++S   N AS  AA++ L        G 
Sbjct: 292 EKGLDALKSYNGLTHRC---QVVADNRGIKWVNDSKATNVASTMAALAGL-----ELAGT 343

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              ++G M +  + S      LA VL   ++  +   G         +          +M
Sbjct: 344 LYLLVGGMGKGADFS-----QLAPVLDKLDL-QLCCFGEDGDQF---MSLHPSAQRFSSM 394

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
           + +  ++   +  GD+V++    +S             F  L   
Sbjct: 395 EEIIQWLSPKVTAGDMVLLSPACASFDQFSNFMARGDAFTELAKA 439


>gi|289168282|ref|YP_003446551.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
 gi|288907849|emb|CBJ22689.1| MurD D-glutamic acid adding enzyme [Streptococcus mitis B6]
          Length = 450

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 131/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A I+ ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIVGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQTATDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L  K+ A        
Sbjct: 187 TNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELARKTQA-------- 238

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                    Q +      E   +  + +           G H  +N L T+ +  +   D
Sbjct: 239 --TVVPFSTQEKVDGAYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIVVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVDAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|229829365|ref|ZP_04455434.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
 gi|229792528|gb|EEP28642.1| hypothetical protein GCWU000342_01454 [Shuttleworthia satelles DSM
           14600]
          Length = 451

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 26/307 (8%)

Query: 146 HIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T        +   + E+    L  I        P ++ I  I P HL+    +E
Sbjct: 139 NIGTPYTEVAADTKDETRIVAEVSSFQLETIE----TFHPLVSAILNITPDHLNRHHTME 194

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
              + K  I E      T+ LN +D    +L+     L    ++  GK +       + +
Sbjct: 195 NYIACKERITENQTADETVVLNLEDP---ILREFGKTLPNHVVWFSGKRRLKKGYYYREE 251

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             S +     + +          +G H  +N +  + I   +   +D   + L  F   E
Sbjct: 252 DRSIRYCQGQEEEFILSVRELQVVGRHNYENAMAAIAISRAMGVPMDKIKEGLRAFTAVE 311

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R         +      ++S   NP +    I  +   +    G            G  
Sbjct: 312 HRI---EYVCTKRGVRYYNDSKGTNPDAAIKGIEAMDSPTCLIGG------------GYD 356

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
            +S   D  +      +  + L G     +             Y++T++       +   
Sbjct: 357 KKSDFGDWID-AFKGKVKLLVLIGETRAQIAKCCQDHGFNDFVYADTLEEAVKICYTKAK 415

Query: 443 DGDVVVV 449
           +GD V++
Sbjct: 416 EGDEVLL 422


>gi|24375703|ref|NP_719746.1| UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
 gi|38372363|sp|Q8E9P8|MURC_SHEON RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24350637|gb|AAN57190.1|AE015855_1 UDP-N-acetylmuramate--alanine ligase [Shewanella oneidensis MR-1]
          Length = 488

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 78/421 (18%), Positives = 147/421 (34%), Gaps = 40/421 (9%)

Query: 44  FAIKGPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
             + G     GH  D +  A      +VV       +   ++     +  V  A   LA 
Sbjct: 61  LCLLGAKIHIGHGADNVQQAD----VVVVSTAINPQNPEIIAAKELRIPIVRRA-EMLAE 115

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R     +AI G+ GKTTT  ++        +    +            L     + 
Sbjct: 116 LMRYRHG---VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGG--------LLNSAGTNA 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
             G     ++   E       ++P ++V+T I   H+  +    E++ S   +    L  
Sbjct: 165 RLGTSRYLIAEADESDASFLHLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +  DD     +  +      + I ++G   +AD Q   + Q   Q    V+ +GK
Sbjct: 225 YGVAVVCIDDPVVREIMPRI----SRHIVTYGFRDDADVQALNFSQQGHQCRFTVRRKGK 280

Query: 280 SM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +++ +  G H   N L  + + +    D    I+AL+ F     R +          
Sbjct: 281 EDLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFATPKG 340

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ + Y  +P+ + A I       P        V+         ++  + D  EVLS 
Sbjct: 341 EVMLVDDYGHHPSEVAATIKAARAGWPEK----RLVMAYQPHRYTRTRDLYEDFIEVLSQ 396

Query: 399 YNISH---VWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +      V+ +G   +   D  AL RSI +       +  + + L   +   L +GD++
Sbjct: 397 VDCLLLLDVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPEQLAEVLPDVLQEGDLL 456

Query: 448 V 448
           +
Sbjct: 457 L 457


>gi|323964816|gb|EGB60283.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           M863]
 gi|327255066|gb|EGE66669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           STEC_7v]
          Length = 438

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|302537577|ref|ZP_07289919.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
 gi|302446472|gb|EFL18288.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. C]
          Length = 464

 Score = 63.3 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 136/400 (34%), Gaps = 41/400 (10%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VVV++ + A    L       IPV    D   AL  +    R       IA+ G+ G
Sbjct: 70  ATCVVVSSAIRADNPELARAAELGIPVVHRSD---ALASVMDGLRP------IAVAGTHG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML +ALS++    +     +              + D  + E   S        
Sbjct: 121 KTTTTSMLAVALSALGLDPSYAIGGDLD---APGSNAHHGEGDVFVAEADES-----DRS 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            H   P +A+I      H +N++ ++EI  +       +   GT+ + +       +  +
Sbjct: 173 FHKYTPQVAIILNAELDHHANYASMDEIYESFETFVGKIVPGGTLVVAHGQEGAAEIAHR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + ++G+ + AD ++RK       S + V + G+ +       G H A N + 
Sbjct: 233 VSGNPDLIVRTYGEDETADVRIRKITPRGLTSEVAVVMDGREIVFTVSVPGRHYAHNAVA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L    D    AL  +   + R +       +     + +SY  +P  M A + 
Sbjct: 293 ALTAGVALGIPADDLAAALGKYTGVKRRLQ----LKGEAAGVQVIDSYAHHPTEMTADLE 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
            +        G    ++     +   +Q    ++ + L+L + S V            G 
Sbjct: 349 AI----RSAAGDSRILVVFQPHLFSRTQELGKEMGQALALADASVVLDIYPAREDPIPGV 404

Query: 410 HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +  A       V        +   I      GD+V+
Sbjct: 405 TSELIISAARTAGADVAAEHDKTAVADVIAGMAKPGDLVL 444


>gi|168206854|ref|ZP_02632859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
 gi|170661761|gb|EDT14444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens E str. JGS1987]
          Length = 458

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 119/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIYAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K+K  D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTKGEDAYYKDGKLYVHGKEVCKKDNIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|114045897|ref|YP_736447.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
 gi|123326953|sp|Q0HZR5|MURC_SHESR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113887339|gb|ABI41390.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. MR-7]
          Length = 488

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 76/420 (18%), Positives = 144/420 (34%), Gaps = 38/420 (9%)

Query: 44  FAIKGPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
             + G     GH  D +  A      +VV       +   ++     +  V  A   LA 
Sbjct: 61  LCLLGAKIHIGHGADNVQQAD----VVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAE 115

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R     +AI G+ GKTTT  ++        +    +            L     + 
Sbjct: 116 LMRYRHG---VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGG--------LLNSAGTNA 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G     ++   E       ++P ++V+T I   H+  + G  E   +    F      
Sbjct: 165 RLGTSRYLIAEADESDASFLHLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +        + +  +      + + ++G S +AD Q   + Q   Q    V+ +GK 
Sbjct: 225 ---YGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKE 281

Query: 281 M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++ +  G H   N L  + + +    D    I+AL+ F     R +           
Sbjct: 282 DLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFATPKGE 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y  +P+ + A I       P        V+         ++  + D  EVLS  
Sbjct: 342 VMLVDDYGHHPSEVAATIKAARAGWPDK----RLVMAYQPHRYTRTRDLYEDFIEVLSQV 397

Query: 400 NIS---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +      V+ +G   +   D  AL RSI +       +  + D L   +   L +GD+++
Sbjct: 398 DCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|306825643|ref|ZP_07458982.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
 gi|304432004|gb|EFM34981.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sp. oral taxon 071 str. 73H25AP]
          Length = 450

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 134/389 (34%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      E   +AK  I   +     + LN++    + L  K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEAYVAAKWNIQNNMAAADFLVLNFNQDLAKELATKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTKEKVDG------AYLENGQLYFRGEVVMAASEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D     + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQIIKETLSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAEKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVTYVDATDIADATRKAYELATQGDVVLL 421


>gi|294628851|ref|ZP_06707411.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
 gi|292832184|gb|EFF90533.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           e14]
          Length = 473

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 125/428 (29%), Gaps = 57/428 (13%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +  +  + G   +PV+G  DV     +LA   R    A  +A+TG+ 
Sbjct: 73  GAELVVTAPGWKPDKPLFQAAGRAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTN 125

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIR 176
           GKTTT +ML   L +         +   +IGV L  A +     D    EL    L    
Sbjct: 126 GKTTTVQMLAAILKAAGLR----TAAVGNIGVSLLDAVLGEEKYDVLAVELSSYQLHWA- 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +R H A +  +AP HL     +E  A+ K  ++EG        +    +   +  
Sbjct: 181 ---PSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNRVACVYNVADKATEDLVRA 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A          ++ G    +   + +          +     + +  V            
Sbjct: 238 ADVEEGCRAVGFTLGTPGPSQLGVVEGLLVDRAFVADRHKNAQELAEVSDVNPPAPHNIA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                        V  A     +        +      +      +D+S   N  + +A+
Sbjct: 298 NALAAAALARAFGVPAAAVRDGLRSFTPDAHRI-AHVADVDGVAYVDDSKATNTHATEAS 356

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++    I     G            G          AE L         L G     ++D
Sbjct: 357 LASYESIVWIAGG---------LAKGATFDELVAGAAERLRGA-----VLIGADRALIRD 402

Query: 417 ALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
           AL R         +D              +     GD V++    +S             
Sbjct: 403 ALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVLLAPACASMDMFANYNQRGDA 462

Query: 457 FYRLINLL 464
           F   +  L
Sbjct: 463 FAEAVREL 470


>gi|254299315|ref|ZP_04966765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
 gi|157809086|gb|EDO86256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 406e]
          Length = 504

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQASPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|237799288|ref|ZP_04587749.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022144|gb|EGI02201.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 448

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 114/343 (33%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA IIAITGS  K+T   ++     +  K      +   ++G P           + + E
Sbjct: 108 KAPIIAITGSNAKSTVTTLVGDMAKAAGKRV----AVGGNLGTPALDLLSDDIDLY-VME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  ++G+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYTGLPAYHQAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRDLK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    +  + +L  F   E R    +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFEAMLASLREFTGLEHRC---QWLREHDGVDYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   +  + S              +   V L
Sbjct: 327 ATNVGAA---LAAIKGLGSDIDGKLVLIAGGDGKGADFSG------LRAPVTEHCRAVVL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +   L  ++ +   +T+        S    GD V++
Sbjct: 378 LGRDAELIAQVLGDAVPLIRVDTLQAAVERSASLAQGGDAVLL 420


>gi|254246423|ref|ZP_04939744.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
 gi|124871199|gb|EAY62915.1| UDP-N-acetylmuramyl tripeptide synthase [Burkholderia cenocepacia
           PC184]
          Length = 515

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 74/480 (15%), Positives = 146/480 (30%), Gaps = 48/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   F+  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPTAQLHA---DTRSLEAGDVFVAYA---VDGADNRAFMADAVARG 65

Query: 65  AGLVVVNTDMVASIGSL-SIPV-FGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKT 120
           A  V+   + +A      ++PV   V  +     ++A             + +TG+ GKT
Sbjct: 66  AAAVLYQPEGLAHAPDAPAVPVALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKT 125

Query: 121 TTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
           +  + +  AL+++ +                + +       P     +    D       
Sbjct: 126 SCTQWIATALTALHQPCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVA 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      +    A               +N
Sbjct: 186 MEVSSHALHQGRANGTAFDVAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVIN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G +   D          +  +  +   ++       
Sbjct: 245 RDDAAGRRLLEKLAGRVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDAN 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 305 VEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVV 364

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    GR + + G     G    +    L   ++     
Sbjct: 365 ID-YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLAD 419

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +         E      L         DVVV+  K 
Sbjct: 420 EVVVTSDNPRSEDPQHIIDQVVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKG 479


>gi|53726123|ref|YP_104043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|67643581|ref|ZP_00442326.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|121598668|ref|YP_991767.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126449432|ref|YP_001082804.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|251766617|ref|ZP_04819730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
 gi|52429546|gb|AAU50139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 23344]
 gi|121227478|gb|ABM49996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei SAVP1]
 gi|126242302|gb|ABO05395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10247]
 gi|238524952|gb|EEP88382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei GB8 horse 4]
 gi|243065262|gb|EES47448.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei PRL-20]
          Length = 470

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSAQLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 222 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 447 GGVHQKLLDALSA 459


>gi|325496024|gb|EGC93883.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ECD227]
          Length = 438

 Score = 63.0 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HIDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|111221625|ref|YP_712419.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
 gi|111149157|emb|CAJ60840.1| UDP-N-acetylmuramoylalanyl-D-glutamate 2, 6-diaminopimelate ligase
           [Frankia alni ACN14a]
          Length = 476

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/204 (21%), Positives = 77/204 (37%), Gaps = 21/204 (10%)

Query: 26  FVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV-----ASIGS 80
            V G++ DSR +AP + + A+ G H  G DF   A+ +GA  V+ + +       A   +
Sbjct: 1   MVRGVTHDSRRVAPGDLYAALPGAHVHGADFAAAAIARGAVAVLTDAEGARRIAAAGGPA 60

Query: 81  LSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            ++PV    D    L  +A        +   ++ +TG+ GKTTT  +L   L +   T  
Sbjct: 61  AALPVLVSADPRRDLAPVAARIHGDPSAGLRLLGVTGTNGKTTTAFLLDAGLRAAGHTTG 120

Query: 139 CIGSYNNH---------IGVPLTLA---RMPVDVDFGIFELGM--SHLGEIRFLTHLVRP 184
            IG+                P        +   V+ G+    M  S     +     +  
Sbjct: 121 LIGTVETRIAGDRLASAHTTPEASDLQALLATMVERGVDAATMEVSSHALAQHRADALHF 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIAS 208
             A+ T ++  HL     + +   
Sbjct: 181 AGALFTNLSQDHLDFHPTMADYFE 204


>gi|332142426|ref|YP_004428164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552448|gb|AEA99166.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 479

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 118/384 (30%), Gaps = 37/384 (9%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++ ITGS GKTT   ++   L++             ++G P+    +  D D  
Sbjct: 116 DTPAKRVVGITGSNGKTTVTLLVNHLLNA----CGVKSIEAGNVGRPVLE-ALESDADVV 170

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L     L        A +  I+  HL     +E    AK  IF   +     
Sbjct: 171 VMELSSFQLETTSSLVL----EAATVLNISDDHLDRHGTLEHYVDAKHRIFANAKSAVVW 226

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  + L  +  A   K   +       ++ L           M           
Sbjct: 227 RDGEFVAPDDALNVEGQANAQKANQNGLLRSAIEYGLGASDSGFSIVTMLDSKHIAFNGK 286

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVD---TAIKALSVFHPKEGRGKRYRCALNQGFFT 340
               +       M   L I++ L        +  +A+   H  +    R           
Sbjct: 287 PIIALSDIHLAGMHNVLNIMAALGICCKLGVSPDQAVKHLHSFKSAPHRCVEVARVNSVR 346

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID+S   N  +    I+ L  ISP   G+ + + G     G+   +    LA  L+ Y 
Sbjct: 347 YIDDSKATNIGAT---IAALEGISPTIAGKLLLIAG-----GDAKGADISSLAPYLTQY- 397

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +SHV+  G        +     H     TM             GD V++    +S     
Sbjct: 398 VSHVFALGKDAHLFAQSFA---HTTQVATMKEAVKGALRLAAPGDAVLLSPACASIDMFK 454

Query: 453 ----NSCGFYRLINLLLE-EFPAI 471
                   F + ++ LL+ +  A+
Sbjct: 455 NYMHRGEMFKQTVHDLLDIKQEAL 478


>gi|116627601|ref|YP_820220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           thermophilus LMD-9]
 gi|122267801|sp|Q03L98|MURD_STRTD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116100878|gb|ABJ66024.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           thermophilus LMD-9]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 127/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +   +   + D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----HGGKSGVLSGNIGFPASEVAQSVTNQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      EE  +AK  I   +     I 
Sbjct: 166 MELSSFQLMGIE----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNEMTSDDFII 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  +++A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATQTNAQVVP----FSTVEKVDG------AYLENGGLYFKGELLMHADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + LS F   + R    +           ++
Sbjct: 272 LGVPGSHNVENALATIAVAKLSGVSNQAIKETLSSFGGVKHRL---QFVDTIDDVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELIPDI--TGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   +  ++ +             GDVV++    +S        
Sbjct: 376 VILGESAPRVKRAADKTGVTYLDAKDVADATRIAFEQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFITTVERLK 449


>gi|110804152|ref|YP_687672.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 5 str. 8401]
 gi|110613700|gb|ABF02367.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri 5
           str. 8401]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L+ L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|330888575|gb|EGH21236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 448

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 116/343 (33%), Gaps = 30/343 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA  IAITGS  K+T   ++     +  K      +   ++G P     +  DV+  + E
Sbjct: 108 KAPGIAITGSNAKSTVTTLVGEMAVAAGKRV----AVGGNLGTPALDL-LSDDVELYVME 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A +  I+  H+  +SG+     AK  IF G  +      +
Sbjct: 163 LSSFQLETTD----QLNAEVATVLNISEDHMDRYSGLPAYHLAKHRIFRGARQVVVNRQD 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     ++         ++FG +K  DF     ++ + + ++  Q +         
Sbjct: 219 A--------LSRPLIGEGLPCWTFGLNKP-DFHGFGLREENGEKYLAFQFENLMPVRELK 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +    D  + +L  F   E      +           ++S 
Sbjct: 270 VRGAHNQANALAALALGHAVGLPFDAMLASLREFTGLEHPC---QWLREHDGVHYYNDSK 326

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +AE           L
Sbjct: 327 ATNVGAA---LAAIEGLGSDIDGKLVLIAGGDGK-GADFSALRAPVAEHCRAA-----VL 377

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  AL  ++ +   +T+             GD V++
Sbjct: 378 LGRDAELIAQALGDAVTLVRVDTVQAAVEQSARLAQRGDAVLL 420


>gi|333010584|gb|EGK30017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           VA-6]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|293408179|ref|ZP_06652019.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
 gi|291472430|gb|EFF14912.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B354]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|150014970|ref|YP_001307224.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
 gi|189028985|sp|A6LPI8|MURC_CLOB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149901435|gb|ABR32268.1| UDP-N-acetylmuramate--alanine ligase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 459

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/428 (17%), Positives = 145/428 (33%), Gaps = 46/428 (10%)

Query: 48  GPHYDGHDFILHAV-----QKGAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNK--- 97
           G    G DF   A+       GA + + +     +   L +       D+      K   
Sbjct: 34  GYSVSGSDFKDSAIIDKLRSSGAEIYIGHRRENINNVDLVVYTAAIPSDNPELLEAKEKN 93

Query: 98  LAVAARLRSKATI-------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +A+  R      I       +AI+G+ GKTT   ML+    +       +        V 
Sbjct: 94  IALMDRAEFLGQIMKGHKYSVAISGTHGKTTCTSMLSHITLADNLDPTIL--------VG 145

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             L  +  +   G  E  ++   E +       P++ +I  I   HL  +  I+EIA   
Sbjct: 146 GELDAIGGNFRIGNSEYFLTEACEYKRSFLKFPPYVGIILNIDSDHLDYYKDIDEIADTF 205

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ- 269
            +    + + G +    DD     + ++++        S+G S NA+   +     +   
Sbjct: 206 LQFSRLIPEDGYLVGYADDQRVNEILSETN----CNTLSYGFSDNANLTAKNIHFNTNGC 261

Query: 270 -SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            ++   +       +  +  G H   N L ++ +  I     D  I+ LS       R  
Sbjct: 262 ATFDVYKDGNNLFNITLNVPGKHNILNALASICVSLIFNISNDCIIEGLSNCKGAHKRF- 320

Query: 329 RYRCALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                      T+ID+  +         + A             PH   R  A+  +  E
Sbjct: 321 --EYKGKLNGVTVIDDYAHHPTEIKATLSTAKQMNHNKTYCIFQPHTYTRTKALFDEFTE 378

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
               +    I +    +    + +  S     AL++   + I+VH   + D    +++S 
Sbjct: 379 CFNDADEL-ILMDIYAAREKNTGLVSSDELGDALRNKGLKCINVH---SHDEALNYVKSK 434

Query: 441 LVDGDVVV 448
           LV GD+++
Sbjct: 435 LVSGDLLL 442


>gi|16128081|ref|NP_414630.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89106971|ref|AP_000751.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. W3110]
 gi|157159559|ref|YP_001456877.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli HS]
 gi|170021556|ref|YP_001726510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ATCC 8739]
 gi|170079727|ref|YP_001729047.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492751|ref|ZP_03000021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194439413|ref|ZP_03071490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|238899489|ref|YP_002925285.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|253774882|ref|YP_003037713.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037503|ref|ZP_04871580.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|254160210|ref|YP_003043318.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli B str. REL606]
 gi|256025402|ref|ZP_05439267.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           sp. 4_1_40B]
 gi|297519210|ref|ZP_06937596.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli OP50]
 gi|300931785|ref|ZP_07147085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|300949894|ref|ZP_07163857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300955954|ref|ZP_07168287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|301028571|ref|ZP_07191801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|301646400|ref|ZP_07246282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|307136689|ref|ZP_07496045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli H736]
 gi|312970182|ref|ZP_07784364.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|331640541|ref|ZP_08341689.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331650985|ref|ZP_08352013.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|127537|sp|P14900|MURD_ECOLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|40856|emb|CAA38865.1| UDP-MurNac-L-Ala-D-Glu (MurD) (AA 1-438) [Escherichia coli]
 gi|42060|emb|CAA35933.1| unnamed protein product [Escherichia coli]
 gi|1786276|gb|AAC73199.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. MG1655]
 gi|21321969|dbj|BAB96656.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K12 substr. W3110]
 gi|157065239|gb|ABV04494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           HS]
 gi|169756484|gb|ACA79183.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ATCC 8739]
 gi|169887562|gb|ACB01269.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487950|gb|EDU63053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           53638]
 gi|194421672|gb|EDX37682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           101-1]
 gi|226840609|gb|EEH72611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           1_1_43]
 gi|238863752|gb|ACR65750.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BW2952]
 gi|242375924|emb|CAQ30605.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           BL21(DE3)]
 gi|253325926|gb|ACT30528.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972111|gb|ACT37782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli B str. REL606]
 gi|253976320|gb|ACT41990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Escherichia
           coli BL21(DE3)]
 gi|260450705|gb|ACX41127.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           DH1]
 gi|284919868|emb|CBG32923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           042]
 gi|299878382|gb|EFI86593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 196-1]
 gi|300317174|gb|EFJ66958.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 175-1]
 gi|300450726|gb|EFK14346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 116-1]
 gi|300460445|gb|EFK23938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 187-1]
 gi|301075370|gb|EFK90176.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 146-1]
 gi|309700299|emb|CBI99587.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ETEC H10407]
 gi|310337680|gb|EFQ02791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1827-70]
 gi|315134782|dbj|BAJ41941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli DH1]
 gi|315616133|gb|EFU96752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           3431]
 gi|323939872|gb|EGB36072.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E482]
 gi|323960034|gb|EGB55680.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H489]
 gi|331040287|gb|EGI12494.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H736]
 gi|331051439|gb|EGI23488.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M718]
 gi|332341420|gb|AEE54754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Escherichia
           coli UMNK88]
 gi|333011476|gb|EGK30890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-272]
 gi|333021719|gb|EGK40968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-227]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|331671607|ref|ZP_08372405.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
 gi|331071452|gb|EGI42809.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA280]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLYLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|225854210|ref|YP_002735722.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae JJA]
 gi|254766060|sp|C1CD51|MURD_STRZJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722576|gb|ACO18429.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae JJA]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 136/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDLASKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|9257128|pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|13096498|pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 NFEQRGNEFARLAKEL 436


>gi|117922174|ref|YP_871366.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
 gi|166224731|sp|A0L1P1|MURC_SHESA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117614506|gb|ABK49960.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. ANA-3]
          Length = 488

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 143/420 (34%), Gaps = 38/420 (9%)

Query: 44  FAIKGPHYD---GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
             + G       G D +  A      +VV       +   ++     +  V  A   LA 
Sbjct: 61  LCLLGAKIHIGHGADNVQQAD----VVVVSTAINPENPEIIAAKELRIPIVRRA-EMLAE 115

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R R     +AI G+ GKTTT  ++        +    +            L     + 
Sbjct: 116 LMRYRHG---VAIAGTHGKTTTTSLIASLYGQAGRDPTFVIGG--------LLNSAGTNA 164

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
             G     ++   E       ++P ++V+T I   H+  + G  E   +    F      
Sbjct: 165 RLGTSRYLIAEADESDASFLHLQPMVSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPF 224

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
              +        + +  +      + + ++G S +AD Q   + Q   Q    V+ +GK 
Sbjct: 225 ---YGVAVVCIDDAVVREIMPRIGRHMITYGFSDDADVQALNFHQQGHQCRFTVRRKGKE 281

Query: 281 M-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             +++ +  G H   N L  + + +    D    I+AL+ F     R +           
Sbjct: 282 DLDLLLNLPGQHNVLNALAAIAVATEDEIDDSAIIQALAEFQGIGRRFQHLGKFATPKGE 341

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ + Y  +P+ + A I       P        V+         ++  + D  EVLS  
Sbjct: 342 VMLVDDYGHHPSEVAATIKAARAGWPDK----RLVMAYQPHRYTRTRDLYEDFIEVLSQV 397

Query: 400 NIS---HVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +      V+ +G   +   D  AL RSI +       +  + D L   +   L +GD+++
Sbjct: 398 DCLLLLEVYSAGEAPIPGADGRALCRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|303254732|ref|ZP_07340833.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|303259957|ref|ZP_07345931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|303261363|ref|ZP_07347311.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|303264029|ref|ZP_07349950.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
 gi|303266343|ref|ZP_07352233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|303268810|ref|ZP_07354598.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|301801549|emb|CBW34241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV200]
 gi|302598272|gb|EFL65317.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS455]
 gi|302637497|gb|EFL67984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS292]
 gi|302638876|gb|EFL69337.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP-BS293]
 gi|302641675|gb|EFL72034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS458]
 gi|302644154|gb|EFL74411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS457]
 gi|302646434|gb|EFL76660.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae BS397]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDLASKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|313899199|ref|ZP_07832719.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
 gi|312956022|gb|EFR37670.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           HGF2]
          Length = 437

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 123/385 (31%), Gaps = 43/385 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             VV    +       +P     V+  +  L ++ +  R  +K    A+TG+ GKTT   
Sbjct: 64  AFVVKNPGIKYT----VPFVRYFVEHKVKILTEVEIGYRYATKFKYGAVTGTNGKTTITT 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L      Y        +IG PL+   +  + +     L +S+            P
Sbjct: 120 MLYEMLK-----YNHKAIVAGNIGWPLSELALAYEDEEKDVALELSNF--QLLGIEHFAP 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           H++V+  +AP HL     +E    +K  I+E   +      N DD+             I
Sbjct: 173 HVSVVCNLAPDHLDYMPSVESYYESKMRIYENCTEDDWFLRNVDDATVMQYAQHIPCKVI 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +           +      +   + +       E   H +G +   N ++   +  
Sbjct: 233 DFSLT----------RQDVDLYRKDGTVYLHELALFEEKNFHVVGDYNLSNAMIASCMAY 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   V    KA++ F P E R         +      ++S   N  ++ AA++   +  
Sbjct: 283 KLGVSVSDIQKAIAAFSPVEHRL---EYIGEKNGVKFYNDSKATNTHAVAAALNSFDK-- 337

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  I +L    + G   +              +      G      +D       V
Sbjct: 338 ------NIILLAGGHDKGISFEDLKQY------DERVKLCVAFGETGPQFQDIFSC---V 382

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              ETM        ++  + D+V++
Sbjct: 383 QVVETMQEALDAAVANSKEQDIVLL 407


>gi|294787902|ref|ZP_06753146.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
 gi|294484195|gb|EFG31878.1| UDP-N-acetylmuramate--alanine ligase [Simonsiella muelleri ATCC
           29453]
          Length = 470

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/426 (17%), Positives = 142/426 (33%), Gaps = 45/426 (10%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T + A    +       IPV         +  LA   R ++    IAI G+
Sbjct: 63  QGAQVVVTSTAIRADNPEVLAALEQHIPVI----PRAMM--LAELMRFKNG---IAIAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L +       +                    ++ + E   S      
Sbjct: 114 HGKTTTTSLTASVLGAAGLDPTFVIGGKL---TAAGTNAKLGSGNYIVAEADES-----D 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P   V+T I   H+  +   I+++  A  +    +   G  FL  D +    +
Sbjct: 166 ASFLYLSPVFTVVTNIDEDHMDTYDHKIDKLYQAFTDFIHRMPFYGKAFLCVDSAHVRNI 225

Query: 236 ---KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                + +     +  +          +    + +     +   +    +VV +  G H 
Sbjct: 226 LPEIKRPYCTYSISDETADIYATNILAIGSQMKFTAHIRQQKNNEPLVFDVVLNIPGVHN 285

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
             N L ++G+       VD     L+ F     R + Y    L QG   L+ + Y  +P 
Sbjct: 286 VCNALASIGVALECKVPVDAIQAGLAGFSGVGRRFQSYGEMNLPQGGKALVIDDYGHHPV 345

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSG 408
            M A ++      P        VL         ++    D + +LS  +    + V+ +G
Sbjct: 346 EMAATLAAARGAYPDN----RLVLAFQPHRYTRTRDLIDDFSAILSTADFLMLTEVYAAG 401

Query: 409 FHVLALKDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
              +   D             +   + E ++ +   +   L DGDV++   + S    R+
Sbjct: 402 EQPIPHADGRSLARIVRARGKVEPIFCEDVNLIPETLLPFLQDGDVILTMGAGSI--NRV 459

Query: 461 INLLLE 466
              LL+
Sbjct: 460 AQALLD 465


>gi|15616836|ref|NP_240048.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11133470|sp|P57313|MURD_BUCAI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293622|pir||F84955 UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9)
           [imported] - Buchnera sp. (strain APS)
 gi|10038899|dbj|BAB12934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
          Length = 440

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 124/374 (33%), Gaps = 44/374 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II+ITG+ GK+T   M+                   +IGVP+    +  + D
Sbjct: 100 FSREVTCPIISITGTNGKSTVATMIEKIAKKSGY----KAFLGGNIGVPVLEI-LDKEAD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L      T  ++  IAVI  I+  H++ +    +             +  
Sbjct: 155 LYIIELSSFQL----ENTFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAEIC 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + ++        K   SFG +++      K         +  + +    
Sbjct: 211 IINSN------DKIEKSLIHSKNKKWISFGTNRSDYRICSKS----NDPILFFKNKKILN 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  GYH   N+L++L I   +    + AI  L  F        R++   N+     
Sbjct: 261 TSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFS---NLPHRFQIIKNEKGVRW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S + A++ +                    +G  S+S + ++ + +     
Sbjct: 318 INDSKSTNVNSTQVALNSIKTTGTIR-----------LLLGGDSKSANFNILKNIFRTLK 366

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNS--CG 456
             ++  G   + L     +     Y E +    + I   +  GD V++    SS      
Sbjct: 367 IKIYCFGRDGIKLSKICEK--KSIYVENLKKAVILISKQVKSGDTVLLSPGCSSLGQFSN 424

Query: 457 FYR----LINLLLE 466
           F       I L+ E
Sbjct: 425 FEERGNLFIKLIKE 438


>gi|109892713|sp|Q2Y639|MURC_NITMU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 493

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 143/412 (34%), Gaps = 37/412 (8%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VV +T ++     +       +PV         +  LA   RLR     IAI G+ G
Sbjct: 65  ADAVVTSTAILPDNPEVLAARESKVPVV----PRAIM--LAELLRLRQG---IAIAGTHG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++T  L+        +                    +F + E   S    +   
Sbjct: 116 KTTTTSLITSVLAEAGMDPTFVIGGRLE---AAGSHAKLGRGEFIVVEADESDASFLH-- 170

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +            +  + L   G   L  DD+    +  
Sbjct: 171 ---LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLCVDDAHVLEIMP 227

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      S      A        Q    + + V  + + +++V +  G H  QN L
Sbjct: 228 AITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVLNLPGLHNVQNAL 287

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + + +     + ++AL+ F   + R +RY         T  + S+          +
Sbjct: 288 AAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGSFTLIDDYGHHPV 347

Query: 358 SVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
            + + I+           VL         ++    D  +VLS  ++   + V+ +G   +
Sbjct: 348 EMAATIAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPI 407

Query: 413 ALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              D+  L RS+ V       + E +D L   I S   D DVV+V  + S G
Sbjct: 408 IAADSKSLARSLRVLGKVEPIFVERVDELEEAIHSIARDKDVVLVMGAGSVG 459


>gi|91209152|ref|YP_539138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UTI89]
 gi|110640301|ref|YP_668029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 536]
 gi|117622374|ref|YP_851287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|191174589|ref|ZP_03036083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218557028|ref|YP_002389941.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli S88]
 gi|237704237|ref|ZP_04534718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|300984510|ref|ZP_07177002.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|306815314|ref|ZP_07449463.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|331661134|ref|ZP_08362066.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
 gi|118595655|sp|Q0TLQ1|MURD_ECOL5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595656|sp|Q1RGA7|MURD_ECOUT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91070726|gb|ABE05607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           UTI89]
 gi|110341893|gb|ABG68130.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           536]
 gi|115511498|gb|ABI99572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli APEC O1]
 gi|190905136|gb|EDV64781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           F11]
 gi|218363797|emb|CAR01457.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           S88]
 gi|222031919|emb|CAP74657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LF82]
 gi|226902149|gb|EEH88408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia sp.
           3_2_53FAA]
 gi|281177308|dbj|BAI53638.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE15]
 gi|294492798|gb|ADE91554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           IHE3034]
 gi|300306679|gb|EFJ61199.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 200-1]
 gi|305850976|gb|EFM51431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli NC101]
 gi|307629662|gb|ADN73966.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli UM146]
 gi|312944694|gb|ADR25521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O83:H1 str. NRG 857C]
 gi|315285166|gb|EFU44611.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 110-3]
 gi|315300011|gb|EFU59249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 16-3]
 gi|323950916|gb|EGB46793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H252]
 gi|323955286|gb|EGB51059.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H263]
 gi|324012251|gb|EGB81470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 60-1]
 gi|331052176|gb|EGI24215.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA206]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|229198024|ref|ZP_04324738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
 gi|228585503|gb|EEK43607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           m1293]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLTFEMLKE---GQKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     L +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----LFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKNQTENDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A  ++ G K ++S  K       ++      +   +          
Sbjct: 220 SVINADDADVMALSA--YSKGQKVLFSTTKEIEDGACIKDNALYFKGEKVVEVGD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGQHNLENILAAMSISKLLGVSNEAITAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q +    G            G    +   DL       N+ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPTVLLAG------------GLDRGNEFDDLIPYFK--NVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAVVKAYAHSTDGDVILL 422


>gi|307706272|ref|ZP_07643086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
 gi|307618363|gb|EFN97516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK321]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 134/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    S  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALSKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQTATDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +  T  + LN++    + L  K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFEEYVAAKWNIQNKMTATDFLVLNFNQDLAKELATKTQATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVDAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|229817371|ref|ZP_04447653.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
 gi|229785160|gb|EEP21274.1| hypothetical protein BIFANG_02633 [Bifidobacterium angulatum DSM
           20098]
          Length = 513

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 74/488 (15%), Positives = 135/488 (27%), Gaps = 65/488 (13%)

Query: 10  LLQAIQG------HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFIL 58
           L + I G       +           ++ D+R++AP       KG  +     DG +   
Sbjct: 18  LREIINGDSWQLDTAHIDGVDTPFTNLTYDTRTVAPNTLLVC-KG-RFRPEFLDGTE--- 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGS 116
              ++G    V  +D+ +       P   V+D   AL+ LA A         T+I ITG+
Sbjct: 73  ---ERGLAAYVAESDLSSHTTK---PGLIVNDARKALSLLAAAFYDHPERDLTVIGITGT 126

Query: 117 VGKTTTKEMLTIA--LSSIKKTYACIGSYNNHIGV--------------PLTLARMPVDV 160
            GKTTT           S  +        N   G                  + R  VD 
Sbjct: 127 KGKTTTAYFTQSILNTYSAGRCALFSSVDNCLDGHTYAESDLTTPESLDAFRMMRQAVDN 186

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
                 + +S         + +   +A    I+P H+S       E+    K +I     
Sbjct: 187 GMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIIANSR 246

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + L  D    +LL+  + A GI                                + 
Sbjct: 247 ---ALVLGADCDHHDLLREDAKAAGIDVTEFAMGGDAQVVTRLDPNNKEGFIATISDGER 303

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                            +     I     A V  + +A+      +  G+  R       
Sbjct: 304 SVTLEPMALDMTGEFNIVNAAAAIAIAHRAGVPASSQAMHAVQNVQVPGRMERIRGGDNL 363

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +D ++N    S+K+ +  + ++      R   V G     G  +      + +    
Sbjct: 364 LVYVDFAHN--YISVKSLVDEIERVYGERNPRITLVSGT---TGGKAIDRREGIVKGALG 418

Query: 399 YNISHVWLSG----FHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVD-GD--- 445
              S ++            +   +       +         +       +   +  D   
Sbjct: 419 RVESFIFTLDDPNFEDPTDIARQMQSYVTDPAAQTQIVMPREDAVAKAIADAREHNDRFN 478

Query: 446 VVVV--KS 451
           VV+V  K 
Sbjct: 479 VVLVIGKG 486


>gi|323975748|gb|EGB70844.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           TW10509]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|238754433|ref|ZP_04615788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
 gi|238707262|gb|EEP99624.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia ruckeri
           ATCC 29473]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 124/376 (32%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCRENQAPIIAITGSNGKSTVTMLVGEMAKAAGWQV----GVGGNIGVPALTL-LKQENQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H   +  G+++  +AK  I++  +  
Sbjct: 154 LVVLELSSFQL----ETTSSLQATAATILNVTEDHTDRYPFGLQQYRAAKLRIYDNAKIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V  +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVSGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ +     R    +         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAAGIPRSSSLKALTTYAGLAHRF---QLVFENHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L     H +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGL-----HIDGTLHLLLGGDGKSADFS-----GLTRFLQGDK 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  V+  G     L    P    +   +TM+     +  +L  GD+V++    +S     
Sbjct: 365 V-QVYCFGRDGEQLAQLRPEVSQLT--DTMEQAVKLLAPTLKAGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGTEFARLAEEL 437


>gi|224369147|ref|YP_002603311.1| Mpl [Desulfobacterium autotrophicum HRM2]
 gi|223691864|gb|ACN15147.1| Mpl [Desulfobacterium autotrophicum HRM2]
          Length = 472

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 125/387 (32%), Gaps = 39/387 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A+   +     II +TG+ GKTTT  ++   L+               I           
Sbjct: 106 ALNYFVAKDKKIILVTGTHGKTTTSSLMAHVLNQAGLD---PSFMIGGIVTDFNSNYRIG 162

Query: 159 DVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D+ + E                   P   ++T +   H   F  ++ +    A   +G
Sbjct: 163 GGDYIVIEGDEYDTAFFDKGPKFMHYAPCFTIMTGVEFDHADIFRDLDHVRQIFAAFVKG 222

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L          DD   + + A ++    +  +  G+ +  D ++ +        +     
Sbjct: 223 LLPESMTIAWGDDMNLKEILAHANNRIQRYGHGPGEWQCIDLKVEQGTSV----FRIKDP 278

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +GK +      +G H   N L  + +   +   VD   +AL  F   + R    +     
Sbjct: 279 EGKILRFAIPLMGDHNVMNALAVIAVARQINIPVDVLARALVSFSGVKRR----QEVRGV 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                + + +  +P +++  +  +     + +GR IAV          + S    + + +
Sbjct: 335 KRGITVMDDFAHHPTAVRETLRAVRPF--YTQGRIIAVF------EPRTNSSMRKVFQTI 386

Query: 397 ---SLYNISHVWLSGFHV-------------LALKDALPRSIHVHYSETMDGLFLFIQSS 440
              +  +   V +                    + D   R       +  D L  F+   
Sbjct: 387 YPQAFDDADLVCICRPSAMGKIPVEERLSPEKLVADICERGTQALLFDDTDTLVDFLVKM 446

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
            V GD++++  SN  GF  + N LLE 
Sbjct: 447 GVTGDLMLI-MSNG-GFDNIHNRLLER 471


>gi|219870389|ref|YP_002474764.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
 gi|219690593|gb|ACL31816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis SH0165]
          Length = 432

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 117/348 (33%), Gaps = 43/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITGS GK+T   + T                  +IGVP     +  D +
Sbjct: 100 FYREAKAPIIAITGSNGKSTVTTLTTEMAKQAGVKVGMG----GNIGVPALSL-LKGDYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+       
Sbjct: 155 LYVLELSSFQL----ETTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHH----- 205

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                          A++  +  +   +F +      +    K     +       G   
Sbjct: 206 ---------------AENVIVNGEDPQTFPEQAVGSLKKFAEKDAEYTACNGELYSGDEA 250

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +      N++  L  +S+  A        +       G   R++          
Sbjct: 251 VIAIDELKITGRHNVMNALASMSLAEAAGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRW 310

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L       EG    +LG     G+   +   +L   ++  N 
Sbjct: 311 INDSKATNVGSTVAALNGLQV-----EGTLYLLLG-----GDGKDADFSELKPFINQPN- 359

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  G     L      S+     ETM+     I+  L  GD+V++
Sbjct: 360 TVCYCFGKDGAELAALTQNSV---LVETMEQAVAQIRLRLKAGDMVLL 404


>gi|149242346|pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|149242349|pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
           Adp
 gi|149242350|pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
           Containing Sulfonamide Inhibitor
 gi|170785037|pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|170785038|pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261087|pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
 gi|215261088|pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Sulfonamide Inhibitor
          Length = 445

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|124385257|ref|YP_001027261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|254178784|ref|ZP_04885438.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
 gi|254202762|ref|ZP_04909125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|254208104|ref|ZP_04914454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|124293277|gb|ABN02546.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei NCTC 10229]
 gi|147747009|gb|EDK54086.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei FMH]
 gi|147751998|gb|EDK59065.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei JHU]
 gi|160694698|gb|EDP84706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia mallei ATCC 10399]
          Length = 504

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSAQLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|7245651|pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7245652|pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|7546574|pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
 gi|157834055|pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
          Length = 437

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E  +  
Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 NFEQRGNEFARLAKEL 436


>gi|322372684|ref|ZP_08047220.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
 gi|321277726|gb|EFX54795.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. C150]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 72/374 (19%), Positives = 124/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +     V   D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----HGGKSGVLSGNIGFPASEVAQSVTAQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      E   +AK  I   +     I 
Sbjct: 166 MELSSFQLMGID----SFHPHIAVITNLMPTHIDYHGSFEAYVAAKWNIQNRMTSDDFII 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  K+ A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATKTKAQVVP----FSTVEKVDG------AYLENGGLYYKGELIMKADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + L+ F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVSKLSGISNQAIKETLASFGGVKHRL---QFVDTINDVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGVKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   +  ++ +             GDVV++    +S        
Sbjct: 376 IILGESAPRVKRAAEKAGVSYLDAKDVADATRIAFDQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFIATVEQLK 449


>gi|304445552|pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
           Containing Rhodanine Inhibitor
 gi|306991519|pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
           5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of Murd
           Ligase
          Length = 439

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +A   I+E  +  
Sbjct: 153 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAXLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 209 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 257 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 314 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 364 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 NFEQRGNEFARLAKEL 436


>gi|148984107|ref|ZP_01817402.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP3-BS71]
 gi|147923396|gb|EDK74509.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase
           [Streptococcus pneumoniae SP3-BS71]
          Length = 87

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 401 ISHVWLSGFHVLALKDALPRS---IHVHYS------ETMDGLFLFIQSSLVDGDVVVVKS 451
           +  V   G  +  L     +     HV+Y       +  + L   ++ SL   D +++K 
Sbjct: 10  LDTVIFYGEDIAELAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLSANDQILLKG 69

Query: 452 SNSCGFYRLINLLLEEFP 469
           SNS     L+  L  E  
Sbjct: 70  SNSMNLAMLVESLENETK 87


>gi|26246021|ref|NP_752060.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli CFT073]
 gi|218687965|ref|YP_002396177.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli ED1a]
 gi|227885007|ref|ZP_04002812.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300981125|ref|ZP_07175371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|301048480|ref|ZP_07195505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|30316043|sp|Q8FL65|MURD_ECOL6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|26106418|gb|AAN78604.1|AE016755_104 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           CFT073]
 gi|218425529|emb|CAR06312.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           ED1a]
 gi|227837836|gb|EEJ48302.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 83972]
 gi|300299666|gb|EFJ56051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 185-1]
 gi|300409027|gb|EFJ92565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 45-1]
 gi|307551932|gb|ADN44707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           ABU 83972]
 gi|315294717|gb|EFU54060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 153-1]
 gi|324008323|gb|EGB77542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 57-2]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     + + +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLATRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|89893538|ref|YP_517025.1| hypothetical protein DSY0792 [Desulfitobacterium hafniense Y51]
 gi|219666866|ref|YP_002457301.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
 gi|89332986|dbj|BAE82581.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537126|gb|ACL18865.1| UDP-N-acetylmuramate/alanine ligase [Desulfitobacterium hafniense
           DCB-2]
          Length = 435

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 142/397 (35%), Gaps = 39/397 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A +VV +     +   ++        V      L +L    R       IA+ G+ GKTT
Sbjct: 49  ADIVVASAAYGENHEEIARARELNIPVYSYPQFLGRLMSKKRG------IAVAGTHGKTT 102

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTH 180
           T  M+ +AL         +   +    VP           DF + E        + +   
Sbjct: 103 TTAMIGLALLQSGIDPTIVVGSD----VPSIGGNAYSGQGDFFLAESCEYRRHFLNYS-- 156

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P   +IT I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S 
Sbjct: 157 ---PEYLIITNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS- 212

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMT 299
                 I +FG ++ AD      +   E S M +        E   H  G H   N L +
Sbjct: 213 -----PIITFGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALAS 267

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASM 353
           + +   +    +  +++LS F+  + R +            +         S        
Sbjct: 268 IALCLEIGVPTEKVLESLSHFNGTKRRFEHIGQNAGALIVDDYAHHPTEIRSTLEGARLS 327

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVL 412
                + +   PH   R   +L +  +  + +      ++       N++ +        
Sbjct: 328 FPDRRIRAVFQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNLNTI-----SAS 382

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +L D + +  ++  Y  +++ +  ++  +L  GD+V+
Sbjct: 383 SLADLISQQGVNARYIHSLEEIQTYLAQTLSPGDLVL 419


>gi|215485254|ref|YP_002327685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O127:H6 str. E2348/69]
 gi|312966216|ref|ZP_07780442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|215263326|emb|CAS07641.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamateligase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312289459|gb|EFR17353.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           2362-75]
 gi|320197461|gb|EFW72075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           WV_060327]
 gi|323190230|gb|EFZ75506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           RN587/1]
          Length = 438

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVC 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     + + +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLATRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|320546319|ref|ZP_08040638.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
 gi|320449040|gb|EFW89764.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           equinus ATCC 9812]
          Length = 451

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 131/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV+     +IPV           +LA      S A II ITGS GKTTT  M+   L
Sbjct: 85  DNPMVSRAIEKNIPVI-------TEVELAYMI---SDAPIIGITGSNGKTTTTTMIAETL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++        G  + +IG P +   +   D D  + EL    L           PHIAVI
Sbjct: 135 NN----GGQSGLLSGNIGFPASEVAQTATDKDTLVMELSSFQLMGTD----TFHPHIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E    AK  I + +     I LN++    + L  K+ A  +    +
Sbjct: 187 TNLMPTHIDYHGTFENYVVAKWNIQKNMTADDFIVLNFNQDLAKELAEKTAAQVVPFSTT 246

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      +   +  + +           G H  +N L T+ +  +    
Sbjct: 247 ----------EKVDGAYLDGDTLYFKGEAIMKASEIGVPGSHNVENALATIAVAKLSGIA 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NEAIKETLSHFGGVKHR---LQALGEVNGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K A  + ++    ++
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGVKLMVILGESAPRVKRAADKANVPYVDAK 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        S    G+VV++
Sbjct: 401 DVADAARIAYSKAEAGEVVLL 421


>gi|282862160|ref|ZP_06271223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
 gi|282563185|gb|EFB68724.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           ACTE]
          Length = 477

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 126/418 (30%), Gaps = 53/418 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +  +     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT  ML   L 
Sbjct: 89  KPLFQAAAEADVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILE 141

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +         +   +IGV L  A +  +  D    EL    L         +R   A + 
Sbjct: 142 AAGLR----TAAVGNIGVSLLDAVLGEETYDVLAVELSSYQLHWA----PSLRADSAAVL 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +AP HL     ++  A+ K  ++EG         N  D   E L  ++          F
Sbjct: 194 NLAPDHLDWHGSMDAYAADKGRVYEGNRVAC--VYNAQDPATEDLVREADVEEGCRAIGF 251

Query: 251 GKSKNADFQLRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                   QL        +++++  + +          +      N+   L   ++  A 
Sbjct: 252 TLGTPGPSQLGVVDGILVDRAFVANRQKQAQELAQVEDVNPSAPHNIANALAAAALARAF 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                              R     +      ID+S   N  + +A+++    I     G
Sbjct: 312 GVRPSAVRDGLRAFRPDAHRIEHVADVAGVAYIDDSKATNTHAAEASLAAYDPIVWIAGG 371

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                  D    G              +   +  V L G     +++AL R         
Sbjct: 372 LAKGATFDALVTG--------------AAKRLRGVVLMGADRALIREALARHAPEVPVVD 417

Query: 430 MD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           ++        G           GD V++    +S             F   +  L +E
Sbjct: 418 LERTDTGAMSGAVREAARLARPGDTVLLAPACASMDMFVNYNKRGEAFADAVRELADE 475


>gi|149020325|ref|ZP_01835217.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
 gi|147930627|gb|EDK81609.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP23-BS72]
          Length = 450

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 136/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDLASKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|253568794|ref|ZP_04846204.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298387941|ref|ZP_06997490.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
 gi|62900586|sp|Q8A256|MURD_BACTN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251840813|gb|EES68894.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           1_1_6]
 gi|298259348|gb|EFI02223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           1_1_14]
          Length = 444

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 120/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSADLNV----GLAGNIGKSLALQVAEEHHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTTDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +   AK         ++  K   A   +   +       +   +     +   
Sbjct: 213 WNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L     R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 432 DRGDQFKKYVREL 444


>gi|237749171|ref|ZP_04579651.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380533|gb|EEO30624.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 495

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 109/353 (30%), Gaps = 19/353 (5%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGI 164
            K  +IA+TG+ GKTT   +         KT    G+ +   + V L +       D  +
Sbjct: 117 YKPDVIAVTGTNGKTTVTSLTGHMCERAGKTVRLAGNISPAALDVLLDVIEKKQLPDVWV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L    F T+ ++ + A +  +   HL     +E    AKA IF          
Sbjct: 177 LELSSFQL----FTTYTLQANAATVLNLTQDHLDWHGSMEAYGEAKARIFGEKTVRVLNR 232

Query: 225 LNYDDSFFELLKAKSHALGIKTI---YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-- 279
            +          A     G        SFG   + D +        E   +    +    
Sbjct: 233 EDAAVMKMASADAPVVTFGTDEPLEPSSFGLHLDRDMEWLAVMSPVEDGIVRRNKKNDAP 292

Query: 280 --SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G    +        ++ L       +    +                  
Sbjct: 293 LEYAVQNLMPAGALKIRGRHNASNALAALALCRAIHLPFAPLLQALSDYRGEPHRVELIA 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +    ++   ++ A ++ ++ +   G    I + G + +  + S      L+EV++
Sbjct: 353 TVKTVSYIDDSKGTNVGATVAAVNGLGEKGRKNIILIAGGLGKDQDFSP-----LSEVVA 407

Query: 398 LYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            Y +  V L G     + DAL        YS++++           D D V++
Sbjct: 408 QY-VKAVMLIGKDARQIHDALAETGASFVYSDSLEHAVGEAAKMAQDNDTVLL 459


>gi|167895945|ref|ZP_02483347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 7894]
 gi|167920543|ref|ZP_02507634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei BCC215]
          Length = 504

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  + + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSYFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|320011285|gb|ADW06135.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 493

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/418 (17%), Positives = 127/418 (30%), Gaps = 51/418 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +  +     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT  ML   L
Sbjct: 104 DKPLFLAAAEAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASIL 156

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +         +   +IGV L  A +  +  D    EL    L         +R H   +
Sbjct: 157 EAAGLR----TAAVGNIGVSLLDAVLGDETYDVLAVELSSYQLHWA----PSLRAHSGAV 208

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +AP HL     +   A+ K  I+EG             +   + +A          ++
Sbjct: 209 LNLAPDHLDWHGSMAGYAADKGRIYEGNSVACVYNAQDAATEDLVREADVEEGCRAIGFT 268

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G    +   L       +++++  + +          +      N+   L   ++  A 
Sbjct: 269 LGTPGPSQLGLVDGILV-DRAFVADRQKQAQELAEVGDVDPPAPHNIANALAAAALARAF 327

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                              R     +    T ID+S   N  + +A+++    I     G
Sbjct: 328 GVPPAAVRDGLRAFRPDAHRIEHVADVAGVTYIDDSKATNTHAAEASLAAYEPIVWIAGG 387

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                  D    G              +   +  V L G     +K+AL R         
Sbjct: 388 LAKGATFDGLVTG--------------AAKRLRGVVLMGADRALIKEALTRHAPEVPVVD 433

Query: 430 MD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           +D           L        GD V++    +S             F   +  L +E
Sbjct: 434 LDRTDTGAMPAAVLEAARLARPGDTVLLAPACASMDMFVNYNKRGEAFADAVRRLADE 491


>gi|82703608|ref|YP_413174.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
 gi|82411673|gb|ABB75782.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosospira multiformis
           ATCC 25196]
          Length = 522

 Score = 63.0 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/412 (19%), Positives = 143/412 (34%), Gaps = 37/412 (8%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VV +T ++     +       +PV         +  LA   RLR     IAI G+ G
Sbjct: 94  ADAVVTSTAILPDNPEVLAARESKVPVV----PRAIM--LAELLRLRQG---IAIAGTHG 144

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++T  L+        +                    +F + E   S    +   
Sbjct: 145 KTTTTSLITSVLAEAGMDPTFVIGGRLE---AAGSHAKLGRGEFIVVEADESDASFLH-- 199

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +            +  + L   G   L  DD+    +  
Sbjct: 200 ---LQPVLAVVTNIDADHMDTYEHDFGKLKQAFVDFVQHLPFYGMAVLCVDDAHVLEIMP 256

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      S      A        Q    + + V  + + +++V +  G H  QN L
Sbjct: 257 AITKPVTTYGLSETAQVRAADIRHSEGQMHFTALIGVNGKTRKLKIVLNLPGLHNVQNAL 316

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + + +     + ++AL+ F   + R +RY         T  + S+          +
Sbjct: 317 AAIAVCNEVGLPDVSIVRALADFKGVDRRFQRYGEIPLTDPETGRNGSFTLIDDYGHHPV 376

Query: 358 SVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL 412
            + + I+           VL         ++    D  +VLS  ++   + V+ +G   +
Sbjct: 377 EMAATIAAARGAFPGRRLVLAFQPHRYTRTRDLFEDFVKVLSTADVLLLTEVYSAGEAPI 436

Query: 413 ALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              D+  L RS+ V       + E +D L   I S   D DVV+V  + S G
Sbjct: 437 IAADSKSLARSLRVLGKVEPIFVERVDELEEAIHSIARDKDVVLVMGAGSVG 488


>gi|290890680|ref|ZP_06553750.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
 gi|290479655|gb|EFD88309.1| hypothetical protein AWRIB429_1140 [Oenococcus oeni AWRIB429]
          Length = 438

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 125/407 (30%), Gaps = 60/407 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             +++    +L+IPV    +V  AL         + K  ++A+TGS GKTTT  ++   L
Sbjct: 71  EKEIIKKALNLNIPVI--TEVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKML 120

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +             +IG+P++   +        + EL    L         ++P IAVI
Sbjct: 121 KADNVDVKVG----GNIGIPVSELMLSDSQPRVLMLELSSFQLLGA----QNIKPKIAVI 172

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E    AK  I +   K   + LN      +    +          S
Sbjct: 173 TNLFSSHIDFHHTRENYLRAKFSITQHQTKDDYLVLNDSSIDSKDFAKR----------S 222

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                                 +    +          +G H  +N+L  +    I    
Sbjct: 223 QADDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENILAAVTAAKIFGVS 282

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                K L+ F   E R             T+ ++S   +  + + A++   +       
Sbjct: 283 NRAIEKVLTSFKGLEHRL---EAVGVIKERTIYNDSKATDIEATQKALASFKE------- 332

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYS 427
               + G +    +     +  +       N+  +   G     L+ A  ++        
Sbjct: 333 PINLIAGGL----DRGDDLNRLVPNF---KNVVSLITYGQTKNKLQSAGEKAGIKQTVVV 385

Query: 428 ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLIN 462
           +T+       +     G V++     +S             F ++I 
Sbjct: 386 DTLKEAVAKAKELSRPGQVLLFSPAAASWDQFPNFEIRGEEFKKMIK 432


>gi|328881789|emb|CCA55028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           venezuelae ATCC 10712]
          Length = 474

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/389 (17%), Positives = 117/389 (30%), Gaps = 44/389 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +A+TG+ GKTTT  ML   L +         +   +IGV L  A +
Sbjct: 103 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLASILEAAGLR----TAAVGNIGVSLLDAVL 158

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         VR H A +  +AP HL     +E  A+ K  I++
Sbjct: 159 GEETYDVLAVELSSYQLHWA----PSVRVHSAAVLNLAPDHLDWHGSMEAYAADKGRIYQ 214

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           G +      +  D    +L++      G + I     +              +++++  +
Sbjct: 215 GNQVACVYNV-ADKVTEDLVREADVEEGCRAIGFTLGTPGPSELGVVEDLLVDRAFVPDR 273

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +      N+   L   ++  A    A               R      
Sbjct: 274 QKSAQELAEVSDVQPPAPHNIANALAAAALARAFGVEAKAVRDGLKAFRPDPHRIELVEE 333

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +D+S   N  + +A+++    I     G            G          A+ 
Sbjct: 334 VQGVTYVDDSKATNTHAAEASLAAYDPIVWIAGG---------LAKGATFDELVEKSAKR 384

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVV 447
           L         L G     +++AL R         +D                    GD V
Sbjct: 385 LRGA-----VLIGADRALIREALARHAPEVPVVDLDRTDTGAMSEAVREAARLARAGDTV 439

Query: 448 VV---KSS---------NSCGFYRLINLL 464
           ++    +S             F   +  L
Sbjct: 440 LLAPACASMDMFTNYNKRGEAFADAVRAL 468


>gi|306829146|ref|ZP_07462336.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
 gi|304428232|gb|EFM31322.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           mitis ATCC 6249]
          Length = 450

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 137/389 (35%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L  K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELATKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAASEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D  T  + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQTIKETLSAFGGVKHRL---QFVDEIKGIKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKRIVILGQSAERVKRAADKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  ++ +             GDVV++
Sbjct: 393 GVAYVDAKDIADATRKAYELATQGDVVLL 421


>gi|29348859|ref|NP_812362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29340765|gb|AAO78556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 413

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 120/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 70  DAKMICITGSNGKTTTTSLIYHIFKSADLNV----GLAGNIGKSLALQVAEEHHDYYIIE 125

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 126 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTTDDAFIF 181

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +   AK         ++  K   A   +   +       +   +     +   
Sbjct: 182 WNDDPIIKQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 236

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 237 ALTGQHNLYNSLAAGISANLAGITKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 293

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 294 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 341

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L     R  + V   +T M             G+ V++    +S        
Sbjct: 342 L-GLHNEKLHAFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 400

Query: 453 -NSCGFYRLINLL 464
                F + +  L
Sbjct: 401 DRGDQFKKYVREL 413


>gi|315125601|ref|YP_004067604.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
 gi|315014114|gb|ADT67452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           sp. SM9913]
          Length = 444

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 115/341 (33%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TGS GK+T   +    L +     A  G+          L  +  D D  + EL 
Sbjct: 112 PVVAVTGSNGKSTVVTLAYEVLKTAGYKVALGGNIGT-----AVLDLLDGDFDVFVLELS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   R     ++   A +  I+  HL  +   +    +K  I+ G E          
Sbjct: 167 SFQLDTTR----SLKTTSATVLNISEDHLDRYDSYQAYIDSKLSIYNGAEHLVIN----- 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + ++    +  +    SFG+++          Q + ++   V+ +          +
Sbjct: 218 ---VDDIQTHPVSRTLAPQLSFGETQGD----YHLAQHNNEAHFMVKDEAYLPVSTLAVV 270

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + ++S  T        AL+ F+    R    +           ++S   
Sbjct: 271 GKHNYLNTLAVMALLSPFTITKAHYKTALAQFNGLAHRC---QFVGEFNDVKYFNDSKAT 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI  L+     GE + + V+      G  ++   +++ +     ++  +   G
Sbjct: 328 NVGATIAAIDSLA-----GEQQNLVVIA-----GGDAKGADLEVLKPYIEKHVKALICFG 377

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L      S   H +  M       +     GD V++
Sbjct: 378 KDAKDLVAL---SAKGHLTNNMSEAVALAKQLSKSGDTVLL 415


>gi|333027791|ref|ZP_08455855.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
 gi|332747643|gb|EGJ78084.1| putative UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Streptomyces sp. Tu6071]
          Length = 454

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 125/387 (32%), Gaps = 39/387 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             + A+  +  +PV+G  DV     +LA   R    A  +A+TG+ GKTTT  ML   L 
Sbjct: 64  KPLFAAAEAAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 116

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +         +   +IGV L  A +  +  D    EL    L         VRPH A + 
Sbjct: 117 AAGHR----TAAVGNIGVSLLDAVLAEEPYDVLAVELSSYQLHWA----PSVRPHSAAVL 168

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +AP HL     +   A+ K  ++EG +           +   +  A          ++ 
Sbjct: 169 NLAPDHLDWHGSMAAYAADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTL 228

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + ++  + +     +++++  + Q          +      N+   L   ++  A  
Sbjct: 229 GTPRPSELGVVEG-YLVDRAFVPDRAQQAQELAEVADVDPPAPHNVANALAAAALARAFG 287

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A               R          + +D+S   N  + +A+++    I     G 
Sbjct: 288 VPATAVREGLRAFRPDPHRIEHVATIDGVSYVDDSKATNTHAAEASLAAYEPIVWIAGGL 347

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                 D    G              +   +  V L G     +++AL R         +
Sbjct: 348 AKGASFDELVQG--------------AAKRLRAVVLMGRDRALIREALARHAPNVPVVDL 393

Query: 431 D--------GLFLFIQSSLVDGDVVVV 449
           D                    GD V++
Sbjct: 394 DRADTGAMSEAVREAAGLAESGDTVLL 420


>gi|315453896|ref|YP_004074166.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
 gi|315132948|emb|CBY83576.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--ligase [Helicobacter felis ATCC
           49179]
          Length = 486

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 133/344 (38%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              I+AITGS GKT+ K  L   L S    Y+ +GS N  +G+       +P +    I 
Sbjct: 160 NLKILAITGSFGKTSVKNYLYQILQSKHIIYSSLGSTNTLLGLSQDINQNLPENTTLYIA 219

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G    G+I  ++ L+  H AVIT +   H+  F  ++ +   KAE+ E          
Sbjct: 220 EAGARQPGDIAAISQLLNHHYAVITEVGAQHIEYFKTLDNVIKTKAELLE--SSRLEHAF 277

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            + +   E L ++   +                Q+R+ +   E +  E+ L  +      
Sbjct: 278 CHHNEALEELISQKDKI-----------TFYPGQVRRVQATLEGTSFELLLGEQWARFES 326

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G    +N+ + + +       +D   ++++  +P   R +     L+     +ID+ 
Sbjct: 327 KILGAFNVENITLAVMVGFYFGIPIDQLQRSVAKLNPVPHRLQ----VLHLNDKVIIDDG 382

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M  A+     +S    GR+I V   + E  E S +    L + +         
Sbjct: 383 FNGNLKGMLEAVR----LSSLYVGRKIIVTPGLVESDEESNT---TLGKAIDQV-FDIAI 434

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L+G    A    +       + +    L   +QS  +  D+++ 
Sbjct: 435 LTGELNAATLGRVINRAQKIFLKDKSQLEQLLQSVTLAKDLILF 478


>gi|269468117|gb|EEZ79827.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured SUP05
           cluster bacterium]
          Length = 434

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 126/393 (32%), Gaps = 52/393 (13%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           FI   + +   +V+   D        +IPV  V D+     +L        KA +I ITG
Sbjct: 66  FISPGIAQTQSIVIWARD-------KNIPV--VSDI-----ELFSRF---VKAPVIGITG 108

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+T  ++L   +++  K      +   +IG P     +   +D+ + EL    L   
Sbjct: 109 SNGKSTVTQLLGDMITNSDKKV----AVGGNIGKPALDC-LDDQIDYYVLELSSYQLDYT 163

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
               + ++    V+  I P HL  +   ++   +K  ++   +                 
Sbjct: 164 ----NQLKLLTGVVLNITPDHLDRYDSFDDYTDSKLSLYRYCQDLVVN------------ 207

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +           FG              C    ++               IG H   N
Sbjct: 208 LDEVIVPKKNNAKHFGIDMPKRADDFGTVTCHGSCYLIKGDDVVMSVSEMQLIGEHNVAN 267

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           ML  L +   +   V+   +++  F   E R         +      ++S   N  S   
Sbjct: 268 MLAALALGDQIGLSVELMAQSIKNFKGLEHRL---EWVAKKQGVDYYNDSKATNSIS--- 321

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
               +  +    +     VL      G +++     +   L   N+  V L G       
Sbjct: 322 ---TIQALKALIDKHENIVLIA----GGIAKEEDYSVMFKLIDENVFGVVLIGQSAADFG 374

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +L R   V Y++TM          L DG +V+
Sbjct: 375 QSLNR-PQVSYAQTMSEAVNLASGMLNDGVIVL 406


>gi|218547545|ref|YP_002381336.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           fergusonii ATCC 35469]
 gi|218355086|emb|CAQ87693.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia
           fergusonii ATCC 35469]
          Length = 438

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H      L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAH-----YLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|257885178|ref|ZP_05664831.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
 gi|257821030|gb|EEV48164.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,231,501]
          Length = 453

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 108/319 (33%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L          RPHIAVIT I  AH+      +E   AK  + + + + 
Sbjct: 164 DKIVMELSSFQLM----GITDFRPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTEK 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLILNWNQSELQELAQRTKARVLP---------FSTKEVLEGGVYADDYSIYYKKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L++FH    R    +         
Sbjct: 271 EISELGVPGKHNVENALAAISVAKLYGISNEAIRETLNLFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G            + SL  
Sbjct: 328 FYNDSKATNILATKMALSGFETSKV-------VLLAGGLDRGNTFDEL------IPSLKG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDVV++    +S   
Sbjct: 375 IKAMVVFGQTKEKLMDAGKKAGIETIVTADSVEQAVPLALENSTDGDVVLLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNRLK 453


>gi|219681589|ref|YP_002467975.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|219682147|ref|YP_002468531.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|257471275|ref|ZP_05635274.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LSR1 (Acyrthosiphon pisum)]
 gi|254766040|sp|B8D916|MURD_BUCA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766041|sp|B8D7C1|MURD_BUCAT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219621880|gb|ACL30036.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. Tuc7 (Acyrthosiphon pisum)]
 gi|219624432|gb|ACL30587.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Buchnera aphidicola
           str. 5A (Acyrthosiphon pisum)]
 gi|311085959|gb|ADP66041.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. LL01 (Acyrthosiphon pisum)]
 gi|311086534|gb|ADP66615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. TLW03 (Acyrthosiphon pisum)]
 gi|311087114|gb|ADP67194.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF99 (Acyrthosiphon pisum)]
 gi|311087659|gb|ADP67738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Buchnera
           aphidicola str. JF98 (Acyrthosiphon pisum)]
          Length = 440

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 117/348 (33%), Gaps = 35/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II+ITG+ GK+T   M+                   +IGVP+    +  + D
Sbjct: 100 FSREVTCPIISITGTNGKSTVATMIEKIAKKSGY----KAFLGGNIGVPVLEI-LDKEAD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             I EL    L      T  ++  IAVI  I+  H++ +    +             +  
Sbjct: 155 LYIIELSSFQL----ENTFNLKSKIAVILNISEDHINRYPNGFQQYKNTKLSVYNQAEIC 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  N      + ++        K   SFG +++      K         +  + +    
Sbjct: 211 IINSN------DKIEKSLIHSKNKKWISFGTNRSDYRICSKS----NDPILFFKNKKILN 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  GYH   N+L++L I   +    + AI  L  F        R++   N+     
Sbjct: 261 TSEILLYGYHNYNNILVSLAISDAMQFPRNDAINVLKSFS---NLPHRFQIIKNEKGVRW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S + N  S + A++ +                    +G  S+S + ++ + +     
Sbjct: 318 INDSKSTNVNSTQVALNSIKTTGTIR-----------LLLGGDSKSANFNILKNIFRTLK 366

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G   + L     +     Y E +    + I   +  GD V++
Sbjct: 367 IKIYCFGRDGIKLSKICEK--KSIYVENLKKAVILISKQVKSGDTVLL 412


>gi|294501021|ref|YP_003564721.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
 gi|294350958|gb|ADE71287.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           megaterium QM B1551]
          Length = 449

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 109/349 (31%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  I ITGS GKTTT  ++   L              N   V   +A+     + 
Sbjct: 106 YEISEAPFIGITGSNGKTTTTTLIYKMLEE---DQKQPLIAGNIGTVACEVAQKATKDNV 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  I       RP I+++  +  AHL      EE   AKA +F        
Sbjct: 163 IVTELSSFQLMGIEK----FRPKISLLLNLFDAHLDYHGTKEEYIKAKANLFNNQTSEDF 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     +KA +     K  +S          ++      +        +     
Sbjct: 219 AVINADDELV--MKASADVKATKVPFSVTAQTTEGAYIKNETIFFKD-------EEVMSL 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + +V +     +   + L+ F   + R    +           
Sbjct: 270 KDVVLPGKHNQENILAAVSVVKLYGCSNEAIYRVLTTFAGVKHR---VQYVTTINKRKFY 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + K A+S           +   +L    + G        +        N+ 
Sbjct: 327 NDSKATNMLATKVALSAF--------SQPTILLAGGLDRGNEFDDLKEEF------KNVK 372

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   G     ++     +    V   + +        +   + DV+++
Sbjct: 373 AVITFGETAPKIERVAKEAGIQIVKRVDNVKQAVSEAYACSDEEDVILL 421


>gi|163732135|ref|ZP_02139581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
 gi|161394433|gb|EDQ18756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           litoralis Och 149]
          Length = 464

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/366 (17%), Positives = 109/366 (29%), Gaps = 33/366 (9%)

Query: 89  DDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
           +D+       A            ++A+TGS GK+TT  ++   L           +   +
Sbjct: 99  NDIGLFFQSFATEDWSNFDIAPRVVAVTGSNGKSTTSALIHHILE----HVGRPATLAGN 154

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG  +     P D +  + EL          L   + P +AV T ++  HL    G+   
Sbjct: 155 IGRGVLDIDPPHDGEVVVLELSSYQTD----LARSLTPDVAVFTNLSEDHLDRHGGMGGY 210

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +AK  +F        I    +D        L        +  I    K     +Q+   
Sbjct: 211 FAAKRRLFAEGGPDRAIVGVDEDEGLSLAGQLAEGRADDRVIRISVAQKLTGPGWQVFAR 270

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           K    +     Q+    +  V    G H  QN      +   L         AL  F   
Sbjct: 271 KGFLSEYRKGKQIASIDLRSVPGLPGVHNHQNACAAYAVCRSLGLAPKVIEAALHSFQGL 330

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R    +    +     +++S   N  +   A++    I     G      G M  + +
Sbjct: 331 PHRS---QLVGEKDGVRFVNDSKATNADAAAKALAAFPSIRWICGGLEKD--GGMDALRD 385

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S              ++   ++ G    A    LP  +      TM             
Sbjct: 386 AS-------------ASVVKAYVIGREAAAFAMKLP--VEAEICTTMAQAVEKAAREAEA 430

Query: 444 GDVVVV 449
           GDVV++
Sbjct: 431 GDVVLL 436


>gi|92114314|ref|YP_574242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
 gi|118595648|sp|Q1QVG5|MURD_CHRSD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91797404|gb|ABE59543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chromohalobacter
           salexigens DSM 3043]
          Length = 455

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 111/355 (31%), Gaps = 32/355 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
            ++A+  R   ++ I AITGS  K+T   +L               +   ++G P     
Sbjct: 100 GEMALFVRE-CRSPIAAITGSNAKSTVTTLLGEMARESGW----KTAVGGNLGTPALDLL 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
               D +  + EL    L      T  +    A    ++  HL     ++   +AK  IF
Sbjct: 155 DESPDAELFVLELSSFQL----ETTPWLGADTAAFLNLSEDHLDRHGDMQGYRAAKQRIF 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G                 ++ A+  A               D          +      
Sbjct: 211 RGARH-------------AVVNAEDPATWPDAPSCAVTRFTTDMPESGEWGIVDHDGERW 257

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             QG++  +    +      N    L  +++      +      V     G   R    +
Sbjct: 258 LAQGRAAIMPVGQVRMPGRHNHANALAALAMGAHLGLSREAMCRVLERFPGLPHRGEFIV 317

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +     I++S   N  +    ++ ++ I    EGR I + G   +  + S      LAE
Sbjct: 318 EREGVRWINDSKGTNVGAT---LAAIAGIGSDLEGRLILLAGGDGKGADFSP-----LAE 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+ ++     + G     L+ AL   + V     +       ++    GD V++
Sbjct: 370 PLA-HHAREAIVFGRDAERLEQALSARLPVTRVADLAAAMQRARTIARAGDTVLL 423


>gi|134280443|ref|ZP_01767154.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237813866|ref|YP_002898317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
 gi|134248450|gb|EBA48533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 305]
 gi|237503744|gb|ACQ96062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei MSHR346]
          Length = 504

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|332361772|gb|EGJ39576.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis SK1056]
          Length = 459

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 79/382 (20%), Positives = 136/382 (35%), Gaps = 48/382 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + DMV       IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 94  DNDMVVRALEKKIPVI----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIAQVL 143

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +         D  + EL    L  I        P IAVI
Sbjct: 144 TAGGQN----GLLSGNIGFPASQVAQTASSKDTLVMELSSFQLMGIEAFH----PQIAVI 195

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P HL     +EE A+AK  I + +     + LN++  + + + +++ A  +    +
Sbjct: 196 TNLMPTHLDYHGSVEEYAAAKWNIQKNMTADDYLVLNFNQDWAKEMASQTQAAVVPFSTT 255

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                      +      E   +  + +           G H  +N L T+ +  +   D
Sbjct: 256 ----------EKVDGAYLEGDVLTFRGEAIMQAAEIGVPGSHNVENALATIAVAKLRGID 305

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 306 NQTIKEVLSAFGGVKHRL---QYVGRVNEVAFYNDSKSTNILA------TQKALSGFDNS 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           + I + G     G    +   +L   L    +  + + G     +K A  ++  V Y + 
Sbjct: 357 KVILIAG-----GLDRGNEFDELVPDLK--GLKKMVILGQSAPRVKRAADQAG-VSYLDA 408

Query: 430 MD--GLFLFIQSSLVDGDVVVV 449
            D         +    GD+V++
Sbjct: 409 TDVWDAAHKAFAQAEPGDIVLL 430


>gi|126440835|ref|YP_001060472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126455119|ref|YP_001067736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|167825874|ref|ZP_02457345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 9]
 gi|167847357|ref|ZP_02472865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei B7210]
 gi|167912589|ref|ZP_02499680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 112]
 gi|226196829|ref|ZP_03792408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242317055|ref|ZP_04816071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254190965|ref|ZP_04897471.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|254199141|ref|ZP_04905556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|254258821|ref|ZP_04949875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
 gi|126220328|gb|ABN83834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 668]
 gi|126228761|gb|ABN92301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106a]
 gi|157938639|gb|EDO94309.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pasteur 52237]
 gi|169656971|gb|EDS88368.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei S13]
 gi|225931089|gb|EEH27097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei Pakistan 9]
 gi|242140294|gb|EES26696.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1106b]
 gi|254217510|gb|EET06894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710a]
          Length = 504

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|76809096|ref|YP_334867.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
 gi|76578549|gb|ABA48024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1710b]
          Length = 494

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 185

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 186 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 246 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 302

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 303 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 359 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 412

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 413 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 470

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 471 GGVHQKLLDALSA 483


>gi|270263957|ref|ZP_06192225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
 gi|270042150|gb|EFA15246.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia odorifera
           4Rx13]
          Length = 439

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +  +  
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAV----GVGGNIGLPALSL-LRQECQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E     
Sbjct: 154 LYVLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAALC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                  +   SFG    AD       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVR--------GADQRCISFG----ADVGDYHLNRQQGETWLRVRGEKIL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    + A       
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVNIPRASSLKALTTFTGLAHRF---QLAWEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LGRYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L +  P       ++TM+     I   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGEQLAELRPEV--ATLTDTMEQAMQAIAGRVQPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEVRGDEFARLAQEL 437


>gi|194014783|ref|ZP_03053400.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
 gi|194013809|gb|EDW23374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           ATCC 7061]
          Length = 446

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/387 (16%), Positives = 122/387 (31%), Gaps = 42/387 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAA------RLRSKATIIAITGSVGKTTTKE 124
           + D+   I +  IP   V  V  AL +              + +  I ITGS GKTTT  
Sbjct: 66  DKDITILIKNPGIPYENVM-VQEALRRQIPVWTEIELAYHLTSSPFIGITGSNGKTTTTT 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L    +     G+      V   +A      ++ + EL    L      T   RP
Sbjct: 125 LIYEMLKQDSQKTLVAGNIGT---VASEVAANAAGDEWIVTELSSFQLM----GTVEFRP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I  AHL      +E   AK ++F   ++     +N DD     L   S A  +
Sbjct: 178 KISLILNIFDAHLDYHHTRDEYEKAKQKVFAHQQEDDIAVINLDDPSVVKLAEGSKAKKV 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                         +  +     +   +    +           G H  +N+L  + +V 
Sbjct: 238 FFSV---------KEPVEHGAFIQHGAIYYMNEHIIDVKDVVLPGEHNQENILAAICVVK 288

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +   + L+ F   + R    +           ++S   N  +   A+S   Q +
Sbjct: 289 NAGCSNEAITRVLTTFGGVKHRL---QFVDTIQSRKFYNDSKATNILATTKALSAFEQPT 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               G            G    +   +L   +   ++  +   G                
Sbjct: 346 ILLAG------------GLDRGNEFDELKPFMK--HVKGIITFGETAPKFVKLGEELGIH 391

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           HV + + ++       +   + DV+++
Sbjct: 392 HVKHVDNVEQAVPAAFNISEEEDVILL 418


>gi|322376972|ref|ZP_08051465.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
 gi|321282779|gb|EFX59786.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M334]
          Length = 450

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 134/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQTATDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELASKTQATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQKALSGFDNN 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKASVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|198282530|ref|YP_002218851.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667953|ref|YP_002424720.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247051|gb|ACH82644.1| UDP-N-acetylmuramyl-tripeptide synthetase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520166|gb|ACK80752.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 483

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 73/448 (16%), Positives = 129/448 (28%), Gaps = 41/448 (9%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           GI  D+R + P   +  +   H DG  F+  A   GA   ++ +      G    PV+  
Sbjct: 25  GIETDTRRLRPGMLYVGLNTRHGDGQQFLQQAWAAGAAAALLESSDEDVHGGQDHPVWQS 84

Query: 89  DDVLGALN-KLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
                 L   L    R        I+ +TG+ GK++   ++             +G    
Sbjct: 85  PKARTLLGMALRRWYRWDEGLAPVIVGVTGTNGKSSVTRLIAELAPQPAMIIGTLGHGRV 144

Query: 146 H----------IGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                        VP         D    +  + +S           V    AV T ++ 
Sbjct: 145 DALISQANTTPDPVPLWQTMATLRDQGAKVIAMEVSSHALALERVAAVPFAAAVFTNLSR 204

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +     A               LN DD+F   + A       +  +  G   
Sbjct: 205 DHLDFHGDM-ARYGASKTRLFQTPGLRLAVLNGDDAFTGQIAAAMAPEVRQLRFGVGSG- 262

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D+Q       +  + ++++    S  +    IG    QN+L  L     +   V  A 
Sbjct: 263 --DYQAVALHPGASGTLLDLRTPAGSRRIRSPLIGNSNVQNLLAALATAEGMGWPVSDAA 320

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            A       +    RY+          +   Y   P ++     VL+ +    +G    V
Sbjct: 321 IA-----GLDLPEGRYQRLAPVPGKAQVMIDYAHTPDAL---RRVLTDLREVAKGAVTVV 372

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-----ALKD----ALPRSIHVH 425
            G     G             ++     HV L+  +       A+ D     + +     
Sbjct: 373 FG----CGGDRDRGKRPEMGRIAERLADHVILTDDNPRSEAPEAIADDILGGMEQPGQAT 428

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
                        ++   GD V++  K 
Sbjct: 429 VIHDRAAAIRAAIAASRAGDWVLIAGKG 456


>gi|224282666|ref|ZP_03645988.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313139824|ref|ZP_07802017.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
 gi|313132334|gb|EFR49951.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium bifidum NCIMB 41171]
          Length = 519

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/431 (15%), Positives = 128/431 (29%), Gaps = 39/431 (9%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++++A    +  H I        + I+ D+R +         KG  +   +++    +
Sbjct: 18  LREIIRADRWTLDAHDIEGA-DTAFSAITYDTRDVREGTL-LCCKG-RFKA-EYLHDIDE 73

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKT 120
           +G    V +TD  A       P   V+D   A++ L+     R + + T++ ITG+ GKT
Sbjct: 74  RGLAAYVADTDFSAE---TGAPGLIVNDARKAMSLLSAEFYGRPQDELTVVGITGTKGKT 130

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHI----------------GVPLTLARMPVDVDFGI 164
           TT       L++     A + S  ++                      + R   D     
Sbjct: 131 TTAYFTQAVLNAHSHGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNGMKY 190

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGT 222
             + +S         + +   +A    I+P H+S       E+    K +I         
Sbjct: 191 LVMEVSSQAYKVERVYGLTFDVATFLNISPDHISPIEHPTFEDYLYCKRQIVRNSRALVL 250

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSK---NADFQLRKWKQCSEQSWMEVQLQGK 279
              +          A +           G+S    +A             ++        
Sbjct: 251 GAASDHADLLRQDAADAGVPVTTFELLDGQSPAGSDAADVTASPANAEHSAYRIAADGAD 310

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E      G     N    L I      D+     A     P    G+  +    Q   
Sbjct: 311 LGEFRLALDGDFNYANAAAALAIAHAAGIDLTADAAATHAMEPVRIAGRMEQFHDPQSNT 370

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I + Y  N AS+ A +  + +       R   V G     G  +     ++ E  + +
Sbjct: 371 LAIVD-YAHNYASVTALLDFVDERFGSQHPRITLVTGSA---GNKAYDRRKEIVE-AAQH 425

Query: 400 NISHVWLSGFH 410
            I     +   
Sbjct: 426 RIDSFIFTAED 436


>gi|295839430|ref|ZP_06826363.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
 gi|295827475|gb|EFG65417.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces sp.
           SPB74]
          Length = 474

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 110/363 (30%), Gaps = 34/363 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +A+TG+ GKTTT  ML   L +         +   +IGV L  A +
Sbjct: 102 ELAWRLRGPGAAPWLAVTGTNGKTTTVRMLAAILEAAGHR----TAAVGNIGVSLLDAVL 157

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         VRPH A +  +AP HL     +   A+ K  I+E
Sbjct: 158 AEEPYDVLAVELSSYQLHWA----PSVRPHSAAVLNLAPDHLDWHGSMAAYAADKGRIYE 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWMEV 274
           G         N  D   E L   +          F        ++   +    +++++  
Sbjct: 214 G--NQVACVYNAADPATEKLVRAADVEEGCRAIGFTLGTPRPSEVGVVEGLLVDRAFVPD 271

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + +          +      N+   L   ++  A    A               R     
Sbjct: 272 RTEQAQELAELADVNPPAPHNIANALAAAALARAYGVPATAVRDGLRAFRPDPHRIEHVA 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +D+S   N  + +A+++    I     G       D    G            
Sbjct: 332 TIDGVAYVDDSKATNTHATEASLAAYEPIVWIAGGLAKGATFDELVQG------------ 379

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDV 446
             +   +  V L G     + +AL R         +D                   +GD 
Sbjct: 380 --AAKRLRGVVLLGRDRALIAEALARHAPNVPVVDLDRADTGAMSEAVREAAGLAREGDT 437

Query: 447 VVV 449
           V++
Sbjct: 438 VLL 440


>gi|261867478|ref|YP_003255400.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412810|gb|ACX82181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 434

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 120/348 (34%), Gaps = 38/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   I+AITGS GK+T   ++     +             +IG+P     +    D
Sbjct: 98  FCREADKPIVAITGSNGKSTVTTLVAEMAKAAGLRVGMG----GNIGIPALSL-LNQQHD 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H++ +  +++   AK  I+   +   
Sbjct: 153 LYVLELSSFQL----ETTYSLKAVAATVLNVTEDHMNRYVDLQDYRHAKLNIYNHCQTAV 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +                  +   SFG+    +      K  + ++++    +    
Sbjct: 209 INAEDA--------LTLPTTQRPQKQVSFGE----NHADYWLKTENNKTYLMAYDEAVLA 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +      ++     AL  F   E R +    A        
Sbjct: 257 CDEMKLTGRHNYMNALAAIALAQAAGINLTGIRTALCAFGGLEHRFQVAHIADGV---RW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L        G+   +LG   +  + S     +LA +++  +I
Sbjct: 314 INDSKATNVGSTVAALTGLQV-----AGKLHLLLGGDGKGADFS-----ELARLINQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +  G     L     +S      +TM+     I+  L  GD+V++
Sbjct: 364 -YCYCFGRDGKQLAALSSQS---QLFDTMEHAIAAIRPQLQAGDMVLL 407


>gi|239994466|ref|ZP_04714990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii ATCC
           27126]
          Length = 452

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 138/422 (32%), Gaps = 54/422 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNPA--VEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIGLSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGM--SHL 172
            GKTTT  M+   L                 GVP     +    +  F + E     S  
Sbjct: 112 HGKTTTSSMVAWILEHAGLNP-----GYLIGGVPENFGVSARVGESPFFVIEADEYDSAF 166

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R      RP   VI  +   H   F+ +  I +    +   + + G I    +    
Sbjct: 167 FDKRSKFVHYRPKTLVINNLEFDHADIFADLGAIQTQFHHLVRMVPENGLILTPNNTPAI 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E +  K          S GK  +A+   +         +  +     +  V    +G H 
Sbjct: 227 EDMLKKGCWSS---RQSLGKEWHAELLKKD-----GSEFNVLHNGVIAGTVTWALVGQHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +         +  AI ALS F   + R +       +     + + +  +P +
Sbjct: 279 VDNALMAIAAAHHAGVTLPDAIDALSFFKNVKRRME----VKGEVNNITLYDDFAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS--- 407
           +   +  L      G  R +AVL    E    +     H D     S      V+L    
Sbjct: 335 IATTLDGLR--KKVGNARILAVL----EPRSNTMKMGVHKDTLAN-SWQKADEVYLYEPE 387

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINL 463
           G     +      +   H    ++ +   + +    GD ++V  SN  GF     R+++ 
Sbjct: 388 GMDWSLVDSVAHSNAPTHCFRDVEKIVQGVCNVAQPGDHILV-MSNG-GFEGIHGRILDA 445

Query: 464 LL 465
           L 
Sbjct: 446 LK 447


>gi|284800049|ref|ZP_05985544.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
 gi|284796233|gb|EFC51580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria subflava NJ9703]
          Length = 472

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 112/412 (27%), Gaps = 50/412 (12%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D++ +I +  +P             LA     +    ++ + G+ GKTTT  ML   L  
Sbjct: 92  DVIEAILNKGLPYISGP------QWLAENVLHQH--WVLGVAGTHGKTTTASMLAWVLEY 143

Query: 133 IK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLV 182
                                    P           F + E                  
Sbjct: 144 AGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSKFVHY 201

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP  A++  +   H   F+ +  I +    +   +   G I  N      +    K    
Sbjct: 202 RPRTAILNNLEFDHADIFADLAAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGCWT 261

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++   +       +   +     ++ S+           V    +G H   N L  +  
Sbjct: 262 PVEKFGT-------EQGWQVGTVRADGSFDVRHHGETVGHVAWDLMGGHNRMNALAVIAA 314

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISV 359
                 D+ TA +ALS F   + R +             F     +       ++  +  
Sbjct: 315 ARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQRVGN 374

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDA 417
              ++          LG M      S            L +   V+    G      +  
Sbjct: 375 ARILTVLEPRSNTMKLGTMKAALPES------------LNDADQVFCYAGGVDWDVAEAL 422

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 423 APLGSKLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALK 472


>gi|53720587|ref|YP_109573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia pseudomallei
           K96243]
 gi|52211001|emb|CAH36989.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei K96243]
          Length = 494

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 129 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 185

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 186 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 246 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 302

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 303 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 358

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 359 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 412

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 413 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 470

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 471 GGVHQKLLDALSA 483


>gi|114330275|ref|YP_746497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
 gi|122314675|sp|Q0AJD9|MURD_NITEC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|114307289|gb|ABI58532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosomonas
           eutropha C91]
          Length = 470

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 130/392 (33%), Gaps = 34/392 (8%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+  G  +      +V +     + V G  D+   L  +A+         I+AITGS GK
Sbjct: 72  AISPGVAIA---EPLVQAALQQGVSVIG--DIE--LFAIALDQHAPPGTKILAITGSNGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           TT   M+     +        G+     +   +            + EL    L      
Sbjct: 125 TTVATMVGEMARNTGWDVEVAGNIGLAALDALMQRIDTGKWPHLWVLELSSFQL----ET 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T  +RP+ AV+  ++  HL  +  IEE A+AKA IF     +    LN +D+    +  +
Sbjct: 181 TSSLRPNAAVVLNLSEDHLDRYRIIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHE 240

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +         +FG S  A              W+                G H A N L 
Sbjct: 241 NSK-----QLTFGLSAPAFDDEFGVLPSGSDLWLAQGTTRLMKVSELAVAGLHNAANALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   +    +  + AL +F     R    +        T  D+S + N  S  AA++
Sbjct: 296 ALALCRAIDLPFEPLLHALHIFKGLPHRM---QKIAEFNGVTFYDDSKSTNVGSAVAALN 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                        I + G   +  + S        E     +   V L G     +  A+
Sbjct: 353 GFR-------KNVILIAGGDGKGQDFSP------LEQPVSKHTRGVVLLGRDAEKISQAI 399

Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ VH   TMD            GD V++
Sbjct: 400 QGCNVPVHRVATMDEAVRVSFLLAERGDSVLL 431


>gi|307298498|ref|ZP_07578301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915663|gb|EFN46047.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 441

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/376 (16%), Positives = 111/376 (29%), Gaps = 51/376 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
             + + T+I +TG+ GK+TT  ML   +S   +          ++G PL      V  D+
Sbjct: 104 WSKPRGTVIGVTGTNGKSTTVTMLRHIISGKNRKVFQG----GNLGYPLAGVAEEV-YDY 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L         VR H++ +  +   HL     I++   +K  + +  E    
Sbjct: 159 YVLEVSSFQLKWFAEER--VRFHLSAVINLGEDHLDYHRSIDDYFKSKLRLAKMTEGITV 216

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +     D   ELLK       +     F        ++R  +  +               
Sbjct: 217 VPKAVADCQKELLKGSKLRPFVALGEGFDSFDREHLRVRGIEFRTSDLPFTGLHNY---- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                            L ++ I      +A               R +           
Sbjct: 273 --------------ENVLVVLLISQLIGLSAEDVFQELKSYTFLSHRLQLVRELEGVKYY 318

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  ++       + +      + I +LG     G      + +L E L      
Sbjct: 319 DDSKATNAHAVS------AALRSFEPSKTILILG-----GREKDETYSELIEQLGQLK-- 365

Query: 403 HVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS------- 452
           HV + G  +  L   L  R I V  +  M       +     GD VV+    S       
Sbjct: 366 HVVMLGSSMKILSAKLQMRGIPVSGAANMADAVKICRGLAAKGDNVVLSPAGSSYDLYIN 425

Query: 453 ---NSCGFYRLINLLL 465
                  F  ++  L 
Sbjct: 426 YSERGNHFREIVTALE 441


>gi|240950384|ref|ZP_04754647.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
 gi|240295098|gb|EER45930.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor NM305]
          Length = 475

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 150/450 (33%), Gaps = 56/450 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   ++      IPV        A 
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAIDESNPEVAAAKEARIPVIQ-----RA- 108

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA   R R     IAI G+ GKTTT  M+++  +        +               
Sbjct: 109 QMLAEIMRFRHG---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKS---AGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWME 273
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   +  +  
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V   G+ +EV+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +               V+    PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
              +  +          I      G     L  ++     V          L   +   +
Sbjct: 394 QVDALIMLNVYAAGEAPI-----VGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQII 448

Query: 442 VDGDVVVVKSS-NSCGFYRLINLLLEEFPA 470
            DGD+++ + + N     R    L E + A
Sbjct: 449 QDGDLILAQGAGNVSKLSR---DLAESWKA 475


>gi|167721280|ref|ZP_02404516.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei DM98]
 gi|167817467|ref|ZP_02449147.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 91]
 gi|167904331|ref|ZP_02491536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei NCTC 13177]
 gi|217420664|ref|ZP_03452169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
 gi|254180598|ref|ZP_04887196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|184211137|gb|EDU08180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 1655]
 gi|217396076|gb|EEC36093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 576]
          Length = 504

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWVLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   E + ++     ++    FG          +     +  +       +   V    
Sbjct: 256 RDDALERVLSRGCWSDVER---FGVDGGWQALPVENGVPVDGRFAVYWRSERVGAVDWQV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRTRIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|160935708|ref|ZP_02083083.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441452|gb|EDP19162.1| hypothetical protein CLOBOL_00598 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 92/324 (28%), Gaps = 29/324 (8%)

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                   +IG P T   + +  D   + E+    L          RP+++ I  I P H
Sbjct: 134 YEETFVVGNIGDPYTSKVLEMTEDSVTVAEVSSFQL----ETIMDFRPNVSAILNITPDH 189

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L+    +E     K  +     K   + LNYDD                  +S  +    
Sbjct: 190 LNRHGTMENYIRIKECVTLNQTKEDAVVLNYDDPVLREFGQNPELKPRVIWFSSREMLKD 249

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
            F +         + +  Q   +++ V  H +      N    +   +I           
Sbjct: 250 GFCMD------GDNIVYCQNGRQTVVVNVHDMQLLGRHNYENAMAAAAIALEMGVPMSDI 303

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
             V         R      +      ++S   NP +   A+  +        G  + + G
Sbjct: 304 TRVIEGFHPVEHRIEFVRERTGVRYYNDSKGTNPDAAIQALRAM-------PGPTLLIAG 356

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLF 434
                G    S + +         + ++ L G     + +   +     + Y+E M    
Sbjct: 357 -----GYDKNSEYDEWVSEF-EGKVRYLVLIGQTRDKIAECAKKHGFTEIMYAEDMQEAV 410

Query: 435 LFIQSSLVDGDVVVV---KSSNSC 455
                    GD V++    +S   
Sbjct: 411 QVCAVYADIGDYVLLSPACASWGM 434


>gi|307610451|emb|CBX00022.1| hypothetical protein LPW_17781 [Legionella pneumophila 130b]
          Length = 441

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 129/375 (34%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 81  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 135

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 136 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 195

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G+++     +          +  
Sbjct: 196 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGEAEWVAELIDDS----GSQFKI 251

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G   EV    IG    +N L  +        +   A KAL  F P + R +     
Sbjct: 252 LHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPVKRRLE----V 307

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +  A
Sbjct: 308 RSNRHGITVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAA 361

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +   +      +  + +   I  ++ +GD V+V  
Sbjct: 362 EMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVNEIIKAVREGDAVLV-M 420

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 421 SNR-GFNGIHQQLID 434


>gi|54294640|ref|YP_127055.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
 gi|53754472|emb|CAH15956.1| hypothetical protein lpl1717 [Legionella pneumophila str. Lens]
          Length = 455

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 129/375 (34%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 95  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 149

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 150 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G+++     +          +  
Sbjct: 210 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGEAEWVAELIDDS----GSQFNI 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G   EV    IG    +N L  +        +   A KAL  F P + R +     
Sbjct: 266 LHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPMVAAKALEQFSPVKRRLE----V 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +  A
Sbjct: 322 RSNRHGITVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAA 375

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +   +      +  + +   I  ++ +GD V+V  
Sbjct: 376 EMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNEEIVKEIIKAVREGDAVLV-M 434

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 435 SNR-GFNGIHQQLID 448


>gi|30061655|ref|NP_835826.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 2457T]
 gi|30039897|gb|AAP15631.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
 gi|313646529|gb|EFS10990.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2a str. 2457T]
          Length = 438

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDCHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L+ L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LVRYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|299065670|emb|CBJ36843.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CMR15]
          Length = 449

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 105/364 (28%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP    +       DF + E 
Sbjct: 93  VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGQSARLTASDFFVIEA 147

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 148 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLV 207

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+      +    FG    A + +       + S+  +        V  
Sbjct: 208 NGREDSLKRVLARGCWSEAE---FFGAEDGAGWAIAN--LGDDDSFDVMLDGQVQGRVRW 262

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 263 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGITVYDDFAHH 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 323 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGGRD 382

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 383 AI-----GWDLAGALAPLGERAQAFSDLTALVEAVTAAARPGDHVLV-MSNG-GFGGVHQ 435

Query: 463 LLLE 466
            LL+
Sbjct: 436 KLLD 439


>gi|270295451|ref|ZP_06201652.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
 gi|270274698|gb|EFA20559.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           D20]
          Length = 444

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 120/373 (32%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 101 NAKMVCITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGNSLALQVATEQHDYYVIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   +++   AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTSEDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         ++  K   A   +   +    +       Q        
Sbjct: 213 WNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQE-----EL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R             + I++S
Sbjct: 268 ALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRL---EKVATVRGVSFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++       G+ + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMT-------GKTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L     R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGDQFKACVRAL 444


>gi|327399667|ref|YP_004340536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
 gi|327182296|gb|AEA34477.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hippea maritima
           DSM 10411]
          Length = 435

 Score = 62.6 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/414 (16%), Positives = 125/414 (30%), Gaps = 53/414 (12%)

Query: 71  NTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +  +++     S P       + +  +++L +  R  +K  IIAITG+ GK+TT  ++  
Sbjct: 55  DEVVLSPGVKPSHPFVKHCRSNRIKLISELELGYR-YAKGKIIAITGTNGKSTTVALVER 113

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L    K          + G+P     +  + ++ + E     L  I       +P+IA 
Sbjct: 114 ILKGASKRV----IACGNYGLP-LSEAIYENAEYYVVEASSYQLEFIDKF----KPNIAA 164

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  IA  HLS    ++    AK +IF+   +      N  DS+                 
Sbjct: 165 ILNIAFDHLSWHGSMDNYIEAKKKIFKNQLEDDFFIKNDSDSYI-------FDGKANLFL 217

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
              + +NAD    K      +                   G   ++          I   
Sbjct: 218 VSKRDRNADCFFEKNGVIVNRPEYL----------RIDKTGLFGSKVFENIAFAALIGLL 267

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                     V         R             ++S   N  +++AAI+          
Sbjct: 268 CGIEKKTIKEVVGTMSNLEHRIEFVDEIDGVKFYNDSKATNLDAVEAAINSFD-----EG 322

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            + + +LG     G+     +  L  +L       V + G     + + L   + V    
Sbjct: 323 IKIVIILG-----GKHKGESYSRLLPLL-EKRARAVVVYGEDRKVILNELDGFLPVPLPA 376

Query: 429 -TMDGLFLFIQSSLVDGDVVVVK--SS----------NSCGFYRLINLLLEEFP 469
             + G            DVV+     S              F + + +  +E+ 
Sbjct: 377 VNIWGAVRAAFEVASKDDVVLFSPGGSSCEPYKNFEERGEAFKKEVEVFKKEYE 430


>gi|329895277|ref|ZP_08270919.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
 gi|328922399|gb|EGG29742.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium IMCC3088]
          Length = 452

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 111/375 (29%), Gaps = 49/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA +I ITGS GK+T   ++   L+      A  G+ +     P  LA +  D++
Sbjct: 109 FMEAAKAPVIGITGSNGKSTVTTLVGEMLAKAGLRAAVGGNLS-----PAALAILDDDIE 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L     L       +AV+  +   H+ +   +              +   
Sbjct: 164 VYVLEMSSFQLERSNALGL----DVAVVLNVTADHIDHHGSMAAY--------HAAKHRI 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      + +  +        +  +G   + D    ++K  ++  WM V       
Sbjct: 212 FRKAKAVVVNDDDVLTQPLVDSTVQVTRYGAKAHRDA---EFKLLNDALWMGVSKIIDVS 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+   G   H     L  L   +I       A    +      G   R R        T 
Sbjct: 269 EMALRGRHNH-----LNALVACAIAACFDVAAEAMAATLRTFSGLPHRCRVVQTIAGVTY 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +       L+ I   G    + +L      G+   +    +   +     
Sbjct: 324 INDSKATNVGA------ALAAIEGIGPNSDLVLLAGGLGKGQDFSALVPAINRYVRE--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V + G     L  ALP        E +             GD V++    +S      
Sbjct: 375 --VIVFGEAAGELA-ALPLLRPAIQVENLQQAVSRAAEIAQPGDTVLLSPACASMDQFKN 431

Query: 453 ---NSCGFYRLINLL 464
                  F   ++ L
Sbjct: 432 YQDRGDQFSDCVSSL 446


>gi|320179650|gb|EFW54599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           ATCC 9905]
          Length = 438

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +        G+          L  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGGNVGVGGNIGL-----PALMLLDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLCIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|324112499|gb|EGC06476.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia
           fergusonii B253]
          Length = 438

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALIL-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H      L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLAH-----YLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|300905497|ref|ZP_07123261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300919643|ref|ZP_07136134.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|301303812|ref|ZP_07209932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|300402647|gb|EFJ86185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 84-1]
 gi|300413283|gb|EFJ96593.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 115-1]
 gi|300840939|gb|EFK68699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 124-1]
 gi|315253162|gb|EFU33130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 85-1]
          Length = 438

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALHPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|217032142|ref|ZP_03437641.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298736442|ref|YP_003728968.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
 gi|216946132|gb|EEC24741.1| hypothetical protein HPB128_186g8 [Helicobacter pylori B128]
 gi|298355632|emb|CBI66504.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori B8]
          Length = 493

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 125/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQATFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +THL+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITHLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLLDSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHKGRKVIVTPGLVESNTESNETLAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|323935140|gb|EGB31507.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1520]
          Length = 438

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LEDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLASLRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|296133661|ref|YP_003640908.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola sp. JR]
 gi|296032239|gb|ADG83007.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermincola potens
           JR]
          Length = 454

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 87/319 (27%), Gaps = 39/319 (12%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+    L  I       +P +++I    P HL      E    AKA IFE     
Sbjct: 160 DIIVAEVSSFQLECIHRF----KPKVSIILNFTPDHLDRHGTFENYILAKARIFENQGPE 215

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN+DD        +  A  I         K    +  +      Q   +V      
Sbjct: 216 DFAVLNFDDPKVAACAEQVKAQVIFFSRRHKLEKGVYVRQDRIIIDLGQGSKDVC----- 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  I      N+   L   +              V     G   R           
Sbjct: 271 ---SVKDIFIRGNHNLENALAATAAAATLGVEPEVIAEVLRTFRGVPHRMEHVAEIDGVA 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   NP +   A+    Q      G            G    S     A  +    
Sbjct: 328 YINDSKGTNPDAAMKALDSYDQPLVLIAG------------GRNKGSDFTAFAAKVRE-K 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + + G     + +++ +    +++ + T++            G++V++    +S   
Sbjct: 375 VRALVVLGECADEIIESMNKVGFSNIYRAHTLEEAVRKAAEVANPGEIVLLSPACASWDM 434

Query: 453 ------NSCGFYRLINLLL 465
                     F  ++  L 
Sbjct: 435 FKDFEQRGEKFKEVVLSLR 453


>gi|118594410|ref|ZP_01551757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
 gi|118440188|gb|EAV46815.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylophilales
           bacterium HTCC2181]
          Length = 481

 Score = 62.6 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 118/392 (30%), Gaps = 33/392 (8%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V+D+   L  +           II +TG+ GKTTT   L     S+       G+    
Sbjct: 109 VVNDIFLFLKFIEKNNHRVKNLKIIGVTGTNGKTTTCFFLEHLYKSLGVNVRVAGNIGLS 168

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL L      ++  I E+    L         V+  + ++  ++P HL     +EE 
Sbjct: 169 ---PLELIDDLDYIEIIILEISSFQLLPFISKGLPVKLDVGILLNLSPDHLDIHKNMEEY 225

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              KAE+    ++T        ++  E           +        K+     + ++  
Sbjct: 226 YQTKAELLRSSKRTVVSHNLGLNTSTEFTDISFGEGFEEVSKINNNGKSLIKYRQYFQYN 285

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +  + +   + +  ++   G    +     +    V   +++    I A     P    
Sbjct: 286 KKYIFDDQGFRVEINKLKITGGHNLLNITAGIAAFRVLGGSSNRLKNILAEFKGIP---- 341

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R             ++S   N AS  AA+                +L    E    S 
Sbjct: 342 -HRIEWVRLLNDVDYFNDSKGTNVASTVAALENFRDKK-------NIILIAGGESKGQSL 393

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDG 444
               D  +     N++H+ L G      ++      +  +   E+MD             
Sbjct: 394 LPLRDHIK----RNVTHLLLIGKDAKLFEECFKDIITTQIVRYESMDDAVCHAYRFARKH 449

Query: 445 DVVVV---KSS---------NSCGFYRLINLL 464
            V+++    SS             F  ++  L
Sbjct: 450 GVILLSPACSSIDMYKNYTERGNHFKEIVQRL 481


>gi|326779864|ref|ZP_08239129.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
 gi|326660197|gb|EGE45043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces cf.
           griseus XylebKG-1]
          Length = 472

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/390 (16%), Positives = 121/390 (31%), Gaps = 40/390 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLT 127
           +  +  +     +PV+G  DV     +LA   R    R  A  +A+TG+ GKTTT  ML 
Sbjct: 80  DKPLFLAAAEAGVPVWG--DV-----ELAWRLRGDDGRKPAPWLAVTGTNGKTTTVRMLA 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +       +G+    +   L       + D    EL    L         +R H A
Sbjct: 133 SILRAAGLRTEAVGNIGVSL---LDAVVGETEYDVLAVELSSYQLHWA----PSLRAHSA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +  +AP HL     +E  A+ K  ++EG        +  D +  +L++      G + I
Sbjct: 186 AVLNLAPDHLDWHGSMEAYAADKGRVYEGNTVACVYNV-ADPATEDLVREADVEEGCRAI 244

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +              +++++  + +          +      N+   L   ++  
Sbjct: 245 GFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEVSDVDPPAPHNIANALAAAALAR 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A                    R     +      +D+S   N  + +A+++    I    
Sbjct: 305 AFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDSKATNTHATEASLAAYDSIVWIA 364

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G       D   +G              +   +  V L G     +++AL R       
Sbjct: 365 GGLAKGATFDELVIG--------------AAKRLRGVVLIGADRALIREALTRHAPEVPV 410

Query: 428 ETMD--------GLFLFIQSSLVDGDVVVV 449
             +D                    GD V++
Sbjct: 411 VDLDRTDTGAMSEAVARAAELARPGDTVLL 440


>gi|2149895|gb|AAC45626.1| D-glutamic acid adding enzyme [Staphylococcus aureus]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 128/394 (32%), Gaps = 49/394 (12%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D          
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV-----IESEELKAKTLYFSTQQEVDG------IYI 252

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +  ++  +             G H  +N+L  +    +    +   I +L+ F   E R 
Sbjct: 253 KDGFIVYKGVRIINTEDLVLPGEHNLENILAAVLACILAGVPIKAIIDSLTTFSGIEHRL 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYVGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              +L   +   +   ++     +  L     +   V  +  ++     +Q  +   DVV
Sbjct: 358 EFDELIPYMENVSREWLYSDSRKLSLLNYGNSQGKSVIEANNVEDAVDKVQDIIEPNDVV 417

Query: 448 VV---KSS---------NSCGFYRLINLLLEEFP 469
           ++    +S               + I       P
Sbjct: 418 LLSPACASWDQYSTFEERG---EKFIERFRAHLP 448


>gi|258511259|ref|YP_003184693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477985|gb|ACV58304.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 458

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/398 (15%), Positives = 121/398 (30%), Gaps = 51/398 (12%)

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
           +      V DV     ++A     R    I AITGS GKTTT  ++   L +        
Sbjct: 98  IKAAHVIVTDV-----EIASWFERR---PIYAITGSNGKTTTTTLVGEMLKASGYH---- 145

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                +IG P+         D  + E+    L           P    +    PAHL   
Sbjct: 146 PIVAGNIGTPVCDVVDQPG-DLLVLEVSSFQLDGTH----TFHPRGGALLNFYPAHLDYH 200

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
              E    AK ++F          LN+D     L++ ++  L  +      +    D   
Sbjct: 201 GTYEAYQQAKWKLFANQTPDDVAILNWDQ---ALVRDRAGELAARVRGFSLEGAPFD--- 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +     + + + V+ + ++  +    +      N+       ++  A   +      V 
Sbjct: 255 -EGVGVIDGALVAVRGRERTPILPVDQVALPGRHNLQNAAAAAALALAAGASVEAVARVL 313

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              +G   R             ++S   NP + + A+    +      G     +     
Sbjct: 314 ATFQGVEHRLEFVREVSGVRYYNDSKATNPDAARQALRSFERGVVWIAGGLDRGISFDPL 373

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQ 438
           + ++S               +    L G     L++ L R+      ++ +M+       
Sbjct: 374 LPDISGR-------------VRAAVLLGETKEKLREVLARAGVSTCAFAASMEEAVREAS 420

Query: 439 SSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                GDVV++    +S             F   ++ L
Sbjct: 421 RMAEPGDVVLLSPACASWDMFPSYEVRGSMFKEAVHRL 458


>gi|182439212|ref|YP_001826931.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178467728|dbj|BAG22248.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 476

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 121/390 (31%), Gaps = 40/390 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLT 127
           +  +  +     IPV+G  DV     +LA   R    R  A  +A+TG+ GKTTT  ML 
Sbjct: 84  DKPLFLAAAEAGIPVWG--DV-----ELAWRLRGDDGRKPAPWLAVTGTNGKTTTVRMLA 136

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +       +G+    +   L       + D    EL    L         +R H A
Sbjct: 137 SILRAAGLRTEAVGNIGVSL---LDAVVGETEYDVLAVELSSYQLHWA----PSLRAHSA 189

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +  +AP HL     +E  A+ K  ++EG        +  D +  +L++      G + I
Sbjct: 190 AVLNLAPDHLDWHGSMEAYAADKGRVYEGNTVACVYNV-ADPATEDLVREADVVEGCRAI 248

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +              +++++  + +          +      N+   L   ++  
Sbjct: 249 GFTLGAPGPSQLGVVDGILVDRAFVADRHKQAQELAEVSDVDPPAPHNIANALAAAALAR 308

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A                    R     +      +D+S   N  + +A+++    I    
Sbjct: 309 AFGVQPAAVRDGLRAFRPDAHRIEHVADLDEVRYVDDSKATNTHATEASLAAYDSIVWIA 368

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G       D   +G              +   +  V L G     +++AL R       
Sbjct: 369 GGLAKGATFDELVIG--------------AAKRLRGVVLIGADRALIREALTRHAPEVPV 414

Query: 428 ETMD--------GLFLFIQSSLVDGDVVVV 449
             +D                    GD V++
Sbjct: 415 VDLDRTDTGAMSEAVARAAELARPGDTVLL 444


>gi|77166314|ref|YP_344839.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
 gi|122063251|sp|Q3J787|MURD_NITOC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76884628|gb|ABA59309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani ATCC 19707]
          Length = 453

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 126/407 (30%), Gaps = 53/407 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +  +  IPV  V D+     +L  +     KA +I ITGS GK+T   +L    
Sbjct: 86  SEPAILAARARGIPV--VGDI-----ELFASY---VKAPVIGITGSNGKSTVTSLLEAMA 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +          ++G P          D  I EL    L      T+ +    A + 
Sbjct: 136 RQAGRQV----LAGGNLGTPALELLEKPVPDLYILELSSFQL----ETTYTLDAVAACVL 187

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I+P H+  +  ++    AKA I+ G        +N DD     L               
Sbjct: 188 NISPDHMDRYPDLDAYCQAKARIYRGTGTM---VINADDFRVASLVQ------PHRPCLR 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                        ++ + ++W+    +           G H   N L  L +   +    
Sbjct: 239 FTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGLPR 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              + AL  F     R                ++S   N  +  AAI  +       +G+
Sbjct: 299 AAMLSALQAFSGLPHRC---EWLAEVNGVRWYNDSKGTNVGATVAAIEGIPC-----QGK 350

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I + G + +  + S      L +         V L G     L+  L     ++   +M
Sbjct: 351 LILIAGGVGKGADFSP-LSKPLIQRARA-----VVLMGQDASRLEAVLASGPPLYRVNSM 404

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           D   +        GD V++    +S             F + +  +L
Sbjct: 405 DEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQAVREIL 451


>gi|116626353|ref|YP_828509.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|122251657|sp|Q01Q46|MURD_SOLUE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116229515|gb|ABJ88224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 442

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 121/382 (31%), Gaps = 49/382 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           +LA       K   I ITGS GKTTT  +    L               +IG+P+T    
Sbjct: 94  ELAAPFL---KGRTIGITGSNGKTTTTSLTGHILREAGV----PVQVGGNIGLPVTAMVE 146

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D  + + EL    L       H  R HI +   +   HL      E  A+ K  +FE
Sbjct: 147 SSRDDGWNVLELSSFQL----ETIHEFRAHIGLALNVTQNHLDRHHTFENYAAIKGRLFE 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +      LN +D       A++ A              +  +          + + + 
Sbjct: 203 TQQAGDYAVLNAEDPVCVAYAARTRATV---------QWFSSRKKVDPGATLCGNKLVLF 253

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H  +N+L      S    +      A+  F   E R +  R    
Sbjct: 254 GKLLMEAGEIPIRGRHNIENVLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFVRKLNG 313

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   +  +   A+           G    +LG     G+     +  L E 
Sbjct: 314 VD---FYNDSKATSVDATLKALDAF-------PGGLWVILG-----GKDKGLDYAALREP 358

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
           L+    + + +       + + +  ++ +  ++T+DG      +    GD V++    +S
Sbjct: 359 LTEKARAALLIG-AAAGKIAEQIAGAVPLVDAKTLDGAVRHAFAHAAPGDTVLLAPACAS 417

Query: 453 ---------NSCGFYRLINLLL 465
                        F +++N L 
Sbjct: 418 FDQFKSYEHRGETFKQIVNGLE 439


>gi|254436097|ref|ZP_05049604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
 gi|207089208|gb|EDZ66480.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosococcus
           oceani AFC27]
          Length = 463

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/407 (17%), Positives = 126/407 (30%), Gaps = 53/407 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +  +  IPV  V D+     +L  +     KA +I ITGS GK+T   +L    
Sbjct: 96  SEPAILAARARGIPV--VGDI-----ELFASY---VKAPVIGITGSNGKSTVTSLLEAMA 145

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +          ++G P          D  I EL    L      T+ +    A + 
Sbjct: 146 RQAGRQV----LAGGNLGTPALELLEKPVPDLYILELSSFQL----ETTYTLDAVAACVL 197

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I+P H+  +  ++    AKA I+ G        +N DD     L               
Sbjct: 198 NISPDHMDRYPDLDAYCQAKARIYRGTGTM---VINADDFRVASLVQ------PHRPCLR 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                        ++ + ++W+    +           G H   N L  L +   +    
Sbjct: 249 FTLGMPAVDEYGLQERAGETWLVRGHERLLSARRLPLAGRHNLANALAALALGEAVGLPR 308

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              + AL  F     R                ++S   N  +  AAI  +       +G+
Sbjct: 309 AAMLSALQAFSGLPHRC---EWLAEVNGVRWYNDSKGTNVGATVAAIEGIPC-----QGK 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I + G + +  + S      L +         V L G     L+  L     ++   +M
Sbjct: 361 LILIAGGVGKGADFSP-LSKPLIQRARA-----VVLMGQDASRLEAVLASGPPLYRVNSM 414

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           D   +        GD V++    +S             F + +  +L
Sbjct: 415 DEAVVKANVLAQSGDCVLLSPACASFDMYADFEARGQAFRQAVREIL 461


>gi|94676958|ref|YP_588950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|118595641|sp|Q1LSW4|MURD_BAUCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94220108|gb|ABF14267.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 446

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 113/348 (32%), Gaps = 33/348 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITG+ GK+T  +++    +              +IG P+    +     
Sbjct: 99  FLREVTVPVVAITGTNGKSTVAKLVGTMANCAGLKV----GVGGNIGYPVLSL-LQQSHQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++  +A I  I+  H+  +    +             K  
Sbjct: 154 LYVLELSSFQL----ETTKNLKVAVATILNISEDHMDRYPLGLQQYREAKLKIYKQAKIY 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            I  +   +       K +   IK     G     D+Q         + W+    +    
Sbjct: 210 IINDDDKLTLPANSTNKEYCSIIKFGIKSGHYCLGDYQ--------GKQWLMAYGKPLLD 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG H   N L  L +   +       + AL  F     R       L +     
Sbjct: 262 CNEIKIIGRHNLLNALAALALAEAIAIPRQACLIALRQFSGLMHRF---ELVLERKGIRW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S KAA++ L+      +G    +LG   ++ + S      L   +   NI
Sbjct: 319 INDSKATNVGSTKAALNELTV-----DGTLHLLLGGDGKLADFS-----SLQPFVQGNNI 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            H++  G     L      S     ++T+      I + +  GDVV++
Sbjct: 369 -HLYCFGKDSKKLAALNQHS--ATITQTLSQAMHIINNQVKAGDVVLL 413


>gi|168789615|ref|ZP_02814622.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
 gi|261226845|ref|ZP_05941126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255249|ref|ZP_05947782.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. FRIK966]
 gi|189370788|gb|EDU89204.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC869]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKFSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G   + L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGVQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|164686367|ref|ZP_02210397.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
 gi|164601969|gb|EDQ95434.1| hypothetical protein CLOBAR_02805 [Clostridium bartlettii DSM
           16795]
          Length = 451

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 27/290 (9%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F I EL    L          +P +++I  ++P HL+    +E    AKA IF+  +K  
Sbjct: 160 FLITELSSFQL----ESIVDFKPRVSMILNLSPDHLNRHHTMENYIMAKANIFKNQDKND 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LNYDD     L +K +        S     +   Q  +    + +  + + +  + +
Sbjct: 216 FTILNYDDEAVRALSSKCN--------SQVLYFSRKHQGVRGIYLNNEGNIVINIDKEIV 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +      N+   +                  V    +    R            
Sbjct: 268 LLHEDELSLPGGHNLENCMAATLAAYVSGIDIEVIREVLKTFKAVEHRLEYVKTVNGVMY 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   NP S   A++   +      G            G    S + +L + ++  N+
Sbjct: 328 VNDSKGTNPDSTIKAVTSYKKPIILIAG------------GYDKDSTYDELLD-IAKQNV 374

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
             + L G     ++          +   + M            +GDVV++
Sbjct: 375 KALVLLGETASKIEACAKTKGFEIIKRVQNMKEAVETSAELANEGDVVLL 424


>gi|160946328|ref|ZP_02093537.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
 gi|158447444|gb|EDP24439.1| hypothetical protein PEPMIC_00288 [Parvimonas micra ATCC 33270]
          Length = 441

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 128/385 (33%), Gaps = 50/385 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              L +A  L  K  IIAITG+ GKTTT  ++     +             +IG+ +   
Sbjct: 92  YTDLELAYTLFPKRKIIAITGTNGKTTTTTLVGEIFKT----TNIKSKVVGNIGIGMLWE 147

Query: 155 RMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
               D +   I E+    L  I       +P+IA I  I P H+      +     K +I
Sbjct: 148 IFNSDDETVNIIEVSSFQLHNIE----NFKPYIASIGNITPDHIDWHGSFDNYIEDKLKI 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F+ ++K G + LN D    + +  K +            +KNADF L +         + 
Sbjct: 204 FKNMDKNGNLILNID----DEILGKINVENTNVTKISLNNKNADFYLSENNFYHNDKKLF 259

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                         +G H AQN+L++L I       +DT I A   F        R    
Sbjct: 260 SMKD-------LKILGKHNAQNVLISLAICYNYGIIMDTIIFACKNFGGV---EHRIEFV 309

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                    ++S   N  S   AI  L       E   I ++G     G         L 
Sbjct: 310 RELNGIKFYNDSKGTNVDSTIKAIEAL-------EKPIILIVG-----GYDKNVDFNPLF 357

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK- 450
           E  +   +  + L G       D+  ++   +         +          GD V++  
Sbjct: 358 ESFN-GKVKTLILVGDTKYKFYDSAKKNGFENNIIVNDYREVVEKCFEIAESGDNVLLSP 416

Query: 451 SS-----------NSCGFYRLINLL 464
           +S               F +L+N L
Sbjct: 417 ASASWDMFKSYEERGNLFKKLVNEL 441


>gi|332878268|ref|ZP_08445994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332683719|gb|EGJ56590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 444

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 118/407 (28%), Gaps = 52/407 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            D++       IP+        +  + A      + +TI+AITGS GKTTT  +      
Sbjct: 76  ADIIKKAREKQIPII-------SEIEFASQY---THSTIVAITGSNGKTTTTLLTHHIFK 125

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         +IG          +  + + E+    L  I        PHIAV+  
Sbjct: 126 QAGLEV----GLGGNIGYSFAELVAHSNPPYYVLEISSFQLDGIEHFA----PHIAVLLN 177

Query: 192 IAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +    E   ++K  I            + DD                  +S 
Sbjct: 178 ITPDHLDRYDYKFENYIASKFRIAMNQTANDYFIYDADDPVINDWLTTHPLKPKCIGFSI 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K  +    L+  K       M                G H  +N +       ++    
Sbjct: 238 EKELSEGAFLKDNKIHI----MLENQTTVIDVEEISLKGKHNIKNTMAAAVAARLVNIRN 293

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +  ++L  F     R +  +        T I++S   N  S+  A+  +        G 
Sbjct: 294 ASLRESLKGFQGAAHRLEEVKVVEGV---TYINDSKATNVNSVYFALDTIKTPIVWIVG- 349

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSET 429
                      G+   + +  L   +    +  +   G     +  +    I ++  + +
Sbjct: 350 -----------GQDKGNDYNSLLPYVHQ-KVKAIVCLGVDNTPILQSFYNVIDNMVETRS 397

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           M+      Q     GD V++    +S             F   +  L
Sbjct: 398 MEEAVKMAQRFATAGDTVLLSPACASFDLFKSYEDRGDQFKAAVAKL 444


>gi|323099951|gb|ADX23551.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLAFEMLKE---GKKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     + +P IA    +  AHL      EE   AKA IF+   +T  
Sbjct: 164 VVTELSSFQLMGVE----MFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A+  + G K ++S  K       +++     +   +          
Sbjct: 220 SVINADDADVMTLSAQ--SKGQKVLFSTTKEIEDGAYIKENALYYKGEKVAEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--HVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+    +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|239636340|ref|ZP_04677342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
 gi|239597695|gb|EEQ80190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           warneri L37603]
          Length = 449

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 125/395 (31%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++     + + T    G+     
Sbjct: 92  VKRGLKVLTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVSSKEYLITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D    K     
Sbjct: 204 NAKKQIYKNQTEDDYLICNYHQRHL-----IESENLKAKTLYFSTQQEVDGIYIKDGFIE 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +    + ++   +   H+      A    +  G+     AD  T    +          
Sbjct: 259 YKGVRIISVEDLVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRL------ 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYIGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +  +V  +  +      IQ  +   DV
Sbjct: 358 EFDELIPYMK--NVRVMVVFGETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYNTFEERG---EKFIESFRAHLP 447


>gi|108563149|ref|YP_627465.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
 gi|107836922|gb|ABF84791.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter pylori HPAG1]
          Length = 493

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 126/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 HLKVIAITGSFGKTSTKNFLLQILQTTFNVHASPKSVNTLLGIANDINQNLDDKSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLLDSVWERFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R +     L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIKRLVLELNPIAHRLQ----LLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   +GR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLHKGRKVIVTPGLVESNTESNETLAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|260172405|ref|ZP_05758817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides sp.
           D2]
 gi|315920701|ref|ZP_07916941.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694576|gb|EFS31411.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 444

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 119/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEDYHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK         ++  K   A   +   +       +   +     +   
Sbjct: 213 WNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGDQFKECVRAL 444


>gi|160883882|ref|ZP_02064885.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|237716646|ref|ZP_04547127.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|237720376|ref|ZP_04550857.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262405421|ref|ZP_06081971.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|293370476|ref|ZP_06617029.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|294646202|ref|ZP_06723856.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294809131|ref|ZP_06767849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298480582|ref|ZP_06998779.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
 gi|156110612|gb|EDO12357.1| hypothetical protein BACOVA_01855 [Bacteroides ovatus ATCC 8483]
 gi|229442629|gb|EEO48420.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp. D1]
 gi|229450127|gb|EEO55918.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_2_4]
 gi|262356296|gb|EEZ05386.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           2_1_22]
 gi|292634468|gb|EFF53004.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CMC 3f]
 gi|292638420|gb|EFF56784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           ovatus SD CC 2a]
 gi|294443685|gb|EFG12434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295086278|emb|CBK67801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           xylanisolvens XB1A]
 gi|298273403|gb|EFI14967.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           D22]
          Length = 444

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 119/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEDYHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK         ++  K   A   +   +       +   +     +   
Sbjct: 213 WNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGETVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGDQFKECVRAL 444


>gi|74318590|ref|YP_316330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
 gi|74058085|gb|AAZ98525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 466

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 109/364 (29%), Gaps = 31/364 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L   +      G     I     L+    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSAMLAWILEDARLH---PGFLVGGIPQNFGLSARLTDSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  I+ I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDIQAIETQFHHLVRTIPGNGLIVANG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++  + +  +     ++   S G            +  +  S+           V    
Sbjct: 222 REAALDRVLERGLWTPVERFGSIGGWT-------AGEADASGSFDVHFNSALQGRVRWEL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDE 344
           IG H   N L  +            AI ALS F   + R +             F     
Sbjct: 275 IGEHNRMNALAAIAAARHAGVPAAAAIDALSRFENVKRRMEIRGAVHGITVYDDFAHHPT 334

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +       ++A +     ++          LG M +            A   SL     V
Sbjct: 335 AITTTVQGLRAKVGNARILAVLEPRSNTMKLGVMKD------------ALPASLAGADEV 382

Query: 405 WLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +  G +    A +   P        + +D L   + +    GD V+   SN  GF  +  
Sbjct: 383 YCYGANLGWDAAEALAPLGEKARVFDNLDKLVAQLVADGRPGDHVL-MMSNG-GFGGIHA 440

Query: 463 LLLE 466
            LL+
Sbjct: 441 KLLD 444


>gi|189029216|sp|Q24ZG1|MURC_DESHY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 449

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 143/388 (36%), Gaps = 39/388 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N + +A    L+IPV+        L +L    R       IA+ G+ GKTTT  M+ +AL
Sbjct: 75  NHEEIARARELNIPVYSYP---QFLGRLMSKKRG------IAVAGTHGKTTTTAMIGLAL 125

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                    +   +    VP           DF + E        + +      P   +I
Sbjct: 126 LQSGIDPTIVVGSD----VPSIGGNAYSGQGDFFLAESCEYRRHFLNYS-----PEYLII 176

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I   H   F  ++++  A +EI + +   G IF+ ++D   + ++A+S       I +
Sbjct: 177 TNIEFDHPDYFKDLDDVVCAFSEIAQKIPPHGRIFIWHEDPQRKAIQAQS------PIIT 230

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           FG ++ AD      +   E S M +        E   H  G H   N L ++ +   +  
Sbjct: 231 FGLNEEADVYATNIQFHDEGSTMTIVAHGTVLGEFHLHVSGKHNILNALASIALCLEIGV 290

Query: 309 DVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +  +++LS F+  + R +            +         S             + + 
Sbjct: 291 PTEKVLESLSHFNGTKRRFEHIGQNAGALIVDDYAHHPTEIRSTLEGARLSFPDRRIRAV 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
             PH   R   +L +  +  + +      ++       N++ +        +L D + + 
Sbjct: 351 FQPHTFSRTEKLLQEFSQSFQAADEVVIAEIFASARETNLNTI-----SASSLADLISQQ 405

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            ++  Y  +++ +  ++  +L  GD+V+
Sbjct: 406 GVNARYIHSLEEIQTYLAQTLSPGDLVL 433


>gi|330686337|gb|EGG97942.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           epidermidis VCU121]
          Length = 449

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 125/395 (31%), Gaps = 52/395 (13%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++     + + T    G+     
Sbjct: 92  VKRGLKVLTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKNSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     ++ I EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVSSKEYLITELSSFQLLGIE----QYKPHIAIITNIYSAHLDYHESLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK +I++   +   +  NY                      F   +  D    K     
Sbjct: 204 NAKKQIYKNQTEDDYLICNYHQRHL-----IESENLKAKTLYFSTQQVVDGIYIKDGFIE 258

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +    + ++   +   H+      A    +  G+     AD  T    +          
Sbjct: 259 YKGVRIISVEDLVLPGEHNLENILAAVLAAILAGVPIKAIADSLTTFSGIEHRL------ 312

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +           ++S   N  + + A++  +Q      G            G    +
Sbjct: 313 ---QYIGTNRTNKYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGN 357

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +L   +   N+  + + G            +  +V  +  +      IQ  +   DV
Sbjct: 358 EFDELIPYMK--NVRVMVVFGETQEKFAKLGNSQGKYVIKATDVQDAVDKIQDVIEPNDV 415

Query: 447 VVV---KSS---------NSCGFYRLINLLLEEFP 469
           V++    +S               + I       P
Sbjct: 416 VLLSPACASWDQYNTFEERG---EKFIESFRAHLP 447


>gi|118474991|ref|YP_891986.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118414217|gb|ABK82637.1| Mur ligase family protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 478

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 117/345 (33%), Gaps = 30/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+       +  +    I
Sbjct: 155 SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 214

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE + + K E            
Sbjct: 215 AEAGARLKGDIKDITEFLEPHFVIVGEIGDAHIEYFKSIENVRATKLEALNSSR------ 268

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                        K+                 D  ++      +     +    K +   
Sbjct: 269 -----------IKKAFLHSSTLKNYDKNIVIYDILVKNIVSNLDGVKFSILYNAKELHFS 317

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L  +  T   A+      E R +R           +ID+
Sbjct: 318 SKLLGGFNAYNLCACILLAMELGVNEQTLQNAILKIKSVEHRLERIEAGGK----IIIDD 373

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   MK +  +++  S    G+++ +   + E G+ S   + +L++ ++      V
Sbjct: 374 SFNGNLKGMKESYELVNSYS----GKKVLLTPGIVE-GKSS--LNEELSKKINEV-FDIV 425

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++                V   +    +  F+ +  V GD+++ 
Sbjct: 426 VITNSLNEKSLTKFLVKPEVVLLKDRSQMQDFLANHTVAGDLILF 470


>gi|206602134|gb|EDZ38616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 487

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/401 (12%), Positives = 119/401 (29%), Gaps = 34/401 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDD---VLGALNKLAVAARL-----------RSKATIIAITGS 116
            +  + +   LS+P   V           + A                R+   ++A+ G+
Sbjct: 64  ESRAIEAREILSLPFVIVSPGVPTRKWAGQEAPLYIRNVMGEMEWASLRTSVPLVAVGGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  +L   L +  +     G++   +   +   R        +  + +S      
Sbjct: 124 NGKSTTSALLAHFLEAAGERVFLGGNFGTPLSEMVLSEREGSSPLPTVAVVELSSF--QA 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-----LNYDDSF 231
               + RP + ++  I P HL  +  ++    AK   F+ +EK                 
Sbjct: 182 ETMGVFRPVVNLLLNITPDHLDRYLSVDHYRRAKWNAFQTMEKDSFTVLNRDPACGVYPP 241

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           F  + ++             ++     +        +       +          G+G  
Sbjct: 242 FSPISSRLAWFYGSKEPCPDRTGGLILEGDPLSATLDGIEGLPPISWNLKNFPLEGMGNR 301

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR---GKRYRCALNQGFFTLIDESYNA 348
                 +   ++ +            ++            R            I++S   
Sbjct: 302 QNLAAALLGAVLYLQATGKHPEQATTALEKAAASFRGLPHRMEVVGEWKGIRFINDSKAT 361

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + + A+   +  SP        +LG     G    + +  L E +   ++  + + G
Sbjct: 362 NVDATRLALEGYAGHSP----IVHLILG-----GRDKGAPYAPLREGI-RTSVKSIAVLG 411

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +++ L   + +   E+++           +GD V++
Sbjct: 412 EAREKIREELGSLVPMTLCESLEEAVDVAAGQASEGDRVLL 452


>gi|318057552|ref|ZP_07976275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
 gi|318079765|ref|ZP_07987097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actF]
          Length = 474

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 126/387 (32%), Gaps = 39/387 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             + A+  +  +PV+G  DV     +LA   R    A  +A+TG+ GKTTT  ML+  L 
Sbjct: 84  KPLFAAAEAAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLSAILE 136

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +         +   +IGV L  A +  +  D    EL    L         VRPH A + 
Sbjct: 137 AAGHR----TAAVGNIGVSLLDAVLAEEPYDVLAVELSSYQLHWA----PSVRPHSAAVL 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +AP HL     +   A+ K  ++EG +           +   +  A          ++ 
Sbjct: 189 NLAPDHLDWHGSMAAYAADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTL 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + ++  + +     +++++  + Q          +      N+   L   ++  A  
Sbjct: 249 GTPRPSELGVVEG-YLVDRAFVPDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFG 307

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A    +          R            +D+S   N  + +A+++    I     G 
Sbjct: 308 VPATAVRAGLRAFRPDPHRIEHVATIDGVAYVDDSKATNTHAAEASLAAYEPIVWIAGGL 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                 D    G              +   +  V L G     +++AL R         +
Sbjct: 368 AKGATFDELVQG--------------AAKRLRAVVLMGRDRALIREALARHAPNVPVVDL 413

Query: 431 D--------GLFLFIQSSLVDGDVVVV 449
           D                    GD V++
Sbjct: 414 DRADTGAMSEAVREAAGLAESGDTVLL 440


>gi|307265084|ref|ZP_07546644.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919882|gb|EFN50096.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 464

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 138/403 (34%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP+    D    L  +    +       IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +      +      +        +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDGMGFDPTVLVGGEVDV--------LGGNVRVGNSEYFVTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNIYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  ++L D  E  + +      +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKI--IIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R     Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQRGKDALYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|256020074|ref|ZP_05433939.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella sp.
           D9]
 gi|300821907|ref|ZP_07102051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|309796078|ref|ZP_07690490.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331666325|ref|ZP_08367206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331680662|ref|ZP_08381321.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332281224|ref|ZP_08393637.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
 gi|300525507|gb|EFK46576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 119-7]
 gi|308120320|gb|EFO57582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 145-7]
 gi|331066536|gb|EGI38413.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli TA271]
 gi|331072125|gb|EGI43461.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli H591]
 gi|332103576|gb|EGJ06922.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sp. D9]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|241664199|ref|YP_002982559.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
 gi|240866226|gb|ACS63887.1| UDP-N-acetylmuramate [Ralstonia pickettii 12D]
          Length = 461

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 122/425 (28%), Gaps = 43/425 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I + + +G         ++ +I   ++P             L      +    ++A+ G+
Sbjct: 67  IGNVISRG-------NPLMEAILDRNLPYISGP------QWLGDNVLRQ--KWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGE 174
            GKTTT  ML   L                 GVP     +    + +F + E        
Sbjct: 112 HGKTTTTSMLAWVLQDAGYNP-----GFLVGGVPRNFGLSARLTESNFFVIEADEYDTAF 166

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  A++  +   H   F  +  I +    +   +   G + +N  +   
Sbjct: 167 FDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLVNGREDSL 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + +  +     ++   + G         +      + S+  V        V     G H 
Sbjct: 227 KRVLERGCWSEVEQFGAEG-----GSGWKIANLSDDDSFDVVFNGQPLGRVRWALQGDHN 281

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNAN 349
             N +  +     +      AI++L+ F   + R +      +      F     +    
Sbjct: 282 RMNAVAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVNDVTVYDDFAHHPTAIRTT 341

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              ++  +     ++          LG M +    S S    +    +      +     
Sbjct: 342 IEGLRRRVGEGRILAVLEPRSNTMKLGVMKQTLPDSLSGADQIFAYGAANGRDAI----- 396

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
                    P          +  L   + ++   GD V+V  SN  GF     +L++ L 
Sbjct: 397 GWDLAGALAPLGQRAKAFSDLTALVDAVTAAARPGDHVLV-MSNG-GFGGVHQKLLDALA 454

Query: 466 EEFPA 470
           E    
Sbjct: 455 ERAET 459


>gi|254369764|ref|ZP_04985774.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
 gi|157122723|gb|EDO66852.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. holarctica FSC022]
          Length = 416

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 70/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                                                +            D         
Sbjct: 187 KQ---------------------------------SKLNLAKFSNDFFVYDVHNGIKYAG 213

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q       +  +  +           N+   + +++IL        +A+      +G 
Sbjct: 214 EYQIIRGAIYRNSTKLLDIVETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 273

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 274 EHRCKIVKKVNGTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 329 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYYKYQLCNNMKQAFELASQKANSNEI 382

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 383 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 415


>gi|191167754|ref|ZP_03029561.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
 gi|190902180|gb|EDV61922.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B7A]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|329964558|ref|ZP_08301612.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
 gi|328524958|gb|EGF52010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides
           fluxus YIT 12057]
          Length = 466

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 116/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 123 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGSSLALQVATEKHDYYIIE 178

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 179 LSSFQLD----NMYKFRANIAVLMNITPDHLDRYDHCMQNYVDAKFRITQNQTPDDAFIY 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +   AK         ++  K       +   +    +       Q        
Sbjct: 235 WNDDPIIKRELAKHGLKAHLYPFAAVKKDGVIAYVEDGEVEINEPIAFNMEQE-----EL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 290 ALRGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRL---EKVATVRGVQFINDS 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ E L   N S + 
Sbjct: 347 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEI-EDLVRKNCSGLV 393

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 394 YLGLHNEKLHEFFDRMGLPVADVQTGMKDAVDAAFRLAKKGETVLLSPCCASFDLFKSYE 453

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 454 DRGDQFKACVRAL 466


>gi|320172821|gb|EFW48053.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae CDC 74-1112]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|149183844|ref|ZP_01862239.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
 gi|148848443|gb|EDL62698.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           SG-1]
          Length = 449

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 91/290 (31%), Gaps = 32/290 (11%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I       RP I++ T +  AHL     IE+ A AKA I     K  
Sbjct: 163 NIVIELSSFQLMGIEEF----RPKISIFTNLYEAHLDYHGSIEDYAKAKANITANQTKDD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N D      L + S A  I           +  +  +     +   +         
Sbjct: 219 YLVINADQPELAELLSFSKAQKIY---------FSTRRPLEKGASIKDGAIYYDDDKIME 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H  +N+L  +    +     +   + L  F   + R    +        + 
Sbjct: 270 TSLIALPGKHNLENILCAVIAAKLSGVSNEAIQEVLKTFTGVKHRT---QFVRTLNGRSF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + K+A+    Q +    G            G    +   +L   L   N+
Sbjct: 327 YNDSKATNVLAAKSALEAFDQPTILLAG------------GLDRGNSFDELIPYLK--NV 372

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G   +   +   ++    V   + ++           +GDV+++
Sbjct: 373 KALITFGETAVKFLETAAKAGIQTVKRVDNVEAAVPAAYEISEEGDVILL 422


>gi|82542692|ref|YP_406639.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii Sb227]
 gi|193065871|ref|ZP_03046932.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|193070830|ref|ZP_03051763.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194429374|ref|ZP_03061899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218693557|ref|YP_002401224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli 55989]
 gi|260842324|ref|YP_003220102.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|260853301|ref|YP_003227192.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|260866241|ref|YP_003232643.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|293476748|ref|ZP_06665156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|307311461|ref|ZP_07591103.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|118595690|sp|Q326E7|MURD_SHIBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81244103|gb|ABB64811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella boydii
           Sb227]
 gi|192926458|gb|EDV81091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E22]
 gi|192955860|gb|EDV86330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E110019]
 gi|194412594|gb|EDX28891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           B171]
 gi|218350289|emb|CAU95972.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           55989]
 gi|257751950|dbj|BAI23452.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O26:H11 str. 11368]
 gi|257757471|dbj|BAI28968.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O103:H2 str. 12009]
 gi|257762597|dbj|BAI34092.1| UDP-N-acetylmuramoyl-L-alanine: D-glutamate ligase [Escherichia
           coli O111:H- str. 11128]
 gi|291321201|gb|EFE60643.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           B088]
 gi|306908440|gb|EFN38938.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli W]
 gi|315059311|gb|ADT73638.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           W]
 gi|323157845|gb|EFZ43948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EPECa14]
 gi|323160114|gb|EFZ46075.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E128010]
 gi|323171251|gb|EFZ56899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           LT-68]
 gi|323176396|gb|EFZ61988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1180]
 gi|323181785|gb|EFZ67198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           1357]
 gi|323380131|gb|ADX52399.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Escherichia coli
           KO11]
 gi|323945717|gb|EGB41765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           H120]
 gi|324118438|gb|EGC12332.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           E1167]
 gi|332098911|gb|EGJ03862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           3594-74]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|187732828|ref|YP_001878898.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           boydii CDC 3083-94]
 gi|187429820|gb|ACD09094.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           CDC 3083-94]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|228476841|ref|ZP_04061486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
 gi|228251415|gb|EEK10560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           salivarius SK126]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 125/374 (33%), Gaps = 48/374 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+A II ITGS GKTTT  M+   L+         G  + +IG P +     V   D  +
Sbjct: 110 SEAPIIGITGSNGKTTTTTMIADVLN----HGGKSGVLSGNIGFPASEVAQSVTAQDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I        PHIAVIT + P H+      EE  +AK  I   +     + 
Sbjct: 166 MELSSFQLMGID----SFHPHIAVITNLMPTHIDYHGSFEEYVAAKWNIQNQMTADDFVV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L  ++ A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELATQTKAQVVP----FSTVEKVDG------AYLENGGLYFKGELVMQADE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +         + L+ F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVAKLSGISNQAIKETLASFGGVKHRL---QFVDTIDEVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELIPDI--TGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
            + G     +K A  ++   +  ++ +             GDVV++    +S        
Sbjct: 376 VILGESAPRVKRAADKAGVTYLDAKDVADATRIAFDQASAGDVVLLSPANASWDMYKNFE 435

Query: 453 -NSCGFYRLINLLL 465
                F   +  L 
Sbjct: 436 VRGDEFITTVEQLK 449


>gi|313885109|ref|ZP_07818861.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
 gi|312619800|gb|EFR31237.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eremococcus
           coleocola ACS-139-V-Col8]
          Length = 457

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 124/386 (32%), Gaps = 51/386 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLAR 155
           ++A      S+A +IAITGS GKTTT  ++   L               +IG+P+ ++  
Sbjct: 104 EIASWF---SQAPMIAITGSNGKTTTTALINEILGE-------KAILAGNIGIPILSVVG 153

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + E+    L          +P I VIT I P HL     +E   +AK +I  
Sbjct: 154 ETQADKRLVMEISSFQLQGTS----FFKPKIGVITNIYPTHLDYHGSMEAYIAAKLKIAA 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L++   +  NYD    +       A+ +    +         +L       +   +   
Sbjct: 210 NLDEQDFLVYNYDQEILQEAAKSIKAIKLPFSRT-----QVTPELVAEGLYLQDGQVIYH 264

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            Q           G H  +N+L  L +  I   D+      +  +        R     +
Sbjct: 265 NQPILSLDSIKIPGDHNIENVLAALAVAVIEKVDLPQVKATIEAYKG---MPHRIEHVAS 321

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  +   A++  +Q   +  G            G    +   DL   
Sbjct: 322 FKGREFYNDSKATNMTATITALASFNQDLIYIGG------------GLDRGNEFDDLIPH 369

Query: 396 LSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
           L   +I   +L G     +  A  +  I    ++ +         +   G V++     +
Sbjct: 370 L--GHIKQAFLYGETKEKMAKAFEKVDIPFVLADNLREASHLAYQATQAGQVLLFSPACA 427

Query: 452 S---------NSCGFYRLI-NLLLEE 467
           S             F  LI   + +E
Sbjct: 428 SWDQFKSFEIRGDQFKDLIAQYIQDE 453


>gi|258593038|emb|CBE69349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [NC10 bacterium
           'Dutch sediment']
          Length = 460

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 120/354 (33%), Gaps = 33/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      S AT I ITG+ GK+TT  ++   L               +IG PL     
Sbjct: 101 ELAYRY---SDATFIGITGTNGKSTTTTLIGAMLKQAGL----PSYVAGNIGTPLCRVAP 153

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            +   +  + EL    L  I       RP +A++  +AP HL  +  +E+   AKA IFE
Sbjct: 154 SLAAGECVVAELSSFQLETIDEF----RPRVALLLNLAPDHLDRYDQVEDYYRAKARIFE 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               +    +N DD     + A++    I    +      A  +  +     +     + 
Sbjct: 210 NQRPSDFAVINADDPLVLQVSAQARGRRIAFSRTRPLDTGAYVEDDQLMLALDGVREVIC 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H  +N L      ++          AL+ F   E R         
Sbjct: 270 RKS-----ELKIQGVHNLENALAAGLAAAVAGTPTTAIRIALTSFEGLEHRL---EFVAE 321

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  ++  ++   +          + + G   + G+ +      L  +
Sbjct: 322 IAGVRYINDSKGTNVGAVVRSLESFT-------NPVVLIAGGRDKHGDFAP-----LIPL 369

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +  + L G     L+  L          +++       ++   G+VV++
Sbjct: 370 VRER-VKRLILIGEAAETLRRMLASVCPTEVVSSLEEAVRRAAAAASPGEVVLL 422


>gi|110801072|ref|YP_697147.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens ATCC 13124]
 gi|168215153|ref|ZP_02640778.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
 gi|118595650|sp|Q0TMJ3|MURD_CLOP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110675719|gb|ABG84706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens ATCC 13124]
 gi|170713450|gb|EDT25632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens CPE str. F4969]
          Length = 458

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 118/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K+   D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEVCKKDDIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|167856479|ref|ZP_02479196.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
 gi|167852402|gb|EDS23699.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis 29755]
          Length = 475

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 82/450 (18%), Positives = 150/450 (33%), Gaps = 56/450 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   ++      IPV        A 
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQ-----RA- 108

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA   R R     IAI G+ GKTTT  M+++  +        +               
Sbjct: 109 QMLAEIMRFRHG---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKS---AGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWME 273
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   +  +  
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V   G+ +EV+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEVLLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +               V+    PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
              +  +          I      G     L  ++     V          L   +   +
Sbjct: 394 QVDALIMLNVYAAGEAPI-----VGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQII 448

Query: 442 VDGDVVVVKSS-NSCGFYRLINLLLEEFPA 470
            DGD+++ + + N     R    L E + A
Sbjct: 449 QDGDLILAQGAGNVSKLSR---DLAESWKA 475


>gi|149275988|ref|ZP_01882133.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
 gi|149233416|gb|EDM38790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pedobacter sp.
           BAL39]
          Length = 447

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 127/408 (31%), Gaps = 53/408 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
           T ++  I    IPV        +  + A      + A  I ITGS GKTTT  +    L 
Sbjct: 78  TPVIKEIKKNKIPVI-------SEIEFAKRY---THAKTICITGSNGKTTTSLLTYHILK 127

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                         +IG          + D+ + E+    L       +  R  +AV+  
Sbjct: 128 HAGLNV----GLAGNIGNSFAAQVATAEYDWYVLEISSFMLD----DMYDFRADVAVLLN 179

Query: 192 IAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +   +   A++K  I +   +  +     DD   E LKA         +Y F
Sbjct: 180 ITPDHLDRYDYKLGNYAASKMRIAQNQSEDDSFIYCADDE--ETLKAMKQQKVESRMYPF 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
              K+ + Q    +  +    + +  Q           G H   N + +  +  +L    
Sbjct: 238 SIRKHIE-QGAYLESNNIHININLNDQLTMSITDLALQGKHNIYNSMASGIVAKVLDIRN 296

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            T  +++  F   E R               I++S   N  S   A+  ++         
Sbjct: 297 ATIRESMGDFKNVEHRL---EHVAKISGVEYINDSKATNVNSTWYALESVNT-------D 346

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I ++G + +  +       ++ + +    +  +   G     + +A    + V    T 
Sbjct: 347 VILIMGGVDKGNDY------EMLKDMVRQKVRAIVCLGKDNKRIHEAFEDDVEV-IVNTF 399

Query: 431 D--GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                          G+ V++    +S             F   +  L
Sbjct: 400 SAHEAVQVAYHLAKKGNTVLLSPACASFDLFKNYEDRGNQFKAAVKEL 447


>gi|110680536|ref|YP_683543.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
 gi|118595688|sp|Q163I6|MURD_ROSDO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|109456652|gb|ABG32857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter
           denitrificans OCh 114]
          Length = 464

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 117/397 (29%), Gaps = 42/397 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--ATIIAITG 115
             ++ +  +  +     PV          VD D+       A  A         ++A+TG
Sbjct: 68  ACLIVSPGIPHLYPAPNPVVRLALQAGVPVDNDIGLFFRSFATNAWANFDTAPRVVAVTG 127

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+TT  ++   L           +   +IG  +     P D +  + EL        
Sbjct: 128 SNGKSTTSALIHHILE----HVGRPATLAGNIGRGVLDIDPPHDGEVVVLELSSYQTD-- 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--- 232
             L   + P +AV T ++  HL    G+    +AK  +F        I    +D      
Sbjct: 182 --LARSLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRAIVGVDEDEGLFLA 239

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             L        +  I    K     +Q+   K    +     Q+    +  V    G H 
Sbjct: 240 GQLAEGRADDRVIRISFAQKLTGPGWQVFARKGFLSEYRKGKQIASVDLRSVPGLPGVHN 299

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN      +   L         AL  F     R    +    +     +++S   N  +
Sbjct: 300 HQNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRS---QLVGQKDGVRFVNDSKATNADA 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A++    I     G      G M  +   S              ++   ++ G    
Sbjct: 357 AAKALAAFPSIRWICGGLEKD--GGMDALRNAS-------------ASVVKAYVIGREAA 401

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A    LP  +      TM             GDVV++
Sbjct: 402 AFAMKLP--VEAEICTTMAQAVEKAAREAEAGDVVLL 436


>gi|78065116|ref|YP_367885.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
 gi|77965861|gb|ABB07241.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. 383]
          Length = 512

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/479 (15%), Positives = 155/479 (32%), Gaps = 49/479 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLKAGDVFVAYA---VDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ + +     +     ++A +           I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPA-LDQLAGEIASSWYGDPSDSLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF----------------E 166
            + +  AL+++ +  A IG+     G+P  L                             
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGT--GMPGQLVPTGFTTPDASQLQRSLAQLRDAGAKAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      +   +AKA++F        +   
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRAAVINR 242

Query: 227 ---YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    E L  +   +      +     + +      +  +  +   ++      +V
Sbjct: 243 DDAAGQRLLEKLAGRVRTIAYGIGDASAPDADRELVALDVRATTTGTAFRLRSSWGDADV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +       D A+  ++      GR +R    L      ++ 
Sbjct: 303 EVGTLGTFNVSNLLAVLGSLLAADVPFDAALAEIARLESVNGRMQRLGGRLQNDEPLVVI 362

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +++  +  L  I+    GR + + G     G    +    L   ++      
Sbjct: 363 D-YAHTPDALEKTLDALRPIATARGGRLVCMFG----CGGDRDATKRPLMGAIAERFADE 417

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             ++  +  +         +   +    H    E      L         DVVV+  K 
Sbjct: 418 TVVTSDNPRSEDPQRIIDQIVAGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|319764371|ref|YP_004128308.1| udp-n-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|330826590|ref|YP_004389893.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
 gi|317118932|gb|ADV01421.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           BC]
 gi|329311962|gb|AEB86377.1| UDP-N-acetylmuramate/alanine ligase [Alicycliphilus denitrificans
           K601]
          Length = 477

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 87/442 (19%), Positives = 147/442 (33%), Gaps = 46/442 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A  +GA  VV +T +      +       IPV         +  LA   RLR 
Sbjct: 56  GH---AAAHIQGADAVVTSTAVQQDNPEVLAARERKIPVV----PRAVM--LAELMRLR- 105

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+        +     +            +   G  E
Sbjct: 106 --KGIAIAGAHGKTTTTSLVASVLAEAGLDPTFVIGGRLN--------SAGTNAKLGQGE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
             +    E       + P +AV+T I   H+  +             F   +   GT  L
Sbjct: 156 YIVVEADESDASFLNLLPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D+     +             S G    A        Q          +    ++VV 
Sbjct: 216 CVDNPAIRDILPSVTCPVTSYGLSEGAEVRALDVRAVGTQMHFSVQRRNGVTLPDLDVVL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DE 344
           +  G H   N L  + + + L    +  ++AL+ F     R +R+     Q        E
Sbjct: 276 NLAGEHNVLNALAAIAVATELNVPDEAVLRALAGFTGVGRRFQRHGDLPAQDGGRFTLIE 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A ++      P        VL         ++    D  +VL   +   +
Sbjct: 336 DYGHHPVEMAATMAAARGAYPGR----RLVLAFQPHRYSRTRDCFEDFVKVLGTADAVLL 391

Query: 402 SHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G   +   D   L R++ V       + + +  +   I +S  DGDVV+   + 
Sbjct: 392 TEVYAAGEAPIVAADGRSLARALRVAGAVEPVFIDDVADMPQRIAASAKDGDVVLCMGAG 451

Query: 454 SCGF--YRLINLL-LEEFPAIQ 472
           S G    +++ +L   E PA +
Sbjct: 452 SIGGVPAKIVEMLQKNELPAQE 473


>gi|229019116|ref|ZP_04175950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
 gi|229025359|ref|ZP_04181777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228735944|gb|EEL86521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1272]
 gi|228742132|gb|EEL92298.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus cereus
           AH1273]
          Length = 450

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 118/349 (33%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTMLAFEMLKE---GKKHPVIAGNIGTVACEVAQDAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +     + +P IA    +  AHL      EE   AKA IF+   +T  
Sbjct: 164 VVTELSSFQLMGVE----MFQPKIAAFLNLFEAHLDYHGTKEEYGLAKANIFKNQTETDY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD+    L A+  + G K ++S  K       +++     +   +          
Sbjct: 220 SVINADDADVMTLSAQ--SKGQKVLFSTTKEIEDGAYIKENALYFKGEKVAEVSD----- 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L    +     L  F   + R                
Sbjct: 273 --IVLPGKHNLENILAAMSIAKLLGVSNEAITVVLKSFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPIVLLAG------------GLDRGNEFDDLIPYFK--HVK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   +T+    +   +   DGDV+++
Sbjct: 374 AIVTFGQTAPKLVRAAEKAGLDVIESVDTLGEAVVKAYAHSTDGDVILL 422


>gi|226943451|ref|YP_002798524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azotobacter
           vinelandii DJ]
 gi|226718378|gb|ACO77549.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Azotobacter
           vinelandii DJ]
          Length = 448

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/438 (15%), Positives = 135/438 (30%), Gaps = 70/438 (15%)

Query: 62  QKGAGLVVVNT---DMVASIGSLSIPVFGVD----DV----LG--------------ALN 96
           ++GA   VV+T       +      P   V     DV                    AL 
Sbjct: 28  RQGARFAVVDTRANPPELATLKAQFPQVEVRCGELDVEFLCRASELYVSPGLALSTPALQ 87

Query: 97  KLAVA----------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             A                ++A I+AITGS  K+T   ++     +  +      +   +
Sbjct: 88  AAAARGVRLSGDIELFARYARAPIVAITGSNAKSTVTTLVGEMARAAGRRV----AVGGN 143

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           +G P     +   ++  + EL    L     L       +A    ++  H+  ++ ++  
Sbjct: 144 LGTPALDL-LDDGIELYVLELSSFQLETTERLNA----EVATCLNVSEDHMDRYADLQAY 198

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             AK  IF G  +      +          ++         ++FG  K  DF+     + 
Sbjct: 199 HLAKHRIFRGARQVVVNRDDA--------LSRPLVADRLPCWTFGLGKP-DFKGFGLLEE 249

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           + +  +  Q +           G H   N L  + +   +       ++ L  F     R
Sbjct: 250 NGEKCLAFQFETLMPVRELKIRGAHNQANALAAMALGHAVGLPFAPMLETLKRFAGLPHR 309

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  R     G     D+S   N  +    ++ +  +     G+ + + G   + G    
Sbjct: 310 CQWLRDVREVG---YYDDSKATNVGAA---LAAIEGLGADIAGKLVLIAGGDGK-GADFS 362

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           S    +AE     +   V L G     +   L  ++ +    T++       S    GD 
Sbjct: 363 SLRRPVAE-----HCRAVVLLGRDAGRIAVVLDGAVPLVRVGTLEEAVERSASLAEAGDA 417

Query: 447 VVV---KSSNSC--GFYR 459
           V++    +S      F  
Sbjct: 418 VLLSPACASLDMFRNFEE 435


>gi|294671080|ref|ZP_06735935.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307188|gb|EFE48431.1| hypothetical protein NEIELOOT_02788 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 458

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 118/416 (28%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HQHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  A++  +   H   F+ +E I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAILNNLEFDHADIFADLEAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +     ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGGVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL +   V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKA------------ALPASLNDADQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I      GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGKLHVDQDFDTFVAEIVKHAEAGDHILV-MSNG-GFGGIHGKLLEALK 458


>gi|327404198|ref|YP_004345036.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
 gi|327319706|gb|AEA44198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fluviicola
           taffensis DSM 16823]
          Length = 447

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 106/371 (28%), Gaps = 43/371 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  + ITGS GKTTT  ++   L               ++G          D +  + EL
Sbjct: 106 AKKVCITGSNGKTTTTMLIHHMLKKAGLKV----GLAGNVGYSFAKQVALEDNEIYVLEL 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLN 226
               L ++       +  IA++T I P HL  +   ++   ++K  I            N
Sbjct: 162 SSFQLDDME----DFKAEIAILTNITPDHLDRYEYNMQLYVNSKFRILNNQTAGDYFIYN 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD        K      K  +S  +           +            Q         
Sbjct: 218 ADDKTILAELEKRSISAQKLPFSLTQEFEQGAYTANKQLIIN-----FNNQFTMSIHELA 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  QN L +     IL    D   ++LS F   E R               I++S 
Sbjct: 273 LKGKHNTQNSLASGLAGRILDIRKDIVRESLSDFVNVEHRL---EFVAKVCGIEFINDSK 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S   A+  + Q +    G            G    + + +L E++    +  +  
Sbjct: 330 ATNINSTWFALESMEQPTIWIVG------------GVDKGNDYSELVELVKE-KVKAIIC 376

Query: 407 SGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
            G     + D     +     + +      +        + V++    +S          
Sbjct: 377 LGKDNQKIIDTFSGHVETIVEAGSAMEAVAYGYRLAKKDETVLLSPACASFDLFENYEDR 436

Query: 454 SCGFYRLINLL 464
              F   +  L
Sbjct: 437 GNQFKEAVRSL 447


>gi|301063235|ref|ZP_07203784.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
 gi|300442663|gb|EFK06879.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [delta
           proteobacterium NaphS2]
          Length = 467

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 117/380 (30%), Gaps = 36/380 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +T  + +     IP+ G         +LA          IIA TG+ GKTT    L   L
Sbjct: 92  DTPFMKAALKRQIPIIG-------EMELAARH---VDVPIIAATGTNGKTTVTSFLGRML 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IG PLT   M  +  D+ + E+    L  I   T    P I++I
Sbjct: 142 EDQGLAVFVG----GNIGTPLTAYLMGEMKADYLVVEISSFQLDTIERFT----PEISII 193

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+P HL  ++       +K  IFE      T+ LN D    +++  K+      ++  
Sbjct: 194 LNISPDHLDRYADYSAYIHSKLRIFENQGAGQTVILNDD----DIVLKKTTPPEGTSVLR 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G  K A        +    +  E      S   +           +++    + +    
Sbjct: 250 YGLKKGAGIDAFIENEGILSAVTEKGRFNLSAFSLPGAHNLENLLAVVLAGQALGLAPEP 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           +   I A      +  R         Q      ++S   N  +   A+    +      G
Sbjct: 310 IQKTINAFKGLSNRLERVCANGHGFLQKKVQFYNDSKATNVDAAVRAVQSFDKPLILIAG 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                       G    S +  L       ++      G     L +A         +ET
Sbjct: 370 ------------GRHKGSNYQPLVN-ACKGHVKGAVFMGESASLLAEAFTGETPFSLAET 416

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M             GDVV++
Sbjct: 417 MPDAVKKAAHMAESGDVVLL 436


>gi|294787078|ref|ZP_06752332.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
 gi|294485911|gb|EFG33545.1| UDP-N-acetylmuramyl-tripeptide synthetase (UDP-MurNAc-tripeptide
           synthetase) [Parascardovia denticolens F0305]
          Length = 546

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/487 (14%), Positives = 135/487 (27%), Gaps = 58/487 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+++       +     + ++ DSR+I         KG  +    ++  A   G    V 
Sbjct: 37  LESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFH-SSYLDQADALGLPCYVA 93

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTI 128
             D  ++  +L      V DV  AL  L+ A      S+  ++ ITG+ GKTTT      
Sbjct: 94  QEDFSSATKALG---IIVTDVRQALALLSAAFYGDPASQLKVVGITGTKGKTTTAYFTHA 150

Query: 129 A-------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHL 172
                                       N      L L RM         E   + +S  
Sbjct: 151 ILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMRQAVDAGMEYLVMEVSSQ 210

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    +R  +     I+P H+S       E+    K +I    +           S
Sbjct: 211 AYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQIAANSDNLVMNATMAHAS 270

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------------KQCSEQSWMEVQL 276
                     A         G+S +A  +  +                      +     
Sbjct: 271 LVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTVTASPLDPDPTLGFRISDG 330

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QG S +      G     N    + IV  L  D+     A ++   ++          + 
Sbjct: 331 QGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQALEAMEKVTISGRMETFSS 390

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              +L    Y  N  S  A +  + +     + R I V G     G  +     ++ +  
Sbjct: 391 PQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGSA---GNKAYDRRQEIVQAA 447

Query: 397 SLYNISHVWLSG----FHVLALKDALPRSI------HVHYSET---MDGLFLFIQSSLVD 443
                  ++         +  +   + +++      H    +    ++           +
Sbjct: 448 QDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRTHALEEAVRDAARHQEE 507

Query: 444 G--DVVV 448
           G   V++
Sbjct: 508 GGMTVIL 514


>gi|302518529|ref|ZP_07270871.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
 gi|302427424|gb|EFK99239.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           SPB78]
          Length = 474

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 124/387 (32%), Gaps = 39/387 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             + A+  +  +PV+G  DV     +LA   R    A  +A+TG+ GKTTT  ML   L 
Sbjct: 84  KPLFAAAEAAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILE 136

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +         +   +IGV L  A +  +  D    EL    L         VRPH A + 
Sbjct: 137 AAGHR----TAAVGNIGVSLLDAVLAEEPYDVLAVELSSYQLHWA----PSVRPHSAAVL 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +AP HL     +   A+ K  ++EG +           +   +  A          ++ 
Sbjct: 189 NLAPDHLDWHGSMAAYAADKGRVYEGNQVACVYNSADPATEELVRAADVEEGCRAIGFTL 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + ++  + +     +++++  + Q          +      N+   L   ++  A  
Sbjct: 249 GTPRPSELGVVEG-YLVDRAFVPDRAQQAQELAEVADVDPPAPHNIANALAAAALARAFG 307

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A               R            +D+S   N  + +A+++    I     G 
Sbjct: 308 VPATAVREGLRAFRPDPHRIEHVATIDGVAYVDDSKATNTHAAEASLAAYEPIVWIAGGL 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                 D    G              +   +  V L G     +++AL R         +
Sbjct: 368 AKGASFDELVQG--------------AAKRLRAVVLMGRDRALIREALARHAPNVPVVDL 413

Query: 431 D--------GLFLFIQSSLVDGDVVVV 449
           D                    GD V++
Sbjct: 414 DRADTGAMSEAVREAAGLAESGDTVLL 440


>gi|288939895|ref|YP_003442135.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
 gi|288895267|gb|ADC61103.1| UDP-N-acetylmuramate/alanine ligase [Allochromatium vinosum DSM
           180]
          Length = 475

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 141/419 (33%), Gaps = 48/419 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGA--LNKLAVAARL 104
           GH       +  A  VVV+T +  +   +       IP+     V  A  L +L      
Sbjct: 66  GHR-AEQVSE--ADAVVVSTAIDETNPEIQQARERRIPI-----VRRAEMLAELMRFYYG 117

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                 +A+ G+ GKTTT  ++   L+        +     +               + +
Sbjct: 118 ------VAVAGTHGKTTTTSLVASILAEGGLDPTFVIGGRLNS---AGANARLGSTKYLV 168

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTI 223
            E   S           ++P ++++T I   H+  +    + +     E    L   G  
Sbjct: 169 AEADES-----DASFLYLQPMVSIVTNIDADHMRTYGNDFDRLRQTFMEFLHHLPFYGLA 223

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME- 282
            L  DD     L  +        + ++G    AD +    +Q   ++   V         
Sbjct: 224 VLCIDDPEVRALVPEVPRP----VRTYGTRPEADLRASDIRQEGMRTSFLVHGAEFERPL 279

Query: 283 -VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V  +  G H   N L  + +   L  + +  ++AL+ F     R         QG   L
Sbjct: 280 AVTLNLPGRHNVLNALAAISVALELGVEDEAIVRALAGFQGVGRRFVAREVVDPQGRRLL 339

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYN 400
           + + Y  +P  + A ++   +       R + V           Q    +++        
Sbjct: 340 VVDDYGHHPRELAATLAAARE--GWPGRRLVLVFQPHRYSRTQEQFEDFVEVLSTPDALV 397

Query: 401 ISHVWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKS 451
           +  V+ +G   +   D  AL R+I V       +++ +D +   + + + DGD+++V  
Sbjct: 398 LCEVYPAGETPIPGADGRALSRAIRVRGELDPIFAQGLDAVPGLLANIIRDGDILLVSG 456


>gi|237753180|ref|ZP_04583660.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375447|gb|EEO25538.1| d-alanyl-d-alanine-adding enzyme [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 486

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 126/357 (35%), Gaps = 29/357 (8%)

Query: 95  LNKLAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLT 152
             KLA          TIIA+TGS GKT+ K  L+  L    K ++   S N   G+    
Sbjct: 149 YKKLAKDKLENFSNLTIIAVTGSYGKTSLKNYLSQILQESFKVHSTPRSVNTLTGIIADI 208

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    D  I E G    G+I+ +  L+ P I V+  I  AH+  F  IE I   K E
Sbjct: 209 NQNLSPLTDIYIVEAGARGSGDIKEIVELIAPQIVVVGKIGEAHIEYFKNIENIYRTKYE 268

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I E            +     +     +     +                 +   + +  
Sbjct: 269 ILESSRLQNAYIYKENIQPTNIQARIINFPQDPS---------------DIEATLQGTNF 313

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            ++++G+ +      +G     N+   + + S L    +  +K      P   R      
Sbjct: 314 SLKVKGEKLSFQTRILGAFNVINISAAIAVGSDLGISNERLVKQAQKLEPINHRLS---- 369

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +      ++D+SYN N   M  AI     ++    G++I V   + E    S+  +I L
Sbjct: 370 KIVVNDKIILDDSYNGNLDGMLEAIR----LASLHNGKKIIVTPGLVE---SSKEANIKL 422

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           AE +         ++G        +   S      +    +   ++S+   GD+++ 
Sbjct: 423 AEAIDKV-FDIAIITGELNANTLRSNIHSTQKILLKDKTNIEHMLKSTTNSGDLILF 478


>gi|331645198|ref|ZP_08346309.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
 gi|330909935|gb|EGH38445.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           AA86]
 gi|331045955|gb|EGI18074.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Escherichia
           coli M605]
          Length = 438

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 132/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WVNDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L  A+ R      +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQL--AVLRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|168218219|ref|ZP_02643844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
 gi|182379758|gb|EDT77237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens NCTC 8239]
          Length = 458

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 119/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K++  D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTEGEDAYYKDGKLYVHGKEVCKKDDIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGITKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|332976289|gb|EGK13149.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Desmospora sp. 8437]
          Length = 399

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 44/381 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---------- 152
                  +IA+TG+ GKTT   ++   L         IG+ N  IG              
Sbjct: 3   HPTHDLNLIAVTGTNGKTTVTHLIRNILRECGHETGLIGTINMQIGDETYPVKNTTPDAV 62

Query: 153 ------LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
                    +       + E   SH   +       R   AV T +   HL     ++  
Sbjct: 63  ELQRGFRKMVDRGCTHAVIEA-SSHALHLGRTRGC-RFKTAVFTNLTQDHLDYHGTMDHY 120

Query: 207 ASAKAEIFEG----LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
            +AK  +F                   +  +             + ++G    AD +   
Sbjct: 121 RAAKGILFGQLGNVYTDKAEDQPLAVLNIDDEAGEIYMETTSAQVITYGVEHPADVRGEN 180

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            +  S  +   +     S+++    +G     N L    +       ++   + LS    
Sbjct: 181 IRFYSGGTRFTLNTYRGSVDIDMKLMGKFSVYNALAAAAVALGEGISLEKIGEVLSRVKG 240

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR +                + ++         +VL+ +    +G  I V+G     G
Sbjct: 241 VPGRLEAVDAGQPFPVLVDYAHTPDS-------LENVLTTVRGFTKGNIICVVG---CGG 290

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPRSI------HVHYSETMDG 432
           +  +     +A + +  +   V  S          + D +   +       +        
Sbjct: 291 DRDRGKRPQMARIAAENSNRVVITSDNPRTEDPRRIIDDMLAGVKDFPEDRIQVIPDRAE 350

Query: 433 LFLFIQSSLVDGDVVVV--KS 451
              +        DVV++  K 
Sbjct: 351 AIGYAVRHAQADDVVLIAGKG 371


>gi|91785243|ref|YP_560449.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
 gi|91689197|gb|ABE32397.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase, MurC [Burkholderia
           xenovorans LB400]
          Length = 464

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPGIGRIVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     +    +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWETLPAEDGVPVDERFAVYHNSERVGAVEWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + L+ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAI---ETTLAGLRARVGRDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHTARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 448 GGVHQKLLDALSA 460


>gi|308063475|gb|ADO05362.1| UDP-MurNac-pentapeptide presynthetase (murF) [Helicobacter pylori
           Sat464]
          Length = 493

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/344 (20%), Positives = 129/344 (37%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    D  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSDIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+AV+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLAVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +    +   YS          ++  +   + +  E+ +         
Sbjct: 282 KAFCYSAEKIKPYAPKDSLLIDYSSL--------VKNIQSTLKGTSFEMLIGSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGKFNAYNIASAILIAKHLGLETERIKRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S      LA+ +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNIESNE---TLAQKIDEV-FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASQLKTPQKILLKDKVQLENILQATTIQGDLILF 485


>gi|167614196|gb|ABZ89700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 441

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/341 (17%), Positives = 108/341 (31%), Gaps = 35/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            II+ITG+ GK+T   M+                   +IGVP+    +   VDF I EL 
Sbjct: 107 PIISITGTNGKSTVATMVEKIAKKSGYKVCLG----GNIGVPILNM-LNQKVDFYILELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++  IAV+  I+  H++ +    +             +   + +   
Sbjct: 162 SFQL----ENTFTLKSKIAVVLNISEDHINRYPEGFKQYKKIKLSLYQRAEICIVNVK-- 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L         K   +FG   +        K       +  + +           
Sbjct: 216 ----NKLHDVIQTNKSKKYITFGTQNSDYQVHYNHK----NVILSRKNKKILDISQTLLW 267

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN L+ L I   +       I  L  F     R +             I++S + 
Sbjct: 268 GAHNHQNALVALAISDSIKCPRHCIITTLQKFSSLPHRLQIIHRKKGID---WINDSKST 324

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S K A++ L     +  G    +LG        S+S + ++ +         ++  G
Sbjct: 325 NVNSTKVALNSL-----NTSGTIRLLLGG------DSKSANFNILKDDFEKFKIKIYCFG 373

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +     +     Y +T+      I    + GD V++
Sbjct: 374 KDGKNISQICKK--KSIYFDTLQQAMKLIIKEAISGDTVLL 412


>gi|187251915|ref|YP_001876397.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
 gi|226711909|sp|B2KEW4|MURD_ELUMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|186972075|gb|ACC99060.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Elusimicrobium
           minutum Pei191]
          Length = 452

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 90/305 (29%), Gaps = 28/305 (9%)

Query: 146 HIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P   +       D  + E+    L +  +     +P+ A I  I P H+ +    +
Sbjct: 148 NIGCPLAEVMSEIKQHDLIVMEVSSYQLEDSSYF----KPYAATILNITPDHIDHHGSFK 203

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           +   AK++IF+   +     +N  D           +       +  +   +       +
Sbjct: 204 KYLDAKSKIFKFQTQKDIAVINSADKNCLKAAKNIKSKLYGFATTPLQQIRSHVFYDGDE 263

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                       +   +  V + +   +                +               
Sbjct: 264 LVFSAGERISPPKLPGIHNVENAMAASLLALAAGVDSQSIQQAFNKFK------------ 311

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +   + I++S   N  S   A+  +         +   +LG     G+ 
Sbjct: 312 TVEHRIELLGIKKGISFINDSKATNIDSTIIALRSM-----PDGKKTWLILG-----GQD 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             S +  L  +L       V L G     +K  LP   + +   T+D    +  ++    
Sbjct: 362 KGSPYGVLLPLL-ETKCKKVLLVGQAAAKIKKDLPGYKYFNVCGTIDKAVEYAFNNAQKE 420

Query: 445 DVVVV 449
           D++++
Sbjct: 421 DIILL 425


>gi|300173159|ref|YP_003772325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysine ligase
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887538|emb|CBL91506.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--lysineligase
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 491

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/482 (16%), Positives = 149/482 (30%), Gaps = 59/482 (12%)

Query: 6   TFHDLLQAIQGHSIGIVP--QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T   LL  I+   +   P      + +  D+R +        +KG       F    +  
Sbjct: 7   TIEQLL--IEQQLLVSKPNIDLAFDFLHYDTRQVKANTLLV-VKGA------FRPEYLTH 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSVGKTT 121
            A    +   +  +I  +S+P + V +V  AL  L++A     +    I A TG+ GKTT
Sbjct: 58  TAD---IEGLITETILDVSLPQWQVTNVQKALAVLSMAFFDYPQKALWIGAFTGTKGKTT 114

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--- 166
              M    L      +  + S  + I                    +  D+   +     
Sbjct: 115 AAYMAFNILKDATNNHTALFSTVDRITGTGPGDKKKSDLTTPESYELFKDMRQAVDNGMT 174

Query: 167 ---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTG 221
              + +S    ++   + +R ++     I+P H+        E+  + K  +F+  ++  
Sbjct: 175 HLIMEVSSQAYLKQRVYGLRYNVGAFLNISPDHIGPNEHPTFEDYLAHKMMLFDHSDQVI 234

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           ++H        +      +          S        L   + 
Sbjct: 235 VNAESEHLKTVLGHATQTHDKVYTYSLAGQGGNYSYVSRESAIHESRLIVEPSDLNELAG 294

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E   +  G     N +  L + ++  A  +  +  L           R       G    
Sbjct: 295 EYRLNLPGDFNESNAMAALIMTALAGAKHENMVHGLD----VVFIPGRMLSLPIVGHGVA 350

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             + Y  N ASM+A ++      P G+     VL  +   G    S   D   V+S    
Sbjct: 351 FVD-YAHNYASMRALLNFAQNQYPEGK-----VLVVVGSPGNKGVSRRADFGRVVSEL-A 403

Query: 402 SHVWLSGFH-----VLALKDALPRSIH-----VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             V+L+          A+ D +  +I+     VH+                + D+V+V  
Sbjct: 404 DIVYLTADDPQFESPKAIADEIAENINNKQLEVHFEMDRIKAIFQAIKQSGERDIVIVAG 463

Query: 450 KS 451
           K 
Sbjct: 464 KG 465


>gi|256751648|ref|ZP_05492523.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749457|gb|EEU62486.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 464

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 132/403 (32%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP+    D    L  +    +       IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +++     +                 +         ++ + E       E   
Sbjct: 119 GKTTTTSLIS---VILDGMEFDPTVLVGGEVDVIGGNVRVGSSEYFVTEAC-----EYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYEDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  ++L D  E  + +      +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKI--IIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|225619140|ref|YP_002720366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
 gi|225213959|gb|ACN82693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brachyspira
           hyodysenteriae WA1]
          Length = 471

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/377 (16%), Positives = 118/377 (31%), Gaps = 38/377 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            +V      +I +           ++  A         IA+TG+ GKTTT  ++   + S
Sbjct: 100 PIVEEAKRRNIKII---------GEIEFAYNFLPNRNYIAVTGTDGKTTTVTLVHDIIKS 150

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            KK        N              + +  I EL    L  +          IA +  I
Sbjct: 151 YKKARLLGNVGNTFS----KEIETIEEDEDVILELSSFQLETVEKFHAH----IAAVLNI 202

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
           A  HL  +  IE+  + K  I     K   + LNYD+ +  +   + +      + +F  
Sbjct: 203 AEDHLDRYKDIEDYFNTKKNITINQNKNDFLILNYDNIYTNIWYNELNGNCKMKLLTFSL 262

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                      +       +  + +          IG H   N+L  + I       V+ 
Sbjct: 263 KSKFATIYYNEEDEY----IYYENEKLFSIANRKVIGKHNIANILAAVLICLKDDIPVEY 318

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             KA++ F   E R               +++S   +  S+ +A+               
Sbjct: 319 IEKAVNNFKGIEHRV---ELVATINGVKYVNDSKATSMNSVMSALKSFD----------K 365

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
            ++  M    +     H      +    +  + L G    AL + L     +     +  
Sbjct: 366 DIILIMGGRNKNIDFTH---LNNIINARVKKLILIGEAAEALSEMLHFENKI-IVRDLTD 421

Query: 433 LFLFIQSSLVDGDVVVV 449
            F +  +  ++GD V++
Sbjct: 422 AFNYASAISINGDTVLL 438


>gi|209963945|ref|YP_002296860.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum centenum SW]
 gi|226706326|sp|B6IRG1|MURC_RHOCS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|209957411|gb|ACI98047.1| UDP-N-acetylmuramate--alanine ligase [Rhodospirillum centenum SW]
          Length = 482

 Score = 62.2 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 135/413 (32%), Gaps = 45/413 (10%)

Query: 53  GHDFILHAVQKG--AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           GH     A   G  A +V+ +     +   ++     V  V  A   LA   RL+     
Sbjct: 59  GHR----AENLGEAAVVVISSAVRTDNPEVVAARAALVPVVRRA-EMLAELMRLKWS--- 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M+   L         I     +    L         D+ + E   S
Sbjct: 111 VAVAGTHGKTTTTSMVAALLDGAGFDPTIINGGIIN---ALGTNARLGSGDWMVVEADES 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +   IAV+T + P HL  +   E+   A     E +   G   L  D  
Sbjct: 168 -----DGTFTKLPATIAVVTNMDPEHLDFYGTFEKEREAFDRFVENIPFYGFAALCTDHP 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEV 283
             + L A+      + I ++G +  AD +    +     ++ +VQ+             V
Sbjct: 223 EVQALVAR----ADRRIVTYGFNPQADVRAVNVEGDHRGAFYDVQVSERVTGEARTIERV 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  QN L  + +   +    +    + + F   + R         +    ++ 
Sbjct: 279 HLPMYGLHNVQNSLAAIAVAINMGIADEQIRASFARFSGVKRRFT----RTGESNGVVVI 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNIS 402
           + Y  +P  ++A +         G GR IAV+         S                ++
Sbjct: 335 DDYGHHPVEIQAVLKAARM---AGSGRTIAVVQPHRYSRLSSLFEEFCTCFNDADAVIVA 391

Query: 403 HVWLSGFHV------LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            V+ +G          AL + L    H  V    + + L   ++     GD+V
Sbjct: 392 DVYAAGEQPVEGASKEALVEGLRTHGHRNVQALPSPEALAGIVRELAQPGDMV 444


>gi|169343170|ref|ZP_02864191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
 gi|169298722|gb|EDS80798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens C str. JGS1495]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 119/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMD-----AEIDVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K++  D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTEGEDAYYKDGKLYVHGKEVCKKDDIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|146281466|ref|YP_001171619.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           stutzeri A1501]
 gi|145569671|gb|ABP78777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           stutzeri A1501]
          Length = 447

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 116/358 (32%), Gaps = 35/358 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           KA I+AITGS  K+T   ++    ++  +T     +   ++G P           + + E
Sbjct: 107 KAPIVAITGSNAKSTVTTLVGEMAAAAGRTV----AVGGNLGTPALDLLADDVDLY-VLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +   +A    I+  H+  +SG+     AK  IF G  +       
Sbjct: 162 LSSFQLETTE----QLNAEVATCLNISEDHMDRYSGLPAYHQAKHRIFRGARQVVVNR-- 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +   ++         ++FG  K  DF+     +   + ++  Q +         
Sbjct: 216 ------DDRLSRPLVGEDVPTWTFGLGKP-DFKGFGLFEEKGEKYLAFQFEALMPVRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   +       +  L  F     R    +    +   +  D+S 
Sbjct: 269 MRGAHNQSNALAALALGHAVGLPFGPMLDTLRRFTGLPHRC---QWVGERAGVSYYDDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    ++ +  +    +G+ + + G   + G    +    +A          V L
Sbjct: 326 ATNVGAA---LAAIEGLGADIDGKLVLIAGGDGK-GADFSALRAPVARYCRA-----VVL 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--GFYR 459
            G     L +AL  +  +    +++            GD V++    +S      F  
Sbjct: 377 LGRDAPRLDEALGEAAVLIRVASLEEAVQRAAECAEPGDAVLLSPACASLDMFKNFEE 434


>gi|167564145|ref|ZP_02357061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis EO147]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 93  VLAVAGTHGKTTTSSMLAWILEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 150 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +     ++ +       +   V    
Sbjct: 210 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPVDERFAVYWRSERVGAVDWQV 266

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 267 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 322

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P +++  I+ L         R +AVL    +  ++G +            SL +   V
Sbjct: 323 HHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMKLGTMKAQL------PASLADADLV 376

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL       H  + +  L   + ++   GD V+V  SN  GF
Sbjct: 377 FGYGAPTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLV-MSNG-GF 434

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 435 GGVHQKLLDALSA 447


>gi|110801958|ref|YP_699716.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens SM101]
 gi|118595651|sp|Q0SQ91|MURD_CLOPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110682459|gb|ABG85829.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens SM101]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 119/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K++  D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTEGEDAYYKDGKLYVHGKEVCKKDDIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKIAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|167586076|ref|ZP_02378464.1| UDP-N-acetylmuramate [Burkholderia ubonensis Bu]
          Length = 464

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 120/369 (32%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVSNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++  E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 REAALERVLARGCWSEVER---FGVDGGWQALAAEDGVPVDERFAVYWRGERLGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSVNGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGQQNARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL       H  + +  L   + +    GD V+V  SN  GF
Sbjct: 389 FGYGAPAGRDALGWNLGEALAPLGGKAHAFDDLHQLVTAVVAVARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|24111533|ref|NP_706043.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           flexneri 2a str. 301]
 gi|62900692|sp|Q83MF9|MURD_SHIFL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24050291|gb|AAN41750.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella flexneri
           2a str. 301]
 gi|281599450|gb|ADA72434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2002017]
 gi|332762278|gb|EGJ92545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2747-71]
 gi|332762649|gb|EGJ92914.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           4343-70]
 gi|332764934|gb|EGJ95162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-671]
 gi|332768878|gb|EGJ99057.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           2930-71]
 gi|333009070|gb|EGK28526.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-218]
 gi|333022251|gb|EGK41489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           K-304]
          Length = 438

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L+ L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALVALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LVRYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|296314257|ref|ZP_06864198.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
 gi|296839054|gb|EFH22992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria polysaccharea ATCC 43768]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 119/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNKGLPYISGPQWLAENVL-------------HRHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL +   V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKA------------ALPASLKDADQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|157692194|ref|YP_001486656.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           pumilus SAFR-032]
 gi|167017287|sp|A8FCX9|MURD_BACP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157680952|gb|ABV62096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus pumilus
           SAFR-032]
          Length = 451

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 121/387 (31%), Gaps = 42/387 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAA------RLRSKATIIAITGSVGKTTTKE 124
           + D+   I +  IP   V  V  AL +              + +  I ITGS GKTTT  
Sbjct: 71  DKDITILIKNPGIPYENVM-VQEALRRQIPVWTEIELAYHLTSSPFIGITGSNGKTTTTT 129

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++   L    +     G+      V   +A      ++ + EL    L      T   RP
Sbjct: 130 LIYEMLKKDSQKTLVAGNIGT---VASEVAANADGDEWIVTELSSFQLM----GTVEFRP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I++I  I  AHL      EE   AK ++F    +     +N DD     L   S A  +
Sbjct: 183 KISLILNIFDAHLDYHHTREEYEKAKQKVFVHQHEDDIAVINLDDPSVVKLAEGSKAKKV 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                         +  +     +   +    +           G H  +N+L  + +V 
Sbjct: 243 FFSV---------KEPVEHGAFIQHGAIYYMNEHIIDVKDVVLPGEHNQENILAAICVVK 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 D  +  L+ F   + R    +           ++S   N  +   A+S   Q +
Sbjct: 294 NAGCSNDAIVHVLTTFGGVKHRL---QFVDTIQSRKFYNDSKATNILATSKALSAFEQPT 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               G            G    +   +L   +   ++  +   G                
Sbjct: 351 ILLAG------------GLDRGNEFDELKPFMK--HVKGMITFGETAPKFVKLGEELGIH 396

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           HV + + ++       +   + DV+++
Sbjct: 397 HVKHVDNVEQAVPAAFNISEEEDVILL 423


>gi|325134330|gb|EGC56976.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M13399]
 gi|325206033|gb|ADZ01486.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M04-240196]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 123/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNLGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                +   + TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHVGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIKTTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPASLKEADQVFCYAGGVDWNVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|317012551|gb|ADU83159.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanine ligase
           [Helicobacter pylori Lithuania75]
          Length = 493

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/344 (19%), Positives = 124/344 (36%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGIF 165
              +IAITGS GKT+TK  L   L +    +A   S N  +G+       +    +  I 
Sbjct: 167 NLKVIAITGSFGKTSTKNFLLQILQTTFNAHASPKSVNTLLGLANDINQNLDDRSEIYIA 226

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E G  + G+I+ +T L+ PH+ V+  +   HL  F  +E I   KAE+ +          
Sbjct: 227 EAGARNKGDIKEITRLIEPHLVVVAEVGEQHLEYFKTLENICETKAELLDSKR-----LE 281

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E +K  +         S          ++  +   + +  E+ L         
Sbjct: 282 KAFCYSVEKIKPYAPKDSPLIDVSSL--------VKNIQSTLKGTSFEMLLDSVWESFET 333

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G   A N+   + I   L  + +   + +   +P   R       L      +ID+S
Sbjct: 334 KVLGEFSAYNIASAILIAKHLGLETERIRRLVLELNPIAHRL----QLLEVNQKIIIDDS 389

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +N N   M   I     ++   EGR++ V   + E    S        + +         
Sbjct: 390 FNGNLKGMLEGIR----LASLYEGRKVIVTPGLVESNTESNEALAQKIDGV----FDVAI 441

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++G        +  ++      +    L   +Q++ + GD+++ 
Sbjct: 442 ITGELNSKTIASKLKTPQKILLKDKAQLENILQATTIQGDLILF 485


>gi|209520749|ref|ZP_03269496.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
 gi|209498797|gb|EDZ98905.1| UDP-N-acetylmuramate [Burkholderia sp. H160]
          Length = 464

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 120/369 (32%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   + + G +  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRLGRVVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     + Q  +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWEIQPAEQGVPVDERFAVYHNGERVGVVDWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A K+LS F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAAKSLSGFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAI---ETTVAGLRARVGRDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 448 GGVHQKLLD 456


>gi|296125459|ref|YP_003632711.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
 gi|296017275|gb|ADG70512.1| UDP-N-acetylmuramate/alanine ligase [Brachyspira murdochii DSM
           12563]
          Length = 462

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 135/394 (34%), Gaps = 33/394 (8%)

Query: 66  GLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             VV ++ +  +   +         V      L +L            IAI+GS GKTTT
Sbjct: 68  TAVVTSSAISPANEEIVAAKAKKITVISRGEMLAELMRLRYG------IAISGSHGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +++  +        CI    NH  +        +  ++ + E   S           +
Sbjct: 122 TSLISQIMMHAGLNPVCI-IGGNHFNLKSNAVCNDLSSEYMVCEADES-----DGSFLRL 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I V+T I   HL  +  +E +  A  E    +   G  FL +++     L   ++  
Sbjct: 176 SPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLCFENDVVRDLSKSANK- 234

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                YS+G  K+ DF + K     E     ++    +    E     IG H   N L +
Sbjct: 235 ---KYYSYGFDKSYDFHVDKDSIRVEAPITYFIAYHNKECLGEFSVPLIGEHNILNSLAS 291

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMK 354
           +G+   L  DV    + L  F     R  +        F           +  ++  +  
Sbjct: 292 IGVAYHLGIDVPNIKEGLKTFEGVGRRLNKLYDKEITLFDDYAHHPTEIKATLSSVRNAY 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            +  +++   PH   R   +L D       +    I          I     +G +   +
Sbjct: 352 KSRRIIAVFQPHRYSRTELLLNDFEYAFNDADEVIITDIYAAGEAPI-----AGVNGEII 406

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            D + + + +V Y + +D +   ++S   DGD++
Sbjct: 407 CDIVKKQNKNVRYIKNIDEVLPVLESIKKDGDII 440


>gi|194397716|ref|YP_002037343.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae G54]
 gi|226722946|sp|B5E2Z8|MURD_STRP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4009480|gb|AAC95449.1| D-glutamic acid adding enzyme MurD [Streptococcus pneumoniae G54]
 gi|194357383|gb|ACF55831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae G54]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 136/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D +  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIATDKNTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLVKDLASKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|18311441|ref|NP_563375.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           perfringens str. 13]
 gi|30316081|sp|Q8XHM4|MURD_CLOPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|18146125|dbj|BAB82165.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Clostridium
           perfringens str. 13]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 118/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGRVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K++  D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTEGEDAYYKDGKLYVHGKEVCKKDNIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S    GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVNIAKSIAESGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|158522796|ref|YP_001530666.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
 gi|229486488|sp|A8ZXW2|MURC_DESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158511622|gb|ABW68589.1| UDP-N-acetylmuramate--alanine ligase [Desulfococcus oleovorans
           Hxd3]
          Length = 457

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 123/396 (31%), Gaps = 43/396 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   VA+     IPV         +  LA   RL+     I I G+ GKT+T  M
Sbjct: 72  SAIAADNPEVAAAREAGIPVI----PRAEM--LAEILRLKYS---IVIAGAHGKTSTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         +          +    +    D+ + E   S             P 
Sbjct: 123 VASVLGQGGMDPTVVIGGKLKS---IGTNAVLGHGDYIVAEADES-----DGSFLKFSPS 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I   HL  +  +  I+ +  E  + +   G   +  D+   + L          
Sbjct: 175 IAVVTNIDREHLDFYPDLAAISKSFLEFLDRIPFYGVAVVCLDNEPLQALVPLIKK---- 230

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD Q R     + +    V  + +    +     G+H  +N L  + +  
Sbjct: 231 RFITYGTSNQADLQARHITPINGKVRFSVVWRQEELGTIDLGVPGFHNVRNALAAVAVGL 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM----------K 354
            L        +AL      + R +       +    ++ + Y  +P  +           
Sbjct: 291 ELGLAFAVIKEALETMAGVQRRLE----KKGETGGVIVVDDYGHHPTEIKATLQGVRQHW 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
               V+    PH   R  A+  D            +        + I      G    ++
Sbjct: 347 EDRRVVVVFQPHRYSRTKALFDDFTRAFYQCDELVVLPIYAAGEHPID-----GVDGESV 401

Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
            + +    H  V Y E       +++  L  GD+++
Sbjct: 402 AEGIRAHGHKGVRYVEGRAEAVAYLKEILQKGDILL 437


>gi|295398675|ref|ZP_06808699.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
 gi|294973110|gb|EFG48913.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Aerococcus
           viridans ATCC 11563]
          Length = 462

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 104/345 (30%), Gaps = 28/345 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            ATII ITGS GKTTT  ++   L              N     L +A      D  I E
Sbjct: 115 DATIIGITGSNGKTTTTSLVGEMLGKAASLAGESYVGGNIGIPSLDIASKAEADDRLILE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          +PHIA IT I  AHL     ++   SAK +I         + LN
Sbjct: 175 LSSFQLMGTD----AFQPHIAAITNIYAAHLDYHGSMDGYISAKWQITANQTTDDFLILN 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D                 T  +         Q        +        +         
Sbjct: 231 ADQMDV--------FGDRTTKATVVPFSATTIQPDGAWFDQDSQNFIWHDEIVLNRKDFF 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G+H  +NML+ + I  +L    +     +S FH  + R    +           ++S 
Sbjct: 283 LPGHHNLENMLVAVAIGKLLGISNEEIKNGVSTFHGVKHRL---QFVAEIDGRRFYNDSK 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+   SQ     +   +  L      G    +   +LA+ +    +  + +
Sbjct: 340 ATNNDASITALDSFSQ-----KQDNVIWLAG----GLDRGNEVTELADHMDR--VKGMVV 388

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G                 +   E ++            GD +++
Sbjct: 389 FGQAADKFAGLGQNKGLTAIQQVEWIEEAVKAAYDMSAPGDTILL 433


>gi|306822449|ref|ZP_07455827.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553994|gb|EFM41903.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 515

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/466 (13%), Positives = 122/466 (26%), Gaps = 48/466 (10%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIG 79
                    I+ D+R++         KG  +    +F+    ++G    V   D      
Sbjct: 35  DNADVPFTHITYDTRTVREGTLLVC-KG-RF--RPEFLDGLKERGLVAYVSERDFSD--- 87

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
              +P   V+D   AL+ L+ A     +++ T+I ITG+ GKTTT       L++     
Sbjct: 88  HTEVPGLIVNDARKALSLLSAAFYGMPQNELTVIGITGTKGKTTTAYFTQAILNAYSNGR 147

Query: 138 A--CIGSYNNHIGVPL--------------TLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                       G  +               + R   D       + +S         H 
Sbjct: 148 CALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADNGMRYLVMEVSSQAYKVNRVHG 207

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           +   +     I+P H+S+      E+    K ++                         +
Sbjct: 208 LTFDVGAFLNISPDHISDIEHPTFEDYLYCKRQLAYHARAFVLNADADHADLIREDAQAA 267

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                        +        +       ++          E      G     N L  
Sbjct: 268 GIPLADFALRTDDAPTNATLTARPSNAEHSAFSIAANGHDLGEFSLSLAGDFNYANALAA 327

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +        D+A           GR             T+    Y  N  S++A I  
Sbjct: 328 VALAHEAGVPFDSAAMHAMESVHVPGR---MELFTGTDGDTVAIVDYAHNYTSVRALIDF 384

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALK 415
           + Q     + R   V G     G  +     ++ E         V+ +        + + 
Sbjct: 385 VEQRYCERKPRITLVAGSA---GNKAFDRRQEIVEAAQDRIARFVFTAEDTDTEPYIDIC 441

Query: 416 DALPRSIHVHYSE-----TMDGLFLFIQSSLVDG---DVVVV--KS 451
           + +   +   + +                        DV+++  K 
Sbjct: 442 NEMLGHVTNDHVDATVIVDRVKAIESAVEQAHSHDGLDVILIIGKG 487


>gi|187925394|ref|YP_001897036.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
 gi|187716588|gb|ACD17812.1| UDP-N-acetylmuramate [Burkholderia phytofirmans PsJN]
          Length = 464

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 118/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLGAIETQFHHLIRTVPGIGRVVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG          +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWQTLPAEDGVPVDERFAVYHNSARVGVVEWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAID---TTVAGLRARVGRHNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 448 GGVHQRLLDALSA 460


>gi|296160493|ref|ZP_06843309.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
 gi|295889242|gb|EFG69044.1| UDP-N-acetylmuramate [Burkholderia sp. Ch1-1]
          Length = 464

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 119/373 (31%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPGIGRIVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     +    +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWETLPAEDGVPVDERFAVYHNSERVGVVEWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAAQSLASFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + L+ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAID---TTLAGLRARVGRDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPTGRDALGWNLGEALAPLGGKAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 448 GGVHQKLLDALSA 460


>gi|219870392|ref|YP_002474767.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
 gi|254766005|sp|B8F3B7|MURC_HAEPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219690596|gb|ACL31819.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus parasuis
           SH0165]
          Length = 475

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 150/450 (33%), Gaps = 56/450 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV ++ +  S   ++      IPV        A 
Sbjct: 59  LAKAGAKV----FIGHQAENIEGASVVVASSAINESNPEVAAAKEARIPVIQ-----RA- 108

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA   R R     IAI G+ GKTTT  M+++  +        +               
Sbjct: 109 QMLAEIMRFRHG---IAIAGTHGKTTTTAMISMIYTEAGLDPTFVNGGLVKS---AGKNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIF 214
                 + I E   S    +      ++P ++V+T I P H+  +    E++        
Sbjct: 163 HLGASRYLIAEADESDASFLH-----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWME 273
             L   G   +  DD     +  K      + + S+G S+ AD+++  ++Q   +  +  
Sbjct: 218 RNLPFYGLAVMCADDETVMEIAPKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTV 273

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V   G+ +E++ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 VCPTGERIEILLNVPGRHNALNATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSF 333

Query: 334 LNQGFFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +               V+    PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVDVTIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
              +  +          I      G     L  ++     V          L   +   +
Sbjct: 394 QVDALIMLNVYAAGEAPI-----VGAESKDLCRSIRNLGKVDPILVSDTSQLGEVLDQII 448

Query: 442 VDGDVVVVKSS-NSCGFYRLINLLLEEFPA 470
            DGD+++ + + N     R    L E + A
Sbjct: 449 QDGDLILAQGAGNVSKLSR---DLAESWKA 475


>gi|319424769|gb|ADV52843.1| UDP-N-acetylmuramate/alanine ligase [Shewanella putrefaciens 200]
          Length = 488

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 136/393 (34%), Gaps = 33/393 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +       +   ++     V  V  A   LA   R R     +AI G+ GKTTT  ++  
Sbjct: 85  ISTAINAENPEIIAAKELRVPIVRRA-EMLAELMRYRHG---VAIAGTHGKTTTTSLIAS 140

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                 +    +            L     +   G     ++   E       ++P ++V
Sbjct: 141 VYGQAGRDPTFVIGG--------LLNSAGTNARLGTSRYLIAEADESDASFLHLQPMVSV 192

Query: 189 ITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +T I   H+  +    E++ S   +    L   G   +  DD     +  +      + +
Sbjct: 193 VTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRI----GRHL 248

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++G S +AD Q   + Q   Q    V+ +GK   +++ +  G H   N L  + + +  
Sbjct: 249 VTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATED 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    I+AL+ F     R +            ++ + Y  +P+ + A I       P 
Sbjct: 309 EIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPE 368

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDA 417
                  V+         ++  + D  EVLS  +   +          ++G    AL  +
Sbjct: 369 K----RLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPITGADGRALCRS 424

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +     +   +  + D L   +   L +GD+++
Sbjct: 425 IRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|332095379|gb|EGJ00402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella boydii
           5216-82]
          Length = 438

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +        G+          L  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGGNVGVGGNIGL-----PALMLLDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|168211219|ref|ZP_02636844.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|182626019|ref|ZP_02953782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
 gi|170710774|gb|EDT22956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens B str. ATCC 3626]
 gi|177908726|gb|EDT71237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           perfringens D str. JGS1721]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 118/385 (30%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                K  +  +TGS GKTTT  +++  LS              +IG P  +      + 
Sbjct: 111 FVRYCKGKVYGVTGSDGKTTTTTIVSKLLSQEGYKTWTG----GNIGTPLFSNIEEIKEE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          +A++T I P HL     ++E   AK  +F+   + 
Sbjct: 167 DKVVLELSSFQLMTMDVEI-----DVAIVTNITPNHLDMHKDMQEYIDAKKNVFKYQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++   + L  +  A G    +S  K+   D   +  K       +  +     
Sbjct: 222 DLLVINDENEITKNLDKE--AKGKVVRFSSKKTAGEDAYYKDGKLYVHGKEVCKKDDIII 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   +       +++  K    F     R +  R         
Sbjct: 280 K--------GMHNVENYLAAFLAVYDEVSIESMKKVAETFGGVHHRCEFIREVDGVK--- 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-- 398
             ++S  + P    A +    +      G                   H+    +     
Sbjct: 329 YYNDSIASTPTRTLAGLKAFEKPVILLAGGY---------------DKHVPFEPLAYEGY 373

Query: 399 YNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +K A  R        + V+  E+++ +    +S   +GD++ +  
Sbjct: 374 EKIKAIVLFGVTKEKIKAAFKRLEEEKGIHVPVYSGESLEEVVSIAKSIAENGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N +
Sbjct: 434 ACASFDMFKNFEVRGDKFKEIVNNI 458


>gi|157156086|ref|YP_001461258.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli E24377A]
 gi|209917281|ref|YP_002291365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli SE11]
 gi|218552671|ref|YP_002385584.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli IAI1]
 gi|300816126|ref|ZP_07096349.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300923130|ref|ZP_07139190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|301330131|ref|ZP_07222800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|157078116|gb|ABV17824.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           E24377A]
 gi|209910540|dbj|BAG75614.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           SE11]
 gi|218359439|emb|CAQ96977.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           IAI1]
 gi|300420585|gb|EFK03896.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 182-1]
 gi|300531333|gb|EFK52395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 107-1]
 gi|300843878|gb|EFK71638.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 78-1]
 gi|320200393|gb|EFW74979.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           EC4100B]
 gi|324017751|gb|EGB86970.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           MS 117-3]
          Length = 438

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFAGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|296113749|ref|YP_003627687.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
 gi|295921443|gb|ADG61794.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Moraxella
           catarrhalis RH4]
          Length = 469

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 135/413 (32%), Gaps = 46/413 (11%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           T  +A+  +  IPV  V DV   ++ L A      +   +IAITGS  K+T   ++    
Sbjct: 75  TPSIAAAKAQGIPV--VSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTVTTLVGEMA 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG P        ++D  + EL    L  I  L        A I 
Sbjct: 133 KRAGMIV----GVGGNIGTPALELLTIQNMDLVVLELSSFQLEHISNLAAQG----ATIL 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIY 248
            ++  HL    G+ +  + K  IFE  +       +          L+  +    I T  
Sbjct: 185 NLSADHLDRHDGMADYLAQKLRIFEHCQTAIICQDDAGLAKQCLTTLQRIAPNHTIITTN 244

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    + ADF L       +   +  Q             G H   N L  L + +    
Sbjct: 245 SLLSHQTADFYLFD---DGDGMALYHQKDKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F        R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTFKGL---PHRCEYIDDIDGKAYFNDSKGTNIGSTMAAIDGLGTV--YGT 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----H 423
                +LG + +  + S     +L+  ++ +    V+L G     ++  L +        
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVTQW-ADSVYLIGQDAPMIEQDLLKGDAHLVSK 410

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++   T+D   L    S      V++    +S             F  +++ L
Sbjct: 411 IYQVGTLDQAVLAASQSTAK--AVLLSPACASMDQFKNYNERGDKFVNMVHAL 461


>gi|167574659|ref|ZP_02367533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia oklahomensis C6786]
          Length = 470

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +     ++ +       +   V    
Sbjct: 222 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPVDERFAVYWRSERVGAVDWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAAALAAFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P +++  I+ L         R +AVL    +  ++G +            SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGGENSRILAVLEPRSNTMKLGTMKAQL------PASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL       H  + +  L   + ++   GD V+V  SN  GF
Sbjct: 389 FGYGASTGRDALGWSLPDALAPLGDKAHAFDDLHALVKAVTAAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 447 GGVHQKLLDALSA 459


>gi|325136319|gb|EGC58927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M0579]
          Length = 458

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 113/413 (27%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP   V+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +   + TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHVGVGIQTACEALSTFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKSALPESLKE------------ADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|307708861|ref|ZP_07645321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
 gi|307620197|gb|EFN99313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK564]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 132/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    S  IPV         L  L       S+A I+ ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALSKGIPVL----TEVELAYLI------SEAPIVGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      EE  +AK  I   +     + LN++    + L +K+ A        
Sbjct: 187 TNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELASKTQA-------- 238

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                    Q +      E   +  + +           G H  +N L T+ +  +   D
Sbjct: 239 --TVVPFSTQEKVDGAYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + I + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKADVSYVDAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|294506459|ref|YP_003570517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
 gi|294342787|emb|CBH23565.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salinibacter ruber
           M8]
          Length = 481

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/445 (17%), Positives = 128/445 (28%), Gaps = 60/445 (13%)

Query: 58  LHAVQKGAGLVVVNTDMVASIG-------SLSIPVF---------GVDDVLGA----LNK 97
             A   GA   +    +    G       +  + V           V   L A     ++
Sbjct: 60  QDAPSDGAAAALDEAGVEYEFGGHTAEALNADVLVLSPGVPTQSNIVQQALRAGLDVYSE 119

Query: 98  L-AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLAR 155
           + A +      A I+AITG+ GKTTT  +      +    T         +IG P +   
Sbjct: 120 IEAASWF--CDAPIVAITGTNGKTTTTSLTGHVFRTAFADTPGREAIVAGNIGYPFSDYV 177

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEI 213
           +  +  D  + E+    L  +       RP ++V+  I P HL  +    E  A AK  I
Sbjct: 178 LETEPTDVVVLEVSSFQLDHVE----TFRPRVSVLLNITPDHLGRYDHDFEAYAQAKHNI 233

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F    +   +  N DD        ++ A       +       +          +   + 
Sbjct: 234 FRNQGEGDVVVYNRDDDDVRDAVEEAAAEQGVRPMAI----TREGVPAAGAGFRDGRIVL 289

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    +      NM  +L                       EG   R    
Sbjct: 290 RTDDEDDSLMPQDELALRGRHNMYNSLAAAVSARVMEVENDVIRESLSGFEGVPHRLEEV 349

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   +++S   N  ++  A+    +      G            G    + + DL 
Sbjct: 350 RTVDDVLYVNDSKATNVNAVWYALESFDRPIVLIAG------------GRDKGNDYTDL- 396

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV--- 449
           + L    +  V   G     ++  L      H  + TM+      Q +   GDVV++   
Sbjct: 397 KPLVRDQVRAVVALGESTEKVERELGGEAPDHSRAATMEDALTQAQRAAQPGDVVLLSPA 456

Query: 450 KSS---------NSCGFYRLINLLL 465
            SS             F RL   LL
Sbjct: 457 CSSFDMYENYEERGDTFRRLAETLL 481


>gi|261885649|ref|ZP_06009688.1| Mur ligase family protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 412

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 118/345 (34%), Gaps = 30/345 (8%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S   I+ IT S GKT+ K  L   L      Y    S N   G+   +   +  +    I
Sbjct: 89  SNLKIVLITASFGKTSMKNFLYDMLKDDFNVYKTPRSVNTLSGIIRDINENLSFNTQIYI 148

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PH  ++  I  AH+  F  IE + + + E            
Sbjct: 149 AEAGARLKGDIKDITEFLEPHFVIVGEIGNAHIEYFKSIENVRALELEALNSSR------ 202

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                        K+                 D  ++        +   +    K +   
Sbjct: 203 -----------IKKAFLHSSTLKNYDKNIVIYDILVKNIVSNLHGAKFSILYNAKELHFS 251

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L  +  T   A+      E R +R           +ID+
Sbjct: 252 SKLLGGFNAYNLCACILLAMELGVNEQTLQNAILKIKSVEHRLERIEAGGK----IIIDD 307

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   MK +  +++  S    G+++ +   + E G+ S   + +L++ ++      V
Sbjct: 308 SFNGNLKGMKESYELVNSYS----GKKVLLTPGIVE-GKSS--LNEELSKKINEV-FDIV 359

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++                V   +    +  F+ +  V GD+++ 
Sbjct: 360 VITNSLNEKSLTKFLVKPEVVLLKDRSQMQDFLANHTVAGDLILF 404


>gi|255021544|ref|ZP_05293587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968932|gb|EET26451.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acidithiobacillus caldus
           ATCC 51756]
          Length = 460

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 129/420 (30%), Gaps = 47/420 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G     V   +   I   S P +        L              I+A+ G+
Sbjct: 67  VGNALSRGNPA--VEAVLAEGIPYDSGPAWL---TRELLA----------GRWILAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML      ++      G            +       F + E          
Sbjct: 112 HGKTTTTSMLA---WILEYAGLAPGFLIGGAPRNFPESGRLGSGPFFVIEADEYDTAFFD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP   ++  +   H   +  +  I +    +   +   G +         E 
Sbjct: 169 KRAKFVHYRPRTVILNHLEYDHADIYPDLAAIETQFHYLLRTVPANGQVLYRSGIPALER 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           + A+           F    + D +L         +W  ++      +V     G   A+
Sbjct: 229 VLARGCWSEAIP---FADGADWDLKLEDPA---GSAWQILEDGRAVGQVEWDLYGRFNAE 282

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +     +   V ++  AL+ F     R +      +   +    + +  +P ++ 
Sbjct: 283 NGLAAILAARHVGVPVASSCAALAHFAGVRRRLEERGRVADIRVY----DDFAHHPTAIA 338

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HI-DLAEVLSLYNISHVWLSGFHV 411
           A +  L    PHG       L  + E    +     H   LAE L+  +   V+      
Sbjct: 339 ATLRALRARQPHGR------LLAVLEPRSNTMRLGVHRGQLAESLAAADAVFVYAPPDLS 392

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
             +  AL +   V     +D L   + +S   GD ++V  SN  GF     RL+  L   
Sbjct: 393 WDVAAALGQPERV--FSDLDMLVDAVATSARPGDHILV-MSNG-GFGGIHERLLRALEAR 448


>gi|163746132|ref|ZP_02153491.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
 gi|161380877|gb|EDQ05287.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanibulbus indolifex
           HEL-45]
          Length = 472

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 125/416 (30%), Gaps = 49/416 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
           G  F   A +   GA ++V+++ +      L       +PV     V  A   LA   RL
Sbjct: 58  GRIFEGQAAENIEGAAVIVISSAIKPGNAELDEARRRGLPV-----VRRA-EMLAELMRL 111

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +S    IA+ G+ GKTTT  ++   L +           N  I             ++ +
Sbjct: 112 KSN---IAVAGTHGKTTTTTLVAELLVA---GGIDPTVVNGGIIHAYGSNARMGQGEWMV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S         + +   IA++T I P H+ ++   + +          +   G   
Sbjct: 166 VEADES-----DGTFNRLPATIAIVTNIDPEHMEHWGDFDTLRQGFLNFVSNIPFYGLAV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D    + L  K     + T     ++      L      +                 
Sbjct: 221 CCTDHPEVQSLVGKLTDRRVMTYGFNAQADVRAVGLHYKDGVAHFDVHLQSEDMVIENCA 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L   ++    AL  F     R  R            + +
Sbjct: 281 LPMPGDHNVSNALAAVTVARHLGMKLEQIRAALGSFGGVNRRFTRVGEVDG----VTVID 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLY 399
            Y  +P  + A +          +GR IAV     +    S+  H             + 
Sbjct: 337 DYGHHPVEISAVLKAA---RQASKGRVIAV----HQPHRYSRLSHHFDEFCACFNDADVV 389

Query: 400 NISHVWLSGFHV------LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            I+ V+ +G           L   L +  H   +  E  + L   +      GD+V
Sbjct: 390 GITDVYAAGEEPIPGADRDGLVAGLIQHGHRHAYAVEDAEALTQLVLREARPGDMV 445


>gi|330828046|ref|YP_004390998.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
 gi|328803182|gb|AEB48381.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas veronii B565]
          Length = 484

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 151/412 (36%), Gaps = 36/412 (8%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKAT 109
            H F+ H+ +   GA +VVV+T +      L +     +  V  A   LA   R R    
Sbjct: 65  AHIFVGHSAEHVEGASVVVVSTAIKQDNPELLAARELRIPVVRRA-EMLAELMRFRHG-- 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IAI G+ GKTTT  ++    +   +    +     +               + I E   
Sbjct: 122 -IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNS---AGTNARLGSSRYLIAEADE 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      ++P ++++T I   H+  +     ++ +   E    L   G   +  D
Sbjct: 178 SDASFLH-----LQPMVSIVTNIEADHMDTYGGDFSKLKATFIEFLHNLPFYGLAVVCID 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHG 287
           D     +  +     +    ++G S +AD Q+  + Q +  S   V+ +      V  + 
Sbjct: 233 DPVIRGMLPEIARPTL----TYGLSDDADVQVLDFVQTTNHSCFRVRRKEAGELLVTLNL 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N    + + +      +  I AL+ F     R ++Y          ++ + Y 
Sbjct: 289 PGIHNALNAAAAIAVATEDGVSDEAIISALAKFEGVGRRFQQYGEFETGRGKAMLVDDYG 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HV 404
            +P+ +K  I+      P        V+         ++  + D A+VLS  ++     V
Sbjct: 349 HHPSEVKVTINAARAGWPEK----RLVMVFQPHRYTRTRDLYEDFADVLSKVDVLVMLEV 404

Query: 405 WLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
           + +G          AL  ++    ++   +  T D +   +   + +GD+V+
Sbjct: 405 YAAGEEPIPGADGRALCRSIRSRGNLEPIFVATPDDVPAVLADLIGEGDLVL 456


>gi|168486808|ref|ZP_02711316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570252|gb|EDT90780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1087-00]
          Length = 450

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D +  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDKNTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLASKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|323497896|ref|ZP_08102905.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
 gi|323316941|gb|EGA69943.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio sinaloensis DSM
           21326]
          Length = 486

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 131/393 (33%), Gaps = 42/393 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +  +  IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   
Sbjct: 94  ENPEIVAARAARIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S        +                  +   G   + ++   E       ++P ++++T
Sbjct: 145 SEAGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   +  DD     L  K      + + +
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVVRELVPKI----SRQVIT 252

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G +++AD ++  ++Q   +  +  ++     +++  +  G H A N    + + +    
Sbjct: 253 YGFAEDADVRIDNYRQEGQQGKFTVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  + A++       R              ++ + Y  +P  +   I      + +G 
Sbjct: 313 ADEAILNAMAGTQGTGRRFDHLGEFDTGNGAVMLVDDYGHHPTEVDVTIQA----ARNGW 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDA 417
             +  V+         ++  + D A VL    +  + L            G    AL   
Sbjct: 369 EDKRLVMIFQPHRYSRTRDLYDDFANVLEQ--VDVLILLDVYSAGEKPIPGADGRALCRT 426

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +     +   +      L   + + L DGD+V+
Sbjct: 427 IRGRGKLDPIFVPDSQALPAVLANVLQDGDLVL 459


>gi|253576129|ref|ZP_04853461.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
 gi|251844472|gb|EES72488.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Paenibacillus sp.
           oral taxon 786 str. D14]
          Length = 476

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 107/359 (29%), Gaps = 36/359 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGI 164
           S A I+ ITGS GKTTT   +   L +             +IG+P    A    + ++ +
Sbjct: 112 SPAPILGITGSNGKTTTTTWIGNMLEAAGMR----PIVAGNIGIPLCEAAEEADEGNWLV 167

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T   RP +A +  +A  HL     +++  S+KA++F    +T    
Sbjct: 168 AELSSFQL----KGTRAFRPEVACLLNVAETHLDYHGTMDDYISSKAKLFANQRETDRAV 223

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----K 279
           LN+DD     L     A  I    +        +    +    E       +        
Sbjct: 224 LNWDDPVCRELVPYIKAKLIPFSMTEELQSEGVYVEPAYIPDVEDGLARRIMYRGADGEV 283

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            + +    I      N+   L  V+   A                G   R      +   
Sbjct: 284 RVIIDIADIALPGRFNIENALAAVAAAIAAGAAPEALAEPLRTFHGVEHRLEYVDEKQGV 343

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S   N  +   A+  L        G            G    S +++L  V    
Sbjct: 344 VYYNNSKATNSKATVMALGALQAPIVLIAG------------GLDRGSDYMELLPVFKE- 390

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYS---------ETMDGLFLFIQSSLVDGDVVVV 449
            +  V   G     +      +   H           +T+        S    GD+V++
Sbjct: 391 KVKAVVAMGQTKEKIARVAELAGLSHIVLVDTVDSAADTLRAALKEAASLAEPGDIVLL 449


>gi|224476285|ref|YP_002633891.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|254766056|sp|B9DPR3|MURD_STACT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222420892|emb|CAL27706.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 449

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 122/345 (35%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A IIA+TG+ GKTT   ++       ++T    G+      V   +A+     D+ I 
Sbjct: 109 SEAPIIAVTGTNGKTTVTSLIGDMFDKSRQTGLLSGNIGY---VASKVAQEAKPEDYLIT 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       RPHIA+IT I  AHL     +EE  +AK  I++   +   +  
Sbjct: 166 ELSSFQLLGIE----QYRPHIAIITNIYSAHLDYHGTLEEYRNAKRRIYKNQTEDDFLI- 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
               ++ +    ++  L  K  Y     +     ++          +  +          
Sbjct: 221 ---CNYNQRHLIETDGLKSKVYYFSTSQEVDGIYVKDGYIMLNGLRLIHKDD-------I 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L  +    +    +D  I  L+ F   + R    +   +       ++S
Sbjct: 271 VLPGEHNLENILAAVLAAVLGGVSIDAVIATLTSFSGIKHRL---QYIGSNKTNKYYNDS 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + + A++  +Q      G            G    +   +L   +   N+  + 
Sbjct: 328 KATNTLATQFALNSFNQPIIWLCG------------GLDRGNGFDELIPYMK--NVRVMI 373

Query: 406 LSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G     L      +  +V  +  +      +Q+ +   DVV++
Sbjct: 374 TFGETQDKLTKLGESQGKYVIRATDVKDAVDKVQNVIEPNDVVLL 418


>gi|81428361|ref|YP_395361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           sakei subsp. sakei 23K]
 gi|122063248|sp|Q38XM9|MURD_LACSS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78610003|emb|CAI55051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 454

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 128/381 (33%), Gaps = 42/381 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MVA      IPV           +LA      S+A  +++TGS GKTTT  ++ + L
Sbjct: 85  DNPMVAEAIKREIPVLTEP-------ELA---YEVSEADWVSVTGSNGKTTTTTLIALML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +  +       + N  I +     +     D  + EL    L      T  V+P +AV+T
Sbjct: 135 NYQRAQGHAYAAGNIGIPLSEVAQKATAK-DTMVTELSSFQLM----GTTTVKPKVAVLT 189

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL      E    AK  I +    +    +N+D      L  ++ A      +S 
Sbjct: 190 NIYEAHLDYHGTRENYVQAKMRIVQNQTASDYFVVNWDLPELRTLSQQTKAQ--VVPFSR 247

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +      ++  + C +   +             +  G H  +N L  L    ++    
Sbjct: 248 LGTSEEGAYVKDGQLCFKGEVIMPVTD-------INVPGDHNVENALAALAAAKLMGQSN 300

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  I+ L+ F   + R    +           ++S   N  + + A+    Q      G 
Sbjct: 301 EAIIEVLTTFTGVKHRM---QFVKEFAGRRFYNDSKATNMEATEVALKSFKQPIVLIAG- 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSE 428
                      G         L ++L   ++  + L G     L      +    +   +
Sbjct: 357 -----------GLDRGFTFEPLTDLL-KAHVKAIILYGETKQLLAQTAKEAGIETIEIVD 404

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        ++  +GDV+++
Sbjct: 405 QLTEAVPAAYAASQEGDVILL 425


>gi|171318508|ref|ZP_02907660.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
 gi|171096294|gb|EDT41200.1| UDP-N-acetylmuramate [Burkholderia ambifaria MEX-5]
          Length = 461

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 117/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +   V    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSQSERVGAVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIATARHVGVPPAQAAESLASFRNVKRRME----VRGSIDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P +++  I+ L         R +AVL    +  ++G +       LA      +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRQNSRILAVLEPRSNTMKLGVMKAQLPTSLA------DADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARAGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|82775495|ref|YP_401842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           dysenteriae Sd197]
 gi|309787236|ref|ZP_07681848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
 gi|118595691|sp|Q32K04|MURD_SHIDS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|81239643|gb|ABB60353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella
           dysenteriae Sd197]
 gi|308924814|gb|EFP70309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1617]
          Length = 438

 Score = 61.8 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G   + L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGVQLAALRPEV--AEKTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|239617755|ref|YP_002941077.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
 gi|239506586|gb|ACR80073.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kosmotoga olearia
           TBF 19.5.1]
          Length = 449

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 119/346 (34%), Gaps = 38/346 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I+ ITG+ GK+T   M+                   ++G P  ++ +    D  + E+  
Sbjct: 110 IVGITGTNGKSTVTTMVGHIAKKSGL----KTFIGGNLGTP-LISSINERFDVYVVEVSS 164

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L            H++ I  IA  HL     + E A AK +I E    +  I     +
Sbjct: 165 FQLTWFGKKEKY--FHLSSILNIAQDHLDYHRDMREYALAKLKIIELTSGSSIINSEILE 222

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +F +LL  K+              +   F  RK      +  +    +        +  G
Sbjct: 223 NFGDLLVDKTKK------------QIIPFSTRKDSFFCLKDGIMRLHKLSISLDSLNFPG 270

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H  +N  +TLG+   L   V  A++ L  +   + R ++          T I++S   N
Sbjct: 271 IHNQENAAITLGLAQFLGIHVHDALEKLQDYAFLDHRMQKCGQINGV---TFINDSKATN 327

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             ++  A+              I +L      G+  +  +  L + +S   + H+   G 
Sbjct: 328 AHAVINALENFDLEKV------IIILS-----GKEKREDYTPLIKKISR--VKHIIFLGD 374

Query: 410 HVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVK--SS 452
            + +L + L +    +    T+D            GD+V+     S
Sbjct: 375 SLKSLIERLKKKGITYDVVHTIDEALKKAVELSKAGDIVLFSPGGS 420


>gi|194434433|ref|ZP_03066695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|194417349|gb|EDX33456.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 1012]
 gi|332098109|gb|EGJ03082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella
           dysenteriae 155-74]
          Length = 438

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +        G+          L  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGGNVGVGGNIGL-----PALMLLDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|291457655|ref|ZP_06597045.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
 gi|291380708|gb|EFE88226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium breve DSM 20213]
          Length = 515

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/484 (11%), Positives = 124/484 (25%), Gaps = 55/484 (11%)

Query: 7   FHDLLQ---AIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
             +++Q        +           I+ D+R + P       KG  +   D++    Q 
Sbjct: 18  LREIIQGDCWTDNAADLAGADEPFTAITYDTRKVTPGTL-LCCKG-RFKA-DYLTDIDQA 74

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---------------- 107
           G    +  T+  A       P   V+D   A++ L+     R +                
Sbjct: 75  GLAAYMAETEYSAVTR---APGLIVNDARKAMSLLSAEFYGRPQDELTVIGITGTKGKTT 131

Query: 108 --ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               + A+  +          ++       TYA              + R   +      
Sbjct: 132 TAYFVQAVLNAYSGGRAALFSSVDNCLDGHTYAESDLTTPESMDAFRMMREAANNGMRYL 191

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAKAEIFEGLEKTGTI 223
            + +S         + +         I+P H+S       E+    K +I        T+
Sbjct: 192 VMEVSSQAYKVERVYGLTFDAGAFLNISPDHISAIEHPTFEDYLYCKRQITHNCR---TL 248

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D    +L++  + A  +        + +       +    + S   +  +      
Sbjct: 249 VLGADCDHADLIRQDAQASNVPVTTFALHAADGHGTHADFVALPDASSGYLFQEQGKAIG 308

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                             I       V    +A          G+            +  
Sbjct: 309 DFSLELEGEFNAANAAAAIALSRAVGVPAGSEAFRALEHVHIPGRMEHYESGNMVAYVD- 367

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
             Y  N  S K     ++        R + V G    +G+ +      + +    Y    
Sbjct: 368 --YAHNYVSTKTLAEFVTHKYADRNPRVVVVTGS---VGDKAVDRREGIIKGAQDYA-DR 421

Query: 404 VWLSGFH-----VLALKDALPR---------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L+        ++ +   +            I +  ++ ++       +      +++V
Sbjct: 422 IILTAEDTVHERMIDILHEMQGYITNPRVVSDIELDRAKAIEKAVEDAHAHADRLTILLV 481

Query: 450 --KS 451
             K 
Sbjct: 482 IGKG 485


>gi|315226730|ref|ZP_07868518.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
 gi|315120862|gb|EFT83994.1| UDP-N-acetylmuramyl-tripeptide synthetase [Parascardovia
           denticolens DSM 10105]
          Length = 549

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/487 (14%), Positives = 135/487 (27%), Gaps = 58/487 (11%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+++       +     + ++ DSR+I         KG  +    ++  A   G    V 
Sbjct: 40  LESLGSQLGKDLSSIVFSNLTYDSRTIDSASLLVC-KG-RFH-SSYLDQADALGLPCYVA 96

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTI 128
             D  ++  +L      V DV  AL  L+ A      S+  ++ ITG+ GKTTT      
Sbjct: 97  QEDFSSATKALG---IIVTDVRQALALLSAAFYGDPASQLKVVGITGTKGKTTTAYFTHA 153

Query: 129 A-------------LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---LGMSHL 172
                                       N      L L RM         E   + +S  
Sbjct: 154 ILSAYSGGKAALLSSVDNCVDGTTFTESNLTTPESLDLYRMMRQAVDAGMEYLVMEVSSQ 213

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                    +R  +     I+P H+S       E+    K +I    +           S
Sbjct: 214 AYKVQRVFGLRMAVGAFINISPDHISPIEHPTFEDYFYCKRQIAANSDNLVMNATMAHAS 273

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKW--------------KQCSEQSWMEVQL 276
                     A         G+S +A  +  +                      +     
Sbjct: 274 LVAEDARAHGAGLSAFRLVQGESGSAHHEEAEDSRLASLPTVTASPLDPDPTLGFRISDG 333

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QG S +      G     N    + IV  L  D+     A ++   ++          + 
Sbjct: 334 QGFSKDFRLSIAGDFNYANAAAAIAIVKSLGMDLTDPAIAQALEAMEKVTISGRMETFSS 393

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              +L    Y  N  S  A +  + +     + R I V G     G  +     ++ +  
Sbjct: 394 PQGSLAVVDYAHNGVSTTALLDYVDKAYGKMDPRIILVTGSA---GNKAYDRRQEIVQAA 450

Query: 397 SLYNISHVWLSG----FHVLALKDALPRSI------HVHYSET---MDGLFLFIQSSLVD 443
                  ++         +  +   + +++      H    +    ++           +
Sbjct: 451 QDRIARFIFTEEDTDTEPMEEICQQMDQAVTNPQVEHGIVLDRTHALEEAVRDAARHQEE 510

Query: 444 G--DVVV 448
           G   V++
Sbjct: 511 GGMTVIL 517


>gi|218289897|ref|ZP_03494087.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240037|gb|EED07223.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 458

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 126/423 (29%), Gaps = 64/423 (15%)

Query: 69  VVNTDMVASIGSLSIPV-------------FGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +V         S  IP                V DV     ++A     R    I AITG
Sbjct: 73  LVTHPWQFVAKSPGIPYHQAFIAELIKASHVIVTDV-----EIAYWLEER---PIYAITG 124

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GKTTT  ++   L +             +IG P+         D  + E+    L   
Sbjct: 125 SNGKTTTTTLVGEMLKASGYH----PIVAGNIGTPVCDVVDQPG-DLLVLEVSSFQL--- 176

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
              TH   P  A +    PAHL      E    AK ++F          LN+D     L+
Sbjct: 177 -EGTHTFHPRGAALLNFYPAHLDYHGTYEAYQQAKWKLFANQTPDDVAILNWDQ---ALV 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           + ++  L  +      +    D    +     + + + V+   ++  +    +      N
Sbjct: 233 RDRAGELAARVRGFSLEGAPFD----EGVGVIDGALVAVRGGERTPILPVDQVALPGRHN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +       ++  A          V    +G   R             ++S   NP + + 
Sbjct: 289 LQNAAAAAALALAAGAHVEAVARVLATFQGVEHRLEFVREVAGVRYYNDSKATNPDAARQ 348

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+    +      G     +     + ++S               +    L G     L+
Sbjct: 349 ALKSFERDVVWIAGGLDRGISFDPLLPDISGR-------------VRAAVLLGETKEKLR 395

Query: 416 DALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           + L R+      ++ TM+            GDVV++    +S             F   +
Sbjct: 396 EVLARAGVSTCVFASTMEEAVREASRIAEPGDVVLLSPACASWDMFPSYEVRGSMFKEAV 455

Query: 462 NLL 464
           + L
Sbjct: 456 HRL 458


>gi|120609516|ref|YP_969194.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
 gi|166222947|sp|A1TKD2|MURC_ACIAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120587980|gb|ABM31420.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax citrulli
           AAC00-1]
          Length = 475

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 84/439 (19%), Positives = 146/439 (33%), Gaps = 41/439 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH      ++ GA  VV +T    D    I +    +  V   L  L +L    R     
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQSDNPEVIAARERKIPVVPRALM-LAELMRLKRG---- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++T  L+        +     +            +   G  E  
Sbjct: 108 --IAIAGTHGKTTTTSLVTSVLAEAGLDPTFVIGGRLN--------SAGANAKLGQGEYI 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNY 227
           +    E       + P +AV+T I   H+  +        +    F   +   GT  L  
Sbjct: 158 VVEADESDASFLNLLPVMAVVTNIDADHMETYGHDFGRLKSAFVDFLHRMPFYGTAILCT 217

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+     +            +S      A        +   +      +    ++VV + 
Sbjct: 218 DNPAIREILPDVTCPVTSYGFSEDAQVRAVDVRADAGRMRFRVQRRNGVTLPDLDVVLNL 277

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESY 346
            G H   N L  + +   L    +  ++AL+ F     R +RY     QG  T    E Y
Sbjct: 278 AGEHNVLNALSAIAVAVELNIPDEALLRALAQFKGVGRRFQRYGELPAQGGGTFTLIEDY 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISH 403
             +P  M A ++      P        VL         ++    D   +        ++ 
Sbjct: 338 GHHPVEMTATLAAARGAFPGR----RLVLAFQPHRYSRTRDCFEDFVKVMGSADAVLLTE 393

Query: 404 VWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V+ +G   +   D   L R++ V       + + +  L   I  +   GDVV+   + S 
Sbjct: 394 VYAAGEAPIVAADGRSLARAVRVAGQVEPVFVDDIGELPRRIADNARGGDVVLCMGAGSI 453

Query: 456 GF--YRLINLLLEEFPAIQ 472
           G    +++ +L  + PA+Q
Sbjct: 454 GAVPAKVVEMLRTDVPAMQ 472


>gi|332974212|gb|EGK11145.1| UDP-N-acetylmuramate--L-alanine ligase [Kingella kingae ATCC 23330]
          Length = 468

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 85/423 (20%), Positives = 140/423 (33%), Gaps = 43/423 (10%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T +      +       IPV         +  LA   RL+     IAI G+ 
Sbjct: 64  GAEVVVTSTAIAHENPEVQAALAQHIPVI----PRAMM--LAELMRLKDG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +    L +       +                    ++ + E   S       
Sbjct: 115 GKTTTTSLTASILGAAGLDPTFVIGGKL---TAAGTNAKLGKGEYLVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            +    +   G  FL  D      + 
Sbjct: 167 SFLYLSPVITVITNIDEDHMDTYGQDVNRLHQAFIDFVHRMPFYGKAFLCIDSEHVRTIL 226

Query: 237 AKSHAL-GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
           +K         I +      A        Q         +   +S +V  +  G H   N
Sbjct: 227 SKIKKPFATYAIDNDQADIYATNVQTNGAQMQFTVNFRHESSLQSFDVTLNLPGRHNVLN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMK 354
            L ++G+     A V    + L+ F     R + Y   AL QG   L+ + Y  +P  M 
Sbjct: 287 ALASIGVALECKAPVAAIQQGLANFAGVGRRFQSYGEIALPQGGKALVIDDYGHHPVEMA 346

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF-- 409
           A I+      P+       VL         ++       +VLS  +   ++ V+ +G   
Sbjct: 347 ATIAATRGAYPNN----RLVLAFQPHRYTRTKDLFYQFVDVLSTADRVVLTEVYAAGEAP 402

Query: 410 ----HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               +  +L +A+     V   Y   ++ L   + S L DGDVV+   + S    R    
Sbjct: 403 IPDANAHSLANAVRARGLVEPIYCADINALPSILLSVLKDGDVVLTMGAGSI--NRTAQA 460

Query: 464 LLE 466
           L++
Sbjct: 461 LVD 463


>gi|116334052|ref|YP_795579.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis ATCC 367]
 gi|116099399|gb|ABJ64548.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           brevis ATCC 367]
          Length = 474

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 116/370 (31%), Gaps = 46/370 (12%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           +IA+TGS GKTTT  M+   +       A    Y  +IG+P +   +     D  + E+ 
Sbjct: 129 LIAVTGSNGKTTTTTMIQKMVD--HDRRAGKAVYAGNIGIPASRVAQAVTADDTLVLEVS 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T    PHIAV+T I   HL      E   +AK +I           +N+D
Sbjct: 187 SFML----VGTTTFHPHIAVLTNIFSNHLDYHKTRENYVAAKMKITANQTADDYFVVNFD 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L  +S A  +          + + + +               +  +        
Sbjct: 243 SPELRELSEQSAAQVVP--------FSREARSQAGAYELNGDLYFKDEKLMAASD-IKVP 293

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L  + +  I        +  L  F     R    +  L        ++S   
Sbjct: 294 GDHNVENALAAIAVAKIKGVSTAAIVAVLRSFGGVRHRT---QYVLEADGRQYYNDSKAT 350

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +  + + A+   +       G            G         L   L   ++  V L G
Sbjct: 351 DMEATEMALKGFTAPVVLIAG------------GLDRGYTFEKLVPSL-KAHVKAVVLVG 397

Query: 409 FHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
                L+DA  ++    +  SE ++            GD++++    +S           
Sbjct: 398 QTAKLLEDAAKKAGIQTIRLSENVETAVPTAYELSDAGDIILLSPANASWDQYPNFEVRG 457

Query: 455 CGFYRLINLL 464
             F + +  L
Sbjct: 458 DRFIKAVEQL 467


>gi|330955662|gb|EGH55922.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae Cit 7]
          Length = 72

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            +S ++  G  +     A     H ++  +   L   + +       +++K S S     
Sbjct: 2   KVSALYAVGPLMTHAVSAF--GEHAYHFASQAELIAALGAEQNPDTTLLIKGSRSAAMEH 59

Query: 460 LINLL 464
           ++  L
Sbjct: 60  VVAAL 64


>gi|297191289|ref|ZP_06908687.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718424|gb|EDY62332.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 464

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 148/423 (34%), Gaps = 46/423 (10%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L      S+PV    D   AL
Sbjct: 49  ALRALGVTVHIGH--AAEHLADDATSVVVSSAIRADNPELVRAAELSVPVVHRSD---AL 103

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L    R       IA+ G+ GKTTT  ML +AL+ +    +     +           
Sbjct: 104 ASLMTGLRS------IAVAGTHGKTTTTSMLAVALTELGLDPSYAIGGDLDG---PGTNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D D  + E   S             P +A++  +   H +N++ ++EI  +      
Sbjct: 155 RHGDGDIFVAEADES-----DRSFQKYDPEVAIVLNVELDHHANYASMDEIYESFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D +    L AK        I ++G+S+ AD ++ K       S + V 
Sbjct: 210 KIVPGGTLVISADQAGAVELTAKVRDRSSVKIVTYGESEAADVRVHKITPRGLTSEVTVL 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L     L         A+  +   + R +       
Sbjct: 270 LDGRLLTFTVSVPGRHYALNAVAALAAGVALGIPAHNLASAIGAYTGVKRRLQ----LKG 325

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +     +     G R+ V+     +   +Q    ++ + 
Sbjct: 326 EAAGVQVIDSYAHHPTEMTADLEA---MRGAAAGSRLLVVFQPH-LFSRTQELGTEMGQA 381

Query: 396 LSLYNISHVWLS---------GFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V            G     + DA       V        +   +      GD
Sbjct: 382 LALADASVVLDIYPAREDPIPGITSGLITDAARAAGADVTAVSDKAAVPEVVAGMAKPGD 441

Query: 446 VVV 448
           +V+
Sbjct: 442 LVL 444


>gi|148265987|ref|YP_001232693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
 gi|189082910|sp|A5G8K2|MURD_GEOUR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146399487|gb|ABQ28120.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           uraniireducens Rf4]
          Length = 453

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 89/289 (30%), Gaps = 26/289 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L          RP +AV+  I   HL  ++  +E   AK  IFE     
Sbjct: 158 DRVVVELSSFQL----EGIIDFRPQVAVLLNITEDHLDRYATYQEYIDAKLRIFENQTSA 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD        K  A  + T      ++   ++        E        +   
Sbjct: 214 DYAVLNMDDPLVAAYAGKMKARVVPTSQRQELAQGIFYRNGSIVYRWEG------REELF 267

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N++  L    ++  D   A+ AL  F     R +  R         
Sbjct: 268 ATASFRLKGVHNIDNIMAALASTLLMGCDAGQALAALEAFAGLPHRMEFVREVNGVA--- 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S+  ++           G            G+     +  LA ++    
Sbjct: 325 WYEDSKGTNVGSVVKSLESFDSGITLIAG------------GKDKGGEYTPLAGLVKER- 371

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + H+ L G     + +AL      H ++T++            G VV+ 
Sbjct: 372 VGHLILIGEAKERMCNALGSLTDTHLADTLEDAVALAHRLTSPGGVVLF 420


>gi|309776032|ref|ZP_07671024.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916314|gb|EFP62062.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 437

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 122/385 (31%), Gaps = 43/385 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             VV    +       +P     V+  +  L ++ +  R        AITG+ GKTT   
Sbjct: 64  AFVVKNPGIKYT----VPFVRYFVEHKVKILTEVEIGYRYAKGFHYGAITGTNGKTTITT 119

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML   L      Y        +IG PL+   +  + +     L +S+            P
Sbjct: 120 MLYEMLK-----YNKKAIVAGNIGWPLSELALKYEAEEKDVALELSNF--QLLGIEHFAP 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            ++V+  +AP HL     +E    +K  I++   K      N DD+             I
Sbjct: 173 SVSVVCNLAPDHLDYMPSVESYYESKMRIYKNCTKDDWFLRNVDDATVLQYAQNIPCTVI 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               +           +      +   + ++      E   H +G +   N ++   +  
Sbjct: 233 DFSLT----------RQDVDLYRKDGAVYLRDILLFEEKSFHVVGDYNLSNAMIAACMAY 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L   V    KA++ F P E R         +      ++S   N  ++ AA+S      
Sbjct: 283 KLGVSVRDIQKAIASFQPVEHRL---EYIGEKNGVKFYNDSKATNTHAVTAALSSFES-- 337

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
                  I +L    + G          A       +      G      ++      HV
Sbjct: 338 ------NIILLAGGHDKGISFDDLRQYDAR------VKLCVAFGETGPQFQEIFS---HV 382

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
           H  ETM        ++  + D++++
Sbjct: 383 HVVETMQEALKEAIANSKEQDIILL 407


>gi|315612789|ref|ZP_07887700.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
 gi|315314899|gb|EFU62940.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           sanguinis ATCC 49296]
          Length = 450

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 77/389 (19%), Positives = 137/389 (35%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLASKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAASEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D  T  + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQTIKETLSSFGGVKHRL---QFVDEIQGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|295677713|ref|YP_003606237.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
 gi|295437556|gb|ADG16726.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1002]
          Length = 464

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 121/369 (32%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   + + G +  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRLGRVVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     + Q  +     ++ +   +   +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWEIQPAEQGVPVDERFAVYRNGERVGVVDWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A K+LS F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHIGVPPAQAAKSLSSFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAI---ETTVAGLRARVGRDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLDGKAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 448 GGVHQKLLD 456


>gi|261367771|ref|ZP_05980654.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
 gi|282570568|gb|EFB76103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Subdoligranulum
           variabile DSM 15176]
          Length = 465

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 114/353 (32%), Gaps = 35/353 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   IIA+TGS GKTTT  +++  + +  +     G+    + +P      P  V 
Sbjct: 111 FFEFCPCEIIAVTGSDGKTTTTTLISKMMEAAGRKVFLGGNIGAAL-LPQLADVTPEAV- 168

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +R       P +AV+T + P HL +   ++E   AK  I        
Sbjct: 169 -AVVELSSFQLISMRRS-----PKVAVVTNVTPNHLDHHKDMQEYIDAKRNILLWQVPPC 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L Y++     +++      +           A  +      C  ++     +    +
Sbjct: 223 RAVLGYENEISRSMQSDCKGEQVWFTRLHETDNGAFLRAEDDTLCYAENGTVTPV----V 278

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +        L+           V+   +  S F   E R             T 
Sbjct: 279 ARSEVKLRGLHNVENLLAAIAAVWGRVPVEAMRQVASTFTGVEHRI---EPVRTLDGVTY 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    A +    Q      G            G   +  +  LA  + L ++
Sbjct: 336 YNDSIASSPTRTIAGLRSFDQKIILIAG------------GYDKKIPYEPLAPEI-LAHV 382

Query: 402 SHVWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDGDVV 447
             + L G     ++ A+          + + +++ M       +++ V GDVV
Sbjct: 383 KTLVLMGATAPRIEKAVREHPDFPNSDLKIVHADNMQDAVEKARAAAVPGDVV 435


>gi|170695338|ref|ZP_02886484.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
 gi|170139738|gb|EDT07920.1| UDP-N-acetylmuramate [Burkholderia graminis C4D1M]
          Length = 464

 Score = 61.8 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTTSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   + + G +  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     +    +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWETLPAEDGVPVDERFAVYHNAERVGVVEWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A K+L+ F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAAKSLASFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +          +L     +   S +  + + +     SL +   V
Sbjct: 336 HHPTAI---ETTVAGLRARVGRDNTRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL     +    + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLGANAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 448 GGVHQKLLDALSA 460


>gi|91776623|ref|YP_546379.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
 gi|118595665|sp|Q1GYZ9|MURD_METFK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91710610|gb|ABE50538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacillus
           flagellatus KT]
          Length = 453

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 137/399 (34%), Gaps = 45/399 (11%)

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATII 111
           F   A ++ A L+V +  +  +   +       V  V DV       +        A +I
Sbjct: 61  FTAAAFKE-AELIVASPGVPVAEPQVQAAIERGVPVVGDVELFAQARSAH------AKVI 113

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+T   ++     +             +IG+P+    +   VD  + EL    
Sbjct: 114 AITGANGKSTVTTLVGEICKAAGF----KTVVAGNIGLPVLDV-INDAVDVYVLELSSFQ 168

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L      T+ +    A +  I+  H+  ++ ++  A+AKA IF           +     
Sbjct: 169 L----ETTYSLAADAATVLNISADHMDRYADMQAYANAKARIFTRAGLQVLNADDAW--- 221

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                ++  A       +FG       Q       + ++W+    +        +  G H
Sbjct: 222 -----SRGMAAEGVAQLTFGLDAPRSAQDFGLLHDAGEAWLARGQRKLMPVADLNITGLH 276

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N L  L + ++L  D   A++AL  F     R +         F+     +      
Sbjct: 277 NAANALAALALCTVLDIDEVVALQALRDFKGLPHRVQWVADIDGVSFYDDSKGTNVGATV 336

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +    ++    +   G+G+           G+   +    +A+         V L G   
Sbjct: 337 AALHGLNRKLVLIAGGDGK-----------GQDFAALRAPVAKHARA-----VVLIGRDA 380

Query: 412 LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + DAL    + + Y +T++   +   +    GD V++
Sbjct: 381 GVIADALQESGVLLEYGDTLEEAVVKAFNLADRGDAVLL 419


>gi|15799772|ref|NP_285784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 EDL933]
 gi|15829346|ref|NP_308119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. Sakai]
 gi|168751402|ref|ZP_02776424.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755696|ref|ZP_02780703.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168764033|ref|ZP_02789040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168771312|ref|ZP_02796319.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776932|ref|ZP_02801939.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781973|ref|ZP_02806980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168801515|ref|ZP_02826522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|195939304|ref|ZP_03084686.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. EC4024]
 gi|208807723|ref|ZP_03250060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812067|ref|ZP_03253396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818888|ref|ZP_03259208.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398858|ref|YP_002268696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217325428|ref|ZP_03441512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791225|ref|YP_003076062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. TW14359]
 gi|291280913|ref|YP_003497731.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|30316080|sp|Q8X9Y9|MURD_ECO57 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12512791|gb|AAG54392.1|AE005185_9 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359548|dbj|BAB33515.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767768|gb|EDU31612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014554|gb|EDU52676.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000408|gb|EDU69394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357000|gb|EDU75419.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189359908|gb|EDU78327.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189365875|gb|EDU84291.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189376376|gb|EDU94792.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC508]
 gi|208727524|gb|EDZ77125.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208733344|gb|EDZ82031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739011|gb|EDZ86693.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160258|gb|ACI37691.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209746564|gb|ACI71589.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746566|gb|ACI71590.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746568|gb|ACI71591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746570|gb|ACI71592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|209746572|gb|ACI71593.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Escherichia coli]
 gi|217321649|gb|EEC30073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590625|gb|ACT69986.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Escherichia coli
           O157:H7 str. TW14359]
 gi|290760786|gb|ADD54747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320190389|gb|EFW65039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320642127|gb|EFX11478.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. G5101]
 gi|320647490|gb|EFX16285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. 493-89]
 gi|320652824|gb|EFX21062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H- str. H 2687]
 gi|320658213|gb|EFX25942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
 gi|320663522|gb|EFX30806.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O55:H7 str. USDA 5905]
 gi|320668834|gb|EFX35629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Escherichia
           coli O157:H7 str. LSU-61]
 gi|326345192|gb|EGD68935.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1125]
 gi|326346954|gb|EGD70688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia coli
           O157:H7 str. 1044]
          Length = 438

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G   + L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGVQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|320007795|gb|ADW02645.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces flavogriseus ATCC
           33331]
          Length = 464

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/393 (17%), Positives = 132/393 (33%), Gaps = 35/393 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +     L IPV    D L +L               IA+ G+ GKTTT  M
Sbjct: 77  SAIRADNPELVRAAELDIPVVHRSDALASLMD---------GLRSIAVAGTHGKTTTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L +ALS +    +     +              D D  + E   S     ++      P 
Sbjct: 128 LAVALSELALDPSYAIGGDLEG---PGTNATHGDGDIFVAEADESDRSFQKYA-----PE 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +A++  +   H +N++ ++EI  +       +   GT+ +  D      L  +       
Sbjct: 180 VAIVLNVELDHHANYASMDEIYESFETFVGKVVPGGTLVVAADQPGAVELTRRVRERSSV 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + ++G+S+ AD ++ K       S + V L GK +       G H A N +  L     
Sbjct: 240 RVVTYGESEGADVRVHKVTPRGLTSEVTVVLNGKFLTFTVSVPGRHYAHNAVAALAAGVA 299

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L         A+  +   + R +       +     + +SY  +P  M A +  +   + 
Sbjct: 300 LGVPAHNLASAIGTYTGVKRRLQ----LKGEAAGVQVIDSYAHHPTEMAADLEAMRGAAS 355

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKD 416
                   ++     +   +Q    ++ + L+L + S V          L G     + D
Sbjct: 356 ES----RLLVVFQPHLFSRTQELGTEMGQALALADASLVLDIYPAREDPLPGVTSALIID 411

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           A       V        +   +      GD+V+
Sbjct: 412 AAKAAGADVTAVHDKAAVPAAVAGMAKPGDLVL 444


>gi|225860677|ref|YP_002742186.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298229802|ref|ZP_06963483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254818|ref|ZP_06978404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502480|ref|YP_003724420.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|254766062|sp|C1CQG4|MURD_STRZT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225728254|gb|ACO24105.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238075|gb|ADI69206.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae TCH8431/19A]
 gi|327390416|gb|EGE88757.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA04375]
 gi|332075981|gb|EGI86447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41301]
 gi|332203845|gb|EGJ17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47368]
          Length = 450

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D +  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIATDKNTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMAAADFLVLNFNQDLAKDLASKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|160891418|ref|ZP_02072421.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|317478449|ref|ZP_07937609.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
 gi|156858825|gb|EDO52256.1| hypothetical protein BACUNI_03868 [Bacteroides uniformis ATCC 8492]
 gi|316905338|gb|EFV27132.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacteroides sp.
           4_1_36]
          Length = 443

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 115/346 (33%), Gaps = 32/346 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ ITGS GKTTT  ++     S             +IG  L L       D+ + E
Sbjct: 100 DAKMVCITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGNSLALQVATEQHDYYVIE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   +++   AK  I +          
Sbjct: 156 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQKYVDAKFRITQNQTPEDAFIF 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K         ++  K   A   +   +    +       Q        
Sbjct: 212 WNDDPIIKRELDKHGLRAHLYPFAAVKEDGAIAYVEDGEVEINEPIAFNMEQE-----EL 266

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R             + I++S
Sbjct: 267 ALHGTHNLYNSLAAGISANLAGIRKEYIRKALSDFKGVEHRL---EKVATVRGVSFINDS 323

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++       G+ + +LG     G+   + + ++ +++     + V+
Sbjct: 324 KATNVNSCWYALQSMT-------GKTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
           L G H   L     R  + V   +T M             G+ V++
Sbjct: 372 L-GLHNEKLHAFFDRLGLPVADVQTGMQDAVEAAFKLAKKGETVLL 416


>gi|225166180|ref|ZP_03727897.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
 gi|224799574|gb|EEG18086.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl- D-alanyl ligase
           [Opitutaceae bacterium TAV2]
          Length = 207

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 62/206 (30%), Gaps = 34/206 (16%)

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +   MA+N  + +     L          L+ + P   RG       +     L
Sbjct: 8   TFTLPRVTDGMARNAALAIRAALHLGVSAAEIQTRLARWTPPPLRG---EWRTDTHNRRL 64

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--Y 399
             + YNANPASM  A+   +  +   +  R+ ++G M E+G  S   H DL   L+    
Sbjct: 65  YLDCYNANPASMLDALETFAATATPPDAPRLYIIGCMEELGPESARHHADLGRALAALLR 124

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHY----SETMDGLFLFIQSSLVDGDV--------- 446
               V   G H   +  A               T++         L   D          
Sbjct: 125 ADDEVIAIGPHAEHVARASRPPDDAQRRPVKCSTLN------VKCLTFSDTPAALASPAT 178

Query: 447 ----------VVVKSSNSCGFYRLIN 462
                     + VK S      RL+ 
Sbjct: 179 AALLASHCGPMFVKGSRRHALERLVE 204


>gi|332184313|gb|AEE26567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella cf.
           novicida 3523]
          Length = 417

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 129/393 (32%), Gaps = 69/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ I E+    +     L + VR  +  +  ++P HL  +   EE 
Sbjct: 132 IGTP-ALNKIGEKFDYCIVEVSSFQID----LFNCVRFDLGCVINVSPDHLDRYQNFEEY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
             +K                        L   S+   +  +++ G     ++Q+ +    
Sbjct: 187 KQSKLN----------------------LAKFSNDFFVYDVHNNGIKYAGEYQIIRGAIY 224

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                +                  +   N+   + +++IL        +A+      +G 
Sbjct: 225 RGSIKLLD----------ITETNLYGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 274

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 275 EHRCKIVKKVNGITYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 329

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V+L G     ++  +           M   F          ++
Sbjct: 330 -----MIKSLDKY-VKYVYLYGADKEYIESYIKSYCKYQLCNNMKQAFELASQKAEANEI 383

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           +++    +S             F  L+  L ++
Sbjct: 384 ILLSPACASFDEFTGYVQRGEVFQSLVAQLEQK 416


>gi|227524045|ref|ZP_03954094.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
 gi|227088784|gb|EEI24096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           hilgardii ATCC 8290]
          Length = 460

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 118/378 (31%), Gaps = 46/378 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIF 165
            A II +TGS GKTTT  M+T  L+  +K          +IGV  T   +    D   + 
Sbjct: 111 DAEIIGVTGSNGKTTTVTMITKILNEERKKGH--AYAAGNIGVSATETALKSTADDTIVM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I+ L     PH+AV+T I   HL      +   +AK  I           +
Sbjct: 169 ELSSFMLLGIKKLH----PHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFFVV 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N+D   +  L  +S A  +    +                  +   +    +        
Sbjct: 225 NFDSDEWRQLSKRSRAQVVPFARTS---------EIDRGAYEKNGKLYYNDEFIMNADDI 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N L  +    IL          L  F     R    +  L        ++S
Sbjct: 276 KVPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRV---QFVLEADGRKFYNDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              +  +        +QI+  G    I +L    + G                 ++    
Sbjct: 333 KATDIEA--------TQIALEGFDHPIVLLAGGLDRGYTFDKMVPQF-----KQHVKAAV 379

Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
           L G     L+++L ++   ++   + +D            GD++++    +S        
Sbjct: 380 LFGQTADLLEESLQKASVKNITKVDNLDEAVPAAYHYSDSGDIILLSPANASWDQFKTFE 439

Query: 453 -NSCGFYRLINLLLEEFP 469
                F + +  L  +  
Sbjct: 440 QRGDEFIKDVEKLTHKQE 457


>gi|227512223|ref|ZP_03942272.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
 gi|227084617|gb|EEI19929.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           buchneri ATCC 11577]
          Length = 460

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 118/378 (31%), Gaps = 46/378 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIF 165
            A II +TGS GKTTT  M+T  L+  +K          +IGV  T   +    D   + 
Sbjct: 111 DAEIIGVTGSNGKTTTVTMITKILNEERKKGH--AYAAGNIGVSATETALKSTADDTIVM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I+ L     PH+AV+T I   HL      +   +AK  I           +
Sbjct: 169 ELSSFMLLGIKKLH----PHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFFVV 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N+D   +  L  +S A  +    +                  +   +    +        
Sbjct: 225 NFDSDEWRQLSKRSRAQVVPFARTS---------EIDRGAYEKNGKLYYNDEFIMNADDI 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N L  +    IL          L  F     R    +  L        ++S
Sbjct: 276 KVPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRV---QFVLEADGRKFYNDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              +  +        +QI+  G    I +L    + G                 ++    
Sbjct: 333 KATDIEA--------TQIALEGFDHPIVLLAGGLDRGYTFDKMVPQF-----KQHVKAAV 379

Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
           L G     L+++L ++   ++   + +D            GD++++    +S        
Sbjct: 380 LFGQTADLLEESLQKAGVKNITKVDNLDEAVPAAYHYSDSGDIILLSPANASWDQFKTFE 439

Query: 453 -NSCGFYRLINLLLEEFP 469
                F + +  L  +  
Sbjct: 440 QRGDEFIKDVEKLTHKQE 457


>gi|254463263|ref|ZP_05076679.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2083]
 gi|206679852|gb|EDZ44339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 466

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 115/400 (28%), Gaps = 47/400 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--ATIIAITG 115
            +++ +  +  +     PV          VD D+       A +          ++A+TG
Sbjct: 67  ALLITSPGIPHLYPTPNPVIKEALQMGVPVDNDISLFFRSFATSEWDNLDVTPRVVAVTG 126

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+TT  ++   L    +          +IG  +      +D +  + EL        
Sbjct: 127 SNGKSTTSALIHHVLEHANR----PTQLAGNIGRGVLDIDPAIDGEVVVLELSSYQTDLA 182

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE-- 233
           R LT    P +AV T ++P HL    G+    +AK  +F        I    +D      
Sbjct: 183 RALT----PDVAVFTNLSPDHLDRHQGMGGYFAAKRRLFAEGGPERAIIGIDEDEGLYLA 238

Query: 234 -LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
             +        +  I    K  +  + +   K    +     Q+    +  +    G H 
Sbjct: 239 GQMAEGPQDDRVIRISVERKLTDFGWAVFANKGFLSEYRKGRQIGSIDLRAIKGLPGAHN 298

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN      +   L           + +     R    +   +    T +++S   N  S
Sbjct: 299 HQNACCAYAVCRTLGLAPRVIEAGFASYPGLPHRS---QIVADVDGVTYVNDSKATNVDS 355

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---WLSGF 409
              A+    +I     G                     +            V   ++ G 
Sbjct: 356 AAKALGAFKKIRWICGG------------------LEKEGGVEALANAADEVLKAYVIGR 397

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                   L   +      +M+           +G+ V++
Sbjct: 398 EASRFAMQLA-GVKTEVCTSMEEAVARAMEDSSEGETVLL 436


>gi|186477373|ref|YP_001858843.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
 gi|184193832|gb|ACC71797.1| UDP-N-acetylmuramate [Burkholderia phymatum STM815]
          Length = 469

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTTSMLTWLLEDAGMN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGIGRVVSNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   + + A+     ++    FG          +     ++ +       +   V    
Sbjct: 222 REVALDRVLARGCWSEVER---FGVEGGWQALPAEDGVAVDERFAVYHNGERVGVVDWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N +  +     +      A K+LS F   + R +             + + + 
Sbjct: 279 QGEHNRMNAIAAIAAARHIGVPPAQAAKSLSTFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  ++ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIQTTVAGLRTRIGRTNTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVLA------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL            +D L   + ++   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGKDALGWNLAEALAPMGDKAQAFNEIDSLVKAVVAAAQPGDQVLV-MSNG-GF 446

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 447 GGVHQKLLDALSA 459


>gi|331083260|ref|ZP_08332373.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404341|gb|EGG83886.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 459

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 130/393 (33%), Gaps = 38/393 (9%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +       A      IP+          L ++    RL      IA+ G+ GKTTT 
Sbjct: 76  TAAIHEDNPEFACAKEKGIPMI----TRAELLGQIMKNYRLP-----IAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L   +              V   L  +  ++  G  E  ++   E         
Sbjct: 127 SMISHVLLEAEADPTIS--------VGGILPAIHGNIRVGNSETFITEACEYTNSFLSFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I++I  I   HL  F  +++I  +     E L   GT+ +N D    E +  K     
Sbjct: 179 PKISIILNIDADHLDFFKDLDDIRHSFRLFAEKLPADGTLIINGDIPNVEEITDKLPCEV 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           I    ++G  K AD+             S+  +              G H   N L  + 
Sbjct: 239 I----TYGLEKAADYTAANITFDETAHASFDCLHKGQCIGRFSLAVPGLHNVSNALSAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAA 356
           +   +  D+DT  + +  F   + R +                     +     A+    
Sbjct: 295 LGEKVGFDLDTVRRGILHFGGTDRRFQYKGKVAGVTIIDDYAHHPTEIAATLKTAANYPH 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +      PH   R  A+   M E  + L+ +  + LA++ +     ++   G     L 
Sbjct: 355 KTTWCVFQPHTYTRTKAL---MDEFADVLATAERVILADIYAARETDNL---GVSSSDLC 408

Query: 416 DAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           D +  R    +Y  T D +  F+  + ++GDV+
Sbjct: 409 DKINERGGKAYYFPTFDEIEAFLLENCINGDVL 441


>gi|294789540|ref|ZP_06754775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
 gi|294482477|gb|EFG30169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Simonsiella muelleri ATCC 29453]
          Length = 456

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 110/404 (27%), Gaps = 38/404 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+   +   +   S P +  ++VL              K  ++ + G+ GKTTT  ML  
Sbjct: 84  VIEAILNKGLPYTSGPQWLSENVLQ-------------KMWVLGVAGTHGKTTTASML-A 129

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHI 186
            +       A            ++      D  F + E                  RP  
Sbjct: 130 WVLEYAGYGAGFLIGGVPQNFSVSARLPQNDSAFFVIEADEYDTAFFDKRSKFVHYRPRT 189

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            ++  +   H   F  +  I +    +   +   G I  +           K        
Sbjct: 190 TILNNLEYDHADIFPDLAAIQTQFHHLIRTVPNQGLIIASGRAEAIHETIDKGC------ 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++  +        +  +   + S+       K   V    +G H   N L  +     +
Sbjct: 244 -WTPIEWFGNQAGWQIGEADKQGSFDVFFKGEKVGRVQWELLGEHNRLNALAVIAAARHV 302

Query: 307 TADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
              V  A  ALS F   + R +             F     +     A ++  +     I
Sbjct: 303 GVSVQAACDALSQFKNVKRRMEIKGVVNQITVYDDFAHHPTAIETTIAGLRQKVGNARII 362

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           +          LG M             L+  L   N    +  G          P    
Sbjct: 363 AVLEPRSNTMKLGTMK----------AALSGSLKEANAVFCYAGGVDWDVQAALEPLGDK 412

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +H  +  D     +      GD +++  SN  GF  +   LL +
Sbjct: 413 LHIGKQFDEFVNELAKFAQTGDHILI-MSNG-GFGGIHEKLLAK 454


>gi|323527382|ref|YP_004229535.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
 gi|323384384|gb|ADX56475.1| UDP-N-acetylmuramate [Burkholderia sp. CCGE1001]
          Length = 464

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 122/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    D  F + E   
Sbjct: 106 VLAVAGTHGKTTTSSMLTWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   + + G +  N 
Sbjct: 163 YDTAFFDKRSKFVHYRPKTAVLNNLEFDHADIFPDLAAIETQFHHLIRTVPRIGRVVTNG 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E +  +     ++    FG     + Q  +     ++ +       +   V    
Sbjct: 223 REDALERVLTRGCWSEVER---FGVQGGWETQPAEDGVPVDERFAVYHNAERVGVVEWQV 279

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 280 QGEHNRMNALAAIAAARHVGVPPAQAARSLASFRNVKRRME----VRGSVDGVTVYDDFA 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++   ++ L         R +AVL    +  ++G +       LA      +   V
Sbjct: 336 HHPTAIDTTVAGLRARVGRDNTRILAVLEPRSNTMKLGVMKAQLPGSLA------DADLV 389

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +D L   +  +   GD ++V  SN  GF
Sbjct: 390 FGYGAPSGRDALGWNLGEALAPLGAKAQAFDNLDALVKAVVHAARPGDQILV-MSNG-GF 447

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 448 GGVHQKLLDALSA 460


>gi|225568660|ref|ZP_03777685.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
 gi|225162588|gb|EEG75207.1| hypothetical protein CLOHYLEM_04738 [Clostridium hylemonae DSM
           15053]
          Length = 449

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 115/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  ++A+TG+ GKTTT  +L   + + K+    +G+  N   V         +    + E
Sbjct: 107 KGDVLAVTGTNGKTTTTSLLGEIMKNYKEEVYVVGNIGNPYTVAAGKMS---EHAVAVAE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          RP ++ +  I P HL+    +E    AK  I     +     LN
Sbjct: 164 MSSFQL----ESIVSFRPAVSALLNITPDHLNRHHTMEAYIEAKKNIARNQTEEDWCILN 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           Y+D           A  +   +S  +       L   +                      
Sbjct: 220 YEDEVTREFGKNVRAQVLY--FSSRRKLERGIYLDDGRIIYRNPEEICIC----HVDELQ 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N++    + ++    VD   +++  F   E R         +      ++S 
Sbjct: 274 LPGTHNHENIMAAAAMAAVYGVPVDKIRESVKAFKGVEHRI---EFVTEKNGVVYYNDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +    I  +++ +    G            G    S + +  E      +  + L
Sbjct: 331 GTNPDAAIKGIQAMNRKTVLIGG------------GYDKDSSYTEWIESFD-GKVRKLIL 377

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
            G     +             +++T +   L        G+ V++    +S         
Sbjct: 378 LGATKEKIAKDAESCGFHDYVFADTFEEAVLMSAEIAGPGEAVLLSPACASWDMFPNYET 437

Query: 453 NSCGFYRLINLL 464
               F  ++N L
Sbjct: 438 RGDKFKEIVNSL 449


>gi|216263492|ref|ZP_03435487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
 gi|215980336|gb|EEC21157.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia afzelii
           ACA-1]
          Length = 449

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 137/451 (30%), Gaps = 77/451 (17%)

Query: 61  VQKGAGLVVVNTDMVASIG---------SLSIPVFG----VDDVLGA------------- 94
           ++ GA LV+ +    A +             I        V+D   A             
Sbjct: 28  LKHGAKLVITDLKSEAELALSIDSLRDFDDQIRYVLGKHDVNDFKKADIVVKNPSVRPNN 87

Query: 95  -LNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L  AL          G+    
Sbjct: 88  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS 147

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P +++IT +   H + +S  ++ 
Sbjct: 148 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYSNFDDY 200

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K++IF        I  +             +    K          ++F      Q 
Sbjct: 201 IIDKSKIFVNQTSGIVIIQD----------KAYYKYFSKFESKAKVILFSEFNPCNLDQD 250

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S         ++               L+   +   L  D++   + L  F   E R
Sbjct: 251 IFYSNKGEVYFNDNLIGSFFESQVVFMIPKLIAFFVAYYLNIDLNHMFQILKNFKGIEHR 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N       +++ +  P S   ++  L       +     ++G     G    
Sbjct: 311 LEFVKLVRNVM---FYNDTASTIPDSTVLSVKSLKT----NDNCINLIVG-----GTDKN 358

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGD 445
                 +++++L     + + G   + + + L +S I     +++ G   +       GD
Sbjct: 359 LDFSSFSKIINLVKA-WILIKGSATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGD 417

Query: 446 VVVVK-SS-----------NSCGFYRLINLL 464
           +V+   +S               F +L+++L
Sbjct: 418 IVLFSPASASFELFNNEFDRGLQFKKLVDML 448


>gi|154149379|ref|YP_001406492.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
 gi|153805388|gb|ABS52395.1| Mur ligase family protein [Campylobacter hominis ATCC BAA-381]
          Length = 479

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 113/345 (32%), Gaps = 33/345 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGI 164
               II IT S GKT+ K  L   L    K      S N   G+       +  D    I
Sbjct: 159 PDLLIIQITASFGKTSIKNFLFELLKDDFKVQKTPRSVNTLNGIIRDINENLSYDTKIYI 218

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + P I ++  I   H+  F  IE I + K E            
Sbjct: 219 AEAGARKNGDIKEITQFLNPQIVLVGEIGAQHIEYFKSIENIRATKLESLSSNR-----L 273

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +       LLK                +   D Q+  +    +   +E++   K    +
Sbjct: 274 KHAFLHSTTLLKENE------------TNTIYDKQIANFTANLDGIKLEMKSGEKIFAEI 321

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                   AQN+   + I   L  + +   K     H  E R ++           +ID+
Sbjct: 322 LG---DFNAQNLAACILIAKFLGINAEKIAKNAKNLHSVEHRLQKIMTNEKF----IIDD 374

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   M A+  ++           + +   + E    ++  +  L   ++      V
Sbjct: 375 SFNGNLKGMCASYDLVKNYKSRK----VIITPGIVE---GTKEMNEILGIKINEI-FDLV 426

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++G     +  A      + + +    +   + +     D+++ 
Sbjct: 427 MITGDLNAEILGAKIDPKKLIFIKDKSKMIEILGAETKADDLILF 471


>gi|111115413|ref|YP_710031.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
 gi|122956339|sp|Q0SMS3|MURD_BORAP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110890687|gb|ABH01855.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Borrelia afzelii
           PKo]
          Length = 451

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 137/451 (30%), Gaps = 77/451 (17%)

Query: 61  VQKGAGLVVVNTDMVASIG---------SLSIPVFG----VDDVLGA------------- 94
           ++ GA LV+ +    A +             I        V+D   A             
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLRDFDDQIRYVLGKHDVNDFKKADIVVKNPSVRPNN 89

Query: 95  -LNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQALKKKYPRVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P +++IT +   H + +S  ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYSNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K++IF        I  +             +    K          ++F      Q 
Sbjct: 203 IIDKSKIFVNQTSGIVIIQD----------KAYYKYFSKFESKAKVILFSEFNPCNLDQD 252

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S         ++               L+   +   L  D++   + L  F   E R
Sbjct: 253 IFYSNKGEVYFNDNLIGSFFESQVVFMIPKLIAFFVAYYLNIDLNHMFQILKNFKGIEHR 312

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +  +   N       +++ +  P S   ++  L       +     ++G     G    
Sbjct: 313 LEFVKLVRNVM---FYNDTASTIPDSTVLSVKSLKT----NDNCINLIVG-----GTDKN 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGD 445
                 +++++L     + + G   + + + L +S I     +++ G   +       GD
Sbjct: 361 LDFSSFSKIINLVKA-WILIKGSATVKIINVLEKSSIQYFVFDSLRGAVNYAFEISSPGD 419

Query: 446 VVVVK-SS-----------NSCGFYRLINLL 464
           +V+   +S               F +L+++L
Sbjct: 420 IVLFSPASASFELFNNEFDRGLQFKKLVDML 450


>gi|91791720|ref|YP_561371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
 gi|91713722|gb|ABE53648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           denitrificans OS217]
          Length = 440

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 132/409 (32%), Gaps = 60/409 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  V +   + I V G  DV      +A       K  +I ITGS GKTT   ++ 
Sbjct: 76  IAIDTPEVRAAMDMGIEVIG--DVELFARAIADK-----KPCVIGITGSNGKTTVTTLVY 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L +         +   +IG P     + +DVD+ + EL    L      T+ +    A
Sbjct: 129 EMLLAAGLKV----AVGGNIGTPALDL-LAMDVDYYVLELSSFQL----ETTYSLNCIAA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  +S +    +AK  +++          +      E +      LG+   
Sbjct: 180 TCLNISEDHMDRYSDLTAYRNAKLRLYDQSRFIMYNLDDELTYPHEPMNQNHFGLGVPDG 239

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            ++G                    +          +    IG H   N+L  + +V    
Sbjct: 240 DAWGL---------------GDGKIYHGDSDIINLIDVALIGSHNHGNLLAAMALVHACG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            + +  +     F     R         +   + I++S   N  +  AA+  LS      
Sbjct: 285 VEKEPMVTVAKTFSGLSHRC---ELVAVKQGVSYINDSKATNVGATVAALEGLSTHL--- 338

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G    + G     G+   +    L + L   N+  +   G     L    P +I V   
Sbjct: 339 -GEVYLIAG-----GDGKGADFRPLTQAL--SNVVQLITLGRDGHKLAKLKPGAIEV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            TM             GD+V++    +S             F +L+  L
Sbjct: 388 ATMAEAVAKAAEMAYSGDIVLLSPACASLDMYKNFMARGDDFRQLVEQL 436


>gi|119478635|ref|ZP_01618538.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
 gi|119448412|gb|EAW29663.1| UDP-N-acetylmuramate--L-alanine ligase [marine gamma
           proteobacterium HTCC2143]
          Length = 477

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 72/462 (15%), Positives = 146/462 (31%), Gaps = 59/462 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA-PQ-EAFFAIKGPHYDGHDFILHAVQKG 64
             ++L        G      V+ ++   R +       F         GH      +  G
Sbjct: 35  IAEVLLNTGYQISG--SDIQVSKVT---RRLQEKGITVFI--------GHR--ESNIS-G 78

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
             +VV +T +      +       IP+         +  LA   R R     IA+ G+ G
Sbjct: 79  VDVVVCSTAVKDDNPEILEAMAHRIPIV----PRAEM--LAELMRYRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++    +  +     +     +            +  F + E   S    +   
Sbjct: 130 KTTTTSLIASVFAEARLDPTFVIGGLLNS---AGTNAQLGESRFLVAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P ++V+T I   H++ +     ++     E    L   G   +  DD     L  
Sbjct: 185 ---LQPMVSVVTNIEADHMATYDGDFNKLKKTFVEFLHNLPFYGMAVMCIDDDVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                     Y F    +                ++   + K +++  +  G H   N  
Sbjct: 242 AV--GRATLTYGFSHDADFSIVDVNKLGLRTSFSVKRPGKHKQIDITINMPGDHNVLNAT 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + +    D +   + +  F     R + Y     +    L+ + Y  +P  ++A I
Sbjct: 300 AAIAVATDEGIDDEAIQRGIEKFEGVGRRFQVYGEFDIEEGSVLLVDDYGHHPTEVEATI 359

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLAL 414
           S   Q  P        V+         ++  + D   VLS  +   +  V+ +G   +  
Sbjct: 360 SAARQAWPDR----RLVMVYQPHRYTRTKDLYEDFVRVLSTVDSLLLLEVYSAGEEPIPG 415

Query: 415 KDALPRSIHV--------HYSETMDGLFLFIQSSLVDGDVVV 448
            D    S  +         + E ++ +   ++S +  GDVV+
Sbjct: 416 ADGRSLSRSIRSRGLIDPIFVEKIESIAEVLKSIVKPGDVVL 457


>gi|225011611|ref|ZP_03702049.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
 gi|225004114|gb|EEG42086.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Flavobacteria
           bacterium MS024-2A]
          Length = 445

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 96/333 (28%), Gaps = 39/333 (11%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IE 204
           +IG            D+ + E+    L  I        PHI+VIT I P HL  +S  +E
Sbjct: 138 NIGTSFARQVAQEQFDYYVLEISSFQLDNIHDFA----PHISVITNITPDHLDRYSYSLE 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               +K +I +   +      N DD   +   ++      K  Y F   +          
Sbjct: 194 NYIKSKFKIIQNQTQKDFFLFNADDPILKEAISEHKNKASKVPYGFEVKREGSTHENDHL 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                                   G H   N +    I S+L    DT  ++L+ F    
Sbjct: 254 I-----LKHRNKNTMIDTTQFTLTGRHNLLNAMAAATIGSLLDISKDTIRESLTHFKG-- 306

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R    L     + I++S   N  +   A+  +        G            G  
Sbjct: 307 -APHRMEKVLTIQRVSYINDSKATNVNATYFALESIDTPLIWIVG------------GVD 353

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVD 443
             + +  L  ++       +   G    ALK+   R   +   +++M             
Sbjct: 354 KGNDYTTLLPLI-RTKAKAIICLGEDNEALKNTFERVTDIFIETQSMSEAVKIAHKVAAP 412

Query: 444 GDVVVV---KSS---------NSCGFYRLINLL 464
            D V++    +S             F   +  L
Sbjct: 413 KDTVLLSPACASFDLFENYEDRGNQFKNAVRNL 445


>gi|262202914|ref|YP_003274122.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
 gi|262086261|gb|ACY22229.1| UDP-N-acetylmuramyl-tripeptide synthetase [Gordonia bronchialis DSM
           43247]
          Length = 556

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/488 (14%), Positives = 132/488 (27%), Gaps = 56/488 (11%)

Query: 14  IQGHS--IGIVPQ-GFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
                  IG       V G+++ ++ +   + F A+ G    G  F   AV  GA  ++ 
Sbjct: 39  TGARLDLIGGAESATEVTGVTLRAQEVRSGDLFAALPGSTTHGARFAADAVAAGATAILT 98

Query: 71  NTDMVAS-----IGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTK 123
           +    A          S+      +    L  ++            +I ITG+ GKTTT 
Sbjct: 99  DPAGRAELSRVLPPEASVVALVHPEPRTVLGGVSARIYGNPSQRLKLIGITGTSGKTTTS 158

Query: 124 EMLTIALSSIKKTYACIGSYNNH-IGVPLTL---------------ARMPVDVDFGIFEL 167
            M+  AL +   +   IG+      GV                     +   VD  + E+
Sbjct: 159 YMVEAALLAAGSSVGLIGTVETRIDGVAQPSSLTTPEAPTLQALLAVMLERGVDAVVMEV 218

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
             SH   +  +       +   T ++  HL     +     A A+  +           +
Sbjct: 219 -SSHALALGRV-DGSHFALGAFTNLSQDHLDFHPTMAAYFEAKAQLFVPSSPVHAVRSVI 276

Query: 226 NYDDSFFELLKA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             DD +   +    +  A           +     Q    +   +           +   
Sbjct: 277 CVDDEWGARMAELARPAARQSARQPVTVSTGGVPAQWHAAESVVDADGTSRTPITGTDGD 336

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +      N+   L  V++       A  A+         G+  R    Q F  L+D
Sbjct: 337 AELVVPLPGRYNVANALLAVAVADCAGVDAATAIGAIATVSVPGRLQRVDRGQPFLALVD 396

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++         A       +    GR   V+G     G    +    L    +      
Sbjct: 397 YAHKPGAVQAVLATLRAQAAARAEAGRVAIVIGA----GGDRDTAKRPLMGEAAARGAEF 452

Query: 404 VWLSG-----FHVLALKDAL-------------PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           V ++          A++  +               +  V                   GD
Sbjct: 453 VVVTDDNPRTEDPAAIRAEVLAGARAVGRADRPAGAEEVREVGGRAEAIATALHWARPGD 512

Query: 446 VVVV--KS 451
            V++  K 
Sbjct: 513 TVLIAGKG 520


>gi|51892169|ref|YP_074860.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Symbiobacterium thermophilum IAM 14863]
 gi|60390359|sp|Q67QM7|MURD_SYMTH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51855858|dbj|BAD40016.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Symbiobacterium
           thermophilum IAM 14863]
          Length = 455

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 119/379 (31%), Gaps = 44/379 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                +A +I +TGS GKTTT  ++   L +  +          +IG P +         
Sbjct: 104 VLDLCRAPVIGVTGSAGKTTTTTLIGEILRAAGR----ETYVGGNIGKPLIEQVEAIPSE 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        PHIAV+T ++P HL   + +EE   AK  IF      
Sbjct: 160 AVVVLELSSFQLQLVHRS-----PHIAVVTNVSPNHLDVHATMEEYVEAKKAIFRRQSPA 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD       A++ +  +           AD   R      E   +  +   ++
Sbjct: 215 DWLVLNADDPTVRAFAAEARSRVVLFSRR------ADPGGRDAAFVREDRVIWRRGGRET 268

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    I      N    L  V+              V     G   R           
Sbjct: 269 PILFLDEIRLPGLHNQENVLAAVAACFLAGAPLSAVREVVTQFTGVEHRIEPVRVLDGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   +PA   AA++ L        G            G         +A +++   
Sbjct: 329 WYNDSKATSPAEAVAALTTLPAPIVLIAG------------GSDKGIPFDPIAPLVAE-K 375

Query: 401 ISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
           +  + L G     +++A+ R      +  +  M       + +   GD V++    +S  
Sbjct: 376 VKTLILMGPTAPKIEEAVRRGGYAGPIRRAADMAEAVALAREAAAPGDTVLLSPACASFD 435

Query: 453 -------NSCGFYRLINLL 464
                      F  L+  L
Sbjct: 436 AYRNFEERGRHFKSLVEAL 454


>gi|39998159|ref|NP_954110.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sulfurreducens
           PCA]
 gi|48428299|sp|P61679|MURC_GEOSL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|39985105|gb|AAR36460.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens PCA]
          Length = 462

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 114/388 (29%), Gaps = 36/388 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V       IPV         +  LA   R++     IAI G+ GKTTT  M+   L
Sbjct: 77  DNPEVVEAKRRMIPVI----PRAEM--LAELMRMKYG---IAIAGTHGKTTTTSMVATVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +     +    L          F + E   S           + P IAV+T
Sbjct: 128 THGGIDPTIVIGGKLNT---LGTNAKLGQGQFLVAEADES-----DGSFLKLSPTIAVVT 179

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL  +  GIE+I     +    +   G   L  +D     +  +          +
Sbjct: 180 NIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK----RFVT 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +    +     +      +G  M EV     G H   N L  + +   L  
Sbjct: 236 YGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACIAVAMELDV 295

Query: 309 DVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 +  + F     R +            + G       +  A   S      ++  
Sbjct: 296 PFSQIQEGFATFGGVGRRFQVKGEVNGITVVDDYGHHPAEIRATLAAGKSGWPERRLVVA 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             PH   R   +  +       +    +          I      G     L + + +  
Sbjct: 356 FQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIE-----GVSAERLAEEIRKHG 410

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVV 448
              V Y    + L   + + +  GD+V+
Sbjct: 411 QRDVTYVADREALPEHLLTIVQPGDIVL 438


>gi|303242546|ref|ZP_07329024.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
 gi|302589908|gb|EFL59678.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetivibrio
           cellulolyticus CD2]
          Length = 464

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/356 (17%), Positives = 118/356 (33%), Gaps = 41/356 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDV 160
                 A I A+TGS GKTTT  ++   L++             +IG PL +      + 
Sbjct: 111 FFEVCPAQIFAVTGSDGKTTTTTLIYNMLTAQGYNCWLG----GNIGTPLLSKIDEIKET 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L         + P++AV+T +AP HL     ++E   AK  IF    K+
Sbjct: 167 DKVVLELSSFQLHT-----MTLSPNVAVVTNLAPNHLDMHKSMDEYIEAKKNIFLHQSKS 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN+D+       +K     +       K  +      +    S+   +   +    
Sbjct: 222 DKVILNFDNDITREF-SKDVKGNVVYFSRVNKIDSGAKMDGEMLVYSDGKDIREIVNSGD 280

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +       +      +      I   ++DT  +  + F   E R              
Sbjct: 281 IVIPGVHNIENY-----LAAIAAVIDYVEIDTIKRVATTFKGVEHRI---ELVRELDGIK 332

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P+   A ++   Q      G            G   +  +  + EVL    
Sbjct: 333 FYNDSIASSPSRTIAGLNSFKQKVILIAG------------GYDKKIPYDVMGEVLVN-K 379

Query: 401 ISHVWLSGFHVLALKDAL---------PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +  + L G     ++ AL          + I+V    T+             GD++
Sbjct: 380 VKCLVLVGQTAPKIEKALLDEVQRTGNGKDINVIKCSTLKEAVQKAYEFAKSGDII 435


>gi|134095921|ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Herminiimonas arsenicoxydans]
 gi|133739824|emb|CAL62875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Herminiimonas
           arsenicoxydans]
          Length = 459

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/374 (13%), Positives = 97/374 (25%), Gaps = 40/374 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   L+    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGTGRESSFFVIEAD 164

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                           R   A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 165 EYDTAFFDKRSKFVHYRAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGVGRMIAN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC------SEQSWMEVQLQGKS 280
             +   + +  +      +   S  +                     + +         +
Sbjct: 225 AREESLQRVIKRGCWSETEWFGSKEQDGWTMTTHDDDTFDVFFNGEKQGTVQWPLNGEHN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  I       +L    I S+   +       L            +          
Sbjct: 285 RMNALAAIAAARHVGVLPAQAIASLGQFENVKRRMELRGVVNDIAVYDDFAHHPT----- 339

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +     A ++  +     ++          LG M      S            L +
Sbjct: 340 ----AIATTVAGLRKKVGTARILAVLEPRSNTMKLGTMKAALPGS------------LLD 383

Query: 401 ISHVWLSGFHVL-------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              V+  G            L +AL            ++ L   I  +   GD ++V  S
Sbjct: 384 ADLVFGYGASGNGKDALGWDLAEALAPLGDRGSAFSDLNALVAAIAKNAQPGDQILV-MS 442

Query: 453 NSCGFYRLINLLLE 466
           N  GF  +   +L+
Sbjct: 443 NG-GFGGVHQKILD 455


>gi|313668293|ref|YP_004048577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ST-640]
 gi|313005755|emb|CBN87209.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria lactamica 020-06]
          Length = 458

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 119/416 (28%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNKGLPYISGPQWLAENVL-------------HRHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       ++  +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EYGWQVGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHAGVDIRTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL     V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKA------------ALPASLKEADQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHGKLLDALK 458


>gi|298368899|ref|ZP_06980217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282902|gb|EFI24389.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sp. oral taxon 014 str. F0314]
          Length = 458

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 115/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKAALPESLK------------GADQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGKLHVGQDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALQ 458


>gi|291529269|emb|CBK94855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale M104/1]
          Length = 453

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 96/317 (30%), Gaps = 39/317 (12%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  I       +PH++ I  I P HL+    +E    AK +I +        
Sbjct: 162 VAEISSFQLETID----TFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYC 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LNY+D       A+  A  I        S+             +               
Sbjct: 218 VLNYEDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVR-----DKVIDVN 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G H  +N++    +       +D  ++ L  F        R      +      +
Sbjct: 273 ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKKFKAV---EHRIEYVTEKRGVRFYN 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +    I  +++ +    G            G   QS + +  E      +  
Sbjct: 330 DSKGTNPDAAIQGIRAMNRPTLLIGG------------GYDKQSEYDEWIE-AFDGKVKE 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + L G     +++   R   ++    +T +    +     V GD V++    +S      
Sbjct: 377 LVLIGQTADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLLSPACASWGMFPN 436

Query: 453 ---NSCGFYRLINLLLE 466
                  F  ++    E
Sbjct: 437 YEERGRIFKEIVKGFKE 453


>gi|146276742|ref|YP_001166901.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|166224764|sp|A4WQD2|MURD_RHOS5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145554983|gb|ABP69596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 465

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 116/395 (29%), Gaps = 35/395 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAIT 114
             ++V +  +  +     PV            +D+       A            ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   L+   +          +IG  +       D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILAESGR----PTQMAGNIGRGVLDLDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F        +    +     L
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLYL 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A     +      +  +                 + +  +   +    G   A 
Sbjct: 239 AGQLSVAPEDDRVIRISAGQKLERFGWAVFARKGFLAEWRKGRQMASIDLRAMPGLPGAH 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +          +        +G   R +    +     +++S   N  S  
Sbjct: 299 NHQNACAAYAACRTLGLAPRQIEEALGSFKGLPHRSQLVGERNGVRFVNDSKATNVDSAA 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+    +I     G     LG   + G  +   H+D         +   +L G      
Sbjct: 359 KALQAFPKIRWIAGG-----LG--KDGGIAALRPHLD--------AVVKAYLIGHSARDF 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + H    ETMD   +        G+VV++
Sbjct: 404 ALQMGATDH-EICETMDRAVVRAAEEAQPGEVVLL 437


>gi|168492240|ref|ZP_02716383.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183573524|gb|EDT94052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC0288-04]
          Length = 450

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 75/389 (19%), Positives = 140/389 (35%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ +    + +  IP      +  AL K          A L S+A II ITGS GKTTT
Sbjct: 68  LLDEEFALMVKNPGIPY-SNPMIEKALAKRIPVLTEVELAYLISEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLVKDLASKTEA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D  T  + LS F   + R    +   +       ++S + N  +         
Sbjct: 289 VAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + + + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|159044992|ref|YP_001533786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Dinoroseobacter shibae DFL 12]
 gi|189082879|sp|A8LS92|MURD_DINSH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|157912752|gb|ABV94185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dinoroseobacter
           shibae DFL 12]
          Length = 464

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/404 (16%), Positives = 117/404 (28%), Gaps = 40/404 (9%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV-------FGVD-DVLGALNKLAVAARLRSK-- 107
             A   G   ++ +  +     + +  +         VD D+       A          
Sbjct: 61  ADAFD-GVAALITSPGIPHLYPTPNPTIALAMSLGIPVDNDIGLFFRSFATPDWDEFDSL 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IA+TGS GK+TT  ++   L++  +          +IG  +       D    + EL
Sbjct: 120 PRVIAVTGSNGKSTTSALIHHVLTAAGR----PTQLAGNIGRGVLDIDPGEDGGIVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFL 225
                     L   + P IAV T ++P HL    G+     A  +     G ++      
Sbjct: 176 SSYQ----TELARALTPDIAVFTNLSPDHLDRHGGMGGYFAAKRRLFTIGGPDRAVIGTD 231

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +  F     + + A       +  K     + +   K    +     Q     +  + 
Sbjct: 232 EPEGLFLASQLSVAPADDRVIRVTSAKPSGPGWVVSARKGFLAEHRKGRQTGSIDLRPIP 291

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN          L           + F     R    +        T +++S
Sbjct: 292 GLPGAHNHQNAACAYAACRSLGLAPRQIEAGFASFKGLPHRS---QIVGTANGVTFVNDS 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+    +I     G          E G  + + H        L  +   +
Sbjct: 349 KATNVDSAAKALQAFDRIRWIAGGLE-------KEGGLAALTPH--------LGGVRKAY 393

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G         +P + H    ETM        +    GD +++
Sbjct: 394 LIGRSAAEFALGIPDTPH-EVCETMARAVAAAVAEAEPGDTILL 436


>gi|3122406|sp|O07669|MURD_ENTHR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2222673|emb|CAA74234.1| murD [Enterococcus hirae]
          Length = 460

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 97/319 (30%), Gaps = 43/319 (13%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L          RPH+AV+T I  AH+      +E   AK  + + + +
Sbjct: 167 DDKIVMELSSFQLM----GITDFRPHVAVVTNIYEAHIDYHKTRKEYVKAKWHLQQNMTE 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN++      L  K+ A  +           A  Q      CS    +    +  
Sbjct: 223 KDYLILNWNQEELRELSKKTKATVLP---------FATEQKLPKGACSLDGSIYYNQEKI 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  + +  +     +    AL  FH    R    +        
Sbjct: 274 MDITELGVPGSHNVENALAAISVAKLYGISNEAIKNALHHFHGVPHRT---QYVGEFQGR 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  +          +S     + + + G     G    +   +L   L   
Sbjct: 331 KFYNDSKATNILA------TKMALSGFQLDQLVLIAG-----GLDRGNSFDELIPALK-- 377

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVK---SS-- 452
            I  +   G     L+DA  ++    +  +E  +           +GD +++    +S  
Sbjct: 378 GIKALITFGETQNRLEDAGKKAGIPVIKTAENAEAAVPIALELSEEGDSILLSPANASWD 437

Query: 453 -------NSCGFYRLINLL 464
                      F   +N L
Sbjct: 438 QYPNFEIRGERFMEAVNKL 456


>gi|255524030|ref|ZP_05390992.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296186887|ref|ZP_06855288.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
 gi|255512317|gb|EET88595.1| UDP-N-acetylmuramate/alanine ligase [Clostridium carboxidivorans
           P7]
 gi|296048601|gb|EFG88034.1| UDP-N-acetylmuramate--alanine ligase [Clostridium carboxidivorans
           P7]
          Length = 458

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 128/394 (32%), Gaps = 39/394 (9%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              V  +   +     L+IP+          L  L    +       +AI G+ GKTTT 
Sbjct: 77  TAAVSKDNPELLKAKELNIPIM----SRAEFLGHLMKGHKFN-----VAIAGTHGKTTTT 127

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++    +       +        V   L  +  +V  G  E  ++   E +       
Sbjct: 128 SMVSHIFLNANLDPTIL--------VGGQLDAINGNVRTGNSEYFLTEACEYKGSFLKFF 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P+I VI  I   HL  +  I++I +A  +  + + K G +    +D     + ++ +   
Sbjct: 180 PYIGVILNIDADHLDFYKDIDDIQNAFIKFAKLIPKNGYLICYGEDPRMGKVISECNCNV 239

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +    + G     + +  +       S+           V  +  G H   N L ++ + 
Sbjct: 240 LTYGLTNGNVVAKNMKFDEKGC---ASFDVYAANEMITSVKLNVPGKHNILNALASICVS 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV---- 359
             L    +   K L  F     R +             + + Y  +P  +KA +S     
Sbjct: 297 LSLDIPTNLISKGLESFKGTHRRFE----IKGVKNGITVVDDYAHHPTEIKATLSAAKNY 352

Query: 360 -----LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R + +  +  E    +    +      +    + V  S      +
Sbjct: 353 PHNKIFCVFQPHTYSRTLNLFKEFTEAFGDADELILADI-YAAREKDTGVVSSSMLANKI 411

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           K+      + H   + + +  ++  +  +GDV++
Sbjct: 412 KETKSACFNFH---SFEEIVSYLNKNAKNGDVIL 442


>gi|261400231|ref|ZP_05986356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
 gi|269210030|gb|EEZ76485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria lactamica ATCC 23970]
          Length = 458

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 126/414 (30%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNKGLPYISGPQWLAENVL-------------HRHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGIPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   D+ TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDIRTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKA------------ALPASLKEADQVFCYAGGVDWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
             +P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 407 ALVPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHGKLLDALK 458


>gi|298531031|ref|ZP_07018432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509054|gb|EFI32959.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 433

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 111/388 (28%), Gaps = 61/388 (15%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           +GA LVVV+  +  ++     P       + +  +LA          +IA+TG+ GKTTT
Sbjct: 73  QGADLVVVSPGISLAMVRGLCPAGQ---TVISELELASWF---ISEPVIAVTGTNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
             ++   L    +          +IG PL+   +     D  + E+    L         
Sbjct: 127 CMLIQKVLEKAGRRVFTG----GNIGTPLSDHVLSGKRADILVLEVSSFQL----QGCSG 178

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             PH+ V+   +  HL +    +E   AK ++F                    L      
Sbjct: 179 FTPHVGVLLNFSANHLDHHESEDEYFRAKMQLFARQGPMD-------------LAVLPLD 225

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           L  +    F    N  +     +                  ++  G            L 
Sbjct: 226 LRARVESDFRIKSNITYFAPTGRFHCPGLPGAHNQANMEAAMLACGFVDVSRNIFDQAL- 284

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                          L    P   +    +          I++S      +M AA+    
Sbjct: 285 ---------------LEFVPPPHRQEVFLQDKG----VRYINDSKATTLEAMTAALKAFD 325

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                       + G   + G+ S      LA  L       V+L G      +DA   S
Sbjct: 326 -------SPIRLLAGGRYKGGDFSL-----LAGTLQEKAA-KVYLFGDSREIFEDAWKNS 372

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + +   ++            GD V++
Sbjct: 373 ADMEHFADLEQAAARAVQEAGPGDNVLL 400


>gi|149190169|ref|ZP_01868445.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
 gi|148836058|gb|EDL53019.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio shilonii AK1]
          Length = 486

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 146/419 (34%), Gaps = 42/419 (10%)

Query: 47  KGPHYDGHDFI-LHA--VQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAA 102
           KG       +I   A  ++  A +VVV+T +      L +     +  V  A   LA   
Sbjct: 66  KGATV----YIGHQASNIEN-ASVVVVSTAIDPENQELVAAKELRIPVVRRA-EMLAELM 119

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R R     IA+ G+ GKTTT  ++T   S        +                  +   
Sbjct: 120 RFRHG---IAVAGTHGKTTTTALVTQIYSEAGMDPTFVNGGLVK--------SAGTNARL 168

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTG 221
           G   + ++   E       ++P ++++T I   H+  +    + +     +    L   G
Sbjct: 169 GSSRILIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFDTLKQTFIDFLHNLPFYG 228

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKS 280
              +  DD     L         + + ++G S +AD ++  ++Q   +  +  V+   ++
Sbjct: 229 QAVMCVDDPVVRELIP----SVSRQVITYGFSDDADVRIENYRQDGQQGKFTVVRKGREN 284

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +E+  +  G H A N    + + +      +  + A+        R +            
Sbjct: 285 LEITLNIPGQHNALNAAAAIAVATEDNIADEAIVNAMLGTEGTGRRFEHLGEFETGNGKV 344

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + Y  +P  +   I                V+         ++  + D A VL   +
Sbjct: 345 MLVDDYGHHPTEVDVTIKAARNGWAEK----RLVMIFQPHRYSRTRDLYDDFANVLEQVD 400

Query: 401 ISH---VWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           +     V+ +G   +A  D   L R+I         +   ++ L   + + L +GD+++
Sbjct: 401 VLVMLDVYSAGEAPIAGADGRSLCRTIRTRGKLDPVFVPDVNALPSVLSNLLQEGDLLL 459


>gi|85714971|ref|ZP_01045956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
 gi|85698168|gb|EAQ36040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           sp. Nb-311A]
          Length = 466

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/378 (14%), Positives = 105/378 (27%), Gaps = 43/378 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GK+TT  ++   +               +IG  +     P     
Sbjct: 109 RHAPDAPFVAITGTNGKSTTTALVAHLMREAGHDVQMG----GNIGTAILSLEAPRRGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     L   + P + ++  ++P HL     IE  A  K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LAPSLDPTVGILLNVSPDHLDRHGTIEHYAEVKERLIAGVQPQGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD +   +  +    G   +    +   A           E+  +        + 
Sbjct: 221 AVVGVDDRWCAAIADRQERAGRNVVRVSVRQPLA----YGVNVEQERIVLASGGARSEIA 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +          N        +   A   +            G   R      +     +
Sbjct: 277 DIGGIGSLRGRHNAQNAACASAAALALGVSREILQQDLRSFPGLAHRMEQVGRKAHVLFV 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+S  + I     G+  +  G +  +                   I 
Sbjct: 337 NDSKGTNADATGKALSSFADIFWIAGGKPKS--GGIASLDAFFPR-------------IR 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KSS--- 452
             +L G         L   +    S T+D                  VV++    +S   
Sbjct: 382 KAYLIGEAAQEFAATLEGKVAYEISGTLDVAVPAAARDAEGAGVAEAVVLLSPACASFDQ 441

Query: 453 ------NSCGFYRLINLL 464
                     F  L+  L
Sbjct: 442 FRNFEVRGDHFRELVQAL 459


>gi|320183625|gb|EFW58468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella flexneri
           CDC 796-83]
          Length = 438

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 128/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T   +   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSWKAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|317046895|ref|YP_004114543.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
 gi|316948512|gb|ADU67987.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. At-9b]
          Length = 438

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 128/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALSL-LKSPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ ++   A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENARVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG     D       +    +W+ V+ +   
Sbjct: 210 VVNADDGMTMPVR--------GADTRCVSFGI----DIGDYHLNRQQGSTWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +++KAL+ F     R    +         
Sbjct: 258 NTDEMKLVGQHNYTNALAALALADAVNIPRASSLKALTTFTGLPHRF---QLVHEAHGIR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  +   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----KGTLWLLLGGDGKSADFSP-----LARYVQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G    AL  AL   I    +ET+      I S    GD+V++    +S     
Sbjct: 365 V-RLFCFGRDGDALA-ALRPEI-ATRTETLQQAMAQIASQAQAGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 422 NFEQRGDQFAQLAKEL 437


>gi|88607959|ref|YP_506139.1| hypothetical protein NSE_0245 [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600128|gb|ABD45596.1| conserved hypothetical protein [Neorickettsia sennetsu str.
           Miyayama]
          Length = 469

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/444 (12%), Positives = 122/444 (27%), Gaps = 28/444 (6%)

Query: 27  VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  I+ D + +     F+A        H  I  A+ +GA  ++ N        +  +  F
Sbjct: 15  IKNITSDPQKVGKDFLFYA-PSEKEHAH--IREAINRGARSILTNQKYEEECLAQGVNFF 71

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
                    +++      +  A + A+TG+ GK +     +   +   K    + + N  
Sbjct: 72  VHTQPQQIYHEVCSCMWKKQPAYMCAVTGTSGKRSVGHFFSQVCTLAGKKAVSLSASNE- 130

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              P     +  + D  I +    +          +      I+  A         +   
Sbjct: 131 ---PTDALGLWQEKDHMILDAADMYSILDDLAGRRIEYCCLAISGAAIESRMI-DSVNLK 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A+A + +     +              LL       GI  +    +      Q    K+ 
Sbjct: 187 AAAFSNLLRDDLEQPEDIDKRFQMKVRLLSEVLPEDGIMVLPVASEYTTRIIQHCPNKKV 246

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL---GIVSILTADVDTAIKALSVFHPK 323
                    +Q  S      G    M       +    I+     +       L++    
Sbjct: 247 CTYGRATSDIQLISQLPTQKGQILTMKVLGKEMVIHTNILGKFHGNNLVTAMGLAISCGI 306

Query: 324 EGRGKRYRCALNQGFFTLIDESYN-------ANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +     +        +    E Y            +      +L  I  H     + ++ 
Sbjct: 307 DPSSIEHEQISPLAGYMEFLEEYGEERKIMTDCAQTPSELHDLLLSIKWHFPYNDVTLVL 366

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-----KDALPRSIHVHYSETMD 431
              E  E   +    +A++ +      ++ S  +   L     ++ +         E   
Sbjct: 367 RCSENYEGKNTL--KMAKIAAKMVNRIIFTSDSNGSTLTEKSRRELMSCCPKAIEIEDRK 424

Query: 432 GLFLFIQSSLVDGDVVV---VKSS 452
               +  ++    +++V   VKSS
Sbjct: 425 KAMEYAINNCKPSEIIVMQGVKSS 448


>gi|110833460|ref|YP_692319.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
 gi|123345752|sp|Q0VS01|MURC_ALCBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110646571|emb|CAL16047.1| UDP-N-acetylmuramate--L-alanine ligase [Alcanivorax borkumensis
           SK2]
          Length = 474

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 80/415 (19%), Positives = 146/415 (35%), Gaps = 39/415 (9%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAAR 103
           G   D GH      +  GA +VV +T +      ++        V  V  A   LA   R
Sbjct: 61  GVRVDIGHR--AENID-GADVVVTSTAVNTENLEVAAAHERRIPV--VPRA-QMLAELMR 114

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R     IA+ G+ GKTTT  +    ++        +     +               + 
Sbjct: 115 FRHG---IAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNS---AGTNARLGQSRYL 168

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + E   S    +      ++P  A++T +   H+  +     ++ +   E    L   G 
Sbjct: 169 VAEADESDASFLH-----LQPMSAIVTNVDADHMHTYGGDFAQLENTFIEFLHNLPFYGV 223

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD     L  + +   I+  +S      A+   +         +  V+ +G+ ++
Sbjct: 224 AVMCVDDPVVRKLLPRVNRQVIRYGFSEDADLRAENVRQDGMVTH---FRVVRAEGEPLD 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L  + + +   A  +  I+ L+ F     R          G    +
Sbjct: 281 VSLNMPGRHNVLNALAAIAVSADEGAGDEAIIRGLNNFTGVGRRFDVQGDYHFDGGSATL 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  +P  + A I     I     GRR+A+L         +Q  + D  EVLS  ++ 
Sbjct: 341 VDDYGHHPREVAATIDA---IREGWPGRRLAMLFQPHRY-TRTQDLYEDFVEVLSGVDVL 396

Query: 403 ---HVWLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               V+ +G          AL  +L  R +   + +  D L   + S L +GD++
Sbjct: 397 LMLEVYAAGEEPIPGADARALCRSLRKRGLEPVFVDDPDKLQGLLASQLQNGDLL 451


>gi|322807873|emb|CBZ05448.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum H04402
           065]
          Length = 458

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 127/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGDLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++    I 
Sbjct: 181 IGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  +GD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKNGDLIL 441


>gi|194290727|ref|YP_002006634.1| udp-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
 gi|193224562|emb|CAQ70573.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus taiwanensis LMG 19424]
          Length = 462

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 66/406 (16%), Positives = 119/406 (29%), Gaps = 29/406 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+         L   +  V         L      R    ++A+ G+ GKTTT  ML  
Sbjct: 70  VVSRGNPLMEAILDRNLPYVSGP----QWLGEHVLAR--KWVLAVAGTHGKTTTTSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFL--THLVRP 184
            L                 GVP     +    + DF + E                  RP
Sbjct: 124 ILEDAGYNP-----GFLVGGVPQNFGISARVTESDFFVIEADEYDTAFFDKRSKFVHYRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +   H   F  +  I +    +   +   G I +N  +     +  +     +
Sbjct: 179 RTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGQGRIVVNGVEESLARVLERGCWSEV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +     G  + +D          + ++        +  VV    G H   N L  +G   
Sbjct: 239 EQFG-VGDWRESDAARTPAAPGKD-AFDVWFGDAVAGTVVWDLQGTHNRMNALAAIGAAR 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLS 361
            +      AI++LS F   + R +    A        F     +       ++  +    
Sbjct: 297 HVGVPAAQAIESLSRFANVKRRMEVRGVAGGVTVYDDFAHHPTAIQTTLDGLRRRVGNAR 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            ++          LG M      S      +    +      +         L +AL   
Sbjct: 357 ILAVLEPRSNTMKLGVMKAQLPASLEQADLVFGYGAPAGKDAL------GWDLAEALAPL 410

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                  + +  L   ++++   GD V+V  SN  GF  +   LL+
Sbjct: 411 GATATAFQDLGTLVQAVRAAAQPGDHVLV-MSNG-GFGGVHQKLLD 454


>gi|146305955|ref|YP_001186420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina ymp]
 gi|145574156|gb|ABP83688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudomonas
           mendocina ymp]
          Length = 448

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 116/363 (31%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++    ++  K      +   ++G P     +  DV+
Sbjct: 103 FARHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LADDVE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +   +A    I+  H+  +SG+     AK  IF G  +  
Sbjct: 158 LYVLELSSFQLETTD----QLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQVV 213

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++       T + FG  K    +    ++  E+S          +
Sbjct: 214 VNRDDA--------LSRPLIADQVTCWEFGLGKPDFKRFGLLEENGEKSLAFRFEALLPV 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +   ++  +  L  F     R    +    +     
Sbjct: 266 S-ELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGLPHRC---QWVGERAGVNY 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +     G+ + + G   + G    +    +A        
Sbjct: 322 YDDSKATNVGAA---LAAIEGLGADIAGKLVLIAGGDGK-GADFSALKAPVARFCRA--- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     +  AL  +  +    T+D            GD V++    +S      
Sbjct: 375 --VVLLGRDAELIAAALGDAAPLVRVTTLDEAVQRCSELAEAGDAVLLSPACASLDMFKN 432

Query: 457 FYR 459
           F  
Sbjct: 433 FEE 435


>gi|332968967|gb|EGK08011.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Kingella kingae
           ATCC 23330]
          Length = 443

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/364 (17%), Positives = 117/364 (32%), Gaps = 40/364 (10%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV      LA   R +    IIAITGS GKTTT  ++              G+    
Sbjct: 92  VVGDV----AILADLLRGQPD-KIIAITGSNGKTTTTSLVGHLCQQSGLDTVIAGNIGTP 146

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           + +   L R     D  + EL    L         +    A    I+  HL  +  + + 
Sbjct: 147 V-LEAWLERRGKPADVWVLELSSFQLETTD----CLNATAATCLNISEDHLDRYDDLLDY 201

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A AK  IF G                ++L A                  +  Q + +   
Sbjct: 202 AHAKDRIFHG-------------DTVQVLNADDVFCRAMKRDHRTVHYFSLTQSQDYHLD 248

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +  + ++ +      +      G H A N+L  L +   +  + +T +  +  F      
Sbjct: 249 AATAQLKHRQDNLLPQNAIPLQGSHNAANVLAALALCESIGMERETLLCHVQTFKGL--- 305

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R      +     ID+S   N  +  AAI+ L +       +   + G M +    + 
Sbjct: 306 PHRVEKVGEKNGVVFIDDSKGTNVGATVAAIAGLRE-------KIWLIAGGMGKGQNFTP 358

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
                    +       V+L G     +   L    + + + +T+        S+   G+
Sbjct: 359 ------LRDVLQGKAGAVFLIGVDAPQIAQDLDGCGVDLIFCDTLPQAVQQAFSAAKSGE 412

Query: 446 VVVV 449
           +V++
Sbjct: 413 IVLL 416


>gi|327534579|gb|AEA93413.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis OG1RF]
          Length = 456

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L  F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|307275476|ref|ZP_07556618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|306507864|gb|EFM76992.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2134]
 gi|315171930|gb|EFU15947.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1342]
          Length = 456

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L  F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|253997650|ref|YP_003049714.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
 gi|253984329|gb|ACT49187.1| UDP-N-acetylmuramate [Methylotenera mobilis JLW8]
          Length = 463

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/422 (16%), Positives = 129/422 (30%), Gaps = 56/422 (13%)

Query: 69  VVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV+    ++  I +  +P             LA          ++A+ G+ GKTTT  ML
Sbjct: 70  VVSRGNPLMEEILNRGLPYISGP------QWLAENVLQ--GKWVLAVAGTHGKTTTSSML 121

Query: 127 TIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
              L                          VP+          F + E            
Sbjct: 122 AWILEYAGLAPGFLIGGVPENFSVSARLPQVPVQDKNSV--SPFFVIEADEYDTAFFDKR 179

Query: 179 --THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 RP  AV+  +   H   F  +  I      +   + + G +  N  ++  + + 
Sbjct: 180 SKFVHYRPRTAVLNNLEFDHADIFEDLSAIEKQFHHLVRTVPQQGLVVANGKETSLQRVL 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K     +    +       D   +      + S+  +        V    +G H   N 
Sbjct: 240 DKGCWTPVDKFGT-------DDDWQATNAQGDGSFDVIYKGQMQGHVAWGLLGEHNRMNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNANPASM 353
           L ++         VD +I AL+ F   + R +     R  +    F     +     A +
Sbjct: 293 LASIAAARHAGVAVDVSIAALTEFKNVKRRMEVRGESRGVVVYDDFAHHPTAIETTIAGL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----GF 409
           +A +     ++          LG M              A   SL     V+      G+
Sbjct: 353 RAKVGAARILAVLEPRSNTMKLGVMKN------------ALPASLAQADLVFCYQANLGW 400

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
              A   ++     VH  + +  L   I+ ++V GD V++  SN  GF     +L++ L 
Sbjct: 401 DAGAALASIAHKTQVH--DDLAQLIQAIKQAVVAGDHVLI-MSNG-GFGGIHQKLLDALK 456

Query: 466 EE 467
           ++
Sbjct: 457 QD 458


>gi|251772197|gb|EES52767.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 488

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/397 (14%), Positives = 126/397 (31%), Gaps = 38/397 (9%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           ++ G L   A          ++AI G+ GK+TT  ++   L S   +    G++      
Sbjct: 99  NIRGELEWAASLW----DRPVVAIGGTNGKSTTTALVGHLLKSAGFSPFIGGNFGVPFSE 154

Query: 150 PLTLARMPVD------VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            + L R           D  + E+                P I ++  I P HL  +  +
Sbjct: 155 GVRLMRTARKEGKRDPFDVAVIEVSSFQ----TESMQSFSPDIYLLLNITPDHLDRYDSL 210

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +   AK  +      + T+  N     +     ++ A  +       +       L   
Sbjct: 211 AQYRLAKLHVASLFSPSTTVIWNASQDDWREWGPRTKARSVFVG--SAELPGPGVVLSGS 268

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
              S        +      ++  G   ++A ++L T+ +   +   +D  I   ++    
Sbjct: 269 HLQSHGLRDSFSVSTAGYRLIGGGNLQNLAFSVLATILLGETMGRRIDPGILEEAIASFT 328

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
               +           T +++S   N  ++    + L+ +S  G    + ++G     G 
Sbjct: 329 GLPHRM-ERVATVRGVTFVNDSKATNVGAV---EAALAGLSDVGHPHVVLIMG-----GR 379

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                +  L   L   ++  V   G     ++  L + I +  ++ +        S    
Sbjct: 380 DKGGSYRPLIPWL-KNHVREVVAIGEAREKIRRDLGKEIPIEEAQDLFEAVARAFSVADS 438

Query: 444 GDVVVV---KSS---------NSCGFYRLINLLLEEF 468
           G++V++    SS             F   +  L  +F
Sbjct: 439 GEMVLLSPACSSYDMFHGYEERGERFREAVRRLSAKF 475


>gi|146342500|ref|YP_001207548.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. ORS278]
 gi|146195306|emb|CAL79331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bradyrhizobium sp.
           ORS278]
          Length = 466

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 118/378 (31%), Gaps = 43/378 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  IAITG+ GK+TT  ++   +               +IG  +     P     
Sbjct: 109 RHAPDAPFIAITGTNGKSTTTALIAHLMRVAGYDTQMG----GNIGTAILSLEPPRMGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P I ++  ++  H+     IE  A+ K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LTPSLDPSIGILLNVSEDHIDRHGTIENYAAVKERLVAGVKPQGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD F   +  +    G + +    K+  AD    + +    +S    + +   + 
Sbjct: 221 AIVGVDDGFCRAIADRLDQAGKRVVRISVKNPLADGLYTEHETIV-RSSGGARSEVARLG 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H AQN          +    D   + L  F     R          G    +
Sbjct: 280 GIGSLRGQHNAQNAACAAAAALAIGVREDVLQQGLRSFPGLAHRM---EQVGRLGNVLFV 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+S  + I     G+  A  G +  +                   I 
Sbjct: 337 NDSKGTNADATAHALSSFADIFWIAGGKPKA--GGITSLAGFFPR-------------IR 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KSS--- 452
             +L G         L   +    S T++       +          VV++    +S   
Sbjct: 382 KAYLIGEAAKEFAGTLGEKVPHAMSGTLEVAVEQAAADAKASGLKEAVVLLSPACASFDQ 441

Query: 453 ------NSCGFYRLINLL 464
                     F  L+  L
Sbjct: 442 FRNFEIRGTRFRDLVQAL 459


>gi|257066466|ref|YP_003152722.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
 gi|256798346|gb|ACV29001.1| UDP-N-acetylmuramate/alanine ligase [Anaerococcus prevotii DSM
           20548]
          Length = 462

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 118/389 (30%), Gaps = 30/389 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++ + + + +   L++PV       G  L  L    +       IA++GS GK+TT  M
Sbjct: 79  AILDDNEELIAAKKLNVPVV----TRGVFLGALMRNYKNS-----IAVSGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K    +               M  +V  G  E  ++   E +       P 
Sbjct: 130 ISKILMHSDKDATILLGGELD--------EMKGNVRVGSEEYLVTEACEYKGNIRYYYPQ 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  I   HL  +  +++I     E     ++      N ++     L   S    + 
Sbjct: 182 TLIILNIDEDHLDYYKDLDDIVDTFREYLSNQDENSMTITNLNEEN-NRLIFDSVKGKLI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T        +      K+ +    ++      G         IG H   N + ++     
Sbjct: 241 TYAQENDEADYCAFNIKFDEIGRPNFDLRMRNGDVEHFELGVIGRHNINNAMASIIATYE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVL 360
              D++T  K +  +   + R +      +    T             +         ++
Sbjct: 301 NGIDIETIRKNILKYEGLDRRMQIIGEVDDATIMTDYGHHPSEIKVTLDALKEHTKGRLI 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
               PH   R  A+  D     + S    I      +            H   + DAL  
Sbjct: 361 CVWQPHTYSRTKALFDDFLTCFDSSDEVIITDI-YAAREKFDPSI----HSKDVVDALVK 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + I+  Y    +    +I   +   D+V+
Sbjct: 416 KGINAKYIGKFEDCRDYIYKEIKKDDLVL 444


>gi|299147132|ref|ZP_07040199.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
 gi|298515017|gb|EFI38899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bacteroides sp.
           3_1_23]
          Length = 444

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 119/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMICITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGKSLALQVAEDYHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYNFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITQNQTPDDAFIF 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD       AK         ++  K   A   +   +       +   +     +   
Sbjct: 213 WNDDPIIRQELAKHGLKAHLYPFAAVKEDGAIAYVEDHEV-----KITEPIAFNMEQEEL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++     +   KALS F   E R               I++S
Sbjct: 268 ALTGQHNLYNSLAAGISANLAGIAKENIRKALSDFKGVEHRL---EKVARVRGIDFINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G H   L +   R  + V   +T M             G+ V++    +S        
Sbjct: 373 L-GLHNEKLHEFFDRFGLPVADVQTGMKDAVEAAYKLAKKGEAVLLSPCCASFDLFKSYE 431

Query: 453 -NSCGFYRLINLL 464
                F   +  L
Sbjct: 432 DRGDQFKECVRAL 444


>gi|239945137|ref|ZP_04697074.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|239991598|ref|ZP_04712262.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           roseosporus NRRL 11379]
 gi|291448599|ref|ZP_06587989.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
 gi|291351546|gb|EFE78450.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces roseosporus
           NRRL 15998]
          Length = 466

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 140/400 (35%), Gaps = 41/400 (10%)

Query: 65  AGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VVV++ + A          L+IPV    D   AL  L    R       IA+ G+ G
Sbjct: 70  ASCVVVSSAIRADNPELLRANELAIPVVHRSD---ALASLMNGLRA------IAVAGTHG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML +ALSS+    +     +              + D  + E   S        
Sbjct: 121 KTTTTSMLAVALSSLSLAPSYAIGGDLEG---PGTNATHGEGDIFVAEADES-----DRS 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P +A++  +   H +N++ ++EI  +       +   GT+ ++ D      L  +
Sbjct: 173 FQKYDPEVAIVLNVELDHHANYASMDEIYDSFETFVGKVVPGGTLVISADQPGAVELTRR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              L    + ++G +++AD ++ K       S + V L GK +       G H A N + 
Sbjct: 233 VRDLADLKVVTYGSAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSVPGAHYAHNAVA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L         AL  +   + R +       +     + +SY  +P  M A + 
Sbjct: 293 ALAAGVALGIPAHNLASALGSYTGVKRRLQ----LKGEAAGVQVIDSYAHHPTEMTADLE 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
               +       RI V+     +   +Q    ++ + L+L + S V            G 
Sbjct: 349 A---MRGAAADARILVVFQPH-LFSRTQELGTEMGQALALADASVVLDIYPAREDPIPGI 404

Query: 410 HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               + DA       V        +   I      GD+V+
Sbjct: 405 TSALIIDAAKTAGAEVTAVHDQADVPAAIAGMAKPGDLVL 444


>gi|260589032|ref|ZP_05854945.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
 gi|260540811|gb|EEX21380.1| UDP-N-acetylmuramate--alanine ligase [Blautia hansenii DSM 20583]
          Length = 474

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 73/393 (18%), Positives = 130/393 (33%), Gaps = 38/393 (9%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +       A      IP+          L ++    RL      IA+ G+ GKTTT 
Sbjct: 91  TAAIHEDNPEFACAKEKGIPMI----TRAELLGQIMKNYRLP-----IAVAGTHGKTTTT 141

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L   +              V   L  +  ++  G  E  ++   E         
Sbjct: 142 SMISHVLLEAEADPTIS--------VGGILPAIHGNIRVGNSETFITEACEYTNSFLSFF 193

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I++I  I   HL  F  +++I  +     E L   GT+ +N D    E +  K     
Sbjct: 194 PKISIILNIDADHLDFFKDLDDIRHSFRLFAEKLPADGTLIINGDIPNVEEITDKLPCEV 253

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           I    ++G  K AD+             S+  +              G H   N L  + 
Sbjct: 254 I----TYGLEKAADYTAANITFDETAHASFDCLHKGQCIGRFSLAVPGLHNVSNALSAIA 309

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAA 356
           +   +  D+DT  + +  F   + R +                     +     A+    
Sbjct: 310 LGEKVGFDLDTVRRGILHFGGTDRRFQYKGKVAGVTIIDDYAHHPTEIAATLKTAANYPH 369

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGE-LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
            +      PH   R  A+   M E  + L+ +  + LA++ +     ++   G     L 
Sbjct: 370 KTTWCVFQPHTYTRTKAL---MDEFADVLATAERVILADIYAARETDNL---GVSSSDLC 423

Query: 416 DAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           D +  R    +Y  T D +  F+  + ++GDV+
Sbjct: 424 DKINERGGKAYYFPTFDEIEAFLLENCINGDVL 456


>gi|56707593|ref|YP_169489.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670064|ref|YP_666621.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456664|ref|ZP_03665137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370111|ref|ZP_04986117.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254874414|ref|ZP_05247124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|62900472|sp|Q5NHK3|MURD_FRATT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595657|sp|Q14J05|MURD_FRAT1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|54113905|gb|AAV29586.1| NT02FT1066 [synthetic construct]
 gi|56604085|emb|CAG45084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320397|emb|CAL08467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568355|gb|EDN34009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254840413|gb|EET18849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282158751|gb|ADA78142.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 416

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 118/393 (30%), Gaps = 70/393 (17%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V D+      +       +KA  IA+TGS GK+T   M    L  +            +
Sbjct: 81  IVSDI-----DIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGY----KSILVGN 131

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
           IG P  L ++    D+ + E+    +     L + VR  +  I  ++P HL  +   E+ 
Sbjct: 132 IGTP-ALNKIGEKFDYCVVEVSSFQIN----LFNCVRFDLGCIINVSPDHLDRYQNFEQY 186

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                                                +            D         
Sbjct: 187 KQ---------------------------------SKLNLAKFSNDFFVYDVHNGIKYAG 213

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             Q       +  +  +           N+   + +++IL        +A+      +G 
Sbjct: 214 EYQIIRGAIYRNSTKLLDIVETKLFGEHNLENIIVVLNILDRLGLDINQAIDSIKKFKGL 273

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R +        T I++S   N  +  AA++ ++          I +LG + + G+ S 
Sbjct: 274 EHRCKIVKKVNSTTYINDSKGTNVGATIAALNSIT-----NSKNIILLLGGVAKGGDFSL 328

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                + + L  Y + +V++ G     ++  +           M   F          ++
Sbjct: 329 -----MIKSLDKY-VKYVYIYGADKEYIESYIKGYCKYQLCNNMKQAFELSSQKANSNEI 382

Query: 447 VVV---KSS---------NSCGFYRLINLLLEE 467
           V++    +S             F  L+  L ++
Sbjct: 383 VLLSPACASFDEFSGYAQRGEVFQNLVAQLEQK 415


>gi|46580907|ref|YP_011715.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601792|ref|YP_966192.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|48428298|sp|P61678|MURC_DESVH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224686|sp|A1VBE9|MURC_DESVV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46450327|gb|AAS96975.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562021|gb|ABM27765.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|311234598|gb|ADP87452.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 454

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 70/386 (18%), Positives = 127/386 (32%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IP+         +  LA   RLR+    IAI G+ GKTTT  +     
Sbjct: 77  DNPEVLAAVEKGIPII----PRAEM--LAELMRLRTG---IAIAGTHGKTTTTSLTAAIF 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               K    I     +            +   G  E  ++   E       + P + V+T
Sbjct: 128 DVAGKDPTVIIGGRLN--------AYGANARLGEGEYLIAEADESDGSFLCLFPIVNVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  ++G +EI  A       +   G   +  DD     L  +      + + ++
Sbjct: 180 NVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVVCGDDPGVRRLLPQV----KRRVVTY 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  K+   +           +      G+  EV     G H   N L  +G+        
Sbjct: 236 GFGKDNALRAEVTSCAETSVFTVFLRGGRLGEVHLGQPGRHNILNALAAIGVALEAGISP 295

Query: 311 DTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  I+ L+ F     R +R           + G   +   +  A   S+     ++    
Sbjct: 296 EHCIEGLARFGGVGRRFERRGERDGVTVVDDYGHHPVEIAATLATARSVYPDRRLVVVFQ 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A+ G+ C++ E      +      S   I      G    +L   + +  + 
Sbjct: 356 PHRFSRTQALFGEFCKVFEPVDKLLLTEIYPASEKPI-----PGVSGQSLAQGIRQVSNT 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V Y ++ D +   +   L  GDV++
Sbjct: 411 DVTYYQSFDEILAALPGVLRPGDVLL 436


>gi|291525273|emb|CBK90860.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           rectale DSM 17629]
          Length = 453

 Score = 61.4 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 97/317 (30%), Gaps = 39/317 (12%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  I       +PH++ I  I P HL+    +E    AK +I +        
Sbjct: 162 VAEISSFQLETID----TFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYC 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LNY+D       A+  A  I        S+             +               
Sbjct: 218 VLNYEDEVLRNFAAECPAKVIFFSSRSELSEGFYLDGDIIIYAHDGVR-----DEVIDVN 272

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G H  +N++    +       +D  ++ L VF        R      +      +
Sbjct: 273 ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAV---EHRIEYVTEKRGVRFYN 329

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +    I  +++ +    G            G   QS + +  E      +  
Sbjct: 330 DSKGTNPDAAIQGIRAMNRPTLLIGG------------GYDKQSEYDEWIE-AFDGKVKE 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + L G     +++   R   ++    +T +    +     V GD V++    +S      
Sbjct: 377 LVLIGQTADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLLSPACASWGMFPN 436

Query: 453 ---NSCGFYRLINLLLE 466
                  F  ++    E
Sbjct: 437 YEERGRIFKEIVKGFKE 453


>gi|296117539|ref|ZP_06836123.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969270|gb|EFG82511.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 477

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 129/414 (31%), Gaps = 41/414 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV    D+L  L +           T + + G+ GKT+T  M+  AL
Sbjct: 84  DNPELVAAREADIPVIRRSDLLAELMQ---------DRTQVLLAGTHGKTSTTSMVVSAL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +  K  +       +              D  + E   S    +R+      P IAVIT
Sbjct: 135 QAAGKDPSFAIGGQLNR---AGTNAHHGKDDIFVAEADESDASLLRY-----DPDIAVIT 186

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS- 249
            I P HL  F   E       +  E ++  GT+ +  +D     L  ++   G++ +   
Sbjct: 187 NIEPDHLDYFGSAEAYFQVFDDFAERIKPNGTLIVCVEDEHAAELGRRAVESGVQVVGYG 246

Query: 250 ------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                          ++   +   E + + V+L    +       G+HM  N    L   
Sbjct: 247 SSKALAQHPDITPGAEILTEEVGRETTAVTVKLPSGEVSYDLQIPGHHMVLNSAAALIAG 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  A      + LS F     R +  R           D +++    +     +     
Sbjct: 307 ELAGAKAQALAEGLSDFTGVRRRFEY-RGTAGDNIRVYDDYAHHPTEVAAVLGAAREKVT 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
           +    GR +        +   +  F  + A+ LSL     V L            G    
Sbjct: 366 AEGLGGRVVVCFQP--HLFSRTIEFANEFAKALSLA--DAVVLLDIFGAREQPVEGVSSR 421

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + D +   + V Y          +       D+V+   + S    +   +L E
Sbjct: 422 IISDKIADDVDVTYEPDFSAARQTVAEMTNSNDLVLTMGAGSVTL-QAAEILEE 474


>gi|257888485|ref|ZP_05668138.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
 gi|257824539|gb|EEV51471.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium 1,141,733]
          Length = 453

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           PHIAVIT I  AH+      +E   AK  + + +   
Sbjct: 164 DKIVMELSSFQLM----GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLVLNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDHAIYYRKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L +FH    R    +         
Sbjct: 271 EISELGVPGTHNVENALAAITVAKLYGISNEAIRQTLHLFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G         L        
Sbjct: 328 FYNDSKATNILATKMALSGFETAKV-------VLLAGGLDRGNTFDELVPSL------KG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDV+++    +S   
Sbjct: 375 IKAMIVFGQTKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNQLK 453


>gi|157373549|ref|YP_001472149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
 gi|157315923|gb|ABV35021.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           sediminis HAW-EB3]
          Length = 443

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 76/412 (18%), Positives = 136/412 (33%), Gaps = 60/412 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  + +   + I V G  DV     +L   A     A +I ITGS GK+T   ++ 
Sbjct: 76  IAIDTPEIRAAIDMDIEVIG--DV-----ELFARAVKERDACVIGITGSNGKSTVTTLVA 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +    Y    +   +IG+P+    +  D++  + EL    L      TH +    A
Sbjct: 129 EMAKAAGINY----AVGGNIGIPVLDL-LQSDIELYVLELSSFQL----ETTHSLNCISA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  +S IE    AK  ++           +      + +            
Sbjct: 180 TCLNISEDHMDRYSDIEAYRQAKLRLYSQTRFALFNREDELTKPKDPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG S   + +    +       +               +G H   N++  + +     
Sbjct: 230 NSFGLSLPDNDEWGVCE-----GKIVHGSVEVISLQDVALVGSHNHANLIAAMALAYQAG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +    ++  S F   E R       +N+     I++S   N  +  AAI  +       
Sbjct: 285 IEKAAMVEVASSFTGLEHRF---EMVVNRNGVAYINDSKATNVGATVAAIEGI----SEH 337

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G     G+   +    L  VL    +SH+   G     +      SI V   
Sbjct: 338 LGDIILIAG-----GDGKGADFKPLVPVLKA--VSHLITLGKDGDKIAALSDSSIRV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           ++M           + GD+V++    +S             F RL   L  E
Sbjct: 388 DSMADAVNKAAQLAIAGDIVLLSPACASLDMYKNFMERGDDFRRLAEGLSAE 439


>gi|269468108|gb|EEZ79818.1| UDP-N-acetylmuramate-alanine ligase [uncultured SUP05 cluster
           bacterium]
          Length = 471

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 129/402 (32%), Gaps = 45/402 (11%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV++ +      L      +IP+         +  L+   R R     IA+ G+ GKT
Sbjct: 74  AVVVSSAIDEKNPELVKARELNIPIV----PRAEM--LSELMRFRFG---IAVAGTHGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   LS  +     I     +      +     + D+ I E   S    +     
Sbjct: 125 TTTSLIAHILSEARLDPTYIIGGILNS---SGINAKLGESDYLIAEADESDASFLH---- 177

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++P ++VIT I   H+S +    +        F          +   D           
Sbjct: 178 -LQPMLSVITNIDQDHMSTYGNDYQNLKDAFVSFTSNLPFYGACVLCMDDVG---ATDIM 233

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLM 298
               + + ++G     D + +  KQ   Q   +V     +       + IG H   N L 
Sbjct: 234 NNIHRPLITYGFDSKVDIRAKNIKQHGMQMHFDVVCDKYNKPFSVELNLIGKHNILNTLA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + I   L   V     AL+ F     R + +          L+ + Y  +P  + A   
Sbjct: 294 AIAIACELKIKVSAIQSALNNFSGVARRLEHHGTLNINNKQVLLFDDYGHHPNEINAVFE 353

Query: 359 VLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            L              PH   R   +  D   +   + +  +      +  +I+ +    
Sbjct: 354 SLQNTYPNKRLVVIFQPHRYTRTRDLFDDFSRVLSKADALILLEIYPANELSIARI---- 409

Query: 409 FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            +  +L  A+ +   +     +    +   + + + + DVV+
Sbjct: 410 -NSSSLASAIRKRSSLDPVVIKNSKEILTVLPNIIKNNDVVL 450


>gi|227509379|ref|ZP_03939428.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227191091|gb|EEI71158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 460

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/378 (17%), Positives = 118/378 (31%), Gaps = 46/378 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIF 165
            A II +TGS GKTTT  M+T  L+  +K          +IGV  T   +    D   + 
Sbjct: 111 DAEIIGVTGSNGKTTTVTMITKILNEERKKGH--AYAAGNIGVSATETALKSTADDTIVM 168

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I+ L     PH+AV+T I   HL      +   +AK  I           +
Sbjct: 169 ELSSFMLLGIKKLH----PHVAVLTNIFSNHLDYHKTRKNYVNAKMRITMNQTPDDFFVV 224

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N+D   +  L  +S A  +    +                  +   +    +        
Sbjct: 225 NFDSDEWRQLSKRSKAQIVPFARTS---------EIDRGAYEKNGKLYYNDEFIMNADDI 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G    +N L  +    IL          L  F     R    +  L        ++S
Sbjct: 276 KVPGQQNVENALAAIATAKILGKSNLAITNVLETFTGVRHRV---QFVLEADGRKFYNDS 332

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              +  +        +QI+  G    + +L    + G                 ++    
Sbjct: 333 KATDIEA--------TQIALEGFDHPVVLLAGGLDRGYTFDKMVPQF-----KQHVKAAV 379

Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
           L G     L+++L ++   ++   + +D            GD++++    +S        
Sbjct: 380 LFGQTADLLEESLQKAGVKNITKVDNLDEAVPAAYHYSDSGDIILLSPANASWDQFKTFE 439

Query: 453 -NSCGFYRLINLLLEEFP 469
                F + +  L  +  
Sbjct: 440 QRGDEFIKDVEKLTHKQE 457


>gi|325204179|gb|ADY99632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240355]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 121/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTT   ML  
Sbjct: 79  VVEAILNLGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTIASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKKAGHVAWSLMGGHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   D+ TA +ALS F   + R +             F     +       ++  +
Sbjct: 299 AAARHAGVDIQTACEALSTFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M      S                  V+    G      +
Sbjct: 359 GNARILAVLEPRSNTMKLGTMKSALPESLKE------------ADQVFCYAGGVDWNVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|293391356|ref|ZP_06635690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951890|gb|EFE02009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 434

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/355 (17%), Positives = 122/355 (34%), Gaps = 39/355 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  +       +   I+AITGS GK+T   ++     +             +IG+P    
Sbjct: 92  LGDI-ELFCREADKPIVAITGSNGKSTVTTLVAEMAKAAGLRVGMG----GNIGIPALSL 146

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D  + EL    L      T+ ++   A +  +   H++ +  +++   AK  I+
Sbjct: 147 -LNQQYDLYVLELSSFQL----ETTYSLKAVAATVLNVTEDHMNRYMDLQDYRHAKLNIY 201

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +       +                  +   SFG+    +      K  + ++++  
Sbjct: 202 NHCQTAVINAEDA--------LTLPATQRPQKQVSFGE----NHADYWLKTENNKTYLMA 249

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +           G H   N L  + +      ++     AL  F   E R +    A 
Sbjct: 250 YDEAVLACDEMKLTGRHNYMNALAAIALAQAAGINLTGIRTALCAFGGLEHRFQVAHIAD 309

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   N  S  AA++ L        G+   +LG   +  + S     +LA 
Sbjct: 310 GV---RWINDSKATNVGSTVAALTGLQV-----AGKLHLLLGGDGKGADFS-----ELAR 356

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +++  +I+  +  G     L     +S      +TM+     I+  L  GD+V++
Sbjct: 357 LINQPHIN-CYCFGRDGKQLAALSSQS---QLFDTMEHAIAAIRPQLQAGDMVLL 407


>gi|255533212|ref|YP_003093584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
 gi|255346196|gb|ACU05522.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pedobacter
           heparinus DSM 2366]
          Length = 447

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/383 (15%), Positives = 109/383 (28%), Gaps = 46/383 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      +KA  I ITGS GKTTT  +    L +             +IG        
Sbjct: 96  EFAKRY---TKAKTICITGSNGKTTTTMLTYHILKNAGLNV----GLAGNIGHSFAAQVA 148

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
             D D+ + E+    L       +  +  IAV+  I P HL  +   +   A++K  I +
Sbjct: 149 SADFDWYVLEISSFMLD----DMYDFKADIAVLLNITPDHLDRYDYKLGNYAASKMRITQ 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                       DD                  +S  K       L   +  +    + + 
Sbjct: 205 NQTSEDIFIYCADDEETLKALKNVKVDSKTYPFSIRKKIEKGAYL---ESNNIHININLN 261

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            Q           G H   N + +  +  +L        +++  F        R      
Sbjct: 262 DQLTMSITELALQGKHNIYNSMASGIVAKVLDIRNTAIRESMGDFK---NIEHRLEHVAR 318

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S   A+  +           I ++G + +  +       D+ + 
Sbjct: 319 ISGVDYINDSKATNVNSTWYALESV-------GTDVILIMGGVDKGNDY------DMLKD 365

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVV---K 450
           +    +  +   G     + +A    + +    T                G+ V++    
Sbjct: 366 MVRQKVKAIVCLGKDNKRIHEAFEDDVEI-IVNTFSAHEAVQVAYHLAKKGNTVLLSPAC 424

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F   +  L
Sbjct: 425 ASFDLFKNYEDRGNQFKAAVKEL 447


>gi|331266779|ref|YP_004326409.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
 gi|326683451|emb|CBZ01069.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase; D-glutamic acid
           adding enzyme, MurD [Streptococcus oralis Uo5]
          Length = 450

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 134/389 (34%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISDAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAQDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L  K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTADDFLVLNFNQDLAKELATKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAADEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D     + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQIIKEILSAFGGVKHRL---QFVDEIKGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAEKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVTYVDATDIADATRKAYELATQGDVVLL 421


>gi|295113830|emb|CBL32467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus sp.
           7L76]
          Length = 456

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 95/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I       +P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFQPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|254292770|ref|YP_003058793.1| UDP-N-acetylmuramate--L-alanine ligase [Hirschia baltica ATCC
           49814]
 gi|254041301|gb|ACT58096.1| UDP-N-acetylmuramate/alanine ligase [Hirschia baltica ATCC 49814]
          Length = 474

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 142/423 (33%), Gaps = 44/423 (10%)

Query: 47  KGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           KG   + GH+   +    GA  ++ +     +    +    G+  V  A N LA   R++
Sbjct: 53  KGARIFIGHE-AENVANAGAV-IISSAIKAGNPEVDAARAAGIPVVRRA-NMLAELVRMK 109

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                + + G+ GKTTT  M++  L +       I     +              D+ + 
Sbjct: 110 W---TVCVAGTHGKTTTTTMVSSLLDAADIDPTVINGGIVN---AYGSNAKAGAGDWMVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S           + P  A++T I P H+ ++  +E + +A     E +   G   L
Sbjct: 164 EADES-----DGTFTKLSPTAAIVTNIDPEHMEHYGSMENLRAAFDTFVENIPFYGFAVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-------LQG 278
             D    + L ++          ++G ++ AD +    +   + +  ++           
Sbjct: 219 CTDHPEVQALASRIVDR---RRITYGFNRQADVRAVNLRTDLKGAHFDIALRRPGSATPR 275

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR--------- 329
                     G H  QN L  + +   L A  D  +  LS F   + R            
Sbjct: 276 MIKGATLPMAGDHNVQNALAAVTVALELGASDDQILAGLSGFGGVKRRFTPAGEWEIEAG 335

Query: 330 ---YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               R   + G   +  E+      SM+    V++   PH   R   +  +     +++ 
Sbjct: 336 KEPVRIIDDYGHHPVEIEAVLKAARSMQGQGGVIAVAQPHRYSRLNDLFSEFSTCFDMAD 395

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG 444
              I          I      G +   L  ++ +  H  V   E+++ L   I++    G
Sbjct: 396 IVLIPPVYEAGETPIE-----GINHETLVKSIRQHGHKDVGILESLEALPEAIKAYAKPG 450

Query: 445 DVV 447
           D+V
Sbjct: 451 DMV 453


>gi|261392542|emb|CAX50097.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           8013]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 117/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGEVNADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +  D+ TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL     V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKA------------ALPASLKEADQVFCYAGGADWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|83592285|ref|YP_426037.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
 gi|109892732|sp|Q2RVU5|MURC_RHORT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83575199|gb|ABC21750.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodospirillum rubrum ATCC
           11170]
          Length = 481

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 82/442 (18%), Positives = 137/442 (30%), Gaps = 54/442 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VV+++ + AS             V  V  A   L    RL+   
Sbjct: 59  GHK----AANLGDAQVVVISSAVKASNPEVMDARARFLPV--VRRA-EMLGELMRLKWS- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++   L +       I     +              ++ + E  
Sbjct: 111 --IAVAGTHGKTTTTSLVAQLLDAAGLDPTVINGGILN---ARGTNAYLGTGEWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I+++T I P HL  +   +++  A       L   G   +  D
Sbjct: 166 ES-----DGTFTKLPATISLVTNIDPEHLDFYGTFDKVREAFRAFIHNLPFYGFACMCID 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-------LQGKSM 281
               + +  +     I    ++G S  AD +          +  +V              
Sbjct: 221 HPEVQAMIPQLQDRKII---TYGLSPQADIRGANVTLGPRGARFDVILTDRAGGGSRTIE 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H   N L  +GI + +  D       L  F   + R  R   A        
Sbjct: 278 GIRLPMYGRHNVLNALGAIGIAAEMGIDDAVIRDGLYHFEGVKRRFTRTGDAGG----VT 333

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A            V++ + PH   R  ++  D C     +    +  
Sbjct: 334 VIDDYGHHPVEIAAVLKAARDATEREVIAVVQPHRYSRLNSLFEDFCTCFNDADQVVVAD 393

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                   I      G    AL + L       VH       L   I      GD+VV  
Sbjct: 394 VYAAGEQPI-----PGASKEALAEGLKVHGHKSVHVLTNEQALPELIARIAKPGDLVVCL 448

Query: 451 SSNSCGFYRLINLLLEEFPAIQ 472
            + S   +   N L ++  A+Q
Sbjct: 449 GAGSISTW--ANALPKQLEAVQ 468


>gi|293365023|ref|ZP_06611740.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307702267|ref|ZP_07639227.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|291316473|gb|EFE56909.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
 gi|307624280|gb|EFO03257.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           oralis ATCC 35037]
          Length = 450

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 134/389 (34%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A II ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L  K+ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELATKTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                            Q +      E   +  + +           G H  +N L T+ 
Sbjct: 239 ----------TVVPFSTQEKVDGAYLEDGQLYFRGEVVMAASEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D  T  + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGVDNQTIKETLSAFGGVKHRL---QFVDEIQGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|238918679|ref|YP_002932193.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella ictaluri
           93-146]
 gi|238868247|gb|ACR67958.1| UDP-N-acetylmuramate--alanine ligase, putative [Edwardsiella
           ictaluri 93-146]
          Length = 491

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 139/408 (34%), Gaps = 49/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 134 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   L  DD     L  
Sbjct: 189 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S++AD ++ +++QC  + ++   +     + V  +  G H A N 
Sbjct: 246 RV----GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
                + S    D +  ++AL  F     R         +   N+    ++ + Y  +P 
Sbjct: 302 AAAAAVASEEGIDDEAILRALDRFQGTGRRFDFLGEFSLQHVNNRPGRVMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 362 EVDATIKAARAGWPDR----RLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAG 417

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     +L  ++     +          L   +   L +GD+++
Sbjct: 418 EHPIPGADSRSLCRSIRGRGKLDPVLVSDPATLAQTLAQFLQEGDLIL 465


>gi|153940015|ref|YP_001392902.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum F
           str. Langeland]
 gi|166222975|sp|A7GJE2|MURC_CLOBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152935911|gb|ABS41409.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295320879|gb|ADG01257.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum F str.
           230613]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 129/388 (33%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGNLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKDGDLIL 441


>gi|255325343|ref|ZP_05366449.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
 gi|255297908|gb|EET77219.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           tuberculostearicum SK141]
          Length = 487

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 126/421 (29%), Gaps = 41/421 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV    D+L AL +             + + G+ GKT+T  M   A+
Sbjct: 86  DNPELVAAKDNDIPVIRRSDLLAALME---------GHKQVLLAGTHGKTSTTSMTVSAM 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +          +            +  + E   S    +R+      P +AV+
Sbjct: 137 QHAGLDPSFAIGGQ----LNRAGTNAHGGTGEAFVAEADESDASLLRYS-----PDVAVL 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTI P HL  F   E       +  + +       +   +        +        + +
Sbjct: 188 TTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAGERALERGINVVA 247

Query: 250 FG--KSKNADFQLRKWKQCSEQSWMEVQLQG---------KSMEVVHHGIGYHMAQNMLM 298
           +G  +           +   E++  E              +++       G+HM  N + 
Sbjct: 248 YGSAEKSFTSTVPLAAELVREETTAEGMDTTVKLDLPGVSETVRYELQIPGHHMVLNSMG 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L    +         + L+ F     R +       QG    + + Y  +P  + A + 
Sbjct: 308 ALIAGVLSGGAPAAIAEGLADFSGVRRRFEYRGSVDKQGKPVRVFDDYAHHPTEVAAVLR 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
                          +      +   +  F  + A+ LSL + + V            G 
Sbjct: 368 AARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVVLDIYGAREQPVEGI 427

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               + D +P  + V +          + S +  GDVV+   + S     +   +L+E  
Sbjct: 428 TSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSVTM--VAAEILDELR 485

Query: 470 A 470
           A
Sbjct: 486 A 486


>gi|294674970|ref|YP_003575586.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
 gi|294473470|gb|ADE82859.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           ruminicola 23]
          Length = 443

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 113/372 (30%), Gaps = 43/372 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            + +I ITGS GKTTT  ++                   +IG  L L       ++ I E
Sbjct: 101 DSKMICITGSNGKTTTTSLIYHIFKEAGYD----AGLAGNIGNSLALQVAEDPHEYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R  IA++  I P HL  ++  ++    AK  I +          
Sbjct: 157 LSSFQLD----NMYDFRADIAILLNITPDHLDRYNFEMQNYVDAKMRIIQNQTDKDAFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +    K     I+  +S  K K     + + K   E+            +   
Sbjct: 213 WADDPIIKRELEKYDIHSIQYPFSELKEKGVIGYIEEGKYKIEK-----PEPFNMEQESL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L       I     +   K+LS F   E R               I++S
Sbjct: 268 SLTGKHNIYNSLAAGIAADIAGIKKEEIRKSLSDFPGVEHRL---EKVCTVRGVQYINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +         + I ++G     G+   + +  + + L     S + 
Sbjct: 325 KATNVDACWYALEAMKT-------KVILIIG-----GKDKGNDYEPI-KPLVKEKCSGIV 371

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     L D      I V  + +M             G+ V++    +S         
Sbjct: 372 YLGADNQKLHDNFDNLGIPVRDTHSMKECMEACYEMAKPGETVLLSPCCASFDLFKNMED 431

Query: 453 NSCGFYRLINLL 464
               F  +   L
Sbjct: 432 RGEQFKTIARSL 443


>gi|257465205|ref|ZP_05629576.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
 gi|257450865|gb|EEV24908.1| UDP-N-acetylmuramate--L-alanine ligase [Actinobacillus minor 202]
          Length = 475

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 145/428 (33%), Gaps = 50/428 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV ++ +  S   ++      IPV        A   LA   R R     IAI G+ 
Sbjct: 77  GASVVVASSAIDESNPEVAAAKEARIPVIQ-----RA-QMLAEIMRFRHG---IAIAGTH 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+++  +  K     +                     + I E   S    +  
Sbjct: 128 GKTTTTAMISMIYTEAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH- 183

Query: 178 LTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               ++P ++V+T I P H+  +    E++          L   G   +  DD     + 
Sbjct: 184 ----LQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLRNLPFYGLAVMCADDETVMEIA 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            K      + + S+G S+ AD+++  ++Q   +  +  V   G+ +EV+ +  G H A N
Sbjct: 240 PKV----GRQVISYGFSEKADYRIEDYQQTGFQGHYTVVCPTGERIEVLLNVPGRHNALN 295

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-- 353
               L +        +  + AL+ F     R  +    +      ++ + Y  +P  +  
Sbjct: 296 ATAALAVAKEEGIANEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVDV 355

Query: 354 --------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                        V+    PH   R   +  D  ++     +  +          I    
Sbjct: 356 TIKAARQGWENKRVVMVFQPHRYSRTRDLFDDFVQVLSQVDALIMLNVYAAGEAPI---- 411

Query: 406 LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGFYRLIN 462
             G     L  ++     V          L   +   + DGD+++ + + N     R   
Sbjct: 412 -VGAESKDLCRSIRTLGKVDPILVSDTSQLGEVLDQIIQDGDLILAQGAGNVSKLSR--- 467

Query: 463 LLLEEFPA 470
            L E + A
Sbjct: 468 DLAESWKA 475


>gi|238916668|ref|YP_002930185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
 gi|259509787|sp|C4Z534|MURD_EUBE2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|238872028|gb|ACR71738.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           eligens ATCC 27750]
          Length = 450

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/409 (18%), Positives = 142/409 (34%), Gaps = 52/409 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +++ +V +  +  IPV+G         +LA       K  IIAITG+ GKTTT  ++   
Sbjct: 80  IDSPIVLTFKNAGIPVWG-------EIELAYNY---DKGKIIAITGTNGKTTTTALVGQI 129

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +++  +    +G+  N     +       +  + + E+    L  +        P ++ I
Sbjct: 130 IAAYNEKTFVVGNIGNSYTGEVLKTS---EDSYTVAEISSFQLETVHEFH----PIVSAI 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL+    +E  A  K  I E   K  T  LN +D +      +     +    S
Sbjct: 183 LNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNLEDKYLTDFAPEC-KANVVWFSS 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             K     +   +  + ++ +     L    M ++    G H  +N+   + +       
Sbjct: 242 ERKPSVGAYVDGEMIKYTDGTNDYDMLNVHDMNLL----GKHNYENVCAAIAMTKAAGIP 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D  I+ +  F   E R         +      ++S   NP +   AI  +         
Sbjct: 298 DDIIIEQVKKFKAVEHRI---EYVATKNGVDYYNDSKGTNPEAAVKAIEAM--------- 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYS 427
               V   +   G   +    DL        +  + L G     + D   +    ++ Y+
Sbjct: 346 ----VKPTILIGGGYDKGSEFDLYVKAFKDKVKLLVLIGQTSAKIADTCKKYGFENIEYA 401

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++M+ +      + V GD V++    +S             F  L+N L
Sbjct: 402 DSMEQVVDICAKNAVSGDAVLLSPACASWGMFDNYEQRGRIFKDLVNNL 450


>gi|89897956|ref|YP_515066.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           felis Fe/C-56]
 gi|122063241|sp|Q255W7|MURD_CHLFF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89331328|dbj|BAE80921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           felis Fe/C-56]
          Length = 419

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 124/411 (30%), Gaps = 78/411 (18%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +  +V       IP+  V DV     +LA  +    +   + ITGS GKTTT   L   
Sbjct: 71  TSHPLVIEAKRRDIPI--VTDV-----QLAFQSPEFYQYPSLGITGSTGKTTTVLFLVHL 123

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S+  +         +IG P+    +      G+  + +S          +     A I
Sbjct: 124 LHSLGIS----AFAMGNIGFPI----LQAMYQKGVRVVEISSFQLTEQEQKIPVLSGAAI 175

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+  HL     +   + AK  I + L+   +++                        S
Sbjct: 176 LNISENHLDYHQTLHAYSEAKMNIAKCLQWPDSLW-------------------SGEGVS 216

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+S     +          +   + L  ++     + +   +    L            
Sbjct: 217 SGRSYLEYTEEIDSVLDKGGALKPLYLHDRNNYCAAYALAKEVTSVPLEAFLQAVQTFEK 276

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               I                     +     I++S     +S++ A+  + +       
Sbjct: 277 PPHRI----------------EYLGEKDGVRYINDSKATTMSSVEKALMAVKE------- 313

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             I ++G     G   +S    L  VL+   + H+   G     +  AL  S+ +  +  
Sbjct: 314 NVIVIMG-----GRNKESNFTSLIPVLTQT-VKHIVAMGECRKEIAQALSSSLPLTQARD 367

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI---NLLL 465
           +       QS    GDV+++    +S             F +L+     L 
Sbjct: 368 LQEAVSIAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFRQLVGDMEALK 418


>gi|307704498|ref|ZP_07641406.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
 gi|307621911|gb|EFO00940.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           mitis SK597]
          Length = 450

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 69/346 (19%), Positives = 125/346 (36%), Gaps = 36/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGI 164
           S+A I+ ITGS GKTTT  M+   L++  +     G  + +IG P +   +   D D  +
Sbjct: 110 SEAPIVGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  ++       P IAVIT + P H+      EE  +AK  I   +     + 
Sbjct: 166 MELSSFQLMGVQEFH----PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLV 221

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LN++    + L +K+ A  +     F   +  D          E   +  + +       
Sbjct: 222 LNFNQDLAKELASKTQATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANE 271

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  +N L T+ +  +   D  T  + LS F   + R    +           ++
Sbjct: 272 IGVPGSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDEIKGVKFYND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S + N  +          +S     + I + G     G    +   +L   +    +  +
Sbjct: 329 SKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKKM 375

Query: 405 WLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
            + G     +K A  ++   +  +  +             GDVV++
Sbjct: 376 VILGQSAERVKRAADKAGVSYVDATDIADATRKAYELATQGDVVLL 421


>gi|160871628|ref|ZP_02061760.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
 gi|159120427|gb|EDP45765.1| UDP-N-acetylmuramate--alanine ligase [Rickettsiella grylli]
          Length = 471

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 85/420 (20%), Positives = 156/420 (37%), Gaps = 49/420 (11%)

Query: 52  DGH--DFILHAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
            GH   +I  A      ++V    V+ D V    +    +  V     AL  LA   R R
Sbjct: 63  HGHHEKYIRDA-----DVIVYSSAVSCDNVEIQAARHALIPVVP---RAL-MLAEIMRFR 113

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++   L         +     +               + + 
Sbjct: 114 YS---IAVAGTHGKTTTTSLVASLLGEGGLDPTFVIGGKLNST---RTHARLGSGRYLVA 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S           ++P IA++T I   H+  +    +++  +  E    L   G   
Sbjct: 168 EADES-----DASFLYLKPMIAIVTNIDRDHMGTYSGNFQQLKKSFLEFLWHLPFYGLAV 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEV 283
           L  DD F   +           I ++G S++AD ++  ++Q   +  +  ++ + K M++
Sbjct: 223 LCCDDPFIRSILPDIMRP----ILTYGFSEDADIRITSFQQKEIKNYFRVLRPKKKPMDI 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           + +  G H A N L  + + S L    D   KALS F   + R +       +    L+ 
Sbjct: 279 ILNLPGEHNALNALAAIAVASELGIKNDVICKALSHFSGVDRRFQVLGKLTCKHGDALLI 338

Query: 344 ESYNANPA----------SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           + Y  +P                  ++    PH   R   +  D  ++  LSQ  H+ L 
Sbjct: 339 DDYGHHPREIAATLKAIRHAWPDRRLVMTYQPHRYTRTRDLFSDFVKI--LSQVDHLLL- 395

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             L++Y      +SG    AL  ++  +  +   + E  + L   +   + DGDV++++ 
Sbjct: 396 --LNVYAAGEAVISGADSAALLKSIHLNKQINPIHIEDKEKLMSILDEIIQDGDVLLLQG 453


>gi|312952735|ref|ZP_07771597.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|310629251|gb|EFQ12534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0102]
 gi|315153069|gb|EFT97085.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0031]
          Length = 456

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 95/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +        +     D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFNYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|239813927|ref|YP_002942837.1| UDP-N-acetylmuramate--L-alanine ligase [Variovorax paradoxus S110]
 gi|259509785|sp|C5CNF5|MURC_VARPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239800504|gb|ACS17571.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus S110]
          Length = 485

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/429 (17%), Positives = 134/429 (31%), Gaps = 40/429 (9%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA     GA  VV +T + +            IPV         +  LA   RL+  
Sbjct: 54  FVGHAAAHIDGADAVVTSTAVQSDNPEVLAAREKRIPVV----PRALM--LAELMRLKQG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++   L +       +     +              D+ + E 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIGGRLNS---AGANAQLGSGDYIVVEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLN 226
             S    +  L     P +AV+T I   H+  +     ++  A  +    +   G   L 
Sbjct: 162 DESDASFLNLL-----PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLHRMPFYGVAILC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     + A+         +       A        Q    +     +    + +V +
Sbjct: 217 TDDPAVRDIVAEVTCPVTSYGFGEEAQVRAIDVRAVGGQMHFTAQRRNGVTLPDLPIVLN 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N L  + +   L    +   + L+ F     R + Y     QG         
Sbjct: 277 LPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGEVAAQGEPAGSFTVI 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
           +          + ++       GR   VL         ++    D  +V+   +      
Sbjct: 337 DDYGHHPVEMAATIAAARGAFPGR-RLVLAFQPHRYTRTRDCFEDFVKVIGNADAVLLGE 395

Query: 404 VWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V+ +G           L  AL  +  V   + + +  +   I  +   GDVV+   + S 
Sbjct: 396 VYAAGEPPIVAADGRTLARALRVAGKVEPVFVDDIGAMPQAILDNARAGDVVLCMGAGSI 455

Query: 456 GF--YRLIN 462
           G    +++ 
Sbjct: 456 GAVPGKVVE 464


>gi|78042912|ref|YP_360890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|122063239|sp|Q3AAE4|MURD_CARHZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77995027|gb|ABB13926.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 451

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 78/450 (17%), Positives = 139/450 (30%), Gaps = 80/450 (17%)

Query: 61  VQKGAGLVVVNT-------DMVASIGSLSIPVFG-----VDD------------------ 90
           +++GA +V+ +        + +  +    + +       V D                  
Sbjct: 27  IKRGAKVVLTDKKMSLPVDEELKKLAEEGVELVLGGYPLVKDWELLVVSPGVPLTEEPIA 86

Query: 91  -VLG----ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
             L      L ++   A    KA IIA+TG+ GKTTT   +   L               
Sbjct: 87  YSLKEGIPVLGEI-ELAYKELKAPIIAVTGTNGKTTTTSWIGEVLKIAGF----KTLIAG 141

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG P  +  +  + D    E+    L          +P +AV+  + P HL     +E 
Sbjct: 142 NIGYP-LIEAVEEEWDAVSLEVSSFQL----ETIKSFKPKVAVLLNLTPDHLDRHKTLEG 196

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              AKA IF   ++T    LNYDD     L  K+               +   +L +   
Sbjct: 197 YLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRV--------FYFSQKEELEEGVF 248

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +   +   L  +   +    +      N+   L  V+   +   +           +G
Sbjct: 249 VKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSFGVSGKNIERGLRNFQG 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R            +++S   NP S   A++   +      G            G   
Sbjct: 309 VAHRLEKVAEINGVLYVNDSKGTNPDSTIKALNSYERPIVLIAG------------GRNK 356

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVD 443
            +   +LA  +    +    L G     LK+AL          +E+ +      +     
Sbjct: 357 GNSFGELAREIRE-KVRFTILVGECREELKEALEMVGYDKYVVAESFEDAVKKAKELARP 415

Query: 444 GDVVVVK---SS---------NSCGFYRLI 461
           GDVV++    +S             F RL+
Sbjct: 416 GDVVLLSPAAASWDMFKNYEERGELFKRLV 445


>gi|78065168|ref|YP_367937.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
 gi|77965913|gb|ABB07293.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. 383]
          Length = 449

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 122/369 (33%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++ +    G     + +   ++    D  F + E   
Sbjct: 93  VLAVAGTHGKTTTSSMLA---WLLEDSGLNPGFLIGGVPLNFGVSARLTDSSFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 150 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 210 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVTWQV 266

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 267 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSVDGVTVYDDFA 322

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 323 HHPTAIETTIAGLRARIGSENARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 376

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL       H  + +  L   + ++   GD V+V  SN  GF
Sbjct: 377 FGYGAPTGRDALGWNLAEALAPLGEKAHAFDDLHLLVKSVVAAARPGDHVLV-MSNG-GF 434

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 435 GGVHQKLLD 443


>gi|257899138|ref|ZP_05678791.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
 gi|257837050|gb|EEV62124.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com15]
          Length = 453

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           PHIAVIT I  AH+      +E   AK  + + +   
Sbjct: 164 DKIVMELSSFQLM----GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLVLNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDHAIYYRKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L +FH    R    +         
Sbjct: 271 EISELGVPGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G         L        
Sbjct: 328 FYNDSKATNILATKMALSGFETAKV-------VLLAGGLDRGNTFDELVPSL------KG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDV+++    +S   
Sbjct: 375 IKAMIVFGQTKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNQLK 453


>gi|149010691|ref|ZP_01832062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
 gi|147765172|gb|EDK72101.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP19-BS75]
          Length = 450

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   +   D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+      EE  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGLFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|154496371|ref|ZP_02035067.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
 gi|150274454|gb|EDN01531.1| hypothetical protein BACCAP_00659 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/466 (13%), Positives = 122/466 (26%), Gaps = 51/466 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           +       V  +S DS+++ P   F   KG  +    ++L A +KGA + V         
Sbjct: 30  LHADLTREVRLVSCDSQTVVPGTLFIC-KGAAFKP-QYLLDAAEKGAFVYVSERRWPE-- 85

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
              ++P   V D+  ++  LA  A       +     +  K  T     +     +   +
Sbjct: 86  --CALPCILVSDIRRSMALLADRAWNHPSGRLHITGITGTKGKTTTAYFLKSMLDEWRRS 143

Query: 139 CIGS-------YNNHIGV-----------PLTLARMPVDVDFGIFE---LGMSHLGEIRF 177
                           GV           PL L R   +      E   + +S       
Sbjct: 144 QGKRESAILSTMITDDGVERRPAKLTTPEPLDLQRHLWNAAECGAEYLTMEVSSQALKYH 203

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            T  V   + V   I   H+S     +      +++    +          D    +L A
Sbjct: 204 RTGGVEFSVGVFLNIGEDHISPVEHPDFEDYFASKLMIFRQSAAACVNLDSDFAERILTA 263

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 I T  +  K   AD    + ++  + +   V+    + E+     G    +N L
Sbjct: 264 AESCSKIYTFST--KFSTADIYASEIRRDGDATRFLVRTPRYTRELSMGLPGSFNVENAL 321

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +     L          L+                                 +  +  
Sbjct: 322 AAVAAAEALGVPESAVAAGLAEATVPGRMETFNTPDGKLTVIVDYA-------HNGMSLE 374

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
           ++LS +     GR++ VL      G         + +  +      + L+          
Sbjct: 375 ALLSSVRREFPGRQLTVL--FGCTGGKGLDRREGMGQ-AAGRWADRIILTEDDPGPEEVP 431

Query: 413 ALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            +   +                 +              VVV+  K 
Sbjct: 432 DICADIGGYIAPFGKTWTVIPDREEAVERAILEAHTPAVVVLAGKG 477


>gi|83589692|ref|YP_429701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
 gi|118595666|sp|Q2RK81|MURD_MOOTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83572606|gb|ABC19158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Moorella
           thermoacetica ATCC 39073]
          Length = 455

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 116/382 (30%), Gaps = 41/382 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
              +A   +  IPV+         ++L +A RL      ++AITG+ GKTTT  +    L
Sbjct: 80  EPPLARARARGIPVW---------SELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRIL 130

Query: 131 SSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IG+P +   +      + + E+    L           P +A I
Sbjct: 131 QEAGW----PAVVGGNIGIPLVKELQEIAPGSYVVCEVSSFQL----EAITSFHPQVAAI 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL     +E   +AKA +    E      LNYDD     L     A      +S
Sbjct: 183 LNITPDHLDRHGSLENYIAAKARVMAYQEARDFAILNYDDPHTRSLA--GGARSRVLFFS 240

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +       L     C +             E+   G       N+  ++    +  A 
Sbjct: 241 RRERPPLGAWLEDGVICCDLGAGGTVKLCHCEELSLKGSH-----NLENSMAAALVALAL 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +             R            I++S   NP +   AI+           
Sbjct: 296 GVDPEQLTRTLKTFPAVPHRLEPVAEINGVCYINDSKGTNPEATMKAINAY--------S 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYS 427
             + ++      G         +A       + H+ L G     L+ A  ++    ++ +
Sbjct: 348 NPLVLIAGGRNKGSDFTLLAQQMAGR-----VKHLVLVGEAARELEQAARKAGIDSIYLA 402

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
                       +   GD+V++
Sbjct: 403 PDFASAVREAAGAARPGDIVML 424


>gi|332686272|ref|YP_004456046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
 gi|332370281|dbj|BAK21237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Melissococcus
           plutonius ATCC 35311]
          Length = 455

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 111/375 (29%), Gaps = 47/375 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIF 165
              II ITG+ GKTTT  M+   L +             +IG P   + +     D  + 
Sbjct: 110 DCPIIGITGTNGKTTTTMMIQQILDA--GRQQGKARLAGNIGYPASEITQHATKDDLLVM 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +        P +AVIT I  AHL      E   SAK +I + +E+   + +
Sbjct: 168 ELSSFQLLGVSSFY----PTMAVITNIYEAHLDYHKTRENYVSAKWQIQQNMEQEDQLII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N++      +             +                      +  + +        
Sbjct: 224 NWNQPELREMVK----------TTRATVVPFSTYEVVNGAYLLNETLYFKDEIIMSVDEL 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  + +  +     ++  + L  F     R    +           ++S
Sbjct: 274 GVPGNHNIENALAAICVAKLYNIANESIRETLHRFSGVAHRT---QYIDTIKQRKFYNDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + K A+S            ++ +L    + G            +  L ++  + 
Sbjct: 331 KATNILATKMALSGF-------PSNQLILLAGGLDRGNDFDEL------IPVLKDLKGIV 377

Query: 406 LSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
           L G     L+     +  +    +  M              D +++    +S        
Sbjct: 378 LFGETKEKLRKIAKNAGVLIIKTAANMTDAVREAFEISQKNDTILLSPACASWDQYPNFE 437

Query: 453 -NSCGFYRLINLLLE 466
                F + +  L E
Sbjct: 438 IRGEAFIKAVEQLKE 452


>gi|189029215|sp|A5CD22|MURC_ORITB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 490

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 135/408 (33%), Gaps = 38/408 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAG+VV+++ +  +       +     ++     LA   R +     IAI+GS GKTTT
Sbjct: 71  NGAGIVVISSAIKHNNPEYQAAILAKIPIISRAEMLAELMRSKVA---IAISGSHGKTTT 127

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++     +              I           D D+ I E   S           +
Sbjct: 128 TALIACIFEA---CGLHPTVITGGIMNNRATNAYLGDGDYFIAEADES-----DATFIKI 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAVIT I   HL  +   + + SA  +    L   G      DD   + L AK  + 
Sbjct: 180 PATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQNLIAKITSR 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-----MEVQLQGKSMEVVHHGIGYHMAQNML 297
            I T     K+ +                          +    +V    +G H   N L
Sbjct: 240 KIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLPALGKHNILNSL 299

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I   L  D++        F     R       + +     + + Y  +PA + A I
Sbjct: 300 AAIAIAVELNLDLNIIKDGFKNFKGIARRF----TKIGEYNNITVIDDYAHHPAEIIATI 355

Query: 358 SVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV- 411
                I+   +GR IAV        + ++   S+  H    + +    IS ++ +G    
Sbjct: 356 DTARCIADKQQGRVIAVFQPHRYSRLKQL--FSEFTH--CFQRVDQLYISQIYDAGEQET 411

Query: 412 -----LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKS 451
                ++L +A+    H  Y      +D L   I   +   D++++  
Sbjct: 412 YNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPCDIILLMG 459


>gi|134294696|ref|YP_001118431.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
 gi|134137853|gb|ABO53596.1| UDP-N-acetylmuramate [Burkholderia vietnamiensis G4]
          Length = 461

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 118/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   + + G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPRVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSQAQRVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +          +L     +   S +  + + +     SL +   V
Sbjct: 335 HHPTAI---ETTIAGLRARIGREHSRIL---AVLEPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL       H  + +  L   + ++   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWNLGDALAPLGAKAHAFDDLHLLVKAVVAAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQQLLD 455


>gi|303327350|ref|ZP_07357791.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
 gi|302862290|gb|EFL85223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Desulfovibrio
           sp. 3_1_syn3]
          Length = 434

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 110/383 (28%), Gaps = 68/383 (17%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++ +A R      ++A+TG+ GKTTT  +    L +   T         +IG PL+  
Sbjct: 106 LAEMELAWRYLDDEPVLAVTGTSGKTTTASLAAAMLQAQGYTVFLG----GNIGTPLSEY 161

Query: 155 RMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     D  + E+    L           P   V+  I P HL     + E   A    
Sbjct: 162 VLSGRKADVLVLEISSFQL----QACSTFCPRAGVLLNITPNHLDYHKDMAEYTEA---- 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
                                         +      G        L    Q        
Sbjct: 214 ---------------------------KFRLFRCQDEGDLAVLGADLHDPAQGFNLRARR 246

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V ++           G H   N                 A +A++ F P   R       
Sbjct: 247 VWVRASERFPQSGLPGAHNKFNEEAAWQACRFFGVSEANAARAVARFKPLPHRL---ELV 303

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +     +++S     +S+K A+                + G   + G+L+      L 
Sbjct: 304 RERCGVLYVNDSKCTTVSSLKVALQAFD-------RPLRLLCGGKFKGGDLAA-----LG 351

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--- 450
            ++    +  V L G      + A      + +   ++     + +S  +GDVV++    
Sbjct: 352 GLIRER-VREVALFGASREHFETAWQGLAPISWHPVLEEAVRALSASAQEGDVVLLAPAT 410

Query: 451 ---------SSNSCGFYRLINLL 464
                     +    F R+++ L
Sbjct: 411 SSFDLYDNYMARGDDFKRIVSKL 433


>gi|227550457|ref|ZP_03980506.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257897140|ref|ZP_05676793.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|293377364|ref|ZP_06623568.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
 gi|227180358|gb|EEI61330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium TX1330]
 gi|257833705|gb|EEV60126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecium Com12]
 gi|292644056|gb|EFF62162.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecium PC4.1]
          Length = 453

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 103/319 (32%), Gaps = 43/319 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           PHIAVIT I  AH+      +E   AK  + + +   
Sbjct: 164 DKIVMELSSFQLM----GITDFHPHIAVITNIYEAHIDYHGTRKEYVKAKWNLQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN++ S  + L  ++ A  +           +  ++ +    ++   +  + +   
Sbjct: 220 DYLVLNWNQSELQELAQRTKARVLP---------FSTKEVLEDGVYADDHAIYYKKEKIM 270

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   + L +FH    R    +         
Sbjct: 271 EISELGVPGTHNVENALAAITVAKLYGVSNEAIRQTLHLFHGVPHRT---QYVGEIQGRK 327

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + K A+S               +L    + G         L        
Sbjct: 328 FYNDSKATNILATKMALSGFETAKV-------VLLAGGLDRGNTFDELVPSL------KG 374

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS--- 452
           I  + + G     L DA  ++    +  +++++        +  DGDV+++    +S   
Sbjct: 375 IKAMIVFGQTKEKLIDAGKKAGIETIVTADSVEQAVPLALENSTDGDVILLSPANASWDQ 434

Query: 453 ------NSCGFYRLINLLL 465
                     F   +N L 
Sbjct: 435 YPNFETRGNRFMEAVNQLK 453


>gi|167036589|ref|YP_001664167.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115016|ref|YP_004185175.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855423|gb|ABY93831.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928107|gb|ADV78792.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 464

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 132/403 (32%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP+    D    L  +    +       IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPII---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +++     +                 +         ++ + E       E   
Sbjct: 119 GKTTTTSLIS---VILDGMEFDPTVLVGGEVDVIGGNVRVGSSEYFVTEAC-----EYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  ++L D    G    +  I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFA--GSFDNADKIIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|256960177|ref|ZP_05564348.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|293382542|ref|ZP_06628476.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|293387857|ref|ZP_06632396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|312906855|ref|ZP_07765852.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|312978890|ref|ZP_07790616.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
 gi|256950673|gb|EEU67305.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Merz96]
 gi|291080090|gb|EFE17454.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis R712]
 gi|291082704|gb|EFE19667.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis S613]
 gi|310627109|gb|EFQ10392.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 512]
 gi|311288327|gb|EFQ66883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis DAPTO 516]
          Length = 456

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 96/320 (30%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L  F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S         E +++ +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGF-------ENQKLLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|294632042|ref|ZP_06710602.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
 gi|292835375|gb|EFF93724.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. e14]
          Length = 463

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 145/423 (34%), Gaps = 48/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ +      L       IPV    D L AL
Sbjct: 49  ALRAQGATVHIGH--AAEHLADDASCVVVSSAIRQDNPELVRAAELGIPVVHRSDALAAL 106

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++L+++    +     +           
Sbjct: 107 MA---------GLRPIAVAGTHGKTTTTSMLAVSLTALGLNPSYAIGGDLD---APGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +    +  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 155 LHGTGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYESFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L  +    G     ++G+S +AD ++        +S + V 
Sbjct: 210 KIVPGGTLVISADHDGARELTRRL--AGSVRTVTYGESADADVRVLSVVPQGLKSEVTVL 267

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G  +       G H A N +  L     L         AL+ +   + R +       
Sbjct: 268 LDGAELTFAVSVPGRHYAHNAVAALAAGVALGIPAAELAPALAAYAGVKRRLQ----LKG 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ + 
Sbjct: 324 EAAGVQVIDSYAHHPTEMSADLEAM----RAAAGDARILVVFQPHLFSRTQELGKEMGQA 379

Query: 396 LSLYNISHVW---------LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V          + G     + +A       V        +   +      GD
Sbjct: 380 LTLADASAVLDIYPAREDPVPGVTSELIIEAARAAGADVTAVHDKAEVPDVVAGMAKAGD 439

Query: 446 VVV 448
           +V+
Sbjct: 440 LVL 442


>gi|302876578|ref|YP_003845211.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307687253|ref|ZP_07629699.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302579435|gb|ADL53447.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 117/384 (30%), Gaps = 59/384 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                   I AITGS GKTTT  ++   L +             +IG P  T      + 
Sbjct: 111 FIRYCPGKIFAITGSDGKTTTTTLVYEILKTEGYNTWVG----GNIGTPLFTKIEEIKNT 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T  +   ++ +T ++P HL     + E   AK  IF+   + 
Sbjct: 167 DKVVLELSSFQL-----MTIQLPIEVSAVTNLSPNHLDMHKSMNEYIEAKENIFKFQREN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN ++     +K K  A      +S           ++ K          + +   
Sbjct: 222 DLLVLNIENDITYNMKDK--ANSRINFFSSKTEVPQGAYFKENKLYL-------RDKEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            +     +G H  +N+L    + +   +       A +      G   R           
Sbjct: 273 KKEELVLMGMHNVENLLTAFLVTNEDASIESMKKVATTFS----GVQHRSEFIREIDGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++S   +P    A++    +      G          + E G                
Sbjct: 329 YYNDSIATSPTRAVASLKAFDRKVILIAGGYDKHIPFEYLAEEGHE-------------- 374

Query: 399 YNISHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +KD   + I        ++  +T++      +    +GD+V +  
Sbjct: 375 -KIKKLILLGVTKEKIKDVFDKVIKEKTLDLPIYIVQTLEEAAYKAKEIAEEGDIVTLSP 433

Query: 450 -KSS---------NSCGFYRLINL 463
             +S             F  ++  
Sbjct: 434 ACASFDMFANFEIRGNKFKDIVKA 457


>gi|161870032|ref|YP_001599201.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
 gi|161595585|gb|ABX73245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Neisseria meningitidis 053442]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 115/413 (27%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKKAGHVAWSLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSTFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKSALPESLKE------------ADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|309379964|emb|CBX21375.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 71/414 (17%), Positives = 126/414 (30%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGIPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEVNADGSFDVLLDGKKAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   D+ TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDIRTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKA------------ALPASLKEADQVFCYAGGVDWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
             +P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 407 ALVPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHGKLLDALK 458


>gi|306836487|ref|ZP_07469460.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
 gi|304567650|gb|EFM43242.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49726]
          Length = 487

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 126/421 (29%), Gaps = 45/421 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +    +IP+    D+L AL +           T + + G+ GKT+T  M   A+  
Sbjct: 88  PELVAARENNIPLIRRSDLLAALME---------GHTQVLLAGTHGKTSTTSMAVSAMQH 138

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                +          +            +  + E   S    +R+      P IAVIT 
Sbjct: 139 AGLDPSFAIGGQ----LNRAGTNAHGGTGEAFVAEADESDASLLRYS-----PDIAVITN 189

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIYSF 250
             P HL  F   +      A+  + +        +  +D     +  ++ + GI  I   
Sbjct: 190 AEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINVIGYG 249

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----------EVVHHGIGYHMAQNMLMTL 300
           G  K     +      + +      +                      G+HM  N +  L
Sbjct: 250 GAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPGVEESVSYQLQIPGHHMVLNSMAAL 309

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   +  T  + L+ F     R +       QG    + + Y  +P  + A +   
Sbjct: 310 IAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAHHPTEVAAVLRAA 369

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GF 409
                        +      +   +  F  + A+ L+L     V +            G 
Sbjct: 370 RAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQALALA--DAVVVLDIYGAREQPVEGI 427

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               + + +P  + V +          + S    GD+++   + S     +   +L+E  
Sbjct: 428 TSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDIILTIGAGSITL--VAAEILDELR 485

Query: 470 A 470
           A
Sbjct: 486 A 486


>gi|304387552|ref|ZP_07369741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
 gi|304338439|gb|EFM04560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria meningitidis
           ATCC 13091]
          Length = 458

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 119/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +  D+ TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A  +SL +   V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKS------------ALPVSLKDADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|259907415|ref|YP_002647771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           pyrifoliae Ep1/96]
 gi|224963037|emb|CAX54520.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia pyrifoliae
           Ep1/96]
 gi|283477248|emb|CAY73160.1| murD [Erwinia pyrifoliae DSM 12163]
          Length = 438

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 121/349 (34%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQV----GTGGNIGLPALTL-LQQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L     L        A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQLETASSLHA----AAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G             D       +    +W+ VQ +   
Sbjct: 210 VVNADDAMTMPVRGADARCVSFGA------------DVGDYHLTRQQGSTWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                H +G H   N L  L +   +     T++KAL+ F+    R    +         
Sbjct: 258 NTDEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRF---QRVHEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HPAGMLWLLLGGDGKSADFSP-----LTRYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L  AL   + V  +ETM      I + +  GD+V++
Sbjct: 365 I-RIYCFGRDGAELA-ALRPEVAVQ-TETMAEAVQQIATQVQPGDLVLL 410


>gi|331090611|ref|ZP_08339462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
 gi|330401051|gb|EGG80646.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 2_1_46FAA]
          Length = 451

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 102/346 (29%), Gaps = 40/346 (11%)

Query: 134 KKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
            K +        +IG P T       +    + E+    L  +       RP ++ I  I
Sbjct: 131 MKAWKDSVYVVGNIGTPYTSIAAETREDSVIVAEISSFQLETVD----AFRPKVSAILNI 186

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL     +     AK  I +         LNY+D        K+ A  +        
Sbjct: 187 TPDHLDRHHTMRAYIEAKETIAKNQTAEDVCVLNYEDEETRKFGEKTEATVLYFSSRRKL 246

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +    +          +   +             +G H  +N++  + +       VD 
Sbjct: 247 DRGVYLEDGTIIYAENGNRTTICH-----VDELKLLGVHNYENIMAAVAMSLAYHVPVDI 301

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
             +++  F   E R         +      ++S   NP +   AIS + + +    G   
Sbjct: 302 IRQSVKAFGGVEHRI---EYVCEKNGVVYYNDSKGTNPDAAIKAISAMKKPTYLIGG--- 355

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETM 430
                    G    + + +  E      +  + L G     +++   R        +ET+
Sbjct: 356 ---------GYDKNASYEEWIESFD-GKVQKLVLIGQTKEKIEETAKRCGFTDTVLAETL 405

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +           +G+ V++    +S             F  L+N L
Sbjct: 406 EEAVSICAELSREGEAVLLSPACASWGMFKNYEERGDKFKELVNAL 451


>gi|320106156|ref|YP_004181746.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924677|gb|ADV81752.1| UDP-N-acetylmuramate/alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 454

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 128/413 (30%), Gaps = 51/413 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A  + A ++V ++ +  S   +        P+         +  LA   RL+ 
Sbjct: 57  GHD---AANARDADVIVTSSAVAKSNPEVVEARSRKTPIIH----RAEM--LAELMRLKY 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G  GKTTT  M+      +                 L       +  + + E
Sbjct: 108 G---IAIAGMHGKTTTTSMVASV---LAGGGLDPTVVVGGRVNALGSNARLGNSRYLVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P +AV+T +   H+  +  + ++ +A  E  + +   G     
Sbjct: 162 ADES-----DRSFLKLSPILAVVTNLDREHMDAYRDMADVETAFVEFMDRVPFYGATTAC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQGKSMEVV 284
            DD     +  +        + ++G+S +ADF  ++          +             
Sbjct: 217 IDDPMLRAILPRVRR----RVMTYGESPDADFQLRMLPKDSDCHAVFEVNTKGLLLGPFR 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            H  G H   N    + I   L        + L  F   + R +             + +
Sbjct: 273 LHVPGKHNVLNATAAVAIGVELGIAPSQIAEGLEAFRGVDRRFQ----VKGVVRGVTVVD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  ++A +      +      R+ VL         +     + A      ++  V
Sbjct: 329 DYGHHPTEVRATLQA----ARECGYGRVLVLFQPHRY-SRTAELMEEFATAFGDADLVEV 383

Query: 405 W---------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                     + G    AL   + +     Y+ + +     + S   DGDV++
Sbjct: 384 VDIYAANEEPIVGVTAEALVAQM-QGTRAEYAGSFEEAVGRLVSEARDGDVIL 435


>gi|239994437|ref|ZP_04714961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas
           macleodii ATCC 27126]
          Length = 510

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 110/365 (30%), Gaps = 45/365 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++ ITGS GKTT   ++   L +             ++G P  L  +  D D  + EL 
Sbjct: 125 RVVGITGSNGKTTVTLLVNHLLKN----CGVKSIEAGNVGRP-VLEALQSDADVVVMELS 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L        A +  I+  HL     +E    AK  IF+  +          
Sbjct: 180 SFQLETTSSLVL----EAATVLNISDDHLDRHGTLEAYIDAKHRIFDNAKSAVVWRDGEF 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQ------------------------LRKWK 264
            + +E L   +  +      S G+S  A  +                             
Sbjct: 236 VAPYEQLITDAKGIAASNAVSDGESNAASNEESLASKNIVEYGLGESTTGFAIASFDGDD 295

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +              +    I      N+L  +  + I      +   A+      +
Sbjct: 296 SARDDEQSLYITFKDEKLIALSDIHLAGMHNVLNIMAALGICLQLGVSPALAVKHLRSFK 355

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R            ID+S   N  +    ++ L  ++P  +G+ I + G     G+ 
Sbjct: 356 AAPHRCVEIARVNDIRYIDDSKATNIGAT---VAALEGLAPTIQGKLILIAG-----GDA 407

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             +    L+  L+ Y +SHV+  G      + +     H     TM             G
Sbjct: 408 KGADIASLSPYLTKY-VSHVFALGKDAHLFEKSFA---HTTRVATMKDAVKAATRLAAPG 463

Query: 445 DVVVV 449
           DVV++
Sbjct: 464 DVVLL 468


>gi|108759161|ref|YP_633742.1| UDP-N-acetylmuramate--L-alanine ligase [Myxococcus xanthus DK 1622]
 gi|123374163|sp|Q1D0T1|MURC_MYXXD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|108463041|gb|ABF88226.1| UDP-N-acetylmuramate--alanine ligase [Myxococcus xanthus DK 1622]
          Length = 472

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 80/461 (17%), Positives = 159/461 (34%), Gaps = 64/461 (13%)

Query: 7   FHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
             ++L  +     G    +  +       R +     FF        GH    + +Q  A
Sbjct: 31  IAEVLLNLGYRVSGSDLRESDITR-----RLVRMGATFF----E---GHR-AQNLIQ--A 75

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            +VV+++ +      +       IPV         +  LA   RL+     +A+ GS GK
Sbjct: 76  DVVVISSAVRKDNPEVVAARQRKIPVI----PRAEM--LAELMRLKYA---VAVAGSHGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  M+   LS+       +     ++        +  +   G  EL +    E     
Sbjct: 127 TTTTSMVATVLSAAGLDPTAVVGGKVNV--------LDSNAKLGKSELMVVEADESDGSF 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             + P IA++T I P H+ ++  ++ + SA  E    +   G   L  D+   + L  + 
Sbjct: 179 LHLHPSIAIVTNIDPEHMDHYGDLDTLQSAFVEFCNRVPFYGLNVLCLDNPNVQALLPRI 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLM 298
                    ++G S  AD++L   +     +     + +    E     +G H A N L 
Sbjct: 239 EK----RFVTYGSSHMADYRLENIQLDGFTTRFNAYRREESLGEFRVRMVGAHNAFNALA 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   +   ++T  ++L+ F   + R         +     + + Y  +P  +     
Sbjct: 295 VIAVAEEMDIPLETVRESLAEFGGVQRRFT----VRGEAQGITVVDDYGHHPTEV----- 345

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH----- 410
           + +         R  V+         +     +     +  ++   + V+ +G       
Sbjct: 346 LATLAGARRAFGRRVVVAFQPHRYTRTHDLMKEFTTSFNDSDVLFVTSVYAAGEERIHGA 405

Query: 411 -VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
              AL DA+    H  V + E    L   +   L +GD+V+
Sbjct: 406 TGDALADAVRAHGHRDVTFVEKRTDLPAALLPRLREGDLVL 446


>gi|260775365|ref|ZP_05884262.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608546|gb|EEX34711.1| UDP-N-acetylmuramate--alanine ligase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 486

 Score = 61.0 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 146/409 (35%), Gaps = 36/409 (8%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIA 112
           FI HA      A +VVV+T +      +       V  V  A   LA   R R     IA
Sbjct: 71  FIGHAESNVHQASVVVVSTAINEENPEIKAARAARVPVVRRA-EMLAELMRFRHG---IA 126

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  ++T   S  +     +                  +   G   + ++  
Sbjct: 127 VAGTHGKTTTTALVTQIYSEAELDPTFVNGGLVK--------SAGTNARLGSSRILIAEA 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
            E       ++P ++++T I   H+  +    E +     +    L   G   +  DD  
Sbjct: 179 DESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPV 238

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              L  +      + + ++G +++AD ++    ++  +  +  V+    ++++  +  G 
Sbjct: 239 VRELIPRI----SRQVITYGFAEDADVRIENYCQEGQQGKFTVVRQGRANLDITLNIPGR 294

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H A N    + + +    D ++ ++A++       R +            ++ + Y  +P
Sbjct: 295 HNALNAAAAIAVATEDDIDDESILRAMAGTQGTGRRFEHLGEFDTGNGSAMLVDDYGHHP 354

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLS 407
             +   I      + +G   +  V+         ++  + D A VL   ++     V+ +
Sbjct: 355 TEVDVTIHA----ARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLLMLDVYSA 410

Query: 408 GF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           G          AL   +     +   +      L   + + L DGD+V+
Sbjct: 411 GEKPIAGADGRALCRTIRSRGKIDPIFVSDSTTLPSVLANVLQDGDLVL 459


>gi|170702957|ref|ZP_02893793.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
 gi|170132129|gb|EDT00621.1| UDP-N-acetylmuramate [Burkholderia ambifaria IOP40-10]
          Length = 461

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 118/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +   V    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSQSERVGAVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSIDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L     H   R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGHQNSRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 142/425 (33%), Gaps = 52/425 (12%)

Query: 63  KGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +            L IP     D+  AL          ++   IA+ GS
Sbjct: 67  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---------VNEYDGIAVAGS 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEI 175
            GKTTT  M+ + L     +   I        VP       +    + + E   S     
Sbjct: 118 HGKTTTTSMIGVTLDRASVSPTVIVGGE----VPDLGTNAKLGTSRYLVSEADES----- 168

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L Y++     L
Sbjct: 169 DGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYENEILRRL 228

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A++    +           A             S+   +       +  H  G H   N
Sbjct: 229 GAETDRTVVSYAIDAAADYRAADIETCGSVI---SFTVFERGTALGRISLHIPGRHNVLN 285

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +   D D    AL+ FH  + R +       +     + + Y  +P  + A
Sbjct: 286 ALACVAVARLAGLDFDRIADALAHFHGAKRRFQT----KGKERGIWVVDDYAHHPTEIAA 341

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV- 411
            ++   Q  P   GR + V          +Q    +     +  ++   + V+ +G    
Sbjct: 342 TLAAARQTEP---GRLVCVFQPHRY--SRTQLLRAEFGGCFAAADLLLLTDVYAAGEAPI 396

Query: 412 -----LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLI 461
                  L + + R       Y      L  ++   +  GD+V+   +          L+
Sbjct: 397 PGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGA-GNILEVGEELV 455

Query: 462 NLLLE 466
             L E
Sbjct: 456 ARLKE 460


>gi|226951004|ref|YP_002806095.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
 gi|254765991|sp|C1FNF4|MURC_CLOBJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226844146|gb|ACO86812.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 458

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGDLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  + +I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKCKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKDGDLIL 441


>gi|168181017|ref|ZP_02615681.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
 gi|182668137|gb|EDT80116.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum NCTC
           2916]
          Length = 458

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGDLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  + +I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGAILNIDADHLDYYRDLNDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKCKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKDGDLIL 441


>gi|310765084|gb|ADP10034.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia sp.
           Ejp617]
          Length = 438

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 122/349 (34%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQV----GTGGNIGLPALTL-LQQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G             D       +    +W+ VQ +   
Sbjct: 210 VVNADDAMTMPVRGADARCVSFGA------------DVGDYHLTRQQGSTWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                H +G H   N L  L +   +     T++KAL+ F+    R    +         
Sbjct: 258 NTDEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRF---QRVHEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  ++  G     L  AL   + V  +ETM      I + +  GD+V++
Sbjct: 365 I-RIYCFGRDGAELA-ALRPEVAVQ-TETMAEAVQQIAARVQPGDLVLL 410


>gi|197302584|ref|ZP_03167639.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
 gi|197298482|gb|EDY33027.1| hypothetical protein RUMLAC_01313 [Ruminococcus lactaris ATCC
           29176]
          Length = 457

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 119/377 (31%), Gaps = 44/377 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVD 161
               K  ++AITG+ GKTTT  +L   + +  +    +     +IG P T   +   +  
Sbjct: 110 YEAGKGEVLAITGTNGKTTTTSLLGQIMKNYTENTYVV----GNIGNPYTSVALETTEDS 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  I       RP ++ I  I P HL+    +E   +AK  I +   +  
Sbjct: 166 VIVAEMSSFQLETIE----TFRPRVSAILNITPDHLNRHHTMEAYIAAKENIAKNQTEED 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T  LNY+D+          A  +         +       K          E+       
Sbjct: 222 TCVLNYEDAVTRQFGETLKAKVLYFSSQRILEEGIYLDGEKIVLSLNGEKTEICT----- 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
               + +G H  +N +    + +     V+   K L  F   E R         +     
Sbjct: 277 VNELNILGTHNHENAMAAAAMAAAYGVPVEIIRKTLKEFQGVEHRI---EFVAEKDGVVY 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   NP +    I  +++ +    G            G    S + +         +
Sbjct: 334 YNDSKGTNPDAAIKGIQAMNRPTVLIGG------------GYDKDSAYDEWIN-AFDGKV 380

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
             + L G     +     +     +  ++T +  F         GD V++    +S    
Sbjct: 381 KKLVLIGATREKIAQTAEKLGFHEIVMADTFEEAFEKCVEYAEPGDAVLLSPACASWGMF 440

Query: 453 -----NSCGFYRLINLL 464
                    F  L+N L
Sbjct: 441 KNYEQRGDKFKELVNQL 457


>gi|225619257|ref|YP_002720483.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
 gi|254765984|sp|C0QXF2|MURC_BRAHW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225214076|gb|ACN82810.1| UDP-N-acetylmuramate--alanine ligase [Brachyspira hyodysenteriae
           WA1]
          Length = 462

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 81/411 (19%), Positives = 140/411 (34%), Gaps = 41/411 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++     VV ++ +           S  I V       G +  LA   RLR 
Sbjct: 57  GHK--AQNIEDDVTAVVTSSAISPTNEEIIEAKSKKITVI----SRGEM--LAELMRLRY 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI+GS GKTTT  +++  +        CI    NH  +    A   +  ++ + E
Sbjct: 109 G---IAISGSHGKTTTTSLISQIMMHAGLNPVCI-IGGNHFNLKSNAACNDLSSEYMVCE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P I V+T I   HL  +  +E +  A  E    +   G  FL 
Sbjct: 165 ADES-----DGSFLRLSPVINVVTNIDNDHLDYYGNVEALRVAFLEFINKVPFYGCSFLC 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQLQGKSMEV 283
           ++D+  + L   ++       YS+G SK+ DF + +     E     +          E 
Sbjct: 220 FEDNVVKDLSKSANK----KYYSYGFSKDYDFYVDRDSIRVEAPITYFTAYHNSECLGEF 275

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H   N L ++G+   L  D+    + L  F     R  +        F     
Sbjct: 276 SVPLIGIHNVLNSLASIGVGIHLGIDIADIKEGLKTFEGVGRRLNKLYDKEITLFDDYAH 335

Query: 344 E-----SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                 +  ++  +      +++   PH   R   +L D       +    I        
Sbjct: 336 HPTEIKATLSSVRNAYKNRRIIAVFQPHRYSRTELLLNDFEYAFNDADEVIISDIYAAGE 395

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             I      G     + D + + + HV Y   ++ +   +     DGD+++
Sbjct: 396 SPI-----PGISGEIICDVVRKQNNHVRYIPNIEDVLPVLDDIKKDGDIIL 441


>gi|332305223|ref|YP_004433074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332172552|gb|AEE21806.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 441

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 60/423 (14%), Positives = 123/423 (29%), Gaps = 78/423 (18%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++ G                    V  V D+     +L       +   ++A+TGS
Sbjct: 80  IQEAIEAG--------------------VQVVGDI-----ELFAMF---NNTPVLAVTGS 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+T   +      +             +IG P     +  D D  + EL    L    
Sbjct: 112 NGKSTVATLAYEMCIA----GGKKALLGGNIGTPALEL-LEKDADIIVLELSSFQL---- 162

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             TH +RP +A +  ++  HL     +     AK  I++    +                
Sbjct: 163 ESTHTLRPLVACMLNLSDDHLDRHGDMLSYQRAKLRIYKDARFSVC-------------- 208

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  A       +           R      + + + +  +          +G H   N+
Sbjct: 209 NRDDAATWPMTINPDVMFGLSSSERGLSWDKDTAQLLLDGKAYLDSQACMLVGEHNMLNI 268

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                +  +   +++    A   F     R    +          I++S   N  +    
Sbjct: 269 QAATAMTMLAGIELEAIKSAAMNFAGLAHRC---QTVAMSSNVRWINDSKATNVGAT--- 322

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I+ +  ++P  +G+ I + G   +  + S             + +S +   G     L  
Sbjct: 323 IAAIDGLAPTCKGKLILIAGGDGKGADFSPLEER------FNHQVSELITLGKDGPELAK 376

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             P S  V     ++       S       V++    +S             F + ++ L
Sbjct: 377 LKPSSHQVV---NLEDAVQLAASLASKDSTVLLSPACASLDMFKNYQQRGELFEQAVHNL 433

Query: 465 LEE 467
           + +
Sbjct: 434 VAK 436


>gi|302671221|ref|YP_003831181.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
 gi|302395694|gb|ADL34599.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD [Butyrivibrio
           proteoclasticus B316]
          Length = 457

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 124/383 (32%), Gaps = 47/383 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +K  +IAITG+ GKTTT  ++   + +    +        +IGV    + +
Sbjct: 105 ELAYNF---AKGKMIAITGTNGKTTTTTLVGEIMKA----HFGKAYVVGNIGVSYAESAL 157

Query: 157 PVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            +D     + E+    L  +      V    + I  I P HL+    +E  A  K  I  
Sbjct: 158 EMDESCVTVGEISSFQLEAVDNFHANV----SAILNITPDHLNRHHTMECYAQMKENITH 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K  T  LNYD+ +     A+  A     ++   K K  D      +     +     
Sbjct: 214 NQTKEDTCVLNYDNEYTRDFGARCPAK---VVFFSSKEKLEDGFYLDGEDIYMATAGNAM 270

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                 ++   G       N++  + +   +   + T +  +  F   E R         
Sbjct: 271 KIMNIHDMNLVGTCNVE--NVMAAIAMSLAMDVPLATILSVIRNFKAVEHRI---EFVAT 325

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +      ++S   NP +    +  + +           ++G   + G     +     + 
Sbjct: 326 KRGVDYYNDSKGTNPDAAIQGVKAMCK--------PTILIGGGYDKGNDYDEWIESFGDT 377

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV---K 450
                I  + L G     + +   +    +Y   +T +    F   S   GD V++    
Sbjct: 378 -----IKLLVLIGQTRQKIAECCDKHGFSNYVFKDTYEEALEFCTESAQKGDAVLLSPAC 432

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F   +N L
Sbjct: 433 ASWDMFPNYETRGKRFKDYVNKL 455


>gi|325679015|ref|ZP_08158613.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
 gi|324109519|gb|EGC03737.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcus
           albus 8]
          Length = 465

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 110/384 (28%), Gaps = 48/384 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                       A+TGS GKTTT  +++  L +  K     G+    +   L L     +
Sbjct: 110 ETFFDLCPCKTYALTGSDGKTTTTTLVSEFLKAEGKRVHLGGNIGKAL---LPLVETISE 166

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P +A IT I P HL+    +EE   AK  I      
Sbjct: 167 TDVAVCELSSFQL-----ISMRESPDVAGITNIRPNHLNVHGTMEEYTQAKCNILYHQNA 221

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L+ DD     L                   +   +        E   +     GK
Sbjct: 222 YSKAILSLDDEVTHGLADLVRGELAW--------FSIKEKPDNGAFLREDGMLCYNECGK 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E VH         + +        +T           +     G   R          
Sbjct: 274 VTEYVHMNDIKIPGMHNVEDYLTAIAMTYGEVKPETVAKIAKEFGGVEHRIEFVRELDGV 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S  ++P  + A ++   +               M + G         +A  +   
Sbjct: 334 KYYNNSIASSPTRVLACLAAFDKKQI------------MIQGGSDKGVSFEPMAAPICE- 380

Query: 400 NISHVWLSGFHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            +  + L G     ++ A+          I +   + M    L  +    +GD+V +   
Sbjct: 381 KVKVLILMGQTKDKIRAAVEAAPNFKTSGIKIITVKDMAEAVLTAREYAEEGDIVSLTPA 440

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F +L+N L
Sbjct: 441 CASFDMYRMFEDRGRHFKQLVNEL 464


>gi|148997231|ref|ZP_01824885.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|168575358|ref|ZP_02721294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|307067304|ref|YP_003876270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
 gi|147756931|gb|EDK63971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP11-BS70]
 gi|183578542|gb|EDT99070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae MLV-016]
 gi|306408841|gb|ADM84268.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus
           pneumoniae AP200]
          Length = 450

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGEH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLASKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 79/425 (18%), Positives = 142/425 (33%), Gaps = 52/425 (12%)

Query: 63  KGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  +VV+T +            L IP     D+  AL          ++   IA+ GS
Sbjct: 70  RGADAIVVSTAIPYDNPEVIAAWDLRIPKLHRSDINAAL---------VNEYDGIAVAGS 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEI 175
            GKTTT  M+ + L     +   I        VP       +    + + E   S     
Sbjct: 121 HGKTTTTSMIGVTLDRAGVSPTVIVGGE----VPDLGTNAKLGTSRYLVSEADES----- 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                 +RPHIAV+T +   H+ ++  +E+I  A       ++  GT  L Y++     L
Sbjct: 172 DGSFLKLRPHIAVVTNVEDDHMDHYGTMEKIIEAFRTFISQIDADGTAVLCYENEILRRL 231

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A++    +           A             S+   +       +  H  G H   N
Sbjct: 232 GAETDRTVVSYAIDAAADYRAADIETCGSVI---SFTVFERGTALGRISLHIPGRHNVLN 288

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +  +   D D    AL+ FH  + R +       +     + + Y  +P  + A
Sbjct: 289 ALACVAVARLAGLDFDRIADALAHFHGAKRRFQT----KGKERGIWVVDDYAHHPTEIAA 344

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV- 411
            ++   Q  P   GR + V          +Q    +     +  ++   + V+ +G    
Sbjct: 345 TLAAARQTEP---GRLVCVFQPHRY--SRTQLLRAEFGGCFAAADLLLLTDVYAAGEAPI 399

Query: 412 -----LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLI 461
                  L + + R       Y      L  ++   +  GD+V+   +          L+
Sbjct: 400 PGISGETLMEEVARQTGQDAVYLPERADLVQYLAEHVRPGDLVITMGA-GNILEVGEELV 458

Query: 462 NLLLE 466
             L E
Sbjct: 459 ARLKE 463


>gi|260886503|ref|ZP_05897766.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|330839653|ref|YP_004414233.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|260863646|gb|EEX78146.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas sputigena ATCC
           35185]
 gi|329747417|gb|AEC00774.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sputigena ATCC
           35185]
          Length = 457

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 71/421 (16%), Positives = 140/421 (33%), Gaps = 48/421 (11%)

Query: 46  IKG---PHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV-- 100
           +KG     + GH    +    GA  +VV+T +  +          V+     L +     
Sbjct: 46  LKGLGAHIHHGHR-AENV--HGAEAIVVSTAIPETNPE------IVEAARLGLRRFHRSD 96

Query: 101 -AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A L + A  IA+ G+ GKTTT  ML +AL     +   I      +        +  +
Sbjct: 97  INAALLNAAKGIAVAGAHGKTTTTSMLGVALDHAGISPTIIIGGEVDV--------LGGN 148

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G  E  +S   E       +RPHIAV+T I   HL ++  +  I  A  E  E ++ 
Sbjct: 149 AKLGKGEYLVSEADESDGSFLKLRPHIAVVTNIEDDHLDHYGTLANIRKAFREFLENIKP 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQG 278
            G   L +D+     +         + + S+     AD++  K +         V     
Sbjct: 209 GGHAVLCFDNENVRDIAQ----TLGRKVISYAIDHEADYRAGKIEMHGAGVDFSVLHEGK 264

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               V  +  G H   + L T+     +   V+     L++FH  + R +          
Sbjct: 265 DLGRVRLNLPGRHNVLDALATVVTGLSIGLTVEQMAAGLALFHGAKRRFQTKGRV----- 319

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                + +  +  +        + ++      R  +          ++    +       
Sbjct: 320 ----QDVWVVDDYAHHPTEIATTLLAARQTKPRRIICAFQPHRYSRTKLLAAEFGGAFRE 375

Query: 399 YNI---SHVWLSGFHV------LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            ++   + ++ +G           + DA+ +       Y    + +   + +    GD+V
Sbjct: 376 ADVLVLTDIYSAGEAPIEGVSGRTILDAVRQTTGQDAVYIPQREDIAAHLAAIAQSGDIV 435

Query: 448 V 448
           +
Sbjct: 436 L 436


>gi|254670208|emb|CBA05358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha153]
          Length = 458

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 113/413 (27%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKAALPESLK------------GADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I      GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGKLHVGKDFDAFIAEIVKHTEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|78485922|ref|YP_391847.1| UDP-N-acetylmuramate [Thiomicrospira crunogena XCL-2]
 gi|78364208|gb|ABB42173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 458

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 71/424 (16%), Positives = 126/424 (29%), Gaps = 45/424 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   + A     S P +  +++L                 ++A+ G+
Sbjct: 66  IGNALSRGHAA--VEATLNAQQLYTSGPQWLAENILK-------------DRWVVAVAGT 110

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGE 174
            GKTTT  M+   L                 GVP     +       F + E        
Sbjct: 111 HGKTTTASMVAWILEHAGLQP-----GFLIGGVPENFGVSARLGASPFFVVEADEYDTAF 165

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                      P   V+  +   H   F  +  I      +   +   G I    D++  
Sbjct: 166 FDKRSKFVHYHPRTCVLNNLEFDHADIFDDLAAIQKQFHHLVRTVPGNGLIIQPSDETNI 225

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + +  +     ++T  S     +  +QL         ++          EV     G H 
Sbjct: 226 DEVIQQGCWTPLETQGSQSTQADWAYQLLSDD---GTAYEVYYKGQLRGEVHWQMTGLHN 282

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            +N +  +         V+ AI+ L  F     R  +             D +++     
Sbjct: 283 VRNGVSAIAAAQHCGVPVEEAIQGLCAFEGVRRRMTQIGTVNGIV--VYDDFAHHPTAIE 340

Query: 353 MKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWL-SG 408
           M  +       +    GR IAV     +   MG    S         +      V+    
Sbjct: 341 MTLSGMKSQLKARPTSGRLIAVFEPRSNTMRMGVHQNSL------PAAFDQADAVYAFID 394

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
                        + V  ++T + L   +   L+  D VV+  SN   F     RL+N L
Sbjct: 395 PDWNWSMPKDLFKVPVKVADTYNDLLDRLVDELLPEDTVVI-MSNGS-FGGIHQRLLNAL 452

Query: 465 LEEF 468
            ++F
Sbjct: 453 QQKF 456


>gi|317493278|ref|ZP_07951700.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918671|gb|EFV40008.1| UDP-N-acetylmuramate-alanine ligase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 500

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 134/408 (32%), Gaps = 49/408 (12%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 134 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+       E +          L   G   +  DD     L  
Sbjct: 189 ---LQPMVAVVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S++AD ++  ++Q   + ++   +     + V  +  G H A N 
Sbjct: 246 RV----GRHITTYGFSEDADVRIESYQQNGAQGTFFICRQDKPRLAVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +      +  ++AL  F     R              +    ++ + Y  +P 
Sbjct: 302 AAAVSVATEEGIADEDILRALEGFQGTGRRFDFLGEYALENVNGKEGKAMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P+       V+         ++  + D A VLS  ++     V+ +G
Sbjct: 362 EVDATIKAARAGWPNR----RLVMIFQPHRFTRTRDLYDDFANVLSQVDVLLMLDVYSAG 417

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     +L   +     +          L   +   L + D+++
Sbjct: 418 ETPIPGADSRSLCRTIRGRGKLDPVLVSDAATLPATLAQFLQNDDLIL 465


>gi|317055687|ref|YP_004104154.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
 gi|315447956|gb|ADU21520.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ruminococcus albus
           7]
          Length = 464

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 113/384 (29%), Gaps = 48/384 (12%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                       A+TGS GKTTT  +++  L S  K     G+    +   L L     +
Sbjct: 109 ETFFDLCPCKTYALTGSDGKTTTTTLVSEFLKSEGKRVHLGGNIGKAL---LPLVETISE 165

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L     ++    P +A IT I P HL+    +EE   AK  I +    
Sbjct: 166 TDVVVCELSSFQL-----ISMRESPDVAGITNIRPNHLNVHGTMEEYTLAKCNILDHQNA 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                L+ DD     L+ +                +   +        E   +    +GK
Sbjct: 221 YARSVLSLDDEVTRGLQDRVRGDLAW--------FSIKEKPDNGAFLREDGMLCYNERGK 272

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E VH         + +        +T           +     G   R          
Sbjct: 273 VTEYVHMKDIKIPGMHNVEDYLTAIAMTYGEVKPENVAKIAKEFGGVEHRIEFVRELDGV 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              + S  ++P  + A ++   Q               M + G         +A  +   
Sbjct: 333 KYYNNSIASSPTRVLACLAAFDQKQI------------MIQGGSDKGVSFEPMAAPICE- 379

Query: 400 NISHVWLSGFHVLALKDALP-------RSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            +  + L G     ++ A+          + +   + M       +    +GD+V +   
Sbjct: 380 KVKVLILMGQTKDKIRAAVEAAPNFKGSGLKIITVKDMAEAVRTAREYAEEGDIVSLTPA 439

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F +L+N L
Sbjct: 440 CASFDMYRMFEDRGRHFKQLVNEL 463


>gi|238924607|ref|YP_002938123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
 gi|238876282|gb|ACR75989.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Eubacterium rectale
           ATCC 33656]
          Length = 463

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 98/317 (30%), Gaps = 39/317 (12%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L  I       +PH++ I  I P HL+    +E    AK +I +        
Sbjct: 172 VAEISSFQLETID----TFKPHVSAILNITPDHLNRHHTMENYIRAKEDITKNQTADDYC 227

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LNY+D       AK  A  I        S+             +               
Sbjct: 228 VLNYEDEVLRDFAAKCPAKVIFFSSKSELSEGFYLDGDIIIYAHDGVR-----DEVIDVN 282

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             + +G H  +N++    +       +D  ++ L VF   E R         +      +
Sbjct: 283 ELNLLGKHNFENVMAACAMSISFGVPMDKIVEVLKVFKAVEHR---IEYVTEKRGVRFYN 339

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +    I  +++ +    G            G   QS + +  E      +  
Sbjct: 340 DSKGTNPDAAIQGIRAMNRPTLLIGG------------GYDKQSEYDEWIE-AFDGKVKE 386

Query: 404 VWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
           + L G     +++   R   ++    +T +    +     V GD V++    +S      
Sbjct: 387 LVLIGQTADKIEECAHRHGFMNTVKKDTFEDAVNYCYEHAVSGDAVLLSPACASWGMFPN 446

Query: 453 ---NSCGFYRLINLLLE 466
                  F  ++    E
Sbjct: 447 YEERGRIFKEIVKGFKE 463


>gi|298507096|gb|ADI85819.1| UDP-N-acetylmuramate--alanine ligase [Geobacter sulfurreducens
           KN400]
          Length = 462

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 114/388 (29%), Gaps = 36/388 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V       IPV         +  LA   R++     IAI G+ GKTTT  M+   L
Sbjct: 77  DNPEVVEAKRRMIPVI----PRAEM--LAELMRMKYG---IAIAGTHGKTTTTSMVATVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +     +    L          F + E   S           + P IAV+T
Sbjct: 128 THGGIDPTIVIGGKLNT---LGTNAKLGQGQFLVAEADES-----DGSFLKLSPTIAVVT 179

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL  +  GIE+I     +    +   G   L  +D     +  +          +
Sbjct: 180 NIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK----RFVT 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +    +     +      +G  M EV     G H   N L  + +   L  
Sbjct: 236 YGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFSMPGAHNVLNALACIAVAMELDV 295

Query: 309 DVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 +  + F     R +            + G       +  A   S      ++  
Sbjct: 296 PFSQIQEGFATFGGVGRRFQVKGEVNGITVVDDYGHHPAEIRATLAAGKSGWPERRLVVA 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             PH   R   +  +       +    +          I      G     L + + +  
Sbjct: 356 FQPHRFSRTRELFAEFVTCFYDADVLVLTDIYPAGEAPIE-----GVSAERLAEEIRKHG 410

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVV 448
              V Y    + L   + + +  GD+V+
Sbjct: 411 QRDVTYVADREALPEHLLTVVQPGDIVL 438


>gi|297539594|ref|YP_003675363.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
 gi|297258941|gb|ADI30786.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylotenera sp.
           301]
          Length = 452

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 121/354 (34%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L    R  + A +IAITG+ GKTT   ++     +             +IG+P+  A M
Sbjct: 101 ELFAQYRP-TSAKVIAITGANGKTTVTTLVGEICKAAGL----KTIVAGNIGLPVLDALM 155

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T  ++   A +  ++  H+  ++  ++ A AKA IF  
Sbjct: 156 METPDVYVLELSSFQL----ETTSNLQIDAATMLNLSEDHMDRYASFQDYAIAKARIFYN 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +       +          +   A       +FG   + +      KQ    +W+    
Sbjct: 212 AKLQVLNRDDAW--------SMMMARPKLAQVTFGLDDDGEETSYGLKQVDGDTWLCEGD 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +          +G H A N L  + +   +  D    I+ L  F     R        N 
Sbjct: 264 KELINLQDLKIVGLHNAANALAAVALCRGIGVDYAHIIQTLYNFKGLPHRV---EWVANI 320

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 D+S   N  +  AA++ L+Q       + + + G   +  + +           
Sbjct: 321 DDVDYYDDSKGTNVGATCAALTGLAQ-------KVVLIAGGDGKGQDFTPLAAAVAENAS 373

Query: 397 SLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++       L G     ++ AL P +I ++ +  +       +      + V++
Sbjct: 374 AVV------LIGRDAPLIEAALLPTNIPLYQAADLPEAVNIAKKLAKADEAVLL 421


>gi|288818598|ref|YP_003432946.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|288787998|dbj|BAI69745.1| UDP-N-acetylmuramate--L-alanine ligase [Hydrogenobacter
           thermophilus TK-6]
 gi|308752189|gb|ADO45672.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobacter thermophilus
           TK-6]
          Length = 452

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 127/396 (32%), Gaps = 45/396 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     + IPV    D       LA   RL+     IA+ GS GKTTT  M+   +
Sbjct: 78  SNPEIVQAKKMGIPVIPRGD------MLAELFRLKEG---IAVCGSHGKTTTTSMIAHMV 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I        +    +   +  D  I    +S   E       + P +AVIT
Sbjct: 129 HEAGYDPTVIIGGV----LQKFGSNARLGKDQLI----ISEADESDGSFLKLLPTVAVIT 180

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +  ++EI SA       +   G   +N DD     +     A     + +F
Sbjct: 181 NIDREHLGYYKDLDEIKSAFLRFANSVPFYGFCVMNADDENSREVMKSVKAP----LITF 236

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG-YHMAQNMLMTLGIVSILTAD 309
           G  + A    R           ++  +GK +  +H  +   H   N L  + +   +   
Sbjct: 237 GIEREAHLMARNLSLEGGCYSFDLFYEGKPLTRIHMSVAGRHNVYNALAGIAVCLRMGIS 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL------NQGFFTLIDESYNANPASMKAAISVLSQI 363
           V    KAL  F   E R +            + G       +       M     ++   
Sbjct: 297 VSNIKKALESFKNAERRLEFKGYFKGAAVYDDYGHHPTEIRAVIKALREMYLQRRIVLVF 356

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRS 421
            PH   R   +  D  E           + +   +  ++ ++ +G           L ++
Sbjct: 357 QPHRYSRTYYLFKDFVE-----------VLKEADVCLLTDIYSAGEENSYGVSAQDLAKA 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKS----SN 453
               + E  + LF  I+  + D DV++       S 
Sbjct: 406 AGCAFFENKEELFDAIEKKVKDADVILFMGAGSISR 441


>gi|170731931|ref|YP_001763878.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
 gi|169815173|gb|ACA89756.1| UDP-N-acetylmuramate [Burkholderia cenocepacia MC0-3]
          Length = 461

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 118/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +      G+  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++   I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIDTTIAGLRARIGRQNARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|294676377|ref|YP_003576992.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
 gi|294475197|gb|ADE84585.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter capsulatus SB
           1003]
          Length = 468

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 86/450 (19%), Positives = 140/450 (31%), Gaps = 49/450 (10%)

Query: 14  IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN-- 71
            QG S+        + I  D R +     FF  +G        I  A    A +V+ +  
Sbjct: 32  TQGFSVQGS-DAKASKI-TD-RLVELGATFF--EGQRA---SNIGEA----AVVVISSAI 79

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
                 +         V  V  A   LA   RLRS    IAI G+ GKTTT  M+   L 
Sbjct: 80  KPGNPELEEARRRHLPV--VRRA-EMLAELMRLRSN---IAIAGTHGKTTTTTMVATLLD 133

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                       N  I             ++ + E   S         + +   IA++T 
Sbjct: 134 K---GGFDPTVINGGIIHAYGSNARAGAGEWMVVEADES-----DGSFNRLPATIAIVTN 185

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P H+ ++  IE +     +   G+   G      D    + L  K        + +FG
Sbjct: 186 IDPEHMEHWGTIENLRKGFYDFVSGIPFYGLAVCCTDHPEVQALVGKITDR---RVVTFG 242

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
            +  AD +    +    ++  ++QLQ +            G H   N L  + +   L  
Sbjct: 243 FNAQADVRAVNLRFEGGRNCFDIQLQAEGAVIEGCTLPMPGNHNVSNALAAVAVARHLGM 302

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D    AL+ F     R  +            + + Y  +P  + A +    Q      
Sbjct: 303 KKDEIRDALANFAGVNRRFTK---VGEVLGGVTVIDDYGHHPVEIAAVLKAARQAVSATP 359

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV------LALKDALP 419
           G    +           Q+   D     +  +   I+ V+ +G           L   L 
Sbjct: 360 GA-RVIAAHQPHRYTRLQNLFDDFCTCFNEADVVAIADVYAAGEEPIPGASRDDLVSGLI 418

Query: 420 RSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           R  H H       + L   ++     GD+V
Sbjct: 419 RHGHRHARALLNEEDLARLVKEQARPGDIV 448


>gi|311741530|ref|ZP_07715354.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303700|gb|EFQ79779.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 487

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 125/421 (29%), Gaps = 41/421 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV    D+L AL +             + + G+ GKT+T  M   A+
Sbjct: 86  DNPELVAAKDNDIPVIRRSDLLAALME---------GHKQVLLAGTHGKTSTTSMTVSAM 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +          +            +  + E   S    +R+      P +AV+
Sbjct: 137 QHAGLDPSFAIGGQ----LNRAGTNAHGGTGEAFVAEADESDASLLRYS-----PDVAVL 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TTI P HL  F   E       +  + +       +   +        +        + +
Sbjct: 188 TTIEPDHLDFFHSEEAYFQVFDDFADLVTPETGYLVVCAEDEHAARAGERALERGINVVA 247

Query: 250 FG--KSKNADFQLRKWKQCSEQSWMEVQLQGKS---------MEVVHHGIGYHMAQNMLM 298
           +G  +           +   E++  E      +         +       G+HM  N + 
Sbjct: 248 YGSPEKSFTSTVPLAAELVREETTAEGMDTTVNLDLPSVSETVRYELQIPGHHMVLNSMG 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L    +         + L+ F     R +       QG    + + Y  +P  + A + 
Sbjct: 308 ALIAGVLSGGAPAAIAEGLADFGGVRRRFEYRGSVDKQGKPVRVFDDYAHHPTEVAAVLR 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
                          +      +   +  F  + A+ LSL + + V            G 
Sbjct: 368 AARAKVEAEGHGGRVIACFQPHLYSRTMEFDAEFAQALSLADAAVVLDIYGAREQPVEGI 427

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               + D +P  + V +          + S +  GDVV+   + S     +   +L+E  
Sbjct: 428 TSRIITDKMPADMQVIFEPDFSAAARDVVSVVEPGDVVLTIGAGSVTM--VAAEILDELR 485

Query: 470 A 470
           A
Sbjct: 486 A 486


>gi|29832662|ref|NP_827296.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           avermitilis MA-4680]
 gi|60390553|sp|Q82AD8|MURD_STRAW RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29609782|dbj|BAC73831.1| putative UDP-N-acetylmuramoylalanine-D- glutamate ligase
           [Streptomyces avermitilis MA-4680]
          Length = 467

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 138/415 (33%), Gaps = 51/415 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  + A+     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT +ML   L
Sbjct: 81  DKPLFAAAAEAGVPVWG--DV-----ELAWRLRGPGSAPWLAVTGTNGKTTTVQMLASIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++         +   +IGV L  A +  +  D    EL    L         +R H A +
Sbjct: 134 TAAGLR----TAAVGNIGVSLLDAVLGEETYDVLAVELSSYQLHWA----PSLRAHSATV 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             IAP HL     +E   + K  I+EG        +    +   +  A          ++
Sbjct: 186 LNIAPDHLDWHGSMEAYTADKGRIYEGNRVACVYNVADKATEDLVRAADVEEGCRAVGFT 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G    +   + +     +++++E + +          +      N+   L   ++  A 
Sbjct: 246 LGTPGPSQLGVVEGIL-VDRAFVEDRQKNAQELAEVADVHPPAPHNIANALAAAALARAF 304

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A               R     +    T ID+S   N  + +A+++          G
Sbjct: 305 GVPASAVRDGLRAFRPDAHRIAHVADVDGVTYIDDSKATNTHAAEASLAAY--------G 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
             + + G + +     +     +A+      +  V L G     +++AL R         
Sbjct: 357 SIVWIAGGLAKGASFDEL----VAKSAQR--LRGVVLIGADRALIREALARHAPEVPVVD 410

Query: 430 MD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +D              +   V GD V++    +S             F   +  L
Sbjct: 411 LDRTDTGAMPAAVQEARRLAVAGDTVLLAPACASMDMFANYNKRGDAFAEAVRGL 465


>gi|156741086|ref|YP_001431215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
 gi|189082915|sp|A7NI97|MURD_ROSCS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156232414|gb|ABU57197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus
           castenholzii DSM 13941]
          Length = 472

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 83/295 (28%), Gaps = 22/295 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA ITTIAP HL     +E    AK EI+        + L  D      +       G
Sbjct: 181 PKIACITTIAPDHLDRHGTMEAYIQAKEEIWRHQRPGDPVVLCADSPIMRAMAVVDRRPG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++  K  +        +       +    +     + H  I       +     + 
Sbjct: 241 DMVWFAGAKGSDVYRLKGDRRAFWRGDELIWHDRSTEGSITHTVICTRDDVRLPGAHNLA 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +I  A        ++  H      + +    ++  F    +       +   A       
Sbjct: 301 NIAAATAAACAFGIAPEH-IRRAVRAFAGVEHRLEFVRELDGVCYINDTAATAPEAAIAA 359

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRS 421
               +   + + G     G          A  ++    + + L G     L DAL   R+
Sbjct: 360 LRTFDAPIVLIAG-----GADKNLPFDAFAREIAQRASAVILLQGSATPKLLDALRAARA 414

Query: 422 IHVHY--SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
               +   +  +      +     G++V++    +S             F R++ 
Sbjct: 415 SVAIHGPYDDFEQALDTARRIAAPGEIVLLSPGCASFGMFRNEFHRGDTFRRIVQ 469


>gi|326568323|gb|EGE18403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moraxella
           catarrhalis BC7]
          Length = 469

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 79/414 (19%), Positives = 137/414 (33%), Gaps = 48/414 (11%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           T  +A+  +  IPV  V DV   ++ L A      +   +IAITGS  K+T   ++    
Sbjct: 75  TPSIAAAKAQGIPV--VSDVQLFIDTLKARDLAQATNTPVIAITGSNAKSTVTTLVGEMA 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                          +IG P        ++D  + EL    L  I  L        A I 
Sbjct: 133 KRAGMIV----GVGGNIGTPALELLTIQNMDLVVLELSSFQLEHISNLAAQG----ATIL 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIY 248
            ++  HL    G+ +  + K  IFE  +       +          L+  +    I T  
Sbjct: 185 NLSADHLDRHDGMADYLAQKLRIFEHCQTAIICQDDAGLAKQCLTTLQRIAPNHTIITTD 244

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S    + ADF L       +   +  Q             G H   N L  L + +    
Sbjct: 245 SSLTHQTADFYLFD---DGDGMALYHQKDKLLPIHQLKIKGKHNLLNALSALALGTAANL 301

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +D  +  L  F        R     +       ++S   N  S  AAI  L  +  +G 
Sbjct: 302 PMDAMLDTLKTFKGL---PHRCEYIDDIDGKAYFNDSKGTNIGSTMAAIDGLGTV--YGT 356

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----H 423
                +LG + +  + S     +L+  +  + +  V+L G     ++  L +        
Sbjct: 357 SSLALILGGLGKGQDFS-----ELSAYVMQW-VDSVYLIGQDAPMIEQDLLKGDAHLASK 410

Query: 424 VHYSETMDGLFLFI-QSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++   T+D   L   QS+      V++    +S             F  +++ L
Sbjct: 411 IYQVGTLDRAVLAASQSTARA---VLLSPACASMDQFKNYNERGDKFVNMVHAL 461


>gi|303230748|ref|ZP_07317495.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514508|gb|EFL56503.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 454

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 92/326 (28%), Gaps = 39/326 (11%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + EL    L           P  A++  + P HL+    +E  A+AKA IF 
Sbjct: 153 HMPEGGYLVAELSSYQL----ETIKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARIFM 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  + LN DD     +K  +H+  +              ++         +   V 
Sbjct: 209 NQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQ--------HHKVDSGAYFEGNTCYAVL 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    I    + N+   L ++++  A                G   R      
Sbjct: 261 DGKATPVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHTIEQFHGVEHRLERVTT 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T  ++S   N  S+  A+    +      G        M  + +            
Sbjct: 321 FHDVTFYNDSKATNTDSVVKALDAFDKPVILLAGGHD----KMTPLEDFMN--------- 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           +   +   V   G      +    +    H+H +++M             GD+V++    
Sbjct: 368 IVKAHTKEVIFMGEAADRFESVAVKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLLSPAC 427

Query: 451 SS---------NSCGFYRLINLLLEE 467
           SS             F   +  L E 
Sbjct: 428 SSFDWYSCFEERGEDFKNCVRELEER 453


>gi|15902647|ref|NP_358197.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae R6]
 gi|116515762|ref|YP_816097.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae D39]
 gi|30316022|sp|Q8DQM2|MURD_STRR6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122279017|sp|Q04LK1|MURD_STRP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15458185|gb|AAK99407.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           pneumoniae R6]
 gi|116076338|gb|ABJ54058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae D39]
          Length = 450

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNKL------AVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKRIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|303228392|ref|ZP_07315225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516894|gb|EFL58803.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 454

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 93/326 (28%), Gaps = 39/326 (11%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + EL    L           P  A++  + P HL+    +E  A+AKA IF 
Sbjct: 153 HMPEGGYLVAELSSYQL----ETIKSFCPLGAIVLNVTPDHLARHKTMENYAAAKARIFM 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  + LN DD     +K  +H+  +              ++         +   V 
Sbjct: 209 NQNPENFVVLNDDDPIVRAMKKDAHSKVLSISQ--------HHKVDSGAYFEGNTCYAVL 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +  +    I    + N+   L ++++  A          +     G   R      
Sbjct: 261 DGKATPVIDTEHIHIKGSHNIENILAVIALTYALGVEVEHIKHIIEQFHGVEHRLERVTT 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T  ++S   N  S+  A+    +      G        M  + +            
Sbjct: 321 FHDVTFYNDSKATNTDSVVKALDAFDKPVILLAGGHD----KMTPLEDFMN--------- 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           +   +   V   G      +    +    H+H +++M             GD+V++    
Sbjct: 368 IVKAHTKEVIFMGEAADRFESVAVKMGVQHIHRAQSMKEAVALGYQLAKAGDIVLLSPAC 427

Query: 451 SS---------NSCGFYRLINLLLEE 467
           SS             F   +  L E 
Sbjct: 428 SSFDWYSCFEERGEDFKNCVRELEER 453


>gi|170728148|ref|YP_001762174.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
 gi|169813495|gb|ACA88079.1| UDP-N-acetylmuramate [Shewanella woodyi ATCC 51908]
          Length = 461

 Score = 60.6 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/380 (16%), Positives = 123/380 (32%), Gaps = 18/380 (4%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A++G+ GKT+T  ML      ++      G     +     ++ 
Sbjct: 97  QFLAEHILK--NRWVLAVSGTHGKTSTSSMLA---WILEYCGYEPGFLIGGVPQNFGVSA 151

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +  F + E     S   + R      +P   VI  +   H   F  ++ I      +
Sbjct: 152 RTGNSPFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G I    +      +         +   S   +  A +   K        +  
Sbjct: 212 IRTVPGEGKIIWPKESQAVTEVIKMGCWSEQEFYSSSADTGQAGWST-KLIADDGHQFEL 270

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    IG H  +N  M +     +      AI+AL  F P + R +     
Sbjct: 271 FFDGVSQGTLDWQLIGQHNVENATMAVAAARHVGVKPQAAIEALVKFQPPKRRMELIGTV 330

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                +    + +  +P ++    + L          +I ++ +       S      LA
Sbjct: 331 NGIEVY----DDFAHHPTAI---ATTLQGTRAKVGEGKITIILEPRSNTMKSGVHKDTLA 383

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             ++L N ++++ +      L  A+ ++   V     +D +   +      GD +VV  S
Sbjct: 384 GSMALANEAYLYQADNIDWDLASAMNKAELPVKVLYEIDEIVETVAEKAESGDTIVV-MS 442

Query: 453 NSCGFYRLINLLLEEFPAIQ 472
           N  GF  L   LL++  A Q
Sbjct: 443 NG-GFGGLHQKLLKKLNAKQ 461


>gi|270292242|ref|ZP_06198456.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
 gi|270279288|gb|EFA25131.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           sp. M143]
          Length = 450

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 74/389 (19%), Positives = 135/389 (34%), Gaps = 43/389 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           +++ D    + +  IP      +  AL K          A L S+A I+ ITGS GKTTT
Sbjct: 68  LLDEDFALMVKNPGIPY-SNPMIEKALAKGIPVLTEVELAYLISEAPIVGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G  + +IG P +         D  + EL    L  ++     
Sbjct: 127 TTMIGEVLTAAGQR----GLLSGNIGYPASQVAQTATAKDTLVMELSSFQLMGVQEFH-- 180

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAVIT + P H+      EE  +AK  I   +     + LN++    + L  ++ A
Sbjct: 181 --PEIAVITNLMPTHIDYHGSFEEYVAAKWNIQNKMTAADFLVLNFNQDLAKELATRTQA 238

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +     F   +  D          E   +  + +           G H  +N L T+ 
Sbjct: 239 TVVP----FSTLEKVDG------AYLEDGQLYFRGEVIMAADEIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D     + LS F   + R    +           ++S + N  +         
Sbjct: 289 VAKLRGIDNQIIKETLSAFGGVKHRL---QFVDEIQGVKFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    +  + + G     +K A  ++
Sbjct: 340 ALSGFDNSKVILIAG-----GLDRGNEFDELVPDI--TGLKRMVILGQSAERVKRAAEKA 392

Query: 422 IHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
              +  +  +             GDVV++
Sbjct: 393 GVAYVDATDIADATRKAYELATQGDVVLL 421


>gi|115350565|ref|YP_772404.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|172059596|ref|YP_001807248.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
 gi|115280553|gb|ABI86070.1| UDP-N-acetylmuramate [Burkholderia ambifaria AMMD]
 gi|171992113|gb|ACB63032.1| UDP-N-acetylmuramate [Burkholderia ambifaria MC40-6]
          Length = 461

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 118/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSQSERVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSIDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRQNSRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPAGRDVLGWNLADALAPLGDKARAFDDLHLLVKSVVEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|33861920|ref|NP_893481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|60390532|sp|Q7V0A5|MURD_PROMP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33640288|emb|CAE19823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 473

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 131/384 (34%), Gaps = 42/384 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +  +    I V           ++ +A         I ITG+ GKTT   +L+  L
Sbjct: 92  DHKTIIKLKERGIVVI---------GEINIAWESLKNINWIGITGTNGKTTVTHLLSHIL 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                     G+    +   +  +    ++D+ + EL       I   TH ++P I + T
Sbjct: 143 RENNLFAPFAGNIGTPL-CEIAYSTKSKNIDWIVAELSSFQ---IEIATHCIKPKIGIWT 198

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           T  P HL     ++     K  + +  E     + +      E  K+  + + I T  + 
Sbjct: 199 TFTPDHLDRHKTLDNYFKIKNSLLKQSEFRIYNYDDQYLK--ENFKSLLNGIWITTNPNV 256

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             S + D+ +       E+    + L+   ++        H  QN+L+ +     +    
Sbjct: 257 SDSDHCDYWINNENFIVERREKLLSLKNFKLKGN------HNTQNLLLAVAAARKIGLST 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +    AL  +        R      +    +I++S   N  S  A I+ +       +G 
Sbjct: 311 ERIKNALLSYE---QLPHRMETIFQRDELEIINDSKATNFDSSVAGINAI-------KGS 360

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYS 427
            I + G   + G+      I+  ++++      V+L G     LK  +        +   
Sbjct: 361 PIIISGGRLKNGDS-----IEWVKIINK-KAKAVFLFGESSQTLKKLILEGGFKNDILTF 414

Query: 428 ETMDGLFLFIQSSLVDG--DVVVV 449
             +  +  +  S + +   + ++ 
Sbjct: 415 NDLSEVINYAYSYIKNNQSETLLF 438


>gi|306820583|ref|ZP_07454214.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551400|gb|EFM39360.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 452

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 121/403 (30%), Gaps = 27/403 (6%)

Query: 53  GH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           GH  D I   + K      V  D    I +  + +  V+  +  L  +            
Sbjct: 51  GHNKDHITSDIDKVVFTAAVKQDNEEIIKTKELGIDLVERSV-FLGSIMKEYENS----- 104

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  M+T+     +K    +               +  +V+ G  ++ +S
Sbjct: 105 IAIAGTHGKTTTTSMITLVFDKAEKNPTSLIGGM--------FKNIGGNVEIGNSDIFIS 156

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P +AVIT I   HL  F  + +I ++  +    +++ G +  N DD 
Sbjct: 157 EACEYVDSFLQFYPKVAVITNIEEDHLDYFEDLSQIKNSFLKFANQVKEGGFVIANGDDE 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                            ++ G     D                            +  G 
Sbjct: 217 NVRDTLKDCKRNVYYYGFNEGNDFIIDNLEFDDFGYPCFDIFYANDGVLIDNYKLNVFGK 276

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES----- 345
           H   N    +    +L  + +    A+  F     R +          F           
Sbjct: 277 HNVYNATSAIVSACMLDIEKEDIKNAIEKFTGVGRRFEYIGEKDGVRVFDDYAHHPTEIK 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHV 404
              +           S   PH   R  A+  +  E  + +  +   D+    +   I   
Sbjct: 337 STLDAIKSLKKNRFFSIFQPHTYTRTKALFKEFVECFDETDIAIFADI--YAAREPIDET 394

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  +   +   R    +Y ++ D +  F++ +  DGD++
Sbjct: 395 V---SSSMLCDEVNRRGKDAYYFDSFDKIVQFLRENANDGDLI 434


>gi|297539796|ref|YP_003675565.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
 gi|297259143|gb|ADI30988.1| UDP-N-acetylmuramate [Methylotenera sp. 301]
          Length = 455

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 127/416 (30%), Gaps = 49/416 (11%)

Query: 69  VVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV+    ++  I +  +P             LA          ++A+ G+ GKTTT  ML
Sbjct: 70  VVSRGNPLMEEILNQGLPYISGP------QWLAENVLQ--GKWVLAVAGTHGKTTTSSML 121

Query: 127 TIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFL-- 178
              L          IG    + GV   L + P         F + E              
Sbjct: 122 AWVLEYAGLAPGFLIGGVPENFGVSARLPQTPKQDAKSISPFFVIEADEYDTAFFDKRSK 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F  +  I      +   + + G +  N        L+  
Sbjct: 182 FVHYRPRTAVLNNLEFDHADIFDDLAAIEKQFHHLVRTVPQQGLVVSNKQ----ASLQRV 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   +  FG +   + Q    +      +  V    +   +    +G H   N L 
Sbjct: 238 IDKGCWSNLEYFGSADGWEVQNVDAQ----GRFDVVFKGERQGNLSWDILGEHNRMNALA 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +      AI+ALS F   + R +      +      F     + +   A +++
Sbjct: 294 VIAAARHVGVAPCIAIEALSEFKNVKRRMEIKGVVNDITVYDDFAHHPTAIDTTVAGLRS 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-L 414
            +     ++          LG M              A   SL     V+  G ++    
Sbjct: 354 KVGKARILAVLEPRSNTMKLGVMKN------------ALPASLKEADLVFCYGANLGWDA 401

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
            +AL          E ++ +   I  +   GD V+V  SN  GF     ++++ + 
Sbjct: 402 AEALSTIKDKASVYEDLNTMVAAIAKAAKPGDYVLV-MSNG-GFGGVHQKILDAIK 455


>gi|38234172|ref|NP_939939.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium diphtheriae
           NCTC 13129]
 gi|48428297|sp|P61677|MURC_CORDI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|38200434|emb|CAE50122.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium diphtheriae]
          Length = 477

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 131/414 (31%), Gaps = 39/414 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +    + +IPV    D    L +L            + I G+ GKT+T  M  +AL
Sbjct: 83  DNPELQEARANNIPVIRRSD---LLGELMEDH------QQVLIAGTHGKTSTTSMAVVAL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVI 189
            +  K  +          +               + E   S    +R+     +P IAV+
Sbjct: 134 QAAGKDPSFAIGGQ----LNKAGTNAHDGTGKAFVAEADESDASLLRY-----KPDIAVV 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I P HL  F   E       +  E ++  GT+ +  DD     L  K         Y 
Sbjct: 185 TNIEPDHLDFFKTSEAYFKVFDDFAERVQPGGTLVVCLDDPHAAALGEKFKDRMTVRGYG 244

Query: 250 FGKSKNADF-----QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              +           +   +     +   + +   +++V+    G+HM  N    L    
Sbjct: 245 SPAAAQQYPDVAFTVVEHMEVGPAGTRARITVGDDTVDVIMRIPGHHMVLNACAALTAGV 304

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A+++     +S F     R + +       F         A+  +   A+   ++  
Sbjct: 305 TAGAELERLAAGISDFSGVRRRFEFHGRVSGGAFHDAEVYDDYAHHPTEVTAVLKAARQQ 364

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLAL 414
               G    V+     +   +  F  + AE LSL +   V L           G     +
Sbjct: 365 QEARGIGRVVVAFQPHLYSRTMEFAAEFAEALSLAD-HAVILDIFGAREQPVEGVDSRII 423

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            D +  +I V +      +   ++      D++V   + S       ++  L E
Sbjct: 424 SDKM--TIPVVFEPNFSAVAAQVKKIAQPNDIIVTMGAGSVTLLADEILTALRE 475


>gi|85707193|ref|ZP_01038279.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
 gi|85668247|gb|EAQ23122.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           217]
          Length = 465

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 111/401 (27%), Gaps = 37/401 (9%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--A 108
           A+ + A L+V     +  +      V          VD D+      LA           
Sbjct: 63  ALDRVASLIVS--PGIPHLYPAPNRVIVAAQAAGVPVDNDIGLFFRSLATDDWGGFDVTP 120

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IA+TGS GK+TT  ++   L    +T         +IG  +     P D    + EL 
Sbjct: 121 KVIAVTGSNGKSTTSALIHHVLVEAGRT----AQLAGNIGRGVLDIDPPEDGGVVVLELS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                  R LT    P +AV T  +P HL   +G+    +AK  +F        +    +
Sbjct: 177 SYQTDLARALT----PDVAVFTNFSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGVDE 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                L    +       +                             +      +    
Sbjct: 233 PEGQYLAGQMAEGPNDDRVIRISVDHKLTGSGWSVFARKGFLSEYRHGRQVGSIDLRGVK 292

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   + N        +             +  H   G   R +    +     +++S   
Sbjct: 293 GLPGSHNHQNACAAYAACRTLGLAPRVIEAGLHSYAGLPHRSQRVAEKDGIIFVNDSKAT 352

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  S   A+     I     G      G +  +                L ++   ++ G
Sbjct: 353 NVDSALKALQAFENIRWICGGLEKD--GGLAGLAPG-------------LAHVRKAYVIG 397

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                   AL  ++      TM        S    GDVV++
Sbjct: 398 REAAGFARAL-GTVESEVCTTMAKAVASAMSDAESGDVVLL 437


>gi|254391589|ref|ZP_05006788.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces clavuligerus ATCC 27064]
 gi|197705275|gb|EDY51087.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Streptomyces clavuligerus ATCC 27064]
          Length = 173

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +  +L   +         +  V GI+ DSR++ P + + A+ G    G DF
Sbjct: 61  SLGELAARLGVSDPAAD-EVTVTGITHDSRAVRPGDVYAALPGARLHGADF 110


>gi|134095973|ref|YP_001101048.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Herminiimonas
           arsenicoxydans]
 gi|133739876|emb|CAL62927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Herminiimonas
           arsenicoxydans]
          Length = 498

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 132/420 (31%), Gaps = 45/420 (10%)

Query: 52  DGHDFILHAVQKG-------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           DG DF+  AV  G       A L+        +     IP++G  ++      LA     
Sbjct: 66  DGIDFV--AVSPGLMPERELAALI-------PAAEEKEIPLWG--EIELFAQALAALKEE 114

Query: 105 R-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           R     +IAITG+ GKTT   ++   L         +    +   +      +  D    
Sbjct: 115 RNYTPKVIAITGTNGKTTVTSLVG-LLCQRAGLTVQVAGNISPAALDRLDQAVASDALPQ 173

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++ L +S        T+ ++  +A +  +   HL     +   A  KA IF         
Sbjct: 174 VWVLELSSF--QLHFTYSLQADVATVLNLTQDHLDWHGDMAAYADDKARIFGSNTIRVLN 231

Query: 224 FLNYDDSFF-------------ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             +                   E  +A    L  +    +     A+ +L + ++  +  
Sbjct: 232 RDDARVMQMALPSAAVITFGADEAGQANCFGLADENGMRWLSVAVAEEELPQKRRKKDNV 291

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + +  +           G H A N L  L +   +       +  L  +H       R 
Sbjct: 292 ELAISTKKLMPVDALKIRGQHNAINALSALALCRAIGLSFAQLLHGLREYHG---EPHRV 348

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              +        D+S   N  +  AA++ L      G    + + G   +  + S     
Sbjct: 349 EHVMTIAGVEYYDDSKGTNVGATVAALNGLGVSQDGGAKHLVLIAGGDGKGQDFSP-LAD 407

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +A+         V L G    +++ A+    + +    T++            GD V++
Sbjct: 408 PVAKYARA-----VVLIGKDAASIRAAIAATGVELIDCTTLEEATQKAAELAQAGDAVLL 462


>gi|33151978|ref|NP_873331.1| UDP-N-acetylmuramate--L-alanine ligase [Haemophilus ducreyi
           35000HP]
 gi|38372292|sp|Q7VMY1|MURC_HAEDU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33148200|gb|AAP95720.1| UDP-N-acetylmuramate--alanine ligase [Haemophilus ducreyi 35000HP]
          Length = 475

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 142/405 (35%), Gaps = 44/405 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VVV++ +  +   ++      IPV        A   LA   R R     IA+ G+
Sbjct: 76  AGASVVVVSSAIEENNPEITAAKSARIPVIQ-----RA-QMLAEIMRFRHS---IAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML++  +        +                     + I E   S    + 
Sbjct: 127 HGKTTTTAMLSMIYTEAGLDPTFVNGGLVKS---AGKNAHLGASRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P ++V+T I P H+  +    E++ +   +    L   G   +  DD     +
Sbjct: 184 -----LQPMLSVVTNIEPDHMDTYGGDFEQMKTIYVKFLRNLPFYGLAVMCADDDVVMEI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +      + + S+G + NAD+++  ++Q   +  +  +    + ++VV +  G+H A 
Sbjct: 239 APQV----GRQVISYGFNANADYRIENYQQTGFQGHYTVICPNNERLDVVLNVPGHHNAL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    L +        D  + AL+ F     R              ++ + Y  +P  + 
Sbjct: 295 NATAALAVAKEEGIANDAILAALADFQGAGRRFDPLGTFKRPNGTVMLIDDYGHHPTEIA 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV 411
             I    Q   H       V+         ++    D   VLS  ++     V+ +G + 
Sbjct: 355 VTIKAARQGWQHK----RIVMIFQPHRYSRTRDLFDDFVNVLSKVDVLIMLDVYAAGENA 410

Query: 412 ------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                  AL  ++     V          L   +   + D D+++
Sbjct: 411 IVKADSKALCRSIRNLGKVDPILVSDTSQLGEVLDQIIQDNDLIL 455


>gi|307244134|ref|ZP_07526252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492505|gb|EFM64540.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus stomatis DSM 17678]
          Length = 454

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 93/317 (29%), Gaps = 38/317 (11%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L       +  RP ++ +  +   H++    +E  A AKA IF        
Sbjct: 162 LVIELSSFQL----EAVYDFRPEVSTVLNLTEDHMNRHHTMENYAKAKANIFAKQTPESV 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD     +     A  +                 K     +       +      
Sbjct: 218 CVLNYDDPITRDMGNTCQARPVYFSRQSRPEAGIYLDDNKNIIAVKDGREVEIVN----A 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N +  +G+      D +   K L+ F   E R               +
Sbjct: 274 EDLSLPGGHNLENSMAAIGLCLHFGIDKEIIKKVLTTFKAVEHRL---EYVNTVNGVVYV 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP S   A+           G            G    S   +L ++   Y + 
Sbjct: 331 NDSKGTNPDSTIKAVQSYKTPIILIAG------------GYDKGSDFRELFDIAVNY-VR 377

Query: 403 HVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
            V + G     + D   ++    ++  +++    +         DVV++    +S     
Sbjct: 378 TVLVIGQTADLIADTAFKAGIKEIYKLDSLKEAVIKASQIADKDDVVLLSPACASWGMYK 437

Query: 453 ----NSCGFYRLINLLL 465
                   F  ++N +L
Sbjct: 438 NYEERGQEFKDIVNNIL 454


>gi|325294545|ref|YP_004281059.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064993|gb|ADY73000.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 458

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 138/433 (31%), Gaps = 54/433 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGAL 95
            F   K  +  G           A LV+ ++ +           +L IPV    D+    
Sbjct: 52  VFIGHKAENVHG-----------ANLVIHSSAVKFDNVELQEAKNLGIPVIPRADI---- 96

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L+   R +     +A+ G+ GKTTT  M+                    + +   +  
Sbjct: 97  --LSDIMRFKEG---VAVAGTHGKTTTSSMIATIFHIAGLKPTI--LVGGRLSILGGVNA 149

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D ++ + E   S           + P  +VIT I   H+  +   E +  A  +   
Sbjct: 150 QSGDGNWLVAEADES-----DGTFLKLTPTFSVITNIDADHVDYYGSFENLKEAFLDFAN 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   G +FL  +    + +    +   +     +G S+  D   ++       +  +V 
Sbjct: 205 RVSFYGKVFLCGECQNVKEIVGSIYKRKLI----YGFSEKFDLYAKEIVPVGLGTIFDVY 260

Query: 276 LQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            + K    V  +  G H   N L  +G+   +    +   ++L +F     R +      
Sbjct: 261 YKSKKLGRVKLNVPGKHNILNALGAIGVSLEVGVSFNQIAESLEMFRNANRRMELKGTVN 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHIDL 392
                    + Y  +P  ++ +      +      RRI VL         +      + +
Sbjct: 321 G----ITFIDDYAHHPTEIETSYKA---LKSSFPDRRIVVLFQPHRFSRTNLLWKEFVKV 373

Query: 393 AEVLSLYNISHVWLSGFH-VLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            + +    IS ++ +G   +  +    L R     Y  ++      I+  L  GDV +  
Sbjct: 374 LKEIDNLFISDIYPAGEKPIKGINAKNLARECGAVYCGSLKKACRTIKLELKPGDVFL-- 431

Query: 451 SSNSCGFYRLINL 463
              S G   +   
Sbjct: 432 ---SMGAGDVTKA 441


>gi|206561753|ref|YP_002232518.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
 gi|198037795|emb|CAR53739.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia J2315]
          Length = 461

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 116/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAVSLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++   I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIDTTIAGLRARIGRQNARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|182435249|ref|YP_001822968.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|229620435|sp|B1VWF9|MURC_STRGG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|178463765|dbj|BAG18285.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 466

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 140/400 (35%), Gaps = 41/400 (10%)

Query: 65  AGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VVV++ + A        G L++PV    D   AL  L    R       IA+ G+ G
Sbjct: 70  ASCVVVSSAIRADNPELLRAGELAVPVVHRSD---ALASLMNGLRA------IAVAGTHG 120

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML +ALSS+    +     +              + D  + E   S        
Sbjct: 121 KTTTTSMLAVALSSLGLAPSYAIGGDLEG---PGTNATHGEGDIFVAEADES-----DRS 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P +A++  +   H +N++ ++EI  +       +   GT+ ++ D      L  +
Sbjct: 173 FQKYDPEVAIVLNVELDHHANYASMDEIYDSFETFVGKIVPGGTLVVSADQPGAVELTRR 232

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
              L    + ++G +++AD ++ K       S + V L GK +       G H A N + 
Sbjct: 233 VRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNGKFLTFTVSVPGAHYAHNAVA 292

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L         AL  +   + R +       +     + +SY  +P  M A + 
Sbjct: 293 ALAAGVALGIPAHNLASALGSYTGVKRRLQ----LKGEAAGVQVIDSYAHHPTEMTADLE 348

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
               +       RI V+     +   +Q    ++ + L+  + S V            G 
Sbjct: 349 A---MRGAAADARILVVFQPH-LFSRTQELGTEMGQALARADASVVLDIYPAREDPIPGI 404

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               + DA       V        +   +      GD+V+
Sbjct: 405 TSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSGDLVL 444


>gi|168187060|ref|ZP_02621695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
 gi|169295070|gb|EDS77203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum C str. Eklund]
          Length = 458

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 122/404 (30%), Gaps = 57/404 (14%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           +  +    +    +            A I  ITGS GKTTT  ++   L +        G
Sbjct: 91  NPALVKAKNSGAYITSEMEEFIKYCPARIFGITGSDGKTTTTTLVYNILMTEGYRTWVGG 150

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           +  N +           + D  + EL    L  +    +      A++T ++P HL    
Sbjct: 151 NIGNPL---FASIEEMKEEDKVVLELSSFQLMTMEEEINC-----ALVTNLSPNHLDIHK 202

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
            +EE   AK  +F+  E    + LN D+     L  ++              K +  +  
Sbjct: 203 DMEEYVDAKKNVFKYQENKDLLVLNKDNDITNSLTEEAKGRV---------MKFSRKEEI 253

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           K         + +  +           G H  +N+L    +VS   +    A  A +   
Sbjct: 254 KDGAYLNGDKLVLLGKEICTLGDIKLKGMHNVENLLAAFCLVSEDASIESMAKVATTF-- 311

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMC 379
              G   R             ++S  ++P    A +    +      G          + 
Sbjct: 312 --TGVQHRCEFVKEIDGVKYYNDSIASSPTRTIAGLRAFEKPVILIAGGYDKHIPFEPLA 369

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDG 432
           E G                  I  + L+G     +KDA  +       SI ++  E  + 
Sbjct: 370 EEGYD---------------KIKALVLTGLTKDKIKDAFDKVMKDRGISIPIYMEEGFNE 414

Query: 433 LFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                +    +GD+V +    +S             F  ++N L
Sbjct: 415 AIYRAKDIAKEGDIVTLSPACASFDMFPNFEIRGNRFKEIVNKL 458


>gi|29375575|ref|NP_814729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis V583]
 gi|227555103|ref|ZP_03985150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257418583|ref|ZP_05595577.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|30179794|sp|O07108|MURD_ENTFA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29343036|gb|AAO80799.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis V583]
 gi|227175771|gb|EEI56743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis HH22]
 gi|257160411|gb|EEU90371.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T11]
 gi|315168041|gb|EFU12058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1341]
 gi|315574263|gb|EFU86454.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309B]
 gi|315581582|gb|EFU93773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0309A]
          Length = 456

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DNLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|315633818|ref|ZP_07889107.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
 gi|315477068|gb|EFU67811.1| UDP-N-acetylmuramate--L-alanine ligase [Aggregatibacter segnis ATCC
           33393]
          Length = 476

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 78/447 (17%), Positives = 152/447 (34%), Gaps = 54/447 (12%)

Query: 44  FAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
            A  G       FI H  +   GA +VV+++ +      +       IPV        A 
Sbjct: 59  LAYAGAKV----FIGHKAENITGASVVVISSAIRDDNPEVVAAKEARIPVIQ-----RA- 108

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA   R R     IA+ G+ GKTTT  M+++  +        +               
Sbjct: 109 QMLAELMRFRHG---IAVAGTHGKTTTTAMVSMIYAEAGLDPTFVNGGLVKS---AGTNA 162

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIF 214
                 + I E   S    +      ++P I+++T I P H+       +E+        
Sbjct: 163 HLGRSRYLIAEADESDASFLH-----LQPMISIVTNIEPDHMDTYHGDFDEMKQTYVNFL 217

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWME 273
             L   G   L  DD+    L  +      + + ++G S+NAD+++  ++Q   +  +  
Sbjct: 218 HNLPFYGLAVLCADDADLMSLVPQV----GRQVITYGFSENADYRIEDYQQTGFQGHYTV 273

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G+ ++V+ +  G H A N    L +        +  + AL+ F     R  +    
Sbjct: 274 ICPSGERIDVLLNVPGRHNALNATAALAVAKEEGIKNEAILAALADFQGAGRRFDQLGQF 333

Query: 334 LNQGFFTLIDESYNANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           +      ++ + Y  +P  +               ++    PH   R   +  D  ++  
Sbjct: 334 IRPNGKVMLVDDYGHHPTEVGVTIQAARQGWENKRIVMIFQPHRYSRTRDLFDDFVQVLS 393

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
              +  +          I      G    AL  ++     V          L   +   +
Sbjct: 394 QVDALIMLDVYPAGEAPI-----VGADSKALCRSIRNLGKVDPVLVSDTAQLGEVLDHLI 448

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEF 468
            DGD+++ + + S    +L   L+E +
Sbjct: 449 QDGDLILAQGAGSV--SKLSRQLVERW 473


>gi|251792021|ref|YP_003006741.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Aggregatibacter aphrophilus NJ8700]
 gi|247533408|gb|ACS96654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aggregatibacter
           aphrophilus NJ8700]
          Length = 438

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 119/374 (31%), Gaps = 50/374 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   I+AITGS GK+T   ++     +   +         +IG+P     +    D
Sbjct: 98  FCREADKPIVAITGSNGKSTVTTLVAEMAKAGGLSVGMG----GNIGIPALSL-LNQQHD 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H++ +  +++   AK +I++  +   
Sbjct: 153 LYVLELSSFQL----ETTYSLKAMAATVLNVTEDHMNRYVDLQDYRHAKLKIYDNCQTAV 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +           +  +        + K+      L    +              + 
Sbjct: 209 INGEDALTLPTTQRPQQQVSFAENNADYWLKTDGHHTYLMACNESILTIDEMKLSGRHNY 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 I    A  + ++    ++           L+                       
Sbjct: 269 MNALAAIALAQAAGVNLSGIQTALREFGGLDHRFQLAHMA---------------DGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L       +G+   +LG   +  + S     +LA +++  +I
Sbjct: 314 INDSKATNVGSTVAALTGLQV-----KGKLHLLLGGDGKGADFS-----ELATLINQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
              +  G     L    P+S      +TM+     I+  L  GD+V++    +S      
Sbjct: 364 -FCYCFGQDGKQLAALSPQS---QLFDTMEQAIAAIRLQLQAGDMVLLSPACASLDQFPC 419

Query: 453 ---NSCGFYRLINL 463
                  F RL  L
Sbjct: 420 FEARGDEFTRLAQL 433


>gi|148284352|ref|YP_001248442.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Boryong]
 gi|146739791|emb|CAM79666.1| UDP-N-acetylmuramate--alanine ligase [Orientia tsutsugamushi str.
           Boryong]
          Length = 502

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 78/408 (19%), Positives = 136/408 (33%), Gaps = 38/408 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GAG+VV+++ +  +       +     ++     LA   R +     IAI+GS GKTTT
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAILAKIPIISRAEMLAELMRSKVA---IAISGSHGKTTT 139

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++     +       I     +            D D+ I E   S           +
Sbjct: 140 TALIACIFEACGLHPTVITGGIMNN---RATNAYLGDGDYFIAEADES-----DATFIKI 191

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IAVIT I   HL  +   + + SA  +    L   G      DD   + L AK  + 
Sbjct: 192 PATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQNLIAKITSR 251

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSW-----MEVQLQGKSMEVVHHGIGYHMAQNML 297
            I T     K+ +                          +    +V    +G H   N L
Sbjct: 252 KIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLPALGKHNILNSL 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + I   L  D++        F     R       + +     + + Y  +PA + A I
Sbjct: 312 AAIAIAVELNLDLNIIKDGFKNFKGIARRF----TKIGEYNNITVIDDYAHHPAEIIATI 367

Query: 358 SVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV- 411
                I+   +GR IAV        + ++   S+  H    + +    IS ++ +G    
Sbjct: 368 DTARCIADKQQGRVIAVFQPHRYSRLKQL--FSEFTH--CFQRVDQLYISQIYDAGEQET 423

Query: 412 -----LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKS 451
                ++L +A+    H  Y      +D L   I   +   D++++  
Sbjct: 424 YNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPCDIILLMG 471


>gi|293392861|ref|ZP_06637179.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
 gi|291424720|gb|EFE97931.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
           odorifera DSM 4582]
          Length = 439

 Score = 60.6 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P+    +  +  
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAV----GVGGNIGLPVLEL-LRQEYQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ +    A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTYSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG    AD       +   ++W+ V  +   
Sbjct: 210 VVNADDALTMPVR--------GADPRCISFG----ADVGDYHLNRQLGETWLRVHGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ +     R    +  L+     
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVNIPRASSLTALTTYAGLAHRF---QRVLDHNGVC 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LTRYLQGDH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P       ++TM+     I + +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAQLAQLRPDV--ATQTDTMEQAMRAIAAVVQPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEVRGNEFARLAQEL 437


>gi|149910628|ref|ZP_01899266.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
 gi|149806356|gb|EDM66331.1| UDP-N-acetylmuramate--L-alanine ligase [Moritella sp. PE36]
          Length = 485

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 139/404 (34%), Gaps = 46/404 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T +  +   +       IPV         +  LA   R R     IAI G+ G
Sbjct: 79  ASVVVVSTAIDLTNPEIVAAHENRIPVIK----RAEM--LAELMRFRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  ++T            +                     + I E   S        
Sbjct: 130 KTSTTALVTGIYHEAGLDPTFVNGGLVKST---GTNAGLGTSRYLIAEADES-----DAS 181

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             L++P +AVIT I   H+  + G           F         +        + +  K
Sbjct: 182 FLLLQPMVAVITNIEADHMDTYGGDFAKLEKTFVDFLHNLPF---YGLAVMCADDAVIEK 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                 + + ++G ++NAD ++  + Q   +S   +  + +    V  +  G H A N  
Sbjct: 239 LIPDVGRQVVTYGFAENADVRIIDYVQKGHKSHFTICRKDRDDLRVSLNSPGQHNALNAT 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + +    D    + AL+ F     R ++     +     ++ + Y  +P  +   I
Sbjct: 299 AAVAVATEDGIDDRAIVTALANFAGTGRRFEQLGEFDSGAGNVMLVDDYGHHPTEVDVTI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
           +     +   E R ++V          ++  + D A VL    +  ++L           
Sbjct: 359 TAAR--AGWPEKRLVSVFQPHRY--TRTRDLYEDFANVL--SKVDLLFLLEVYPAGEEPI 412

Query: 408 -GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
            G    +L  ++ +  ++   +  + D +   +   L DGD+V+
Sbjct: 413 PGADSRSLCRSIRQRGNIEPIFVSSPDEIPAILAEHLQDGDLVL 456


>gi|323480232|gb|ADX79671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis 62]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|315029682|gb|EFT41614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4000]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|257421242|ref|ZP_05598232.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
 gi|257163066|gb|EEU93026.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis X98]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|257081246|ref|ZP_05575607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|257083904|ref|ZP_05578265.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300859813|ref|ZP_07105901.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|256989276|gb|EEU76578.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis E1Sol]
 gi|256991934|gb|EEU79236.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis Fly1]
 gi|300850631|gb|EFK78380.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TUSoD Ef11]
 gi|315144378|gb|EFT88394.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2141]
 gi|315162942|gb|EFU06959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0645]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|229546840|ref|ZP_04435565.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|229548934|ref|ZP_04437659.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|255971447|ref|ZP_05422033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256617917|ref|ZP_05474763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256761751|ref|ZP_05502331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256852646|ref|ZP_05558017.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256962581|ref|ZP_05566752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|257089402|ref|ZP_05583763.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|307272007|ref|ZP_07553273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|307290045|ref|ZP_07569969.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|312904555|ref|ZP_07763713.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|229305955|gb|EEN71951.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis ATCC 29200]
 gi|229308005|gb|EEN73992.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX1322]
 gi|255962465|gb|EET94941.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T1]
 gi|256597444|gb|EEU16620.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ATCC 4200]
 gi|256683002|gb|EEU22697.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T3]
 gi|256711991|gb|EEU27028.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T8]
 gi|256953077|gb|EEU69709.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis HIP11704]
 gi|256998214|gb|EEU84734.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis CH188]
 gi|306498887|gb|EFM68381.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0411]
 gi|306511302|gb|EFM80306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0855]
 gi|310632068|gb|EFQ15351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0635]
 gi|315156842|gb|EFU00859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0043]
 gi|315157628|gb|EFU01645.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0312]
 gi|315577391|gb|EFU89582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0630]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTVE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|167856476|ref|ZP_02479193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
 gi|167852399|gb|EDS23696.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           parasuis 29755]
          Length = 432

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 117/348 (33%), Gaps = 43/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITGS GK+T   + T                  +IGVP     +  D +
Sbjct: 100 FCREAKAPIIAITGSNGKSTVTTLTTEMAKQAGVKVGMG----GNIGVPALSL-LKGDYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  +  IE+   AK +I+       
Sbjct: 155 LYVLELSSFQL----ETTYSLKAKAATILNISEDHMDRYESIEDYRQAKLKIYHH----- 205

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                          A++  +  +   +F +      +    K     +       G   
Sbjct: 206 ---------------AENVIVNGEDPQTFPEQAVGSLKKFAEKDAEYTACNGELYSGDEA 250

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +      N++  L  +S+  A        +       G   R++          
Sbjct: 251 VIAIDELKITGRHNVMNALASMSLAEATGVDRSGIVKALQSYSGLDHRFQLVPTNDGVRW 310

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA++ L       EG    +LG     G+   +   +L   ++  N 
Sbjct: 311 INDSKATNVGSTVAALNGLQV-----EGTLYLLLG-----GDGKDADFSELKPFINQPN- 359

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  +  G     L    P S+     ETM      I+  L  GD+V++
Sbjct: 360 TVCYCFGKDGAELAALTPNSV---LVETMAQAVAQIRLRLKAGDMVLL 404


>gi|85858524|ref|YP_460726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
 gi|122063269|sp|Q2LR50|MURD_SYNAS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|85721615|gb|ABC76558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophus
           aciditrophicus SB]
          Length = 453

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 90/290 (31%), Gaps = 25/290 (8%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + E+    L  +      V    +++      H++     E   + K  IF    K
Sbjct: 161 ADCAVVEISSFQLQWVDQFHAFV----SILLNTTCDHVNYHGSFEAYRAVKERIFNNQGK 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                LN D+    +L   S +  +    +    +   +Q +    C +    +      
Sbjct: 217 QDVAILNADEPDSAVLAE-SLSSPVFFFSTTKMVERGLYQEKDRLICLDGEGKQEFYPLS 275

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N++  +          +  I A+S F     R +  R        
Sbjct: 276 M----IRLPGAHNVENVMAAILASRACGCSPENVINAISGFSGIAHRIEFTREIGGVK-- 329

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              D+S   N  ++K AI   S          I ++G   + G+       +    L   
Sbjct: 330 -FYDDSKGTNVGAVKRAIETFSD-------PIILLMGGRDKDGDF------ETLSALLQD 375

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +++ +   +    + ++       +     GDVV++
Sbjct: 376 RVKALVIFGEARERIQERIGGIVPTVLTPSLKEAIAAARRQACAGDVVLL 425


>gi|60390567|sp|Q899G5|MURD_CLOTE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 458

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 121/382 (31%), Gaps = 53/382 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A +  ITGS GKTTT  ++   L +   T    G+  N +    T        D
Sbjct: 111 FIKYCPAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIGNPL---FTKIEEIKKDD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+         +A++T ++P HL     +EE   AK  IF+   +  
Sbjct: 168 KVVLELSSFQLMSIKEPI-----EVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQREND 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N D+   + ++ +    G    +S  +                +       +    
Sbjct: 223 LLVINEDNKITKSMEEEC--RGRLLKFSMKEKLKEGSFYYNEDLYINE-------KKVCN 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L     VS  ++       A +      G   R            
Sbjct: 274 VSEVKLKGMHNVENLLAAFSCVSEDSSIDSMREVAKNFN----GVEHRLEFVKEIQEVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    AA+    +               +   G   +    ++     + +I
Sbjct: 330 FNDSIASSPTRTLAALQSFDR-------------PVILIAGGYDKKISFEVLAKEGISHI 376

Query: 402 SHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            H+ L G     +++A  + +        +    +++      + +   GDVV +    +
Sbjct: 377 KHLILLGDTKYKIEEAFKKVMRDSSEDLPISICNSIEEAINIAKENGESGDVVTLSPACA 436

Query: 452 S---------NSCGFYRLINLL 464
           S             F  +I  L
Sbjct: 437 SFDMFKNFEERGNKFKSIIRNL 458


>gi|254476425|ref|ZP_05089811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
 gi|214030668|gb|EEB71503.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria sp. R11]
          Length = 468

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 119/408 (29%), Gaps = 45/408 (11%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRS 106
             ++ GA      +V +  +  +     PV          VD D+      +A     + 
Sbjct: 57  DLLKSGAFDDVAALVVSPGIPHLYPKPNPVIRAALVAGVPVDNDIGLFFRSVATRGWEQY 116

Query: 107 K--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                I+A+TGS GK+TT  +L   L    +          +IG  +     P      +
Sbjct: 117 DQAPRIVAVTGSNGKSTTVALLHHILQEAGR----ESQLAGNIGRGVLDIDPPGSGGVVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL        R LT    P +AV T ++P HL   +G+    +AK  +F        I 
Sbjct: 173 LELSSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAII 228

Query: 225 LNYDDSFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +D        L   +    +  I +  K     +Q+   K    +     Q     +
Sbjct: 229 GVDEDEGLYLAGQLSEAASDDRVIRISASQKLTGPGWQVFARKGFLSEYRKGRQAASIDL 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +    G H  QN          L         AL+ +     R    +          
Sbjct: 289 RQMQGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRS---QTIATHAGVRY 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S   A+     I     G          E G  +               +
Sbjct: 346 VNDSKATNLDSAAKALGAFENIRWICGGLE-------KEGGLDALRG--------QAGKV 390

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ G        A+   +      TM        +    GD V++
Sbjct: 391 RKAYVIGREAAGF--AMQLDVEAEVCITMAQAVARASAEAEPGDTVLL 436


>gi|94501898|ref|ZP_01308408.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
 gi|94425951|gb|EAT10949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanobacter sp.
           RED65]
          Length = 446

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 118/375 (31%), Gaps = 44/375 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A IIAITGS  K+T   ++               +   ++G P     +  D+D
Sbjct: 104 FAEAANAPIIAITGSNAKSTVTTLVGEMAKQ----CGLKAAVGGNLGTPALEL-LNSDID 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L       +A +  I+P HL  +   E     K +IF G EK  
Sbjct: 159 VYVMELSSFQLEATEHLNA----KVATVLNISPDHLDRYDSYEGYYQTKYKIFNGCEKAV 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +       L           +I   G     D   + W+   E   +    Q    
Sbjct: 215 INLDDNLAQPKTL---NCPEQIGFSIDGKGADFVLDRTAQPWQLIVEGDALLSVDQ---- 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +      D+D  +KAL  F   + R +  +          
Sbjct: 268 ---LKIKGLHNYSNALAALALGHGFGLDMDGMLKALKSFPGLDHRCQWIKQVDEVD---F 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +     + L  + P    R + +LG + +  +        +   +    +
Sbjct: 322 YNDSKGTNVGAT---EAALKGLGPEYAKRIVLMLGGVGKDADF------KVLRPVIDQYV 372

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL-VDGDVV---------VVKS 451
           S V + G     +   L   + +  +E+ +  F     +    G VV         +   
Sbjct: 373 SKVIVYGQDQDIIAKDLS-GVDLDRAESFEQAFEMAYRNADHKGAVVFSPACASFDMFSG 431

Query: 452 --SNSCGFYRLINLL 464
             +    F  ++  L
Sbjct: 432 FEARGEAFKSMVEAL 446


>gi|126735378|ref|ZP_01751124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
 gi|126715933|gb|EBA12798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           CCS2]
          Length = 466

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 124/405 (30%), Gaps = 44/405 (10%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK-- 107
           + GA      ++ +  +  +  +  PV            +D+       A A+       
Sbjct: 60  KLGAFEDIACLIVSPGIPHLYPVPNPVIAAAWDAEVPVDNDIGLFFRSFATASWDDFDTQ 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IA+TGS GK+TT  ++   L    +          +IG  +       D +  + EL
Sbjct: 120 PRVIAVTGSNGKSTTAALIHHILVENGR----PAQLAGNIGRGVLDIEPAHDGEVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                     L   + P +AV T ++P HL   +G+    +AK  +F        +    
Sbjct: 176 SSYQTD----LARSMTPDVAVFTNLSPDHLDRHAGVGGYFAAKRRLFAEGGPDRAVIGVD 231

Query: 228 DDS---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +         L        +  + S  K     + +   K    +     Q+    + V+
Sbjct: 232 EAEGRYIANQLIEGPGDDRVIRVSSGQKLAGQGWTVFARKGFLSEHRKGRQVGSIDLRVI 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN          L         A+  +     R    +    +   T +++
Sbjct: 292 TGLPGAHNHQNACAAYAACRTLGLGPKGIEAAMQSYPGLPHRS---QVVAERDGVTFVND 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S   A+    ++     G +        E G      H+D        +++  
Sbjct: 349 SKATNVDSAAKALQAFPKVRWICGGLQ-------KEGGLDGLLPHLD--------HVAKA 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ G         L          TMD       +    G+VV++
Sbjct: 394 YVIGREAEDFARQLM-GAEAEVCGTMDVAVSQAAADAQAGEVVLL 437


>gi|257086352|ref|ZP_05580713.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|256994382|gb|EEU81684.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis D6]
 gi|315026969|gb|EFT38901.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX2137]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLIGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L  F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLKNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|84495980|ref|ZP_00994834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
 gi|84382748|gb|EAP98629.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Janibacter
           sp. HTCC2649]
          Length = 502

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 117/366 (31%), Gaps = 35/366 (9%)

Query: 97  KLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R    A   + +TG+ GKTTT +MLT  L +  K          ++G P+  A 
Sbjct: 127 ELAWRMRPLEGAAPWLTVTGTNGKTTTVQMLTSILRAAGKR----AISAGNVGTPILEAI 182

Query: 156 MPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           M  +    I  EL    L         +RP  +V   +AP H+      E+  +AK +++
Sbjct: 183 MDPEPFDAIAVELSSFQLHWSD----SIRPQASVCLNVAPDHVDWHGSYEDYLAAKGKVY 238

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +      ++   +   +  A+         ++ G    +   L            + 
Sbjct: 239 NNTQVACIYNVDDPQTERLVEDAEVQEGCRAVGFTLGTPAPSMLGLVGEVLADRAFVEQR 298

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG---KRYR 331
           +     +  +    G        +    ++         ++A +V    +       R  
Sbjct: 299 RHAAAELATIDDLRGDSPDVAPHLVANALAAAALARAHGVEAGAVRAGLKAFRPEAHRIA 358

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +D+S   NP +  A+++    +     G            G         
Sbjct: 359 HVATLEDVRYVDDSKATNPHAAAASLTAYEHVVWIAGGLLK---------GADVDDLVRT 409

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSET----MDGLFLFIQSSLVD 443
            A  L       V L G     + DAL R       V  ++T    MD +     S    
Sbjct: 410 AAPSLR-----GVVLIGRDRAQIADALARHAPDVPVVDVADTDTGVMDRVVSQAASLAQS 464

Query: 444 GDVVVV 449
           GDVV++
Sbjct: 465 GDVVLL 470


>gi|313682540|ref|YP_004060278.1| hypothetical protein Sulku_1416 [Sulfuricurvum kujiense DSM 16994]
 gi|313155400|gb|ADR34078.1| hypothetical protein Sulku_1416 [Sulfuricurvum kujiense DSM 16994]
          Length = 334

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L   +G  +G         +  D+  +     F A      D    I  A+Q G
Sbjct: 1   MRLENILALSKGSLLGDPAVSVFENVVFDASKVKRGSFFVAYSPE--D----IPEALQNG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           A  V+ +      I    I    VD++  AL KL     L  +  + A
Sbjct: 55  AYGVMFDKPT--QISDSEIAWIKVDNIDNALKKLLRFYLLEKELQVYA 100


>gi|297587603|ref|ZP_06946247.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
 gi|297574292|gb|EFH93012.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna ATCC
           53516]
          Length = 461

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 112/368 (30%), Gaps = 38/368 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L  L    +       I ++GS GK+TT  M+   L   K   + +          +  
Sbjct: 103 FLGALMRNYKYS-----IGVSGSHGKSTTTSMIAKILIDAKVDPSILLGGKLDE---IQG 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + ++ + E        + +      P +A+I  I   HL  +  +  I +     
Sbjct: 155 NVHCGNSEYMLTEACEYKANILNYY-----PSMAIILNIDEDHLDYYKDLNHIVATFIGY 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + LE+     +N DD   E L +    +  + I    +++ AD+ +         +   
Sbjct: 210 MKNLEENSKAIINIDDKNCEPLLS---HIKGEIITFGIENEKADYNIHDITFNENGNPTF 266

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V    K  +     +      N+   +  +                    +   +R    
Sbjct: 267 VISSEKFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYQNLHRRMETV 326

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQ 386
                  +  +             + L  +  H +G+   V          M  + + + 
Sbjct: 327 GFYKGCEVKTDY----GHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKML-LDDFAN 381

Query: 387 SFHI--DLAE---VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSS 440
           +F+   ++       +            H   L + L    ++  Y +T +    +++S 
Sbjct: 382 AFYDCDEVIVTEIYAAREKFDSSI----HSTDLVEKLVKNGVNAKYYKTFEEARDYLRSK 437

Query: 441 LVDGDVVV 448
           + D D+V+
Sbjct: 438 VSDNDIVL 445


>gi|237749090|ref|ZP_04579570.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
 gi|229380452|gb|EEO30543.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes OXCC13]
          Length = 461

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 72/465 (15%), Positives = 141/465 (30%), Gaps = 65/465 (13%)

Query: 15  QGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDM 74
               I    +G +         + P + F             I + V +G         +
Sbjct: 46  GIELINGYDEGQI--------ELKP-DLFV------------IGNVVSRG-------NPL 77

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           + +I +  +P             +           ++ + G+ GKTTT  ML   L    
Sbjct: 78  MEAILNRGLPYVSGP------QWIGEHILN--DKWVLGVAGTHGKTTTTSMLAWILEDAG 129

Query: 135 KTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAVITTI 192
            +    IG    + G+   L        F I           +       RP  A++  +
Sbjct: 130 YSPGFLIGGVPLNFGISARLHGEKESSFFVIEADEYDTAFFDKRSKFVHYRPKTAILNNL 189

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H   FS I  I +    +   +   G + +N  +   E +  +      +     GK
Sbjct: 190 EYDHADIFSDISAIETQFHHLVRTVAGNGRLIVNNREPALERVVERGCWSEKEWFGDEGK 249

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                       +  +  +           V     G H   N L  +     +    + 
Sbjct: 250 DSW------SMAEKDDDDFDVFFDGQYQGTVHWDLTGEHNRLNALAAIAAARHVGVRPEQ 303

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           +I +LS F   + R +          +    + +  +P ++   I+ L + +    G+RI
Sbjct: 304 SIDSLSRFKNVKRRMECRGNVGGITVY----DDFAHHPTAIATTIAGLKKKTASVPGQRI 359

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA------LKDAL-PRSI 422
             +     +   S +  + + +     ++     V+  G           L+ AL P   
Sbjct: 360 LAV-----LEPRSNTMKLGVMKQALPQSLQEADMVFAYGADGGKNGLGWDLEQALLPLGD 414

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                  +D L   I  +   GD V+V  SN  GF  +   +L++
Sbjct: 415 RAKAFSDIDRLVDEIIMAAQPGDHVLV-MSNG-GFGGIHQKILDK 457


>gi|20808924|ref|NP_624095.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
 gi|23821878|sp|Q8R749|MURC_THETN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|20517585|gb|AAM25699.1| UDP-N-acetylmuramate-alanine ligase [Thermoanaerobacter
           tengcongensis MB4]
          Length = 460

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 127/396 (32%), Gaps = 42/396 (10%)

Query: 66  GLVVVNTDM-VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              + + ++       L IP+    D    L  +      +     +A+ GS GKTTT  
Sbjct: 74  TAAIHDDNVEYQKAKELGIPII---DRATLLGLIMKKY--KFG---VAVAGSHGKTTTTS 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++++ L                    +         ++ + E       E         P
Sbjct: 126 LISVILDRAGYD---PTVLVGGEIDAIGGNVRVGKSEYFVTEAC-----EYTDSFLKFYP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +         
Sbjct: 178 YIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDGFVVACKDDANTMHVIK----GLE 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           K I ++G ++ +D+Q +      +   S+                 G H   N L +L +
Sbjct: 234 KNIVTYGINEKSDWQAKDITYDEKGCASFNVYYRGKFIGHFKLSIPGKHNIYNALASLAV 293

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L  D + A + +  F     R +             + + Y  +PA + A +     
Sbjct: 294 TYLLGVDTEKAKEYIKEFKGTHRRFE----VKGVVEGVTVVDDYAHHPAEIHATLEAAKN 349

Query: 363 IS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                      PH   R  A+L D  E  + +    I         +   V         
Sbjct: 350 YPHKRIIAIFQPHTYSRTKALLSDFAESFDAADKIIITDIYAAREKDTGIV-----SSKD 404

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L D    R   V Y +  D +  +++ +  +GD+V+
Sbjct: 405 LVDLIFKRGKDVLYIKDFDSIVEYLKENTEEGDLVL 440


>gi|184201133|ref|YP_001855340.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
 gi|183581363|dbj|BAG29834.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Kocuria rhizophila DC2201]
          Length = 546

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/502 (13%), Positives = 140/502 (27%), Gaps = 66/502 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  +L +                V G+ ++SR + P + + A+ G    G  F   A   
Sbjct: 23  TVEELARLTGARVRAASSGLVGAVTGVVLNSREVQPGDLYAALPGAQVHGARFAADAAAA 82

Query: 64  GAGLVVVNTDMVASIGSLSI--PVFGVDDVLGALNKLAVAARLRSKA------------- 108
           GA  V+ +      +    +  PV   +     +  +A A                    
Sbjct: 83  GAVAVLTDPAGERLLDEAGVSLPVLVSEQPRSWVGPVAAAVYDSHPGEEAGQELFAVTGT 142

Query: 109 --------TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                      AI  ++G TT   ++         T               +L  +  + 
Sbjct: 143 NGKTTTTYFTTAILRALGHTT--GLIGTIEILAGDTPIPSRLTTPEAPHVHSLLALMRER 200

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLE 218
                 + +S           V   +A  T +   HL     +EE   A A+    +   
Sbjct: 201 GITATAMEVSSHALEFHRVDGVHYGVAGFTNLTQDHLDLHGSMEEYFEAKAQLFTRQRTS 260

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----------E 268
           +   +  + D     + +     LG   + +     + D +  +                
Sbjct: 261 RAVVVLSDEDPWSGAMARRAREELGDANVTTVALRGSEDAERGQDAAQWTLRSLTRRGIG 320

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
            +++     G+ + V     G     N  + + +V     +++T  +AL    P      
Sbjct: 321 SAFVLRHRDGRELRVHTGLPGDFNVANAALAVLMVLDSGVELETLQRALDEHDPLTASVP 380

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +     +L+D ++N +       +  L  + P  +GR I V G   +      + 
Sbjct: 381 GRMELVGTRPTSLVDFAHNPDA-----LVRALRSVDPE-DGRVIVVFGATGQ----RDTG 430

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLA-----LKD-----------ALPRSIHVHYSETMDG 432
              +   ++      V ++     A     +++           A  R+  V        
Sbjct: 431 KRPVMGRVAAEEADVVIVTDDDPHAEDPAPIREQVAAGAREAVAAGARATDVLVIAPRAT 490

Query: 433 LFLFIQSSLVDGDVVVVKSSNS 454
                       D V+V     
Sbjct: 491 AIRTAVRMARAEDSVIVAG-RG 511


>gi|167622393|ref|YP_001672687.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           halifaxensis HAW-EB4]
 gi|167352415|gb|ABZ75028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           halifaxensis HAW-EB4]
          Length = 439

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 127/409 (31%), Gaps = 60/409 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           +   T  V     + I V G  DV     +++     +  A +I ITGS GKTT   ++ 
Sbjct: 76  IACETPEVRVAFDMGIEVIG--DVELFAREVS-----QGSAKVIGITGSNGKTTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +      C  +   +IGVP     +    +  I EL    L      TH ++   A
Sbjct: 129 EMAKA----CGCSYAVGGNIGVPALDLLLEPK-ELYILELSSFQL----ETTHSLQCTAA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  +S +E    AK ++++  +               +L  +  AL +   
Sbjct: 180 TCLNISEDHMDRYSDLESYRQAKLKLYKQSKM--------------VLFNREDALTVPNN 225

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +  +S   D         S    +    Q  ++  V     ++ A  +       +   
Sbjct: 226 PTNQESFGLDAPEMDAWGISGGMIVHGSSQIMAVSDVALVGSHNHANIIAAMALATAAGI 285

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                   A +      G   R          T +++S   N  +  AAI  L       
Sbjct: 286 ERDFQIEVAKTFS----GLAHRCEVVAEIAGVTYVNDSKATNIGATVAAIDGL----SEH 337

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G   +  +              L  +S + + G     +    P +I V   
Sbjct: 338 LGELILIAGGDGKGADFKPLE-------PVLEKVSQLIVLGKDADKIAALKPEAIKVT-- 388

Query: 428 ETMDGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLINLL 464
            TM    L        GD+V++              +    F  L+  L
Sbjct: 389 -TMAEAVLKANELATAGDIVILSPACSSLDMYPNFMARGDEFRSLVEAL 436


>gi|296269384|ref|YP_003652016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
 gi|296092171|gb|ADG88123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermobispora
           bispora DSM 43833]
          Length = 462

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 79/431 (18%), Positives = 133/431 (30%), Gaps = 61/431 (14%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA LVV       +  ++A+  +  I V G V        +LA   R    A  +A+TG+
Sbjct: 66  GASLVVTSPGWRPDHPLLAAAAAAGIEVIGEV--------ELAWRLRGDGAAPWLALTGT 117

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTT   MLT  L++             ++GVP+  A         + EL    L    
Sbjct: 118 NGKTTAVRMLTSMLTAAGL----KALAVGNVGVPIVEAVREPYDVLAV-ELSSFQLHWSS 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            +     P  A +  +AP H+     +EE A+AKA+IF           N DD     L 
Sbjct: 173 GIA----PLAAAVLNVAPDHIDWHGSLEEYAAAKAKIFRNAPTV---IYNADDERCARLA 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
               A G + +     +              +++++               +      N+
Sbjct: 226 EPYRAAGRRVVGFTLGAPRPGQLGVVEDLLVDRAFVPDPRHTAEELATLADVRPLAPHNV 285

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
              L   ++  A                    R       G    +D+S   NP +  A+
Sbjct: 286 ANALAAAALARAHGVPTGAVRRGLAEFVPDPHRIAHVARIGDVDYVDDSKATNPHAAAAS 345

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +S    +     G+           G              +   +  V L G     +++
Sbjct: 346 LSAFRSVVWIAGGQLK---------GADVDDLVRQ-----AAGRLRGVVLLGADRARIRE 391

Query: 417 ALPRSI-HVHYSET-------MDGLFLFIQSSLVDGDVVVVK------------SSNSCG 456
           AL R   H+   E        MD +          GD V++             ++    
Sbjct: 392 ALERHAPHIPVVEVPGQDTGVMDRVVTEAAKLAAPGDTVLLAPAAASYDMFAGYAARGDA 451

Query: 457 FYRLINLLLEE 467
           F   +  L + 
Sbjct: 452 FAEAVRRLAKR 462


>gi|170700177|ref|ZP_02891195.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
 gi|170134909|gb|EDT03219.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           IOP40-10]
          Length = 512

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 78/479 (16%), Positives = 149/479 (31%), Gaps = 49/479 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLRAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ + +     +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPA-LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIK------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
            + +  AL+++                  + +       P     +    D G   + M 
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAME 184

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             SH      +       IAV T +   HL      +    A               +N 
Sbjct: 185 VSSHALHQGRVNGTA-FDIAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVVNR 242

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEV 283
           DD+    L  K         Y  G ++  D          +  +  +   +       +V
Sbjct: 243 DDAAGRRLLEKLAGRVRTIAYGIGDAQTPDADRELVALDVRATATGTAFRLSSSWGDADV 302

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G     N+L  LG +       D A+  ++      GR +R    L      ++ 
Sbjct: 303 EVGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVI 362

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y   P +++  +  L  I+    GR + + G     G    +    L   ++      
Sbjct: 363 D-YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLADE 417

Query: 404 VWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           V ++  +  +         +   +    H    E      L         DVVV+  K 
Sbjct: 418 VVVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|87301212|ref|ZP_01084053.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
 gi|87284180|gb|EAQ76133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 5701]
          Length = 463

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 122/401 (30%), Gaps = 54/401 (13%)

Query: 91  VLGAL--------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           VL AL         +++VA    ++   I ITG+ GKTT   +L+  L+        +G+
Sbjct: 90  VLKALRERGVRVCGEMSVAWEASNEIPWIGITGTNGKTTVTHLLSHILNHAGLDAPMVGN 149

Query: 143 YNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                   L   R       D+ + EL    +     L     P + + TT+ P HL   
Sbjct: 150 VGISAAELLIERREAGATPPDWLVVELSSYQIESSAELA----PRLGLWTTLTPDHLERH 205

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +E   + K  + +   +               L+A + +    T  + G  +     L
Sbjct: 206 GTLEAYRAIKRSLLQNCGEQLLNA------DDADLRAHAGSWDRATWVTAGTRRLLGAGL 259

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + +    +   +                G H  QNM++       L  +      AL  F
Sbjct: 260 QPF-LWIDGGMVMAASGPLFSAAALALPGAHNRQNMVLAAATALKLGLEPAVIEAALRSF 318

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R ++ R           ++S   N  + +  I+ +       +G  + + G   +
Sbjct: 319 PGVPHRLEQIRLLDG---VRWFNDSKATNYDAAEVGITAV-------DGPMVVLAGGEIK 368

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFI 437
            G+        L    +      V L G    A    L  S +   V   E         
Sbjct: 369 QGDPEAWL-EALGRQAAA-----VVLFGAAREAFAALLSGSGYAGTVELVEGQAEAVPLA 422

Query: 438 QSSLVD-GD-VVVV---KSS---------NSCGFYRLINLL 464
           +      G   V++    +S             F  L+  L
Sbjct: 423 RELARRLGCPTVLLSPACASFDQYKDFEARGEHFRTLVAAL 463


>gi|255974062|ref|ZP_05424648.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256957086|ref|ZP_05561257.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|257077882|ref|ZP_05572243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294780582|ref|ZP_06745945.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|307268073|ref|ZP_07549461.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|307278956|ref|ZP_07560015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|312901048|ref|ZP_07760339.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|255966934|gb|EET97556.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis T2]
 gi|256947582|gb|EEU64214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis DS5]
 gi|256985912|gb|EEU73214.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis JH1]
 gi|294452409|gb|EFG20848.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis PC1.1]
 gi|306504343|gb|EFM73554.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0860]
 gi|306515714|gb|EFM84241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4248]
 gi|311291874|gb|EFQ70430.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0470]
 gi|315031721|gb|EFT43653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0017]
 gi|315034222|gb|EFT46154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0027]
 gi|315147944|gb|EFT91960.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX4244]
 gi|329574355|gb|EGG55927.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterococcus
           faecalis TX1467]
          Length = 456

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|85058428|ref|YP_454130.1| UDP-N-acetylmuramate--L-alanine ligase [Sodalis glossinidius str.
           'morsitans']
 gi|109892741|sp|Q2NVV0|MURC_SODGM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|84778948|dbj|BAE73725.1| UDP-N-acetylmuramate-alanine ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 490

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 131/398 (32%), Gaps = 47/398 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +   + IPV         +  LA   R R     IAI G+ GKTTT  M+    
Sbjct: 91  DNPEIVAAKEVRIPVIQ----RAEM--LAELMRFRHG---IAIAGTHGKTTTTAMVASIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A+IT
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGCS-RYLIAEADESDASFLH-----LQPMVAIIT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q     S+   + +   + V  +  G H A N +  + + +    
Sbjct: 250 YGFSDDADLRITDYRQDGARGSFTFTRQEKADLRVELNAPGRHNALNAVAAIAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + ++ ++A+  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 NDESILQAMLQFQGTGRRFDDLGHYDLVNVNGKTGEVMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P        V+         ++  + D A VL    +  + +            G    
Sbjct: 370 WPDK----RLVMVFQPHRYTRTRDLYDDFANVL--SGVDVLLMLDVYPAGEAPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +L   +     V       M+ L   +   L D D+V+
Sbjct: 424 SLCRTIRGRGKVDPILVPDMETLPATLAQVLQDNDLVL 461


>gi|218768199|ref|YP_002342711.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|121052207|emb|CAM08530.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis Z2491]
 gi|319410446|emb|CBY90806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase (murein peptide ligase)
           [Neisseria meningitidis WUE 2594]
          Length = 458

 Score = 60.3 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 67/413 (16%), Positives = 118/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKKAGHVAWSLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSTFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL     V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKA------------ALPASLKEADQVFCYAGGADWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|268591757|ref|ZP_06125978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
 gi|291312718|gb|EFE53171.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rettgeri DSM 1131]
          Length = 436

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 118/376 (31%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     +   +         +IG P     +     
Sbjct: 99  FCREADAPIVAITGSNGKSTVTSLVGEMAKAAGISV----GVGGNIGTPALSL-LNAGHR 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A +  I+  H+  +  G+E+   AK +I+   +  
Sbjct: 154 LYVLELSSFQL----ETTSSLEATAATVLNISEDHMDRYPLGLEQYREAKLKIYHNAQNC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+ +   F  ++      +  +                
Sbjct: 210 IVNVQDILTLPANHTLDECISFGLNSGDYFFDTQKRVLVAQGKELLDVNEMHLTGQHNYL 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +    +   +       L ++                     G   R+   L      
Sbjct: 270 NALAALALADAVDIPRPACLQVLKEYA-----------------GLAHRFELVLFNNGVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + ++  N
Sbjct: 313 WINDSKATNVGSTEAALNGL-----HVDGNIYLLLGGDGKSADFSP-----LKQYIAADN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              ++  G    AL D  P       +ETM+     I   L  GD+V++    +S     
Sbjct: 363 Y-RLYCFGRDGKALADMAPE--KSVLTETMEQSLRQIAPQLKAGDMVLLSPACASLDQFK 419

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 420 SFEQRGTVFAQLAQEL 435


>gi|149914528|ref|ZP_01903058.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811321|gb|EDM71156.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 477

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 121/405 (29%), Gaps = 50/405 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++ G          +       +PV     V  A   LA   RL+S    +A+ G+
Sbjct: 87  ISSAIKPG-------NPELDEARKRGLPV-----VRRA-EMLAELMRLKSN---VAVAGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+      + +        N  I             ++ + E   S      
Sbjct: 131 HGKTTTTTMVAAL---LDRGKFDPTVVNGGIIHAYGSNARVGQGEWMVVEADES-----D 182

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   E +     E    +   G      DD   + L 
Sbjct: 183 GTFNRLPATIAIVTNIDPEHMDHWGTEENLHRGFYEFVSNIPFYGLAVCCTDDPDVQALV 242

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           AK     + T     ++      LR  K  +                     G H   N 
Sbjct: 243 AKLTDRRVVTYGFNTQADIRAVNLRYEKGVAHFDVALQAEGTMIEGCTLPMPGDHNVSNA 302

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L        +AL+ F     R       + +     I + Y  +P  + A 
Sbjct: 303 LSAVAVARHLGMKRSEIREALAAFGGVNRRFT----KVGEVNGVTIIDDYGHHPTEIAAV 358

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLSGFH 410
           +          +GR IAV              H   AE         +  I+ V+ +G  
Sbjct: 359 LKAA---RQACDGRVIAV-----HQPHRYSRLHHHFAEFCTCFNEADVVAIAEVFAAGED 410

Query: 411 V------LALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    L   L      H      +D L   ++     GD+V
Sbjct: 411 PIDGATRDDLVAGLIRAGHRHARAFNDLDDLVRLVREQARPGDMV 455


>gi|28209980|ref|NP_780924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           tetani E88]
 gi|28202415|gb|AAO34861.1| UDP-N-acetylmuramoylalanine-d-glutamate ligase [Clostridium tetani
           E88]
          Length = 464

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 121/382 (31%), Gaps = 53/382 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A +  ITGS GKTTT  ++   L +   T    G+  N +    T        D
Sbjct: 117 FIKYCPAKLFCITGSDGKTTTTTLIYNILKTEGYTVWVGGNIGNPL---FTKIEEIKKDD 173

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I+         +A++T ++P HL     +EE   AK  IF+   +  
Sbjct: 174 KVVLELSSFQLMSIKEPI-----EVALVTNVSPNHLDIHKDMEEYIKAKKNIFKYQREND 228

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N D+   + ++ +    G    +S  +                +       +    
Sbjct: 229 LLVINEDNKITKSMEEEC--RGRLLKFSMKEKLKEGSFYYNEDLYINE-------KKVCN 279

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L     VS  ++       A +      G   R            
Sbjct: 280 VSEVKLKGMHNVENLLAAFSCVSEDSSIDSMREVAKNFN----GVEHRLEFVKEIQEVKY 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    AA+    +               +   G   +    ++     + +I
Sbjct: 336 FNDSIASSPTRTLAALQSFDR-------------PVILIAGGYDKKISFEVLAKEGISHI 382

Query: 402 SHVWLSGFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            H+ L G     +++A  + +        +    +++      + +   GDVV +    +
Sbjct: 383 KHLILLGDTKYKIEEAFKKVMRDSSEDLPISICNSIEEAINIAKENGESGDVVTLSPACA 442

Query: 452 S---------NSCGFYRLINLL 464
           S             F  +I  L
Sbjct: 443 SFDMFKNFEERGNKFKSIIRNL 464


>gi|332991938|gb|AEF01993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alteromonas sp.
           SN2]
          Length = 470

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 103/348 (29%), Gaps = 33/348 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPV---DVD 161
               I ITGS GKTT   + T  L +        G+        +P ++A +      +D
Sbjct: 103 NTPTIGITGSNGKTTVTLLTTHMLKACGYEVCEAGNVGRPVLETLPESMAELETLSSSLD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++ + A I  I+  HL     +++  +AK  IF       
Sbjct: 163 VIVLELSSFQL----ETTSSLKLNAASILNISDDHLDRHGDMQQYTAAKQRIFSHCHTAV 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +         K  + A   +   ++G     D     +        +  +    + 
Sbjct: 219 VWRGD---------KQVTPASNCENTITYGL----DMSDTGFGLREGVITINGEALLNTA 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++   G+   +     + L      + +    +   +               +       
Sbjct: 266 DIRLAGMHNVLNVMASLALCQAFSTSLNKPALLNTAARAVASFTSAPHRCVEIANINGVK 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +   A        I+ +  ++P   G+ I + G   +  +LS        +     ++
Sbjct: 326 WIDDSKATNVGA--TIAAIQGLAPTTNGKIILIAGGDSKGADLSA------LKPALDESV 377

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G                    +M+   L       +GD+V++
Sbjct: 378 GEVIALGKDAEKFSAVFRD---TTIVASMEKAVLAANLRAGNGDIVLL 422


>gi|254671874|emb|CBA04108.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha275]
          Length = 458

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 116/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++A+ G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HSRWVLAVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKKAGHVAWSLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSTFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKSALPESLKE------------ADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHGKLLEALR 458


>gi|317501878|ref|ZP_07960063.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088609|ref|ZP_08337520.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896768|gb|EFV18854.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407566|gb|EGG87066.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 461

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 128/388 (32%), Gaps = 42/388 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  M++  L                      
Sbjct: 101 ELLGQLMKNY-----DTPIAVSGTHGKTTTTSMISHILLEGDLDPTISVGGILK------ 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G     ++   E         P I+VI  I   HL  F  +E+I  +  +
Sbjct: 150 --AIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVILNIEEDHLDFFKDLEDIRHSFHQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-- 270
             E L + GT+ +N +   +  +           + ++G +   D+  +           
Sbjct: 208 FAELLPEDGTLIINAEIKDYAEIYE----GLSCNVVTYGTNGCFDYSAKNITYDENGHVA 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +   +    +  +     G H   N L  + +  IL   +D   + L  F   + R +  
Sbjct: 264 FDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYK 323

Query: 331 RCALNQ-------GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                           T I  +  A   S+  +  V     PH   R  A   +  E   
Sbjct: 324 GEFNGVTVIDDYAHHPTEILATLKAAQHSLHNS--VWCVFQPHTYTRTKAFFHEFAE--A 379

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
           LS + H+ LA++ +      +   G     L     +     HY  +   +  F++ +  
Sbjct: 380 LSHADHLVLADIFAARETDTL---GISSADLAKETEKLGTDTHYFPSFAQIEAFLKENCR 436

Query: 443 DGDVVVVKSSNSCGFYRLI---NLLLEE 467
            GD +++      G   ++     LL++
Sbjct: 437 PGD-LLIT----MGAGDVVTIGENLLKQ 459


>gi|254000283|ref|YP_003052346.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
 gi|253986962|gb|ACT51819.1| UDP-N-acetylmuramate [Methylovorus sp. SIP3-4]
          Length = 457

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 126/419 (30%), Gaps = 48/419 (11%)

Query: 69  VVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV+    ++  I +  +P             LA          ++A+ G+ GKTTT  ML
Sbjct: 70  VVSRGNPLMEEILNRGLPYVSGP------QWLAENVLR--DKWVLAVAGTHGKTTTSSML 121

Query: 127 TIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
              L                         G P    +      F + E            
Sbjct: 122 AWILEYAGLAPGFLIGGVPQNFDISARLPGAPRQEPQ--GRSPFFVIEADEYDTAFFDKR 179

Query: 179 --THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 RP  AV+  +   H   F+ +  I +    +   + + G +  N  +   + + 
Sbjct: 180 SKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFHHLVRTVPQQGLVVANGREESLQRVI 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+         ++  ++             +E S+  +Q +     V  + +G H   N 
Sbjct: 240 ARGC-------WTPVETFGDAHGWHAGAADAEGSFDVIQGEQVLGRVQWNLLGEHNRMNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASM 353
           L  L     +   V+  I AL+ F   + R +             F     +       +
Sbjct: 293 LAALAAARHVGVPVEVGIAALAEFQNVKRRMEVRGEVKGITVYDDFAHHPTAITTTLEGL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A +     ++          LG M              A   SL +   V+  G ++  
Sbjct: 353 RAKVGASRILAVLEPRSNTMKLGVMKA------------ALPASLKSADRVYCYGANLGW 400

Query: 414 -LKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +AL     +   E  M  L   I      GD ++V  SN  GF  +   LLE   A
Sbjct: 401 DAAEALHDMGEIAQVETDMTKLVEAIAREARSGDHILV-MSNG-GFGGIHQKLLERLAA 457


>gi|224534651|ref|ZP_03675223.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
 gi|224513899|gb|EEF84221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           spielmanii A14S]
          Length = 451

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 67/452 (14%), Positives = 140/452 (30%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTDMVASIG---------SLSIPVFG----VDDVLGA------------- 94
           ++ GA LV+ +    A +          +  I        V+D   A             
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLRDFNDQIRYVLGKHDVNDFKKADIVVKNPSVKPNN 89

Query: 95  -LNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  II++TG+ GK+T   +L   L          G+    
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIISVTGTKGKSTLVSLLYRVLKKKYPKVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P +++IT +   H + +S  ++ 
Sbjct: 150 ---PLSFFDQLDGRSPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYSNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I  +     +F   ++K+       +  F +    DF       
Sbjct: 203 IVDKSKIFVNQTSGIVIIQDKAYYKYFSKFESKA------KVILFSEFNPCDF------- 249

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++  +   + +    + +           M   L    +          AL + +  +G
Sbjct: 250 -NQDIFYSNKGEVYFNDKLIGSFYESKTVLMTPKLIAFFVSYYLNIDLNHALQILNNFKG 308

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R             +++ +  P S   ++  L        G    ++G     G   
Sbjct: 309 IEHRLEFVKLVKNVLFYNDTASTIPDSTVLSVKSLKT----NVGCINLIVG-----GTDK 359

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
                  +++++L     + + G   + + + L +S I     +++     +       G
Sbjct: 360 NLDFSSFSKIINLVKA-WILIKGSATVKIINILKKSSIQYFVFDSLKDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F +L+N+L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKKLVNML 450


>gi|169833121|ref|YP_001694158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226722947|sp|B1IAM3|MURD_STRPI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|168995623|gb|ACA36235.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 450

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  I     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVIP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +           + GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELAIQGDVVLL 421


>gi|148989060|ref|ZP_01820460.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
 gi|147925557|gb|EDK76634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP6-BS73]
          Length = 434

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 52  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 108

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 109 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 164

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 165 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 220

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 221 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 270

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 271 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 321

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 322 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 374

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 375 KAGVAYVEATDIADATRKAYELATQGDVVLL 405


>gi|15900589|ref|NP_345193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae TIGR4]
 gi|111658685|ref|ZP_01409328.1| hypothetical protein SpneT_02000191 [Streptococcus pneumoniae
           TIGR4]
 gi|30316108|sp|Q97RU8|MURD_STRPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14972164|gb|AAK74833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae TIGR4]
          Length = 450

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|167614190|gb|ABZ89695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Buchnera
           aphidicola]
          Length = 438

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 112/349 (32%), Gaps = 39/349 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   II+ITG+ GK+T   ++                   +IG P     +    D
Sbjct: 100 FSRETTVPIISITGTNGKSTVATIVKNIAKKSGYKVYLG----GNIGFPALDM-LEKKAD 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
             I EL    L         ++  ++V+  I   HL  +  G ++    K  I++  E  
Sbjct: 155 LYILELSSFQL----ENIFSLKSKLSVVLNINEDHLDRYPDGFQQYKKIKLSIYKNSEIC 210

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                          K        K   +FG     +          ++ ++  + +   
Sbjct: 211 LINLRE---------KKYCFKNKHKKYITFGT----NDSDYYVSSIKDKIFLYYKQKKIF 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                    +   +N L++L I   +    D      S F     R    +        +
Sbjct: 258 DMSKTSIHEHQNYENALVSLAISDAMNFPRDKVKYVFSNFKSLPHRF---QIVHKHNDIS 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S + N  S K A+S +     + +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKSTNINSTKIALSNI-----NTKGTIWLLLG-----GDKKSANFQILKNDLEKLK 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G   + +     +     Y E +    + I   ++ GD+V++
Sbjct: 365 V-KIYCFGKDGMNIAKIFQK--KSIYIENLKDAMILISKEVMSGDIVLL 410


>gi|217076584|ref|YP_002334300.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
 gi|226722950|sp|B7IFU5|MURD_THEAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|217036437|gb|ACJ74959.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           africanus TCF52B]
          Length = 423

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 116/370 (31%), Gaps = 69/370 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           +IA+TGSVGK+TT  M+   L+              +IG+P+       +  D+ + E+ 
Sbjct: 107 VIAVTGSVGKSTTVSMIQHVLNK-----YKRTLLAGNIGIPIAKLLNDDLRADYLVLEVS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L          +P+I+ I  I P HL+    +    ++K +I    ++      N +
Sbjct: 162 SFQLFWSDKF----KPNISSILNIYPNHLNWHPEMSHYINSKFKITLSQDENDFFVYNPN 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +      K  A  +   Y F   +  +                               
Sbjct: 218 DEYIVKNLGKVKAKKVPFKYDFEIHQLPEH----------------------------LR 249

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N+     IV +   + +          P      R             ++S   
Sbjct: 250 YKQTIENVAAAKTIVEVAGFEFNIDFLEDFEKLP-----HRMEYVTEINGVKFFNDSKAT 304

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N A++  A+           G+   +   M  +G+        L   +   ++  V L G
Sbjct: 305 NAAAVIRAVENFD-------GKLHLI---MAGIGKNED---YTLLRKVLKNSVKTVALVG 351

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCG 456
                +K  L   I+     +++     +      GDV+++    +S             
Sbjct: 352 PIAKDVKPYL-DGINFMECSSINEAVNQLFRIANPGDVIMLSPGGASFDAFKNFEERGEY 410

Query: 457 FYRLINLLLE 466
           F +L+  L E
Sbjct: 411 FKQLVFQLKE 420


>gi|313202239|ref|YP_004040897.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
 gi|312441555|gb|ADQ85661.1| UDP-N-acetylmuramate [Methylovorus sp. MP688]
          Length = 457

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 125/419 (29%), Gaps = 48/419 (11%)

Query: 69  VVNT--DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV+    ++  I +  +P             LA          ++A+ G+ GKTTT  ML
Sbjct: 70  VVSRGNPLMEEILNRGLPYVSGP------QWLAENVLR--DKWVLAVAGTHGKTTTSSML 121

Query: 127 TIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
              L                         G P    +      F + E            
Sbjct: 122 AWILEYAGLAPGFLIGGVPQNFDISARLPGAPRQEPQ--GRSPFFVIEADEYDTAFFDKR 179

Query: 179 --THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 RP  AV+  +   H   F+ +  I +    +   + + G +  N  +   + + 
Sbjct: 180 SKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFHHLVRTVPQQGLVVANGREESLQRVI 239

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A+         ++  ++             +E S+  +Q +     V    +G H   N 
Sbjct: 240 ARGC-------WTPVETFGDAHGWHAGAADAEGSFDVIQGEQVLGRVQWSLLGEHNRMNA 292

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASM 353
           L  L     +   V+  I AL+ F   + R +             F     +       +
Sbjct: 293 LAALAAARHVGVPVEVGIAALAEFQNVKRRMEVRGEVKGITVYDDFAHHPTAITTTLEGL 352

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +A +     ++          LG M              A   SL +   V+  G ++  
Sbjct: 353 RAKVGASRILAVLEPRSNTMKLGVMKA------------ALPASLKSADRVYCYGANLGW 400

Query: 414 -LKDALPRSIHVHYSE-TMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              +AL     +   E  M  L   I      GD ++V  SN  GF  +   LLE   A
Sbjct: 401 DAAEALHDMGEIALVETDMTKLVEAIAREARSGDHILV-MSNG-GFGGIHQKLLERLAA 457


>gi|312867256|ref|ZP_07727466.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
 gi|311097385|gb|EFQ55619.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           parasanguinis F0405]
          Length = 449

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 130/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV         L  L       S A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMVEKALEKGIPVL----TEVELAYLI------SDAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   +   + D  + EL    L  I        P IAVI
Sbjct: 135 TAAGQ----GGLLSGNIGFPASQVAQTATEKDVLVMELSSFQLMGIEAFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+      E   +AK  + + + +   I LN++    + L  K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFENYVAAKWNLQKNMTEKDVIVLNFNQDLAKELATKTKARVLP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   ++ + +           G H  +N L T+ +  +   +
Sbjct: 243 FSTVEKVDG------AYLEDGLLKFKGEVVMRADELGVPGSHNVENALATIAVAKVRGVE 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +   + LS F   + R    +           ++S + N  +          +S     
Sbjct: 297 NEVIKETLSAFGGVKHRL---QYVDEIQGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
           + I + G     G    +   +L   +    +  + + G     +K    +  +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPHI--TGLKEMVILGESAPRVKRVADKAGVPYVDAA 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DVADATKKAFYLASPGDVVLL 421


>gi|163751822|ref|ZP_02159038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
 gi|161328307|gb|EDP99468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           benthica KT99]
          Length = 449

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 115/380 (30%), Gaps = 53/380 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L   A   S + +I ITGS GK+T   ++     +    Y    +   +IG+P+    +
Sbjct: 98  ELFARAVKNSSSCVIGITGSNGKSTVTTLVGEMAKAAGLNY----AVGGNIGIPVLDL-L 152

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              +D  I EL    L      TH +    A    I+  H+  +  +E    AK  +++ 
Sbjct: 153 QSPIDLYILELSSFQL----ETTHSLNCIAATCLNISEDHMDRYRDLEAYRQAKLSLYDQ 208

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            ++      +      + +   S  L       +G                +   +    
Sbjct: 209 SKRALFNREDSLTQPNDPMDQNSFGLTSPVNDEWGVKDGKIVHGASEIVSLDDVAIVGSH 268

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                             N++  + +      + ++ I+    F     R        N 
Sbjct: 269 NHA---------------NLIAAMALAYHAGIEKESMIEVAKHFTGLAHRC---ELVANI 310

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              + +++S   N  +  AA+  L        G  I + G   +  +             
Sbjct: 311 DAVSYVNDSKATNVGATVAALEGL----SEHLGDIILIAGGDGKGADFGPLE-------A 359

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
            L  ++H+   G     +      S  V   ++M             GD+V++    +S 
Sbjct: 360 VLDKVTHLITLGKDGDKIAALKDNSKRV---DSMADAVKQAAGLATAGDIVLLSPACASL 416

Query: 453 --------NSCGFYRLINLL 464
                       F +L+  L
Sbjct: 417 DMYKNFMARGDDFRQLVQAL 436


>gi|154503754|ref|ZP_02040814.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
 gi|153795854|gb|EDN78274.1| hypothetical protein RUMGNA_01578 [Ruminococcus gnavus ATCC 29149]
          Length = 487

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 129/367 (35%), Gaps = 36/367 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  M++  L +                V   
Sbjct: 130 ELLGQLMANY-----KTPIAVSGTHGKTTTTSMISHVLLAGDTDPTIS--------VGGI 176

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  +  ++  G   + ++   E         P I++I  I   HL  F  +E+I  +  +
Sbjct: 177 LQAIGGNIRVGSSGIFVTEACEYTNSFLHFFPKISIILNIEADHLDFFKDLEDIRHSFHQ 236

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
               L   GT+ +N +   ++ +          ++ ++G S   D+  +      +   +
Sbjct: 237 FAALLPSDGTLIINGEIDQYQEI----CEGLDCSVVTYGMSPEFDYSAQNITYDEKGRVA 292

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +   +       +V    G H   N L  +    +L   +DT  K L  F   + R    
Sbjct: 293 FDFFRNGKLDTHIVLSVTGDHNVSNALSAIATAELLGLSMDTIQKGLLSFSGTDRRF--- 349

Query: 331 RCALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                    T++D+  +           A       +     PH   R  A   +  E  
Sbjct: 350 EYKGTIDDVTIVDDYAHHPTEIKATLKAAKHYPHRKLWCVFQPHTYTRTKAFFQEFAE-- 407

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
            LS + H+ LA++ +      +   G    AL DA+       HY  +   +  F++ + 
Sbjct: 408 ALSHADHVILADIYAARETDTL---GVSSEALSDAIRSLGTDSHYFPSFAEIETFLKENW 464

Query: 442 VDGDVVV 448
             GD+V+
Sbjct: 465 NAGDLVL 471


>gi|114798168|ref|YP_761703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Hyphomonas
           neptunium ATCC 15444]
 gi|114738342|gb|ABI76467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hyphomonas
           neptunium ATCC 15444]
          Length = 471

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/381 (14%), Positives = 111/381 (29%), Gaps = 48/381 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R++  ++A+TG+ GK+TT  ++   L    +          +IG  +            
Sbjct: 112 ERARPKVVAVTGTNGKSTTTALIGHILKQAGRD----ARVGGNIGTGVLDLAALHSNAIY 167

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L  ++ L       ++V   ++P HL    G++   +AK  IF+        
Sbjct: 168 VLELSSYQLDLVKSLHC----DVSVFMNLSPDHLDRHGGMDGYQAAKMRIFQNQTDKNVA 223

Query: 224 FLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +DD + + +     A G +     S   +          +    QS     +     
Sbjct: 224 VIGFDDIYTQSIAIGLSAKGPQKVVQISSTYTLGKGISAVDGRLYDNQSGKAEFVGKLDE 283

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                G   H                         ++      G   R            
Sbjct: 284 CPALIGRHNHQNAAAAYAACRAL-----GLDPATIMAGLRTFPGLAHRMEAVGELDGIRF 338

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-N 400
           I++S   N  + + A+     I     G   A                  +A + SL+ N
Sbjct: 339 INDSKATNAQAAEQALRSFKNIYWIAGGVPKA----------------EGIAPLASLFPN 382

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KSS- 452
           ++  +L G    A    L   +      ++D                G V++     +S 
Sbjct: 383 VTKAYLIGQAEDAFAATLNGKVPSQVCGSLDRAVEAAYRDAKAAGEPGAVILFSPACASF 442

Query: 453 --------NSCGFYRLINLLL 465
                       F  L++ ++
Sbjct: 443 DQFKDYEHRGDAFRTLVHGIV 463


>gi|225023408|ref|ZP_03712600.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
 gi|224943886|gb|EEG25095.1| hypothetical protein EIKCOROL_00266 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 122/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VIEAILNRGLPYVSGPQWLAENVL-------------HGRWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + G+   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGIPQNFGISARLPQAPKADPASRSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  A++  +   H   F  +  I +    +   +   G I  N  +   + + A+  
Sbjct: 186 HYRPRTAILNNLEYDHADIFPNLAAIQTQFHHLVRTIPGQGLIVCNGREESLQTVLAQGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  ++  ++       +  +     ++  +        +    +G H   N L  +
Sbjct: 246 -------WTPVENFGGAEGWQAGEPDGNGAFDVLHHGQTVGRIGWQLLGEHNRLNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                    +  A +ALS F   + R +   C         F     +     A ++  +
Sbjct: 299 AAARHAGVSIQVACEALSQFQNVKRRMEVKGCVRGITVYDDFAHHPTAIATTVAGLRQKV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--FHVLALK 415
                I+          LG M             L E L+      V+  G         
Sbjct: 359 GGARIIAVLEPRSNTMKLGSMK----------AALPESLAEA--DQVFCYGGGVEWDVAA 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +H     D     I S+   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGSKLHTGNDFDAFVQSILSNAKSGDHILV-MSNG-GFGGIHQKLLD 455


>gi|83589695|ref|YP_429704.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
 gi|109892711|sp|Q2RK78|MURC_MOOTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83572609|gb|ABC19161.1| UDP-N-acetylmuramate--L-alanine ligase [Moorella thermoacetica ATCC
           39073]
          Length = 468

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 140/416 (33%), Gaps = 49/416 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V  +   V +    S+PV          L +L  A R       IA+ G+ GKTTT  
Sbjct: 75  SAVPSSNPEVVAARQRSLPVVK----RGELLARLFNARRG------IAVAGAHGKTTTSA 124

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++ + +       A +                P   DF + E   S           ++P
Sbjct: 125 LVALVMKEGGLEPAAVIGGYVRE---FASNAYPGRGDFLVAEADES-----DGSFLWLKP 176

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IA+IT I   HL ++  ++ I +A  +  + +   G   L  +D     L A       
Sbjct: 177 EIALITNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAEDPRVAGLVA----CSP 232

Query: 245 KTIYSFGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + + ++G +   D++    +             +    ++     G H   N L  +   
Sbjct: 233 RQVITYGLNGRPDYRATGVQMAGMGGRAAIYYREQYLGQLTMAVPGRHNILNALGAIAAG 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L        +AL  F     R +     L     T + + Y  +P  ++A ++  SQ+
Sbjct: 293 HQLGIPFAVMARALGQFRGVGRRFE----ILWDDGTTRVVDDYAHHPTEIRATLAAASQV 348

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVLAL 414
                G +  V          +   + +  +     ++   + ++ +G       +   +
Sbjct: 349 -----GAKRVVAVFQPHRYTRTHHLYREFGQAFRQADVVIVNDIYPAGEAPLPGVNSQLI 403

Query: 415 KDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSS----N-SCGFYRLINL 463
              +  S H  V+Y  T++    F++ S   GD+V+   +        G  + +  
Sbjct: 404 TGEIKGSGHQQVYYLPTLEETLAFLKKSCRPGDLVLTLGAGDVWRVGMGLAQYLEA 459


>gi|22536654|ref|NP_687505.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae 2603V/R]
 gi|76787986|ref|YP_329209.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae A909]
 gi|76798291|ref|ZP_00780538.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77405595|ref|ZP_00782685.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
 gi|77411435|ref|ZP_00787781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|30316025|sp|Q8E186|MURD_STRA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063264|sp|Q3K2P4|MURD_STRA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22533493|gb|AAM99377.1|AE014213_16 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 2603V/R]
 gi|76563043|gb|ABA45627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae A909]
 gi|76586363|gb|EAO62874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 18RS21]
 gi|77162521|gb|EAO73486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae CJB111]
 gi|77175817|gb|EAO78596.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae H36B]
          Length = 451

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 138/390 (35%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ D    I +  IP      V  AL K          A L S++ +I ITGS GKTTT
Sbjct: 68  LLDEDFCYMIKNPGIPY-NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G    +IG P   + +   D D  + EL    L  ++     
Sbjct: 127 TTMIAEVLNAGGQR----GLLAGNIGFPASEVVQAANDKDTLVMELSSFQLMGVKEF--- 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++    + L      
Sbjct: 180 -RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAK---T 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +      K     ++  +   +        +           G H  +N L T+ 
Sbjct: 236 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIMSVDDIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +         + LS F   + R    +        +  ++S + N  +         
Sbjct: 289 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    + H+ + G     +K A  ++
Sbjct: 340 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHMVVLGESASRVKRAAQKA 392

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V YS+   +             GDV+++
Sbjct: 393 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|241758801|ref|ZP_04756914.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
 gi|241321009|gb|EER57222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria flavescens SK114]
          Length = 472

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 117/416 (28%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL              +  ++ + G+ GKTTT  ML  
Sbjct: 93  VVEAILNRGLPYISGPQWLAENVL-------------HQHWVLGVAGTHGKTTTASMLAW 139

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 140 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  A++  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 198 FVHYRPRTAILNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +      + S+  +    K+  V    +G H   N L 
Sbjct: 258 GCWTPVEKFGT-------EHGWQVGGVNVDGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 311 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A   SL +   V+    G     
Sbjct: 371 RVGNARILAVLEPRSNTMKLGTMKA------------ALPASLNDADQVFCYAGGVDWDV 418

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 419 AEALAPLGGKLHVGKDFDTFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALK 472


>gi|116491164|ref|YP_810708.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
 gi|122276654|sp|Q04ES9|MURD_OENOB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116091889|gb|ABJ57043.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oenococcus oeni
           PSU-1]
          Length = 438

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 124/407 (30%), Gaps = 60/407 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             +++    +L+IPV    +V  AL         + K  ++A+TGS GKTTT  ++   L
Sbjct: 71  EKEIIKKALNLNIPVI--TEVQVAL--------DQFKGEVLAVTGSNGKTTTTTLIGKML 120

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +             +IG+P++   +        + EL    L         ++P IAVI
Sbjct: 121 KADNVDVKVG----GNIGIPVSELMLSDSQPRVLMLELSSFQLLGA----QNIKPKIAVI 172

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+           AK  I +   K   + LN      +    +          S
Sbjct: 173 TNLFSSHIDFHHTRGNYLRAKFSITQHQTKDDYLVLNDSSIDSKDFAKR----------S 222

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                                 +    +          +G H  +N+L  +    I    
Sbjct: 223 QADDYYFSPTNTSVNTYVNDGTIYFDDEKIIDLSKVVLVGEHNLENILAAVTAAKIFGVS 282

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                K L+ F   E R             T+ ++S   +  + + A++   +       
Sbjct: 283 NRAIEKVLTSFKGLEHRL---EAVGVIKERTVYNDSKATDIEATQKALASFKE------- 332

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYS 427
               + G +    +     +  +       N+  +   G     L+ A  ++        
Sbjct: 333 PINLIAGGL----DRGDDLNRLVPNF---KNVVSLITYGQTKNKLQSAGEKAGIKQTVVV 385

Query: 428 ETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLIN 462
           +T+       +     G V++     +S             F ++I 
Sbjct: 386 DTLKEAVAKAKELSRPGQVLLFSPAAASWDQFPNFEIRGEEFKKMIK 432


>gi|183599903|ref|ZP_02961396.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
 gi|188022178|gb|EDU60218.1| hypothetical protein PROSTU_03424 [Providencia stuartii ATCC 25827]
          Length = 441

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 116/375 (30%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A IIAITGS GK+T   ++     +   +         +IG+P     +     
Sbjct: 104 FCREADAPIIAITGSNGKSTVTSLVGEMAKAAGISV----GVGGNIGIPALSL-LNQGHQ 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +     +A  +           
Sbjct: 159 LYVLELSSFQL----ETTSSLQALAATVLNVTEDHMDRYPL--GLAQYRDAKLRIYHNAA 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N  D               +   SFG      +   + +    +    + +    +
Sbjct: 213 NCIVNAQDP-----LTLPRDRRHEACISFGVDSGDYYFDTQQRLLVAKGQAIIDVADMHL 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              H+      A  +    GI      DV                  R++  L       
Sbjct: 268 TGQHNYTNALAALALADIAGIERKACLDVLKNYAG---------LMHRFQLVLLNNGVRW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L       +G    +LG   +  + S      L   L+  N+
Sbjct: 319 INDSKATNVGSTEAALNGL-----KVDGTLHLLLGGDGKAADFSP-----LKPYLAQDNV 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             V+  G    AL    P       +ETM+    ++   L  GD+V++    +S      
Sbjct: 369 -RVYCFGRDGKALAQLEPE--KSVLTETMEQSMRYLAPHLKSGDMVLLSPACASIDQFKN 425

Query: 453 ---NSCGFYRLINLL 464
                  F +L   L
Sbjct: 426 FEQRGMIFAQLAKEL 440


>gi|325132242|gb|EGC54936.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M6190]
 gi|325138166|gb|EGC60737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           ES14902]
          Length = 458

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 124/414 (29%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                    + TA +AL  F   + R +    A        F     +       ++  I
Sbjct: 299 AAARHAGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A  +SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWNVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
              P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 407 ALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLDALR 458


>gi|226320605|ref|ZP_03796165.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
 gi|226234024|gb|EEH32745.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Borrelia burgdorferi 29805]
          Length = 82

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVD 443
           +   H DL       N   ++L G   L ++D+        +Y    D    F   SL  
Sbjct: 2   AYKTHKDLILEAISMNFDKIFLIGEEFLDVRDSENLVEKCLYYFSEFDKFIDFFLKSLEP 61

Query: 444 GDVVVVKSSNSCGFYRLINLL 464
              +V+K S      R++N +
Sbjct: 62  SVFIVIKGSRFNRLERILNYI 82


>gi|168183628|ref|ZP_02618292.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|237797009|ref|YP_002864561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Ba4
           str. 657]
 gi|259509765|sp|C3KWA4|MURC_CLOB6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182673211|gb|EDT85172.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum Bf]
 gi|229261312|gb|ACQ52345.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum Ba4
           str. 657]
          Length = 458

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 126/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGDLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I  I  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++    I 
Sbjct: 181 IGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKNNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDKADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H    +     ++  +  DGD+++
Sbjct: 417 CTNFHKFNDIK---NYLIENAKDGDLIL 441


>gi|325266701|ref|ZP_08133377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
 gi|324981810|gb|EGC17446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Kingella denitrificans
           ATCC 33394]
          Length = 460

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 117/409 (28%), Gaps = 42/409 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +  ++   S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRNLPYTSGPQWLAENVLQ-------------PYWVLGVAGTHGKTTTASML-A 124

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHI 186
            +       A            ++         F + E                  RP  
Sbjct: 125 WVLEYAGLGAGFLIGGVPQNFSVSARLPQDGSPFFVIEADEYDTAFFDKRSKFVHYRPRT 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+  +   H   F  +  I +    +   +   G +  N        +  K        
Sbjct: 185 AVLNNLEYDHADIFPDLAAIQTQFHHLVRTVPGEGLVVANGQAEPLREVIDKGC------ 238

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++  +        +         +       K   V    +G H   N L  +      
Sbjct: 239 -WTPVEWFGNLEGWQIGAADENGGFDVFFQGEKLGRVAWDLLGEHNRLNALAVIAAARHA 297

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              V  A  AL  F   + R +             + + +  +P ++    + ++ +   
Sbjct: 298 GVPVAQACAALGEFKNVKRRME----IKGVAGGITVYDDFAHHPTAI---ETTIAGLRQK 350

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLS--GFHVLALKDALPRS 421
             G RI  +     +   S +  +   +     SL     V+    G          P  
Sbjct: 351 VGGARIVAV-----LEPRSNTMKLGTMKAALPGSLQAADAVFCYAGGVDWDVQAALAPLG 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             +H     DG    + +    GD V++  SN  GF  + + LL +  A
Sbjct: 406 GKLHVGRDFDGFVDDLAAFAQSGDHVLI-MSNG-GFGGIHDKLLAKLAA 452


>gi|281412291|ref|YP_003346370.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
 gi|281373394|gb|ADA66956.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermotoga
           naphthophila RKU-10]
          Length = 430

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 98/366 (26%), Gaps = 57/366 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS              + G P  +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSE----RGFKSFLGGNFGTP-AVEALEGEYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L               ++  I+  HL   S  EE   +K +      +      N
Sbjct: 156 MSSFQLFWSERPYLSNF----LVLNISEDHLDWHSSFEEYVDSKLKPAFLQTEGDLFVYN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   L                     +    +            + +       + 
Sbjct: 212 KHIERLRNL---------------------EGVRSRKIPFWTGENFATERELIVHGKKYT 250

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +  Q     L +  +     +     L +    +    R             ++S 
Sbjct: 251 LPGNYPYQTRENILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDSK 310

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  ++  A+S   +           V+  MC +G   +  +  L    +   + H+ +
Sbjct: 311 ATSTHAVLGALSNFDK-----------VVLIMCGIG---KKENYSLFVEKASPKLKHLIM 356

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
            G     L       I     E M+  F         GDV+++    +S           
Sbjct: 357 FGEISKELAP-FVGKIPHSIVENMEEAFEKAMEVSEKGDVILLSPGGASFDMYENYAKRG 415

Query: 455 CGFYRL 460
             F  L
Sbjct: 416 EHFREL 421


>gi|227499510|ref|ZP_03929617.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
 gi|227218389|gb|EEI83640.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus tetradius ATCC
           35098]
          Length = 461

 Score = 60.3 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/389 (13%), Positives = 117/389 (30%), Gaps = 30/389 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++ + + + +   LS+PV       G  L  L    +       IA++GS GK+TT  M
Sbjct: 79  AILDDNEELIAAKKLSVPVV----TRGVFLGALMRNYKNS-----IAVSGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    K    +               M  +V  G  E  ++   E +       P 
Sbjct: 130 ISKILMHSDKDATILLGGELE--------EMKGNVRVGSEEYLVTEACEYKGNIRYYYPQ 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I   HL  +  +E+I +   E     ++      N ++     L   S    + 
Sbjct: 182 TLIVLNIDEDHLDYYKDLEDIVNTFKEYLSNQDENSMTITNLNEDN-NRLIFDSVKGRLI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T     +  + +    ++       +      G         IG H   N + ++     
Sbjct: 241 TYAQDNEEADYNAFNIQFDNDGHPEFDLKFANGSIEHFKLGVIGRHNINNAMASIIATYE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVL 360
               + T  + +  +   + R +      +    T             +  +      ++
Sbjct: 301 NGISIKTIKENIVKYTGLDRRMQVIGHVSDATIMTDYGHHPSEIKVTVDALAEHTKGRLI 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
               PH   R   +  +     +      +      +            H   + DAL  
Sbjct: 361 CVWQPHTYSRTKTLFNEFLNCFDSCDEVIVTDI-YAAREKFDPTI----HSKDVVDALVK 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + I+  Y    +    +I+  +   D+V+
Sbjct: 416 KGINAKYISQFEECKDYIEKIIKKDDLVL 444


>gi|167586014|ref|ZP_02378402.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ubonensis Bu]
          Length = 512

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 72/477 (15%), Positives = 153/477 (32%), Gaps = 45/477 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLEAGDVFLAYA---VDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   D +A+  +  + +     +      +A             + +TG+ GKT+ 
Sbjct: 66  AAAVLYQPDGLAAAPAAPVALAVPA-LNELAGDIASGWYGDPSDSLFAVGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIFELG 168
            + +  AL+++ +                + +       P     +    D       + 
Sbjct: 125 TQWIAAALTALDRPCALIGTLGSGMPGHLVPTGFTTPDAPQLQRSLAQLRDAGAKAVAME 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +S     +   +     IAV T +   HL      +   +AKA++F        +    D
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHRTFDAYEAAKAKLFAWRGLRAAVVNRDD 244

Query: 229 DSFFELLKA---KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            +   LL +   +   +      +     + +      +  +  +   ++      +V  
Sbjct: 245 AAGSRLLASLSGQVRTIAYGIGDAPAAGADRELSAHDVRATATGTAFRLRSSWGDTDVEV 304

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG +       D A+  ++   P  GR +R    L      ++ + 
Sbjct: 305 GTLGTFNVSNLLAVLGTLLAADVPFDAALAEVARLEPVNGRMQRLGGRLQNDEPLVVID- 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +  L  I+    G  + + G     G    +    L   ++      V 
Sbjct: 364 YAHTPDALEKTLDALRPIAVARGGALVCMFG----CGGDRDATKRPLMGAIAERLADEVV 419

Query: 406 LSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +  +         +   +    +    E      L         DVVV+  K 
Sbjct: 420 VTSDNPRSEDPQRIIDQIVAGMTAPDNARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|227517916|ref|ZP_03947965.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
 gi|227074670|gb|EEI12633.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterococcus
           faecalis TX0104]
          Length = 456

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWSIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALQG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|167039242|ref|YP_001662227.1| UDP-N-acetylmuramate--L-alanine ligase [Thermoanaerobacter sp.
           X514]
 gi|300913882|ref|ZP_07131199.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725433|ref|YP_003905184.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
 gi|166853482|gb|ABY91891.1| UDP-N-acetylmuramate--alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890567|gb|EFK85712.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582494|gb|ADN55893.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter sp. X513]
          Length = 464

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 132/403 (32%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP     D    L  +    +       IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  +++     +                 +       + ++ + E       E   
Sbjct: 119 GKTTTTSLIS---VILDGMGFDPTVLVGGEVDVIGGNVKVGNSEYFVTEAC-----EYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYQDSDWKAKSISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----VKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  ++L D  E  + +      +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFAESFDNADKI--IIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKAGDLVL 440


>gi|17547501|ref|NP_520903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17429804|emb|CAD16489.1| probable udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
           diaminopimelate ligase transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 461

 Score = 60.3 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 106/364 (29%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGLSARLTASDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 160 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+      +    FG   +A + +       + S+  +        V  
Sbjct: 220 NGREDSLKRVLARGCWSEAE---FFGAEDSAGWAIAN--LGDDDSFDVMLDGQVQGRVRW 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 275 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGITVYDDFAHH 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 335 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGGRD 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 395 AI-----GWDLAGALAPLGERAQAFSDLVALVEAVTAAARPGDHVLV-MSNG-GFGGVHQ 447

Query: 463 LLLE 466
            LL+
Sbjct: 448 KLLD 451


>gi|319744582|gb|EFV96935.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptococcus
           agalactiae ATCC 13813]
          Length = 455

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 138/390 (35%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ D    I +  IP      V  AL K          A L S++ +I ITGS GKTTT
Sbjct: 72  LLDEDFCYMIKNPGIPY-NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 130

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G    +IG P   + +   D D  + EL    L  ++     
Sbjct: 131 TTMIAEVLNAGGQR----GLLAGNIGFPASEVVQAADDKDILVMELSSFQLMGVKEF--- 183

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++    + L      
Sbjct: 184 -RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAK---T 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +      K     ++  +   +        +           G H  +N L T+ 
Sbjct: 240 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIMSVDDIGVPGSHNVENALATIA 292

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +         + LS F   + R    +        +  ++S + N  +         
Sbjct: 293 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 343

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    + H+ + G     +K A  ++
Sbjct: 344 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHMVVLGESASRVKRAAQKA 396

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V YS+   +             GDV+++
Sbjct: 397 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 425


>gi|315173293|gb|EFU17310.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1346]
          Length = 456

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 95/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E++              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAESVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|221231502|ref|YP_002510654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
 gi|254766058|sp|B8ZMZ6|MURD_STRPJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|220673962|emb|CAR68471.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae ATCC 700669]
          Length = 450

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 135/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+       E  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRDVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|77408374|ref|ZP_00785114.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77172977|gb|EAO76106.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 451

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 138/390 (35%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ D    I +  IP      V  AL K          A L S++ +I ITGS GKTTT
Sbjct: 68  LLDEDFCYMIKNPGIPY-NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G    +IG P   + +   D D  + EL    L  ++     
Sbjct: 127 TTMIAEVLNAGGQR----GLLAGNIGFPASEVVQAADDKDILVMELSSFQLMGVKEF--- 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++    + L      
Sbjct: 180 -RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAK---T 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +      K     ++  +   +        +           G H  +N L T+ 
Sbjct: 236 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIMSVDDIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +         + LS F   + R    +        +  ++S + N  +         
Sbjct: 289 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    + H+ + G     +K A  ++
Sbjct: 340 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHMVVLGESASRVKRAAQKA 392

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V YS+   +             GDV+++
Sbjct: 393 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|307289405|ref|ZP_07569359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|306499660|gb|EFM69023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0109]
 gi|315165142|gb|EFU09159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX1302]
          Length = 456

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L             +         +         +  +    +   
Sbjct: 220 DTLILNWNQVELQTLAK----------TTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|291549817|emb|CBL26079.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus torques L2-14]
          Length = 458

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 112/363 (30%), Gaps = 30/363 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  M++  L +                    
Sbjct: 101 ELLGQLMKNY-----KTPIAVSGTHGKTTTTSMISHILLAADLDPTISVGGILK------ 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  E  ++   E         P I+VI  I   HL  F  +E+I  +  +
Sbjct: 150 --AIGGNIRVGKSETFITEACEYTNSFLHFYPKISVILNIEEDHLDFFKDLEDIRHSFHQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               L   GT+ +N D   ++ +    +      + ++G S   D+         +    
Sbjct: 208 FAALLPSDGTLIINGDIDNYQEI----YDSLDCNVITYGSSDMLDYSASNITYDEKGLVA 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              ++   +                    I +     +        +        +    
Sbjct: 264 FDLIKNGKVVDHIQLSVTGDHNVSNALASIATAELLQIPMETIKKGILSFSGTDRRFEYK 323

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
               G   + D +++    +             V     PH   R  A   +  E   LS
Sbjct: 324 GTFNGVTVVDDYAHHPTEIAATLKAAQHYPHNQVWCVFQPHTYTRTKAFFHEFAE--ALS 381

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
            + H+ LA++ +      +   G     L +   +     HY  + + +  F++ +   G
Sbjct: 382 HTDHLVLADIYAARETDTL---GVSSADLAEEARKLGTDAHYLPSFEEIEAFLKENCKSG 438

Query: 445 DVV 447
           D++
Sbjct: 439 DLL 441


>gi|225856379|ref|YP_002737890.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae P1031]
 gi|225858514|ref|YP_002740024.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae 70585]
 gi|254766057|sp|C1C648|MURD_STRP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766061|sp|C1CJF2|MURD_STRZP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|225722058|gb|ACO17912.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 70585]
 gi|225725603|gb|ACO21455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae P1031]
 gi|301793866|emb|CBW36259.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae INV104]
 gi|332204703|gb|EGJ18768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA47901]
          Length = 450

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 141/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   ++  D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|226323684|ref|ZP_03799202.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
 gi|225207868|gb|EEG90222.1| hypothetical protein COPCOM_01459 [Coprococcus comes ATCC 27758]
          Length = 453

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 89/334 (26%), Gaps = 38/334 (11%)

Query: 146 HIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A     +    + EL    L       H   P ++ +  I P HL+    +E
Sbjct: 143 NIGTPYTNAAADTREDSVIVAELSSFQL----ESIHTFHPKVSAVLNITPDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
               AK  I +         LNY+D     +  +  A  +         +          
Sbjct: 199 AYIRAKMNIAKNQTPEDICVLNYEDEETRKMADEFQASVLFFSSKHKLEQGIYLDGEDIV 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E+      +       +     Y      +       +    +  ++ A        
Sbjct: 259 YKPEKEKEGTVICKTGELQILGVHNYENVMAAVAMAAAYGVDLDVIRKSVLAFK------ 312

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
           G   R      +      ++S   NP +    I  +++ +    G             + 
Sbjct: 313 GVEHRIEYVAEKNGVVYYNDSKGTNPDAAIKGIQAMNRPTILIGGGY-----------DK 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
              FH  +        + ++ L G     ++              +T +           
Sbjct: 362 QSDFHEWIQSF--DGKVRYLVLIGATKEQIQKEAAECGFHDCILKDTFEEALDTCVELAR 419

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            GD V++    +S             F + +N L
Sbjct: 420 PGDAVLLSPACASWGMFPNYEVRGEEFKKYVNAL 453


>gi|302386831|ref|YP_003822653.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
 gi|302197459|gb|ADL05030.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           saccharolyticum WM1]
          Length = 448

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 99/334 (29%), Gaps = 31/334 (9%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHI 186
                I K +        +IGVP T   +    D   + E+    L          RP +
Sbjct: 122 ALTGEIMKAHYDQVFVVGNIGVPYTEEALKTGGDSVTVAEISSFQL----ETITDFRPDV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL     +E     K  I        +  LN+DD       A      +  
Sbjct: 178 SAILNITPDHLDRHKTMECYIEVKERITSNQRPQDSCILNFDDPVLREFGAALTPKAVYF 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  +    +  +          E+             +G H  +N++    I + +
Sbjct: 238 SSRQFLEEGYCMEGDRIIWNHNGEKTEIAN-----IHEIQLLGRHNHENIMAAAAISAQM 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +D   K +  F   E R         +      ++S   NP +   AI  +      
Sbjct: 293 GVPMDVIRKVVREFKAVEHRI---EFVAEKAGVKYFNDSKGTNPDAAIQAIKAM------ 343

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
             G  + + G     G    S + +  E      + ++ L G     + +   R    +V
Sbjct: 344 -PGPTLLIAG-----GYDKNSQYDEWIESFD-GKVKYMVLLGQTREKIAECAARHGFTNV 396

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
            Y+E M        S    GD V++    +S   
Sbjct: 397 MYAEDMQEAVKVCASYANRGDHVLLSPACASWGM 430


>gi|124515890|gb|EAY57399.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leptospirillum
           rubarum]
          Length = 487

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 52/392 (13%), Positives = 125/392 (31%), Gaps = 26/392 (6%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V+  +     +       + +V+G + + A +    +   ++A+ G+ GK+TT  +L
Sbjct: 78  FVIVSPGVPPRKWAGQEAPLYIRNVMGEM-EWASSW---TAVPLVAVGGTNGKSTTSALL 133

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L +  +     G++   +   +   R        +  + +S          + RP +
Sbjct: 134 AHFLEAAGERVFLGGNFGTPLSDMVLSERRGSSPLPTVAVVELSSF--QAETMGIFRPVV 191

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGL---------EKTGTIFLNYDDSFFELLKA 237
            ++  I P HL  +  ++   +AK   F+ +                          L  
Sbjct: 192 NLLLNITPDHLDRYLSVDHYRNAKWNAFQTMEKESFTVLNRDPACGVYPPFSPISSRLAW 251

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
              + G     + G     D              +   L+   +E + +      A    
Sbjct: 252 FYGSKGPCPDRTGGLILERDALSATLDGIEGLPPISWNLEKFPLEGMGNRQNLAAALLGA 311

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +     +    +  T +   +      G   R            I++S   N  + + A+
Sbjct: 312 VLYLKATGKHPEQVTTVLEEAAASF-RGLPHRMEVVGEWKGIRFINDSKATNVDATRLAL 370

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
              +  SP        +LG     G    + +  L E +   ++  + + G     +++ 
Sbjct: 371 EGYAGHSP----FVHLILG-----GRDKGAPYAPLREGI-RTSVKSIAVLGEARDKIREE 420

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L   + +   E+++           +GD V++
Sbjct: 421 LGSLVPLRMCESLEEAVDVAAGQASEGDRVLL 452


>gi|52080122|ref|YP_078913.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|52785496|ref|YP_091325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           licheniformis ATCC 14580]
 gi|319646103|ref|ZP_08000333.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
 gi|62900504|sp|Q65JY2|MURD_BACLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|52003333|gb|AAU23275.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           licheniformis ATCC 14580]
 gi|52347998|gb|AAU40632.1| MurD [Bacillus licheniformis ATCC 14580]
 gi|317391853|gb|EFV72650.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           BT1B_CT2]
          Length = 451

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 106/349 (30%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              + A  I ITGS GKTTT  ++   L +            N       +A      ++
Sbjct: 108 YHLTDAPFIGITGSNGKTTTTTLVYEMLKA---DSKKALVAGNIGTAASEVANQASGDEW 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L      T+  RP I ++  +  AHL      +    AK +++    +T  
Sbjct: 165 IVTELSSFQLM----GTYQFRPKIGLLLNVFDAHLDYHHSRKNYELAKQQVYRNQSETDV 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L   S A  +              +  +   C +   +    +     
Sbjct: 221 AVVNLDDETVVRLAECSKAEKVYFSVR---------RTLERGACVKDGAIMFNGEPVMPL 271

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  L IV           K L+ F   + R    +           
Sbjct: 272 EDVVLPGEHNLENILAALCIVKTAGVSDAAVRKVLTSFTGVKHRM---QYVATIKNRLFY 328

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + K A+S   +         + +L    + G         +        + 
Sbjct: 329 NDSKATNILATKKALSAFQK--------PVILLAGGLDRGNEFDELKPHM------SFVK 374

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V   G      +          V   + ++       S   +GDV+++
Sbjct: 375 AVITFGETAPKFEKLAEEMGIQQVKRVDNVEQAATAAFSLSDEGDVILL 423


>gi|188532900|ref|YP_001906697.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Erwinia
           tasmaniensis Et1/99]
 gi|188027942|emb|CAO95799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia
           tasmaniensis Et1/99]
          Length = 438

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 123/349 (35%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALTL-LQQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A +  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTSSLKAAAATLLNVTEDHMDRYPLGMQQYRAAKLRIYENATAC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G             DF      +    +W+ VQ +   
Sbjct: 210 VVNADDAMTMPIRGADARCVSFGA------------DFGDYHLTRQQGSTWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                H +G H   N L  L +   +     T++KAL+ F+    R    +         
Sbjct: 258 NTDEMHLVGQHNYTNALAALALADAVGLPRATSLKALTTFNGLPHRF---QLVHEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H  G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HPAGTLWLLLG-----GDGKSADFTPLTRYLQGER 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           I  V+  G     L  AL   I V  + TM      I + +  GD+V++
Sbjct: 365 I-RVYCFGRDGAELA-ALRPEIAVQTA-TMAEAVRQIAAQVRPGDLVLL 410


>gi|262401830|ref|ZP_06078395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
 gi|262351802|gb|EEZ00933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC586]
          Length = 451

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 115/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMVA--WVLDHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V  +G+ +  V    
Sbjct: 223 DEALADVFKRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLFKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++ +         A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAVRHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL +   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLRSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAKAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|94987544|ref|YP_595477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
 gi|122063249|sp|Q1MPC1|MURD_LAWIP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|94731793|emb|CAJ55156.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 440

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 121/391 (30%), Gaps = 68/391 (17%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           + +  L++  +A    S   +IAITG+ GKTT   +    L     +         +IG 
Sbjct: 103 NTIQVLSETELAWYQLSNEKVIAITGTNGKTTIASLCAAMLVEQGISVFVG----GNIGT 158

Query: 150 PLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           PL+   +    V   + EL    L        L RP IA+ + I+  HL     ++E  S
Sbjct: 159 PLSEYVLCKKKVSVVVLELSSFQL----QTCSLFRPDIAICSNISINHLDYHRNMDEYIS 214

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK  I +   ++    L                                      +   +
Sbjct: 215 AKLNICKNQCESDLAILK----------------------------------PGMEALVD 240

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              ++ ++                  N+               T   A  V    E    
Sbjct: 241 SYNLKARVVFYRDLGNFSTSRLLGVHNLENAEAAWLACKELGVTEEIAKKVVTTFEPLEH 300

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R            +++S      +++AA+    Q         + + G   + G+L+   
Sbjct: 301 RLEQVRLLNGVLYVNDSKGTTVEALRAALESFKQ-------PILLLAGGRFKGGDLTS-- 351

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  +    +  V L G      +DA    I + +  T++     + +   +G+V++
Sbjct: 352 ----LRPIIKKQVRIVGLFGNSREYFEDAWGDIIPITWDNTLEQAVKRLSNLAHNGEVIL 407

Query: 449 V---KSS---------NSCGFYRLINLLLEE 467
           +    SS             F R+++ +L E
Sbjct: 408 LAPATSSFDQYMNYIERGNDFKRIVHEVLNE 438


>gi|320527324|ref|ZP_08028509.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
 gi|320132348|gb|EFW24893.1| UDP-N-acetylmuramate--alanine ligase [Solobacterium moorei F0204]
          Length = 459

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 124/359 (34%), Gaps = 26/359 (7%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L    +       IA++G+ GKTTT  ML+  L +         + +    +   
Sbjct: 104 ELLGELMENYKHS-----IAVSGTHGKTTTTSMLSYILMAANTD----PTISLGGMLAHI 154

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              + V           +   E       ++P + +I  +   HL  F  +++I  +   
Sbjct: 155 GGNIRVGRGQTFL----TEACEYTNSFLELKPLVGIILNVEADHLDFFKDLDDIRLSFRR 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
              G+++ GT+ +N+     E +          T+ +FG+  +   +   +       + 
Sbjct: 211 FASGIKEGGTLVINHSIQDKEYIIGDFKG----TVITFGEDGDMHARNIAYDALGNPGFE 266

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                 K  +V     G H   N L  +     +  D     + L  +   + R +    
Sbjct: 267 VYYKDEKLGDVQLLVPGKHNVDNALAAIATAYSIGIDFAAIKQGLVSYSGVDRRFQY--- 323

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHG---EGRRIAVLGDMCEMGELSQSF- 388
              +     + + Y  +P  ++A ++              +       +  + E +++  
Sbjct: 324 -KGKCNGATVIDDYAHHPQEIEATLNAAKHYPHKKLYVVFQPHTYSRTIALLPEFAKALE 382

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDV 446
           + D+  +  +Y    V  +G     +   + +S     Y  T + +  +++S L +GD+
Sbjct: 383 NADVVILAKIYAAREVNTTGVSAEDISKLMNQSKVTSFYLPTFEEIVDYLRSHLEEGDL 441


>gi|188585042|ref|YP_001916587.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349729|gb|ACB83999.1| UDP-N-acetylmuramate--alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 465

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 70/348 (20%), Positives = 128/348 (36%), Gaps = 29/348 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGM 169
           IAITG+ GKTTT  ML++ L        CI        +P   +   V D ++ + E   
Sbjct: 108 IAITGAHGKTTTTSMLSLILEEASADPTCIIGGE----LPNFGSNARVGDSEYVVAEACE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +R+      P IAVIT I   HL ++    +++  +  +  E ++ +G +F+  +
Sbjct: 164 SDHSFLRYS-----PQIAVITNIEADHLEHYNGSFDQLLKSYRQFIENIDDSGKVFIYSE 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHG 287
             + + L             +FG S++ADF+    K     +   ++     S +V    
Sbjct: 219 CEYHDYLLEGMSK----NCKTFGFSQDADFRATDLKLNKGTTEFTIESDLADSFKVELMV 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L    +   L        +AL  F   + R                     
Sbjct: 275 PGEHNILNALAAASVALDLKISPTAIKRALQKFTGAKRRFMEIGQLQGATIVDDYAHHPT 334

Query: 348 ANPASMKAAIS-----VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
              A++K A       V++   PH   R    + D     E + +    +   +      
Sbjct: 335 EIKATLKTAQEQSDNKVIAIFQPHRFTRTQYFMDDFASSFEEADTV---ILHKVFAAGED 391

Query: 403 HVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447
            +   G +   LKD +  ++    V+ ++ M+ +   + + +  GD V
Sbjct: 392 EI--PGANSKNLKDKIKENVPGLEVYVTDDMEDIAEIVSNIVDKGDYV 437


>gi|163816707|ref|ZP_02208070.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
 gi|158447964|gb|EDP24959.1| hypothetical protein COPEUT_02897 [Coprococcus eutactus ATCC 27759]
          Length = 457

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 64/411 (15%), Positives = 121/411 (29%), Gaps = 50/411 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +  IP++       +  +LA       K  I AITG+ GKTTT  ++   
Sbjct: 83  VDAPFTDIVRNAGIPIW-------SEIELAYHY---GKGKIAAITGTNGKTTTTALVGEI 132

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           + +   +   +G+                D    + E+    L           P+++ I
Sbjct: 133 VKAYNASTIVVGNIGIPYTELCDTTNEDSDT---VAEISSFQL----ETVIDFHPNVSAI 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             + P HL+     E   + K  I +         LNYDD     +  K+ +      +S
Sbjct: 186 LNLTPDHLNRHYTFENYGNVKFSITKNQTMDDVTVLNYDDEHTRAMGEKAKSHVRVVYFS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +       +       + + +      K   +    +    A N+   L  V I    
Sbjct: 246 RLEKPAGGVYVE------DGNIVLEDGDKKINVLALSDLKLLGAHNVENVLAAVGISYYM 299

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                   +V    +    R             ++S   NP +    I  +   +    G
Sbjct: 300 GVPVDVIRNVATSFKAVEHRIEYVDTINGVAYYNDSKGTNPDAAIKGIQAMVSPTYLIGG 359

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYS 427
                       G    S + +  E      +  + L G     + D   R     + + 
Sbjct: 360 ------------GYDKGSEYDEWIE-AFGGKVKCLVLIGQTAQKIADCAKRHGFNSIVFE 406

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
           E +     +   + VDGD V++    +S             F   +    E
Sbjct: 407 ENLQEAVAYCHENAVDGDAVLLSPACASWGQFKNYEERGTKFKDYVRSYKE 457


>gi|253699155|ref|YP_003020344.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
 gi|259509788|sp|C6DZK4|MURD_GEOSM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|251774005|gb|ACT16586.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp. M21]
          Length = 452

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 65/354 (18%), Positives = 113/354 (31%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLAR 155
           +LA       KA ++AITG+ GKTTT  +      +             +IG P + LA 
Sbjct: 100 ELASWF---IKAPMVAITGTNGKTTTTTLTGEIFKA----CGFETFVGGNIGNPLIELAE 152

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +V   + EL    L  +       RP +AV+  I   HL  +   +E   AK  IFE
Sbjct: 153 SGQEVARVVVELSSFQLEGVE----SFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFE 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    LN DD       +K  A            +   ++        +   +   
Sbjct: 209 NQTADDFAVLNIDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFG 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +G  ++ V          N+   +  ++           A       +G   R      
Sbjct: 269 TEGFKLKGV---------HNLDNIMASLASTLLMRCDGDCAYEAVKSFKGLPHRMELVEE 319

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  S+  ++           G            G+     +  LA +
Sbjct: 320 IDGVAYYEDSKGTNVGSVVKSLESFDSGITLIAG------------GKDKGGSYEPLAPL 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +SH+ L G     ++ AL      H ++T++      +     G VV+ 
Sbjct: 368 V-ESRVSHLVLIGEAKARMQQALGSLTDTHEAQTLEEAVEIARRLTKPGGVVLF 420


>gi|148657882|ref|YP_001278087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
 gi|166224765|sp|A5UZT4|MURD_ROSS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148569992|gb|ABQ92137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseiflexus sp.
           RS-1]
          Length = 466

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 80/296 (27%), Gaps = 30/296 (10%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA ITTIAP HL     +E    AK +I+        + LN D      +        
Sbjct: 181 PKIACITTIAPDHLDRHGTMEAYILAKEQIWRHQRPGDAVALNADSPIIRAMAVVEQRPD 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++           R      ++        G+ +      +      N+       
Sbjct: 241 DVVWFASAAHPALAHAGRAAFWQGDELVWRDHRGGRHVICTRDDVQLRGTHNLGNIAAAT 300

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +   +                G   R            ++++    P +  AA+      
Sbjct: 301 AAACSFGVAPDHIRRAVQTFPGVEHRLELVRELDGVRYVNDTAATAPEAAIAALRTFDDP 360

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVLALKDAL---- 418
                G            G   Q    DLA  ++   +  V L  G     L+ AL    
Sbjct: 361 IVLIAG------------GADKQLPFDDLAREIAGR-VKAVVLVDGTATPKLQRALRLVD 407

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLIN 462
           P        +  +   +  +     GD+V++    +S             F R++ 
Sbjct: 408 PSVDVCGPFDDFERAVIAARHIAAPGDIVLLSPGCASFGMFRNEFHRGEAFRRIVE 463


>gi|325261331|ref|ZP_08128069.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
 gi|324032785|gb|EGB94062.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. D5]
          Length = 458

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 143/418 (34%), Gaps = 52/418 (12%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +   +    +  IP+          L +L    +       IA++G+ GKTTT 
Sbjct: 76  TAAISRDNPELIEAVARKIPML----TRAELLGQLMKNYKNP-----IAVSGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L                  V   L  +  ++  G  E  ++   E         
Sbjct: 127 SMISHILLEGNLDPTIS--------VGGILQAIGGNIRVGNSETFITEACEYTNSFLDFY 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I+VI  I   HL  F  +E+I  +  +    L   GT+ +N +   +E +     +  
Sbjct: 179 PRISVILNIEEDHLDFFKDLEDIRHSFHQFASLLPPDGTLVINSNIQNYEEI----CSGL 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              I ++G S  +D+  +      +   S+  ++    +  VV    G H   N L ++ 
Sbjct: 235 NCGIITYGSSPKSDYSAQNISYDDKGCVSFDLLRKGIPAEHVVLSVTGDHNVSNALASIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-- 359
           +  +L    D   K L  F   + R +           T I + Y  +P  + A +    
Sbjct: 295 VAELLDIPSDMIQKGLISFSGTDRRFEY----KGTLNGTTIVDDYAHHPTEIAATLKAAQ 350

Query: 360 -------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A   +  E   LS + H+ LA++ +      +   G    
Sbjct: 351 HYPHQGLWCVFQPHTYTRTKAFFHEFAE--ALSHADHVVLADIYAARETDTL---GISSS 405

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI---NLLLE 466
            L   L       HY    + +  F++ +   GD +++      G   ++     LL+
Sbjct: 406 DLAQELLNLGTDSHYFPCFEEIENFLKKNCKPGD-LLIT----MGAGDVVNIGEALLK 458


>gi|326775888|ref|ZP_08235153.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656221|gb|EGE41067.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces cf. griseus
           XylebKG-1]
          Length = 466

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 83/418 (19%), Positives = 145/418 (34%), Gaps = 44/418 (10%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAV 100
           G     GH      +   A  VVV++ + A        G L++PV    D   AL  L  
Sbjct: 54  GATVHIGH--AAGHLADDASCVVVSSAIRADNPELLRAGELAVPVVHRSD---ALASLMN 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R       IA+ G+ GKTTT  ML +ALSS+    +     +              + 
Sbjct: 109 GLRA------IAVAGTHGKTTTTSMLAVALSSLGLAPSYAIGGDLEG---PGTNATHGEG 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E   S             P +A++  +   H +N++ ++EI  +       +   
Sbjct: 160 DIFVAEADES-----DRSFQKYDPEVAIVLNVELDHHANYASMDEIYDSFETFVGKVVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +   L    + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVVSADQPGAVELTRRVRDLSDLKVVTYGCAEDADVRVHKVTPRGLTSEVTVLLNGKF 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L         AL  +   + R +       +    
Sbjct: 275 LTFTVSVPGAHYAHNAVAALAAGVALGIPAHNLASALGSYTGVKRRLQ----LKGEAAGV 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +SY  +P  M A +     +       RI V+     +   +Q    ++ + L+L +
Sbjct: 331 QVIDSYAHHPTEMTADLEA---MRGAAADARILVVFQPH-LFSRTQELGTEMGQALALAD 386

Query: 401 ISHVWLS---------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            S V            G     + DA       V        +   +      GD+V+
Sbjct: 387 ASVVLDIYPAREDPIPGITSALIIDAAKEAGAEVTAVHDQADVPAAVAGMAKSGDLVL 444


>gi|84516388|ref|ZP_01003747.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
 gi|84509424|gb|EAQ05882.1| UDP-N-acetylmuramate--alanine ligase [Loktanella vestfoldensis
           SKA53]
          Length = 471

 Score = 59.9 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 129/407 (31%), Gaps = 53/407 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV+++ +      L       +PV    D       LA   RL+S    +A+ G+
Sbjct: 75  AGAEVVVISSAIKPGNPELDAARATGLPVVRRAD------MLAELMRLKSN---VAVAGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  I             ++ + E   S      
Sbjct: 126 HGKTTTTTMVAALLDE---GGIDPTVINGGIIHAYGSNARMGQGEWMVVEADES-----D 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++  IE +     +    +   G      D    + L 
Sbjct: 178 GTFNRLPATIAIVTNIDPEHMEHWGTIENLRKGFYDFVSNIPFYGLAVCCTDHPEVQALV 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME---VVHHGIGYHMA 293
            +        + +FG +  AD +       +  +  ++ LQ +            G H  
Sbjct: 238 GRITDR---RVVTFGFNAQADVRAINLTYKAGVAHFDIALQSEDQVIAGCSLPMPGDHNV 294

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L    D    AL+ F     R  +            I + Y  +P  +
Sbjct: 295 SNALAAVAVARHLGLKKDEIRAALAGFGGVNRRFTKVAEVNG----VTIIDDYGHHPVEI 350

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSG 408
            A +           GR IAV     +    S+  H             +  IS V+ +G
Sbjct: 351 AAVLRAA---RQATTGRVIAV----HQPHRFSRLSHHFDEFCACFNDADVVGISEVYAAG 403

Query: 409 FHV------LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                      L   L R  H       + D L   ++     GD+V
Sbjct: 404 EDPIAGASHADLVAGLIRHGHRHARIVNSEDDLERLVREQAKPGDMV 450


>gi|212715570|ref|ZP_03323698.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660937|gb|EEB21512.1| hypothetical protein BIFCAT_00469 [Bifidobacterium catenulatum DSM
           16992]
          Length = 517

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 119/437 (27%), Gaps = 49/437 (11%)

Query: 7   FHDLLQA----IQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFI 57
             +++Q     +   +I          I+ D+R +         KG  +     DG D  
Sbjct: 18  LREIIQGDAWTLDAQTINGF-DKPFGSITYDTRQVVSGAL-LCCKG-RFKAEYLDGID-- 72

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATII---- 111
                +G    V   D  A+      P   V+D   A++ L+ A     +++  +I    
Sbjct: 73  ----DRGLAAYVAENDFSAATK---APGLIVNDARKAMSLLSAAFYGYPQNQLKVIGITG 125

Query: 112 ------------AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                       A+             +        TY               + R   D
Sbjct: 126 TKGKTTTAYLTQAMLNGCSDGKCALFSSADNCLDGHTYVESDLTTPESMDAFRMMREAAD 185

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGL 217
                  + +S           +   +A    I+P H+S       E+    K +I +  
Sbjct: 186 NGMKYLVMEVSSQAYKVDRVFGLTFDVAAFLNISPDHISPIEHPTFEDYFHCKRQIVKNC 245

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                              A +      T ++ G++  AD           +  + V+ +
Sbjct: 246 RSLVLGTACAHADLIRQDAAIADIP--VTTFALGEASAADVTAWPESADHSRFAIAVEGE 303

Query: 278 GKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +   G   +      + +            A +AL    P    G+       +
Sbjct: 304 QIGSLSLQLDGDFNYANAAAAIAIAHAVGFDFHETAAKEALRNMEPVRIAGRMEHFHDTK 363

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I + Y  N AS+ A +  + Q     +     V G     G  +     ++    
Sbjct: 364 SNTIAIVD-YAHNYASVTALLDYVDQRYGKDDPEVTLVTGSA---GNKAYDRRSEIVR-A 418

Query: 397 SLYNISHVWLSGFHVLA 413
           +   ++H+ L+      
Sbjct: 419 AQNRVNHLILTFEDTDD 435


>gi|108758004|ref|YP_630156.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
 gi|108461884|gb|ABF87069.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Myxococcus xanthus DK 1622]
          Length = 474

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 115/389 (29%), Gaps = 31/389 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L      RS + ++A  G+ GKTTT  ++   L +  K           +        
Sbjct: 95  AALGSLFLDRSHSVVVA--GTHGKTTTSSLMAHVLVAAGKD---PSFLVGGVTQNYAGNY 149

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + E                  RP  A++T++   H   F  +    +   + 
Sbjct: 150 RVGKGPHFVVEGDEYDTAYWDKGSKFLHYRPRTAILTSVEFDHADIFRDLPHYEATFEKF 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + + G + +         L  +    G    Y   +  +AD+  R      E +  +
Sbjct: 210 VRLIPQDGQLVVCAAYPNAVKLA-REGCPGRVVTYVAKEGADADYTPRNLSFGPEGARFD 268

Query: 274 VQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V         V     G H  +N L  +     L    D   + L+ F   + R    + 
Sbjct: 269 VVARGEVQGTVQLPMGGAHNVENALAVIAAAQGLGLTFDEIAQGLATFSGVKRR----QE 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSF 388
              +    L+ + +  +P +++  I+ +    P  E R  A+                  
Sbjct: 325 IRGEPDGVLVIDDFAHHPTAVRETIAAIHHRYP--ERRLWAIFEPRSNTSRRNIHQEDYA 382

Query: 389 HIDLAEVLSLYNI----SHVWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           H       +   +      V   G  +     + D   + I    S  +  L        
Sbjct: 383 HAFPGAARASLKVPERHDKV-PVGEELDVRKLITDLQAQGIPAEGSTDVQALVDLAAREA 441

Query: 442 VDGDVVVVKSSNSC--GF-YRLINLLLEE 467
             GDV++V  SN    GF  +++  L   
Sbjct: 442 RPGDVLLV-MSNGAFGGFIDKVLAALAAR 469


>gi|56476242|ref|YP_157831.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamin
           opimelate ligase [Aromatoleum aromaticum EbN1]
 gi|56312285|emb|CAI06930.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-
           diaminopimelate ligase [Aromatoleum aromaticum EbN1]
          Length = 451

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 114/419 (27%), Gaps = 50/419 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +AV +G         ++ +I    +P             LA          ++A+ G+
Sbjct: 67  IGNAVSRG-------NPLLEAILDRGLPYVSGP------QWLAENVLQ--GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L                 G     AR+  D  F + E          
Sbjct: 112 HGKTTTTSMLAWMLEDAGLEP--GFLVGGVPGNFGVSARLT-DSPFFVIEADEYDTAFCD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP  A++  +   H   FS +  I +    +   +  +G I  N D+   + 
Sbjct: 169 KRSKFVHYRPRTAILNNLEFDHADIFSDLAAIETQFHHLVRTIPASGRIIANADEESLKR 228

Query: 235 LKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           + A+     ++       +S     +    + + +     S         +       I 
Sbjct: 229 VAARGCWSELEWFGDGAQWSAAAGADEREAVFRLRDEIVGSVAMPMSGSHNRSNALAAIA 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
                 +     I S+                 +     + R       F     +    
Sbjct: 289 AARHVGVTPAQAIASLA---------GFRGIKRRMEVRGQVRGITVYDDFAHHPTAIALT 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
              ++        ++          LG M +    S            L     V+    
Sbjct: 340 VDGLRRREPAGRILAVLEPRSNTMKLGVMKDRLPES------------LAQADRVYCYAN 387

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G          P        + +D L   + ++   GD V+V  SN  GF  + + LL 
Sbjct: 388 GLGWDVAGALAPLGERGATYDDLDRLVADVAAAARPGDHVLV-MSNG-GFGGVHDRLLA 444


>gi|302753318|ref|XP_002960083.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
 gi|300171022|gb|EFJ37622.1| hypothetical protein SELMODRAFT_229823 [Selaginella moellendorffii]
          Length = 492

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 121/395 (30%), Gaps = 30/395 (7%)

Query: 65  AGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  +VV+        ++A      IP       +  L   A A        I A+TG+ G
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIP------TISELGFAAEAFPK--AVKIAAVTGTNG 137

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+T        L          G+                  D       +        L
Sbjct: 138 KSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFKFPSDDPPYQAAVLEVSSYQLEL 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P + VI  ++P HL     +E     K  +FE ++ +    + + D F   +  K
Sbjct: 198 PGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSIIPHADEFLRKVAYK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            ++   K           D Q R+            + + +        +G H AQN   
Sbjct: 258 YNSGSTKAWLGALPGVQLDSQARRAVVV----VPTTKAEARLYLSGLKAVGSHNAQNAAT 313

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L   VD      ++        +      ++     I++S   N  +      
Sbjct: 314 ASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWINDSKATNVDA------ 367

Query: 359 VLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             + I    + + + +LG + + + E        L+++L  +    +   G     ++  
Sbjct: 368 AYTGIKGLADRKAVILLGGLAKVLDEDGSLGFKKLSDLLQNH--RAIVTFGAFGEQIEKE 425

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L  +   I    S TM+      +     GD++++
Sbjct: 426 LKEANVSIPCFRSLTMEDAVARAEKLSKQGDIILL 460


>gi|284008378|emb|CBA74784.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Arsenophonus
           nasoniae]
          Length = 436

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 118/412 (28%), Gaps = 55/412 (13%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L+VV+  +  +   L       D  +  +  + +  R   K  I+AITGS GK+T   
Sbjct: 66  ADLIVVSPGISLATPELK---IAADKGIEIIGDIELFCRETHK-PIVAITGSNGKSTVTA 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++     +     A       +IG P     +  D D  + EL    L      T  ++ 
Sbjct: 122 LVGEMAKAANWRVAIG----GNIGTPALTL-LAKDYDLYVLELSSFQL----ETTSSLKA 172

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A I  +   H+  +    +             K   I      ++    +        
Sbjct: 173 AVATILNVTEDHMDRYPSGIQQYRVAKLRIYAGAKICIINQQDPQTWPLRGRDARCISFG 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                +  +        K +     + + +  Q   +  V                    
Sbjct: 233 INSGDYQLNTRCQELQIKGQPIINTAEIRLVGQHNYLNGVAALALADAVNIPRKASLAAL 292

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
              A                G   R +          +++S   N  S +AA+  L    
Sbjct: 293 TQYA----------------GLPHRCQLVHQHLGIQWVNDSKATNVGSTEAALKGLQV-- 334

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G    +LG   +  + S      L   +S  NI  +   G     L      S+  
Sbjct: 335 ---AGTLYLLLGGEGKSADFSP-----LKPYISAKNI-KLCCFGRDGYQLAQLKANSL-- 383

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
              +TM+     I   L  GD+V++    +S             F +L   L
Sbjct: 384 -LLDTMEQCLRVIVPELKAGDMVLLSPACASFDQFRNFEQRGERFSQLAKEL 434


>gi|163781898|ref|ZP_02176898.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883118|gb|EDP76622.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 415

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 111/379 (29%), Gaps = 55/379 (14%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       +  ++AITG+ GK+TT  + ++ LS   K          +IG PL+   M
Sbjct: 76  ELAYRF---FEGDVVAITGTDGKSTTTRLTSLMLSKKIKDVH----EAGNIGTPLSEVVM 128

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+            +  RP +         HL     + +   +K  IF  
Sbjct: 129 SDPKSTAVVEVSSFQ----GRTLNTFRPSVGAFLNFHEDHLDWHPDLGDYLRSKHNIFSR 184

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E   T                                 AD  +   +    +  +  + 
Sbjct: 185 QEPRDTFIAGSLQDEV-----------------LSTPTQADRVVVDREVVVAEGRVLFRG 227

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +           G H  +N ++   I  +     +   + L  F     R          
Sbjct: 228 ELLFELGDLRLKGAHNLKNAVVASIIARLKGVSTEDIREVLREFRGLPFRM---ELVKVW 284

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               + ++S +  P ++KAA+          +G  I + G     G+   +    L E  
Sbjct: 285 RGVEIYNDSKSTTPNALKAALESF------PDGSVILIAG-----GKDKGADFKPLRETA 333

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
               +   +L G    ++K A     ++    +++            GD V+     SS 
Sbjct: 334 -ERKLKLAFLIGETRESMKTAFGGGSNIKTMSSLEEAVDSALRVAEPGDFVLFSPGCSSF 392

Query: 453 --------NSCGFYRLINL 463
                       F  LI  
Sbjct: 393 DMFSSYVERGEAFNTLIEE 411


>gi|307824829|ref|ZP_07655052.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
 gi|307734187|gb|EFO05041.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacter
           tundripaludum SV96]
          Length = 479

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 121/379 (31%), Gaps = 51/379 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A I+AI+GS GK+T   ML     +             ++G P     + ++    + E
Sbjct: 132 DAPIVAISGSNGKSTVTTMLGEMAKA----TGMKVGVGGNLGTPALDL-LALNAQLYVLE 186

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A +  ++  HL     + E A  K  +F G        +N
Sbjct: 187 LSSFQL----ERTSALNAVAATVLNVSADHLDRHVDMAEYAREKQRVFRGDGVM---VIN 239

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     ++        + +++F  +K ADF L       +  ++              
Sbjct: 240 ADDPVVYAMRD-----DGRKVFTFSINKKADFYLG---YKDDTEYLMHDEACLMPLAELP 291

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  L +   +  D      AL +F     R    +        T +++S 
Sbjct: 292 LEGRHNAANALAALALGVAVGLDEQIMCDALRIFKGLSHRM---QRVAEIRGVTWVNDSK 348

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+   ++      G       DM E+                      V L
Sbjct: 349 ATNIGACVAALQGYARKVILIAGGDAKG-ADMNELTP------------AIKEKAKSVVL 395

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +K AL   + V+ ++ M             G+ V++    +S           
Sbjct: 396 MGKDAGLIKQALNGCVPVYSADNMAQAVEIAAGLADVGESVLLSPACASLDQYKNYQDRG 455

Query: 455 CGFYRLINLLLEE---FPA 470
             F + +  L++    FP 
Sbjct: 456 EKFTKAVLALVDRSGGFPP 474


>gi|254509131|ref|ZP_05121231.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
 gi|219547928|gb|EED24953.1| UDP-N-acetylmuramate--alanine ligase [Vibrio parahaemolyticus 16]
          Length = 486

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/413 (15%), Positives = 135/413 (32%), Gaps = 44/413 (10%)

Query: 62  QKGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNK------------LAVAARLRSK 107
           QKGA + +     ++  +   +       ++      +            LA   R R  
Sbjct: 65  QKGATVYIGHAEKNVAQASVVVVSTAINEENPEVIAARAARIPIVRRAEMLAELMRFRHG 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++T   S        +                  +   G   +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGSSRI 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       ++P ++++T I   H+  +    E +     +    L   G   + 
Sbjct: 174 LIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L  +     I   +S       D   ++ +   +  +  ++     +E+  +
Sbjct: 234 IDDPVVRELVPRISRQVITYGFSEDADVRIDNYRQEGQ---QGKFTVIREGKADLEITLN 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    + + +      +  + A++       R              ++ + Y
Sbjct: 291 IPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFETGNGNAMLVDDY 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  ++  I      + +G   +  V+         ++  + D A VL   ++     
Sbjct: 351 GHHPTEVEVTIQA----ARNGWEDKRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLIMLD 406

Query: 404 VWLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G   +A  D  AL R+I         +      L   + + L DGD+V+
Sbjct: 407 VYSAGEKPIAGADGRALCRTIRGRGKLDPIFVPDSQSLPSVLANVLQDGDLVL 459


>gi|238898847|ref|YP_002924529.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466607|gb|ACQ68381.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 445

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 116/374 (31%), Gaps = 44/374 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      ++A+TGS GK+T   ++T    +         S   +IG+P     +      
Sbjct: 102 REIPPVPVVAVTGSNGKSTVTTLVTQMAQTAGW----PVSMGGNIGIPALKL-LKQKSRL 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L        A +  I   H   +       +        + +   
Sbjct: 157 IVLELSSFQLETTHTLAA----KAATVLNITEDHADRYPLG---LNQYQAAKLRIYQNAH 209

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +   D    L +  +     K   SFG ++      +       Q+  +  L  K M+
Sbjct: 210 TAVINADDPLTLPRNGTQKSATKFEVSFGLNQGQYRLHQDGHDFWLQASDQNVLNTKDMK 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           ++      +    + +   +        + ++KAL  +     R         +     I
Sbjct: 270 LIGKHNYLNALAALALADAV----DIPREASLKALIEYKGLPHRF---EKIFEKNGICWI 322

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S  AAI  +       +G    +LG   +  + S      L   L+   I 
Sbjct: 323 NDSKATNVGSTLAAIKSVQC-----QGTLHLLLGGQGKSADFSI-----LQPDLNQNRI- 371

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
            ++  G     L    P       +ET++     ++S L  GD V++    +S       
Sbjct: 372 QIYCFGQGAETLAALRPEVSQ--RTETLEQAMKLLKSRLKKGDTVLLSPACASFDQFSDF 429

Query: 453 --NSCGFYRLINLL 464
                 F  L   L
Sbjct: 430 EQRGQEFSHLAKEL 443


>gi|25010591|ref|NP_734986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           agalactiae NEM316]
 gi|77413561|ref|ZP_00789749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
 gi|30316027|sp|Q8E6P1|MURD_STRA3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23094944|emb|CAD46166.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160390|gb|EAO71513.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae 515]
          Length = 451

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 139/390 (35%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ D    I +  IP      V  AL K          A L S++ +I ITGS GKTTT
Sbjct: 68  LLDEDFCYMIKNPGIPY-NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             M+   L++  +     G    +IG P   + +   D D  + EL    L  ++     
Sbjct: 127 TTMIAEVLNAGGQR----GLLAGNIGFPASEVVQAADDKDILVMELSSFQLMGVKEF--- 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAVIT + P HL      E+  +AK  I   +  +  + LN++    + L      
Sbjct: 180 -RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVLNFNQGISKELAK---T 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +      K     ++  +   +        +   +       G H  +N L T+ 
Sbjct: 236 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIMLVDDIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +         + LS F   + R    +        +  ++S + N  +         
Sbjct: 289 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    + H+ + G     +K A  ++
Sbjct: 340 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHMVVLGESASRVKRAAQKA 392

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V YS+   +             GDV+++
Sbjct: 393 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|315149516|gb|EFT93532.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterococcus
           faecalis TX0012]
          Length = 456

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 94/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNAQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|187777470|ref|ZP_02993943.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
 gi|187774398|gb|EDU38200.1| hypothetical protein CLOSPO_01038 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 130/388 (33%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       +AI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGDLMKGYKYN-----VAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGKSDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLIAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       S+  V+ + K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GSFDVVKNKQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                +  I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKNEDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKMF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L++   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIINSDMLGDKLRERGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +   GD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKTGDLIL 441


>gi|168492843|ref|ZP_02716986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576912|gb|EDT97440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC3059-06]
          Length = 450

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 135/381 (35%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L       S+A II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLI------SEAPIIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+       E  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|59712807|ref|YP_205583.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio fischeri ES114]
 gi|75353396|sp|Q5E2Q1|MURC_VIBF1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|59480908|gb|AAW86695.1| UDP-N-acetylmuramate:L-alanine ligase [Vibrio fischeri ES114]
          Length = 487

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 65/393 (16%), Positives = 135/393 (34%), Gaps = 42/393 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  + T   
Sbjct: 94  SNPEIVAAKENRIPVI-----RRA-EMLAELMRYRHG---IAVAGTHGKTTTTALTTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S        +                  +   G     ++   E       ++P ++++T
Sbjct: 145 SEAGLDPTFVNGGLVK--------NAGTNARLGSSRFLIAEADESDASFLHLQPMVSIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   +  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAVMCVDDPVVRELLPQV----SRQVIT 252

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD +L  ++Q  +QS+  VQ + ++  ++V +  G H A N    + + +    
Sbjct: 253 YGFSDDADVRLINYRQVGQQSFFTVQRKDRTDLDIVLNIPGKHNALNATAAIAVATEEDV 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
           + +  + AL  F     R  +           ++ + Y  +P  +   I           
Sbjct: 313 EDEAILTALLNFEGAGRRFDQLGEFETGNGSAMLVDDYGHHPTEVDVTIKAARAGWAEK- 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDA 417
                V+         ++  + D A VL   N+  +            ++G    AL   
Sbjct: 372 ---RLVMIFQPHRYSRTRDLYDDFANVLD--NVDVLIMLDVYSAGETPIAGADGRALCRT 426

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +     +   +  T++ L   + + + +GD+++
Sbjct: 427 IRGRGKIDPVFVPTIEALPPVLANIIQEGDLIL 459


>gi|115350512|ref|YP_772351.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
 gi|115280500|gb|ABI86017.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria AMMD]
          Length = 512

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 78/478 (16%), Positives = 151/478 (31%), Gaps = 47/478 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLRAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ + +     +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPA-LDQLAGEIASGWYGDPSDSMLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIK------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
            + +  AL+++                  + +       P     +    D G   + M 
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAME 184

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S     +   +     IAV T +   HL      +    A               +N D
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVVNRD 243

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSMEVV 284
           D+    L  K         Y  G ++  D          +  +  +   ++      +V 
Sbjct: 244 DAAGRRLLEKLAGRVRTIAYGIGDAQAPDADRELVALDVRATATGTAFHLRSSWGDADVE 303

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G     N+L  LG +       D A+  ++      GR +R    L      ++ +
Sbjct: 304 VGTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVID 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y   P +++  +  L  I+    GR + + G     G    +    L  V++      V
Sbjct: 364 -YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGVIAERLADEV 418

Query: 405 WLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            ++  +  +         +   +    H    E      L         DVVV+  K 
Sbjct: 419 VVTSDNPRSEDPQRIIDQVIAGMTAPDHARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|170288512|ref|YP_001738750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
 gi|226722953|sp|B1L9R9|MURD_THESQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|170176015|gb|ACB09067.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga sp.
           RQ2]
          Length = 430

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 98/366 (26%), Gaps = 57/366 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS              + G P  +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLS----RRGFKTFLGGNFGTP-AVEALEGEYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L               ++  I+  HL   S  EE   +K +      +      N
Sbjct: 156 MSSFQLFWSERPYLSNF----LVLNISEDHLDWHSSFEEYVDSKLKPAFLQTEGDLFVYN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   L                     +    +            + +       + 
Sbjct: 212 KHIERLRNL---------------------EGVRSRKIPFWTGENFATERELIVHGKKYT 250

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +  Q     L +  +     +     L +    +    R             ++S 
Sbjct: 251 LPGNYPYQTRENILAVSILYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDSK 310

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  ++  A+S   +           V+  MC +G   +  +  L    +   + H+ +
Sbjct: 311 ATSTHAVLGALSNFDK-----------VVLIMCGIG---KKENYSLFVEKASPKLKHLIM 356

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
            G     L       I     E M+  F         GDV+++    +S           
Sbjct: 357 FGEISKELAP-FVGKIPHSIVENMEEAFEKAMEVSEKGDVILLSPGGASFDMYENYAKRG 415

Query: 455 CGFYRL 460
             F  L
Sbjct: 416 EHFREL 421


>gi|153815035|ref|ZP_01967703.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
 gi|145847603|gb|EDK24521.1| hypothetical protein RUMTOR_01252 [Ruminococcus torques ATCC 27756]
          Length = 458

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 120/365 (32%), Gaps = 34/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  M++  L                      
Sbjct: 101 ELLGQLMKNY-----DTPIAVSGTHGKTTTTSMISHILLEGDLDPTISVGGILK------ 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G     ++   E         P I+VI  I   HL  F  +E+I  +  +
Sbjct: 150 --AIGGNIRVGNSGTFITEACEYTNSFLHFFPKISVILNIEEDHLDFFKDLEDIRHSFHQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-- 270
             E L + GT+ +N +   +  +           + ++G +   D+  +           
Sbjct: 208 FAELLPEDGTLIINAEIKDYAEIYE----GLSCNVVTYGTNGCFDYSAKNITYDENGHVA 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +   +    +  +     G H   N L  + +  IL   +D   + L  F   + R +  
Sbjct: 264 FDLFRRGEYADHIQLSVTGDHNVSNALSAIAVADILGLSIDITKRGLLSFTGTDRRFEYK 323

Query: 331 RCALNQ-------GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                           T I  +  A   S+  +  V     PH   R  A   +  E   
Sbjct: 324 GEFNGVTVIDDYAHHPTEILATLKAAQHSLHNS--VWCVFQPHTYTRTKAFFHEFAE--A 379

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
           LS + H+ LA++ +      +   G     L     +     HY  +   +  F++ +  
Sbjct: 380 LSHADHLVLADIFAARETDTL---GISSADLAKETEKLGTDTHYFPSFAQIEAFLKENCR 436

Query: 443 DGDVV 447
            GD++
Sbjct: 437 PGDLL 441


>gi|121634884|ref|YP_975129.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|120866590|emb|CAM10341.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis FAM18]
 gi|325142376|gb|EGC64785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           961-5945]
 gi|325198327|gb|ADY93783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           G2136]
          Length = 458

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 124/414 (29%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                    + TA +AL  F   + R +    A        F     +       ++  I
Sbjct: 299 AAARHAGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A  +SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWNVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
              P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 407 ALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLDALR 458


>gi|238786721|ref|ZP_04630522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
 gi|238725089|gb|EEQ16728.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           frederiksenii ATCC 33641]
          Length = 438

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 128/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALTL-LKQENQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LVVLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +         
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRF---QLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGEH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P    +   ETM+   + +  +L  GD+V++    +S     
Sbjct: 365 I-KIYCFGRDGEQLAELRPEVSQLT--ETMEQAMVLLAKNLAPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|123966762|ref|YP_001011843.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9515]
 gi|158512733|sp|A2BY75|MURD_PROM5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|123201128|gb|ABM72736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 477

 Score = 59.9 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 114/363 (31%), Gaps = 39/363 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++ +A         I ITG+ GKTT   +L+  L +             +IG PL   
Sbjct: 107 LGEVNIAWESLKNINWIGITGTNGKTTVTHLLSHILRTNNLLAPF----AGNIGTPLCKI 162

Query: 155 RMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +     D+ + EL       I   T  ++P I + TT    HL     ++     K 
Sbjct: 163 AYSIKSKNIDWLVAELSSYQ---IEIATLCIKPKIGIWTTFTADHLDRHKTLDNYFKIKN 219

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + +  E     + +        L+    +L      +    ++       W    +   
Sbjct: 220 SLLKQSEFRIYNYDDIH------LRENFKSLSKGIWITTSSKQSDLDHCDYWINNEDFIV 273

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
              +             G H  QN+L+ +     +    +    AL  +        R  
Sbjct: 274 ERQENLLSLKNFKLK--GNHNTQNLLLAIAAARKIGLSPEKIKNALLSYE---QLPHRME 328

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    +I++S   N  S  A I  +       +G  I + G   + G      +I+
Sbjct: 329 TIYQSNKLEIINDSKATNFDSSTAGIKAI-------KGAPIIISGGKLKSGS-----YIE 376

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDG--DV 446
              +++      V+L G     LK  +        +     +  +  ++ S + +   + 
Sbjct: 377 WVNIINK-KAKAVFLFGESSQTLKKLILEGGFKKDIFIFNDLSEVINYVYSYIENNQIET 435

Query: 447 VVV 449
           ++ 
Sbjct: 436 LLF 438


>gi|225075298|ref|ZP_03718497.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
 gi|224953473|gb|EEG34682.1| hypothetical protein NEIFLAOT_00301 [Neisseria flavescens
           NRL30031/H210]
          Length = 472

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/416 (15%), Positives = 117/416 (28%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 93  VVEAILNKGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 139

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P   +       F + E              
Sbjct: 140 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDSN--SKSPFFVIEADEYDTAFFDKRSK 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 198 FVHYRPRTAVLNNLEFNHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 258 GCWTPVEKFGT-------EHGWQVGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 311 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S              +   V+    G     
Sbjct: 371 RVGNARILAVLEPRSNTMKLGTMKAALPESLK------------DADQVFCYAGGVDWDV 418

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 419 AEALAPLGGKLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALK 472


>gi|216264830|ref|ZP_03436822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221218094|ref|ZP_03589560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223888943|ref|ZP_03623534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224533660|ref|ZP_03674249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225549611|ref|ZP_03770577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
 gi|215981303|gb|EEC22110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 156a]
 gi|221192042|gb|EEE18263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 72a]
 gi|223885759|gb|EEF56858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 64b]
 gi|224513333|gb|EEF83695.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi CA-11.2a]
 gi|225369888|gb|EEG99335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 118a]
          Length = 451

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKSIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|78221634|ref|YP_383381.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
 gi|109892706|sp|Q39YL8|MURC_GEOMG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78192889|gb|ABB30656.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter metallireducens
           GS-15]
          Length = 461

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 114/388 (29%), Gaps = 36/388 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V       IPV         +  LA   R++     IAI G+ GKTTT  M+  AL
Sbjct: 77  DNPEVMEAKRRMIPVI----PRAEM--LAELMRMKYG---IAIAGTHGKTTTTSMVATAL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +     +    L          F + E   S           + P IAV+T
Sbjct: 128 THGGIDPTIVIGGKLNT---LGTNAKLGQGQFLVAEADES-----DGSFLKLSPTIAVVT 179

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   HL  +  GIE+I     +    +   G   L  +D     +  +          +
Sbjct: 180 NIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK----RFVT 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S  AD +    +     +      +G  M EV     G H   N L  + +   L  
Sbjct: 236 YGLSSQADIRATHIRLEGGTTSFVAHYKGYRMGEVSFAMPGAHNVLNALACIAVAMELDV 295

Query: 309 DVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 +  + F     R +            + G       +  A   S      ++  
Sbjct: 296 PFAQIQEGFAKFGGVGRRFQVKGEVNGITVVDDYGHHPAEIRATLAAGKSGWPDRRLVVA 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             PH   R   +  +       +    +          I      G     L + + +  
Sbjct: 356 FQPHRFSRTKELFAEFVTCFYDADVLVLTDIYSAGEAPIE-----GVTAERLAENIRKHG 410

Query: 423 H--VHYSETMDGLFLFIQSSLVDGDVVV 448
              V Y    + L   +   +  GD+V+
Sbjct: 411 QRDVTYIADREALPDHLLQIVRPGDIVL 438


>gi|328885916|emb|CCA59155.1| UDP-N-acetylmuramate--alanine ligase [Streptomyces venezuelae ATCC
           10712]
          Length = 463

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/412 (17%), Positives = 136/412 (33%), Gaps = 44/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH      +   A  VVV++ + A    L       IPV    D L +L           
Sbjct: 60  GH--AAEHLADDASAVVVSSAIRADNPELARAAELGIPVVHRSDALASLMD--------- 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ML +AL+ +    +     +           +  D +  + E
Sbjct: 109 GLRAIAVAGTHGKTTTTSMLAVALTELGLDPSYAIGGDLAG---PGTNALHGDGEVFVAE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S             P +A++  +   H +N++ ++EI  +         + G   + 
Sbjct: 166 ADES-----DRSFQKYDPEVAIVLNVELDHHANYASMDEIYESFEAFTA-KIRPGGTLVV 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +    L  +        I + G+S+++D ++ K      +S + V L G        
Sbjct: 220 GEHAGARELARRVADREGLDIVTVGESEDSDARILKIVPNGMKSEVTVALDGVEHTFTVS 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N    L   + +  D     +AL+ +     R +       +     + +SY
Sbjct: 280 VPGRHYAHNAAAALAAGARVGIDPAELAQALTAYTGVGRRLQ----LKGEAKGVQVIDSY 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P  M A +  +        G    ++     +   +Q    ++ + L+L + S V  
Sbjct: 336 AHHPTEMTADLEAM----RGAAGASRLLVVFQPHLFSRTQELGKEMGDALALADASVVLD 391

Query: 407 SGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                            +  A      V        +   +      GD+V+
Sbjct: 392 IYPAREDPIPGITSELIIAAARQAGADVTAVHDKAAVPGVVAGMAGPGDLVL 443


>gi|167752866|ref|ZP_02424993.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
 gi|167659935|gb|EDS04065.1| hypothetical protein ALIPUT_01128 [Alistipes putredinis DSM 17216]
          Length = 450

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 70/380 (18%), Positives = 119/380 (31%), Gaps = 36/380 (9%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             M+  +    IPV          +++  A R   KA  I +TGS GKTTT  ++   L 
Sbjct: 76  APMIVKLREAGIPVI---------SEMEFAGRYLGKARTICVTGSNGKTTTTSLIYKILR 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                     +   +IG     +    D D+ + EL    L          R HI V+T 
Sbjct: 127 DAGYNV----ALGGNIGESFAYSVATGDYDWYVLELSSFQLD----GMFRFRAHIGVLTN 178

Query: 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +    +    AK  I +          + DD        K   L +K +   
Sbjct: 179 ITPDHLDRYDYCFQNYVDAKMRITQNQNSRDFFIYSGDDEVIWQQLPKYD-LRMKQLPFA 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K+  A      +    + +    +   +         G H A N +             
Sbjct: 238 AKNAVASGAGDAFLLDGKFTATVGRESVEIDTAKMRIPGLHNAYNAMAAALAALAAGVSP 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                ++  F P E R      A   G    I++S   N  S   A+  + +      G 
Sbjct: 298 IRIRSSIYDFAPVEHRL---EPAGEIGGVAYINDSKATNVDSTWYALESMKRPVVWIAG- 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSET 429
                      G    + +  L        +  +   G     L ++    I  +  +++
Sbjct: 354 -----------GTDKGNDYEPLKRFARE-KVHTLVCMGIDNRKLVESFTGIIPEIISTDS 401

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +D      + +   GDVV++
Sbjct: 402 LDAAMQAARKASRPGDVVLL 421


>gi|290476452|ref|YP_003469357.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
 gi|289175790|emb|CBJ82593.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus bovienii SS-2004]
          Length = 491

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 140/413 (33%), Gaps = 49/413 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV +T + A    +       IPV        A   LA   R R     IAI G+
Sbjct: 77  RGASVVVASTAISADNPEIIAAREARIPVI-----RRA-EMLAELMRYRHG---IAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+    +        +                     + I E   S    + 
Sbjct: 128 HGKTTTTAMIAGIYAQAGLDPTFVNGGLVK---AAGTHARLGTSRYLIAEADESDASFLH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AVIT I   H+  +    E +          L   G   +  DD   + L
Sbjct: 185 -----LQPMVAVITNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVVKEL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +      + I ++G S+ AD ++  ++Q + +  +   +     + VV +  G H A 
Sbjct: 240 IPRI----GRYITTYGFSEEADIRITHYEQKAAQGFFTISRDDLPELHVVLNAPGRHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNAN 349
           N    + + +    +    + +L+ F     R         +    +    ++ + Y  +
Sbjct: 296 NATAAVAVATEEGINDAAILASLAEFQGTGRRFDFLGEFSLKHINGKEGRVMLVDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWL 406
           P  + A I       P        V+         ++  + D A +LS  ++     V+ 
Sbjct: 356 PTEVDATIKAARAGWPDK----RIVMLFQPHRYTRTRDLYDDFANILSQVDVLLMLDVYS 411

Query: 407 SGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +G          +L   +     +   +    + +   +   + + D+V+V+ 
Sbjct: 412 AGETPIPGADSRSLCRTIRSRGKLDPIFVSDSEQISAMLSQVIENNDLVLVQG 464


>gi|299821556|ref|ZP_07053444.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
 gi|299817221|gb|EFI84457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Listeria grayi
           DSM 20601]
          Length = 455

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 94/321 (29%), Gaps = 45/321 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            +   EL    L  I        PHI+VIT I  AHL   +  +E   AK +I +     
Sbjct: 163 QYITMELSSFQLMGID----TFHPHISVITNIYEAHLDYHADRDEYVQAKWKIQKNQTAD 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N+D    + L  K+ A  +    +         Q        +   +    +   
Sbjct: 219 DILVINWDQEELKTLTKKTKAQIVPFSTT---------QKLGLGSYVQNGKLMFNDEIVG 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N+L ++ +   +    +  ++ L  F     R    +         
Sbjct: 270 ERADILLPGDHNLENILASIAVAKTIGVSNEQIMQVLKTFKGVPHRT---QFVTEWHGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + ++A+    +      G            G    +   +L       +
Sbjct: 327 FYNDSKATNILATQSALKGFKEPVVLLAG------------GLDRGNEFDELLPFFQ--H 372

Query: 401 ISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +  +   G     +          V Y E ++        +   GDV+++    +S    
Sbjct: 373 VKALVCFGETAEKIGRIGKQSGTEVFYVENVEAAVPVAFEASSPGDVILLSPACASWDQY 432

Query: 453 -----NSCG-FYRLINLLLEE 467
                        +   L  E
Sbjct: 433 RTFEVRGNKYMEAI-EALQNE 452


>gi|221213225|ref|ZP_03586200.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
 gi|221166677|gb|EED99148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD1]
          Length = 461

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 117/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRQNSRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|313888463|ref|ZP_07822130.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
 gi|312845492|gb|EFR32886.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Peptoniphilus
           harei ACS-146-V-Sch2b]
          Length = 439

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 103/324 (31%), Gaps = 39/324 (12%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R     D+ + E     L      T   +PHIAV+T +   HL      +    AK +IF
Sbjct: 142 REAKSEDYVVIEASSFQL----ENTVDFKPHIAVLTYVTSDHLDWHKTKQNYVDAKFKIF 197

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  ++     LNY+D     L  K +    K  +S  K+      L + K          
Sbjct: 198 KNQDENDFAILNYEDK---ELAEKYNLKAEKYYFSMEKTSEKGAYLDQGKIYFTDGDKTE 254

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           ++       +            ++   ++ I    +  +I +        G   R     
Sbjct: 255 EILDVKDIKIPGDHNIRNIMAAVIACKLLKIDLDVIKKSIVSF------TGVEHRIEFVR 308

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   NP S + A++ +        G  + + G     G    +   +L E
Sbjct: 309 EVDGVKYYNDSKGTNPDSTEVAVAAMD-------GDVVLIAG-----GYDKGADFDNLIE 356

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
             S   +    L G     + ++     +  + +E +       +   + GD V++    
Sbjct: 357 K-SKDKLKTAILFGQTAEKISNSCKNHGVEFYITEDLKKAVELAKKLAIKGDDVLLSPAC 415

Query: 451 SS---------NSCGFYRLINLLL 465
           +S             F  L+  L+
Sbjct: 416 ASWDMYKSFEVRGQHFKDLVKELM 439


>gi|239623443|ref|ZP_04666474.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521474|gb|EEQ61340.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 452

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/394 (16%), Positives = 119/394 (30%), Gaps = 36/394 (9%)

Query: 70  VNTDMVASIGSLSIPVF-GVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V   +++    L  P    VDD     L ++   A   S   + AITG+ GKTTT  +  
Sbjct: 69  VELCIISPGIPLDSPFVAVVDDAKIPILGEI-ELAYQCSLGRLAAITGTNGKTTTTALTG 127

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHI 186
             L +  +          +IG P T   + +  D   + E+    L           P +
Sbjct: 128 EILKAKYE----ETFVVGNIGAPYTSKVLEMTEDSVTVAEVSSFQL----ETIMDFHPDV 179

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL+    +E     K  I     +   + LNYDD                 
Sbjct: 180 SAILNITPDHLNRHGTMENYIRIKECITLNQTEKDAVVLNYDDPVLREFGQDPELKPRVI 239

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +S  +  +  F +         + +  Q   +++ V    +      N    +   +I 
Sbjct: 240 WFSSREKLSDGFCMS------GDNIVYCQKGRETILVNVRDMKLLGRHNYENVMAAAAIG 293

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                       V         R      +      ++S   NP +   A+  +      
Sbjct: 294 LEMGVALADIGRVVESFNPVEHRIEFVRERTGVRYYNDSKGTNPDAAIQALRAM------ 347

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
             G  + + G     G    S + D         + ++ L G     + +   +     +
Sbjct: 348 -PGPTLLIAG-----GYDKNSEYDDWVAEF-EGKVRYLVLIGQTRDKIAECAKKHGFTEI 400

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
            Y+E M             GD V++    +S   
Sbjct: 401 MYAEDMQEAVQVCAVYADIGDYVLLSPACASWGM 434


>gi|223933921|ref|ZP_03625882.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
 gi|223897398|gb|EEF63798.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptococcus suis
           89/1591]
          Length = 447

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 125/381 (32%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV+        L  L       S A I+ ITGS GKTTT  M+   L
Sbjct: 83  DNPMVEKAIGKGIPVW----TEVELAYLV------SDAPIVGITGSNGKTTTTTMIAEVL 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        +   + EL    L          RPHIAV+
Sbjct: 133 NA----GNKPAKLCGNIGYPASSVAQTATAEDTLVMELSSFQLMGTE----SFRPHIAVV 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E+  +AK  I   +     + LN++    + L  +        +  
Sbjct: 185 TNLIASHIDYHGTFEDYVAAKWMIQGQMAAEDFVVLNFNQKEAKELAEQ---TKATVVPL 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                     L   K   +        +           G H  +N L T+ +  +L  D
Sbjct: 242 STLEVVDGAYLADGKLYFKG-------EYIMDADQIGVPGSHNVENALATIVVAKLLGVD 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++LS F   + R    +        +  ++S + N  +          +S     
Sbjct: 295 RQAIQESLSAFGGVKHRL---QFVGEINGVSFYNDSKSTNILA------TQKALSGFDNS 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   L    +  + + G     ++ A  ++ +    + 
Sbjct: 346 KVILIAG-----GLDRGNEFDELVPDLV--GLKKMVILGQSAPRVQRAADKAEVETIEAL 398

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 399 DIADATRKAFAIAEKGDIVLL 419


>gi|149002384|ref|ZP_01827326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182683613|ref|YP_001835360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
 gi|237650293|ref|ZP_04524545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821989|ref|ZP_04597834.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|226722948|sp|B2IN76|MURD_STRPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147759699|gb|EDK66690.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP14-BS69]
 gi|182628947|gb|ACB89895.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae CGSP14]
          Length = 450

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 140/391 (35%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   +   D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|330832323|ref|YP_004401148.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
 gi|329306546|gb|AEB80962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           ST3]
          Length = 449

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 125/381 (32%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV+        L  L       S A I+ ITGS GKTTT  M+   L
Sbjct: 85  DNPMVEKAIGKGIPVW----TEVELAYLV------SDAPIVGITGSNGKTTTTTMIAEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        +   + EL    L          RPHIAV+
Sbjct: 135 NA----GNKPAKLCGNIGYPASSVAQTATAEDTLVMELSSFQLMGTE----SFRPHIAVV 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E+  +AK  I   +     + LN++    + L  +        +  
Sbjct: 187 TNLIASHIDYHGTFEDYVAAKWMIQGQMAAEDFVVLNFNQKEAKELAEQ---TKATVVPL 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                     L   K   +        +           G H  +N L T+ +  +L  D
Sbjct: 244 STLEVVDGAYLADGKLYFKG-------EYIMDADQIGVPGSHNVENALATIVVAKLLGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++LS F   + R    +        +  ++S + N  +          +S     
Sbjct: 297 RQAIQESLSAFGGVKHRL---QFVGEINGVSFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   L    +  + + G     ++ A  ++ +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDLV--GLKKMVILGQSAPRVQRAADKAEVETIEAL 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 401 DIADATRKAFAIAEKGDIVLL 421


>gi|91792018|ref|YP_561669.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
 gi|91714020|gb|ABE53946.1| UDP-N-acetylmuramate [Shewanella denitrificans OS217]
          Length = 464

 Score = 59.9 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 116/363 (31%), Gaps = 18/363 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++ +    G     +     ++    + +F + E   
Sbjct: 109 VLAVSGTHGKTSTSSMLA---WILEYSGYEPGFLIGGVPQNFGVSARLGNSNFFVVEADE 165

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R      +P   VI  +   H   F  +  I      +   +   G I    
Sbjct: 166 YDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLTAIQRQFNHVIRTVPGQGKIIWPA 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +    + +         +T  +     N +  L    +       E ++           
Sbjct: 226 NSEAVQQVIEMGCWSEQETYSAGVHDFNTEKTLGWHAKTLSADAHEFEVYFDGHSQGVMS 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N+   +  ++          +A++         +R       G   + D+  +
Sbjct: 286 WNLIGQHNVENAVMAIAAARHVGVVPAQAMAALSEFSPPKRRLELLGTIGGVAVFDDFAH 345

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHV 404
                     ++    +  G G+   VL    E    +     H D LA  L   + +++
Sbjct: 346 H---PTAIDSTLQGLRAKVGNGKITVVL----EPRSNTMKQGVHKDTLAHSLVRADQAYL 398

Query: 405 WLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + +      LK ++   SI V     ++ +   +      GD +V+  SN  GF  +   
Sbjct: 399 YQADSISWDLKSSMQTASIPVSVKTDIEQIIDALCHDAKAGDTIVI-MSNG-GFNGIHKK 456

Query: 464 LLE 466
           LLE
Sbjct: 457 LLE 459


>gi|83719762|ref|YP_441715.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
 gi|83653587|gb|ABC37650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 470

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +    +++ +       +   V  H 
Sbjct: 222 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPADERFAVYWRSERVGAVDWHV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   +  S   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 447 GGVHQKLLDALSA 459


>gi|254804973|ref|YP_003083194.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
 gi|254668515|emb|CBA05892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis alpha14]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 116/409 (28%), Gaps = 46/409 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D+V +I +  +P             LA     R    ++ + G+ GKTTT  ML   L  
Sbjct: 78  DVVEAILNRGLPYISGP------QWLAENVLHRH--WVLGVAGTHGKTTTASMLAWVLEY 129

Query: 133 IK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLV 182
                                    P           F + E                  
Sbjct: 130 AGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSKFVHY 187

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP   V+  +   H   F+ +  I +    +   +   G I  N      +    K    
Sbjct: 188 RPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDKGCWT 247

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            ++   +       +   +  +  ++ S+  +     +  V    IG H   N L  +  
Sbjct: 248 PVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLIGRHNRMNALAVIAA 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISV 359
              +  D+ TA +AL  F   + R +             F     +       ++  +  
Sbjct: 301 ARHVGVDIQTACEALGAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIQGLRQRVGG 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALKDA 417
              ++          LG M              A  +SL +   V+    G      +  
Sbjct: 361 ARILAVLEPRSNTMKLGTMKS------------ALPVSLKDADQVFCYAGGVDWNVAEAL 408

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 409 APLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|228992648|ref|ZP_04152574.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
 gi|228766980|gb|EEM15617.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           pseudomycoides DSM 12442]
          Length = 450

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 113/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   + +   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTTLTFEMLKE---GQKHPVIAGNIGTVACEVVQAAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----TFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L A S    +    +         ++ +   C +   +  + +     
Sbjct: 220 SVINADDVDVMALSANSKGQKVLFSTT---------KVIEDGACIKDGALYFKGEKIVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L  + +  I  L  F   + R                
Sbjct: 271 QDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPVILLAG------------GLDRGNEFDDLIPYF--EHVK 373

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   + ++       S   DGDV+++
Sbjct: 374 AILTYGQTAPKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|220906333|ref|YP_002481644.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 7425]
 gi|254765995|sp|B8HWY0|MURC_CYAP4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219862944|gb|ACL43283.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7425]
          Length = 482

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 131/416 (31%), Gaps = 33/416 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +         L  P+    D+L AL +     R +S    IA+ G+ GKTTT  M
Sbjct: 79  TAIHADNPEYKMAVELGCPILHRSDLLAALIE-----RYQS----IAVAGTHGKTTTSSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         I                  +   G+ E  ++   E         P 
Sbjct: 130 IGYLLLQGGVDPTIIIGGEVQ--------AWEGNARTGMGEYLVAEADESDGSLAKFAPQ 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I   H  ++S +E++           +     +          +      +   
Sbjct: 182 IGVITNIELDHPDHYSNLEQVIKIFETFANHCQTVVACWDCPTIRDRLTVLPDQSVVSYS 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                G   + D      +          +      E+    +G H  +N L  + +  +
Sbjct: 242 LFRESGADYSVDQISYGPQ---GTLAQVWERGELLGELSTKLLGAHNLKNALAAVAVGRL 298

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D  T  + ++ F     R +    A    F        +   A++ A    L     
Sbjct: 299 LGLDFITISRGIARFEGARRRFEVRGEAHGIRFVDDYAHHPSEIRATLAAGRLQLKSREE 358

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF-----HVLALKDA 417
                +  V          + +F  + ++     ++   + ++ +G          L D 
Sbjct: 359 FISPWQRLVAVFQPHRYTRTFTFLTEFSQAFGDADLVVLTDIYSAGERDRLVQGQHLADC 418

Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEFPAI 471
           +      V Y  +++ + LF++ +L  GD+V+V      G   ++I  LL+ +  +
Sbjct: 419 MAEYHAQVQYQPSLEEVKLFLKQTLRPGDLVLV---LGAGNLNQIIPELLDYYQTL 471


>gi|161525944|ref|YP_001580956.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189349337|ref|YP_001944965.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
 gi|160343373|gb|ABX16459.1| UDP-N-acetylmuramate [Burkholderia multivorans ATCC 17616]
 gi|189333359|dbj|BAG42429.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Burkholderia multivorans ATCC 17616]
          Length = 461

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 117/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRQNSRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAQAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|260893414|ref|YP_003239511.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
 gi|260865555|gb|ACX52661.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ammonifex degensii
           KC4]
          Length = 457

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 121/420 (28%), Gaps = 53/420 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGA-------LNKLAVAARLRSKATIIAITGSVGKTTT 122
              +    + S  +P   V  V  A       + +L +A R   +A ++A+TG+ GKTTT
Sbjct: 62  SAKEFDLLVLSPGVP-LTVPPVREAKEAGIEIVGELELAFRFA-RAPVVAVTGTNGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
             +      +             +IG+P   +       D  + E+    L      T  
Sbjct: 120 TALTGAIFQAAGLRTW----VAGNIGLPLSEVVEEARPEDILVVEVSSFQL----ETTST 171

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P +AVI  + P HL           AKA IF          LNYDD     + A S  
Sbjct: 172 FKPVVAVILNLTPDHLDRHGDFNSYRQAKARIFARQTDKEVTVLNYDDPEVRNMAADSCG 231

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +        +        +     E           +        G H  +N L    
Sbjct: 232 RVLFFSRRHKLATGVWVAKGEILVKWEGVE-----GKVTEVASLALPGAHNLENALAATA 286

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   ++   + L  F     R               +++S   NP +   A+    
Sbjct: 287 AAVAQNVPLEVIGRVLREFKGVAHRL---ELVAEINGVKYVNDSKGTNPEATIKALEAYD 343

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G            G    S    LA  +    +  + L G     L      +
Sbjct: 344 CPIVLIAG------------GRNKGSDFRLLASKMKE-KVKALVLIGESAPLLAAQAKAA 390

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
               +  +  +       +     GDVV++    +S             F + +  L++E
Sbjct: 391 GVSDIVLARDLPDAVRRAREKARPGDVVLLSPACASWDMFRNYEERGECFRQAVKELIQE 450


>gi|283798343|ref|ZP_06347496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|291073926|gb|EFE11290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium sp.
           M62/1]
 gi|295092803|emb|CBK78910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 448

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 99/334 (29%), Gaps = 31/334 (9%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHI 186
                I K          +IG P T   +        + E+    L          RP++
Sbjct: 122 ALTGEIMKACYDSVFVVGNIGDPYTAHALETTEKSVTVAEVSSFQL----ETIMDFRPNV 177

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           + I  I P HL     +E     K  I +  ++     LNYDD              +  
Sbjct: 178 SAILNITPDHLDRHKTMERYIEIKEGITKNQKENDVCVLNYDDPVLREFGETLKCKVVYF 237

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  K       +      ++  E+             +G H  +N++  + I   +
Sbjct: 238 SSREKLKKGLFLDGDQIVYKDGETVTEIVN-----IHELKLLGRHNHENVMAAVAIAMNM 292

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +DT  + +  F   E R         +      ++S   NP +   AI  +      
Sbjct: 293 DVPMDTIRRVVKRFEAVEHRI---EFVTERFGVKYYNDSKGTNPDAAMQAIKAM------ 343

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HV 424
             G  + + G     G    S + +  E      + ++ L G     + +   R     +
Sbjct: 344 -PGPTLLIAG-----GYDKHSEYDEWIESFG-GKVRYLVLIGQTRDKIAECAKRHGFTDI 396

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
            Y+E +        S    GD V++    +S   
Sbjct: 397 MYAEDLKEAVQVCASYANAGDNVLLSPACASWGM 430


>gi|260576888|ref|ZP_05844871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
 gi|259020925|gb|EEW24238.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodobacter sp.
           SW2]
          Length = 466

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 124/405 (30%), Gaps = 41/405 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV-------FGVD-DVLGALNKLAVAARLRSK-- 107
             A   G   ++ +  +     + +  +         VD D+       A       +  
Sbjct: 61  AQAFD-GVAALITSPGIPHLYPAPNKVIARAYEAGVPVDNDIGLFFRSFATPDWDNFETA 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++ +TGS GK+TT  ++   L    +          +IG  +      VD +  + EL
Sbjct: 120 PRVVCVTGSNGKSTTTALIHHILEVAGR----PTQMAGNIGRGVLDIDPAVDGEVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P +AV T ++P HL   +G+    +AK  +F        +    
Sbjct: 176 SSYQTDLARALT----PDVAVFTNLSPDHLDRHNGMGGYFAAKRRLFAEGGPDRAVIGVD 231

Query: 228 DDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +         L   +    +  I S  K +   + +   K    +     Q+    +  V
Sbjct: 232 EVEGRYLAGQLAEGAADDRVIRISSGTKLEEFAWSVFARKGFLAEWRRGKQVASIDLRGV 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN          L        +A   F     R    +    +     +++
Sbjct: 292 AGLPGAHNHQNACAAYAACRSLGVGPKLIEQAFHSFAGLPHRS---QTVGEKAGVRFVND 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S   A+    +I          + G M + G + ++    L  V         
Sbjct: 349 SKATNVDSAAKALQAFPRIR--------WIAGGMGKDGGI-KALVPHLGSVAKA------ 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G         L  +      ETM+            G+VV++
Sbjct: 394 YLIGHSARDFALEL-GATPYEICETMERAVAAATRDAQAGEVVLL 437


>gi|319791669|ref|YP_004153309.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
 gi|315594132|gb|ADU35198.1| UDP-N-acetylmuramate/alanine ligase [Variovorax paradoxus EPS]
          Length = 494

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 73/415 (17%), Positives = 132/415 (31%), Gaps = 43/415 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA     GA  VV +T + +            IPV         +  LA   RL+  
Sbjct: 54  FVGHAAAHIEGADAVVTSTAVQSDNPEVLAAREKRIPVV----PRALM--LAELMRLKQG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++   L +       +     +              D+ + E 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLDAAGLDPTFVIGGRLNS---AGANAQLGSGDYIVVEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLN 226
             S    +  L     P +AV+T I   H+  +     ++  A  +    +   G   L 
Sbjct: 162 DESDASFLNLL-----PVMAVVTNIDADHMETYGHDFAKLKKAFVDFLHRMPFYGVAILC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD+    + A+         +       A        Q    +     +    + +V +
Sbjct: 217 TDDAAVRDIVAQVTCPVTSYGFGEDAQVRAVDVRAVGGQMHFTAQRRNGVTLPDLPIVLN 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDE 344
             G H  +N L  + +   L    +   + L+ F     R + Y             + +
Sbjct: 277 LPGEHNVRNALSVIAVAVELGIPDEAVQRGLAGFKGVGRRFQSYGEVSVPGGTGSFTVID 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A I+      P        VL         ++    D  +V+   +   +
Sbjct: 337 DYGHHPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVKVIGTADSVLL 392

Query: 402 SHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
             V+ +G           L  AL  +  V   + + +  +   +  +   GDVV+
Sbjct: 393 GEVYAAGEAPIVAADGRTLARALRVAGKVEPVFVDDIAAMPQAVLDNARPGDVVL 447


>gi|257415612|ref|ZP_05592606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis AR01/DG]
 gi|257157440|gb|EEU87400.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           faecalis ARO1/DG]
          Length = 456

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L             +         +         +  +    +   
Sbjct: 220 DTLILNWNQVELQTLAK----------TTAANVLPFSTKEAVEGAYLLEGKLYFNEEYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         + L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVAKLKNVSNVQIRQTLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNILATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     L +A  ++    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKEKLAEAAKKANIETILFAENVQTAVTIAFDYSGKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|225548647|ref|ZP_03769694.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
 gi|225370677|gb|EEH00113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 94a]
          Length = 451

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKV------RVILFSEFNPCDF--DQNIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKGIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|114566361|ref|YP_753515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114337296|gb|ABI68144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 453

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/341 (19%), Positives = 124/341 (36%), Gaps = 31/341 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI+G+ GKTTT  +L   L+   +          +IG+PLT     +     + EL   
Sbjct: 113 LAISGTNGKTTTTSLLHYILAQAGRN----ALAGGNIGIPLTTLLDSISAGTIVVELSS- 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                   +   RP+I  +  I P HL+    +E    AKA+IF   +       NY+DS
Sbjct: 168 ---FQLESSSSFRPYICGLLNITPDHLNRHKTMERYIEAKAKIFAQQKPGDYAVFNYEDS 224

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +     A   +T +   + +  +         + +    +Q   +  EV   G   
Sbjct: 225 ILREMARSCPA---QTFFFSSERELMEGAFINNGVITIKRAGIIQEIARIDEVSLRG--K 279

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N+L    + S+     +   +AL+ F     R               +++S   NP
Sbjct: 280 HNLENILAATMMASLAGVSPEDIRQALASFPGVRHRM---EELGLYDDVLYVNDSKATNP 336

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++  A+   +Q      G            G    S    LA ++    +  + L G  
Sbjct: 337 EAVMKALDSFNQPIILIAG------------GRNKGSSFSQLAGLIKQ-KVRELVLLGEA 383

Query: 411 VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +KDA+  +   ++H  E +    +        G+VV++
Sbjct: 384 REEIKDAVIDAGFRNIHEVEDLQAAVIKAHELARKGEVVLL 424


>gi|322412250|gb|EFY03158.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 452

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 31/291 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  +       +PHIAVIT + P HL      E+  +AK  I   +  
Sbjct: 161 NDTLVMELSSFQLMGVD----TFKPHIAVITNLMPTHLDYHGSFEDYVAAKWRIQAEMTA 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN +      L   + A                 Q        E   +  +    
Sbjct: 217 EDYLILNANQEISAALAKITKA----------TVIPFSTQEVVDGAYLEDGMLYFKGHPI 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V     G H  +N L  + +  +     D  ++ LS F   + R    +        
Sbjct: 267 MPVVNLGVPGEHNIENALAAIAVAKLSGIADDVIVEVLSHFGGVKHRL---QLVGKIKDI 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S + N  +          +S     + + + G     G    +   DL   L   
Sbjct: 324 TFYNDSKSTNILA------TQKALSGFDNKKLVLIAG-----GLDRGNEFDDLVPDL--R 370

Query: 400 NISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + + G     +K A    ++    +  +             GD +++
Sbjct: 371 GLKQMIILGESAERMKRAAETANVPYREAADVAAATELAFQEAQAGDTILL 421


>gi|95930730|ref|ZP_01313463.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95133210|gb|EAT14876.1| UDP-N-acetylmuramate--alanine ligase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 456

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 79/396 (19%), Positives = 134/396 (33%), Gaps = 39/396 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VV +T + +    +       V  +  A   LA   RL+     IA+ G+ GKTTT 
Sbjct: 65  AQVVVTSTAVSSDNPEVVEAHRLLVPVIPRA-EMLAELMRLKYG---IAVAGTHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   LS        +        V   L  +  +   G  E  +    E       + 
Sbjct: 121 SMVATLLSHGGIDPTAV--------VGGRLNALGSNAKLGQGEFMVVEADESDGSFLKLT 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T I   HL  +SG++EI     +    +   G   L  DD+  + L  +     
Sbjct: 173 PTIAVVTNIDEDHLDYYSGMDEIRGVFLDFINKIPFYGLAVLCLDDANIQTLLPQVQK-- 230

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGI 302
                ++G +  ADF   + +  +  +   V  + +    +     G H   N L +L +
Sbjct: 231 --RYVTYGLTPQADFSATEIEHRAGGTEFTVHFRQEKLGRIRLEMPGRHNVLNALASLAV 288

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK-------- 354
              L   + T  +    F   +      R  +      ++ + Y  +PA +K        
Sbjct: 289 ARELDVPMKTICEGFESFAGVQR-----RFQIKLDDEVMVVDDYGHHPAEIKATLSAARN 343

Query: 355 -AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                V+    PH   R  A+  D       +    +      S   I  V   G     
Sbjct: 344 GWDRRVVVIFQPHRYSRTQALFDDFVTAFYQADVLLVMDVYAASEAPIEGV--CGED--- 398

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           L  A+    H  V Y  + + +   +   L   D+V
Sbjct: 399 LAKAIAGHGHRQVTYCNSEEAVVKQVLDVLKPDDIV 434


>gi|170768370|ref|ZP_02902823.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
 gi|170122474|gb|EDS91405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Escherichia
           albertii TW07627]
          Length = 438

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 128/375 (34%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I++  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRTAKLRIYDNAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPDV--AEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINL 463
                   F RL   
Sbjct: 422 NFEQRGNEFARLAKE 436


>gi|319757602|gb|ADV69544.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis JS14]
          Length = 447

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV+        L  L       S   I+ ITGS GKTTT  M+   L
Sbjct: 83  DNPMVEKAIGKGIPVW----TEVELAYLV------SDVPIVGITGSNGKTTTTTMIAEVL 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        +   + EL    L           PHIAV+
Sbjct: 133 NA----GKKPAKLCGNIGYPASSVAQTATAEDTLVMELSSFQLMGTE----SFHPHIAVV 184

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E+  +AK  I   +     + +N++    + L  +        +  
Sbjct: 185 TNLIASHIDYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEAKELAGQ---TKATVVPF 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +       L   K   +        +           G H  +N L T+ +  +L  D
Sbjct: 242 STQEVVDGAYLADGKLYFKG-------EYIMDADQIGVPGSHNVENALATIVVAKLLGVD 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++LS F   + R    +        +  ++S + N  +          +S     
Sbjct: 295 QQAIQESLSAFGGVKHRL---QFVGEINGVSFYNDSKSTNILA------TQKALSGFDNS 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   L    +  + + G     ++ A  ++ +    + 
Sbjct: 346 KVILIAG-----GLDRGNEFDELVPDLV--GLKKMVILGQSAPRVQRAADKAEVETIEAL 398

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 399 DIADATRKAFAIAEKGDIVLL 419


>gi|317129299|ref|YP_004095581.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474247|gb|ADU30850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 451

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 120/391 (30%), Gaps = 45/391 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVL--GALNKL------AVAARLRSKATIIAITGSVGKT 120
           +++ D+   + +  IP     + L   A+ K          A    +A II ITGS GKT
Sbjct: 68  LISDDLDYVVKNPGIPY---TNPLVSAAMEKAIPVLTEVELAYHICEADIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT   +   L   +K         N   V   +A+   + +  + EL    L  I     
Sbjct: 125 TTTTYIYEMLKGSEKD---PLLAGNIGEVACEVAQKATEKNVLVTELSSFQLMGIDEF-- 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +P I+++  +  AH+     ++    AK  IF+       I  N DD     L     
Sbjct: 180 --KPKISLLLNLVEAHIDYHGTMDAYVHAKGNIFKNQTSNDYIIYNADDKKVSKLVELGQ 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A              +     K   C E  ++ V  +           G H   N L   
Sbjct: 238 AT---------LIPFSTKGEMKHGACIENGYLTVFGKRLLPVEEMSLPGEHNVANGLAAA 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +  A  +   + L  F     R    +        T  + S   N  +   A+   
Sbjct: 289 AAAHLAGASEEKIRQVLKSFSGVAHRL---QYVDKINGRTFYNNSKATNVPATITALKAF 345

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q      G            G        DL        +  V   G     L +   +
Sbjct: 346 EQPIVLIAG------------GLDRGLSFDDLIPYFKK-KVKCVVSYGETAQKLVETAKK 392

Query: 421 SIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    VH  +T++        +  +GD++++
Sbjct: 393 ANIELVHCEKTLENAVKKAYVNSEEGDIILL 423


>gi|254509149|ref|ZP_05121249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
 gi|219547946|gb|EED24971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus 16]
          Length = 441

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 74/379 (19%), Positives = 134/379 (35%), Gaps = 53/379 (13%)

Query: 86  FGVDDVLGALN----KLA-----------VAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             V +   AL     +LA                +    +IAITGS GK+T  ++  +  
Sbjct: 73  LVVANPGIALATPEIQLALVAGVPVVGDIELFAWQVDKPVIAITGSNGKSTVTDLTGVVA 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +             +IGVP     +  D D  + EL    L      T  +    A   
Sbjct: 133 KAAGLKV----GVGGNIGVPALDL-LAQDADLYVLELSSFQL----ETTSSLSLKAAAFL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  H+  + G+E    AK  IF+  +       +         KA    +G K +  F
Sbjct: 184 NLSEDHMDRYEGMEGYRQAKLRIFDHADACIVNADD---------KATYPDVGDKKLIEF 234

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             + +AD+ L       E    E   QG +  +    +      N+   L ++++L+   
Sbjct: 235 SLNGSADYHLA------ELQGQEFLFQGSAPIMPSSDLTLVGRHNIANALVVLALLSQVD 288

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                 L       G   R +   +      +++S   N AS  AA+S L       +G+
Sbjct: 289 VDLSLGLDALKSYSGLTHRCQVVADNQGIKWVNDSKATNVASTLAALSGL-----SLQGK 343

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              ++G + +  + S     +LA VL+  N+  +   G         +       Y + M
Sbjct: 344 LYLLVGGVGKGADFS-----ELAPVLASLNV-QLCCFGEDG---SQFMSLHPSAKYFDNM 394

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           + +  +I   L  GD+V++
Sbjct: 395 EAIVAWINPQLQAGDMVLL 413


>gi|91776858|ref|YP_546614.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
 gi|91710845|gb|ABE50773.1| UDP-N-acetylmuramate [Methylobacillus flagellatus KT]
          Length = 460

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 116/373 (31%), Gaps = 40/373 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSS--------IKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           ++A+ G+ GKTTT  ML   L          I       G      GVP    +      
Sbjct: 111 VLAVAGTHGKTTTTSMLAWILEYGGLAPGFLIGGVPENFGVSARLPGVPRQDDKGV--SP 168

Query: 162 FGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F + E                  RP   ++  +   H   F  +E I +    +   +  
Sbjct: 169 FFVIEADEYDTAFFDKRSKFVHYRPRTVILNNLEFDHADIFPDLEAIETQFHHLVRTVPS 228

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G +  N  +     +  +     ++   +  ++ + D            S+        
Sbjct: 229 NGLVVANGKEGSLRRVIKRGCWTPVEYFGTDWQATDVDAA---------GSFTVRFQGKA 279

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              V    +G H   N L  L         +D  I ALS F   + R +           
Sbjct: 280 YGRVQWQLLGEHNRMNALAALAAARHAGVAIDAGIVALSQFRSVKRRME----VRGTANG 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--- 396
             + + +  +P ++    + ++ +       RI  +     +   S +  + + +     
Sbjct: 336 ITVYDDFAHHPTAI---ATTVAGLRDKVGKARILAV-----LEPRSNTMKLGVMKDALPG 387

Query: 397 SLYNISHVWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           SL +   V+  G H    A     P        ++M  L   I +    GD ++V  SN 
Sbjct: 388 SLADADLVFCYGEHLGWDAASALQPIQHKAAAFDSMSVLIEAIAAEAQPGDHILV-MSNG 446

Query: 455 CGFYRLINLLLEE 467
            GF  +   LLE 
Sbjct: 447 -GFGGIHERLLER 458


>gi|146318130|ref|YP_001197842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 05ZYH33]
 gi|158514131|sp|A4VTK3|MURD_STRSY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145688936|gb|ABP89442.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           05ZYH33]
          Length = 449

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV+        L  L       S   I+ ITGS GKTTT  M+   L
Sbjct: 85  DNPMVEKAIGKGIPVW----TEVELAYLV------SDVPIVGITGSNGKTTTTTMIAEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        +   + EL    L           PHIAV+
Sbjct: 135 NA----GKKPAKLCGNIGYPASSVAQTATAEDTLVMELSSFQLMGTE----SFHPHIAVV 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E+  +AK  I   +     + +N++    + L  +        +  
Sbjct: 187 TNLIASHIDYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEAKELAGQ---TKATVVPF 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +       L   K   +        +           G H  +N L T+ +  +L  D
Sbjct: 244 STQEVVDGAYLADGKLYFKG-------EYIMDADQIGVPGSHNVENALATIVVAKLLGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++LS F   + R    +        +  ++S + N  +          +S     
Sbjct: 297 QQAIQESLSAFGGVKHRL---QFVGEINGVSFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   L    +  + + G     ++ A  ++ +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDLV--GLKKMVILGQSAPRVQRAADKAEVETIEAL 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 401 DIADATRKAFAIAEKGDIVLL 421


>gi|261377827|ref|ZP_05982400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
 gi|269146129|gb|EEZ72547.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria cinerea ATCC 14685]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 116/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQVGEANADGSFGVLLDGKKAGHVAWDLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGIDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S              +   V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKAALPESLK------------DADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H S+  D     I      GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGKLHVSKDFDAFVAEIVKHTEAGDHILV-MSNG-GFGGIHGKLLEALR 458


>gi|167837947|ref|ZP_02464806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis MSMB43]
          Length = 504

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 120/369 (32%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWMLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +     ++ +       +   V  H 
Sbjct: 256 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPVDERFAVYWRSERVGVVGWHV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRLNALAAIAAARHVGVPPAQAAAALATFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIEMTIAGLRARIGCENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L+DAL          + +  L   + +S   GD V+V  SN  GF
Sbjct: 423 FGYGAPTGRDALGWNLRDALAPLGDKARAFDDLHTLVKAVAASARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 481 GGVHQKLLD 489


>gi|318060323|ref|ZP_07979046.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actG]
 gi|318077690|ref|ZP_07985022.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces sp. SA3_actF]
 gi|333023747|ref|ZP_08451811.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
 gi|332743599|gb|EGJ74040.1| putative UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces sp.
           Tu6071]
          Length = 470

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 142/418 (33%), Gaps = 45/418 (10%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G     GHD    A       VVV++ + A    L       IPV    D L AL     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++    +     +                
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD---APGSNAHHGTG 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E   S         H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 160 EIFVAEADES-----DRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   + R +       +    
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRLQ----LKGEAAGV 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +SY  +P  M A +     +    EGR + V      +   +Q    ++ + L+L +
Sbjct: 331 QVVDSYAHHPTEMAADLEA---MRGAVEGRILVVFQP--HLFSRTQELGKEMGQALALAD 385

Query: 401 ISHVWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            S V           + +               V      D +   +      GD+V+
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVL 443


>gi|295840062|ref|ZP_06826995.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295827778|gb|EDY43980.2| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 142/418 (33%), Gaps = 45/418 (10%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G     GHD    A       VVV++ + A    L       IPV    D L AL     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++    +     +                
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD---APGSNAHHGTG 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E   S         H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 160 EIFVAEADES-----DRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRADLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   + R +       +    
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRLQ----LKGEAAGV 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +SY  +P  M A +     +    EGR + V      +   +Q    ++ + L+L +
Sbjct: 331 QVVDSYAHHPTEMAADLEA---MRGAVEGRILVVFQP--HLFSRTQELGKEMGQALALAD 385

Query: 401 ISHVWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            S V           + +               V      D +   +      GD+V+
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVL 443


>gi|222099426|ref|YP_002533994.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
 gi|254766063|sp|B9K6P5|MURD_THENN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221571816|gb|ACM22628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           neapolitana DSM 4359]
          Length = 432

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 104/373 (27%), Gaps = 57/373 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  +I ITG+ GK+T+  ++                   + G P  +  +  D D+ + E
Sbjct: 101 KEKVIGITGTNGKSTSAALMHH----ALSHRGLKVFLGGNFGTP-AVEALREDYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L          R    V+  I+  HL   S  +E  ++K +     E+  T   N
Sbjct: 156 VSSFQLFWCERP----RVSRFVLLNISEDHLDWHSSFKEYLNSKLKPAFFQEEKDTFVYN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +    E L                     D  + + +   +     +            
Sbjct: 212 KNIETLEDLSRVKPKK--------IPFWTEDTFVEENRLVLQGKSFPLPGSYPLQMKE-- 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                        L +  +           L      +    R          +  ++S 
Sbjct: 262 -----------NILAVSVLYNELFGDVEGFLDSLRSFKPLPHRMEFLGKIKGRSFYNDSK 310

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  ++  A+S   +           V+  MC +G+     +    E      I H+ +
Sbjct: 311 ATSTHAVLGALSNFDR-----------VILIMCGIGKNEN--YSVFIERARPR-IKHLIV 356

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
            G     L+  L  ++       ++  F        +GDV++     +S           
Sbjct: 357 FGEIYRDLRPFLS-NVPYSIVSDLEEAFRKALEVSEEGDVILFSPGGASFDMYENYAKRG 415

Query: 455 CGFYRLINLLLEE 467
             F  +     +E
Sbjct: 416 EHFREIFERYKKE 428


>gi|315181129|gb|ADT88043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 486

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 136/391 (34%), Gaps = 38/391 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   
Sbjct: 94  ENPEIKAAREKRIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S        +                  +   G   + ++   E       ++P   ++T
Sbjct: 145 SEAGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMATIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   L  DD     L  +      + + +
Sbjct: 197 NIEADHMDTYGGDFETLKQTFVDFLHNLPFYGQAILCVDDPVVRELIPRI----SRHVIT 252

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  V+    ++++  +  G H A N    + + +    
Sbjct: 253 YGFSEDADVRIENYRQEGQQGKFTVVRQGRANLDITLNIPGRHNALNASAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D  ++A++       R              ++ + Y  +P  +   I+     + +G 
Sbjct: 313 HDDVILRAMANTQGTGRRFDHLGEFDTGNGDVMLVDDYGHHPTEVGVTIAA----ARNGW 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDA--LPRSIH 423
             +  V+         ++  + D A VL   ++     V+ +G   +A  D   L R+I 
Sbjct: 369 ADKRLVMIFQPHRYTRTRDLYDDFANVLEQVDVLLMLDVYSAGEKPIAGADGRSLCRTIR 428

Query: 424 VH------YSETMDGLFLFIQSSLVDGDVVV 448
                   +      L   + + L DGD+V+
Sbjct: 429 SRGKLDPIFVPDSKTLPSVLANVLQDGDLVL 459


>gi|330718670|ref|ZP_08313270.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Leuconostoc
           fallax KCTC 3537]
          Length = 414

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/421 (17%), Positives = 140/421 (33%), Gaps = 63/421 (14%)

Query: 38  APQEAFFAIKGPHYDGHDFILHAVQKGAGLVV------VNTDMVASIGSLSIPVFGVDDV 91
                F      ++D  D +  + Q     +V          ++     L+IP+    +V
Sbjct: 18  KNGVVFI-----NHDAADIVDDSFQ----YIVKNPGINYQHPIIKQAEKLNIPII--TEV 66

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP- 150
             AL+          K  +I +TGS GKTTT  ++   L +  ++         +IG P 
Sbjct: 67  TVALS--------TFKGRLIGVTGSNGKTTTVSLIRDMLQADGQSV----VTAGNIGTPV 114

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
             +A      D  + EL    L      T  ++P IA +T I  +HL+     E    AK
Sbjct: 115 CEVAGQLRKDDTLLLELSSFQLL----GTPDIQPDIAAVTNIFASHLNYHGSRENYVKAK 170

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
            +I +    T  + LN D +  +     + A                 Q   +   ++Q 
Sbjct: 171 FQITKHQLATQHLVLNADIADSQRFAQDTQAAVTM----------FSRQQSGYYAGADQD 220

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V  Q          +G H  +N+L  + +  +    +++  + LS F   + R    
Sbjct: 221 NLLVDNQIVMPLDNIKLVGPHNLENILAAVSVAKLAGVKIESMRQVLSQFGGVKYRL--- 277

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +       D+S   +  + + A++                L    + G+       
Sbjct: 278 EFVFSHNGIKFYDDSKATDIEATQQALNSFDV--------PTVWLAGGLDRGDDLTRMKD 329

Query: 391 DLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +L       ++  V   G     +     +    ++  +E +        +    GDVV+
Sbjct: 330 NL------KHVKSVIAFGETADKVVSLAKIAGIQNITVTENVMTAAPIAIAQAKAGDVVL 383

Query: 449 V 449
           +
Sbjct: 384 L 384


>gi|312148110|gb|ADQ30769.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi JD1]
          Length = 451

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKGIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|238022772|ref|ZP_04603198.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
 gi|237865975|gb|EEP67111.1| hypothetical protein GCWU000324_02683 [Kingella oralis ATCC 51147]
          Length = 452

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 117/403 (29%), Gaps = 33/403 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           D++ +I + ++P             LA     +    ++A+ G+ GKTTT  ML   +  
Sbjct: 78  DVIEAILNRNLPYISGP------QWLAENVLHQH--WVLAVAGTHGKTTTASML-AWVLE 128

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVIT 190
                A            ++      +  F + E                  RP  A++ 
Sbjct: 129 YAGMGAGFLIGGVPQNFNVSARLPQNESPFFVIEADEYDTAFFDKRSKFVHYRPRTAILN 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H   F  +  I +    +   +   G I  N      + +  +         ++ 
Sbjct: 189 NLEYDHADIFPNLAAIETQFHHLVRTIPGEGLIVANARSGSLKTVLDQGC-------WTP 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 +   +      + ++           +    +G H   N L  +     +   V
Sbjct: 242 VAPFGDNAHWQIANVQPDGAFDVQYQGETVGHIAWDLLGNHNRLNALAVIAAAQHVGVRV 301

Query: 311 DTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           + + +ALS F   + R +    A        F     +     A ++  +     I+   
Sbjct: 302 EHSCQALSQFKNVKRRMEIKGIANGITVYDDFAHHPTAIETTLAGLRQKVGSARIIAVLE 361

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
                  LG M             LA  L   +    +  G          P     H  
Sbjct: 362 PRSNTMKLGTMS----------AALAGSLKDADQVFCYAGGVDWDVASALAPLGSKAHIG 411

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +  D     I ++   GD +++  SN  GF  +   LL +  A
Sbjct: 412 KQFDDFVNRIAAAAQAGDHILI-MSNG-GFGGIHEKLLAQLAA 452


>gi|288575707|ref|ZP_05977461.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
 gi|288567146|gb|EFC88706.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria mucosa ATCC 25996]
          Length = 472

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 113/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           V+   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 93  VIEAILNRGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 139

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 140 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 198 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                    ++  +    +   +  +  +  S+  +    K+  V    +G H   N L 
Sbjct: 258 GC-------WTPVEKFGIEHGWQVGEVNANGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 311 VIAAARHAGVDIQTACEALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M      S                  V+    G     
Sbjct: 371 RVGNARILAVLEPRSNTMKLGTMKAALPESLK------------GADQVFCYAGGVDWDV 418

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I      GD ++V  SN  GF     +L+  L 
Sbjct: 419 AEALAPLGGKLHVGQDFDAFVAEIVKHAEAGDHILV-MSNG-GFGGIHGKLLEALK 472


>gi|148381488|ref|YP_001256029.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153930938|ref|YP_001385863.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934724|ref|YP_001389270.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. Hall]
 gi|166222973|sp|A7FPH5|MURC_CLOB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222974|sp|A5I7S3|MURC_CLOBH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148290972|emb|CAL85108.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A
           str. ATCC 3502]
 gi|152926982|gb|ABS32482.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152930638|gb|ABS36137.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A str.
           Hall]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 128/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEITKAKEKNIKLMDRAD---FLGNLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  ++    I 
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEASCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SNMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKLF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L+D   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIISSDMLGDKLRDRGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENTKDGDLIL 441


>gi|323494203|ref|ZP_08099317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
 gi|323311544|gb|EGA64694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio brasiliensis LMG 20546]
          Length = 451

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 109/362 (30%), Gaps = 22/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   V F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESVFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E + ++         +S  +        +  K  ++ S  +V  QG+  EV     
Sbjct: 223 DMDLEDVLSRGC-------WSETEFSGKQGDWQAEKLIADGSQFKVFFQGE--EVGIVNW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPDLACESLAKFINTKRRLELKGEVNGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A        L  +          +         + +  H D     SL     V+L  
Sbjct: 334 PTA----IELTLGGLRNKVGDDNKIIAVLEPRSATMKRGVHKDTLA-ASLAKADEVFLYQ 388

Query: 409 FHV-LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   + + R        S+++D L   I SS   GD ++V  SN  GF  +   LL
Sbjct: 389 PESIEWSVEDIARQCQQPAQVSDSVDQLVDKIVSSAKSGDHILV-MSNG-GFEGIHGKLL 446

Query: 466 EE 467
            +
Sbjct: 447 AK 448


>gi|167580528|ref|ZP_02373402.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis TXDOH]
          Length = 504

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +    +++ +       +   V  H 
Sbjct: 256 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPADERFAVYWRSERVGAVDWHV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRARIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   +  S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|148994421|ref|ZP_01823644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|168488368|ref|ZP_02712567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|147927257|gb|EDK78291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP9-BS68]
 gi|183573146|gb|EDT93674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae SP195]
 gi|332074492|gb|EGI84968.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17570]
          Length = 450

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 142/391 (36%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   +   D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A    T+ +F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EA----TVVAFSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRDVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|89895655|ref|YP_519142.1| hypothetical protein DSY2909 [Desulfitobacterium hafniense Y51]
 gi|122063244|sp|Q24TE4|MURD_DESHY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89335103|dbj|BAE84698.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 454

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 27/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +      +R ++ ++  + P HL     ++   +AKA IFE    +  
Sbjct: 159 IVAELSSFQLEWVD----SLRMNVGILLNVTPDHLDRHGTLDNYLAAKARIFEKQSPSDC 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN+DD+    L     A  +    +   ++    +  +            ++      
Sbjct: 215 AILNWDDARVRALAPHLKARVVFFSPTSLLAEGYGVRGDEVVLAEGG-----KITPIIAR 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N++  +  V  L    +   + L  F   E R               I
Sbjct: 270 GELQLRGSHNLENIMAAIAAVRELGLSWEEITQGLRDFKGVEHRQ---EVVGTYEGILFI 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP + + A+    +      G            G+       D  + +    + 
Sbjct: 327 NDSKGTNPDASEKALYAFEEPIVLIAG------------GKNKGLDFHDFMKTIKKQ-VK 373

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + L G     ++ A   +   +   + T         +    GDVV++
Sbjct: 374 SLVLVGTAAAEMEQAAKDTGIQNYLRAGTFAEAVELAIAEAEPGDVVLL 422


>gi|308389287|gb|ADO31607.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D- glutamyl-meso-
           diaminopimelate ligase [Neisseria meningitidis alpha710]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 116/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +         + TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHAGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            I     ++          LG M              A  +SL     V+    G     
Sbjct: 357 RIGGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHTKLLD 455


>gi|256545401|ref|ZP_05472764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256398962|gb|EEU12576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 436

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 120/358 (33%), Gaps = 33/358 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            RL      IAITG+ GKTTT  +++  L+   K    +G+          L +M  + +
Sbjct: 90  YRLFKDKKNIAITGTNGKTTTTSLISHILNQSGKKAIGVGNIGE-----GILWQMYKNDE 144

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L   +      +PHIA I  I P H+      E     K +I     ++ 
Sbjct: 145 IFVEEISSFQLHNTK----FFKPHIAGILNITPDHIDWHGSFENYIEDKLKIAINQNESD 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+DD     +K K+        +S  +       L+      +       L+    
Sbjct: 201 YLIINHDDEIL--MKNKNKFKAKIYEFSIKEEVQRGIYLKDDSLYLKDEKEIYLLKRDD- 257

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N+   +  + +   D+D  IK    F        R          + 
Sbjct: 258 ---LKIVGDHNLLNVSCAILCLYLFGLDLDEIIKYTKTFKAI---DHRLEFVKKIRNVSF 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S   AI+   +      G            G   +  +  L +  +   I
Sbjct: 312 YNDSKATNVDSAIKAINSFDKNVILIAG------------GYDKKIDYTPLFKN-TKKKI 358

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGF 457
             + L G     L++   +  I+ +    M          + D D V++  +S S G 
Sbjct: 359 KTMILMGQTKEILQNLCEKYKINYYLVNDMKEAVNKSFEIMKDFDTVLLSPASASWGM 416


>gi|212702355|ref|ZP_03310483.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
 gi|212674233|gb|EEB34716.1| hypothetical protein DESPIG_00368 [Desulfovibrio piger ATCC 29098]
          Length = 436

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 73/424 (17%), Positives = 118/424 (27%), Gaps = 86/424 (20%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFG-------VDDVL--GALNKLAVAARLRSKATIIAI 113
            GA LVV          S  +PV           D      L ++ +A R      ++A+
Sbjct: 76  AGAKLVV---------PSPGLPVVRLREMMGPHADAEGTEILAEMELAWRALDGEPVLAV 126

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHL 172
           TG+ GKTTT  +    L               +IG PL+   +     D  + E     L
Sbjct: 127 TGTSGKTTTVSLAAAMLREQGLRVFLG----GNIGTPLSEYLLSGEKADVLVLETSSFQL 182

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                      P +AV+  I+P HL     +EE   AK  +F    +     L       
Sbjct: 183 QCCS----TFHPRVAVVLNISPNHLDYHKDMEEYIEAKFRLFRCQTEEDLAVLA---PEL 235

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E   A+      K                                    E          
Sbjct: 236 EETAARFGLRARKVWIR-------------------------------PEGRFPDCPLFG 264

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N                T   A       +    R            +++S     A+
Sbjct: 265 QHNQFNAEAAWQACRPFGVTLENAARAVAAFKPLPNRLESVARVHGVLYVNDSKCTTVAA 324

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           ++ A+  +             + G   + G+L         + L       V L G    
Sbjct: 325 LEVALEAMDH-------PVHLLCGGKFKGGDLDG------MKDLLRRKAKSVNLYGASRE 371

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRL 460
             + A    + + + E M+   L +Q  + +GDVV++    SS             F R+
Sbjct: 372 IFEAAWQGVVPLCWHERMEDAVLALQDKVGEGDVVLLAPATSSFDQYRNYVERGNDFKRI 431

Query: 461 INLL 464
           +  L
Sbjct: 432 VGSL 435


>gi|146320316|ref|YP_001200027.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           suis 98HAH33]
 gi|253751317|ref|YP_003024458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|253753218|ref|YP_003026358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|253755041|ref|YP_003028181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|158514149|sp|A4VZT8|MURD_STRS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|145691122|gb|ABP91627.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           98HAH33]
 gi|251815606|emb|CAZ51192.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           SC84]
 gi|251817505|emb|CAZ55249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           BM407]
 gi|251819463|emb|CAR44977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus suis
           P1/7]
 gi|292557890|gb|ADE30891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptococcus suis
           GZ1]
          Length = 449

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  MV       IPV+        L  L       S   I+ ITGS GKTTT  M+   L
Sbjct: 85  DNPMVEKAIGKGIPVW----TEVELAYLV------SDVPIVGITGSNGKTTTTTMIAEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        +   + EL    L           PHIAV+
Sbjct: 135 NA----GKKPAKLCGNIGYPASSVAQTATAEDTLVMELSSFQLMGTE----SFHPHIAVV 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T +  +H+      E+  +AK  I   +     + +N++    + L  +        +  
Sbjct: 187 TNLIASHIDYHGTFEDYVAAKWMIQRQMTAEDFVVINFNQKEAKELAGQ---TKATVVPF 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +       L   K   +        +           G H  +N L T+ +  +L  D
Sbjct: 244 STQEVVDGAYLADGKLYFKG-------EYIMDADQIGVPGSHNVENALATIVVAKLLGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++LS F   + R    +        +  ++S + N  +          +S     
Sbjct: 297 QQAIQESLSAFGGVKHRL---QFVGEINGVSFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSE 428
           + I + G     G    +   +L   L    +  + + G     ++ A  ++ +    + 
Sbjct: 348 KVILIAG-----GLDRGNEFDELVPDLV--GLKKMVILGQSAPRVQRAADKAEVETIEAL 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +        +    GD+V++
Sbjct: 401 DIADATRKAFAIAEKGDIVLL 421


>gi|30248995|ref|NP_841065.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas europaea ATCC
           19718]
 gi|44888192|sp|Q82VS2|MURC_NITEU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|30138612|emb|CAD84903.1| murC; UDP-N-acetylmuramate--alanine ligase protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 473

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 145/420 (34%), Gaps = 36/420 (8%)

Query: 54  HDFILHAVQKGAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           H      +Q  A  VV++T    D    I +    +  V     A+  LA   RLR    
Sbjct: 55  HTHAAENIQS-ADAVVISTAIHSDNPEVIAARERRIPVVP---RAM-MLAELLRLRRG-- 107

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IAI G+ GKTTT  ++   L+   +    +          +         +F + E   
Sbjct: 108 -IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGKLKT---VDSHARLGKGEFIVVEADE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYD 228
           S           ++P + V+T I   H+S +            E  E L   G   L  D
Sbjct: 164 S-----DASFLYLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVLCVD 218

Query: 229 DSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D     + +            S      A        +    + + V    +++EV  + 
Sbjct: 219 DPHVREIISMITRPVTTYGIASEDAQICATNIRHDRCRMHFLAHIGVNGSPRTLEVTLNL 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + + + L    +  +KAL+ F   + R ++Y         +    +  
Sbjct: 279 PGKHNVLNALAAIAVGNELGVPDEAIVKALATFGGVDRRFQQYGEIPLPDQGSF---ALI 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
            +     A I+     + +    R  VL         ++    D   VLS  ++   + V
Sbjct: 336 DDYGHHPAEIAATMAAARNAFPGRRLVLAFQPHRYSRTRDLFEDFVRVLSGADVLLLTEV 395

Query: 405 WLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G   +   D+  L R+I V       Y E +D L   I +   DGDV+++  + S G
Sbjct: 396 YPAGEEPIIAADSKSLARAIRVQGKIEPIYIEQIDELKATIHTIAQDGDVILIMGAGSIG 455


>gi|299139506|ref|ZP_07032680.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298598434|gb|EFI54598.1| UDP-N-acetylmuramate/alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 458

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 133/414 (32%), Gaps = 50/414 (12%)

Query: 53  GHDFILHAVQKGAGLVVV-------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
           GH     A    A  VVV       +   V    +  IPV         +  LA   RL+
Sbjct: 56  GHT----AANAAASDVVVTSSAVAKDNPEVLEARARKIPVIQ----RAEM--LAELMRLK 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI G  GKTTT  M+   L+        +          +          + + 
Sbjct: 106 YG---IAIAGMHGKTTTTSMVAAVLAGGALDPTVVVGGRVD---AMGSNARLGRSQYLVA 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S           + P +AV+T +   H+  ++ + ++     E  + +   G I  
Sbjct: 160 EADES-----DRSFLKLSPILAVVTNLDREHMDTYADLADVERVFVEFMDRVPFYGAITA 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR--KWKQCSEQSWMEVQLQGKSMEV 283
             D+     +  +      + IY++G+S +ADF+LR  +       ++            
Sbjct: 215 CVDNEMLRAILPRV----TRRIYTYGESPDADFRLRVLRPAPDCHATFEVNTRGLVLGPF 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
             H  G H   N    + I   L    +     L+ F   + R +             + 
Sbjct: 271 NLHVPGRHNLLNATAAVAIGVQLGIPPEKIAAGLASFRGVDRRFQT----KGVQNGVTVV 326

Query: 344 ESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + Y  +P  ++A +    +           PH   R   +L D       + S  +    
Sbjct: 327 DDYGHHPTEIRATLQAARECGYGRVLVLFQPHRYTRTRDLLEDFTTAFGDADSLQVLDIY 386

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             S   I  V  SG  +     A    I V Y+ +M+     +      GD+V+
Sbjct: 387 AASEQPIPGV--SGESLAEKIRAASGGI-VAYAGSMEEAVERLARDARPGDLVL 437


>gi|289579389|ref|YP_003478016.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
 gi|289529102|gb|ADD03454.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter italicus
           Ab9]
          Length = 464

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/403 (16%), Positives = 134/403 (33%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP     D    L  +    +       IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKYKYG-----IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++                      +       + ++ + E       E   
Sbjct: 119 GKTTTTSLISVIFD---GMGYDPTVLVGGEVDVIGGNVRVGNSEYFVTEAC-----EYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDGYVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +  +   +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYEDSDWKAKNIRFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  A+L +  E  + +      +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADKI--IIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  +   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVL 440


>gi|119944901|ref|YP_942581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
 gi|119863505|gb|ABM02982.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Psychromonas
           ingrahamii 37]
          Length = 445

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 64/390 (16%), Positives = 119/390 (30%), Gaps = 50/390 (12%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           D+     +L+  A     A ++ I+GS GK+T   +L     + K       +   +IG+
Sbjct: 92  DIELFARELSKPAYA--HAKLVTISGSNGKSTVTSLLGEMAVAAKIKV----AVGGNIGI 145

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P     +  ++D  I EL    L      T  +   IA +  I+  H+  +    +  +A
Sbjct: 146 PALDL-LSPEIDLYILELSSFQL----ETTFSLNADIATLLNISEDHMDRYDSYAQYTAA 200

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +++  +       +                      SFG  K A   +       +Q
Sbjct: 201 KHRLYQQCKMALYNRDDKLT---------YPKNHSLNKTSFGFDKLAYGLVTDAD---KQ 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            ++                G H   N L    +   +         AL  +     R   
Sbjct: 249 IFLAKNGSPILAAKQLKLSGKHNWMNTLAAFALGEAVGLSEIGMFTALQAYSGLPHRC-- 306

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  +     + L  +S    G    +LG   +  + S    
Sbjct: 307 -EFVAEINNVRWINDSKATNIGAA---QAALLGLSETIPGNVHVILGGDGKGADFS---- 358

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +LA VL       +   G     +     +       E ++     I ++   GD+V++
Sbjct: 359 -ELALVLKEIQ-GMIVCFGVDGKKIA---AQHKRALLVENLEQAVENIFTTAQAGDLVIL 413

Query: 450 ---KSS---------NSCGFYRLINLLLEE 467
               +S             F RL+  L   
Sbjct: 414 SPACASLDMYKNFMQRGDHFKRLVKALPAR 443


>gi|83858914|ref|ZP_00952436.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853737|gb|EAP91589.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicaulis alexandrii
           HTCC2633]
          Length = 467

 Score = 59.5 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 77/416 (18%), Positives = 136/416 (32%), Gaps = 38/416 (9%)

Query: 47  KGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           KG        I HA +   GAG +VV++ +      L         V+     LA   RL
Sbjct: 54  KGAVVH----IGHAAENVEGAGALVVSSAVKKDNPELVAARAKRTPVVRRAEMLAELMRL 109

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     +A+ G+ GKTTT  ++   + +           N  I           + ++ +
Sbjct: 110 KHA---VAVAGTHGKTTTTSLVACLMDAAGFD---PTVINGGIISAYGSNAKIGEGEWMV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S           +R  + +IT I P H+ ++   + +  A A+  E L   G   
Sbjct: 164 VEADES-----DGSFLKLRGSVGIITNIDPEHMEHYGSFDALRDAFAQFVENLPFYGFAV 218

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK----- 279
           L  D    + L A+        + ++G S  AD +L            ++  Q +     
Sbjct: 219 LCIDHPEVQALAARIEDR---RVITYGFSPQADVRLSNLVMDETGGHFDLTFQPRGIEPV 275

Query: 280 -SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H   N    L +V  L    + A  ALS F   + R         Q  
Sbjct: 276 TWAGMSLPMMGEHNVLNAAGALAVVQALGGGEEEARTALSGFTGVKRRFT----ITGQAH 331

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  + A +    Q           V                        
Sbjct: 332 GVTVVDDYGHHPVEITAVLKAARQ-RVGAGRVHAVVQPHRYSRLHDLFEDFCTCFNDADS 390

Query: 399 YNISHVWLSGFHV------LALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVV 447
             ++ V+ +G          +L   L R  H +  + T + L   ++S +  GD++
Sbjct: 391 VWVTPVYAAGEAPIEGASQDSLVAGLQRHGHRNPNATTRETLPDDLKSVMQPGDLI 446


>gi|332799092|ref|YP_004460591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
 gi|332696827|gb|AEE91284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tepidanaerobacter
           sp. Re1]
          Length = 468

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 73/380 (19%), Positives = 129/380 (33%), Gaps = 42/380 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
           +++      +IP+        +  +L       +KA IIA+TG+ GKTTT  ++   L +
Sbjct: 99  EILKEAKKRNIPII-------SELELGYWF---AKAPIIAVTGTNGKTTTTTLIGEILKN 148

Query: 133 IKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +K          +IG+P +       D D+ + E+    L          RP I+VI  
Sbjct: 149 GEKNI----ILAGNIGIPLIREVEKAEDKDYLVVEVSSFQL----ENIMHFRPKISVILN 200

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   HL+     E+   AKA I E   +     LNYDD        K+    +       
Sbjct: 201 ITKDHLNRHKTFEKYIEAKARILENQIEGDYTVLNYDDPIVRTFAKKAKPKVLFFSRKEE 260

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             + A  +              V              G H  +N L    +  I   +++
Sbjct: 261 LERGAYVKNGVIVIRDNGKIYPVLK-----AEELGIKGSHNLENALAAACVAWITRINLN 315

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              + +  F   E R        N      I++S   NP + + AI  L +      G  
Sbjct: 316 NMAETMKDFRGVEHRL---EFVANIDGIKFINDSKATNPDAAQKAIEALEEPIVLIAG-- 370

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSET 429
                     G   +S + D  +      +  + L G     ++D   +     +  + +
Sbjct: 371 ----------GYDKKSDYSDFIKTF-KGKVKKLILIGDTASIIEDTAIKHGFFDIEKANS 419

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +        ++   GDVV++
Sbjct: 420 LQDAVKSAYNAAAAGDVVLL 439


>gi|254428710|ref|ZP_05042417.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
 gi|196194879|gb|EDX89838.1| UDP-N-acetylmuramate--alanine ligase [Alcanivorax sp. DG881]
          Length = 474

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 144/415 (34%), Gaps = 39/415 (9%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAAR 103
           G   D GH      +  GA +VV +T +      ++        V  V  A   LA   R
Sbjct: 61  GVRVDIGHR--ASNID-GADVVVTSTAVNTENLEVAAAHERRIPV--VPRA-QMLAELMR 114

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            R     IA+ G+ GKTTT  +    ++        +     +               + 
Sbjct: 115 FRHG---IAVAGTHGKTTTTSLTAAIMAEAGLDPTFVIGGRLNS---AGTNARLGQSRYL 168

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGT 222
           + E   S    +      ++P  A++T I   H+  +     ++ +   E    L   G 
Sbjct: 169 VAEADESDASFLH-----LQPMSAIVTNIDADHMHTYGGDFAQLENTFIEFLHNLPFYGV 223

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD     L  + +   I+  +S      A+   +         +  V+ +G+ +E
Sbjct: 224 AVMCVDDPVVRKLLPRVNRQVIRYGFSEDADLRAENVRQDGMVTH---FRVVRAEGEPLE 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H   N L  + + +   AD +  I+ L+ F     R         +G    +
Sbjct: 281 VSLNMPGRHNVLNALAAIAVSADEGADDEAIIRGLNNFTGVGRRFDVQGEYHFEGGSATL 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  +P  + A I  + +  P      +            +Q  + D  EVLS  ++ 
Sbjct: 341 VDDYGHHPREVAATIDAIREGWPERRLAMLF----QPHRYTRTQDLYEDFVEVLSGVDVL 396

Query: 403 ---HVWLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               V+ +G          AL  +L  R +   + +  D L   + S L DGD++
Sbjct: 397 LMLEVYAAGEDPIPGADARALCRSLRKRGLEPVFVDDPDKLAGLLASQLQDGDLL 451


>gi|33603175|ref|NP_890735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           bronchiseptica RB50]
 gi|62900580|sp|Q7WFS0|MURD_BORBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33568806|emb|CAE34564.1| putative peptidoglycan synthesis protein [Bordetella bronchiseptica
           RB50]
          Length = 510

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 39/377 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA +     +  ++AITG+ GKTT   +    + +   +    G+ +      L 
Sbjct: 118 RALAGLAES--REYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALI 175

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A    D     + EL    L      T  + P  AV+  +   HL     ++  A AKA
Sbjct: 176 DALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKA 231

Query: 212 EIFE----GLEKTGTIFLNYDDSFFELLKAKSHALGIKT--------------IYSFGKS 253
            I +     +               + L  +S    +                  +  +S
Sbjct: 232 RILKPARLAIVNRDDPLTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACES 291

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            + D      ++  +           S  +    +      N L  L  + +  +     
Sbjct: 292 NDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGW 351

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L       G   R     + G    I++S   N  +  AA+  L         + + 
Sbjct: 352 GPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGL-------GQQVVL 404

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           + G   +  + S          +   +   V L G    A+   L P  +    +  M  
Sbjct: 405 IAGGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCVAAADMRE 458

Query: 433 LFLFIQSSLVDGDVVVV 449
                      GD V++
Sbjct: 459 AVRRAAELAQPGDAVLL 475


>gi|195941718|ref|ZP_03087100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi 80a]
          Length = 451

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKSIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|148269826|ref|YP_001244286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
 gi|166224768|sp|A5IKI7|MURD_THEP1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|147735370|gb|ABQ46710.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           petrophila RKU-1]
          Length = 430

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 100/366 (27%), Gaps = 57/366 (15%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   LS              + G P  +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMHHVLSE----RGFKSFLGGNFGTP-AVEALEGEYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L               ++  I+  HL   S  EE   +K +      +      N
Sbjct: 156 MSSFQLFWSERPYL----SNFLVLNISEDHLDWHSSFEEYVDSKLKPVFLQTEGDLFVYN 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 + L+          + S       D      K+   +            ++   
Sbjct: 212 KHIERLKDLEG---------VRSRKIPFWTDENFATEKELIVRGKRYTLPGNYPYQMR-- 260

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                        L +  +     +     L +    +    R             ++S 
Sbjct: 261 ----------ENVLAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDSK 310

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +  ++  A+S   +           V+  MC +G   +  +  L    +   + H+ +
Sbjct: 311 ATSTHAVLGALSNFDK-----------VVLIMCGIG---KKENYSLFVEKASPKLKHLIM 356

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
            G     L       I     E M+  F         GDV+++    +S           
Sbjct: 357 FGEISKELAP-FVGKIPHSIVENMEEAFEKAMEVSEKGDVILLSPGGASFDMYENYAKRG 415

Query: 455 CGFYRL 460
             F  +
Sbjct: 416 EHFREI 421


>gi|222053879|ref|YP_002536241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
 gi|254766051|sp|B9M170|MURD_GEOSF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221563168|gb|ACM19140.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter sp.
           FRC-32]
          Length = 453

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 83/292 (28%), Gaps = 26/292 (8%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            DV   + EL    L          RP +AV+  I   HL  ++  ++   AK  IFE  
Sbjct: 155 NDVAQVVVELSSFQL----EGIQRFRPKVAVLLNITEDHLDRYASYQDYIDAKLRIFENQ 210

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  LN DD       A   +           ++             + S +     
Sbjct: 211 TVDDFAVLNVDDPLVAACAATVKSRVFPFSQRKELAEGIFCSKGIIVYRWQGSELRFD-- 268

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                            N+   +  ++         IKA       +G   R       G
Sbjct: 269 -------TAAFKLKGVHNIENIMAALASTLLSGADPIKAGRAVESFKGLRHRMEFIREVG 321

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   N  S+  ++    +      G            G+     +  LA+++ 
Sbjct: 322 GVAYYEDSKGTNVGSVVKSLESFDKGITLIAG------------GKDKGGSYAPLADLVR 369

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + H+ L G     ++  L      H + T++            G+VV+ 
Sbjct: 370 ER-VKHLILIGEAKERIEAELGNLTDTHKAATLEDAVAIAHRLAKAGEVVLF 420


>gi|91786994|ref|YP_547946.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
 gi|91696219|gb|ABE43048.1| UDP-N-acetylmuramate [Polaromonas sp. JS666]
          Length = 475

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 118/366 (32%), Gaps = 16/366 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT  L          G     + +   ++    + +  + E   
Sbjct: 121 VLAVAGTHGKTTTTAMLTWILEQAGLQ---PGFLVGGVPLNFGVSARLGEGNTFVIEADE 177

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  + +I      +   +   G I +N 
Sbjct: 178 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLADIERQFQHLVRTVPSQGRIVVNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +     + A+          +   +++      +        +  ++       V    
Sbjct: 238 GEESLRRVLAQGCWSEQVLFGNSPLNQSGFTAQGEP-----NDFKVLKAGQAVAHVQWGI 292

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +    + A +AL+ F   + R +        G    + + + 
Sbjct: 293 SGVHNQLNALAAIAAAEHVGVPPEVAARALAEFQNVKRRMEVRGVVHAHGGDITVYDDFA 352

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++   +  L +           +L  + E    +       A++   L   +++  
Sbjct: 353 HHPTAIHTTVDGLRRQLKGAGKDGDRILA-IFEPRSNTMKLGSMTAQLPWSLEQADLAFC 411

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    A    +P       ++ +D L   +++S   GD  ++  SN  GF  +   L
Sbjct: 412 HAGGLDWDARAALMPMGARAQVADNIDQLVAQVKASARPGDH-LLCMSNG-GFGGIHARL 469

Query: 465 LEEFPA 470
           LE    
Sbjct: 470 LEALKP 475


>gi|302389514|ref|YP_003825335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200142|gb|ADL07712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Thermosediminibacter oceani DSM 16646]
          Length = 452

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 116/346 (33%), Gaps = 32/346 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           KA IIAITG+ GKTTT  ++   L +  K      S   +IG PL          D+ + 
Sbjct: 107 KAPIIAITGTNGKTTTTTLIGEILKNDGKNI----SVAGNIGTPLIQEADKNGSKDYIVV 162

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L          +P I+VI  I   HL+     E    AKA I E  ++     L
Sbjct: 163 EVSSFQL----ENIVRFKPKISVILNITEDHLNRHKTFENYIEAKARILENQDEEDFTVL 218

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           NYDD     L+ ++ +  +         +    +          +   +           
Sbjct: 219 NYDDPIVASLEKRARSKIVFFSRKQELQEGVYVKNDVIVIRENGNIYPILK-----AKEL 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N L  + +  I  A+++   + L  FH  E R               I++S
Sbjct: 274 GIKGSHNLENALAAVAVAWITKANLNNLAETLKDFHGVEHRL---EYVDTIDGVKFINDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP + + A+  +        G  I + G     G   +              +  V 
Sbjct: 331 KGTNPDAAQKALEAVD-------GPIILIAG-----GYDKKVDFRPFVRSFF-GKVKKVV 377

Query: 406 LSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++          V  + +M       + S   GD V++
Sbjct: 378 LIGATADQIERTAREEGFFEVEKAASMREAVEIAKRSAEPGDTVLL 423


>gi|83746792|ref|ZP_00943840.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
 gi|83726561|gb|EAP73691.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia solanacearum UW551]
          Length = 501

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 106/364 (29%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 145 VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGLSARLTASDFFVIEA 199

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 200 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRAVPGQGRVLV 259

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+     ++    FG    A + +       + S+  V        V  
Sbjct: 260 NGREESLKRVLARGCWSEVEL---FGAEDGAGWAIAN--LGDDDSFDVVLDGQVQGRVRW 314

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 315 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGVTVYDDFAHH 374

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 375 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASGRD 434

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 435 VL-----GWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLV-MSNG-GFGGVHQ 487

Query: 463 LLLE 466
            LL+
Sbjct: 488 KLLD 491


>gi|325202111|gb|ADY97565.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           M01-240149]
 gi|325208135|gb|ADZ03587.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis NZ-05/33]
          Length = 458

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 117/416 (28%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP   V+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +   + TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHVGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A  +SL     V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWNV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L 
Sbjct: 405 AEALAPLGGRLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLDALR 458


>gi|154174300|ref|YP_001408218.1| Mur ligase family protein [Campylobacter curvus 525.92]
 gi|112802478|gb|EAT99822.1| Mur ligase family protein [Campylobacter curvus 525.92]
          Length = 475

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 113/345 (32%), Gaps = 34/345 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LARMPVDVDFGI 164
           S   +I IT S GKT+ K  L   L      +    S N   G+       +       I
Sbjct: 156 SNLKVILITASYGKTSIKNFLYELLKDEFNCHKTPRSVNTLAGLMKDVNENLTQQTQIYI 215

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E G    G+I+ +T  + PHI ++  I   H+  F  IE I + K              
Sbjct: 216 AEAGARLKGDIKEITDFLNPHIVIVGEIGAQHIEYFKSIENIRATK-------------- 261

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                   E L +K          +   + +         +     +  ++         
Sbjct: 262 -------LEALHSKHLEQAFVHSSTLKSADDKTQIYNAGLKDVSADFDGIKFSLDGEIYT 314

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G   A N+   + +   L    +   K+L      E R ++ +         +ID+
Sbjct: 315 SPLLGKFNAANLAACIKVAKFLGLSDENIKKSLQRLQNVEHRLQKMQAGGK----LIIDD 370

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S+N N   M A+      +    +GR++ +   + E    +Q+ + +L ++++      V
Sbjct: 371 SFNGNFVGMSASYE----LIGTYKGRKVLITPGIVE---STQAENENLGKIINEI-FDVV 422

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +S                +   +    +   +      GDV++ 
Sbjct: 423 MISSPLNAQALLKTIVKPEIIIIKDKTKMQEILAKHTRAGDVILF 467


>gi|168482914|ref|ZP_02707866.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043724|gb|EDT51770.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae CDC1873-00]
          Length = 450

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 133/381 (34%), Gaps = 46/381 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  M+    +  IPV         L  L   A       II ITGS GKTTT  M+   L
Sbjct: 85  SNPMIEKALAKGIPVL----TEVELAYLISEAL------IIGITGSNGKTTTTTMIGEVL 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++  +     G  + +IG P +   ++  D D  + EL    L  ++       P IAVI
Sbjct: 135 TAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELSSFQLMGVQEFH----PEIAVI 186

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T + P H+       E  +AK  I   +     + LN++    + L +K+ A  +     
Sbjct: 187 TNLMPTHIDYHGAFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLASKTEATVVP---- 242

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           F   +  D          E   +  + +           G H  +N L T+ +  +   D
Sbjct: 243 FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALATIAVAKLRGVD 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T  + LS F   + R    +   +       ++S + N  +          +S     
Sbjct: 297 NQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------TQKALSGFDNS 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SE 428
           + + + G     G    +   +L   +    +  + + G     +K A  ++   +  + 
Sbjct: 348 KVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAADKAGVAYVEAT 400

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
            +             GDVV++
Sbjct: 401 DIADATRKAYELATQGDVVLL 421


>gi|119897159|ref|YP_932372.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Azoarcus sp. BH72]
 gi|119669572|emb|CAL93485.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Azoarcus sp. BH72]
          Length = 448

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 134/417 (32%), Gaps = 46/417 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G         ++ +I    +P             LA          ++A+ G+
Sbjct: 67  IGNAISRG-------NPLLEAILDRGLPYVSGP------QWLAEHVLA--GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +L   L     +    G     +     ++    D  F + E          
Sbjct: 112 HGKTTTTSLLAWMLEDAGLS---PGFLVGGVPKNFGVSARLTDSPFFVIEADEYDTAFCD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP  A++  +   H   F+ +  I +    +   L + G I  N  +   + 
Sbjct: 169 KRSKFVHYRPRTAILNNLEFDHADIFADLAAIETQFHHLVRTLPRQGRIVANAREDALKR 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           + A+         +S  +  N   Q        +   +      +   V     G H  +
Sbjct: 229 VLARGC-------WSELEWFNDAAQWSAAAGARDAEAVFRLGDEELGRVEMPLAGSHNRE 281

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +     +      AI +L+ F   + R +       +     + + +  +P ++ 
Sbjct: 282 NALAAIAAARHVGVPPQQAIASLARFEGIKRRLE----LRGRARGVAVYDDFAHHPTAIA 337

Query: 355 AAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GF 409
             +  L       EGR +AVL    +  ++G +       LA+         V+    G 
Sbjct: 338 LTVEGLR--RREPEGRILAVLEPRSNTMKLGVMKAQLPGSLAQ------ADAVFCYAGGL 389

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              A     P        E +  L   + ++   GD V+V  SN  GF  +   LL+
Sbjct: 390 GWDAAAALAPLGERAQVHEDLGALVQAVAATARPGDHVLV-MSNG-GFGGVHQKLLD 444


>gi|300703024|ref|YP_003744626.1| UDP-N-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
 gi|299070687|emb|CBJ41982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           CFBP2957]
          Length = 471

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 105/364 (28%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 115 VLAVAGTHGKTTTTSMLAWILQDAGYEP-----GFLVGGVPRNFGLSARLTASDFFVIEA 169

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 170 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRVLV 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+     ++    FG      + +       + S+  V        V  
Sbjct: 230 NGREESLKRVLARGCWSEVEL---FGAEDGTGWAIAN--LGDDDSFDVVLDGQVQGRVRW 284

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 285 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGVTVYDDFAHH 344

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 345 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASGRD 404

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 405 AL-----GWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLV-MSNG-GFGGVHQ 457

Query: 463 LLLE 466
            LL+
Sbjct: 458 KLLD 461


>gi|167618637|ref|ZP_02387268.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis Bt4]
 gi|257137883|ref|ZP_05586145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia thailandensis E264]
          Length = 504

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 121/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 139 VLAVAGTHGKTTTSSMLAWILEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 195

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G +  N 
Sbjct: 196 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPSVGRLVTNG 255

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            +   E + ++     ++    FG          +    +++ +       +   V  H 
Sbjct: 256 REDALERVLSRGCWSDVER---FGVDGGWQALPAEDGVPADERFAVYWRSERVGAVDWHV 312

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  AL+ F   + R +             + + + 
Sbjct: 313 QGEHNRMNALAAIAAARHVGVPPAQAATALATFRNVKRRME----VRGSVDGVTVYDDFA 368

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 369 HHPTAIETTIAGLRARIGRENTRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 422

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L DAL          + +  L   +  S   GD V+V  SN  GF
Sbjct: 423 FGYGAPSGRDALGWSLPDALAPLGDKARAFDDLHALVKAVTVSARPGDHVLV-MSNG-GF 480

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 481 GGVHQKLLDALSA 493


>gi|121727433|ref|ZP_01680561.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|147675374|ref|YP_001218037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|262167568|ref|ZP_06035273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
 gi|121630205|gb|EAX62605.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V52]
 gi|146317257|gb|ABQ21796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O395]
 gi|227014431|gb|ACP10641.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae O395]
 gi|262024021|gb|EEY42717.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC27]
          Length = 451

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V  +G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLFKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       +   A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVSPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|194290812|ref|YP_002006719.1| udp-N-acetylmuramate--l-alanine ligase [Cupriavidus taiwanensis LMG
           19424]
 gi|229486486|sp|B3R6V8|MURC_CUPTR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|193224647|emb|CAQ70658.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Cupriavidus taiwanensis LMG 19424]
          Length = 474

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 88/417 (21%), Positives = 140/417 (33%), Gaps = 45/417 (10%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLR 105
            GHD    A   GA  VVV+T +      +       IPV         +  LA   RL+
Sbjct: 55  HGHD---AANVSGANAVVVSTAVSGDNPEVLAARSQRIPVV----PRAVM--LAELMRLK 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L+        +     +       AR+    DF + 
Sbjct: 106 QG---VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVA 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIF 224
           E   S           + P I VIT I   H+  +            E  + L   G   
Sbjct: 160 EADES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           L  DD     +        ++  ++   + +  D +    +                +E+
Sbjct: 215 LCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVLRQLNGHTEPPLEI 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF--FTL 341
           V +  G H  QN L  + I + L       +KAL  FH    R +RY             
Sbjct: 275 VLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGAGTFT 334

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SL 398
           + + Y  +P  M A ++      P        VL         ++    D  +VL     
Sbjct: 335 LVDDYGHHPVEMAATLAAARGAFPER----RLVLAFQPHRFTRTRDCFEDFVKVLGTVDA 390

Query: 399 YNISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
             +S V+ +G          AL  AL  +  V   + E M+ +   I +++  GDVV
Sbjct: 391 LLLSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILNAVRPGDVV 447


>gi|238791171|ref|ZP_04634810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
 gi|238729304|gb|EEQ20819.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           intermedia ATCC 29909]
          Length = 438

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALTL-LRQENQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LVVLELSSFQL----ETTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRF---QLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  +       EG    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGIQV-----EGTLHLLLGGDGKSADFS-----GLTRFLQGDH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L +  P    +   ETM+   + +  SL  GD+V++    +S     
Sbjct: 365 I-KVYCFGRDGEQLAELRPEVSQLT--ETMEQAMVLLAKSLAPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|54297666|ref|YP_124035.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
 gi|53751451|emb|CAH12869.1| hypothetical protein lpp1717 [Legionella pneumophila str. Paris]
          Length = 455

 Score = 59.1 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 127/375 (33%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 95  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 149

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 150 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G+++     +          +  
Sbjct: 210 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGEAEWVAELIDDS----GSQFKI 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G   EV    IG    +N L  +        +   A KAL  F P + R +     
Sbjct: 266 LHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE----V 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +   
Sbjct: 322 RSNRHGVTVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAG 375

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +   +      +    +   I  ++ +GD V+V  
Sbjct: 376 EMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGDAVLV-M 434

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 435 SNR-GFNGIHQQLID 448


>gi|253580162|ref|ZP_04857429.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848681|gb|EES76644.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/307 (16%), Positives = 99/307 (32%), Gaps = 28/307 (9%)

Query: 146 HIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T   + +      + E+    L  I        P ++ I  I   HL+    +E
Sbjct: 143 NIGTPYTSKALEMKPNSITVAEISSFQLETIDEFA----PKVSAILNITEDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  I E         LNY+D          H       +S G+  +    L   K
Sbjct: 199 EYIRVKELITENQGTEDVCVLNYEDEVLREFGK--HLTPRVVYFSSGRKLDEGIYLDGNK 256

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +    E+++           +G H  +N++  + +       +D+  K++  F    
Sbjct: 257 IILKDGEKEIEV---VKTEDLKLLGKHNFENVMAAVAMAYYDGVSLDSIRKSICEFTAVA 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R         +      ++S   NP +    I  +++ +    G            G  
Sbjct: 314 HRI---EYVTEKKGVVYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYD 358

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV 442
            QS + +  E      + ++ L G     +K+A  +     +   E +       +    
Sbjct: 359 KQSGYDEWIE-AFDGKVRYLVLIGQTKEKIKEAAEKHGFHDIILCEDLKEAVKVCEEKAQ 417

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 418 PGDAVLL 424


>gi|52425721|ref|YP_088858.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia
           succiniciproducens MBEL55E]
 gi|59798187|sp|Q65RY7|MURC_MANSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52307773|gb|AAU38273.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 480

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/399 (17%), Positives = 137/399 (34%), Gaps = 36/399 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VVV++ + A    +         V+     LA   R R     IA+ G+ GKTTT  
Sbjct: 82  ASVVVVSSAIKADNVEVVAAHEKRIPVIQRAQMLAEIMRFRHG---IAVAGTHGKTTTTA 138

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+++  +        +                  +   G     ++   E       ++P
Sbjct: 139 MISMIYAQAGLDPTFVNGGLVK--------SAGTNAHLGCSRYLIAEADESDASFLHLQP 190

Query: 185 HIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            ++V+T I P H+       +E+          L   G   +  DD     L  +     
Sbjct: 191 MVSVVTNIEPDHMDTYHGDFDEMKRTYVNFLHNLPFYGLSVMCADDPVLLELIPQVGRPV 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           I    ++G S+ AD+++  ++Q   +  +  +   G+ ++V+ +  G H A N    L +
Sbjct: 251 I----TYGFSEEADYRIENYEQTGFQGHYSVITPAGERIDVLLNVPGKHNALNATAALAV 306

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 + +  + AL+ F     R  +    +      ++ + Y  +P  +   I     
Sbjct: 307 AKEEGIENEAILAALADFQGAGRRFDQLGSFIRPNGKVMLVDDYGHHPTEVNVTIQA--- 363

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFHV 411
            +  G   +  V+         ++    D   VLS   +  +            ++G   
Sbjct: 364 -ARKGWENKRIVMIFQPHRYSRTRDLFDDFVRVLSQ--VDLLIMLDVYPAGESPIAGADS 420

Query: 412 LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            +L  ++     V          L   +   L DGD+V+
Sbjct: 421 RSLCRSIRNLGQVDPILVTDTAELPEIMDRVLQDGDLVL 459


>gi|332704500|ref|ZP_08424588.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554649|gb|EGJ51693.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 454

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 122/384 (31%), Gaps = 34/384 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V     L IPV         +  LA   RLR+    IA+ G+ GKTTT  +L    ++
Sbjct: 79  PEVQEARRLGIPVI----PRAEM--LAELMRLRTG---IAVAGTHGKTTTTSLLAEIFTA 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I     +            + ++ I E   S          ++ P I ++T +
Sbjct: 130 AGLDPTVIIGGRLNS---WGANAYLGEGEYLIAEADES-----DGSFLVLAPIITIVTNV 181

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL  +   + I  A  E    +   G   +  DD   E +         + I ++G 
Sbjct: 182 DADHLDFYPDQQAIDRAFTEFMNKVPFYGVNVVCGDDPGVERILP----GIRRRIMTYGL 237

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                 +           +     +    +VV +  G H   N +  +G+        + 
Sbjct: 238 RPGNRIRGEITSCQERCIFKLYVDEEYWADVVLNKPGRHNVLNSMAAIGVALEAGLPKEA 297

Query: 313 AIKALSVFHPKEGRGKRYRCAL------NQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            ++ L  F     R +            + G       +  A          ++    PH
Sbjct: 298 ILQGLERFGGVGRRFEIKGEKGGILVVDDYGHHPAEIGATLATAKDCYPERRLVVAFQPH 357

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHV 424
              R  A+ GD C++ +++    +      S   I      G   L+L   + +   + V
Sbjct: 358 RFTRTKALFGDFCKVFDVADVLLLTEIYAASEAPI-----PGVSGLSLAQGIRQVGKVDV 412

Query: 425 HYSETMDGLFLFIQSSLVDGDVVV 448
            +    + +   +   L  GDV++
Sbjct: 413 SFFPNFEEMEAALPGLLRPGDVLL 436


>gi|229006196|ref|ZP_04163882.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
 gi|228755037|gb|EEM04396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock1-4]
          Length = 450

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 114/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTTLTFEMLKE---GQKHPVIAGNIGTVACEVAQAAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----TFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L A S    +    +         ++ +   C +   +  + +     
Sbjct: 220 SVINADDVDVMALSANSKGQKVLFSAT---------KVIEDGACIKDGALYFKGEKIVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L  + +  I  L  F   + R                
Sbjct: 271 QDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPVILLAG------------GLDRGNEFDDLIPYF--EHVK 373

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L  A  ++    +   + ++       S   DGDV+++
Sbjct: 374 AILTYGQTAPKLVRAAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|227082660|ref|YP_002811211.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|298500631|ref|ZP_07010435.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
 gi|227010548|gb|ACP06760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae M66-2]
 gi|297540800|gb|EFH76857.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MAK 757]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|318042232|ref|ZP_07974188.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0101]
          Length = 462

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/399 (15%), Positives = 111/399 (27%), Gaps = 51/399 (12%)

Query: 91  VLGAL--------NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            L AL         ++  A    +    I ITG+ GKTT   ++   L          G+
Sbjct: 90  TLKALRQQGIRTDGEITTAWEASAGVPWIGITGTNGKTTVTHLIAHLLEQAGLDAPMCGN 149

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
                              + + EL    +         + P I V TT+ P HL     
Sbjct: 150 VGFSAAELALARSGANAPTWLVVELSSYQI----ESAPALAPRIGVWTTLTPDHLERHGT 205

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           ++   + K  + E                   L++++ +       +    + A     +
Sbjct: 206 LDNYRAIKRSLLEHSTVRVLNA------DDPDLRSRAASWDQARWVTAESREQARAAGIE 259

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                E + +                G H  QNMLM + +   +    +    AL  F  
Sbjct: 260 PHLWIEANQVCQASGPLLPADALAMPGAHNRQNMLMAVAVGLEVGLSAEQMAAALRCFPG 319

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              R         +      ++S   N  + + A+  L        G  + + G   + G
Sbjct: 320 VPHR---LELIRERDGVRWFNDSKATNYDAAEVALRALQ-------GPLVVLAGGEAKQG 369

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
           E +                  V L G        L +A   S  VH    +       Q 
Sbjct: 370 EAAGWL------AGLEREARAVVLFGAARDTFQQLLEASHYSGAVHRVAGLSEAVPLAQR 423

Query: 440 SLVDGD--VVVV---KSS---------NSCGFYRLINLL 464
              + +   V++    +S             F +L+  L
Sbjct: 424 LAAEQNCRAVLLSPACASFDQYRDFEARGDHFRQLVQSL 462


>gi|226328326|ref|ZP_03803844.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
 gi|225203059|gb|EEG85413.1| hypothetical protein PROPEN_02220 [Proteus penneri ATCC 35198]
          Length = 487

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/413 (18%), Positives = 145/413 (35%), Gaps = 49/413 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VVV+T + A    +       IPV        A   LA   R R     +AI G+
Sbjct: 77  RGASVVVVSTAISAENPEIIAAREARIPVI-----RRA-EMLAELMRYRHG---VAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M++   +        +           T AR+     + I E   S    + 
Sbjct: 128 HGKTTTTAMISNIYAQAGLDPTFVNGGLVKS--AGTHARLGCS-RYLIAEADESDASFLH 184

Query: 177 FLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   H+       + +          L   G   +  DD     +
Sbjct: 185 -----LQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAVMCLDDDVIRSI 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             K      + I ++G S++AD ++  ++Q   +  +   +     ++VV +  G H A 
Sbjct: 240 IPKV----GRYITTYGFSEDADVRITHYEQKGAQGFFTISREGMPDLQVVLNAPGRHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNAN 349
           N    + + +      +  + AL  F     R              Q    ++ + Y  +
Sbjct: 296 NATAAVAVATEEGIADEHILAALLSFQGTGRRFDFLGNYGLEHVNGQEGEVMLVDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWL 406
           P  + A I       P        V+         ++  + D A VL+  +I   + V+ 
Sbjct: 356 PTEVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYEDFATVLNQVDILLLTDVYS 411

Query: 407 SGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +G          +L   + +   +   +   +  +   +   L D D+V+V+ 
Sbjct: 412 AGEAPIAGADSRSLCRTIRQRGKLDPIWVSDVSNISSILAGVLTDNDLVLVQG 464


>gi|218249929|ref|YP_002375093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226321891|ref|ZP_03797417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
 gi|226711886|sp|B7J2E8|MURD_BORBZ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218165117|gb|ACK75178.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi ZS7]
 gi|226233080|gb|EEH31833.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi Bol26]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNGNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILSNFKGIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|312149280|gb|ADQ29351.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi N40]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 125/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKSIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + + + L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIINILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|255322234|ref|ZP_05363380.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
 gi|255300607|gb|EET79878.1| Mur ligase middle domain protein [Campylobacter showae RM3277]
          Length = 478

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/360 (19%), Positives = 121/360 (33%), Gaps = 37/360 (10%)

Query: 93  GALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
            A    A        +  II IT S GKT+ K  L   L +         S N   G+  
Sbjct: 145 KAYENSARKKLASMPELKIIMITASFGKTSIKNFLFELLKNDFVCRKTPRSVNTLAGLIQ 204

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   + V     I E G    G+I  +T  + P IA++  I   H+  F  +E I + K
Sbjct: 205 DVNNELAVGTQIYIAEAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLENIRATK 264

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                                 E L +K          +                  E S
Sbjct: 265 ---------------------LEALGSKRLEKAFVHSSTQANESEKIEIYDSNLSGVEAS 303

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              ++ +    E     +G   A N+ + +     L  D      AL+     E R +R 
Sbjct: 304 LDGIKFKLGEREFASPLLGKFNAANLAVCVKTALYLGLDEARIAAALARLKNVEHRLERI 363

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     +ID+ +N N   M A+  +++      EGR++ V   + E    S   + 
Sbjct: 364 DAGGK----IIIDDGFNGNFNGMSASYELVASY----EGRKVLVTPGIME---SSDEENE 412

Query: 391 DLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+++++      V L+   + +AL   L +   V   +    L   +  +   GD+++ 
Sbjct: 413 KLSKIINKT-FDIVMLTSSLNAVALLKHLSKPK-VIVIKDKSKLQEALAQNTKAGDLILF 470


>gi|83942754|ref|ZP_00955215.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
 gi|83846847|gb|EAP84723.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           EE-36]
          Length = 467

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 111/396 (28%), Gaps = 38/396 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--ATIIAI 113
           A L+V     +  +     PV          VD D+       A  A         IIAI
Sbjct: 68  ARLIVS--PGIPHLYPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAI 125

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GK+TT  ++   L    +          +IG  +      +D +  + EL      
Sbjct: 126 TGSNGKSTTSALVHHILKHAGR----PTQLAGNIGRGVLDIEPAIDGEVVVLELSSYQTD 181

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R LT    P +AV T ++P HL   +G+    +AK  +F        +    +     
Sbjct: 182 LARNLT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGRF 237

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L    S       +      +       +              +      +    G   A
Sbjct: 238 LAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLPGA 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N        +             + FH   G   R +     G    +++S   N  S 
Sbjct: 298 HNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVDSA 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A++    I     G                      L+E L    +   ++ G     
Sbjct: 358 VKALAAFRNIRWICGGLEKE-------------GGLGSLSEPLET--VRKAYVIGREAAQ 402

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L   +      TMD            GDVV++
Sbjct: 403 FAMKL--GVEAEVCGTMDIAVARAVEDAEAGDVVLL 436


>gi|221202432|ref|ZP_03575464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
 gi|221208109|ref|ZP_03581114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221172012|gb|EEE04454.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2]
 gi|221177709|gb|EEE10124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia multivorans CGD2M]
          Length = 461

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 117/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLA---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAERVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGGVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIETTIAGLRARIGRQNSRILAVL------EPRSNTMKLGVMKAQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWNLGDALSPLGDKARAFDDLHLLVKAVAEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|312866147|ref|ZP_07726368.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
 gi|311098551|gb|EFQ56774.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptococcus
           downei F0415]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 121/349 (34%), Gaps = 36/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVD 161
              S++ II ITGS GKTTT  M+   L++           + +IG P +   M   D D
Sbjct: 107 YRISESPIIGITGSNGKTTTTTMIADVLNA----GGQSALLSGNIGFPASEVAMTATDQD 162

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +        PH+AVIT + P H+      EE  +AK  + + +    
Sbjct: 163 TLVMELSSFQLMGVE----TFHPHMAVITNLMPTHIDYHGTFEEYVAAKWHLQDQMTAGD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN++    + L  K+ A                 Q        ++ ++  + +    
Sbjct: 219 YLILNFNQDLAKDLATKTQA----------TVVPFSTQEEVDGAYLKEGYLYFKGEQVMA 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L T+ +  +     +   + L+ F   + R +             
Sbjct: 269 ADSIGVPGSHNVENALATIAVAKLSGIANEVIAETLASFGGVKHRLQSLGQVQGVA---F 325

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + N  +          +S     + I + G     G    +   +L   +    +
Sbjct: 326 YNDSKSTNILA------TQKALSGFDNSKVILIAG-----GLDRGNEFDELVPDIK--GL 372

Query: 402 SHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     LK A  +  +    ++ +             GDVV++
Sbjct: 373 KKMVILGQSAPRLKRAADKAGVPYLDAKDVKEATWIAFEEAASGDVVLL 421


>gi|317493281|ref|ZP_07951703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918674|gb|EFV40011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 438

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 136/376 (36%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     S   +         +IG+P  +  +  + D
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKSAGWSV----GVGGNIGLPALML-LKQECD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTTSLRAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G             D       +   + W+ V+ +   
Sbjct: 210 VVNSDDALTMPIRGADSRCVSFGA------------DVGDYHLNRQQGEIWLRVRGEKIL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    + +L+     
Sbjct: 258 NTREMKITGKHNFTNALAALALADAVGIPRASSLKALTTFTGLAHRF---QLSLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA+ L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLAQYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     I + +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGEQLAALRPEV--AEQTETMEQAMRIIATRVKSGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFSRLAKEL 437


>gi|71909109|ref|YP_286696.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
 gi|109892702|sp|Q47AA5|MURC_DECAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71848730|gb|AAZ48226.1| UDP-N-acetylmuramate--L-alanine ligase [Dechloromonas aromatica
           RCB]
          Length = 463

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/420 (18%), Positives = 133/420 (31%), Gaps = 41/420 (9%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           + HA +   GA  VV++T + A    +       IPV            LA   RL+S  
Sbjct: 55  VGHAAENIAGADAVVISTAVKADNPEVIAARERKIPVV----PRA--QMLAELMRLKSG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++T  L+        +     +              DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVTSILAEGGIDPTFVIGGRLN---AAGANARLGSGDFLVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I+V+T I   H+  +    E   +    F        + +   
Sbjct: 163 ES-----DASFLFLSPVISVVTNIDADHMETYGHDFERLKSAFVDFLNRLPFYGVAVVCG 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D              I T     +       +           + V      + +  +  
Sbjct: 218 DDANIRDILPRVPKQIITYGLSNECNFHAENIVADNGQMRFDCVRVNGTTSRLSITLNTP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYN 347
           G H   N L  + + + +       +KAL+ F     R +RY         +    + Y 
Sbjct: 278 GMHNVLNALAAIAVATEVQVSDAAIVKALAEFKGVGRRFQRYGEVALPAGGSFTLVDDYG 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHV 404
            +P  M A ++      P        VL         ++    D  +VL       ++ +
Sbjct: 338 HHPVEMAATLAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVKVLSTVDALCLAEI 393

Query: 405 WLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G          +L  AL  S  V   + E +  +   I     DGDVV+   + S G
Sbjct: 394 YAAGEAPIVAADGRSLARALRVSGKVEPVFVEDIAAMPQTIMDVARDGDVVLCMGAGSIG 453


>gi|291166345|gb|EFE28391.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Filifactor
           alocis ATCC 35896]
          Length = 449

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 89/297 (29%), Gaps = 23/297 (7%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R   +  + + EL    L  I+      + HIA    + P HL+    ++     K+ IF
Sbjct: 146 RNADEHTWYVSELSSFQLEMIKEF----KCHIAGFLNLTPDHLNRHGSLKTYGEMKSNIF 201

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +   K     LNY+D +   L  K  +  +              +     +         
Sbjct: 202 KNQTKDDYAVLNYEDDYVCHLGEKLPSKVLYFSTKREVPFGIYLKEGYIYENITGIT--- 258

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                         G H  +N+LM + +        D     LS F   E R +      
Sbjct: 259 --NKLFDRKNVLLAGNHNMENVLMAMCMAYCANISFDCMKSVLSNFEGVEHRLEFVEMID 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   NP +   A+          E   I + G M +     +       +
Sbjct: 317 GV---RYINDSKGTNPDASVKAVEAF-------EKNIILIAGGMDKKVPFDKFVETFTGK 366

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L    +  + L G     +KD   +     V     M+            GD+V++
Sbjct: 367 HL--GKVKKLILLGETKNIIKDCAQKHGFDSVDLVNNMEEAVDVAHQQAEGGDIVLL 421


>gi|229815102|ref|ZP_04445439.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
 gi|229809332|gb|EEP45097.1| hypothetical protein COLINT_02144 [Collinsella intestinalis DSM
           13280]
          Length = 468

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 112/376 (29%), Gaps = 40/376 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S     AITG+ GKTT   +    L +       +G+  N    P+       + ++ + 
Sbjct: 108 SPERWCAITGTNGKTTVTSLTDELLRASGLDSVAVGNIGNA---PIHEVDRREEGEWFVA 164

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L           P +AV+  ++P HL+     E  A AK  +F+ ++      +
Sbjct: 165 ELSSYQLATTEAFH----PRVAVLLNLSPDHLAWHRSHENYALAKIRMFKNMDDGDIAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N +D        +    G + ++       A                 + ++    E   
Sbjct: 221 NVEDEGLSPYLDRICGPGRRVLHLGFADDGAADAAFVRD-------DVLTVRMAGDEHAL 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +           L       A    A+   +         + ++   ++       + 
Sbjct: 274 VRVDELRIVGAHNVLN----ALAASAAALACGASVTGVCSGLREFKPLPHRLEPVDTVDG 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 S       +       +G RI +L    + G   + F   +A  ++      V 
Sbjct: 330 VRYVNDSKATNTDAVLTALAAFDGARIVLLLGGSDKGTPLEEFMAKVASRVA-----CVV 384

Query: 406 LSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
             G     L+ AL  +     I +  +E +       +S    GD V++    +S     
Sbjct: 385 CFGEARERLRTALMDAPGATDIDIAEAEDLRDAVDVARSLAQRGDTVLLSPACASFDEFS 444

Query: 453 ----NSCGFYRLINLL 464
                   F   +  L
Sbjct: 445 GFEERGEAFRSYVADL 460


>gi|323491028|ref|ZP_08096220.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
 gi|323314692|gb|EGA67764.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio brasiliensis LMG
           20546]
          Length = 486

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/416 (14%), Positives = 136/416 (32%), Gaps = 50/416 (12%)

Query: 62  QKGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNK------------LAVAARLRSK 107
           QKGA + +     ++  +   +       ++      +            LA   R R  
Sbjct: 65  QKGATVFIGHAEENVSQASVVVVSTAINEENPEIIAARAARIPVVRRAEMLAELMRFRHG 124

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++T   S        +                  +   G   +
Sbjct: 125 ---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGSSRI 173

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
            ++   E       ++P ++++T I   H+  +    E +     +    L   G   + 
Sbjct: 174 LIAEADESDASFLHLQPMVSIVTNIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVC 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L         + + ++G S++AD ++  ++Q   +  +  ++     +++  
Sbjct: 234 VDDPVVRELIP----GISRQVITYGFSEDADVRIANYRQEGQQGKFTVIRQGKADLDITL 289

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    + + +      +  + A++       R              ++ + 
Sbjct: 290 NIPGRHNALNASAAIAVATEDDISDEAILNAMAGTQGTGRRFDHLGEFDTGNGHAMLVDD 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      + +G   +  V+         ++  + D A VL    +  + 
Sbjct: 350 YGHHPTEVDVTIQA----ARNGWQDKRLVMIFQPHRYSRTRDLYDDFANVLEQ--VDVLI 403

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      ++G    AL   +     +   +      L   + + L DGD+V+
Sbjct: 404 MLDVYSAGEKPIAGADGRALCRTIRSRGKLDPIFVPDSKALPSVLANVLQDGDLVL 459


>gi|15642537|ref|NP_232170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121587894|ref|ZP_01677650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|153817994|ref|ZP_01970661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|153822958|ref|ZP_01975625.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229507403|ref|ZP_04396908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229509672|ref|ZP_04399153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229516797|ref|ZP_04406243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229606910|ref|YP_002877558.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254851084|ref|ZP_05240434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262154693|ref|ZP_06028819.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
 gi|9657126|gb|AAF95683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121547864|gb|EAX57949.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 2740-80]
 gi|126511429|gb|EAZ74023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae NCTC 8457]
 gi|126519528|gb|EAZ76751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229345860|gb|EEO10832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae RC9]
 gi|229353146|gb|EEO18085.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae B33]
 gi|229354908|gb|EEO19829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae BX 330286]
 gi|229369565|gb|ACQ59988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MJ-1236]
 gi|254846789|gb|EET25203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MO10]
 gi|262030533|gb|EEY49171.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae INDRE 91/1]
          Length = 451

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|88799422|ref|ZP_01114999.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
 gi|88777732|gb|EAR08930.1| UDP-N-acetylmuramate--alanine ligase [Reinekea sp. MED297]
          Length = 480

 Score = 59.1 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 123/377 (32%), Gaps = 37/377 (9%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V  V  A   LA   R R     IAI G+ GKTTT  ++T  +   +     I     +
Sbjct: 101 RVPVVRRA-EMLAELMRYRHG---IAIAGTHGKTTTTSLMTAVMGRGEYDPTFIIGGRLN 156

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEE 205
                       +   G     ++   E       ++P  A++T I   H+  +    E 
Sbjct: 157 --------SAGSNARLGTSRYLIAEADESDASFLHLQPMTAIVTNIDADHMETYCGDFER 208

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +     E    +   G + L  DD     +           + S+G +  AD +    ++
Sbjct: 209 LKQTYVEFLHNVPFYGLVVLCTDDDNVRSILPSIQRQ----VMSYGFNDTADVRAIDIEK 264

Query: 266 CSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              Q+   V +    S+++     G H   N L  + + +         +K L+ F    
Sbjct: 265 KGLQTNFTVLRSGLPSLKIELKMPGDHNVLNALAVIAVATDEGVPDHEIVKGLNGFDGVG 324

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +            L+ + Y  +P  ++     +    P        V          
Sbjct: 325 RRFQVNGEFSTPKGDVLLVDDYGHHPRELQVTFDAIRTGWPER----RLVALFQPHRYSR 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIHV--HYSETMD 431
           ++  + D  +VL    +  + L            G    +L  ++ +   V   + E  D
Sbjct: 381 TRDLYEDFVDVL--SKVDVLLLLDVYPAGEEPINGADGRSLCRSIRQRGRVDPVFIEDKD 438

Query: 432 GLFLFIQSSLVDGDVVV 448
            +F  +   L DGD+++
Sbjct: 439 SIFSVLPDVLQDGDILL 455


>gi|329119656|ref|ZP_08248337.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464253|gb|EGF10557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 499

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/413 (17%), Positives = 127/413 (30%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +  ++   S P +  ++VL              K  ++A+ G+ GKTTT  ML  
Sbjct: 119 VVEAVLNRNLPYTSGPQWLAENVLQ-------------KHWVLAVAGTHGKTTTASMLAW 165

Query: 129 ALSSIKKTYAC-----IGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFL--TH 180
            L                +++    +P    + P     F + E                
Sbjct: 166 VLEYANLAPGFLIGGVPQNFSVSARLPQATRQDPDSTSPFFVIEADEYDTAFFDKRSKFV 225

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F  +  I +    +   +   G I  N  +   +    K  
Sbjct: 226 HYRPRTAVLNNLEYDHADIFPDLAAIQTQFHHLVRTIPSDGLIAANGREQSLKDTLEKGC 285

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +           +  +  ++ ++       K+  V    +G H   N L  +
Sbjct: 286 WTPVEAFGTS-------EGWQASEADAQGAFDVFLRGEKAGRVAWDLMGEHNRMNALAVI 338

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNANPASMKAAI 357
                   DV TA +ALS F   + R +     R       F     +     A ++  +
Sbjct: 339 AAARHAGVDVKTACEALSAFKNVKRRMEIKGRARGITVYDDFAHHPTAIATTIAGLRQRV 398

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M             L E L+      V+    G      +
Sbjct: 399 GGARILAVLEPRSNTMKLGTMK----------AALPESLAEA--DQVFCYAGGVDWDVAQ 446

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLL 464
              P    +H  +  D     I  +   GD ++V  SN  GF     +L++ L
Sbjct: 447 ALAPLGGKLHVGKDFDAFVAEIVKNAASGDHILV-MSNG-GFGGIHGKLLDAL 497


>gi|320540407|ref|ZP_08040057.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
 gi|320029338|gb|EFW11367.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Serratia
           symbiotica str. Tucson]
          Length = 439

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/417 (17%), Positives = 132/417 (31%), Gaps = 62/417 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A L+VV+  +  +  +LS      V  V DV              ++A I+AITGS GK+
Sbjct: 66  ADLIVVSPGVALATPALSAAADAGVEIVGDV--------ELFCREAQAPIVAITGSNGKS 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++     +             +IG+P     +  +    + EL    L      TH
Sbjct: 118 TVTTLVGQMAKAAGWAVGIG----GNIGLPALSL-LRQECQLYVLELSSFQL----ETTH 168

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +R   A +  +   H+  +  G+++   AK  ++E          +          A+ 
Sbjct: 169 SLRTAAATMLNVTEDHMDRYPFGLQQYRVAKLRVYENAGVCVVNTDDTLTLPVRGTDARC 228

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            + G+         +  +  LR   +    +         +       +    A N+   
Sbjct: 229 VSFGVDVGDYHLNCQQGETWLRVRGEKVLNTREMKLTGCHNYTNALAALALADAVNIPRA 288

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                           +L       G   R++          I++S   N  S +AA+  
Sbjct: 289 ---------------SSLKALTTFTGLPHRFQWVWECNGVRWINDSKATNVGSTEAALKG 333

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           L       EG    +LG   +  + S      L   L   N+  ++  G     L    P
Sbjct: 334 LQV-----EGMLHLLLGGDGKSADFSP-----LVRYLQGDNV-RLYCFGRDGAQLVQLRP 382

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                  +ET++     I   +  GD+V++    +S             F RL   L
Sbjct: 383 AV--ATLTETLEQAMRDIACRVQPGDMVLLSPACASLDQFRNFEVRGDSFVRLAQEL 437


>gi|254225932|ref|ZP_04919534.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
 gi|125621558|gb|EAZ49890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae V51]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHS 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|238797708|ref|ZP_04641203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
 gi|238718460|gb|EEQ10281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           mollaretii ATCC 43969]
          Length = 438

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 125/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCRENPAPIVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALTL-LKQENQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LVVLELSSFQL----ETTTSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ VQ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRF---QLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALEGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDQ 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +   ETM+   + +  +L  GD+V++    +S     
Sbjct: 365 I-KVYCFGRDGEELAALRPEVSQLT--ETMEQAMVLLSKNLAPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|229513465|ref|ZP_04402929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
 gi|229521606|ref|ZP_04411024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229341200|gb|EEO06204.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TM 11079-80]
 gi|229349342|gb|EEO14298.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae TMA 21]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|153215192|ref|ZP_01949873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|153825779|ref|ZP_01978446.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
 gi|124114837|gb|EAY33657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 1587]
 gi|149740502|gb|EDM54617.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-2]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|332139619|ref|YP_004425357.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549641|gb|AEA96359.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 452

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 139/425 (32%), Gaps = 52/425 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNPA--VEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIGLSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGM--SHL 172
            GKTTT  M+   L                 GVP     +    D  F + E     S  
Sbjct: 112 HGKTTTSSMVAWILEHAGLNP-----GYLIGGVPENFGVSARVGDSPFFVIEADEYDSAF 166

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
            + R      RP   VI  +   H   F+ +  I +    +   + + G I    +    
Sbjct: 167 FDKRSKFVHYRPKTLVINNLEFDHADIFADLAAIQTQFHHLVRMVPENGLILTPNNTPSI 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           E +  +          S GK  +A+   +         +  +        V    +G H 
Sbjct: 227 EDMLKRGCWSS---RQSLGKEWHAELLKKD-----GSEFNVLHNGVIVGTVNWSLVGQHN 278

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +         +  AI ALS+F   + R +       +     + + +  +P +
Sbjct: 279 VDNGLMAIAAAHHAGVTLTDAIDALSLFKNVKRRME----VKGEVNGITLYDDFAHHPTA 334

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-YNISHVWLS---G 408
           +   +  L      G  R +AVL    E    +    I    + +       V+L    G
Sbjct: 335 IATTLDGLR--KKVGNARILAVL----EPRSNTMKMGIYKDTLANSWQKADEVYLYEPEG 388

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLL 464
                +      +      + ++ +   + +    GD ++V  SN   F     R+++ L
Sbjct: 389 MDWSLVDSVAHSNAPTQCFKGVEKIVQGVCNVAQPGDHILV-MSNGS-FEGIHGRILDAL 446

Query: 465 LEEFP 469
             +F 
Sbjct: 447 ASKFK 451


>gi|207721547|ref|YP_002251986.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum MolK2]
 gi|206586708|emb|CAQ17293.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum MolK2]
          Length = 461

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 106/364 (29%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGLSARLTASDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 160 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRVLV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+     ++    FG    A + +       + S+  V        V  
Sbjct: 220 NGREESLKRVLARGCWSEVEL---FGAEDGAGWAIAN--LGDDDSFDVVLDGQVQGRVRW 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 275 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGVTVYDDFAHH 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 335 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASGRD 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 395 AL-----GWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLV-MSNG-GFGGVHQ 447

Query: 463 LLLE 466
            LL+
Sbjct: 448 KLLD 451


>gi|52842820|ref|YP_096619.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|59798151|sp|Q5ZSA5|MURC_LEGPH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52629931|gb|AAU28672.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 469

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 138/403 (34%), Gaps = 41/403 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV ++ +  +   +       IPV        A+  LA   R R     IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAM--LAELMRFRHG---IAIAGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +++  L+      + +     +               + + E   S      
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSFVIGGKLNS---CGANAQLGKSAYFVVEADES-----D 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   H+  +    E++ +   E    L   G   +  +D     +
Sbjct: 176 ASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICRI 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   +   Y F +  +        K    +  +      K + +     G H   N
Sbjct: 236 LPAIQRPTLT--YGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGRHNVLN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L ++ I + L  D D+ ++ L  F     R +       +    +I + Y  +P  + +
Sbjct: 294 ALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVDDYGHHPQEILS 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV- 411
            I    ++ P      +            +QS H    +VLSL +   +  ++ +G    
Sbjct: 354 TIDAFRRVWPERRLVHVF----QPHRYTRTQSLHRQFVDVLSLSDELLLMDIYAAGETAI 409

Query: 412 -----LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V    +   L   +   + DGDV++
Sbjct: 410 PGVTSENLANEIRSRDKRVTIV-SEQSLKATLDEFIKDGDVIL 451


>gi|187777501|ref|ZP_02993974.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
 gi|187774429|gb|EDU38231.1| hypothetical protein CLOSPO_01076 [Clostridium sporogenes ATCC
           15579]
          Length = 458

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 117/383 (30%), Gaps = 55/383 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A I  +TGS GKTTT  ++   L               +IG P         + 
Sbjct: 111 FIKYCPANIFGVTGSDGKTTTTTLVYEMLKKEGYKTWVG----GNIGTPLFANIEEMKED 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P I++IT ++P HL      EE   AK  IF+  E  
Sbjct: 167 HMVVLELSSFQLMTMDVS-----PEISLITNLSPNHLDVHKDFEEYVEAKKNIFKYQENN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN DD     ++ +  ALG    +S  +       L   K            +   
Sbjct: 222 DLLVLNKDDELTNRMEKE--ALGNILKFSLVEKVYDGACLSNNKLTILG-------KEVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L    +V+   +       A +      G   R           
Sbjct: 273 DSKDIKLKGRHNIANLLAAFCMVNKYVSIDSMKYVATNFS----GVEHRCEFIREVNGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P+   A ++         E   I + G     G   +     LAE      
Sbjct: 329 YYNDSIASSPSRTLAGLNAF-------EKPVILIAG-----GYDKKIPFEPLAEE-GYDK 375

Query: 401 ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           I  + L G     +K A  +        I +    +M+            GD++ +    
Sbjct: 376 IKTLILMGDTKSKIKSAFEKVILDKKCKIEIVMVNSMEEAVKVADDISEKGDIITLSPAC 435

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F  ++N L
Sbjct: 436 ASFDMYPNFEIRGNEFKNMVNSL 458


>gi|148359297|ref|YP_001250504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
 gi|148281070|gb|ABQ55158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila str.
           Corby]
          Length = 441

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 124/375 (33%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 81  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 135

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 136 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 195

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G ++     +          +  
Sbjct: 196 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGDAEWVAELIDDS----GSQFKI 251

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +       EV    IG    +N L  +        +   A KAL  F P + R +     
Sbjct: 252 LHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE----V 307

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +   
Sbjct: 308 RSNRHGVTVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAG 361

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +          +    +   I  ++ +GD V+V  
Sbjct: 362 EMAHALAPVDGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGDAVLV-M 420

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 421 SNR-GFNGIHQQLID 434


>gi|116492948|ref|YP_804683.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
 gi|122265588|sp|Q03EY1|MURD_PEDPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116103098|gb|ABJ68241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 455

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 120/358 (33%), Gaps = 43/358 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          +I +TGS GKTT   ++ + L   KK          +IGVP T    
Sbjct: 105 ELAYWVMDSE---LIGVTGSNGKTTVTTLIQLMLDDNKKH----AYVAGNIGVPATTVAQ 157

Query: 157 PVDVDF-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               +   + EL    L  I  L     PHIAV+  I  +HL      E   + K  I +
Sbjct: 158 KATAEDKIVMELSSFMLAGIDRLH----PHIAVLNNIFASHLDWHKTRENYVNDKMNITK 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              K   + +N+D++ ++ L  ++ A  +               L K      +  +  +
Sbjct: 214 NQTKDDFLVINWDNTEWQELAKRTQAKVVPFSR---------QGLTKSGAYEIEGKLYFK 264

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G    +N L  + +  I         + L+ F   + R    +   N
Sbjct: 265 DELIMEADEIGIPGEQNVENALAAIAVAKIEKVSTAHIKQVLTTFGGVKHRI---QYVEN 321

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   +  + + A+          +   I + G +          H DL  +
Sbjct: 322 LNGRQFYNDSKATDIEATQVALRSF-------KKPVILIAGGL--------DRHDDLDRL 366

Query: 396 L--SLYNISHVWLSGFHVLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
           +     N+  V ++G      K    ++      ++  +            +GD++++
Sbjct: 367 IPDLEPNVKEVIVNGETAEKFKKIAQKAGISVIKDSSRVSESVEIAYQDSKEGDIILL 424


>gi|296331096|ref|ZP_06873570.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674251|ref|YP_003865923.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151740|gb|EFG92615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412495|gb|ADM37614.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 109/345 (31%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 112 NAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I++I  +  AHL      E    AK +++     +    +N
Sbjct: 169 LSSFQLMGTH----AFRPEISLILNLFDAHLDYHHTRENYEKAKQKVYLHQAASDKAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  I    S         +  +     +   +    +         
Sbjct: 225 QDDETVVRLAEAGKAENIPFSVS---------KTLEQGAYVKDGMIMFNGEAIIPLEEVV 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 276 LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRL---QYVTTVKDRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S   +      G            G    +   DL   +   ++  V  
Sbjct: 333 ATNILATSKALSAFDKPVILLAG------------GLDRGNGFDDLKPYMK--HVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKLEKLGNEMGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|322513881|ref|ZP_08066960.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
 gi|322120280|gb|EFX92227.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Actinobacillus
           ureae ATCC 25976]
          Length = 436

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 112/348 (32%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNEEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++  +A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLKAVVATILNISEDHMDRY--------------NNSVEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEHNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L+ + +        +  +KAL V+   E R    +          
Sbjct: 257 TKEMLISGRHNEMNALVAMALAETAGIPREGIVKALQVYGGLEHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L  +     G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQVV-----GTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSNQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|153854762|ref|ZP_01995996.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
 gi|149752669|gb|EDM62600.1| hypothetical protein DORLON_01994 [Dorea longicatena DSM 13814]
          Length = 459

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/417 (17%), Positives = 136/417 (32%), Gaps = 48/417 (11%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  + +  A     ++P+          L +L            IAI+G+ GKTTT 
Sbjct: 76  TAAIHPDNEEFAEAVKQNLPML----TRAELLGQLMTNY----DVP-IAISGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML+  L + +                +       + ++ + E       E         
Sbjct: 127 SMLSHILLAGEMDPTISVGGILK---AIGGNIRVGNSEYFVTEAC-----EYTNSFLHFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I VI  I   HL  F  + +I ++     + L K GT+ +N +    E + A      
Sbjct: 179 PKIGVILNIDEDHLDFFKDLADIRNSFHRFAKLLPKDGTLVINDNIPNLEEITADLDCRV 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I+         +A   L   K   E S+  V+       +     G H   N L  + + 
Sbjct: 239 IRYGNDSSLDYSATNVLHDKK--GEASFDLVKSGEFIDRISLSVNGDHNVSNALSAIAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV---- 359
            +L        + L  FH  + R +             + + Y  +P  + A ++     
Sbjct: 297 DLLGVPFTKIKEGLKSFHGTDRRFEYKGEVNG----VTVIDDYAHHPTEINATLTAAKEY 352

Query: 360 -----LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                     PH   R  A+  +  +   L+ + H+ LA++ +      +   G     +
Sbjct: 353 PHKEIWCIFQPHTYTRTKALFPEFVD--ALTHADHVILADIYAARETDTL---GMSSEMI 407

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI---NLLLEE 467
            + L +     +Y  + + +  F       GD V++      G   ++     LL+ 
Sbjct: 408 AEELKKKGCDAYYFPSFEEIENFCLDKCQKGD-VLIT----MGAGNVVNIGENLLKR 459


>gi|54295451|ref|YP_127866.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
 gi|59798133|sp|Q5WTI7|MURC_LEGPL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53755283|emb|CAH16777.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Lens]
          Length = 469

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/403 (17%), Positives = 137/403 (33%), Gaps = 41/403 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV ++ +  +   +       IPV        A+  LA   R R     IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAM--LAELMRFRHG---IAIAGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +++  L+      + +     +               + + E   S      
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSFVIGGKLNS---CGANAQLGKSAYFVVEADES-----D 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   H+  +    E++ +   E    L   G   +  +D     +
Sbjct: 176 ASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICRI 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   +   Y F +  +        K    +  +      K + +     G H   N
Sbjct: 236 LPAIQRPTLT--YGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGRHNVLN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L ++ I + L  D D+ ++ L  F     R +       +    +I + Y  +P  + +
Sbjct: 294 ALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVDDYGHHPQEILS 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV- 411
            I    ++ P      +            +QS H    + LSL +   +  ++ +G    
Sbjct: 354 TIDAFRRVWPERRLVHVF----QPHRYTRTQSLHRQFVDALSLSDELLLMDIYAAGETAI 409

Query: 412 -----LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V    +   L   +   + DGDV++
Sbjct: 410 PGVTSENLANEIRSRDKRVTIV-SEQSLKATLDEFIKDGDVIL 451


>gi|54298603|ref|YP_124972.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148358651|ref|YP_001249858.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|296108259|ref|YP_003619960.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|59798137|sp|Q5X1S6|MURC_LEGPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224700|sp|A5IAW2|MURC_LEGPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53752388|emb|CAH13820.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila str.
           Paris]
 gi|148280424|gb|ABQ54512.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella pneumophila
           str. Corby]
 gi|295650161|gb|ADG26008.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Legionella pneumophila
           2300/99 Alcoy]
 gi|307611493|emb|CBX01164.1| UDP-N-acetylmuramate--L-alanine ligase [Legionella pneumophila
           130b]
          Length = 469

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 138/403 (34%), Gaps = 41/403 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +VV ++ +  +   +       IPV        A+  LA   R R     IAI G+
Sbjct: 73  KGADVVVRSSAVDFNNPEIVAARELMIPVI----PRAAM--LAELMRFRHG---IAIAGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +++  L+      + +     +               + + E   S      
Sbjct: 124 HGKTTTTSLVSSLLAEGGLDPSFVIGGKLNS---CGANAQLGKSAYFVVEADES-----D 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   H+  +    E++ +   E    L   G   +  +D     +
Sbjct: 176 ASFLFLKPMMAVVTNIDADHMDTYEGDFEKLRTTFLEFLHHLPFYGLAVVCLEDEEICRI 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   +   Y F +  +        K    +  +      K + +     G H   N
Sbjct: 236 LPAIQRPTLT--YGFKEEAHYRAINWTQKGMLSEFVVVRPAPHKQLTIQFQYPGRHNVLN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L ++ I + L  D D+ ++ L  F     R +       +    +I + Y  +P  + +
Sbjct: 294 ALASIAIATELGVDDDSIVRGLQKFQGVGRRFQMLGEKQFEKGAAIIVDDYGHHPQEILS 353

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV- 411
            I    ++ P      +            +QS H    +VLSL +   +  ++ +G    
Sbjct: 354 TIDAFRRVWPERRLVHVF----QPHRYTRTQSLHRQFVDVLSLSDELLLMDIYAAGETAI 409

Query: 412 -----LALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V    +   L   +   + DGDV++
Sbjct: 410 PGVTSENLANEIRSRDKRVTIV-SEQSLKATLDEFIKDGDVIL 451


>gi|312173524|emb|CBX81778.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           ATCC BAA-2158]
          Length = 438

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 126/373 (33%), Gaps = 50/373 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P+    +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAQAAGWQV----GVGGNIGLPVLTL-LQQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G             D       +    +W+ VQ +   
Sbjct: 210 VVNADDAMTIPVRGADARCLSFGA------------DVGDYHLTRQQGSTWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                H +G H   N L  L +   +     +++ AL+ F     R    +         
Sbjct: 258 NTDEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRF---QLVHEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I V  +ETM      I + +  GD+V++    +S     
Sbjct: 365 I-RIYCFGRDGAELA-ALRPEIAVQ-TETMAAAVRQIATRVQPGDLVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLI 461
                   F +L 
Sbjct: 422 NFEQRGDQFAQLA 434


>gi|323497893|ref|ZP_08102902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
 gi|323316938|gb|EGA69940.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           sinaloensis DSM 21326]
          Length = 441

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 115/345 (33%), Gaps = 38/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    +IAITGS GK+T  ++  +   +             +IGVP     +    D  +
Sbjct: 107 QVDKPVIAITGSNGKSTVTDLAGVVAKAAGLQV----GVGGNIGVPALEL-LEQPADLYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    ++  H+  + G+E    AK  IFE  E      
Sbjct: 162 LELSSFQL----ETTSSLNLKAAAFLNLSEDHMDRYDGMEGYRQAKLRIFEHAESCIVNA 217

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +                     +  G+        +       Q   E   Q     + 
Sbjct: 218 QDK---------------ATYPEHFKGELVEFSLTDKTQFSVQVQQNREYLCQDNLPILA 262

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+   L ++++L        + LS      G   R +   +      +++
Sbjct: 263 TDELTLVGRHNVANALVVLALLDCVGIDVSQGLSALKSYNGLTHRCQIVADNHGVKWVND 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L+       G+   ++G + +  + S     +LA VL+  N+  +
Sbjct: 323 SKATNVASTLAALSGLTLT-----GKLYLLVGGVGKGADFS-----ELAPVLAKLNV-QL 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G          P +    +   M  +  + +  L  GD+V++
Sbjct: 372 CCFGEDGAQFMALHPSAKQFTH---MQEIVEWAKPQLTTGDMVLL 413


>gi|255065972|ref|ZP_05317827.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
 gi|255049883|gb|EET45347.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria sicca ATCC 29256]
          Length = 472

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 116/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 93  VVEAILNRGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 139

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 140 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SKSPFFVIEADEYDTAFFDKRSK 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 198 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 258 GCWTPVEKFGT-------EHGWQVGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALA 310

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA  ALS F   + R +             F     +       ++ 
Sbjct: 311 VIAAARHAGVDIQTACAALSAFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            I     ++          LG M      S            L +   V+    G     
Sbjct: 371 RIGNARILAVLEPRSNTMKLGTMKAALPES------------LRDADQVFCYAGGVDWNV 418

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    +H  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 419 AEALEPLGSKLHVGKDFDAFVAEIVKNAEAGDHILV-MSNG-GFGGIHGKLLEALK 472


>gi|319778483|ref|YP_004129396.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
 gi|317108507|gb|ADU91253.1| UDP-N-acetylmuramate--alanine ligase [Taylorella equigenitalis
           MCE9]
          Length = 472

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 131/427 (30%), Gaps = 65/427 (15%)

Query: 53  GH--DFILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           GH  D++      GA  +VV+T        V    SL IPV         +  LA   RL
Sbjct: 56  GHSADYLD-----GADAIVVSTAVSQGNPEVLKARSLHIPVV----PRAIM--LAELMRL 104

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +S    IA+ G+ GKTTT  ++   L++       +     +              D+ +
Sbjct: 105 KSG---IAVAGTHGKTTTTSLVASVLATGGLDPTFVIGGRLNSAGANAKLGTG---DYIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS--AKAEIFEGLEKTGT 222
            E   S    +      + P IA+IT I   H+  +                        
Sbjct: 159 VEADESDASFLH-----LFPTIAIITNIDSDHMDTYGHDVAKLRGAFVEFAQRLPFYGSA 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I    D++   ++   S +     +      +  + +    +   +        +   + 
Sbjct: 214 IICTDDENVRNIMPFISCSSTTYGLNEQAHFRAINIENNGTRMEFDVIRKYQGKELPQLH 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------------- 329
           +  +  G H   N L  + + + +        KALS F+    R  +             
Sbjct: 274 ISLNIPGQHNVLNALAAIAVGTEVGVADSDIEKALSEFNGVSRRFTQVGDFDVIQNNGGG 333

Query: 330 -YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +    + G   +  ++             ++    PH   R      D           
Sbjct: 334 KFTVIDDYGHHPVEMDATIQAARGAWPTRRLVFAFQPHRYTRTRDCFEDFV--------- 384

Query: 389 HIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSS 440
             ++        +S V+ +G          AL  AL  + HV   + E ++ +   I   
Sbjct: 385 --NVLGKADAVILSEVYPAGESPIVAADGRALARALRVAGHVEPIFVEDINDMPKAILKI 442

Query: 441 LVDGDVV 447
             DGDVV
Sbjct: 443 AKDGDVV 449


>gi|301300388|ref|ZP_07206590.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851990|gb|EFK79672.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 437

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 93/325 (28%), Gaps = 47/325 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T I  AH+      E   +AK  I     + 
Sbjct: 142 DTIVTELSSFQLLGITEYH----PKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTED 197

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D+  ++ L  +S A              +     K        ++  +     
Sbjct: 198 DYFVVNWDNEEWQELSQRSKAR---------IVPFSRLGKSKGGAYVADGYLFYKEDKIM 248

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  I     +   + L+ F     R    +         
Sbjct: 249 PVDDIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFSGVRHRT---QYVTTLNGRK 305

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + +         +  G    + +L    + G   +     L        
Sbjct: 306 FYNDSKATNMEATEK--------ALAGFNNPVVLLAGGLDRGFTFEKLEPSL-----KNK 352

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV---KSS--- 452
           +  + + G     +  A   +      +T D             +GDV+++    +S   
Sbjct: 353 VHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSNEGDVILLSPACASWDQ 412

Query: 453 ------NSCGF----YRLINLLLEE 467
                     F     +L   L E+
Sbjct: 413 WPTFEVRGDKFIEAVEKLAKELEEK 437


>gi|297545530|ref|YP_003677832.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296843305|gb|ADH61821.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 464

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 134/403 (33%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP     D    L  +    +       IA++GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKYKYG-----IAVSGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++  +                   +       + ++ + E       E   
Sbjct: 119 GKTTTTSLISVIFN---GMGYDPTVLVGGEVDVIGGNVRVGNSEYFVTEAC-----EYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPPDGYVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  K++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYKDSDWKAKNIGFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  A+L +  E  + +      +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKALLNEFAESFDNADKI--IIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  +   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQKGKDVLYLKDFDSIMEYLNKNAKAGDLVL 440


>gi|258620877|ref|ZP_05715911.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
 gi|258625122|ref|ZP_05720039.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258582573|gb|EEW07405.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM603]
 gi|258586265|gb|EEW10980.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio mimicus VM573]
          Length = 486

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 127/373 (34%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G +++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFAEDADVRIENYRQQGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 273 GKFTVVRKGKANLDITLNIPGRHNALNASAAIAVATEDDISDEAILRAMANTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 333 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYSAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 447 VLANILQDGDLVL 459


>gi|118472293|ref|YP_888509.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
 gi|118173580|gb|ABK74476.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium smegmatis str. MC2 155]
          Length = 520

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/482 (15%), Positives = 147/482 (30%), Gaps = 54/482 (11%)

Query: 10  LLQAIQGHSI-------GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           L  A+   +          +    V G+++  +   P + F A+ G    G  F   AV 
Sbjct: 18  LAAAVGAVASENPAGSSSDLAAVHVTGVTLRGQDAQPGDLFAALPGASAHGARFAADAVA 77

Query: 63  KGAGLVVVNTDMVASI-GSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
            GA  V+ +      + G+L +PV         L + A     R   +  ++ +TG+ GK
Sbjct: 78  AGAVAVLTDPSGADLLAGTLDVPVLVHPAPRSVLGEAAAIVYGRPAERLRVVGVTGTSGK 137

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIG----------------VPLTLARMPVDVDFG 163
           TTT  +    L +  +    IG+    I                   L    +   VD  
Sbjct: 138 TTTTYLAEAGLRAAGRVAGLIGTVGVRIDGTDLPSALTTPEAPALQALLALMVERGVDTV 197

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+  SH      +  +    +   T ++  HL     + +   AKA +F+        
Sbjct: 198 VMEV-SSHALAQGRVDGIG-FAVGGFTNLSRDHLDFHPTMADYFEAKARLFDPQSPNHAA 255

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                      ++  + A    T+ + G + +   +         Q ++ V   G   ++
Sbjct: 256 AAVICVDDQYGVQMAARAETPLTVSTSGAAADWRVEKITTAGPGAQEFVLVDPGGMHHQL 315

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G +   N  + + ++  +    + A   L                L Q F  L+D
Sbjct: 316 GVGLPGRYNVANAALAVALLDAVGVSPEQAAPGLRTATVPGRLESID---LGQDFLALVD 372

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            ++           +VL  +      R   V G     G        +    ++      
Sbjct: 373 YAHKPGA-----LQAVLETLRAAEPRRIAVVFGA----GGDRDPGKREPMGRVTAELADL 423

Query: 404 VWLSG-----FHVLALKDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVVVV-- 449
           V ++           ++ A+        S+                 +    GD+V++  
Sbjct: 424 VVVTDDNPRSEDPATIRSAILAGARAVASDAEIVEIGDRRAAIDHAVAWAQPGDIVLIAG 483

Query: 450 KS 451
           K 
Sbjct: 484 KG 485


>gi|332202563|gb|EGJ16632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA41317]
          Length = 450

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 123/342 (35%), Gaps = 36/342 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           II ITGS GKTTT  M+   L++  +     G  + +IG P +   ++  D D  + EL 
Sbjct: 114 IIGITGSNGKTTTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQIASDKDTLVMELS 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  ++       P IAVIT + P H+       E  +AK  I   +     + LN++
Sbjct: 170 SFQLMGVQEFH----PEIAVITNLMPTHIDYHGAFSEYVAAKWNIQNKMTAADFLVLNFN 225

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + L +K+ A  +     F   +  D          E   +  + +           
Sbjct: 226 QDLAKDLASKTEATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L T+ +  +   D  T  + LS F   + R    +   +       ++S + 
Sbjct: 276 GSHNVENALATIAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKST 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +          +S     + + + G     G    +   +L   +    +  + + G
Sbjct: 333 NILA------TQKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILG 379

Query: 409 FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
                +K A  ++   +  +  +             GDVV++
Sbjct: 380 QSAERVKRAADKAGVAYVEATDIADATRKAYELATQGDVVLL 421


>gi|296107344|ref|YP_003619044.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
 gi|295649245|gb|ADG25092.1| UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Legionella pneumophila
           2300/99 Alcoy]
          Length = 455

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 124/375 (33%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 95  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 149

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 150 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G ++     +          +  
Sbjct: 210 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGDAEWVAELIDDS----GSQFKI 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +       EV    IG    +N L  +        +   A KAL  F P + R +     
Sbjct: 266 LHNGVMVAEVSWPLIGQFNVENGLAAIAATWNAGVNPVVAAKALEQFSPVKRRLE----V 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +   
Sbjct: 322 RSNRHGVTVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAG 375

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +          +    +   I  ++ +GD V+V  
Sbjct: 376 EMAHALAPVDGAYVLEPQDFNLKDFVSSWICPYKICKNNGEIVKEIIKTVREGDAVLV-M 434

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 435 SNR-GFNGIHQQLID 448


>gi|269101758|ref|ZP_06154455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268161656|gb|EEZ40152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 127/378 (33%), Gaps = 51/378 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITGS GK+T   ++              G+          L  +  + +
Sbjct: 102 FAREVTKPVVAITGSNGKSTVTSLVGEMAKEAGIDVGVGGNIGF-----AALDMLAQNHE 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L        AV   ++  H+  + G+E+ + AK  IF       
Sbjct: 157 LYVLELSSFQLETTSSLHL----AAAVYLNLSEDHMDRYQGLEDYSQAKMRIFHHANLAV 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +      +             + SFG     D Q        ++ W+ +  Q    
Sbjct: 213 YNRNDLATKPTDF---------TGAMTSFG----FDDQDYGLVLIDDREWLAINQQPLMP 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +      D + A +AL  +     R    + A+ +     
Sbjct: 260 ADEIALVGRHNVANSLAALALADAAGIDREAACRALRRYTGLAHRC---QLAVTKHGVRW 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N AS +AA++ L     +  G+   ++G   +  + S     +L  VL+  N+
Sbjct: 317 VNDSKATNVASTEAALNGL-----NLAGKLHLLVGGDGKGADFS-----ELKTVLADLNV 366

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G       + +  +I     ETM        S+   GD++++    +S      
Sbjct: 367 -QLYCFGRDGYQFAELVDNAI---LVETMAQAMELAASTAQSGDMILLSPACASWDQFAN 422

Query: 453 ---NSCGFYRLINLLLEE 467
                  F  L   L ++
Sbjct: 423 FMARGDAFIELATELQDK 440


>gi|260220017|emb|CBA27134.1| UDP-N-acetylmuramate--L-alanine ligase [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 401

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 128/396 (32%), Gaps = 38/396 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  AL  LA   RL+     IAI G+ GKTTT  ++   L+        +     +    
Sbjct: 15  VPRAL-MLAELMRLKQG---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLNS--- 67

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                     +  + E   S    +  L     P +AV+T I   H+  +          
Sbjct: 68  AGANARLGSGEHIVVEADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGKLKKA 122

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
              F          +   D                 I S+G +++A+ +    +    Q 
Sbjct: 123 FVDFLHRMPFYGAAILCTDDPA---VRDICEQVTCPITSYGFNEDAEVRAVNVRAVGGQM 179

Query: 271 WMEVQLQG----KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              VQ +       MEVV +  G H   N L  + +   L       +KAL+ F     R
Sbjct: 180 HFTVQRRNGVVLPDMEVVLNLPGLHNVLNALSAIAVAVELNIPDAAVVKALAEFKGVGRR 239

Query: 327 GKRYRCALNQGFFTLI-DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            +RY         T+   + Y  +P  M A ++      P        VL         +
Sbjct: 240 FQRYGDLALPQGGTVTVIDDYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRYTRT 295

Query: 386 QSFHID----LAEVLSLYNISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGL 433
           +    D    +        ++ V+ +G          +L  AL     V   + + +  +
Sbjct: 296 RDCFEDFVKVIGAGADAVLLAEVYAAGEAPIVAADGRSLARALRIGGKVEPLFVDDIAAM 355

Query: 434 FLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
                 +  DGDV++   + S G    +++ LL  +
Sbjct: 356 PQAAIDNARDGDVLMCMGAGSIGAVPGKIVELLQNQ 391


>gi|149005804|ref|ZP_01829543.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|307126882|ref|YP_003878913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|147762744|gb|EDK69704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP18-BS74]
 gi|306483944|gb|ADM90813.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae 670-6B]
 gi|332077113|gb|EGI87575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae GA17545]
          Length = 450

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 140/391 (35%), Gaps = 47/391 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   +   D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++    + L +K+
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLAKDLTSKT 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +     F   +  D          E   +  + +           G H  +N L T
Sbjct: 237 EATVVP----FSTLEKVDG------AYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 287 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 337

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 338 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--PGLKKMVILGQSAERVKRAAD 390

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 391 KAGVAYVEATDIADATRKAYEIATQGDVVLL 421


>gi|187735162|ref|YP_001877274.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425214|gb|ACD04493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 436

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 111/380 (29%), Gaps = 53/380 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          IIAITG+ GKTTT  ++   L    KT         + GVP+    +
Sbjct: 94  ELACRFY---HGRIIAITGTNGKTTTTSLVEKILLRAGKT----AVACGNYGVPVAEI-L 145

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D    +  L +S             P +AV    AP H+  +  +E+   AK  IF+ 
Sbjct: 146 LRDSVPDVLALEVSSF--QLETIRDFHPDVAVWLNFAPDHMDRYKSVEDYHRAKLHIFDN 203

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +     +            +   L    +    +   AD   R        +      
Sbjct: 204 QTEKDLAVVRSG--------ERLPHLKASVLTFSPEDPAADLYYRGPLILEGGA------ 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +   G   +   N    +  V         A  A  V       G R       
Sbjct: 250 ----PLLNLEGTTLNQRHNAENAMAAVLACRHLGIPAETAAEVLKEFAPPGHRCETVRTL 305

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N  +++AA+           G            G+     ++ L  +L
Sbjct: 306 DGVLWLNDSKATNLHALEAALKSQHSPVILIAG------------GKDKGLDYVPLRPML 353

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS- 452
               +    + G     L+ A   ++    +  ++      +S    GD V+     SS 
Sbjct: 354 KE-KVRACVVFGQIADQLQHAFSPAVPTEKAADVEACVAKARSLARPGDTVLFSPGTSSF 412

Query: 453 --------NSCGFYRLINLL 464
                       F   +N L
Sbjct: 413 DMFTGYVQRGQAFRDAVNAL 432


>gi|224532736|ref|ZP_03673353.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
 gi|224512354|gb|EEF82738.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           burgdorferi WI91-23]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 124/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNDNLIGSFSDSRAVFIIPKVITFFVSYYLNIDLNRTGQILNNFKGIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R             +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLEFVKLVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S   D+         + + + G   + + + L +S I     +++     +       G
Sbjct: 366 FSKIADIVR-------TWILIRGSATVKIINILEKSSIQYFLFDSLREAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|332286762|ref|YP_004418673.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
 gi|330430715|gb|AEC22049.1| L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
           [Pusillimonas sp. T7-7]
          Length = 452

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 111/370 (30%), Gaps = 35/370 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTT+  ML   L    +    +             AR   +    + E   
Sbjct: 105 VLAVAGTHGKTTSSSMLAWILEHAGRRPNFLIGGIADD--LQVSARYQAERPLFVIEADE 162

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   +   G I    
Sbjct: 163 YDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIQTQFHHLVRTIPSQGRIVRPA 222

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D +  + +  +     + T    G+ +    +           +        +  +    
Sbjct: 223 DSAALDQVLERGCWTPVHTFGPGGQWEAQASEHASH-------FPVTHQGRHAGTIRWAL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  L     L       I+ALS F   + R +             + + + 
Sbjct: 276 TGEHNRMNALAALAAAEHLGVGPQAGIEALSAFRGVKRRMELRGTVRE----VDVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++   +  L      G+ R +AVL    +  ++G ++      LA+         V
Sbjct: 332 HHPTAIATTLEGLR--KQVGKRRILAVLEPRSNTMKLGAMAARLPEALAQ------ADLV 383

Query: 405 WLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G                 P          +D +   I  +   GD V+V  SN  GF
Sbjct: 384 FCFGADSGKHALGWDPAQVLSPLGARASSYSDLDKMVGAICQAAQPGDSVLV-MSNG-GF 441

Query: 458 YRLINLLLEE 467
             +   LL  
Sbjct: 442 GGIHQKLLNR 451


>gi|255505599|ref|ZP_05347122.3| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
 gi|255266860|gb|EET60065.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bryantella
           formatexigens DSM 14469]
          Length = 468

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 115/379 (30%), Gaps = 42/379 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+  ++A+TG+ GKTTT  +L   +   + +   +     +IGVP T   +    + 
Sbjct: 116 YENSRGDVLAVTGTNGKTTTTSLLGAIMKHARDSVFVV----GNIGVPYTQM-VTQTTED 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            +    +S            RP ++ I  I P HL+    +EE    K  I        T
Sbjct: 171 SVTVAEISSF--QLETIEAFRPKVSAILNITPDHLNRHHTMEEYIRVKELITLNQTPEDT 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNY+D              I         K       + +     + +          
Sbjct: 229 CVLNYEDEILREFGKSLSCRVIFFSSLRTLEKGISLNGDRIEYRDGDTVIPFCS-----T 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N++    +       V+     L  F   E R                
Sbjct: 284 GELKLPGRHNYENVMAAAAMALAYGVSVEDICYVLKRFTAVEHRI---EFVAEVDGVAYY 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +    I  + + +    G            G    S + +  +      + 
Sbjct: 341 NDSKGTNPDAAIKGIQAMDRPTLLIGG------------GYDKNSDYEEWIQ-AFDGKVR 387

Query: 403 HVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           ++ L G     +K+A  R        ++T +  F F       GD V++    +S     
Sbjct: 388 YLVLIGQTREKIKEAAERCGFTDTVLADTFEEAFDFCAGHARRGDAVLLSPACASWGMFP 447

Query: 453 ----NSCGFYRLINLLLEE 467
                   F  L++ L   
Sbjct: 448 NYEVRGKVFKELVHKLEHR 466


>gi|33593956|ref|NP_881600.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis Tohama I]
 gi|62900577|sp|Q7VUQ1|MURD_BORPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33564030|emb|CAE43296.1| putative peptidoglycan synthesis protein [Bordetella pertussis
           Tohama I]
 gi|332383374|gb|AEE68221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           pertussis CS]
          Length = 510

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 39/377 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA +     +  ++AITG+ GKTT   +    + +   +    G+ +      L 
Sbjct: 118 RALAGLAES--REYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALM 175

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A    D     + EL    L      T  + P  AV+  +   HL     ++  A AKA
Sbjct: 176 DALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKA 231

Query: 212 EIFE----GLEKTGTIFLNYDDSFFELLKAKSHALGIKT--------------IYSFGKS 253
            I +     +               + L  +S    +                  +  +S
Sbjct: 232 RILKPARLAIVNRDDPLAVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACES 291

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
            + D      ++  +           S  +    +      N L  L  + +  +     
Sbjct: 292 NDFDEPAPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGW 351

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
              L       G   R     + G    I++S   N  +  AA+  L         + + 
Sbjct: 352 GPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGL-------GQQVVL 404

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDG 432
           + G   +  + S          +   +   V L G    A+   L P  +    +  M  
Sbjct: 405 IAGGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCAAAADMRE 458

Query: 433 LFLFIQSSLVDGDVVVV 449
                      GD V++
Sbjct: 459 AVRRAAELAQPGDAVLL 475


>gi|332982161|ref|YP_004463602.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
 gi|332699839|gb|AEE96780.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mahella
           australiensis 50-1 BON]
          Length = 452

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 111/380 (29%), Gaps = 48/380 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
              S   I AITG+ GKTTT  +                    +IG+P+  A       D
Sbjct: 103 YRLSNVPIAAITGTNGKTTTTALTGHIFKLAGVN----TFVCGNIGMPMISAIEQYGPGD 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L  IR+     +PH++ I  I   HL+     +   + K+ IF       
Sbjct: 159 VVVAEISSFQLESIRYF----KPHVSAILNITEDHLNRHGTFDNYIAIKSRIFMNQGPDD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D+     L    +A  +         + A  +               +      
Sbjct: 215 YVVLNMDNEPCRQLIELPNAHVLPFSRKQELDEGAMVKDNYIICRLNS-----REDKICR 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N L +  I   +    D   + L  F   E R               
Sbjct: 270 VNDIKIPGKHNLENALASAAIAYAMGIGPDVIAQGLRTFEGVEHRI---EFVDEIDGVRF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL--Y 399
           I++S   NP +   AI  +        G  I + G M          H D    +     
Sbjct: 327 INDSKGTNPDAAVKAIEAVD-------GPIILIAGGM--------DKHADFTGFIEAFDS 371

Query: 400 NISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            +  + L G     +  A  R    +++   ++             GD +++    +S  
Sbjct: 372 KVKALVLLGETADQIASAARRMGFDNIYKVHSLQEAVEQAWHLSSAGDCILLSPACASWD 431

Query: 453 -------NSCGFYRLINLLL 465
                      F   +  L 
Sbjct: 432 MFDNFEQRGMVFKEAVRKLR 451


>gi|170760239|ref|YP_001788888.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum A3
           str. Loch Maree]
 gi|229486484|sp|B1KTF0|MURC_CLOBM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169407228|gb|ACA55639.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 458

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/388 (14%), Positives = 128/388 (32%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGNLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++   +   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVFKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SDMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKMF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L++   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIINSNMLGDKLRERGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKDGDLIL 441


>gi|307944896|ref|ZP_07660233.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
 gi|307771820|gb|EFO31044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseibium sp.
           TrichSKD4]
          Length = 466

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/408 (16%), Positives = 124/408 (30%), Gaps = 54/408 (13%)

Query: 83  IPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIK 134
           +P + VD    A    +  + +  R R     +A ++AITG+ GK+TT  ++   L S  
Sbjct: 81  LPHWTVDKARDAGIEVIGDVELFFRERRKVCPEAPVVAITGTNGKSTTTSLIAHLLKSAG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                      +IGVPL            + E     +     L   + P I +   ++P
Sbjct: 141 LDTQMG----GNIGVPLLELEPFHAERHFVIECSSYQID----LAPSLDPTIGIHMNLSP 192

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +E  A+ K  +  G +       +   +        +     +   +F    
Sbjct: 193 DHLDRHGSLENYAAIKERLVAGAKVAIVGVDDSLSTQIADRLELARKPVCRISGAFELPD 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                  K  +  + +    Q +   ++ +    G H  QN       + +L  D    +
Sbjct: 253 GVYAHQGKLFEAYDGA----QRKVGILDGIDSLRGDHNGQNAAAAFAALRVLKVDEAEIL 308

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K ++ F     R          G    +++S   N  +   A+S   +I     G     
Sbjct: 309 KGMADFPGLHHRM---EVVGRSGRLLFVNDSKATNADAAARALSSFDRIYWIAGGLP--- 362

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
                E G  S   +           ++  +L G         L   +    S T++   
Sbjct: 363 ----KEGGIASLDLYWP--------RVARAYLIGEAAEEFGKTLKGHVDYTLSGTLEKAV 410

Query: 435 LFIQSSLVDGD----VVVV---KSS---------NSCGFYRLINLLLE 466
           +   S           V++    +S             F   +  LL 
Sbjct: 411 VQATSDARADAADEVAVLLSPACASFDQYANFELRGSAFSEAVRNLLN 458


>gi|291460707|ref|ZP_06600097.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291416666|gb|EFE90385.1| UDP-N-acetylmuramate--alanine ligase [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 467

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 133/421 (31%), Gaps = 41/421 (9%)

Query: 61  VQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAI 113
           ++KG  LVV       +   + +     +P+          L ++    R       I I
Sbjct: 66  IEKGIELVVYTAAIHPDNPELVAAKKAGLPII----SRAGLLGEIMRNYRNA-----INI 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           +G+ GKTTT  M+   L                + V   +  +  ++  G  E  ++   
Sbjct: 117 SGTHGKTTTTSMIAEILLEADWDPT--------VTVGGMMRDIGGNIRVGQSENFIAEAC 168

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E         P I V+  +   HL  F  +E+I  +     E L + G + +N D   +E
Sbjct: 169 EYTNSFLSFYPTIEVVLNVEADHLDFFKDLEDIRHSFRRFTEKLPENGLLVINRDIPHYE 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                     +   +       A+F           S+   +   +   +     G H  
Sbjct: 229 YFTEGLRCRVLTYGHDRDADYTANFISYDHYAHP--SYTLFERGKELGPISLGVTGEHNI 286

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNA 348
            N L  + +   L  +++T  +AL  F   + R ++                    +   
Sbjct: 287 YNSLSAIAVGRALGIELETIRRALHRFQGTDRRFQKKGEVCGFTIIDDYAHHPQEIAATI 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A       +     PH   R  A++ D       +    +         N       G
Sbjct: 347 EAAKKYPHRKLWVAFQPHTYSRTAALMDDFAGALSQADEIVLADIYAAREKN-----TVG 401

Query: 409 FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLE 466
                L+   L ++ +V+Y      +  F+   L  GD +++      G  YR+ + LL+
Sbjct: 402 VSSEDLRRHMLEQNTNVYYIPDFQRIEDFLMERLQPGD-LLITM--GAGDIYRVGDALLK 458

Query: 467 E 467
            
Sbjct: 459 R 459


>gi|73542662|ref|YP_297182.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
 gi|109892727|sp|Q46WZ5|MURC_RALEJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|72120075|gb|AAZ62338.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha JMP134]
          Length = 475

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/413 (18%), Positives = 134/413 (32%), Gaps = 37/413 (8%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLR 105
            GHD    A   GA  VVV+T +              IPV         +  LA   RL+
Sbjct: 55  HGHDAANIA---GANAVVVSTAVSGDNPEVLAARSKRIPVV----PRAVM--LAELMRLK 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                +AI G+ GKTTT  ++   L+        +     +       AR+    DF + 
Sbjct: 106 QG---VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVA 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIF 224
           E   S           + P I VIT I   H+  +            E  + L   G   
Sbjct: 160 EADES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           L  DD     +        ++  ++   + +  + +    +                ++V
Sbjct: 215 LCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRHLNGHAEPPLDV 274

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           V +  G H  QN L  + I + L       +KAL  FH    R +RY             
Sbjct: 275 VLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATADGTGTFT 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNIS 402
              +     ++ A ++ +        R +                  + +   +    ++
Sbjct: 335 LVDDYGHHPVEMAATLSAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLGTVDALLLA 394

Query: 403 HVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            V+ +G   +   D  AL R++ V       + E M+ +   I ++   GDVV
Sbjct: 395 EVYAAGEAPIVAADGRALTRALRVAAKVEPVFVEQMEEMPQAIMNAARPGDVV 447


>gi|116626350|ref|YP_828506.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|123319314|sp|Q01Q49|MURC_SOLUE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116229512|gb|ABJ88221.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 472

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 140/422 (33%), Gaps = 43/422 (10%)

Query: 63  KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA  +VV++ +            +SIPV       G L  LA   RL+     IA+ GS
Sbjct: 74  AGARALVVSSAVDEQNPEVQEARRISIPVI----PRGEL--LAELMRLKYG---IAVAGS 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L+        +      +G            DF + E   S      
Sbjct: 125 HGKTTTTSMAATILNYAGLDPTVV--VGGRVGTMGGSNARVGHSDFLVVESDES-----D 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IAV+T +   HL ++  ++ I +A  E    +   G + +  DD+  + L 
Sbjct: 178 GSFLKLAPIIAVVTNVDREHLDHYPDLDAIRAAFLEFVNKVPFYGAVIVCLDDANVQGLL 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQN 295
            +          ++G +  AD +          S   ++ +         H  G H   N
Sbjct: 238 PEIRR----RTITYGTTAQADMEAGDISCGPFASEFRLRYRTADLGRFRLHIPGRHNVLN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            +  + +   L    DT  +AL  F   + R +                 +     +   
Sbjct: 294 AMAAIAVAMELEVKPDTIREALETFSGVDRRFQLRGQERGIAV-VDDYGHHPTEIRATLD 352

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GF 409
                     H   +          M E ++SFH           +  ++ +      G 
Sbjct: 353 GARQCGFRRIHVLFQPHRYTRTFHLMDEFARSFHQ-----ADSLFVMDIYAASEKPIPGV 407

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLL 465
              +L + + +  H  V Y  T+D     + ++  +GD+V+   + S      +++  L 
Sbjct: 408 TAESLVERIRQFGHRGVEYVGTLDRGVDALVAAASEGDLVLTLGAGSVYQAGEKVLERLR 467

Query: 466 EE 467
            E
Sbjct: 468 TE 469


>gi|207744339|ref|YP_002260731.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-me
           so-diaminopimelate ligase protein [Ralstonia
           solanacearum IPO1609]
 gi|206595744|emb|CAQ62671.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase protein [Ralstonia solanacearum IPO1609]
          Length = 461

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 106/364 (29%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGLSARLTASDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 160 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRAVPGQGRVLV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+     ++    FG    A + +       + S+  V        V  
Sbjct: 220 NGREESLKRVLARGCWSEVEL---FGAEDGAGWAIAN--LGDDDSFDVVLDGQVQGRVRW 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 275 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGVTVYDDFAHH 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 335 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAASGRD 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 395 VL-----GWDLAGALAPLGEQARAFSDLGALVDAVTAAARPGDHVLV-MSNG-GFGGVHQ 447

Query: 463 LLLE 466
            LL+
Sbjct: 448 KLLD 451


>gi|113869225|ref|YP_727714.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia eutropha H16]
 gi|123032665|sp|Q0K6M5|MURC_RALEH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|113528001|emb|CAJ94346.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 477

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/415 (19%), Positives = 131/415 (31%), Gaps = 41/415 (9%)

Query: 52  DGHDFILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAAR 103
            GHD          GA  VVV+T +              IPV         +  LA   R
Sbjct: 55  HGHD-----AANVTGANAVVVSTAVSGDNPEVLAARSKRIPVV----PRAVM--LAELMR 103

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
           L+     +AI G+ GKTTT  ++   L+        +     +       AR+    DF 
Sbjct: 104 LKQG---VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFI 157

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGT 222
           + E   S           + P I VIT I   H+  +            E  + L   G 
Sbjct: 158 VAEADES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGI 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             L  DD     +        ++  ++   + +  D +    +                +
Sbjct: 213 AVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVDARAVDGQMHFTVQRQLNGHTEPPL 272

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+V +  G H  QN L  + I + L       +KAL  FH    R +RY           
Sbjct: 273 EIVLNLPGLHNVQNALAAIAIATELEVPDAAIVKALREFHGVGRRFQRYGEVATPDGAGT 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYN 400
                +     ++ A ++ +        R +                  + +   +    
Sbjct: 333 FTLVDDYGHHPVEMAATLAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLGTVDALL 392

Query: 401 ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           +S V+ +G          AL  AL  +  V   + E M+ +   I  ++  GDVV
Sbjct: 393 LSEVYAAGEAPIVAADGRALTRALRVAGKVEPVFVEQMEEMPQAILDAVRPGDVV 447


>gi|239987056|ref|ZP_04707720.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 11379]
          Length = 475

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 124/391 (31%), Gaps = 42/391 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLT 127
           +  +  +     +PV+G  DV     +LA   R    +  A  +A+TG+ GKTTT  ML 
Sbjct: 83  DKPLFLAAAEAGVPVWG--DV-----ELAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLA 135

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L +         +   +IGV L  A +   + D    EL    L         +R H 
Sbjct: 136 SILEAAGLR----TAAVGNIGVSLLDAVLGETEYDVLAVELSSYQLHWA----PSLRAHS 187

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A +  +AP HL     +E  A+ K  ++EG        +  D +  +L++      G + 
Sbjct: 188 AAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTVACVYNV-ADPATEDLVREADVEEGCRA 246

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I     +              +++++  + +          +      N+   L   ++ 
Sbjct: 247 IGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEVTDVDPPAPHNIANALAAAALA 306

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A                    R     + G    +D+S   N  + +A+++    I   
Sbjct: 307 RAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDSKATNTHATEASLASYDSIVWI 366

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G       D   +G              +   +  V L G     + +AL R      
Sbjct: 367 AGGLAKGATFDELVIG--------------AAKRLRGVVLMGADRALIHEALTRHAPEVP 412

Query: 427 SETMD--------GLFLFIQSSLVDGDVVVV 449
              +D                    GD V++
Sbjct: 413 VVDLDRTDTGAMSEAVARAAELARPGDTVLL 443


>gi|226321051|ref|ZP_03796594.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
 gi|226233575|gb|EEH32313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           burgdorferi 29805]
          Length = 451

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/451 (13%), Positives = 129/451 (28%), Gaps = 77/451 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K++IF        I  +     +         + + + ++        F   + K  
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKARVILFSEFNPCDFDQDIFYCNEGKVY 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S +      +++ +V   I + ++  + + L     +  +       L      +  
Sbjct: 263 FNDSLIGSFSNSRAVFIVPKVITFFVSYYLNIDLNRTGQILNNFKGIEHRLEFVKSVQNV 322

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 A      T++                 +  +        + V G   E+  LS 
Sbjct: 323 MFYNDTASTIPESTVL----------------SVKSLKTKDNRINLIVGGTDKELDFLSF 366

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGD 445
           S   D+         + + + G   + +   L +S I     +++     +       GD
Sbjct: 367 SKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGD 419

Query: 446 VVVVK-SS-----------NSCGFYRLINLL 464
           +V+   +S               F  L+N L
Sbjct: 420 IVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|125575608|gb|EAZ16892.1| hypothetical protein OsJ_32369 [Oryza sativa Japonica Group]
          Length = 770

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFA-----IKGPHYDGHDFI 57
            T  +LL   +   +         + G+  D+  +A  + +       + G        +
Sbjct: 225 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCVGEEGLAG--------L 276

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSK-ATIIAITG 115
             A ++GA  VV +  +          +  VDD+  AL  L A   R  SK   +I + G
Sbjct: 277 TEADKRGAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAG 336

Query: 116 SVGKTTTKEMLTIALSSI 133
           + G TTT  ++     ++
Sbjct: 337 TDGVTTTAHLVRAMYEAM 354


>gi|115483276|ref|NP_001065308.1| Os10g0548900 [Oryza sativa Japonica Group]
 gi|13876527|gb|AAK43503.1|AC020666_13 putative UDP-N-acetylmuramoylananyl-D-glutamate-2,6
           -diaminopimelate ligase [Oryza sativa Japonica Group]
 gi|31433391|gb|AAP54910.1| UDP-N-acetylmuramyl-tripeptide synthetases family protein,
           expressed [Oryza sativa Japonica Group]
 gi|113639840|dbj|BAF27145.1| Os10g0548900 [Oryza sativa Japonica Group]
          Length = 757

 Score = 58.7 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFA-----IKGPHYDGHDFI 57
            T  +LL   +   +         + G+  D+  +A  + +       + G        +
Sbjct: 225 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCVGEEGLAG--------L 276

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSK-ATIIAITG 115
             A ++GA  VV +  +          +  VDD+  AL  L A   R  SK   +I + G
Sbjct: 277 TEADKRGAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAG 336

Query: 116 SVGKTTTKEMLTIALSSI 133
           + G TTT  ++     ++
Sbjct: 337 TDGVTTTAHLVRAMYEAM 354


>gi|312132521|ref|YP_003999860.1| mure1 [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773455|gb|ADQ02943.1| MurE1 [Bifidobacterium longum subsp. longum BBMN68]
          Length = 517

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 122/429 (28%), Gaps = 46/429 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFIL 58
           L + IQG      P           GI+ D+R + P       KG  +     +G   I 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKG-RFKAEYLNG---ID 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
            A   G    V  T+  A+  +   P   V+D   A++ L+ A     +++ T+I +TG+
Sbjct: 73  EA---GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGT 126

Query: 117 VGKTTTKEMLTIAL----------------SSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            GKTTT       +                     TY               + R   D 
Sbjct: 127 KGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
                 + +S         + +   +A    I+P H+S       E+    K +I    +
Sbjct: 187 GMKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAK 246

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  +            +             +      +  W    E +   +    
Sbjct: 247 SLVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPEHASFHIADGD 306

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++   H  I              ++           AL         G+  +    Q  
Sbjct: 307 QALGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRMEQFRDPQSN 366

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  N AS+ A +  + +       R   V G     G  +     ++ E    
Sbjct: 367 TLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAEN 422

Query: 399 YNISHVWLS 407
              + ++ +
Sbjct: 423 RIANFIFTA 431


>gi|311104002|ref|YP_003976855.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
 gi|310758691|gb|ADP14140.1| UDP-N-acetylmuramate--alanine ligase [Achromobacter xylosoxidans
           A8]
          Length = 468

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 132/407 (32%), Gaps = 36/407 (8%)

Query: 64  GAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  +V +T    D    I + +  +  V   L  L +L    R       IA+ G+ GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALM-LAELMRLKRG------IAVAGTHGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L++       +     +       AR+    D+ + E   S    +  L 
Sbjct: 117 TTTTSLVASVLAAGDLDPTFVIGGRLNS--AGANARLGQG-DYIVVEADESDASFLNLL- 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P +A++T I   H+  +    ++A  K+   E  ++          S    ++   
Sbjct: 173 ----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSAVLCSDDANVREIM 226

Query: 240 HALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +             + +  + Q    +                ++V  +  G H  +N
Sbjct: 227 PFVSRPITTYGLNEEAQVRAYEVQPAGTRMRFNVQRTHRDTLLPPLQVELNLPGLHNVRN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + + L    +   +ALS FH    R  +               +   +      
Sbjct: 287 ALAAIAVATELGVADEAICEALSSFHGVGRRFTQTGDFPVPANHGGGTFTVIDDYGHHPV 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF--- 409
            ++     +      R  VL         ++    D   VL   +   ++ V+ +G    
Sbjct: 347 EMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADAVLLTEVYAAGEPPL 406

Query: 410 ---HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
                 AL  AL  +  V   + E +  L   +   + DGDVV+V  
Sbjct: 407 VAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVMG 453


>gi|188026236|ref|ZP_02961393.2| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
 gi|188022175|gb|EDU60215.1| hypothetical protein PROSTU_03421 [Providencia stuartii ATCC 25827]
          Length = 472

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/406 (17%), Positives = 140/406 (34%), Gaps = 39/406 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV+T + A    +       +  +  A   LA   R R     IA+ G+ GKTTT 
Sbjct: 64  ASVVVVSTAISADNPEIQAAHELRIPVIRRA-EMLAELMRYRHG---IAVAGTHGKTTTT 119

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++   +        +                     + I E   S    +      ++
Sbjct: 120 AMISGIYAQAGLDPTFVNGGLVKS---AGTHARLGSSRYLIAEADESDASFLH-----LQ 171

Query: 184 PHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +AV+T I   H+  +    E +          L   G   +  DD     L  +    
Sbjct: 172 PLVAVVTNIEADHMDTYQGNFETLKDTFINFLHNLPFYGRAVMCIDDPVIRSLLPRV--- 228

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             + + ++G S++AD ++ K++Q      +   +     + VV +  G H A N    + 
Sbjct: 229 -SRYVTTYGFSEDADVRIVKYEQKGNQGFFTIARENMPELTVVLNAPGRHNALNATAAVA 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPASMKAA 356
           + +    D    + AL  F     R         R    +    ++ + Y  +P  + A 
Sbjct: 288 VATEEGIDDQHILSALVEFQGTGRRFDFLGNYSLRHVNGKEGEVMLVDDYGHHPTEVDAT 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF---- 409
           I      +   + R + V          ++  + D A VLS  ++     V+ +G     
Sbjct: 348 IKAAR--AGWPDKRIVMVFQPHRY--SRTRDLYDDFAHVLSQVDVLLMLEVYPAGEKPVP 403

Query: 410 --HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                +L   +     +   Y    + +   +  +L D D+++V+ 
Sbjct: 404 GADSRSLCRTIRGRGQLDPIYVAEPEQVAQILAQALEDNDLILVQG 449


>gi|73542546|ref|YP_297066.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
 gi|72119959|gb|AAZ62222.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Ralstonia eutropha JMP134]
          Length = 457

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 101/361 (27%), Gaps = 18/361 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +    + DF + E 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYNP-----GFLVGGVPQNFGISARVTESDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  ++ I +    +   +   G + +
Sbjct: 160 DEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLDAIETQFHHLVRTVPGQGRLVV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  ++    +  +     ++     G  + +D      K   +  + +      S ++  
Sbjct: 220 NGLEASLARVIERGCWSEVEQFG-VGDWRESDAGTDDGKDAFDVWFGDAVQGRVSWDLQG 278

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +    +     +  +  A    ++   +    +               F     +
Sbjct: 279 THNRMNALAAIAAARHVG-VPVAQAIESLGRFANVKRRMEVRGVAAGVTVYDDFAHHPTA 337

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                  ++  +     ++          LG M      S      +    +      + 
Sbjct: 338 IQTTLDGLRRRVGGARILAVLEPRSNTMKLGVMKAQLPASLEQADLVFGYGAPSGKDAL- 396

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                        P          +  L   ++++   GD V+V  SN  GF  +   LL
Sbjct: 397 ----GWDLAGALAPLGKKAAAFHDLGALVEAVRAAAQPGDQVLV-MSNG-GFGGVHQKLL 450

Query: 466 E 466
           +
Sbjct: 451 D 451


>gi|33598264|ref|NP_885907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           parapertussis 12822]
 gi|62900578|sp|Q7W4B2|MURD_BORPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33566822|emb|CAE39037.1| putative peptidoglycan synthesis protein [Bordetella parapertussis]
          Length = 508

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 110/375 (29%), Gaps = 37/375 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA +     +  ++AITG+ GKTT   +    + +   +    G+ +      L 
Sbjct: 118 RALAGLAES--REYRPRVLAITGTNGKTTVTALTRQLIEAGGMSARAAGNISPAALAALI 175

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            A    D     + EL    L      T  + P  AV+  +   HL     ++  A AKA
Sbjct: 176 DALDQDDLPQVWVLELSSFQL----ETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKA 231

Query: 212 EIFE----------------GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
            I +                 +E    + +         L         + +      ++
Sbjct: 232 RILKPARLAIVNRDDPLTVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACES 291

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
            DF     ++  +           S  +    +      N L  L  + +  +       
Sbjct: 292 NDFDEPAPRRKKDAPPPTRAGGRMSRLMPVDALRIRGVHNALNALAAMQLARSLDLGWGP 351

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L       G   R     + G    I++S   N  +  AA+  L         + + + 
Sbjct: 352 MLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGL-------GQQVVLIA 404

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLF 434
           G   +  + S          +   +   V L G    A+   L P  +    +  M    
Sbjct: 405 GGQGKGQDFSP------LVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCVAAADMREAV 458

Query: 435 LFIQSSLVDGDVVVV 449
                    GD V++
Sbjct: 459 RRAAELAQPGDAVLL 473


>gi|120597222|ref|YP_961796.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|146291595|ref|YP_001182019.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
 gi|166224730|sp|A4Y2N7|MURC_SHEPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224732|sp|A1REZ7|MURC_SHESW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120557315|gb|ABM23242.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella sp. W3-18-1]
 gi|145563285|gb|ABP74220.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella putrefaciens
           CN-32]
          Length = 488

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 70/396 (17%), Positives = 138/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +      + +   L IP+     V  A   LA   R R     +AI G+ GKTTT  +
Sbjct: 87  TAINAENPEIIAAKELRIPI-----VRRA-EMLAELMRYRHG---VAIAGTHGKTTTTSL 137

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +        +    +            L     +   G     ++   E       ++P 
Sbjct: 138 IASVYGQAGRDPTFVIGG--------LLNSAGTNARLGTSRYLIAEADESDASFLHLQPM 189

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I   H+  +    E++ S   +    L   G   +  DD     +  +      
Sbjct: 190 VSVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRI----G 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
           + + ++G S +AD Q   + Q   Q    V+ +GK   +++ +  G H   N L  + + 
Sbjct: 246 RHLVTYGFSDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    D    I+AL+ F     R +            ++ + Y  +P+ + A I      
Sbjct: 306 TEDEIDDSALIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAG 365

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLAL 414
            P        V+         ++  + D  EVLS  +   +          ++G    AL
Sbjct: 366 WPEK----RLVMAYQPHRYTRTRDLYEDFIEVLSQVDCLLLLDVYSAGEAPITGADGRAL 421

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++     +   +  + D L   +   L +GD+++
Sbjct: 422 CRSIRLRGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|329298857|ref|ZP_08256193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Plautia stali
           symbiont]
          Length = 439

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 128/375 (34%), Gaps = 47/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P           
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALTLLKSPAQL 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      T+ ++   A I  +   H+  +    +   A            
Sbjct: 155 YVVLELSSFQL----ETTYSLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENADIC 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  +   +       +          SFG     D       Q    +W+ V+ +    
Sbjct: 211 VVNADDGMTMPVRGADR-------RCVSFGI----DVGDYHLNQQQGSTWLRVKGEKVLN 259

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +   +   + +++KAL+ +     R    +          
Sbjct: 260 TDEMKLVGQHNYTNALAALALADAVNIPLASSLKALTTYSGLPHRF---QLVHEAHGVRW 316

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L       +G    +LG     G+   +    LA  L   N+
Sbjct: 317 INDSKATNVGSTEAALNGLQV-----KGTLWLLLG-----GDGKGADFTPLARYLQGDNV 366

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G H  AL  AL  ++    ++T++     I + +  GD+V++    +S      
Sbjct: 367 -RLFCFGRHGDALA-ALRPAV-ATCTDTLEQGMTQIAAQVQAGDMVLLSPACASLDQFRN 423

Query: 453 ---NSCGFYRLINLL 464
                  F +L   L
Sbjct: 424 FEQRGDRFAQLAKEL 438


>gi|83953993|ref|ZP_00962714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
 gi|83841938|gb|EAP81107.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sulfitobacter sp.
           NAS-14.1]
          Length = 461

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 112/396 (28%), Gaps = 38/396 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--ATIIAI 113
           A L+V     +  +     PV          VD D+       A  A         IIAI
Sbjct: 62  ARLIVS--PGIPHLYPAPNPVIVAAQDAGVPVDNDIGLFFQSFATLAWDNFDVVPKIIAI 119

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GK+TT  ++   L    +          +IG  +      +D +  + EL      
Sbjct: 120 TGSNGKSTTSALVHHILKHAGR----PTQLAGNIGRGVLDIEPAIDGEVVVLELSSYQTD 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
             R LT    P +AV T ++P HL   +G+    +AK  +F        +    +     
Sbjct: 176 LARNLT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGRF 231

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L    S       +      +       +              +      +    G   A
Sbjct: 232 LAGQLSEGAADDRVIRVSVDRKLTGLGWQVFARKGFLSEYRGGKQIGSIDLRSITGLPGA 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N        +             + FH   G   R +     G    +++S   N  S 
Sbjct: 292 HNHQNACAAYAACRTLGFAPKIIEAAFHSFGGLPHRSQTVGEAGGVRFVNDSKATNVDSA 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A++    I     G                      L+E L    +   ++ G     
Sbjct: 352 VKALAAFKNIRWICGGLEKE-------------GGLGSLSEPLET--VRKAYVIGREAAQ 396

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L   +      TMD       +    GDVV++
Sbjct: 397 FAMKL--GVEAEVCGTMDVAVARAINDAEAGDVVLL 430


>gi|300857279|ref|YP_003782263.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437394|gb|ADK17161.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           ljungdahlii DSM 13528]
          Length = 458

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 116/381 (30%), Gaps = 55/381 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A I  +TGS GKTTT  ++   L               +IG PL      +D +
Sbjct: 111 FIKYCPAKIYGVTGSDGKTTTTTLIYNMLKEQGYKSWVG----GNIGAPLFSRIEEIDPE 166

Query: 162 F-GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        P +AVIT I+P HL     +EE  +AK  IF+     
Sbjct: 167 DKVVLELSSFQLMGMDVS-----PEVAVITNISPNHLDIHKDMEEYVNAKKSIFKYQGNQ 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN D+     +  +  A G    +S  +   +   L+    C +        +   
Sbjct: 222 DVVILNRDNECTNAMVKE--AKGKVRQFSIEEELTSGGYLKGDILCIDG-------KKVC 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N+L     +    +  +    A +      G   R           
Sbjct: 273 KISEVKLRGMHNVANLLTAFSAIKEDVSVDNMKKVATTFE----GVEHRCEFVRELDGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +               +   G   +    D+        
Sbjct: 329 YYNDSIASSPTRTLAGLRAFDK-------------PVILIAGGYDKKIPFDVLAEEGYSK 375

Query: 401 ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           I  + L G     +K +  +        + +   +++       +    +GD+V      
Sbjct: 376 IKTLILMGATKDKIKKSFEKLKCEKGIDVPIVSVDSLTDAVNVAKELSTNGDIVTFSPAC 435

Query: 451 SS---------NSCGFYRLIN 462
           +S             F  +IN
Sbjct: 436 ASFDMFPNFEVRGNAFKDIIN 456


>gi|15594930|ref|NP_212719.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
 gi|3914074|sp|O51532|MURD_BORBU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|2688512|gb|AAB91522.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (murD) [Borrelia
           burgdorferi B31]
          Length = 451

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/451 (13%), Positives = 130/451 (28%), Gaps = 77/451 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPGVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  I+A+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRIETDISLFLMFNKNPIVAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K++IF        I  +     +         + + + ++        F   + K  
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYCKYFSKFKSKVRVILFSEFNPCDFDQDIFYCNEGKVY 262

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
              S +      +++ ++   I + ++  + + L     + ++       L      +  
Sbjct: 263 FNDSLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNRTGQILSNFKGIEHRLEFVKSVQNV 322

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 A      T++                 +  +        + V G   E+  LS 
Sbjct: 323 MFYNDTASTIPESTVL----------------SVKSLKTKDNRINLIVGGTDKELDFLSF 366

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGD 445
           S   D+         + + + G   + +   L +S I     +++     +       GD
Sbjct: 367 SKIADIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPGD 419

Query: 446 VVVVK-SS-----------NSCGFYRLINLL 464
           +V+   +S               F  L+N L
Sbjct: 420 IVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|253580421|ref|ZP_04857686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848151|gb|EES76116.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 467

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 136/408 (33%), Gaps = 43/408 (10%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A      +P+          L ++          T +AI+G+ GKTTT 
Sbjct: 84  TAAIHPDNPEFACAKEKGLPML----TRAELLGQIMRNY-----DTPVAISGTHGKTTTT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLV 182
            M++  L +         + +    +P     + V + +  + E       E        
Sbjct: 135 SMVSHILLAGDCD----PTISVGGILPAIGGNIRVGNSETFVTEAC-----EYTNSFLSF 185

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I++I  +   HL  F  I++I  +     E L   GT+ +N D   +E +       
Sbjct: 186 FPKISIILNMDADHLDFFKDIDDIRHSFRRFAELLPADGTLIINADTPKYEDIIRDL--- 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
               + ++G   +AD+Q            S+  ++   K         G H   N L  +
Sbjct: 243 -PCNVITYGLEHDADYQAADITYDKYGHASFSVLRNGVKVGSYYLKVPGIHNVSNALAAI 301

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKA 355
            +  +L    +  IK L  F   + R +                         + A    
Sbjct: 302 ALGHLLGLSEEVIIKGLGSFTGTDRRFQYKGEVAGVTIVDDYAHHPTEIEATLHAAHNYP 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
              +     PH   R  A+L +  +   LS + H+ +A++ +      +   G     L+
Sbjct: 362 HKKLWCVFQPHTYTRTKALLPEFAK--ALSLADHVVVADIYAARETDTL---GISSEDLQ 416

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
             +        Y  T D +  ++ S+  +GD +++      G   ++N
Sbjct: 417 KRIQELGTPCEYFPTFDEIENYLLSNCQEGD-LLIT----MGAGDVVN 459


>gi|197285916|ref|YP_002151788.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227356423|ref|ZP_03840811.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
 gi|229620052|sp|B4F110|MURC_PROMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|194683403|emb|CAR44145.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis HI4320]
 gi|227163533|gb|EEI48454.1| UDP-N-acetylmuramate--L-alanine ligase [Proteus mirabilis ATCC
           29906]
          Length = 487

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 139/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     +AI G+ G
Sbjct: 79  ASVVVVSTAISADNPEIIAAREARIPVI-----RRA-EMLAELMRYRHG---VAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                      G     ++   E    
Sbjct: 130 KTTTTAMISNIYAQAGLDPTFVNGGLVK--------SAGTHARLGCSRYLIAEADESDAS 181

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+       + +          L   G   +  DD     +  
Sbjct: 182 FLHLQPMVAVVTNIEADHMDTYHGNFDNLKETFITFLHNLPFYGRAVMCIDDDVIRSIIP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S++AD ++  ++Q   +  +   +     ++VV +  G H A N 
Sbjct: 242 KV----GRYITTYGFSEDADVRITHYEQKGAQGFFTISREDMPDLDVVLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +      +  + AL  F     R              Q    ++ + Y  +P 
Sbjct: 298 TAAVAVATEEGIADEHILAALLNFQGTGRRFDFLGNFSLEHVNGQEGEVMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSG 408
            + A I       P        V+         ++  + D A VL+  +I   + V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMLFQPHRYTRTRDLYEDFATVLNQVDILLLTDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   + +   +   +   ++ +   +   L D D+V+V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRQRGKLDPIWVSDVENISSILAGVLTDNDLVLVQG 464


>gi|332976801|gb|EGK13630.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Psychrobacter
           sp. 1501(2011)]
          Length = 522

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 128/385 (33%), Gaps = 39/385 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            +    A I+AITGS  K+T   ++         +    G+        L   ++  ++ 
Sbjct: 155 FKDACTAPIVAITGSNAKSTVTTLVGQMAKDAGISVGVGGNIGVPALSLLDDEQLGDNMT 214

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  +  L       +A +  ++P HL     +     AK  IF+G +   
Sbjct: 215 LAVLELSSFQLETVTNLGA----KVATVLNMSPDHLDRHGDMLGYHQAKHRIFQGAQSVV 270

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++          S G +     +     +     ++    Q    
Sbjct: 271 VNRDDA--------LSRPLIADNTPRISIGSNAPDLGEYGIITEGDGSLYLAKGTQKLLA 322

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +  +    +++ ++ L  F     R +         +F  
Sbjct: 323 ADQLKVKGKHNLVNALAALALGELAGIPLESMLQTLQDFSGLPHRCQFVDNVAGIDYFND 382

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +   +  +    +  +   + HG+ + + +LG     G+       +L  +++ Y +
Sbjct: 383 SKGTNVGSTQAAILGLGSVYSSNSHGKTKLMLILG-----GQGKGQNFGELVPLVNKY-V 436

Query: 402 SHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVD-----GDVVV--V 449
           S V L G     + + L ++     + +++ +T+D      QS L       G V++   
Sbjct: 437 SQVLLIGEDAKLISEHLQQANLSDEVDMYHYQTLDQAMDKAQSLLGSSLSQVGAVLLSPA 496

Query: 450 KSS---------NSCGFYRLINLLL 465
            +S             F +L++ L 
Sbjct: 497 CASLDQYSSYNERGEHFCQLVDALK 521


>gi|239813924|ref|YP_002942834.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
 gi|239800501|gb|ACS17568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Variovorax
           paradoxus S110]
          Length = 707

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 103/381 (27%), Gaps = 28/381 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELG 168
           ++A+TG+ GKTT   +    +    K+ A  G+     +             D  + EL 
Sbjct: 313 VLAVTGTNGKTTVTALTGQLVERAGKSVAVAGNIGPTLLDTLAAHIDAETLPDVWVLELS 372

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF--EGLEKTGTIFLN 226
              L           P  A +  +   HL     ++  ASAKA IF  +GL         
Sbjct: 373 SFQLD----GVQGFEPTAATVLNLTQDHLDWHGDMQAYASAKARIFGTQGLMVLNRDDPG 428

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +K K     ++   +FG S          +         V+           
Sbjct: 429 VMAMLPAPVKVKLQRPQVRAHVTFGASMPLRPGDYGIE-RVNGMAWLVRALEADETQKRK 487

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  +  L  L    +L                           +  G      E +
Sbjct: 488 RGAVVEEEIFLQRLLPADVLRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYRGEPH 547

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MGELSQSFHIDLAEVLSLY 399
              P ++   +           G  +A L  + E       +G   +    +        
Sbjct: 548 RVEPIAIVDEVEYFDDSKGTNVGATVAALNGLGEDRRVVVILGGEGKGQDFEPLAAPVAQ 607

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
               V L G     ++ AL      + ++ +M        +    GD V++    +S   
Sbjct: 608 YARAVVLIGRDAPLIEQALAATGASLMHAGSMQEAVKLAAARANPGDAVLLSPACASFDM 667

Query: 453 ------NSCGFYRLINLLLEE 467
                  +  F   +  L +E
Sbjct: 668 FKDYEHRAAVFREAVQALEDE 688


>gi|319944703|ref|ZP_08018967.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
 gi|319741952|gb|EFV94375.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Lautropia mirabilis ATCC 51599]
          Length = 679

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 46/136 (33%), Gaps = 34/136 (25%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFIL-------------------HAVQKGAGLVVV 70
           +  DSR +   +AFFA+ G   DG  FI                     A    A   VV
Sbjct: 31  LVSDSRRVGKGDAFFALHGRRQDGSTFIAQAVQQGAAAVVVAIPAQACQAEDA-AEGDVV 89

Query: 71  NTDMVA------------SIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGS 116
             +  A                + +PV  V  +   L  LA            ++A+TG+
Sbjct: 90  QAEHAACGNFDYFKNLPTLPAGIQVPVCYVPCLGSQLGALADEYYDHPSQVLDVVAVTGT 149

Query: 117 VGKTTTKEMLTIALSS 132
            GKT+T   +   ++ 
Sbjct: 150 NGKTSTTHWIAQGVND 165


>gi|239996435|ref|ZP_04716959.1| D-alanine:D-alanine-adding enzyme [Alteromonas macleodii ATCC
          27126]
          Length = 48

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 20/43 (46%)

Query: 6  TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKG 48
          T   + + + G  +       V+ +S D+R++     + A+KG
Sbjct: 5  TLSWIAEKVNGKLLKGAADVEVSAVSTDTRTLEDGAVYLALKG 47


>gi|212635043|ref|YP_002311568.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella piezotolerans
           WP3]
 gi|226711874|sp|B8CNL2|MURC_SHEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212556527|gb|ACJ28981.1| UDP-N-acetylmuramate-alanine ligase [Shewanella piezotolerans WP3]
          Length = 489

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 138/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +   L IPV         +  LA   R R     +A+ G+ GKTTT  +
Sbjct: 88  TAISADNPELMAAKELRIPVVQ----RAEM--LAELMRYRHG---VAVAGTHGKTTTTSL 138

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +        +    +     +               + I E   S    +      ++P 
Sbjct: 139 IASVYGQADRDPTFVIGGLLNS---AGTNARLGHSRYLIAEADESDASFLH-----LQPM 190

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I   H+  +   IE++ +   +    L   G   +  DD     L  +      
Sbjct: 191 VSVVTNIEADHMDTYGGDIEKLKNTFVDFIHNLPFYGVAVVCIDDPIVRELLPRF----S 246

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + + ++G   +AD Q   + Q      +   +     + +  +  G H   N L  + + 
Sbjct: 247 RKVVTYGFGDDADVQAVGFTQTGYSSQFTVRRSGVADLNLSVNLPGEHNVLNALAAIAVA 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S    + +  IKAL+ F     R ++            + + Y  +P+ + A I    Q 
Sbjct: 307 SEDDIEDEAIIKALAEFQGIGRRFQQVGDFETAKGEVKLVDDYGHHPSEVAATIKAARQG 366

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD--AL 418
            P        V+         ++  + D  EVLS  +      V+ +G   +   D  AL
Sbjct: 367 WPER----RLVMIYQPHRYSRTRDLYEDFVEVLSQVDCLLLLDVYAAGEAAIPGADSRAL 422

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
            RSI V       +  + + L   +   L +GD+++
Sbjct: 423 CRSIRVRGQLEPVFVASTEQLQTVLPEILQNGDLLL 458


>gi|172059544|ref|YP_001807196.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia ambifaria MC40-6]
 gi|171992061|gb|ACB62980.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia ambifaria
           MC40-6]
          Length = 512

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 77/477 (16%), Positives = 149/477 (31%), Gaps = 45/477 (9%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F    G   DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLQAGDVFL---GYAVDGADNRAFIADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  ++ + +        A   +A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAAPAVPVALAVPALDQLA-GDIASGWYGDPSDSMLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIK------------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM- 169
            + +  AL+++                  + +       P     +    D G   + M 
Sbjct: 125 TQWIAAALTALHQPCAVIGTLGSGMHGHLVPTGFTTPDAPQLQRSLAQLHDAGAKAVAME 184

Query: 170 -SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN-- 226
            S     +   +     IAV T +   HL      +   +AKA++F        I     
Sbjct: 185 VSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAYEAAKAKLFAWRGLRAAIVNRDD 244

Query: 227 -YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                  E L  +   +      +     + +         +  +   ++      +V  
Sbjct: 245 AAGCRLLEKLAGRVRTIAYGIGDAQTPDADRELVALDVCATATGTAFHLRSSWGDADVEV 304

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L  LG +       D A+  ++      GR +R    L      ++ + 
Sbjct: 305 GTLGAFNVSNLLAVLGSLLAADVPFDAAVAEIARLESVNGRMQRLGGRLQNDEPLVVID- 363

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P +++  +  L  I+    GR + + G     G    +    L   ++      V 
Sbjct: 364 YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLADEVV 419

Query: 406 LS-----GFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++           + D +        H    E      L         DVVV+  K 
Sbjct: 420 VTSDNPRSEDPQRIIDQVIAGMTVPDHARRIEDRASAILQAVRGAAREDVVVLAGKG 476


>gi|256846972|ref|ZP_05552418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715636|gb|EEU30611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 457

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 135/416 (32%), Gaps = 53/416 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNK------LAVAARLRSKATIIAITGSVGKTTT 122
           + + D    + +  IP   V  V   + K       A          ++++TGS GKTTT
Sbjct: 68  LADEDFDYVVKNPGIPY-DVPLVAAFVKKGTPIITEAELGYEIFSGHLVSVTGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
             ++   L +     + I  Y  +IGV  T     +   D+ + EL    L      T  
Sbjct: 127 TTLIQKMLDA---GLSHIAKYAGNIGVSFTKTAQELSADDYLVTELSSFQLL----GTPD 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + PHIAVIT I   HL      E   +AK  I     K   + +N+D   ++ +  +S  
Sbjct: 180 LHPHIAVITNIFANHLDYHKTRENYINAKLNITRNQTKDDYLIMNWDRDEWQEIARRS-- 237

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  S      +     K     E   +  + +          IG    +N L  + 
Sbjct: 238 -------SATIVPFSRLGKSKDGAYVEDGVIYWRGEKVMPTKDIRLIGPQNVENALAAIA 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              +   D +  I  L+ F     R    +  ++       ++S + +  + + A+    
Sbjct: 291 AAKLSGVDNEAIINVLTTFGGVRHRL---QYVMDYQGRRFYNDSKSTDIEATEVALQGFE 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           Q      G            G         L       ++  + + G     +KDA  ++
Sbjct: 348 QPVILLAG------------GLDRGYTFERLVPYFKK-HVKALIVFGECKDKMKDAGEQA 394

Query: 422 I-HVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           +  V+ SE               GDV+++    +S             F   +  L
Sbjct: 395 VLPVYESENAVTAVPEAWKLSEPGDVILLSPANASWDQFPSFEVRGDKFIEAVEQL 450


>gi|163782320|ref|ZP_02177318.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882353|gb|EDP75859.1| UDP-N-acetylmuramate-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 467

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/388 (19%), Positives = 128/388 (32%), Gaps = 37/388 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     L IPV       G +  LA   +L+     IA++GS GKTTT  M+   L
Sbjct: 79  DNPELRRAKELGIPVI----PRGEM--LAELFKLKEG---IAVSGSHGKTTTTSMVAHIL 129

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I              R+  +   G  +L +S   E       + P + VIT
Sbjct: 130 EEAGFDPTVIIGGILQ--------RLGSNAKLGRGDLLVSEADESDGSFLKLSPAVNVIT 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  +  +E+I +A A+    +   G    N DD         + +   K + +F
Sbjct: 182 NIDLEHMDYYRDLEDIVAAFAKFAGSVPFYGFCVANADDPNVR----NATSSVTKKLITF 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G  K AD    +      +    V  +G+   ++     G H   N L    +   L   
Sbjct: 238 GIEKEADVVGTELSIEGGRYAFGVVFKGERLGKIRLSIGGRHNVYNALAATAVSLELGVP 297

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI------DESYNANPASMKAAISVLSQI 363
            +    AL  FH  E R +          +           +  +    M     ++   
Sbjct: 298 FEVVRSALEGFHNAERRMELKGFFGGVPIYDDYGHHPTEIRAVVSALREMYPGRRLVMVF 357

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
            PH   R   +     E+ +L     +      S  NI      G     L  AL     
Sbjct: 358 QPHRYSRTHFLFDSFVEVLKLPDLLLMLDIYPASEKNI-----YGVDAREL--ALRSG-- 408

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + E  + +   ++ +L +GDV++   
Sbjct: 409 ATFVEEKENVLSLLEENLREGDVLLFMG 436


>gi|325519768|gb|EGC99073.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia sp. TJI49]
          Length = 513

 Score = 58.3 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 79/481 (16%), Positives = 153/481 (31%), Gaps = 52/481 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   FI  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPAAQLHA---DTRSLGAGDVFVAYA---VDGADNRGFIAEAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTT 122
           A  V+   + +A+  +  + +     +     ++A             I +TG+ GKT+ 
Sbjct: 66  AAAVLYQPEGLAAASAAPVALAVPA-LDQLAGEIASGWYGDPSDSLLAIGVTGTNGKTSC 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----------------IFE 166
            + +  AL+++ +  A IG+  +  G+P  L                             
Sbjct: 125 TQWIATALTALHQPCAVIGTLGS--GMPGQLVPTGFTTPDAPQLQRSLAQLSAAGAKAVA 182

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      +    A               +N
Sbjct: 183 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-----KWKQCSEQSWMEVQLQGKSM 281
            DD+    L  K         Y  G ++ A    R       +  +  +   +       
Sbjct: 242 RDDAAGRRLLEKLAGRVRTIAYGIGDAQQAPDADRELVALDVRATATGTAFRLHSSWGDA 301

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +V    +G     N+L  LG +       D A+  ++      GR +R    L      +
Sbjct: 302 DVEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEVARLESVNGRMQRLGGRLQSDEPLV 361

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y   P +++  +  L  I+    GR + + G     G    +    L   ++    
Sbjct: 362 VID-YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLA 416

Query: 402 SHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
             V ++  +  +         +   +        +E      L         DVVV+  K
Sbjct: 417 DEVVVTSDNPRSEDPQAIIDQIVAGMTAPDRARRTEDRASAILQAVRGAAREDVVVLAGK 476

Query: 451 S 451
            
Sbjct: 477 G 477


>gi|325479474|gb|EGC82570.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 464

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/389 (13%), Positives = 111/389 (28%), Gaps = 30/389 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            ++ + + + +  S+  PV       G  L  L    +       IA++GS GK+TT  M
Sbjct: 79  AILDDNEELIAAKSVGCPVV----TRGVFLGALMRNYKNS-----IAVSGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L         +                    D+ + E          +      P 
Sbjct: 130 ISKILMHSDVDATILLGGELDEMKGNVRVG---SEDYLVTEACEYKGNIRYYY-----PQ 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             ++  I   HL  +  + +I +   E     +       N ++     L   S    + 
Sbjct: 182 TLIVLNIDEDHLDYYKDLNDIVNTFKEYLSNQDANSLTITNLNEEN-NKLIFDSVKGRLI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T     +  + +    K+ +    ++      G         IG H   N + ++     
Sbjct: 241 TYAQENEDADYNAINIKFDEVGRPNFDLRFPDGSIEHFELGVIGRHNINNAMASIISTYE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVL 360
               V+T    L  +   + R +      +    T             +  +      ++
Sbjct: 301 NGIPVETIRTNLVKYTGLDRRMQIIGFVDDATIMTDYGHHPSEIQVTLDALAEHTKGKLI 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
               PH   R   +  D     + +    +      +            H   + DAL  
Sbjct: 361 CVWQPHTYSRTKTLFNDFLNCFDSADEVIVTDI-YAAREKFDPTI----HSKDVVDALTK 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + I+  Y    +    +I   +   D+V+
Sbjct: 416 KGINAKYIGEFEDARDYIYKDIEKNDLVL 444


>gi|52841980|ref|YP_095779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52629091|gb|AAU27832.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 455

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 129/375 (34%), Gaps = 25/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA+ G+ GKTTT  M+   L         +    +        + 
Sbjct: 95  QWLAENILSKYQ--VIAVAGTHGKTTTTSMIAWILDQAGMNPGFLIGGVSSD---FNTSA 149

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP+IAV+  +   H   +  +  I      +
Sbjct: 150 CLGKGRWFVIEADEYDSAFFDKRPKFMHYRPNIAVLNNLEFDHADIYPDLAAIQQQFHYL 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K+G      DD     + ++     I+T+   G+++     +          +  
Sbjct: 210 LRTIPKSGVAIKPRDDKALNEVLSRGQFSRIETLALSGEAEWVAELIDDS----GSQFKI 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +   G   EV    IG    +N L  +        + + A KAL  F P + R +     
Sbjct: 266 LHNGGVVAEVSWPLIGQFNVENGLAAIAATWNAGVNPEVAAKALEQFSPVKRRLE----V 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + +  +P ++   I  L        GR   +   M E    +    +  A
Sbjct: 322 RSNRHGITVYDDFAHHPTAITKTIDAL-----KRSGRHQRIFAVM-EFASYTMRTGVHAA 375

Query: 394 EVL-SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           E+  +L  +   ++       LKD +   +      +    +   I  ++ +GD V+V  
Sbjct: 376 EMAHALAPVDGAYVLEPQDFNLKDFVSSWTCPYKICKNNGEIVKEIIKTVREGDAVLV-M 434

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   L++
Sbjct: 435 SNR-GFNGIHQQLID 448


>gi|239940572|ref|ZP_04692509.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           roseosporus NRRL 15998]
 gi|291444007|ref|ZP_06583397.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
 gi|291346954|gb|EFE73858.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           roseosporus NRRL 15998]
          Length = 472

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 124/391 (31%), Gaps = 42/391 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLT 127
           +  +  +     +PV+G  DV     +LA   R    +  A  +A+TG+ GKTTT  ML 
Sbjct: 80  DKPLFLAAAEAGVPVWG--DV-----ELAWRLRGDNGKKAAPWLAVTGTNGKTTTVRMLA 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
             L +         +   +IGV L  A +   + D    EL    L         +R H 
Sbjct: 133 SILEAAGLR----TAAVGNIGVSLLDAVLGETEYDVLAVELSSYQLHWA----PSLRAHS 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A +  +AP HL     +E  A+ K  ++EG        +  D +  +L++      G + 
Sbjct: 185 AAVLNLAPDHLDWHGSMEAYAADKGRVYEGNTVACVYNV-ADPATEDLVREADVEEGCRA 243

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           I     +              +++++  + +          +      N+   L   ++ 
Sbjct: 244 IGFTLGAPGPSQLGVVDGILVDRAFVANRQKQAQELAEVTDVDPPAPHNIANALAAAALA 303

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A                    R     + G    +D+S   N  + +A+++    I   
Sbjct: 304 RAFGVEPAAVRDGLRAFRPDAHRIEHVADIGEVAYVDDSKATNTHATEASLASYDSIVWI 363

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G       D   +G              +   +  V L G     + +AL R      
Sbjct: 364 AGGLAKGATFDELVIG--------------AAKRLRGVVLMGADRALIHEALTRHAPEVP 409

Query: 427 SETMD--------GLFLFIQSSLVDGDVVVV 449
              +D                    GD V++
Sbjct: 410 VVDLDRTDTGAMSEAVARAAELARPGDTVLL 440


>gi|254253293|ref|ZP_04946611.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895902|gb|EAY69782.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 497

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 118/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 141 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGISARLTDSSFFVIEADE 197

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 198 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 257

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +   +   +  EV    
Sbjct: 258 RAGALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYRQAERVGEVAWQV 314

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 315 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSIDGVTVYDDFA 370

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P +++  I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 371 HHPTAIETTIAGLRARIGRQNSRILAVL------EPRSNTMKLGVMKAQLPASLTDADLV 424

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L DAL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 425 FGYGAPTGRDALGWNLADALAPLGAKARAFDDLHLLVKAVVKAARPGDHVLV-MSNG-GF 482

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 483 GGVHQKLLD 491


>gi|229527526|ref|ZP_04416918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|229335158|gb|EEO00643.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 12129(1)]
 gi|327485027|gb|AEA79434.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio cholerae LMA3894-4]
          Length = 451

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DTALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEKVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|307154434|ref|YP_003889818.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
 gi|306984662|gb|ADN16543.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 7822]
          Length = 498

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 127/413 (30%), Gaps = 46/413 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N     +      P+F   DVL AL K             IA+ G+ GKTTT  +
Sbjct: 116 TAIAANNAEYQAAKENGYPIFHRSDVLAALIK---DYYS------IAVAGTHGKTTTSSL 166

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         I                     F + E   S             P 
Sbjct: 167 IGYMLLKAGLDPTIIVGGEVD---AWQGNARLGQGRFLVAEADES-----DGSLAKHSPR 218

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I   H  ++  +EE+           E                       L  +
Sbjct: 219 IGIVTNIELDHPDHYQNLEEVIQTFQIFERQCETLIACIDCETV---------RQRLNPQ 269

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             YS    K AD+ ++     ++ S     +      ++    +G H   N L  + +  
Sbjct: 270 ITYSLDPEKEADYTVKNVVYHAQGSLVEVWERGQYLGQMNISLLGQHNVSNSLAAVAVGR 329

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D +    A++ F   + R +               + Y  +P+ ++  +   +++ 
Sbjct: 330 KLGLDFEEIAVAVATFEGAKRRFEH----KGHCNGITFIDDYAHHPSEIRCTLEA-ARLR 384

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALK 415
            H +     V          + +F  + A   S  +   I+ ++ +G           + 
Sbjct: 385 SHQDCYSRVVAIFQPHRYSRTATFMDEFATSFSDADVVIITDIYSAGEVNLGQMSGQQVA 444

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLE 466
           DA+      V+Y  ++  L  F+   L  GD+ +       G   ++I  LL 
Sbjct: 445 DAISCYHKQVYYHPSLKSLGSFLVEILQPGDLALF---LGAGNLNQIIPELLA 494


>gi|302804600|ref|XP_002984052.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
 gi|300148404|gb|EFJ15064.1| hypothetical protein SELMODRAFT_119124 [Selaginella moellendorffii]
          Length = 492

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/395 (15%), Positives = 122/395 (30%), Gaps = 30/395 (7%)

Query: 65  AGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  +VV+        ++A      IP       +  L   A A        I A+TG+ G
Sbjct: 86  ASRIVVSPGVPLSEPILAYAMDSGIP------TISELGFAAEAFPK--AVKIAAVTGTNG 137

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+T        L          G+             M    D       +        L
Sbjct: 138 KSTVTTFTGQILQQAGVRTFVGGNLGTPFSDAACECFMFPSDDPPYQVTVLEVSSYQLEL 197

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P + VI  ++P HL     +E     K  +FE ++ +    + + D F   +  K
Sbjct: 198 PGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERMDSSKLSIIPHGDEFLRKVAYK 257

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            ++   K           D Q R+            + + +        +G H AQN   
Sbjct: 258 YNSGSTKAWLGALPGVQLDNQARRAVVV----VPTTKAEARLYLSGLKAVGSHNAQNAAT 313

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L   VD      ++        +      ++     I++S   N  +      
Sbjct: 314 ASLLSLALDLGVDEHKLQAAIGQLTPLPHRMQIVGQDKKGVLWINDSKATNVDA------ 367

Query: 359 VLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
             + I    + + + +LG + + + +        L+++L  +    +   G     ++  
Sbjct: 368 AYTGIKGLADRKAVILLGGLAKVLDQDGSLGFKKLSDLLQNH--RAIVTFGAFGKQIEKE 425

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L  +   I    S TM+      +     GD++++
Sbjct: 426 LKEANVSIPCFRSLTMEDAVAIAEKLSKQGDIILL 460


>gi|332283266|ref|YP_004415177.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427219|gb|AEC18553.1| UDP-N-acetylmuramate--L-alanine ligase [Pusillimonas sp. T7-7]
          Length = 468

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 133/422 (31%), Gaps = 39/422 (9%)

Query: 53  GHDFILHAVQKGAGLVV----VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD    A  +GAG +V    V+ D    + + +  +  V   L  L +L    R     
Sbjct: 56  GHD---AANIRGAGAIVTSTAVSADNPEVLAARAARIPVVPRALM-LAELMRLKRG---- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++   L++       +     +            +   G  E  
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAAGDLDPTFVIGGRLN--------SAGANARLGQGEFI 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNY 227
           +    E       + P + +IT I   H+  +        +   E  + L   GT  L  
Sbjct: 158 VVEADESDASFLNLLPVMCIITNIDVDHMDTYGHDVARLKSAFIEFTQRLPFYGTAVLCS 217

Query: 228 DDSFFELLKAKSHALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           DD     +            I S  + +  + +        +            M V  +
Sbjct: 218 DDPNVREIIPFVSRPVTTYGIESEAQVRALNVRADGTLMRFDVQRQGATGALPPMTVSLN 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G+H   N L  + + + L       +++L+ F+    R  +               + 
Sbjct: 278 LPGHHNVLNALAAIAVATELGVPDAAIVESLAAFNGVGRRFTQVGDFPVAAQQGGGTYTV 337

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISH 403
             +       ++     +      R  VL         ++    D   +L   +   ++ 
Sbjct: 338 IDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRILGQADAVLLTD 397

Query: 404 VWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS---- 451
           V+ +G          AL  AL  +  V   + E +  L   I+    +GDVVV+      
Sbjct: 398 VYPAGEQPLIAADGRALTRALRVAGKVEPVFVEDVAELPQTIRDFARNGDVVVIMGAGSI 457

Query: 452 SN 453
           S 
Sbjct: 458 SR 459


>gi|254291457|ref|ZP_04962249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
 gi|150422647|gb|EDN14602.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae AM-19226]
          Length = 451

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DTALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|284008381|emb|CBA74789.1| UDP-N-acetylmuramate--L-alanine ligase [Arsenophonus nasoniae]
          Length = 515

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 131/404 (32%), Gaps = 43/404 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M
Sbjct: 109 TAIAADNPEIIAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAM 159

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    +        I            +        + I E   S    +      ++P 
Sbjct: 160 IASIYAQAGLDPTFINGGLVK---AAGVHARLGTSRYLIAEADESDASFLH-----LQPL 211

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AVIT I   H+  +    E++          L   G + L  DD     L  +      
Sbjct: 212 VAVITNIEADHMETYDGDFEKLKQTFISFLHNLPFYGRVVLCIDDPVVRSLLPQI----G 267

Query: 245 KTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S +AD ++  +KQ      +   +     +  + +  G H A N    + + 
Sbjct: 268 RYITTYGFSDDADVRITSYKQRGNQGFFTVARENRADLAFILNAPGRHNALNATAAIAVA 327

Query: 304 SILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           +    D    + AL  F     R              +    ++ + Y  +P  + A I 
Sbjct: 328 TEEGIDDSAILTALKKFQGTGRRFDLLGNFPLADVNGKKGSVMLVDDYGHHPTEVDATIK 387

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------ 409
              +  P+       V+         ++  + D A +L   ++     V+ +G       
Sbjct: 388 AAKEGWPNK----RIVMVFQPHRYTRTRDLYDDFANILEQVDVLLMLDVYPAGEEPIPGA 443

Query: 410 HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +L   +     +   +    D +   +   + D D+++++ 
Sbjct: 444 DSRSLCRTIRNRGKLDPIFIAEHDQIGETLAKIIEDNDLILIQG 487


>gi|241765423|ref|ZP_04763393.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364828|gb|EER59801.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax delafieldii 2AN]
          Length = 477

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 136/421 (32%), Gaps = 42/421 (9%)

Query: 67  LVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VV +T +              IPV         +  LA   RL+     IAI G+ GKT
Sbjct: 67  AVVTSTAVTGDNPEVLAAREKKIPVV----PRALM--LAELMRLKQG---IAIAGTHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++T  L+        +     +              D+ + E   S    +  L  
Sbjct: 118 TTTSLVTSVLAEAGLDPTFVIGGRLNS---AGANAKLGSGDYIVVEADESDASFLNLL-- 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKS 239
              P +AV+T I   H+  +             F   +   GT  L  D      +    
Sbjct: 173 ---PVMAVVTNIDADHMETYGHDFGRLKKAFVDFLHRMPFYGTAILCVDSPAVRDILPSV 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   +S      A     +  Q          +    MEVV +  G H   N L  
Sbjct: 230 TCPVTSYGFSEDAQVRAINVRAEAGQMRFTVQRRNGVTLPDMEVVLNLAGEHNVLNALSA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKAAIS 358
           + +   L    +  ++AL+ F     R +RY       G    + + Y  +P  M A ++
Sbjct: 290 IAVAVELNIPDEAVLRALAGFKGVGRRFQRYGDLPAKGGGHFTVIDDYGHHPVEMAATLA 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------ 409
                 P        VL         ++    D  +V+   +   ++ V+ +G       
Sbjct: 350 AARGAFPGR----RLVLAFQPHRYSRTRDCFEDFVKVIGSADAVLLTEVYAAGEAPVVAA 405

Query: 410 HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLL 465
              +L  AL  +  V   + + +  +   I  +  DGDVV+   + S G    +++ +L 
Sbjct: 406 DGRSLARALRVAGRVEPVFVDNVADMVQVIADNAKDGDVVMCMGAGSIGAVPGKVVEMLQ 465

Query: 466 E 466
            
Sbjct: 466 N 466


>gi|114564956|ref|YP_752470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336249|gb|ABI73631.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           frigidimarina NCIMB 400]
          Length = 440

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/416 (16%), Positives = 131/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   +     V  DV     ++A       K  ++ ITGS GK+
Sbjct: 67  ASQIIISPGVPIDTPEVRAALDMGIEVIGDVELFAREIADK-----KPCVVGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++   L +  K+ A       +IG P     +P + DF + EL    L      TH
Sbjct: 122 TVTTLVYEMLLAAGKSVAIG----GNIGTPALDL-LPQNADFYVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    A    ++  H+  +S +     AK  ++           +      E +   + 
Sbjct: 173 SLNCIAATCLNVSEDHMDRYSDLNTYREAKLRLYPQSRFVMYNRDDELTYPLEPMNQNNF 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            LG+    ++G             +        + L   ++   H+      A  +    
Sbjct: 233 GLGVPEGDAWGL---------SDGKIFHGDSEIINLIDVTLIGSHNHANLLAAMALADAC 283

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
           G+      +V  +   LS                 +   + I++S   N  +  AA+  L
Sbjct: 284 GVGKEAMIEVAKSFVGLSHR---------CELIAVKQGVSYINDSKATNVGATVAALEGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +       G    + G     G+   S    L E L   NI+ +   G     +      
Sbjct: 335 NSHL----GDLYLIAG-----GDGKGSDFRPLTEPL--SNITQLITLGRDGRKIAKLKAG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +I V    TM             GD+V++    +S             F + +  L
Sbjct: 384 TIEV---ATMAEAVAKAAELASSGDIVLLSPACASLDMYKNFMARGDDFRQCVESL 436


>gi|292489359|ref|YP_003532246.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
 gi|292898417|ref|YP_003537786.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291198265|emb|CBJ45371.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Erwinia amylovora
           ATCC 49946]
 gi|291554793|emb|CBA22618.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia amylovora
           CFBP1430]
          Length = 438

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 126/373 (33%), Gaps = 50/373 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P+    +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAQAAGWQV----GVGGNIGLPVLTL-LQQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTRSLHAAAATILNVTEDHMDRYPLGMQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G             D       +    +W+ VQ +   
Sbjct: 210 VVNADDAMTIPVRGADARCLSFGA------------DVGDYHLTRQQGSTWLRVQGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                H +G H   N L  L +   +     +++ AL+ F     R    +         
Sbjct: 258 NTDEMHLVGQHNYTNALAALALADAVGLPRASSLTALTTFKGLAHRF---QLVHEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H  G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HPAGILWLLLGGDGKSADFSP-----LTRYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I V  +ETM      I + +  GD+V++    +S     
Sbjct: 365 I-RIYCFGRDGAELA-ALRPEIAVQ-TETMAAAVRQIATRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLI 461
                   F +L 
Sbjct: 422 NFEQRGDQFAQLA 434


>gi|170755790|ref|YP_001783188.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B1
           str. Okra]
 gi|229486483|sp|B1IH05|MURC_CLOBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169121002|gb|ACA44838.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B1 str.
           Okra]
          Length = 458

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/388 (15%), Positives = 129/388 (33%), Gaps = 28/388 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   +      +I +    D    L  L    +       IAI+G+ GKTTT  M
Sbjct: 77  AAIASDNPEIIEAKEKNIKLMDRAD---FLGNLMKGYKYN-----IAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+            +   N  I        +  +V  G  +  ++   E +       P+
Sbjct: 129 LSHVALKANVDPTILVGGNLDI--------INGNVRVGESDFFITEACEYKSSFLKFFPY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  +++I +A ++  + + K G +    +D   + +  +++   I 
Sbjct: 181 IGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKEANCNVIT 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  + +  +       ++  V+   K   V  +  G H   N L ++ I   
Sbjct: 241 YGINSGDIQAHNIEYDEKAC---GNFDVVKDNQKLFSVKLNVPGKHNILNSLASICIGLA 297

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVL 360
                   I+ +  F     R +   C  N              S   + A       + 
Sbjct: 298 SDMKDKDIIEGIESFFGTHRRFELKGCKNNITVIDDYAHHPTEISATLDAAKKYPHNKMF 357

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
               PH   R + +  D  +  + +    +      +    + +  S      L++   +
Sbjct: 358 CVFQPHTYSRTLTLFDDFTKCFDNADEIILADI-YAAREKDTGIINSNMLGDKLRERGLK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + H  + +     ++  +  DGD+++
Sbjct: 417 CTNFHKFDDIK---NYLIENAKDGDLIL 441


>gi|283782955|ref|YP_003373709.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
 gi|283441889|gb|ADB14355.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Gardnerella vaginalis 409-05]
          Length = 599

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/449 (14%), Positives = 131/449 (29%), Gaps = 34/449 (7%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
            I    +    + D+R I      F IKG ++   +++L A  KG    V          
Sbjct: 64  NIDADEYFTNATYDTRDIKSGTLLF-IKG-NFK-SEYLLDADNKGLAAYVAEQSYAQYTK 120

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-- 135
           ++      V D   A++ LA A     + K TI+ ITG+ GKTTT       L+S     
Sbjct: 121 AVG---LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAILNSHSHGK 177

Query: 136 ---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                             +++  P       + R  VD D     + +S         + 
Sbjct: 178 AALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNDMKYLVMEVSSQAYKVNRVYG 237

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           ++  +A    I+P H+S       E+    K +I    ++                  ++
Sbjct: 238 LKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLLLQDAERN 297

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
           + L              D          +   +         +        ++A  +  +
Sbjct: 298 NVLVTTFARIKKDEIEGDACENNNFDDLDDDCINYCAPANDDDYTELLTPDYIAMPVENS 357

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +    +      + +            AL+       + +  A   + +  I+ 
Sbjct: 358 ESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIAGELGINQ 417

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLA 413
            + +        + + G M E+ + + S  I + +    Y  +   L       G     
Sbjct: 418 DTDLHALHAIENVKISGRM-EVFKDTHSNMIAVVDYAHNYISTKSVLDFVEERYGKFNPR 476

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +   +  S      +    +    Q+ + 
Sbjct: 477 I-TLITGSTGDKAVDRRKEIVEAAQNRIE 504


>gi|308185657|ref|YP_003929788.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
 gi|308056167|gb|ADO08339.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pantoea vagans
           C9-1]
          Length = 438

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 119/376 (31%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGLPALSL-LQSPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH ++   A +  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTHSLKAAAATVLNVTEDHMDRYPLGMQQYRAAKLRVYENAQIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+         +     LR   +    +         +
Sbjct: 210 IVNADDALTMPVRGADKRCVSFGVDFGDYHLNKQQGSIWLRVKGEKVLNTAEMKMAGQHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +     + ++   +                    ++         
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTQFNGLAHR---------------FQLVHEHQGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    ++G     G+   +    L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----QGTLWLLMG-----GDGKSADFTPLIPWLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G    AL  AL   I V  +ETM      I   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGDALA-ALRPDIAVR-TETMRQAMEQIAPQVKAGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 422 NFEQRGEQFAQLAKEL 437


>gi|242309750|ref|ZP_04808905.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523751|gb|EEQ63617.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 362

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            + +++++   G  +      F N I  D + I   + F A      D  D I  AVQ+G
Sbjct: 8   LSVNEIVEITYGTLLNQPSISFFNQICDDVQKIKKGDLFVA-----RDSKD-ISKAVQEG 61

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           A  ++ + ++  ++    +    V+++  AL ++     
Sbjct: 62  AFGILFSDEI--AMSDSEVAWIYVENLDEALVRILRHYL 98


>gi|167564198|ref|ZP_02357114.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           EO147]
          Length = 464

 Score = 58.3 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 145/410 (35%), Gaps = 39/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLGVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDD 229
               +        P I VIT I   H+  +            E  + L   G+  +  DD
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCIDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGI 288
                +        +     +G + +A  +    +    +    V +   + + VV +  
Sbjct: 220 PNVRQIVPLISRPVV----RYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLNLP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN L  + I S L        +AL+ F+    R +RY      G    + + Y  
Sbjct: 276 GLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDDYGH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 336 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 391

Query: 406 LSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G       +  AL  AL  +  V   +  T+D +   +      GDVV
Sbjct: 392 AAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARAGDVV 441


>gi|291326816|ref|ZP_06125975.2| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
 gi|291312715|gb|EFE53168.1| UDP-N-acetylmuramate--alanine ligase [Providencia rettgeri DSM
           1131]
          Length = 472

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 149/426 (34%), Gaps = 51/426 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + +    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 64  ASVVVVSTAISSENPEIQAAKELRIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFVNGGLVKS---AGTHARLGSSRYLIAEADESDASFLH-- 169

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +    + + +        L   G   +  DD     L  
Sbjct: 170 ---LQPLVAVVTNIEADHMDTYQGDFDNLTNTFINFLHNLPFYGRAVMCIDDPVIRSLLP 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S++AD ++ +++Q      +   +     + VV +  G H A N 
Sbjct: 227 KI----GRYITTYGFSEDADVRITQYEQKGNQGFFTIARENMPELTVVLNAPGRHNALNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D    + AL  F     R         R    +    ++ + Y  +P 
Sbjct: 283 TAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNFPLRNVNGKEGEVMLVDDYGHHPT 342

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D   VL   ++     V+ +G
Sbjct: 343 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFVNVLGQVDVLLMLDVYSAG 398

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                     +L  ++     +   Y   ++ +   +  +L + D+++V+ + + G  ++
Sbjct: 399 EKHVPGADSRSLCRSIRGRGQIDPIYVADIEQIPHILAQTLDENDLILVQGAGNIG--KI 456

Query: 461 INLLLE 466
              L E
Sbjct: 457 AKSLAE 462


>gi|153801140|ref|ZP_01955726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
 gi|124123373|gb|EAY42116.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae MZO-3]
          Length = 451

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DTALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|37678796|ref|NP_933405.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus YJ016]
 gi|60390522|sp|Q7MNV3|MURD_VIBVY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|37197537|dbj|BAC93376.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           YJ016]
          Length = 442

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 129/367 (35%), Gaps = 47/367 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++         +   +IGVP     +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANA----CGVKCAIGGNIGVPALDL-LEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+++   AK  IF+  +        
Sbjct: 162 LSSFQL----ETTTSLHLVAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNR-- 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +     SH      + +FG     D +         +SW+    Q         
Sbjct: 216 ---DDRQTYPETSHGQQSLALVTFGS----DDKEFGVMSHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D    + AL  +     R    +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRC---QVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L+       G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGLNC-----AGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        E M+ +   I   L  GD+V++    +S           
Sbjct: 375 FGADGDQF---MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARG 431

Query: 455 CGFYRLI 461
             F  L 
Sbjct: 432 DRFAELA 438


>gi|27364041|ref|NP_759569.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           vulnificus CMCP6]
 gi|30316015|sp|Q8DEK8|MURD_VIBVU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27360158|gb|AAO09096.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           CMCP6]
          Length = 442

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 128/367 (34%), Gaps = 47/367 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++         +   +IGVP     +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANA----CGVKCAIGGNIGVPALDL-LEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L        A    ++  H+  + G+++   AK  IF+  +        
Sbjct: 162 LSSFQLETTSSLHL----VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNR-- 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +     SH      + +FG     D +         +SW+    Q         
Sbjct: 216 ---DDRQTYPETSHGQQSLALVTFGS----DDKEFGVISHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D    + AL  +     R    +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRC---QVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L+       G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGLNC-----AGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        E M+ +   I   L  GD+V++    +S           
Sbjct: 375 FGADGDQF---MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARG 431

Query: 455 CGFYRLI 461
             F  L 
Sbjct: 432 DRFAELA 438


>gi|37527520|ref|NP_930864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|60390525|sp|Q7N145|MURD_PHOLL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|36786955|emb|CAE16029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid adding enzyme) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 436

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 122/375 (32%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREATAPIVAITGSNGKSTVTSLVGEMAKAANWQV----GVGGNIGLPALEL-LKKSCQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ +    A +  +   H+  +              +G+ +  
Sbjct: 154 LYVLELSSFQL----ETTYSLNATAAAVLNVTEDHMDRY-------------PQGVSQYR 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L         +      L +  +    +  +       ++  SE ++++V  Q    
Sbjct: 197 AAKLRIYHQAKRCIVNAQDPLTLPEMGMDSRCVSFGVDCGDYQLDSENAFLKVHNQSLLA 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L+ L +   +    + ++  L+V+   + R +  R          
Sbjct: 257 TNEIKLTGRHNYANGLVALALADAVGIPREASLATLTVYPGLDHRFQLARLNKGV---RW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S  AA+  L     + EG    +LG   +  + S      L   L    +
Sbjct: 314 INDSKATNVGSTMAALDGL-----NLEGTLYLLLGGDGKSADFSP-----LKPFLCGNKV 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L    P       +ETM+     I   LV GD+V++    +S      
Sbjct: 364 -QLYCFGRDGKQLAQLRPE--IATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRN 420

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 421 FEQRGHEFTRLAEEL 435


>gi|315636191|ref|ZP_07891445.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
 gi|315479552|gb|EFU70231.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Arcobacter butzleri JV22]
          Length = 300

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 101/294 (34%), Gaps = 29/294 (9%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +P D    I E G    G+I  +T  + P I VI ++   H+  F  +E I + K EI +
Sbjct: 28  LPADTQIYIAEAGARVKGDIEEITMFLEPQICVIGSVGEQHIEYFKTLENIINTKMEILK 87

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                                 K                     L   K   +  W +V+
Sbjct: 88  SPNMKMGFVHESVPISNSQNITKFPNS-----------------LHIVKSNLDGIWFDVE 130

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G         +G   A N+   + +   L  D+     AL+     E R ++      
Sbjct: 131 VGGNIEHFYAPILGSFNAINLTAVILVAHYLGMDILEIKAALTTLPQVEHRLQKIEANGK 190

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++D+S+N N   M  A++    I    EGR++ +   + E  + +      LA+ 
Sbjct: 191 ----IIVDDSFNGNLEGMLEAVN----ICSSYEGRKVIITPGLVESTDEANIL---LAKA 239

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   N  +V L+G     L  A      V+  +    +   +      GD+++ 
Sbjct: 240 IDE-NFDYVILTGSLNTQLLKANINENKVYILKDKSKMQEVLAELTRTGDLILF 292


>gi|289640757|ref|ZP_06472928.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
          Datisca glomerata]
 gi|289509333|gb|EFD30261.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia symbiont of
          Datisca glomerata]
          Length = 571

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 11 LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
          L    G   G      V GI+ DSR++ P + + A+ G    G  F+  
Sbjct: 22 LAVTGGAVAG----VVVRGITHDSRAVRPGDLYAALPGARAHGAAFVRQ 66



 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 113/400 (28%), Gaps = 48/400 (12%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
           PV    D    L  +A           T++ +TG+ GKTT   +L   L +   T   IG
Sbjct: 152 PVLVAADPRALLGPVAARVYGDPSAALTLLGVTGTNGKTTVAYLLEAGLRAAGHTTGLIG 211

Query: 142 SYNNH-IGVPLTLARMPVDVDFGIF-------------ELGMSHLGEIRFLTHLVRPHIA 187
           +      G  L   R   +                    + +S           +R   A
Sbjct: 212 TVQTRLAGTVLPSVRTTPEATDLQALLAVMAERGVTAAAMEVSSHAVALHRVGGIRFAGA 271

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
             T ++  HL     +E+  +AKA +F   E+TG   ++ D  +   L A          
Sbjct: 272 AFTNLSQDHLDFHPSMEDYFAAKAALFT-PERTGVSVIDTDTPWGRQLAAAVPGA----- 325

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            + G + +A ++          +           +V                + +  ++ 
Sbjct: 326 ITCGTAADAHWRAVDVTAGPTGTTFRALGPHGV-DVRVGIALPGAFNVGNALVALALLVA 384

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             V   + A  +       G+  R    Q F  L+D ++  +        ++L  + P  
Sbjct: 385 TGVPAPVAAAGLASLPGVPGRMERVDAGQPFLGLVDYAHTPDA-----VQTLLRTVRPLV 439

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LKDAL--- 418
            GR I VLG     G         L    +         +  +  +      +       
Sbjct: 440 SGRVIVVLG----CGGDRDRRKRPLMGAAAAAGADLAIFTSDNPRSEDPELIIAQMCTGV 495

Query: 419 -----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                     V                   GD VV+  K 
Sbjct: 496 GTLPPSARGRVMVEPDRAAAIRRAVGFARPGDAVVLAGKG 535


>gi|260663593|ref|ZP_05864482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
 gi|260551819|gb|EEX24934.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum 28-3-CHN]
          Length = 458

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 47/377 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VD 161
                  +I++TGS GKTTT  ++   ++           Y  +IGV  +     +   D
Sbjct: 107 YQVFAGHLISVTGSNGKTTTTTLIEQMVA---MGNPHRVEYAGNIGVSFSKVAEELGPDD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 164 TIVTEASSFQLLGA----PTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A  +                 +     +   +  + +    
Sbjct: 220 YLVINWDKEEWQKLAKRTNATVVPFSR---------LAKSQEGAYQKGGDLYWRQERIMA 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG    +N L  +    +     +  ++ L+ F     R    +  L+      
Sbjct: 271 AKDVVLIGPQNVENALAAIAAAKLSGVTNEAIVRVLTTFTGVRHRL---QYVLDYEGRRF 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + +  + + A+    Q      G            G         L       ++
Sbjct: 328 YNDSKSTDIEATEVALQGFEQPVILLAG------------GLDRGYTFERLVPYFRE-HV 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVK---SS---- 452
             + + G     +K A  ++      E+ D              GDV+++    +S    
Sbjct: 375 KALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILLSPANASWDQF 434

Query: 453 -----NSCGFYRLINLL 464
                    F   +  L
Sbjct: 435 PNFEVRGDRFIEAVEQL 451


>gi|239907962|ref|YP_002954703.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
 gi|259509768|sp|C4XK68|MURC_DESMR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|239797828|dbj|BAH76817.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio magneticus
           RS-1]
          Length = 457

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/389 (18%), Positives = 125/389 (32%), Gaps = 34/389 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       IPV         +  LA   RLR+    IA+ G+ GKTTT  +
Sbjct: 72  TAVTSDNPEVVVARERGIPVI----PRAEM--LAELMRLRTG---IAVAGTHGKTTTTSL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    +        I     +                G  E  ++   E       + P 
Sbjct: 123 LATIFTEAGYDPTVIIGGRLN--------AYGAGARLGQGEYLIAEADESDGSFLCLSPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            +V+T +   HL ++ GIE I  A  +    +   G   +  DD     +  + +     
Sbjct: 175 ASVVTNVDADHLDHYDGIEAIDDAFVDFLNNIPFYGVNVVCLDDPGVARILPRVNRP--- 231

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I ++G S  A  + R     +   +       +  E+  +  G H   N L  +G+   
Sbjct: 232 -ILTYGFSDKARLRGRIIDSGAMSCFEVSLDGKRLGEMRLNHPGRHNVLNALGAIGVSLE 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISV 359
           +   + T  +AL+ F     R +R           + G      ++  A   ++     +
Sbjct: 291 VGIPLGTIAEALAKFAGVGRRFERKGEKDGVVVVDDYGHHPAEIKATLATARAVYPERRL 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +    PH   R  A+ GD C   E +    +      S   I      G    +L   + 
Sbjct: 351 VVAFQPHRFSRTKALFGDFCTCFEAADELLLTEIYPASEAPI-----PGVSGESLGQGIR 405

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDV 446
           +     V Y      +   +   L  GD+
Sbjct: 406 QVTKTKVAYYPDFAAMEAALPGILRPGDL 434


>gi|261211101|ref|ZP_05925390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
 gi|260839602|gb|EEX66213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. RC341]
          Length = 451

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 117/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DTALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHC 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|302522557|ref|ZP_07274899.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
 gi|302431452|gb|EFL03268.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB78]
          Length = 470

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 142/418 (33%), Gaps = 45/418 (10%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G     GHD    A       VVV++ + A    L       IPV    D L AL     
Sbjct: 54  GATVHIGHDAAHLAEDT--SAVVVSSAIRADNPELVRARERGIPVVHRSDALAALMA--- 108

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                     +AI G+ GKTTT  ML ++L+++    +     +                
Sbjct: 109 ------GTRPLAIAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD---APGSNAHHGTG 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E   S         H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 160 EIFVAEADES-----DRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +        + ++G +++AD ++ K       S + V L GK 
Sbjct: 215 GTLVISADHEGARELTRRVRDRVDLRVLTYGSAEDADVRVHKVTPRGLTSEVTVSLNGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   + R +       +    
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRLQ----LKGEAAGV 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +SY  +P  M A +     +    EGR + V      +   +Q    ++ + L+L +
Sbjct: 331 QVVDSYAHHPTEMAADLEA---MRGAVEGRILVVFQP--HLFSRTQELGKEMGQALALAD 385

Query: 401 ISHVWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            S V           + +               V      D +   +      GD+V+
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVL 443


>gi|147678198|ref|YP_001212413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pelotomaculum
           thermopropionicum SI]
 gi|189082913|sp|A5D147|MURD_PELTS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146274295|dbj|BAF60044.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 73/461 (15%), Positives = 130/461 (28%), Gaps = 88/461 (19%)

Query: 61  VQKGAGLVVVNTDMVASIG-------------------------------SLSIPVFGVD 89
           V+KGA +V+ +                                       S  +P   V+
Sbjct: 27  VKKGASVVLADAGKPDYPDGELEDLTAAGVELSLGGYPGVGKESVDLVVVSPGVP-LTVE 85

Query: 90  DVLGALNK---------LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
            V  A+ +         LA      +++ I+A+TG+ GKTTT  ++              
Sbjct: 86  PVRAAVREGIPVTGELELAYYF---TRSPIVAVTGTNGKTTTTTLIGEIFKDAGMN---- 138

Query: 141 GSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                +IG PL          D  + E+    L          RP + V+  I P HL  
Sbjct: 139 TLVGGNIGSPLIAEVERYGPDDVIVAEVSSFQL----ETASTFRPKVGVVLNITPDHLDR 194

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +   A+ KA +F          LN DD     LKA   +  I         +     
Sbjct: 195 HGTMGNYAATKARMFANQGPGDFAVLNCDDPLAASLKAGVRSRVIFFSRRKELKEGVWVS 254

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                            +           G H  +N L  +     +  + ++    L  
Sbjct: 255 GGMIVASLNG-----HREVVCRSDELGLPGAHNLENALAAVAAAKAMGIESNSLAGTLRR 309

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R               I++S   NP +   A+    +      G          
Sbjct: 310 FKGVAHRL---EFVAEVDGVRYINDSKGTNPDAAIKALESYGEPIVLIAG---------- 356

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFI 437
             G+   S   + A  +       + + G     + +A       ++ Y++      L  
Sbjct: 357 --GKNKGSDFREFARKVKE-KAKVLVVLGQSAGLIAEAARAEGFENILYADGFREAVLLA 413

Query: 438 QSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
           +     GD+V++    +S             F  ++  L +
Sbjct: 414 RRVARPGDIVLLSPACASWDMFKSFEERGDLFKEIVLSLKK 454


>gi|75675242|ref|YP_317663.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           winogradskyi Nb-255]
 gi|118595669|sp|Q3STT0|MURD_NITWN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74420112|gb|ABA04311.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           winogradskyi Nb-255]
          Length = 466

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 108/381 (28%), Gaps = 43/381 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             AR    A  IAITG+ GK+TT  ++   +               +IG  +     P  
Sbjct: 106 ERARHAPDAPFIAITGTNGKSTTTALVAHLMREAGYDVQMG----GNIGTAILSLEPPRR 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    +     L   + P + ++  ++P HL     IE  A  K  +  G++ 
Sbjct: 162 GRVHVIEMSSYQID----LAPSLDPTVGILLNLSPDHLDRHGTIEHYAQVKERLIAGVQP 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT  +  DD +   +  +    G   +    K   A           ++  +       
Sbjct: 218 QGTAVVGVDDHWCAAIADRQEQAGRSVVRVSVKRPLA----HGVSVEQDRIVLVSGGARS 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +  +          N        +   A   +            G   R      +   
Sbjct: 274 EIADIGGIGSLRGRHNAQNAACASAGALALGVSRDILQQDLRSFPGLAHRMEQVGRKAHV 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  + + A+S   +I     G+  +  G +  +                  
Sbjct: 334 LFVNDSKGTNADATEKALSSFDEIFWIAGGKPKS--GGIASLDAFFPR------------ 379

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVV---KSS 452
            I   +L G         L   +    S T++                G VV++    +S
Sbjct: 380 -IRKAYLIGEAAQEFAATLEGKVAYEISGTLEAAVPAAARDAEGAGRAGAVVLLSPACAS 438

Query: 453 ---------NSCGFYRLINLL 464
                        F  L+  L
Sbjct: 439 FDQFRNFEVRGDRFRELVQAL 459


>gi|258404872|ref|YP_003197614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797099|gb|ACV68036.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfohalobium
           retbaense DSM 5692]
          Length = 444

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 117/354 (33%), Gaps = 58/354 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+A+TGS GKTTT  ++   L +  +          ++G PL+   +
Sbjct: 105 ELASWF---VNEPIVAVTGSAGKTTTTTLIAHILETAGRRVFSG----GNLGTPLSEYVL 157

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             D  D  + E+    L           P +AV+  +AP HL     +E  A   A++  
Sbjct: 158 AQDQADVLVLEVSSFQL----VHASSFHPKVAVLLNVAPNHLDYHEEME--AYVLAKLKL 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++          +  E L+++  +   +  +      +                    
Sbjct: 212 FAKQQPGDLAIAPYALKEDLESRHFSAADRVYFVPNDRFSCPQ----------------- 254

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N+         L  D     +AL+ + P   +  R +    
Sbjct: 255 -----------LPGEHNQANIEAAYLACRYLGVDEQAVAEALASYQP---QAHRLQIVGT 300

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                ++D+S      S++AA+    +         + + G   + G+ S      L   
Sbjct: 301 WNGVKVVDDSKATTIESLQAALRSFEE-------PIVLLAGGQFKGGDPS------LVAD 347

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    +  V L G +    + A      + +  T++       ++   GDV+++
Sbjct: 348 LIRTRVKEVVLFGDNRDVFESAWQGLAPMRWFPTLEDAVDHGATTTQSGDVLLL 401


>gi|87122629|ref|ZP_01078506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
 gi|86162087|gb|EAQ63375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Marinomonas sp.
           MED121]
          Length = 447

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 116/393 (29%), Gaps = 49/393 (12%)

Query: 91  VLGALNKLAVAAR-------LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           VL  L +  V  R           A ++AITGS  K+T   M+   L +  K      + 
Sbjct: 85  VLQTLAEQGVQMRGDIDLFCEHVNAPLVAITGSNAKSTVTTMVADMLLASGKNV----AV 140

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             ++G P     +    D+ + EL    L      T ++   +A I  ++  H+  +  +
Sbjct: 141 GGNLGQPALDL-LTHTPDYYVLELSSFQL----ETTRVLNAKVACILNVSEDHMDRYDSL 195

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +    K +++   E                 +    A  +      G        L ++
Sbjct: 196 YDYQRVKQKVYRNCESAVCNK-----------QDILTAPLLPAGTPVGVFTTGLADLNEF 244

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               ++ +       +        +         +    +  L      +          
Sbjct: 245 GLIEDEGFWLCHGVKRLYHSSDIRLKGKHNYANFLASFAMLHLLGVELKSDAIAEYLKTF 304

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
            G   R          T I++S   N  +  AA+  L             +LG   +  +
Sbjct: 305 SGLAHRCEFIAEHQGVTYINDSKGTNVGATLAALEGL----GSKHRNIHLILGGKGKGAD 360

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            S      L   +  Y +  V + G     +  AL    ++ + + +D + +      V 
Sbjct: 361 FSP-----LLSSIQQY-VKSVSVFGEDAKIIIGALGAVDNLSHYQDLDEVMVGCVEQAVA 414

Query: 444 GDVVVV---KSS---------NSCGFYRLINLL 464
            D+V+     +S             F  L+  L
Sbjct: 415 DDIVLFSPACASFDQFASYVARGEYFTSLVRAL 447


>gi|315304090|ref|ZP_07874491.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
 gi|313627531|gb|EFR96263.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria ivanovii
           FSL F6-596]
          Length = 461

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 47/325 (14%)

Query: 163 GIFELGMSHLG-------EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            + E   S                +  RPHI+VIT I  AHL   +   E   AK  I +
Sbjct: 160 AVAENATSEQHISMELSSFQLMGVNTFRPHISVITNIYEAHLDYHTDRSEYVQAKWHIQK 219

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +   + +N+D    + L  ++ A  I    +         Q        +   +   
Sbjct: 220 NQTEDDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFD 270

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H  +N+L ++ +   L    +  +  L  F   E R    +  + 
Sbjct: 271 DEVIGARDRILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVE 327

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  + + A+           G            G    +   +L   
Sbjct: 328 WQGRKFYNDSKATNILATQXALKGFKNPVILLAG------------GLDRGNSFDELLPF 375

Query: 396 LSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
               N+  + + G     +        I V+Y + ++            GD++++    +
Sbjct: 376 FK--NVKALIVFGETADKIGRVGKIAGIEVYYVDNVEAAVPVAYKESAPGDIILLSPACA 433

Query: 452 S---------NSCG-FYRLINLLLE 466
           S                 +  L+ E
Sbjct: 434 SWDQYRTFEVRGNAYMEAISELIEE 458


>gi|288939892|ref|YP_003442132.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
 gi|288895264|gb|ADC61100.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Allochromatium
           vinosum DSM 180]
          Length = 458

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 80/431 (18%), Positives = 146/431 (33%), Gaps = 56/431 (12%)

Query: 31  SIDSRSIAPQ-----------EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
             DSR   P              F    G  +D            A  +VV+  +  +  
Sbjct: 43  VTDSRERPPGLDVLQSELPEVAVFVG--G--FD-----PDVFAA-ATELVVSPGVPLAEP 92

Query: 80  SLSIPVFG-VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +   +   V     A+  + + AR    A + AITGS GK+T   ++ +      +   
Sbjct: 93  LIRQAIARGVP----AVGDIELFARE-IHAPLCAITGSNGKSTVTTLVGLMARLAGQRV- 146

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
              +   ++G P+    +  DV+  + EL    L         +R   AV+  ++  HL 
Sbjct: 147 ---AVGGNLGEPVLDL-LAPDVERYVVELSSFQL----ETVPSLRADAAVVLNVSADHLD 198

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            ++G+++ A  KA I++G                 ++ A       +  ++ G  + +DF
Sbjct: 199 RYAGLDDYARTKARIYQGARIAVVNR------DDPIVAAMPRDPEREIGFTLGVPEGSDF 252

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +    QSW+    +           G H   N L  L +       +  A +AL 
Sbjct: 253 ---GVRVLEGQSWICQGEEPILPTAAIRLPGRHNLANALAALALAQASAIPMAGACEALR 309

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           VF     R         +      D+S   NP +  AA+  L  I   G GR + + G  
Sbjct: 310 VFPGLPHRS---EFVAERAGARWYDDSKGTNPGATIAALEGL--IPEDGSGRVVLIAGGE 364

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  + +           ++       L G     +  AL  ++ +  +  MD       
Sbjct: 365 GKGADFAPLRAAVERAARAVV------LIGRDAPLIASALDGTVPLIRATDMDAAVALAA 418

Query: 439 SSLVDGDVVVV 449
             +  GD V++
Sbjct: 419 EHIEPGDCVLL 429


>gi|39993|emb|CAA45555.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|383709|prf||1904153A murD gene
          Length = 369

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 109/345 (31%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 30  SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVTE 86

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I++I  +  AHL      E    AK +++     +    +N
Sbjct: 87  LSSFQLMGTH----AFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIVN 142

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  +    S         +  +     + S +    +         
Sbjct: 143 QDDETVVRLAEAGKAEIVPFSVS---------KTLEQGAYVKDSMIMFNGEAILPLEEVV 193

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 194 LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRL---QYVTTVNGRKFYNDSK 250

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    +S   +      G            G    +   DL   +   ++  V  
Sbjct: 251 ATNILATSKRLSAFDKPVILLAG------------GLDRGNGFDDLKPYMK--HVKAVLT 296

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 297 FGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 341


>gi|308048304|ref|YP_003911870.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
 gi|307630494|gb|ADN74796.1| UDP-N-acetylmuramate [Ferrimonas balearica DSM 9799]
          Length = 455

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/366 (19%), Positives = 120/366 (32%), Gaps = 33/366 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML      ++      G     +     ++    D  F + E   
Sbjct: 105 VLAVSGTHGKTTTASMLA---WLLEDNQLAPGFLIGGVPQEFGVSARLGDTPFFVVEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R      RP   +I  +   H   F  + +I      +   +  +G I    
Sbjct: 162 YDSAFFDKRSKFVHYRPRTLLINNLEFDHADIFDSLADIQRQFHHLVRTVPGSGQIIWPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
            D+    + AK        +   G            K   + S  EV L G+   EV  +
Sbjct: 222 ADTAVAEVLAKGCWSEQALLGPGG--------WEARKLAQDGSRFEVLLGGEVLGEVQWN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  QN L  L     +       I +L+ F   + R             TL D+  
Sbjct: 274 LMGDHNIQNALGALAAARHVGVRPADGIASLARFAGPKRRM---ERRGEAAGVTLYDDF- 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISH 403
            A+  +         +     E R +AVL    +  + G    +    L +         
Sbjct: 330 -AHHPTAITTTLAGLRARLGSESRILAVLEPRSNTMKQGVHQATLAASLGQS------DQ 382

Query: 404 VWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            ++    G             + V   +++  L   I +    GD V+V  SN  GF  +
Sbjct: 383 AFVFAPPGLGWDLTAAMAAAPVPVTVRDSVQDLIDAIVAEAQTGDTVLV-MSNG-GFEGI 440

Query: 461 INLLLE 466
            N LLE
Sbjct: 441 HNRLLE 446


>gi|302804608|ref|XP_002984056.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
 gi|300148408|gb|EFJ15068.1| hypothetical protein SELMODRAFT_119501 [Selaginella moellendorffii]
          Length = 492

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 111/356 (31%), Gaps = 17/356 (4%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA  A  +    I A+TG+ GK+T        L          G+               
Sbjct: 118 LAAEAFPK-AVKIAAVTGTNGKSTVTTFTGQILQQAGVRTFIGGNLGTPFSDAACECFKF 176

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D       +        L     P + VI  ++P HL     +E     K  +FE +
Sbjct: 177 PSDDPPYQVTVLEVSSYQLELPGSFSPSVGVILNLSPDHLERHKSMENYGETKCRLFERM 236

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           + +    + + D F   +  K ++   K           D Q R+            + +
Sbjct: 237 DSSKLSIIPHADEFLRKVAYKYNSGSTKAWLGALPGIQLDSQARRAVVV----VPTTKAE 292

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +        +G H AQN      +   L   VD      ++        +      ++ 
Sbjct: 293 ARLYLSGLKAVGSHNAQNAATASLLSLALDVGVDEHKLQAAIGQLTPLPHRMQIVGQDKK 352

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVL 396
               I++S   N  +        + I    + + + +LG + + + +        L+++L
Sbjct: 353 GVLWINDSKATNVDA------AYTGIKGLADRKAVILLGGLAKVLDQDGSLGFKKLSDLL 406

Query: 397 SLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +    +   G     ++  L  +   I    S TM+      +     GD++++
Sbjct: 407 QNH--RAIVTFGAFGEQIEKELKEANVSIPCFRSLTMEDAVARAEKLSKQGDIILL 460


>gi|224368385|ref|YP_002602548.1| MurC [Desulfobacterium autotrophicum HRM2]
 gi|259509767|sp|C0Q8P4|MURC_DESAH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|223691101|gb|ACN14384.1| MurC [Desulfobacterium autotrophicum HRM2]
          Length = 456

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 127/407 (31%), Gaps = 32/407 (7%)

Query: 51  YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           ++GH            ++V +T +  +   +          +     LA   R++     
Sbjct: 54  FNGHR-ADQVKD--VDVLVTSTAISKNNPEVIEAAERSIRTIPRAEMLAELMRIKYA--- 107

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKT+T  M+   L+        +          +         D+ + E   S
Sbjct: 108 IAVSGAHGKTSTTAMIATILNQAGLDPTVVVGGLLKS---IGTNAHHGKGDYIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +++      P IA +T I   HL  +  IE+I     +    +   G   L  D+ 
Sbjct: 165 DGSFLKYA-----PAIAAVTNIDLEHLDFYKDIEDIKDNFVKFINSVPFYGLAVLCLDNE 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIG 289
             + +  +  A       +FG S  AD   R  +       +  V  +    ++  +  G
Sbjct: 220 HIQAILPRITA----RYTTFGLSAQADLAARGIRFEGRRGYFTVVHGKEVLGDITLNLSG 275

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR------GKRYRCALNQGFFTLID 343
            H   N L  + +   L  D     +AL      + R              + G      
Sbjct: 276 KHNISNALAAIAVALELKVDFSVIKEALEQIEGVKRRLEIKGERNSITVVDDYGHHPTEV 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           ++  A          V+    PH   R  A+  +       S    +      S   I  
Sbjct: 336 KTTLAAVREGWPDKRVVVVFQPHRYSRTKALFDEFTRAFYQSDLLFVLPIYAASEQPID- 394

Query: 404 VWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
               G   L L + +    H  V   +  +     +  +L  GD+V+
Sbjct: 395 ----GIDSLKLCNGIQEHGHKNVICVKDFESCLSILSDTLEPGDLVL 437


>gi|253681289|ref|ZP_04862087.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
 gi|253562527|gb|EES91978.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum D str. 1873]
          Length = 458

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 113/384 (29%), Gaps = 57/384 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A +  ITGS GKTTT  ++   L S        G+  N +             D
Sbjct: 111 FIKYCPAKVFGITGSDGKTTTTTLVYNMLKSQGYKTWVGGNIGNPL---FANIERMTKED 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I    +      A++T ++P HL     +EE  +AK  IF+   +  
Sbjct: 168 KVVLELSSFQLMTINEDINC-----ALVTNLSPNHLDVHKDMEEYVNAKKNIFKYQNEND 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D+     L  +  A G    +S  +  N     +  K         +  +    
Sbjct: 223 LLVLNRDNKITNDLVNE--AKGRVKQFSIKEEINNGAYFKNNKL-------FILDKEVCA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L    +V            A +      G   R            
Sbjct: 274 LEEVKLKGMHNVENLLAAFCLVHEDVNVDIMRKVATTF----TGVEHRCEFVRELDGVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRR--IAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++S  ++P    A +    +      G          + E G                 
Sbjct: 330 YNDSIASSPTRTIAGLRAFEKPVILIAGGYDKHIPFEPLAEEGYD--------------- 374

Query: 400 NISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
            I  + L+G     +K A           I ++  E  +      +     GD+V +   
Sbjct: 375 KIKALILTGVTKEKIKKAFDDVIKNKQYKIPIYMLEGFEEAIYKAKEISKMGDIVTLSPA 434

Query: 450 KSS---------NSCGFYRLINLL 464
            +S             F  ++N L
Sbjct: 435 CASFDMFANFEIRGNKFKEIVNNL 458


>gi|34811495|pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811496|pdb|1P31|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) From Haemophilus Influenzae
 gi|34811497|pdb|1P3D|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp.
 gi|34811498|pdb|1P3D|B Chain B, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine
           Ligase (Murc) In Complex With Uma And Anp
          Length = 475

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 139/416 (33%), Gaps = 50/416 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           +I HA +   GA +VVV++ +              IPV        A   LA   R R  
Sbjct: 67  YIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQ-----RA-QXLAEIXRFRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT   ++   +  K     +                     + I E 
Sbjct: 121 ---IAVAGTHGKTTTTAXISXIYTQAKLDPTFVNGGLVKS---AGKNAHLGASRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P ++V+T   P H   +    E+  +   +    L   G     
Sbjct: 175 DESDASFLH-----LQPXVSVVTNXEPDHXDTYEGDFEKXKATYVKFLHNLPFYGLAVXC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            DD     L  K      + + ++G S+ AD+++  ++Q   +  +  +    + + V+ 
Sbjct: 230 ADDPVLXELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLL 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H A N    L +        +  ++AL+ F     R  +    +       + + 
Sbjct: 286 NVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  +   I      +  G G +  V          ++    D  +VLS   +  + 
Sbjct: 346 YGHHPTEVGVTIKA----AREGWGDKRIVXIFQPHRYSRTRDLFDDFVQVLSQ--VDALI 399

Query: 406 -----------LSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                      + G    +L  ++     V          L   +   + DGD+++
Sbjct: 400 XLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLIL 455


>gi|300813921|ref|ZP_07094225.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
 gi|300511984|gb|EFK39180.1| Mur ligase family, glutamate ligase domain protein [Peptoniphilus
           sp. oral taxon 836 str. F0141]
          Length = 261

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 100/258 (38%), Gaps = 13/258 (5%)

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F  IE I + K E+ E L + G    NYD+ + + L  K+        Y     +  
Sbjct: 1   MHLFKTIENIQNTKYELIEDLPEDGIAIFNYDNDYVKPLADKT--KKKTYRYGIKDIEKL 58

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D   +  +   + S   + ++G     +          N+   L   S          + 
Sbjct: 59  DVYAKDIRVNEKGSTFTLGIKGLGE--ISCSSVLLGIHNISNLLAGASAAYVLGFNLEQI 116

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
            +     +    R     +   + +ID+++N+NP   +AA+SV+ +     EG++I +  
Sbjct: 117 KNGIEKVKAVEHRLNIVPSPAGYVVIDDAFNSNPVGFRAALSVIDEFK---EGKKIIITP 173

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA-LKDALPRS----IHVHYSETMD 431
            M E+G + +  +  +   ++     +V L G  + A +K AL  +      +   ++++
Sbjct: 174 GMVELGAIEEEENYKIGIEIAKV-CDYVILVGQKISAPIKRALIDNNFNEDRIFTVKSLN 232

Query: 432 GLFLFIQSSLVDGDVVVV 449
                +      GDVV+ 
Sbjct: 233 DGTSKLVEIAKAGDVVLF 250


>gi|225574517|ref|ZP_03783127.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038248|gb|EEG48494.1| hypothetical protein RUMHYD_02594 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 85/295 (28%), Gaps = 35/295 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PH++ I  I   HL+    +EE    K  I +         LNY+D              
Sbjct: 178 PHVSAILNITEDHLNRHHTMEEYIRVKELITKNQGCDDYCILNYEDEILRKFGENLTPRV 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I         +    +  +     ++  +               +G H  +N +  + + 
Sbjct: 238 IYFSSVRELDEGIFLRDGRIILRLDKKEIPFMK-----TQQLRILGRHNHENAMAAIAMA 292

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +     +   +++  F   E R +              ++S   NP +    I  + + 
Sbjct: 293 YVAGVSAEEICRSVCNFQAVEHRIEFVEEKDGVA---YYNDSKGTNPDAAIKGIQAMDRP 349

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
           +    G            G    S + +  +      + ++ L G     +++A  R   
Sbjct: 350 TLLIGG------------GFDKGSEYDEWIQSFD-GKVRYLVLIGQTREKIQEAANRLGF 396

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                +E ++            GD V++    +S             F   ++ L
Sbjct: 397 HDCILAENLEEAVKICAKKANPGDAVLLSPACASWGQFDNYEQRGNMFKEYVHSL 451


>gi|225375617|ref|ZP_03752838.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
 gi|225212596|gb|EEG94950.1| hypothetical protein ROSEINA2194_01242 [Roseburia inulinivorans DSM
           16841]
          Length = 467

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 123/365 (33%), Gaps = 38/365 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +K  IIAITG+ GKTTT  ++   +++       +     +IG+P T    
Sbjct: 115 ELAYHF---AKGRIIAITGTNGKTTTTSLVGEIMANYFDDVKVV----GNIGIPYTSVAA 167

Query: 157 PVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
               D   + E+    L           P +  I  I P HL+    +E     K  I +
Sbjct: 168 DTTEDTVTVAEISSFQLETTHEYA----PEVTAILNITPDHLNRHHTMECYIETKESITK 223

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                 T  LNY+D         +    +    S  K +   +   +    ++ +     
Sbjct: 224 NQTAGDTCVLNYEDEVLRRFGE-TLQTKVVFFSSKRKLEKGLYLDGEDIFYADGTTDTKV 282

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +         + +G H  +N++  +G+       +D  ++ L  F   E R         
Sbjct: 283 INVN----ELNILGKHNYENVMAAVGMSVSFGVPMDKIVEVLKRFQAVEHRI---EYVTE 335

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +      ++S   NP +    I  +++ +    G            G   QS + +  E 
Sbjct: 336 KRGVKFYNDSKGTNPDAAIQGIRAMNRPTLLIGG------------GYDKQSEYDEWIES 383

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
                +  + L G     + +   +     V   +T +       ++ V GD V++    
Sbjct: 384 FD-GKVKKLVLIGQTKEKIAECAKKHGFEDVILCDTFEEAIDTCYANAVSGDAVLLSPAC 442

Query: 451 SSNSC 455
           +S   
Sbjct: 443 ASWGM 447


>gi|170016886|ref|YP_001727805.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
 gi|226711918|sp|B1MXV9|MURD_LEUCK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|169803743|gb|ACA82361.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           citreum KM20]
          Length = 449

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 138/417 (33%), Gaps = 59/417 (14%)

Query: 70  VNTDMVASIGSLSIPV--FGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTK 123
           ++      + +  IP     V   L      L ++   A       +IA+TGS GKTTT 
Sbjct: 68  IDKSFDFLVKNPGIPYETAIVKKALVLDIPVLTEV-EVALSSFDGRLIAVTGSNGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            ++   L +  +T     +   +IG P++         D  + EL    L  +      +
Sbjct: 127 SLIRDMLKASGQTV----TTAGNIGTPVSEVVGPLTSQDTLLLELSSFQLMGL----PDI 178

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +P IA+IT I   HL          +AK +I +       + LN D +      AK+ A 
Sbjct: 179 KPDIALITNIFANHLDYHGDRAHYVAAKYQITKNQTANQKLILNADGADTPDFAAKTQAQ 238

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +     F +  ++D         ++   + ++ +          +G H  +N+L  + +
Sbjct: 239 VVL----FSRDNSSDM------AWTDGHDLIIEGEHVMPLTAIKLVGPHNLENILAAITV 288

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             I     +     L VF     R    +  L +      ++S   +  + + A+    +
Sbjct: 289 SKIAGVTNEAIKSVLEVFGGVPHRL---QYLLTENGVRYYNDSKATDIEATQTALDSFHE 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-S 421
                       L    + G+           + +L ++  V   G     +     +  
Sbjct: 346 --------PTIWLAGGLDRGDDLTRL------IPNLSHVKLVIAFGETQQKVVAIARQAH 391

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466
             V    ++        SS   GDVV++    +S                 +N L E
Sbjct: 392 KPVITVTSVKEAVPVAISSSSAGDVVLLSPAAASWDQYPNFEVRG---DEFVNELKE 445


>gi|56752359|ref|YP_173060.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81300550|ref|YP_400758.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
 gi|81561305|sp|Q5MZI0|MURC_SYNP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93141289|sp|P95836|MURC_SYNE7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56687318|dbj|BAD80540.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           6301]
 gi|81169431|gb|ABB57771.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 478

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 130/437 (29%), Gaps = 55/437 (12%)

Query: 55  DFILHAVQKG------AGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           +F   AV  G          +  + +   +   L  PVF   D+L AL ++  +      
Sbjct: 67  EFFQEAVSAGQSPQVICSTAIHAHNEEYQAAIDLGCPVFHRSDLLAALLRVYES------ 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++   L         +     +    L            + E 
Sbjct: 121 ---IAVAGTHGKTTTSGLIAYLLYQAGLDPTVVIGGEVN---ALGGNARLGQGRHLVAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           ++  I +IT I   H  ++  +E + S      +   +    +   
Sbjct: 175 DES-----DGSLVKLQAAIGIITNIELDHPDHYCDLEAVISTFKTFSDNCSQLIANWDCP 229

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                           +    S+             +     S  + ++  +   +    
Sbjct: 230 TV-----------RDRLPGTISYSLDPARGADYTVDQVSFRGSGTQARIWERGELLGRIH 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +    A N+   L  ++                   EG  +R+    +      +D+  +
Sbjct: 279 LPLLEAHNLSNALAAIAACRHLGMDFASIREGLAGFEGARRRFEFRGSAQGIQFVDDYAH 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYN----- 400
                     +   QI             L  + +    S++    LAE    +      
Sbjct: 339 HPSELAATLAAARLQIDSGCSRLPEVPKRLVAIFQPHRYSRTQ-AFLAEFAQSFGPADLV 397

Query: 401 -ISHVWLSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            IS ++ +G           L DA+ +   +VHY+  ++ +   +   L  GD+ +    
Sbjct: 398 LISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPDLEAVEQRLHQLLQPGDLALF--- 454

Query: 453 NSCG-FYRLINLLLEEF 468
              G   ++I  LL+ +
Sbjct: 455 LGAGNLNQVIPRLLDHY 471


>gi|254230420|ref|ZP_04923800.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262395261|ref|YP_003287115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|151937053|gb|EDN55931.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
 gi|262338855|gb|ACY52650.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. Ex25]
          Length = 437

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 130/372 (34%), Gaps = 56/372 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GK+T  ++  + + +             +IGVP     +  D D  + EL 
Sbjct: 109 PVIAITGSNGKSTVTDLTGVMVKAAGLDV----GVGGNIGVPALDL-LEQDADLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++   A    ++  H+  + G+ +   AK  IF+             
Sbjct: 164 SFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFDH----------AA 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +       ++       + +FG     D Q    +    ++W+    Q          +
Sbjct: 210 LAVVNRDDQETFPDAEMPLVTFGS----DNQDFGLEVDGNRTWLLDHGQRVVASDELKLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+ L ++     D   A+ AL  +     R    +   +      +++S   
Sbjct: 266 GKHNLSNALVVLALLKAAGVDYHNALNALKNYTGLTHRC---QVVADNQGVKWVNDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +   G
Sbjct: 323 NIASTMAALSGL-----ESTGKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                  D +P        +TM+ +   + S L  GD+V++    +S             
Sbjct: 372 ADGD---DFMPLHESAIRFDTMEDVIQQVSSQLKPGDMVMLSPACASFDQFDNFMARGDA 428

Query: 457 FYRLINLLLEEF 468
           F      L +++
Sbjct: 429 F----AALAQKY 436


>gi|320157425|ref|YP_004189804.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
 gi|319932737|gb|ADV87601.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio vulnificus
           MO6-24/O]
          Length = 442

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 129/367 (35%), Gaps = 47/367 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +  ++         +   +IGVP     +  +V+  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMANA----CGVKCAIGGNIGVPALDL-LEQEVELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     L        A    ++  H+  + G+++   AK  IF+  +        
Sbjct: 162 LSSFQLETTSSLHL----VAAAFLNLSEDHMDRYQGMDDYRQAKLRIFQHAKHGVVNR-- 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 +     SH   +  + +FG     D +         +SW+    Q         
Sbjct: 216 ---DDRQTYPETSHGQQLLALVTFGS----DDKEFGVMSHQGESWLSYNQQPILASRELK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+L+ L +++    D    + AL  +     R    +   +      +++S 
Sbjct: 269 LVGQHNVANVLVVLALLTCAGIDYRKGLSALKSYTGLTHRC---QVVADNRGIKWVNDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS +AA+S L+       G+   ++G   +  + S      L  +L+  N+  +  
Sbjct: 326 ATNLASTQAALSGLNC-----AGKLYLLVGGDGKGADFSP-----LKPILAQLNL-QLCC 374

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        E M+ +   I   L  GD+V++    +S           
Sbjct: 375 FGADGDQF---MPLHASATRFERMEDVIEHISPQLQSGDMVMLSPACASFDQFSNFMARG 431

Query: 455 CGFYRLI 461
             F  L 
Sbjct: 432 DRFAELA 438


>gi|313904465|ref|ZP_07837842.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
 gi|313470801|gb|EFR66126.1| UDP-N-acetylmuramate/alanine ligase [Eubacterium cellulosolvens 6]
          Length = 462

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 144/409 (35%), Gaps = 45/409 (11%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A+    +IP+          L ++  +     K   I ++G+ GKTTT 
Sbjct: 76  TAAIHPSNPEYAAAVEKNIPLL----TRAQLLGEMMKSY----KIP-ICVSGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGIFELGMSHLGEIRFLTHLV 182
            M +  L +  K      + +    +PL      + + D  + E       E        
Sbjct: 127 SMASHVLMAADKN----PTISVGGILPLIKGNYHIGNTDTFLMEAC-----EYTNSFLDF 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P I++I  I   HL  F  +E+I ++  +  E L   GT+ +N DD  F+++       
Sbjct: 178 FPKISIILDIDADHLDFFKDLEDIRNSFRKFAELLPADGTLIINADDPAFKMITKDLPCE 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            I    S   +  AD         +    +       +  +   G       N+   L +
Sbjct: 238 VITYSLSNIGNYTADMITYDELGHASFRALYKGEPIGNFALQVPGSH-----NVSNALAV 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMK 354
           +++       A      F    G  +R+         T+ID+  +         N A   
Sbjct: 293 IALAEKLGIDADTIQKGFDSFHGTNRRFEQKGEMNGATVIDDYAHHPTEIKATLNTARRV 352

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
              ++     PH   R  ++L    E   LS + H+ LA++ +   +    + G     L
Sbjct: 353 PHKTIWCVFQPHTYTRTKSLLPQFAE--ALSIADHVVLADIYAARELD---IYGISSKDL 407

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           ++ + +      Y  +   +  ++++++ +GD +++      G   ++ 
Sbjct: 408 QNEIIKLGTDCDYFPSFAEIEAYLRANVKEGD-LLIT----MGAGNIVQ 451


>gi|227891044|ref|ZP_04008849.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
 gi|227867133|gb|EEJ74554.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius ATCC 11741]
          Length = 458

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 93/325 (28%), Gaps = 47/325 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T I  AH+      E   +AK  I     + 
Sbjct: 163 DTIVTELSSFQLLGITEYH----PKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTED 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D+  ++ L  +S A              +     K        ++  +     
Sbjct: 219 DYFVVNWDNEEWQELSQRSKAK---------IVPFSRLGKSKDGAYVADGYLFYREDKIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  I     +   + L+ F     R    +         
Sbjct: 270 PVDDIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFSGVRHRT---QYVTTLNGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + +         +  G    + +L    + G   +     L        
Sbjct: 327 FYNDSKATNMEATEK--------ALAGFNNPVVLLAGGLDRGFTFEKLEPSL-----KNK 373

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV---KSS--- 452
           +  + + G     +  A   +      +T D             +GDV+++    +S   
Sbjct: 374 VHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSNEGDVILLSPACASWDQ 433

Query: 453 ------NSCGF----YRLINLLLEE 467
                     F     +L   L E+
Sbjct: 434 WPTFEVRGDKFIEAVEKLTKELEEK 458


>gi|197116887|ref|YP_002137314.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
 gi|226711912|sp|B5EBP9|MURD_GEOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197086247|gb|ACH37518.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 113/354 (31%), Gaps = 34/354 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLAR 155
           +LA       KA ++AITG+ GKTTT  +      +             +IG P + LA 
Sbjct: 100 ELASWF---IKAPMVAITGTNGKTTTTTLTGEIFKA----CGFETFVGGNIGNPLIELAE 152

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +V   + EL    L  +       RP +AV+  I   HL  +   +E   AK  IFE
Sbjct: 153 SGQEVSRVVVELSSFQLEGVE----SFRPDVAVLLNITEDHLDRYHSFQEYIDAKLRIFE 208

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    LN DD       +K  A            +   ++        +   +   
Sbjct: 209 NQTADDFAVLNIDDPLVAACASKLKAQLFPMSRLHELEEGISYRDGFITFSHKGKVLRFG 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +G  ++ V          N+   +  ++           A       +G   R      
Sbjct: 269 TEGFKLKGV---------HNLDNIMASLASTLLMRCDGDCAYEAVKNFKGLPHRMELVEE 319

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  ++S   N  S+  ++           G            G+     +  LA +
Sbjct: 320 IDGVAYYEDSKGTNVGSVVKSLESFDSGITLIAG------------GKDKGGSYEPLAPL 367

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +    +SH+ L G     + +AL      H +ET++      +     G VV+ 
Sbjct: 368 V-ESRVSHLVLIGEAKARMNEALGSLTDTHLAETLEEAVEISRRLTKPGGVVLF 420


>gi|53803428|ref|YP_114842.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
 gi|59798159|sp|Q604V8|MURC_METCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|53757189|gb|AAU91480.1| UDP-N-acetylmuramate--alanine ligase [Methylococcus capsulatus str.
           Bath]
          Length = 472

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 128/364 (35%), Gaps = 32/364 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R R     +A+ G+ GKTTT  +    L+        +     +         + 
Sbjct: 104 LAELMRFRYG---VAVAGTHGKTTTTSLTASILAEGGLDPTFVIGGRLN--------SVG 152

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEG 216
            +   G  E  ++   E       ++P IAV+T I   H+  +            E    
Sbjct: 153 ANAQLGQGEYLVAEADESDASFLHLQPMIAVVTNIDQDHMGTYGNDFGRLKDAFVEFLHH 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   L  +D     +  +          ++G+ +  D +    ++   QS   V  
Sbjct: 213 VPFYGAAVLCAEDPGVRDILPRLSKP----YRTYGEREGVDIRAVGIQRLGLQSRFSVLR 268

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           QG    E+  +  GYH   N L  +G+ + L        +AL+ F     R +   C   
Sbjct: 269 QGAEPLEITLNLPGYHNILNALAAIGVATELGVADAVIQRALAGFRGIGRRFQINACLNF 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                   + Y  +P+ + A +       P        V+         ++    D  +V
Sbjct: 329 GDGEITFVDDYGHHPSELAATLDSARNAWPDR----RLVVVFQPHRYTRTRDLFEDFVQV 384

Query: 396 LSLYNIS---HVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDG 444
           LS  ++     V+ +G   +A  D   L R+I V       ++ET + +F  + + L  G
Sbjct: 385 LSRVDVLILLEVYSAGEAPIAGADGRSLSRAIRVRGQIDPIFAETPEEVFDILPNVLKPG 444

Query: 445 DVVV 448
           DVV+
Sbjct: 445 DVVM 448


>gi|332527086|ref|ZP_08403166.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
 gi|332111517|gb|EGJ11499.1| UDP-N-acetylmuramate--L-alanine ligase [Rubrivivax benzoatilyticus
           JA2]
          Length = 473

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 72/427 (16%), Positives = 139/427 (32%), Gaps = 47/427 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GHD     ++ GA  VV++T +      +       IPV         +  LA   RLR 
Sbjct: 56  GHDAAN--IE-GADAVVISTAVKGDNPEVITARARRIPVV----PRAVM--LAELMRLRR 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+   +    +        +           ++ + E
Sbjct: 107 G---IAIAGTHGKTTTTSLVASVLAEAGRDPTFVIGGKL---LSAGANSRLGSGEYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFL 225
              S           + P +AV+T I   H+  +   +  + SA  +    +   G   +
Sbjct: 161 ADES-----DASFLNLMPIMAVVTNIDADHMETYGHDLSRLRSAFVDFIHRMPFYGAAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----S 280
             DD     +      +  + + S+G  ++   +    +            +        
Sbjct: 216 CGDDPGVRAI----MPMLSRPVVSYGLGEDVQVRAVDVEALPGGRMRFTAQRRNGVALPD 271

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           + +  +  G H   N L  + +   L    +  ++AL+ F     R +R+          
Sbjct: 272 LSITLNLPGVHNVCNALAAIAVAMELELPDEPTVRALAGFTGVGRRFQRWGELPVSAARG 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLS 397
               +   +     A ++ +   +      R  VL         ++    D   +     
Sbjct: 332 GGSFTLIDDYGHHPAEMAAVVAAARGAFPGRRLVLAFQPHRYTRTRDCFEDFVKVMGSAD 391

Query: 398 LYNISHVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ V+ +G          AL  AL  +  V   + + +  L   I     DGDVV+ 
Sbjct: 392 AVLLTEVYAAGEAPIVAADGRALARALRVAGKVDPVFVDAIAELPQAIAEFAQDGDVVIA 451

Query: 450 KSSNSCG 456
             + S G
Sbjct: 452 MGAGSMG 458


>gi|300690405|ref|YP_003751400.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
 gi|299077465|emb|CBJ50090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Ralstonia solanacearum
           PSI07]
          Length = 461

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 105/364 (28%), Gaps = 24/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  ML   L                 GVP     +      DF + E 
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILQDAGYDP-----GFLVGGVPRNFGLSARLTASDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                            RP  A++  +   H   F  +  I +    +   +   G + +
Sbjct: 160 DEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAIETQFHHLVRTVPGQGRLLV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +   + + A+      +    FG    A + +       + S+  V        V  
Sbjct: 220 NGREESLKRVLARGCWSEAE---FFGAEDGAGWAIAD--LGDDDSFDVVLDGQVQGRVHW 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLI 342
              G H   N L  +     +      AI++L+ F   + R +             F   
Sbjct: 275 PLQGDHNRMNALAAIAAARHVGVPPAQAIESLARFENVKRRMEVRGTVDGVTVYDDFAHH 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
             +       ++  +     ++          LG M +    S      +    +     
Sbjct: 335 PTAIRTTIDGLRRRVGAARILAVLEPRSNTMKLGVMKQQLPASLEGADQVFAYGAAGGRD 394

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +              P          +  L   + ++   GD V+V  SN  GF  +  
Sbjct: 395 AI-----GWDLAGALAPLGERAQAFSDLGTLVEAVTAAARPGDHVLV-MSNG-GFGGVHQ 447

Query: 463 LLLE 466
            LL+
Sbjct: 448 KLLD 451


>gi|295835883|ref|ZP_06822816.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
 gi|295825750|gb|EFG64450.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. SPB74]
          Length = 469

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 81/418 (19%), Positives = 144/418 (34%), Gaps = 45/418 (10%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAV 100
           G     GHD    A       VVV++ +      L       IPV    D L AL     
Sbjct: 54  GATVHLGHDAAHLAEDT--SAVVVSSAIREDNPELVRARELGIPVVHRSDALAAL----- 106

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
                +    +A+ G+ GKTTT  ML ++L+++    +     +                
Sbjct: 107 ----MTGTRPLAVAGTHGKTTTTSMLAVSLTTLGLDPSYAIGGDLD---APGSNAHHGTG 159

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E   S         H   P +AV+  +   H +N++ IEEI  +       +   
Sbjct: 160 EIFVAEADES-----DRSFHTYAPEVAVVLNVELDHHANYASIEEIYESFETFVGKIVPG 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           GT+ ++ D      L  +       TI ++G +++AD ++RK       S + V + GK 
Sbjct: 215 GTLVISADHEGARELTRRVRERADLTIVTYGSAEDADVRVRKVSPRGLTSEVTVAIDGKL 274

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H A N +  L     L   +     AL  +   + R +       +    
Sbjct: 275 LTFTVSVPGSHYAHNAVAALVAGVSLGVPLHNLASALRSYTGVKRRLQ----LKGEAAGV 330

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + +SY  +P  M A +     +    EGR + V      +   +Q    ++ + L+L +
Sbjct: 331 QVVDSYAHHPTEMAADLEA---MRGAVEGRILVVFQP--HLFSRTQELGKEMGQALALAD 385

Query: 401 ISHVWLSGFHVLALKDALPRS----------IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            S V           + +               V      D +   +      GD+V+
Sbjct: 386 SSLVLDIYPAREDPIEGVTSELIIAAGRAAGADVSPLHAKDEVAEAVAGMAKPGDLVL 443


>gi|213691785|ref|YP_002322371.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523246|gb|ACJ51993.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457878|dbj|BAJ68499.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis ATCC 15697]
          Length = 517

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 124/429 (28%), Gaps = 46/429 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFIL 58
           L + IQG      P           GI+ D+R + P       KG  +     +G   I 
Sbjct: 18  LREIIQGDVWTDDPARIASTDEPFAGITYDTRKVTPGTL-LCCKG-RFKAEYLNG---ID 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
            A   G    V  T+  A+      P   V+D   A++ L+ A     +++ T+I +TG+
Sbjct: 73  EA---GLAAYVAETEYSAATA---APGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGT 126

Query: 117 VGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            GKTTT       ++                         +      +   RM  +    
Sbjct: 127 KGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 164 IFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
             E   + +S         + +   +A    I+P H+S       E+    K +I    +
Sbjct: 187 GMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAK 246

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  +          A +             +      +  W   +  +   +    
Sbjct: 247 SLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++   H  I              ++           AL         G+  +    Q  
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRMEQFRDPQSN 366

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  N AS+ A +  + +       R   V G     G  +     ++ E    
Sbjct: 367 TLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAEN 422

Query: 399 YNISHVWLS 407
              + ++ +
Sbjct: 423 RIANFIFTA 431


>gi|15643006|ref|NP_228048.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
 gi|30316146|sp|Q9WY76|MURD_THEMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4980732|gb|AAD35325.1|AE001707_12 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermotoga
           maritima MSB8]
          Length = 430

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 102/367 (27%), Gaps = 59/367 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ ITG+ GK+T   ++   L               + G P  +  +  + D+ + E
Sbjct: 101 PKKVVGITGTDGKSTATALMYHVL----SGRGFKTFLGGNFGTP-AVEALEGEYDYYVLE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           +    L               ++  I+  HL   S  +E   +K +      +      N
Sbjct: 156 MSSFQLFWSERPYL----SNFLVLNISEDHLDWHSSFKEYVDSKLKPAFLQTEGDLFVYN 211

Query: 227 YDDSFFELLKA-KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                   L+  +S  +   T  +F   K    + +K+       +              
Sbjct: 212 KHIERLRNLEGVRSRKIPFWTDENFATEKELIVRGKKYTLPGNYPYQMR----------- 260

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                         L +  +     +     L +    +    R             ++S
Sbjct: 261 -----------ENILAVSVLYMEMFNELESFLELLRDFKPLPHRMEYLGQIDGRHFYNDS 309

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              +  ++  A+S   +           V+  MC +G   +  +  L    +   + H+ 
Sbjct: 310 KATSTHAVLGALSNFDK-----------VVLIMCGIG---KKENYSLFVEKASPKLKHLI 355

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------N 453
           + G     L       I     E M+  F         GDV+++    +S          
Sbjct: 356 MFGEISKELAP-FVGKIPHSIVENMEEAFEKAMEVSEKGDVILLSPGGASFDMYENYAKR 414

Query: 454 SCGFYRL 460
              F  +
Sbjct: 415 GEHFREI 421


>gi|326390852|ref|ZP_08212404.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993111|gb|EGD51551.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 464

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 137/403 (33%), Gaps = 47/403 (11%)

Query: 64  GAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV       +         L+IP     D    L  +    +       IA+ GS 
Sbjct: 67  GADLVVYTAAIHEDNPEYQKAKELNIPTI---DRATLLGLIMKKYKYG-----IAVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +      +      +        +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVILDGMGFDPTVLVGGEVDV--------IGGNVRVGNSEYFLTEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD+    +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFANLVPPDGFVVACKDDANTMYVV- 229

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQN 295
                  K I ++G  +++D++ +      +    +     +           G H   N
Sbjct: 230 ---NGLNKNIVTYGIYQDSDWKAKNISFDDKGCAIFDVYYKEEYMGNFKLSIPGKHNVYN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  L +  ++  D+  A   L+ F     R +             I + Y  +PA +KA
Sbjct: 287 ALAALAVSHLVGIDIKKASHYLTEFKGTHRRFE----IKGIVDGITIVDDYAHHPAEIKA 342

Query: 356 AISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            +           +    PH   R  ++L D    G    +  I +A++ +        +
Sbjct: 343 TLEAAKNYPHKRIICIFQPHTYSRTKSLLNDFA--GSFDNADKIIIADIYAAREKDTGIV 400

Query: 407 SGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L + +  R   V Y +  D +  ++  +   GD+V+
Sbjct: 401 ---SSKDLVELISQRGKDVLYLKDFDSIVEYLNKNAKTGDLVL 440


>gi|28572692|ref|NP_789472.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
 gi|62900691|sp|Q83HK0|MURD_TROW8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28410824|emb|CAD67210.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei TW08/27]
          Length = 480

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 113/374 (30%), Gaps = 33/374 (8%)

Query: 97  KLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLA 154
           +LA   R +      I ITG+ GKTTT  +    L+          +   +IG P+    
Sbjct: 108 ELAWRVRDKVNTCPWILITGTNGKTTTALLTGSMLAKDGARV----AVCGNIGTPVLDAV 163

Query: 155 RMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           R P   D+ + EL    L  +       V+   +    +   HL      E    AK+ +
Sbjct: 164 RNPKGFDYFVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYRAKSRV 223

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G        L+  D   + +  ++          FG       Q+             
Sbjct: 224 YHGTTGFCVYNLD--DEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFL 281

Query: 274 VQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +  ++E+            M   +   L  V++  +     +              R
Sbjct: 282 SARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEFCLSPHR 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +     +++S   NP ++ A++S  S++     G    V     ++  +   F+
Sbjct: 342 TEVVAKEMGVMWVNDSKATNPHAVIASLSNFSRVILIFGGLMKGV-----DVSGIFDRFY 396

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDV 446
                      I  V + G +  +    +     V   ++   M             GD 
Sbjct: 397 ET---------IKAVVVIGKN-QSFVGNIKCKKIVCIPDSNDPMSEAVAAADLLATPGDT 446

Query: 447 VVVK--SSNSCGFY 458
           V++    S+   F 
Sbjct: 447 VLLSPGGSSFDQFE 460


>gi|28493193|ref|NP_787354.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Tropheryma
           whipplei str. Twist]
 gi|28476234|gb|AAO44323.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Tropheryma
           whipplei str. Twist]
          Length = 528

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 113/374 (30%), Gaps = 33/374 (8%)

Query: 97  KLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLA 154
           +LA   R +      I ITG+ GKTTT  +    L+          +   +IG P+    
Sbjct: 156 ELAWRVRDKVNTCPWILITGTNGKTTTALLTGSMLAKDGARV----AVCGNIGTPVLDAV 211

Query: 155 RMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           R P   D+ + EL    L  +       V+   +    +   HL      E    AK+ +
Sbjct: 212 RNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRV 271

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G        L+  D   + +  ++          FG       Q+             
Sbjct: 272 YHGTTGFCVYNLD--DEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFL 329

Query: 274 VQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +  ++E+            M   +   L  V++  +     +              R
Sbjct: 330 SARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEFCLSPHR 389

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +     +++S   NP ++ A++S  S++     G    V     ++  +   F+
Sbjct: 390 TEVVAKEMGVMWVNDSKATNPHAVIASLSNFSRVILIFGGLMKGV-----DVSGIFDRFY 444

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDV 446
                      I  V + G +  +    +     V   ++   M             GD 
Sbjct: 445 ET---------IKAVVVIGKN-QSFVGNIKCKKIVCIPDSNDPMSEAVAAADLLATPGDT 494

Query: 447 VVVK--SSNSCGFY 458
           V++    S+   F 
Sbjct: 495 VLLSPGGSSFDQFE 508


>gi|304558043|gb|ADM40707.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda FL6-60]
          Length = 487

 Score = 57.9 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 138/408 (33%), Gaps = 49/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 79  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   L  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S++AD ++ +++QC  + ++   +     + V  +  G H A N 
Sbjct: 242 RV----GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
                + S    D +  ++AL  F     R         +   N+    ++ + Y  +P 
Sbjct: 298 AAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGKVMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDR----RLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     +L   +     +          L   +   L +GD+++
Sbjct: 414 EHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLIL 461


>gi|319900364|ref|YP_004160092.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
 gi|319415395|gb|ADV42506.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacteroides
           helcogenes P 36-108]
          Length = 444

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 114/346 (32%), Gaps = 32/346 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A ++ ITGS GKTTT  ++     S             +IG  L L       D+ I E
Sbjct: 101 DAKMVCITGSNGKTTTTSLIYHIFKSAGLNV----GLAGNIGNSLALQVATEKHDYYIIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L       +  R +IAV+  I P HL  +   ++    AK  I            
Sbjct: 157 LSSFQLD----NMYRFRANIAVLMNITPDHLDRYDHCMQNYIDAKFRITRNQTPDDAFIY 212

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD   +   AK         ++  K   A   +   +            Q        
Sbjct: 213 WNDDPIIKRELAKHGLKAHLYPFASVKEDGAIAYVEDGEIEINAPIAFNMEQE-----EL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L      ++   + +   KALS F   E R ++            I++S
Sbjct: 268 ALRGTHNLYNSLAAGISANLAGIEKEYIRKALSDFKGVEHRLEKVCDVRGIH---FINDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+  ++        + + +LG     G+   + + ++ +++     + V+
Sbjct: 325 KATNVNSCWYALQSMTT-------KTVLILG-----GKDKGNDYTEIEDLVREKCSALVY 372

Query: 406 LSGFHVLALKDALPR-SIHVHYSET-MDGLFLFIQSSLVDGDVVVV 449
           L G H   L     R  + V   +T M             G+ +++
Sbjct: 373 L-GLHNEKLHGFFDRLGLPVADVQTGMKDAVDAAFRLAKKGETILL 417


>gi|269137996|ref|YP_003294696.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983656|gb|ACY83485.1| UDP-N-acetylmuramate--L-alanine ligase [Edwardsiella tarda EIB202]
          Length = 491

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 138/408 (33%), Gaps = 49/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 83  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 134 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   L  DD     L  
Sbjct: 189 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S++AD ++ +++QC  + ++   +     + V  +  G H A N 
Sbjct: 246 RV----GRQVTTYGFSQDADVRIEEYRQCGAQGTFFLCRQDRPRLAVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
                + S    D +  ++AL  F     R         +   N+    ++ + Y  +P 
Sbjct: 302 AAAAAVASEEGIDDEAILRALGGFQGTGRRFDFLGEFSLQHVNNKPGKVMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 362 EVDATIKAARAGWPDR----RLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAG 417

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     +L   +     +          L   +   L +GD+++
Sbjct: 418 EHPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQTLAQFLQEGDLIL 465


>gi|297581386|ref|ZP_06943309.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297534224|gb|EFH73062.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 451

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/369 (15%), Positives = 114/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V  +G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLFKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I       D ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQADDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|62900690|sp|Q83GN2|MURD_TROWT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 480

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 113/374 (30%), Gaps = 33/374 (8%)

Query: 97  KLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLA 154
           +LA   R +      I ITG+ GKTTT  +    L+          +   +IG P+    
Sbjct: 108 ELAWRVRDKVNTCPWILITGTNGKTTTALLTGSMLAKDGARV----AVCGNIGTPVLDAV 163

Query: 155 RMPVDVDFGIFELGMSHLGEI-RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           R P   D+ + EL    L  +       V+   +    +   HL      E    AK+ +
Sbjct: 164 RNPKGFDYLVVELSSFQLSLLPMHGNGAVKGFSSACVNLDEDHLEWHGAKELYYCAKSRV 223

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           + G        L+  D   + +  ++          FG       Q+             
Sbjct: 224 YHGTTGFCVYNLD--DEETKKMVEQACVARNVRAIGFGLCVPDVGQVGIVDGILCDRAFL 281

Query: 274 VQLQGKSMEVV----HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
              +  ++E+            M   +   L  V++  +     +              R
Sbjct: 282 SARKDSALEITSVEKLEKNKLSMRHIISDVLCAVALARSVETNPLSISRALDEFCLSPHR 341

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +     +++S   NP ++ A++S  S++     G    V     ++  +   F+
Sbjct: 342 TEVVAKEMGVMWVNDSKATNPHAVIASLSNFSRVILIFGGLMKGV-----DVSGIFDRFY 396

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGDV 446
                      I  V + G +  +    +     V   ++   M             GD 
Sbjct: 397 ET---------IKAVVVIGKN-QSFVGNIKCKKIVCIPDSNDPMSEAVAAADLLATPGDT 446

Query: 447 VVVK--SSNSCGFY 458
           V++    S+   F 
Sbjct: 447 VLLSPGGSSFDQFE 460


>gi|23335414|ref|ZP_00120650.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium
           longum DJO10A]
 gi|23465917|ref|NP_696520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum NCC2705]
 gi|189439084|ref|YP_001954165.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum DJO10A]
 gi|227547592|ref|ZP_03977641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|317483518|ref|ZP_07942503.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322689471|ref|YP_004209205.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
 gi|46577072|sp|Q8G4M3|MURE_BIFLO RecName: Full=UDP-N-acetylmuramyl-tripeptide synthetase; AltName:
           Full=UDP-MurNAc-tripeptide synthetase
 gi|23326625|gb|AAN25156.1| MurE [Bifidobacterium longum NCC2705]
 gi|189427519|gb|ACD97667.1| UDP-N-acetylmuramyl tripeptide synthase [Bifidobacterium longum
           DJO10A]
 gi|227211847|gb|EEI79743.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516694|emb|CBK70310.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium longum
           subsp. longum F8]
 gi|316915042|gb|EFV36479.1| Mur ligase middle domain-containing protein [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320460807|dbj|BAJ71427.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis 157F]
          Length = 517

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 121/428 (28%), Gaps = 44/428 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKG----PHYDGHDFILH 59
           L + IQG      P           GI+ D+R + P       KG     + +G   I  
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPGTL-LCCKGQFKAEYLNG---IDE 73

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A   G    V  T+  A+  +   P   V+D   A++ L+ A     +++ T+I +TG+ 
Sbjct: 74  A---GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTK 127

Query: 118 GKTTTKEMLTIAL----------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           GKTTT       +                     TY               + R   D  
Sbjct: 128 GKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNG 187

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219
                + +S         + +   +A    I+P H+S       E+    K +I    + 
Sbjct: 188 MKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIVNAKS 247

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +            +             +      +  W      +   +    +
Sbjct: 248 LVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAHASFHIADGDQ 307

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++   H  I              ++           AL         G+  +    Q   
Sbjct: 308 ALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIAGRMEQFRDPQSNT 367

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I + Y  N AS+ A +  + +       R   V G     G  +     ++ E     
Sbjct: 368 LAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAENR 423

Query: 400 NISHVWLS 407
             + ++ +
Sbjct: 424 IANFIFTA 431


>gi|218886057|ref|YP_002435378.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757011|gb|ACL07910.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 455

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 115/386 (29%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               VA+     IP+         +  LA   RLR+    IAI G+ GKTTT  +     
Sbjct: 78  ENPEVAAARKRGIPII----PRAEM--LAELMRLRTG---IAIAGTHGKTTTTSLTAAIF 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I     +            D  + I E   S           + P + V+T
Sbjct: 129 DEAGTDPTVIIGGRLN---AYGANARLGDGAYLIAEADES-----DGSFLCLFPIVTVVT 180

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+ ++   + I  A  +    +   G   +  DD     L  +     +    ++
Sbjct: 181 NVDMDHMDHYPSQQAIDDAFVDFMNKVPFYGMNVVCGDDPGVRRLLPRVKRPVV----TY 236

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  +    +           +  +       +V     G H   N L  +G+        
Sbjct: 237 GFGEGNAIRAEVLACADSSLFNVIVNGDDIGQVRLAQPGRHNILNALAAIGVALECDIAP 296

Query: 311 DTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +  +  L+ F     R +R           + G       +  A          ++    
Sbjct: 297 EKIVAGLAKFGGVGRRFERKGERDGVLVVDDYGHHPAEIAATLATARQCFPHRRLVVVFQ 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A+ G+ C++ +      +      S   I      G    +L   + +    
Sbjct: 357 PHRFSRTQALFGEFCKVFDGVDKLLLTEIYPASEKPI-----PGVSGQSLAQGIRQVSKT 411

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V Y +  D +   +   L  GD+++
Sbjct: 412 DVTYHQDFDSVLAALPEVLQPGDLLL 437


>gi|184155049|ref|YP_001843389.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
 gi|226711916|sp|B2GB77|MURD_LACF3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|183226393|dbj|BAG26909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           fermentum IFO 3956]
          Length = 458

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 47/377 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VD 161
                  +I++TGS GKTTT  ++   ++           Y  +IGV  +     +   D
Sbjct: 107 YQVFAGHLISVTGSNGKTTTTTLIEQMVA---MGNPHRVEYAGNIGVSFSKVAEELGPDD 163

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 164 TIVTEASSFQLLGA----PTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A  +                 +     +   +  + +    
Sbjct: 220 YLVINWDKEEWQKLAKRTNATVVPFSR---------LAKSQEGAYQKGGDLYWRQERIMA 270

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG    +N L  +    +     +  ++ L+ F     R    +  L+      
Sbjct: 271 AKDVVLIGPQNVENALAAIAAAKLSGVANEAIVRVLTTFTGVRHRL---QYVLDYEGRRF 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + +  + + A+    Q      G            G         L       ++
Sbjct: 328 YNDSKSTDIEATEVALQGFEQPVILLAG------------GLDRGYTFERLVPYFRE-HV 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVK---SS---- 452
             + + G     +K A  ++      E+ D              GDV+++    +S    
Sbjct: 375 KALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILLSPANASWDQF 434

Query: 453 -----NSCGFYRLINLL 464
                    F   +  L
Sbjct: 435 PNFEVRGDRFIEAVEQL 451


>gi|115372803|ref|ZP_01460109.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823487|ref|YP_003955845.1| UDP-n-acetylmuramate--l-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370284|gb|EAU69213.1| UDP-N-acetylmuramate--alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396559|gb|ADO74018.1| UDP-N-acetylmuramate--L-alanine ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 475

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 140/404 (34%), Gaps = 49/404 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  AV+K       +   V +     IPV         +  LA   RL+     +A+ GS
Sbjct: 82  ISSAVKK-------DNPEVVAARQRKIPVI----PRAEM--LAELMRLKYA---VAVAGS 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   LS+       +     ++        +  +   G  EL +    E  
Sbjct: 126 HGKTTTTSMVATVLSAAGLDPTAVVGGKVNV--------LDSNAKLGKSELMVVEADESD 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IAV+T I P H+ ++  ++ + +A  E    +   G   L  D    + L 
Sbjct: 178 GSFLKLHPSIAVVTNIDPEHMDHYGTLDVLQTAFVEFCNRVPFYGLNVLCLDHPNVQALL 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
            +     +    ++G S  AD++L         +  +  +      E     +G H A N
Sbjct: 238 PRLEKRAV----TYGSSHMADYRLEGVTLEGFTTRFQAFRRDEPLGEFRVRMVGAHNALN 293

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +   +D    AL+ F   + R               + + Y  +P  + A
Sbjct: 294 ALAVIAVAEEMEIPLDMVRGALAEFGGVQRRFTVRGEVGG----VTVVDDYGHHPTEVMA 349

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV- 411
            ++            R  V+         +     + A   +  ++   + V+ +G    
Sbjct: 350 TLA-----GARKAFGRRLVVAFQPHRYTRTHDLLKEFATSFNDSDVLFVTSVYGAGEEPI 404

Query: 412 -----LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
                  L +A+    H  V + E    L   +   +++GD+V+
Sbjct: 405 PGATGDVLAEAIRDHGHRDVTFVEKRMDLPAALAQRVMEGDLVL 448


>gi|254796629|ref|YP_003081465.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
 gi|254589866|gb|ACT69228.1| Mur ligase middle domain family [Neorickettsia risticii str.
           Illinois]
          Length = 470

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/471 (12%), Positives = 127/471 (26%), Gaps = 41/471 (8%)

Query: 1   MNPLWTFHDL-LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M  L+    + L+  +G          +  I+ D + +     F+A        H  I  
Sbjct: 1   MAALY--EQICLEISKGR---------IKNITSDPQKVGKDFLFYA-PSEKEHAH--IRE 46

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+ +GA  ++ N           +  F         + +      +    + AI G+ G+
Sbjct: 47  AINRGAKSILTNQKY-EECLEQGVDFFVHAQPQQIYHGICSFMWKKQPTFVCAIIGTSGR 105

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
            +     +   +   K    +   N     P+   ++  + D  I +    +        
Sbjct: 106 KSVGHFFSQVCTLAGKKAVTLSVSNE----PMDTPKLWQEKDHLISDAADMYNILDDLAE 161

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +      I+  A         +   A+A   +     +          +   LL    
Sbjct: 162 RRIEYCCLAISAAAIESRMI-DSVNLKAAAFTNLLRDDLEQPEDVDRRLQTKIRLLSEIL 220

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
              GI  +    +      Q    K+          +Q  S      G    M       
Sbjct: 221 PENGIMVLPVASEYTTRIMQHCPNKKVCTYGRATSDIQLISQLPTQKGQILTMKILGKEM 280

Query: 300 L---GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN-------AN 349
           +    I+     +       L++    +     +        +    E Y          
Sbjct: 281 VVHTNILGKFQGNNLVTAMGLAISCGIDPSSIEHEQISPLAGYMEFLEDYGEERKIMTDC 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +      +L  I  H     + ++    E  E   +    +A++ +      ++ S  
Sbjct: 341 AQTPSELHDLLLSIKWHFPYNDVTLVLRCSENYEARNTL--KMAKIAAKMVNRIIFTSDS 398

Query: 410 HVLAL-----KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV---VKSS 452
           H   L     ++ +         E       +  ++    +++V   VKSS
Sbjct: 399 HGSMLTEKTRRELMSCCPKAIEIEDRKKAMEYAINNCKPSEIIVMQGVKSS 449


>gi|227514825|ref|ZP_03944874.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086815|gb|EEI22127.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           fermentum ATCC 14931]
 gi|299783027|gb|ADJ41025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus fermentum
           CECT 5716]
          Length = 466

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 115/377 (30%), Gaps = 47/377 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VD 161
                  +I++TGS GKTTT  ++   ++           Y  +IGV  +     +   D
Sbjct: 115 YQVFAGHLISVTGSNGKTTTTTLIEQMVA---MGNPHRVEYAGNIGVSFSKVAEELGPDD 171

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E     L          RPHIAVIT I   HL      +    AK  I     K  
Sbjct: 172 TIVTEASSFQLLGA----PTYRPHIAVITNIFANHLDYHKTRQNYIDAKLGITRNQTKDD 227

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+D   ++ L  +++A  +                 +     +   +  + +    
Sbjct: 228 YLVINWDKEEWQKLAKRTNATVVPFSR---------LAKSQEGAYQKGGDLYWRQERIMA 278

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 IG    +N L  +    +     +  ++ L+ F     R    +  L+      
Sbjct: 279 AKDVVLIGPQNVENALAAIAAAKLSGVANEAIVRVLTTFTGVRHRL---QYVLDYEGRRF 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S + +  + + A+    Q      G            G         L       ++
Sbjct: 336 YNDSKSTDIEATEVALQGFEQPVILLAG------------GLDRGYTFERLVPYFRE-HV 382

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVVK---SS---- 452
             + + G     +K A  ++      E+ D              GDV+++    +S    
Sbjct: 383 KALIVFGESKDKMKAAGEQAGVKTIVESTDAVTAVPEAWRLSEPGDVILLSPANASWDQF 442

Query: 453 -----NSCGFYRLINLL 464
                    F   +  L
Sbjct: 443 PNFEVRGDRFIEAVEQL 459


>gi|157960514|ref|YP_001500548.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
 gi|157845514|gb|ABV86013.1| UDP-N-acetylmuramate [Shewanella pealeana ATCC 700345]
          Length = 461

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 125/375 (33%), Gaps = 20/375 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     +    ++A+ G+ GKT+T  ML      ++      G     +     ++ 
Sbjct: 97  QFLAEHILPQR--WVLAVAGTHGKTSTSSMLA---WILEDCGYEPGFLIGGVPQNFGVSA 151

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 F + E     S   + R      +P   VI  +   H   F  ++ I      +
Sbjct: 152 RLGGSPFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G I    D +  + +         +  +  G S+                +  
Sbjct: 212 IRTVPGEGKIIWPADANSVQQVIDMGCWSEQEQYHLSGNSQGWYAVNLTED---GHKFEV 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    IG H  +N +M +     +    + AI AL+ F P + R +     
Sbjct: 269 FFDGESQGILDWQLIGQHNIENAVMAIAAARHVGVKPEAAIAALTQFAPPKRRMELLDTV 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                +    + +  +P ++    + L+ +       +I V+ +       S      LA
Sbjct: 329 NGIEVY----DDFAHHPTAI---TTSLNGMRARVGSGKITVILEPRSNTMKSGVHKDTLA 381

Query: 394 EVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             LSL + ++++ +G     +  A+   SI V     +D +   + +     D ++V  S
Sbjct: 382 NSLSLASNAYLYQAGNIDWDISAAMSCASIPVEVLYDIDEIVERVSAQANSTDTIIV-MS 440

Query: 453 NSCGFYRLINLLLEE 467
           N  GF  L   LL +
Sbjct: 441 NG-GFGGLHQKLLAK 454


>gi|114777861|ref|ZP_01452792.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114551852|gb|EAU54392.1| UDP-N-acetylmuramate--L-alanine ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 458

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 128/404 (31%), Gaps = 37/404 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +A+     IPV         +  LA   R++     +A+ GS GKTT   ++   + +
Sbjct: 81  PEIAAAEKRGIPVI----PRAEM--LAELMRMKQG---VAVAGSHGKTTMTSLIAHGMEA 131

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I                     + + E   S           + P IAV++ I
Sbjct: 132 AGMDPTYIIGGRL---TATGSNARLGASPWLVAEADES-----DGSFLRLSPTIAVVSNI 183

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL ++     +  A       +   G + L+++      L+   H        ++G 
Sbjct: 184 DPEHLDHYGDFATLQEAFRTFVNLVPFYGRVVLHHEHPHVAALRLGLHKPVT----TYGS 239

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           S  AD  L + +  SE        +      E      G H A+N L  + ++  L  D+
Sbjct: 240 SLQADLHLLESRAGSEGQCFTAASREHGNLGEFHLPMPGRHNAENALAAMAVLMDLGIDI 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVLSQISP 365
           +T   AL+ F   + R +R  C                 +             +     P
Sbjct: 300 ETIRSALASFEGIQRRFQRTSCGTGVMVDDYAHHPREVLATLVAARDCWPERHISVIFQP 359

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--LPRSIH 423
           H   R   ++ D     + +    +      S   I      G +  AL          H
Sbjct: 360 HRFTRTRDLMDDFMGAFDTANEVSLLPIYAASEAAIE-----GVNSQALCQGMLARGHRH 414

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           V   E +D     ++  L  G +V++  + S G   L   L EE
Sbjct: 415 VSLLENLDEAAAAVREQLAAGHIVLLMGAGSIG--ALAARLREE 456


>gi|227824967|ref|ZP_03989799.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
 gi|226905466|gb|EEH91384.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Acidaminococcus sp.
           D21]
          Length = 459

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 90/304 (29%), Gaps = 35/304 (11%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P IA I  I P H      +E   +AKA+IF        + LNYD+     L ++
Sbjct: 171 MTTFHPQIACIVNITPDHFERHGNMENYINAKAQIFAHQTAEDVLVLNYDNEPDRKLASR 230

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + +            K A  +   +    + S                  G H  QN+L 
Sbjct: 231 AASRVFFFSTEEKLEKGAWIEEGNFVFDVDGSKH-----VVCKVSDLKIFGAHNEQNVLA 285

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +         V+   K L  F   E R +              ++S   N  S   AI 
Sbjct: 286 AILCCHFAGVTVENMEKVLKAFEGVEHRLEYVTTIKGVP---YYNDSKATNTDSAVKAIE 342

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
                    EG  I + G   +M +L++         ++      + L G        A 
Sbjct: 343 AFK------EGHVILLAGGHDKMTDLTEFM------QVTARKTDALILLGEARQRFLKAA 390

Query: 419 PRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
            ++   +      + +              VV++    SS             F  +++ 
Sbjct: 391 QKNGVKNIVMCDGSFEDAVRLAYDMAKPPQVVLLSPACSSYDMFANFPERGRVFKSIVHT 450

Query: 464 LLEE 467
           L +E
Sbjct: 451 LKKE 454


>gi|238784570|ref|ZP_04628577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
 gi|238714536|gb|EEQ06541.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           bercovieri ATCC 43970]
          Length = 438

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 126/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  ++AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCRENQVPVVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALTL-LKQENQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LVVLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ F     R    +         
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRF---QLVFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P    +   ETM+   + +  SL  GD+V++    +S     
Sbjct: 365 I-KIYCFGRDGDELAELRPEVSQLT--ETMEQAMVLLSKSLAPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|302380068|ref|ZP_07268545.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312141|gb|EFK94145.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna
           ACS-171-V-Col3]
          Length = 461

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/368 (14%), Positives = 115/368 (31%), Gaps = 38/368 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L  L    +       I ++GS GK+TT  M+   L   +   + +          +  
Sbjct: 103 FLGALMRNYKYS-----IGVSGSHGKSTTTSMIAKILIDARVDPSILLGGKLDE---IQG 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + ++ + E        + +      P +A+I  I   HL  +  +  I +     
Sbjct: 155 NVHCGNSEYMLTEACEYKANILNYY-----PSMAIILNIDEDHLDFYKDLNHIVATFIGY 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L++     +N DD   E L +      I       K+      +   +  +    + 
Sbjct: 210 MKNLDENSKAIINIDDKNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVS 269

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +   K  E     IG H   + +  +        D+DT  K +  +H    R +     
Sbjct: 270 SEKFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGFY 329

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQ 386
                 T                 + L  +  H +G+   V          M  + + + 
Sbjct: 330 KGCEVKTDY-------GHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKML-LDDFAN 381

Query: 387 SFHI--DLAE---VLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSS 440
           SF+   ++       +            H   L + L    ++  Y +T +    +I+S 
Sbjct: 382 SFYDCDEVIVTEIYAAREKFDSSI----HSTDLVEKLVKNGVNAKYYKTFEEARDYIRSK 437

Query: 441 LVDGDVVV 448
           + + D+V+
Sbjct: 438 VCENDMVL 445


>gi|302541868|ref|ZP_07294210.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459486|gb|EFL22579.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces himastatinicus
           ATCC 53653]
          Length = 485

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 78/428 (18%), Positives = 145/428 (33%), Gaps = 52/428 (12%)

Query: 45  AIK--GPHYD-GHDFILHAVQKG-----AGLVVVNTDMVASIGSL------SIPVFGVDD 90
           A++  G     GH         G     A  VVV++ + A    L       IPV    D
Sbjct: 51  ALRELGATVHLGH-------AAGNVASDATSVVVSSAIRADNLELVAARERGIPVVHRSD 103

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
              AL  L    R       IA+ G+ GKTTT  ML ++L ++    + +   +      
Sbjct: 104 ---ALAALMDGHRP------IAVAGTHGKTTTTSMLAVSLRTLGLDPSYVIGGDLD---A 151

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
              +      +  + E   S     ++      P +A+I  +   H +N++ ++EI  + 
Sbjct: 152 PGSSAEHGGGEIFVAEADESDRSFHKYA-----PEVAIILNVELDHHANYASMDEIYDSF 206

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
               E +   GT+ ++ D      L A+        + ++G++ +AD ++         S
Sbjct: 207 RTFVERVRPGGTLVISADHDGARELTAQLAGREGLRVLTYGEAADADVRVLDVVPHGLTS 266

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            + V+                  ++            A +D   + L+         KR 
Sbjct: 267 EVTVRFAEALGGGEITFTVSVPGRHYAHNAVAALAAGAALDVPARDLAPAIASYTGVKRR 326

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      + +SY  +P  + A +  +      GEGR + V      +   +Q    
Sbjct: 327 LQLKGTAAEVQVIDSYAHHPTEIAADLEAIRG--GAGEGRVLVVFQP--HLFSRTQELGA 382

Query: 391 DLAEVLSLYNISHVW---------LSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSS 440
           ++ E L+L + S V          + G     + DA       V  +     +   I   
Sbjct: 383 EMGEALALADASVVLDIYPAREDPVPGITSDLVIDAARHHGADVTAAHDRSAIPGLIAGM 442

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 443 AKPGDLVL 450


>gi|227485010|ref|ZP_03915326.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227237007|gb|EEI87022.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 468

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/388 (13%), Positives = 112/388 (28%), Gaps = 30/388 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +  + + +     L  PV       G  L  L    +       IAI+GS GK+TT  M
Sbjct: 79  AIADDNEELIEAKKLDAPVV----TRGVFLGALMRNYKNS-----IAISGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L    +    +                  + DF + E          +      P 
Sbjct: 130 ISKILLHSDENPTILLGGILDDMKGNVKVG---NEDFLVTEACEYKGNIRYYF-----PQ 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
             +I  I   HL  +  + +I +   E     ++     LN ++   +L+        + 
Sbjct: 182 TVIILNIDEDHLDYYKDLNDIVNTFKEYLRNQDENSKTILNLNEENNKLILDAVQ-GDLI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T        +       + +    S+  +   G         IG H   N + ++     
Sbjct: 241 TYGQENPDADYYATNINFDEVGRPSFDLMMKNGDVEHFKLGVIGRHNINNAMASIIATYE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVL 360
              D++T  + +  +   + R +           T             +         ++
Sbjct: 301 NGIDINTIRENILKYTGLDRRMQIIGHVNKTTIMTDYGHHPSEILVTLDALKEHTKGRLI 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
               PH   R   +  D       +    +      +            H   + DA+  
Sbjct: 361 CVWQPHTYSRTKTLFNDFLNSFNSADEIIVTDI-YAAREKFDPTI----HSKDVVDAMVK 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + ++  Y  T +    +I + + D D+V
Sbjct: 416 KGLNAKYISTFEEARDYIYTIIKDDDLV 443


>gi|220904385|ref|YP_002479697.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254765997|sp|B8IZU2|MURC_DESDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219868684|gb|ACL49019.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 457

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/386 (17%), Positives = 120/386 (31%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +      +I +         +  LA   RLR     IAI G+ GKTTT  +     
Sbjct: 77  DNPELVEARKRNIAII----PRAEM--LAELMRLRQG---IAIAGTHGKTTTTSLTASIF 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I     ++             ++ I E   S           + P I V+T
Sbjct: 128 DEAGLDPTVIIGGRLNV---YGANAHLGHGEYLIAEADES-----DGSFLCLLPIINVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL ++   E I SA  +    +   G   +  DD     L  +     +    ++
Sbjct: 180 NVDEDHLDHYKTREAINSAFVQFMNNVPFYGLNIVCGDDPGVLELLPQVKRPVL----TY 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +++   +    +      +       K  EV     G H   N L ++G    +    
Sbjct: 236 GFAEDNALRAVPLESGRISRFQVWLHDEKLGEVSLPQPGRHNILNALASIGAAMEVGISF 295

Query: 311 DTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     L  F     R +            + G       +  A    +     +++   
Sbjct: 296 EKCAAGLCGFKGVGRRFEFKGEKQGVTVVDDYGHHPAEIAATLATARQVFEGRRIVAAFQ 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A  G+ C++        +      S   I      G    +L   + +  S 
Sbjct: 356 PHRFSRTEAHFGEFCKVFNNVDQLLLTEIYAASENPI-----PGVSGQSLAQGIRQVSST 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V Y +T+D L   +   L +GDV++
Sbjct: 411 PVEYFQTLDDLARALPDILQEGDVLL 436


>gi|260462088|ref|ZP_05810332.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
 gi|259031948|gb|EEW33215.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           opportunistum WSM2075]
          Length = 466

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 119/438 (27%), Gaps = 62/438 (14%)

Query: 57  ILHAVQKGA-----GLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR-- 105
           I  A  +GA        V++  +  +      P + V+   GA    +  + +  R R  
Sbjct: 53  IETADLRGADWAKFSAFVLSPGVPLTHPK---PHWTVELARGAGVEVIGDIELFCRERTL 109

Query: 106 --SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A  I ITG+ GK+TT  +    L S  +          +IG  +     P      
Sbjct: 110 SAPAAPFIGITGTNGKSTTTALTAHILKSAGRDTQMG----GNIGRAVMTLDPPKPDRHY 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     +     L   + P   ++  + P HL     ++  AS K  +  G E     
Sbjct: 166 VVECSSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYASIKERLVAGSETAIIG 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +   +       ++    I+       +           +     +  V        +
Sbjct: 222 IDDSWCAQIAERLERAGRQVIRISKRLPLTDGYFADGSNLMEAVHGRYSRVAFLEGIGSL 281

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                  +    +   L +   L           S      G   R      +     I+
Sbjct: 282 RGQHNAQNALAAVAACLRVGLELGEI-------QSGLESFPGLAHRMEQVGRKDHVLFIN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +   A+S  ++I     G          E G             ++      
Sbjct: 335 DSKATNADAAAPALSSFNRIYWIAGGLP-------KEGG---IEPLRGFFPRIAKA---- 380

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS---- 452
            +L G    A    L  ++    S T+              D    VV++    +S    
Sbjct: 381 -YLIGEAAPAFSATLGEAVPYEISGTLAAAVEHAARDAARDDSGEAVVLLSPACASFDQF 439

Query: 453 -----NSCGFYRLINLLL 465
                    F +  N + 
Sbjct: 440 KNFEVRGEAFRQAANAIE 457


>gi|224368382|ref|YP_002602545.1| MurD [Desulfobacterium autotrophicum HRM2]
 gi|223691098|gb|ACN14381.1| MurD [Desulfobacterium autotrophicum HRM2]
          Length = 458

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 129/430 (30%), Gaps = 56/430 (13%)

Query: 30  ISIDSRSIAPQEAFF-----AIKGPH--YDGHDFILHAVQKGAGLVVVNTDMV---ASIG 79
           ++ DSR +            A+ G     +GH   +   + GA LVV +  +    A   
Sbjct: 43  VATDSRPLGQD---VTAPLEAL-GVRCETNGHR--VETFE-GAALVVTSPGIPLDMAFFE 95

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
                   V   L     L      R    ++AITG+ GKTT   +++  L     +   
Sbjct: 96  RARAKKISVTGEL----DLFFYFLER---PLVAITGTNGKTTVTTLVSEMLKRSGLSVFT 148

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                 +IG PL         +  +     S   +      +  P +AV+  IA  H+  
Sbjct: 149 G----GNIGTPLVEFLESGQTEDVVVAEVSSFQLDAA---TMFAPRVAVLLNIAEDHMDR 201

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
           ++     A +K  +     +     +N         K    A+ +        +   D +
Sbjct: 202 YTAFSAYADSKWALLGNQSENDIAVVNQTLPIDSDRKRTIKAVLLTFGEDKACNAAIDTR 261

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   ++  +++ +           I       +L       I  A  D +  A   
Sbjct: 262 SIAISTQDQKFVLDLSVTRLRGAHNRENIAAAALAALLAGACQAGIQGALDDFSGLA--- 318

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                    R             ++S   NP +++ A+           G    +L    
Sbjct: 319 --------HRTEYVTAINGVDYYNDSKGTNPHAVEGALR----------GFDRVILI--- 357

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS 439
            +G  S+         L    +  V L G     +K  L  ++ +  + +M  +      
Sbjct: 358 -LGGRSKGTDFSCLVPLINQRVKTVILMGEAAREIKAVLGSTVEILEAGSMADVVSVANR 416

Query: 440 SLVDGDVVVV 449
               GD V++
Sbjct: 417 IATHGDTVLL 426


>gi|162449936|ref|YP_001612303.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
 gi|189082502|sp|A9FI59|MURC_SORC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161160518|emb|CAN91823.1| UDP-N-acetylmuramate-alanine ligase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 138/413 (33%), Gaps = 37/413 (8%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           G   D GH    +   +G  +VV ++ +      L+        V+G    LA   R++ 
Sbjct: 51  GVRIDIGHR-AENV--RGVDVVVYSSAIRPENPELTEARALGTPVIGRAEMLAELMRVKY 107

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AI GS GKTTT  ++   L +       +        V   +A +  +   G  +
Sbjct: 108 G---VAIAGSHGKTTTTSLVATVLRAAGLDPTVV--------VGGKMAALGTNARLGAGD 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L ++   E       + P IAV+T I P HL ++   E I  A  E    +   G   L 
Sbjct: 157 LLVAEADESDGSFLRLTPTIAVVTNIDPEHLDHYGTHERIKDAFVEFAARVPFYGLAVLC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVH 285
            D    + L  +      +   ++G S  +D+  R  +    E S+   +          
Sbjct: 217 LDHPHVQDLLPRI----PRRHVTYGVSPQSDYSARGIQFRGLETSFNAYRRGEPLGGFTV 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L T+ +   L   +D   +AL+ F     R               + + 
Sbjct: 273 KMPGAHNVLNCLATIAVADELEVPLDVTKQALATFGGVARRFTVVGSIGG----VTMIDD 328

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---S 402
           Y  +PA ++A I                V+         ++    +     +  ++   +
Sbjct: 329 YGHHPAEIRATIDAAR--RAFPGEDHRVVVAFQPHRHTRTRDLFDEFTRAFNQADVLLVT 386

Query: 403 HVWLSGF------HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            ++ +G           L  ++    H    +      L   ++     GDVV
Sbjct: 387 DIYAAGEPPIPGVTAERLVQSIREHGHHDARFIADKTDLPEALEKIARPGDVV 439


>gi|322834422|ref|YP_004214449.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
 gi|321169623|gb|ADW75322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rahnella sp. Y9602]
          Length = 438

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 114/349 (32%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  I+AITGS GK+T   ++     +             +IG+P+    +  + D
Sbjct: 99  FCRETQTPIVAITGSNGKSTVTTLVGEMAKAAGWRV----GVGGNIGLPVLTM-LDHEYD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L     L        A I  +   H+  +  G+++  +AK +++E     
Sbjct: 154 LFVLELSSFQLETTHSLHA----AAATILNVTEDHMDRYPFGLQQYRAAKLKVYENAALC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+         +  D  LR   +    +         +
Sbjct: 210 VVNADDALTMPVRGADKRCVSFGVDVGDYHLTRQQDDIWLRVRGEKVLNTREMPLTGRHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +     + ++ T         ++                      
Sbjct: 270 YTNALAALALADAVGIPHASSLKALTTFTGLAHRFQVAWQ---------------HNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H EG    +LG   +  + S      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVEGTLHLLLGGDGKSADFSP-----LTRYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L D  P    +   ETM+     I + +V GD+V++
Sbjct: 365 L-RIYCFGRDGAELADLRPDVSSL--FETMEQAMRDISTRVVSGDMVLL 410


>gi|239931807|ref|ZP_04688760.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291440176|ref|ZP_06579566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
 gi|291343071|gb|EFE70027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           ghanaensis ATCC 14672]
          Length = 472

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 132/415 (31%), Gaps = 51/415 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +  +     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT +ML   L
Sbjct: 86  DKPLFVAAERAGVPVWG--DV-----ELAWRLRRPDSAPWLAVTGTNGKTTTVQMLASIL 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +         +   +IGV L  A +   + D    EL    L         +R H AV+
Sbjct: 139 EAAGLR----TAAVGNIGVSLLDAVLGEEEYDVLAVELSSYQLHWA----PSLRAHSAVV 190

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +AP HL     ++  A+ K  I+EG        +  D +  +L++      G + +  
Sbjct: 191 LNLAPDHLDWHGSLQAYAADKGRIYEGNRVACVYNV-ADKATEDLVREADVEEGCRAVGF 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              +              +++++E + +          +      N+   L   ++  A 
Sbjct: 250 TLGTPGPSQLGVVEGILVDRAFVEDRYRSAQELAEVSDVNPPAPHNVANALAAAALARAF 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A               R     +      +D+S   N  + +A+++    +     G
Sbjct: 310 GVPATAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKATNTHAAEASLAAYEPVVWIAGG 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                  D    G              +   +    L G     +++AL R         
Sbjct: 370 LAKGATFDELVAG--------------AAKRLRGAVLIGRDRALIREALARHAPEVPVVD 415

Query: 430 MD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +D              +     GD V++    +S             F + +  L
Sbjct: 416 LDRTDTGAMLQAVQEARRLARPGDTVLLAPACASMDMFANYNRRGEAFAQAVREL 470


>gi|269960239|ref|ZP_06174614.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
 gi|269835046|gb|EEZ89130.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           1DA3]
          Length = 437

 Score = 57.9 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 56/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T         +IGVP     +  D D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVLAKAAGLTV----GVGGNIGVPALDL-LEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         ++   A    ++  H+  + G+ +   AK  IF+  E        
Sbjct: 162 LSSFQLETTA----SLKLKAAAFLNLSEDHMDRYDGMADYRQAKLRIFDNTEL------- 210

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +          +   +  +D Q    +    ++W+    Q         
Sbjct: 211 -------AVVNRDDRETFPETETPLVTFGSDEQAYGLEVDGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHKSLNALKTYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        +TM+ +   I S L  GD+V++    +S           
Sbjct: 370 FGADGDEF---MPLHESATRFDTMEDVIQQISSQLKTGDMVMLSPACASFDQFDNFMARG 426

Query: 455 CGFYRLINLLLEEF 468
             F      L E++
Sbjct: 427 DAF----AALAEKY 436


>gi|193301875|gb|ABV90250.2| sporulation protein A [Bacillus subtilis subsp. sadata]
          Length = 458

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I++I  +  AHL      E    AK +++     +    +N
Sbjct: 169 LSSFQLMGTH----AFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  +    S         +  +     + S +    +         
Sbjct: 225 QDDETVVRLAEAGKAEIVPFSVS---------KTLEQGAYVKDSMIMFNGEAILPLEEVV 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 276 LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRL---QYVTTVNGRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S   +      G            G    +   DL   +   ++  V  
Sbjct: 333 ATNILATSKALSAFDKPVILLAG------------GLDRGNGFDDLKPYMK--HVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|149927133|ref|ZP_01915390.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
 gi|149824072|gb|EDM83293.1| UDP-N-acetylmuramate--L-alanine ligase [Limnobacter sp. MED105]
          Length = 466

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 141/399 (35%), Gaps = 33/399 (8%)

Query: 63  KGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            GA  VV +T +  S    L+     V  V  A+  LA   RL+     IA+ G+ GKTT
Sbjct: 63  AGADAVVTSTAVGGSNPEVLAARAARVPVVPRAV-MLAELMRLKQG---IAVAGTHGKTT 118

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L+  K     +     +            +   G  E  +    E       
Sbjct: 119 TTSLVASILAEGKLDPTFVIGGRLN--------SAGANAKLGTGEFMVVEADESDASFLN 170

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + P IAVIT I   H+  +             F        +     D        +   
Sbjct: 171 LMPVIAVITNIDADHMETYGHDFARLKQAFVEFTQRLPFYGVAAVCVDDPC---VREIMP 227

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTL 300
              KTI ++G S+ A  +    + C  Q    V +     +++  +  G H  +N L  +
Sbjct: 228 FVSKTIVTYGLSEQAQIRAVNVQACQGQMKFTVLREDEAPLDITLNLPGDHNVRNSLAAI 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISV 359
            + + +    +  + AL  F+    R + Y   A  +G   L+ + Y  +P  M A ++ 
Sbjct: 288 AVATEIGVSDEAIVAALEKFNGVGRRFQHYGEVAAKEGGHFLVVDDYGHHPVEMAATLAA 347

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFHVLALKD 416
                P        VL         ++    D  +VL    L  +S V+ +G   +   D
Sbjct: 348 ARGAYPDK----RLVLAFQPHRYTRTRDCFEDFVKVLGTPDLVILSEVYSAGEAPIVAAD 403

Query: 417 A--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
              L R++ V       + E M+ +   I +   DGD+V
Sbjct: 404 GRSLARAVRVAGRTEPVFVEDMNEMKSTILNIARDGDLV 442


>gi|157963624|ref|YP_001503658.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           pealeana ATCC 700345]
 gi|157848624|gb|ABV89123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           pealeana ATCC 700345]
          Length = 439

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 119/380 (31%), Gaps = 53/380 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L   A  ++ A +I ITGS GKTT   ++     +   +Y    +   +IGVP     +
Sbjct: 98  ELFARAVAQTSAKVIGITGSNGKTTVTTLVGEMAKASGSSY----AVGGNIGVPALDLLL 153

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L      T+ ++   A    I+  H+  +S +E    AK +++E 
Sbjct: 154 EPK-DLYVLELSSFQL----ETTYSLQCVAATCLNISEDHMDRYSDLESYRQAKLKLYEQ 208

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +       +            +         SFG                      + +
Sbjct: 209 SKMAVFNREDTL----------TLPNNPTNQQSFGLDAPEGDDW--------GVSGGMIV 250

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QG S  +    +    + N+   +  +++ TA        + V     G   R     + 
Sbjct: 251 QGSSQIMPISDVALVGSHNLANIIAAMALTTAAGIKRECQIEVAKTFLGLAHRCEVVADI 310

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T +++S   N  +  AAI  L        G  I + G   +  +             
Sbjct: 311 DGVTYVNDSKATNIGATVAAIDGL----SEHLGELILIAGGDGKGADFKPLE-------P 359

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK------ 450
            L  +S + + G     +    P +I V     M             GD+V++       
Sbjct: 360 VLEKVSQLIVLGKDGDKIAGLKPEAIKV---ANMVEAVAKAHELATAGDIVILSPACSSL 416

Query: 451 ------SSNSCGFYRLINLL 464
                  +    F  L+  L
Sbjct: 417 DMYPNFMARGDEFRSLVEAL 436


>gi|283850513|ref|ZP_06367801.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574084|gb|EFC22056.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 470

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 126/386 (32%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V       IPV         +  LA   RLR+    IA+ G+ GKTTT  +L    
Sbjct: 90  DNPEVVVARERGIPVI----PRAEM--LAELMRLRTG---IAVAGTHGKTTTTSLLATIF 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        I     +                G  E  ++   E       + P  +V+T
Sbjct: 141 TEAGLDPTVIIGGRLN--------AYGAGARLGQGEYLIAEADESDGSFLCLAPIASVVT 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL +++GIE I  A  E   G+   G   +  DD     L  + +        ++
Sbjct: 193 NVDADHLDHYAGIEAIDDAFVEFLNGIPFYGVNVVCLDDPGVARLLPRINRP----FVTY 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + A  + R  +  ++  ++         E+  +  G H  QN L  +G+        
Sbjct: 249 GFGEKARLRGRILETGAKSRFLVSLDGEDLGEMRLNHPGRHNVQNALGAIGVSLETGIAP 308

Query: 311 DTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
               +AL+ F     R +            + G       +  A   ++     ++    
Sbjct: 309 AVIAEALAKFGGVGRRFEIKGERAGVVVVDDYGHHPAEIRATLATARAVYPDRRLVVAFQ 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A+ GD C   E + +  +      S   I      G    +L   + +    
Sbjct: 369 PHRFSRTKALFGDFCTCFEAADTLLLTEIYPASEAPI-----PGVSGESLARGIRQVSKT 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V Y      +   +   L  GD+++
Sbjct: 424 DVAYYPDFAAVEAALPGVLRPGDLLL 449


>gi|254485599|ref|ZP_05098804.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
 gi|214042468|gb|EEB83106.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter sp. GAI101]
          Length = 471

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/398 (17%), Positives = 123/398 (30%), Gaps = 37/398 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSI-PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA ++V+++ +      L      G+  V  A   LA   RL+S    IA+ G+ GKTTT
Sbjct: 70  GAEVIVISSAIKPGNPELDAARFAGLPIVRRA-EMLAELMRLKSN---IAVAGTHGKTTT 125

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L             N  I             ++ + E   S         + +
Sbjct: 126 TTMVAELLVK---GGIDPTVVNGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNRL 177

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              IA++T I P H+ ++   + +     +    +   G      D    + L  K    
Sbjct: 178 PATIAIVTNIDPEHMEHWGNFDTLRQGFLDFVSNIPFYGLAICCIDHPEVQALVGKITDR 237

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            + T     ++      L      +              +      G H   N L  + +
Sbjct: 238 RVMTYGFNAQADVRAVNLHYKAGVAHFDIQFQSEDITIKDCSLPMPGDHNVSNALAAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L    +    AL+ F     R       + +     I + Y  +P  + A +     
Sbjct: 298 SRHLGIKGEEIRAALAGFGGVNRRFT----KVGEVDGVSIIDDYGHHPVEITAVLKAA-- 351

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV------ 411
                EGR IAV     +    S+  H             +  I+ V+ +G         
Sbjct: 352 -RQATEGRVIAV----HQPHRYSRLSHHFDEFCACFNDADVVGIAEVYAAGEDPIPGASR 406

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
             L   L R  H      ++ + L   ++     GD+V
Sbjct: 407 DDLVAGLIRHGHRHARAVQSEEDLARLVKEQAGPGDMV 444


>gi|163790538|ref|ZP_02184967.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
 gi|159874141|gb|EDP68216.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Carnobacterium sp. AT7]
          Length = 461

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 100/328 (30%), Gaps = 48/328 (14%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  I EL    L  I  L    +PHIAVIT I  AHL      EE  +AK  I +   
Sbjct: 162 KDDEIIMELSSFQLMGITEL----KPHIAVITNIYSAHLDYHGTREEYVAAKMTITKNQT 217

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +   + LN+D      L  K  +      +S  +  +    L+      +        + 
Sbjct: 218 EEDYLILNWDQPELRALSEK--SKATIIPFSRKEILDNGVYLQDDVIYYQG-------EP 268

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H  +N +  + +  +L  +       L  F   + R    +       
Sbjct: 269 VMAKETILVPGDHNVENAMAAIAVAKLLNQENGAIRATLEKFTGVKHR---TQFVTEFEE 325

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + +         +  G    + +L    + G         ++     
Sbjct: 326 RRFYNDSKATNTLATEN--------ALKGFDVPVILLAGGLDRGNDFDDLIPAMSG---- 373

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
             +  + + G     L +   ++    +   + ++             DV+++    +S 
Sbjct: 374 -KVKALIVFGETATKLAETGEKAGIPTIIDVQNVEAAVPVAYELSEAKDVILLSPACASW 432

Query: 453 --------NSCGF----YRLIN-LLLEE 467
                       F     +L+   + EE
Sbjct: 433 DQYRSFEVRGDAFIHSVEQLVEDAIEEE 460


>gi|253988592|ref|YP_003039948.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780042|emb|CAQ83203.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photorhabdus
           asymbiotica]
          Length = 423

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 120/375 (32%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   IIAITGS GK+T   ++     +             +IG+P     +     
Sbjct: 86  FCREATTPIIAITGSNGKSTVTSLVGEMAKAAGWQV----GVGGNIGLPALEL-LKQSCQ 140

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H+  +              +GL +  
Sbjct: 141 LYVLELSSFQL----ETTYSLKAAAATVLNVTEDHMDRY-------------PQGLSQYR 183

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L         +      L +       +  +       ++  SE ++++V  Q    
Sbjct: 184 AAKLRVYHQAKRCIVNVQDTLTLPETGMDSRCVSVGVDCGDYQLDSENAFLKVHNQSLLA 243

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L+ L +   +    + ++  L+V+     R    +          
Sbjct: 244 ANEIKLTGRHNYVNGLVALALADAVGIPREASLATLTVYPGLNHRF---QLVHLNNGVRW 300

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     + EG    +LG   +  + S        + +     
Sbjct: 301 INDSKATNVGSTEAALNGL-----NLEGTLYLLLGGDGKSADFSPLKPFLCGDKV----- 350

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L    P       +ETM+     I   LV GD+V++    +S      
Sbjct: 351 -RLYCFGRDGKRLAQLRPE--IATLTETMEQAIRDIAPRLVAGDMVLLSPACASLDQFRN 407

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 408 FEQRGHEFARLAEEL 422


>gi|94311991|ref|YP_585201.1| UDP-N-acetylmuramate [Cupriavidus metallidurans CH34]
 gi|93355843|gb|ABF09932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cupriavidus metallidurans CH34]
          Length = 477

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/410 (14%), Positives = 118/410 (28%), Gaps = 30/410 (7%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+         L+  +  V         L            +A+ G+ GKTTT  ML  
Sbjct: 88  VVSRGNPLMEAILNRNLPYVSGP----QWLGEHVLN--GKWTLAVAGTHGKTTTTSMLAW 141

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFL--THLVRP 184
            L                 GVP     +    + DF + E                  RP
Sbjct: 142 ILEDAGYNP-----GFLVGGVPQNFGISARLTESDFFVIEADEYDTAFFDKRSKFVHYRP 196

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +   H   F  +  I +    +   +   G + +N  +     +  +     +
Sbjct: 197 RTAILNNLEYDHADIFPDLTAIETQFHHLVRTVPGEGRLVVNGQEPALARVLERGCWSEV 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG    ++   +      + ++     +     +V    G H   N +  +    
Sbjct: 257 EQ---FGVGDWSETDPKTAAPEGKDAFDIWFREALQGTLVWDLQGTHNRLNAIAAIAAAR 313

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLS 361
            +      AI++L  F   + R +    A        F     +       ++  +    
Sbjct: 314 HVGVPPAQAIESLGRFSNVKRRMEVRGVAGGVTVYDDFAHHPTAIQTTVDGLRRRVGDAR 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
            ++          LG M      S      +    +      +         L +AL   
Sbjct: 374 ILAVLEPRSNTMKLGVMAAQLPASLREADLVFGYGAPSGKDAL------GWNLAEALAPL 427

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                  + +  L   ++++   GD V+V  SN  GF  +   LL+   A
Sbjct: 428 GEKAAAFQDLGTLVEAVRAAAQPGDQVLV-MSNG-GFGGVHQKLLDALGA 475


>gi|184201127|ref|YP_001855334.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
 gi|183581357|dbj|BAG29828.1| UDP-N-acetylmuramate--L-alanine ligase [Kocuria rhizophila DC2201]
          Length = 468

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 73/402 (18%), Positives = 127/402 (31%), Gaps = 30/402 (7%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAIT 114
             A   GA  VVV+T +      L+        V   L     LA A   R    +IA+ 
Sbjct: 65  DAAHVAGASTVVVSTAIREQNPELAAARGAGLRV---LHRSQALAAAMHGR---RVIAVA 118

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLG 173
           G+ GKTTT  M  +AL +     +     +    V    A    D  ++ + E   S   
Sbjct: 119 GTHGKTTTSSMTAVALRAAGLRPSWAIGAH----VADLGANAGFDAGEWFVAEADESDGS 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            + +      P +AV+T + P HL ++   E    A  E  + + + GT+    DD    
Sbjct: 175 FMAYH-----PEVAVVTNVEPDHLDHYGSAEAFHRAFDEFSDTIREGGTLVACADDPGAA 229

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  +    G     S+G    AD  L +       +   +                   
Sbjct: 230 RLAERRRTRGGAV-LSYGTDPGADVVLSELTPHGTGTTCRIGFPVPGGRREALLELAVPG 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            +                   + L           R      +     + + Y  +P  +
Sbjct: 289 AHNAADAAAAFAAGCAAGADPEQLLAGLADFHGSARRFDLKGEQGGVRVFDDYAHHPTEV 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMC--EMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            AA+     ++  G  R +A+          E +++F   L E+  L  ++ V+ +    
Sbjct: 349 AAALGAARDVA--GGRRVLAIFQPHLYSRTREFAEAFCRAL-ELADLACVTDVFGAREQP 405

Query: 412 L-----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 A      R+  V  +         + +    GDVV+
Sbjct: 406 EPGITGATITGHARNGRVVSTPATREAVEAVVARAEPGDVVM 447


>gi|289435377|ref|YP_003465249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171621|emb|CBH28167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 455

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 39/299 (13%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PHI+VIT I  AHL   +   E   AK  I +   +   + +N+D    + L  ++ A
Sbjct: 180 FKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDFLVINWDQEELKNLTKQTKA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +         Q        +   +    +           G H  +N+L ++ 
Sbjct: 240 QVIPFSTT---------QRLGQGSYVQNGNIMFNDEVIGPRDSILLPGEHNLENVLASVA 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  +  L  F   E R    +  +        ++S   N  + ++A+    
Sbjct: 291 VAKTLGVANEEIMHVLETFKGVEHRT---QFVVEWQGRKFYNDSKATNILATQSALKGFK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-R 420
                  G            G    +   +L       N+  + + G     +       
Sbjct: 348 NPVVLLAG------------GLDRGNSFDELLPFFK--NVKALIVFGETADKIGRVGKIA 393

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            I VHY + ++            GD++++    +S             F   I+ L+EE
Sbjct: 394 GIEVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAFMDAISELIEE 452


>gi|319649665|ref|ZP_08003821.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
 gi|317398827|gb|EFV79509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus sp.
           2_A_57_CT2]
          Length = 450

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 89/290 (30%), Gaps = 32/290 (11%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L          RP IA++T +  AHL      EE  +AKA I     +  
Sbjct: 163 NIVIELSSFQLM----GIQDFRPRIAILTNLYDAHLDYHGTREEYHAAKANITMNQTEKD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N D        A+S A  I    S         ++       +  W+    +    
Sbjct: 219 YFIVNADQDKVMEAAARSEAKIIPFSTS---------RVLSEGAYVKDGWIYFNDEQVMK 269

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L ++    +     +   + LS F   + R    +          
Sbjct: 270 RKDVSLPGEHNLENILSSVAAAKLTGVGNEAISQVLSSFTGVKHRL---QYVGEYQSRKF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + K A+S   Q      G            G    +   +L   L    +
Sbjct: 327 YNDSKATNILATKNAVSAFDQPVILLAG------------GLDRGNGFDELIPSLK--KV 372

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +   G     +++A   +    +   + ++            GDV+++
Sbjct: 373 KALVTFGQTAEKIENAAMEAGIKTIERVDNVEKAVPAAFKLSEPGDVILL 422


>gi|261253806|ref|ZP_05946379.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
 gi|260937197|gb|EEX93186.1| UDP-N-acetylmuramate--alanine ligase [Vibrio orientalis CIP 102891]
          Length = 486

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 131/393 (33%), Gaps = 42/393 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +  S  IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   
Sbjct: 94  ENPEIIAARSARIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIY 144

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S        +                  +   G   + ++   E       ++P ++++T
Sbjct: 145 SEAGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMVSIVT 196

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +     +    L   G   +  DD     L  K      + + +
Sbjct: 197 NIEADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCVDDPVVRELIPKI----SRQVIT 252

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  ++     +++  +  G H A N    + + +    
Sbjct: 253 YGFSDDADVRIANYRQDGQQGKFTVIRQGKADLDITLNIPGRHNALNASAAIAVATEDDI 312

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             +  + A++       R              ++ + Y  +P  +   I      + +G 
Sbjct: 313 ADEAILSAMAGTQGTGRRFDHLGEFDTGNGQAMLVDDYGHHPTEVDVTIQA----ARNGW 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFHVLALKDA 417
             +  V+         ++  + D A VL    +  +            ++G    AL   
Sbjct: 369 EDKRLVMIFQPHRYSRTRDLYDDFANVLEQ--VDVLIMLDVYSAGEKPIAGADGRALCRT 426

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           +     +   +      L   + + L DGD+V+
Sbjct: 427 IRSRGKLDPIFVPESKALPAVLANVLQDGDLVL 459


>gi|16078584|ref|NP_389403.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309394|ref|ZP_03591241.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221313719|ref|ZP_03595524.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318643|ref|ZP_03599937.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221322916|ref|ZP_03604210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|417327|sp|Q03522|MURD_BACSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|580932|emb|CAA78769.1| murD [Bacillus subtilis subsp. subtilis str. 168]
 gi|2633891|emb|CAB13393.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291484071|dbj|BAI85146.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis subsp. natto BEST195]
          Length = 451

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I++I  +  AHL      E    AK +++     +    +N
Sbjct: 169 LSSFQLMGTH----AFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  +    S         +  +     + S +    +         
Sbjct: 225 QDDETVVRLAEAGKAEIVPFSVS---------KTLEQGAYVKDSMIMFNGEAILPLEEVV 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 276 LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRL---QYVTTVNGRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S   +      G            G    +   DL   +   ++  V  
Sbjct: 333 ATNILATSKALSAFDKPVILLAG------------GLDRGNGFDDLKPYMK--HVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|294635010|ref|ZP_06713527.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
 gi|291091609|gb|EFE24170.1| UDP-N-acetylmuramate--alanine ligase [Edwardsiella tarda ATCC
           23685]
          Length = 476

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 135/408 (33%), Gaps = 49/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 68  ASVVVVSTAIAADNPEIIAAREARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 118

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+    +        +                     + I E   S    +   
Sbjct: 119 KTTTTAMVASIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 173

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   L  DD     L  
Sbjct: 174 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCIDDPVIRELLP 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S++AD ++ +++Q   +  +   +     + V  +  G H A N 
Sbjct: 231 RV----GRHVTTYGFSEDADVRIEEYRQSGAQGGFFLCRQDRPRLAVTLNAPGRHNALNA 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
                +      D +  ++ALS F     R         +   NQ    ++ + Y  +P 
Sbjct: 287 AAAAAVAMEEGIDDEAILRALSGFQGTGRRFDFLGEFSLQHVNNQPGQVMLVDDYGHHPT 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 347 EVDATIKAARAGWPDR----RLVMVFQPHRFTRTRDLYDDFANVLSQVDVLLMLDVYPAG 402

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     +L   +     +          L   +   L DGD+++
Sbjct: 403 ESPIPGADSRSLCRTIRGRGKLDPVLVSEPATLAQVLAQFLQDGDLIL 450


>gi|170696722|ref|ZP_02887837.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
 gi|170138385|gb|EDT06598.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia graminis C4D1M]
          Length = 467

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 144/416 (34%), Gaps = 49/416 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      K I  +G + +A  +    +    +       +  +  ++V + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGLAPDAQVRAVNVEARDGKMHFTAMREDAAPLDIVLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLI 342
            G H  QN L  + I + L        +AL+ F+    R +RY                +
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVTSDGEPRGAYTL 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  M A ++      P        VL         ++    D  +VLS  +  
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDAL 390

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            ++ V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 391 VLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALAALVRDGDVV 446


>gi|169824118|ref|YP_001691729.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
 gi|167830923|dbj|BAG07839.1| UDP-N-acetylmuramate-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 461

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/361 (15%), Positives = 107/361 (29%), Gaps = 24/361 (6%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L  L    +       I ++GS GK+TT  M+   L   K   + +          +  
Sbjct: 103 FLGALMRNYKYS-----IGVSGSHGKSTTTSMIAKILIDAKVDPSILLGGKLDE---IQG 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + ++ + E        + +      P +A+I  I   HL  +  +  I +     
Sbjct: 155 NVHCGNSEYMLTEACEYKANILNYY-----PSMAIILNIDEDHLDFYKDLNHIVATFIGY 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L++     +N DD   E L +      I       K+      +   +  +    + 
Sbjct: 210 MKNLDENSKAIINIDDKNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVS 269

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +   K  E     IG H   + +  +        D+DT  K +  +H    R +     
Sbjct: 270 SEKFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGFY 329

Query: 334 LNQGFFTLIDESYNANPASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 T           ++                PH   R   +L D           
Sbjct: 330 KGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANAFYDCDEV 389

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +      +            H   L + L    ++  Y +T +    +I+S + D D+V
Sbjct: 390 VVTEI-YAAREKFDSSI----HSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCDNDLV 444

Query: 448 V 448
           +
Sbjct: 445 L 445


>gi|42523429|ref|NP_968809.1| hypothetical protein Bd1952 [Bdellovibrio bacteriovorus HD100]
 gi|39575635|emb|CAE79802.1| mpl [Bdellovibrio bacteriovorus HD100]
          Length = 451

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 51/419 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            + +    +  L IP      +  A+ +  +  R       + I+G+ GKTTT  M+   
Sbjct: 61  ASNEEAQELMKLGIPY---TSLPKAMGEFIIENRES-----VVISGTHGKTTTTSMMAWV 112

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIA 187
             +        G     I    + +    + ++ I E                  RP   
Sbjct: 113 AENAGVK---PGFLIGGIPKNFSQSFKNPEDNYFIIEGDEYDTAFFDKVPKFIHYRPKHV 169

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++T++   H   +  ++++  + A + + L + GT+    +D+    L+  +        
Sbjct: 170 ILTSVEFDHADIYKDLDDVKKSFARLMDLLPENGTLLACAEDANVMELRKLTKCKNSF-- 227

Query: 248 YSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            ++G    ADF+ +   Q +    +                 G +   N    + +  +L
Sbjct: 228 -TYGFGAEADFRAKIMFQNANGLGFEVHHRGEIMGPYAMQITGEYNVLNATAVVAMSKML 286

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    AL  F   + R    +  L +    L+ E +  +P ++      +  I   
Sbjct: 287 GFSENRIQIALESFEGVKRR----QEILGEPNGILVIEDFAHHPTAV---RETVKGIQKK 339

Query: 367 GEGRRIAVLGDMCEMGELSQSFHID------------LAEVLSLYNISHVWLSGFHVLAL 414
             GR++  + +        + F  D            LA+      I        +  + 
Sbjct: 340 YPGRKVFSVFEPRSATSRRKVFQKDYVEAFKGSHEVLLAKAFDQTKIDE-----ENRFST 394

Query: 415 KDALPRSIHVHY----SETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLL 465
            + +      H      +T D +   ++S    GDV+++  SN  GF     +L+  L 
Sbjct: 395 HELVDDLKKTHVTAADFDTADDIVAALKSKAHKGDVILI-MSNG-GFDGIYTKLLKALE 451


>gi|218184973|gb|EEC67400.1| hypothetical protein OsI_34565 [Oryza sativa Indica Group]
          Length = 889

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 6   TFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFA-----IKGPHYDGHDFIL 58
           T  +LL   +   +         + G+  D+  +A  + +       + G        + 
Sbjct: 226 TLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLYVCVGEEGLAG--------LT 277

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLRSK-ATIIAITGS 116
            A ++GA  VV +  +          +  VDD+  AL  L A   R  SK   +I + G+
Sbjct: 278 EADKRGAVAVVADQTVDIEGTLACRALVIVDDITAALRMLPACLYRRPSKDMAVIGVAGT 337

Query: 117 VGKTTTKEMLTIALSSI 133
            G TTT  ++     ++
Sbjct: 338 DGVTTTAHLVRAMYEAM 354


>gi|149914524|ref|ZP_01903054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
 gi|149811317|gb|EDM71152.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           AzwK-3b]
          Length = 496

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 114/393 (29%), Gaps = 42/393 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A+Q G     V+ D+     SL    + V DV                  ++A+TGS
Sbjct: 118 VAKALQAGVP---VDNDIGLFFASLGGADWAVHDV---------------APRVVAVTGS 159

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   L    K          +IG  +     P D    + EL         
Sbjct: 160 NGKSTTSALIHHVLHEAGKDV----QLAGNIGRGVLDIDPPGDGGVVVLELSSYQ----T 211

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P +AV T ++P HL   +G+    +AK  +F        +    +     +  
Sbjct: 212 ELARALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGIDEPEGLFMAG 271

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             + A G   +      +                    + + +    +    G     N 
Sbjct: 272 QLATAPGDDRVIRISVDRKLAGPGWSVFARKGFLSEYRKGKQQGAIDLREIKGLPGQHNH 331

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                  +   +   +       FH   G   R +    +   T +++S   N  S   A
Sbjct: 332 QNACAAYAACRSLSLSPKVIERAFHSFAGLPHRSQVIAEKDGVTFVNDSKATNVDSALKA 391

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++  + I     G +        E G               L N+   ++ G        
Sbjct: 392 LNAFANIRWICGGLQKEGGLAGLEPG---------------LRNVLKAYVIGREAAQFAL 436

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L          TM        +    G+ V++
Sbjct: 437 QL-TGTEAETCTTMQTAVAHAMADAKPGETVLL 468


>gi|74310707|ref|YP_309126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shigella
           sonnei Ss046]
 gi|118595692|sp|Q3Z5S1|MURD_SHISS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|73854184|gb|AAZ86891.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Shigella sonnei
           Ss046]
 gi|323165971|gb|EFZ51751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shigella sonnei
           53G]
          Length = 438

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAECE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGV------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R       L      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRF---EVVLEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA  L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LARYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     +   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQLGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGNEFARLAKEL 437


>gi|332994935|gb|AEF04990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Alteromonas sp. SN2]
          Length = 460

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 133/418 (31%), Gaps = 44/418 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  ++   S P + +D++L                 +I ++G+
Sbjct: 67  IGNAMSRGNSA--VEYVLNRNLPYTSGPQWLLDNLLK-------------DRWVIGVSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  M+      ++ +    G     +     ++    +  F + E     S   +
Sbjct: 112 HGKTTTSSMVA---WILEYSELNPGYLIGGVPENFGVSARIGESPFFVIEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      RP   VI  +   H   F+ +  I +    +   + + G I         E 
Sbjct: 169 KRSKFVHYRPKTLVINNLEFDHADIFADLAAIQTQFHHLVRMVPENGLILTPNHTPAIEE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              K             +         +        +  +        V    +G H   
Sbjct: 229 TLKKGCWTP--------RQCLGKEWSAELINKDGSQFNVLFNNEIVGAVQWELLGQHNVD 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--NQGFFTLIDESYNANPAS 352
           N LM +         +  AI ALS F   + R +         +G    + + +  +P +
Sbjct: 281 NALMAIAAAHHAGVTLHDAIAALSSFKNVKRRMEIKGVVTLAAEGKPVTVYDDFAHHPTA 340

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS--- 407
           +   I  L      G  R +AVL    E    +     H +     S      V++    
Sbjct: 341 IATTIDGLR--KKVGNARILAVL----EPRSNTMKMGVHKNTLAH-SWQAADAVYVYEPQ 393

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G      + A            ++ +   +QS +  GD +++  SN  GF  + N +L
Sbjct: 394 GLDWSLKEAAAASPAPTTVFNDVENIVKVLQSEVRPGDHILI-MSNG-GFEGIHNRVL 449


>gi|240125711|ref|ZP_04738597.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae SK-92-679]
 gi|268684304|ref|ZP_06151166.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
 gi|268624588|gb|EEZ56988.1| hypothetical protein NGKG_01112 [Neisseria gonorrhoeae SK-92-679]
          Length = 458

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 123/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +           +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------GHGWQIGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   DV TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDVQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPASLKEADQVFCYAGGADWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +H  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGRRLHVGKDFDTFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|157369004|ref|YP_001476993.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Serratia
           proteamaculans 568]
 gi|157320768|gb|ABV39865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Serratia
           proteamaculans 568]
          Length = 439

 Score = 57.6 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +  +  
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWAV----GVGGNIGLPALSL-LRQECQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E  E  
Sbjct: 154 LYVLELSSFQL----ETTFSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAEVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G             D       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADKRCISFGA------------DVGDYHLNRQLGETWLRVRGEKIL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    + A       
Sbjct: 258 NTREMKLTGRHNYTNALAALALADAVNIPRASSLKALTTFTGLAHRF---QLAWEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      LA+ L   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LAQYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     I   +   D+V++    +S     
Sbjct: 365 V-RLYCFGRDGEQLAQLRPEV--ATLTETMEQAMQAIAGRVQSDDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEVRGDEFARLAQEL 437


>gi|321315285|ref|YP_004207572.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
 gi|320021559|gb|ADV96545.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           subtilis BSn5]
          Length = 451

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 112 SAKFIGITGSNGKTTTTTLIYEMLKAGSQKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I++I  +  AHL      E    AK +++     +    +N
Sbjct: 169 LSSFQLMGTH----AFRPEISLILNVFDAHLDYHHTRENYEKAKQKVYLHQTASDKAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  +    S         +  +     + S +    +         
Sbjct: 225 QDDETVVRLAEAGKAEIVPFSVS---------KTLEQGAYVKDSMIMFNGEAILPLEEVV 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 276 LPGAHNLENILAAIAVVKTAGASNEAVKKVLTSFTGVKHRL---QYVTTVNGRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S   +      G            G    +   DL   +   ++  V  
Sbjct: 333 ATNILATSKALSAFDKPVILLAG------------GLDRGNGFDDLKPYMK--HVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKLEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|300715306|ref|YP_003740109.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
 gi|299061142|emb|CAX58249.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Erwinia billingiae
           Eb661]
          Length = 438

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 125/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGDMAKAAGWQV----GVGGNIGLPALML-LEQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L         ++   A I  +   H+  +  G+++  +AK  ++E     
Sbjct: 154 LYVLELSSFQLETTA----SLKAAAATILNVTEDHMDRYPLGMQQYRAAKLRVYENAAVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +        L A+  + GI        +++ +  L        ++     +   +
Sbjct: 210 VVNADDAMTFPVRGLDARCVSFGINAGDYHLATESGESWLNVKGDNLMKTSDMTLVGQHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  + +                 +L       G   R++ AL++    
Sbjct: 270 QTNALAALALAEAVGLPLA---------------SSLKALTTFSGLAHRFQIALDRNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----QGTLWLLLGGDGKSADFSP-----LTRYLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +   +  G    AL +  P       +ET+      I + +  GD+V++    +S     
Sbjct: 365 VRT-YCFGRDAQALAELRPE--IAVRTETLADAMKQIATQVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 422 NFERRGDAFTQLAKEL 437


>gi|254827076|ref|ZP_05231763.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
 gi|258599459|gb|EEW12784.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL N3-165]
          Length = 455

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 TDDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLNQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|326693779|ref|ZP_08230784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Leuconostoc
           argentinum KCTC 3773]
          Length = 448

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 69/448 (15%), Positives = 138/448 (30%), Gaps = 72/448 (16%)

Query: 51  YDGHDFIL-----HAVQKGAGLVVVNTDMVASIGSLSIPVFGVD----DVLGALNKLA-- 99
            +G DF+           G   +  N D   S+ +    +        D       +A  
Sbjct: 37  VNGGDFVPDDTFNQLQAAGVTFI--NHDEATSLDASFDYLIKNPGIPYDTALVQRAIALD 94

Query: 100 -------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
                    A    +  +IA+TGS GKTTT  ++   L +  +      +   +IG P++
Sbjct: 95  IPVLTEVAVALSSFEGRLIAVTGSNGKTTTTSLIREMLLADGQRV----TTAGNIGTPVS 150

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + EL    L         ++P IA+IT I   HL      E+  +AK 
Sbjct: 151 EVVADLTADDTLLLELSSFQLM----GVPDIQPDIALITNIFANHLDYHGTREQYVAAKF 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++ +      T+ LN D        A + A  +    +              +  +    
Sbjct: 207 QLTQNQTVAQTLVLNADSPDTAQFTADTAAQVVPFSRTQS----------GHRVAATAGN 256

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + +  Q          +G H  +N+L  + +  +   + +   + L+ F     R     
Sbjct: 257 LVIDDQVVMPLTAIKLVGPHNLENILAAVTVAKLAGVENEAIRQVLASFGGVAHRL---E 313

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   +  + + A+    Q            L    + G+        
Sbjct: 314 YLFTDQAVMYYNDSKATDIEATQTALDSFDQ--------PTIWLAGGLDRGDDLTRL--- 362

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
              + ++ ++  V   G     +   A    + V   + +        +    GDVV++ 
Sbjct: 363 ---LPNMTHVKTVVAFGETQQKVVAVAKAAGLPVQTVDDVTAAARLAVTLAQAGDVVLLS 419

Query: 451 ---SS---------NSCGFYRLINLLLE 466
              +S             F   ++ L +
Sbjct: 420 PAAASWDQYDNFEVRGEAF---VSELKK 444


>gi|189183854|ref|YP_001937639.1| UDP-N-acetylmuramate--L-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180625|dbj|BAG40405.1| UDP-N-acetylmuramate-alanine ligase [Orientia tsutsugamushi str.
           Ikeda]
          Length = 502

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 80/414 (19%), Positives = 138/414 (33%), Gaps = 50/414 (12%)

Query: 63  KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GAG+VV+++ +  +           IP+         +  LA   R +     IAI+GS
Sbjct: 83  NGAGIVVISSAIKHNNPEYQAAISAKIPII----SRAEM--LAELMRSKIA---IAISGS 133

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++     +       I     +            D D+ I E   S      
Sbjct: 134 HGKTTTTALIACIFEACGLHPTVITGGIMNN---KATNAYLGDGDYFIAEADES-----D 185

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   IAVIT I   HL  +   + + SA  +    L   G      DD   + L 
Sbjct: 186 ATFIKIPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQNLI 245

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-----MEVQLQGKSMEVVHHGIGYH 291
           AK  +  I T     K+ +                          +    +V    +G H
Sbjct: 246 AKITSRKIITYGIDSKNAHIQAFNINTDNGYSTYDVRIKAYNFHNEVIITQVTLPALGKH 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + I   L  D++        F     R       + +     + + Y  +PA
Sbjct: 306 NILNSLAAIAIAVELNLDLNIIKDGFKNFKGIARRF----TKIGEYNNITVIDDYAHHPA 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
            + A I +   I+   +GR IAV        + ++   S+  H    + +    IS ++ 
Sbjct: 362 EIIATIDIARCIADKQQGRVIAVFQPHRYSRLKQL--FSEFTH--CFQRVDQLYISQIYD 417

Query: 407 SGFHV------LALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKS 451
           +G         ++L +A+    H  Y      +D L   I   +   D++++  
Sbjct: 418 AGEQETYNLSHISLVNAIKSYYHSVYVMPINNLDDLPQIIYRQVKPYDIILLMG 471


>gi|240128167|ref|ZP_04740828.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268686562|ref|ZP_06153424.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
 gi|268626846|gb|EEZ59246.1| hypothetical protein NGLG_01069 [Neisseria gonorrhoeae SK-93-1035]
          Length = 458

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 122/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +           +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------GHGWQIGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   DV TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDVQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPASLKEADQVFCYAGGADWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +   +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|323706122|ref|ZP_08117691.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534566|gb|EGB24348.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 454

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 115/355 (32%), Gaps = 34/355 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A   SKA I AITG+ GKTTT  +L     +             +IG PL  A +  +
Sbjct: 100 EFAYRLSKAPIYAITGTNGKTTTTSLLGEIFKASGV----KTYVAGNIGYPLVEAAINAN 155

Query: 160 VDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            +   + E+    L          +P I+ I  I P HL+    +E     K  IFE   
Sbjct: 156 AEDVIVAEISSFQL----ETIKEFKPVISAIINITPDHLNRHKTLENYIEIKGRIFENQT 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 LNYDD     L  K+         +         +  K    +       +   
Sbjct: 212 ADQFTVLNYDDKNISSLFKKAKCNVFPFSRNRALEYGTYLENGKIIISANG-----EKST 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  +  G H  +N ++   +  +   D+    + L  F   E R        N   
Sbjct: 267 IIDIEDIYIPGNHNVENAMVASTMAYLAGIDIKVISETLRTFKGVEHRI---EFVRNVNG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   NP +   AI  +       +G  I + G   + G     F          
Sbjct: 324 VKYYNDSKGTNPDAAIKAIEAM-------KGPIILIAGG-YDKGVSFDEFTASF-----K 370

Query: 399 YNISHVWLSGFHVLALKDALPRSIH----VHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G     +  +  +  +    V + E++D       ++   GD V++
Sbjct: 371 GRVKKLILLGETKDLIYKSAIKEGYSEDDVIFVESIDDAVYAAYNAAKPGDNVLL 425


>gi|328957125|ref|YP_004374511.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
 gi|328673449|gb|AEB29495.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Carnobacterium sp.
           17-4]
          Length = 470

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 92/293 (31%), Gaps = 31/293 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  I EL    L  I  L    RPHIAVIT I  AHL      EE  +AK  I +   
Sbjct: 171 SDDEIIMELSSFQLMGITEL----RPHIAVITNIYSAHLDYHGTREEYVAAKMSITKNQT 226

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +   + +N+D      L  +  +      +S  +       L+      +        + 
Sbjct: 227 EEDYLIVNWDQPELRELSQQ--SKATIVPFSRKEILETGVYLQDDVIYYQG-------EP 277

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              +      G H  +N +  + +  +L  +      +L  F   + R    +       
Sbjct: 278 VMAKETILIPGDHNVENAMAAIAVAKLLNQENGVIRTSLEQFTGVKHRT---QFVREWNE 334

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + + A+           G            G    +   +L  V++ 
Sbjct: 335 RRFYNDSKATNTLATENALKGFDVPIILLAG------------GLDRGNNFDELIPVMNK 382

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + + G   + L +    +    +   + ++             DV+++
Sbjct: 383 -KVKALIVFGETAMKLSETGTEAGIPTIISVQNVEAAVPVAYELSEPNDVILL 434


>gi|325847851|ref|ZP_08170073.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480869|gb|EGC83922.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 436

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 117/359 (32%), Gaps = 35/359 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            RL     II++TG+ GKTTT  ++T  L+   K    +G+          L +M     
Sbjct: 90  YRLFEDKKIISVTGTNGKTTTTSLITYVLNQAGKNAISVGNIGE-----GILWQMYNKDA 144

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L   +      +PHI  I  I+P H+      E  A+ K ++ +  +K  
Sbjct: 145 VFVEEVSSFQLHNTK----TFKPHIGAILNISPDHIDWHGSFENYANDKLKLAKNQDKDD 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N+DD      K K  A            + +  +  +     +   + ++ +    
Sbjct: 201 FLVINHDDKILSKNKNKFKAK---------IYEFSMKEKVERGIYLKDDSLYLKDEKDIF 251

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +      N+      +  L        K +      +    R            
Sbjct: 252 LLNKKDLKIVGNHNLANAACAMLCLYLYGIDLEKVIKYTKTFKAIEHRLEFVKKVKNVPF 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S   AI          +   I + G   +  + S  F  +  +      I
Sbjct: 312 YNDSKATNVDSTIKAIDSF-------DKNIILLAGGYDKKIDYSPMFEKENGK------I 358

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVK-SSNSCGF 457
             + L G     + + L +   V Y   + M          + D D V++  +S S G 
Sbjct: 359 KAMILLG-QTKYILENLCKKYKVKYFLVDNMQMAVDKSFEIMEDSDTVLLSPASASWGM 416


>gi|150390641|ref|YP_001320690.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|167017285|sp|A6TS63|MURD_ALKMQ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149950503|gb|ABR49031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           metalliredigens QYMF]
          Length = 455

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 113/375 (30%), Gaps = 44/375 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV-DVDFGI 164
           S+  I+AITG+ GKTTT  +         K    +     +IGVP     +   + D  +
Sbjct: 108 SRGKIVAITGTNGKTTTTALTGEIFKGAGKNTYVV----GNIGVPFIEKALDTTEEDVIV 163

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E+    L           P +  +  + P HL+    IE    AK  +F          
Sbjct: 164 IEVSSFQL----ESIKEFHPKVGTLLNLTPDHLNRHKTIENYREAKLNLFMNQSLQDYAV 219

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           LNYDD            L  + IY   K    +      +  + Q+  +        E+ 
Sbjct: 220 LNYDDITSR---EAGKTLAAQKIYFSRKQILEEGVFVDNQLITIQTKEKRYDVIHIDEIK 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             G            +  +  ++A+     K L  F     R               I++
Sbjct: 277 ILGQHNLENALAATAMTFILGVSAE--DIAKGLRNFPGVAHRL---EFVEEIEGVKYIND 331

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   AI              I + G   + G+ +               + H+
Sbjct: 332 SKGTNTDASIKAIEAAQA-------PIILLAGGQDKGGDFTD------FVKAFDGKVKHL 378

Query: 405 WLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
            + G     + +    +    V     ++   +  +     GD +++    +S       
Sbjct: 379 LVYGETSDNIYETALHNNFKVVSQVRDLEEAVIRAKGIAQAGDTILLSPACASWDMYPNF 438

Query: 453 --NSCGFYRLINLLL 465
                 F +L++ L 
Sbjct: 439 EARGQHFKKLVSSLR 453


>gi|323486714|ref|ZP_08092035.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323692147|ref|ZP_08106390.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
 gi|323400095|gb|EGA92472.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14163]
 gi|323503721|gb|EGB19540.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium
           symbiosum WAL-14673]
          Length = 448

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 136/414 (32%), Gaps = 51/414 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDD----VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           V   +++    L  P   V D     + +  +LA      +K  + AITG+ GKTTT  +
Sbjct: 67  VELSVISPGIPLDAPFVTVLDEAGVPIWSEIQLA---YHCAKGKLAAITGTNGKTTTTAL 123

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRP 184
               + S   +   +     +IG P T   +  +     + E+    L          RP
Sbjct: 124 TGEIMRSFYDSVFVV----GNIGEPYTAHALETEESSVTVAEVSSFQL----ETIMDFRP 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +++ I  I P HL     +E     K  I +  +   T  LNYDD+        +  + +
Sbjct: 176 NVSAILNITPDHLDRHKTMECYTQVKESITKNQKDGDTCVLNYDDTVLREFGE-TLKINV 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S  K K   +        ++ S +   +           +G H  +N++  + I  
Sbjct: 235 VYFSSREKLKKGYYLEDGKIVYNDGSKVTEIVDIS----ELKLLGRHNHENVMAAVAISM 290

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +   ++   + +  F   E R         +      ++S   NP +   AI  +    
Sbjct: 291 NMDVPLEKIQEVIRKFEAVEHRI---EFVTERFGVKYYNDSKGTNPDAAMQAIKAM---- 343

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-- 422
               G  I + G     G    S   +  E      + ++ L G     + +   R    
Sbjct: 344 ---PGPTILIAG-----GYDKHSEFDEWIESFD-GKVRYLVLIGQTRDKIAECAKRHGFT 394

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            + Y+E +        S    GD V++    +S             F   +  L
Sbjct: 395 DIMYAEDLLEAVQVCASYANPGDNVLLSPACASWGQFKNFEERGTKFKEYVRGL 448


>gi|315652170|ref|ZP_07905167.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
 gi|315485565|gb|EFU75950.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           saburreum DSM 3986]
          Length = 448

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 87/303 (28%), Gaps = 30/303 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +    + E     L          RP I+ I  I P HL+    +E     K +I +  
Sbjct: 152 NENTVTVLETSSFQL----ETVIDFRPKISAILNITPDHLNRHHTMENYIRVKEDISKNQ 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           ++     LNY+D+       +  A  +              +        + +  ++   
Sbjct: 208 DENDFCILNYEDAALREFAKRVKAKVVFFSSKERLDNGFYLEGGFIMHSVDGNSTKLLD- 266

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                   + +G H  +N++    I  +     D  +     FH  E R           
Sbjct: 267 ----TGKLNILGRHNYENVMAATAIAFVYGVPQDIIVNTCYNFHAVEHRI---EFVKEVN 319

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S   NP +   A+  +   +    G            G    S + +  E   
Sbjct: 320 GVKYYNDSKGTNPDAAIQAVLAMPAATYIIGG------------GYDKGSEYDEWIESFG 367

Query: 398 LYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
              +  + L G     + D   +     +   E+M+            G+ V++    +S
Sbjct: 368 -TKVKKLVLMGATAKKIADCAKKHGFTDIEIVESMEEAVKLCAGEAKAGEYVLLSPACAS 426

Query: 453 NSC 455
              
Sbjct: 427 WGM 429


>gi|189485185|ref|YP_001956126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287144|dbj|BAG13665.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 441

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/372 (18%), Positives = 128/372 (34%), Gaps = 38/372 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             +++LA +        I+A++G+ GKTT  ++++  + +  K        + +IG PL 
Sbjct: 84  KIMSELAFSLENSKYKKIMAVSGTNGKTTVTDLISKIIKAAHKD----SIVSGNIGCPLA 139

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +   +  F   EL    LG     T   RP I+V+  I P HL     ++    AK 
Sbjct: 140 DKALKTTETTFITMELSSYQLG----DTPDFRPAISVLLNITPDHLEYHKTMKAYLRAKE 195

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF          +NYDD     +  K+ A  I    +  K              S    
Sbjct: 196 NIFINQRDGDFTVINYDDKICRKIFEKTKAAVIFFSKTPLKKGVF--------YDSGSIV 247

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + V+ +   ++   + +G H  +N+L  +              K +S +   E R     
Sbjct: 248 INVKEKHYVIKPKINIVGTHNIENILAAVAASYAAGVKPAVIEKIVSKYKGVEHR---IE 304

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S + N  S + A+                +L  M   G      +  
Sbjct: 305 FVKTLNGVDYYNDSKSTNIDSTRVALESFD----------KNILIIMG--GRDKGVPYTP 352

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           L E++    +  ++L G     +K  L  +  V     M+     I  + V  D+ ++  
Sbjct: 353 LKELVKQR-VKLIFLIGEASDKIKKDLNGASFVD-CGNMENAVKQIFRTAVRADIALLSP 410

Query: 450 -KSSNSCGFYRL 460
             +S    F   
Sbjct: 411 ACAS-FDQFENF 421


>gi|33322727|gb|AAQ07098.1|AF496410_1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl lig [Lactobacillus
           delbrueckii subsp. lactis]
          Length = 109

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           ++ + YN+NP ++KA  +   Q+     GRRIAVL DM E+G  S   H  LA  L    
Sbjct: 9   IMSDIYNSNPTAVKAVTAXFGQVPVSEGGRRIAVLADMLELGSRSADLHKGLAACLDPDK 68

Query: 401 ISHVWLSGFHVLALKDALPRS 421
           I+ ++L G  +  L  AL   
Sbjct: 69  INVLYLYGPEMNXLYQALXGK 89


>gi|325288828|ref|YP_004265009.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964229|gb|ADY55008.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 454

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 109/343 (31%), Gaps = 32/343 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELG 168
           ++ ITGS GKTTT  ++      + K          +IG  ++     +      + EL 
Sbjct: 109 VVGITGSNGKTTTTTLIG----ELAKKTGRPAVVAGNIGTAISGKVEGLGSRGIVVAELS 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  I  L    R +IAV+  I P HL     +E  A+AKA IFE         L++D
Sbjct: 165 SFQLELIDRL----RVNIAVLINITPDHLDRHGTLENYAAAKARIFENQTGKDLAVLSWD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                     + A           +              +    ++  +           
Sbjct: 221 YPMVREYGKITQARVTYISTEELLADGIGLSGNDLVWSRDGKTTKIIARN-----ELQLR 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N++  + +   +        + L  F P   R        +      I++S   
Sbjct: 276 GKHNLENVMCGIAVGLEMGLSGPQIAEVLRGFAPVAHRQ---EVVGSYDGILYINDSKGT 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           NP S   A+    +      G +   L DM E  E ++              +  + L G
Sbjct: 333 NPDSAIKALQSYEEPIVLIAGGKNKGL-DMTEFLEEAKK------------RVKSLVLVG 379

Query: 409 FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
                L+    +    +  +    +       +    GDVV++
Sbjct: 380 KAADDLEIIAKKIGIKNIIKAVDFEDCVDKAIAEAAKGDVVLL 422


>gi|212696146|ref|ZP_03304274.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676775|gb|EEB36382.1| hypothetical protein ANHYDRO_00682 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 463

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 36/392 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           N + + +  SL +PV       G  L  L    +       IA++GS GK+TT  M++  
Sbjct: 83  NNEELIAARSLGVPVV----TRGVFLGGLMKNYKNS-----IAVSGSHGKSTTTSMISKI 133

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L +  K    +   +      +       D +  + E          +      P I +I
Sbjct: 134 LMNSTKNPTILLGGDLDE---IEGNVHVGDEEILVTEACEYKGNIRYYY-----PSIGII 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  +  + +I        +  ++     LN ++   +L+           + +
Sbjct: 186 LNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVIDSVQGE----LIT 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+               E       L  K     H  +      N+      +      
Sbjct: 242 YGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIISTLES 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES--------YNANPASMKAAISVLS 361
                   +     +G  +R +   N     +I +          N +  +      ++ 
Sbjct: 302 GVDIETIKNSIQSYKGLERRMQLLGNIDGCKIILDYGHHPSEIQVNLSALAEHTKGRLIC 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PR 420
              PH   R   +  +     + +    I      +                + DAL  +
Sbjct: 362 VWQPHTYTRTKRLFNEFVNCFDDADEVIITDI-FAAREPFDPSI----SSKDIVDALVEK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                Y  T D +  ++ S + + D V+V  S
Sbjct: 417 GKSAKYLPTFDQVKEYVLSDIKENDQVIVTGS 448


>gi|149190166|ref|ZP_01868442.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
 gi|148836055|gb|EDL53016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           shilonii AK1]
          Length = 442

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 127/341 (37%), Gaps = 39/341 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GK+T  ++      +             +IGVP     + ++ D  + EL 
Sbjct: 109 PVIAITGSNGKSTVTDLTGAMAKAAGINV----GVGGNIGVPALDL-LELNADLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T+ ++  ++    ++  H+  + G+E+ A AK  IF   E    +    +
Sbjct: 164 SFQL----ETTYSLKTKVSTFLNLSEDHMDRYHGMEDYAQAKRRIFFNAE--HALVNRDE 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L     A        FG            ++   Q W+    +          +
Sbjct: 218 PETSPELAGLPVATFGFNEQDFG-----------MREIDGQVWLVDNGETIISTDQLRLV 266

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+   ++ +   +    +  L+ +     R    +   ++     +++S   
Sbjct: 267 GKHNWSNALVACALLKLSGINYRKGLACLAAYTGLSHR---CQVVADEKGVKWVNDSKAT 323

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+S L+      EG+   ++G + +  + S     +LA+ LS  N+  +   G
Sbjct: 324 NVASTLAALSGLTL-----EGKLYLLVGGVGKGADFS-----ELAKPLSELNV-KLCCFG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     P ++     +T++ +   I   L  GD+V++
Sbjct: 373 RDGEEFMALHPSAVR---YDTLNNVLTDITPELQKGDMVML 410


>gi|146329426|ref|YP_001209869.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
 gi|189029172|sp|A5EY22|MURC_DICNV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146232896|gb|ABQ13874.1| UDP-N-acetylmuramate-alanine ligase [Dichelobacter nodosus
           VCS1703A]
          Length = 478

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 83/428 (19%), Positives = 143/428 (33%), Gaps = 44/428 (10%)

Query: 43  FFAIKGPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGA 94
           + A KG       FI HA +    A +VVV++ +  +   +       IPV        A
Sbjct: 58  YLAQKGAQI----FIGHAAENVEHADVVVVSSAIAENNVEVKQARALEIPVI-----RRA 108

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              LA   R R     IAI G+ GKTTT  +    LS        +           + A
Sbjct: 109 -QMLAELMRFRFG---IAIAGTHGKTTTTSLTASLLSDAGLDPTFVIGGIL--TAAGSNA 162

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
           R+     + + E   S          L++P I+++T I   HL N+    E + +     
Sbjct: 163 RLGEGH-YLVAESDES-----DCSFWLLQPMISIVTNIDADHLENYNGSYETLKAGFVRF 216

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   L  DD+    +  +         Y F +  +      + K  +    + 
Sbjct: 217 LHNLPFYGLAVLCIDDAGVRSILPEV--GRPVRTYGFSEDADVRAINVRQKGLAMHFDVI 274

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              + +   V  +  G H   N L  + +   L  D +T I+ L+ F     R   +   
Sbjct: 275 AHDEDRCFSVTLNMAGKHNVLNALAAIIVGEELGIDRETIIEGLAQFKGVARRFTHHGRI 334

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDL 392
            +   F  + E Y  +P  +KA +     +      R +AV                 ++
Sbjct: 335 AHDHGFADVFEDYGHHPREIKAVLDAA--MEGFAGRRIVAVFQPHRFTRTRDLLDDFAEV 392

Query: 393 AEVLSLYNISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQ-SSLVD 443
             V     ++ V+ +G           L  A+     V   +    + +   ++   L D
Sbjct: 393 LAVCDCLVLTEVYAAGEEPIAGADARDLTRAIRAHGRVEPIFIADKEEIVPHLRHDILQD 452

Query: 444 GDVVVVKS 451
            DVV+   
Sbjct: 453 DDVVIFFG 460


>gi|219670075|ref|YP_002460510.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfitobacterium hafniense DCB-2]
 gi|254766050|sp|B8FT58|MURD_DESHD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219540335|gb|ACL22074.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 93/289 (32%), Gaps = 27/289 (9%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +  L   V     ++  + P HL     +E   +AKA IFE    +  
Sbjct: 159 IVAELSSFQLELVDSLCMNV----GILLNVTPDHLDRHGTLENYLAAKARIFEKQRPSDC 214

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LN+DD+    L     A  +    +   ++    Q  +     +      ++      
Sbjct: 215 AILNWDDARVRELAPHLKARVVFFSPTSLLAEGYGVQGDEIVLARDG-----KITPIIKR 269

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N++ ++  V  L    +   + L  F   E R               I
Sbjct: 270 RELQLRGNHNLENIMASIAAVRELGLSWEEIAQGLREFKGVEHRQ---EVVGTYEGILFI 326

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP + + A+    +      G            G+       D  + +    + 
Sbjct: 327 NDSKGTNPDAAEKALYAFEEPIVLIAG------------GKNKGLDFHDFMKTVKEQ-VK 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
            + L G     ++ A   +   HY  +ET         +    G+VV++
Sbjct: 374 SLVLVGSAAAEMEQAAKDTGIRHYLRAETFAEAVELAIAEAEPGNVVLL 422


>gi|256379761|ref|YP_003103421.1| UDP-N-acetylmuramate--L-alanine ligase [Actinosynnema mirum DSM
           43827]
 gi|255924064|gb|ACU39575.1| UDP-N-acetylmuramate/alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 466

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 159/466 (34%), Gaps = 68/466 (14%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK--GPHY----DGHDFILHA 60
              +L A      G   +        DSR++       A++  G H     DG + +   
Sbjct: 21  IARILLARGAEVSGSDAK--------DSRTV------LALRAQGAHVAVGHDGAN-LDQ- 64

Query: 61  VQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           +  G   VVV+T +      L       + V        AL  L +  R      +  + 
Sbjct: 65  LDGGPTAVVVSTAIREDNPELVAARERGVAVLRRA---EALAALMLDHR------VACVA 115

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T  MLT+AL   +   +     + +                 + E   S    
Sbjct: 116 GTHGKTSTTSMLTVALQHCRMDPSFAIGGDLNESGANAHQGAGG---VFVAEADES---- 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    P +AV+T +   HL +   +E   +   E  E +E  G +    DD     
Sbjct: 169 -DGSFLFFAPSVAVVTNVEADHLDHHGTVEAYVAVFDEFLERIEPGGVLIACADDEGSAA 227

Query: 235 LKAKSHALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           L  ++   GI+   Y    +      L + +         V+L G+ ++V     G HMA
Sbjct: 228 LADRAEKRGIRVRRYGRAATGEGAAVLVEHRPDGAGGLAVVELDGERLDVRVAVPGEHMA 287

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L     L AD    ++ L+ F     R +    A     +    + Y  +P  +
Sbjct: 288 GNAVAALLAAVELGADRWGVLEGLAAFGGVRRRFEFKGVAAGVRVY----DDYAHHPTEV 343

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
            A +     ++    G    V+     +   +++F  +  + L+L     V +       
Sbjct: 344 AAQLKAARPVA----GDGRLVVVFQPHLYSRTKTFAAEFGKALALA--DEVVVLDVYGAR 397

Query: 408 -----GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                G     + DA+P  +  V +  + D +   +   + +GD+V
Sbjct: 398 EDPEPGVTGELVADAVPLEAGRVRHVPSFDRVPELVAGLVREGDLV 443


>gi|59801227|ref|YP_207939.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|194098558|ref|YP_002001620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239998940|ref|ZP_04718864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae 35/02]
 gi|240014150|ref|ZP_04721063.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI18]
 gi|240016585|ref|ZP_04723125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA6140]
 gi|240112858|ref|ZP_04727348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae MS11]
 gi|240115614|ref|ZP_04729676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID18]
 gi|240117907|ref|ZP_04731969.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID1]
 gi|240121712|ref|ZP_04734674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID24-1]
 gi|240123466|ref|ZP_04736422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae PID332]
 gi|254493727|ref|ZP_05106898.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|260440574|ref|ZP_05794390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae DGI2]
 gi|268594786|ref|ZP_06128953.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268598939|ref|ZP_06133106.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268601293|ref|ZP_06135460.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268603618|ref|ZP_06137785.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268682094|ref|ZP_06148956.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291043877|ref|ZP_06569593.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|293399087|ref|ZP_06643252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|59718122|gb|AAW89527.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae FA 1090]
 gi|193933848|gb|ACF29672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae NCCP11945]
 gi|226512767|gb|EEH62112.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Neisseria
           gonorrhoeae 1291]
 gi|268548175|gb|EEZ43593.1| hypothetical protein NGBG_01077 [Neisseria gonorrhoeae 35/02]
 gi|268583070|gb|EEZ47746.1| hypothetical protein NGFG_00913 [Neisseria gonorrhoeae MS11]
 gi|268585424|gb|EEZ50100.1| hypothetical protein NGGG_00951 [Neisseria gonorrhoeae PID18]
 gi|268587749|gb|EEZ52425.1| hypothetical protein NGHG_00279 [Neisseria gonorrhoeae PID1]
 gi|268622378|gb|EEZ54778.1| hypothetical protein NGJG_01073 [Neisseria gonorrhoeae PID332]
 gi|291012340|gb|EFE04329.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso [Neisseria
           gonorrhoeae DGI2]
 gi|291610501|gb|EFF39611.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria gonorrhoeae F62]
 gi|317164231|gb|ADV07772.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 458

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 122/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +           +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------GHGWQIGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   DV TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDVQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPASLKEADQVFCYAGGADWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +   +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|221065136|ref|ZP_03541241.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
 gi|220710159|gb|EED65527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Comamonas
           testosteroni KF-1]
          Length = 632

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 98/361 (27%), Gaps = 34/361 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFE 166
             ++ ITG+ GKTT   +    L     +    G+     +                + E
Sbjct: 248 PKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPTLLDTLSGRIDAETLPQAWVLE 307

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI----EEIASAKAEIFEGLEKTGT 222
           L    L           P  A +  I   HL    G+    +  A    E    +     
Sbjct: 308 LSSFQLD----DCRGFEPTAATVLNITQDHLDWHGGMQAYADAKAHVFGEQALMVLNRED 363

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----- 277
             +         +  K      +   +FG            +  +  +W+    +     
Sbjct: 364 PVVMAMLPAPVAVPGKRGKTFQRAHVTFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETS 423

Query: 278 --------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        +    +      N +  L  +++ T    T    L       G   R
Sbjct: 424 KGKNVDDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHR 483

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +     G     D+S   N  +      V + +    + R + +LG + + G+      
Sbjct: 484 VQPVGRVGDVEYFDDSKGTNVGAT-----VAALMGLGPDHRIVVILGGLGK-GQDFTPLA 537

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++  +         L G     +++AL    + +  + TM             GD V+
Sbjct: 538 APVSRYVRAA-----VLIGQDAPQIREALGDTGVTLVDAATMQDAVQQAARLAHAGDAVL 592

Query: 449 V 449
           +
Sbjct: 593 L 593


>gi|134298541|ref|YP_001112037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum reducens MI-1]
 gi|189082878|sp|A4J2A9|MURD_DESRM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134051241|gb|ABO49212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfotomaculum
           reducens MI-1]
          Length = 456

 Score = 57.6 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 113/358 (31%), Gaps = 33/358 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +L +A R   KA I+AITG+ GKTTT  +                    +IG+P+   
Sbjct: 96  LGELELAYRFA-KAPIVAITGTNGKTTTTTLTGQLFRDAGF----KTLVAGNIGLPMVSE 150

Query: 155 RMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                V D  + E+    L    +      P +AV+  + P HL     +EE   AK+ I
Sbjct: 151 IENYQVGDIVVAEVSSFQLETTEYFA----PKVAVMLNLTPDHLDRHGSMEEYIKAKSCI 206

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F   + +  + LNYDD     L     +  I         K +  Q  K     +     
Sbjct: 207 FIHQKPSDYVVLNYDDLALRELAKSCPSQVIFFSRQHIIEKGSFIQNDKIMVSGKGG--- 263

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +           G H  +N L        L          L  F     R       
Sbjct: 264 --PEEVIDVNALRIPGPHNLENALAATAAAYTLGLSPRDIAGTLGRFTGVAHRL---EFV 318

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N      +++S   NP +   A+           G            G+       D A
Sbjct: 319 ANINGVEYVNDSKGTNPDAAIKALESYDAPIILIAG------------GKNKGISFNDFA 366

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + +    +  +   G H   +++A       +++  E         +     G++V++
Sbjct: 367 KKIKE-KVRVLITLGVHGYQIEEAAREQGFTNIYPVEDYAQAVQLARKQAKPGEIVLL 423


>gi|291546674|emb|CBL19782.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 459

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 135/407 (33%), Gaps = 41/407 (10%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A      +P+          L ++          T IAI+G+ GKTTT 
Sbjct: 76  TAAIHPDNPEFACAKEKGLPML----TRAELLGQIMRNY-----DTPIAISGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L                  V   L  +  ++  G  E  ++   E         
Sbjct: 127 SMVSHILLEGDCDPTIS--------VGGILPAIHGNIRVGNSETFITEACEYTNSFLSFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I+VI  +   HL  F  I++I  +  +  E L   GT+ +N D   +E +  +     
Sbjct: 179 PKISVILNMDADHLDFFKDIDDIRHSFRKFAELLPADGTLIINADTPEYETITREL---- 234

Query: 244 IKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++G   +AD+      W +    S+  +    K         G H   N L  + 
Sbjct: 235 PCNVLTYGLEHDADYTAADITWDKYGHPSFSVLFRGKKIGSYYLRVPGIHNVSNALAAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAA 356
           +  +L    D  +K L  F   + R +                         + A     
Sbjct: 295 VGRLLDLPNDVIVKGLGSFTGTDRRFQYKGEIGGITIIDDYAHHPTEIEATLHAAKNYPH 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             V     PH   R  A+L +  +   L+ + H+ LA++ +     ++   G     L+ 
Sbjct: 355 QKVWCVFQPHTYTRTKALLPEFAK--ALTLADHVVLADIYAARETDNL---GISSQDLQK 409

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +        Y  T D +  F+  S   GD +++      G   ++N
Sbjct: 410 QIQELGTPCEYFPTFDEIESFLLKSCAHGD-LLIT----MGAGDVVN 451


>gi|187933718|ref|YP_001884427.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum B str. Eklund 17B]
 gi|226711899|sp|B2TIC9|MURD_CLOBB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187721871|gb|ACD23092.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 458

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 66/385 (17%), Positives = 115/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                KA I  ITGS GKTTT  +++  L               +IG P           
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVG----GNIGTPLFAQIEEIKSE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T  +   IAV T +AP HL     ++E   AK  IF   + T
Sbjct: 167 DRVVLELSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQDAT 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ +N ++      KA+  A G+   +S  +        +          +  +     
Sbjct: 222 NTLIVNRENEITYGFKAE--AKGVVREFSSKRELKEGAYYKDGILYLSGKEVCKKDNIVI 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   I +     ++   K    F+  E R              
Sbjct: 280 K--------GMHNVENYLAAFIATKNDVSIENMKKVAESFNGVEHRC---ELVREINGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +      G                   H+    + +   
Sbjct: 329 YYNDSIASSPTRTLAGLKAFDKRVILIAGGY---------------DKHLLFEPLANEGY 373

Query: 401 --ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +KD            I++    T++      Q+    GD++ +  
Sbjct: 374 PYIKELILLGQTKEKIKDVFKELEASKGIKINISEVSTLEEAVKKAQNLARQGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMFPNFMIRGNKFKEIVNEL 458


>gi|254465031|ref|ZP_05078442.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
 gi|206685939|gb|EDZ46421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium Y4I]
          Length = 463

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 62/404 (15%), Positives = 113/404 (27%), Gaps = 45/404 (11%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVFG--------VDD----VLGALNKLAVAARLRS 106
           + GA      ++ +  +  +     PV          VD+       +          + 
Sbjct: 60  KAGAFDDVAALITSPGIPHLYPKPNPVIRAALEAGVPVDNDIGLFFRSFADADWQMHDQ- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+TT  +L   L    +          +IG  +     P +    + E
Sbjct: 119 PPRVVAVTGSNGKSTTVALLHHILQEAGR----ESQLAGNIGRGVLDIDPPGEGGVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-ASAKAEIFEGLEKTGTIFL 225
           L          L   + P +AV T ++P HL    G+    A+ +    E      +   
Sbjct: 175 LSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEADRTAPSSAS 230

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 F     +  +          K     +Q+   K    +     Q     +  + 
Sbjct: 231 TRTRGCFWRPAVRRASDDRVIASRARKLTGPGWQVFARKGFLSEYRKGRQAASIDLREMT 290

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN          L         A++ F     R    +          +++S
Sbjct: 291 GLPGAHNHQNACAAYAAARTLGLAPRVIGDAMATFPGLPHRS---QTIAEAAGVRYVNDS 347

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+S    I     G      G +  +   +              N+   +
Sbjct: 348 KATNLDSAVKALSAFKNIRWICGGLEKD--GGLEALKGQT-------------GNVQKAY 392

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G        AL   +      TM        +    GD V++
Sbjct: 393 VIGREAAGF--ALQLDVEAEVCTTMAAAVERAMADAQAGDTVLL 434


>gi|302853199|ref|XP_002958116.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
 gi|300256584|gb|EFJ40847.1| hypothetical protein VOLCADRAFT_119843 [Volvox carteri f.
           nagariensis]
          Length = 696

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKG----PHYDGHDFILHAVQKGAGLVVVNTD 73
                P   V G+  +   + P + F    G       D    I  AV++GA ++V    
Sbjct: 75  LASSYPDVLVTGLQSNPHLVVPGDIFVLHPGLIPDDDLDA---ISVAVEQGATVIVAPRV 131

Query: 74  MVASIG--------------SLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAITGSV 117
                G                 +P+  V+D L    +LA A      A +  I + G +
Sbjct: 132 KAEDPGLDPAPDPVGLAGILPDEVPLIRVEDSLAMGARLAAAFYDLPSANMVTIGVMGLL 191

Query: 118 GKTTTKEMLT 127
           GKTTT  ++ 
Sbjct: 192 GKTTTAWLIR 201


>gi|258649001|ref|ZP_05736470.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
 gi|260850618|gb|EEX70487.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella
           tannerae ATCC 51259]
          Length = 446

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 108/371 (29%), Gaps = 43/371 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A  I ITGS GKTTT  ++   L               +IG    L     DVD+ + E
Sbjct: 100 QARTICITGSNGKTTTTSLIYHILQKAGYNV----GLAGNIGRSFALQVAEGDVDWYVIE 155

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
           L    L          R  IAV+  I P HL  +   +E   ++K  I +      T   
Sbjct: 156 LSSFQLD----DMFRFRADIAVLLNITPDHLDRYDFKMENYVASKMRILQNQRPQDTFIY 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D        +         ++      A           +        Q     +  
Sbjct: 212 WAGDEHIPTQLQQLAPASRLLAFADAPEAGAAAYAENGLLTID--------QPTPFTMAL 263

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      N+  ++       +         +      G   R     +      +++S
Sbjct: 264 SELSLPGRHNLRNSMAAALAAQSAGVDEATIRAGLADFPGVPHRLEKVADVAGVHYVNDS 323

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+  +           + +LG     G    + + ++A ++       + 
Sbjct: 324 KATNVDACYCALESMQT-------PVVLILG-----GTDKGNDYNEIAPLVRE-KCRALV 370

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
             G     L+D     ++ +  + +M        ++ + GD V++    +S         
Sbjct: 371 FLGADNSKLQDFFANFNLPISDTHSMKDCVAACAAAALPGDTVLLSPCCASFDLFRNMGD 430

Query: 453 NSCGFYRLINL 463
               F  L+  
Sbjct: 431 RGDQFKALVRA 441


>gi|223937423|ref|ZP_03629328.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
 gi|223893974|gb|EEF60430.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [bacterium Ellin514]
          Length = 477

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 112/347 (32%), Gaps = 22/347 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
             +SK   IAI G+ GK TT E++   L+   +  +  G     +    ++     ++DF
Sbjct: 103 FQQSKCLSIAIAGTNGKGTTAELVESILTHNNRKTSLCGHGARPV---CSVVPETKEMDF 159

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + +     L      T   RP +AV+  +A  HL  ++   +   A A +F+  +    
Sbjct: 160 LVLQANSFQL----ETTQFFRPAVAVLMNLAHDHLDRYATHADYVRANARLFQNQQAFDW 215

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  +      L        I    +F  +               +            E
Sbjct: 216 AIVQSEALAQLRLLDVPIPSKII---TFSANNRRADIFLDRGLLISRLPGWEGPLWNMDE 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +  G       N++  L +  +L   ++  + AL    P   R               I
Sbjct: 273 CLLRGSHNAE--NVMAALAVGHVLRIPLEEIVNALKTKAPGAHRF---EFVAEVNGVKYI 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  ++      L  + P   G     L      G+     + D+  ++S   + 
Sbjct: 328 NDSKATNVDAL---QKALLSVPPAPAGEPNIWL---IAGGKDKSLDYHDVGPLMSQR-VK 380

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +L G     ++ A           ++         S V GDV+++
Sbjct: 381 GAFLIGEAREKIRAAWSLFTPCTTVSSLLEAVGAAGKSAVPGDVILL 427


>gi|158334963|ref|YP_001516135.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
 gi|189028946|sp|B0CCD6|MURC_ACAM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158305204|gb|ABW26821.1| UDP-N-acetylmuramate--L-alanine ligase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 74/432 (17%), Positives = 147/432 (34%), Gaps = 50/432 (11%)

Query: 63  KGAGL---VVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +G+     V+ +T +               P+F   DVL AL        ++     IAI
Sbjct: 71  QGSSAPPQVICSTAIHEDNPEYQAAVQAGCPIFHRSDVLAAL--------MQEFPQSIAI 122

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  ++   L                            +  + + E   S   
Sbjct: 123 AGTHGKTTTSSLVGYLLLQASLD---PTIIVGGEVAAWGGNARTGESPYLVAEADES--- 176

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                     PHI VIT I   H  +++ ++++ S   E  +      T+ ++ D     
Sbjct: 177 --DGSLVKFFPHIGVITNIELDHPDHYTSLDQVVSIFQEFVDH---CHTLIVSVDCPTIA 231

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHM 292
                         YS     +AD+ ++      + + +EV +      ++    +G H 
Sbjct: 232 DRFLALATDQSMITYSLSSKVSADYTVQNIDYSGQGTIVEVLERGESLGQLELPLLGEHN 291

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   +  +     KAL  F   + R +       +     + + Y  +P+ 
Sbjct: 292 LSNALAAVAVGRYVGLEFPAIAKALRTFSGAKRRFE----IYGEAQGICLIDDYAHHPSE 347

Query: 353 MK---AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           ++   A+  + +Q +     +   V          + +F  + ++     +   ++ ++ 
Sbjct: 348 IQVTLASAKLQAQAAAATYSQSRVVAVFQPHRYSRAATFFQEFSQSFQDADLVVVTDIYS 407

Query: 407 SGF------HVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FY 458
           +G       +   L DA+  +  V     T+  +  F+Q  L  GDVV+       G   
Sbjct: 408 AGEANPGTINGKKLADAIAANHSVVTFQPTLTNVIDFLQGHLQSGDVVLF---LGAGDLN 464

Query: 459 RLINLLLEEFPA 470
           R+I  LL  F  
Sbjct: 465 RIIPDLLTHFQV 476


>gi|242278166|ref|YP_002990295.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio salexigens
           DSM 2638]
 gi|259509766|sp|C6BYG5|MURC_DESAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|242121060|gb|ACS78756.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio salexigens DSM
           2638]
          Length = 470

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 127/407 (31%), Gaps = 41/407 (10%)

Query: 52  DGHDFILHA---VQKGAGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
            G D +  A   V+      + +    +     L IP+         +  LA   RLR+ 
Sbjct: 57  HGADNVNDADVVVK---STAISDDNPELVKARELGIPII----PRAEM--LAELMRLRTG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +L    +  +     I     +            D  F I E 
Sbjct: 108 ---IAVAGTHGKTTTTSLLATIFTEAELDPTVIIGGRLNT---FGSNARLGDGQFLIAEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           + P I V+T +   HL  + G E I  +  +    +   G   +  
Sbjct: 162 DES-----DGSFLCLAPIITVVTNVDKDHLDFYGGQEAIDESFRKFMNSIPFYGMNVVCG 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD   + L             ++G +K    +           +     +    EV    
Sbjct: 217 DDPGVQRLLPSIKRP----CMTYGLNKGNRLRGEILSCEVRSLFKVYLDEKLLGEVSLAQ 272

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTL 341
            G H   N L  +G+      D    +  LS F     R ++           + G    
Sbjct: 273 PGKHNVLNALGAIGVSLEAGLDPKVILSGLSNFMGVGRRFEKKGESKGILVVDDYGHHPA 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             ++      S      ++    PH   R  A+ G+ C+  E +      L   +   + 
Sbjct: 333 EIQATIETAKSCFPQRRLVVAFQPHRFTRTEALFGEFCKTFEKADEL---LLTEIYPASE 389

Query: 402 SHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDV 446
             +   G + ++L   + +     V +    + +   + + L  GD+
Sbjct: 390 DPI--PGVNGMSLAQGIRQVSDTKVRFYPDFEMMQNELPNILKPGDL 434


>gi|30316124|sp|Q9F1N2|MURD_SHEVD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|11761333|dbj|BAB19200.1| MurD [Shewanella violacea]
          Length = 449

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 130/409 (31%), Gaps = 60/409 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  + +   + I V G  DV     +L   A       +I ITGS GK+T   ++ 
Sbjct: 76  IAIDTPEIRAAIDMDIEVIG--DV-----ELFARAIKDRSPCVIGITGSNGKSTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +    Y    +   +IG+P+    +   VD  I EL    L      TH +    A
Sbjct: 129 EMAKAAGLNY----AVGGNIGIPVLDL-LQKPVDLYILELSSFQL----ETTHSLNCISA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  +S +E    AK  +++  ++      +      + +            
Sbjct: 180 TCLNISEDHMDRYSDLEAYRQAKLALYDQSKRALFNREDSLTQPNDPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG +          +   +   +       +       +G H   N++  + +     
Sbjct: 230 NSFGLT-----SPVNDEWGVKDGKIVHGTTEIASLQDVAIVGSHNHANLIAAMALAYHAG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +  I+    F     R        N      +++S   N  +  AA+  L       
Sbjct: 285 IDKEPMIQVAKNFTGLAHRC---ELVANIAAVAYVNDSKATNVGATVAALEGL----GEH 337

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I ++G   +  + +               ++H+   G     +        H H +
Sbjct: 338 LGDIILIVGGDGKGADFTPLE-------TVFNKVAHLITLGKDGDKIAAL---KEHSHKA 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++M             GD+V++    +S             F +L   L
Sbjct: 388 DSMADAVKQAAELATAGDIVLLSPACASLDMYKNFMARGDDFRQLAQAL 436


>gi|325846778|ref|ZP_08169693.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481536|gb|EGC84577.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 115/392 (29%), Gaps = 36/392 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           N + + +  SL +PV       G  L  L    +       IA++GS GK+TT  M++  
Sbjct: 83  NNEELIAARSLGVPVV----TRGVFLGGLMKNYKNS-----IAVSGSHGKSTTTSMISKI 133

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L +  K    +   +      +       D +  + E          +      P I +I
Sbjct: 134 LMNSTKNPTILLGGDLDE---IEGNVHVGDEEILVTEACEYKGNIRYYY-----PSIGII 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  +  + +I        +  ++     LN ++   +L+           + +
Sbjct: 186 LNIDEDHLDYYKDLNDIIETFKSYLKNQDENSKTILNLNEENNKLVIDSVQGE----LIT 241

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           +G+               E       L  K     H  +      N+      +      
Sbjct: 242 YGQENPDADYNATNITFDEDGKPRFDLIMKDGSTEHFELSILGRHNINNACAAIISTLES 301

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES--------YNANPASMKAAISVLS 361
                   +     +G  +R +   N     +I +          N +  +      ++ 
Sbjct: 302 GVDIETIKNSIQSYKGLERRMQLLGNIDGCKIILDYGHHPSEIQVNLSALAEHTKGRLIC 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PR 420
              PH   R   +  +     + +    I      +                + DAL  +
Sbjct: 362 VWQPHTYTRTKRLFNEFVNCFDDADEVIITDI-FAAREPFDPSI----SSKDIVDALVEK 416

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                Y  T D +  ++ S + + D V+V  S
Sbjct: 417 GKSAKYLPTFDQVKEYVLSDIKENDQVIVTGS 448


>gi|228998694|ref|ZP_04158281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
 gi|228761162|gb|EEM10121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus mycoides
           Rock3-17]
          Length = 450

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 113/349 (32%), Gaps = 35/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S+A  + ITGS GKTTT  +    L              N   V   +A+   + + 
Sbjct: 107 YRISEAPFVGITGSNGKTTTTTLTFEMLKE---GQKHPVIAGNIGTVACEVAQAAKENEV 163

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L  +       +P IA    +  AHL      +E   AKA IF+   +   
Sbjct: 164 VVTELSSFQLMGVE----TFQPKIAAFLNLFEAHLDYHGTKKEYGLAKANIFKSQTEADY 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD     L A S    +    +         ++ +   C +   +  + +     
Sbjct: 220 SVINADDVDVMALSANSKGQKVLFSAT---------KVIEDGACIKDGALYFKGEKIVEV 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  +N+L  + I  +L  + +  I  L  F   + R                
Sbjct: 271 QDIVLPGKHNLENILAAMSIAKLLGVENEAIIAVLKRFTGVKHRL---EYVTTINNRKFY 327

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+S  +Q      G            G    +   DL       ++ 
Sbjct: 328 NDSKATNMLATEKALSAFTQPVILLAG------------GLDRGNEFDDLIPYF--EHVK 373

Query: 403 HVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +   G     L     ++    +   + ++       S   DGDV+++
Sbjct: 374 AILTYGQTAPKLVRVAEKAGIDIIESVDNLEEAVERAYSHSTDGDVILL 422


>gi|153830112|ref|ZP_01982779.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
 gi|148874424|gb|EDL72559.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae 623-39]
          Length = 451

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V L+G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAEKITADGSQFHVLLKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDKFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLAALQQK 451


>gi|83592288|ref|YP_426040.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodospirillum rubrum ATCC 11170]
 gi|118595685|sp|Q2RVU2|MURD_RHORT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83575202|gb|ABC21753.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 477

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 120/414 (28%), Gaps = 43/414 (10%)

Query: 68  VVVNTDMVASIG-SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           VV +  +  +      + V   +  +     + + AR R     + ITG+ GK+TT  ++
Sbjct: 77  VVWSPGIPHTFPQPHPVAVIAHERGVPLFCDIDLLARARQDCFFLGITGTNGKSTTTALI 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L + +           ++G P             + EL    L     L   +   +
Sbjct: 137 GHILKAARH----PVQVGGNLGTPALSFEPLPFHGTYVLELSSYQL----ELVPSLCCDV 188

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+  I P HL+   G++   +AK +IF    + G   +  DD     +         + 
Sbjct: 189 AVLLNITPDHLARHGGMDGYIAAKRQIFRCGPRPGVAVVCIDDEPSLAIHDALCRENGRK 248

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +          +         +          +  +    G H  QN           
Sbjct: 249 VVAVSTRALPRGGVGAVDGQLVDATQGRPRAVADLTTIATLPGAHNWQNAAAAYAACRQH 308

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D    ++A++ F     R               I++S   N  +   A+     +   
Sbjct: 309 GIDAKIIVEAMASFPGLPHRQ---ELVAEIDGVRFINDSKATNADAADKALRCYDTVYWI 365

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G+         E G +S   H               +L G    A +  L   + +  
Sbjct: 366 AGGQP-------KEGGIVSLEPHFHRMRQA--------YLIGQAAPAFERTLKGKVPLSQ 410

Query: 427 SETMD----GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             T+               + G VV++    +S             F  L+  L
Sbjct: 411 VGTLTRAVTEAAKAAWRDAIPGAVVLLSPACASWDQFSSFEHRGDIFRELVADL 464


>gi|302335883|ref|YP_003801090.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
 gi|301319723|gb|ADK68210.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Olsenella uli DSM
           7084]
          Length = 471

 Score = 57.2 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 111/351 (31%), Gaps = 26/351 (7%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            R       +AITG+ GKTTT  ++T  L S       +G+        L   R   D  
Sbjct: 110 WRESPD-RWVAITGTNGKTTTTSLVTAMLRSAGTDAVSVGNIGRLCTDELVRRR---DGA 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + EL    L      + L+ P  A +  + P HL     +E  A+AK  IF+ L    
Sbjct: 166 WFVAELSSFQL----ATSRLLHPRCAALLNVTPDHLEWHGSLEGYAAAKERIFQNLSGDD 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              ++ +D +      +  A G+    +       +    +     +         G+  
Sbjct: 222 LAVVSQEDGYCRDAIGRLEARGV---RTLHVGVREEPVSGEAAFVRDGWLTVRLDGGERR 278

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +      N    L   S+      +                R            
Sbjct: 279 VAPMANLPLRGEHNAQNMLAASSMALFLGASVEAVRRALEGFHPIEHRIEPVGEFAGVRF 338

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S++ A++   +      GR + +LG     G    +    LA  ++    
Sbjct: 339 VNDSKATNTDSVEKALTAFDR------GRIVVLLG-----GHDKGTDLGSLARAVNER-C 386

Query: 402 SHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 G     +  A+  +     V  +  +   FL    +   GDVV++
Sbjct: 387 KAAVCFGAAGERIARAVREAGGPTQVIRAPHLREAFLAAVGAARPGDVVLL 437


>gi|303234875|ref|ZP_07321500.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
 gi|302493993|gb|EFL53774.1| UDP-N-acetylmuramate--L-alanine ligase [Finegoldia magna BVS033A4]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 107/361 (29%), Gaps = 24/361 (6%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L  L    +       I ++GS GK+TT  M+   L   K   + +          +  
Sbjct: 103 FLGALMRNYKYS-----IGVSGSHGKSTTTSMIAKILIDAKVDPSILLGGKLDE---IQG 154

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + ++ + E        + +      P +A+I  I   HL  +  +  I +     
Sbjct: 155 NVHCGNSEYMLTEACEYKANILNYY-----PSMAIILNIDEDHLDFYKDLNHIVATFIGY 209

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L++     +N DD   E L +      I       K+      +   +  +    + 
Sbjct: 210 MKNLDENSKAIINIDDKNCEPLLSHIKGEIITFGIENEKADYNVHDITFNENGNPSFVVS 269

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +   K  E     IG H   + +  +        D+DT  K +  +H    R +     
Sbjct: 270 SEKFDKDEEFSLSIIGRHNIYDAVAAIIACYEFHIDIDTIRKNMKEYHNLHRRMETIGFY 329

Query: 334 LNQGFFTLIDESYNANPASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                 T           ++                PH   R   +L D           
Sbjct: 330 KGCEVKTDYGHHPTEIKNTLKALDEHKKGKFYCVFQPHTYSRTKMLLDDFANAFYDCDEV 389

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +      +            H   L + L    ++  Y +T +    +I+S + + D+V
Sbjct: 390 VVTEI-YAAREKFDSSI----HSTDLVEKLVKNGVNAKYYKTFEEARDYIRSKVCENDMV 444

Query: 448 V 448
           +
Sbjct: 445 L 445


>gi|240080774|ref|ZP_04725317.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Neisseria gonorrhoeae FA19]
 gi|268596891|ref|ZP_06131058.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
 gi|268550679|gb|EEZ45698.1| hypothetical protein NGEG_00968 [Neisseria gonorrhoeae FA19]
          Length = 458

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 121/411 (29%), Gaps = 47/411 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPV-----DVDFGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSKSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +       G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTAPSEGLIVCNGQQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +           +  +  ++ S+  +    K+  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------GHGWQIGEVNADGSFDVLLDGKKAGHVAWDLMGGHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                   DV TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHAGVDVQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A   SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPASLKEADQVFCYAGGADWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              P    +   +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 407 ALAPLGCRLRVGKDFDTFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|53726037|ref|YP_104093.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|67643628|ref|ZP_00442373.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|121599536|ref|YP_991820.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384790|ref|YP_001027313.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126449994|ref|YP_001082750.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|251766632|ref|ZP_04819734.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
 gi|254178949|ref|ZP_04885603.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|254202814|ref|ZP_04909177.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|254208156|ref|ZP_04914506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|254357640|ref|ZP_04973914.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|59798163|sp|Q62GS8|MURC_BURMA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222963|sp|A3MR64|MURC_BURM7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222964|sp|A2S5U4|MURC_BURM9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222965|sp|A1V0R7|MURC_BURMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52429460|gb|AAU50053.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           23344]
 gi|121228346|gb|ABM50864.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei SAVP1]
 gi|124292810|gb|ABN02079.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10229]
 gi|126242864|gb|ABO05957.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia mallei NCTC
           10247]
 gi|147747061|gb|EDK54138.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei FMH]
 gi|147752050|gb|EDK59117.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei JHU]
 gi|148026704|gb|EDK84789.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei
           2002721280]
 gi|160694863|gb|EDP84871.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei ATCC
           10399]
 gi|238525007|gb|EEP88437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei GB8 horse
           4]
 gi|243065315|gb|EES47501.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia mallei PRL-20]
          Length = 465

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 85/409 (20%), Positives = 142/409 (34%), Gaps = 36/409 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +               M    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGMG---DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
              +        P I VIT I   H+  +             F    +    + +     
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQA---FIEFTQRLPFYGSAVVCI 217

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGY 290
            +    +   L  K +  +G + +A  +    +    +    V+ +G+    VV +  G 
Sbjct: 218 DDANVRQIVPLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLNLPGL 277

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNAN 349
           H  QN L  + I + L        +AL+ F+    R +RY      G       + Y  +
Sbjct: 278 HNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLIDDYGHH 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWL 406
           P  M A I+      P        VL         ++    D   +   +    ++ V+ 
Sbjct: 338 PVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVYA 393

Query: 407 SGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           +G       +  AL  AL  +  V   +  T+D +   +     DGDVV
Sbjct: 394 AGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVV 442


>gi|294142806|ref|YP_003558784.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
 gi|293329275|dbj|BAJ04006.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           violacea DSS12]
          Length = 451

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 66/409 (16%), Positives = 130/409 (31%), Gaps = 60/409 (14%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  + +   + I V G  DV     +L   A       +I ITGS GK+T   ++ 
Sbjct: 78  IAIDTPEIRAAIDMDIEVIG--DV-----ELFARAIKDRSPCVIGITGSNGKSTVTTLVG 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +    Y    +   +IG+P+    +   VD  I EL    L      TH +    A
Sbjct: 131 EMAKAAGLNY----AVGGNIGIPVLDL-LQKPVDLYILELSSFQL----ETTHSLNCISA 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  +S +E    AK  +++  ++      +      + +            
Sbjct: 182 TCLNISEDHMDRYSDLEAYRQAKLALYDQSKRALFNREDSLTQPNDPM----------NQ 231

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG +          +   +   +       +       +G H   N++  + +     
Sbjct: 232 NSFGLT-----SPVNDEWGVKDGKIVHGTTEIASLQDVAIVGSHNHANLIAAMALAYHAG 286

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D +  I+    F     R        N      +++S   N  +  AA+  L       
Sbjct: 287 IDKEPMIQVAKNFTGLAHRC---ELVANIAAVAYVNDSKATNVGATVAALEGL----GEH 339

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I ++G   +  + +               ++H+   G     +        H H +
Sbjct: 340 LGDIILIVGGDGKGADFTPLE-------TVFNKVAHLITLGKDGDKIAAL---KEHSHKA 389

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++M             GD+V++    +S             F +L   L
Sbjct: 390 DSMADAVKQAAELATAGDIVLLSPACASLDMYKNFMARGDDFRQLAQAL 438


>gi|150020139|ref|YP_001305493.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
 gi|166224767|sp|A6LJK7|MURD_THEM4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149792660|gb|ABR30108.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermosipho
           melanesiensis BI429]
          Length = 426

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 116/370 (31%), Gaps = 69/370 (18%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELG 168
           +IA+TGSVGK+TT  ++   L+   +          +IG+P+       +  ++ + E+ 
Sbjct: 107 VIAVTGSVGKSTTVSLIYHLLNKKVR-----ALLAGNIGIPIAKLLNDNLRANYLVLEIS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L   +      +P+I+ I  I P HL+    +E   S+K +I     K      N +
Sbjct: 162 SFQLFWSKRF----KPNISSILNIYPNHLNWHPDMEHYVSSKFKIASFQSKDDVFVYNPN 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D +      K  A  +   + F                               ++  H  
Sbjct: 218 DEYIRKNLYKVSAKKVPFRFDFSIE----------------------------KLPIHLR 249

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                +N+     I+  +  +            P      R             ++S   
Sbjct: 250 YRQTVENVAAAKTILETMGYEFKWEFLEDFEKLP-----HRMEYVTEINGVKFFNDSKAT 304

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  ++  AI            +   +   M  +G+        L   +    +  + L G
Sbjct: 305 NAIAVIRAIENFDD-------KLHLI---MAGIGKNED---YTLLAKIIKEKVKILALVG 351

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCG 456
                ++  L   +     +T++     + S    GDV+++    +S             
Sbjct: 352 PIADEIEPYL-DGVRYFKVDTINQAVNQLFSMASRGDVIMLSPGGASFDAFKNFEERGEY 410

Query: 457 FYRLINLLLE 466
           F +L+  L E
Sbjct: 411 FKQLVMQLKE 420


>gi|91785292|ref|YP_560498.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
 gi|123168040|sp|Q13TZ3|MURC_BURXL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91689246|gb|ABE32446.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia xenovorans
           LB400]
          Length = 467

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 141/412 (34%), Gaps = 41/412 (9%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      K I  +G + +A  +    +    +       +  +  ++V + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESY 346
            G H  QN L  + I + L        +AL+ F+    R +RY          T    + 
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVFSEGSTNGAYTL 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISH 403
             +       ++     +      R  VL         ++    D  +VLS  +   ++ 
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLSTVDALVLTE 394

Query: 404 VWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 395 VYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDVV 446


>gi|312898960|ref|ZP_07758348.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
 gi|310620122|gb|EFQ03694.1| UDP-N-acetylmuramate--alanine ligase [Megasphaera micronuciformis
           F0359]
          Length = 462

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 124/402 (30%), Gaps = 47/402 (11%)

Query: 65  AGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +V++++      + + +     +P+    D   AL  +            IA+ G+ G
Sbjct: 67  AQVVIISSAIRDTNEELEAARKRQLPIIHRAD---ALVHIMTY------GKAIAVAGAHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML       K     +               +  +   G  E  ++   E    
Sbjct: 118 KTTTTSMLGQVFYESKMDPTLVIGGEVDY--------LQGNSVLGKGEYVIAEADESDGT 169

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                PHIAV+T I   H+ ++  IE +  A  +                          
Sbjct: 170 FLKEHPHIAVVTNIDADHMDHYGTIENVIQAFKDFIH---LLDPQTGLAVLCADNDKIRA 226

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 +   ++     AD++ +       +  +   +       V  +  G H   N L
Sbjct: 227 FLPEVKRPFVTYAIEAPADYKAKNIGYHEGKLIFDVYKHDEFLGSVELNVPGNHNVLNAL 286

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            T+ +        +    ALS FH  + R +             + + Y  +P  + A +
Sbjct: 287 ATVAVSLSCGISFEDIAAALSRFHGAKRRFQTKGHVNG----IWVVDDYAHHPTEIHATL 342

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGFHVL-- 412
           +    +     G    V          +Q    + ++         ++ V+ +G   +  
Sbjct: 343 AAARSM-----GTHRVVCLFQPHRYTRTQLLAEEFSKAFTCADKLILTDVYSAGEDPIPG 397

Query: 413 ----ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                L D +       V Y  T + L  +++ +    D+++
Sbjct: 398 IGGTFLTDKVKSATGQDVEYIGTKEELLEYLRKNARPRDLIL 439


>gi|158320410|ref|YP_001512917.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
 gi|167017286|sp|A8MH34|MURD_ALKOO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158140609|gb|ABW18921.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alkaliphilus
           oremlandii OhILAs]
          Length = 454

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 74/418 (17%), Positives = 130/418 (31%), Gaps = 56/418 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVL----GALNKLAVAARLRSKATIIAITGSVGKTTT 122
           LVVV+         L IP    +++       + ++ +A RL  +  I+AITG+ GKTTT
Sbjct: 73  LVVVS-----PGVPLDIPFI--ENLRARGIEIIGEIELAYRLA-QGHIVAITGTNGKTTT 124

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHL 181
             ++     +  +    +     +IGV      +    D   + E     L         
Sbjct: 125 TSLVGEIFKNAGRRTHVV----GNIGVAFISKALETTADDVIVIEASSFQL----ESIVD 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP +  I  + P HL+    +E    AK  IF+         +NYDD        + +A
Sbjct: 177 FRPQVGAILNLTPDHLNRHKTMENYQKAKFNIFKNQGAEDIAVINYDDVKLREESKQIYA 236

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +         +    +  K     +        +    +      G H  +N L    
Sbjct: 237 KKVYFSRRTLLEEGVFVEDGKIVALKDG-----HKKEIISKDDIFIPGNHNLENALAATA 291

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L  D+D     L  F   E R               I++S   NP +    I  ++
Sbjct: 292 MTLSLGVDIDVIQHTLKTFKGVEHRT---EIVDVIHGVRFINDSKGTNPDASIKGIEGIN 348

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G            G    S   +         + H+++ G     L +   + 
Sbjct: 349 TPILLIAG------------GYDKGSDFDEFIN-AFDGKVKHMFVYGETANTLMETAKKL 395

Query: 422 --IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
             I V   + +D          + GD V++    +S             F  ++  L 
Sbjct: 396 NFIDVTKVQNLDEAVKKAYDIAIQGDTVLLSPACASWDMYENFEMRGKHFKEIVANLR 453


>gi|154685939|ref|YP_001421100.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens FZB42]
 gi|166224750|sp|A7Z4E3|MURD_BACA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|154351790|gb|ABS73869.1| MurD [Bacillus amyloliquefaciens FZB42]
          Length = 451

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 102/345 (29%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + E
Sbjct: 112 NAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I +I  +  AHL      E    AK  ++    ++ T  +N
Sbjct: 169 LSSFQLMGTH----AFRPEIGLILNVFDAHLDYHHSRENYEKAKQNVYLHQLESDTAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L               GK+    F + +           + + G    +   
Sbjct: 225 QSDETVVRLAE------------SGKAGTVPFSVHQELSSGAFIKDGMLMFGDEAILPVD 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I    A N+   L  V+       +      V     G   R +           ++S 
Sbjct: 273 DIVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S          G            G    +   DL   +   N+  V  
Sbjct: 333 ATNILATSKALSAFKAPVILLAG------------GLDRGNGFDDLKPYMD--NVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|289423178|ref|ZP_06424993.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
 gi|289156509|gb|EFD05159.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Peptostreptococcus anaerobius 653-L]
          Length = 457

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 93/326 (28%), Gaps = 38/326 (11%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            M  D    + EL    L  I     +  P  + +  +   HL+    +E  A AKA IF
Sbjct: 156 EMAGDGAVLVTELSSFQLESID----MFSPTASTVLNLTEDHLNRHHTMENYAKAKARIF 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E         LNYDD     +    HA  +            D   R      + + +  
Sbjct: 212 ENQVDDTVCILNYDDPITRSMAEDCHADVVF-------FSRKDKFERGIYLDDDNNIIVN 264

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               +   +    +      N+   +  + +  A        + V    +    R     
Sbjct: 265 NEIEEIALLKADELSLPGGHNLENCMAAIGLTLALGVEIEVLVKVLKTFKAVEHRLEYVD 324

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   NP S   A+           G            G    S   +L E
Sbjct: 325 TVKGVKYVNDSKGTNPDSTIKAVQSYKDPIILIAG------------GYDKGSDFNELFE 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
           +   Y +  V + G     +++   +     ++    +            + D+V++   
Sbjct: 373 IAKDY-VRSVVILGQTGDLIEETARKHGFTDLYRVNDLKEAVEKSAQIAKEKDIVLLSPA 431

Query: 450 KSS---------NSCGFYRLINLLLE 466
            +S             F +L+  L +
Sbjct: 432 CASWGMYNNYEERGREFKKLVADLEK 457


>gi|229524524|ref|ZP_04413929.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
 gi|229338105|gb|EEO03122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio cholerae bv. albensis VL426]
          Length = 451

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 115/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMIA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +      + +  K  ++ S   V  +G+ +  V    
Sbjct: 223 DEALADVLQRGC-------WSETEFSGEQGEWQAKKITADGSQFHVLFKGERVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 274 SLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCQQPAQVSANMDEFVAMIAKEAQAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLLVALQQK 451


>gi|312196217|ref|YP_004016278.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
 gi|311227553|gb|ADP80408.1| UDP-N-acetylmuramyl-tripeptide synthetase [Frankia sp. EuI1c]
          Length = 522

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 72/221 (32%), Gaps = 53/221 (23%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPH-------------------YDGHDFILHAVQK 63
           P+  ++G++ DSR++ P + + A+ G H                    D           
Sbjct: 40  PEVVLHGVTHDSRAVQPGDLYAALPGSHAHGADFAAAAAASGAAAVLTD---------PA 90

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTT 121
           GA             GS+ +PV    D    + ++A     +     T++ +TG+ GKTT
Sbjct: 91  GAAA---------LAGSVDLPVVTTADPRSDVAQVADWLYGQPSRSLTLLGVTGTNGKTT 141

Query: 122 TKEMLTIALSSIKKT------------YACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +  ++   L +                   + S           A   V V+ G+    M
Sbjct: 142 SAFLVDAGLRAAGHRTGLLGTVETRIADERVDSVRTTPESSDLQALFAVMVERGVTAATM 201

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             S     +     +R   A+ T ++  HL     + +   
Sbjct: 202 EVSSHALAQHRVDGLRFAGALFTNLSQDHLDYHPTMRDYFE 242


>gi|22127502|ref|NP_670925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis KIM 10]
 gi|45443363|ref|NP_994902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108809539|ref|YP_653455.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Antiqua]
 gi|108810584|ref|YP_646351.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Nepal516]
 gi|145600344|ref|YP_001164420.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Pestoides F]
 gi|150260412|ref|ZP_01917140.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162420170|ref|YP_001607297.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Angola]
 gi|165928206|ref|ZP_02224038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937844|ref|ZP_02226405.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009082|ref|ZP_02229980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166212214|ref|ZP_02238249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401289|ref|ZP_02306789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421918|ref|ZP_02313671.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426438|ref|ZP_02318191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167469522|ref|ZP_02334226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           FV-1]
 gi|218927749|ref|YP_002345624.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis CO92]
 gi|229837056|ref|ZP_04457221.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|229840441|ref|ZP_04460600.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229843017|ref|ZP_04463167.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229900776|ref|ZP_04515900.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|270487854|ref|ZP_06204928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294502641|ref|YP_003566703.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|30316092|sp|Q8ZIF1|MURD_YERPE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595705|sp|Q1C212|MURD_YERPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595706|sp|Q1CMM9|MURD_YERPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|21960600|gb|AAM87176.1|AE013965_3 UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia pestis KIM
           10]
 gi|45438232|gb|AAS63779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108774232|gb|ABG16751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|108781452|gb|ABG15510.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Antiqua]
 gi|115346360|emb|CAL19232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CO92]
 gi|145212040|gb|ABP41447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Pestoides F]
 gi|149289820|gb|EDM39897.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           CA88-4125]
 gi|162352985|gb|ABX86933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           Angola]
 gi|165914256|gb|EDR32872.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919817|gb|EDR37118.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165992421|gb|EDR44722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166206960|gb|EDR51440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166960055|gb|EDR56076.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049314|gb|EDR60722.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054536|gb|EDR64344.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229682115|gb|EEO78207.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Nepal516]
 gi|229689893|gb|EEO81952.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229696807|gb|EEO86854.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705999|gb|EEO92008.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           Pestoides A]
 gi|262360671|gb|ACY57392.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D106004]
 gi|262364618|gb|ACY61175.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis D182038]
 gi|270336358|gb|EFA47135.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Yersinia pestis
           KIM D27]
 gi|294353100|gb|ADE63441.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pestis Z176003]
 gi|320016919|gb|ADW00491.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 438

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +   +         +IGVP     +  D  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSV----GGGGNIGVPALTL-LKQDNQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LTVLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRF---QLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFSGLTHFLQGDRI---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              V+  G     L    P    +   ETM      +   ++ GD V++    +S     
Sbjct: 366 --KVYCFGRDGGQLAALRPDVSQLT--ETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|119773493|ref|YP_926233.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           amazonensis SB2B]
 gi|119765993|gb|ABL98563.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           amazonensis SB2B]
          Length = 443

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 122/382 (31%), Gaps = 48/382 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + V+T  V +   + I V G  DV     ++   A       ++AITGS GK+T   ++ 
Sbjct: 80  IAVDTPEVRAAMDMGIEVIG--DVELFAREIQDMA-----PCVLAITGSNGKSTVTTLVG 132

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +  K      +   +IGVP     +    +  + EL    L     L  +      
Sbjct: 133 EMARADNKAV----AVGGNIGVPALEL-LGKGAELFVLELSSFQLETTHSLHCIA----G 183

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  ++ +E    AK  ++   + +     +                     
Sbjct: 184 TCLNISEDHMDRYTDLEAYRQAKLRLYPQSKLSVYNRDDA--------ATIPDEPRNTVS 235

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           +  G  +  D+ L   K     S +   L           IG H   N+L  + +     
Sbjct: 236 FGLGVPELDDWGLMDGKIYHGASEIMNLLD-------VALIGSHNHANLLAAMALCEAAG 288

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              +  +K    F     R        +      +++S   N  +  AA++ L+      
Sbjct: 289 ISREAMVKVAKEFTGLAHRC---ELVASHNSIAWVNDSKATNVGATVAALNGLA----EH 341

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G   + G   +     L        +SH+   G     +      +I V   
Sbjct: 342 LGDIILIAGGDGK-GADFEPLRGALGA------VSHLITLGRDGDKIAVLKEGAIKV--- 391

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
            TM       ++    GD+V++
Sbjct: 392 ATMAEAVEKAKALANPGDIVLL 413


>gi|212637106|ref|YP_002313631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
 gi|212558590|gb|ACJ31044.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella piezotolerans WP3]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 121/361 (33%), Gaps = 18/361 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++      G     +     ++       F + E   
Sbjct: 109 VLAVSGTHGKTSTASMLA---WILEDCGYEPGFLIGGVPQNFGVSARLGGSPFFVVEADE 165

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R      +P   VI  +   H   F  ++ I      +   +   G +    
Sbjct: 166 YDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGEGKVIWPA 225

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + +         +  +    +                 +           V    
Sbjct: 226 DAKSVQQVIELGCWSEQEMYHLNSAATGWYATNLSED---GHEFEVFLEGDSQGVVNWQL 282

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H  +N +M +     +    D AI+AL  F P + R +   C      +    + + 
Sbjct: 283 IGQHNIENAVMAIAAARHVGVKPDAAIEALVKFAPPKRRMELIGCVAGVEVY----DDFA 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++    + L+ +       ++ V+ +       S      LA  L+L + ++++ +
Sbjct: 339 HHPTAI---TTSLAGMRAKVGAGKVTVILEPRSNTMKSGVHKDTLANSLALASNAYLYQA 395

Query: 408 GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           G     +  A+   ++ V     +D +     +    GD ++V  SN  GF  L   LL 
Sbjct: 396 GNIDWDISAAMSTAAVPVEVLFDIDEIIAKAVAQACSGDTIIV-MSNG-GFGGLHQKLLA 453

Query: 467 E 467
           +
Sbjct: 454 Q 454


>gi|237746936|ref|ZP_04577416.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
 gi|229378287|gb|EEO28378.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacter
           formigenes HOxBLS]
          Length = 464

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 69/375 (18%), Positives = 119/375 (31%), Gaps = 39/375 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-----RMPVDVDFGI 164
           ++A+ G+ GKTTT  ML   L     +           GVPL        R   D  F +
Sbjct: 105 VLAVAGTHGKTTTTSMLAWILEDAGYSP-----GFLIGGVPLNFGISARLRGNADSSFFV 159

Query: 165 FELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E                  RP  A++  +   H   FS I  I +    +   +   G 
Sbjct: 160 IEADEYDTAFFDKRSKFVHYRPKTAILNNLEFDHADIFSDISAIETQFHHLVRTIAGNGR 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +N  D+  + +  +      +     G +             +E       +    + 
Sbjct: 220 LIVNVRDTALKRVIDRGCWSEKEWFGGSGNNGWT---------LAEAGDDGFVVFLDGVA 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                       N L  L  ++          +A++     +   +R  C       ++ 
Sbjct: 271 QGTVKWELTGEHNRLNALAAIAAARHVGVVPEQAIASLSRFKNVKRRMECLGEVRGISVY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLY 399
           D+  +   A       +  +I      R +AVL    +  ++G + Q     LAE     
Sbjct: 331 DDFAHHPTAIAATIAGLRRKIGARNHTRILAVLEPRSNTMKLGTMKQKLPHSLAE----- 385

Query: 400 NISHVWLSGFHVLA------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               V+  G H         L++AL          E +D L   I SS   GD ++V  S
Sbjct: 386 -ADLVFGYGAHSGKNALGWDLQEALGPLGEKARAFEDIDSLVTEIVSSARAGDHILV-MS 443

Query: 453 NSCGFYRLINLLLEE 467
           N  GF  +   +L+ 
Sbjct: 444 NG-GFGGIHQKILDR 457


>gi|308173485|ref|YP_003920190.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606349|emb|CBI42720.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 451

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 101/345 (29%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + E
Sbjct: 112 NAKFIGITGSNGKTTTTTLIYEMLKADSIKTLIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I +I  +  AHL      E    AK +++    ++ T  +N
Sbjct: 169 LSSFQLMGTH----AFRPEIGLILNVFDAHLDYHHSRENYEKAKQKVYLHQLESDTAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D     L     A  +    S   S  A  +        E                  
Sbjct: 225 QNDETVVRLAKGGKAGTVPFSVSQELSSGAFIKDGMLMFGDEAIL------------PVD 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I    A N+   L  V+       +      V     G   R +           ++S 
Sbjct: 273 DIVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S          G            G    +   +L   +   N+  V  
Sbjct: 333 ATNILATSKALSAFKAPVILLAG------------GLDRGNGFDELKPYMD--NVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|113869121|ref|YP_727610.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
 gi|113527897|emb|CAJ94242.1| UDP-N-acetylmuramate-L-alanine ligase [Ralstonia eutropha H16]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 63/405 (15%), Positives = 113/405 (27%), Gaps = 28/405 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+         L   +  V         L      R    ++A+ G+ GKTTT  ML  
Sbjct: 70  VVSRGNPLMEAILDRNLPYVSGP----QWLGEHVLAR--KWVLAVAGTHGKTTTTSMLAW 123

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFL--THLVRP 184
            L                 GVP     +    + DF + E                  RP
Sbjct: 124 ILEDAGYNP-----GFLVGGVPQNFGISARVTESDFFVIEADEYDTAFFDKRSKFVHYRP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A++  +   H   F  +  I +    +   +   G I +N  +     +  +     +
Sbjct: 179 RTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGQGRIVVNGVEESLARVLERGCWSEV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           +    FG     +          + ++           VV    G H   N L  +    
Sbjct: 239 EQ---FGVGDWRESDAAATAAPGKDAFDVWFGDAVQGTVVWDLQGTHNRMNALAAIAAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAISVLS 361
            +      AI++LS F   + R +    A        F     +       ++  +    
Sbjct: 296 HVGVPAAQAIESLSRFANVKRRMEVRGVAGGVTVYDDFAHHPTAIQTTLDGLRRRVGDAR 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            ++          LG M      S      +    +      +              P  
Sbjct: 356 ILAVLEPRSNTMKLGVMKAQLPASLEQADLVFGYGAPAGKDAL-----GWDLAGSLAPLG 410

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + +  L   ++++   GD V+V  SN  GF  +   LL+
Sbjct: 411 DKAAAFQDLGTLVQAVRAAAQPGDHVLV-MSNG-GFGGVHQKLLD 453


>gi|307244053|ref|ZP_07526172.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492577|gb|EFM64611.1| UDP-N-acetylmuramate--L-alanine ligase [Peptostreptococcus stomatis
           DSM 17678]
          Length = 453

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 141/416 (33%), Gaps = 48/416 (11%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              + +  + +    + +I +    +    L ++    R       IA+ G+ GKT+T  
Sbjct: 67  TAAISDDNEELVEAKNKNILLI---NRAAFLGQIMREYRNS-----IAVAGTHGKTSTTS 118

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L+      +     +        V   L+ +  +V  G  +  ++   E         P
Sbjct: 119 ILSTIFDYAQTDPTVL--------VGGNLSTIGGNVRIGNSKHFITEACEYVDSFLSFNP 170

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I ++  I   HL  FSG++EI ++  +  + L ++G   +N D+   + +     A   
Sbjct: 171 LIGIVLNIEEDHLDYFSGLDEIKASFNKFGKLLPQSGYFIINGDNENTKDIVYDVRA--- 227

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEV--QLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             I  FG++ + D  +   +       +                  G H   N    +  
Sbjct: 228 -NIIRFGQNPDNDAIISDIRYDENGYAIFNLKYKGVNLGGFHLSVYGLHNIYNATAAILA 286

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +   DVDT  K++  +H    R +            L+ + Y  +P  +KA ++    
Sbjct: 287 AIVSDIDVDTIRKSVLEYHGVGRRFE----KKGYYNDALVIDDYAHHPTEIKATLAAAKN 342

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD------ 416
           +           +         ++S   + +E  + Y+   V ++  +    KD      
Sbjct: 343 LRDKK-----LWVAFQPHTYSRTKSLFKEFSE--AFYSADKVIVTDIYAAREKDPGDISS 395

Query: 417 ------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                     ++   Y  T D +  +I+  L   DV +   +      R+   LLE
Sbjct: 396 KDLVQSLYQNNVDAIYLPTFDEIVDYIKDKLGPNDVFMTCGAGPI--NRVAEALLE 449


>gi|239983058|ref|ZP_04705582.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291454889|ref|ZP_06594279.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
 gi|291357838|gb|EFE84740.1| UDP-N-acetylmuramoyl-L-alanine ligase [Streptomyces albus J1074]
          Length = 467

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 140/401 (34%), Gaps = 42/401 (10%)

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             VVV++ +      L       IPV    D L AL               IA+ G+ GK
Sbjct: 71  TAVVVSSAIRPDNPELVRAAELGIPVVHRSDALAALMD---------GTRPIAVAGTHGK 121

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  +L ++L+++ +  +     +           +    +  + E   S         
Sbjct: 122 TTTTSILAVSLAALGRDPSYAIGGDLD---APGSNALHGTGEIFVAEADES-----DRSF 173

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
           H   P +A++  +   H +N++ IEEI  +       +   GT+ ++ D      L  + 
Sbjct: 174 HKYTPEVAIVLNVELDHHANYASIEEIHESFETFAARIVPGGTLVISADHEGARELTRRL 233

Query: 240 HALGIK--TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            A G+   T+ ++G++ +AD ++        +S + V++ G  +       G H A N +
Sbjct: 234 AAKGLPGVTVRTYGEAADADVRVVSIVPQGLRSEVTVRIDGAELTFGVSVPGRHYALNAV 293

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L     L         A++ +   + R +       +     + +SY  +P+ M A +
Sbjct: 294 AALTAAVALGIPAAEMAPAIAAYTGVKRRLQ----LKGEAAGVQVIDSYAHHPSEMTADL 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------G 408
             +           + VL     +   +Q    ++ + L L + S V            G
Sbjct: 350 EAIRGAVAADAR--LLVLFQPH-LFSRTQELGKEMGQALGLADASVVLEIYPAREDPIPG 406

Query: 409 FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                + DA       V            +      GD+V+
Sbjct: 407 VTSALIIDAARAAGADVTALADRSAAASVLAGMAKPGDLVL 447


>gi|290956552|ref|YP_003487734.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646078|emb|CBG69171.1| UDP-N-acetylmuramate--l-alanine ligase [Streptomyces scabiei 87.22]
          Length = 461

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 149/423 (35%), Gaps = 49/423 (11%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L       IPV    D   AL
Sbjct: 49  ALRALGATVHIGH--AAGHLADDATCVVVSSAIRADNPELARAAELGIPVVHRSD---AL 103

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L    R       IA+ G+ GKTTT  ML ++L  +    +     +  +        
Sbjct: 104 ARLMDGLRP------IAVAGTHGKTTTTSMLAVSLGELGLKPSYAIGGDLDV---PGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +  D +  + E   S     ++      P +A++  +   H +N++ ++EI ++      
Sbjct: 155 LHGDGEIFVAEADESDRSFHKYA-----PEVAIVLNVELDHHANYASMDEIYASFETFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ ++ D      L ++   L    + ++G+ ++AD ++        +S + V 
Sbjct: 210 RIVPGGTLVISADHEGARELTSR---LSGVRVVTYGEREDADVRVLSVVAQGLKSEVTVL 266

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L     L         AL+ +   + R +       
Sbjct: 267 LDGQEITFAVSVPGRHYAHNAVAALAAGVALGVPAAELAPALAAYTGVKRRLQ----LKG 322

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ + 
Sbjct: 323 EARGVQVIDSYAHHPTEMTADLEAM----RSAAGDARILVVFQPHLFSRTQELGTEMGQS 378

Query: 396 LSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V                   +  A      V        +   I      GD
Sbjct: 379 LALADASVVLDIYPAREDPIPGVTSELIIAAARSAGADVTALHDKAEVPGTIAGMAKPGD 438

Query: 446 VVV 448
           +V+
Sbjct: 439 LVL 441


>gi|117618995|ref|YP_858322.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|171460770|sp|A0KPX1|MURC_AERHH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|117560402|gb|ABK37350.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 484

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 154/412 (37%), Gaps = 36/412 (8%)

Query: 53  GHDFILHAVQ--KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKAT 109
            H F+ H+ +    A +VVV+T +      L +     +  V  A   LA   R R    
Sbjct: 65  AHIFVGHSAEHVNEASVVVVSTAIKQDNPELLAARELRIPVVRRA-EMLAELMRFRHG-- 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IAI G+ GKTTT  ++    +   +    +     +               + I E   
Sbjct: 122 -IAIAGTHGKTTTTSLVASIYAEADRDPTFVIGGLLNS---AGTNARLGSSRYLIAEADE 177

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S    +      ++P ++++T I   H+  +     ++ +   +    L   G   +  D
Sbjct: 178 SDASFLH-----LQPMVSIVTNIEADHMDTYGGDFSKLKATFIDFLHNLPFYGLAVVCVD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D     +  +      +   ++G S +AD Q+  + Q S +S   V+ +     EV  + 
Sbjct: 233 DPVIRGMLPEI----ARPTITYGLSDDADVQVLDFVQTSNRSRFRVRRKDAGELEVTLNL 288

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H A N    + + +      D  I+AL+ F     R ++Y          ++ + Y 
Sbjct: 289 PGIHNALNAAAAIAVATEDGIGDDAIIRALAKFEGVGRRFQQYGEFETGRGKAMLVDDYG 348

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HV 404
            +P+ +K  I+      P        V+         ++  + D A+VLS  ++     V
Sbjct: 349 HHPSEVKVTINAARAGWPEK----RLVMVFQPHRYTRTRDLYEDFADVLSKVDVLVMLEV 404

Query: 405 WLSGFHVLALKD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           + +G   +   D  AL RSI         +  T D +   +   + +GD+V+
Sbjct: 405 YAAGEEPIPGADGRALCRSIRSRGSLEPIFVATPDDVPAVLAGLVGEGDLVL 456


>gi|256788295|ref|ZP_05526726.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           lividans TK24]
          Length = 475

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 132/416 (31%), Gaps = 52/416 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTI 128
             +  + G   +PV+G  DV     +LA   R    R  A  +A+TG+ GKTTT +ML  
Sbjct: 87  KPLFTAAGQAGVPVWG--DV-----ELAWRLRGLNGRKPAPWLAVTGTNGKTTTVQMLAS 139

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +     A +G+    +   L       + D    EL    L         +R H A 
Sbjct: 140 ILKAAGLRTAAVGNIGVSL---LDAVTGEQEYDVLAVELSSYQLHWA----PSLRAHSAA 192

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +AP HL     +E  A+ K  I+EG      ++   D +  +L++A     G + I 
Sbjct: 193 VLNLAPDHLDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAIG 251

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               +              +++++E + +          +      N+   L    +  A
Sbjct: 252 FTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAGLARA 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
              +A               R     +      +D+S   N  + +A+++    I     
Sbjct: 312 FGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKATNTHATEASLAAYESIVWIAG 371

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G       D    G              +   +    L G     +++AL R        
Sbjct: 372 GLAKGATFDELVAG--------------AAKRLRGAVLIGADRALIREALARHAPEVPVV 417

Query: 429 TMD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            +D              +     GD V++    +S             F + +  L
Sbjct: 418 DLDRTDTGAMLQAVQEARRLARPGDTVLLAPACASMDMFTNYNQRGDAFAQAVREL 473


>gi|302877302|ref|YP_003845866.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
 gi|302580091|gb|ADL54102.1| UDP-N-acetylmuramate [Gallionella capsiferriformans ES-2]
          Length = 446

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 99/364 (27%), Gaps = 34/364 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++ + G+ GKTTT  ML   L                 GVP          +  F + E 
Sbjct: 109 VLGVAGTHGKTTTASMLAWILEHAGLNP-----GFLIGGVPQNFDISARITESPFFVIEA 163

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P  A++  +   H   F+ +  I +    +   +   G +  
Sbjct: 164 DEYDTAFFDKRSKFVHYHPRTAILNNLEFDHADIFADLFAIETQFHHLVRTVPGNGLVVS 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  ++  + +  +     ++                     ++       L   +     
Sbjct: 224 NGREAALQRVIERGCWTPVEAFGGDTGWNIDTGNQVTLNGVAQGELKWELLGEHNRMNAL 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +       + + LG+ ++           +            +              +
Sbjct: 284 AALAAARHAGVPVALGLAALSEFKNVKRRMEVKGIVNGITVYDDFAHHPT---------A 334

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   A ++  +     ++          LG M +    S              +   V+
Sbjct: 335 IDTTVAGLRHKVGAARILAVLEPRSNTMKLGVMKDALPGSLK------------DADQVF 382

Query: 406 LS-GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
              G      K AL          + +D L   I  S + GD ++V  SN  GF  + + 
Sbjct: 383 CYSGNLGWDAKSALAVMGDKAVVIDDLDTLIDVIAKSAMPGDHILV-MSNG-GFGGIHDK 440

Query: 464 LLEE 467
           LL++
Sbjct: 441 LLKK 444


>gi|118444015|ref|YP_877138.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           novyi NT]
 gi|158512394|sp|A0PXN6|MURD_CLONN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118134471|gb|ABK61515.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium novyi
           NT]
          Length = 458

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 125/382 (32%), Gaps = 53/382 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A I  ITGS GKTTT  ++   L +        G+  N +    +      + D
Sbjct: 111 FIKYCPAKIFGITGSDGKTTTTTLVYNILMTEGYKTWVGGNIGNPL---FSNIEEMKEED 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  ++   +      A++T ++P HL     ++E   AK  IF+  E   
Sbjct: 168 KVVLELSSFQLMTMKEEINC-----ALVTNLSPNHLDIHKDMDEYVDAKKNIFKYQEVND 222

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN D+     L  ++ +            + +  +  +         + +  +    
Sbjct: 223 LLVLNRDNDITNSLVKEAKSRV---------MQFSRKEEIESGAYLNGDKLVLLGKEVCA 273

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L    +VS   +    A  A +      G   R            
Sbjct: 274 LEDIKLKGMHNVENLLAAFCLVSEDASIESMAKVATTF----TGVEHRCEFVREIDGVKY 329

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S  ++P    A +          E   I + G     G         LAE   L  I
Sbjct: 330 YNDSIASSPTRTIAGLRAF-------EKPVILIAG-----GYDKHIPFEPLAEE-GLDKI 376

Query: 402 SHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
             + L+G     +KDA  +       +I ++  +  +      +    +GD++ +    +
Sbjct: 377 QALVLTGLTKNKIKDAFDKAMKDRGINIPIYMEDGFNEAIYRAKDIANEGDIITLSPACA 436

Query: 452 S---------NSCGFYRLINLL 464
           S             F  ++N L
Sbjct: 437 SFDMFPNFEVRGNKFKEIVNNL 458


>gi|313632489|gb|EFR99503.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL N1-067]
          Length = 470

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 95/299 (31%), Gaps = 39/299 (13%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PHI+VIT I  AHL   +   E   AK  I +   +   + +N+D    + L  ++ A
Sbjct: 195 FKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDFLVINWDQEELKNLTKQTKA 254

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +         Q        +   +    +           G H  +N+L ++ 
Sbjct: 255 QVIPFSTT---------QRLGQGSYVQNGNIMFDDEVIGARDSILLPGEHNLENVLASVA 305

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  +  L  F   E R    +  +        ++S   N  + ++A+    
Sbjct: 306 VAKTLGVANEEIMHVLETFKGVEHRT---QFVVEWQGRKFYNDSKATNILATQSALKGFK 362

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-R 420
                  G            G    +   +L       N+  + + G     +       
Sbjct: 363 NPVVLLAG------------GLDRGNSFDELLPFFK--NVKALIVFGETADKIGRVGKIA 408

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            I VHY + ++            GD++++    +S             F   I+ L+EE
Sbjct: 409 GIEVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAFMDAISELIEE 467


>gi|297583948|ref|YP_003699728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
 gi|297142405|gb|ADH99162.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus
           selenitireducens MLS10]
          Length = 455

 Score = 57.2 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 66/411 (16%), Positives = 123/411 (29%), Gaps = 55/411 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  ++     + IPV      +    ++A          +I ITGS GKTTT  M    L
Sbjct: 84  DHPLIKKALHMRIPVIT---EVEIAGEIAAC-------DMIGITGSNGKTTTTTMTASML 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +  K      +  N   V   +A   +  D  + EL    L          +PHIAV  
Sbjct: 134 ENSPKN---PKAAGNIGEVASKVADASLPEDILVVELSSFQLQGTNRF----KPHIAVFL 186

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +  AHL     +++ A AKA IF    K   +  N DD     L  +  A      +S 
Sbjct: 187 NLIEAHLDYHGTMDDYAQAKARIFRNQSKDDVLIYNADDPLVSSLAEQ--ADSTCIPFST 244

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +  +    ++          +  +                   N+   L   +      
Sbjct: 245 QRIVDGGSYIKDGDIVVLGEVLMRRDDF----------SLPGDYNLSNGLAAATAAMKAG 294

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +   V    EG   R +           + S   N  +   A+           G 
Sbjct: 295 ADPEQVRHVLASFEGVKHRLQYVDTVNGVRYFNNSKATNVPATVKALEAF-------PGE 347

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE-- 428
           RI ++    +        +  + +     ++  +   G     L +A   +      +  
Sbjct: 348 RIILIAGGLDRKLSFDDLYAPMGQ-----SVKGLVTYGETADKLAEAGRSAGVETILKTT 402

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           T++      +    + D++++    +S             F   +  L E+
Sbjct: 403 TLEEAVRKAEEISEESDIILLSPACASWDQFRTFEERGDTFIEAVARLKED 453


>gi|242035159|ref|XP_002464974.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
 gi|241918828|gb|EER91972.1| hypothetical protein SORBIDRAFT_01g029770 [Sorghum bicolor]
          Length = 761

 Score = 57.2 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 6/103 (5%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   +         + G+  D+  +A  + F  + G   DG   +  A +
Sbjct: 229 MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADK 285

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARL 104
           +GA  VV + D+          +  VDD+L AL  L A   R 
Sbjct: 286 RGAVAVVADQDLNIEGTLACRALVIVDDILAALRVLPACLYRR 328


>gi|257056716|ref|YP_003134548.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
 gi|256586588|gb|ACU97721.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharomonospora viridis
           DSM 43017]
          Length = 472

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 136/395 (34%), Gaps = 36/395 (9%)

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             V+V+T +      L       IPV        AL  L    R      +  I G+ GK
Sbjct: 77  SAVIVSTAIKEDNPELVAARERGIPVLHRA---EALAALMEGHR------VACIAGTHGK 127

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+T  MLT+AL   +   +     + +                 + E   S    + +  
Sbjct: 128 TSTTSMLTVALQHCRLDPSFAIGGDLNE---SGANAHHGQGGIFVAEADESDGSFLSYS- 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P +AVIT I P HL +    +   +   +    +E  GT+ +  DD     L  ++
Sbjct: 184 ----PSVAVITNIEPDHLDHHGTADAYHAVFHDFVRRIEPGGTLIVCADDEAASELATRA 239

Query: 240 HALGIKT-IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A G++   Y    +  AD ++  +    +   + + L+G+ + +     G HMA N + 
Sbjct: 240 EADGVRVLRYGRAATGEADARVLDYSPGEDGGTVRIVLRGEQLRMGVAVPGEHMAFNAVA 299

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L AD++  ++ L+ F     R +    A +       D +++    S      
Sbjct: 300 ALLAGLELGADLEGLVEGLAAFGGVRRRFEFKGRAGDVR--VYDDYAHHPTEVSA----Q 353

Query: 359 VLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
           + +     G GR + V    +        +   +   +     +  V+ +          
Sbjct: 354 LRAVRQAAGRGRVVVVFQPHLYSRTRAFAAEFAEALGLADEVVVLDVYGAREDPEPGVTG 413

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L  +  +  + HY    D     +      GDVV
Sbjct: 414 ELVASRIKGANAHYEPAFDRAVSLVADLAKPGDVV 448


>gi|51598838|ref|YP_073026.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
 gi|51573409|gb|AAU07434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBi]
          Length = 451

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 64/455 (14%), Positives = 140/455 (30%), Gaps = 85/455 (18%)

Query: 61  VQKGAGLVVVNTDMVAS-----------------------IGSLSIPVFGVDDV----LG 93
           ++ GA LV+ +    A                        I         V +       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 94  ALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L   L          G+    
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKNYPRAKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+       +   I EL                P +++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGISPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF       TI  +     +F   ++K+  +       F   ++  +  +    
Sbjct: 203 IIDKSKIFVNQASGITIIQDKAYYKYFSKFESKAKVILFSEFNPFVLDQDVFYYNKGEVY 262

Query: 266 CSE---QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            ++    S+ E Q+     +++   + Y++  ++  T  I++                  
Sbjct: 263 FNDNLIGSFSESQVVFMIPKLITFFVSYYLNMDLNHTFKILNKFR--------------- 307

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             G   R             +++ +  P S   ++     +  +     +   G   E+ 
Sbjct: 308 --GIEHRVEFVKLVQNVMFYNDTASTIPDSTVLSVKS---LKTNDNSINLIAGGTDKELD 362

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSL 441
             S      +  ++  +    + + G   + +   L +S I     +++     +     
Sbjct: 363 FSS---FRKIINLVKTW----ILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYAIKIS 415

Query: 442 VDGDVVVVK-SS-----------NSCGFYRLINLL 464
             GD+V+   +S               F  L+N+L
Sbjct: 416 SPGDIVLFSPASASFELFNNEFDRGLQFKNLVNML 450


>gi|21220566|ref|NP_626345.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           coelicolor A3(2)]
 gi|289772189|ref|ZP_06531567.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
 gi|30316144|sp|Q9S2W9|MURD_STRCO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|5689958|emb|CAB51995.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Streptomyces coelicolor A3(2)]
 gi|289702388|gb|EFD69817.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           lividans TK24]
          Length = 471

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 132/416 (31%), Gaps = 52/416 (12%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARL---RSKATIIAITGSVGKTTTKEMLTI 128
             +  + G   +PV+G  DV     +LA   R    R  A  +A+TG+ GKTTT +ML  
Sbjct: 83  KPLFTAAGQAGVPVWG--DV-----ELAWRLRGLNGRKPAPWLAVTGTNGKTTTVQMLAS 135

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +     A +G+    +   L       + D    EL    L         +R H A 
Sbjct: 136 ILKAAGLRTAAVGNIGVSL---LDAVTGEQEYDVLAVELSSYQLHWA----PSLRAHSAA 188

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +AP HL     +E  A+ K  I+EG      ++   D +  +L++A     G + I 
Sbjct: 189 VLNLAPDHLDWHGSMEAYAADKGRIYEG-NHVACVYNVADKATEDLVRAADVEEGCRAIG 247

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
               +              +++++E + +          +      N+   L    +  A
Sbjct: 248 FTLGTPGPSQLGVVEGLLVDRAFVEDRQKNAQELAEVSDVNPPAPHNIANALAAAGLARA 307

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
              +A               R     +      +D+S   N  + +A+++    I     
Sbjct: 308 FGVSAAAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKATNTHATEASLAAYESIVWIAG 367

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           G       D    G              +   +    L G     +++AL R        
Sbjct: 368 GLAKGATFDELVAG--------------AAKRLRGAVLIGADRALIREALARHAPEVPVV 413

Query: 429 TMD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            +D              +     GD V++    +S             F + +  L
Sbjct: 414 DLDRTDTGAMLQAVQEARRLARPGDTVLLAPACASMDMFTNYNQRGDAFAQAVREL 469


>gi|319789776|ref|YP_004151409.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
 gi|317114278|gb|ADU96768.1| UDP-N-acetylmuramate/alanine ligase [Thermovibrio ammonificans
           HB-1]
          Length = 446

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 126/407 (30%), Gaps = 46/407 (11%)

Query: 63  KGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA +V+ ++ +  S         L IPV    DV      ++   RL+     IA+ G+
Sbjct: 58  KGADVVIHSSAVKPSNPEIVEAKKLGIPVIPRADV------VSDIMRLKEG---IAVGGT 108

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L S   +          +              + + E   S      
Sbjct: 109 HGKTTTSSMIATILHSAGTSPTI--LVGGRLPFLGGDNAALGSGKWIVIEADES-----D 161

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P ++VIT +   HL  +   EEI  A       +   G +FL  +      + 
Sbjct: 162 GTFLKLTPTLSVITNVDNDHLDFYGSPEEIDKAFTAFANRVAFYGKVFLCIECPRVRKIS 221

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K +        ++G            +      +       K  +V  +  G H   N 
Sbjct: 222 PKVYKRKE----TYGFEGADFTAEEVTQVGLSSIFTVRYKGKKLGKVRLNVPGKHNVLNA 277

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +          A +AL  F     R +               + Y  +P  +KA+
Sbjct: 278 LGAIAVALETGVPFKEAAEALGQFRNASRRMELKGTVKG----ITFFDDYGHHPTEIKAS 333

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHV 411
                 I      RR+ VL         ++    +  E L      +++L      G   
Sbjct: 334 YEA---IKSAFPNRRVVVLFQPHRF-SRTKLLWREFVETLK--GFENLFLCDIYPAGEEP 387

Query: 412 LALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +   D   L       Y+  ++     +   L  GDV +   S   G
Sbjct: 388 IEGIDSRKLASECKAVYAGGLEEACKLMAKVLRPGDVFL---SLGAG 431


>gi|107021687|ref|YP_620014.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116688633|ref|YP_834256.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
 gi|105891876|gb|ABF75041.1| UDP-N-acetylmuramate [Burkholderia cenocepacia AU 1054]
 gi|116646722|gb|ABK07363.1| UDP-N-acetylmuramate [Burkholderia cenocepacia HI2424]
          Length = 461

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 117/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          R   AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRLRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +      G+  EV    
Sbjct: 222 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 279 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++   I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 335 HHPTAIDTTIAGLRARIGRQNARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|297242762|ref|ZP_06926700.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
 gi|296888973|gb|EFH27707.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis AMD]
          Length = 601

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 70/502 (13%), Positives = 135/502 (26%), Gaps = 88/502 (17%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
            I         + D+R I P    F IKG      +++L+A  KG    V          
Sbjct: 66  NIDADECFTNATYDTRDITPGTLLF-IKGNFQ--SEYLLNADNKGLAAYVAEQSYAQYTK 122

Query: 80  SLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKK-- 135
           ++      V D   A++ LA A     + K TI+ ITG+ GKTTT       L+S     
Sbjct: 123 AVG---LIVTDAKKAMSVLAAAFFGNPQEKLTIVGITGTKGKTTTAYFTHAILNSHSHGK 179

Query: 136 ---------TYACIGSYNNHIGVP-----LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
                             +++  P       + R  VD       + +S         + 
Sbjct: 180 AALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAYKVNRVYG 239

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDS--------- 230
           ++  +A    I+P H+S       E+    K +I    ++                    
Sbjct: 240 LKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLLLQDAERN 299

Query: 231 -----FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS--------------- 270
                 F  +K            +F    +            + +               
Sbjct: 300 NVLVTTFARIKKDEIESDACENDNFDDIDDDRINYCAPANDDDYTELLTPDYIAMPVENS 359

Query: 271 --------------------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                               + E        E      G    +N L  + I   L  + 
Sbjct: 360 ESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIAGELGINQ 419

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           DT + AL      +  G+             + + Y  N  S K+ +  + +       R
Sbjct: 420 DTDLHALHAIENVKISGRMEVFKDTHSNMIAVVD-YAHNYISTKSVLDFVEERYGKFNPR 478

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALP-----RS 421
              + G     G+ +     ++ E         ++ +       V+ + + +       +
Sbjct: 479 ITLITGS---TGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVTDPN 535

Query: 422 IHVHYSETMDGLFLFIQSSLVD 443
           +             +  +   +
Sbjct: 536 VSSRIIIDRAEAIEYAYNDAAN 557


>gi|261254015|ref|ZP_05946588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
 gi|260937406|gb|EEX93395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio orientalis CIP 102891]
          Length = 451

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 108/362 (29%), Gaps = 23/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  +         +S  +        R  K  ++ S  +V  Q +  EV     
Sbjct: 223 DIALEDVLQRGC-------WSETEFTGQQANWRAEKLIADGSEFKVFFQDE--EVGIVKW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  +        T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIGAARHVGVTPDLACESLAKFINTKRRLELKGQVNGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +      +  G    +         + +  H D A   SL     V+L  
Sbjct: 334 -----PTAIELTLGGLRNKVGSDNIIAVLEPRSATMKRGVHKD-ALAASLAKADQVFLYQ 387

Query: 409 FHVLA--LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +   +KD   +       S  +D L   I S    G  ++V  SN  GF  +   LL
Sbjct: 388 PDSIDWSVKDIASQCHQPADTSADVDELVAKIVSHAQAGSHILV-MSNG-GFEGIHGKLL 445

Query: 466 EE 467
           E+
Sbjct: 446 EK 447


>gi|255037244|ref|YP_003087865.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
 gi|254950000|gb|ACT94700.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dyadobacter
           fermentans DSM 18053]
          Length = 456

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 119/384 (30%), Gaps = 45/384 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      + A +IAITGS GKTTT  +    L +             +IG     A  
Sbjct: 104 EFASRY---TDAKLIAITGSNGKTTTTLLTYHLLKTAGLNV----GLAGNIGDSFAWAVA 156

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               ++ + E+    L           P+I+++  I P HL  +    +    +K  I  
Sbjct: 157 EKQFEYYVLEISSFQLD----NIIDFHPYISLLLNITPDHLDRYGYDFQNYVDSKFNIIR 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             + +       +    +    K +    +   S   +  A   L      S+       
Sbjct: 213 NQQASDYFIYYKESEVIQKELEKRNPAVGRIEVSLDNALEAGSYLENGTLVSK----ING 268

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              +         G H A N L  + +  +L  D +   + L  F     R ++      
Sbjct: 269 NALEIAFAELPVKGPHNAINALSAISVAQLLGIDPEKIREGLKSFTNAPHRLEQVEVIGG 328

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T I++S   N  S+  A+    Q      G            G    + +  + E 
Sbjct: 329 V---TYINDSKATNVDSVFYALGSFDQPVILIAG------------GVDKGNDYSQI-EA 372

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVVV---KS 451
           L    +  + + G   + L+      +   Y+ + +       +   V GDVV++    +
Sbjct: 373 LVKSKVKGLIVLGKDPVKLETYFAGKVPQIYATDDVRDAVNKGREWGVPGDVVLLSPACA 432

Query: 452 S---------NSCGFYRLINLLLE 466
           S             F   +  L +
Sbjct: 433 SFDLFKNYEDRGDQFKAAVRNLTQ 456


>gi|313622984|gb|EFR93280.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL J1-023]
          Length = 461

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 44/322 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L          +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 167 SDQYISMELSSFQLM----GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQT 222

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q  +     +   +    + 
Sbjct: 223 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLEQGSYVQNGNIMFDDEV 273

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 274 IGSRDSILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRT---QFVVEWQG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 331 RKFYNDSKATNILATQSALRGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 377

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            N+  + + G     +        I VHY + ++            GD++++    +S  
Sbjct: 378 -NVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILLSPACASWD 436

Query: 453 -------NSCG-FYRLINLLLE 466
                          +  L+ E
Sbjct: 437 QYRTFEVRGNAYMDAISELIEE 458


>gi|78356090|ref|YP_387539.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|109892703|sp|Q313Q2|MURC_DESDG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78218495|gb|ABB37844.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 454

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 117/386 (30%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IP+         +  LA   RLR     IAI G+ GKTTT  +     
Sbjct: 77  DNPEVQAAQEKGIPII----PRAEM--LAELMRLR---KGIAIAGTHGKTTTTSLTAAIF 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I     +            +   G  E  ++   E       + P + V+T
Sbjct: 128 DEAGTDPTVIIGGRLN--------AYGSNARLGEGEFLLAEADESDGSFLCLSPVVNVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  +   + I +A       +   G   +  DD+    L  +     +    ++
Sbjct: 180 NVDLDHVDFYHDQQAIDTAFINFMNKVPFYGMNVVCGDDAGVRRLLPQIKRPVL----TY 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G   +   +           +  +       EV     G H   N L  +G+        
Sbjct: 236 GFGPDNQLRAETVTCGETSRFRVLLHGEDLGEVNLVQPGRHNVLNALAAIGVGLETGIAA 295

Query: 311 DTAIKALSVFHPKEGRGKRYRCAL------NQGFFTLIDESYNANPASMKAAISVLSQIS 364
           D  ++ L+ F     R +R           + G       +  A   +      ++    
Sbjct: 296 DVCLRGLANFRGVGRRFERKGERGGVLVVDDYGHHPAEIAATLATARTCYPGRRLVVAFQ 355

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A+ GD C+  +      +      S   I      G    +L   + +  + 
Sbjct: 356 PHRFSRTKALFGDFCKAFDNVDKLLLTEIYPASEAPI-----PGVSGQSLAQGIRQVSNT 410

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
            V Y +  D +   +  +L  GD+ +
Sbjct: 411 DVDYFQDFDAMRAALPETLRPGDLFL 436


>gi|37527517|ref|NP_930861.1| UDP-N-acetylmuramate--L-alanine ligase [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|44888164|sp|Q7N148|MURC_PHOLL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|36786952|emb|CAE16026.1| UDP-N-acetylmuramate--alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 491

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 66/404 (16%), Positives = 132/404 (32%), Gaps = 43/404 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M
Sbjct: 86  SAILADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAIAGTHGKTTTTAM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++   +        +                     + I E   S    +      ++P 
Sbjct: 137 ISSIYAQAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-----LQPM 188

Query: 186 IAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AVIT I   H+       E +          L   G   +  DD   + L  +      
Sbjct: 189 VAVITNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVKELIPRV----G 244

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + I ++G S+ AD ++  ++Q  ++  +   +     ++VV +  G H A N    + + 
Sbjct: 245 RYITTYGFSEEADVRITHYQQKGAQGYFTVSRQDMADLKVVLNAPGRHNALNAAAAVAVA 304

Query: 304 SILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNANPASMKAAIS 358
           +         + AL+ F     R              +G   ++ + Y  +P  + A I 
Sbjct: 305 TEEGISGSDILAALAGFQGTGRRFDFLGNFSLEHVNGKGGSAMLVDDYGHHPTEVDATIK 364

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---------SHVWLSGF 409
                +   + R + +          ++  + D A VL+  ++           V + G 
Sbjct: 365 AAR--AGWPDKRIVMIFQPHRY--TRTRDLYDDFANVLNQVDVLLMLDVYSAGEVVIPGA 420

Query: 410 HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +L   +     +          +   +   L   D+++V+ 
Sbjct: 421 DSRSLCRTIRSRGKLDPILVSDPAKVTAVLAQVLDGHDLILVQG 464


>gi|260430914|ref|ZP_05784885.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414742|gb|EEX08001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 464

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 102/346 (29%), Gaps = 31/346 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TGS GK+TT  ++   L+   +          +IG  +       D    + E
Sbjct: 119 PPRVIAVTGSNGKSTTAALIHHILTEAGR----EAQLAGNIGRGVLDIDPGGDGSVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L          L   + P +AV T ++P HL    G+    +AK  +F        +   
Sbjct: 175 LSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRAVIGV 230

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +         L   +    +  +    K     +Q+   K    +     Q     +  
Sbjct: 231 DEIEGAFLAGQLAEGAGDDRVIRVSVARKLAGPGWQVFARKGFLSEYRKGRQAASIDLRD 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H  QN          L         AL  +     R    +        T ++
Sbjct: 291 IKGLPGTHNHQNACSAYAACRALGLAPKMIEDALHSYPGLPHRS---QVIAEANGVTFVN 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S   A+    +I     G      G +  + + +               +  
Sbjct: 348 DSKATNVDSAVKALGAFKKIRWICGGLEKE--GGIAALNDATDE-------------VLC 392

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ G    A   A+  S+      TM             G+ V++
Sbjct: 393 AYVIGREAAAF--AMQLSVETRVCTTMAEAVEQAMRDAAPGETVLL 436


>gi|242278169|ref|YP_002990298.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121063|gb|ACS78759.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           salexigens DSM 2638]
          Length = 434

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 136/420 (32%), Gaps = 81/420 (19%)

Query: 63  KGAGLVVVN-----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            GA ++V +      ++   IG+L       +       +LA       K   IAITG+ 
Sbjct: 77  AGADVIVASPGIPARNIAPFIGNLPERAIISE------LELASWFANEPK---IAITGTN 127

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIR 176
           GKTTT  ++   L    +T         + G P           D  + E+    L    
Sbjct: 128 GKTTTTALIKHILEESGRT----AFAGANYGTPLSEFIYEDGKADVLVLEVSSFQL---- 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
               L RP  A++  I+P HL+    ++E   AK +IFE   +              +L 
Sbjct: 180 QNCRLFRPQAAILLNISPNHLNYHEDMDEYLQAKLKIFERQSE----------DELAILP 229

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A          ++  + K  D    + +                          H   N+
Sbjct: 230 ADMKGELDPASFTKAEVKWFDGSTFEEQPNLPG--------------------KHNCLNI 269

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                 +  +    +     +  F     +  R +   +      I++S   N  +++AA
Sbjct: 270 EAAWLALEKIGLTREEFEAGMKTFVG---KPHRIQDIGSVDGIRFINDSKGTNLDAVRAA 326

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++          G    +LG + + G++      ++        ++ V L G      + 
Sbjct: 327 LNSFD-------GPVRLLLGGVFKGGDV-----REIIP-AMRGKVAEVGLFGAGREHFEP 373

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           AL     + + E ++     + ++   GD +++    +S             F R++  L
Sbjct: 374 ALKDEFKISWHENLEKAVRALFANSKAGDTILLSPATASFDAYTGYPARGDDFKRIMEAL 433


>gi|319941793|ref|ZP_08016115.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804726|gb|EFW01593.1| hypothetical protein HMPREF9464_01334 [Sutterella wadsworthensis
           3_1_45B]
          Length = 508

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 121/396 (30%), Gaps = 34/396 (8%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR-SKATIIAITGSVGKTTT 122
           GA   V      AS     IP+  V ++     +LA   R +     +I ITG+ GKTTT
Sbjct: 96  GAAASVC-----ASARKAGIPI--VGEIELFAQELAYLKRTQGYAPKVIGITGTNGKTTT 148

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
             + T   ++        G+   +    L+ A       D  + EL    L      TH 
Sbjct: 149 TTLTTKMAAAAGLYAVAAGNIGPNAVAELSKAEAAGALPDIWVLELSSFQL----ETTHT 204

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-------EGLEKTGTIFLNYDDSFFEL 234
           +    A +  I   HL     IE  A AK  IF          E    +         E 
Sbjct: 205 LNCTSAALLNITEDHLDWHGSIEAYAHAKGRIFAPDTVRVVNREDPLVMAELEKVDDREH 264

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A+    G       G+                             E      G H   
Sbjct: 265 SAARCFTFGATKPQKEGELGLMMAAHASQGYWLGLRDQMEVDVLFLPEFELLIRGRH--- 321

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +  L  + ++T        A+ V     G   R            ID+S   N  ++ 
Sbjct: 322 NAMNALAALGLITGAGIETRPAIGVLRTYRGEPHRVELVRTIEGRDFIDDSKGTNVGAV- 380

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                 +      +GRRI +L      G+       +L   ++        L G     +
Sbjct: 381 ----AAAVCGLAAQGRRILILMGGDGKGQDFTPLAKELKGRVAFAA-----LIGRDAAKI 431

Query: 415 KDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++A+ P  +     +T++    ++      GD +++
Sbjct: 432 REAVSPAGVATETFKTLEAAEDWLWEKSRPGDQILL 467


>gi|304396561|ref|ZP_07378442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
 gi|304356070|gb|EFM20436.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pantoea sp. aB]
          Length = 438

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 121/376 (32%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGLPALSL-LQSPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ ++   A +  ++  H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTYSLKAAAATVLNVSEDHMDRYPLGMQQYRAAKLRVYENAQIC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+         +     LR   +    +     +   +
Sbjct: 210 IVNADDALTMPVRGADTRCVSFGVDFGDYHLNKQQGSIWLRVKGEKVLNTAEMKMVGQHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +     + ++   +                    ++         
Sbjct: 270 YTNALAALALADAVGLPRASSLAALTHFNGLAHR---------------FQLVHEHQGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    ++G     G+   +    L   L   N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----QGTLWLLMG-----GDGKSADFTPLIPWLQGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G    AL  AL   I V  +ETM      I   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGDALA-ALRPDIAVR-TETMRQAMEQIAPQVNAGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 422 NFEQRGEQFAQLAKEL 437


>gi|225175499|ref|ZP_03729493.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168828|gb|EEG77628.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 454

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 85/293 (29%), Gaps = 27/293 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             +  + EL    L      T   RP I+ I  + P H+     +E    AK +IF   +
Sbjct: 157 KYEAVVAELSSFQL----EATIDFRPQISAILNLTPDHMDRHKTMEAYVEAKEKIFANQK 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +    LN DD     L+ +                    Q+ +         +    + 
Sbjct: 213 ASDVTVLNADDPRTYALRGRPRCRVYLFSRR--------RQVERGAFVRNGHVVVRDGEN 264

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +        I    A N+   L    +                   G   R       G 
Sbjct: 265 EETVCGVDEIRIPGAHNLENALAAALLAWLGGVAVEVIAKTLKNFPGVSHRLEHVREFGG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            T I++S   N  +   A+   +          + + G   + G+ S             
Sbjct: 325 VTYINDSKGTNSDAAIKALEAFAAPK-------LLIAGGYDKGGDFSS------FAAAIK 371

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV 449
            +  +V L G     L  AL    +  Y  +++++        +   G+VV++
Sbjct: 372 KHARYVVLLGEVAGRLAQALDEVDYHAYSTADSLEDAVKIASDTAQSGEVVLL 424


>gi|15677021|ref|NP_274173.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|15677057|ref|NP_274209.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226382|gb|AAF41532.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|7226420|gb|AAF41567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis MC58]
 gi|325140356|gb|EGC62878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis CU385]
 gi|325200178|gb|ADY95633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 458

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 125/414 (30%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNLGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                +  D+ TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A  +SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
              P    ++  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 407 ALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILV-MSNG-GFGGIHGKLLEALR 458


>gi|125975108|ref|YP_001039018.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|256003237|ref|ZP_05428229.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281418473|ref|ZP_06249492.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|189029009|sp|A3DIP6|MURC_CLOTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125715333|gb|ABN53825.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium thermocellum
           ATCC 27405]
 gi|255992928|gb|EEU03018.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           2360]
 gi|281407557|gb|EFB37816.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum JW20]
 gi|316939274|gb|ADU73308.1| UDP-N-acetylmuramate/alanine ligase [Clostridium thermocellum DSM
           1313]
          Length = 469

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 125/393 (31%), Gaps = 38/393 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +A   SL IP     D    L ++            +A++G+ GKTTT  M
Sbjct: 79  AAVKSDNPELAKAKSLGIPTL---DRATLLGEIMKKY-----PFSVAVSGTHGKTTTTSM 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +                    +          + + E       E         P+
Sbjct: 131 ISLIMLKSALDPTIHIGGELD---AIGGNTRIGSNKYFVAEAC-----EYVESFLKFHPY 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+  I   HL  F  IE I +A  +    + + G +    DD     +    H   I 
Sbjct: 183 LAVVLNIEADHLDYFKDIEHIKNAFLKFIRLVPENGYVVACADDQNVLSILKDVHC-NII 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T     K+     +   + +    ++  ++   +   +     G H   N L ++     
Sbjct: 242 TFGLNSKNAMWTAEDISFNENGFAAFTVLKDNERITNIQLKVPGIHNISNALASIAACYA 301

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV------ 359
           L   ++   K L  +     R +             + + Y  +P+ +KA +        
Sbjct: 302 LGCSIENIKKGLESYTGIHRRFE----LKGIENNIKVVDDYAHHPSEIKATLKAARSGNY 357

Query: 360 ---LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALK 415
               +   PH   R   +L +  +  + +    I         +      +G  H   L 
Sbjct: 358 PRIWTVFQPHTYTRTKFLLDEFSKAFKDTDKVIITDIYSAREKD------TGEIHSRILA 411

Query: 416 DALPRSIH-VHYSETMDGLFLFIQSSLVDGDVV 447
           + +  +     Y    +G+  +++ +   GD++
Sbjct: 412 EKIRENGQDAIYLPDFEGIVEYLKKNASPGDLI 444


>gi|325130233|gb|EGC53003.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis OX99.30304]
          Length = 457

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 65/413 (15%), Positives = 119/413 (28%), Gaps = 51/413 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIVCNGRQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +    K+  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKKAGHVAWSLMGGHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +        D+ TA +ALS F   + R +             F     +       ++ 
Sbjct: 297 VIAAARHAGVDIQTACEALSTFKNVKRRMEIKGTVNGITVYDDFAHHPTAIETTIEGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A  +SL   + V+    G     
Sbjct: 357 RVGNARILAVLEPRSNTMKLGTMKS------------ALPVSLKEANQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            +   P    ++  +  D     I  +   GD ++V  SN  GF  +   LL+
Sbjct: 405 AEALAPLGGRLNVGKDFDAFVAEIVKNARTGDHILV-MSNG-GFGGIHTKLLD 455


>gi|217979587|ref|YP_002363734.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Methylocella
           silvestris BL2]
 gi|217504963|gb|ACK52372.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylocella
           silvestris BL2]
          Length = 461

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 57/382 (14%), Positives = 114/382 (29%), Gaps = 45/382 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R+   A +IAITG+ GK+TT  ++    +++            +IG P+     P     
Sbjct: 109 RIAPDAPLIAITGTNGKSTTTALIAHLFATLGFDVQIG----GNIGTPILALEPPSSERV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E     +     L   + P + V+  + P HL     +E  A+ KA +    +    
Sbjct: 165 HVVECSSYQID----LAPSLDPTVGVLLNVTPDHLDRHGTMENYAAIKARLVSAADHAVI 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +          A +  L  +     G S     +           +     +   + 
Sbjct: 221 GVDDAFC------AAIAKKLRAEGHDVIGVSAAGMLEGDGVVFEGGALYWRGGRRLDLIA 274

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +        A N       V++L A                G   R       G   L+
Sbjct: 275 DLSGVGSLRGAHNGQNAAASVAVLHAIGLDGAGLAKGLRSFAGLAHRMEEVGKYGKALLV 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+     I          +LG   + G + +S      ++       
Sbjct: 335 NDSKATNADAAEKALLSFDNI--------FWILGGRAKQGGI-ESLKPLFGKIAKG---- 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ----SSLVDGDVVVV---KSS--- 452
             +L G         +  +  V + +T++            S     VV++    +S   
Sbjct: 382 --YLIGEASHDFAKTIGDAFPVAFCQTLENALPLAARDAIESARAEPVVLLSPACASFDQ 439

Query: 453 ------NSCGFYRLINLLLEEF 468
                     F  +   L++ +
Sbjct: 440 FPDFEKRGDRFCEIARALIKAY 461


>gi|33598261|ref|NP_885904.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella parapertussis
           12822]
 gi|33603172|ref|NP_890732.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella bronchiseptica
           RB50]
 gi|44888184|sp|Q7W4B5|MURC_BORPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|44888186|sp|Q7WFS3|MURC_BORBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33566819|emb|CAE39034.1| UDP-N-acetylmuramate--alanine ligase [Bordetella parapertussis]
 gi|33568803|emb|CAE34561.1| UDP-N-acetylmuramate--alanine ligase [Bordetella bronchiseptica
           RB50]
          Length = 468

 Score = 56.8 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 140/420 (33%), Gaps = 43/420 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      +       IPV         +  LA   RL+ 
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVV----PRAVM--LAELMRLKR 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L++       +      +      AR+    ++ + E
Sbjct: 107 G---IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLTSAGANARLGQG-EYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +  L     P +A++T I   H+  +    ++A  K+   E  ++       
Sbjct: 161 ADESDASFLNLL-----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSA 213

Query: 227 YDDSFFELLKAKSHALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +    ++     +             +    D Q    +        +  +   +++
Sbjct: 214 ILCADDANVREIMPFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTVQRRDRDVVLPALQ 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H  +N L  + + + L  D     +AL+ F     R  ++            
Sbjct: 274 VELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQWGDLPVPAAHGGG 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
             +   +       ++     +     +R  VL         ++    D   VL   +  
Sbjct: 334 TFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFEDFVRVLGSADGV 393

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G          AL  AL  +  V   + E +  L   I   + DGDVVVV  
Sbjct: 394 LLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDGDVVVVMG 453


>gi|313637023|gb|EFS02594.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria seeligeri
           FSL S4-171]
          Length = 455

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 93/299 (31%), Gaps = 39/299 (13%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +PHI+VIT I  AHL   +   E   AK  I +   +   + +N+D    + L  ++ A
Sbjct: 180 FKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQTEDDFLVINWDQEELKNLTKQTKA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    +         Q        +   +    +           G H  +N+L    
Sbjct: 240 QVIPFSTT---------QRLGQGSYVQNGNIMFYDEVIGARDSILLPGEHNLENVLAXXA 290

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +   L    +  +  L  F   E R    +  +        ++S   N  + ++A+    
Sbjct: 291 VAKTLGVANEEIMHVLETFKGVEHRT---QFVVEWQGRKFYNDSKATNILATQSALKGFK 347

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-R 420
                  G            G    +   +L       N+  + + G     +       
Sbjct: 348 NPVVLLAG------------GLDRGNSFDELLPFFK--NVKALIVFGETADKIGRVGKIA 393

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            I VHY + ++            GD++++    +S             F   I+ L+EE
Sbjct: 394 GIEVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAFMDAISELIEE 452


>gi|167759619|ref|ZP_02431746.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
 gi|167662745|gb|EDS06875.1| hypothetical protein CLOSCI_01977 [Clostridium scindens ATCC 35704]
          Length = 487

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 128/371 (34%), Gaps = 39/371 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+  L + +                     +  ++  G  EL ++
Sbjct: 142 IAISGTHGKTTTTSMLSHILLAGEMDPTISVGGILK--------AIGGNIKVGKSELFVT 193

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I+VI  I   HL  F  +++I S+  +  + L K GT+ +N +  
Sbjct: 194 EACEYTNSFLHFFPKISVILNIDEDHLDFFKDLDDIRSSFHKFAKLLPKDGTLIINGNID 253

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGI 288
             + +           I  +G   + D+           E S+  V+       +     
Sbjct: 254 KLDCITK----GLDCRIIKYGDDSSMDYSATNISHNKLGEASFDLVKAGVFVDRISLSVN 309

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +  +L   +D   K L  F     R             T+ID+  + 
Sbjct: 310 GDHNVSNALAAIAVSDLLGVSLDKMKKGLKEFTGTNRRF---EYKGEMDGVTIIDDYAHH 366

Query: 349 --------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                     A       +     PH   R  A+  +  E   L+ + H+ L+++ +   
Sbjct: 367 PTEINATLTAAKYYPHRELWCVFQPHTYTRTKALFHEFVE--ALAHADHVVLSDIYAARE 424

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              +   G     + DAL  +    +Y  + + +  F       GD +++      G   
Sbjct: 425 TDTL---GISSKDIADALKEKGCDAYYFSSFEDIQDFCVEKCQKGD-LLIT----MGAGD 476

Query: 460 LI---NLLLEE 467
           ++     LL+ 
Sbjct: 477 VVNIGEELLKR 487


>gi|303232747|ref|ZP_07319432.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
 gi|302481233|gb|EFL44308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Atopobium
           vaginae PB189-T1-4]
          Length = 506

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 110/368 (29%), Gaps = 37/368 (10%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++    R + +   + ITG+ GKTTT  +L   L               +IG+    A
Sbjct: 108 MGEVEFVWRTQPRL-WLGITGTNGKTTTTTLLNTMLHRAHI----PSRAVGNIGLSCCEA 162

Query: 155 RMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                D ++   EL    L E         P  A +  I P H+     +E  A+AK +I
Sbjct: 163 ACSRSDDEWFCAELSSFQLAETSNFH----PVAAALLNITPDHIEWHGSMEAYAAAKEQI 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F  L       ++ DD++   +  +  A G+  +        AD Q ++           
Sbjct: 219 FAQLTADNLAIISRDDAYCRAIYERLCARGVPVLCVS---TGADPQTQQAAYVENNIMHI 275

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                                N+   L   ++             V         R    
Sbjct: 276 RLHNRTYTLCDVRNTKLQGEHNIQNMLTASALALFAGADVQAITDVLLQFSTLEHRLEFV 335

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    +++S   N  + + A+ V         G+ + +LG   +  +L+   H  + 
Sbjct: 336 ARIGDVDFVNDSKATNTDAAQHALRVYD------AGKIVVLLGGHDKQTDLAALAHDVV- 388

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL------------PRSIHVHYSETMDGLFLFIQSSL 441
                   S     G     +  AL              +  + Y   +   F       
Sbjct: 389 -----RKCSVAVCYGQAGSRIAQALTYELSCANAEHPNTTCTIVYEPHLREAFDAAVLHA 443

Query: 442 VDGDVVVV 449
             GD V++
Sbjct: 444 KPGDCVLL 451


>gi|323340616|ref|ZP_08080868.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
 gi|323091739|gb|EFZ34359.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           ruminis ATCC 25644]
          Length = 456

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 31/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I  L    RPHIAV+T I  AH       E    AK  I +  ++ 
Sbjct: 163 DVMVTELSSFQLMGIEKL----RPHIAVLTNIYEAHTDYHGSRENYVKAKMRIVKNQKED 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D   +  L   + A              +     +     +   +  + +   
Sbjct: 219 DYFVVNWDSEEWRNLSKLTKAK---------IVPFSRQDTTEEGAYVKNGVIFFRGEEIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  I     +   + L  F     R    +         
Sbjct: 270 HVDEIKVPGSHNVENALAAISVAKIEGQSNENIAEVLRTFSGVRHRT---QYVTTFNGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S          G            G         L   L   +
Sbjct: 327 FYNDSKATNMEATEKALSGFENPVVLLCG------------GLDRGFTFERLVPYLKK-H 373

Query: 401 ISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     L++A  L     + +++              +GD+V++
Sbjct: 374 VKAMVVFGQTADLLEEAGKLAGIGRIKHAKDSSAAVSAAYEMSSEGDIVLL 424


>gi|293603445|ref|ZP_06685870.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
 gi|292818147|gb|EFF77203.1| UDP-N-acetylmuramate--L-alanine ligase [Achromobacter piechaudii
           ATCC 43553]
          Length = 468

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 131/407 (32%), Gaps = 36/407 (8%)

Query: 64  GAGLVVVNT----DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  +V +T    D    I + +  +  V   L  L +L    R       IA+ G+ GK
Sbjct: 64  GAAAIVTSTAVAGDNPEVIAARAARIPVVPRALM-LAELMRLKRG------IAVAGTHGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++   L++       +     +       AR+    D+ + E   S    +  L 
Sbjct: 117 TTTTSLVASVLAAGDLDPTFVIGGRLNS--AGANARLGQG-DYIVVEADESDASFLNLL- 172

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P +A++T I   H+  +    ++A  K+   E  ++          S    ++   
Sbjct: 173 ----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSAVLCSDDANVREIM 226

Query: 240 HALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +             + +  + Q    +                ++V  +  G H  +N
Sbjct: 227 PFVSRPITTYGLNEDAQVRAYEVQPSGTRMRFNVQRTHRDTLLPPLQVELNLPGLHNVRN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + + + L    D   ++L+ F     R  +               +   +      
Sbjct: 287 ALAAIAVATELGVSDDAIRESLAAFKGVGRRFTQTGEFPVPASHGGGTFTVIDDYGHHPV 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF--- 409
            ++     +      R  VL         ++    D   VL   +   ++ V+ +G    
Sbjct: 347 EMAATLSAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADAVLLTEVYAAGEPPL 406

Query: 410 ---HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
                 AL  AL  +  V   + E +  L   +   + DGDVV+V  
Sbjct: 407 VAADGRALSRALRVAGKVEPVFVEDVAELPQAVVDFVRDGDVVIVMG 453


>gi|254454584|ref|ZP_05068021.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
 gi|198268990|gb|EDY93260.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           238]
          Length = 471

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 128/405 (31%), Gaps = 42/405 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A      +V+ +     +    +    G+  V  A   LA   R++S    IA+ G+
Sbjct: 74  IEDAE----VIVISSAIKPGNPELDAARQRGLPVVRRA-EMLAELMRMKSN---IAVAGT 125

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  I           D ++ + E   S      
Sbjct: 126 HGKTTTTTMVAALLEE---GKFNPTVVNGGIIHAYGSNARVGDGEWMVVEADES-----D 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++  IE + +   +    +   G      DDS  + L 
Sbjct: 178 GTFNRLPATIAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLV 237

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K     + T     ++      L   K  +    +        ++      G H   N 
Sbjct: 238 GKITDRRVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEGLTIVDCALPMPGDHNVSNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L    +    AL+ F     R  R            I + Y  +P  + A 
Sbjct: 298 LSAIAVARYLGMKTEEIRTALTAFKGVGRRFTRVGEVDG----VTIIDDYGHHPTEITAV 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------ISHVWLSGFH 410
           +          EGR IAV              H   A+  + +N      I+ V+ +G  
Sbjct: 354 LKAA---RQASEGRIIAV-----HQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGED 405

Query: 411 V------LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           V        L   L R+ H           L   ++     GD+V
Sbjct: 406 VIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMV 450


>gi|319789935|ref|YP_004151568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
 gi|317114437|gb|ADU96927.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermovibrio
           ammonificans HB-1]
          Length = 413

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 118/377 (31%), Gaps = 51/377 (13%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
              S  + I++TG+ GK+TT  ++        K          + G+PL+   +    + 
Sbjct: 75  YRFSSGSFISVTGTNGKSTTTAVIYH----ALKLSGRESFIGGNYGIPLSTFALDT-TEE 129

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
               L +S        +   R  ++V   + P HL+ +S  EE   AK  +    + +  
Sbjct: 130 SFTALELSSFQIEDLTSFRSR--VSVFLNVTPDHLNRYSSFEEYREAKLRLL---DFSDC 184

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +N DD  F+ LK K         +S      AD ++           +  +       
Sbjct: 185 AVVNGDDPSFKHLKGKL----GIYTFSVSTDSGADARVEGELLVFSGYRIPYRELPLKGI 240

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                    +    ++ L           +  +    F   +G   R      +G    +
Sbjct: 241 HNLENYLAALVALAVVGL-----------SEEEIYEGFKAFKGLPHRCEVVGRKGGVVFV 289

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +MK A+     +     G    +  D  E+            + L    + 
Sbjct: 290 NDSKATNPDAMKKALESFRSVVLIAGGSDKGL--DFKEL------------KPLVKSRVK 335

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
            +   G     L +      +V  + +M+       +   D  VV++    +S       
Sbjct: 336 ALVAIGETAGKLVETFKEETYVLTASSMEEAVERAYALAGDEGVVLLSPGCASFDMFKNF 395

Query: 453 --NSCGFYRLINLLLEE 467
                 F   +  L EE
Sbjct: 396 QERGERFREAVKRLTEE 412


>gi|284802483|ref|YP_003414348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284995625|ref|YP_003417393.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
 gi|284058045|gb|ADB68986.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5578]
 gi|284061092|gb|ADB72031.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 08-5923]
          Length = 455

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 TDDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|33593953|ref|NP_881597.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis Tohama
           I]
 gi|44888182|sp|Q7VUQ4|MURC_BORPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33564027|emb|CAE43293.1| UDP-N-acetylmuramate--alanine ligase [Bordetella pertussis Tohama
           I]
 gi|332383371|gb|AEE68218.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS]
          Length = 468

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 74/420 (17%), Positives = 140/420 (33%), Gaps = 43/420 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD    A   GAG +V +T +      +       IPV         +  LA   RL+ 
Sbjct: 56  GHDRANVA---GAGAIVTSTAVAGDNPEVLAARAARIPVV----PRAVM--LAELMRLKR 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  ++   L++       +      +      AR+    ++ + E
Sbjct: 107 G---IAVAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLTSAGANARLGQG-EYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S    +  L     P +A++T I   H+  +    ++A  K+   E  ++       
Sbjct: 161 ADESDASFLNLL-----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSA 213

Query: 227 YDDSFFELLKAKSHALGIKTIYS----FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              +    ++     +             +    D Q    +        +  +   +++
Sbjct: 214 ILCADDANVREIMPFVSRPITTYGLSPDAQVCAQDVQADGTRMRFTVQRRDRDVVLPALQ 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V  +  G H  +N L  + + + L  D     +AL+ F     R  ++            
Sbjct: 274 VELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQWGDLPVPAAHGGG 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
             +   +       ++     +     +R  VL         ++    D   VL   +  
Sbjct: 334 IFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFEDFVRVLGSADGV 393

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
            ++ V+ +G          AL  AL  +  V   + E +  L   I   + DGDVVVV  
Sbjct: 394 LLTEVYAAGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDGDVVVVMG 453


>gi|226507610|ref|NP_001141424.1| hypothetical protein LOC100273534 [Zea mays]
 gi|194704536|gb|ACF86352.1| unknown [Zea mays]
          Length = 540

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 5   WTFHDLLQAIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
            T  +LL   +   +         + G+  D+  +A  + F  + G   DG   +  A +
Sbjct: 8   MTLAELLDESKLVPVAVTGDQDVALAGVQRDASLVAAGDLFVCV-GE--DGLAGLTEADK 64

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           +GA  VV + D+          +  VDD+L AL  L      R    +  I
Sbjct: 65  RGAVAVVADQDLNIEGTLACRALVIVDDILTALRVLPACLYSRPSMNMAII 115


>gi|158321669|ref|YP_001514176.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus oremlandii
           OhILAs]
 gi|189028969|sp|A8MK48|MURC_ALKOO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158141868|gb|ABW20180.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus oremlandii
           OhILAs]
          Length = 465

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 114/391 (29%), Gaps = 30/391 (7%)

Query: 66  GLVVVNTDMVA-SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +   +    +    +IP     D    L  +            IA++GS GKTTT  
Sbjct: 77  TAAIKEHNPERMAAKERNIPQI---DRAEMLGIIMKNY-----KKAIAVSGSHGKTTTTS 128

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ++++ +                  V   L  +  ++  G  E  ++   E         P
Sbjct: 129 LISLIMEYSNLDPTI--------MVGGELDEIGGNIKIGNSEHFITEACEYVESFLKFYP 180

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  I   HL  F  +  I  A  +    + + G +  N DD+  + +         
Sbjct: 181 FIGIILNIDEDHLDYFKDLNHIKEAFRKFINLIPQEGFLIANGDDANVQEIL----HSIE 236

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQS--WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + ++G   +  F  R     ++    +              +  G H   N L ++  
Sbjct: 237 CNLITYGLDSSNTFVARNISFTNDGYPIFTVDFKGESMGTFELNIPGKHNIYNALASIAT 296

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAI 357
             +L  +       +  F     R                       S     A      
Sbjct: 297 AYLLGVEPSEIQNHIKKFRGIHRRFDILGEVKGCKIVDDYAHHPVEISATLEAAKNYPHN 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +     PH   R  A+L D       + + HI + ++ +        +    +  +   
Sbjct: 357 KIWCVFQPHTFSRTKALLEDFSR--SFTNADHIIITDIYAAREQDTGEVHSEILANMIQK 414

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                 V Y +  + +  +I   +  GD+V+
Sbjct: 415 NNMHSQVRYMKDFEDIAAYIYDHMEPGDLVL 445


>gi|260775615|ref|ZP_05884512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608796|gb|EEX34961.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 456

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 112/364 (30%), Gaps = 27/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPQG 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           DS    +  +         +S  +        R  KQ ++ S   V  QG+   V     
Sbjct: 223 DSAIADVLQRGC-------WSETEFSGEQGDWRAEKQVADGSIFTVFFQGE--AVGTVKW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPDLACQSLAKFINTKRRLELKGEVNQITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +      +  G++  +         + +  H +     SL     V+L  
Sbjct: 334 -----PTAIELTVGGLRNKVGKQRILAVLEPRSATMKRGVHKETLA-ASLAQADVVFLYQ 387

Query: 409 FH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                  V  +     +S   + S+++D L   +      GD ++V  SN  GF  + + 
Sbjct: 388 PDNIEWSVEDIAQQCQQS--AYASDSVDALVQMVTEQAQPGDQILV-MSNG-GFEGIHDK 443

Query: 464 LLEE 467
           LL +
Sbjct: 444 LLAK 447


>gi|325144437|gb|EGC66737.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Neisseria meningitidis M01-240013]
          Length = 458

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 124/414 (29%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNLGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 126 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 185

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 186 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 246 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 298

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                +   + TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 299 AAARHVGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A  +SL     V+    G      +
Sbjct: 359 GGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWDVAE 406

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
              P    ++  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 407 ALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILV-MSNG-GFGGIHGKLLEALR 458


>gi|237747015|ref|ZP_04577495.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378366|gb|EEO28457.1| UDP-N-acetylmuramate-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 470

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 134/419 (31%), Gaps = 51/419 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++K A  +VV++ +             ++P+         +  LA   RL+ 
Sbjct: 56  GH--APENIEK-ADAIVVSSAIRDDNPEVLAARKKNVPIV----PRAVM--LAELMRLKR 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L+        +     +              DF + E
Sbjct: 107 G---IAIAGTHGKTTTTSLVASVLAEGGFDPTFVIGGRLNS---AGANAGLGAGDFIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P I VIT I   H+  +             F          + 
Sbjct: 161 ADES-----DASFLNLNPVIEVITNIDADHMDTYGHDFARLKQAFVEFTQRLPFYGRVML 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
             D           +  I    ++G  ++AD +    +            +G    E+  
Sbjct: 216 CIDDSNVREIKPFISKPIT---TYGFHEDADVRAIDARAEGTLMIFTALQKGHPPLEICL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQGFF 339
           +  G H  QN    + I   L  +     +A+  F     R  R       +    +   
Sbjct: 273 NQPGMHNVQNACAVIAIARELGIEDSAIQRAMEKFTGVNRRFTRLGKIRLPQKDGEKIAE 332

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             + + Y  +P+ M A ++      P+       VL         ++    D  +VLS  
Sbjct: 333 VELVDDYGHHPSEMAATLAAARGAYPNR----RLVLVFQPHRYTRTRDLFEDFVKVLSAT 388

Query: 400 NI---SHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
           ++     V+ +G   +   D   L R+I V       + E +  +   + + + DGDVV
Sbjct: 389 DVLLLGEVYPAGEQPIIAADGRTLARTIRVAGKVDPVFVEDIAEMPSAVLNVIEDGDVV 447


>gi|33151489|ref|NP_872842.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Haemophilus
           ducreyi 35000HP]
 gi|60390541|sp|Q7VP56|MURD_HAEDU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33147709|gb|AAP95231.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Haemophilus
           ducreyi 35000HP]
          Length = 435

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 110/348 (31%), Gaps = 41/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITGS GK+T   +++                  +IG+P     +    +
Sbjct: 101 FVREAKAPIIAITGSNGKSTVTTLVSEMAQQAGIKVGMG----GNIGIPALSL-LNKGYE 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  ++  H+  ++  E    AK  I+E      
Sbjct: 156 LFVLELSSFQL----ETTYSLKAKAATILNVSQDHMDRYASGEHYRQAKLRIYEN----- 206

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      E +           + S        F     +   +   +    Q    
Sbjct: 207 ----------AEYVIVNDDDPLTYPLPSQSVGNLRHFAEHDAQYAIKYDQLCSGDQAVIN 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +      +    I  L  +     R    +          
Sbjct: 257 TDQMLLTGRHNQLNALAAIALAEAAGINRTGIINGLRCYGGLAHRF---QRVPTNDGVCW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG   +  + S      L  +++  +I
Sbjct: 314 VNDSKATNVGSTVAALNGL-----PLSGTLYLLLGGDGKGADFSM-----LKALVNQPHI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G    +L +    + +    +TM      I+  +  GD+V++
Sbjct: 364 -VCYCFGKDGKSLAEL---TTNSVLVDTMQQAIEQIRPLVKQGDMVLL 407


>gi|307132585|ref|YP_003884601.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
 gi|306530114|gb|ADN00045.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Dickeya dadantii
           3937]
          Length = 437

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 133/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMAHAAGWAV----GVGGNIGVPALEL-LKQESQ 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 153 LYVLELSSFQL----ETTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V+ +   
Sbjct: 209 IVNADDALTMPVRGADARCLSFGV------------DVGDYHLNRQQGETWLRVKGERVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + AL +    
Sbjct: 257 NTREIKLVGQHNYTNALAALALADAVGIPRSSALIALTSFTGLPHRF---QLALARHDVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA+S L     H +G    +LG   +  + S      L   L    
Sbjct: 314 WVNDSKATNVGSTEAALSGL-----HVDGTLHLLLGGDGKSADFSP-----LLRYLQGDR 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    +ETM+     I S    GD+V++    +S     
Sbjct: 364 I-RLYCFGRDGGQLA-ALRPEI-AEQTETMEQAMRLIASRAQPGDMVLLSPACASLDQFR 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 SFEQRGDEFARLAEEL 436


>gi|262380536|ref|ZP_06073690.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
 gi|262297982|gb|EEY85897.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter radioresistens
           SH164]
          Length = 482

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 130/414 (31%), Gaps = 45/414 (10%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGA--LNKLAVAARLRSKA 108
           FI HA    KGA ++VV+T +      +   +     V  V  A  L +L          
Sbjct: 71  FIGHAADNIKGASVLVVSTAIDPENPEVKAAIEQRIPV--VRRAEMLGELMRYRHG---- 124

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  +LT  L+        +     +      +        + + E  
Sbjct: 125 --IAVAGTHGKTTTTSLLTCMLAEEGMDPTYVIGGLLNRT---GVNAALGASRYIVAEAD 179

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    +      + P  A++T I   H+  + G  ++       F        + +   
Sbjct: 180 ESDASFLH-----LEPMAAIVTNIDADHMDTYGGSFDVLKDTFIQFLHKLPFYGLAVVCG 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      + + ++G + + D +    +Q   +S   V  + +    +  + 
Sbjct: 235 DDAN---IREIMPRIARPLLTYGFNPDNDIRAVDVEQDGMRSHFTVLRKDREPLRLTINQ 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +G+ +          +AL  F     R +       +     + + Y 
Sbjct: 292 PGLHNVLNALAAIGVATDEGVSDAAIGRALEGFSGVGRRFQVQGEFGLEQGTVKLVDDYG 351

Query: 348 ANPASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +P  +               ++    PH   R      D  ++        +       
Sbjct: 352 HHPKEVEATIKAARQSHPDRRLVMMFQPHRFSRTRDCFDDFVDVLSQVDQLLLLEVYPAG 411

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVH--YSETMDG-LFLFIQSSLVDGDVVV 448
              I      G    +L  ++     V     + ++G L   IQ  L   D+++
Sbjct: 412 EKPI-----VGADSRSLARSIRLRGEVEPILIDPVEGNLQNVIQKVLQPNDLLL 460


>gi|316985037|gb|EFV63990.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           H44/76]
          Length = 465

 Score = 56.8 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 125/414 (30%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 86  VVEAILNLGLPYISGPQWLSENVL-------------HHHWVLGVAGTHGKTTTASMLAW 132

Query: 129 ALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD-----FGIFELGMSHLGEIRFL--TH 180
            L          IG    + GV   L + P         F + E                
Sbjct: 133 VLEYAGLAPGFLIGGVPENFGVSARLPQTPRQDPNSQSPFFVIEADEYDTAFFDKRSKFV 192

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  AV+  +   H   F+ +  I +    +   +   G I  N      +    K  
Sbjct: 193 HYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTVPSEGLIVCNGRQQSLQDTLDKGC 252

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++   +       +   +  +  ++ S+  +     +  V    +G H   N L  +
Sbjct: 253 WTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 305

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                +  D+ TA +AL  F   + R +    A        F     +       ++  +
Sbjct: 306 AAARHVGVDIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQRV 365

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLALK 415
                ++          LG M              A  +SL     V+    G      +
Sbjct: 366 GGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWDVAE 413

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
              P    ++  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 414 ALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILV-MSNG-GFGGIHGKLLEALR 465


>gi|39998162|ref|NP_954113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
 gi|62900554|sp|Q748D4|MURD_GEOSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39985108|gb|AAR36463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens PCA]
          Length = 452

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 27/289 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+    L  IR      RP +AV+  I   HL  ++  +E   AKA IF+    +
Sbjct: 158 DRVVVEISSFQLEWIR----SFRPTVAVLLNITEDHLDRYATYQEYIDAKARIFKNQTAS 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     L  ++ A              +  +            +  +  G+ 
Sbjct: 214 DWAVLNVDDPIVAGLAGRTCAAV---------FPMSRQRELGEGIFYRDGAIIFRHAGRQ 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                         N+   +  ++        A +AL+      G   R           
Sbjct: 265 ERFPTDRFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELVRELNGVR 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S++ A++  + I+                 G+     +  LA +++   
Sbjct: 325 YFEDSKATNVGSVEKALASFNDITLIAG-------------GKDKGGSYAPLAGLVAER- 370

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + H+ L G     +   L        + T++       S    G VV+ 
Sbjct: 371 VRHMILIGEAKDRMARELGHLTDTRMAVTLEDAVELAASLTQPGGVVLF 419


>gi|29840624|ref|NP_829730.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           caviae GPIC]
 gi|33301359|sp|Q821S1|MURD_CHLCV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|29834974|gb|AAP05608.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           caviae GPIC]
          Length = 419

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 112/410 (27%), Gaps = 78/410 (19%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  +V       IP+  V DV  A        R       I ITGS GKTTT   L   L
Sbjct: 72  SHSLVVEAKRRGIPI--VTDVQLAFQDP-EFHR----YPSIGITGSAGKTTTVLFLVHLL 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S             +IGVP+    +    + GI  + +S                A I 
Sbjct: 125 RS----MGMGAFAMGNIGVPI----LQAMREKGIRVVEISSFQLTEQEIETPVLSGAAIL 176

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I+  HL     ++  + A                                  I      
Sbjct: 177 NISENHLDYHQSLQNYSEA-------------------------------KRNITKCLQS 205

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +S      L   K   + +     +  K   +    +           L          
Sbjct: 206 VESLWVGEWLSPGKSYLDYTKEIASVLDKGSALKPLYLHDRSNYCAAYALANEISNVPLE 265

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  +   P             +   + I++S     +S++ A+  + +        
Sbjct: 266 AFLQALQTFEKPPHRI----EYLGEKDGVSYINDSKATTMSSVEKALIAVKE-------N 314

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I +LG     G    S    L  +L+   + H+   G     +  AL  S+ +  +  +
Sbjct: 315 VIVILG-----GRNKGSDFTSLIPILTQT-VKHIVAMGECRNEIAQALSGSLPLTQARDL 368

Query: 431 DGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI---NLLL 465
                  QS    GDV+++    +S             F +L+     L 
Sbjct: 369 QEAVSMAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFRQLVGDMEALR 418


>gi|85712535|ref|ZP_01043583.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
 gi|85693669|gb|EAQ31619.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Idiomarina baltica
           OS145]
          Length = 455

 Score = 56.8 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 75/448 (16%), Positives = 136/448 (30%), Gaps = 69/448 (15%)

Query: 32  IDSRSIAPQ--EAFFAIKGPHYDGHDFI-------LHAVQKGAGLVVVNTDMVASIGSLS 82
            DSR   P   +    + G      +++          +   A L+VV+  + A    + 
Sbjct: 45  FDSREHPPGLDDI-VDLVGT-----EYVTTGGWRLEDLLA--ADLIVVSPGLDARDADIQ 96

Query: 83  IP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
           +     V  V DV              ++  ++A+TGS GK+T   ++          + 
Sbjct: 97  MARDAGVPIVGDV--------EIFAQLNQRPVVAVTGSNGKSTVTTLVEQMGQYHGYRW- 147

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                  +IGVP  L  +  D D  + EL    L      T  ++ + A +  ++  HL 
Sbjct: 148 ---VAAGNIGVP-VLDALQQDADAYVLELSSFQL----ETTRSLKLNAAALLNVSADHLD 199

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
            +   +    AK  IF     +               + + H   I          +   
Sbjct: 200 RYDSEQSYFEAKLNIFNHASVSVLNR-----------QDQQHWPKIVPDSVVTVGVDESV 248

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 +      M       +        G H   N+   L +   L    D  I A++
Sbjct: 249 SDYGLVKDDAGIAMTRNGSILARADRFALAGTHNLVNIQAALALAETLGLSPDKGIAAIA 308

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R    +          +D+S   N  +     + ++ + P   GR I + G  
Sbjct: 309 DFTGLPHRC---QVVYEAQGVRWVDDSKATNIGAT---EAAINGLRPMINGRLILIAG-- 360

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
              G+   +    L  VLS   +  +   G     + + L +     Y E +       Q
Sbjct: 361 ---GDGKGAQFTQLLPVLSQ--VDVLLTIGRDGKKIAE-LRKGAR--YCEHLSDAVKTAQ 412

Query: 439 SSLVDGDVVVV---KSSNSCGFYRLINL 463
                 D VV+    +S    F   +  
Sbjct: 413 QIAEAEDWVVLSPACASL-DQFKNFVER 439


>gi|293402021|ref|ZP_06646160.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304413|gb|EFE45663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 438

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 118/427 (27%), Gaps = 66/427 (15%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII----------------A 112
           V        +         V +         V   ++ +  I+                A
Sbjct: 49  VYEKGHPDILKREDYAFI-VKNPGIKYTVPFVNYFVQHQVKIVTEVEIGYRYASHFHYGA 107

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITG+ GKTT   ML   L               +IG PL+      + +     L +S+ 
Sbjct: 108 ITGTNGKTTITTMLYEMLQRKGN-----AIVAGNIGFPLSALAYDFEEEEKYVALELSNF 162

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                      P ++V+  +AP HL     +E    +K  I+E  +K      N DD   
Sbjct: 163 --QLLGIETFAPEVSVVCNLAPDHLDYMPSVEAYYESKMRIYENCQKEDWFLRNVDDPTV 220

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                      I    +           +      +   + +       E     +G + 
Sbjct: 221 VAYAKNIPCTTIDFSLT----------RQDVDLYRKDGKVWLHDLMLFEESRFPIVGDYN 270

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N ++   +   L   +      +S F P E R         +      ++S   N  +
Sbjct: 271 LSNAMVAACMAYKLGVSLADIQATISSFQPVEHRL---EYIGEKDGVKFYNDSKATNTHA 327

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           + AA+S   +      G     +    ++ +                 +      G    
Sbjct: 328 VTAALSSFDKNILLLAGGHDKGI-SFLDLKQYDDR-------------VKCCIAFGETRE 373

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRL 460
             K       HV   ETM        +    GD++++    SS             F  +
Sbjct: 374 QFKPIF---THVETVETMQEALHTAIAKAQSGDIILLSPACSSYDQFPNYEVRGTLFKEM 430

Query: 461 INLLLEE 467
           +   LE+
Sbjct: 431 VRAYLEK 437


>gi|88858800|ref|ZP_01133441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
 gi|88819026|gb|EAR28840.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           tunicata D2]
          Length = 442

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 105/343 (30%), Gaps = 39/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +    L+         G+          L     ++D  + E
Sbjct: 110 DKPVVAVTGSNGKSTVVTLAARVLADAGYNVGLAGNIGI-----SPLDLFASEIDVFVLE 164

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  + P  A I  +   H+  ++G++E  +AK  I+   +       +
Sbjct: 165 LSSFQL----ETTTSLAPISATILNLCEDHMDRYAGMDEYYAAKQTIYRNAQWAVYNQAD 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E           K   SFG+S +              S+   Q Q         
Sbjct: 221 LLTYPHEA----------KATLSFGESGSDYHLEHDES----GSFFAYQQQTILPVSDLT 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  + ++     D      +   F     R    +           ++S 
Sbjct: 267 IVGKHNQLNALAVMALLKPFNIDSFVYSTSFKAFTGLAHRC---QFVAQIDGVNFYNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  ++I  L         R I ++G   +  + S   +           ++ +  
Sbjct: 324 ATNVGACISSIEGLY----SPNKRLILIVGGDGKGADFSPLQYY------FAAQVTELIC 373

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G    AL      S   H+  +M       +     GD V++
Sbjct: 374 LGRDGKALAALKAGS---HFVSSMAQAVACAKKLAASGDNVLL 413


>gi|325982970|ref|YP_004295372.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
 gi|325532489|gb|ADZ27210.1| UDP-N-acetylmuramate [Nitrosomonas sp. AL212]
          Length = 464

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 64/377 (16%), Positives = 111/377 (29%), Gaps = 39/377 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVD------- 161
           ++A+ G+ GKTTT  ML   L          IG    + G+   +  +  +         
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILDYAGLNPGFLIGGIPENFGLSARIGIIRSEHPQDSESNS 164

Query: 162 -----FGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                F + E                   P  A++  I   H   F  +  I        
Sbjct: 165 AEISPFFVIEADEYDTAFFDKRSKFVHYHPRTAILNNIEYDHADIFPDLSAIKRQFHHFV 224

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +   G I  N  D   + + A+     ++   +              +  +  +    
Sbjct: 225 RIIPNNGLIIANGKDENIKHVLAQGCWTPLEEFGT--------ETDWNAQLLANNAIDIY 276

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             Q     +    +G H   N L  L         V+T I ALS F   + R        
Sbjct: 277 FDQIHQGCLHWDLLGEHNRMNALAALIAARHAGVPVETGIAALSEFKSVKRRM---EKRG 333

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                T+ D+  +   A       + + +        +    +  +MG         L E
Sbjct: 334 TVNGVTVYDDFAHHPTAIQTTLNGLRTHVGQKRIIAVLEPRSNTMKMGVWKDYLAHSLQE 393

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                   HV+         K  L   +  V Y + ++ L   I +     D V++  SN
Sbjct: 394 ------ADHVFCFTRDSQWAKSTLRTLNNRVDYCDDLNQLIQNIVAITKPEDHVLI-MSN 446

Query: 454 SCGF----YRLINLLLE 466
             GF     +L++ L E
Sbjct: 447 G-GFGGIHDKLLSALQE 462


>gi|254899266|ref|ZP_05259190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes J0161]
 gi|254912594|ref|ZP_05262606.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
 gi|254936921|ref|ZP_05268618.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|258609521|gb|EEW22129.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes F6900]
 gi|293590586|gb|EFF98920.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes J2818]
          Length = 455

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 TDDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|109899822|ref|YP_663077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
 gi|109702103|gb|ABG42023.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           atlantica T6c]
          Length = 441

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 113/373 (30%), Gaps = 50/373 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+T   +      +  K          +IG+P     +  D D  + E
Sbjct: 102 NTPVLAVTGSNGKSTVATLAYEMCLAAGK----KALLGGNIGIPALEL-LEKDADIIVLE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T+ +RPH+A +  ++  HL     +     AK  I+     +      
Sbjct: 157 LSSFQL----ETTYTLRPHVACMLNLSDDHLDRHGDMLSYQRAKLRIYRDARFSVC---- 208

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +  A       +           R      + + + +  +         
Sbjct: 209 ----------NRDDAATWPMTINPDVMFGLSSSERGLSWNKDTAHILLDGKDFLDSHACM 258

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+     +  +   D+     A + F     R    +          I++S 
Sbjct: 259 LVGEHNMLNIQAATAMAMLAGIDLTAIKLAATSFAGLAHRC---QTVAVSHHVRWINDSK 315

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +    I+ +  +SP  +G+ I + G   +  + S               ++ +  
Sbjct: 316 ATNVGAT---IAAIDGLSPTCKGKLILIAGGDGKGADFSPLEER------FNVQVNELIT 366

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     L +    S   H   T+D       +       V++    +S           
Sbjct: 367 LGKDGPKLAELKANS---HQVATLDDAVQLAATLAEGDATVLLSPACASLDMFKNYQQRG 423

Query: 455 CGFYRLINLLLEE 467
             F + +N L+ +
Sbjct: 424 DLFVKAVNTLVAK 436


>gi|313617977|gb|EFR90137.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria innocua
           FSL S4-378]
          Length = 461

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 44/322 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L          +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 167 SDQYISMELSSFQLM----GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQT 222

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q  +     +   +    + 
Sbjct: 223 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLEQGSYVQNGNIMFDDEV 273

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 274 IGSRDSILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRT---QFVVEWQG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 331 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 377

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            N+  + + G     +        I VHY + ++            GD++++    +S  
Sbjct: 378 -NVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILLSPACASWD 436

Query: 453 -------NSCG-FYRLINLLLE 466
                          +  L+ E
Sbjct: 437 QYRTFEVRGNAYMDAISELIEE 458


>gi|148556850|ref|YP_001264432.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
 gi|148502040|gb|ABQ70294.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas
           wittichii RW1]
          Length = 495

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 70/420 (16%), Positives = 136/420 (32%), Gaps = 54/420 (12%)

Query: 66  GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSV 117
             VVV+         +     S  +PV    D+     +L   AR    A  ++ ITG+ 
Sbjct: 107 AGVVVSPGVPLNRHPIAGHAASFGVPVI--SDI-----ELFAQARASLPAHKVVGITGTN 159

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  ++   L +             +IG+P+            + EL    +     
Sbjct: 160 GKSTTTALIAHILETAGV----PTLMGGNIGLPILGRDPLPAGGVYVLELSSYQIDIT-- 213

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   +AV+T I P HL  + G    A++K  +F    K  ++    D+   E++ A
Sbjct: 214 --QSLDCDVAVLTNITPDHLDRYDGFAGYAASKLRLFTMQGKGISVIAGDDEPSVEIINA 271

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
             +        S+  ++  + +    +    +    +    +  E      G H AQN  
Sbjct: 272 LRNRPIHPASLSWATTEQGEQRPVISRVEMGRVMRVMSSSLQGQENWPALQGPHNAQNAA 331

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           + +    +L        + L  +     R    +    +     +++S   N  +   A+
Sbjct: 332 LAIETCRLLGLSYSQIDQGLRSYPGLPHRM---QRVAEKRGVLFVNDSKATNATATAPAL 388

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
               +I     G     L    ++ + +  F   +A           +  G         
Sbjct: 389 GAYPKIHWILGG-----LPKTDDLDDCAPWFGHVVAG----------YTIGQAGPMFARI 433

Query: 418 LPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           L      V  S T+D       ++   G+VV++    +S             F R +  L
Sbjct: 434 LREAGKPVTESGTLDQAVADAAAAARPGEVVMLSPACASFDQFSDYEARGDAFRRAVEGL 493


>gi|229830143|ref|ZP_04456212.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
 gi|229791441|gb|EEP27555.1| hypothetical protein GCWU000342_02250 [Shuttleworthia satelles DSM
           14600]
          Length = 458

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 125/382 (32%), Gaps = 43/382 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++            IAI G+ GKTT+  M+++ L    +                 
Sbjct: 101 QLLGQIMSHYPES-----IAIAGTHGKTTSTSMMSMLLLESDQKPTISVGGILDAIHSNV 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 + D  + E       E         P  +VI  I   HL  F  +++I  +   
Sbjct: 156 HVG---NSDRFVAEAC-----EYTNSFLEFYPKYSVILNIEAEHLDFFKDLDDIRRSFKR 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
             E     G + +N + + ++ L A   +     + ++G   + D+   +         S
Sbjct: 208 FAENTADKGLLVINGEINDWQSLVADVKSD----VQTYGFDDSCDWYPSQISYDHFGCAS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           ++    Q     +  H  G H   N L  L +   +    +   +  + FH  + R +  
Sbjct: 264 FIPHFRQQTLPLIRLHVPGRHNIGNALSVLAVAHRMGLSEEEIREGFAKFHGADRRFQY- 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEM 381
                +     + + Y  +P  ++A+++               PH   R  A L D  + 
Sbjct: 323 ---KGKFHGATVIDDYAHHPTEIRASLAAAKNYPHKRIVVVFQPHTYTRTKAFLEDFADA 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSS 440
              +    +         +I      G   L +K  L    +   Y  + + +  +++ +
Sbjct: 380 LSAADQVILADIYAAREQDI-----YGVSSLDIKKRLDAAGVDCLYFPSFEEIEDYLKKN 434

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
            +DGD +++      G   ++ 
Sbjct: 435 SIDGD-LLIT----MGAGNVVQ 451


>gi|187925441|ref|YP_001897083.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phytofirmans
           PsJN]
 gi|229486478|sp|B2SYX4|MURC_BURPP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187716635|gb|ACD17859.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia phytofirmans
           PsJN]
          Length = 467

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 145/416 (34%), Gaps = 49/416 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHG 287
           D        +      K I  +G + +A  +    K    +     ++     +++V + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGFAPDAQVRAVNVKAHDGKMHFTAMREDAAPIDIVLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLI 342
            G H  QN L  + I + L        +AL+ F+    R +RY                +
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSEGKASGAYTL 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  M A ++      P        VL         ++    D  +VLS  +  
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDAL 390

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            ++ V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 391 VLTEVYSAGESPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSAVVRDGDVV 446


>gi|255994795|ref|ZP_05427930.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
 gi|255993508|gb|EEU03597.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium saphenum ATCC
           49989]
          Length = 464

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 68/394 (17%), Positives = 123/394 (31%), Gaps = 39/394 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             +  +   +    SL I +         AL  L          T IAI+G+ GKTTT  
Sbjct: 75  AAIADDNPELLKAKSLGIKLL----TRAEALGMLMSEY-----NTSIAISGTHGKTTTTS 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+++ L++ KK    +   N                ++ + E       E       +RP
Sbjct: 126 MVSLILNNAKKDPTILVGGNLSDINGNLKIG---KSEYFVTEAC-----EYMDSFLNLRP 177

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            + +I  I   HL  F  IE IA +     E + K G +     + F +          +
Sbjct: 178 KVELILNIDSDHLDYFDDIEHIAKSFRAFAELVPKDGLVIGYDANPFVKAALK-----NV 232

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + +FG S+ +D+     +   +   S+     +     V     G H  QN L     
Sbjct: 233 SNVVTFGFSRGSDYVAEDIEFDHQGLPSFKICNGENVVANVKLKIPGEHNIQNALAAAAC 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM------KAA 356
              L  D       L+ F     R                   +     +          
Sbjct: 293 THTLGVDGSDIENTLNEFSGINRRFDIVGMIGGSVKLVDDYAHHPTEIEATLDAAKKMKH 352

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             +     PH   R  A+  D       +    ++        NI+ +        ++ +
Sbjct: 353 NRLWCLFQPHTYTRTKALFSDFAPALSKADIIVMNEIYAAREININKL-----SAKSIVE 407

Query: 417 ALPR---SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + +      V++ E M+ +  F+  +L   D+V
Sbjct: 408 DIKKRFPEKEVYFFEDMEDMAGFVYENLKINDLV 441


>gi|153830363|ref|ZP_01983030.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
 gi|148874170|gb|EDL72305.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 623-39]
          Length = 403

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 64/400 (16%), Positives = 134/400 (33%), Gaps = 44/400 (11%)

Query: 68  VVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VVV+T +      +       IP+     V  A   LA   R R     IA+ G+ GKTT
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPI-----VRRA-EMLAELMRFRHG---IAVAGTHGKTT 52

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++T   S        +                  +   G   + ++   E       
Sbjct: 53  TTALVTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLH 104

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P + ++T I   H+  +    E +     +    L   G   L  DD     L  +  
Sbjct: 105 LQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRV- 163

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + + ++G S++AD ++  ++Q   +  +  V+    ++++  +  G H A N    
Sbjct: 164 ---SRQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAA 220

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +      +  ++A++       R              ++ + Y  +P  +   I  
Sbjct: 221 IAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKA 280

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------H 410
                         V+         ++  + D A VL   ++     V+ +G        
Sbjct: 281 ARNGWAEK----RLVMIFQPHRYTRTRDLYDDFANVLEQVDVLLMLDVYAAGEKPIAGAD 336

Query: 411 VLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +L   +     +   +      L   + + L DGD+V+
Sbjct: 337 GRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVL 376


>gi|16801208|ref|NP_471476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           innocua Clip11262]
 gi|30316097|sp|Q929Y1|MURD_LISIN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16414656|emb|CAC97372.1| murD [Listeria innocua Clip11262]
          Length = 455

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 44/322 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L          +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLM----GVQTFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQQNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q  +     +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLEQGSYVQNGNIMFDDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGSRDSILLPGEHNLENILASVAVAKTLGVTNEEIMYVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            N+  + + G     +        I VHY + ++            GD++++    +S  
Sbjct: 372 -NVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILLSPACASWD 430

Query: 453 -------NSCG-FYRLINLLLE 466
                          +  L+ E
Sbjct: 431 QYRTFEVRGNAYMDAISELIEE 452


>gi|303327347|ref|ZP_07357788.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
 gi|302862287|gb|EFL85220.1| UDP-N-acetylmuramate--alanine ligase [Desulfovibrio sp. 3_1_syn3]
          Length = 457

 Score = 56.4 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 114/359 (31%), Gaps = 28/359 (7%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   RLR     IAI G+ GKTTT  +      +       I     ++          
Sbjct: 98  LAELMRLRQG---IAIAGTHGKTTTTSLTASIFDTAGLDPTVIIGGRLNV---YGTNAHL 151

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D+ I E   S           + P I V+T +   HL ++   E I +A  +    +
Sbjct: 152 GHGDYLIAEADES-----DGSFLCLLPIINVVTNVDEDHLDHYKSREAIDAAFVQFMNNV 206

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   +  DD     L  +     +    ++G + +   +    +      +   +  
Sbjct: 207 PFYGINVVCGDDPGVRALLPRVKRPVL----TYGFAADNHLRAVPLESGLRSRFEVWRED 262

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY------R 331
            K  EV     G H   N L  +G         +   + L  F     R +         
Sbjct: 263 EKLGEVSLPQPGRHNILNALAAIGAAMEADIAFERCARGLGGFGGVGRRFEFKGEKDGVT 322

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              + G       +  A    +     +++   PH   R  A  G+ C++ +      + 
Sbjct: 323 VVDDYGHHPAEIAATLATARQVFPGRRIVAAFQPHRFSRTQAHFGEFCKVFDQVDEVLLT 382

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                S   I      G    +L   + +  +  V Y +T+D L   +   L  GDV++
Sbjct: 383 EIYAASEKPI-----PGVSGQSLAQGVQQVSTTPVRYFQTLDALAQALPEVLRPGDVLL 436


>gi|326333495|ref|ZP_08199736.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
 gi|325948695|gb|EGD40794.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Nocardioidaceae
           bacterium Broad-1]
          Length = 488

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 118/364 (32%), Gaps = 34/364 (9%)

Query: 97  KLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R    A   +A+TG+ GKTTT +ML   L +             ++G+P+  A 
Sbjct: 120 ELAWRLRDPDNAAPWLAVTGTNGKTTTVQMLDNILRTAGLR----SVAVGNVGLPIVEAV 175

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           M  +  D    EL    L     +        AV+  IA  HL  +  +EE A+ K  ++
Sbjct: 176 MDPEPYDVFAVELSSFQLHYTSSMAA----EAAVVLNIAEDHLDWYPSMEEYAADKGRVY 231

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           EG+E+     +  + +   + +A          ++ G        + +     +++++E 
Sbjct: 232 EGVERACVYNVADEATMHLVEEADVVEGARAIGFTLGTPAVGQVGVVEDILV-DRAFIEE 290

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +    +       +       +   L   ++  A   +              G R     
Sbjct: 291 RQTSAAELCQISDLASSAPHYVQNALAAAALARAHGVSQAAVRDGLKSFRPDGHRIEVVA 350

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G  T +D+S   NP + +A++     +     G            G         + E
Sbjct: 351 EVGGVTWVDDSKATNPHAAQASLQAYDPVIWIAGG---------LAKGARFDDLVASIHE 401

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMD------GLFLFIQSSLVDGD 445
            L       V L G     +  AL        +   +  D             +    GD
Sbjct: 402 RLRA-----VILIGQDRDVIASALAAHAGDLEIVELDDPDGEAALAEAVEIAAALAKPGD 456

Query: 446 VVVV 449
            V++
Sbjct: 457 TVLL 460


>gi|152989249|ref|YP_001350319.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|189029019|sp|A6VB84|MURC_PSEA7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150964407|gb|ABR86432.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 480

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 141/425 (33%), Gaps = 53/425 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALN 96
            F   +  + DG D           LVV +        VAS     IPV         + 
Sbjct: 63  IFIGHQAENADGAD----------VLVVSSAINRANPEVASALERRIPVV----PRAEM- 107

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA   R R     IA+ G+ GKTTT  ++    ++       +     +          
Sbjct: 108 -LAELMRYRHG---IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQ 160

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + + E   S    +      ++P +AV+T I   H++ +     ++     E   
Sbjct: 161 LGASRYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLH 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     +  +     +    ++G S++AD +    +Q   ++W  V 
Sbjct: 216 NLPFYGLAVMCVDDPVVREILPQIARPTV----TYGLSEDADVRAINIRQEGMRTWFTVL 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +    V   +         +  + I +      +  ++ LS F     R + Y    
Sbjct: 272 RPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQ 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   ++ + Y  +P  + A I  +    P        V+         ++  + D  +
Sbjct: 332 VEGGSVMLVDDYGHHPREVAAVIKAIRGGWPER----RLVMVYQPHRYTRTRDLYEDFVQ 387

Query: 395 VLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L  
Sbjct: 388 VLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRA 447

Query: 444 GDVVV 448
           GD+++
Sbjct: 448 GDILL 452


>gi|153006720|ref|YP_001381045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030293|gb|ABS28061.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 461

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/383 (16%), Positives = 115/383 (30%), Gaps = 41/383 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+AITG+ GK+TT  +     +              ++G PL    +
Sbjct: 102 ELAARFLA--GVPIVAITGTNGKSTTTALAGALFA-----RHRRTFTGGNLGTPLCQHVL 154

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                +  + EL              +RP +A I  + P HL  +  +++ A+AKA +F 
Sbjct: 155 DGGGAEVVVAELSSFQ----MEGLLSLRPRVAAILNVTPDHLDRYRDVDDYAAAKARLFG 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +       N  D     +   S A     +++FG             +  E    E+ 
Sbjct: 211 LQQPGDHAVANARDPRALAMAEASRA----VLHTFGFGPPGPGARDPGLEPDEGGATELW 266

Query: 276 LQGK---SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +Q +                  N    +  V           +  +      G   R   
Sbjct: 267 VQARGGGPERFRLANRALRGRHNRENAMAAVLCARLLGVPGGEVQAGLDAFGGLPHRLEV 326

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +G    +++S   N  S    +S      P G  R + V+G   +    +       
Sbjct: 327 VGERGGIEWVNDSKATNVDSTLVGLSAF----PAGTARVVLVMGGRGKGAPYAP------ 376

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--- 449
              L    +  +   G    A++  L          T++       + +  GD V++   
Sbjct: 377 LRPLFAGRVKALLTIGEDAPAVERELGDLCPTEACVTLEAAVRRAAALVRPGDAVLLSPA 436

Query: 450 KSS---------NSCGFYRLINL 463
            +S             F R +  
Sbjct: 437 CASYDQFRNYEERGEAFRRHVAE 459


>gi|6523805|gb|AAF14862.1|AF110740_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
 gi|12060818|gb|AAG48251.1|AF306766_1 UDP-N-acetylmuramate:L-alanine ligase MurC [Pseudomonas aeruginosa]
          Length = 487

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 141/425 (33%), Gaps = 53/425 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALN 96
            F   +  + DG D           LVV +        VAS     IPV         + 
Sbjct: 70  IFIGHQAENADGAD----------VLVVSSAINRANPEVASALERRIPVV----PRAEM- 114

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA   R R     IA+ G+ GKTTT  ++    ++       +     +          
Sbjct: 115 -LAELMRYRHG---IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQ 167

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + + E   S    +      ++P +AV+T I   H++ +     ++     E   
Sbjct: 168 LGASRYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLH 222

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     +  +     +    ++G S++AD +    +Q   ++W  V 
Sbjct: 223 NLPFYGLAVMCVDDPVVREILPQIARPTV----TYGLSEDADVRAINIRQEGMRTWFTVL 278

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +    V   +         +  + I +      +  ++ LS F     R + Y    
Sbjct: 279 RPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQ 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   ++ + Y  +P  + A I  +    P        V+         ++  + D  +
Sbjct: 339 VEGGSVMLVDDYGHHPREVAAVIKAIRGGWPER----RLVMVYQPHRYTRTRDLYEDFVQ 394

Query: 395 VLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L  
Sbjct: 395 VLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRA 454

Query: 444 GDVVV 448
           GD+++
Sbjct: 455 GDILL 459


>gi|15599607|ref|NP_253101.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAO1]
 gi|116052445|ref|YP_792757.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893502|ref|YP_002442371.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|254244778|ref|ZP_04938100.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|313106941|ref|ZP_07793144.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|23821886|sp|Q9HW02|MURC_PSEAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122257549|sp|Q02H29|MURC_PSEAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711872|sp|B7UZI9|MURC_PSEA8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9950643|gb|AAG07799.1|AE004856_10 UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|115587666|gb|ABJ13681.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126198156|gb|EAZ62219.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|218773730|emb|CAW29544.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas aeruginosa
           LESB58]
 gi|310879646|gb|EFQ38240.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 480

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 141/425 (33%), Gaps = 53/425 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALN 96
            F   +  + DG D           LVV +        VAS     IPV         + 
Sbjct: 63  IFIGHQAENADGAD----------VLVVSSAINRANPEVASALERRIPVV----PRAEM- 107

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA   R R     IA+ G+ GKTTT  ++    ++       +     +          
Sbjct: 108 -LAELMRYRHG---IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQ 160

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + + E   S    +      ++P +AV+T I   H++ +     ++     E   
Sbjct: 161 LGASRYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLH 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     +  +     +    ++G S++AD +    +Q   ++W  V 
Sbjct: 216 NLPFYGLAVMCVDDPVVREILPQIARPTV----TYGLSEDADVRAINIRQEGMRTWFTVL 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +    V   +         +  + I +      +  ++ LS F     R + Y    
Sbjct: 272 RPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQ 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   ++ + Y  +P  + A I  +    P        V+         ++  + D  +
Sbjct: 332 VEGGSVMLVDDYGHHPREVAAVIKAIRGGWPER----RLVMVYQPHRYTRTRDLYEDFVQ 387

Query: 395 VLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L  
Sbjct: 388 VLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRA 447

Query: 444 GDVVV 448
           GD+++
Sbjct: 448 GDILL 452


>gi|107100004|ref|ZP_01363922.1| hypothetical protein PaerPA_01001025 [Pseudomonas aeruginosa PACS2]
 gi|296391120|ref|ZP_06880595.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas aeruginosa
           PAb1]
          Length = 469

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 141/425 (33%), Gaps = 53/425 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALN 96
            F   +  + DG D           LVV +        VAS     IPV         + 
Sbjct: 52  IFIGHQAENADGAD----------VLVVSSAINRANPEVASALERRIPVV----PRAEM- 96

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA   R R     IA+ G+ GKTTT  ++    ++       +     +          
Sbjct: 97  -LAELMRYRHG---IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQ 149

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + + E   S    +      ++P +AV+T I   H++ +     ++     E   
Sbjct: 150 LGASRYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLH 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     +  +     +    ++G S++AD +    +Q   ++W  V 
Sbjct: 205 NLPFYGLAVMCVDDPVVREILPQIARPTV----TYGLSEDADVRAINIRQEGMRTWFTVL 260

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +    V   +         +  + I +      +  ++ LS F     R + Y    
Sbjct: 261 RPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQ 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   ++ + Y  +P  + A I  +    P        V+         ++  + D  +
Sbjct: 321 VEGGSVMLVDDYGHHPREVAAVIKAIRGGWPER----RLVMVYQPHRYTRTRDLYEDFVQ 376

Query: 395 VLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L  
Sbjct: 377 VLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRA 436

Query: 444 GDVVV 448
           GD+++
Sbjct: 437 GDILL 441


>gi|323489497|ref|ZP_08094724.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
 gi|323396628|gb|EGA89447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Planococcus
           donghaensis MPA1U2]
          Length = 454

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 104/346 (30%), Gaps = 35/346 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A  I ITGS GKTTT  +L   L+             N   V   +A      +  + 
Sbjct: 110 SEAPFIGITGSNGKTTTTTLLFHMLNQ---DNKNPLIAGNIGTVASGVAEKAKPENVIVT 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L          RP IA+IT I  AHL     IE+  ++K ++            
Sbjct: 167 ELSSFQLKGTE----AFRPTIAIITNIYEAHLDYHGSIEDYRASKMKLTSNQTAEDYFIY 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D            A                    +    ++++++  Q +        
Sbjct: 223 NADQPLLVEHAKNCKAK---------LVPFTLKGRTEESVSADENYVYWQGEELIERSKI 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N+L       I     +T I+ L+ F   + R    +           ++S
Sbjct: 274 MLAGQHNLENILAATAATLIQGGTKETIIRVLTSFTGVKHRS---QFIKEWQGRKFYNDS 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + K+A+    +      G            G        ++   +    +  + 
Sbjct: 331 KATNALATKSALEAFPENIILLAG------------GLERNHSLDEIRPFMDRVKV--LV 376

Query: 406 LSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G            S    +  +  MD        +  DGD +++
Sbjct: 377 TFGETAQRFTTFAEESGVKTIIQAGKMDDAVEKAIQASADGDTILL 422


>gi|153835403|ref|ZP_01988070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
 gi|148868059|gb|EDL67234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio harveyi
           HY01]
          Length = 437

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 127/374 (33%), Gaps = 56/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T         +IGVP     +    D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGLTV----GVGGNIGVPALDL-LEQGADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E        
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAEL------- 210

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +          +   +  +D Q    +    ++W+    Q         
Sbjct: 211 -------AVVNRDDQETFPDTETPLVTFGSDEQAYGLEADGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        +TM+ +   I S L  GD+V++    +S           
Sbjct: 370 FGADGDEF---MPLHESATRFDTMEDVIQQISSQLKTGDMVMLSPACASFDQFDNFMARG 426

Query: 455 CGFYRLINLLLEEF 468
             F      L E++
Sbjct: 427 DAF----AALAEKY 436


>gi|312885132|ref|ZP_07744816.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367205|gb|EFP94773.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 441

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 137/370 (37%), Gaps = 51/370 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  +    ALS+         +   +IGVP     +    D  + E
Sbjct: 109 DKPVIAITGSNGKSTVTDWTGQALSAAGLDV----AVGGNIGVPALDL-LQHQADIYVLE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++  +AV   ++  H+  +  +++  +AK  IF+  +        
Sbjct: 164 LSSFQL----ETTSSLKSKVAVFLNLSEDHMDRYRSMDDYRNAKLRIFDNAD-------- 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                  ++ A   A       S+ +               +  +  +Q +         
Sbjct: 212 -----VRIVNADDIATYPLKDSSYLEFSLDKKTDFAVTTQDDVEFFTLQGKKVLSTSEIS 266

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N+   L ++++L +      +AL V     G   R +  L+ G    +++S 
Sbjct: 267 LVGRH---NVSNCLVVLALLHSVGVDIERALPVIKSYSGLTHRCQVVLDNGGIKWVNDSK 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS KAA++ L       EG+   ++G + +  + S     +LA +L   N+  +  
Sbjct: 324 ATNLASTKAALTGLRM-----EGKLFLLVGGVSKGADFS-----ELAPILKNLNV-QLCC 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G    A     P +      E+++ +  +I   +  GDVV++    +S           
Sbjct: 373 FGQDGDAFMSLHPSAKR---FESINEIIHWISGQMKRGDVVMLSPACASFDQFKNFMARG 429

Query: 455 CGFYRLINLL 464
             F  L   L
Sbjct: 430 DEFTELARSL 439


>gi|221134088|ref|ZP_03560393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Glaciecola sp. HTCC2999]
          Length = 453

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/421 (16%), Positives = 138/421 (32%), Gaps = 46/421 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  ++   S P + +D++L                 ++A+ G+
Sbjct: 67  IGNAMSRGNPA--VEYVLDRNLPYTSGPQWLLDNLLK-------------DRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  +L      ++      G     +     ++    + +F + E     S   +
Sbjct: 112 HGKTSTSSVLA---WILEFAGYTPGFLIGGVPENFGVSARIGEGNFFVIEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      RP   V+  +   H   F  +  I      +   +   G I     D+  + 
Sbjct: 169 KRSKFVHYRPRTLVLNNLEFDHADIFDDLNAIKKQFHHLVRSVPANGLILSEKHDNNMQD 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +            ++  +  + D+  +K +      +          EV    IG H   
Sbjct: 229 VLE-------MGCWTTQEFISKDWTAQKTQAD-GGRFEVYYQGQLQGEVNWSLIGDHNVH 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N LM +     +    D AI++LS F   + R             T+ D+  +   A   
Sbjct: 281 NGLMAIAAAHNVGVTTDIAIESLSEFVNVKRRM---EIKGTVANITVYDDFAHHPTAIKT 337

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
               + + +        +    +  ++G          A+         V++     L+ 
Sbjct: 338 TVEGLKANVGVQRILAILEPRSNTMKLGIHKDQLTESWAQ------ADEVYIFEPASLSW 391

Query: 414 -LKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
            + +    S+  VH  + +D L   +       D ++V  SN  GF     +L+N L   
Sbjct: 392 SIDEVARDSVAPVHPYQDVDKLVEAVVKEAQPSDHILV-MSNG-GFAGIHDKLLNALSAR 449

Query: 468 F 468
           F
Sbjct: 450 F 450


>gi|114763027|ref|ZP_01442457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pelagibaca
           bermudensis HTCC2601]
 gi|114544351|gb|EAU47359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius sp.
           HTCC2601]
          Length = 467

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 113/382 (29%), Gaps = 34/382 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL 130
            ++A+     +PV   +D+          A         ++A+TGS GK+TT  ++   L
Sbjct: 85  PVIAAAWEAGVPV--DNDIGLFFRSFGSGAWEMFDQPPKVVAVTGSNGKSTTSALIHHIL 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S  +          +IG  +     P +    + EL        R LT    P +AV T
Sbjct: 143 QSAGR----GSQLAGNIGRGVLDIEPPEEGGVVVLELSSYQTDLARALT----PDVAVFT 194

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++P HL    G+    +AK  +F        +    +     L    +       +   
Sbjct: 195 NLSPDHLDRHGGLGGYFAAKRRLFAEGGPDRCVIGVDEAEGRYLANQLAEGAVDDRLIRV 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++                    + +  +   +    G   A N        +   A  
Sbjct: 255 SAARKLSGPGWDVFARKGFLTEWRKGRQVASIDLRQVRGLPGAHNHQNACAAYAAARALG 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                  + FH  EG   R +   + G    +++S   N  +   A+    +I     G 
Sbjct: 315 VAPRVIEAAFHSFEGLPHRSQIVADAGGVVYVNDSKATNVDAALKALQAFPRIRWICGGL 374

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---WLSGFHVLALKDALPRSIHVHYS 427
                  M E G  + +               HV   ++ G         L   +     
Sbjct: 375 -------MKEGGLEALAP-----------GFDHVAKAYVIGREAAGFALGLA-GVEAEVC 415

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
             MD       +    G+ V++
Sbjct: 416 TDMDTAVARAMADAEPGETVLL 437


>gi|293392858|ref|ZP_06637176.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
 gi|291424717|gb|EFE97928.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia odorifera DSM
           4582]
          Length = 491

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 135/411 (32%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + +    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAIPSDNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+       E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S +AD ++  + Q   +  +   +     M V  +  G H A N 
Sbjct: 242 RV----GRHVTTYGFSDDADVRIESYSQRGPQGHFTLSRQDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIDDDDILRALAGFQGTGRRFDFLGEYPLTPVNGKAGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L + D+V+V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRNRGKLDPILVSDADTVPETLAQLLQNDDLVLVQG 464


>gi|262189738|ref|ZP_06048096.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034382|gb|EEY52764.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 403

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 133/402 (33%), Gaps = 48/402 (11%)

Query: 68  VVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VVV+T +      +       IP+     V  A   LA   R R     IA+ G+ GKTT
Sbjct: 2   VVVSTAINEQNPEIQAAREKRIPI-----VRRA-EMLAELMRFRHG---IAVAGTHGKTT 52

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++T   S        +                  +   G   + ++   E       
Sbjct: 53  TTALVTQIYSEAGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLH 104

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P + ++T I   H+  +    E +     +    L   G   L  DD     L  +  
Sbjct: 105 LQPMVTIVTNIEADHMDTYGGDFENLKQTFIDFLHNLPFYGQAILCIDDPVIRELIPRV- 163

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + + ++G S++AD ++  ++Q   +  +  V+    ++++  +  G H A N    
Sbjct: 164 ---SRQVITYGFSEDADVRIENYRQNGQQGQFTVVRKGKANLDITLNIPGRHNALNAAAA 220

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + + +      +  ++A++       R              ++ + Y  +P  +   I  
Sbjct: 221 IAVATEDDIRDEAILRAMANTQGTGRRFDHLGEFETGNGVAMLVDDYGHHPTEVDVTIKA 280

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSG 408
                         V+         ++  + D A VL    +  +            ++G
Sbjct: 281 ARNGWAEK----RLVMIFQPHRYTRTRDLYDDFANVLEQ--VDVLIMLDVYAAGEKPIAG 334

Query: 409 FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
               +L   +     +   +      L   + + L DGD+V+
Sbjct: 335 ADGRSLCRTIRSRGKIDPIFVPDSQTLPSVLANILQDGDLVL 376


>gi|189029207|sp|A8LS63|MURC_DINSH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 464

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 127/411 (30%), Gaps = 45/411 (10%)

Query: 56  FILHAVQKGA---GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           FI    +  A    +V+ +     +    +    G+  V  A   LA   RL+S    IA
Sbjct: 60  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRA-EMLAELMRLKSN---IA 115

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  M+      + +        N  I             ++ + E   S  
Sbjct: 116 IAGTHGKTTTTTMVATL---LDRGGIDPTVINGGIIHAYDSNARAGAGEWMVVEADES-- 170

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                  + +   IAV+T I P H+ ++   E +     E    +   G      D    
Sbjct: 171 ---DGTFNRLPATIAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCTDHPEV 227

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIG 289
           + L  +        + +FG +  AD +       S  +  +                  G
Sbjct: 228 QALVGRITDR---RVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCTLPMPG 284

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +   L    D    AL+ F     R  +            I + Y  +
Sbjct: 285 DHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVAELGG----VTIIDDYGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAV-----LGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           P  + A +          EGR IAV        +  + E   +   +      +  IS +
Sbjct: 341 PVEIAAVLKAA---RQASEGRVIAVHQPHRFSRLASLFEDFCTCFNE----ADVVGISDI 393

Query: 405 WLSGFHV------LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
           + +G           L   L    H H       D L   I++    GD+V
Sbjct: 394 FAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIV 444


>gi|94312058|ref|YP_585268.1| UDP-N-acetylmuramate--L-alanine ligase [Cupriavidus metallidurans
           CH34]
 gi|166224718|sp|Q1LIM7|MURC_RALME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|93355910|gb|ABF09999.1| UDP-N-acetylmuramate:L-alanine ligase [Cupriavidus metallidurans
           CH34]
          Length = 471

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 139/420 (33%), Gaps = 42/420 (10%)

Query: 48  GPHY-DGHDFILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GHD      +   GA  VVV+T +      +       IPV         +  L
Sbjct: 50  GARVAHGHD-----AENVTGANAVVVSTAVTNDNPEVLAARARRIPVV----PRAVM--L 98

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A   RL+     +AI G+ GKTTT  ++   L+        +     +       AR+  
Sbjct: 99  AELMRLKQG---VAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGT 153

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGL 217
             DF + E   S           + P + VIT I   H+  +            E  + L
Sbjct: 154 G-DFIVAEADES-----DASFLNLFPVMEVITNIDADHMDTYGHDFARLKQAFVEFTQRL 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQL 276
              G   L  DD     +        ++  ++   + +  + +    +            
Sbjct: 208 PFYGIAVLCVDDPNVREILPFVSKPVVRYGFAEDAQIRAVNARAVDGQMHFTVLRQLNGH 267

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               +++V +  G H  QN L  + I + L     + +KAL  FH    R +RY      
Sbjct: 268 AEPPLDIVLNLPGIHNVQNALAAIAIATELEVPDASIVKALREFHGVGRRFQRYGEVATP 327

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEV 395
                     +     ++ A ++ +      + R +                  + +   
Sbjct: 328 DGSGTFTLVDDYGHHPVEMAATLAAARGAFPDRRLVLAFQPHRFTRTRDCFEDFVKVLGT 387

Query: 396 LSLYNISHVWLSGFHVLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
           +    ++ V+ +G   +   D  AL R++ V       + E ++ +   I +++  GDVV
Sbjct: 388 VDALLLAEVYAAGESPIVAADGRALTRALRVANKVEPVFVEQIEDMPQAILNAVRPGDVV 447


>gi|225552147|ref|ZP_03773087.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
 gi|225371145|gb|EEH00575.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia sp. SV1]
          Length = 451

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/452 (13%), Positives = 123/452 (27%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTD-----------------------MVASIGSLSIPVFGVDDV------ 91
           +++GA LV+ +                             +         V +       
Sbjct: 30  LKRGAKLVITDLKSETELALSIDALRDFEDQIRYVLGKHDVNDFKNADIVVKNPSVKPNN 89

Query: 92  --LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
             L    ++        + +K  IIA+TG+ GK+T   +L  AL          G+    
Sbjct: 90  KYLKFAKRVETDISLFLMFNKNPIIAVTGTKGKSTLVSLLYQALKEKYPGVKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P I++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGKSPLILELSS----WQLQSLENFNPIISIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFL-NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I        +F   K+K        +  F +    DF   +   
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDQAYYKYFSKFKSKV------RVILFSEFNPCDF--DQDIF 254

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              +  +               +              ++I        +           
Sbjct: 255 YCNEGKVYFNDNLIGSFSNSRAVFIIPKVITFFVSYYLNIDLNHTGQILNNFKGIE---- 310

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R     +       +++ +  P S   ++     +        + V G   E+  LS
Sbjct: 311 --HRLELVKSVQNVMFYNDTASTIPESTVLSVKS---LKTKDNRINLIVGGTDKELDFLS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
            S    +         + + + G   + +   L +S I     +++     +       G
Sbjct: 366 FSKITYIVR-------TWILIRGSATVKIIKILEKSSIQYFLFDSLRDAVNYAFKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNNL 450


>gi|264680248|ref|YP_003280158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
 gi|262210764|gb|ACY34862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni CNB-2]
          Length = 634

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 99/361 (27%), Gaps = 34/361 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFE 166
             ++ ITG+ GKTT   +    L     +    G+   + +                + E
Sbjct: 250 PKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLDTLSARIDAETLPQAWVLE 309

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI----EEIASAKAEIFEGLEKTGT 222
           L    L           P  A +  I   HL    G+    +  A    E    +     
Sbjct: 310 LSSFQLD----DCRGFEPTAATVLNITQDHLDWHGGMQAYADAKAHVFGEQALMVLNRED 365

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----- 277
             +         + +K      +   SFG            +  +  +W+    +     
Sbjct: 366 PVVMAMLPAPVAVPSKRGKTFQRAHVSFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETS 425

Query: 278 --------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        +    +      N +  L  +++ T    T    L       G   R
Sbjct: 426 KGKNADDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHR 485

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +     G     D+S   N  +      V + +    + R + +LG + + G+      
Sbjct: 486 VQPVGRVGDVEYFDDSKGTNVGAT-----VAALMGLGPDHRIVVILGGLGK-GQDFTPLA 539

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++  +         L G     +++AL    + +  + +M              D V+
Sbjct: 540 APVSRYVRAA-----VLIGQDAPLIREALGDTGVTLVDAASMQDAVQQAARLAHANDAVL 594

Query: 449 V 449
           +
Sbjct: 595 L 595


>gi|114330272|ref|YP_746494.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314677|sp|Q0AJE2|MURC_NITEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114307286|gb|ABI58529.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosomonas eutropha C91]
          Length = 473

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 80/439 (18%), Positives = 153/439 (34%), Gaps = 46/439 (10%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           H      +Q  A  VV++T +      +       IPV         +  LA   RL   
Sbjct: 55  HTHAAENIQS-ADAVVISTAIQPDNPEVIAARERRIPVV----PRAMM--LAELLRLHQG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++   L+   +    +          +         +F + E 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASILAEAGQDPTFVIGGRLKT---VDSHARLGKGEFIVVEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLN 226
             S           ++P + V+T I   H+S +            E  E L   G   L 
Sbjct: 162 DES-----DASFLYLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVLC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD     +             +   ++           +    + + V    +++++  
Sbjct: 217 ADDPHVSAIIPMVSKQVTTYGITSENAQIRATDIRHDQCKMHFCAHIGVNGSARTLDITL 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DE 344
           +  G H   N L  + + + L    +  +KAL+ F   + R ++Y         +    +
Sbjct: 277 NLPGKHNVLNALAAIAVGNELNIPDEAMVKALATFGGVDRRFQQYGEIRLPDRRSFTLID 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +PA + A ++      P        VL         ++    D   VLS  +   +
Sbjct: 337 DYGHHPAEIAATMAAARNAFPGR----RLVLVFQPHRYSRTRDLFEDFVRVLSSADALLL 392

Query: 402 SHVWLSGFHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + ++ +G   +   D+  L R+I V       Y E ++ L   + + + +GDVV++  + 
Sbjct: 393 TEIYSAGEEPIIAADSKSLVRAIRVQGKIEPIYIEHINELKSAVHTVVQEGDVVLIMGAG 452

Query: 454 SCGFYRLINLLLEEFPAIQ 472
           S G  ++   L E  P ++
Sbjct: 453 SIG--KIAPGLAE--PTMK 467


>gi|282857260|ref|ZP_06266500.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
 gi|282584910|gb|EFB90238.1| UDP-N-acetylmuramate--L-alanine ligase [Pyramidobacter piscolens
           W5455]
          Length = 476

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 116/352 (32%), Gaps = 31/352 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  +++  L                  V   L  +  +   G+ E  ++
Sbjct: 116 IGVAGTHGKTTTTSLISYILEQADMQPTIA--------VGGELCDIGCNAKLGMGEYMVA 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L E         P  +V+T +   H++ +  ++ +  A        ++ G +FL  +D+
Sbjct: 168 ELDESDESFEYFHPLYSVVTNVDWDHVNQYPDLQAVIDAFGRFLRNTKEGGKLFLCGEDA 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL--QGKSMEVVHHGI 288
             + +           +Y FG+  + DF     +                K   +     
Sbjct: 228 GVKKVIEALPNDLKNRMYLFGRDPSFDFYAADIQYHCGGGLNYTFYAKGRKMGTIELVIS 287

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   + L   G+   L    D   KA+ +FH  + R    +         L+ + Y  
Sbjct: 288 GEHNVLDSLAACGVAHELGVSFDIVQKAMRMFHGAKRRL---QLRAMCPDNILVYDDYGH 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +P  ++A ++ +  + P        +L         +Q+     AEVL+  ++  V L  
Sbjct: 345 HPREIEATLNAVRLMYPDR----RILLIFQPHRYTRTQALFDRFAEVLA--SVPQVVLLP 398

Query: 408 ----------GFHVLAL-KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                     G     +             ++          S +  GD+++
Sbjct: 399 IYAADEQPIPGVSSELIGATVAKLGGSCVLAQNKVEAAGRALSLVRPGDLIL 450


>gi|197334019|ref|YP_002155024.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
 gi|197315509|gb|ACH64956.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri MJ11]
          Length = 447

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 116/365 (31%), Gaps = 29/365 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L      Y         +G     AR+   + F +     
Sbjct: 93  VLAVAGTHGKTTTSSMLAWVLEE--CGYKPGFLVGGVLGNFGESARLGESMFFVVEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +       RP   V+  +   H   F  +  I      +   +  TG IF    
Sbjct: 151 DSAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSTGRIFAPKQ 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  +         +S  +    D Q +  K   + S  +V  +G+ +  V    
Sbjct: 211 DKPLEQVLEQGC-------WSELEFTGEDGQWKAIKLQKDGSQFDVYFEGEKVGQV--NW 261

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L +V+       T   A           +R          T+ D+  + 
Sbjct: 262 DLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKGEVNGVTVYDDFAHH 321

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G    +         SL+    V+
Sbjct: 322 ---PTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTL------AASLHAADSVY 372

Query: 406 LSGFH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L     +    D + +      H    +D     I +    GD ++V  SN  GF  +  
Sbjct: 373 LYQPDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILV-MSNG-GFEGIHG 430

Query: 463 LLLEE 467
            LL  
Sbjct: 431 KLLSR 435


>gi|126729253|ref|ZP_01745067.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
 gi|126710243|gb|EBA09295.1| UDP-N-acetylmuramate--L-alanine ligase [Sagittula stellata E-37]
          Length = 465

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/403 (18%), Positives = 126/403 (31%), Gaps = 47/403 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV     V  A   LA   RL+S    IAI G+ 
Sbjct: 70  GADVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRLKSN---IAIAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L +           N  I             ++ + E   S       
Sbjct: 121 GKTTTTTMVATLLDA---GNFDPTVVNGGIIHAYGSNARMGQGEWMVVEADES-----DG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++  IE +     +    +   G      D    + L  
Sbjct: 173 TFNRLPATIAIVTNIDPEHMEHWGSIENLRQGFYDFVSNIPFYGLAVCCTDHPEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + T     ++      LR  K  +               +     G H   N L
Sbjct: 233 RVTDRRVVTYGFNAQADVRAMGLRYEKGVAHFDVHFQVSGEVIEGMTLPMPGDHNVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L    +    AL+ F     R       + +     I + Y  +P  + A +
Sbjct: 293 SAIAVARHLGMTGEEIRAALAAFGGVNRRFT----KVGEVNGVTIIDDYGHHPVEIAAVL 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWLSGFHV- 411
                     EGR IAV     +    ++  H             +  I+ V+ +G    
Sbjct: 349 KAA---RQASEGRVIAV----HQPHRYTRLHHHFEEFCSCFNEADVVAIAEVYAAGETPI 401

Query: 412 -----LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                  L   L R  H         D L   ++     GD+V
Sbjct: 402 EGATRDDLVAGLVRHGHRHARALRDEDDLERLVREQAQPGDMV 444


>gi|27364038|ref|NP_759566.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus CMCP6]
 gi|29611803|sp|Q8DEL1|MURC_VIBVU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|27360155|gb|AAO09093.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus CMCP6]
          Length = 486

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 133/389 (34%), Gaps = 38/389 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +                  +   G   + ++   E       ++P + ++T I
Sbjct: 147 AGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYG 254

Query: 252 KSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q   +  +  V+   +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYRQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      + +G   
Sbjct: 315 DAILAAMVGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIQA----ARNGWQE 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALKDALPRS 421
           +  V+         ++  + D A VL   ++     V+ +G          +L   +   
Sbjct: 371 KRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 422 IHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +   +      L   + + L +GD+++
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLL 459


>gi|53720634|ref|YP_109620.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76808578|ref|YP_334914.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126441898|ref|YP_001060534.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126454974|ref|YP_001067785.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134280221|ref|ZP_01766932.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|167721339|ref|ZP_02404575.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           DM98]
 gi|167896002|ref|ZP_02483404.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           7894]
 gi|167904389|ref|ZP_02491594.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           NCTC 13177]
 gi|217425709|ref|ZP_03457199.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|226199600|ref|ZP_03795156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813918|ref|YP_002898369.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242315936|ref|ZP_04814952.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254180547|ref|ZP_04887145.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|254191011|ref|ZP_04897517.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199124|ref|ZP_04905539.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|254260254|ref|ZP_04951308.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
 gi|254299365|ref|ZP_04966815.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|59798176|sp|Q63QJ8|MURC_BURPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109892695|sp|Q3JND9|MURC_BURP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222966|sp|A3NZL4|MURC_BURP0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222967|sp|A3NDW3|MURC_BURP6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|52211048|emb|CAH37036.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           K96243]
 gi|76578031|gb|ABA47506.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710b]
 gi|126221391|gb|ABN84897.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           668]
 gi|126228616|gb|ABN92156.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106a]
 gi|134248228|gb|EBA48311.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           305]
 gi|157809030|gb|EDO86200.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           406e]
 gi|157938685|gb|EDO94355.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169656954|gb|EDS88351.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           S13]
 gi|184211086|gb|EDU08129.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1655]
 gi|217391297|gb|EEC31329.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia pseudomallei
           576]
 gi|225928346|gb|EEH24377.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505140|gb|ACQ97458.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           MSHR346]
 gi|242139175|gb|EES25577.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1106b]
 gi|254218943|gb|EET08327.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia pseudomallei
           1710a]
          Length = 465

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 144/410 (35%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +        P I VIT I   H+  +             F    +    + +    
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQA---FIEFTQRLPFYGSAVVC 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             +    +   L  K +  +G + +A  +    +    +    V+ +G+    VV +  G
Sbjct: 217 IDDANVRQIVPLISKPVVRYGFAADAQVRAENVEARDGRMHFTVRREGREPLPVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L        +AL+ F+    R +RY      G       + Y  
Sbjct: 277 LHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIAAAGGGAYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G       +  AL  AL  +  V   +  T+D +   +     DGDVV
Sbjct: 393 AAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARDGDVV 442


>gi|227529010|ref|ZP_03959059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227351022|gb|EEJ41313.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 458

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/414 (15%), Positives = 125/414 (30%), Gaps = 50/414 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV    +     L          +    +L        +  ++++TGS GKTTT  +  
Sbjct: 75  VVVKNPGIPYDNPLVAKFVEKKTPIITEAELGWEI---FEGHLVSVTGSNGKTTTTTLTQ 131

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFLTHLVRPHI 186
           + ++           Y  +IGV  +     +  +   + EL    L        ++RPHI
Sbjct: 132 LMIAKSNAHRV---EYAGNIGVSFSKVAAELGPEDTLVTELSSFQLLGA----PIIRPHI 184

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A+IT I   HL      E   +AK  I         + +N+D   ++ +  +S A     
Sbjct: 185 AIITNIFSNHLDYHKTRENYINAKLNITRNQTSDDYLIMNWDRDEWQQIARRSQA--TIV 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
            +S     +        K                       IG    +N L  +    + 
Sbjct: 243 PFSRQNKSHDGSYEEDGKIYWRG-------DYIMDAKDIRLIGPQNVENALAAIAAAKLS 295

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  +  L+ F     R    +   +       ++S + +  + + A+    Q    
Sbjct: 296 GVTNQDIVDVLTSFSGVRHRL---QYVTDYQGRRFYNDSKSTDIEATEVALQGFEQPVIL 352

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
             G            G         L       ++  + + G     +KDA  ++     
Sbjct: 353 LAG------------GLDRGYTFERLVPYFKK-HVKAIIVFGQCKDKMKDAAEQAGIPTI 399

Query: 427 SETMDG--LFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLE 466
            E+ +              GDV+++    +S             F   ++ L++
Sbjct: 400 IESENAITAVPEAWKVSDPGDVILLSPANASWDQFPSFEVRGDKFIEAVDNLIK 453


>gi|20094189|ref|NP_614036.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
 gi|19887208|gb|AAM01966.1| UDP-N-acetylmuramyl tripeptide synthase [Methanopyrus kandleri
           AV19]
          Length = 480

 Score = 56.4 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 77/498 (15%), Positives = 143/498 (28%), Gaps = 80/498 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFAI------KGPHYDGHDFI 57
            T  +L + ++G      P   + G  S   R+    +    I      KG         
Sbjct: 3   LTVRELAENVEGEIRSGDPDSMIAGWFSTLGRA-KEGD--VVIRWWLDDKG--------A 51

Query: 58  LHAVQKGAGLVVVNTD---MVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIA 112
             A ++G   +V       ++     L IP+    VD       ++A        AT I 
Sbjct: 52  EIASERGVACLVTEHPRGKLIERCDELGIPLILTEVDRANEYALRVAREKCA-PDATAIC 110

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGIFEL 167
           +TG+ GK+TT  +L   L +      C   + +        V     R     D+   E+
Sbjct: 111 VTGTNGKSTTNHLLHHILDTAGFDAYCNTDFRSEKNTLIDPVVAMELREERPEDYLCVEV 170

Query: 168 GMSHLGEIRFLTHLV--------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                     +            +  +AV+T +   H +  S +EE+  A   +   L K
Sbjct: 171 SEVQGLPTGRIMEDHAYRMAKALKCELAVVTNVGVDHTNLVSSLEEMVDAVYGVVRALRK 230

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   LN DD +   +  +                  D      ++   + W+ +  +  
Sbjct: 231 GGIAVLNRDDRYVRRMTREGVETV---------WYGWDEGYSHIEERDGEEWIVLDEEPL 281

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                      H   N L  +     L  D +   + L  + P +      R        
Sbjct: 282 IPVREFPLPVDHFLYNALAAVAAAGALGIDREDIAEGLRTYQPLK------RRFERLCDD 335

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            LI + +  NP  + A +  L ++         A+       G      +  +A  L+  
Sbjct: 336 PLIYDDFCHNPDGVLATVRALRRLGRSKVIVVFAI------RGSRGVDINRQIARALAEG 389

Query: 400 NIS------HVWLSGFHVLALKDALP----------------RSIHVHYSETMDGLFLFI 437
                    HV +       L D                     I   + + ++      
Sbjct: 390 AKDLQDEGIHVHVIATSSEGLVDDANVVRPEERRAFLEELERSGIDYEHYDRLEDALERA 449

Query: 438 QSSLVDGDVVVVKSSNSC 455
                D  V+++  +   
Sbjct: 450 LDLADDDTVILLGGAQGM 467


>gi|88807416|ref|ZP_01122928.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
 gi|88788630|gb|EAR19785.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7805]
          Length = 462

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 109/403 (27%), Gaps = 53/403 (13%)

Query: 91  VLGALNKLAVAARLRSK--------ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
            L AL       R               I ITG+ GKTT   +L   L+         G+
Sbjct: 85  TLHALRAHGFRVRGEMSVAWDALRGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGN 144

Query: 143 YNNHIG--VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                       L       D+ + E+    +     ++    P I + TT+ P HL   
Sbjct: 145 VGYSAAELALEVLQGTRPKPDWVVMEMSSYQIEAAAEVS----PRIGIWTTLTPDHLERH 200

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             IE   + K  + E  E                ++          I       ++    
Sbjct: 201 GTIEAYRAIKRGLLERSEIPVLNA------DDADIRQHCGHWSRSCIRWVSCGDHSPEGG 254

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                 + Q W+    Q           G H  QNML+             T   AL  F
Sbjct: 255 NPQLTVNAQGWVSRGEQHLFPADSLPLPGEHNRQNMLLVTAAALAAGVSASTIEAALRCF 314

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                R +            + ++S   N  +    +  +           + + G   +
Sbjct: 315 TGVPHRLEPLGSVGGIP---VFNDSKATNYDAAAVGLRSVQA-------PVVLLAGGQTK 364

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFI 437
            G+            L    ++ V L G     L D +     +  + +   +D      
Sbjct: 365 KGDAVPWL------KLIQSQVAGVVLFGEGAGELADLIETSGFAGPMIHCADLDSAVSQA 418

Query: 438 QSSLVD---GDVVV--VKSS---------NSCGFYRLINLLLE 466
            S   +     V++    +S             F +LIN + +
Sbjct: 419 LSLARNCQANSVLLSPACASFDQYPNFEARGDHFRQLINAVKD 461


>gi|291528773|emb|CBK94359.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale M104/1]
          Length = 459

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A+  +  IP+          L ++            IA+ G+ GKTTT 
Sbjct: 76  TAAIHESNPEFAAAKAAGIPML----TRAELLGQIMDNYDYS-----IAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L + +       + +    +      + V       E  +S   E        R
Sbjct: 127 SMISEILLAAQTD----PTISVGGILSSIHGNLRVGD----SEYFISEACEYTNSFLNFR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  ++I  I   HL  F  I +I  +  E        G   +N +   +E + A      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDRYEEIVA----GL 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + I ++G     DF         +   S+  ++      +V     G H   N L  + 
Sbjct: 235 PQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + L  D ++ +  L  F   + R +             I + Y  +P  ++A ++   
Sbjct: 295 LSTTLGLDTESILTGLDKFGGADRRFQYKGKVNG----VTIIDDYAHHPTEIRATLTAAQ 350

Query: 362 ---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A L D  ++  ++    +         N       G    
Sbjct: 351 KYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQN-----TYGISSK 405

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL---LLEE 467
            + D L  + ++ HY  + + +  F+  + V+GD +++      G   ++ +   LL++
Sbjct: 406 DILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGD-LLIT----MGAGNVVEIGEDLLKK 459


>gi|254831722|ref|ZP_05236377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 10403S]
          Length = 455

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|52142904|ref|YP_083926.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
 gi|51976373|gb|AAU17923.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6-diaminopimelate ligase
           [Bacillus cereus E33L]
          Length = 357

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 97/314 (30%), Gaps = 28/314 (8%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI--EEIASAK 210
                 + D+ + E+    L   R      +  IAV T +   HL         +     
Sbjct: 30  QMMKNRNADYCVMEVTSQGLHMERVKGCNFK--IAVFTNLTQDHLDYHGTFLEYKHVKGL 87

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                G + + T       +  +        +    + ++G    AD Q +      +  
Sbjct: 88  LFARLGNDLSTTEKKIAVLNADDPSVEYFKKITSAEVITYGIHNRADVQAKNINLSPKGI 147

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V      +EV  + +G     N L  + +  +    +     +LS     EGR +  
Sbjct: 148 RFLVSSFNGEIEVSLNLVGRFNIYNALAAITVAIVEGIPLTNICDSLSNLKSIEGRMEII 207

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               +         + +A         +VLS IS   +G+ I V G     G    +   
Sbjct: 208 DENQDFFVIVDYAHTPDA-------LENVLSTISEFSKGKVITVFG----CGGDRDAKKR 256

Query: 391 DLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHY-SE-TMDGLFLFIQS 439
            +   ++      V+++  +         +  ++    ++ +++Y  E   +       +
Sbjct: 257 SIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFSQNNNLNYKVEVDRELAINHAIN 316

Query: 440 SLVDGDVVVV--KS 451
                D+V++  K 
Sbjct: 317 MASSNDIVLIAGKG 330


>gi|224498514|ref|ZP_03666863.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes Finland 1988]
          Length = 455

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|197303947|ref|ZP_03168979.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
 gi|197296915|gb|EDY31483.1| hypothetical protein RUMLAC_02684 [Ruminococcus lactaris ATCC
           29176]
          Length = 458

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 128/382 (33%), Gaps = 43/382 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  M++  L +                    
Sbjct: 101 ELLGQLMKNY-----DTPIAVSGTHGKTTTTSMISEVLLAADMDPTISVGGILKT----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G     ++   E         P I+VI  I   HL  F  +E+I  +  +
Sbjct: 151 ---IGGNIRVGKSGNFITEACEYTNSFLHFYPKISVILNIEEDHLDFFKDLEDIRHSFHQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
               L   GT+ +N D   ++ +           + ++G S   D+   + +   +   S
Sbjct: 208 FSALLPSDGTLIINGDIKDYQEIYE----GLDCNVITYGSSAEFDYSATEIQYDEKGFVS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  ++       V     G H   N L  +    +L   +DT  K L  F   + R +  
Sbjct: 264 FELLKHNTSCGRVQLSVTGDHNVSNALAAIATAELLGIPMDTIRKGLLSFSGTDRRFEY- 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEM 381
                      + + Y  +P  + A +                PH   R  A   +  E 
Sbjct: 323 ---KGTFNGVTVVDDYAHHPTEIAATLKAAQHYPHNEIWCVFQPHTYTRTKAFFHEFAE- 378

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIHVHYSETMDGLFLFIQSS 440
             LS + H+ LA++ +      +   G     L  +A       HY  +   +  F++ +
Sbjct: 379 -ALSHTDHLVLADIYAARETDTL---GISSSDLAKEAAKLGTDTHYYPSFAEIEAFLKEN 434

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
              GD +++      G   ++ 
Sbjct: 435 CKSGD-LLIT----MGAGDVVK 451


>gi|83721549|ref|YP_441667.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|167618582|ref|ZP_02387213.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           Bt4]
 gi|257137836|ref|ZP_05586098.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           E264]
 gi|109892697|sp|Q2SZI2|MURC_BURTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|83655374|gb|ABC39437.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia thailandensis
           E264]
          Length = 465

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 85/411 (20%), Positives = 144/411 (35%), Gaps = 40/411 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDD 229
               +        P I VIT I   H+  +            E  + L   G+  +  DD
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCIDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGI 288
                +        +     +G + +A  +    +    +    V +   + + VV +  
Sbjct: 220 PNVRQIVPLISKPVV----RYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLNLP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYN 347
           G H  QN L  + I + L        +AL+ F+    R +RY       G    + + Y 
Sbjct: 276 GLHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEMPAAGGGAYTLIDDYG 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHV 404
            +P  M A I+      P        VL         ++    D   +   +    ++ V
Sbjct: 336 HHPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEV 391

Query: 405 WLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           + +G       +  AL  AL  +  V   +  T+D +   +      GDVV
Sbjct: 392 YAAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVV 442


>gi|290961154|ref|YP_003492336.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Streptomyces
           scabiei 87.22]
 gi|260650680|emb|CBG73796.1| putative UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Streptomyces scabiei 87.22]
          Length = 473

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/391 (17%), Positives = 120/391 (30%), Gaps = 45/391 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +A+TG+ GKTTT +ML   L++         +   +IGV L    +
Sbjct: 100 ELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASILTAAGLR----TAAVGNIGVSLLDVVL 155

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         +R H A +  +AP HL     +E  A+ K  ++E
Sbjct: 156 GDEPYDVLAVELSSYQLHWA----PSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRVYE 211

Query: 216 GLEKTGTIFLNY-DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK-QCSEQSWME 273
           G        ++  D    E L  ++          F        QL        +++++E
Sbjct: 212 GNRVACVYNVDATDKPSTEDLVREADVEEGCRAVGFTLGTPGPSQLGVVDGILVDRAFVE 271

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + +          +      N+   L   ++  A    A               R    
Sbjct: 272 NRQKNAQELAEVADVNPPAPHNIANALAAAALARAYGVPAAAVRDGLRAFTPDAHRIAHV 331

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      ID+S   N  + +A+++    I     G       D    G           
Sbjct: 332 ADVDGVAYIDDSKATNTHAAQASLAAYESIVWIAGGLAKGATFDELVAG----------- 380

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGD 445
              +   +    L G     +++AL R         +D              ++    GD
Sbjct: 381 ---AAGRLRGAVLIGADRALIREALARHAPEVPVVDLDRTDTGAMPAAVREARTLARAGD 437

Query: 446 VVVV---KSS---------NSCGFYRLINLL 464
            V++    +S             F   +  L
Sbjct: 438 TVLLAPACASMDMFVNYNKRGDAFAEAVREL 468


>gi|323699056|ref|ZP_08110968.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio sp. ND132]
 gi|323458988|gb|EGB14853.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio desulfuricans
           ND132]
          Length = 483

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 118/386 (30%), Gaps = 42/386 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IP+         +  LA   RL++    IA+ G+ GKTTT  +L    + 
Sbjct: 96  PELVAARERGIPII----PRAEM--LAELMRLKTG---IAVAGTHGKTTTTSLLATIFTE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I     +            + D+ I E   S           + P I V+T I
Sbjct: 147 AGLDPTVIIGGRLNT---YGANARLGEGDYLIAEADES-----DGSFLRLAPIITVVTNI 198

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  +   + I  +           G   +  DD   + L             ++G 
Sbjct: 199 DKDHMDFYDNQDAIDLSFMRFMNSTPFYGMNVVCGDDEGVQRLLPLIKRP----YLTYGL 254

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            K    +           +       +  EV     G H   N L  +G+   +  D + 
Sbjct: 255 GKQNKLRGEIVSSHLRSLFKVWLDGEEWGEVTVAQPGTHNVLNALACIGVALEVGLDKEE 314

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---------- 362
            I+ L  F     R +R           ++ + Y  +PA + A +    +          
Sbjct: 315 IIQGLGNFGGVGRRFERKGEKKG----VIVVDDYGHHPAEIMANLRTAKECYPDRRLVVA 370

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
             PH   R  A+ G+ C+    +    +      S   I      G   L+L   + +  
Sbjct: 371 FQPHRFSRTKALFGEFCKAFGDADILLLTEIYPASESPI-----PGVSGLSLAQGIKQVS 425

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV 446
              V +    + L   ++  L  GD+
Sbjct: 426 ETKVQFFPDFESLEKRLKDLLQPGDL 451


>gi|311068041|ref|YP_003972964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
 gi|310868558|gb|ADP32033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           atrophaeus 1942]
          Length = 451

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 112/345 (32%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +  +     G+      V   +A      ++ + E
Sbjct: 112 DAKFIGITGSNGKTTTTTLIYEMLKADSQKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RPHI++I  +  AHL      E    AK  ++    ++ T  +N
Sbjct: 169 LSSFQLMGTH----AFRPHISLILNVFDAHLDYHHSRENYEKAKQNVYLHQLESDTAVVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     L     A  +    +         +  +   C +   +    +         
Sbjct: 225 QDDETVVRLAEAGKAASLAFSAT---------KPLERGACVKDGMILFDNEAILSLEDVV 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  +N+L  + +V    A  +   K L+ F   + R    +           ++S 
Sbjct: 276 LPGAHNLENILAAVAVVKTAGASNEAIKKVLTSFTGVKHRL---QYVTTIQDRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S   +         + +L    + G         +       N+  +  
Sbjct: 333 ATNVLATSKALSAFEK--------PVLLLAGGLDRGNGFDELKPYM------QNVKAILT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     L+         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKLEKLGAELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|149910625|ref|ZP_01899263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
 gi|149806353|gb|EDM66328.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Moritella sp.
           PE36]
          Length = 445

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 108/371 (29%), Gaps = 46/371 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIF 165
           KA IIAITGS GK+T   ++    ++         +   +IG+P        +     + 
Sbjct: 108 KAPIIAITGSNGKSTVTTLVGEMANAAGV----KTAIGGNIGIPALDLLDVAEPYQLYVL 163

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      TH ++   A +  +   HL  +   E    AK  I++  +   T   
Sbjct: 164 ELSSFQL----ETTHSLKAVAATVLNVTDDHLDRYPDFEAYRQAKLSIYQDAQTIVTNRD 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +                          S  AD       Q    +W+  Q +G       
Sbjct: 220 DVLT----------VCATQDNRDVGKHSVGADDADYGLIQQQGCTWLAYQGEGIISADDL 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + ++     D    +  L  F     R               I+++
Sbjct: 270 QITGVHNLMNALSAIALLDAAGVDRIKTLPGLKQFTGLAHRC---EFIRKLNDVMWINDT 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +    ++ L  +    +GR   + G   +  +                +I+  +
Sbjct: 327 KATNVGAT---LAALDGLKSSVKGRLYLIAGGDGKGADFGP------LVPALRDDIALTY 377

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
             G   +        +        +D     I   +  GD V++    +S          
Sbjct: 378 CFGKDGVRFAGLAENTK---LVADLDTAIAEISQLVQPGDWVLLSPACASIDMYANFMAR 434

Query: 454 SCGFYRLINLL 464
              F  L+  L
Sbjct: 435 GDHFRALVKAL 445


>gi|159044963|ref|YP_001533757.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
 gi|157912723|gb|ABV94156.1| UDP-N-acetylmuramate--L-alanine ligase [Dinoroseobacter shibae DFL
           12]
          Length = 470

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 127/411 (30%), Gaps = 45/411 (10%)

Query: 56  FILHAVQKGA---GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           FI    +  A    +V+ +     +    +    G+  V  A   LA   RL+S    IA
Sbjct: 66  FIGQVGENLADAEVVVISSAIKPGNPELETARARGLPVVRRA-EMLAELMRLKSN---IA 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  M+      + +        N  I             ++ + E   S  
Sbjct: 122 IAGTHGKTTTTTMVATL---LDRGGIDPTVINGGIIHAYDSNARAGAGEWMVVEADES-- 176

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                  + +   IAV+T I P H+ ++   E +     E    +   G      D    
Sbjct: 177 ---DGTFNRLPATIAVVTNIDPEHMEHWGSFERLKDGFHEFVSNIPFYGLAVCCTDHPEV 233

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIG 289
           + L  +        + +FG +  AD +       S  +  +                  G
Sbjct: 234 QALVGRITDR---RVVTFGFNTQADVRAVNLTYKSGVAHFDILLRNEGQVISGCTLPMPG 290

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L  + +   L    D    AL+ F     R  +            I + Y  +
Sbjct: 291 DHNVSNALAAVAVARHLGMKRDEIRAALAGFAGVNRRFTKVAELGG----VTIIDDYGHH 346

Query: 350 PASMKAAISVLSQISPHGEGRRIAV-----LGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           P  + A +          EGR IAV        +  + E   +   +      +  IS +
Sbjct: 347 PVEIAAVLKAA---RQASEGRVIAVHQPHRFSRLASLFEDFCTCFNE----ADVVGISDI 399

Query: 405 WLSGFHV------LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
           + +G           L   L    H H       D L   I++    GD+V
Sbjct: 400 FAAGEDPIPGASRDDLVKGLIAHGHRHAVAVPDEDALEALIRAEAKPGDIV 450


>gi|254496588|ref|ZP_05109456.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
 gi|254354212|gb|EET12879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella drancourtii LLAP12]
          Length = 454

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 147/412 (35%), Gaps = 36/412 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G    V+   + A     S P +  +++L             SK  +IAI+G+
Sbjct: 67  VGNAIKRGMP--VLEAVIEAGKSYTSGPQWLAENIL-------------SKYQVIAISGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  M++  L         +    +        +       + + E     S   +
Sbjct: 112 HGKTTTTSMVSWILDQAGLNPGFLIGGVSSD---FKTSARLGGGKWFVIEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      RP IA++  +   H   +  +E I      +   +  +G      DD     
Sbjct: 169 KRPKFMHYRPRIAILNNLEFDHADIYPNLEAIQMQFHYLLRTIPASGVAIKPRDDKALNE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           + A+     I+ I   G ++ +   +         ++  +    +  EV    IG    +
Sbjct: 229 VIARGQYSRIEEIALAGDAQWSVTFIEDN----GSAFKVLHYGEEIAEVHWSLIGRFNVE 284

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +            A +AL  F P + R +      +      + + +  +P ++ 
Sbjct: 285 NGLAAIAASVNAGVSPKVAAEALERFTPVKRRLE----VKSNKHGITVYDDFAHHPTAIT 340

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
             I  L     +   R  AVL +       +     ++AE L+   ++  ++   +   L
Sbjct: 341 RTIDALK--RSNRHRRIFAVL-EFASYTMRTGIHAAEMAEALAP--VNGAYILEPNDFNL 395

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           K+ +   +      +  D +   + S + DGD V+V  SN  GF  +   L+
Sbjct: 396 KETVNNWTCPYQICKDTDEIANEVASQVQDGDAVLV-MSNR-GFNGIHQQLI 445


>gi|16804075|ref|NP_465560.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes EGD-e]
 gi|224501164|ref|ZP_03669471.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL R2-561]
 gi|30316084|sp|Q8Y5M1|MURD_LISMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16411506|emb|CAD00114.1| murD [Listeria monocytogenes EGD-e]
          Length = 455

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQI 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|288563201|pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D-
           Glutamate (Murd) Ligase From Streptococcus Agalactiae To
           1.5a
          Length = 451

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/390 (19%), Positives = 135/390 (34%), Gaps = 45/390 (11%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTT 122
           +++ D    I +  IP      V  AL K          A L S++ +I ITGS GKTTT
Sbjct: 68  LLDEDFCYXIKNPGIPY-NNPXVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
              +   L++  +     G    +IG P   + +   D D  + EL    L  ++     
Sbjct: 127 TTXIAEVLNAGGQR----GLLAGNIGFPASEVVQAANDKDTLVXELSSFQLXGVKEF--- 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RPHIAVIT + P HL      E+  +AK  I      +  + LN++    + L      
Sbjct: 180 -RPHIAVITNLXPTHLDYHGSFEDYVAAKWNIQNQXSSSDFLVLNFNQGISKELAK---T 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                +      K     ++  +   +        +           G H  +N L T+ 
Sbjct: 236 TKATIVPFSTTEKVDGAYVQDKQLFYKG-------ENIXSVDDIGVPGSHNVENALATIA 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +         + LS F   + R    +        +  ++S + N  +         
Sbjct: 289 VAKLAGISNQVIRETLSNFGGVKHRL---QSLGKVHGISFYNDSKSTNILA------TQK 339

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
            +S     + I + G     G    +   +L   +    + H  + G     +K A  ++
Sbjct: 340 ALSGFDNTKVILIAG-----GLDRGNEFDELIPDI--TGLKHXVVLGESASRVKRAAQKA 392

Query: 422 IHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
             V YS+   +             GDV+++
Sbjct: 393 G-VTYSDALDVRDAVHKAYEVAQQGDVILL 421


>gi|238922862|ref|YP_002936375.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
 gi|259509771|sp|C4ZBV1|MURC_EUBR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238874534|gb|ACR74241.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale ATCC
           33656]
          Length = 459

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A+  +  IP+          L ++            IA+ G+ GKTTT 
Sbjct: 76  TAAIHESNPEFAAAKAAGIPML----TRAELLGQIMDNYDYS-----IAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L + +       + +    +      + V       E  +S   E        R
Sbjct: 127 SMISEILLAAQTD----PTISVGGILSSIHGNLRVGD----SEYFISEACEYTNSFLNFR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  ++I  I   HL  F  I +I  +  E        G   +N +   +E + A      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDRYEEIVA----GL 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + I ++G     DF         +   S+  ++      +V     G H   N L  + 
Sbjct: 235 PQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + L  D ++ +  L  F   + R +             I + Y  +P  ++A ++   
Sbjct: 295 LSTTLGLDEESILTGLDKFGGADRRFQYKGKVNG----VTIIDDYAHHPTEIRATLTAAQ 350

Query: 362 ---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A L D  ++  ++    +         N       G    
Sbjct: 351 KYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQN-----TYGISSK 405

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL---LLEE 467
            + D L  + ++ HY  + + +  F+  + V+GD +++      G   ++ +   LL++
Sbjct: 406 DILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGD-LLIT----MGAGNVVEIGEDLLKK 459


>gi|167571348|ref|ZP_02364222.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia oklahomensis
           C6786]
          Length = 464

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 87/410 (21%), Positives = 145/410 (35%), Gaps = 39/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLGVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDD 229
               +        P I VIT I   H+  +            E  + L   G+  +  DD
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCIDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGI 288
                +        +     +G + +A  +    +    +    V +   + + VV +  
Sbjct: 220 PNVRQIVPLISKPVV----RYGFAPDAQVRAENVEARDGRMHFTVLREGREPLPVVLNLP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  QN L  + I S L        +AL+ F+    R +RY      G    + + Y  
Sbjct: 276 GLHNVQNALAAIAIASDLDVADAAIQQALAEFNGVGRRFQRYGEIPVAGGAYTLIDDYGH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 336 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 391

Query: 406 LSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G       +  AL  AL  +  V   +  T+D +   +      GDVV
Sbjct: 392 AAGEAPITTANGDALSRALRAAGKVEPVFVATVDEVPDALAKVARVGDVV 441


>gi|320157422|ref|YP_004189801.1| UDP-N-acetylmuramate--alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319932734|gb|ADV87598.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 486

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 133/389 (34%), Gaps = 38/389 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +                  +   G   + ++   E       ++P + ++T I
Sbjct: 147 AGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYG 254

Query: 252 KSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q   +  +  V+   +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYRQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      + +G   
Sbjct: 315 DAILAAMIGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIHA----ARNGWQD 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALKDALPRS 421
           +  V+         ++  + D A VL   ++     V+ +G          +L   +   
Sbjct: 371 KRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 422 IHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +   +      L   + + L +GD+++
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLL 459


>gi|269967387|ref|ZP_06181447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
 gi|269827975|gb|EEZ82249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           alginolyticus 40B]
          Length = 437

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 128/372 (34%), Gaps = 56/372 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GK+T  ++  +   +             +IGVP     +  D D  + EL 
Sbjct: 109 PVIAITGSNGKSTVTDLTGVMAKAAGLDV----GVGGNIGVPALDL-LEQDADLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L         ++   A    ++  H+  + G+ +   AK  IF              
Sbjct: 164 SFQL----ETMSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH----------AA 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +       ++       + +FG    +D Q   ++    ++W+    Q          +
Sbjct: 210 LAVVNRDDQETFPDAEMPLVTFG----SDNQDFGFEVDGNRTWLLDHGQRVVASDELKLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+ L ++     +   A+ AL  +     R    +   +      +++S   
Sbjct: 266 GKHNLSNALVALALLKAADVNYHNALNALKNYTGLTHRC---QVVADNQGVKWVNDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +   G
Sbjct: 323 NIASTMAALSGL-----ESTGKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                    +P        +TM+ +   + S L  GD+V++    +S             
Sbjct: 372 ADGDEF---MPLHESAIRFDTMEDVIQQVSSQLKPGDMVMLSPACASFDQFDNFMARGDA 428

Query: 457 FYRLINLLLEEF 468
           F      L +++
Sbjct: 429 F----AALAQKY 436


>gi|260424625|ref|ZP_05732710.2| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
 gi|260402591|gb|EEW96138.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           invisus DSM 15470]
          Length = 456

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 92/320 (28%), Gaps = 36/320 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            + G+    +S             P  AVI  I P H+     +E   +AKA IFE + K
Sbjct: 159 AEDGVIAAEVSSF--QLEFIKDFCPKAAVILNITPDHIERHHTMERYVAAKARIFENMGK 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN +D +  +L  K+    +         +              +  +       
Sbjct: 217 DNCLLLNAEDEYTPILMKKAKNTTVCLFSISRDVEEGACLNGADLVIKRRGKVLKVAGID 276

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G    QN+L    +       ++     +  F     R             
Sbjct: 277 ----ELQLTGNQNYQNVLAAAFLAYEGGIPLEAIHDGIIEFKGLPHRI---EFVRELDGV 329

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +  ++S   N  +    +   ++      G            G    +      + +   
Sbjct: 330 SYYNDSKATNTDAAIKGMETFNRPIILIAG------------GYDKHTKLDKFMKTVKAR 377

Query: 400 NISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            +  + L G      KD   ++    +  ++ M G     +S    GDVV++    SS  
Sbjct: 378 -VKCLILLGNAAARFKDEAEKAGIKTIVLADDMRGAVEKGKSIACSGDVVLLSPACSSFD 436

Query: 453 -------NSCGFYRLINLLL 465
                      F +++N L 
Sbjct: 437 MYANYEARGFDFKKIVNRLK 456


>gi|156973219|ref|YP_001444126.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           harveyi ATCC BAA-1116]
 gi|166224769|sp|A7MXR3|MURD_VIBHB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|156524813|gb|ABU69899.1| hypothetical protein VIBHAR_00900 [Vibrio harveyi ATCC BAA-1116]
          Length = 437

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 128/374 (34%), Gaps = 56/374 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IAITGS GK+T  ++  +   +   T         +IGVP     +  D D  + E
Sbjct: 107 DKPVIAITGSNGKSTVTDLTGVMAKAAGLTV----GVGGNIGVPALDL-LEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E        
Sbjct: 162 LSSFQL----ESTLSLKLKAAAFLNLSEDHMDRYEGMSDYRQAKLRIFDNAEL------- 210

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +          +   +  +D Q    +    ++W+    Q         
Sbjct: 211 -------AVVNRDDQETFPDTETPLVTFGSDEQAYGLEADGNRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   ++ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAADVDYHKSLNALKTYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTIAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        +TM+ +   I S L  GD+V++    +S           
Sbjct: 370 FGADGDEF---MPLHESATRFDTMEDVIQQISSQLKTGDMVMLSPACASFDQFDNFMARG 426

Query: 455 CGFYRLINLLLEEF 468
             F      L E++
Sbjct: 427 DAF----AALAEKY 436


>gi|315283075|ref|ZP_07871346.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
 gi|313613283|gb|EFR87156.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria marthii
           FSL S4-120]
          Length = 461

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 97/322 (30%), Gaps = 44/322 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 167 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 222

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 223 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 273

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  ++ L  F   E R    +  +    
Sbjct: 274 IGARDNILLPGEHNLENVLASVAVAKTLGVSNEEIMRVLETFKGVEHRT---QFVVEWQG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 331 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 377

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS-- 452
            N+  + + G     +        I VHY + ++            GD++++    +S  
Sbjct: 378 -NVKSLIVFGETADKIGRVGKIAGIEVHYVDDVEAAVPVAYRESAPGDIILLSPACASWD 436

Query: 453 -------NSCG-FYRLINLLLE 466
                          +  L+ E
Sbjct: 437 QYRTFEVRGNAYMDAISELIEE 458


>gi|254441834|ref|ZP_05055327.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
 gi|198251912|gb|EDY76227.1| UDP-N-acetylmuramate--alanine ligase [Octadecabacter antarcticus
           307]
          Length = 465

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/405 (18%), Positives = 126/405 (31%), Gaps = 42/405 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A      +V+ +     +    +    G+  V  A   LA   R++S    IA+ G+
Sbjct: 68  IEDAE----VVVISSAIKPGNPELDAARQRGLPVVRRA-EMLAELMRMKSN---IAVAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  I             ++ + E   S      
Sbjct: 120 HGKTTTTTMVAALLEE---GKFNPTVVNGGIIHAYGSNARVGSGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++  IE + +   +    +   G      DDS  + L 
Sbjct: 172 GTFNRLPATIAIVTNIDPEHMEHWGTIENLHAGFYDFVSNIPFYGLAVCCTDDSDVQTLV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K     + T     ++      L   K  +    +         +      G H   N 
Sbjct: 232 GKITDRRVVTYGFNAQADVRAINLTYKKGVAHFDVVLQNEDLTIKDCALPMPGDHNVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L    +    AL+ F     R  R            I + Y  +P  + A 
Sbjct: 292 LSAIAVARYLGMKAEEIRAALAAFKGVGRRFTRVGEVGG----VTIIDDYGHHPTEISAV 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------ISHVWLSGFH 410
           +          +GR +AV              H   A+  + +N      I+ V+ +G  
Sbjct: 348 LKAA---RQASDGRILAV-----HQPHRYTRLHHHFADFCACFNDADVVAITEVFAAGED 399

Query: 411 V------LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           V        L   L R+ H           L   ++     GD+V
Sbjct: 400 VIEGATRDDLVAGLIRAGHRDARAITNEADLVALVKEQAKPGDMV 444


>gi|88812510|ref|ZP_01127759.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
 gi|88790296|gb|EAR21414.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-MESO-diamin
           opimelate ligase [Nitrococcus mobilis Nb-231]
          Length = 457

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 75/364 (20%), Positives = 122/364 (33%), Gaps = 30/364 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+TG+ GKTTT  +L           +         G     AR+     F I     
Sbjct: 105 VLAVTGTHGKTTTSSLLA--WILEYAGLSPGFLIGGVPGNFGYSARLGSGDLFVIEGDEY 162

Query: 170 SHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +       RP   VI  +   H   F  +  I      +   +  TG I  N D
Sbjct: 163 DTAFFDKRSKFIHFRPRTVVINNLEFDHADIFPDLAAIQRQFHYLIRTVPSTGLIIANGD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D       A      +     FG   N D++L         +   +  +G++  +     
Sbjct: 223 DQTITDTLALGCWTPVIR---FGTGVNNDWRLEAIDGP--NARATLTGKGQNRAITLPLP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A+N+L  L         +D  I+AL  F     R +R              E Y+ 
Sbjct: 278 GEHNARNILAALLAAQHTGVTLDQGIEALRHFRGVRRRLERRGIVGG-------VELYDD 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                 A  + ++ +    +GR +AVL    +   +G    +         SL     V+
Sbjct: 331 FAHHPTAIAATIAALRGRHQGRILAVLEPRSNTMRLGVHRNTL------AASLQQADRVF 384

Query: 406 LSGFHVLA--LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +     L   L+DA           +E ++ L  +I ++   GD V+V  SN   F  + 
Sbjct: 385 VYRPRTLEWNLEDAFAPLLGERALITEDIECLIDYITAAAQIGDAVLV-MSNG-AFENIH 442

Query: 462 NLLL 465
             LL
Sbjct: 443 ERLL 446


>gi|299533120|ref|ZP_07046505.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
 gi|298718897|gb|EFI59869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Comamonas
           testosteroni S44]
          Length = 634

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 98/361 (27%), Gaps = 34/361 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFE 166
             ++ ITG+ GKTT   +    L     +    G+   + +                + E
Sbjct: 250 PKVLGITGTNGKTTVTSLTGQLLEHGGLSVGVAGNIGPSLLDTLSARIDAETLPQAWVLE 309

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI----EEIASAKAEIFEGLEKTGT 222
           L    L           P  A +  I   HL    G+    +  A    E    +     
Sbjct: 310 LSSFQLD----DCRGFEPTAATVLNITQDHLDWHGGMQAYADAKAHVFGEQALMVLNRED 365

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----- 277
             +         +  K      +   SFG            +  +  +W+    +     
Sbjct: 366 PVVMAMLPAPVAVPGKRGKTFQRAHVSFGGDMPRRPGDFGLEVVNGMTWLVRAHEADETS 425

Query: 278 --------GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                        +    +      N +  L  +++ T    T    L       G   R
Sbjct: 426 KGKNADDLHIVRLMPADALRIRGRHNAINALSALALATGAGCTLAPLLYGLREYRGEPHR 485

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +     G     D+S   N  +      V + +    + R + +LG + + G+      
Sbjct: 486 VQPVGRVGDVEYFDDSKGTNVGAT-----VAALMGLGPDHRIVVILGGLGK-GQDFTPLA 539

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             ++  +         L G     +++AL    + +  + TM              D V+
Sbjct: 540 APVSRYVRAA-----VLIGQDAPLIREALGDTGVTLVDAATMQDAVQQAARLAHANDAVL 594

Query: 449 V 449
           +
Sbjct: 595 L 595


>gi|157369007|ref|YP_001476996.1| UDP-N-acetylmuramate--L-alanine ligase [Serratia proteamaculans
           568]
 gi|167017284|sp|A8G9S8|MURC_SERP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157320771|gb|ABV39868.1| UDP-N-acetylmuramate--alanine ligase [Serratia proteamaculans 568]
          Length = 492

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 135/411 (32%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    L       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPELVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD ++  ++Q   +  +   +     M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVRIESYRQVGPQGHFTLSRQDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D    ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIDDADILRALAGFQGTGRRFDFLGEFPLEPVNGKSGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A +       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATLKAARAGWPDK----RLVMVFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L   D+V+V+ 
Sbjct: 414 ETAIPGADSRSLCRTIRSRGKLDPILVSDADTVPETLAQLLQADDLVLVQG 464


>gi|254430906|ref|ZP_05044609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
 gi|197625359|gb|EDY37918.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cyanobium sp. PCC
           7001]
          Length = 473

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/389 (15%), Positives = 108/389 (27%), Gaps = 42/389 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++  A         I ITG+ GKTT   ++   L +        G+        +   R
Sbjct: 107 GEMVPAWEASRPVPWIGITGTNGKTTVTHLVHHLLEASGLDAPMAGNVGYSAAELVLDRR 166

Query: 156 MPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + + EL    +         V P + + TT+ P HL     +E   + K  +
Sbjct: 167 GSGAELPTWMVVELSSYQI----EAAPEVAPRVGIWTTLTPDHLERHGTLEAYRAIKRSL 222

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               E++    LN DD   +   A        T     +   A       +         
Sbjct: 223 L---ERSQVQVLNGDDPDLQRHAASWPGACWVTAGPRQELPEAIRPHLWVEAGRVIRDHN 279

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              Q           G H  QNM++ +               A   F     R       
Sbjct: 280 GTSQDLMAADCLAMPGEHNRQNMMLAIAAGLEAGLTGQQMECAFRSFPGVPHR---LERI 336

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             Q   +  ++S   N  + + A+  L+       G  + + G   + GE          
Sbjct: 337 DQQAGVSYYNDSKATNYDAAEVAVRALA-------GPLVVLAGGQAKRGEARGWL----- 384

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD--VVV 448
                     V L G       AL +    +  +H  + ++      ++   +     V+
Sbjct: 385 -EALHQKARAVVLFGAAQAEFQALLEGASFAGAIHRCDGLNEAVPLARALAAELHCRAVL 443

Query: 449 V---KSS---------NSCGFYRLINLLL 465
           +    +S             F  L+  L 
Sbjct: 444 LSPACASFDQYTDFEARGEHFRSLVLALR 472


>gi|315122417|ref|YP_004062906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313495819|gb|ADR52418.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 468

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 105/342 (30%), Gaps = 38/342 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             +  IA+TG+ GK++T  +++  L+              +IG P+          F + 
Sbjct: 111 FHSPFIAVTGTNGKSSTVMLISHILNQNGYDVQLG----GNIGNPILNLADFSSHRFYVI 166

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     LT  + P I V+  ++  HL   + +E  A  K ++    +       
Sbjct: 167 ECSSYQID----LTPTIDPSIGVLLNVSIDHLDRHNTLENYARIKKKLVAKSQHAVICMN 222

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +              A  + T        ++           + S ++     K++  + 
Sbjct: 223 DDLCKTV--------ASDMATAGHSMTRISSQPMPSDSDFYIDGSHIKCSSTSKTIFALS 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                +   N+  ++ +   L   +D   +A+S F+    R    +     G    I++S
Sbjct: 275 QEDRRYNMHNVAASIAVCMRLGLKIDEIKRAISSFNGLTHRL---QKIAQLGQVIFINDS 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S+  A     ++     G            G         +   L    ++  +
Sbjct: 332 KATNLHSVMHAFLNEKRVIYWIGG------------GLSKSDDFSIIFPFL--SKVAKAY 377

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             G         L   +     +T+D     +       DVV
Sbjct: 378 FIGDSATIFAHHLREKVECDVFQTLDQALTSVVR-----DVV 414


>gi|157165282|ref|YP_001466906.1| Mur ligase middle domain-containing protein [Campylobacter concisus
           13826]
 gi|112800277|gb|EAT97621.1| Mur ligase family protein [Campylobacter concisus 13826]
          Length = 474

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 38/358 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL KL        +  II IT S GKT+ K  L   L      Y    S N   G+   
Sbjct: 146 KALKKLGA----SKELKIILITASYGKTSIKNFLFEILKDSFVCYKTPRSVNTMAGIIKD 201

Query: 153 LA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +   +       I E G    G+I  +T  + P I ++  I   H+  F  ++ I + K 
Sbjct: 202 INENLSEQTQIYIAEAGARLKGDILEITKFLNPQIVIVGEIGAQHIEYFKTLDNIRTTK- 260

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                                E L+++          +  + +       +  +    + 
Sbjct: 261 --------------------LEALQSERLQRAFLHSSTKKEPRENIEIYDESLKDINANL 300

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +             +G   A N+ + + +   L    +    ALS     E R  +  
Sbjct: 301 DGISFTLDGKNYASPLLGKFNATNLAVCIKVARYLKMSDEAINSALSKMKNVEHRLSKIE 360

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    +ID+S+N N + M A+  ++S  +    GR++ +   + E        + +
Sbjct: 361 AGGK----LIIDDSFNGNFSGMSASYELVSTYA----GRKVLLTPGIVE---SDAEQNAN 409

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           LA+V++      +  S  +   L   + +   +   +  + +   +  +   GD+++ 
Sbjct: 410 LAKVINEIFDLVIITSSLNAEVLLKHIVKPK-IIILKDKNKMQEILAQNTHAGDLILF 466


>gi|37678799|ref|NP_933408.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio vulnificus YJ016]
 gi|44888162|sp|Q7MNV0|MURC_VIBVY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|37197540|dbj|BAC93379.1| UDP-N-acetylmuramate-alanine ligase [Vibrio vulnificus YJ016]
          Length = 486

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 132/389 (33%), Gaps = 38/389 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +     IPV     V  A   LA   R R     IA+ G+ GKTTT  ++T   S 
Sbjct: 96  PEVKAAREARIPV-----VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSE 146

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +                  +   G   + ++   E       ++P + ++T I
Sbjct: 147 AGLDPTFVNGGLVK--------SAGTNARLGSSRILIAEADESDASFLHLQPMVCIVTNI 198

Query: 193 APAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +     +    L   G   +  DD     L  +      + + ++G
Sbjct: 199 EADHMDTYGGDFETLKQTFIDFLHNLPFYGQAIVCIDDPVIRELIPRI----SRQVITYG 254

Query: 252 KSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  + Q   +  +  V+   +++++  +  G H A N    + + +      
Sbjct: 255 FSEDADVRIENYHQEGQQGKFTVVRKDCEALDITLNIPGRHNALNAAAAIAVATEDEIGD 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D  + A+        R +            ++ + Y  +P  +   I      + +G   
Sbjct: 315 DAILAAMIGTQGTGRRFEHLGEFETGNGNVMLVDDYGHHPTEVDVTIHA----ARNGWQD 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALKDALPRS 421
           +  V+         ++  + D A VL   ++     V+ +G          +L   +   
Sbjct: 371 KRLVMIFQPHRYSRTRDLYDDFANVLEQVDVLVMLDVYAAGEKAIAGADSRSLCRTIRSR 430

Query: 422 IHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             +   +      L   + + L +GD+++
Sbjct: 431 GKIDPIFVADTQQLPEVLANILQEGDLLL 459


>gi|238784568|ref|ZP_04628575.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
 gi|238714534|gb|EEQ06539.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia bercovieri ATCC
           43970]
          Length = 491

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 139/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A +      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATVKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        + +   +   L   D+++V+ 
Sbjct: 414 ETPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNSDDLILVQG 464


>gi|213965279|ref|ZP_03393476.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
 gi|213952131|gb|EEB63516.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium amycolatum
           SK46]
          Length = 497

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 139/428 (32%), Gaps = 54/428 (12%)

Query: 67  LVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            VV++          +A    L IPV    DVL  L +          +  + I G+ GK
Sbjct: 84  AVVISFAAIPKTNPELAGAHELDIPVLKRSDVLALLMQ---------DSKALLIAGTHGK 134

Query: 120 TTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T+T  M   AL +        +G   +  GV           D  + E   S    + + 
Sbjct: 135 TSTTSMTVAALQAAGLDPSFAVGGLMSKAGV----NAHQGSGDVFVAEADESDASLLTY- 189

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +P +AVIT I P HL  F   E   +      E ++  G + +  +D     L  +
Sbjct: 190 ----QPEVAVITNIEPDHLDFFGDDETYYAVFDAFAERIKDGGHLVVCAEDPHAAALGER 245

Query: 239 SHALGIKTIYSFGKSKNADF-------QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
           +   GI  +   G+   A          L  W      + +E  +   S+    H  G H
Sbjct: 246 AVERGINVLAYGGEDALAKHPTLPVGAVLHGWTPVGGGARVEATVGSTSVRFELHQPGRH 305

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNAN 349
           MA N L  +     + AD+    + L  F     R   +       F    + D+  +  
Sbjct: 306 MALNALAAMVGGDCVGADLGRMARGLGEFTGVRRRFDYHGSIGEGPFVGARIYDDYAHHP 365

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
                   +    ++  G G  IAV      +   +++F  + A   +L       L   
Sbjct: 366 TEVSAVLGAARELVTEAGRGNVIAVFQP--HLYSRTRNFADEFA--AALSLADKAVLLDV 421

Query: 408 ---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF- 457
                    G     + + +  +I V Y      +   ++      DV++   + S    
Sbjct: 422 FGAREEPLPGVDGALIANKM--TIPVTYEPHFTSVPARVREIAEPHDVILTIGAGSVTML 479

Query: 458 -YRLINLL 464
              ++  L
Sbjct: 480 ADEIVREL 487


>gi|77166311|ref|YP_344836.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani ATCC
           19707]
 gi|109892714|sp|Q3J790|MURC_NITOC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|76884625|gb|ABA59306.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrosococcus oceani ATCC
           19707]
          Length = 476

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 139/413 (33%), Gaps = 42/413 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD     V+ G  +VVV++ +      +S     +  V      L +L           
Sbjct: 67  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFRYG----- 118

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IA+ G+ GKTTT  ++   L         +     +    +         ++ + E   
Sbjct: 119 -IAVAGTHGKTTTTSLIAGILGEANLDPTFVIGGQVNS---IGANSRLGKGEYLVAEADE 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S          L++P +AVIT +   H+  +      + +A  E    L   G   +  D
Sbjct: 175 S-----DASFLLLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLD 229

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH 286
           D     L         + + ++G  K AD+ LR+ KQ   Q+  +     +   + VV +
Sbjct: 230 DPVLRELLP----GIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLN 285

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  + +   L        + L  F     R + Y          L+ + Y
Sbjct: 286 LPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLVDDY 345

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P  + A +  +    P        V+         ++    +   VLS  ++  +  
Sbjct: 346 GHHPRELAATLEAIRAGWPER----RLVVIFQPHRYTRTRDLFEEFIRVLSQVDVLLLLE 401

Query: 407 S---------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     G    AL  A+     V     E  + +   +   L +GD+++
Sbjct: 402 VYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEMLFDLLQEGDLLL 454


>gi|304396564|ref|ZP_07378445.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
 gi|304356073|gb|EFM20439.1| UDP-N-acetylmuramate/alanine ligase [Pantoea sp. aB]
          Length = 492

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 118/400 (29%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPELVAAREQRIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                  +  + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD+    L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDAVIRDLLPRV----GRHITT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM------------- 296
           +G S +AD ++  ++Q   Q    +  Q K+   +                         
Sbjct: 250 YGFSDDADLRIENYEQSGAQGHFTLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGI 309

Query: 297 -LMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +               +       P  G+        + G      ++      + 
Sbjct: 310 EDNAILAALESFQGTGRRFDLLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                ++    PH   R   +  D   +       H+D+  +L +Y+     + G    +
Sbjct: 370 WPDKKLVMVFQPHRYSRTRDLFDDFANVLS-----HVDVLLMLDVYSAGETAIPGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L  A+     V        D L   +   L   D+++V+ 
Sbjct: 425 LCRAIRNRGKVDPILVPEHDALPEMLAPLLSGNDLILVQG 464


>gi|254253334|ref|ZP_04946652.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
 gi|124895943|gb|EAY69823.1| UDP-N-acetylmuramate [Burkholderia dolosa AUO158]
          Length = 465

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 89/410 (21%), Positives = 143/410 (34%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD    A   GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAANIA---GANAVVVSTAVRSDNPEVLAARHQRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY              + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHV------LALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G          AL  AL  +  V   +  T+D +   +     +GDVV
Sbjct: 393 AAGEAAIVTANGDALSRALRAAGKVEPVFVATVDEVPGALAQVARNGDVV 442


>gi|302339378|ref|YP_003804584.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301636563|gb|ADK81990.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 459

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/386 (15%), Positives = 120/386 (31%), Gaps = 35/386 (9%)

Query: 86  FGVDDV--------LGALNKL---AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
             V +         L A  ++          +   IIA+TGS GK+T    +  A+  ++
Sbjct: 77  IVVKNPAVPASSPYLKAAARVESDISIFLRHNNRPIIAVTGSKGKSTVVSAMFHAI-QLR 135

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
              A +G       +              I EL  S          L++P +++IT I  
Sbjct: 136 YPEARLGGNITVSPLTFIDECRAESAAPVILEL-SSWQLADLRGKRLLKPAVSLITNIMH 194

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            H +++  +E   + K  I+    K     +N DD +     +++ A  I      G ++
Sbjct: 195 DHQNSYDSMEAYVADKKIIYADQTKEAYTVINGDDPWSAEFASETPAKSIPFFRDEGSAR 254

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                L +        + +   + + +       G H   N+L    ++ +         
Sbjct: 255 GISAWLAED---GSGWYRDASGEEEILPAHIAICGEHNRLNLLSAALVLKLFGTAGSDVK 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           + L+ F     R         +      ++S +  P +   A+   S       G     
Sbjct: 312 QRLADFRGIPHRL---ELLTEKRQVRWYNDSASTIPEATAVAVKSFSAPLILITG----- 363

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVH-YSETMDG 432
                  G         L    ++     + L G     + D L  R++       ++  
Sbjct: 364 -------GTDKNIDFSPLESYAAVPK-KMILLEGSASDKMADILESRNLPFSGPFASLKE 415

Query: 433 LFLFIQSSLVDGDVVVVK-SSNSCGF 457
                +     GD+V+    + S G 
Sbjct: 416 AVQCAEKEASPGDIVLFSPGATSFGM 441


>gi|154174953|ref|YP_001407915.1| ferrochelatase [Campylobacter curvus 525.92]
 gi|112803407|gb|EAU00751.1| ferrochelatase (Protoheme ferro-lyase) (Hemesynthetase)
           [Campylobacter curvus 525.92]
          Length = 327

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI-KGPHYDGHDFILHAVQK 63
            T  +L + I G ++       +   + +++++    AFFA+  G + D    +  AV+ 
Sbjct: 1   MTIENLARLINGQTLNKPSVSSITDFAFEAKNVRQGYAFFALDAGEN-D----VDLAVKH 55

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  V+   +         I    V  V  A+ +L             A+  + 
Sbjct: 56  GAYAVIGEEEFTPK--DSEIAYIKVSSVQTAIMRLMRFEATHKNLKFCAVNAAQ 107


>gi|56696080|ref|YP_166434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ruegeria
           pomeroyi DSS-3]
 gi|62900661|sp|Q5LU71|MURD_SILPO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56677817|gb|AAV94483.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruegeria pomeroyi
           DSS-3]
          Length = 466

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/379 (17%), Positives = 116/379 (30%), Gaps = 29/379 (7%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIAL 130
            +VA+     +PV   +D+       A            ++A+TGS GK+TT  ++   L
Sbjct: 85  PVVAAALEAGVPV--DNDIGLFFRSFAGPEWDGFDTLPRVVAVTGSNGKSTTSALIHHIL 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S   +          +IG  +       +    + EL        R LT    P +AV T
Sbjct: 143 SEAGR----PVQLAGNIGRGVLDIEPGEEGSVVVLELSSYQTDLARALT----PDVAVFT 194

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++P HL    G+    +AK  +F        +    +     L    S   G   +   
Sbjct: 195 NLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDESEGLYLAGQMSEGPGDDRVIRV 254

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             S+       +            + +      +    G   A N        +   A  
Sbjct: 255 SVSRKLTGPGWQVFARKGYLSEYRKGRQAGSIDLRDIRGLPGAHNHQNACAAYAACRALG 314

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
            +     +      G   R +     G  T +++S   N  +   A+    +I     G 
Sbjct: 315 LSPKAIEAGMRSYPGLPHRSQIVAEAGGVTYVNDSKATNVDAALKALGAFKRIRWICGGL 374

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
           +        E G  +   +  LAEVL        ++ G        AL   +      TM
Sbjct: 375 Q-------KEGGIAA--LNGGLAEVLKA------YVIGREAAGF--ALQLEVESEVCTTM 417

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           D       +    GD V++
Sbjct: 418 DEAVARAMAEAEPGDTVLL 436


>gi|27381715|ref|NP_773244.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium japonicum USDA 110]
 gi|62900585|sp|Q89FU5|MURD_BRAJA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|27354884|dbj|BAC51869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium
           japonicum USDA 110]
          Length = 466

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 113/378 (29%), Gaps = 43/378 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  +AITG+ GK+TT  ++                   +IG  +     P     
Sbjct: 109 RHAPDAPFVAITGTNGKSTTTALIAHLTKVAGYDTQMG----GNIGTAILSLEPPRTGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  ++  H+     I   A+ K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LTPSLDPSVGILLNVSEDHIDRHGTIAHYAAVKERLVAGVQAGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD +   +  +    G   +    K+  A     +      ++    + +   + 
Sbjct: 221 SIVGVDDGYCRDIADRLDRAGKNVVRISVKNPLASGIHVEHGTIV-RTAGGARSEVAKLG 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G H AQN          +    D     L  F     R         +G    +
Sbjct: 280 GIGSLRGLHNAQNAACAAAAALAMGISQDVLQDGLRSFPGLAHRM---EQVGRRGNVLFV 336

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+S  + I     G+  A  G +  +                   I 
Sbjct: 337 NDSKGTNADATAHALSSFADIFWIAGGKPKA--GGITSLTGFFPR-------------IR 381

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD----GDVVVV---KSS--- 452
             +L G         L   +    S+T+D                  VV++    +S   
Sbjct: 382 KAYLIGEAAQEFSGTLGTQVAHEISQTLDVAVEHAARDAEASGLTDAVVLLSPACASFDQ 441

Query: 453 ------NSCGFYRLINLL 464
                     F  L+  L
Sbjct: 442 YRNFEIRGTKFRELVQAL 459


>gi|50122739|ref|YP_051906.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium atrosepticum SCRI1043]
 gi|60390382|sp|Q6D0I1|MURD_ERWCT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49613265|emb|CAG76716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 438

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALQL-LEHPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTTSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLHIYEHADLC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V  +   
Sbjct: 210 VVNADDALTMPVRGADARCRSFGV------------DVGDYHLNRQQGETWLRVDGERVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + A  +    
Sbjct: 258 NTREIKLVGQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRF---QMAFERNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+S L+      +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALSGLAV-----DGTLHLLLGGDGKSADFSP-----LVPYLQGER 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGQQLA-ALRPEI-AEQTETMEQAMRVIAERIRPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|254435723|ref|ZP_05049230.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
 gi|207088834|gb|EDZ66106.1| UDP-N-acetylmuramate--alanine ligase [Nitrosococcus oceani AFC27]
          Length = 464

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 139/413 (33%), Gaps = 42/413 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD     V+ G  +VVV++ +      +S     +  V      L +L           
Sbjct: 55  GHD--PQHVE-GCDVVVVSSAIDEDNTEVSAARGRLIPVVPRAEMLAELMRFRYG----- 106

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IA+ G+ GKTTT  ++   L         +     +    +         ++ + E   
Sbjct: 107 -IAVAGTHGKTTTTSLIAGILGEANLDPTFVIGGQVNS---IGANSRLGKGEYLVAEADE 162

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S          L++P +AVIT +   H+  +      + +A  E    L   G   +  D
Sbjct: 163 S-----DASFLLLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH 286
           D     L         + + ++G  K AD+ LR+ KQ   Q+  +     +   + VV +
Sbjct: 218 DPVLRELLP----GIGRPVLTYGTCKEADYHLRELKQTQGQTQFQVARPGKDNWLTVVLN 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  + +   L        + L  F     R + Y          L+ + Y
Sbjct: 274 LPGAHNALNALAAIAVAHELGIADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLVDDY 333

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P  + A +  +    P        V+         ++    +   VLS  ++  +  
Sbjct: 334 GHHPRELAATLEAIRAGWPER----RLVVIFQPHRYTRTRDLFEEFIRVLSQVDVLLLLE 389

Query: 407 S---------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     G    AL  A+     V     E  + +   +   L +GD+++
Sbjct: 390 VYPAGEAPIGGADSRALWQAIQTHGQVSPILVEDKEIIGEMLFDLLQEGDLLL 442


>gi|254238926|ref|ZP_04932249.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126170857|gb|EAZ56368.1| UDP-N-acetylmuramate-alanine ligase [Pseudomonas aeruginosa C3719]
          Length = 480

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 72/425 (16%), Positives = 142/425 (33%), Gaps = 53/425 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNT-----DMVASIGSLSIPVFGVDDVLGALN 96
            F   +  + DG D           LVV +        VAS     IPV         + 
Sbjct: 63  IFIGHQAENADGAD----------VLVVSSAINRANPEVASALERRIPVV----PRAEM- 107

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA   R R     IA+ G+ GKTTT  +++   ++       +     +          
Sbjct: 108 -LAELMRYRHG---IAVAGTHGKTTTTSLISSVFAAGGLDPTFVIGGRLN---AAGTNAQ 160

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
                + + E   S    +      ++P +AV+T I   H++ +     ++     E   
Sbjct: 161 LGASRYLVAEADESDASFLH-----LQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLH 215

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            L   G   +  DD     +  +     +    ++G S++AD +    +Q   ++W  V 
Sbjct: 216 NLPFYGLAVMCVDDPVVREILPQIARPTV----TYGLSEDADVRAINIRQEGMRTWFTVL 271

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              +    V   +         +  + I +      +  ++ LS F     R + Y    
Sbjct: 272 RPEREPLDVSVNMPGLHNVLNSLATIVIATDEGISDEAIVQGLSGFQGVGRRFQVYGELQ 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G   ++ + Y  +P  + A I  +    P        V+         ++  + D  +
Sbjct: 332 VEGGSVMLVDDYGHHPREVAAVIKAIRGGWPER----RLVMVYQPHRYTRTRDLYEDFVQ 387

Query: 395 VLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVD 443
           VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L  
Sbjct: 388 VLGEANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGQLDPIYFERDADLAPLVKPLLRA 447

Query: 444 GDVVV 448
           GD+++
Sbjct: 448 GDILL 452


>gi|189423741|ref|YP_001950918.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
 gi|226711913|sp|B3E3Y4|MURD_GEOLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189420000|gb|ACD94398.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Geobacter lovleyi
           SZ]
          Length = 446

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 90/289 (31%), Gaps = 27/289 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+    L  I       RP +A +  I   HL  +   +   +AK  IFE     
Sbjct: 158 ERAVAEISSFQLEWIS----SFRPKVAALLNITEDHLDRYPSYQAYINAKLRIFENQTAD 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N DD           A        F  S+  +     + +  E  +     +   
Sbjct: 214 DFAVVNRDDELV------WQAAQSLKAQLFPFSRRHELTEGIFSREGELLFRHHGQELSI 267

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N++  L    +L    +T+++ L+ F     R              
Sbjct: 268 PTAGFRLQGVHNLENIMAALACCLLLGCQRETSLELLNRFEALHHRM---EFVREVADVR 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S+  A+     I+                 G+     +  LAE++    
Sbjct: 325 YFEDSKATNVGSVAKALESFENITLIAG-------------GKDKGGSYAPLAELVQQR- 370

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + H+ L G     ++  L      H + T++            G VV++
Sbjct: 371 VRHLVLIGEAAERMQQELGDLTATHKAATLEEAVQLSADLTAPGGVVLL 419


>gi|291523761|emb|CBK89348.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium rectale DSM
           17629]
          Length = 459

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A+  +  IP+          L ++            IA+ G+ GKTTT 
Sbjct: 76  TAAIHESNPEFAAAKAAGIPML----TRAELLGQIMDNYDYS-----IAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L + +       + +    +      + V       E  +S   E        R
Sbjct: 127 SMISEILLAAQTD----PTISVGGILSSIHGNLRVGD----SEYFISEACEYTNSFLNFR 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  ++I  I   HL  F  I +I  +  E        G   +N +   +E + A      
Sbjct: 179 PRYSIILNIEAEHLDFFKDINDIRHSFREYASNTLAGGATIINGEIDSYEEIVA----GL 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            + I ++G     DF         +   S+  ++      +V     G H   N L  + 
Sbjct: 235 PQKIITYGFDSKYDFYPENITYDDKACASFTAMRQGSPLFDVKLSVPGAHNVSNALAAIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           + + L  D ++ +  L  F   + R +             I + Y  +P  ++A ++   
Sbjct: 295 LSTTLGLDEESILTGLDKFGGADRRFQYKGKVNG----VTIIDDYAHHPTEIRATLTAAQ 350

Query: 362 ---------QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A L D  ++  ++    +         N       G    
Sbjct: 351 KYPHDRLVLCFQPHTYSRTKAFLNDFADVLSMADVVVLADIYAAREQN-----TYGISSK 405

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL---LLEE 467
            + D L  + ++ HY  + + +  F+  + V+GD +++      G   ++ +   LL++
Sbjct: 406 DILDLLLEKGVNAHYFPSFEEIEKFLSENCVNGD-LLIT----MGAGNVVEIGEDLLKK 459


>gi|82703611|ref|YP_413177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
 gi|122063250|sp|Q2Y636|MURD_NITMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|82411676|gb|ABB75785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrosospira
           multiformis ATCC 25196]
          Length = 473

 Score = 56.0 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 106/343 (30%), Gaps = 28/343 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFE 166
             ++ ITGS GKTT   M    L          G+     +   +            + E
Sbjct: 113 PKLVGITGSNGKTTVTAMTGAMLKKAGWDVEVAGNIGPAVLDALMRREDTGKMPQAWVLE 172

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L   + L        A +  ++  HL  ++G++E A+AKA IF G  +   I   
Sbjct: 173 LSSFQLETTKSLGLDA----AAVLNVSEDHLDRYAGMQEYAAAKARIFLGDSEGVQILNG 228

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D         +   L  +   +F  +           +    +W+              
Sbjct: 229 DDP------VVRQMTLAGRPHVTFSLATPQSADDFGLLREGGDTWLMQGDTRLMDARELA 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +   L    +  ++AL  F     R             T  D+S 
Sbjct: 283 ITGRHNCANALAALALCRALAVPFEPLLQALREFRGLPHRV---EKVAAFSGITFYDDSK 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+  L Q      G            G+        LA  +  +    V L
Sbjct: 340 GTNVGATVAALKGLGQPVVLIAG------------GDGKAQNFSPLAAPIGEHG-RAVVL 386

Query: 407 SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            G     +  A+    + +H ++TM+           +GD V+
Sbjct: 387 IGRDAEKIAVAINECGVPLHRAQTMEEAVRKSFQLAREGDAVL 429


>gi|328955355|ref|YP_004372688.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
 gi|328455679|gb|AEB06873.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Coriobacterium
           glomerans PW2]
          Length = 470

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 120/392 (30%), Gaps = 41/392 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + +   A RL  +   IA+TG+ GKTTT  +    LS+ +     +G+        ++
Sbjct: 96  EIMGEPEFAWRLSPE-RWIAVTGTNGKTTTVSLTGQLLSAARIPCEVVGNIGE---TAIS 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 D D+ + EL    L           P  AV+  I P HL    G E  A AK +
Sbjct: 152 QVDRRQDGDWFVAELSSYQLATTSEFH----PRAAVLLNITPDHLRWHRGFENYARAKLK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I + L++     ++ DD     L ++  A          +  + D              +
Sbjct: 208 ILQNLDENDLAIIDVDDPGLRRLGSQVIAS----HRRILRLAHDDPASVDAAFVRAGRLV 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                 +        +    A N+   L   +       +                R   
Sbjct: 264 VRLDGIEHDLARVSELAVAGAHNVSNALAASASALLAGASDAAVSEGLRAFSSLEHRMEP 323

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           A +       ++S   N  +++ A++           R I +LG      +     H   
Sbjct: 324 AGDIDGVRFYNDSKATNTDAVEKALTAF------PGDRVILLLGG----YDKGTPLHGFA 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDGDVV 447
             V+       V   G       DA+  +     + V  ++ +       +S    GDV+
Sbjct: 374 TRVVQQIG--AVVCFGQARRRFMDAMTGAASGLDVDVAEADDLLDAVDVARSLACRGDVI 431

Query: 448 VV---KSS---------NSCGFYRLINLLLEE 467
           ++    SS             F   ++ L   
Sbjct: 432 LLSPACSSFDEFQDFEERGRRFKAYLDELRAR 463


>gi|322691437|ref|YP_004221007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
 gi|320456293|dbj|BAJ66915.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. longum JCM 1217]
          Length = 517

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 123/429 (28%), Gaps = 46/429 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFIL 58
           L + IQG      P           GI+ D+R +         KG  +     +G   I 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFKAEYLNG---ID 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
            A   G    V  T+  A+      P   V+D   A++ L+ A     +++ T+I +TG+
Sbjct: 73  EA---GLAAYVAETEYSAATA---APGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGT 126

Query: 117 VGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            GKTTT       ++                         +      +   RM  +    
Sbjct: 127 KGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 164 IFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
             E   + +S         + +   +A    I+P H+S       E+    K +I    +
Sbjct: 187 GMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAK 246

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  +          A +             +      +  W   +  +   +    
Sbjct: 247 SLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++   H  I              ++           AL         G+  +    Q  
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDADALHAIESVRIAGRMEQFRDPQSN 366

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  N AS+ A +  + +       R   V G     G  +     ++ E    
Sbjct: 367 TLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAEN 422

Query: 399 YNISHVWLS 407
              + ++ +
Sbjct: 423 RIANFIFTA 431


>gi|114773353|ref|ZP_01450557.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
 gi|114546287|gb|EAU49198.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium HTCC2255]
          Length = 468

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/368 (16%), Positives = 104/368 (28%), Gaps = 27/368 (7%)

Query: 85  VFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           V   +DV       A            +I +TGS GK+TT  ++   L    +       
Sbjct: 95  VVVDNDVGLFFRSFATQEWDNFDVMPKVICVTGSNGKSTTTALIAHLLEGSNRKV----V 150

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
              +IG  +       D    + EL    +   R L     P IAV   ++P HL   +G
Sbjct: 151 VAGNIGRGVLDIPPAQDGTIVVLELSSYQIDLARALA----PDIAVFINLSPDHLDRHNG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDS-FFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
           +     AK  +F        I    +    F   + +  A   + + S   +        
Sbjct: 207 MGGYFYAKRRLFIDGNPDRAIIGVDEIEGQFLENQLRQDAKSGEPVISVSVNSKLQNNGW 266

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                        + +  +   +    G     N        ++  +            +
Sbjct: 267 SVFSRKGFLAEWRKGRQVASIDLRSMSGLPGEHNHQNACCAYAVCRSIGLAPKLIEEKLN 326

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
              G   R +          +++S   N  + K A+     I          V G+  E 
Sbjct: 327 SYVGLTHRCQTVGTFNGVMYVNDSKATNVDAAKKALLAFKSI-------LWIVGGESKEA 379

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G L    +           I   +L G  V  L   L  SI    + ++           
Sbjct: 380 GVLPLKPYF--------NRIKKAYLIGTDVSDLIKDLS-SIDFVIAGSISEAVRLASLDA 430

Query: 442 VDGDVVVV 449
              DVV++
Sbjct: 431 EKNDVVLL 438


>gi|302550798|ref|ZP_07303140.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
 gi|302468416|gb|EFL31509.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           viridochromogenes DSM 40736]
          Length = 475

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 131/415 (31%), Gaps = 51/415 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +  + A+     +PV+G  DV     +LA   R    A  +A+TG+ GKTTT +ML   L
Sbjct: 86  DKPLFAAADRAGVPVWG--DV-----ELAWRLRGPDAAPWLAVTGTNGKTTTVQMLASIL 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           ++         +   +IGV L  A +  +  D    EL    L         +R H A +
Sbjct: 139 TAAGLR----TAAVGNIGVSLLDAVLGEEPYDVLAVELSSYQLHWA----PSLRAHSAAV 190

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +AP HL     +E  A+ K  I+EG        +  D +  +L++      G + I  
Sbjct: 191 LNLAPDHLDWHGSMEAYAADKGRIYEGNRVACVYNV-ADKATEDLVREADVEEGCRAIGF 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              +              +++++E + +          +      N+   L   ++  A 
Sbjct: 250 TLGTPAPSQLGIVEGILVDRAFVENRQKNAQELAEVADVDPPAPHNIANALAAAALARAF 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              A               R     +      +D+S   N  + +A+++    I     G
Sbjct: 310 GVPAQAVRDGLRAFTPDAHRIAHVADVDGVAYVDDSKATNTHAAEASLAAYESIVWIAGG 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                       G          A  L         L G     +++AL R         
Sbjct: 370 ---------LAKGATFDELVAKSAPRLRGA-----VLIGADRELIREALARHAPEVPVVD 415

Query: 430 MD--------GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +D              +     GD V++    +S             F   +  L
Sbjct: 416 LDRTDTGAMRAAVQEARRLARTGDTVLLAPACASMDMFANYNKRGDAFADAVREL 470


>gi|237729386|ref|ZP_04559867.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
 gi|226909115|gb|EEH95033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           sp. 30_2]
          Length = 438

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 134/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDDERE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPIRGADERCVSFGI------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +  LN     
Sbjct: 258 NVKEMTLTGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P      ++ETM+     +   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAQLAALRPEV--AEHTETMEQAMRLLAPRVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDVFTRLAKEL 437


>gi|325571375|ref|ZP_08146875.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
 gi|325155851|gb|EGC68047.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Enterococcus
           casseliflavus ATCC 12755]
          Length = 452

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I      +RP IAVIT I  AH+       E   AK  + + +   
Sbjct: 164 DRLVMELSSFQLMGID----TLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTAD 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N++    E L AK          S  K      + +          +  + +   
Sbjct: 220 DYLVINWNQPELEALSAK----------SKAKIIPFSTKEKVAGAYMLDGMLYYKEEAIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   +AL  F     R    +         
Sbjct: 270 AAEELGVPGAHNIENALAAIAVGKLCNMPNEAIKQALQTFTGVPHRT---QYVTTINQVK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+          +  ++ +L    + G            V +L  
Sbjct: 327 FFNDSKATNILATEMAL-------GGFDNEKLVLLAGGLDRGNSFDEL------VPALKG 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + + G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 374 LKAIVVFGETKEKLASAAQAAGVKTIEMTDNVETAVPVAFSLSAAGDTILL 424


>gi|116873466|ref|YP_850247.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116742344|emb|CAK21468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 455

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 96/320 (30%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +     
Sbjct: 163 QYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTAD 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N+D    + L  ++ A  I    +         Q        +   +    +   
Sbjct: 219 DFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGDIMFDDEVIG 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N+L ++ +   L    +  +  L  F   E R    +  +      
Sbjct: 270 SRDSILLPGEHNLENILASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + ++A+           G            G    +   +L       N
Sbjct: 327 FYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK--N 372

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +  + + G     +        I VHY + ++            GD++++    +S    
Sbjct: 373 VKSLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESEPGDIILLSPACASWDQY 432

Query: 453 -----NSCG-FYRLINLLLE 466
                        +  L+ E
Sbjct: 433 RTFEVRGNAYMDAISELIEE 452


>gi|67459429|ref|YP_247053.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536156|sp|Q4UKN9|MURC_RICFE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|67004962|gb|AAY61888.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia felis URRWXCal2]
          Length = 478

 Score = 55.6 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 122/401 (30%), Gaps = 44/401 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +       IP+        A   LA   RL+     +A++GS GKTTT  +
Sbjct: 80  SAINSNNPEIKEALERKIPII-----RRA-EMLAELMRLKCS---VAVSGSHGKTTTTSL 130

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +     +       I     +     +        ++ I E   S           +   
Sbjct: 131 VACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEADES-----DATFIHIPST 182

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA+IT I P HL  +   E +  A       L   G      D      L        I 
Sbjct: 183 IAIITNIDPEHLDYYKDFETLIGAFKSFITNLPFYGFAVCCIDHKIVRKLVDDITERKIV 242

Query: 246 TIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           T     +  +                 + S   V       ++     G H   N L  +
Sbjct: 243 TYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPTPGRHNILNSLAAI 302

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L   +       + F   + R       + +    ++ + Y  +P  +KA ++  
Sbjct: 303 AVGIELDFGIKAIKNGFNNFKGVKRRFT----KVAEYNKAVVIDDYAHHPEEIKATLATA 358

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFH--IDLAEVLSLYN---ISHVWLSGFH----- 410
             I+    G+ IA+     +    S+  H   D     +  +   I+ ++ +G       
Sbjct: 359 KNIADKQNGKVIAIF----QPHRYSRMQHLFDDFMLCFNDADMIYITDIYAAGEEPIEGI 414

Query: 411 -VLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
               L + + ++ H    ++   +D     I  +   GD++
Sbjct: 415 TSQNLVNKITKNKHHDQANFLAELDDAVEVIIDNASSGDMI 455


>gi|332160410|ref|YP_004296987.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607129|emb|CBY28627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664640|gb|ADZ41284.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330859323|emb|CBX69670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica W22703]
          Length = 444

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 125/377 (33%), Gaps = 46/377 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV 160
               ++A ++AITGS GK+T   ++     +        G+       +   L+    + 
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQLSLQKHEN 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L      T  +R   A I  +   H   +  G+++  +AK  I+E  + 
Sbjct: 159 QLVVLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRIYENAKV 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +                      SFG     D       +   + W+ V+ +  
Sbjct: 215 CVVNADDALTMPVR--------GADNRCISFG----VDVGDYHLNKQQGEIWLRVRGEKV 262

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++KAL+ F     R    +        
Sbjct: 263 LNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRF---QLVFEHNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----PVDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +I  ++  G     L +  P    +   ETM+   + +  SL  GD+V++    +S    
Sbjct: 370 HI-KIYCFGRDGEQLAELRPEVSQLT--ETMEQAMVLLAKSLAPGDMVLLSPACASLDQF 426

Query: 453 -----NSCGFYRLINLL 464
                    F RL   L
Sbjct: 427 RSFEQRGDEFARLAEEL 443


>gi|226323567|ref|ZP_03799085.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
 gi|225208251|gb|EEG90605.1| hypothetical protein COPCOM_01342 [Coprococcus comes ATCC 27758]
          Length = 470

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 124/363 (34%), Gaps = 30/363 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T +AI+G+ GKTTT  ML+    +                V   
Sbjct: 112 ELLGQLMTNY-----KTPVAISGTHGKTTTTSMLSHIALAANLDPTIS--------VGGI 158

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  +  ++  G  +L ++   E         P I +I  +   HL  F  +++I ++   
Sbjct: 159 LKAIEGNIRVGGPDLFITEACEYTNSFLHFSPKIGIILNVDADHLDFFKDLDDIRNSFHL 218

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
             + L + GT+ +N D    E +     +     + +FGK  + D+         +   S
Sbjct: 219 FAKLLPENGTLVINGDIDKIEEI----TSDLSCRVITFGKEASLDYSAANITYNEQGNAS 274

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  V+       +     G H   N L  + +  IL    +T    L+ FH  + R +  
Sbjct: 275 FDVVKDGQNVAHLALAVGGEHNVYNALAAIAVADILGVPAETIQTGLASFHGTDRRFEYK 334

Query: 331 RCALNQGFFTLIDE-----SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                              +     A+      +     PH   R  A+  +  E   L+
Sbjct: 335 GEVGGVTIIDDYAHHPTEIAATLKSAAHYPHKKLWCIFQPHTYTRTKALFSEFAE--ALA 392

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
            + H+ LA++ +      +   G     L DA+        Y  +   +  F+ +    G
Sbjct: 393 HADHVILADIYAARETDTL---GISSTQLADAVKEHGCDATYLPSFAAIEEFVTTHCQPG 449

Query: 445 DVV 447
           D++
Sbjct: 450 DLL 452


>gi|219684279|ref|ZP_03539223.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
 gi|219672268|gb|EED29321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia garinii
           PBr]
          Length = 451

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/452 (14%), Positives = 137/452 (30%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTDMVAS-----------------------IGSLSIPVFGVDDV----LG 93
           ++ GA LV+ +    A                        I         V +       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 94  ALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L   L          G+    
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKKYPRAKLGGNIGIS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P +++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGRSPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I  +     +F   ++K+  +           ++  +  +    
Sbjct: 203 IIDKSKIFVNQTSGIAIIQDKAYYKYFSKFESKAKVILFSEFNPLVLDQDVFYYNKGEVY 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++            +               L+   +   L  D++   K L+ F   E 
Sbjct: 263 FNDN-----------LIGSFSESQVVFMIPKLIAFFVSYYLNMDLNHTFKILNKFRGIEH 311

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N       +++ +  P S   ++     +  +     + V G   E+   S
Sbjct: 312 RLEFVKLVQNVM---FYNDTASTIPDSTVLSVKS---LKTNDNSINLIVGGTDKELDFSS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
                   ++++L   + + + G   + +   L +S I     +++     +       G
Sbjct: 366 ------FCKIINLVK-TWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYASKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+V+   +S               F  L+N+L
Sbjct: 419 DIVLFSPASASFELFNNEFDRGLQFKNLVNML 450


>gi|323701286|ref|ZP_08112961.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533888|gb|EGB23752.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 462

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 118/380 (31%), Gaps = 43/380 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V    ++ IPV           +L +A R   +A I+AITG+ GKTTT  ++      
Sbjct: 92  PPVVQAKAMDIPVI---------GELELAYRFA-RAPIVAITGTNGKTTTTSLIGQMFRD 141

Query: 133 IKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                        +IG+P  +        D  + E+    L      T    P +AV+  
Sbjct: 142 AGYH----TLVAGNIGLPLASEVENYSRQDIIVAEVSSFQL----ETTQSFAPRVAVVLN 193

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           + P HL     + E   AK+ IF   ++     LNYDD     + A   +  +       
Sbjct: 194 VTPDHLDRHGSMAEYIRAKSLIFAHQDQEDWAVLNYDDPVTREMAADCPSQVLFFSRQHI 253

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
             K    Q  K     +       +    +   H+      A      +GI +   A   
Sbjct: 254 LEKGIYVQDGKIMVADQGVTEITPVNTLRIPGAHNLENALAAVAAGYAMGIAATDLARTL 313

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            +   ++                       I++S   NP +   A+   ++      G  
Sbjct: 314 ESFAGVAHRL---------EYVATIDGVKYINDSKGTNPDAAIKALDAYNEPIILIAG-- 362

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSET 429
                     G+   S     A  +    +  + + G H   ++ A       ++  ++ 
Sbjct: 363 ----------GKNKGSDFTQFARKIKE-KVRVLIVLGLHGYQIEAAARDQGFTNILQAQD 411

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
                         G+VV++
Sbjct: 412 YPQAVRLAHQQARPGEVVLL 431


>gi|322378729|ref|ZP_08053159.1| putative ligase [Helicobacter suis HS1]
 gi|322380012|ref|ZP_08054277.1| peptidoglycan synthesis protein [Helicobacter suis HS5]
 gi|321147564|gb|EFX42199.1| peptidoglycan synthesis protein [Helicobacter suis HS5]
 gi|321148847|gb|EFX43317.1| putative ligase [Helicobacter suis HS1]
          Length = 310

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               ++L   +G           + I+     +     F A++        ++  A++ G
Sbjct: 1   MNVDEVLSITRGTLQSNPVVHTFSHITHTIERVKKGALFIALEPS------YLDLAIKLG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           A  V+ N     +   L I    V ++  ALN+L     + S+  II ++
Sbjct: 55  AYGVLTNQK---NPSDLEIAWIYVQNLQDALNRLLYYKFMDSQIPIITLS 101


>gi|271502044|ref|YP_003335070.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
 gi|270345599|gb|ACZ78364.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech586]
          Length = 437

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGQMAHAAGWAV----GVGGNIGVPALEL-LKQESQ 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L     L        A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 153 LYVLELSSFQLETTHSLHA----AAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V+ +   
Sbjct: 209 IVNADDALTMPVRGADARCLSFGV------------DVGDYHLNRQQGETWLRVKGERVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + +L +    
Sbjct: 257 NTREIKLVGQHNYTNALAALALADAVGIPRSSALTALTTFTGLPHRF---QLSLERNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA+S L       +G    +LG   +  + S      L   L    
Sbjct: 314 WVNDSKATNVGSTEAALSGLQV-----DGTLHLLLGGDGKSADFSP-----LLRYLQGDR 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    ++TM+     I S    GD+V++    +S     
Sbjct: 364 I-RLYCFGRDGGQLA-ALRPEI-AQQTDTMEQAMRLIASRTQPGDMVLLSPACASLDQFR 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 SFEQRGDEFARLAEEL 436


>gi|225028221|ref|ZP_03717413.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
 gi|224954533|gb|EEG35742.1| hypothetical protein EUBHAL_02493 [Eubacterium hallii DSM 3353]
          Length = 466

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/408 (15%), Positives = 131/408 (32%), Gaps = 43/408 (10%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  + +  A+  +  IP+        AL  ++         A  IA+ G+ GKTTT 
Sbjct: 82  TAAIHESNEEFAAAKNKGIPMM----TRAALLGQIMANF-----AKSIAVAGTHGKTTTT 132

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            MLT  L                        R+  ++  G  +L ++   E         
Sbjct: 133 SMLTHILLQADTDPTVSVGGMLD--------RIGGNIRVGHSDLFLTEACEYTNSFLEFY 184

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P  ++I  +   H+  F  IE+I ++  +        G I +N D    + +        
Sbjct: 185 PLYSIILNVEEDHMDFFKDIEDIKNSFHKFASQTADDGLIIINGDMGHTDFIL----NGL 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +   +FG + + D+         E +     +     +             M       
Sbjct: 241 SQKHVTFGLNPDNDYTAADITFDKEGNASYNLIAHGQEKGRITLKVKGRHNVMNS--LAA 298

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI------ 357
              T  +   + A+       G   R            + + Y  +P  ++A +      
Sbjct: 299 IACTEAIGLPLDAIRKGLLSFGGTHRRFEYKGSLGDVTVIDDYAHHPTEIRATLSAAKDY 358

Query: 358 ---SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
               +     PH   R  A L +  +   L Q+ HI LA++ +   +    +S   V+ L
Sbjct: 359 PHDELWVIFQPHTYTRTKAFLPEFAK--ALEQADHIVLADIYAAREVDTGEVSSKDVMKL 416

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                    VHY  + + +  F+++ +   D +++      G   ++ 
Sbjct: 417 LQ--EDGQDVHYFPSFEEIKDFVKAHVKGHD-LLIT----MGAGNVVE 457


>gi|163855003|ref|YP_001629301.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella petrii DSM
           12804]
 gi|189028975|sp|A9I4V6|MURC_BORPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163258731|emb|CAP41030.1| UDP-N-acetylmuramate-L-alanine ligase [Bordetella petrii]
          Length = 468

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 136/411 (33%), Gaps = 42/411 (10%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GAG +V +T +      +       IPV         +  LA   RL+     IA+ G+
Sbjct: 63  AGAGAIVTSTAVAGDNPEVIAARAAGIPVV----PRAIM--LAELMRLKRG---IAVAGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L++       +      +      AR+    ++ + E   S    + 
Sbjct: 114 HGKTTTTSLVASVLAAGDLDPTFV--IGGRLTSAGANARLGQG-EYIVVEADESDASFLN 170

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L     P +A++T I   H+  +    ++A  K+   E  ++          +    ++
Sbjct: 171 LL-----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSAVLCADDANVR 223

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-----KSMEVVHHGIGYH 291
                +      ++G S +A  +    +    +    VQ Q        + +  +  G H
Sbjct: 224 EIMPFVSRPIT-TYGLSPDAHVRGENVQADGTRMRFTVQRQDRATALPPLAIELNLPGLH 282

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  + + + L    +   +AL+ F     R  +               +   +  
Sbjct: 283 NVRNALAAVAVATELGVPDEAIAQALASFKGVGRRFTQTGEFPVPAAHGGGTFTLIDDYG 342

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSG 408
                ++     +      R  VL         ++    D   V        ++ V+ +G
Sbjct: 343 HHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGGADAVLLTEVYAAG 402

Query: 409 F------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
                     AL  AL  +  +   + E +  L   +   + DGDVVVV  
Sbjct: 403 EPPLVAADGRALARALRVAGRIEPVFVEDVADLPQAVLDFVRDGDVVVVMG 453


>gi|83949453|ref|ZP_00958186.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
 gi|83837352|gb|EAP76648.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseovarius
           nubinhibens ISM]
          Length = 466

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 115/407 (28%), Gaps = 38/407 (9%)

Query: 57  ILHAVQKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARL 104
           +    ++GA     ++V +  +  +      V            +D+       A     
Sbjct: 55  VSDLSRQGAFDDIALLVTSPGIPHLYPEPNRVIAAALAAGVPVDNDIGLFFRSFAAQGFD 114

Query: 105 RSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                  ++A+TGS GK+TT  ++   LS   +          +IG  +     P D   
Sbjct: 115 EFDTPPRVVAVTGSNGKSTTSALIHHVLSEAGR----ASQLAGNIGRGVLDIDPPEDGGV 170

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL          L   + P +AV T ++P HL    G+    +AK  +F        
Sbjct: 171 VVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRA 226

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +    +     L    S       +              +            + +     
Sbjct: 227 VIGVDEAEGRFLANQLSVGPSDDRVIRISSGTKLTGPGWQVFARKGFLSEYRKGRQAGSI 286

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +    G   A N        +   A         + F    G   R +    Q   + +
Sbjct: 287 DLREIKGLPGAHNHQNACAAYAACRALGLAPRVIEAGFASFGGLPHRSQLIAEQNGVSFV 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S   A+           GR   + G + + G L+            L N+ 
Sbjct: 347 NDSKATNVDSAARALMAY--------GRIRWICGGLQKEGGLA-------GLAPGLANVV 391

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++ G    A    L          TM+            GD V++
Sbjct: 392 KAYVIGREAAAFALDLGE-TETEICTTMERAVARAMEEAEPGDCVLL 437


>gi|325523967|gb|EGD02169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia sp. TJI49]
          Length = 461

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 30/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGIGRIVTNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + + A+     ++    FG          +     ++ +    L  +  EV    
Sbjct: 222 RADALDRVLARGCWSEVER---FGVDGGWQALPAEDGVPVDECFAVYSLGQRVGEVAWQV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L+ F   + R +             + + + 
Sbjct: 279 QGEHNRMNALAAIAAARHVGVPPAQAAASLASFRNVKRRME----VRGSVNGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++    + ++ +      +   +L     +   S +  + + +     SL +   V
Sbjct: 335 HHPTAI---ETTIAGLRARIGRQNTRIL---AVLEPRSNTMKLGVMKSQLPASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL            +  L   +  +   GD V+V  SN  GF
Sbjct: 389 FGYGAPSGRDALGWNLGEALAPLGDKAQAFGDLHLLVKAVVEAARPGDQVLV-MSNG-GF 446

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 447 GGVHQKLLD 455


>gi|163741570|ref|ZP_02148961.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
 gi|161385304|gb|EDQ09682.1| UDP-N-acetylmuramate--L-alanine ligase [Phaeobacter gallaeciensis
           2.10]
          Length = 465

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 123/411 (29%), Gaps = 45/411 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           F+  A +    A +VV+++ +      L         V+     LA   RL+S    IAI
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRLKSN---IAI 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  M+   + +    +      N  I             ++ + E   S   
Sbjct: 117 AGTHGKTTTTTMMAELMVA---GHFDPTIVNGGIIHAYGSNARMGQGEWMVVEADES--- 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 + +   IAV+T I P H+ ++   + +     +    +   G      D    +
Sbjct: 171 --DGTFNRLPATIAVVTNIDPEHMEHWGDFDTLRDGFYDFVSNIPFYGVAVCCTDHPEVQ 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  +     + T     ++      L      +                     G H  
Sbjct: 229 ALVGRITDRRVVTYGFNAQADVRATNLTYKAGVAHFDIHLQAEDRVIEGCTLPMPGDHNV 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L        +AL+ F     R       + +     I + Y  +P  +
Sbjct: 289 SNALSAVAVARHLGMKSSEIREALAAFGGVNRRFT----KVGEVDGVTIIDDYGHHPVEI 344

Query: 354 K---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                         V++   PH   R  ++  D C                  +  I+ V
Sbjct: 345 TAVLKAARQACDGRVIAVHQPHRYSRLSSLFEDFCAC-----------FNEADVVAIAEV 393

Query: 405 WLSGFHV------LALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVV 447
           + +G           L   L R  H H    +D   L   ++     GD+V
Sbjct: 394 FAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMV 444


>gi|329943203|ref|ZP_08291977.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|332287783|ref|YP_004422684.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|313848356|emb|CBY17359.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila psittaci RD1]
 gi|325506725|gb|ADZ18363.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
 gi|328814750|gb|EGF84740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci Cal10]
 gi|328915041|gb|AEB55874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           psittaci 6BC]
          Length = 420

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 122/412 (29%), Gaps = 79/412 (19%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +  ++       IPV  V D+  A        R       I +TGS GKTTT   L   
Sbjct: 71  TSHPVIVEAKHRGIPV--VTDIQLAFQDP-EFHR----YPSIGVTGSAGKTTTVLFLVHL 123

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S+  +         +IG P+    +      GI  + MS          +     A I
Sbjct: 124 LRSVGISAC----AMGNIGFPI----LQAMYQKGIRVVEMSSFQLAEQEIEIPVLSAATI 175

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+  HL     ++  + AK+ I +                         +L +    S
Sbjct: 176 LNISENHLDYHYTLQAYSEAKSNIVKC-------------------LQSPESLWVGDGVS 216

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FGKS     +          +   + L  ++     + +   + +  L       +    
Sbjct: 217 FGKSYLDSTREINLVLDKGSALKPLYLHDRNNYCAGYALANEVTKIPLEAFLEAVLTFDK 276

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               I                     +     I++S     +S++ A+  + +       
Sbjct: 277 PPHRI----------------EYLGEKDGVRYINDSKATTMSSVEKALIAVKE------- 313

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I +LG     G    S    L   L+   + H+   G     +  AL   ++ +  + 
Sbjct: 314 NIIVILG-----GRNKGSNFASLIPTLTQT-VKHIVAMGECRKEIAQALSSSNLPLTQAR 367

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI---NLLL 465
            +       QS    GDV+++    +S             F +L+     L 
Sbjct: 368 DLQEAVNVAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFKQLVGEMEALK 419


>gi|296454397|ref|YP_003661540.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183828|gb|ADH00710.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 517

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 123/429 (28%), Gaps = 46/429 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKGPHY-----DGHDFIL 58
           L + IQG      P           GI+ D+R +         KG  +     +G   I 
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTQGTL-LCCKG-RFKAEYLNG---ID 72

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGS 116
            A   G    V  T+  A+      P   V+D   A++ L+ A     +++ T+I +TG+
Sbjct: 73  EA---GLAAYVAETEYSAATA---APGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGT 126

Query: 117 VGKTTTKEMLTIALS-------------SIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
            GKTTT       ++                         +      +   RM  +    
Sbjct: 127 KGKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADN 186

Query: 164 IFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
             E   + +S         + +   +A    I+P H+S       E+    K +I    +
Sbjct: 187 GMEYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANAK 246

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  +          A +             +      +  W   +  +   +    
Sbjct: 247 SLVLGADSLHADLLREDAAAAGIGATTFALHDADNAGTSADVVAWPADTAHASFHIADGD 306

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++   H  I              ++           AL         G+  +    Q  
Sbjct: 307 QTLGDYHLSIDGDFNYLNAAAAIAIAHAAGVSLDDAGALHAIESVRIAGRMEQFRDPQSN 366

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  N AS+ A +  + +       R   V G     G  +     ++ E    
Sbjct: 367 TLAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAEN 422

Query: 399 YNISHVWLS 407
              + ++ +
Sbjct: 423 RIANFIFTA 431


>gi|158522799|ref|YP_001530669.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
 gi|226711907|sp|A8ZXW5|MURD_DESOH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158511625|gb|ABW68592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfococcus
           oleovorans Hxd3]
          Length = 459

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 116/383 (30%), Gaps = 45/383 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA     +    + A+TG+ GKTT   +L   L +  +          +IG PL     
Sbjct: 103 ELAARFVTK---PVAAVTGTNGKTTVTTLLGDMLKASGRQVFVG----GNIGAPLIGFAD 155

Query: 157 P-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              + D  + E+    L          RPH+AV+  IA  HL+ +        +K  IFE
Sbjct: 156 KGENADMAVVEVSSFQLDTSE----TFRPHVAVLLNIAEDHLARYVDFNAYVRSKGRIFE 211

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             E      +N                  K I S   + NA    +      + +   V 
Sbjct: 212 NQEADDVAVING--------ADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIVT 263

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K+  +           NM           A   T     +     +G   R     +
Sbjct: 264 AGTKTATISVTSPLMRARHNMENIAAATLAALAMGATVEGIQAAVDGFQGLRHRLEYVAS 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                  D+S   NP +++ A+   +            VL     +G   +     + + 
Sbjct: 324 IDDVHYFDDSKATNPDAVRRALEFFTS---------RVVL----LLGGEDKGCDYGVLKN 370

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
           +       V L G     ++ A+  S+ +  + +M             GD V++    SS
Sbjct: 371 VIRERARAVVLFGAAKEKIRMAINGSVSLWDAGSMAEAVRRAHELAAPGDAVLLSPACSS 430

Query: 453 ---------NSCGFYRLINLLLE 466
                        F   +  L E
Sbjct: 431 FDSYESYAHRGDDFCNAVKKLKE 453


>gi|332312486|gb|EGJ25581.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. Scott A]
          Length = 461

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 167 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 222

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 223 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 273

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 274 IGARDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 331 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 377

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 378 -NVKALIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|253689955|ref|YP_003019145.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756533|gb|ACT14609.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 438

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALQL-LEQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V  +   
Sbjct: 210 VVNADDALTMPVRGADARCRSFGV------------DVGDYHLNRQQGETWLRVDGERVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + A       
Sbjct: 258 NTREIKLVGQHNYTNALAALALADAVKIPRASALTALTTFAGLPHRF---QMAFEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALSGLTV-----EGTLHLLLGGDGKSADFSP-----LVPYLQGEH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGQQLA-ALRPEI-AEQTETMEQAMRVIAERVKPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|325001450|ref|ZP_08122562.1| putative UDP-N-acetylmuramoylalanyl-D-glutamyl-
           2,6-diaminopimelate--D-alanyl-D-alanine ligase
           [Pseudonocardia sp. P1]
          Length = 45

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                +++ L  GDVV+VK+S S G  R+   LL
Sbjct: 2   AALDLLRAELAPGDVVLVKASRSAGLERIAAGLL 35


>gi|295677761|ref|YP_003606285.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437604|gb|ADG16774.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1002]
          Length = 467

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 85/416 (20%), Positives = 144/416 (34%), Gaps = 49/416 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      K I  +G + +A  +    +    +    V  +  +  +V  + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGLAADAQVRAVNVEAREGRMHFTVMREDAAPLDVTLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLI 342
            G H  QN L  + I + L        +AL+ F+    R +RY                +
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVVSDGQAAGSYTL 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  M A ++      P        VL         ++    D  +VLS  +  
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDAL 390

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            ++ V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 391 VLTEVYAAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPDALSTVVRDGDVV 446


>gi|258514340|ref|YP_003190562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778045|gb|ACV61939.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 449

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 117/384 (30%), Gaps = 47/384 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       KA ++AITG+ GKTTT  ++     +             +IG+PL     
Sbjct: 97  ELAARF---IKAPVVAITGTNGKTTTTSLIGEIFRNNGI----KTLVAGNIGLPLVTEVE 149

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D  + E+    L      T   RP++AVI  I P HL   + ++  A AKA I++
Sbjct: 150 KYGPGDIIVAEVSSFQL----ETTVHFRPNVAVILNITPDHLDRHATMQNYAQAKANIYK 205

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
               +    LNYDDS    L  K     I         +    +  +     +     + 
Sbjct: 206 QQLSSDYTVLNYDDSLTASLAVKVPGRVIFFSRKHILDRGVFVRNEEIIAALDGDETAIC 265

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +    A N+   L  V+             +      G   R      
Sbjct: 266 --------RVDEVKIPGAHNLENALASVAAGFVLGVGRQVLANTLKTFPGVEHRLEFVAE 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   NP +    +   SQ      G            G    S   +  + 
Sbjct: 318 INGVRYINDSKGTNPDAAVKGLQAYSQPIVLIAG------------GRNKGSDFKEFMQ- 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
            +   +  + + G     L +A       +V  +            +   GDVV++    
Sbjct: 365 AAKEKVRTMVVLGECAQELLEAAQAVGFGNVIQATDFISAVKLAAQTARSGDVVLLSPAC 424

Query: 451 SS---------NSCGFYRLINLLL 465
           +S             F  ++  L 
Sbjct: 425 ASWDMFKNYEERGRLFKEIVKDLR 448


>gi|319782846|ref|YP_004142322.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
 gi|317168734|gb|ADV12272.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Mesorhizobium
           ciceri biovar biserrulae WSM1271]
          Length = 466

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/438 (14%), Positives = 118/438 (26%), Gaps = 62/438 (14%)

Query: 57  ILHAVQKGA-----GLVVVNTDMVASIGSLSIPVFGVDDVL----GALNKLAVAARLR-- 105
           I  A  +GA        V++  +  +      P + V+         +  + +  R R  
Sbjct: 53  IATADLRGADWAKFSAFVLSPGVPLTHPK---PHWTVELARGSGVEIVGDIELFCRERML 109

Query: 106 --SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               A  IAITG+ GK+TT  +    L +  +          +IG  +     P      
Sbjct: 110 SAPTAPFIAITGTNGKSTTTALTAHILKAAGRDAQMG----GNIGRAVMTLDPPEPDRHY 165

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E     +     L   + P   ++  + P HL     ++  A+ K  +  G E     
Sbjct: 166 VVECSSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYAAIKERLVAGSETAIVG 221

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
             +   +       ++    I+       +           +     +  V        +
Sbjct: 222 IDDSWCAQIAERLERAGRHVIRISKRLPLTDGYFADGSNLMEAVHGRYSRVAFLEGIGSL 281

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                  +    +   L I   L           S      G   R      +     I+
Sbjct: 282 RGQHNAQNALAAVAACLKIGLELGEI-------QSGLESFPGLAHRMEQVGRKDHVLFIN 334

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +   A+S  ++I     G          E G             ++      
Sbjct: 335 DSKATNADAAAPALSSFARIYWIAGGLP-------KEGG---IEPLRGFFPRIAKA---- 380

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS---- 452
            +L G    A    L  ++    S T+              D    VV++    +S    
Sbjct: 381 -YLIGEAAPAFSATLGEAVPYEISGTLAAAVEHAAHDAAKDDSGEAVVLLSPACASFDQF 439

Query: 453 -----NSCGFYRLINLLL 465
                    F +  N + 
Sbjct: 440 KNFEVRGEAFRQAANAIE 457


>gi|15606557|ref|NP_213937.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
 gi|6919927|sp|O67373|MURC_AQUAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2983764|gb|AAC07323.1| UDP-N-acetylmuramate-alanine ligase [Aquifex aeolicus VF5]
          Length = 454

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 81/403 (20%), Positives = 150/403 (37%), Gaps = 49/403 (12%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV ++ +      +      +IPV       G +  LA   +L+     IA++GS G
Sbjct: 66  AQVVVYSSAVKPDNPEIQEAKRRNIPVI----PRGEM--LAELFKLKEG---IAVSGSHG 116

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L +       I              R+  +   G  EL +S   E    
Sbjct: 117 KTTTTSMIAEILINAGLEPTVIIGGRLK--------RLGTNAKLGRGELLVSEADESDGS 168

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              ++P +AVIT +   HL  +   E +  A  +    +   G   +N DD     L  K
Sbjct: 169 FLKLQPAVAVITNVDKEHLDFYENFERVKEAFEQFMNSVPFYGFAVVNLDDPTLAQLVKK 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNML 297
           SH      + ++G +  A  + +       +    V+ +GK    +     G H   N L
Sbjct: 229 SHE----RVITYGINSPALVRAKNLYLKEGRYEFGVEFKGKELGRIHLGIAGIHNVYNAL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
              G+   L    +   K+L  F   E R +      N   +    + Y  +P  +KA I
Sbjct: 285 AATGVALELGVSFEVIKKSLEEFRNAERRLELKGYYKNSPVY----DDYGHHPTEIKAVI 340

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFHVLA-- 413
           + L  + P         L  + +    S++++   D  +VL   +I  + ++  +  +  
Sbjct: 341 NSLRDMYPDKN------LLVVFQPHRYSRTYYLFEDFVKVLK--DIDKLIVTDIYPASEN 392

Query: 414 -----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  + L R     +++  + +F  ++    +GDV++   
Sbjct: 393 NVYGVSAEELARKSGAVFAKDKEEVFEKVREVHDEGDVILFLG 435


>gi|220931750|ref|YP_002508658.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
 gi|219993060|gb|ACL69663.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halothermothrix
           orenii H 168]
          Length = 456

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 92/293 (31%), Gaps = 26/293 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D+ + E+    L          +PHI+     +P HL     +E    AK  IFE   
Sbjct: 158 KNDWVVAEVSSFQL----ETIRDFKPHISAFLNFSPDHLDRHLSVENYWKAKKRIFEN-- 211

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +    +   +   +++LKA           S   +      L + K     +    + + 
Sbjct: 212 QMSGDYALVNYDDYKVLKAVEDCSARVFGVSLKDNIEQGIYLEEDKLIINSA---DRSEV 268

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H   N+     I  +  A  +   + +  F P     +     + +  
Sbjct: 269 VLPVESIPLKGKHNIYNIAFASLIAYLAGASTEAIKEGVYQFIP--EPHRLEEVTVLKDR 326

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID+S   NP +   A+    Q      G            G+   +   + A  +  
Sbjct: 327 VMVIDDSKATNPHAAINALKSFDQPIVLIAG------------GQDRDADFSEFAREIVS 374

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G     L + + R    +++    M+       +    GDV+++
Sbjct: 375 R-VRALILLGETKDKLAETVLRMGFNNIYKVRDMNEAVRKAIAHTEPGDVLLL 426


>gi|46908272|ref|YP_014661.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47094495|ref|ZP_00232169.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|226224642|ref|YP_002758749.1| UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes Clip81459]
 gi|254826208|ref|ZP_05231209.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|254854027|ref|ZP_05243375.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|254933464|ref|ZP_05266823.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|255520494|ref|ZP_05387731.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J1-175]
 gi|300765471|ref|ZP_07075452.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|60390485|sp|Q71XX7|MURD_LISMF RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46881543|gb|AAT04838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|47017132|gb|EAL07991.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes str. 4b H7858]
 gi|225877104|emb|CAS05816.1| Putative UDP-N-acetylmuramoylalanine D-glutamate ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607419|gb|EEW20027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL R2-503]
 gi|293585026|gb|EFF97058.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes HPB2262]
 gi|293595449|gb|EFG03210.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J1-194]
 gi|300513782|gb|EFK40848.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL N1-017]
 gi|328466096|gb|EGF37266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 1816]
 gi|328472684|gb|EGF43542.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes 220]
          Length = 455

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGARDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKALIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|262170518|ref|ZP_06038196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
 gi|261891594|gb|EEY37580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus MB-451]
          Length = 451

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 120/369 (32%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMVA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +      +     G+ +       +        +  +    +  +V    +
Sbjct: 223 DEALADVFKRGCWSETEFSGEQGEWQA------EKITADGSQFHVLLHGERVGQVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +    + A +A           KR      +     + + +  
Sbjct: 277 GDHNVSNALMAIAAARHVGVAPELACEA----LGLFVNTKRRLELKGEINGVAVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P +++  +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 333 HPTAIE--LTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLMAALQQK 451


>gi|257092207|ref|YP_003165848.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044731|gb|ACV33919.1| UDP-N-acetylmuramate/alanine ligase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 462

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 80/411 (19%), Positives = 133/411 (32%), Gaps = 41/411 (9%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           I HA     GA  VVV++ + A     ++     V  V  A   LA   RL+     IA+
Sbjct: 55  IGHAAANVNGADAVVVSSAVRADNPEVIAARSRQVPVVPRA-QMLAELMRLKQG---IAV 110

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  ++   L++       +     +              DF + E   S   
Sbjct: 111 AGTHGKTTTTSLVASILAAGGMDPTFVIGGRLN---AAGANACLGSGDFLVAEADES--- 164

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                   + P I+V+T I   H+  +                  +    +        +
Sbjct: 165 --DASFLFLSPVISVVTNIDADHMETYGHDFNRLKQAFV---EFLQRLPFYGVAVLCADD 219

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV---VHHGIGY 290
               +      K I ++G    A+F          Q   +      S+       +  G 
Sbjct: 220 ANVREIMPQVSKQIVTYGLDPAANFYAENVTAEGGQMRFDCVRVNGSVSRLPVTLNLPGR 279

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNAN 349
           H   N L  + + S +    D  +KAL+ F     R +RY   AL  G    + + Y  +
Sbjct: 280 HNVLNALAAIAVASEVGVADDAILKALTDFRGVGRRFQRYGEIALADGGCFTLVDDYGHH 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406
           P  M A ++      P        +L         ++    D  +VL    +  + L   
Sbjct: 340 PVEMSATLTAARGAFPGR----RLLLAFQPHRYTRTRDRFEDFVKVL--SGVDALVLTEV 393

Query: 407 --------SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                         AL  AL  +  V   + E++  +   I   + DGDVV
Sbjct: 394 YAASEQPIVAADGRALARALRVAGKVEPVFVESIGDVPQAILDIVRDGDVV 444


>gi|89067826|ref|ZP_01155270.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
 gi|89046424|gb|EAR52480.1| UDP-N-acetylmuramate-alanine ligase [Oceanicola granulosus
           HTCC2516]
          Length = 464

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 122/399 (30%), Gaps = 39/399 (9%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV     V  A   LA   R++S    IA+ G+ 
Sbjct: 69  GAEVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRMKSN---IAVAGTH 119

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+      +          N  I           + ++ + E   S       
Sbjct: 120 GKTTTTTMVASL---LDHGRFDPTVINGGIIHAYGSNARVGEGEWMVVEADES-----DG 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   IA++T I P H+ ++   E +     +    +   G      D    + L +
Sbjct: 172 TFNRLPATIAIVTNIDPEHMEHWGTEEALKKGFYDFVSNIPFYGLAVCCTDHPDVQGLVS 231

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     + T     ++      L   K  ++             +      G H   N L
Sbjct: 232 RITDRRVVTFGFNAQADVRAINLTYDKGVAKFDIALQGEGTVIEDCSLPMPGDHNVSNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L    D   +AL+ F     R  R            I + Y  +P  + A +
Sbjct: 292 SAVAVARHLGMKRDEIREALAAFGGVNRRFTRVGEVGG----VAIIDDYGHHPVEIAAVL 347

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHV----- 411
                     EGR IAV          S      +      +  I  V+ +G        
Sbjct: 348 KAA---RQATEGRVIAVHQPHRYSRLSSLFDQFCNCFNEADVVAIGEVYAAGEEPIPGAS 404

Query: 412 -LALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              L   L      H       D L   ++     GD+V
Sbjct: 405 RDDLVAGLIRAGHRHARAVTDEDDLERLVREQARPGDMV 443


>gi|331002502|ref|ZP_08326020.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
 gi|330410318|gb|EGG89752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           oral taxon 107 str. F0167]
          Length = 448

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 94/328 (28%), Gaps = 31/328 (9%)

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTI 192
              +        +IG+P T      D +   + E     L          +P I+ I  I
Sbjct: 127 MSDFFEKSFTVGNIGIPYTDIADKTDENSVTVLETSSFQL----ETIIDFKPKISAILNI 182

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
            P HL+    +E     K +I +  ++     LNY+D           A  +        
Sbjct: 183 TPDHLNRHHTMENYIKVKEDISKNQDENNFCILNYEDVILREFAKNVKAKVVFFSSKTKL 242

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            K          +         ++         + +G H  +N++  + I       ++ 
Sbjct: 243 DKGFYLDNDIIVKAENG-----KVSKILDTNKLNILGRHNYENVMAAIAIAESYGVPMEN 297

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +K+   FH  E R                ++S   NP +   A+  +   +    G   
Sbjct: 298 IVKSCYDFHAVEHRI---EFVKEVNGVKYYNDSKGTNPDAAIQAVLAMPSFTYIIAG--- 351

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETM 430
                    G    S + +  E      +  + L G     + D   R     +    +M
Sbjct: 352 ---------GYDKGSEYDEWIESFG-GKVKKLILMGATAKNIADCANRHGFKDIDMVNSM 401

Query: 431 DGLFLFIQSSLVDGDVVVV---KSSNSC 455
           +            G+ V++    +S   
Sbjct: 402 EEAVNICAREAKSGEYVLLSPACASWGM 429


>gi|323706228|ref|ZP_08117795.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534392|gb|EGB24176.1| UDP-N-acetylmuramate/alanine ligase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 465

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/397 (17%), Positives = 126/397 (31%), Gaps = 37/397 (9%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA LVV    +            L+IP     D    L ++            + + GS 
Sbjct: 67  GADLVVYTAAVKEDNPEMIRARELNIPTI---DRATLLGEIMKKY-----TYGVGVAGSH 118

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++++ L  +      +      I        +  +V  G  E  ++   E   
Sbjct: 119 GKTTTTSLISVLLEEMNYDPTVLVGGEVDI--------IGGNVRVGNSEYFITEACEYTD 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P+IAVI  +   HL  F  I+ I  +  +    +   G +    DD     +  
Sbjct: 171 SFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFTQFANLVPNDGFVVACGDDPNTMSVLK 230

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +      I +FG   N  +  +  K   +   S+                +G H   N
Sbjct: 231 NVNR----NIITFGLDSNCTWNAKNIKFDEKGFPSFDVYHNGTFVERFELSIVGKHNILN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES---YNANPAS 352
            L TL +  +L  D+      +  F     R +                      A  +S
Sbjct: 287 ALATLSVCHLLGVDIKKTPDIIKKFKGTHRRFEFKGTIDGAVIIDDYAHHPTEIKATLSS 346

Query: 353 M--KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                   ++    PH   R  ++L D     + +    I      +    + +  +   
Sbjct: 347 ALNYPHNRIICVFQPHTYTRTYSLLNDFAASFDDADITIITDI-YAAREKDTGIVRAEDL 405

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              +KD   R   V+Y +    +  +++ ++ +GD+V
Sbjct: 406 ANLIKD---RGNEVYYIKEFSDIVDYLKGTIKNGDLV 439


>gi|307721054|ref|YP_003892194.1| hypothetical protein Saut_1134 [Sulfurimonas autotrophica DSM
          16294]
 gi|306979147|gb|ADN09182.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
          16294]
          Length = 337

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + L    G  I        N I  D++++   + F A     +D    I  A+  G
Sbjct: 1  MRLENTLALTHGELINTPFVNSFNNIVFDAKAVRRGDLFIA-----FDEST-IKDAIFNG 54

Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          A  VV +      I    I    V D+   L +L
Sbjct: 55 AYGVVFDKPT--QITDSEIAWIKVKDLEDTLKRL 86


>gi|308234230|ref|ZP_07664967.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|328943512|ref|ZP_08240977.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
 gi|327491481|gb|EGF23255.1| UDP-N-acetylmuramyl-tripeptide synthetase [Atopobium vaginae DSM
           15829]
          Length = 580

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/484 (10%), Positives = 118/484 (24%), Gaps = 63/484 (13%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI 78
           I       +NG+  +S        F   KG  +   +++  A++KGA   + +     ++
Sbjct: 52  ITAAADSLINGLDSNSLYSQKHHIFVC-KGAAFKP-EYLQDALKKGATAYMCDNTHAQAL 109

Query: 79  GS--LSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT---GSVGKTTTKEMLTIALSSI 133
            +         V+++  A+ + A  A       +I +         TT   + +I  +  
Sbjct: 110 RTYCPHAVQIVVNNIRLAMAQAAPLAWGHPDTRLITVGITGTKGKTTTACMIKSILDARA 169

Query: 134 KKTYACIGSYNNHIGV----------------------PLTLARMPVDVDFGIFELGM-- 169
           ++ + C     + IG+                      P     +    + GI  + M  
Sbjct: 170 QRKHICTSQGKSPIGLMGSITTYDGILNEESTNTTPEAPDFWRHLHNAAESGITHMVMEI 229

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHL---------SNFSGIEEIASAKAEIFEGLEKT 220
           S           +   +A+   I+P H+           F     I S        L+  
Sbjct: 230 SSQALKHHRVDGLHLDVALFLNISPDHISKVEHPTFEDYFLSKLMIFSMANAAVMNLDAD 289

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-------------LRKWKQCS 267
               +         L         + + ++     +D +                     
Sbjct: 290 HFEAIYAHAHACSPLLVCGRVHAQRRLEAYETQFLSDKKVASTLKAALNRTLPADIAAHD 349

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
            +                +         +  T  + + L A     +  ++    ++G  
Sbjct: 350 IRPQGCGLQFSCDEAHNANAQQRDFFVPLHGTFNVDNALCAVACADLLHVNTSDIQQGLA 409

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
             +     +   T           +               E     ++      G  +  
Sbjct: 410 NTHVAGRMEFIPTHTQNIQGIVDYAHNKLSFRCFFSDLAHEFPHYKIIALFGAPGGKAFD 469

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQ 438
              DL E  + +    + L+               +   +P+    +             
Sbjct: 470 RRRDLVEEAAKW-ADTIMLTEEDPGHERVQDICNEMAKHMPKGQKYYIECNRAAAIEKAV 528

Query: 439 SSLV 442
               
Sbjct: 529 ELAN 532


>gi|217963819|ref|YP_002349497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|217333089|gb|ACK38883.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes HCC23]
 gi|307571610|emb|CAR84789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Listeria
           monocytogenes L99]
          Length = 455

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGARDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESSPGDIILL 422


>gi|253699158|ref|YP_003020347.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter sp. M21]
 gi|259509773|sp|C6DZK7|MURC_GEOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|251774008|gb|ACT16589.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. M21]
          Length = 461

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 133/420 (31%), Gaps = 44/420 (10%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGL--VVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
            E FF        GH     A +  A    VV+++ +      +      +  V+     
Sbjct: 51  GEIFF--------GH-----AAENVANADVVVISSAVHEDNPEVVEAHLRLIPVIPRAEM 97

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R++     IA+ G+ GKTTT  M+   LS        +     +    L      
Sbjct: 98  LAELMRMKYG---IAVAGTHGKTTTTSMVATILSKGGIDPTIVIGGRLNS---LGTNARL 151

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               F + E   S          L+ P IAV+T I   HL  +SGIEEI     E    +
Sbjct: 152 GQGQFLVAEADES-----DGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKI 206

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQL 276
              G   L  D+     +  +          S+G S  ADF+    +      S++    
Sbjct: 207 PFYGLAVLCLDNGNVADVLPRVKK----RFTSYGLSAQADFRATDVRLSGFSTSFVAHHK 262

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK------RY 330
             +  E+     G H   N L  + +   L    +T  +  + F     R          
Sbjct: 263 GVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRFHLKGEANGI 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G      ++      +  A   ++    PH   R   +  D  +    +    +
Sbjct: 323 MVVDDYGHHPTEIKATLGAAKAGFAENRLVVVFQPHRYSRTKELFEDFVKAFHDADVLIL 382

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
                     I      G    AL + + R     V +    D L   ++  L  GD+++
Sbjct: 383 TDIYPAGEAPIE-----GVTAEALANRVRRHGQRDVTWISDRDKLCEHLERVLAPGDILL 437


>gi|126658806|ref|ZP_01729950.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
 gi|126619904|gb|EAZ90629.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. CCY0110]
          Length = 522

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 135/419 (32%), Gaps = 45/419 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +    A+      P+F   DVL AL +             IA+ G+ GKTTT  +
Sbjct: 118 TAIAHSNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSL 168

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         I             AR+     + + E   S     +       P+
Sbjct: 169 IGYMLLKAGVDPTIIVGGEVDA--WEGNARIGAKGGYLVAEADESDGSLTKHY-----PN 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I   H  ++  ++++           +                    +  L   
Sbjct: 222 IGIVTNIELDHPDHYQTLDDVVKTFQIFETQCDLLIGCLDCETV---------ATQLTPS 272

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
             YS   +K AD+ ++      + +  EV  +G+   E+     G H   N L  + +  
Sbjct: 273 ITYSLDSTKGADYTVKNIVSNHKGTTAEVWEKGRYLGEMRLTIPGSHNVSNALAAIAVGR 332

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  D      AL  F   + R        +    T ID+   A+  S   A    ++  
Sbjct: 333 KLGLDFGVIADALFTFAGAKRRF---EHRGHCNGITFIDDY--AHHPSEIEATLSAARCK 387

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVLALK 415
             GE     V          + +F  + A      ++   + ++ +G           L 
Sbjct: 388 VDGENISRVVAIFQPHRYSRTATFLKEFAACFKDADLVILTDIYSAGEVNLHNISGQDLA 447

Query: 416 DALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEFPAIQ 472
           +A+     HV Y  ++  L   +   L  GD+V+       G   ++I  ++ ++   +
Sbjct: 448 EAIKHNHSHVIYEPSLKHLHQVLPDFLQSGDLVMF---LGAGNLNQIIPQVITQYETTE 503


>gi|90408125|ref|ZP_01216294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
 gi|90310737|gb|EAS38853.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Psychromonas sp. CNPT3]
          Length = 446

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 125/419 (29%), Gaps = 48/419 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   +  +S P + +++VL              +  ++A+ G+
Sbjct: 67  IGNAMSRGNPC--VEEILDKQMPYISGPQWLLENVLK-------------ERWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  ML      ++      G     +     L+    +  F + E          
Sbjct: 112 HGKTSTASMLA---WILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEADEYDCAFFD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    P   V+  +   H   F  ++ I      +   +  +G IF    D     
Sbjct: 169 KRSKFVHYHPRTLVLNNLEFDHADIFENLDAIKKQFHHLIRTVPSSGRIFFPNQDEALMA 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +K                    +       Q     +  +        V    IG H   
Sbjct: 229 VK--------HMGCWSEVEYLGENWSINKIQEDGSKFDVLLNAKIEGRVDWPLIGDHNIN 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFTLIDESYNANPA 351
           N L  +     +    + + +AL+ F   + R +             F     + N    
Sbjct: 281 NALGAIAAARHVGVTPEISTQALASFKSIKRRMEVKGVVNHVTVYDDFAHHPTAINTTLL 340

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FH 410
            ++A +     I+          LG   E            A V +L +   ++      
Sbjct: 341 GLRAKVGEARIIAVVEPRSNTMKLGIQKE------------ALVNALTSADKIYFYESAD 388

Query: 411 VLA-LKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +   + D    +   V  S  +D L   +      GD +++  SN  GF  L   LL++
Sbjct: 389 MQWSIADLFMEQGKKVDISTEIDTLADKLAEIARPGDHILI-MSNG-GFGNLHQKLLDK 445


>gi|92113659|ref|YP_573587.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
 gi|91796749|gb|ABE58888.1| UDP-N-acetylmuramate [Chromohalobacter salexigens DSM 3043]
          Length = 456

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 73/425 (17%), Positives = 123/425 (28%), Gaps = 50/425 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G          V ++ +  +P             LA          ++A+ G+
Sbjct: 67  IGNALSRG-------NPEVEAVLNAKLPYVSGP------QWLAEQVL--PGRRVVAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT---LARMPVDVDFGIFELGMSHLG 173
            GKTTT  +LT  L +  +            GVP      +R+       + E       
Sbjct: 112 HGKTTTASLLTWILEAAGQAP-----GFLIGGVPRNLGVSSRLGEPGAPFVVEADEYDTA 166

Query: 174 EIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                      RP IAV+  +   H   F  +  I      +   +   G + +   +  
Sbjct: 167 FFDKRSKFVHYRPDIAVLGNLEFDHADIFPDLAAIERQFHHLVRTVPGQGQLVVAAGEPA 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E + A+     +    +       D   +   + ++     V+   +   V     G H
Sbjct: 227 LERVLAQGCWSPVVRFGAS-----DDASWQWRLESADGRRFAVRHGERVAHVDWALSGRH 281

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE---SYNA 348
              N +  L   S     ++    AL+ F     R +                   +  A
Sbjct: 282 NVANAVAALAAASACGVALEAGAAALARFESPRRRQEVRGEVGGIQVIDDFAHHPTAIAA 341

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
               + AA      ++          LG M E    S                  VW   
Sbjct: 342 TLEGLAAATDAGRLLAVIEPRSNTMRLGSMRERLPDSV------------AAADRVWWYR 389

Query: 408 GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              V    +AL  +  V    S+ M  L   I +    GD +VV  SN   F  +   LL
Sbjct: 390 PPEVEWSLEALAAACPVPATVSDEMPALVAAIVAEARPGDRIVV-MSNG-AFGGIHEKLL 447

Query: 466 EEFPA 470
               A
Sbjct: 448 AALEA 452


>gi|77919795|ref|YP_357610.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
 gi|109892717|sp|Q3A2G7|MURC_PELCD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77545878|gb|ABA89440.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter carbinolicus DSM
           2380]
          Length = 458

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/415 (18%), Positives = 140/415 (33%), Gaps = 53/415 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLR 105
           GH     A   G A +VV +T + +    +       IPV         +  LA   R++
Sbjct: 56  GH----AAENLGDADVVVTSTAVKSDNPEVIEAHRRLIPVI----PRAEM--LAELMRMK 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  M++  LS        +          +          F + 
Sbjct: 106 YG---IAVAGTHGKTTTTSMVSTVLSKSGIDPTVVIGGRLDS---IGSNAKLGQGKFLVA 159

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S           + P IAV+T +   HL  +S ++EI     +    +   G   L
Sbjct: 160 EADES-----DGSFLKLSPIIAVVTNVDADHLDYYSDLDEIKRTFVDFINKIPFYGVAIL 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVV 284
             DD   + L  +          ++G S  AD+  ++     E++   V  QG+   ++ 
Sbjct: 215 CLDDPNVQALIPQVGK----RFVTYGMSTQADYNAQEISYQEERTTFTVCWQGERLGQLS 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L    +   +A   F   + R +      +     ++ +
Sbjct: 271 IRMPGQHNVLNALAAVAVARELEIPFEQIAEAFCDFCGVQRRFQPKYQGRD----IMVVD 326

Query: 345 SYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +PA +K             V++   PH   R  A+  +       +    +     
Sbjct: 327 DYGHHPAEIKVTLAAACSGWNRRVVAVFQPHRYSRTQALFDEFVTAFYQADHLVVMDIYA 386

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
                I      G     L + +    H  VHY    + +   ++  +  GD+V+
Sbjct: 387 AGETPI-----PGVEARLLAEGIAGHGHRDVHYCPDAEAVAAHLREVVQAGDLVL 436


>gi|328553585|gb|AEB24077.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           amyloliquefaciens TA208]
 gi|328911621|gb|AEB63217.1| UDP-N-acetylmuramoylalanyl-D-glutamate ligase [Bacillus
           amyloliquefaciens LL3]
          Length = 451

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 100/345 (28%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  I ITGS GKTTT  ++   L +        G+      V   +A      ++ + E
Sbjct: 112 NAKFIGITGSNGKTTTTTLVYEMLKADSIKALIAGNIGT---VASEVAYHADGDEWIVTE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L          RP I +I  +  AHL      E    AK +++    ++ T  +N
Sbjct: 169 LSSFQLMGTH----AFRPEIGLILNVFDAHLDYHHSRENYEKAKQKVYLHQLESDTAIVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D     L     A  +    S   S  A  +        E                  
Sbjct: 225 QSDETVVRLAEGGKAGTVPFSVSQELSSGAFIKDGMLMFGDEAIL------------PVD 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I    A N+   L  V+       +      V     G   R +           ++S 
Sbjct: 273 DIVLPGAHNLENILAAVAAAKTAGASNKAIQKVLTSFTGVKHRLQYVTAIQNRKFYNDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+S          G            G    +   DL   +   N+  V  
Sbjct: 333 ATNILATSKALSAFKAPVILLAG------------GLDRGNGFDDLKPYMD--NVKAVLT 378

Query: 407 SGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++         HV   + ++       +   +GDV+++
Sbjct: 379 FGQTAPKIEKLGNELGIQHVKRVDNVEQAVSAAFALSNEGDVILL 423


>gi|156935392|ref|YP_001439308.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156533646|gb|ABU78472.1| hypothetical protein ESA_03250 [Cronobacter sakazakii ATCC BAA-894]
          Length = 438

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A +IAITGS GK+T   ++     +             +IG+P  +  +    +
Sbjct: 99  FCREAQAPVIAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LEEGRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCVSFGI------------DVGDYHLNRQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +         +++KAL+ F     R    + A       
Sbjct: 258 NVKEMKLVGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRF---QLAYEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRV---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              ++  G    AL  AL   I     +TM+     I   +  GD+V++    +S     
Sbjct: 366 --RLYCFGRDGDALA-ALRPEIS-ERMDTMEEAMKVIAGRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDVFTRLAKEL 437


>gi|309801451|ref|ZP_07695578.1| Mur ligase family, catalytic domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|308221966|gb|EFO78251.1| Mur ligase family, catalytic domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 159

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIG 79
                    I+ D+R++         KG  +    +F+    ++G    V   D      
Sbjct: 35  DNADVPFTHITYDTRTVREGTLLVC-KG-RF--RPEFLDGLKERGLVAYVSERDFSD--- 87

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSK 107
              +P   V+D   AL+ L+ A     +
Sbjct: 88  HTEVPGLIVNDARKALSLLSAAFYGMPQ 115


>gi|254393145|ref|ZP_05008303.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444045|ref|ZP_08218779.1| UDP-N-acetylmuramate--L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706790|gb|EDY52602.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 470

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 152/423 (35%), Gaps = 46/423 (10%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L      S+PV    D   AL
Sbjct: 49  ALRELGATVHIGH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRSD---AL 103

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L    R       IA+ G+ GKTTT  ML +AL ++    +     +           
Sbjct: 104 ASLMTGLRA------IAVAGTHGKTTTTSMLAVALGALGLDPSYAIGGDLAG---PGSNA 154

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D D  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 155 HHGDGDIFVAEADESDRSFQKYA-----PEVAIVLNVELDHHANYASMDEIYESFEIFAG 209

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ +  D      L ++        I ++G+S+ AD ++++       S + V 
Sbjct: 210 RIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVV 269

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L   + L   VD    AL  +     R +    A  
Sbjct: 270 LDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRLQLKGEAGG 329

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + +SY  +P  M A +     +       R+ V+     +   +Q    ++ + 
Sbjct: 330 ----VQVIDSYAHHPTEMTADLEA---MRAAAADSRLLVVFQPH-LFSRTQELGTEMGQA 381

Query: 396 LSLYNISHVW---------LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V          + G     +  A       V  +  M  +   +      GD
Sbjct: 382 LALADASLVLDIYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGD 441

Query: 446 VVV 448
           +V+
Sbjct: 442 LVL 444


>gi|153952796|ref|YP_001393561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium kluyveri DSM
           555]
 gi|219853461|ref|YP_002470583.1| hypothetical protein CKR_0118 [Clostridium kluyveri NBRC 12016]
 gi|189028986|sp|A5N4I2|MURC_CLOK5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765992|sp|B9DY44|MURC_CLOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146345677|gb|EDK32213.1| MurC [Clostridium kluyveri DSM 555]
 gi|219567185|dbj|BAH05169.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 457

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 131/396 (33%), Gaps = 43/396 (10%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +  N + +     L+IP+    D    L ++    +       IA++G+ GKTTT  
Sbjct: 75  TAAISKNNEELLKAKDLNIPLM---DRAEFLGEIMKGHKYN-----IAVSGTHGKTTTTS 126

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML+            +   N  I           +  F I E       E +       P
Sbjct: 127 MLSSITLEANLDPTILVGGNLDIIGGNVRIG---NSPFFITEAC-----EYKESFLKFFP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  I   HL  +  IEEI +A  +  + + K G +    DD     ++     +  
Sbjct: 179 FIGIILNIDADHLDYYKDIEEIQNAFIKFGKLIPKEGYLVCCADD---RRMEKIISNVNC 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +    ++ +   +   + +     +   +   K   +     G H   N L ++ +  
Sbjct: 236 NVMSYGIETGDITAKNICFDKEGRAFFEVYKSDKKLFSLNLSVPGEHNILNALASISVSL 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL   VD  I  L  F     R +       Q    ++ + Y  +P  +KA ++      
Sbjct: 296 ILNISVDNIINGLKSFKGTHRRFE----IKGQRKGVVVIDDYAHHPTEIKATLNAAKNYP 351

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLAL 414
                    +          + S   +     +  N+  + L          +G    ++
Sbjct: 352 HKR-----IICVFQPHTFSRTISLFKEF--TAAFDNVDELILSDIFPAREKDTGEISSSM 404

Query: 415 --KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +  + R +     +  D +  ++ + L +GDV++
Sbjct: 405 LCEQIIKRGVKCRNIKDFDSIVQYLNNILTEGDVLL 440


>gi|225023739|ref|ZP_03712931.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
 gi|224943621|gb|EEG24830.1| hypothetical protein EIKCOROL_00603 [Eikenella corrodens ATCC
           23834]
          Length = 451

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 96/342 (28%), Gaps = 35/342 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITGS GKTT   ++             +        +     R     D  + EL 
Sbjct: 117 KIIAITGSNGKTTVTSLVGHLCRE-CGLDTVVAGNIGTPVLEAYEDRQEQSADVWVLELS 175

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L     L        A +  I+  HL+ +  + + A AK +IF G            
Sbjct: 176 SFQLENTDHLNAAA----AAVLNISEDHLNRYDDLLDYAHAKDKIFRGSGVQVINA---- 227

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + L       G +      + +   +           +   +      ++ +H+  
Sbjct: 228 ---DDALCRAMKRSGREVRRFSLQQETDYWFDAASGYLKHGAETLIAAADIPLQGLHNAA 284

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
               A  +   +G+            K             R      +     ID+S   
Sbjct: 285 NVLAALALCEAIGLPREQLLRHVRTFKG---------LPHRVEKIGEKNGVVFIDDSKGT 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  + +AAI+ L             + G   +  + +        + +       V L G
Sbjct: 336 NVGATEAAIAGLQ-------SPLFLIAGGQGKGQDFTP------LKNVLPGKARAVLLIG 382

Query: 409 FHVLALK-DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++ D     + +    ++             GD+V++
Sbjct: 383 EDAPQIRRDLAGCGVEMMDCASLQEAVQTAYRLAEPGDIVLL 424


>gi|223040209|ref|ZP_03610488.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
 gi|222878570|gb|EEF13672.1| Mur ligase middle domain family [Campylobacter rectus RM3267]
          Length = 478

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/360 (19%), Positives = 119/360 (33%), Gaps = 37/360 (10%)

Query: 93  GALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
            A    A        +  II IT S GKT+ K  L   L +         S N   G+  
Sbjct: 145 KAYENSARKKLASMPELKIIMITASFGKTSIKNFLFELLKNDFACRKTPRSVNTLAGLIQ 204

Query: 152 TLAR-MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +   +       I E G    G+I  +T  + P IA++  I   H+  F  +E I + K
Sbjct: 205 DVNNELAAGTQIYIAEAGARLKGDIAQITEFLSPQIAIVGEIGAQHIEYFKTLENIRATK 264

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                                 E L +K                       K     E S
Sbjct: 265 ---------------------LEALGSKRLEKAFVHSSMQANEGTKIEIYDKNLSGVEAS 303

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              V+ +    E     +G   A N+ + +     L  D      AL+     E R +R 
Sbjct: 304 LDGVKFKLGEREFASPLLGKFNAANLAVCVKTALYLGLDEARIAAALARLKNVEHRLERI 363

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                     +ID+ +N N   M A+      ++   EGR++ V   + E    S   + 
Sbjct: 364 DAGGK----IIIDDGFNGNFNGMSASYE----LAAGYEGRKVLVTPGIME---SSDEENE 412

Query: 391 DLAEVLSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L+++++      V L+   + +AL   L R   V   +    +   +  +   GD+++ 
Sbjct: 413 KLSKIINKT-FDIVMLTSSLNAVALLKHLSRPK-VIVIKDKSKMQEVLAQNTKAGDLILF 470


>gi|171463032|ref|YP_001797145.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192570|gb|ACB43531.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 468

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 111/368 (30%), Gaps = 17/368 (4%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKTTT  MLT     ++      G     + +  T++    +  + + 
Sbjct: 104 YGKHVLAVAGTHGKTTTSAMLT---WILEFNGYKPGYLIGGVPLNFTVSAYLGESKYFVI 160

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F+ +  I +    +   +   G +
Sbjct: 161 EADEYDTAFFDKRSKFVHYRPRTALLNNLEFDHADIFADLAAIETQFHHLVRTVPGDGLL 220

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +N ++     +  +     ++       ++ +            +S  EV         
Sbjct: 221 VVNGEEPALASVITRGAWAPVERFGQESVNEWSLISQEADGFIVRKSGKEVAT--VKWAP 278

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY---RCALNQGFFT 340
               +G H   N L  +   + +      +  AL  F   + R +             F 
Sbjct: 279 DSGVMGRHNQLNALAAIASANHIGISPADSAFALVEFKNVKRRLETIGVANDVTIYDDFA 338

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M      S      +    +   
Sbjct: 339 HHPTAITTTVDGLRRRVGNARILAVLEPRSNTMKLGVMKAQLPSSLEAADKVFAYSANSG 398

Query: 401 ISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              +   G+ +  +   L +      H  + ++ L   +      GD ++V  SN  GF 
Sbjct: 399 KESL---GWDLAEVLSPLNQQEQWKAHAFDDLELLVKAVALEAKPGDHILV-MSNG-GFG 453

Query: 459 RLINLLLE 466
            +   +L+
Sbjct: 454 GVHQKILK 461


>gi|163738719|ref|ZP_02146133.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
 gi|161388047|gb|EDQ12402.1| UDP-N-acetylmuramate--alanine ligase [Phaeobacter gallaeciensis
           BS107]
          Length = 465

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 123/411 (29%), Gaps = 45/411 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           F+  A +    A +VV+++ +      L         V+     LA   RL+S    IAI
Sbjct: 60  FVGQAAENLEDAAVVVISSAIKPGNPELDEARLRGLPVVRRAEMLAELMRLKSN---IAI 116

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  M+   + +    +      N  I             ++ + E   S   
Sbjct: 117 AGTHGKTTTTTMMAELMVA---GHFDPTIVNGGIIHAYGSNARMGQGEWMVVEADES--- 170

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                 + +   IAV+T I P H+ ++   + +     +    +   G      D    +
Sbjct: 171 --DGTFNRLPATIAVVTNIDPEHMEHWGDFDTLRDGFYDFVSNIPFYGVAVCCTDHPEVQ 228

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  +     + T     ++      L      +                     G H  
Sbjct: 229 ALVGRITDRRVVTYGFNAQADVRAVNLTYKAGVAHFDIHLQAEDRVIEGCTLPMPGDHNV 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L        +AL+ F     R       + +     I + Y  +P  +
Sbjct: 289 SNALSAVAVARHLGMKSSEIREALAAFGGVNRRFT----KVGEVDGVTIIDDYGHHPVEI 344

Query: 354 K---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
                         V++   PH   R  ++  D C                  +  I+ V
Sbjct: 345 TAVLKAARQACDGRVIAVHQPHRYSRLSSLFEDFCAC-----------FNEADVVAIAEV 393

Query: 405 WLSGFHV------LALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVV 447
           + +G           L   L R  H H    +D   L   ++     GD+V
Sbjct: 394 FAAGEDPIEGAGRDDLVAGLIRHGHRHARALLDESDLERLVREQARPGDMV 444


>gi|332528462|ref|ZP_08404454.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
 gi|332042141|gb|EGI78475.1| UDP-N-acetylmuramate--L-alanine ligase [Hylemonella gracilis ATCC
           19624]
          Length = 477

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 137/426 (32%), Gaps = 49/426 (11%)

Query: 56  FILHAVQ--KGAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q    A  VV +T + A            IP+         +  LA   RL+  
Sbjct: 54  FVGHAAQHVADADAVVTSTAVKADNPEVLAARDKHIPIV----PRAVM--LAELMRLKRG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++   L+        +     +            +   G  E 
Sbjct: 108 ---IAIAGTHGKTTTTSLVASVLAEAGLDPTFVIGGRLN--------SAGANARLGQGEF 156

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +    E       + P ++V+T I   H+  +             F          +  
Sbjct: 157 IVVEADESDASFLNLLPVLSVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILC 216

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG----KSMEV 283
            D        +        I S+G   NA  +    +    Q     Q +       +EV
Sbjct: 217 TDDPA---VREVADTVNCPITSYGFGDNAQVRAVNVRAVGGQMHFTAQRRNGVVLPDLEV 273

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI- 342
           V +  G H   N L  + + + L       +KAL+ F     R +RY     +G  T   
Sbjct: 274 VLNLAGRHNVLNALSAIAVAAELEIPDVALLKALAEFKGVGRRFQRYGEIPAKGGGTFTL 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID----LAEVLSL 398
            + Y  +P  M A +S      P     +  VL         ++    D    + E    
Sbjct: 334 IDDYGHHPVEMAATLSAARGAFPG----QRLVLAFQPHRYTRTRDCFEDFVKVIGESADA 389

Query: 399 YNISHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVK 450
             ++ V+ +G   +   D   L R++ V       + + +  +   I      GDVV+  
Sbjct: 390 VLLAEVYAAGESPIVAADGRSLTRALRVAAKVEPVFVDDIAAMPQTILDLARAGDVVMCM 449

Query: 451 SSNSCG 456
            + S G
Sbjct: 450 GAGSIG 455


>gi|260220013|emb|CBA27126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Curvibacter
           putative symbiont of Hydra magnipapillata]
          Length = 513

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 108/356 (30%), Gaps = 22/356 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +  ++AITG+ GKTT   +    ++   KT A  G+    + +      +  D    ++
Sbjct: 127 YQPAVLAITGTNGKTTVTSLTGQLIAHAGKTVAVAGNIGPTL-LDTLTQHLQADTLPDVW 185

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
            L +S             P  AV+  +   HL     ++  A AKA IF           
Sbjct: 186 VLELSSFQLDA--AGSFEPTAAVVLNVTQDHLDWHGSMQAYAGAKARIFGQRGMMVLNRE 243

Query: 226 NY--DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +        E ++ +      +   SFG            +  +   W+   L+      
Sbjct: 244 DATVMAMRPEPVRVRLQKPQERAYISFGTDMPQRPGDFGIEDVNGMVWLVRALEADETRK 303

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIK---------ALSVFHPKEGRGKRYRCAL 334
                   +    LM    + I      +              ++     G  +      
Sbjct: 304 RRKDEEEEIHIQRLMPADALRIRGRHNASNALAALALCASAGCALAPILYGLREYRGEPH 363

Query: 335 NQGFFTLIDES-YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 +I++  +  +        +V +      + R I +LG     GE        LA
Sbjct: 364 RVEPVGIINDVEFFDDSKGTNVGATVAALQGLGADRRIIVILG-----GEGKGQDFAPLA 418

Query: 394 EVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +    +  V L G     ++ AL    I +  +++M        +    GD V+
Sbjct: 419 APV-ERYVRAVVLIGRDAPLIRAALELTGIPLVDADSMASAVTLANAKAHAGDAVL 473


>gi|110833457|ref|YP_692316.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
 gi|118595639|sp|Q0VS04|MURD_ALCBS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110646568|emb|CAL16044.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax
           borkumensis SK2]
          Length = 441

 Score = 55.6 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 136/393 (34%), Gaps = 44/393 (11%)

Query: 61  VQKG----AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +KG    A  ++V+  +  S  +++     V D    +  + + AR  S+  ++AITGS
Sbjct: 59  FKKGWMGKARRLIVSPGVAVSTPAIAE---QVVDGKEVIGDIELFARAASE-PLVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +L     +             ++GVP     +       + EL    L    
Sbjct: 115 NAKSTVTTLLGQVADACGMN----PGIGGNLGVPALEL-LDDQARLYVLELSSFQL---- 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T+ +   +A +  ++  HL  ++   +  +AK  +++G +              + L 
Sbjct: 166 ETTYSLSAEVATVLNVSQDHLDRYASFADYLAAKQRVYDGCQVAVWNR--------DDLA 217

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  A  +    SFG    AD++L         S     L      +    +      N 
Sbjct: 218 TRPPAT-VARQISFGAHPEADYRL--------DSENGQLLCRGEPLLSLSELALTGHHNA 268

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L +++I  A      KAL+      G   R +     G     ++S   N  +    
Sbjct: 269 MNILSVLAISDALSLNRDKALATVKTFTGLPHRCQLVAESGGVRWFNDSKATNVGAT--- 325

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+ I    EG+ I V G + +  + S      LAE    Y +    L G     +  
Sbjct: 326 LAALTGIGESIEGKVILVAGGLGKGQDFSP-----LAEPARQY-LRAALLMGEDRTTVAQ 379

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  +        M        +    GD V++
Sbjct: 380 GMSAA-PCELVADMAVAVRRAHALAQPGDAVLL 411


>gi|262364615|gb|ACY61172.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Yersinia pestis D182038]
          Length = 370

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 82/297 (27%), Gaps = 23/297 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S  G I+     +     V T ++  HL     +    +AK  +F   +    I   
Sbjct: 57  MEVSSHGLIQDRVAALSFAAVVFTNLSRDHLDYHGNMTSYEAAKWLLFSTHQSEHKIINA 116

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGKSMEVVH 285
            DD     L     A+ +    +  K  N  +    K       + +         E+  
Sbjct: 117 DDDVGRRWLSQLPQAVAVSMAGNVPKGWNGPWLSANKVIYHDNGASIAFDSSWGEGELES 176

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G     N+L+ L  + +    +   + A     P  GR + +              +
Sbjct: 177 RLMGAFNVSNLLVALATLLVQGYPMAQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHT 236

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +A           L+    H  G+   V G     G         L   ++      V 
Sbjct: 237 PDA-------LEKALAAARLHCTGKLWCVFG----CGGDRDKGKRPLMGGIAEQLADCVV 285

Query: 406 LSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++  +            +   L  +  V                  + DVV++  K 
Sbjct: 286 VTDDNPRSEEPQAIVADILSGLLDAGRVQAIHGRAEAVTSAIMQAKEDDVVLIAGKG 342


>gi|260773493|ref|ZP_05882409.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
 gi|260612632|gb|EEX37835.1| UDP-N-acetylmuramate--alanine ligase [Vibrio metschnikovii CIP
           69.14]
          Length = 487

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 127/371 (34%), Gaps = 33/371 (8%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFETLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  + Q   +
Sbjct: 217 FVDFLHNLPFYGQAVLCIDDPVVRELIPRI----SRHVITYGFSEDADVRIADYHQQGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  ++     + +  +  G H A N    + + S    D D  ++A++       R  
Sbjct: 273 GHFTVLRQDKADLAITLNIPGRHNALNAAAAIAVASEDDIDDDAILRAMASTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 333 HLGEFATGNGHVMLVDDYGHHPTEVDVTIKA----ARNGWTEKRLVMIFQPHRYTRTRDL 388

Query: 389 HIDLAEVLSLYNISH---VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFI 437
           + D A VL   ++     V+ +G          +L   + R   +   +      L   +
Sbjct: 389 YDDFAHVLEQVDVLLMLDVYSAGEKPIAGADGRSLCRTIRRRGKIDPIFIPDSAALPAVL 448

Query: 438 QSSLVDGDVVV 448
            + L DGD+V+
Sbjct: 449 ANILQDGDLVL 459


>gi|34497121|ref|NP_901336.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
 gi|34102978|gb|AAQ59342.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Chromobacterium violaceum ATCC 12472]
          Length = 456

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 116/409 (28%), Gaps = 42/409 (10%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             ++  I +  +P             LA          ++A+ G+ GKTTT  ML   L 
Sbjct: 75  KPLMEEILNRGLPYISGP------QWLAENVLR--DKWVLAVAGTHGKTTTSSMLAWILE 126

Query: 132 SIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THL 181
                            G      G P           F + E                 
Sbjct: 127 DAGLAPGFLIGGIPENFGVSARLPGAPALDPASV--SPFFVIEADEYDTAFFDKRSKFVH 184

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A++  +   H   F+ +  I +    +   +   G I  N  ++  + + A+   
Sbjct: 185 YRPRTAILNNLEFDHADIFADLAAIETQFHHLVRTIPGNGRIVSNGREANLDRVLARGC- 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                 ++  +    D   +      +  +  +    +   V    +G H   N +  + 
Sbjct: 244 ------WTPAERFGVDAGWQLGALHEDGGFDVLLNGEQQGTVRWALMGEHNRLNAIAAIA 297

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAIS 358
                   V  AI ALS F   + R +    A        F     +       ++  + 
Sbjct: 298 AARHAGVAVKDAIDALSRFANVKRRMEVKGVAGGVTVYDDFAHHPTAIATTLEGLRRKVG 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
               ++          LG M +    S +    +    +  N +     G  +  +    
Sbjct: 358 DARILAVLEPRSNTMKLGTMKDALPGSLALADKVFCSAAGLNWNP----GEALQVM---- 409

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
                       D L   I +    GD V+V  SN  GF  +   LL++
Sbjct: 410 --GAKAQTFSDFDALLGAIAAEAKPGDHVLV-MSNG-GFGGIHQKLLDK 454


>gi|313607758|gb|EFR83975.1| UDP-N-acetylmuramoylalanine--D-glutamateligase [Listeria
           monocytogenes FSL F2-208]
          Length = 461

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 167 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 222

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 223 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 273

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 274 IGARDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 331 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 377

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 378 -NVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 428


>gi|227497588|ref|ZP_03927811.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
 gi|226832957|gb|EEH65340.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           urogenitalis DSM 15434]
          Length = 506

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/436 (14%), Positives = 122/436 (27%), Gaps = 67/436 (15%)

Query: 59  HAVQKG---AGLVVVN-TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR--------- 105
            A+  G   A + V     +  +I    + +  V   + A   +A +AR R         
Sbjct: 57  EALPAGVKPASVAVGEAQAVAEAIAGSQLRLLIVSPGVPATGAVARSARDRGIETWSEIE 116

Query: 106 ----------SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                      +   I +TG+ GKTTT  ML+  L++       +     +IGVP     
Sbjct: 117 LAWRLQRSTHPEVPWITVTGTDGKTTTVGMLSAILTAAGLEAPAV----GNIGVPTISVV 172

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                     EL    L         + P  A    ++  HL    G+E  A+ K+ ++ 
Sbjct: 173 AAGGAQALAVELSSFQLHTTH----SLSPLAAACLNLSADHLDWHGGMEAYAADKSRVYT 228

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG------------KSKNADFQLRKW 263
             ++     L   D     +  ++  +       FG            +    D      
Sbjct: 229 HAQRAAVYNLA--DPATLRMVEQADVVEGCRAIGFGLGAPGLGQVGLVEDVMVDRAWHPR 286

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +         +                       +    +++    V   + A++     
Sbjct: 287 RHHEAAELATLADLAHLAPGGEVDRLPAHIAADALAAASLALAHPQVQADLGAVARGLRA 346

Query: 324 EGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              G             T +D+S   N  S        + +S    G  + ++G      
Sbjct: 347 FTPGAHRLVTVAEGAGVTWVDDSKATNAHS------TQAALSSVRPGSAVWIVGGD---- 396

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-----HVHYSET----MDGL 433
                 H  +A       +    + G     +  AL          V  + +    ++  
Sbjct: 397 TKGADLHELVAR--VRPYLRGAVVIGADPTPVLQALEDEAPDLPRRVVPAASAREVIEEA 454

Query: 434 FLFIQSSLVDGDVVVV 449
                +   +GD V++
Sbjct: 455 VRQASAMAQEGDTVLL 470


>gi|183602422|ref|ZP_02963788.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683263|ref|YP_002469646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191224|ref|YP_002968618.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|241196630|ref|YP_002970185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|183218341|gb|EDT88986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620913|gb|ACL29070.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249616|gb|ACS46556.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251184|gb|ACS48123.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|289177340|gb|ADC84586.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis BB-12]
 gi|295794217|gb|ADG33752.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 481

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 118/366 (32%), Gaps = 38/366 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  S A  I ITG+ GKT+T EM +  L +   T   +     +IG  L+ A +    D 
Sbjct: 101 RTGSPAPWIGITGTNGKTSTTEMTSEMLKACGYTAPAV----GNIGNALSAAALDPVNDV 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L       + +    A IT IA  HL    G+   A+ K+++F+G ++   
Sbjct: 157 LCVELSSFQLHFT----YSLELDCAAITNIAADHLDWHGGMANYATDKSKVFDGAKRVIA 212

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKS----------KNADFQLRKWKQCSEQSWM 272
                         A++        ++ G+              D       Q  E   +
Sbjct: 213 YNAQDARVSELARTAQTAEGCEHIGFTLGEPVSGQIGIKDGWIVDMSGLCGGQTGEAYAL 272

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                   +      I  H+  + L  L +V  L ADV TA+ AL  F P   R +    
Sbjct: 273 APIADFTHLAEPDGTIYPHLLADALTALILVVGLGADVATALNALKRFAPGGHRIQTVAE 332

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             +        +   A  A         + ++    G  + + G + +     +    + 
Sbjct: 333 LASPEGTIRFVDDSKATNAHA-----ARASLNSFAPGSVVWIAGGLSKGATFEELVEQE- 386

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH---------VHYSETMDGLFLFIQSSLVD 443
                   +  V + G     + +AL                 +  M+            
Sbjct: 387 -----RNRLKAVVVIGIDQKPMLEALKAKAPELPLTVIDPADNATVMERAIDAAADFAEP 441

Query: 444 GDVVVV 449
           GDVV++
Sbjct: 442 GDVVLL 447


>gi|157377044|ref|YP_001475644.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
 gi|157319418|gb|ABV38516.1| UDP-N-acetylmuramate [Shewanella sediminis HAW-EB3]
          Length = 487

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 125/383 (32%), Gaps = 25/383 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A++G+ GKT+T  ML      +++     G     +     ++ 
Sbjct: 116 QFLAEHIL--PNRWVLAVSGTHGKTSTSSMLA---WILEECGYEPGFLIGGVPQNFGVSA 170

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +  F + E     S   + R      +P   VI  +   H   F  ++ I      +
Sbjct: 171 RLGNSPFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHV 230

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS------ 267
              +   G I    D    + +         +T            + +   Q        
Sbjct: 231 IRTVPGQGKIIWPKDSEAVQQVIEMGCWSEQETYTKSQSRGPKAIEQQAPAQGWSTQLIA 290

Query: 268 --EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                +           +    IG H  +N  M +     +    + AI+AL+ F P + 
Sbjct: 291 DDGHKFELFFNGDSQGILDWSLIGQHNVENATMAIAAALHVGVQPEVAIEALTKFSPPKR 350

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +          +    + +  +P ++    + L          +I ++ +       S
Sbjct: 351 RMELIGTVNGIEVY----DDFAHHPTAI---ATTLQGTRAKVGEGKITIILEPRSNTMKS 403

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDG 444
                 LA+ + L + ++++ +      +K A+ ++   V     +D +   + S    G
Sbjct: 404 GVHKDTLADSMKLADEAYLYQADNIGWDVKAAMEKAELPVTVLYQIDEIIDAVASKAKSG 463

Query: 445 DVVVVKSSNSCGFYRLINLLLEE 467
           D ++V  SN  GF  L   LL +
Sbjct: 464 DTIIV-MSNG-GFGGLHQKLLAK 484


>gi|78221631|ref|YP_383378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
 gi|122063247|sp|Q39YM1|MURD_GEOMG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78192886|gb|ABB30653.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           metallireducens GS-15]
          Length = 452

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 89/289 (30%), Gaps = 27/289 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + E+    L  I       RP +AV+  I   HL  ++  +E   AK  IFE  E T
Sbjct: 158 ERVVVEISSFQLEWIS----SFRPRVAVLLNITEDHLDRYATFQEYIDAKVRIFENQEST 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     +  +  A           ++    +        +            
Sbjct: 214 DYAVLNVDDPIVAGIAGRVAATVFPMSQQRELAEGVFHRDGVITFRHQGREERFPTARFR 273

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +  VH+      +    + LG           A +AL+      G   R           
Sbjct: 274 ITGVHNIENIMASLAATLLLG---------CDAKQALAAVEGFGGLPHRMELVRELAGVR 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S++ A++  + I+                 G+     +  LA +++   
Sbjct: 325 YYEDSKATNVGSVEKALASFNDITLIAG-------------GKDKGGSYAPLAPLVTER- 370

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + H+ L G     +   L        + T++       S    G VV+ 
Sbjct: 371 VRHMVLIGEAKERMARELGSLTDTRMATTLEEAVELAASLTEPGGVVLF 419


>gi|225575651|ref|ZP_03784261.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037108|gb|EEG47354.1| hypothetical protein RUMHYD_03744 [Blautia hydrogenotrophica DSM
           10507]
          Length = 459

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 131/383 (34%), Gaps = 45/383 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++          T IA+ G+ GKTTT  M++  L           + +    +P+ 
Sbjct: 101 ELLGQIMRNY-----DTPIAVAGTHGKTTTTSMISHILLESDCD----PTISVGGILPVI 151

Query: 153 LARMPV-DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              + V + +  + E       E         P I++I  I   HL  F  IE+I  +  
Sbjct: 152 GGNIRVGNSETFVTEAC-----EYTNSFLSFFPKISLILNIDADHLDFFKDIEDIRHSFR 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              E L   GT+ +N D   +  +           I ++G + NAD+  +  +       
Sbjct: 207 LFAEKLPADGTLIINSDTDKYTEIIRDL----PCEIITYGLNSNADYTAQNIQYNEYGYA 262

Query: 272 MEVQLQGKSM--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               ++             G H   N L TL +   L  + +     L  F   + R + 
Sbjct: 263 TFDCVKDGVNLGTYSLSVPGIHNVSNALATLVLGFKLGLNSEALKTGLKHFQGTDRRFQY 322

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCE 380
                       + + Y  +P  +KA ++               PH   R  A+L +   
Sbjct: 323 KGKVGE----VTVIDDYAHHPTEIKATLTAAKNYPHKSLWCVFQPHTYTRTKALLPEFAR 378

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL-KDALPRSIHVHYSETMDGLFLFIQS 439
               +   H+ LA++ +     ++   G     L K  L      HY  T D +  ++  
Sbjct: 379 ALTFAD--HVVLADIYAARETDNL---GISSRDLQKQILELGTDCHYFSTFDEIENYLLE 433

Query: 440 SLVDGDVVVVKSSNSCGFYRLIN 462
           + + GD +++      G   ++N
Sbjct: 434 NCIPGD-LLIT----MGAGDVVN 451


>gi|300722060|ref|YP_003711340.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628557|emb|CBJ89129.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Xenorhabdus nematophila ATCC 19061]
          Length = 491

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 140/411 (34%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV +T + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 79  ASVVVASTAIPADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMISGIYAQAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +    E +          L   G   +  DD   + L  
Sbjct: 185 ---LQPMVAVVTNIEADHMDTYQGDFENLKQTFVNFLHNLPFYGRAVMCIDDPVVKELIP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S+ AD ++  ++Q   +  +   +     + VV +  G H A N 
Sbjct: 242 RI----GRYVTTYGFSEEADVRITHYEQKGAQGFFTVSRQGFPDLHVVLNAPGCHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +    +    + +L+ F     R         +    +    ++ + Y  +P 
Sbjct: 298 TAAVAVATEEGINDSAILASLAEFQGTGRRFDFLGDFSLKYINKKEGSVMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + +          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAAR--AGWTDKRIVMIFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +   +    + +   +   + + D+V+V+ 
Sbjct: 414 ETPIPGADSRSLCRTIRSRGKLDPIFVSDPEQISSILSQFMENNDLVLVQG 464


>gi|294815699|ref|ZP_06774342.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328298|gb|EFG09941.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 529

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 84/423 (19%), Positives = 152/423 (35%), Gaps = 46/423 (10%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGAL 95
           A++  G     GH      +   A  VVV++ + A    L      S+PV    D   AL
Sbjct: 108 ALRELGATVHIGH--AAGHLADDASCVVVSSAIRADNPELVRAAELSVPVVHRSD---AL 162

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L    R       IA+ G+ GKTTT  ML +AL ++    +     +           
Sbjct: 163 ASLMTGLRA------IAVAGTHGKTTTTSMLAVALGALGLDPSYAIGGDLAG---PGSNA 213

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              D D  + E   S     ++      P +A++  +   H +N++ ++EI  +      
Sbjct: 214 HHGDGDIFVAEADESDRSFQKYA-----PEVAIVLNVELDHHANYASMDEIYESFEIFAG 268

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ +  D      L ++        I ++G+S+ AD ++++       S + V 
Sbjct: 269 RIVPGGTLVIAADQPGAVELTSRLRERTELRIVTYGESEGADVRVQRVTPNGLTSEVAVV 328

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L G+ +       G H A N +  L   + L   VD    AL  +     R +    A  
Sbjct: 329 LDGRPLTFTVSVPGRHYAHNAVAALAAGAALGIPVDELATALGAYTGVGRRLQLKGEAGG 388

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + +SY  +P  M A +     +       R+ V+     +   +Q    ++ + 
Sbjct: 389 ----VQVIDSYAHHPTEMTADLEA---MRAAAADSRLLVVFQPH-LFSRTQELGTEMGQA 440

Query: 396 LSLYNISHVW---------LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + S V          + G     +  A       V  +  M  +   +      GD
Sbjct: 441 LALADASLVLDIYPAREDPVPGVTSELIITAARAAGADVTPAHAMREVPETVAGMAKPGD 500

Query: 446 VVV 448
           +V+
Sbjct: 501 LVL 503


>gi|290892183|ref|ZP_06555179.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
 gi|290558306|gb|EFD91824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Listeria
           monocytogenes FSL J2-071]
          Length = 455

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 90/292 (30%), Gaps = 31/292 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 ADDFLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGARDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIDVHYVDNVEAAVPVAYRESAPGDIILL 422


>gi|219685169|ref|ZP_03539989.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
 gi|219673265|gb|EED30284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Borrelia
           garinii Far04]
          Length = 451

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/452 (14%), Positives = 137/452 (30%), Gaps = 79/452 (17%)

Query: 61  VQKGAGLVVVNTDMVAS-----------------------IGSLSIPVFGVDDV----LG 93
           ++ GA LV+ +    A                        I         V +       
Sbjct: 30  LKHGAKLVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDINDFKKADIVVKNPSVKPNN 89

Query: 94  ALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L   L          G+    
Sbjct: 90  KYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLVSLLYQVLKKKYPKAKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P +++IT +   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGRSPLILELSS----WQLQSLENFNPILSIITNVYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLN-YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              K++IF        I  +     +F   ++K+  +           ++  +  +    
Sbjct: 203 IIDKSKIFVNQTSGIAIIQDKAYYKYFSKFESKAKVILFSEFNPLVLDQDVFYYNKGEVY 262

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            ++            +               L+   +   L  D++   K L+ F   E 
Sbjct: 263 FNDN-----------LIGSFSESQVVFMIPKLIAFFVSYYLNMDLNHTFKILNKFRGIEH 311

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  +   N       +++ +  P S   ++     +  +     + V G   E+   S
Sbjct: 312 RLEFVKLVQNVM---FYNDTASTIPDSTVLSVKS---LKTNDNSINLIVGGTDKELDFSS 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDG 444
                   ++++L   + + + G   + +   L +S I     +++     +       G
Sbjct: 366 ------FCKIINLVK-TWILIKGSATVKIIKILEKSSIQYFVFDSLRDAVNYAIKISSPG 418

Query: 445 DVVVVK-SS-----------NSCGFYRLINLL 464
           D+++   +S               F  L+N+L
Sbjct: 419 DIILFSPASASFELFNNEFDRGLQFKNLVNML 450


>gi|257095677|ref|YP_003169318.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257048201|gb|ACV37389.1| UDP-N-acetylmuramate [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 452

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 130/418 (31%), Gaps = 44/418 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G         ++ +I    +P             LA          ++A+ G+
Sbjct: 67  VGNAIARG-------NPLLEAILEHGLPYLSGP------QWLAERVLQ--GRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  ML   L     +    IG    + GV   LA    +  F + E         
Sbjct: 112 HGKTTTAAMLAWILEHAGLSPGFLIGGVPMNFGVSARLAGKDAESPFFVIEADEYDTAFC 171

Query: 176 RFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                    R   AV+  +   H   F  +  I +        L     I  N  ++  E
Sbjct: 172 DKRSKFVHYRARTAVLNNLEFDHADIFPDLAAIETQFHHFVRILPGNALIVANAAEASLE 231

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            + A+         ++  +  N     R     S+ S   ++             G H  
Sbjct: 232 NVLARGC-------WTPIERFNDADGWRAEGSDSDGSLELLRGDSVVGTTRWGLAGDHNR 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N +  L         +   + ALS F     R +    A        + + +  +P ++
Sbjct: 285 SNAVAALLAARHAGVPLARGLAALSRFENVRRRLELRGVAGG----VQVYDDFAHHPTAI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVWLSGFH 410
               + L+ +     G RI  +     +   S +  + + +     SL +   V+     
Sbjct: 341 ---AATLAGLRRKVGGARILAV-----LEPRSNTMKLGIMKSMLPASLADADLVFCYAAD 392

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++   P          +D L   +  +   GD V+V  SN  GF  + + LL 
Sbjct: 393 LGWNVVEALAPLGDKAVVENDLDRLVRRLADTARPGDQVLV-MSNG-GFGGIHDKLLA 448


>gi|320540404|ref|ZP_08040054.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
 gi|320029335|gb|EFW11364.1| putative UDP-N-acetylmuramate:L-alanine ligase [Serratia symbiotica
           str. Tucson]
          Length = 491

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 126/399 (31%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        I                     F I E   S    +      ++P +A+IT
Sbjct: 142 AEADLDPTFINGGLVK---AAGTHARLGSSRFLIAEADESDASFLH-----LQPMVAIIT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L         + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP----CVGRHITT 249

Query: 250 FGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++    +  ++  +   +     + V  +  G H A N      + +    
Sbjct: 250 YGFSNDADVRIENYHQLGAQGCFTLSRQDKPLITVTLNAPGRHNALNAAAAAAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D D  ++AL+ F     R              +    ++ + Y  +P  + A +      
Sbjct: 310 DDDDILRALASFQGTGRRFDFLGEFPLATVNGKAGSAMLVDDYGHHPTEVDATLQAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          AL
Sbjct: 370 WPDK----RLVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLEVYAAGETPIPGADSRAL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     +        D +   +   L   D+V+V+ 
Sbjct: 426 CRTIRSRGKLDPILVSDADSVPEILAQLLQADDLVLVQG 464


>gi|227327093|ref|ZP_03831117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. carotovorum WPP14]
          Length = 438

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 76/376 (20%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALQL-LEQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V  +   
Sbjct: 210 VVNADDALTMPVRGADARCRSFGV------------DVGDYHLNRQQGETWLRVDGERVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + A  +    
Sbjct: 258 NTREIKLVGQHNYTNALAALALADAVKIPRSSALTALTSFTGLPHRF---QMAFERNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALSGLAV-----EGTLHLLLGGDGKSADFSP-----LVPYLQGEH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I HV+  G     L  AL   I    +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-HVYCFGQDGQQLA-ALRPEI-AEQTETMEQAMCIIAERVKPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAEEL 437


>gi|190149285|ref|YP_001967810.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262598|ref|ZP_07544228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914416|gb|ACE60668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872021|gb|EFN03735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 436

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNDEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLNAVAATILNISEDHMDRY--------------NNSLEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEHNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +        +  +KAL ++     R    +          
Sbjct: 257 TKEMLISGRHNEMNSLAAMALAEAAGIPREGIVKALQMYGGLNHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQV-----AGTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSSQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|23014458|ref|ZP_00054273.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 457

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 126/408 (30%), Gaps = 56/408 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +     + ++PV  V DV   L         ++   ++A+TG+ GK+TT  +L   L+
Sbjct: 83  HAIAEKARAANVPV--VCDV-ELLG------LAKAGTRMLAVTGTNGKSTTTTLLAHVLA 133

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                     +   ++G               + EL    L     LTH ++   A++  
Sbjct: 134 E----CGLPVAAGGNLGTAALDLPELPGDGRYVLELSSYQL----ELTHSLKLGAAILLN 185

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I P HL    G+    +AK  +F+ L   G   +  DD     + A+    G++ +    
Sbjct: 186 ITPDHLGRHGGMNGYIAAKRRVFDFLTPGGAAVIGVDDGPCRAIAAELERRGLRVVKISV 245

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
           +S   +          +   ++       ++ +    G H  QN                
Sbjct: 246 ESVLTEGV-----SAPDGVLLDNGKPVTDLKEIPSLPGSHNWQNACAVYAAARAEGLSPK 300

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
               ALS +     R               I++S   N  +++ A+     I        
Sbjct: 301 DIAAALSTYPGLAHRQ---ELVGEDHGIAWINDSKATNADAVEKALVCYEHI-------Y 350

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
             + G   E G  S   H           I H +L G    A    L   +      T+ 
Sbjct: 351 WILGGQAKEGGIASLERHF--------GRIQHAFLIGEASEAFAATLEGKVRYTRCVTLA 402

Query: 432 GLFLFIQSSLVDGD----VVVV---KSS---------NSCGFYRLINL 463
                 ++  V  D    VV++    +S             F  L+  
Sbjct: 403 NAVAAARNLAVSDDIPGAVVLLSPACASWDQFKSFEDRGDTFRDLVQA 450


>gi|329908805|ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327546598|gb|EGF31569.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 461

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 114/371 (30%), Gaps = 27/371 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   LA    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTASMLAWILEDAGYQPGFLIGGVPLNFGISARLAGEGGESAFFVIEAD 164

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                           R    V+  +   H   F  +  I +    +   + + G + +N
Sbjct: 165 EYDTAFFDKRSKFVHYRARTVVLNNLEYDHADIFPDLGAIETQFHHLVRTVPRIGRLLVN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             ++    +  +     I+          AD    +  + ++ S+  +        V   
Sbjct: 225 QREAALHTVIERGCWSEIEWFG-----GAADAAGWQLDEHADGSFTVIFHGAPQGTVHWM 279

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLID 343
             G H   N L  +     +   V  AI +L  F     R +             F    
Sbjct: 280 LNGEHNRMNALAAIAAARHVGVPVAQAIASLGAFQNVRRRMELRGEVDAIRVFDDFAHHP 339

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            +     A ++  +     ++          LG M      S +    +    +  +   
Sbjct: 340 TAITTTVAGLRQVVGTARILAVLEPRSNTMKLGTMKSALPGSLAEADLVFGYGAKGD--- 396

Query: 404 VWLSGFHVL--ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
               G + L   L +AL          + +  L   I ++   GD ++V  SN  GF   
Sbjct: 397 ----GKNALGWNLAEALAPLGQKAQAFDDLSELVAAIVAAARPGDQILV-MSNG-GFGGV 450

Query: 459 --RLINLLLEE 467
             ++++ L   
Sbjct: 451 HQKILDALAAR 461


>gi|306968292|ref|ZP_07480953.1| hypothetical protein TMIG_00825 [Mycobacterium tuberculosis
          SUMu009]
 gi|308354098|gb|EFP42949.1| hypothetical protein TMIG_00825 [Mycobacterium tuberculosis
          SUMu009]
          Length = 52

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQEAFFAIKG 48
          M  L T   + + + G    I PQ      V G +  DSR+I P   F A+ G
Sbjct: 1  MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPGGLFLALPG 52


>gi|307824832|ref|ZP_07655055.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
 gi|307734190|gb|EFO05044.1| UDP-N-acetylmuramate/alanine ligase [Methylobacter tundripaludum
           SV96]
          Length = 480

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 133/395 (33%), Gaps = 31/395 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +VV ++ +  S   +         V+     LA   R R     IA+ G+ GKTTT  + 
Sbjct: 78  VVVASSAIDRSNEEIDEAYIQRIPVIPRAEMLAELMRFRFG---IAVAGTHGKTTTTSLT 134

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L+        +     +         +     + + E   S           ++P +
Sbjct: 135 ASILAEGGLDPTFVIGGRLNSAGSNAKLGLGH---YLVAEADES-----DASFLYLQPMM 186

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++T I   H++ +   E       + F+        +        +           K 
Sbjct: 187 AIVTNIDQDHMATY---EGSYQRLKDTFKEFLHHLPFYGLAVMCLDDEGVRAVLPEISKP 243

Query: 247 IYSFGKSKNADFQLRKWKQ--CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
           + ++G  ++AD +    KQ        +  +     ++V  +  G+H   N L  + + +
Sbjct: 244 VTTYGVHEDADVRAVNIKQEGMHTSFDVIRRGDYPPLQVTLNMPGWHNMLNALAAISVAT 303

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L       IK+L  F     R +             + + Y  +P  + A +  L Q  
Sbjct: 304 KLAVGDAAIIKSLGAFKGIGRRFQLNGDLPMGEGKLTLVDDYGHHPREIAATLEALRQ-- 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGFHVLALKD--ALP 419
              + R + V          ++    D  +VLS  ++     V+ +G   +   D  AL 
Sbjct: 362 AWPDRRSVIVFQPHRY--TRTRDLFEDFVQVLSTVDVLILMDVYAAGETAIPGADGRALS 419

Query: 420 RSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
           R+I V       + E  + L   +   ++  DV++
Sbjct: 420 RAIRVRGQVDPVFVENWEELPQILAGIVLADDVIL 454


>gi|225627884|ref|ZP_03785920.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|254708105|ref|ZP_05169933.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M163/99/10]
 gi|254710474|ref|ZP_05172285.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis B2/94]
 gi|254714467|ref|ZP_05176278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M644/93/1]
 gi|254717365|ref|ZP_05179176.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M13/05/1]
 gi|256031968|ref|ZP_05445582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           pinnipedialis M292/94/1]
 gi|260169105|ref|ZP_05755916.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           F5/99]
 gi|261219196|ref|ZP_05933477.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261315608|ref|ZP_05954805.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261318046|ref|ZP_05957243.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261322257|ref|ZP_05961454.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261758612|ref|ZP_06002321.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|265989077|ref|ZP_06101634.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
 gi|225617047|gb|EEH14093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ceti str.
           Cudo]
 gi|260924285|gb|EEX90853.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M13/05/1]
 gi|261294947|gb|EEX98443.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M644/93/1]
 gi|261297269|gb|EEY00766.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis B2/94]
 gi|261304634|gb|EEY08131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M163/99/10]
 gi|261738596|gb|EEY26592.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. F5/99]
 gi|264661274|gb|EEZ31535.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella
           pinnipedialis M292/94/1]
          Length = 467

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 118/397 (29%), Gaps = 45/397 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
            L  ++    S+T+            +      VV++
Sbjct: 394 TLGGAVPFEISDTLAAAVAHATGDAGNDAAPEPVVLL 430


>gi|332530687|ref|ZP_08406618.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
 gi|332039855|gb|EGI76250.1| UDP-N-acetylmuramate [Hylemonella gracilis ATCC 19624]
          Length = 480

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 105/391 (26%), Gaps = 30/391 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLA 154
             LA          ++A+ G+ GKTTT  ML   L          +G    + G+   L 
Sbjct: 101 QWLAENVLQ--GRHVLAVAGTHGKTTTTSMLAWILEHAGLQPGFLVGGVPLNFGISARLG 158

Query: 155 RMPVDVDFGIFELGMSH--------------LGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
            M      G   +   H                + R      RP  A++  +   H   F
Sbjct: 159 GMSNRDQAGETGVPEQHRPLFIIEADEYDTAFFDKRSKFVHYRPRTAILNNLEFDHADIF 218

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
             +  I      +   +  +G +  N  +     +  +      ++  +      A  + 
Sbjct: 219 DDLAAIERQFHHLVRTVPASGRVVFNGLEESLARVLHQGCWSEQRSFGAASSDFQAQGEP 278

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
           + ++       +                   +A    + +       A            
Sbjct: 279 QDFEVLRHGVSVAHVQWKVGGVHNQLNALAAIAAAEHVGVTPAQAALALR-EFQNVKRRM 337

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
             +    +          F     +       ++  +     ++          LG M  
Sbjct: 338 EIRGVVSRDGGGITVYDDFAHHPTAIRTTLDGLRRQVGQARILAVFEPRSNTMKLGTMK- 396

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
                      L   L   N++     G    A +   P       ++++D L   + ++
Sbjct: 397 ---------AQLPWSLEDANLAFCHTGGLGWDAREALAPMGTRAQVADSIDELVSQVIAA 447

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              GD ++   SN  GF  +   LL+   A+
Sbjct: 448 ARPGDHIL-CMSNG-GFGGVHQKLLKALGAL 476


>gi|254491328|ref|ZP_05104508.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxidans
           DMS010]
 gi|224463457|gb|EEF79726.1| UDP-N-acetylmuramate--alanine ligase [Methylophaga thiooxydans
           DMS010]
          Length = 473

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/367 (19%), Positives = 133/367 (36%), Gaps = 37/367 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R       IA+ G+ GKTTT  ++   LS  +     +     +     + AR+ 
Sbjct: 105 LAELMRFSYG---IAVAGTHGKTTTTSLIAALLSEGELDPTFVIGGRLNS--AGSNARLG 159

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEG 216
               + + E   S           ++P IAV+T I   H++ +     ++ +   E    
Sbjct: 160 TG-RYLVAEADES-----DASFLYLQPMIAVVTNIDEDHMATYEGDFGKLKATFIEFLHH 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  DD   + L A+          ++G+ ++AD+QL    Q   QS+  V  
Sbjct: 214 LPFYGLAVMCLDDPVVKELLAEVTRP----FITYGQDEDADYQLVDLTQHQGQSFFTVVE 269

Query: 277 QG--KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +   +   +  +  G H A N    + +   L  ++    +AL  F     R        
Sbjct: 270 KHSGERYPITLNMPGLHNALNATAAMAVARNLAVNIAACQQALLKFDGIGRRFNLLGQVD 329

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G    + + Y  +P  + A ++      P        V+         ++    D A 
Sbjct: 330 AEGGKATLIDDYGHHPTEIAATLAATRGGWPDN----RVVVVFQPHRYSRTRDLFEDFAH 385

Query: 395 VLSLYNISHVW-----------LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSL 441
           VLS   +  +            ++G    +L  A+     V   ++E  + LF  +   L
Sbjct: 386 VLSA--VDVLVMLEVYPAGESKIAGADARSLCRAIRLRGQVEPVFAENQEELFALLPGLL 443

Query: 442 VDGDVVV 448
            DGDV++
Sbjct: 444 KDGDVLL 450


>gi|300112944|ref|YP_003759519.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538881|gb|ADJ27198.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus watsonii C-113]
          Length = 477

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 139/415 (33%), Gaps = 46/415 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD     ++ G  +VVV++ +  +   +      +  V      L +L           
Sbjct: 68  GHD--SQHIE-GCDVVVVSSAIDENNPEVRAARGRLIPVVPRAEMLAELMRFRYG----- 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IA+ G+ GKTTT  ++   L         +     +    +         ++ + E   
Sbjct: 120 -IAVAGTHGKTTTTSLIAGILGEANLDPTFVIGGQVNS---IGANSRLGKGEYLVAEADE 175

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S          L++P +AVIT +   H+  +      + +A  E    L   G   +  D
Sbjct: 176 S-----DASFLLLQPLLAVITNVDADHMDAYGGDFIALKAAFLEFLHHLPFYGLAVVCLD 230

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--VQLQGKSMEVVHH 286
           D     L        +    ++G  K AD+QL+  KQ   ++  +     +   + VV +
Sbjct: 231 DPVLRELLPDIGRPVL----TYGTCKEADYQLQALKQIRARTQFQVARPGKDNWLTVVLN 286

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H A N L  + +   L        + L  F     R + Y          L+ + Y
Sbjct: 287 LPGAHNALNALAAIAVAHELGVADSAIQRFLKGFSGIGRRFQCYGEIATPAGKVLLVDDY 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P  + A +  +    P        V+         ++       +VLS   +  ++L
Sbjct: 347 GHHPRELAATLEAIRVGWPER----RLVVIFQPHRYTRTRDLFEAFIQVLSQ--VDVLFL 400

Query: 407 S-----------GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
                       G    AL  A+     V     E  + +   +   L +GD+++
Sbjct: 401 LEVYPAGEVPIGGADSRALWQAIQARGQVRPILVEDKEIIEEMLLDLLREGDLLL 455


>gi|258622767|ref|ZP_05717785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
 gi|258584955|gb|EEW09686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM573]
          Length = 451

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 120/369 (32%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMVA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +      +     G+ +       +        +  +    +  +V    +
Sbjct: 223 DEALADVFKRGCWSETEFSGEQGEWQA------EKITADGSQFHVLLHGERVGQVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +    + A +A           KR      +     + + +  
Sbjct: 277 GDHNVSNALMAIAAARHVGVAPELACEA----LGLFVNTKRRLELKGEINGVAVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P +++  +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 333 HPTAIE--LTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADSVY 384

Query: 406 LSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCAQPAQISANMDEFVAMIAKEAKAGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLMAALQQK 451


>gi|94312061|ref|YP_585271.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cupriavidus
           metallidurans CH34]
 gi|118595679|sp|Q1LIM4|MURD_RALME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|93355913|gb|ABF10002.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Cupriavidus
           metallidurans CH34]
          Length = 504

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/315 (17%), Positives = 94/315 (29%), Gaps = 47/315 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      T  + PH A +  +   HL     +E  A+AKA IF   EK 
Sbjct: 176 DVWVLELSSFQL----EYTFSLAPHAATVLNVTQDHLDWHGSMEAYAAAKARIFGPAEKG 231

Query: 221 GTIFLNYDDSFFELLKAK-----------SHALGIKTIYSFGKSKN-------------A 256
               LN  D     +  +               G   +   G                  
Sbjct: 232 CLQVLNRQDPLTMNMARRGTTLVTFGTDLPETPGSYGVLREGGMPWLVLAEPDTEADAEQ 291

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             + RK    +  + + V+ +        H  G H A N +  L +   +   ++  +  
Sbjct: 292 KPRRRKKDDVAADAVVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPLNALLHG 351

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  +        R             D+S   N  +          ++      +  VL 
Sbjct: 352 LREYRG---EPHRVEWVATIDEVEYFDDSKGTNVGAT---------VAALSGLDKHVVLI 399

Query: 377 DMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLF 434
              E  G+        +A+         V L G    AL++AL      +  + +++   
Sbjct: 400 AGGEGKGQDFSPLVAPVAQYARA-----VVLIGKDAGALREALGATGKPLIDAGSLEEAV 454

Query: 435 LFIQSSLVDGDVVVV 449
               S    GDVV++
Sbjct: 455 EKSASLAEAGDVVLL 469


>gi|254520514|ref|ZP_05132570.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
 gi|226914263|gb|EEH99464.1| UDP-N-acetylmuramate-L-alanine ligase [Clostridium sp. 7_2_43FAA]
          Length = 457

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 114/365 (31%), Gaps = 33/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +    +       +AI+G+ GKTT   ML+            +      +     
Sbjct: 101 EFLGLIMKGHKYN-----VAISGTHGKTTCTSMLSHVTLKADLDPTILVGGELDV----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P+I VI  I   HL  +  +  I     +
Sbjct: 151 ---IDGNFKIGNSEYFITEACEYKESFLKFYPYIGVILNIDADHLDYYRDLNHIKETFEK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G +    +D     +  K+    I    + G  +  +            S+ 
Sbjct: 208 FSNIIPSDGYLIGYCEDENVNEILNKAKCNTISYGINKGDVRATNISFDNK---GRASFT 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +   +  +V  +  G H   N L T+ +  I      + I+ L        R      
Sbjct: 265 VCKDNDELFDVTLNTTGKHNILNALSTICVGLIFNIPYTSIIEGLRECKGAHKRF---EY 321

Query: 333 ALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                  T+ID+  +         + A++    ++ +   PH   R   +  D  E    
Sbjct: 322 KGEFNGATIIDDYAHHPVEIKATLDTATIIPHKNIYAVFQPHTYTRTKTLFEDFTECFSE 381

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
                  L ++ +        +   +   L DA+  + I      + +    ++++ + +
Sbjct: 382 VDEL--LLMDIYAAREKDTGIV---NSEQLGDAIRAKGIKCTNIHSHEQAANYLKNVVSN 436

Query: 444 GDVVV 448
            D+++
Sbjct: 437 DDIIL 441


>gi|160896918|ref|YP_001562500.1| UDP-N-acetylmuramate--L-alanine ligase [Delftia acidovorans SPH-1]
 gi|229486487|sp|A9BUK7|MURC_DELAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160362502|gb|ABX34115.1| UDP-N-acetylmuramate--alanine ligase [Delftia acidovorans SPH-1]
          Length = 477

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/436 (17%), Positives = 139/436 (31%), Gaps = 45/436 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH      ++ GA  VV +T + +    +       IPV         +  LA   R + 
Sbjct: 56  GH--AAAHIE-GADAVVTSTAVQSDNPEVLAARERKIPVV----PRALM--LAELMRFKQ 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++T  L+        +     +              D+ + E
Sbjct: 107 G---IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNS---AGANAKLGQGDYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
              S    +  L     P +AV+T I   H+  +             F   +   G   +
Sbjct: 161 ADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKGAFVDFLHRMPFYGRAIV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D      +  +         ++      A     +                  ++VV 
Sbjct: 216 CVDSPAVREILPQVARPVTTYGFAEDAQVRALNVRAEAGSMHFTVRRSNGQSYPDLDVVL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L  + +   L    D  ++A   F     R +RY   A   G    + +
Sbjct: 276 SLPGEHNVLNALSAVAVAMELEISDDALLRAFESFKGVGRRFQRYGELAAADGGSFTVID 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNI 401
            Y  +P  M A ++      P        VL         ++    D   +  +     +
Sbjct: 336 DYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRYSRTRDCFEDFVKVIGLADAVLL 391

Query: 402 SHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G          +L  AL  +  V   + E +  L   I  +  DGDV++   + 
Sbjct: 392 TEVYAAGEAPVVAADGRSLARALRVAGRVEPVFVENVAELPAAIAVNARDGDVLLCMGAG 451

Query: 454 SCGF--YRLINLLLEE 467
           S G    +L+ +L ++
Sbjct: 452 SIGAVPGKLVEMLQKQ 467


>gi|157828210|ref|YP_001494452.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932913|ref|YP_001649702.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           Iowa]
 gi|166224724|sp|A8GRB9|MURC_RICRS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029027|sp|B0BWS0|MURC_RICRO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157800691|gb|ABV75944.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908000|gb|ABY72296.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia rickettsii str.
           Iowa]
          Length = 485

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 130/419 (31%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L  +     I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +     N      I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNNAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMLCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +        +L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|315637192|ref|ZP_07892414.1| conserved hypothetical protein [Arcobacter butzleri JV22]
 gi|315478559|gb|EFU69270.1| conserved hypothetical protein [Arcobacter butzleri JV22]
          Length = 332

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L  + G  +      F+  I  +   +   + F  +K    D ++ I  A++ GA 
Sbjct: 3   ISSILDIVDGKLLNSPSISFIYSIKTNVSKVKEGDLFI-VK----DPNE-IEIALKNGAF 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            +++  + +  I    I    V+++  A+ KL   +       
Sbjct: 57  AILIEENHL--ILDNEIAWIKVENIDLAIIKLIRFSLSTKNLK 97


>gi|256160167|ref|ZP_05457861.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           M490/95/1]
 gi|256255373|ref|ZP_05460909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ceti
           B1/94]
 gi|261222575|ref|ZP_05936856.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|265998540|ref|ZP_06111097.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
 gi|260921159|gb|EEX87812.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           B1/94]
 gi|262553164|gb|EEZ08998.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella ceti
           M490/95/1]
          Length = 467

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 118/397 (29%), Gaps = 45/397 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
            L  ++    S+T+            +      VV++
Sbjct: 394 TLGSAVPFEISDTLAAAVAHATGDAGNDAAPEPVVLL 430


>gi|256545187|ref|ZP_05472553.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
 gi|256399228|gb|EEU12839.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Anaerococcus vaginalis ATCC 51170]
          Length = 463

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 114/393 (29%), Gaps = 30/393 (7%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLG-ALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +  N + + +   L IPV       G  L  L    +       IA++GS GK+TT  M
Sbjct: 79  AIAENNEELVAARKLDIPVV----SRGVFLGGLMKNYKNS-----IAVSGSHGKSTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++  L +  K    +   +      +       D D  + E          +      P 
Sbjct: 130 ISKILMNSTKNPTILLGGDLDE---IEGNVHVGDKDILVTEACEYKGNIRYYY-----PS 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  +  I +I            K     LN ++     L   +    + 
Sbjct: 182 IGIILNIDEDHLDYYKDINDIVETFKFYLRNQSKDSKTILNLNEEN-NKLVIDAVQGELI 240

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T        + +     + +  +  +  +   G         +G H   N   ++     
Sbjct: 241 TYGQDNPDADYNATNISFDESGKPRFDLIMKNGDVEHFELAILGRHNINNACASIIATLE 300

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVL 360
              D+ T  K +  +   E R +      +                N N  +      ++
Sbjct: 301 SGVDIKTIKKNIQSYTGLERRMQLMGNVNDCNIILDYGHHPSEIQVNLNALAEHTKGRLI 360

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-P 419
               PH   R   +  +  +  + +    I      +                + DAL  
Sbjct: 361 CVWQPHTYTRTKRLFNEFVKCFDEADEVIITDI-FAAREPFDPSI----SSKDVVDALIK 415

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                 Y  T + +  ++ S +   D V+V  S
Sbjct: 416 TGKSAKYIPTFEKVKEYLLSDIKKDDQVIVTGS 448


>gi|308185660|ref|YP_003929791.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
 gi|308056170|gb|ADO08342.1| L-alanine adding enzyme, UDP-N-acetyl- muramate:alanine ligase
           [Pantoea vagans C9-1]
          Length = 492

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/400 (15%), Positives = 116/400 (29%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPELVAAREQRIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGTHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDVVIRDLIPRV----GRHITT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM------------- 296
           +G S +AD ++  ++Q   Q    +  Q K+   +                         
Sbjct: 250 YGFSDDADLRIENYEQSGAQGHFTLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGI 309

Query: 297 -LMTLGIVSILTAD--VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +               +       P  G+        + G      ++      + 
Sbjct: 310 EDNAILAALESFQGTGRRFDLLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                ++    PH   R   +  D   +       H+D+  +L +Y+     + G    +
Sbjct: 370 WPDKKLVMVFQPHRYSRTRDLFDDFANVLS-----HVDVLLMLDVYSAGETAIPGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L  A+     V        D L   +   L   D+++V+ 
Sbjct: 425 LCRAIRNRGKVDPILVPEHDALPEMLAPLLSGNDLILVQG 464


>gi|329896223|ref|ZP_08271401.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
 gi|328921894|gb|EGG29261.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium IMCC3088]
          Length = 452

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 135/419 (32%), Gaps = 41/419 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G    VV   + ++I   S P +  +++L          R R    ++A++G+
Sbjct: 69  VGNAMSRGVP--VVEALLNSNIPYTSGPQWLGENLL----------RDRW---VLAVSGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
            GKTTT  +L   L          IG    + GV   L +      F + E         
Sbjct: 114 HGKTTTSSLLAWMLEEAGLQPGFLIGGVTANFGVSARLGQ----DPFFVIEADEYDTAFF 169

Query: 176 RFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                     P   ++  +   H   F  +E+I      +   +   G +      +  +
Sbjct: 170 DKRSKFLHYHPRTLILNNLEFDHADIFDSLEDIQRQFHHLLRVVPSLGQVIYPVGVAAID 229

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            + A+      +   +FG   +A +Q +   Q      +              G   +  
Sbjct: 230 DVLARGLWAQSE---TFGADASAQWQYQWRNQGRGDFRITQGNNEWEGSTPLSG--DYNL 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +     +    + +I AL+ F   + R +             + + +  +P ++
Sbjct: 285 SNALAAIIAARHVGVSPEHSIAALATFKNTKRRQELIAEVGG----IQVIDDFAHHPTAI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +  +  L     +       VL        +    H +     +       WL   ++  
Sbjct: 341 RLTLEGLKASHHNS----RLVLIIEPRSNTMRMGVHANALADATRPADQCYWLRAKNMG- 395

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GF-YRLINLLLEEFP 469
             D     +     + +D L   +   L   DVV V  SN    GF  +L+  L + + 
Sbjct: 396 -FDLTSDLVGGQVFDDVDQLVAKLVPELAPTDVV-VCMSNGDFQGFKDKLVQALKDTYE 452


>gi|218290830|ref|ZP_03494899.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239188|gb|EED06389.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 463

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 82/404 (20%), Positives = 143/404 (35%), Gaps = 49/404 (12%)

Query: 64  GAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T +           +L+IPV         +  LA     R     IA+TG+ 
Sbjct: 63  GADIVVHSTAVKQDNVELQAARALNIPVIH----RSEM--LARLMDDRVG---IAVTGAH 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   +         I          L          F + E   S    + +
Sbjct: 114 GKTTTTSMIAFTMEQNGLDPTFIVGGVVAD---LGDNAKAGKGPFVVAEADESDGSFLHY 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                RP IAV+T + P HL ++    E +  A       +   G + ++ DD     L+
Sbjct: 171 -----RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQIPSEGLLVMSADDDKLRELR 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQN 295
           +         + ++G +++AD   R  +     S  +V + G+ +  +     G H   N
Sbjct: 226 SA----ARCRVVTYGFAEDADITARHVELGDRASRSDVLVNGEFVGTLQLALPGKHNVLN 281

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +    + A  ALS FH  + R +            LI + Y  +P  ++A
Sbjct: 282 ALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVAEMGG----VLIVDDYAHHPTEIRA 337

Query: 356 AISVLS--------QISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWL 406
            I+              P    R   +  +  +  GE  +    D+        I     
Sbjct: 338 TIAAAKSTGRRIVAVFQPQRYTRTFFLFEEFAKAFGEADEVILCDIYSPAGERKID---- 393

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            G     L   + R  + H  Y  T D +  ++  ++  GD+V+
Sbjct: 394 -GVSAARLASEIARMSNPHTRYIPTHDDVIEYLAQNVRPGDLVL 436


>gi|148985270|ref|ZP_01818493.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922468|gb|EDK73587.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptococcus
           pneumoniae SP3-BS71]
 gi|301799723|emb|CBW32288.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           pneumoniae OXC141]
          Length = 446

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 132/391 (33%), Gaps = 51/391 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDV--LGALNK------LAVAARLRSKATIIAITGSVGKT 120
           +++ +    + +  IP    ++     AL K          A L S+A II ITGS GKT
Sbjct: 68  LLDEEFALMVKNPGIPY---NNPMIEKALAKGIPVLTEVELAYLISEAPIIGITGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLT 179
           TT  M+   L++  +     G  + +IG P +   +   D D  + EL    L  ++   
Sbjct: 125 TTTTMIGEVLTAAGQH----GLLSGNIGYPASQVAQTASDKDTLVMELSSFQLMGVQEFH 180

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P IAVIT + P H+       E  +AK  I   +     + LN++           
Sbjct: 181 ----PEIAVITNLMPTHIDYHGSFSEYVAAKWNIQNKMTAADFLVLNFNQDLTSK----- 231

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                    +           +      E   +  + +           G H  +N L T
Sbjct: 232 ---------TEATVVPFSTLEKVDGAYLEDGQLYFRGEVVMAANEIGVPGSHNVENALAT 282

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +  +   D  T  + LS F   + R    +   +       ++S + N  +       
Sbjct: 283 IAVAKLRGVDNQTIKETLSAFGGVKHRL---QFVDDIKGVKFYNDSKSTNILA------T 333

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
              +S     + + + G     G    +   +L   +    +  + + G     +K A  
Sbjct: 334 QKALSGFDNSKVVLIAG-----GLDRGNEFDELVPDI--TGLKKMVILGQSAERVKRAAD 386

Query: 420 RSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           ++   +  +  +             GDVV++
Sbjct: 387 KAGVAYVEATDIADATRKAYELATQGDVVLL 417


>gi|86160190|ref|YP_466975.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|109892690|sp|Q2IG30|MURC_ANADE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85776701|gb|ABC83538.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 458

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 118/404 (29%), Gaps = 50/404 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  AV++       +   V       IPV         +  LA   RL+     +AI GS
Sbjct: 73  ISSAVKR-------DNPEVLEARRRKIPVI----PRAEM--LAELMRLKYG---VAIAGS 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L+        +     +              D+ + E   S      
Sbjct: 117 HGKTTTTSMAAHLLAHAGLDPTAVVGGKVN---AFGSNAKLGKGDYMVVEADES-----D 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IA++T I P HL ++   + +     +    +   G   L  D    + + 
Sbjct: 169 GSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSIL 228

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
                     + ++G+S  AD++    +        +  +            +G H A N
Sbjct: 229 PDVEK----RVVTYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVAMVGRHNALN 284

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +        +AL  F   + R                        A+++ 
Sbjct: 285 ALAVIALGDEMGIPPLVTREALRSFQGVQRRFTVRGEVAGVTVVDDYGHHPAEVKATLQG 344

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH-- 410
           A     +                      ++    + A   +  ++   + ++ +G    
Sbjct: 345 AREAFKRRVVCLFQPHRY---------TRTRDLMAEFATAFNDADVLLLTDIYAAGEEPI 395

Query: 411 ----VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
                  L +A+    H  V        L    +  +  GD+V+
Sbjct: 396 PGATAANLAEAIRAWGHRDVTVVP-RAELARAARERIRPGDLVL 438


>gi|301165433|emb|CBW25004.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 460

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 108/369 (29%), Gaps = 33/369 (8%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIA+ GS G+TT   M+   L    K     G+  +       L     ++D+ + E+ 
Sbjct: 112 PIIAVCGSKGRTTVAHMIGYTLKLDGKNVFIGGTSESSFIEYSMLPN-KDEIDYVVVEVS 170

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                      +   P + V T I+  +   +F+ + E    K  I + L    T+ +N+
Sbjct: 171 A----VQMRKLNNFHPKLVVFTNISENYPEKHFNSVGEYIETKLSIIKTLSPDDTLVVNF 226

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D          ++            +     +++       +    +    +        
Sbjct: 227 DQLANNTFFRNANCQTYWYSRKSFVTMGVINEIQGTHFHDRRIHSNINYHSEFKVNQMRI 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G +  +N+L  +     L     +    ++ F             L         + YN
Sbjct: 287 VGQNNRENLLAAVTACKALEVSDKSIQTCIAKFPGIP-------HRLEFLMEKNGVDFYN 339

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            + A       + + I    +   +   G   E  +        +       +   V L 
Sbjct: 340 DSKAE--KMEDLCTSIKSFKKQVILIAGGKDVEDFDFEPYAPEII------EHTRVVVLV 391

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK----SS--------NSC 455
           G     +  AL          + +   L        GDV+++     +S           
Sbjct: 392 GESKERMNRALQEHPQTFIVGSFEESILLAYQKSRTGDVILLSPGNEASDFFRDYEERGS 451

Query: 456 GFYRLINLL 464
            F +L+  L
Sbjct: 452 YFKKLVYQL 460


>gi|238650471|ref|YP_002916323.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
 gi|259509781|sp|C4K124|MURC_RICPU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238624569|gb|ACR47275.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia peacockii str.
           Rustic]
          Length = 485

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 129/419 (30%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +              ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KLTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L  +     I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDEITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +     N      I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNNAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMLCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +        +L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|253998170|ref|YP_003050233.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
 gi|253984849|gb|ACT49706.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylovorus sp.
           SIP3-4]
          Length = 460

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/388 (18%), Positives = 131/388 (33%), Gaps = 46/388 (11%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           + +   ++  ++ +    +  V DV     +L    R RS   +IAITG+ GKTT   ++
Sbjct: 78  VALAEPEVQQALANG---IQVVGDV-----ELFAQFRPRSS-KVIAITGANGKTTVTTLV 128

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG----IFELGMSHLGEIRFLTHLV 182
                +             +IG+P+  A   V+ D      + EL    L      T  +
Sbjct: 129 GEMCKAAGL----KTVVAGNIGLPVLDALRQVETDGAPDVYVLELSSFQL----ETTSSL 180

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P  A +  +   H+  + G+ E A+AKA I +G         +           ++ AL
Sbjct: 181 APDAAAVLNVTEDHMDRYPGMPEYAAAKARILKGAGVQVLNREDAWC--------RNMAL 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + +FG     +          +Q W+                G H A N L  L +
Sbjct: 233 PDQPMVTFGLDLPVESHAYGLLALRDQLWLAQGAHPILHVEELRIPGLHNAANALAALAL 292

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              +  D       L  F     R        +       D+S   N  +  AA+     
Sbjct: 293 CRAIGVDWAPLQHVLREFKGLPHRV---EWVADLHDIAFYDDSKGTNVGATCAAL----- 344

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS- 421
                  + + + G   +  + S              N   V L G     ++ AL  S 
Sbjct: 345 --AGLPRKVVLIAGGDGKGQDFSP------LREPVDQNARAVVLIGRDATLIEAALQGSP 396

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   ++E+M+       ++ + GD V++
Sbjct: 397 VPRLHAESMEDAVQQAYAAALAGDAVLL 424


>gi|296160540|ref|ZP_06843356.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889289|gb|EFG69091.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. Ch1-1]
          Length = 467

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 139/403 (34%), Gaps = 39/403 (9%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T + +    +       IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L++       +      +      AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               + P I VIT I   H+  +             F        I +   D        
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPN---VK 223

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
           +      K I  +G + +A  +    +    +       +  +  ++V +  G H  QN 
Sbjct: 224 EILPFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDIVLNLPGEHNVQNA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKA 355
           L  + I + L        +AL+ F+    R +RY    ++    T    +   +      
Sbjct: 284 LAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVSSEGKTNGAYTLVDDYGHHPV 343

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF--- 409
            ++     +      R  VL         ++    D  +VLS  +   ++ V+ +G    
Sbjct: 344 EMAATVAAARGAFPGRRLVLAFQPHRFTRTRDCFEDFVKVLSTVDALVLTEVYSAGESPI 403

Query: 410 ---HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                 AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 404 VAADGRALARALRVAGKVEPVFVDTVDEVPDALSAIVRDGDVV 446


>gi|307731071|ref|YP_003908295.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585606|gb|ADN59004.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1003]
          Length = 467

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 143/416 (34%), Gaps = 49/416 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      K I  +G + +A  +    +    +       +  +  ++  + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGFAPDAQVRAVNVEARDGKMHFTAMREDAAPLDITLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLI 342
            G H  QN L  + I + L        +AL+ F+    R +RY                +
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQTRGAYTL 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  M A ++      P        VL         ++    D  +VLS  +  
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDAL 390

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            ++ V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 391 VLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAIVRDGDVV 446


>gi|227503281|ref|ZP_03933330.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
 gi|227075784|gb|EEI13747.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium accolens
           ATCC 49725]
          Length = 487

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 128/421 (30%), Gaps = 41/421 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +    +IP+    D+L AL +           T + + G+ GKT+T  M   A+
Sbjct: 86  DNPELVAARGNNIPLIRRSDLLAALME---------GHTQVLLAGTHGKTSTTSMAVSAM 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +          +            +  + E   S    +R+      P IAVI
Sbjct: 137 QHAGLDPSFAIGGQ----LNRAGTNAHGGTGEAFVAEADESDASLLRYS-----PDIAVI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHALGIKTIY 248
           T   P HL  F   +      A+  + +        +  +D     +  ++ + GI  I 
Sbjct: 188 TNAEPDHLDYFHSADAYFKVFADFADLVTPDTGYLVVCAEDEHAAEIGEQALSRGINVIG 247

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM----------EVVHHGIGYHMAQNMLM 298
             G  K     +      + +      +                      G+HM  N + 
Sbjct: 248 YGGAEKARTTSVPLAATLTAEETTAAGMACTVQLSLPGVEQSVSYQLQIPGHHMVLNSMA 307

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L    +   +  T  + L+ F     R +       QG    + + Y  +P  + A + 
Sbjct: 308 ALIAGVLSGGEPSTIAEGLADFSGVRRRFEYRGSVDWQGGSVRVFDDYAHHPTEVAAVLR 367

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
                          +      +   +  F  + A+ L+L + + V            G 
Sbjct: 368 AARAKVAAEGNGGRVIACFQPHLYSRTMEFDAEFAQALALADAAVVLDIYGAREQPVEGI 427

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               + + +P  + V +          + S    GD+++   + S     +   +L+E  
Sbjct: 428 TSRIITNKMPEEMEVIFEPDFSAAAKDVVSIAQPGDIILTIGAGSITL--VAAEILDELR 485

Query: 470 A 470
           A
Sbjct: 486 A 486


>gi|212712758|ref|ZP_03320886.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
 gi|212684674|gb|EEB44202.1| hypothetical protein PROVALCAL_03855 [Providencia alcalifaciens DSM
           30120]
          Length = 472

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 79/426 (18%), Positives = 146/426 (34%), Gaps = 51/426 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 64  ASVVVVSTAISAENPEIQAAKELRIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFVNGGLVKS---AGTHARLGSSRYLIAEADESDASFLH-- 169

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 170 ---LQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGRAVMCIDDPVIRSLLP 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S++AD ++ K++Q      +   +     + VV +  G H A N 
Sbjct: 227 KI----GRYITTYGFSEDADVRITKYEQKGNQGFFTIAREGMPELTVVLNAPGRHNALNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +    D    + AL  F     R         R    +    ++ + Y  +P 
Sbjct: 283 TAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVNGKEGDVMLVDDYGHHPT 342

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSG 408
            + A I      +   + R + V          ++  + D A VL   ++     V+ +G
Sbjct: 343 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLGQVDVLLMLEVYSAG 398

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                     +L   +     V   +    + +   +   L D D+++V+ + + G  ++
Sbjct: 399 EKPVPGADSRSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDDNDLILVQGAGNIG--KI 456

Query: 461 INLLLE 466
              L E
Sbjct: 457 AKNLAE 462


>gi|82701657|ref|YP_411223.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
 gi|82409722|gb|ABB73831.1| UDP-N-acetylmuramate [Nitrosospira multiformis ATCC 25196]
          Length = 456

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/407 (14%), Positives = 112/407 (27%), Gaps = 43/407 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              +  ++  +S P +  ++VL                 ++A+ G+ GKTTT  ML    
Sbjct: 79  EEILDRNLPYISGPQWLSENVLR-------------DKWVLAVAGTHGKTTTSSMLA--- 122

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAV 188
             ++      G     I     ++    +  F + E                   P  A+
Sbjct: 123 WILEYAGMEPGFLIGGIPQNFGISARLGNSGFFVIEADEYDTAFFDKRSKFVHFHPRTAI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  +EEI      +   +   G I  N  +   E +  K     ++ I 
Sbjct: 183 LNNLEYDHADIFRNLEEIEQQFHHLVRVVPGKGLIVSNGQEENLERVLRKGCWTPVERIG 242

Query: 249 SF--GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                ++              E     +         ++       A++  + +      
Sbjct: 243 VANGWEADVLTDGAVAVSFLGESQGTLLWELLGKHNRMNALAALAAARHAGVAVKAGIAA 302

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
            A+     + + V             A +        +   +     +    +  + +  
Sbjct: 303 LAEFRNVKRRMEVKGITRDITVYDDFAHHPTAIRTTIDGLRSRVKGARIIAVLEPRSNTM 362

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--VLALKDALPRSIHV 424
             G     L D                   SL     V+    +      +  LP     
Sbjct: 363 KMGVWKESLAD-------------------SLTGADVVFCYAANLGWDLPQALLPLGEKA 403

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              E +D L   I +    GD V++  SN  GF  +   LL    A+
Sbjct: 404 VAFEELDQLIAAITAYAQPGDHVLI-MSN-AGFGGIHEKLLTRMAAV 448


>gi|157737468|ref|YP_001490151.1| hypothetical protein Abu_1222 [Arcobacter butzleri RM4018]
 gi|157699322|gb|ABV67482.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
          Length = 332

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 8/103 (7%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
              +L  + G  +      F+  I  +   +   + F  +K    D ++ I  A++ GA 
Sbjct: 3   ISSILDIVDGKLLNSPSISFIYSIKTNVSKVKEGDLFI-VK----DPNE-IEIALKNGAF 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            +++  + +  I    I    V+++  A+ KL   +       
Sbjct: 57  AILIEENHL--ILDNEIAWIKVENIDLAIIKLIRFSLSTKNLK 97


>gi|145356732|ref|XP_001422580.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582823|gb|ABP00897.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 680

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 55/158 (34%), Gaps = 28/158 (17%)

Query: 7   FHDLLQ--AIQGHSIG--IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             ++ +   +    I         ++GI+ D  ++   + F                A +
Sbjct: 101 LREIFEDAGVDARWIALEDDEDVEISGIANDVNALLSGDLFVC------------GSARE 148

Query: 63  KGA----------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATI 110
            GA             V      A  G   +P+  V+DV  AL  +A           T 
Sbjct: 149 GGAMEDAAREAVAAGAVAVVSERAIEGLADVPIAVVEDVDEALADIARVFYGDPSKALTA 208

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           IA+TGSVGKTTT  ++             +GS  N++G
Sbjct: 209 IALTGSVGKTTTSYLVKAVFEEADIRMGLVGSNGNYVG 246


>gi|319778584|ref|YP_004129497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
 gi|317108608|gb|ADU91354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Taylorella equigenitalis
           MCE9]
          Length = 443

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 29/380 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L           +IA++G+ GKTT   MLT  L S       +             AR
Sbjct: 81  QWLGEHVLRSQH--VIAVSGTHGKTTCTSMLTHILQSAGLNPNFLIGGIAKD--FNISAR 136

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 F + E                    + A+I  I   H   F  ++ I +     
Sbjct: 137 FNSQSKFFVIEADEYDTAFFDKRSKFVHYHANTAIINNIEYDHADIFPDLKAIENQFHNF 196

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L + GT+ +  +D   + + ++        I   G     +           +    
Sbjct: 197 VRILPRNGTLIVPKNDETIDRILSRGLYCQKIEIGDGGTWSYVNISDSTQNFDILKDGQN 256

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V      M  +H+             +G+   L  +       +       G        
Sbjct: 257 VGHINWEMTGLHNIKNALSCIAAADVIGVKPALAIEALNNFSGIKRRMEVVGNPNN---I 313

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                F     +       ++  +     I+          LG M +             
Sbjct: 314 TIYDDFAHHPSAIATTIDGLRKKVGDPRIIAVFEPRSNTMKLGTMAKFLPE--------- 364

Query: 394 EVLSLYNISHVWLSGFHVLALK------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              +L N   +++ G             +      +VH    +D L   I   +  GD V
Sbjct: 365 ---ALKNADQIYIYGELHGKHALGWTPEEIFGSQTNVHIYHEVDKLKDAILEEVKSGDHV 421

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           V+  SN   F  L   L+++
Sbjct: 422 VI-MSNGS-FQGLHKKLIKD 439


>gi|227535241|ref|ZP_03965290.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187125|gb|EEI67192.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 459

 Score = 55.3 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 92/321 (28%), Gaps = 42/321 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + EL    L         + PHIAV+T I  AHL          +AK  I     
Sbjct: 161 KDDTIVAELSSFQL----CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N+D      L  +  +      +S   ++ A  QL       +          
Sbjct: 217 PDDYFIMNWDLPEMHELAKQ--SKAQIVPFSRKNAEGARAQLIDGWLTFDG-------DR 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N L  +  V +     D   + L  F   + R +       +  
Sbjct: 268 IMKASEMQIPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGR-- 325

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             + ++S   N  +   A++   Q      G     L  M  +              L  
Sbjct: 326 -RVYNDSKATNVEAATVALNAFDQPIVWLAGGLDRGLP-MDAL------------TPLVK 371

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-- 452
            ++  + + G     +        + V  +E +             GDV+++    +S  
Sbjct: 372 KHVKSMVVFGQTAPLMGKIAKDAGVPVQTTENVMTAVPLAYEVSRPGDVILLSPAAASWD 431

Query: 453 -------NSCGFYRLINLLLE 466
                      F +++N L  
Sbjct: 432 QYPNFEVRGDNFIKVVNQLKA 452


>gi|325959935|ref|YP_004291401.1| Mur ligase middle domain-containing protein [Methanobacterium sp.
           AL-21]
 gi|325331367|gb|ADZ10429.1| Mur ligase middle domain protein [Methanobacterium sp. AL-21]
          Length = 486

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 72/494 (14%), Positives = 139/494 (28%), Gaps = 61/494 (12%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAI-------KGPHYDG 53
           M  L T   L   I G   G  P   + GI        P +   A+       KG     
Sbjct: 1   MTELTT-SYLANKIDGKLTG--PDIVIQGIFTFLNHAKPGD---AVIRHWIDEKG----- 49

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIG---SLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
              +  A  +G   VV       ++     L  P+     +     +LA A  LR     
Sbjct: 50  ---VEIARNRGVSCVVTQNPKGDAVKTAQELDFPLIITPKI-----ELANAFALRWSIEK 101

Query: 111 IA-------ITGSVGKTTTKEMLTIALSSIKKTYAC------IGSYNNHIGVPLTLARMP 157
            A       +TG+ GK+TT  M+   L+                +      V   ++R  
Sbjct: 102 FAPGSIRVVVTGTNGKSTTTHMIQNILNHAGYNCYTNTDSKSEFNTLIDPVVSDQISRFK 161

Query: 158 VDVDFGIFELG---MSHLGEIRFLTHLV--------RPHIAVITTIAPAHLSNFSGIEEI 206
                 I  +        G +  L            +P + V+T I   H+   + IEE 
Sbjct: 162 AKTKKPIDAMVVEVSEVQGWMDKLMKDHAYLMTDAVKPDVLVLTNITMDHIGLINSIEET 221

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +        +EK+        +    LL+  +  +          S   DF        
Sbjct: 222 YAEIYGALAAVEKSCQNNYAVLNYDDPLLRKMAGEIVTCPSIISHGSVEPDF---NPDLT 278

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   +  + +             H  QN +  +G    L  D       +  + P   R
Sbjct: 279 VKSDGIHHEDELFLKMEDLPFKSKHFLQNTMAAIGACLALNIDTSAIKAGILSYSPLNRR 338

Query: 327 GKRYRCALNQGFFTLID-ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                           + +   A   S          I     G R  V+  +      S
Sbjct: 339 FSILYQEPLIIDDFAHNPDGITATIKSASEMSEGTLIILFAVRGSRGEVINRLNAEALAS 398

Query: 386 QSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIHVHYS--ETMDGLFLFIQSSL 441
               +D + +++  +  +  +       + +   +     + ++  E ++    +  ++ 
Sbjct: 399 ALQAVDYSLIITSSSEVVDELNTVHASEIEVVRKVMDEHKLEHTFKEELEDALNYTLNTA 458

Query: 442 VDGDVVVVKSSNSC 455
              D +++  +   
Sbjct: 459 KKEDTILLIGAQGM 472


>gi|123441030|ref|YP_001005019.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122087991|emb|CAL10779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 444

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 123/377 (32%), Gaps = 46/377 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV 160
               ++A ++AITGS GK+T   ++     +        G+       +   L     + 
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALNLLKQLTLQKHEN 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L      T  +    A I  +   H   +  G+++  +AK  ++E  + 
Sbjct: 159 QLVVLELSSFQL----ETTSSLHASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKV 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +                      SFG     D       +   + W+ V+ +  
Sbjct: 215 CVVNADDALTMPVR--------GADNRCISFG----VDVGDYHLNKQQGEIWLRVRGEKV 262

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++KAL+ F     R    +        
Sbjct: 263 LNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLPHRF---QLVFEHNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGL-----PLDGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +I  ++  G     L +  P    +   ETM+   + +  SL  GD+V++    +S    
Sbjct: 370 HI-KIYCFGRDGEQLAELRPEVSQLT--ETMEQAMVLLAKSLAPGDMVLLSPACASLDQF 426

Query: 453 -----NSCGFYRLINLL 464
                    F RL   L
Sbjct: 427 RSFEQRGDEFARLAEEL 443


>gi|156973107|ref|YP_001444014.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524701|gb|ABU69787.1| hypothetical protein VIBHAR_00786 [Vibrio harveyi ATCC BAA-1116]
          Length = 452

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 114/371 (30%), Gaps = 37/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQSLQDVIERGC-------WTEKQFSGVDGDWQAHKLVVDGSKFEVSLQGE--KVGIVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R      +   T+ D+  + 
Sbjct: 274 VLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGEEQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVW 405
                   +++    +  GE R +AVL         S +    + +     SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVL------EPRSATMKRGVNKNTLAASLHSADEVF 384

Query: 406 LSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           L            + D   +         MD     I      GD ++V  SN  GF   
Sbjct: 385 LFQPDSIDWSVQEIADQCKQ--PAFVDAEMDSFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 458 -YRLINLLLEE 467
             +L+  L ++
Sbjct: 441 HGKLLEQLKQK 451


>gi|295092964|emb|CBK82055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Coprococcus sp.
           ART55/1]
          Length = 453

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 122/383 (31%), Gaps = 40/383 (10%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V+      + +  IP++       +  +LA       K  I AITG+ GKTTT  ++   
Sbjct: 79  VDAPFTDVVRNAGIPIW-------SEIELAYHY---GKGKIAAITGTNGKTTTTALVGEI 128

Query: 130 LSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           + +    +        +IG+P T       D    + E+    L           P+++ 
Sbjct: 129 VKA----HNAKTIVVGNIGIPYTELCDTTDDDSDTVAEISSFQL----ETVIDFHPNVSA 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           I  + P HL+     E   + K  I +         LNYDD     +  K+        +
Sbjct: 181 ILNLTPDHLNRHYTFENYGNVKFSITKNQTMDDVTVLNYDDEHTRAMGEKAKDHCHVVYF 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S  +       +       E    ++ +           +G H  +N+L  +GI   +  
Sbjct: 241 SRLEKPAGGVYVEDGDIILEDGDKKINV---LAIKDLKLMGAHNVENVLAAVGISYYMGV 297

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            VD      + F     R                ++S   NP +    I  +   +    
Sbjct: 298 PVDVIRDVATSFKAVAHRI---EYVDTVDGVAYYNDSKGTNPDAAIKGIQAMVAPTFLIG 354

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
           G            G    S + +  E      +  + L G     + D   R     + +
Sbjct: 355 G------------GYDKGSEYDEWIE-AFDGKVKWLVLIGQTAQKIADCAKRHGFNSIIF 401

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            E +     +   + VDGD V++
Sbjct: 402 EENLQDAVAYCHENAVDGDAVLL 424


>gi|224826076|ref|ZP_03699179.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
 gi|224601713|gb|EEG07893.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lutiella
           nitroferrum 2002]
          Length = 455

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 135/416 (32%), Gaps = 56/416 (13%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLGALNKLA 99
            A+K   +D   F       GA ++VV+  +  +  +++         V DV      +A
Sbjct: 53  VALKTGAFDATTFA------GAEMLVVSPGVAVATPAIAAFRRAGGEVVGDVELFARAIA 106

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 S + +IAITGS GK+T   ++                   +IG+P+  A    +
Sbjct: 107 G-----SGSKVIAITGSNGKSTVTSLVGHLCRQAGLD----TVLAGNIGLPVLDALGERE 157

Query: 160 V-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D  + EL    L      T  +    A +  I+  HL  ++ + + A +K  +F
Sbjct: 158 ASGKRPDVWVLELSSFQL----ETTTSLNADAATVLNISEDHLDRYADLLDYAHSKTAVF 213

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
            G         +           ++          F   + AD+     +Q + + W+ V
Sbjct: 214 NGRGVQVLNRDDA--------LVRAMVRPGHAQRWFSLKETADY---ALRQDAGRYWLTV 262

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +           G H A N L  L +   +       ++ L  F     R        
Sbjct: 263 AGEAVFDCAEMSLQGLHNAANALAALALTEAIGLPRAALLEGLKTFTGLAHRV---EFVA 319

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  ID+S   N  + +AA++ ++          + + G   +  + S        +
Sbjct: 320 EVHGVRYIDDSKGTNVGATEAALNGMT-------RPVVLIAGGDGKGQDFSP------LK 366

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V L G     ++  L    + +    T++            GDVV++
Sbjct: 367 PACARIARAVLLIGRDAGKIRAVLEGLPLPIVDCATLEEATREAARLAEAGDVVLL 422


>gi|220931753|ref|YP_002508661.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
 gi|219993063|gb|ACL69666.1| UDP-N-acetylmuramate--alanine ligase [Halothermothrix orenii H 168]
          Length = 459

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 135/427 (31%), Gaps = 49/427 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVG 118
           KGA ++V++T +      L            A      +  + A+L      IAI+G+ G
Sbjct: 62  KGADMIVISTAIPEDNSELQAA-------RKAGLPVYGRAQMIAKLMEDKKTIAISGTHG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L   K     +     +    +         ++ + E   S        
Sbjct: 115 KTTTTSMVATILKENKMDPTVMVGGVLNN---IGGNVYLGKGEYFVTEADES-----DGS 166

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P   V+T I   H   +   E++ +   E    + K G   +  +D     +   
Sbjct: 167 LLYFDPSGVVVTNIEFDHHDYYDSKEKLLNTFKEFVNKIPKDGKAIVYAEDDNIRKILDN 226

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                 + + ++G +      +          +  V  +    E+     G H   N L 
Sbjct: 227 E----DRRVLTYGINAGKLKAININTLPFGSYYNLVYGERVLGEIRLQVPGVHNVLNSLA 282

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   +        ++L  F+    R +            LI + Y  +P  +KA + 
Sbjct: 283 AVAVGMYVGLSFTDIQESLGKFYGVHRRFE----KKGLIDSILIIDDYAHHPTEIKATLK 338

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
                     G    +          ++ F  + A+     ++ H+ ++           
Sbjct: 339 A-----ARNTGYERIIAIFQPHRYSRTRHFMEEFAKCFD--DVDHLIVTDIYSASEKPIP 391

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV-VKSSNSCGF-YRLINL 463
           G     L   +       V Y   ++ +  +++  +   D+V+ + + N      RL+N 
Sbjct: 392 GVTAEKLALKIDNCNGPDVDYIPELEEVVDYVEKIIKPRDLVITIGAGNVYKVGDRLVNR 451

Query: 464 LLEEFPA 470
           L E+   
Sbjct: 452 LREKREM 458


>gi|308271438|emb|CBX28046.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [uncultured
           Desulfobacterium sp.]
          Length = 468

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 102/353 (28%), Gaps = 13/353 (3%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA       K  I+AITG+ GKTTT  +    L          G+  N +   +     
Sbjct: 100 ELASRF---IKEPIVAITGTNGKTTTTILTGKMLEESGLKVFVGGNIGNPLIDYVDSGN- 155

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + E+    L  I + +    P ++V+  I   HL  +      A +K  IF  
Sbjct: 156 --KADIVVAEISSFQLDTIEYFS----PKVSVLLNITEDHLDRYPDFNAYAKSKMRIFIN 209

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +       N  D    L+        +        +   +F      +          +
Sbjct: 210 QKDGDYAVFNASDKHISLMAKDIKCRILPFFNHNTLNDYNEFAKIADDRIVFNINNIAAI 269

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +                 + L     +       +  L+      G         + 
Sbjct: 270 NSDATNPDKTFEKEFSLPFSGIHLLGKHNMENVAAATLATLAAGGNIAGIKSALEKFKSL 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                   + N       +  + +  +    E     V+  M   G  ++  +  L    
Sbjct: 330 PHRIEHVATINGVEYYNDSKATTVDSVIKALEVFNKPVILIM---GGRNKGSNFALLADA 386

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  + L G     +K +L   +    S++++   +         +VV++
Sbjct: 387 AKKHVKRLILIGESKEEIKSSLGGIVETTLSDSLENAVVTASKFAETDEVVLL 439


>gi|197116890|ref|YP_002137317.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226706323|sp|B5EBQ2|MURC_GEOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|197086250|gb|ACH37521.1| UDP-N-acetylmuramate--alanine ligase [Geobacter bemidjiensis Bem]
          Length = 461

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 80/428 (18%), Positives = 137/428 (32%), Gaps = 60/428 (14%)

Query: 40  QEAFFAIKGPHYDGHDFILHAVQKGAGL---VVVN--TDMVASIGSLSIPVFGVDDVLGA 94
            E FF        GH     A +  A     V+ +   D    +    + +  V      
Sbjct: 51  GEIFF--------GH-----AAENVANADVVVISSAVHDDNPEVVEAHLRLIPVIPRAEM 97

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +L            IA+ G+ GKTTT  M+   LS        +     +    L   
Sbjct: 98  LAELMRMKYG------IAVAGTHGKTTTTSMVATILSKGGIDPTIVIGGRLNS---LGTN 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                  F + E   S          L+ P IAV+T I   HL  +SGIEEI     E  
Sbjct: 149 ARLGQGQFLVAEADES-----DGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFI 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWME 273
             +   G   L  D+     +  +          S+G S  ADF+    K      S++ 
Sbjct: 204 NKIPFYGLAVLCLDNGNIADVLPRVKK----RFTSYGMSAQADFRATDVKLSGFSTSFVA 259

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                +  E+     G H   N L  + +   L    +T  +  + F     R       
Sbjct: 260 HHKGVRLGEITFSMPGAHNVLNALAAIAVAMELDIPFETIQEGFAGFGGVGRRFH----L 315

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +    ++ + Y  +P  +KA +      +  G      V+         ++    +  
Sbjct: 316 KGEANGIMVVDDYGHHPTEIKATLGA----AKAGFAENRLVVVFQPHRYSRTKELFEEFV 371

Query: 394 EVLSLYNISHVWLS-----------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSS 440
           +  + ++   + L+           G    AL + + R     V +    D L   ++  
Sbjct: 372 K--AFHDADVLILTDIYPAGEAPIEGVTAEALANRVRRHGQKDVTWISDRDKLCEHLERV 429

Query: 441 LVDGDVVV 448
           L  GD+++
Sbjct: 430 LAPGDILL 437


>gi|134298544|ref|YP_001112040.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
 gi|189029171|sp|A4J2B2|MURC_DESRM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134051244|gb|ABO49215.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 125/427 (29%), Gaps = 61/427 (14%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VV +T +      +       IP+       G    LA   + +     IA+ G+ GKT
Sbjct: 71  AVVYSTAISPENPEILETQRLGIPLIR----RG--QMLARLMKEK---KGIAVAGAHGKT 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  M  + L         I   +         + +  +   G  E  ++   E      
Sbjct: 122 TTTSMTALILEENSFDPTIIIGGDL--------SNIGGNAKLGQGEYMVAEADESDGSFL 173

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           L+ P+IAV+T I   HL  +   E IA A  +    L   G   +  DD     +  +  
Sbjct: 174 LLDPNIAVVTNIEDDHLDYYGTRENIAKAFRQFLAKLSAEGLAVICLDDP----VLKEIT 229

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                 + ++G   +      K  +             +    +           +    
Sbjct: 230 TGLTCQVVTYGSLGSGADYQIKVLETRNGVNQGEVYFQEERLGMLELHVPGYHNLLNAMA 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +      ++D    A ++      + +        G   + D +++          + L
Sbjct: 290 AVAIGRHLNLDFEKIARALRKFTGAKRRFQVIGKVNGITVVDDYAHHPTE-----VKATL 344

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GF 409
                   GR + +          ++    +  +     N   + L+           G 
Sbjct: 345 QAARTSHPGRIVTIFQPHRY--SRTKQLFKEFGQSF--TNGDLIILTDIYAASELPLEGV 400

Query: 410 HVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-------NSCGFYRL 460
           H   + DA+P      V Y  T+     ++      GD+V+   +              L
Sbjct: 401 HTKLILDAIPLQEGQQVLYLPTLKDAADYLADYANPGDLVLTMGAGDVWTLGR-----EL 455

Query: 461 INLLLEE 467
           I  L E+
Sbjct: 456 IKRLEEK 462


>gi|295098592|emb|CBK87682.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 438

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 133/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +  K          +IG+P  +  +    +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGKNV----GVGGNIGLPALML-LDKGCE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LFVLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCISFGI------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMMLSGQHNYTNALAALALADAVGLPRSSSLKALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLYLLLGGDGKSADFS-----SLKQYLNGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L    P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGSELAALRPEV--AEQTETMEQAMRLIAPRVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDVFTRLAKEL 437


>gi|148927746|ref|ZP_01811182.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
 gi|147886909|gb|EDK72443.1| cytoplasmic peptidoglycan synthetases domain protein [candidate
           division TM7 genomosp. GTL1]
          Length = 302

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+D+SYN+   S   A++ L  +      +RIA+LG + EMGELSQS H  +       
Sbjct: 151 ILLDDSYNS---SAVTAVAALQTLYKIQAPQRIAILGSINEMGELSQSEHEKVGNACDPN 207

Query: 400 NISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCG 456
            ++ V   G          A  R   V   +       F++  +     ++ K S N   
Sbjct: 208 ALAWVVTVGKMAEKYLAPAAKERGCQVRSFKEAYDAGAFVRKVMEPRAAILAKGSQNGVF 267

Query: 457 FYRLINLLL 465
               + LLL
Sbjct: 268 TEEALKLLL 276


>gi|227356426|ref|ZP_03840814.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
 gi|227163536|gb|EEI48457.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           ATCC 29906]
          Length = 436

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 125/376 (33%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS GK+T   ++     +             +IGVP     +    D
Sbjct: 99  FCREAKAPIVAITGSNGKSTVTTLVGEMAKA----DGIPVGVGGNIGVPALTL-LTQPYD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ +    A +  I+  H++ +  G+E+   AK  I++  +  
Sbjct: 154 LYVLELSSFQL----ETTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       + +     A       SFG  +         +  +      +      
Sbjct: 210 VYNA--------DDVLTLPLAGKDARCVSFGIGQGDYQLDNTNRYLNVNGENILATSQMF 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   H+      A  +   +GI    +  V      L+           ++   +     
Sbjct: 262 LSGQHNYTNALAALALADAVGISRKASLAVLNTYHGLAHR---------FQLVYSHNGVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       EG    +LG   +  + S      L   LS  N
Sbjct: 313 WINDSKATNVGSTEAALRGL-----EVEGTLHLLLGGDGKSADFSA-----LLPYLSGDN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G    AL +  P+   +    TM+     +  ++  GD+V++    +S     
Sbjct: 363 I-RLYCFGQDGQALANLRPQVSQLT--ATMEEAMRLLAPTVQTGDMVLLSPACASLDQFK 419

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 420 SFEQRGDEFARLAQEL 435


>gi|226328330|ref|ZP_03803848.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
 gi|225203063|gb|EEG85417.1| hypothetical protein PROPEN_02224 [Proteus penneri ATCC 35198]
          Length = 436

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 125/376 (33%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS GK+T   ++    S+             +IGVP     +    D
Sbjct: 99  FCREAKAPIVAITGSNGKSTVTTLVGEMASADGIRV----GVGGNIGVPALTL-LTEPHD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ ++   A +  I+  H++ +  G+E+   AK  I++     
Sbjct: 154 LYVLELSSFQL----ETTYSLKAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDN---- 205

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       +       A       SFG  +         +    +    +      
Sbjct: 206 ----AKACVYNEDDALTLPLAGKDNRCVSFGVGQGDYQLDNINRILKVKGEKVLSTAEMY 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   H+      A  +   +GI    T +V      L+           ++   +     
Sbjct: 262 LSGQHNYTNALAALALADAVGISRKATIEVLKTYHGLAHR---------FQLVYSHQNVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       EG    +LG     G+   +    L   +S  N
Sbjct: 313 WINDSKATNVGSTEAALRGL-----EVEGTLHLLLG-----GDGKSADFTSLLPYISGDN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G    AL +  P    +    TM+     +  ++  GD+V++    +S     
Sbjct: 363 I-RLYCFGQDGQALANLRPDVSLLTV--TMEEAMRALAPTVKSGDMVLLSPACASLDQFK 419

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 420 CFEQRGDEFARLAREL 435


>gi|78779845|ref|YP_397957.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9312]
 gi|118595673|sp|Q319C4|MURD_PROM9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78713344|gb|ABB50521.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9312]
          Length = 468

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 124/373 (33%), Gaps = 47/373 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I ITG+ GKTT   +L+  L   K      G+    +      ++    +D+ + EL   
Sbjct: 123 IGITGTNGKTTVTHLLSHILCENKLYAPFAGNIGTPL-CKYAYSKKYEKIDWVVAELSSY 181

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            +     ++  V+P+I + TT    HL     +E   + K  + E  +     +      
Sbjct: 182 QI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLEKSDFRIYNY------ 231

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + L+    +L      +    K+   Q   W    +Q+++  + +           G 
Sbjct: 232 DDKNLRNHYSSLSKGVWITTSLDKSNFIQCDYWI--DDQAFIIERGKRLFKLEHFSLKGI 289

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  QN+L+ +     +         +LS +        R           +I++S   N 
Sbjct: 290 HNLQNLLLVIAAARKVGLSGKKIKDSLSNYK---QLPHRMETIYKNNDLEIINDSKATNF 346

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S  A I+ +       EG+ I + G   +  + S+         +    +  ++L G  
Sbjct: 347 DSSIAGINSI-------EGQIIIISGGRLKGNKYSEWV------QVLKQKVKCIFLFGES 393

Query: 411 VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSS------------N 453
              LK AL        +     +  L  F+   L +  V  ++   S             
Sbjct: 394 SKVLKMALINEGFKKDIFEFSELKELLNFVFHYLQNNKVGTLLFSPSCSSFDQFKNYEER 453

Query: 454 SCGFYRLI-NLLL 465
              F +LI   L 
Sbjct: 454 GDHFKKLISEKLK 466


>gi|261338918|ref|ZP_05966776.1| hypothetical protein ENTCAN_05116 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318743|gb|EFC57681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 438

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +    +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGMNV----GVGGNIGLPALML-LDKGCE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTTSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG +       R+  +   +   E  L  K 
Sbjct: 210 VVNADDALTMPVR--------GADDRCISFGITMGDYHLNRQLGETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++       +    + +   +         ++++AL+ +     R    + AL      
Sbjct: 262 MKLSGQHNYTNALAALALADAVGL----PRSSSLQALTTYSGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLKQYLAGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGGELAQLRPE--IAEQTETMEQAMRLIAPRVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDIFTRLAKEL 437


>gi|188996362|ref|YP_001930613.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931429|gb|ACD66059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 465

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 112/315 (35%), Gaps = 36/315 (11%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    +    + T+ ++P +++I  I+  HL      +    +K ++ +  E +  
Sbjct: 170 VVLELSSFQI----YSTNTLKPKVSIILNISTDHLDWHKKEKHYILSKLKLLKNTEFS-- 223

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNY+D   + +K K+                   + RK    +  + +    + + ++
Sbjct: 224 -VLNYNDKCLKNIKGKNVYYFSLKELPEDVKGIYLKEYRKEDGLNVYNLVLKDDKTEEIQ 282

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    IG+H  QN++ T+    +L  +++  I+ +  F P   R                
Sbjct: 283 VKTQLIGFHNLQNIMATILTAYLLNVNINKVIEKIKEFKPLNHRI---EFVKEVEGVKFY 339

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S +    +++ AI    +       + + +LG + + G+ S+     L  +L    + 
Sbjct: 340 NDSKSTTVQAVEKAIESFDE-------KIVLILGGINKGGDFSK-----LGSLL-KTKVL 386

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG-DVVVV---KSS------ 452
             ++ G     +   +    +    E+++               VV+     +S      
Sbjct: 387 SAFIIGRDKEQIFRMIKDYTNSIKKESLEEAVKDAFEVAKSNKAVVLFSPGCASFDMFKN 446

Query: 453 ---NSCGFYRLINLL 464
                  F  ++  L
Sbjct: 447 YADRGNKFKEIVESL 461


>gi|59710872|ref|YP_203648.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
 gi|59478973|gb|AAW84760.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio fischeri ES114]
          Length = 459

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 117/363 (32%), Gaps = 29/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L      Y         +G     AR+   + F +     
Sbjct: 105 VMAVAGTHGKTTTSSMLAWVLEE--CGYKPGFLVGGVLGNFGESARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +       RP   V+  +   H   F  +  I      +   +  TG IF    
Sbjct: 163 DSAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSTGRIFAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   E +  +         +S  +    D Q +  K   + S  +V  +G+++  V    
Sbjct: 223 DKPLEQVLEQGC-------WSELEFTGEDGQWKAIKLQKDGSQFDVYFEGENVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L +V+       T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVSNALMVVASARHVGVTPDLACEALGKFINTKRRLELKGEVNGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G    +         SL+    V+
Sbjct: 334 ---PTAIDLTLNGLRNKVGDKKIIAVLEPRSSTMKLGVHKDTL------AASLHAADSVY 384

Query: 406 LSGFH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L     +    D + +      H    +D     I +    GD ++V  SN  GF  +  
Sbjct: 385 LYQPDNIAWSVDDVAQQCTQPAHTHNNIDAFVDMIVNEAQPGDQILV-MSNG-GFEGIHG 442

Query: 463 LLL 465
            LL
Sbjct: 443 KLL 445


>gi|291535568|emb|CBL08680.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           M50/1]
          Length = 459

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 133/382 (34%), Gaps = 43/382 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++            IA+ G+ GKTTT  M++  L + K                  
Sbjct: 101 ELLGQIMDNYNNS-----IAVAGTHGKTTTTSMISQILLAAKADPTISVGGILK------ 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  ++ +S   E         P  +VI  +   HL  F  I++I ++  +
Sbjct: 150 --AIEGNIKVGKSDIFLSEACEYTNSFLHFYPRYSVILNVEAEHLDFFKDIQDIRNSFRK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
                +K G I +N +   +  L     +     + +FG + + D+             S
Sbjct: 208 FAGNTKKDGAIIINGEIENYTEL----TSGLDPQVITFGLNDSCDYYPSDITFDKTACAS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  +      M+V  H  G H   N L  + +   L    D  +  LS F   + R +  
Sbjct: 264 FTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYK 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            C         I + Y  +P  ++A ++               VL         +++F  
Sbjct: 324 GCVDG----VTIIDDYAHHPTEIRATLTAAKNYPHKR-----LVLAFQPHTYSRTKAFLD 374

Query: 391 DLAEVLSLYNISHVW---------LSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSS 440
           D A+VLS+ ++  +            G     +   L  +    +Y  + + +  F+  +
Sbjct: 375 DFADVLSMADVVVLADIYAAREKNTYGISSRDILAKLKEKGTECYYFPSFEEIEKFLLKN 434

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
            ++GD +++      G   ++N
Sbjct: 435 CINGD-LLIT----MGAGDIVN 451


>gi|330448820|ref|ZP_08312467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328493011|dbj|GAA06964.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 450

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/363 (15%), Positives = 110/363 (30%), Gaps = 29/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VMAVSGTHGKTTTASMLA--WILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPGNGRILAPKG 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +              +S  +    D   R  K   + S  +V L G ++       
Sbjct: 223 VKNIDETLE-------MGCWSELEYIGGDGHWRAEKHREDGSVFDVYLDGDNVG--TVRW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 PLVGDHNVNNALMAIAAARHVGVTPDLACEALAKFINTKRRLELKGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ R +AVL    +  ++G         L      +    V+
Sbjct: 334 ---PTAIELTLGGLRAKVGDSRILAVLEPRSNTMKLGVHKDDLAPSL------HAADEVF 384

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                ++    + + +      + S+ +D L   I      GD ++V  SN  GF  + +
Sbjct: 385 FFQPPNIPWSVEEIAQQCSQPAYSSDDLDELVKRIVEQAKPGDTILV-MSNG-GFGGIHD 442

Query: 463 LLL 465
            LL
Sbjct: 443 KLL 445


>gi|239621197|ref|ZP_04664228.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|239515658|gb|EEQ55525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 517

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 121/428 (28%), Gaps = 44/428 (10%)

Query: 10  LLQAIQGHSIGIVP------QGFVNGISIDSRSIAPQEAFFAIKG----PHYDGHDFILH 59
           L + IQG      P           GI+ D+R + P       KG     + +G   I  
Sbjct: 18  LREIIQGDVWTDDPARIASADEPFAGITYDTRKVTPDAL-LCCKGQFKAEYLNG---IDE 73

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA--RLRSKATIIAITGSV 117
           A   G    V  T+  A+  +   P   V+D   A++ L+ A     +++ T+I +TG+ 
Sbjct: 74  A---GLAAYVAETEYSAATAT---PGLIVNDARKAMSLLSAAFYGYPQNELTVIGVTGTK 127

Query: 118 GKTTTKEMLTIAL----------------SSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           GKTTT       +                     TY               + R   D  
Sbjct: 128 GKTTTSYFTQALINAVSGGKAALFSSVDNCLDGHTYVESDLTTPESMDAFRMMREAADNG 187

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEK 219
                + +S         + +   +A    I+P H+S       E+    K +I    + 
Sbjct: 188 MKYLVMEVSSQAYKVDRVYGLTFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIVNAKS 247

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +            +             +      +  W      +   +    +
Sbjct: 248 LVLGADSLHADLLREDAEAAGIGVTTFALHDADNAGTSADVVAWPADPAHASFHIADGDQ 307

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           ++   H  I              ++           AL         G+  +    Q   
Sbjct: 308 ALGDYHLSIDGDFNYLNAAAAIAIAHAVGVSLDDADALHAIESVRIAGRMEQFRDPQSNT 367

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I + Y  N AS+ A +  + +       R   V G     G  +     ++ E     
Sbjct: 368 LAIVD-YAHNYASVTALLDFVYERWGEENPRITLVTGSA---GNKAYDRRKEIVEAAENR 423

Query: 400 NISHVWLS 407
             + ++ +
Sbjct: 424 IANFIFTA 431


>gi|325128263|gb|EGC51148.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Neisseria meningitidis
           N1568]
          Length = 458

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/416 (14%), Positives = 116/416 (27%), Gaps = 55/416 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV   +   +  +S P +  ++VL                 ++ + G+ GKTTT  ML  
Sbjct: 79  VVEAILNRGLPYISGPQWLAENVL-------------HHHWVLGVAGTHGKTTTASMLAW 125

Query: 129 ALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL-- 178
            L                           P           F + E              
Sbjct: 126 VLEYAGLAPGFLIGGVPENFSVSARLPQTPRQDPN--SQSPFFVIEADEYDTAFFDKRSK 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RP   V+  +   H   F+ +  I +    +   +   G I  N      +    K
Sbjct: 184 FVHYRPRTVVLNNLEFDHADIFADLGAIQTQFHHLVRTVPSEGLIICNGQQQSLQDTLDK 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                ++   +       +   +  +  ++ S+  +     +  V    +G H   N L 
Sbjct: 244 GCWTPVEKFGT-------EHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALA 296

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKA 355
            +     +   + TA +AL  F   + R +    A        F     +       ++ 
Sbjct: 297 VIAAARHVGVGIQTACEALGAFKNVKRRMEIKGTANGITVYDDFAHHPTAIETTIQGLRQ 356

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLA 413
            +     ++          LG M              A  +SL     V+    G     
Sbjct: 357 RVGGARILAVLEPRSNTMKLGTMKS------------ALPVSLKEADQVFCYAGGVDWDV 404

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLL 465
            +   P    ++  +  D     I  +   GD ++V  SN  GF     +L+  L 
Sbjct: 405 AEALAPLGGRLNVGKDFDAFVAEIVKNAEVGDHILV-MSNG-GFGGIHGKLLEALR 458


>gi|146328783|ref|YP_001209872.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
 gi|146232253|gb|ABQ13231.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dichelobacter
           nodosus VCS1703A]
          Length = 436

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/362 (18%), Positives = 117/362 (32%), Gaps = 39/362 (10%)

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
            ++   L           +  + A+TGS GK+T   ML  A  ++       G+      
Sbjct: 82  KNIHATLMNDVELFARLIEKPVAAVTGSNGKSTVVTMLADAARAVGLKTQLCGNIGKS-- 139

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V         + D  + EL    L         +   + V+  + P HL  +    +  +
Sbjct: 140 VLTAWLEDEEEPDLYVLELSSYQL----ERCPSLMIDVGVVLNVTPDHLDRYDSFLDYVA 195

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           AK+ + +  + T     +        L  ++   G + +                    E
Sbjct: 196 AKSHLAQQTQLTILNGDDEYCRQMAPLSRQTVFFGAQCVNRV-----------------E 238

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              + V  Q           G H A N L+ L + S L  D+   ++AL  F     R  
Sbjct: 239 NGAIIVNGQTVLTADELKIHGQHNAYNALVALLMASGLGIDISYTLEALKNFRGLPHRMC 298

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                        +++S   N AS  AA+   +            ++G +       Q F
Sbjct: 299 E---VACFNDVLWLNDSKATNIASTAAALVGCT-------RPTWLIVGGVG----KGQDF 344

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           H  LA VL    I HV + G     +  A  + +I  H   T+     +   +   GD V
Sbjct: 345 H-QLAAVLLQAPIKHVLMIGVDNHTMIAAFKKANIAFHDCGTIKAAVSYAYQNADAGDQV 403

Query: 448 VV 449
           ++
Sbjct: 404 LL 405


>gi|295107917|emb|CBL21870.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus obeum A2-162]
          Length = 459

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 129/407 (31%), Gaps = 41/407 (10%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A      +P+          L ++          T IA+ G+ GKTTT 
Sbjct: 76  TAAIHPDNPEFACAKEKGLPML----TRAQLLGQIMRNY-----DTSIAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML+  L   +              V   L  +  ++  G  E  ++   E         
Sbjct: 127 SMLSHILLKGECDPTIS--------VGGILPAIGGNIRVGQSETFLTEACEYTNSFLSFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +I  +   HL  F  I++I  +  +  E L   G + +N D   +E++        
Sbjct: 179 PTLGIILNMDADHLDFFKDIDDIRHSFRKFAELLPADGALIINADTPKYEMVAENL---- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++G   +A++             ++  +              G H   N L ++ 
Sbjct: 235 PCKVITYGLEHDAEYTASDITYDEFGHPTFHVLHNGEDIGICSLKVPGIHNVSNALASIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAA 356
              +L  D +     L  F   + R +                         + A     
Sbjct: 295 AGRLLDLDNEVIFAGLKDFGGTDRRFQYKGKVGEVTIIDDYAHHPTEIEATLHAAHNYPH 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             +     PH   R  A+L +  +   L+ + H+ LA++ +     ++   G     L+ 
Sbjct: 355 KKIWCVFQPHTYTRTKALLPEFAK--ALTLADHVVLADIYAARETDNL---GISSADLQK 409

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +        Y  T D +  F+  +   GD +++      G   ++N
Sbjct: 410 QIRELGTPCEYFPTFDEIENFLLENCTQGD-LLIT----MGAGDVVN 451


>gi|331083028|ref|ZP_08332147.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330399765|gb|EGG79426.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 457

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 102/336 (30%), Gaps = 40/336 (11%)

Query: 146 HIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A +   +  + + E+    L  I        P ++ I  I   HL+    +E
Sbjct: 146 NIGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA----PKVSAILNITEDHLNRHHTME 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  I     K     LNY+D        +  A    T++   + K          
Sbjct: 202 EYIRVKELITANQTKEDYCILNYEDEVLRAFGERCPAK---TVFFSSERKLGKGAFLDGD 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               ++  E              +G H  +N++    +       V+   KA++ F    
Sbjct: 259 AICLKTDTETLE--IVKTGELKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVA 316

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R                ++S   NP +    I  +++ +    G            G  
Sbjct: 317 HRI---EFVDEINGIAYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYD 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLV 442
            +S + +  +      + ++ L G     +++   +   V    ++ ++           
Sbjct: 362 KESSYEEWIQSFD-GKVKYLVLIGQTREKIQEVAHKCGFVNTILADNLEEAVSICTQKAE 420

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLE 466
            GD V++    +S             F   +  L +
Sbjct: 421 KGDAVLLSPACASWGQFDNYEQRGDKFKEYVYALKK 456


>gi|33240888|ref|NP_875830.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|60390538|sp|Q7VAM1|MURD_PROMA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33238417|gb|AAQ00483.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 470

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/423 (14%), Positives = 112/423 (26%), Gaps = 62/423 (14%)

Query: 66  GLVVVNTDMVASIGSLS---IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            LV+V+  +     +L+        V+      +++ +A R       + ITG+ GKTT 
Sbjct: 78  ALVIVSPGIPWDHPTLNQLRKRGIIVE------SEINLAWRALKNTPWVGITGTNGKTTV 131

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV--DFGIFELGMSHLGEIRFLTH 180
             ML   L++        G+            R        + I EL    +        
Sbjct: 132 THMLNHVLNNSFIESTIGGNVGKAATEIALALRKSTKHKPKWLIMELSSYQI----ETAP 187

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            + P I + TT+ P HL     +E   + K  +            +   S   L   K  
Sbjct: 188 EISPEIGIWTTLTPDHLERHGSLENYFAIKRTLIANSSIRIYNADDKYLSKNRLNLPKGL 247

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            +  +   S     +                                 G H  QN+L+  
Sbjct: 248 WVSAQKYNSNINQLDFWISSNGMVIEQG--------NELFHSSALQLPGDHNLQNLLLVS 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +         AL  F     R              + ++S   N  S +  +   
Sbjct: 300 AAARKIGLSGMAIENALISFAGITHR---LEKVDKIIDIDIFNDSKATNFDSAEIGLKA- 355

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                      I + G + + G      ++D    +    +  V L G   + L+  +  
Sbjct: 356 ------TSAPVILIAGGLSKQG-----IYLDWINQIKE-KVCAVILIGESRVKLQHLIKS 403

Query: 421 S---IHVHYSETMDGLFLFIQSS-----LVDGDVVVV---KSS---------NSCGFYRL 460
                 +   E +D                    ++     +S             F +L
Sbjct: 404 HGFRGEIVCYEKLDKAVDKAIKLGVKFRAKS---ILFSPGCASFDQYSNFEERGDHFKKL 460

Query: 461 INL 463
           I  
Sbjct: 461 IKE 463


>gi|206561798|ref|YP_002232563.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           J2315]
 gi|229486475|sp|B4E6J1|MURC_BURCJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|198037840|emb|CAR53784.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           J2315]
          Length = 465

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 154/432 (35%), Gaps = 40/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNMPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHV------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G          AL  AL  +  V   +  T+D +   +     +GDVV+   + S G 
Sbjct: 393 AAGEAAIPTASGDALSRALRAAGKVDPVFVATVDDVPDALAKVARNGDVVITMGAGSIGG 452

Query: 458 --YRLINLLLEE 467
              +L+  + ++
Sbjct: 453 VPAKLVQHIQQK 464


>gi|257784288|ref|YP_003179505.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
 gi|257472795|gb|ACV50914.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Atopobium parvulum
           DSM 20469]
          Length = 467

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 93/325 (28%), Gaps = 36/325 (11%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              + + EL    L   + L     PH+A++  I P HL     +E  A+AK +IF  L+
Sbjct: 159 SNSWFVAELSSFQLATTQKLH----PHVAMLLNITPDHLEWHGSLEAYAAAKEKIFANLD 214

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 ++  D F   + ++  A GI    S       D   +        + +      
Sbjct: 215 VNDLAIVSDLDEFCLAVSSRLEARGI----SVCHLAQTDPGTQNAAFVRNGALVVRLSGK 270

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +   V    +      N L  L   +         +              R         
Sbjct: 271 EMELVATDALHIRGMHNALNALAAAACGLFLGIDIVSIRHALLDFMPLEHRIEPVKTING 330

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              +++S   N  S      V   ++   +   I +LG   + G     F   ++   + 
Sbjct: 331 VLYVNDSKATNTDS------VEKSLTSFPDKDIILLLGG-HDKGTELDKFAQKVSATCA- 382

Query: 399 YNISHVWLSGFHVLALKDALP--RSIHVHYSET--MDGLFLFIQSSLVDGDVVVVK---- 450
               +    G       +AL           E   +   F         G VV++     
Sbjct: 383 ----YAICFGEAGPRFAEALRHVSGGRAEVVEEPHLREAFAHAVELARPGFVVLLSPACS 438

Query: 451 --------SSNSCGFYRLINLLLEE 467
                   +     F +L+  L +E
Sbjct: 439 SFDEFSGMAQRGHVFKQLVEDLAQE 463


>gi|294792042|ref|ZP_06757190.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
 gi|294457272|gb|EFG25634.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           6_1_27]
          Length = 456

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 96/319 (30%), Gaps = 39/319 (12%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L  I++     RP  A++  I P HL+    +E   +AK  IFE    T 
Sbjct: 159 FLVAELSSYQLETIKYF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD     +             S     +    +      ++      +      
Sbjct: 215 YLVLNIDDPVVADM--------EHRSSSHILKISQKKAVENGAYYADGQCYIAKDGVAKF 266

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            + +  I    + N+   L ++++  A          +     G   R          T 
Sbjct: 267 VIGNEDIHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGITF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S+  A+    Q      G            G    +   D  E++     
Sbjct: 327 YNDSKATNVDSVVKALESFDQQVILLAG------------GHDKMTPLEDFMELVKE-KT 373

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
             V   G      + A   +    ++ + +M             GD+V++    SS    
Sbjct: 374 KAVIFMGEAADRFETAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACSSFDWY 433

Query: 453 -----NSCGFYRLINLLLE 466
                    F R +++L E
Sbjct: 434 SCFEERGDDFKRCVHMLQE 452


>gi|218780054|ref|YP_002431372.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
 gi|218761438|gb|ACL03904.1| UDP-N-acetylmuramate [Desulfatibacillum alkenivorans AK-01]
          Length = 473

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 123/380 (32%), Gaps = 40/380 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
           S+ T I +TG+ GKTTT  ++   ++++        ++     +    +   V    + +
Sbjct: 113 SQKTPIMVTGTHGKTTTSALIAWLIAAVGLD----PTFMIGGILTNFKSNHQVGTGAYMV 168

Query: 165 FELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            E                   P   V+T++   H   F  ++ + SA   + + L +   
Sbjct: 169 IEGDEYDTAFFDKGPKFLHYTPSRTVLTSVEFDHADIFKDLDHVKSAFTSLVKNLPRESL 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +     D   + +  +  A    T Y FG+         + +          +      E
Sbjct: 229 LVFQEADDNIKDILQQ--ADCWLTPYGFGEKAPWRIGEMRTEPPYT-FIEVFRRGEFFAE 285

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H A N L  + +V  L   V+     L  F     R    +          +
Sbjct: 286 FKVPLMGKHNALNCLAAIAVVDDLRIPVEGIQAGLETFKGVARR----QQVRGVKNNITV 341

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + +  +P +++  I  +     + +GR  AV          + S    + + +      
Sbjct: 342 MDDFAHHPTAVRETIKAVKPF--YDKGRVAAVF------EPRTNSSRRKVFQDVYPTVFD 393

Query: 403 H--VWLSGFHV--------------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
              +                       ++D   R    H+   + G+  F+  +L  GD+
Sbjct: 394 DADIICIPQPTLLEKIPPEERFSSEKLVEDLKARGKDAHFFADVQGIIDFLAKTLEPGDL 453

Query: 447 VVVKSSNSCGFYRLINLLLE 466
            ++  SN  GF  +   LL+
Sbjct: 454 ALI-MSNG-GFENIHERLLD 471


>gi|254226619|ref|ZP_04920199.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
 gi|125620838|gb|EAZ49192.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V51]
          Length = 506

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 127/373 (34%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++E+  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLEITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|260437302|ref|ZP_05791118.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
 gi|292810214|gb|EFF69419.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Butyrivibrio
           crossotus DSM 2876]
          Length = 453

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/391 (16%), Positives = 133/391 (34%), Gaps = 41/391 (10%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +++D+V      ++PV+G         +LA       K T+ AITG+ GKTTT  ++   
Sbjct: 81  IDSDIVKLFEKENVPVWG-------EIELAYNF---EKGTVFAITGTNGKTTTTTLVGEI 130

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           +         +G+  N     +          + + E+    L  IR       P  + I
Sbjct: 131 MKKYNNQTFVVGNIGNSYTSEVLKT---TKDSYTVAEISSFQLETIREFA----PRGSAI 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I P HL+    +E  A+ K  I +   K         +   ++L+     +     +S
Sbjct: 184 LNITPDHLNRHYTMENYAAVKESITKNQWKVREDDYCVLNYDDKVLREFGKTIKNPVYFS 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             +  +    L            + ++         H  G H  +N++  + +       
Sbjct: 244 RKEKPSKGAYLDGRIIRYFDGKNDYEV---MSVDDMHLFGNHNYENVMAAIAMTIEAGVP 300

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++  I  +  F   E R        ++      ++S   NP S   A+  +S+ +    G
Sbjct: 301 LNIIINVIKDFMGVEHRI---EYVRDKNGVRYYNDSKGTNPDSSIKALEAMSRPTILIAG 357

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYS 427
                       G    S   +  E      +  + L G     +++   R    ++  +
Sbjct: 358 ------------GYDKHSEFDEFIE-AFDNKVKLMVLLGQTADKIEETAVRHGFTNIIKT 404

Query: 428 ETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
           ++++        + V GDVV++    +S   
Sbjct: 405 DSLEKAVKICAENAVSGDVVLLSPACASWGM 435


>gi|238760097|ref|ZP_04621247.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
 gi|238701716|gb|EEP94283.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia aldovae ATCC
           35236]
          Length = 495

 Score = 54.9 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 140/411 (34%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 134 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I P H+  +    E +          L   G   +  DD     L  
Sbjct: 189 ---LQPMVAIVTNIEPDHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 246 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + S    + D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 302 AAAVAVASEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 362 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 417

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L   D+++V+ 
Sbjct: 418 EPPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQLLNGDDLILVQG 468


>gi|317495036|ref|ZP_07953408.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
 gi|316914808|gb|EFV36282.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella moribillum
           M424]
          Length = 446

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 105/345 (30%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L    K          +IG P             + 
Sbjct: 106 FSIDMVAITGTNGKTTTTQMTYDILKKANKDVF----LAGNIGYPSIEVAYNHPKSLIVT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   ++     +P IAVIT +   HL     +E   +AK +I+    K      
Sbjct: 162 EVSSFQLEGTKYF----KPSIAVITNLGEGHLDYHGNLENYQNAKKKIYVNQTK------ 211

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 F ++  K                    +        +++ +  +          
Sbjct: 212 ----DDFLIINIKEKEKYNFDKIKSTIIFYDTKENISTDVYIKENIVMFRETELFDSTKL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +    I  +  A  D   + L  F   + R    +           ++S
Sbjct: 268 KLPGMHNVENAINAAIISYLKGASTDAIQQVLYNFSGVKHRL---QYVGEYKGVKYYNDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +   A+S             I + G     G+       +L   L    I  + 
Sbjct: 325 KATNPVATTTALSGFD-------KNIILICG-----GKDRGIDFKELIPYL--SKIKVMV 370

Query: 406 LSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G     L   A+  ++    +  +        S   +GD V++
Sbjct: 371 VVGESKELLYSLAIQHNVKCIKAIKVADATKLASSLAKNGDTVLL 415


>gi|15892254|ref|NP_359968.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia conorii str.
           Malish 7]
 gi|20532173|sp|Q92IT9|MURC_RICCN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15619392|gb|AAL02869.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia conorii str.
           Malish 7]
          Length = 485

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 129/419 (30%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L        I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +     N      I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNNAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMLCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +        +L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|251788248|ref|YP_003002969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya zeae
           Ech1591]
 gi|247536869|gb|ACT05490.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya zeae
           Ech1591]
          Length = 437

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWAV----GVGGNIGVPALEL-LKQESQ 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 153 LYVLELSSFQL----ETTYSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYENAKVC 208

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG     D       +   ++W+ V+ +   
Sbjct: 209 IVNADDALTMPVR--------GADDRCLSFG----VDVGDYHLNRQQGETWLRVKGERVL 256

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + AL +    
Sbjct: 257 NTREIKLVGQHNYTNALAALALADAVGIPRSSALIALTTFTGLPHRF---QLALERNGVR 313

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +++S   N  S +AA+S L     H +G    +LG   +  + S      L   L    
Sbjct: 314 WVNDSKATNVGSTEAALSGL-----HVDGMLHLLLGGDGKSADFSP-----LLRYLQGDR 363

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P       ++TM+     I   +  GD+V++    +S     
Sbjct: 364 I-RLYCFGRDGGQLAALRPD--IAERTDTMEQAMTLIAGRIQPGDMVLLSPACASLDQFR 420

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 421 SFEQRGDEFARLAEEL 436


>gi|170748777|ref|YP_001755037.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655299|gb|ACB24354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 454

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 116/377 (30%), Gaps = 53/377 (14%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  ++   L+   +          +IG  +     P      + 
Sbjct: 112 PGAPFVAITGTNGKSTTTALIAHVLAQGGRDVQMG----GNIGTAILSLEPPAADRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + V+  I P HL     +E+ A+ K  + +G         
Sbjct: 168 EMSSFQID----LTPSLDPSVGVLMNITPDHLDRHGTMEQYAAIKERLIQGAGLAVVGVD 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNAD--FQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +        +  +  A  ++     G     D         +  + + +       S+  
Sbjct: 224 DAP---SRAIADRRGADLVRVHVPHGDVLCTDALTVRDGIVREPDGTALADVNGIGSLRG 280

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
            H+     +A  +   L +            +  +      G   R      +G    ++
Sbjct: 281 AHNWQNAAVAVAVARALDLS---------PEQIQAGLTSFPGLPHRMEEVGRRGHVLFVN 331

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S + A++    I          + G   E G      + +         ++H
Sbjct: 332 DSKATNADSTEKALTAFRDI-------HWILGGKAKEGGIFPLVPYFE--------RVAH 376

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLF----LFIQSSLVDGDVVVV---KSS---- 452
            +L G    A    L  ++     ET++           +S     VV++    +S    
Sbjct: 377 AYLIGAASDAFAATLEGAVPYTRCETLENAVPKAAENAAASGAPEPVVLLSPACASYDQF 436

Query: 453 -----NSCGFYRLINLL 464
                    F  L+  L
Sbjct: 437 RNFEIRGNRFRELVQAL 453


>gi|229541201|ref|ZP_04430261.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
 gi|229325621|gb|EEN91296.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Bacillus coagulans
           36D1]
          Length = 451

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/292 (15%), Positives = 89/292 (30%), Gaps = 32/292 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L          RPHIA+IT I  AHL      E  A AK+ I     +
Sbjct: 162 DQQMVVELSSFQLM----GVQTFRPHIAIITNIYEAHLDYHGTKEAYAKAKSNITRNQTE 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN+       L +          +S  +       ++      +   +  +    
Sbjct: 218 DDFLILNHAQPELWDLVS--FTKAKIIPFSTKEYVEDGASVKDGSIMWKGEKIMDRAD-- 273

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N+L  +    ++ A  D     L  F   + R    +        
Sbjct: 274 -----IVLPGDHNLENILAAVAAAKLMGASNDAISGVLGTFKGVKHRT---QYIGEIKGR 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + KAA++   Q         + +L    + G            + +L 
Sbjct: 326 KFYNDSKATNILACKAALAAFHQ--------PVILLAGGLDRGNGFDEL------IPALK 371

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  +   G     L+    ++    +   E ++       +    GD +++
Sbjct: 372 YVKALITFGETAPKLESTAKKAGIPVIRTVENVEEAVPVAWALSEPGDCILL 423


>gi|261345182|ref|ZP_05972826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
 gi|282566874|gb|EFB72409.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rustigianii DSM 4541]
          Length = 447

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 113/371 (30%), Gaps = 30/371 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 93  VLAVAGTHGKTTTAGMLA---WILEDCGYEPGFLIGGVPGNFDVSSKIGNSPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  +E I      +   +  +G I +  
Sbjct: 150 YDCAFFDKRSKFVHYSPKTLILNNLEFDHADIFENLEAIQKQFHHLVRLVPASGKILMPD 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D+  + +            +S  +      + +  K   + S  EV  Q + +  V+  
Sbjct: 210 SDNNLKQVMN-------MGCWSEQELVGEHGEWQAVKLNHDGSRFEVHYQQQKVGEVNWS 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              +      +     +                     R    R   N      + + + 
Sbjct: 263 QVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGVEND---VSVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
            +P ++ A +     +     G    +   + E    +    I+  ++         V+L
Sbjct: 320 HHPTAILATLEA---LRSKVGGTARII--AVLEPRSNTMKMGINKNDIAPALGRADEVFL 374

Query: 407 SGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YR 459
               ++  +   +        H+   +D L   +  +   GD ++V  SN  GF     +
Sbjct: 375 FQPTNIPWMVTEIAEHCVQPAHWHADVDTLANMVIETAQPGDHILV-MSNG-GFGGIHEK 432

Query: 460 LINLLLEEFPA 470
           L++ L ++  A
Sbjct: 433 LLDGLKKKAQA 443


>gi|146310298|ref|YP_001175372.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           sp. 638]
 gi|145317174|gb|ABP59321.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Enterobacter sp.
           638]
          Length = 438

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A +IAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPVIAITGSNGKSTVTTLVGEMAKAAGINV----GVGGNIGLPALML-LDQDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLHAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +           ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCVSFGI------------NMGDYHLNHQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----RVDGTLYLLLGGDGKSADFS-----SLKPYLTGDK 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    +ETM+     I  ++  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELA-ALRPEI-ATQTETMEQAIRLIAPAVQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDLFARLAKEL 437


>gi|90580815|ref|ZP_01236618.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
 gi|90438083|gb|EAS63271.1| putative UDP-N-acetylmuramate-alanine ligase [Vibrio angustum S14]
          Length = 462

 Score = 54.5 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 106/364 (29%), Gaps = 29/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 117 VMAVSGTHGKTTTASMLA--WILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 174

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I     
Sbjct: 175 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILAPKG 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +              +S  +    D   R  K  ++ S  +V L    +       
Sbjct: 235 VKNIDETLE-------MGCWSELEYIGGDGHWRAEKHHADGSVFDVYLDSDIVG--TVHW 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R          T+ D+  + 
Sbjct: 286 PLVGDHNVNNALMAIAAARHVGVKPELACEALAKFINTKRRLELKGEVSGVTVYDDFAHH 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +   + R +AVL    +  ++G         L      +    V+
Sbjct: 346 ---PTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSL------HAADEVF 396

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                ++    + +        + S  +D L   I +    GD ++V  SN  GF  + +
Sbjct: 397 FFQPPNIPWSVEEIAEQCSQPAYCSADLDDLVNNIANKAQPGDTILV-MSNG-GFGGIHD 454

Query: 463 LLLE 466
            LL 
Sbjct: 455 KLLA 458


>gi|289209363|ref|YP_003461429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
 gi|288944994|gb|ADC72693.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. K90mix]
          Length = 448

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/367 (17%), Positives = 114/367 (31%), Gaps = 41/367 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +IAITGS GK+T   ++   L++  +  A       + G P     +   V+  + E
Sbjct: 106 QAPVIAITGSNGKSTVTALVGEILTAAGRKVAIG----GNFGTPALDL-LDPVVEVYVLE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         ++P  A I  I+P H+  +  +     AKA I +           
Sbjct: 161 LSSFQLERSE----QLKPDGAAILNISPDHMDRYPDLAAYIQAKARILDR-------AAR 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +    +        + SFG                 +  +    +         
Sbjct: 210 GVLNRDDPWLRELPLPAGLRVVSFGLDAPLAATDFGVNTGEAEPDLVRGEERLLSTARLR 269

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +       +    +AL+      G   R +          I++S 
Sbjct: 270 LRGQHNWANALAALALAWPWLESLQARSEALAALADFAGLPHRSQWIARVAEVDYINDSK 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA+           G  + + G   +  + S      LA+ +    +  V L
Sbjct: 330 GTNVGATLAALR-------GTPGPLVLIAGGQGKGQDFSP-----LADYV-PGKVRGVVL 376

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +  AL   + V   + M        +    GD V++    +S           
Sbjct: 377 LGEDAPLIARALASVVPVQRVDDMTAAVAQAAAWAQPGDTVLLSPGCASLDMYENYQARG 436

Query: 455 CGFYRLI 461
             F R++
Sbjct: 437 DDFARVV 443


>gi|167580474|ref|ZP_02373348.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           TXDOH]
          Length = 465

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 83/410 (20%), Positives = 143/410 (34%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +        P I VIT I   H+  +             F    +    + +    
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQA---FIEFTQRLPFYGSAVVC 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIG 289
             +    +   L  K +  +G + +A  +    +    +    V +   + + VV +  G
Sbjct: 217 IDDANVRQIVPLISKPVVRYGFAADAQVRAENVEARDGRMHFTVLREGREPLPVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNA 348
            H  QN L  + I + L        +AL+ F+    R +RY       G    + + Y  
Sbjct: 277 LHNVQNALAAIAIATDLDVADTAIQQALAEFNGVGRRFQRYGEIPAAGGGAYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G       +  AL  AL  +  V   +  T+D +   +      GDVV
Sbjct: 393 AAGEAPISTANGDALSRALRAAGKVEPVFVATVDEVPDALAKLARAGDVV 442


>gi|218961094|ref|YP_001740869.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167729751|emb|CAO80663.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 464

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 128/417 (30%), Gaps = 58/417 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + S   + IPV         L  LA   R+      I I G+ GKTT+  M    L
Sbjct: 77  DNPEIVSAYEMKIPVIR----RAEL--LAEITRMSFS---IGIAGTHGKTTSTSMAGSVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S       I               +     + + E       E       + P IA IT
Sbjct: 128 ESAGLEPTIIVGGKVKN---FGSNNVMGSGKYIVVEAD-----EYDHSFLTLTPCIAGIT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL  +  ++EI S+  E    +   G++    DD   + +    H      I ++
Sbjct: 180 NVDADHLDCYRNLDEIKSSFIEYANKVPFFGSVIACLDDPGVQAILPFIHK----KIVTY 235

Query: 251 GKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G S+ AD Q R         S+  +    K   +     G H  QN L+   I   L   
Sbjct: 236 GFSRQADVQARDIDMQGFNSSYDLLFKDYKLGRISLKVTGKHNIQNSLLAASIGLELDIP 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  L  F     R      A     +    + Y  +P  + A +      +     
Sbjct: 296 FPAIQDGLGKFSGVYRRFDLKGEAGGITVY----DDYAHHPTEIIATLEGFKDSAKRR-- 349

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDAL 418
               V      +   ++ F+ +  +    ++   + L+           G     + DA 
Sbjct: 350 ---IVALFQPHLYSRTRDFYEEFGKSF--FSCDCLILAPIYPAREQPIPGISSKLIADAA 404

Query: 419 PRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-------YRLINLLLE 466
            +S H  VH   +   +     + L +GD +++      G          ++  L  
Sbjct: 405 IQSGHHNVHLINSNSEIVSQTLALLKEGD-ILIT----MGAGNIWQYGEEILRQLKN 456


>gi|308048069|ref|YP_003911635.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
 gi|307630259|gb|ADN74561.1| UDP-N-acetylmuramate--L-alanine ligase [Ferrimonas balearica DSM
           9799]
          Length = 486

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 77/401 (19%), Positives = 136/401 (33%), Gaps = 41/401 (10%)

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A +VVV+T +      +         V  V  A   LA   R R     IA+ G+ GKTT
Sbjct: 79  ADVVVVSTAIREENPEIRAARERRIPV--VRRA-EMLAELMRFRHG---IAVAGTHGKTT 132

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  +              +     +         +     + + E   S    +      
Sbjct: 133 TTSLTASLFGQGGLDPTFVIGGKLNSAGTNAQLGLG---RYLVAEADESDASFLH----- 184

Query: 182 VRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           ++P I+V+T I P H+  +   I ++     +    L   G   L  DD   +++  +  
Sbjct: 185 LQPMISVVTNIEPDHMDTYGGDINKLYDTFVDFLHNLPFYGVAVLCLDDPGVQVILPRV- 243

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMT 299
               + I ++G   +AD +   + Q   ++     +     + +V +  G H  QN L  
Sbjct: 244 ---GRRIVTYGFHPDADVRAEDFVQVGTRTQFTLHRPNRDPLPLVLNLPGRHNVQNALAA 300

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +      + D    AL  F     R ++Y          L+ + Y  +P+ +   I  
Sbjct: 301 IAVAMEEGVEDDAIEAALDQFQGIGRRFQQYGEFDTGAGKVLLVDDYGHHPSEVAVTIKA 360

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------G 408
                P        V+         ++  + D   VLS   +  + L            G
Sbjct: 361 ARASWPDR----RLVMVFQPHRFSRTRDLYDDFCAVLSE--VDCLLLMEVYSAGEDLIPG 414

Query: 409 FHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               AL  ++  R I   Y    +GL   +   L DGDVV+
Sbjct: 415 ADSRALCRSIRQRGIDPVYVPGPEGLPALLADQLQDGDVVL 455


>gi|89099607|ref|ZP_01172482.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
 gi|89085760|gb|EAR64886.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus sp.
           NRRL B-14911]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 91/293 (31%), Gaps = 32/293 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
                + EL    L  I       RP IA++T +  AHL       +   AKA I +   
Sbjct: 160 SDHTIVIELSSFQLMGIE----AFRPKIAILTNLYDAHLDYHGTRHDYFEAKANITKNQT 215

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +     +N D      L  +S A  +    S         ++ +   C +  W+    + 
Sbjct: 216 EEDYFIINADQEAVIQLAEESRARIVPFSVS---------RVLEAGACVKDGWICFNGEP 266

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++    +   D     K +S F   + R    +       
Sbjct: 267 VMKREDASLPGNHNLENILSSIAAAKLSGVDNKAIFKVMSSFAGVKHRL---QYIGEVDG 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + K AI+          G            G    +   +L   L+ 
Sbjct: 324 RKFYNDSKATNILATKNAIAAFDVPVILLAG------------GLDRGNGFEELIPSLA- 370

Query: 399 YNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  +   G     +++A  L     +   + +             GDV+++
Sbjct: 371 -NVETLITFGQTAGKIEEAGKLAGIKSIMRVDNVASAVPAAHRLSKPGDVILL 422


>gi|283835150|ref|ZP_06354891.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
 gi|291069450|gb|EFE07559.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Citrobacter
           youngae ATCC 29220]
          Length = 438

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 134/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  + +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAERE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCVSFGI------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +  LN     
Sbjct: 258 NVKEMTLTGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVLNHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +  + L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLG-----GDGKSADFMPLQRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P +     +ETM+     +   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAQLAALRPEA--AEQTETMEQAMRLLAPRVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDVFTRLAKEL 437


>gi|309388994|gb|ADO76874.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium praevalens DSM
           2228]
          Length = 455

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 117/400 (29%), Gaps = 42/400 (10%)

Query: 64  GAGLVV------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA L+V       N   + +     I +    ++L  L K             IA+ G+ 
Sbjct: 64  GADLIVKTSAIPTNNPELKAARKKGIKIVKRAEMLAYLMK---------DKKTIAVAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTT   ML       KK  A        + V   L  +  ++  G  E  ++   E   
Sbjct: 115 GKTTVTAMLAAIFKEAKKDPA--------VMVGGYLKELKGNIADGEGEYFITEADESDG 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P I ++  +   H   +  + E  +         +K   +  N DD     L A
Sbjct: 167 SFLYFEPDILLLNNLELDHPDFYKNLAEFMNIFERFANKNDKEAFLLYNKDDQNLNNLFA 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                      SF  ++             E S+    L    +++     G +   N L
Sbjct: 227 SRKKSS-----SFSLNQANFSAKNIQYNNFESSFELYYLDQFVIKIELSVPGEYNLYNAL 281

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               +   L  D+     AL  F     R       L       + + Y  +P  +K  +
Sbjct: 282 AAAAVSLKLNIDLTALKSALKKFSGVGRRFDFKGKLLEGK--VDLVDDYAHHPTEVKELL 339

Query: 358 SVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             +  ++         PH   R    L D       +   ++      S  N  +     
Sbjct: 340 KTVKNMNYSNIRVVFQPHRYSRTKRFLNDFSYSFLNANQVYLTDIFSASEQN-KYKISLN 398

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                +       +  HY    + +   +   +  GD+++
Sbjct: 399 DFAAEISK--NSQVDCHYYSDFNEIKNKLLKEVKPGDIIL 436


>gi|197285919|ref|YP_002151791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Proteus
           mirabilis HI4320]
 gi|194683406|emb|CAR44151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Proteus mirabilis
           HI4320]
          Length = 436

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 125/376 (33%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS GK+T   ++     +             +IGVP     +    D
Sbjct: 99  FCREAKAPIVAITGSNGKSTVTTLVGEMAKA----DGIPVGVGGNIGVPALTL-LTQPYD 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ +    A +  I+  H++ +  G+E+   AK  I++  +  
Sbjct: 154 LYVLELSSFQL----ETTYSLTAAAATVLNISEDHMNRYPLGLEQYREAKLRIYDNAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       + +     A       SFG  +         +  +      +      
Sbjct: 210 VYNA--------DDVLTLPLAGKDARCVSFGIGQGDYQLDNTNRYLNVNGENLLATSQMF 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   H+      A  +   +GI    +  V      L+           ++   +     
Sbjct: 262 LSGQHNYTNALAALALADAVGISRKASLAVLNTYHGLAHR---------FQLVYSHNGVR 312

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       EG    +LG   +  + S      L   LS  N
Sbjct: 313 WINDSKATNVGSTEAALRGL-----EVEGTLHLLLGGDGKSADFSA-----LLPYLSGDN 362

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G    AL +  P+   +    TM+     +  ++  GD+V++    +S     
Sbjct: 363 I-RLYCFGQDGQALANLRPQVSQLT--ATMEEAMRLLAPTVQTGDMVLLSPACASLDQFK 419

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 420 SFEQRGDEFARLAQEL 435


>gi|94264635|ref|ZP_01288418.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
 gi|93454930|gb|EAT05171.1| UDP-N-acetylmuramate--alanine ligase [delta proteobacterium MLMS-1]
          Length = 463

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 84/432 (19%), Positives = 148/432 (34%), Gaps = 62/432 (14%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA +VV ++ + A    +       +PV        A+  LA   RL+     IA+ GS
Sbjct: 63  AGADVVVTSSAVGADNPEVVAAQEAGVPVI----PRAAM--LAELMRLKVNG--IAVAGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKT+T  M  + L+        +     +              DF + E   S      
Sbjct: 115 HGKTSTTSMAGVVLAEAGLDPTVVIGGQVNS---FGSNAKLGTGDFLVAEADES-----D 166

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P + ++T I   H+ +++ +E + +A  E    +   G   L  DD     L 
Sbjct: 167 GSFVRLSPVLEIVTNIDHEHVDHYADLEAVKAAFLEFINRIPFYGAAILCLDDDNVTALL 226

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQN 295
                     + ++G S  AD Q R+       S  EV  + +   +V     G H   N
Sbjct: 227 PMIRK----RVITYGLSSQADIQAREITTRGFISRFEVWSRQQRLGKVSLAVPGRHNVYN 282

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-- 353
            L  + +   L     T  +AL+ +   + R +       +     + + Y  +P  +  
Sbjct: 283 ALAAIALGRELEIPFATIARALNNYSGVQRRLQ----VKGESDGITVIDDYGHHPTEIRA 338

Query: 354 --------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                        ++    PH   R   +  D C       +FH        L  +++++
Sbjct: 339 TLAALRAAWPRRRLVVLFQPHRYSRTAGLFQDFC------TAFHD-----ADLLILNNIY 387

Query: 406 LSGFH------VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVV-VKSSNSCG 456
            +G          AL  AL R     V Y   +  L   +   L  GDVV+ + + N   
Sbjct: 388 AAGEAEIPEVAGDALALALRRHGQREVSYVPELADLPTAVLGRLQRGDVVLTLGAGNIWR 447

Query: 457 F-YRLINLLLEE 467
               ++  L E+
Sbjct: 448 AGEEILAALAEK 459


>gi|307132582|ref|YP_003884598.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
 gi|306530111|gb|ADN00042.1| UDP-N-acetylmuramate:L-alanine ligase [Dickeya dadantii 3937]
          Length = 486

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 140/411 (34%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+T   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVTSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD+    L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S +AD +L  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 242 KV----GRHITTYGFSDDADVRLADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D D  ++AL+ F     R         +    +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEQGIDDDAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +       ++ L   +  +L   D+V+V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQG 464


>gi|50122848|ref|YP_052015.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613374|emb|CAG76825.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pectobacterium atrosepticum SCRI1043]
          Length = 463

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 115/367 (31%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+T  L         +       GVP          D  F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIG-----GVPGNFTVSARLGDSPFMVLEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   V+  +   H   F  ++ I      +   +  +G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D   + + A          +S  +    +   R  K   + S  +V L  + +  VH
Sbjct: 220 PTNDITLKQVMA-------MGCWSEQELVGEEGVWRAQKVAIDASQYQVYLNNELVGEVH 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      +    L  ++           A           +R      +   T+ D+ 
Sbjct: 273 WKLVGEHNMH--NGLMAIAAAHHVGVLPADACRALGGFINARRRLELRGTEHGVTVYDDF 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             A+  +   A     +    G  R +AVL    +  ++G         L          
Sbjct: 331 --AHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            V+L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  
Sbjct: 383 EVFLFQPTHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV-MSNG-GFSN 440

Query: 460 LINLLLE 466
           + N LLE
Sbjct: 441 IHNKLLE 447


>gi|300309679|ref|YP_003773771.1| UDP-N-acetylmuramate-L-alanine ligase [Herbaspirillum seropedicae
           SmR1]
 gi|300072464|gb|ADJ61863.1| UDP-N-acetylmuramate-L-alanine ligase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 132/409 (32%), Gaps = 48/409 (11%)

Query: 64  GAGLVVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  +V +T +              IP+         +  L    RL+     IAI G+ 
Sbjct: 64  GADAIVTSTAVKGDNPEVLAARKKHIPIV----PRAVM--LGELMRLK---KGIAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +                  +   G  E  ++   E   
Sbjct: 115 GKTTTTSLVASVLAQGGLDPTFVIGGRL--------TSAGANAKLGTGEFIVAEADESDA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               + P I VIT I   H+  ++                 +    +        +    
Sbjct: 167 SFLNLTPVIEVITNIDADHMETYNHDFARLKQAFV---EFTQRLPFYGVAVLCLDDPHVR 223

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNM 296
           +   +  K I ++G  ++AD +    K    +    V   G   M+V  +  G H  QN 
Sbjct: 224 EIMPMVSKPILTYGFHEDADVRAIDAKAVDGKMEFTVIQDGYAPMQVSLNQPGMHNVQNA 283

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANP 350
              + I   L  D     KAL+ F+    R  R      +           + + Y  +P
Sbjct: 284 CAAIAIARELDVDDAATQKALTEFNGVGRRFTRYGEVPLWDAEGKPAGHFTLVDDYGHHP 343

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLS 407
               A I+      P        VL         ++    D  +VLS  ++   + V+ +
Sbjct: 344 VETAATIAAARGAYPGR----RLVLAFQPHRYTRTRDLFEDFVKVLSSPDVLVLAEVYSA 399

Query: 408 GF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
           G          +L  AL  +  V   + + +  +   I++ + DGDVV+
Sbjct: 400 GEAPIVAADGRSLAHALRAAGKVEPVFVDDIGDMPETIRNVVRDGDVVM 448


>gi|121728371|ref|ZP_01681400.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|147675354|ref|YP_001217902.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O395]
 gi|172047586|sp|A5F5M8|MURC_VIBC3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121629362|gb|EAX61793.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae V52]
 gi|146317237|gb|ABQ21776.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 486

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 33/371 (8%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 273 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 333 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 388

Query: 389 HIDLAEVLSLYNISH---VWLSGFHVLALKDALP--------RSIHVHYSETMDGLFLFI 437
           + D A VL   ++     V+ +G   +A  D             I   +      L   +
Sbjct: 389 YDDFANVLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVL 448

Query: 438 QSSLVDGDVVV 448
            + L DGD+V+
Sbjct: 449 ANILQDGDLVL 459


>gi|229521231|ref|ZP_04410651.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229341763|gb|EEO06765.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 506

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 126/373 (33%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S +AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSDDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|153834370|ref|ZP_01987037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
 gi|148869218|gb|EDL68240.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi HY01]
          Length = 452

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 115/371 (30%), Gaps = 37/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +  +         ++  +   AD   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQSLQDVIERGC-------WTEKQFSGADGDWQAHKLVVDGSKFEVSLQGE--KVGIVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGEEQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVW 405
                   +++    +  GE R +AVL         S +    + +     SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVL------EPRSATMKRGVHKNTLAASLHSADEVF 384

Query: 406 LSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           L            + D   +         MD     I      GD ++V  SN  GF   
Sbjct: 385 LFQPDSIDWSVQEIADQCKQ--PAFVDAEMDSFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 458 -YRLINLLLEE 467
             +L+  L ++
Sbjct: 441 HGKLLEQLKQK 451


>gi|284929364|ref|YP_003421886.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
 gi|284809808|gb|ADB95505.1| UDP-N-acetylmuramate--L-alanine ligase [cyanobacterium UCYN-A]
          Length = 501

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/425 (14%), Positives = 134/425 (31%), Gaps = 49/425 (11%)

Query: 55  DFILHAVQKGAGLVVVNTD-MVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
            ++   +       + N +    +      PVF   D+L AL          S    I +
Sbjct: 107 KYLPQVI---CSTAITNDNSEYLAAKKKGCPVFHRSDILAALI---------SDYKSIGV 154

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  ++   L         I             AR+  +  + + E+  S   
Sbjct: 155 AGTHGKTTTSSLIGYMLLEAGIDPTIIIGGEVDA--WDGNARIGAEKGYLVAEVDES--- 209

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                     PHI VIT I   H  ++  ++++ +         +               
Sbjct: 210 --DGSLIKHHPHIGVITNIELDHPDHYQNLDDVINTFQIFAAQCDILVGSLDCEI----- 262

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHM 292
                S  L     YS   +K AD+ ++     ++ +     +      ++    +G H 
Sbjct: 263 ----ISSYLSPHITYSLDFNKQADYTVKNLVNDNKGARAEVWERGIYLGKINLTVLGNHN 318

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   +  +    + +L  F   + R +               + Y  +P+ 
Sbjct: 319 VSNTLAAIAVGRKIGLEFSVIVDSLLNFQSPKRRFE----KRGYCNEITFIDDYAHHPSE 374

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF 409
           +KA +S       +    RI V+         + +     A   +  ++   + ++ +G 
Sbjct: 375 IKATLSAARSKIDNKLANRIVVIFQPHRY-SRTFALLEKFATCFNEADLVVLTDIYSAGE 433

Query: 410 HV-------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLI 461
                       K+       V Y  +++ L   +   L   D+V+       G   ++I
Sbjct: 434 INTNNIYGEDLAKEVSKNHPKVLYFPSLEDLPQKLPELLQPKDLVLF---LGAGNLNQII 490

Query: 462 NLLLE 466
             +++
Sbjct: 491 PHIID 495


>gi|227014294|gb|ACP10504.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O395]
          Length = 506

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 33/371 (8%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISH---VWLSGFHVLALKDALP--------RSIHVHYSETMDGLFLFI 437
           + D A VL   ++     V+ +G   +A  D             I   +      L   +
Sbjct: 409 YDDFANVLEQVDVLLMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVL 468

Query: 438 QSSLVDGDVVV 448
            + L DGD+V+
Sbjct: 469 ANILQDGDLVL 479


>gi|296101251|ref|YP_003611397.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055710|gb|ADF60448.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 438

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A +IAITGS GK+T   ++     +  K          +IG+P  +  +    +
Sbjct: 99  FCREAQAPVIAITGSNGKSTVTTLVGEMAKAAGKNV----GVGGNIGLPALML-LDKGCE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG +       R+  +   +   E  L  K 
Sbjct: 210 VVNADDALTMPVR--------GADDRCISFGITMGDYHLNRQLGETWLRVKGEKVLNVKE 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           M++       +    + +   +         ++++AL+ F     R    + AL      
Sbjct: 262 MKLSGQHNYTNALAALALADAVGL----PRSSSLQALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       EG    +LG     G+   +    L + LS  N
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----EGTLHLLLG-----GDGKSADFTSLKQYLSGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGRELAELRPE--IAEQTETMEQAMRLIAPRVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDLFTRLAKEL 437


>gi|251788251|ref|YP_003002972.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya zeae Ech1591]
 gi|247536872|gb|ACT05493.1| UDP-N-acetylmuramate/alanine ligase [Dickeya zeae Ech1591]
          Length = 486

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+T   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVTSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD+    L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S +AD ++  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 242 KV----GRHITTYGFSDDADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D +  ++AL+ F     R         +    +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEQGIDDEAILRALARFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +       ++ L   +  +L   D+V+V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQG 464


>gi|223041554|ref|ZP_03611755.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
 gi|223017649|gb|EEF16059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor 202]
          Length = 434

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   + T                  +IGVP     +  D +
Sbjct: 100 FCREAKAPIIAITGANGKSTVTTLTTEMAKQAGIKVGMG----GNIGVPALSL-LKGDYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  +                  +  
Sbjct: 155 LYVLELSSFQL----ETTYSLKAKAATILNISEDHMDRY--------------NNSVEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      E +             +  K      Q  ++ + ++  +          
Sbjct: 197 RAAKLRIYQNAENIIVNGEDPLTYPTQAVEKLIRFAEQNAEYSKKNDTLYAYDDAVIGIK 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +++  G    M     M L   + +  +            P      R++          
Sbjct: 257 QMLIRGRHNEMNALAAMALAEAAGIPREGIVKALQTYGGLP-----HRFQAVATNDCVRW 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 312 VNDSKATNVGSTVAALNGL-----EVAGTLYLLLG-----GDGKAADFSELIPLVNKANI 361

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L      S       TM      I+  L  GD+V++
Sbjct: 362 -VCYCFGQDGEQLAKL---STQSVLVATMQEAVEQIRPQLKTGDMVLL 405


>gi|34580726|ref|ZP_00142206.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
 gi|28262111|gb|EAA25615.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia sibirica 246]
          Length = 485

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 129/419 (30%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L        I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +     N      I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNNAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMFCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +        +L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGRSLVDKITKRKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|307244817|ref|ZP_07526916.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253771|ref|ZP_07535625.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258228|ref|ZP_07539971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260467|ref|ZP_07542162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306854262|gb|EFM86468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863255|gb|EFM95195.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867688|gb|EFM99533.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869870|gb|EFN01652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 436

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNDEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLNAVAATILNISEDHMDRY--------------NNSLEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEHNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +        +  +KAL V+     R    +          
Sbjct: 257 TKEMLISGRHNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQV-----AGTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSSQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|67920791|ref|ZP_00514310.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
 gi|67856908|gb|EAM52148.1| UDP-N-acetylmuramate--alanine ligase [Crocosphaera watsonii WH
           8501]
          Length = 503

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 134/418 (32%), Gaps = 46/418 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N    A+      P+F   DVL AL +             IA+ G+ GKTTT  +
Sbjct: 118 TAIGHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSL 168

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         I             AR+     + + E   S     +       P+
Sbjct: 169 IGYMLLKAGVDPTIIVGGEVDA--WEGNARIGARGGYLVAEADESDGSLTKHY-----PN 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I   H  ++  ++++           +                    +  L   
Sbjct: 222 IGIVTNIELDHPDHYQTLDDVVKTFQIFETQCDILIGCLDCETV---------ATQLTPS 272

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVS 304
             YS   +K AD+ +++       +  +V  + K   E+     G H   N L  + +  
Sbjct: 273 ITYSLDSNKGADYTVKQLLSDHNGTTAQVWEKDKYLGEMRLTIPGNHNVSNALAAIAVGR 332

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +      AL  F   + R        +    T ID+   A+  S   A    ++  
Sbjct: 333 KLGLEFSVIADALFTFEGAKRRF---EQRGHCNGVTFIDDY--AHHPSEIEATLSAARCK 387

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISHVWLSGF------HVLALK 415
             G      V          + +F  + +       L  ++ ++ +G           L 
Sbjct: 388 VDGNNISRVVAIFQPHRYSRTATFLKEFSVCFNYADLVVLTDIYSAGEVNRHNISGQDLA 447

Query: 416 DALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEFPA 470
            A+  + H  V Y  ++  L   + S L  GD+V+       G   ++I  ++ ++ A
Sbjct: 448 IAVQDNHHAQVIYEPSLKALNEALTSLLQPGDLVLF---LGAGNLNQIIPQVISQYQA 502


>gi|53729121|ref|ZP_00134085.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207504|ref|YP_001052729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae L20]
 gi|307249215|ref|ZP_07531212.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|126096296|gb|ABN73124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|306858739|gb|EFM90798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 436

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNDEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLNAVAATILNISEDHMDRY--------------NNSLEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEHNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +        +  +KAL V+     R    +          
Sbjct: 257 TKEMLISGRHNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQV-----AGTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSSQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|238786723|ref|ZP_04630524.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238725091|gb|EEQ16730.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 491

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVQIASYRQDGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +      D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIADDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSVMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A +      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATVKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        + +   +   L   D+++V+ 
Sbjct: 414 EPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGNDLILVQG 464


>gi|229507538|ref|ZP_04397043.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
 gi|229355043|gb|EEO19964.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae BX 330286]
          Length = 506

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 123/373 (32%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFNVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I                V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK----RLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|165975474|ref|YP_001651067.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|303251838|ref|ZP_07338009.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307249139|ref|ZP_07531146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|165875575|gb|ABY68623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649268|gb|EFL79453.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854427|gb|EFM86623.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 436

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 107/348 (30%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNDEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLNAVAATILNISEDHMDRY--------------NNSLEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEHNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +        +  +KAL V+     R    +          
Sbjct: 257 TKEMLISGRHNEMNSLAAMALAEAAGIPREGIVKALQVYGGLNHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQV-----AGTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSSQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|310765303|gb|ADP10253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Erwinia sp. Ejp617]
          Length = 450

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 116/370 (31%), Gaps = 38/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M    L +       +       GVP             F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMTAWILQACGYEPGFVIG-----GVPGNFEVSANLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   +  +  I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRAKFVHYCPRTLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    LK            + G++     +           W  +    +  EV  
Sbjct: 220 P---EHDANLKQMMSMGCWSEHEAVGENSCWQVKKLSPDASC---WEVMLDGERVAEVKW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N +M +     +    + A +AL+ F     R +    +     +    + 
Sbjct: 274 SLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRGESNGIKVY----DD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A ++ L      G  R +AVL    +  +MG         L          
Sbjct: 330 FAHHPTAIHATLAALRG-KVGGTARILAVLEPRSNTMKMGISKDDLAPALGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I      GD ++V  SN  GF
Sbjct: 383 EVFLYQPHHIPWQVSEVADACIQ--PAHWSADIDTLVEAIAKVAHPGDTILV-MSNG-GF 438

Query: 458 YRLINLLLEE 467
             +   LLE 
Sbjct: 439 GGIHQKLLER 448


>gi|229514029|ref|ZP_04403491.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
 gi|229349210|gb|EEO14167.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae TMA 21]
          Length = 506

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 128/371 (34%), Gaps = 33/371 (8%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNIS---HVWLSGFHVLALKDALP--------RSIHVHYSETMDGLFLFI 437
           + D A VL   ++     V+ +G   +A  D             I   +      L   +
Sbjct: 409 YDDFANVLEQVDVLIMLDVYAAGERPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPSVL 468

Query: 438 QSSLVDGDVVV 448
            + L DGD+V+
Sbjct: 469 ANILQDGDLVL 479


>gi|254525588|ref|ZP_05137640.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537012|gb|EEE39465.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9202]
          Length = 478

 Score = 54.5 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 110/344 (31%), Gaps = 38/344 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV---DVDFG 163
               I ITG+ GKTT   +L+  L               +IG PL           +D+ 
Sbjct: 119 DTNWIGITGTNGKTTVTHLLSHILCDNGLYAPF----AGNIGTPLCKYACSKKLEKIDWV 174

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    +     ++  V+P+I + TT    HL     +E   + K  + E  +     
Sbjct: 175 VAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFNIKKSLLEKSDFRIYN 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           +        + L+    +L      +    K+   Q   W            ++      
Sbjct: 231 Y------DDKNLRNHYSSLSRGVWITTSLDKSNFIQCDYWIDD-----QAYIVERGKRLF 279

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      N+   L +++ +     +  +        +    R        +  +I+
Sbjct: 280 KLEYFSLRGMHNLQNLLLVIAAVRKVGLSGKEIKDSLSNYKQLPHRMETIYKNNYLEIIN 339

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S  A IS +       EG+ I + G     G L  + + +  +VL    +  
Sbjct: 340 DSKATNFDSSIAGISSI-------EGQMIIIAG-----GRLKGNEYSEWIKVLKK-KVKC 386

Query: 404 VWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDG 444
           ++L G     LK AL        +     +  L  F+   L + 
Sbjct: 387 IFLFGESSKVLKMALINEGFKKSIFEFSELKDLLNFVFHYLQNN 430


>gi|240948408|ref|ZP_04752786.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
 gi|240297234|gb|EER47792.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus minor NM305]
          Length = 434

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 105/348 (30%), Gaps = 42/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   + T                  +IGVP     +  D +
Sbjct: 100 FCREAKAPIIAITGANGKSTVTTLTTEMAKQAGIKVGMG----GNIGVPALSL-LKSDYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A I  I+  H+  ++   E   A         +  
Sbjct: 155 LYVLELSSFQL----ETTYSLKAKAATILNISEDHMDRYNNSVEEYRAAKLRIYQNAENI 210

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +      ++      K      +      K+   D              M ++ +   M
Sbjct: 211 IVNGEDPLTYPTQAVEKLIRFAEQNAEYSKKN---DTLYAYDDAVIGIKQMLIRGRHNEM 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             +        A      +     +   +    +A++                       
Sbjct: 268 NALAAMALAEAAGIPREGIVKALQIYGGLPHRFQAVATNDGV----------------RW 311

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 312 VNDSKATNVGSTVAALNGL-----EVAGTLYLLLG-----GDGKAADFSELVPLVNKSNI 361

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L      S       TM      I+  L  GD+V++
Sbjct: 362 -VCYCFGQDGEQLAKL---STQSVLVATMQEAVEQIRPQLKTGDMVLL 405


>gi|157964317|ref|YP_001499141.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia massiliae MTU5]
 gi|167017283|sp|A8F108|MURC_RICM5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157844093|gb|ABV84594.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia massiliae MTU5]
          Length = 485

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 128/419 (30%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYKDFETLIGAFRSFITNLPFYGFAVCCT 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L        I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +            I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNKAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMLCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +        +L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGQSLVDKITKHKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|306820978|ref|ZP_07454597.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
 gi|304550919|gb|EFM38891.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Eubacterium
           yurii subsp. margaretiae ATCC 43715]
          Length = 448

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 101/321 (31%), Gaps = 39/321 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D    I EL    L         +R HI  I  I P HL      EE   AK  I E   
Sbjct: 153 DNANFITELSSFQL----ESITDLRVHIGAILNITPDHLERHKTFEEYKKAKYRIAENQS 208

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + LN DD   ++       +  K IY   K K  D      ++ +  S +  + Q 
Sbjct: 209 SDDFLILNKDDKEIDI-----KNVKSKVIYFSMKEKLEDGVYYDSERQAIISSLFSKNQE 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  + +G H  +N L  + I       V+   + +  F   + R +  R   +   
Sbjct: 264 IIKRGDINLLGDHNVENTLAAIAIALSDNIPVEIIRQGIKNFVAVKHRLQLVRKIGDV-- 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
            + +++S   N  S   A+  ++       G            G        ++ +    
Sbjct: 322 -SYVNDSKGTNVDSTVKALKAVNTDIILIAG------------GYDKHVDFDEVIK-AFD 367

Query: 399 YNISHVWLSGFHVLALKD-ALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
             +  + L G     ++D AL      +H  + +            + D V++    +S 
Sbjct: 368 GKVKSLLLFGETKYKIRDTALKYGFDKIHIFDNLKDCVQKAYELSENNDTVLLSPACASW 427

Query: 453 --------NSCGFYRLINLLL 465
                       F  L+N L 
Sbjct: 428 DMYKSYEVRGDEFISLVNDLK 448


>gi|171462985|ref|YP_001797098.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192523|gb|ACB43484.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 540

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 106/375 (28%), Gaps = 23/375 (6%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHIG 148
           AL+++A A     +A ++AITG+ GKTTT  +         K           +    + 
Sbjct: 134 ALSRMAQAQESSYEAAVLAITGTNGKTTTAALTGQLCERAGKKVAVAGNISPAALEKLMN 193

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                 ++    D  + EL    L      TH +    A +  I   HL     ++  A 
Sbjct: 194 CLDLADQIVDMSDVWVLELSSFQL----VYTHTLNATAATVLNITQDHLDWHGDMQAYAE 249

Query: 209 AKAEIFEGLEKTGTIF----LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           AK+ IF              +    S  + +       G       G             
Sbjct: 250 AKSRIFGADTVCILNRDDSLVMGLLSDEQKVDKSIVTFGSNRPDEQGAFGIEHDLRAGGI 309

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                + ++  ++ KS       +        L  L     L                  
Sbjct: 310 DWLVWAEVDEDVEPKSKRRRKSAVVEDDEPLRLKRLIPADALRIRGRHNALNALAALALA 369

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC--EMG 382
                    L  G      E +     ++   +  +        G  +A L  +   E+G
Sbjct: 370 RAVNLPMNVLLHGLRDYHGEPHRVQSIAIVRDVEYVDDSKGTNVGATVAALNGLGNNELG 429

Query: 383 E--------LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           +          +          +L  +   ++ G   +A+ +AL   I +     +    
Sbjct: 430 KRIWLIAGGDGKGQDFSPLREPALRFVKGAFVIGKDGVAIGEALGAGIPITNCGDLVSAV 489

Query: 435 LFIQSSLVDGDVVVV 449
             +    + GD+V++
Sbjct: 490 QAVAGQAISGDIVLL 504


>gi|254291802|ref|ZP_04962587.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
 gi|150422314|gb|EDN14276.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae AM-19226]
          Length = 506

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 126/373 (33%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++ +  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLNITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|332283263|ref|YP_004415174.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
 gi|330427216|gb|AEC18550.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pusillimonas
           sp. T7-7]
          Length = 509

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/365 (12%), Positives = 90/365 (24%), Gaps = 16/365 (4%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  +A       +  ++AITG+ GKTT   M    +       A +    +   +   
Sbjct: 118 RALADMADQGY---QPKVLAITGTNGKTTVTAMTRQLV-QASGHTAKVAGNISPAALTAL 173

Query: 153 LARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
              +  D   +  + EL    L         + P  AV+  +   HL     ++  A+AK
Sbjct: 174 SDALAADDLPEVWVLELSSFQL----ESVRTLSPDAAVVLNVTQDHLDWHGSMQAYAAAK 229

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A +            +                         +      +       +   
Sbjct: 230 ARLLGMSRVAIVNRDDPLVMAMADDVKALAVRSFGRDMPVYEGDLGLERSNDMLWLAAAE 289

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             +  L           +     +     L     L                        
Sbjct: 290 ANDFDLPAAPARRKKAAVAPQRPEGRPARLIPADALRVRGQHNALNALAALGLARSLGLG 349

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-----GELS 385
             A+         E++        A +  ++       G  +A L  M        G L+
Sbjct: 350 WAAMLHALRDYAGEAHRTEFVRAVAGVDFINDSKGTNVGATVAALDGMGAPVVLIAGGLA 409

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
           +             +   V L G     +  AL    + V ++  +             G
Sbjct: 410 KGQDFSPLAAAVRAHARAVVLIGQDAGLIGQALAETGVPVEHAVDLGQAVARSIELAQPG 469

Query: 445 DVVVV 449
           D V++
Sbjct: 470 DTVLL 474


>gi|153826877|ref|ZP_01979544.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229524386|ref|ZP_04413791.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
 gi|149739293|gb|EDM53549.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-2]
 gi|229337967|gb|EEO02984.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae bv. albensis
           VL426]
          Length = 506

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 122/373 (32%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S +AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSDDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I                V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKAARNGWAEK----RLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|312795062|ref|YP_004027984.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166837|emb|CBW73840.1| UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) [Burkholderia
           rhizoxinica HKI 454]
          Length = 487

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/421 (15%), Positives = 127/421 (30%), Gaps = 42/421 (9%)

Query: 53  GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           GHD   I      GA  VV++T + A    +       IP+         +  LA   RL
Sbjct: 80  GHDARHID-----GADAVVISTAVHADNPEVLEARRRHIPIV----PRAVM--LAELMRL 128

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     IAI G+ GKTTT  ++   L++       +      +      AR+    DF +
Sbjct: 129 KQG---IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIV 182

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S           + P I VIT I   H+  +             F        I 
Sbjct: 183 AEADES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIA 237

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +   D           +  I       ++      +         +          + + 
Sbjct: 238 VLCVDDPNVREILPFVSKPIIRYGFAQEADVRATHVCARDGRMHFTVHRADAAPLDIVLN 297

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             G          + +     +      +  A      +  +          G + LID+
Sbjct: 298 LPGTHNVQNALAAIAIATELEVADADIQSALAEFNGVGRRFQRYGEVPLTRGGAYLLIDD 357

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS-QSFHIDLAEVLSLYNISH 403
                   ++ A ++ +      + R + V                + +   +    ++ 
Sbjct: 358 Y---GHHPVEMAATIAAARGAFPDRRLVLVFQPHRYTRTRDCFEDFVKVLSTVDALVLTE 414

Query: 404 VWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           V+ +G          AL  A+  +  V   + +T+D +   + + + DGDVV+   + S 
Sbjct: 415 VYAAGEAPIVAADGRALARAIRVAGRVEPVFVDTLDEIPDALAAMVADGDVVMTMGAGSI 474

Query: 456 G 456
           G
Sbjct: 475 G 475


>gi|229586496|ref|YP_002844997.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia africae ESF-5]
 gi|259509780|sp|C3PMU4|MURC_RICAE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|228021546|gb|ACP53254.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia africae ESF-5]
          Length = 485

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 128/419 (30%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       VV+++ +      +       IP+    D       LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYVVISSAINPKNPEIKEALERKIPIIRRAD------MLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L        I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +     N      I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNNAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +       D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQYLFDDFMFCFAD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++ +G +         L D + +  H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAAGENPIEGITGRNLVDKITKRKHHDKANFLAELDDAVGVIIDNAASGDMI 455


>gi|329122141|ref|ZP_08250749.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
 gi|327466948|gb|EGF12464.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Dialister
           micraerophilus DSM 19965]
          Length = 449

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 82/300 (27%), Gaps = 33/300 (11%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 +P  A I  I P HL     +E    AKA IFE +     I LN DD +   L 
Sbjct: 166 EFIKNFKPKTAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILLNADDKYTNELT 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             ++      ++S  K+ +    L   +        +        +      G     N 
Sbjct: 226 EMANKHTNVCLFSIQKNIDNGAFLDGEELVI---SYKGNKINICNKNELQIKGKQNYANA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +       ++    AL  F     R                ++S   N  +    
Sbjct: 283 LAASFLAFFSGISLEAIRAALKEFKGLPHRI---EFVRKFKNINYYNDSKATNTDASIKG 339

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    +      G            G        +  + +   +   + L G      + 
Sbjct: 340 MEAFDKPVILIAG------------GHDKGIPLSEYMKKVKE-HTKELILIGEATERFEK 386

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLIN 462
              +    ++  ++ M+            GD++++             +     F R++N
Sbjct: 387 VAIKEGVSNITRAKDMEDAVYKATKFAEAGDIIILSPACSSFDMYKNMAERGNDFKRIVN 446


>gi|317969026|ref|ZP_07970416.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CB0205]
          Length = 459

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 108/388 (27%), Gaps = 45/388 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +++ A         I ITG+ GKTT   ++   L          G+  +          
Sbjct: 98  GEISTAWEASGSTPWIGITGTNGKTTVTHLVAHLLKQGGIDAPMCGNVGHSAAELALERF 157

Query: 156 MPVDVDF--GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                     + EL    +         + P I + TT+ P HL     +E   + K  +
Sbjct: 158 SDGQTRPQALVVELSSYQI----ESAPELAPAIGLWTTLTPDHLERHGTLENYRAIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E         LN DD       A           +    + A  +        E + + 
Sbjct: 214 LERSA---IQVLNGDDPDLCAHAATWPNA---RWITASSREAALAKGIDPWLWIEGNQVM 267

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +             G H  QNMLM L +   L         AL  F     R +  R  
Sbjct: 268 ERSGALLPANALAMPGAHNRQNMLMALAVGLELGLSGPAMEAALRAFPGVPHRLELIRSL 327

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   I++S   N  + + A+  +       EG  +A+ G   + G+ S        
Sbjct: 328 DGVD---WINDSKATNYDAAEVALRAV-------EGPLVALAGGEAKQGDASAWI----- 372

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGD--VVV 448
                 +   V L G      ++ L    +   +   + +       +          V+
Sbjct: 373 -AALQRSAKAVVLFGAAQSHFQELLLSGGYTGVIQCCDALPEAVAAARQLSQREHCRAVL 431

Query: 449 V---KSS---------NSCGFYRLINLL 464
           +    +S             F  L   L
Sbjct: 432 LSPACASFDQYRDFEARGEHFRSLTEGL 459


>gi|294635007|ref|ZP_06713524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
 gi|291091606|gb|EFE24167.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Edwardsiella
           tarda ATCC 23685]
          Length = 438

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 111/372 (29%), Gaps = 48/372 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAHAAGW----PVGVGGNIGVPALTL-LKQECR 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      TH ++   A I  ++  H++ +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTHSLKAAAATILNVSEDHMNRYPLG-------LQQYRAAKLRI 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +               SFG         R+  +   +   E  L    M
Sbjct: 203 YEQARACVVNADDALTMPIHGADARCVSFGVDVGDYHLNRQQGEIWLRVRGEKILNTSEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++  L+      
Sbjct: 263 QLTGMHNYTNALAALALADAVGL-------PRASSLRALTTFRGLAHRFQLVLDHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA+  L     H  G    +LG     G+   +    L   L    I
Sbjct: 316 INDSKATNVGSTEAALKGL-----HLNGTLHLLLG-----GDGKAADFTPLLPYLQGERI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L    P         TM+     I   L  GD+V++    +S      
Sbjct: 366 -RLYCFGRDADPLMQLRPEVS--LRFTTMEQAMRAITPQLRSGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLI 461
                  F RL 
Sbjct: 423 FEQRGDEFARLA 434


>gi|260589604|ref|ZP_05855517.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
 gi|260540172|gb|EEX20741.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Blautia
           hansenii DSM 20583]
          Length = 457

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 102/336 (30%), Gaps = 40/336 (11%)

Query: 146 HIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T A +   +  + + E+    L  I        P ++ I  I   HL+    +E
Sbjct: 146 NIGNPYTDAALSMTEDSYTVAEISSFQLETIDTFA----PKVSAILNITEDHLNRHHTME 201

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  I     K     LNY+D        +  A    T++   + K          
Sbjct: 202 EYIRVKELITANQTKEDYCILNYEDEVLRAFGERCPAK---TVFFSSERKLEKGAFLDGD 258

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               ++  E              +G H  +N++    +       V+   KA++ F    
Sbjct: 259 AICLKTDTETLE--IVKTGELKILGKHNYENVMAASAMAYYTGVPVEVIHKAITEFRAVA 316

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R                ++S   NP +    I  +++ +    G            G  
Sbjct: 317 HRI---EFVDEINGIAYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYD 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLV 442
            +S + +  +      + ++ L G     +++   +   V    ++ ++           
Sbjct: 362 KESSYEEWIQSFD-GKVKYLVLIGQTREKIQEVAHKCGFVNTILADNLEEAVSMCTQKAE 420

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLLLE 466
            GD V++    +S             F   +  L +
Sbjct: 421 KGDAVLLSPACASWGQFDNYEQRGDKFKEYVYALKK 456


>gi|169831592|ref|YP_001717574.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638436|gb|ACA59942.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 455

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 134/404 (33%), Gaps = 52/404 (12%)

Query: 64  GAG-LVVVNTDMVASIGSL------SIPVFGVDDVL-GALNKLAVAARLRSKATIIAITG 115
           GA  LVV ++ +      L       +PV          L +L            IA+ G
Sbjct: 63  GAAELVVYSSAIPPDNPELVIARKRGLPVI----PRAEMLGRLMHQW------KGIAVAG 112

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTTT  ++   L         I     +              ++ + E   S     
Sbjct: 113 AHGKTTTTSLVAFLLERTGLDPTVIIGGEMNG----FGNAKAGGGEYLVAEADES----- 163

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                L+ P I ++T +   HL  +  ++ I  A  E    + + G   LNYDD F   +
Sbjct: 164 DGSFSLLHPSIVIVTNVEDDHLDYYRTVDAIRRAFREFIFKVPRDGVAVLNYDDPFLRQM 223

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             +        + ++G + +AD++L  +       S      +           G H   
Sbjct: 224 AHEL----PFPVITYGCAPDADYRLAGFHLNCAVSSAEVYWRRELLGRFELTIPGRHNLL 279

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L  +     +AL  F     R +     + +     + + Y  +P  +K
Sbjct: 280 NALAVVAVGRHLGLEFPEIARALRDFRGVRRRFE----LVGESRGVRVVDDYAHHPTEIK 335

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF-- 409
           A +    Q  P        +          ++  H +  +  +  +   +S ++ +G   
Sbjct: 336 ATLEAARQTRPKR-----LIAVFQPHRYTRTKFLHAEFGKAFTAADQVLLSRIYPAGEKP 390

Query: 410 ----HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                   ++D + +   V     E  D L   + S + +GD+V
Sbjct: 391 IPGVTARLIRDEIQKQQRVEPLLFEEQDELVAHLASVVREGDLV 434


>gi|153813506|ref|ZP_01966174.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
 gi|149830377|gb|EDM85469.1| hypothetical protein RUMOBE_03926 [Ruminococcus obeum ATCC 29174]
          Length = 459

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 135/411 (32%), Gaps = 49/411 (11%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +    A      IP+          L ++          T IA+ G+ GKTTT 
Sbjct: 76  TAAIHPDNPEFACAKEKGIPML----TRAQLLGQIMRNY-----DTSIAVAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML+  L   +              V   L  +  ++  G  E  ++   E         
Sbjct: 127 SMLSHILLKGECDPTIS--------VGGILPAIGGNIRVGQSETFLTEACEYTNSFLSFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +I  I   HL  F  I++I  +     E L   G + +N D   +E++        
Sbjct: 179 PTIGIILNIDADHLDFFKDIDDIRHSFRTFAELLPAEGALIINADTPKYEMITENL---- 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS--EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + ++G   +A++             ++  +              G H   N L ++ 
Sbjct: 235 PCKVITYGLEHDAEYTATDITYDELGHATFHVLHNGEDLGTCSLKVPGIHNVSNALASIA 294

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-- 359
              +L    +     L  F   + R +      +      I + Y  +P  ++A +    
Sbjct: 295 AGQLLDLSTEVIFDGLKDFGGTDRRFQYKGKIGD----VTIIDDYAHHPTEIEATLHAAK 350

Query: 360 -------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                       PH   R  A+L +  +   L+ + H+ LA++ +     ++   G    
Sbjct: 351 NYPHKKIWCVFQPHTYTRTKALLPEFAK--ALTLADHVVLADIYAARETDNL---GISSR 405

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            L++ +        Y  T D +  F+  +   GD +++      G   ++N
Sbjct: 406 NLQEKIVELGTPCEYFPTFDEIENFLLENCTQGD-LLIT----MGAGDVVN 451


>gi|153214069|ref|ZP_01949203.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
 gi|124115495|gb|EAY34315.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 1587]
          Length = 486

 Score = 54.1 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 126/373 (33%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S +AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSDDADVRIENYRQNGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 273 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 333 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 447 VLANILQDGDLVL 459


>gi|283769653|ref|ZP_06342549.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
 gi|283103921|gb|EFC05307.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bulleidia
           extructa W1219]
          Length = 430

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 120/392 (30%), Gaps = 65/392 (16%)

Query: 91  VLGALNKL------AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           VL A  +L      +       +  +I ITG+ GK+TT  ++   L   KK         
Sbjct: 80  VLKAEQELETISSQSELFIKMYRNQVIGITGTKGKSTTSSLVYSLLKQEKKV-----VLV 134

Query: 145 NHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IG P         +    +FEL        +     V P+IAV+  +   HL ++   
Sbjct: 135 GNIGKPCFEEIEAMEEGALAVFELS-----CHQMEYTRVSPYIAVLLNLYEEHLDHYGSF 189

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E+   AK+ I+                     +    A+    + SF       + L K 
Sbjct: 190 EKYGLAKSHIYSYQ------------------QDNDLAIVPMNLPSFLPKPETAWYLEKE 231

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               +  +     Q    +    G        + + + +   ++                
Sbjct: 232 VFVKDGYFFNPLGQLIIPKTKLIGYHNEQNMAIAVAIAMKLGISEKGIQ-----KGLETF 286

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E    R            +++S +    S   A+  L          +  ++G M     
Sbjct: 287 EPLEHRLEYVGIYQGIHYVNDSISTIGQSCIQAMESL-------PLVQTVLIGGM----- 334

Query: 384 LSQSFHIDLAEVLSLY-NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                + +L + +  + N  ++++       L +   R  + ++ ET+       +    
Sbjct: 335 DRGIGYQELEDYIQKHPNHHYIFMYATGRRILSELGKREKNFYFVETLKEAVCLAKRITE 394

Query: 443 DGDVVVVK--SS----------NSCGFYRLIN 462
            G +V++   +S            C F  ++ 
Sbjct: 395 RGKMVLLSPAASSYDSFKNFEDRGCQFKNMVK 426


>gi|91228512|ref|ZP_01262434.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
 gi|91187946|gb|EAS74256.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           alginolyticus 12G01]
          Length = 437

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 127/372 (34%), Gaps = 56/372 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            +IAITGS GK+T  ++  +  ++             +IGVP     +  D D  + EL 
Sbjct: 109 PVIAITGSNGKSTVTDLTGVMANAAGLDV----GVGGNIGVPALDL-LEQDADLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++   A    ++  H+  + G+ +   AK  IF              
Sbjct: 164 SFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMSDYRQAKLRIFNH----------AA 209

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +       ++       + +FG     D Q    +    ++W+    Q          +
Sbjct: 210 LAVVNRDDQETFPDAEMPLVTFGS----DNQDFGLEVDGNRTWLLDHGQRVVASDELKLV 265

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L+ L ++     +   A+  L  +     R    +   +      +++S   
Sbjct: 266 GKHNLSNALVALALLKAADVNYHKALNTLKNYTGLTHRC---QVVADNQGVKWVNDSKAT 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+S L        G+   ++G + +  + S      L  + +  N+  +   G
Sbjct: 323 NIASTMAALSGL-----ESTGKLYLLVGGVGKGADFSP-----LKPIFATLNL-QLCCFG 371

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                    +P        +TM+ +   + S L  GD+V++    +S             
Sbjct: 372 ADGDEF---MPLHESAIRFDTMEDVIQQVSSQLKPGDMVMLSPACASFDQFDNFMARGDA 428

Query: 457 FYRLINLLLEEF 468
           F      L +++
Sbjct: 429 F----AALAQKY 436


>gi|269127138|ref|YP_003300508.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
 gi|268312096|gb|ACY98470.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermomonospora
           curvata DSM 43183]
          Length = 469

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 98/350 (28%), Gaps = 37/350 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A  +A+TG+ GKTTT  ML   L +       +     ++G P+  A +    D    EL
Sbjct: 113 APWLALTGTNGKTTTVRMLACILRAAGHRAPAV----GNVGTPIVEAALDPSCDVLAVEL 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L     L     P    +  +AP HL     +E  A+ K +I+           + 
Sbjct: 169 SSYQLHWSSSLA----PEAGAVLNVAPDHLDWHGSLEAYAADKGKIYAPGTVAVFNADDE 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +       ++    +            D          ++++     +  +       
Sbjct: 225 ISTRLAAGAERAVGFTLGIPAPGQLGVVED-------LLVDRAFTGDPRREAAELAQLSD 277

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      N+   L   ++  A                    R            ID+S  
Sbjct: 278 VRPFAPHNVANALAAAALARAHGVPPQAVAEGLRAFVPDPHRIAHVATVNGVDYIDDSKA 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP +  A+++          G            G          A  L         L 
Sbjct: 338 TNPHAAAASLAACESAVWIAGGLLK---------GADVTELVRSCAPRLRAA-----VLI 383

Query: 408 GFHVLALKDALPRS--------IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G     + +AL R         I   ++ TMD +          GD V++
Sbjct: 384 GADRAKIAEALARHAPEVPVVDIPDTHTGTMDIVVAEAARLARPGDTVLL 433


>gi|307111173|gb|EFN59408.1| hypothetical protein CHLNCDRAFT_137921 [Chlorella variabilis]
          Length = 873

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 13/150 (8%)

Query: 22  VPQGFVNGI-SIDSRSIAPQEAFFAIKGP--HYDGHDFILHAVQKGAGLVVVNTDMVASI 78
            P   +  I + +S S      +  +       DGHD+   A + GA  V+    +  ++
Sbjct: 285 APDVDIRNILTCNSISGGEDSLYVCVPSADGQCDGHDWADEASEMGAVAVIAGRPLPDAL 344

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               +PV  VDDV  AL  LA A   R       + + GS GKTTT  +         + 
Sbjct: 345 ----LPVVVVDDVAAALGSLADAFYERPSRRMRTVGVVGSYGKTTTAWLSRGMFEETAER 400

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              IG+        L   R+  + +  + E
Sbjct: 401 CGMIGTIEY----ALEEVRLTEEGEVWVAE 426


>gi|238918676|ref|YP_002932190.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Edwardsiella
           ictaluri 93-146]
 gi|238868244|gb|ACR67955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Edwardsiella ictaluri 93-146]
          Length = 438

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 64/372 (17%), Positives = 114/372 (30%), Gaps = 48/372 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCREAQVPIVAITGSNGKSTVTTLVGEMACAAGWQV----GVGGNIGVPALSL-LKHECR 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +R   A I  ++  H++ +           + +   +   
Sbjct: 154 LYVLELSSFQLETTA----SLRAAAATILNVSEDHMNRYPLG-------LQQYRAAKLRI 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +               SFG     D       +   + W+ V+ +    
Sbjct: 203 YENARACVVNADDALTMPIHGADTRCVSFG----VDVGDYHLNRQQGEIWLRVRGEKILN 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +     ++++AL+ F     R    +  L       
Sbjct: 259 TKEMQLTGIHNYTNALAALALADAVGLPRASSLRALTTFRGLAHRF---QLVLEHSGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA+  L     H  G    +LG     G+   +    L   L    I
Sbjct: 316 INDSKATNVGSTEAALKGL-----HLNGTLHLLLG-----GDGKDADFTPLLPYLRGDRI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L   L R       +TM+     +      GD+V++    +S      
Sbjct: 366 -RLYCFGRDAGPLM--LLRPEVSRRFDTMEQAMRALAPLTRAGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLI 461
                  F RL 
Sbjct: 423 FEQRGDEFARLA 434


>gi|115350518|ref|YP_772357.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
 gi|122324103|sp|Q0BIK0|MURC_BURCM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115280506|gb|ABI86023.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           AMMD]
          Length = 465

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 89/432 (20%), Positives = 156/432 (36%), Gaps = 40/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD    A   GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAANIA---GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A ++      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATVAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +     DAL R++         +  ++D +   +     +GDVV+   + S G 
Sbjct: 393 AAGEAAITTANGDALSRALRAVGRVDPVFVASVDDVPDALAGVARNGDVVITMGAGSIGG 452

Query: 458 --YRLINLLLEE 467
              +++  + ++
Sbjct: 453 VPAKIVQHIQQK 464


>gi|121587635|ref|ZP_01677399.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|153818410|ref|ZP_01971077.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|20532180|sp|Q9KPG8|MURC_VIBCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121548145|gb|EAX58218.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 2740-80]
 gi|126511043|gb|EAZ73637.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae NCTC 8457]
 gi|327484896|gb|AEA79303.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 486

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 127/373 (34%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 109 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 160

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 161 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 216

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 217 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 272

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 273 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 332

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 333 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 388

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 389 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 446

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 447 VLANILQDGDLVL 459


>gi|15642397|ref|NP_232030.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|153803321|ref|ZP_01957907.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|153822230|ref|ZP_01974897.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227082523|ref|YP_002811074.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229512266|ref|ZP_04401745.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229519402|ref|ZP_04408845.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229528613|ref|ZP_04418003.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229607044|ref|YP_002877692.1| UDP-N-acetylmuramate--L-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254849522|ref|ZP_05238872.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297581027|ref|ZP_06942952.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|298500240|ref|ZP_07010045.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
 gi|9656973|gb|AAF95543.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|124121139|gb|EAY39882.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MZO-3]
 gi|126520240|gb|EAZ77463.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|227010411|gb|ACP06623.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae M66-2]
 gi|229332387|gb|EEN97873.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae 12129(1)]
 gi|229344091|gb|EEO09066.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae RC9]
 gi|229352231|gb|EEO17172.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae B33]
 gi|229369699|gb|ACQ60122.1| UDP-N-acetylmuramate--alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845227|gb|EET23641.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MO10]
 gi|297534853|gb|EFH73689.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae RC385]
 gi|297540933|gb|EFH76987.1| UDP-N-acetylmuramate-alanine ligase [Vibrio cholerae MAK 757]
          Length = 506

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 127/373 (34%), Gaps = 37/373 (9%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           V  A   LA   R R     IA+ G+ GKTTT  ++T   S        +          
Sbjct: 129 VRRA-EMLAELMRFRHG---IAVAGTHGKTTTTALVTQIYSEAGLDPTFVNGGLVK---- 180

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
                   +   G   + ++   E       ++P + ++T I   H+  +    E +   
Sbjct: 181 ----SAGTNARLGSSRILIAEADESDASFLHLQPMVTIVTNIEADHMDTYGGDFENLKQT 236

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +    L   G   L  DD     L  +      + + ++G S++AD ++  ++Q   +
Sbjct: 237 FIDFLHNLPFYGQAILCIDDPVIRELIPRV----SRQVITYGFSEDADVRIENYRQNGQQ 292

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
             +  V+    ++++  +  G H A N    + + +      +  ++A++       R  
Sbjct: 293 GQFTVVRKGKANLDITLNIPGRHNALNAAAAIAVATEDDIRDEAILRAMANTQGTGRRFD 352

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       ++ + Y  +P  +   I      + +G   +  V+         ++  
Sbjct: 353 HLGEFETGNGVAMLVDDYGHHPTEVDVTIKA----ARNGWAEKRLVMIFQPHRYTRTRDL 408

Query: 389 HIDLAEVLSLYNISHVW-----------LSGFHVLALKDALPRSIHV--HYSETMDGLFL 435
           + D A VL    +  +            ++G    +L   +     +   +      L  
Sbjct: 409 YDDFANVLEQ--VDVLIMLDVYAAGEKPIAGADGRSLCRTIRSRGKIDPIFVPDSQTLPS 466

Query: 436 FIQSSLVDGDVVV 448
            + + L DGD+V+
Sbjct: 467 VLANILQDGDLVL 479


>gi|154485087|ref|ZP_02027535.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
 gi|149734040|gb|EDM50159.1| hypothetical protein EUBVEN_02810 [Eubacterium ventriosum ATCC
           27560]
          Length = 454

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 96/333 (28%), Gaps = 29/333 (8%)

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             +  I   Y        +IG P T        D  +    +S         H  +P ++
Sbjct: 125 ALVGEIMANYYDKVDVVGNIGNPYTTT-AFDSTDDTVTVAEISSF--QLETIHTFKPDVS 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            +  I P HL+    +E     K  I +  +    I LNY+D        K     I   
Sbjct: 182 AVLNITPDHLNRHYTMECYTDVKMSIAKNQDSNQPIVLNYEDPILREYAGKLTNRIIWFS 241

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                +     + +       +    V     +  V  H +   M       + I   + 
Sbjct: 242 SKQKVNPGVYLEGKNIIYADGKKETFVTTTEDTTLVGIHNVENIM-----AAIAISINMD 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             VD   + +  F     R                ++S   N  +   AI  +S+ +   
Sbjct: 297 VPVDIIRETIRKFKAVPHRI---EYVETINDVIYYNDSKGTNTDASIKAIEAMSRPTILI 353

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVH 425
            G            G   +    D AE      +  + L G     + D + +    ++ 
Sbjct: 354 AG------------GYDKKVSFDDWAE-AFGDKVKCLVLLGQTAEQIADTVKKHGFTNII 400

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
           ++E++         +   GD V++    +S   
Sbjct: 401 FTESLKEAVDECAKNAKPGDAVLLSPACASWGM 433


>gi|292490625|ref|YP_003526064.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579220|gb|ADE13677.1| UDP-N-acetylmuramate/alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 476

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 68/366 (18%), Positives = 123/366 (33%), Gaps = 35/366 (9%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R R     IA+ G+ GKTTT  ++   L         +     +           
Sbjct: 109 LAELMRFRYG---IAVAGTHGKTTTTSLIAGILGEGGFDPTFVIGGRVNSIGANGRLG-- 163

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEG 216
              ++ + E   S    +      ++P +AV+T +   H+  +      + +A  E    
Sbjct: 164 -SGEYLVAEADESDASFLH-----LQPLLAVVTNVDADHMGTYGGDFTALKAAFLEFLHH 217

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME--V 274
           L   G   +  +D     L        +    ++G  ++AD++LR+ K    ++      
Sbjct: 218 LPFYGLAVVCLNDPVLRELLPDIGRPVL----TYGTCEDADYRLRELKHVQGRTQFRVAR 273

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 + VV +  G H A N L  + +   L A+     +AL  F     R + Y    
Sbjct: 274 PGNDNWLTVVLNLPGAHNALNALAAMVVAHELGAEDAAIQRALEGFSGIGRRFQCYGEIA 333

Query: 335 NQGFFTLIDESYNANP----------ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                 L+ + Y  +P           +      V+    PH   R   +  D  E   L
Sbjct: 334 TPRGRVLLVDDYGHHPRELTATLEALHAGWPGRRVVVVFQPHRYTRTRDLFEDFIEALSL 393

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLV 442
           +    +          I     +G     L  A+  + HV     E M+ +   +   L 
Sbjct: 394 ADVLLLLEVYPAGEEPI-----AGADSRTLGQAIRANGHVDPIGVEDMETIEEVLLGVLQ 448

Query: 443 DGDVVV 448
           +GDV++
Sbjct: 449 EGDVLL 454


>gi|260596513|ref|YP_003209084.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cronobacter
           turicensis z3032]
 gi|260215690|emb|CBA28025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cronobacter
           turicensis z3032]
          Length = 438

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +    +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LEEGRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTFSLKAAAATILNVTEDHMDRYPLGLQQYRAAKLRIYENATVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCVSFGI------------DVGDYHLNRQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +         +++KAL+ F     R    + A       
Sbjct: 258 NVKEMKLVGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRF---QLAYEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLAHYLTGDRV---- 365

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              ++  G    AL    P        ETM+     I   +  GD+V++    +S     
Sbjct: 366 --RLYCFGRDGDALAALRPEV--AERMETMEEAMKVIAGRVTPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDVFTRLAKEL 437


>gi|78065122|ref|YP_367891.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
 gi|109892696|sp|Q39JW9|MURC_BURS3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77965867|gb|ABB07247.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. 383]
          Length = 465

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 147/410 (35%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD +   ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAVN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V   G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIRDGRAPLAVVLNMPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY       G    + + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPAADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            +G   ++    DAL R++         +  T+D +   +     +GDVV
Sbjct: 393 AAGEAAISTANGDALSRALRTVGKVDPVFVATVDDVPDALAKVAQNGDVV 442


>gi|302206518|gb|ADL10860.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis C231]
 gi|308276760|gb|ADO26659.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis I19]
          Length = 485

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 132/397 (33%), Gaps = 42/397 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +   L IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 87  DNPELVAARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSMAVVAM 137

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +     +          +            D  + E   S    +R+     +P+IAVI
Sbjct: 138 QAAGMDPSFAIGGQ----LNKAGTNAHQGTGDAFVAEADESDASLLRY-----KPNIAVI 188

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY- 248
           T I P HL  F   E       +  + L    ++ +  DD    +L  K H         
Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEKHKDIKVV 248

Query: 249 -------SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  S      A   +  ++     +   + + G+  EVV    G HM  N    L 
Sbjct: 249 GYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAALT 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISV 359
              I   D+      +S F     R + +      +     L D+  +          + 
Sbjct: 309 AGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTAA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFH 410
            +++   G+GR + +      +   + +F  + A  LSL + + V            G  
Sbjct: 369 RAKLQARGQGRLLVIFQP--HLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPVEGVD 426

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + D +  +I  H+      +   +      GD+V
Sbjct: 427 SRIITDKM--TIPAHFEPDFSHVPEAVADLAAPGDLV 461


>gi|218661065|ref|ZP_03516995.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate/D-alanyl-D-alanyl ligase [Rhizobium
          etli IE4771]
          Length = 47

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ 40
          M+ LWT  D++ A+ G   G +P+G + GISIDSRSI+P 
Sbjct: 1  MSWLWTTEDMIAAMAGRPFGTLPEG-ITGISIDSRSISPG 39


>gi|258511796|ref|YP_003185230.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478522|gb|ACV58841.1| UDP-N-acetylmuramate/alanine ligase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 463

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 145/404 (35%), Gaps = 49/404 (12%)

Query: 64  GAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV +T +           +L+IPV         +  LA     R     IA+TG+ 
Sbjct: 63  GADIVVHSTAVKQDNVELQAARALNIPVIH----RSEM--LARLMDDRVG---IAVTGAH 113

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+  A+         I          L          F + E   S    + +
Sbjct: 114 GKTTTTSMIAFAMEQNGLDPTFIVGGVVAD---LGDNAKAGKGPFVVAEADESDGSFLHY 170

Query: 178 LTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                RP IAV+T + P HL ++    E +  A       +   G + ++ DD     L+
Sbjct: 171 -----RPAIAVVTNVEPDHLEHYDGKFENLVRAYETFIRQIPSEGLLVMSADDDKLRELR 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQN 295
           +         + ++G +++AD   R  +     S  +V + GK +  +     G H   N
Sbjct: 226 SA----ARCRVVTYGFAEDADITARHVELGDRASRSDVLVNGKFVGTLQLALPGKHNVLN 281

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +    + A  ALS FH  + R +      +     LI + Y  +P  ++A
Sbjct: 282 ALAAIAVCMEVGLSFEAAAGALSRFHGAKRRFQVVAEVGD----VLIVDDYAHHPTEIRA 337

Query: 356 AISVLS--------QISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWL 406
            I+              P    R   +  +  +  GE  +    D+        I     
Sbjct: 338 TIAAAKSTGRRIVAVFQPQRYTRTFFLFEEFAKAFGEADEVILCDIYSPAGERKID---- 393

Query: 407 SGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            G     L   + R  + H  Y  T D +  ++  S+  GD+V+
Sbjct: 394 -GVSAARLASEIARMSNPHTRYIPTHDDVIEYLVQSVRPGDLVL 436


>gi|116073647|ref|ZP_01470909.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
 gi|116068952|gb|EAU74704.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RS9916]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 112/388 (28%), Gaps = 51/388 (13%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLT 152
            ++AVA    S    I ITG+ GKTT   +L   LS           +G     + +  +
Sbjct: 96  GEMAVAWDALSHRPWIGITGTNGKTTVTHLLQHVLSHAGLQAPMAGNVGHSAAELALACS 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +P   D+ + E+    +         V P I + TT+ P HL     ++   + K  
Sbjct: 156 SGHLPQ-PDWIVMEMSSYQI----EAAQQVAPRIGIWTTLTPDHLERHGTLDAYRAIKHG 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +    E+             +L +          + +              +      W+
Sbjct: 211 LLARSEQAVLNA-----DDPDLCRHHHQWPAATWVSTSPTPPVPCTLWIDPE-----QWV 260

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             + Q           G H  QNML+                 AL  F        R   
Sbjct: 261 CSREQRLFPADALPLPGNHNRQNMLLVTAAALHAGLPPSAIEAALRCFSGV---PHRLEP 317

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                   + ++S   N  +    +  ++  +    G +        + G+ S+      
Sbjct: 318 LGLVKGMRVYNDSKATNYDAAAVGLRAVAAPAVVLAGGQT-------KQGDASEWL---- 366

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSL--VDGDVV 447
              L     + V L G     LK  +  +     V   +T+D       +         +
Sbjct: 367 --SLLKERAAAVVLFGHGARELKTLIAGASFDGQVALVDTLDAAVKEALALSSGQPAQAL 424

Query: 448 VV---KSS---------NSCGFYRLINL 463
           ++    +S             F +LIN 
Sbjct: 425 LLSPACASFDQYSNFEERGEHFRQLINA 452


>gi|32490957|ref|NP_871211.1| hypothetical protein WGLp208 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30316007|sp|Q8D2Z4|MURD_WIGBR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25166163|dbj|BAC24354.1| murD [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 438

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 137/412 (33%), Gaps = 52/412 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L++++  +     SL   +      +  +  + + AR  S+  IIAITGS GK+T   
Sbjct: 66  AKLIIISPGVSLYHPSL---IIAKKLNIEIIGDIELFAREASR-PIIAITGSNGKSTVTS 121

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+     +   +         ++G P             I EL    L      T  ++ 
Sbjct: 122 MIGAIALNSGLSVGIG----GNLGTPALDLLNEKSYQLYIIELSSFQL----ETTFNLKT 173

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             + I  +   H+  +                  K   I                    +
Sbjct: 174 IASSILNVTHDHMDRYPLGINQYRLIKLKIYKNAKVKIIN-----------LDDYMTWPV 222

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S     ++       K+  + +WM V  +           G+H   N L++L    
Sbjct: 223 HKNKSVCIGFSSHKGKYCIKKHKKNNWMVVNNKFLLKCSEMKISGFHNYLNALVSLIFSD 282

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           IL    + ++  L  F     R    +    +   + I++S + N +S  AA+S +    
Sbjct: 283 ILKIPREISLNTLKNFSGLPHRF---QIIHKKNNISWINDSKSTNVSSTIAALSSI---- 335

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G    +LG     G+  ++  + L +++    I  ++  G     L      S   
Sbjct: 336 -KIKGNIHLLLG-----GDSKKANLLPLMKIIRNKKI-KLYCFGKDAYLLSKI---STDS 385

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
             ++T+    + I+ +L  GD+V++    SS             F +L   +
Sbjct: 386 FINDTLYHSMIKIKENLNHGDIVLLSPACSSLDQFKNFKERGEKFTKLAQKI 437


>gi|172057971|ref|YP_001814431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sibiricum 255-15]
 gi|226711910|sp|B1YIT8|MURD_EXIS2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171990492|gb|ACB61414.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Exiguobacterium
           sibiricum 255-15]
          Length = 449

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 107/349 (30%), Gaps = 38/349 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
              +KA  +AITGS GKTTT  ++   L    K          +IG P        +  D
Sbjct: 105 YRSTKADWVAITGSNGKTTTTTLVHELLKRGSKRVH----LAGNIGFPAVEVAQQAEAGD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L  I        P  A    ++PAHL     +   A+AKA IF  +++ G
Sbjct: 161 VIVIELSSFQLMGIESFC----PVSAAFLNLSPAHLDYHGDVTSYAAAKARIFSNMDEAG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + +N DD     L             +    +    + +      E   + V       
Sbjct: 217 RLVVNADDEEVMRLSE-----------TAAAERLTFSRRQDAYAHIENDMIFVGQTEILP 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H  +N+L  L ++      +      L  F     R              +
Sbjct: 266 VRELALGGGHNLENVLAALTLIEPFGISLTAIQDVLRTFGGVAHRT---EYIGEFAGRKV 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  + +AA+S          G          E G         +       ++
Sbjct: 323 YNDSKATNNVATEAALSGFQSPIIWICGG--------LERGADLTPLKSAM------THV 368

Query: 402 SHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            HV   G       D    + I    +  M+            GD++++
Sbjct: 369 KHVIGLGETGQRFADLATEQQIASTVTREMEEAVATAFDVSKPGDIILL 417


>gi|303250495|ref|ZP_07336692.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|307251537|ref|ZP_07533444.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256037|ref|ZP_07537825.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650483|gb|EFL80642.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306861001|gb|EFM93007.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865459|gb|EFM97354.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 436

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 108/348 (31%), Gaps = 40/348 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA IIAITG+ GK+T   ++T                  +IGVP+    +  + +
Sbjct: 100 FVREAKAPIIAITGANGKSTVTTLVTEMAKQAGIKVGMG----GNIGVPVLSL-LNDEYE 154

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  I+  H+  +                  +  
Sbjct: 155 LFVLELSSFQL----ETTSSLNAVAATILNISEDHMDRY--------------NNSLEEY 196

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +         E +           + +    K   F     +       +         
Sbjct: 197 RLAKLRIYDNAENVIVNGEDRLTYPLETQAVKKLIRFAEYNAEYTMRNGILYSGDDAIIP 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +        +  +KAL V+   + R    +          
Sbjct: 257 TKEMLISGRHNEMNALAAMALAEAAGIPREGIVKALQVYGGLDHRF---QAVKTNDGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S  AA++ L        G    +LG     G+   +   +L  +++  NI
Sbjct: 314 VNDSKATNVGSTVAALNGLQV-----AGTLYLLLG-----GDGKAADFSELKPLINKPNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  G     L     +S+     ETM      I+  L  GD+V++
Sbjct: 364 -VCYCFGQDGAQLAALSSQSV---LVETMQQAIEQIRPQLKKGDMVLL 407


>gi|163750924|ref|ZP_02158157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
 gi|161329348|gb|EDQ00345.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella benthica KT99]
          Length = 478

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 114/385 (29%), Gaps = 24/385 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++AI+G+ GKT+T  ML      ++      G     +     ++ 
Sbjct: 97  QFLAEHILK--DRWVLAISGTHGKTSTSSMLA---WILEDCGYEPGFLIGGVPQNFGVSA 151

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 F + E     S   + R      +P   VI  +   H   F  ++ I      +
Sbjct: 152 RLGGSAFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFHHV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA----------DFQLRKW 263
              +   G I    D    + +         +T      S +           D Q    
Sbjct: 212 IRTVPGEGKIIWPKDSEAVQQVIDMGCWSEQETYARHSDSDSGIVSGKGSSAADNQGTWS 271

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
            +       + +L                  N+      ++           A+      
Sbjct: 272 SKLIAADGHQFELFLDGESQGILDWSLIGQHNVENATMAIAAARHVGVKPESAIQALTQF 331

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E   +R           + D+  +   A      + L          +I ++ +      
Sbjct: 332 EPPKRRMELIGEVNGIEVYDDFAHHPTA----IATTLQGCRAKVGEAKITIILEPRSNTM 387

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLV 442
            S      LA  +SL + ++++ +      ++ A+ ++   V     +D +   + S   
Sbjct: 388 KSGVHKDTLAGSMSLADQAYLYQADSIDWDIEAAMAKAELPVSVLYDIDEIVDAVASKAK 447

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEE 467
            GD +++  SN  GF  L   LLE+
Sbjct: 448 SGDTIII-MSNG-GFGGLHKKLLEK 470


>gi|154483291|ref|ZP_02025739.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
 gi|149735801|gb|EDM51687.1| hypothetical protein EUBVEN_00992 [Eubacterium ventriosum ATCC
           27560]
          Length = 460

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/410 (14%), Positives = 125/410 (30%), Gaps = 47/410 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V  +   + +   ++IP+          L ++          T I ++G+ GKTTT  
Sbjct: 77  AAVKADNPELVAATEMNIPLL----TRAEFLGQIMKNYH-----TAIGVSGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           ML+  +                I   +         D  I E       E         P
Sbjct: 128 MLSQIMLEANTD---PTILVGGIMPAINGNTRIGHSDNMITEAC-----EYTNSFLSFAP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  +A  HL  F  +++I  +     E + + G + +N D    +          +
Sbjct: 180 TIGIILNVAADHLDFFKDLDDIRHSFRRYAELIPEGGALVINSDIDNLDYFTE-GLKCNV 238

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T+ S  +          + + +  S+  V        +V    G H   N L ++    
Sbjct: 239 ITVGSDPEKSMYSAANITYDEFARGSYDLVVNGETKTHIVLKVTGEHNIYNSLASIAAAH 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  D ++ I  L  +   + R +      +      + + Y  +P  ++A I       
Sbjct: 299 FMGIDDNSIIAGLQQYGGTDRRFQYKGKLGD----ITVIDDYAHHPDEIRATIKTAKHYP 354

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLA 413
                    V          +++   +  + LS      V L+           G     
Sbjct: 355 HKK---MWVVFQPHTY--TRTKALLPEFCKALSEA--DAVVLADIYAAREKDTLGISSKD 407

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           +   + +     +Y  +   +  F+  +   GD +++      G   ++ 
Sbjct: 408 VMKGIKKLGTEAYYFPSFSEIENFLLENCSTGD-LLIT----MGAGDVVK 452


>gi|149184156|ref|ZP_01862479.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
 gi|148848134|gb|EDL62461.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus sp. SG-1]
          Length = 299

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 79/282 (28%), Gaps = 23/282 (8%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               IAV T I   HL     +EE   A +      G             +  +      
Sbjct: 1   CDFDIAVFTNITQDHLDYHRTMEEYRSAKSLLFSQLGNSYDEKKLKYAIINNDDPSAGFF 60

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  + ++G S++ADF     +     S   +    + +++     G     N+L  
Sbjct: 61  IHSTAAHVVTYGVSQDADFYAEDIELRHNGSSFTMVTPSERIKMDIQLAGRFNIYNVLAA 120

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
               +I    +     AL   +   GR ++     +         + ++         +V
Sbjct: 121 AASANISGVPLKNIKAALQSINGVSGRFEQVEAGQDFSVIVDYAHTPDS-------LENV 173

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------ 413
           L  I    +   I V+G     G         +   ++      V  +  +         
Sbjct: 174 LKTIETITDENVIVVVG----CGGNRDRTKRPIMAEIACKYGDQVVFTSDNPRNEDPNAI 229

Query: 414 LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           + D      H +Y              S    GDVV++  K 
Sbjct: 230 IADMTTGLKHTNYIVIIDRQEAINHAVSLAGKGDVVLIAGKG 271


>gi|323527429|ref|YP_004229582.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384431|gb|ADX56522.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia sp. CCGE1001]
          Length = 467

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 83/416 (19%), Positives = 143/416 (34%), Gaps = 49/416 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +   GA  VVV+T + +    +       IP+         +  LA   RL+   
Sbjct: 55  IGHAAENIEGANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E  
Sbjct: 108 --IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P I VIT I   H+  +             F        I +   
Sbjct: 163 ES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCV 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHG 287
           D        +      K I  +G + +A  +    +    +       +  +  ++  + 
Sbjct: 218 DDPN---VKEILPFVSKPIIRYGFAPDAQVRAVNVQARDGKMHFTAMREDAAPLDITLNL 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-----LNQGFFTLI 342
            G H  QN L  + I + L        +AL+ F+    R +RY                +
Sbjct: 275 PGEHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVPVIADGQAAGTYTL 334

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-- 400
            + Y  +P  M A ++      P        VL         ++    D  +VLS  +  
Sbjct: 335 VDDYGHHPVEMAATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDAL 390

Query: 401 -ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            ++ V+ +G          AL  AL  +  V   + +T+D +   + + + DGDVV
Sbjct: 391 VLTEVYSAGEAPIVAADGRALARALRVAGKVEPVFVDTVDEVPGALAAVVRDGDVV 446


>gi|304317204|ref|YP_003852349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778706|gb|ADL69265.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 454

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 131/391 (33%), Gaps = 38/391 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +V+V+  +   I S  +    V  +   + ++  A RL SKA I AITG+ GKTTT 
Sbjct: 68  GAQMVIVSPGI--PIDSEIVTKAKVKGI-EVIGEVEFAYRL-SKAPIYAITGTNGKTTTT 123

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLV 182
            +L     +             +IG PL  A +    D   + E+    L          
Sbjct: 124 SLLGEIFKNSGVR----TYVAGNIGYPLVEAAVKAGNDDVIVAEISSFQL----ETIKEF 175

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           RP I+ I  I P HL+    +E   + K  IFE         LNYDD     L  ++   
Sbjct: 176 RPVISAIINITPDHLNRHKTLENYINIKGRIFENQSFNEYTVLNYDDKNISSLFDRAKCK 235

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                      +    +  K    S       +          +  G H  +N ++   +
Sbjct: 236 VFPFSMEKILYRGTYVENGKIVISSNG-----EKNTIIDINDIYIPGNHNVENAMVASTM 290

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +   DV+     L  F   E R +  R           ++S   NP +   AI  +  
Sbjct: 291 AFLAGIDVNIINTTLKTFKGVEHRIEFVRSINGVK---YYNDSKGTNPDAAIKAIEAM-- 345

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +G  I + G     G        +     +   +  + L G     +  +  ++ 
Sbjct: 346 -----KGPIILIAG-----GYDKGVSFDEFTSSFNGR-VRKLILLGETRDLIYKSAVKNG 394

Query: 423 ----HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                +    ++D          + GD V++
Sbjct: 395 FSREDITVVNSLDDAVYAAYKMSMPGDNVLL 425


>gi|288574852|ref|ZP_06393209.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570593|gb|EFC92150.1| UDP-N-acetylmuramate/alanine ligase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 482

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 112/352 (31%), Gaps = 31/352 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  M+ + LS                   +            + EL  S
Sbjct: 116 IGVAGTHGKTTTSSMIGLILSGAGLEPTVAIGGELCD---IGCNARLGSGPHMVAELDES 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                        P I+VIT +   H++++   + + +      + L K G   L  +D 
Sbjct: 173 -----DGSFLCFHPTISVITNVDWDHVNHYPDFDSVLNTFESFSKNLRKGGLSVLCGEDG 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI 288
             + L       G K   ++G     D+     +       S+   +       +     
Sbjct: 228 GVQSLLKMMEKDGPKAKVTYGWGDRWDWGATDIEYNHGGGVSFSVRKHGRSIGRIELSVS 287

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L +  +   L+   D   + L  F   + R +             + + Y  
Sbjct: 288 GDHNVLNALASCIVADTLSVPFDVIKRTLRQFKGAKRRLQFKGGVE----HIDVYDDYGH 343

Query: 349 NPASMKAAISVLSQI----------SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
           +P  ++A +  +SQI           PH   R  A+  D  E+   +    +        
Sbjct: 344 HPKEVEATLKAISQIFPERKILVAFQPHRFTRTAAMAEDFAEVLTYADKVVVLPIYPADE 403

Query: 399 YNISHV--WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             I  V   + G H+      + +      ++        + S + +GDV++
Sbjct: 404 PPIDGVTSHMIGDHLS-----MKKHPSFFVADRKKDAIDKVMSLVEEGDVIL 450


>gi|160896915|ref|YP_001562497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
 gi|160362499|gb|ABX34112.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Delftia
           acidovorans SPH-1]
          Length = 650

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 102/377 (27%), Gaps = 39/377 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVP 150
           L AL+  A   R     T++ ITG+ GKTT   +    L       A  G+     +   
Sbjct: 255 LKALSA-AHGYR----PTVLGITGTNGKTTVTSLTGQLLEHAGLRVAVAGNIGPTLLDTL 309

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                        + EL    L        +  P  A +  I   HL     +   A AK
Sbjct: 310 TQAIDAETLPQAWVLELSSFQLD----GVQMFEPTAAAVLNITQDHLDWHGSLRAYADAK 365

Query: 211 AEIFEGLEKTGTIFL----NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A IF                       +   K      +   +FG            +  
Sbjct: 366 ACIFGSSGTMVLNREDPEVMRMLPAPVVPPGKRQKPQQRAHITFGGDMPRRPGDFGLEVV 425

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG- 325
           S  +W+    +        +    ++ + M      +      ++               
Sbjct: 426 SGMTWLVRAHEADETAKGKNAEDLYIQRLMPADALRIRGRHNAINALSALALASAGGCTL 485

Query: 326 ------------RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
                          R +           D+S   N  +  AA+S L       + R + 
Sbjct: 486 APLLYGLREYRGEPHRVQPIGRVNGVEYYDDSKGTNVGATVAALSGL-----GPDHRIVV 540

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDG 432
           +LG   +  + S              ++    L G     ++ AL    + +  + TM  
Sbjct: 541 ILGGDGKGQDFSP------LVAPVSRHVRTAVLIGRDAGRIRAALQDCGVPLVDATTMAD 594

Query: 433 LFLFIQSSLVDGDVVVV 449
                 S   +GD V++
Sbjct: 595 AVELAASRAHEGDAVLL 611


>gi|107021639|ref|YP_619966.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116688584|ref|YP_834207.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
 gi|123371911|sp|Q1BZG2|MURC_BURCA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166222962|sp|A0K487|MURC_BURCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|105891828|gb|ABF74993.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia AU
           1054]
 gi|116646673|gb|ABK07314.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           HI2424]
          Length = 465

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 156/432 (36%), Gaps = 40/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNMPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +     DAL R++         +  T+D +   +     +GDVV+   + S G 
Sbjct: 393 AAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGAGSIGG 452

Query: 458 --YRLINLLLEE 467
              +L+  + ++
Sbjct: 453 VPAKLVQHIQQK 464


>gi|212702358|ref|ZP_03310486.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
 gi|212674236|gb|EEB34719.1| hypothetical protein DESPIG_00371 [Desulfovibrio piger ATCC 29098]
          Length = 457

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 121/391 (30%), Gaps = 34/391 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   V      +I +         +  LA   RLR     +AI G+ GKTTT  +
Sbjct: 72  TAIAEDNPEVVEARRRNIAII----PRAEM--LAELMRLRQG---VAIAGTHGKTTTTSL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
                 +       I     ++              + I E   S           + P 
Sbjct: 123 TASIFDTAGLDPTVIIGGRLNV---YGTNAHLGSGHYLIAEADES-----DGSFLCLFPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I V+T +   HL ++   + I  A  +    +   G   +  DD     L  +     + 
Sbjct: 175 INVVTNVDEDHLDHYGTRQAIDDAFVQFMNKVPFYGLNVVCGDDPGVRALLPRVKRPVL- 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G + +   +    +      +   +   K  EV     G H   N L  +G  + 
Sbjct: 234 ---TYGFAADNQLRAVLLESGMTSRFEVWRDDQKLGEVTLPHPGRHNILNALAAIGAATA 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRY------RCALNQGFFTLIDESYNANPASMKAAISV 359
                +  ++ L+ F     R +            + G       +  A    +     +
Sbjct: 291 ADIPFERCVEGLATFRGVGRRFEFKGERNGVTVIDDYGHHPAEIAATLATARQVFPNRRL 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +    PH   R  A  G+ C++ ++     +      S   I      G    +L   + 
Sbjct: 351 VVAFQPHRFSRTQAHFGEFCKVFDVVDQLVLTEIYAASEKPI-----PGVSGESLAQGMR 405

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +     V Y +T+D +   +   L  GDV++
Sbjct: 406 QVSETPVTYFQTIDAMVKGLDDILKPGDVLL 436


>gi|261823018|ref|YP_003261124.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium wasabiae WPP163]
 gi|261607031|gb|ACX89517.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Pectobacterium
           wasabiae WPP163]
          Length = 438

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 126/375 (33%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALQL-LEQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  +   H + +     +   +A      E   
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHTNRY--PFGLQQYRAAKLRIYEHAD 207

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +N DD+    ++            SFG     D       +   ++W+ V  +    
Sbjct: 208 LCVVNADDALTMPIR-----GADVRCRSFG----VDVGDYHLNRQQGETWLRVNGERVLN 258

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +   +   + +A+ AL+ F     R    + A  +     
Sbjct: 259 TREIKLVGQHNYTNALAALALADAVKIPLASALTALTAFTGLPHRF---QMAFERDGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA+S L+      +G    +LG   +  + S      L        I
Sbjct: 316 INDSKATNVGSTEAALSGLTV-----DGTLHLLLGGDGKSADFSP-----LVPYFQGERI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     I   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDAAQLA-ALRPEI-AEQTETMEQAMRVIAERIKPGDMVLLSPACASLDQFRS 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDEFARLAKEL 437


>gi|300858813|ref|YP_003783796.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686267|gb|ADK29189.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302331073|gb|ADL21267.1| UDP-N-acetyl muramate--L-alanine ligase [Corynebacterium
           pseudotuberculosis 1002]
          Length = 485

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 73/397 (18%), Positives = 132/397 (33%), Gaps = 42/397 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +   L IPV    D+LG L +          +T + I G+ GKT+T  M  +A+
Sbjct: 87  DNPELVAARELGIPVIRRSDLLGELME---------GSTQVLIAGTHGKTSTTSMAVVAM 137

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +     +          +            D  + E   S    +R+     +P+IAVI
Sbjct: 138 QAAGMDPSFAIGGQ----LNKAGTNAHQGTGDAFVAEADESDASLLRY-----KPNIAVI 188

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY- 248
           T I P HL  F   E       +  + L    ++ +  DD    +L  K H         
Sbjct: 189 TNIEPDHLDFFKSEEAYFEVFEKFADRLVPGVSLVVCLDDPHTAMLGQKIHEKHKDIKVV 248

Query: 249 -------SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                  S      A   +  ++     +   + + G+  EVV    G HM  N    L 
Sbjct: 249 GYGTVAASAEYPDIAKTVVESFEITHSGTVATIVVGGQETEVVLRTPGRHMVLNAAAALT 308

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISV 359
              I   D+      +S F     R + +      +     L D+  +          + 
Sbjct: 309 AGVIAGGDLFKLAAGISDFSGVRRRFEYHGVVAEGDFAGIELYDDYAHHPTEVSAVLTAA 368

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFH 410
            +++   G+GR + +      +   + +F  + A  LSL + + V            G  
Sbjct: 369 RAKLQARGQGRLLVIFQP--HLYSRTINFVDEFAAALSLADEAIVLDIYGAREKPVEGVD 426

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + D +  +I  H+      +   +      GD+V
Sbjct: 427 SRIITDKM--TIPAHFEPDFSHVPEAVADLAAPGDLV 461


>gi|170731884|ref|YP_001763831.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia cenocepacia
           MC0-3]
 gi|229486474|sp|B1JV79|MURC_BURCC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169815126|gb|ACA89709.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           MC0-3]
          Length = 465

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 156/432 (36%), Gaps = 40/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNMPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +     DAL R++         +  T+D +   +     +GDVV+   + S G 
Sbjct: 393 AAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGAGSIGG 452

Query: 458 --YRLINLLLEE 467
              +L+  + ++
Sbjct: 453 VPAKLVQHIQQK 464


>gi|186477420|ref|YP_001858890.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia phymatum
           STM815]
 gi|229486477|sp|B2JHF9|MURC_BURP8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|184193879|gb|ACC71844.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia phymatum STM815]
          Length = 464

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 149/414 (35%), Gaps = 46/414 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GHD     ++ GA  VVV+T + +    +       IP+         +  LA   RL+ 
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHRRIPIV----PRAVM--LAELMRLKQ 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++   L++       +      +      AR+    DF + E
Sbjct: 107 G---IAIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P I VIT I   H+  +             F        I + 
Sbjct: 161 ADES-----DASFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVL 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVH 285
             D        +      K I  +G + +A  +    +    +     ++     +++V 
Sbjct: 216 CVDDPN---VKEILPFVSKPIIRYGFAPDAQVRAVNVEAREGKMHFTAMREDAPPIDIVL 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
           +  G H  QN L  + I + L        +AL+ F+    R +RY    +  G    + +
Sbjct: 273 NLPGLHNVQNALAAIAIATELEVKDADIQRALADFNGVGRRFQRYGEVTVTSGGAYTLVD 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A I+      P        VL         ++    D  +VLS  +   +
Sbjct: 333 DYGHHPVEMAATIAAARGAFPDK----RLVLAFQPHRFTRTRDCFEDFVKVLSTVDALVL 388

Query: 402 SHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
           + V+ +G   +   D   L R+I V       + +T+D +   + + + DGDVV
Sbjct: 389 TEVYSAGEAPIVAADGRSLTRAIRVAGKVEPVFVDTVDEVPDALGAIVRDGDVV 442


>gi|71277817|ref|YP_271115.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
 gi|81174947|sp|Q47VQ7|MURD_COLP3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71143557|gb|AAZ24030.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Colwellia
           psychrerythraea 34H]
          Length = 471

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 111/349 (31%), Gaps = 32/349 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIA-----LSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
           S   ++A+TGS GK+T   +L        +++           N      +  +++    
Sbjct: 118 SPMKMLAVTGSNGKSTVVSLLASLAKAIGVNAALAGNIGEPILNLLHRENVYNSQLANQP 177

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  I EL    L  +  +  +     A +  ++  HL     +    + K  I+   +  
Sbjct: 178 DIVIVELSSFQLETLSSMHAIA----ASVLNLSDDHLDRHKTLANYQAIKQSIYPQAKIA 233

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +   +     +            SFG +K  +      +    +  M    Q   
Sbjct: 234 VVSREDQASNTLVAAQEII---------SFGLNKP-EQDCFGLQAIDNKMVMMFGEQALI 283

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H A N +  L +       +    + L+ F     R    +   ++ +  
Sbjct: 284 SIDELPLAGMHNALNYMAALALGYSAGWSLSAMTENLAGFMGLAHRC---QRVASEDYIQ 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  +    ++ ++ + P   G+   +L      G   +         +   +
Sbjct: 341 WINDSKATNVGAT---LAAITGLVPTLTGQNKLILIA----GGDGKGADFSALTTILNCD 393

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ +   G     +   +  +I V   +T+       +     GD+V++
Sbjct: 394 VNQLITLGKDGAEIASLVSDAIQV---DTLREAVEQAKQIAKPGDMVLL 439


>gi|331001071|ref|ZP_08324702.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569376|gb|EGG51154.1| UDP-N-acetylmuramate--L-alanine ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 462

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 80/465 (17%), Positives = 147/465 (31%), Gaps = 59/465 (12%)

Query: 7   FHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++L  +  H  G        V  +    RSI   E F         GHD   +    G
Sbjct: 21  IAEVLINLGYHVSGSDLKENAAVEHL----RSIGA-EIFI--------GHD-ASNVGDAG 66

Query: 65  AG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                  V  +   V    + +IPV         +  LA   RLR     IA+ G+ GKT
Sbjct: 67  VVVTSTAVHADNPEVVEAKNRNIPVV----PRAIM--LAELMRLRQG---IAVAGTHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++T  L         +     +           +   + + E   S          
Sbjct: 118 TTTSLITSILERGGLDPTFVIGGRLNAAGSNAKLGQGL---YIVAEADES-----DASFL 169

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P I+V+T I   H+  +   +  +  A  +  + L   G   +  +      +  K 
Sbjct: 170 NLSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAVMCIESENVRAILPKI 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   +       A+       Q     +  V+      E+  +  G H   N L  
Sbjct: 230 TKPILTYGFREDAQIRAENIRADGTQMH---FTLVRDGAAPEEITVNLPGVHNVLNSLAA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM----- 353
           +G+   L   ++   +AL+ F     R   +      +G   L+ + Y  +P  M     
Sbjct: 287 IGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVDDYGHHPTEMAATIA 346

Query: 354 -----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +L    PH   R      D+  +   + +  ++         I      G
Sbjct: 347 AARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSNADALVLEAVYPAGEEKI-----FG 401

Query: 409 FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
               +L  ++  +  V   ++   D +   I +++ +GDVV+V  
Sbjct: 402 ADSRSLCRSIRLTGKVEPLFAGNTDEVMELINNNVKEGDVVLVMG 446


>gi|118581688|ref|YP_902938.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
 gi|166224713|sp|A1AU60|MURC_PELPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118504398|gb|ABL00881.1| UDP-N-acetylmuramate--L-alanine ligase [Pelobacter propionicus DSM
           2379]
          Length = 460

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 126/398 (31%), Gaps = 43/398 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V+ +     +   +      V  +  A   LA   R++     IAI G+ GKTTT  M
Sbjct: 67  VVVISSAVHDDNPEVVEAKRLHVPVIPRA-EMLAELMRMKFG---IAIAGTHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L         +     +         +  +   G  +  ++   E      ++ P 
Sbjct: 123 AASILGHAGIDPTIVIGGKLN--------AIGTNAQLGQGKFLLAEADESDGSFLVLSPT 174

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           IAV+T I   HL ++  GIEEI     +    +   G   L  DD     +  +      
Sbjct: 175 IAVVTNIDADHLDHYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVKK--- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++G S  AD +    +      S+       +  E+     G H   N +  + + 
Sbjct: 232 -RYMTYGLSSQADIRATHVRHDGFTTSFTAHFKGYRLGEISFTMPGAHNVLNAMACIAVA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L        +  S F     R         +     + + Y  +PA +KA ++     
Sbjct: 291 LELDVPFSAIQEGFSRFGGVGRRFT----IKGEPRGITVVDDYGHHPAEIKATLAAARL- 345

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS-----------GFHV 411
               E R +AV              H    E + + Y+   + L+           G   
Sbjct: 346 -GWPERRIVAVF-----QPHRYTRTHELFGEFVTAFYDADVLILTDVYAAGEQPVEGATA 399

Query: 412 LALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVV 447
             L   + R     V +    + +   +   + +GD+V
Sbjct: 400 ERLSQEILRHGQKDVTWIPNRELIPQHLLGIVKEGDMV 437


>gi|260427001|ref|ZP_05780980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
 gi|260421493|gb|EEX14744.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citreicella sp.
           SE45]
          Length = 467

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 102/344 (29%), Gaps = 26/344 (7%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++A+TGS GK+TT  ++   L+S  +          +IG  +     P D    + E
Sbjct: 119 PPRVVAVTGSNGKSTTSALIHHILTSSGRD----SQLAGNIGRGVLDIDPPGDGGVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L        R LT    P +AV T ++P HL    G+    +AK  +F        +   
Sbjct: 175 LSSYQTDLARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFSEGGPDRCVIGV 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +     L    S       +                           + +  +   +  
Sbjct: 231 DEAEGRYLANQMSEGAADDRVIRVSSGTRLSGPGWDVFARKGFLTEWRKGRQVASIDLRQ 290

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N        +   A         + F   EG   R +     G    +++S 
Sbjct: 291 VRGLPGAHNHQNACAAYAAARALGVAPRVVEAAFMSFEGLPHRSQIVAEAGGVAYVNDSK 350

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHVW 405
             N  +   A+    ++     G        M E G         L  +   + N+   +
Sbjct: 351 ATNVDAALKALQAFPKVRWICGGL-------MKEGG---------LGGLAPGFPNVVKAY 394

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G         LP  +       M+       +    G+VV++
Sbjct: 395 VIGREAAGFALGLP-GVEAEVCTDMETAVTRAIAEAQPGEVVLL 437


>gi|188587819|ref|YP_001919625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|226711898|sp|B2UXV7|MURD_CLOBA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|188498100|gb|ACD51236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 458

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 112/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                KA I  ITGS GKTTT  +++  L               +IG P           
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKILQEEGYKTWVG----GNIGTPLFAQIEEIKAE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T  +   IAV T +AP HL     ++E   AK  IF     T
Sbjct: 167 DRVVLELSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQGST 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ +N ++      +A+  A G    +S  +        +          +  +     
Sbjct: 222 NTLVVNRENEITYGFEAE--AKGEVREFSSKREVKEGAYYKDGILYLSGKEVCKKDNIVI 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   I +     ++   K    F+  E R              
Sbjct: 280 K--------GMHNVENYLAAFIATKDDVSIENMKKVAESFNGVEHRC---ELVREINGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +      G                   H+    + +   
Sbjct: 329 YYNDSIASSPNRTLAGLKAFDKKVILIAGGY---------------DKHLLFEPLANEGY 373

Query: 401 --ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +KD            I++    T++      Q     GD++ +  
Sbjct: 374 PYIKELILLGQTKEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQDLAKQGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMFPNFMIRGNKFKEIVNEL 458


>gi|16126795|ref|NP_421359.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus CB15]
 gi|221235575|ref|YP_002518012.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           crescentus NA1000]
 gi|30316113|sp|Q9A597|MURD_CAUCR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766042|sp|B8H096|MURD_CAUCN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|13424123|gb|AAK24527.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus CB15]
 gi|220964748|gb|ACL96104.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter
           crescentus NA1000]
          Length = 471

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 131/408 (32%), Gaps = 51/408 (12%)

Query: 84  PVFGVDDVLGA----LNKLAVAAR------LRSKATIIAITGSVGKTTTKEMLTIALSSI 133
           P + V+    A    L  + + AR         +  IIAITG+ GK+TT  ++    +S 
Sbjct: 82  PHWTVEKARAAGVEVLGDVELFARTVNAAPAHKRPKIIAITGTNGKSTTTALIGHLCASA 141

Query: 134 KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIA 193
            +          +IG+ +            + EL    L         ++P   V+  I+
Sbjct: 142 GRD----TRVGGNIGLGVLGLEDMHGGAVYVLELSSYQLDLTS----SLKPDAVVLLNIS 193

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
           P HL    G++   +AK  IF    K  T  +  DD++ + +  +  A   +TI+     
Sbjct: 194 PDHLDRHGGMDGYIAAKRRIFLNQGKGDTAIIGVDDAWCQQICTEITAANRRTIWPISAG 253

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
           K     +   +     +  E  ++   +       G H  QN          +   +  A
Sbjct: 254 KAMGRGVYALQGVLYDATGERVVEVADILRARSLPGRHNWQNAAAAYAAARAIGISMQDA 313

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +  L  F     R          G    +++S   N  + + A+S   +      G   A
Sbjct: 314 VDGLMTFPGLAHRM---ETVGKIGKVRFVNDSKATNADAARQAMSSYPKFYWIAGGVAKA 370

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
             G + ++         DL   ++       +L G         L        S T++  
Sbjct: 371 --GGIDDL--------KDLFPRIAKA-----YLIGEAAEPFSWTLAGKAECVLSGTLEKA 415

Query: 434 FLFIQSSLV---DGDVVVV---KSS---------NSCGFYRLINLLLE 466
                +      +  +V++    +S             F   +N L  
Sbjct: 416 VQQAYADAAASGEEAIVLLSPACASFDQFSDFEARGEAFRAAVNGLTA 463


>gi|156935389|ref|YP_001439305.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166224688|sp|A7MIF0|MURC_ENTS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|156533643|gb|ABU78469.1| hypothetical protein ESA_03247 [Cronobacter sakazakii ATCC BAA-894]
          Length = 488

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 129/399 (32%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                  +  + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  V+     + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVENYRQTGAQGHFTLVRQDKPELHVTLNAPGRHNALNAAAAVSVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + D  ++AL  F     R              +    ++ + Y  +P  + A +      
Sbjct: 310 EDDAILRALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          +L
Sbjct: 370 WPEKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V          +   +   L   D+++V+ 
Sbjct: 426 CRTIRARGKVDPILVSDPAQVAAMLAPVLSGNDLILVQG 464


>gi|317154475|ref|YP_004122523.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944726|gb|ADU63777.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 480

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 118/386 (30%), Gaps = 42/386 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IP+         +  LA   RLR+    +AI G+ GKTTT  +L    + 
Sbjct: 97  PELVAARGRGIPII----PRAEM--LAELMRLRTG---VAIAGTHGKTTTTSLLATIFTE 147

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I     +              D+ I E   S          L+ P I+V+T +
Sbjct: 148 AGLDPTVIIGGKLNT---YGANARLGGGDYLIAEADES-----DGSFLLLSPIISVVTNV 199

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  ++  + I  A       +   G   +  DD   + L        +    ++G 
Sbjct: 200 DKDHMDFYADQDAIDDAFTRFMNSIPFYGMNVVCGDDEGVQRLLPTIKRPCL----TYGL 255

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                 +           +          EV     G H  QN L  +G+      D + 
Sbjct: 256 GPKNRLRGEIITSHLRSLFRVFLDGQPWGEVTVAQPGIHNVQNALACIGVALEAGLDKED 315

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP----------ASMKAAISVLSQ 362
            +  L+ F     R +       +    L+ + Y  +P           +      ++  
Sbjct: 316 IVNGLANFGGVGRRFE----RKGERKGVLVVDDYGHHPAEIIANLRTARACYPDRRLVVA 371

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-- 420
             PH   R  A+ G+ C+    +    +      S   I      G   L+L   + +  
Sbjct: 372 FQPHRFTRTQALFGEFCKAFTDADLLLLTEIYPASESPI-----PGVSGLSLAQGIKQVS 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV 446
              V +    + L   +  +L  GD+
Sbjct: 427 DTKVQFFPDFESLEARLADTLRPGDL 452


>gi|242238101|ref|YP_002986282.1| UDP-N-acetylmuramate--L-alanine ligase [Dickeya dadantii Ech703]
 gi|242130158|gb|ACS84460.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech703]
          Length = 486

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 72/414 (17%), Positives = 138/414 (33%), Gaps = 45/414 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  ++T   
Sbjct: 91  DNPEILAAHDARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAIVTSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDPVIRELLPRV----GRHITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +   +     + V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 EDDAILRALERFQGTGRRFDFLGEFPLEPVNGKSGAVMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          +L
Sbjct: 370 WPDK----RLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAGEAPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
              +     +       ++ L   +  +L +GD+V+ + + S G  +L   L E
Sbjct: 426 CRTIRGRGKIDPIMVPDVENLPELLAQALQNGDLVLAQGAGSVG--KLARRLAE 477


>gi|56964122|ref|YP_175853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bacillus
           clausii KSM-K16]
 gi|60390298|sp|Q5WFG8|MURD_BACSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56910365|dbj|BAD64892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus clausii
           KSM-K16]
          Length = 451

 Score = 54.1 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 109/345 (31%), Gaps = 34/345 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A ++AITGS GKTTT  ++   L    +         N   V   +A+        + 
Sbjct: 109 SEAEMVAITGSNGKTTTTTLVKEMLEHSGRK---PLIAGNIGTVASEVAQKAKAEHVIVL 165

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L      T+  +P +AV   I  AHL      E+  +AKA I   +     +  
Sbjct: 166 EVSSFQLM----GTNAFQPKVAVWLNIFDAHLDYHGTREDYIAAKARIAANMGPADYLVY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD       A+  A  +          +    +       + +         +     
Sbjct: 222 NADDPTVVQAIARIGATLVP--------FSRINVVEDGAYVKDGTIFFKDEPILA----L 269

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                  A N+   L   +       T  +   V     G   R +   +       ++S
Sbjct: 270 ADAVLPGAHNVENMLAATAAARLAGATVEQIRHVLSHFPGVKHRLQYVGSWEGRQFYNDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  + KAA+S  ++         + ++    + G            + SL  +  V 
Sbjct: 330 KATNILATKAALSGFAK--------PVVLIAGGLDRGNDFDEL------LASLKYVKAVV 375

Query: 406 LSGFH-VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G      L  A   ++    +E +        +    GDVV++
Sbjct: 376 AYGETKSKLLALAAKANVQAVTAERVQDATEKAVALSQPGDVVLL 420


>gi|260596516|ref|YP_003209087.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
 gi|260215693|emb|CBA28032.1| UDP-N-acetylmuramate--L-alanine ligase [Cronobacter turicensis
           z3032]
          Length = 488

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 129/399 (32%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                  +  + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGTHARLGNSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  V+     + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVENYRQTGAQGHFTLVRQDKPELRVTLNAPGRHNALNAAAAVSVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + +  ++AL  F     R              +    ++ + Y  +P  + A +      
Sbjct: 310 EDEAILRALESFQGTGRRFDFLGEFPLANVNGKSGTAMLVDDYGHHPTEVDATVRAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          +L
Sbjct: 370 WPEKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V          +   +   L   D+++V+ 
Sbjct: 426 CRTIRARGKVDPILVSDPAQVAAMLAPVLSGNDLILVQG 464


>gi|326202446|ref|ZP_08192315.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
 gi|325987564|gb|EGD48391.1| UDP-N-acetylmuramate/alanine ligase [Clostridium papyrosolvens DSM
           2782]
          Length = 467

 Score = 54.1 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/384 (17%), Positives = 106/384 (27%), Gaps = 28/384 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     L IPV    D    L  L            IA+ G+ GKTTT  M+T  +
Sbjct: 85  DNPEMIQSKELGIPVI---DRAELLGLLMKKH--SFG---IAVAGTHGKTTTTSMITTIM 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                                    +  +   G  E  ++   E         P +AV+ 
Sbjct: 137 LEANTDPTAHIGGELDC--------IGGNTRIGGSEYFITEACEYYGSFLKFHPFMAVVL 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  F  +E I S   E    + + G I    DD     + +K     I T    
Sbjct: 189 NIEVDHVDYFRDLEHIKSTFGEFVALVPRNGYIVACADDENTLSVVSKRDC-NIITYGLK 247

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K      +   +      S+   +   K  +V     G H   N L  +         +
Sbjct: 248 NKDAMWTAKEITYNSMGCASFEVYKEGTKMGDVSLSVPGPHNVSNSLAAIAAAHTCGCSM 307

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVLSQISP 365
           D     LS F     R +      N                  N A       +     P
Sbjct: 308 DNIAYGLSRFGGSHKRFELKGLVDNIKVIDDYAHHPSEVQATLNAAKSSDHNKIWCVFQP 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHV 424
           H   R  A L    E    + +  I         +   +     H   L D +     + 
Sbjct: 368 HTYTRTRAFLDKFSESFGEADNIVITDIYAAREKDPGDI-----HSKILADRIRENGGNA 422

Query: 425 HYSETMDGLFLFIQSSLVDGDVVV 448
            Y      +  ++  +   GD+++
Sbjct: 423 VYISDFQDIAEYLDKNAQSGDLIL 446


>gi|317124646|ref|YP_004098758.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
 gi|315588734|gb|ADU48031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Intrasporangium
           calvum DSM 43043]
          Length = 496

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/390 (15%), Positives = 113/390 (28%), Gaps = 47/390 (12%)

Query: 97  KLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R    A   + +TG+ GKTTT  ML   L +         +   ++G P+  A 
Sbjct: 118 ELAWRMRPLEGAAPWLTVTGTNGKTTTVNMLASILRASGLR----ATSAGNVGTPILEAV 173

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +  +  D    EL    L   R ++       + +  +AP HL       E   AK +I+
Sbjct: 174 LHPEPYDVLAVELSSFQLHWQRSISA----VASAVLNVAPDHLDWHGSYAEYLRAKGKIY 229

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +         +    +   +++A+         ++ G    +   +            + 
Sbjct: 230 DNTHLACVYNVADIQTEQLVMEAEVVEGCRAVGFTTGIPAPSMIGVVDDVLADRAFVEQR 289

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q     +  +    G   +         ++         +  L+V               
Sbjct: 290 QRSAAELCTLDDLRGDAPSVAPHYLANALAAAALARAYGVGPLAVRDGLRAFRPDRHRIA 349

Query: 335 NQGFFT---LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +++S   N  +  AA++    +     G            G    S   +
Sbjct: 350 EVATVRGVRWVNDSKATNTHAAAAALTSFDSVVWIAGGLLK---------GADVDSLVEE 400

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSET-----MDGLFLFIQSSLVD 443
           +A  L       V L G     + +AL R    + V          MD +          
Sbjct: 401 VASRLR-----GVVLIGADRARIAEALARHAPDVPVIDLPDTDTGVMDLVVTHAARLAHP 455

Query: 444 GDVVVVK------------SSNSCGFYRLI 461
           GDVV++              +    F   +
Sbjct: 456 GDVVLLAPAAASMDMFTNYGARGDAFEDAV 485


>gi|258546150|ref|ZP_05706384.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
 gi|258518575|gb|EEV87434.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Cardiobacterium
           hominis ATCC 15826]
          Length = 436

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 125/394 (31%), Gaps = 48/394 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A   GAG +VV+  +     + +       + +    +L       +   ++A+TGS 
Sbjct: 60  PQAFA-GAGTLVVSPGVDRRRAAFTHSYAQQINDIELFARL-------NDKPVLAVTGSN 111

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIR 176
           GK+T   +L  AL+              +IG P+  A    +  D  + EL    L    
Sbjct: 112 GKSTVVTLLAQALNHAGH----KAKLCGNIGRPVLDALFDGEAADCYVIELSSYQL---- 163

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P +A +  + P HL  +   ++ A+  A     + ++    LN DD     + 
Sbjct: 164 ELCPSLYPRVAAVLNVTPDHLDRY---DDFAAYAAAKANLVRQSSICILNGDDEACVAMA 220

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                         G++              E   + +              G H   N+
Sbjct: 221 ED------------GQNIIYYGTSATLPNRVEGGKIWLHGHALLETARLRLGGAHNHANI 268

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L TL ++          + AL  F     R    +    +      D+S   N       
Sbjct: 269 LCTLLMLEAYGVAPQQVLSALETFAGLPHRM---QLVSEENGVRWYDDSKATNIG----- 320

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
               +      +G  + + G + +  + S      LA  L   N+  V L G     +  
Sbjct: 321 --AAAAALAGIDGAVVLIAGGVGKNQDFSL-----LARELQQANLRGVLLIGVDNRDMAA 373

Query: 417 ALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
           A   +        TMD      ++    GD V++
Sbjct: 374 AFTAAGIAFEDCGTMDKAVARARALAQAGDSVLL 407


>gi|312143939|ref|YP_003995385.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904590|gb|ADQ15031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 454

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 131/359 (36%), Gaps = 30/359 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             ++++  A R+  +A IIA+TG+ GKTTT ++L   L+ +            +IG+P  
Sbjct: 95  ETISEIEFAYRMN-EADIIAVTGTNGKTTTTDLLAKMLNKLNGRKV---QAAGNIGIPFI 150

Query: 153 LA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + EL    L           P IA+    +P HL      E   +AK 
Sbjct: 151 SIVEQMGKDDLVVLELSSFQL----EAVKNFHPKIALYLNYSPDHLDRHKSEENYKNAKK 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +IF    ++    ++ DD +   +K +  A  + TI +F K  +   +  K         
Sbjct: 207 KIFSQQNRSDYALIDLDDKYLAEIKNQIKAE-LFTISAFNKKADVIIENNKAILQKNG-- 263

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            E + Q        +    H  +N+        +    ++    A   +     +  R  
Sbjct: 264 -EDKKQELIDFDKLNFSALHNKKNITFAALAAYLSGQKLEKIKHAAQKYEL---KSHRME 319

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              N   + +ID+S   NP++   A+  L +      G            G+   +    
Sbjct: 320 KIDNDRGYLIIDDSKATNPSAALNAVKSLDRDIILIAG------------GQDRGADFSQ 367

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           LAE +    +S + L G     L  A+   ++ +  +E M+         L + + +++
Sbjct: 368 LAEEIKKR-VSTLILIGETSDKLAAAVGESNLEIFKAENMEKAAEIAAEKLSENNCLLL 425


>gi|310816183|ref|YP_003964147.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
 gi|308754918|gb|ADO42847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ketogulonicigenium
           vulgare Y25]
          Length = 466

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 62/396 (15%), Positives = 110/396 (27%), Gaps = 43/396 (10%)

Query: 69  VVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           +V +  +A +     PV            +D+       A            ++ +TGS 
Sbjct: 70  LVTSPGIAHLYPKPHPVIAAAWAAFVPVDNDIGLFFRSYADREWDDFDIRPRVVTVTGSN 129

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  +L   L               +IG  +       D +  + EL        R 
Sbjct: 130 GKSTTSALLHHILEE----CGRPAQLAGNIGRGVLDLPPARDGEVVVLELSSYQTDLARA 185

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           LT    P IAV+T ++P HL   +G+    +AK  +F        +    ++     L  
Sbjct: 186 LT----PDIAVLTNMSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGVDENE-GRYLAN 240

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG----IGYHMA 293
           +           F  S              +    E +   +   +         G H  
Sbjct: 241 QLIEGPGDDRVIFTSSGQKLESAAWSVFARKGFLTEWRKGRQIASIDLRQVVGLPGAHNH 300

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QN      +   L         AL  +     R    +    +     +++S   N  S 
Sbjct: 301 QNACNAYAVARSLGLGPKAIEAALHSYPGLPHRS---QRIGEKDGVIFVNDSKATNVDSA 357

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+     I     G            G      H+         ++   ++ G     
Sbjct: 358 AKALQAFQNIRWICGGLEKE-------GGLGGLLPHV--------GSVKKAYVIGRDAPH 402

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               L   +      TM        +    GD+V++
Sbjct: 403 FALQL-TGVEAEICTTMGQAVAQAFADAEPGDIVLL 437


>gi|261345646|ref|ZP_05973290.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
 gi|282566128|gb|EFB71663.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Providencia
           rustigianii DSM 4541]
          Length = 441

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/376 (17%), Positives = 125/376 (33%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                 A I+AITGS GK+T   ++     +   +         +IG+P     +     
Sbjct: 104 FCREVDAPIVAITGSNGKSTVTSLVGEMAKAAGISV----GVGGNIGIPALSL-LNQGHS 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A +  I+  H+  +  G+E+  +AK  I++  +  
Sbjct: 159 LYVLELSSFQL----ETTSSLQAAAATVLNISEDHMDRYPLGLEQYRAAKLRIYDNAQHC 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                       + +        +    SFG +    +   + +    +    +      
Sbjct: 215 IVNA--------QDVLTLPTDHRLNQCTSFGLNNGDYYFDTQKRVLIAKGETVLDASEMH 266

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   H+ +    A  +  T+GI    +  V                  R++  L      
Sbjct: 267 LTGQHNYMNALAALALADTVGIPREASIKVLKEYAG---------LVHRFQLVLFNNGVR 317

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   +S  N
Sbjct: 318 WINDSKATNVGSTEAALNGL-----HVDGTIYLLLGGDGKSADFSP-----LKNYISADN 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              ++  G     L +  P       +ETM+     I   L  GD+V++    +S     
Sbjct: 368 Y-RLYCFGRDGKQLAELAPE--KSVLTETMEQSLRQIAPLLKTGDMVLLSPACASLDQFK 424

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 425 SFEQRGDIFAQLAKEL 440


>gi|221632098|ref|YP_002521319.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
 gi|221155634|gb|ACM04761.1| UDP-N-acetylmuramate--alanine ligase [Thermomicrobium roseum DSM
           5159]
          Length = 462

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 117/387 (30%), Gaps = 26/387 (6%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGAL-NKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V      VA+  +  IP+        AL   LA + R       IA+ G+ GK+TT  
Sbjct: 80  SAVRAQHPEVAAFAAQRIPIVK----RAALLGWLAASYR------TIAVAGTHGKSTTCG 129

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+ +AL +   T            +  T AR+P    F +         E  +    + P
Sbjct: 130 MIALALDAAGLTPGFAIGAEVRD-LGGTSARLPGGNLFVV------EADEYDYSFLFLEP 182

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+  +   H   F     +A A       L   GT  +  DD     +  +  + G 
Sbjct: 183 DIAVVLNVDHDHPDLFPDRASVARAFRRFLARLRPVGTAVVWADDPVACAVADELQSRG- 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + +FG++  A +++       + S     L        +          ++     + 
Sbjct: 242 HRVVTFGETAEAAYRVLPDGALRDPSGAIWPLALAVPGRHNRLNAAAAVAAVVQVGVPLV 301

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +    ++        F                     I  +  A       A  + +   
Sbjct: 302 VAVRALEHFNGVGRRFEEVGIVNGVRVILDYAHHPREIAATIAAARERFP-AARLWAVFQ 360

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           PH   R    L +     E +    +               L+G    AL  A+ R I  
Sbjct: 361 PHTYSRTARFLTEFAHALEQADLAVVAEIYAAREQP-----LAGIDAAALASAIRR-IPA 414

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                       + +++  GDVV+V  
Sbjct: 415 IAVPDPMAAAETVGAAMRAGDVVLVLG 441


>gi|229918549|ref|YP_002887195.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Exiguobacterium sp. AT1b]
 gi|229469978|gb|ACQ71750.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Exiguobacterium sp.
           AT1b]
          Length = 445

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 113/405 (27%), Gaps = 67/405 (16%)

Query: 86  FGVDDV---------LGALNKLAVAA------RLRSKATIIAITGSVGKTTTKEMLTIAL 130
             V +            A+++            L ++A  +AITGS GKTTT  ++    
Sbjct: 71  VIVKNPGIPYQIPLLQEAMSRHIPIYTEVELAYLATEAEFVAITGSNGKTTTTTLVY--- 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
             + K          +IG P           D  + EL    L  I        P  A +
Sbjct: 128 -ELLKGGERPVHLAGNIGFPAIEVASQAKAGDLIVIELSSFQLMGIE----SFHPRSAAL 182

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             ++ AHL      +  A AK  +F  +     I +   D                    
Sbjct: 183 LNLSEAHLDYHGDFDAYADAKGNLFRRMTNADQIVVKVTDPEVMK-------------RV 229

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G+ +   F   +        W+ V+ +           G H  +N+L  L +V      
Sbjct: 230 PGEIEPTTFSFDRGDASVVDGWVTVRGEKIMPVNELALGGAHNVENVLAALLLVEPFAIP 289

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                + L  F     R +     L +  +     + N    +                 
Sbjct: 290 RTHIERVLRNFGGVAHRTESLGDVLGRAVYNDSKATNNVAAEAALRGFDA---------- 339

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSE 428
             I  L    E G    S         +L N+  V   G      K+    R I     E
Sbjct: 340 -PIVWLCGGLERGADLSSL------APALSNVKAVVAYGETKERFKELGESRQIPSFTVE 392

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           T+             GDV+++    +S             F +L+
Sbjct: 393 TLADAVPLAFEQSETGDVILLSPACASWDQFKTFEERGEQFVQLV 437


>gi|257056719|ref|YP_003134551.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
 gi|256586591|gb|ACU97724.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Saccharomonospora
           viridis DSM 43017]
          Length = 458

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 97/351 (27%), Gaps = 34/351 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
             T +A+TG+ GKTTT  M    L S             ++G  +  A +       + E
Sbjct: 105 PPTWLAVTGTNGKTTTVGMAESMLRSAGVD----AVACGNVGFAVLDAVLA-GHSTLVVE 159

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L   R L     P  +V+  +A  HL    G+ E A+ K  I  G         +
Sbjct: 160 LSSFQLHWSRSLA----PSASVVLNVAEDHLDWHGGLAEYAADKGTIHRGSGTVVANLRD 215

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
               +   L  +      + +     +              +++++   +          
Sbjct: 216 ---PWSRKLAEEHAPPEARRVGFTLDTPRPGELGVVEDLLVDRAFVADPVHAAEELGTLA 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+   L   +++ A                    R            ID+S 
Sbjct: 273 DVRPGGPHNVANALAAAALVRAYGVGPEAVAEGLRSFRPGAHRAVEVGEFDGVRYIDDSK 332

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP +   ++     +     G+           G         +AE L       V L
Sbjct: 333 ATNPHAAIGSLLAHPSVVWIAGGQLK---------GASVDELVAAVAERLR-----GVVL 378

Query: 407 SGFHVLALKDALPRSIHVHYS--------ETMDGLFLFIQSSLVDGDVVVV 449
            G       +AL R               E M       +     GD V++
Sbjct: 379 LGADADVFAEALARHAPDVLVRRIGSGDDEPMTAAVKAARELARPGDAVLL 429


>gi|269798173|ref|YP_003312073.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282850402|ref|ZP_06259781.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
 gi|269094802|gb|ACZ24793.1| UDP-N-acetylmuramate/alanine ligase [Veillonella parvula DSM 2008]
 gi|282579895|gb|EFB85299.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella parvula ATCC
           17745]
          Length = 460

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 133/418 (31%), Gaps = 49/418 (11%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH+  ++      G   +V +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L         I          L  +    
Sbjct: 105 TDG---------IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E   S           + PH  VIT I   H+ ++  ++ + +A  E  E L 
Sbjct: 153 KGHFSVVEADES-----DGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +  D+     + ++      +T  ++G   N D+  +           +V  +G
Sbjct: 208 EAGKAIVCGDNENIRYVMSRV----KRTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++  +   +         +   IV+     V+      ++      + +        G 
Sbjct: 264 INISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMKAA-------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFATAFTSADEIY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
               +       +  +G     + DA+  + H  VHY  ++D +   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPI--AGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLV 436


>gi|188997128|ref|YP_001931379.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|254766029|sp|B2VA52|MURC_SULSY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188932195|gb|ACD66825.1| UDP-N-acetylmuramate/alanine ligase [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 454

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 126/387 (32%), Gaps = 41/387 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +   +     L IP           L +L            IAI GS GKTTT  M+   
Sbjct: 78  DNPEMIKAKQLGIPTI----PRGEMLAELMRFKYG------IAIAGSHGKTTTTSMVGTV 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L         +                    +F + E   S           + P I  I
Sbjct: 128 LGKTGFDPTVVIGGKLE---AYGSNAKLGRGEFLVTESDES-----DGSFLKLTPTIVSI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   H+  +  +E+I  A       +   G   +N DD   + +        IK    
Sbjct: 180 NNIDLEHIGFYKDLEDIKKAFVAFANKVPFYGAAAVNIDDENVKSILPYIERKVIK---- 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG S++AD +    +  + +   +V       E+     G H   N L T+ I + L+  
Sbjct: 236 FGFSEDADIRAYDVRLENGRYKFKVND---FGEIHLSVPGIHNVYNALATIAICNELSVP 292

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++L  F        + R  +      ++ + Y  +P  +KA +S         + 
Sbjct: 293 FCVIKESLENFK-----NAKRRFEIKYSNDIIVIDDYAHHPTELKATLSAARDY--FKDR 345

Query: 370 RRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPR-S 421
           R IAV          +         ++  +  ++ V+ +G           L + +    
Sbjct: 346 RIIAVFQPHRYSRLNALFEEFAKAFDIPDITIVTEVYSAGESPIENVSGEKLAEKIREYG 405

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +V+Y   ++     +++ +  GDV++
Sbjct: 406 NNVYYVSNLEEAENLLKNIIQKGDVIL 432


>gi|126172655|ref|YP_001048804.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|152998953|ref|YP_001364634.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS185]
 gi|160873539|ref|YP_001552855.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS195]
 gi|217971634|ref|YP_002356385.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS223]
 gi|304411642|ref|ZP_07393254.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|307306306|ref|ZP_07586051.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|166224727|sp|A3CZM2|MURC_SHEB5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224728|sp|A6WID2|MURC_SHEB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082498|sp|A9KY30|MURC_SHEB9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766021|sp|B8E699|MURC_SHEB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|125995860|gb|ABN59935.1| UDP-N-acetylmuramate--L-alanine ligase [Shewanella baltica OS155]
 gi|151363571|gb|ABS06571.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS185]
 gi|160859061|gb|ABX47595.1| UDP-N-acetylmuramate--alanine ligase [Shewanella baltica OS195]
 gi|217496769|gb|ACK44962.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS223]
 gi|304349830|gb|EFM14236.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS183]
 gi|306911179|gb|EFN41606.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica BA175]
 gi|315265769|gb|ADT92622.1| UDP-N-acetylmuramate/alanine ligase [Shewanella baltica OS678]
          Length = 488

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 132/390 (33%), Gaps = 36/390 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +   L IP+     V  A   LA   R R     +AI G+ GKTTT  ++    
Sbjct: 92  ENPEILAAKELRIPI-----VRRA-EMLAELMRYRHG---VAIAGTHGKTTTTSLIASVY 142

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +    +            L     +   G     ++   E       ++P ++V+T
Sbjct: 143 GQAGRDPTFVIGG--------LLNSAGTNARLGTSRYLIAEADESDASFLHLQPMVSVVT 194

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  + G  E   +    F         +        + +  +      + + ++
Sbjct: 195 NIEADHMDTYGGDFEKLKSTFVDFLHNLPF---YGVAVVCIDDAVVREIMPRIGRQLVTY 251

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G S +AD Q   + Q   Q    V+ +GK+  ++V +  G H   N L  + + +    D
Sbjct: 252 GFSDDADVQALNFSQQGHQCRFTVRRKGKADLDLVLNLPGQHNVLNALAAIAVATEDEID 311

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                +AL  F     R +            ++ + Y  +P+ + A I       P    
Sbjct: 312 DSAITQALVEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPDK-- 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALPR 420
               V+         ++  + D  EVLS  +   +          ++G    AL  ++  
Sbjct: 370 --RLVMAYQPHRYTRTRDLYEDFVEVLSQVDCLLLLDVYSAGEAPITGADGRALCRSIRL 427

Query: 421 SIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
              +   +  + D L   +   L +GD+++
Sbjct: 428 RGQLDPIFIASPDQLAEVLPDVLQEGDLLL 457


>gi|238754435|ref|ZP_04615790.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
 gi|238707264|gb|EEP99626.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia ruckeri ATCC
           29473]
          Length = 476

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 139/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 64  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +            +        + I E   S    +   
Sbjct: 115 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGVHARLGSSRYLIAEADESDASFLH-- 169

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 170 ---LQPMVAIVTNIEADHMETYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVVRELLP 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 227 RV----GRHITTYGFSDDADVQIASYRQIGPQGHFTLRRQDKSLLTVTLNAPGRHNALNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D +  ++ALS F     R              +    ++ + Y  +P 
Sbjct: 283 AAAVAVATEEGIDDEAILRALSSFQGTGRRFDFLGNFPLEKVNGKSGSVMLVDDYGHHPT 342

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D A VL   ++     V+ +G
Sbjct: 343 EVSATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLEDVDVLLMLDVYAAG 398

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L D D+++V+ 
Sbjct: 399 ETAIPGADSRSLCRTIRNRGQLDPILVSDSDSVPSVLAKVLNDNDLILVQG 449


>gi|239994434|ref|ZP_04714958.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii ATCC
           27126]
          Length = 481

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 141/403 (34%), Gaps = 48/403 (11%)

Query: 67  LVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++VV++ +      +       IP+        A   LA   R R     IA+ G+ GKT
Sbjct: 77  VIVVSSAINEQNPEIIVAREKRIPII-----RRA-EMLAELMRFRHG---IAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +++   +  +     +     +               + I E   S    +     
Sbjct: 128 TTTSLISTIFAEAEYDPTFVIGGLLNS---AGTNARLGKSRYLIAEADESDASFLH---- 180

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            ++P ++V+T I   H+  +     ++     +    L   G   +  DD+  + ++ + 
Sbjct: 181 -LQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCGDDANIQEIRPRI 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLM 298
                ++I ++G   + D++         ++   V    +   ++  +  G H   N L 
Sbjct: 240 ----GRSILTYGFESHNDYRAENVSLSFGKANFTVIRPEREPLDITLNLTGNHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +    D D  I+AL+ F     R ++            + + Y  +P  ++A I+
Sbjct: 296 AIAVATDEGVDDDAIIRALASFGGIGRRFEQLGTFTTSKGEVCLVDDYGHHPTEVRATIA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
                 P        V+         ++  + D  EVL   ++  + L            
Sbjct: 356 AARANWPDK----RLVMVYQPHRFTRTRDLYEDFVEVL--SSVDALLLLDVYAASEQPIE 409

Query: 408 GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
           G    AL  ++ +   +   Y    D L   + + + DGD+V+
Sbjct: 410 GADSKALCRSIRQRGQIEPVYVGDKDALPAILANIMQDGDIVM 452


>gi|116329173|ref|YP_798893.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330219|ref|YP_799937.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|122282018|sp|Q04V91|MURE_LEPBJ RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|122283045|sp|Q04Y85|MURE_LEPBL RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|116121917|gb|ABJ79960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116123908|gb|ABJ75179.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 500

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 68/472 (14%), Positives = 132/472 (27%), Gaps = 49/472 (10%)

Query: 14  IQGHSIGIVPQ-GFVNGISIDSRSIAPQEAFFAIK---GPHYDGHDFILHAVQKGAGLVV 69
           +     G  P    +  I  DSR   P++ F  +    G      +FI       A +++
Sbjct: 17  LGSLPSGKNPDSVPIEYIQSDSRKTNPEDIF-CVPESIGTKK--GEFIS---NTKASVIL 70

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITGSVGKTTTKEMLT 127
           ++     SI S  I +   +D      ++A         T  I+A+TG+ GKT+   +L 
Sbjct: 71  LHRSSNISIDSSKIVLECEEDPEQLQGRIASFLLGHPSKTLEIVAVTGTNGKTSLTNILF 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLG 173
                  K    IG+     G                    +   D       +  S  G
Sbjct: 131 ALAKDQGKICGLIGTIGVKFGDRSIDTGYTTPDASSLNLILKQMKDEGVTTVFMEASSHG 190

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF 231
                   +     V T +   HL   S +E+   +K  +FE   + K+    L+Y    
Sbjct: 191 LKLGRIGGISLKAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDVSKSPFAVLDYSSPG 250

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  K                  ++++       + +   + L G   + +       
Sbjct: 251 GNELHRKIRNNLPDLPIKALDGIGGEYKVSNPFLTLQGTSYVLSLPGNRSQTIST--NLL 308

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            + N+  T                  S          R++   ++    +    Y   P 
Sbjct: 309 GSFNVRNTALAFLTGLGLGLDPKGMFSSLKEIPQIPGRFQIVYSKDRSRMAVVDYAHTPD 368

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  I  +    P         L  +   G             ++      V L+  + 
Sbjct: 369 ALENIIRSVRNSRPKR-------LITLFGCGGDRDKTKRPKMARIAEELSDQVILTSDNP 421

Query: 412 L-----ALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
                 A+ D +       ++                  L +G  ++V  K 
Sbjct: 422 RSEKPEAILDEIQSGFSPGFTPLLREVDRARAISEGVGILPEGGCLLVAGKG 473


>gi|294828010|ref|NP_712228.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
 gi|302393763|sp|Q8F4J4|MURE_LEPIN RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|293385856|gb|AAN49246.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 504

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/472 (14%), Positives = 131/472 (27%), Gaps = 55/472 (11%)

Query: 20  GIVPQ-GFVNGISIDSRSIAPQEAF-FA--IKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  P    +  I  DSR     + F  A  I G      +FI +A    A L+++ TD  
Sbjct: 21  GKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKK--KEFISNA---KASLILLRTDSN 74

Query: 76  ASIG-----SLSIPVFGVD-DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
                    + S      + D      ++A            I+A+TG+ GKT+   +L 
Sbjct: 75  VLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSKDLDIVAVTGTNGKTSLTNILF 134

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLG 173
                       IG+     G  +                 +   +       +  S  G
Sbjct: 135 SLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSHG 194

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF 231
                 + +     V T +   HL   S +E+   +K  +FE     K+    L+Y    
Sbjct: 195 LKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPN 254

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  K        +          +++       + +   + L   + E         
Sbjct: 255 GSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGTSYVLGLP-GNQERKISTNLLG 313

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                   L  ++ +   +D    + S+    +  G+             + + Y   P 
Sbjct: 314 SFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVD-YAHTPD 372

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  I  +    P         L  +   G             ++      V L+  + 
Sbjct: 373 ALENIIRSVRDSQPKC-------LITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNP 425

Query: 412 L-----ALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
                  + D +       +             +   S L +G  ++V  K 
Sbjct: 426 RTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKG 477


>gi|163785113|ref|ZP_02179819.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879617|gb|EDP73415.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 314

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 23/296 (7%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   + +     + T +   HL     +E    AK   F+ + +     + 
Sbjct: 1   MEVSSHAAHQMRIYGLNFEGGIFTNLTQDHLDYHKDMESYFKAKKMFFDYILEKNKKAVF 60

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             +      +     L           K+ +F++   +   E  +  V  QGK   +   
Sbjct: 61  SINVDDFYGERLYRQLKNIANVISYGRKSEEFKIIDMQTQPEGCFFTVSFQGKRFNLYSK 120

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G     N+      ++    D++   +A +   P  G     R  +      L+   Y
Sbjct: 121 LRGDFNIYNISAAFSFLARYGIDIEFLKEATAKLKPIRG-----RFEIVYSKDFLVVNDY 175

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P +++  +  + ++     GR I V G     G             ++      + L
Sbjct: 176 AHTPDALENILKSIQKLKR---GRLIVVFGA----GGDRDKTKRPKMGKIAEELADVIVL 228

Query: 407 SGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +  +         +K  +     +      +           + DVV++  K 
Sbjct: 229 TSDNPRSEDPKDIIENIKAGMENKKPLLEIIDREQAIKEAIKMAKENDVVLIAGKG 284


>gi|51595036|ref|YP_069227.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894042|ref|YP_001871154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis PB1/+]
 gi|60390355|sp|Q66EK7|MURD_YERPS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|51588318|emb|CAH19926.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697068|gb|ACC87697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 438

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +   +         +IGVP     +  D  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSV----GVGGNIGVPALTL-LKQDNQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LTVLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 IVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRF---QLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +   ETM      +   ++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQLT--ETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|49474458|ref|YP_032500.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           quintana str. Toulouse]
 gi|62900524|sp|Q6G122|MURD_BARQU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|49239962|emb|CAF26367.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           quintana str. Toulouse]
          Length = 466

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 65/415 (15%), Positives = 118/415 (28%), Gaps = 51/415 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+    A I  +      V      L       R +     IAITG+ GK+TT  +L  
Sbjct: 85  VVDKARQADIEIVGDIELFVRARNHFLQH--SGFRDQ-DVPFIAITGTNGKSTTTALLAH 141

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  +            +IG  +   +  V     + E     +     LT  ++P I +
Sbjct: 142 LLEQMGYDVQMG----GNIGTAILTLKPFVKKRIYVIECSSFQI----ELTPSLQPTIGL 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
           +  +   H+           AK  +  G         N      ++ L  + H +G  + 
Sbjct: 194 LLNLTSDHIDRHGSFAAYVQAKRRLVTGASYAFISVDNAVCQALYQQLLDEGHQVGAVSK 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F ++     + + +  C          Q   +  +        + N    L +++ L 
Sbjct: 254 EHFVENGFYADRTKLFSVCQG--------QRHMLADLADMTALRGSHNAQNALMVLATLQ 305

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A   +           +G   R +     G    I++S   N  +   A+S  + I    
Sbjct: 306 ALKISDPHIEKYLASYKGLAHRMQQVRKMGPVLFINDSKATNAEASAPALSTFNDI---- 361

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
                 V G   E G  +             + I   +L G         +  +     S
Sbjct: 362 ---FWIVGGQAKEGGIEALRGFF--------HKIRKAYLIGEAAQEFAGVIGSAFPFSMS 410

Query: 428 ETMDGLFLFIQSSL----VDGDVVVV---KSS---------NSCGFYRLINLLLE 466
            T++                  VV+     +S             F   +  L E
Sbjct: 411 LTLENAVHEATVDAMCCKAKEAVVLFSPACASYDQFKNYEVRGEAFVSFVMQLKE 465


>gi|45657730|ref|YP_001816.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|59798331|sp|Q72R81|MURE_LEPIC RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|45600970|gb|AAS70453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 506

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 67/472 (14%), Positives = 131/472 (27%), Gaps = 55/472 (11%)

Query: 20  GIVPQ-GFVNGISIDSRSIAPQEAF-FA--IKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  P    +  I  DSR     + F  A  I G      +FI +A    A L+++ TD  
Sbjct: 23  GKNPDSIEIEYIQSDSRKTNKNDIFCVADSI-GSKK--KEFISNA---KASLILLRTDSN 76

Query: 76  ASIG-----SLSIPVFGVD-DVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLT 127
                    + S      + D      ++A            I+A+TG+ GKT+   +L 
Sbjct: 77  VLNDLLEVMNSSKIFLECEIDPEQLQGRIASFLLGHPSKDLDIVAVTGTNGKTSLTNILF 136

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLA--------------RMPVDVDFGIFELGMSHLG 173
                       IG+     G  +                 +   +       +  S  G
Sbjct: 137 SLAKDQGINCGLIGTIGVKFGDRVIDTGYTTPDASSLNLILKEMKEEGITTVFMEASSHG 196

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSF 231
                 + +     V T +   HL   S +E+   +K  +FE     K+    L+Y    
Sbjct: 197 LKLGRMNGISVRAGVFTNLTQDHLDFHSDMEDYFESKFRLFEILDFSKSTFAVLDYSAPN 256

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L  K        +          +++       + +   + L   + E         
Sbjct: 257 GSKLYHKILNRFPDLLIYALDDIYRKWKISDISLNLQGTSYVLGLP-GNQERKISTNLLG 315

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
                   L  ++ +   +D    + S+    +  G+             + + Y   P 
Sbjct: 316 SFNVRNTALAFLTGIGIGLDLEKMSNSLEKIPQIPGRFQIIYSKDRSRMAVVD-YAHTPD 374

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +++  I  +    P         L  +   G             ++      V L+  + 
Sbjct: 375 ALENIIRSVRDSQPKC-------LITLFGCGGDRDRTKRPKMARIAEELSDQVILTSDNP 427

Query: 412 L-----ALKDALPRSIHVHYSE-----TMDGLFLFIQSSLVDGDVVVV--KS 451
                  + D +       +             +   S L +G  ++V  K 
Sbjct: 428 RTEKPETILDEIQTGFSSGFIPLLREVDRAKAIVEGISCLPEGGCLLVAGKG 479


>gi|238019064|ref|ZP_04599490.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
 gi|237864319|gb|EEP65609.1| hypothetical protein VEIDISOL_00926 [Veillonella dispar ATCC 17748]
          Length = 456

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 83/295 (28%), Gaps = 27/295 (9%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                F + EL    L          RP  A++  I   HL+    +E   +AK  IFE 
Sbjct: 154 MPADGFLVAELSSYQL----ETIKHFRPIGAIMLNITADHLARHKTMENYIAAKERIFEN 209

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              T  + LN DD     +           + S     +    +       +      + 
Sbjct: 210 QLSTDFMVLNIDDPIVADM--------EHRVLSHILKISQHQVVPNGAYYDKGQCYVTKD 261

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +  +    I    + N+   L ++++       A     +     G   R       
Sbjct: 262 GIATPVIGSDDIHIPGSHNIENILTVIALTYVLGVPAETIHRIISEFHGVEHRLERVKTI 321

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T  ++S   N  S+  A+    Q      G        M  + +  Q         L
Sbjct: 322 DGITFYNDSKATNVDSVVKALESFDQSVILLAGGHD----KMTPLEDFMQ---------L 368

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +   V   G      + A   +    ++ + +M             GD+V++
Sbjct: 369 VKDHTKAVIFMGEAADRFEAAAKEAGVQPIYRASSMKDAVEQGYKLADQGDIVLL 423


>gi|225849381|ref|YP_002729545.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644549|gb|ACN99599.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 454

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 76/406 (18%), Positives = 129/406 (31%), Gaps = 39/406 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +   +     L IP           L +L            IAI GS GKTTT  M+   
Sbjct: 78  DNPELKKARELGIPTI----PRGEMLAELMRFKYG------IAIAGSHGKTTTTSMVGTV 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L         +                    +F + E   S           + P I  I
Sbjct: 128 LGKTGFDPTVVIGGKLE---AYGSNAKLGRGEFLVAESDES-----DGSFLKLTPTIVSI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   HL  +  +E+I +A  E    +   G +  N DD   + +  +      + I  
Sbjct: 180 NNIDLEHLGFYKDLEDIKNAFVEFANKVPFYGFVVANIDDENVKSIIPRI----ERKIIK 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG SK+AD +    K  + +   ++       E+     G H   N L T+ I + L   
Sbjct: 236 FGLSKDADIRGYDLKLVNGRYKFKIND---FGEIHLSVPGIHNVYNALATISICNELGVP 292

Query: 310 VDTAIKALSVFHPKEGRGKRYR-----CALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                ++L  F   + R +           +        ++  +    M     ++S   
Sbjct: 293 FCVIKESLENFKNAKRRFEIKYSDGILVIDDYAHHPTEIKATLSAARDMYGQNRIISVFQ 352

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIH 423
           PH   R  ++  +  E  ++     I          I      G     L D +  R  +
Sbjct: 353 PHRYSRVYSLFDEFVESFDIPDIVIITDIYSAGENPIE-----GVSGQLLADKIRQRRNN 407

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSCGF-YRLINLLLEE 467
           V Y + ++     ++S + +GDVV+   + N       L   L E 
Sbjct: 408 VFYVKDVNEAESLLKSIIKNGDVVLTMGAGNITQLSDNLSKYLEER 453


>gi|224419204|ref|ZP_03657210.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253828133|ref|ZP_04871018.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313142708|ref|ZP_07804901.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|253511539|gb|EES90198.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
 gi|313131739|gb|EFR49356.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter canadensis MIT 98-5491]
          Length = 434

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 58/479 (12%), Positives = 125/479 (26%), Gaps = 99/479 (20%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           +S DSR ++   AFF  +        ++  A +KG    V   ++ +             
Sbjct: 14  LSDDSREVSKDCAFFVTQSSK----KYLKEAQEKGCKFFVTPKELSS------------- 56

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK-------------- 135
                         L+     I ITG+ GKTTT  M+   L  +                
Sbjct: 57  -------------YLKLNLQCIGITGTNGKTTTAAMIYSILLDMGYKVGLLGTRGFFING 103

Query: 136 TYACIGSYNNHIGVPLT---LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                        + +            +F + E+  S     +     +   + ++T I
Sbjct: 104 IQKRPKGLTTPSTLEIYTAINEAKQEGCEFFVMEV--SSHAITQNRIEGLEFALKILTNI 161

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              HL     +E   + K   F                  + L  K        + +   
Sbjct: 162 TSDHLDYHKTLENYIATKNSFFSN-------------PNDKKLINKDEKNAQYPLQNTLT 208

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                      K  S +  +  Q+   S              N+   L  +  +      
Sbjct: 209 YGIESTSTFSIKAYSLKGGITAQITYGSQVATLDSPLLGKH-NLYNALAAIGAVQMLTQK 267

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            ++ ++      G        +NQ    ++D ++  +         +  +I+        
Sbjct: 268 PLQEIANQLENFGGVMGRMQIINQKPLIVVDFAHTEDGMEQIFQSFLHQKIA-------- 319

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSI- 422
            + G     G              +      ++++  +         +  +   +P+S  
Sbjct: 320 VLFGA----GGDRDKTKRPKMGFCASKYAQKIYITSDNPRNEDPKTIMQEILSGIPQSKR 375

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVV--K--------SSNSCGF---YRLINLLLEE 467
             V   E          + L + +V++V  K           +  F     +   L  +
Sbjct: 376 SRVILEENRALAIQKAIAELKEDEVLLVLGKGDETYQIIGDRTLHFDDSEEIKKALKAK 434


>gi|170025735|ref|YP_001722240.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis YPIII]
 gi|169752269|gb|ACA69787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis YPIII]
          Length = 438

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 128/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +   +         +IGVP     +  D  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSV----GVGGNIGVPALTL-LKQDNQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LTVLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRF---QLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +   ETM      +  +++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQLT--ETMAQAMALVAKAVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|163741576|ref|ZP_02148967.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
 gi|161385310|gb|EDQ09688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis 2.10]
          Length = 465

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 119/405 (29%), Gaps = 45/405 (11%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK-- 107
           + GA      ++ +  +  +     PV            +D+      +A     R    
Sbjct: 60  KAGAFDDIASLIVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQA 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I+A+TGS GK+TT  +L   L    +          +IG  +     P      + EL
Sbjct: 120 PRIVAVTGSNGKSTTVALLHHILQEAGR----ESQLAGNIGRGVLDIDPPGSGGIVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P +AV T ++P HL   +G+    +AK  +F        I    
Sbjct: 176 SSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVD 231

Query: 228 DDSFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +D        L   +    +  I +  K     +Q+   K    +     Q     +  +
Sbjct: 232 EDEGLYLAGQLSEAASDDRVIRISASRKLTGPGWQVFARKGFLSEYRKGRQAASIDLRQM 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN          L         AL+ +     R    +          +++
Sbjct: 292 QGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRS---QTIATHEGVRYVND 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S   A+S    I     G      G +  +   +               +   
Sbjct: 349 SKATNLDSAVKALSAFDNIRWICGGLEKD--GGLEALRGQT-------------GKVRKA 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ G        A+   +      TM        +    GD V++
Sbjct: 394 YVIGREAAGF--AMQLDVEAEVCITMAEAVARASAEAEAGDTVLL 436


>gi|121595963|ref|YP_987859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acidovorax
           sp. JS42]
 gi|120608043|gb|ABM43783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax sp.
           JS42]
          Length = 498

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 54/397 (13%), Positives = 105/397 (26%), Gaps = 26/397 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML 126
           +   ++   + +       V+  LG   +     R        ++AITG+ GKTT   + 
Sbjct: 72  LSPNEIAPVVIAARARQISVEGELGLYAQALRELRAGQGYAPAVLAITGTNGKTTVTSLT 131

Query: 127 TIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            + +    K  A  G+     +             +  + EL    L           P 
Sbjct: 132 GLLVECADKRVAVAGNIGPTLLDTLAQHIDAGTLPEVWVLELSSFQLD----GVQGFEPT 187

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALG 243
            A +  I   HL     ++  A AK  IF           + +        ++ K     
Sbjct: 188 AAAVLNITQDHLDWHGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRVKLQKPQ 247

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +FG            +  S  +W+    +              +    LM    +
Sbjct: 248 LRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRLMPADAL 307

Query: 304 SILTADVDTAIKALSVF-----HPKEGRGKRYRCALNQGFFTLIDESYN-----ANPASM 353
            I          A          P        R    +                 +    
Sbjct: 308 RIRGRHNAINALAALALAQAAGCPLAPMLYGLREYRGEPHRVESVGIVREVEYFDDSKGT 367

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +V +      + R + +LG   +  + S      +A          V L G     
Sbjct: 368 NVGATVAALTGLGADRRLVVILGGDGKGQDFSP-LAAPVARYARA-----VVLIGRDAPQ 421

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ AL    + +  + T+             GD V++
Sbjct: 422 IRAALQGCGVPLQDAATLPEAVQLATQRAHAGDAVLL 458


>gi|90962026|ref|YP_535942.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           salivarius UCC118]
 gi|118595662|sp|Q1WT99|MURD_LACS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90821220|gb|ABD99859.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           salivarius UCC118]
          Length = 458

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 85/291 (29%), Gaps = 31/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T I  AH+      E   +AK  I     + 
Sbjct: 163 DTIVTELSSFQLLGITEYH----PKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTED 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D+  ++ L  +S A              +     K        ++  +     
Sbjct: 219 DYFVVNWDNEEWQELSQRSKAK---------IVPFSRLGKSKDGAYVAGGYLFYKEDKIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  I     +   + L+ F     R    +         
Sbjct: 270 PVDNIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFSGVRHRT---QYVTTLNGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + +         +  G    + +L    + G   +     L        
Sbjct: 327 FYNDSKATNMEATEK--------ALAGFNNPVVLLAGGLDRGFTFEKLEPSL-----KNK 373

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV 449
           +  + + G     +  A   +      +T D             +GDV+++
Sbjct: 374 VHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSNEGDVILL 424


>gi|319404509|emb|CBI78114.1| UDP-N-acetylmuramate--alanine ligase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 456

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 136/418 (32%), Gaps = 46/418 (11%)

Query: 53  GHDFILHAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GH     A   GA  +V+++T +  +             V+     LA   R R     I
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFR---RTI 91

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+   L +       I     +            D D+ + E   S 
Sbjct: 92  AIGGTHGKTTTTSMVAALLDAGHFDPIVINGGIIN---AYGTNARMGDGDWMVVEADES- 147

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   IAV+T I   HL ++     I  A  +  E +   G   +  D   
Sbjct: 148 ----DGTFLKLPADIAVVTNIDVEHLDHYGNFNAIREAFRQFVENVPFYGFAVMCIDHPE 203

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-------QLQGKSMEVV 284
            + L ++ H      + ++G +  AD +        +++  ++         + +   ++
Sbjct: 204 VQTLASRIHDR---WVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKTEINNLI 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + I   L    +   K L+ F   + R  +            I +
Sbjct: 261 LPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVKRRFTKTGNWNG----VEIFD 316

Query: 345 SYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  +KA +           ++ + PH   R   +  D       + +  I     
Sbjct: 317 DYGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDFSTCFNDADTVMITPVYA 376

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                I     +GF    L + +  + H  VH   +++ +   +      GD VV   
Sbjct: 377 AGEEPI-----AGFGSKELVEHIQMAGHRDVHLINSLEDIISIVSRLAKSGDYVVFLG 429


>gi|307328984|ref|ZP_07608152.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
 gi|306885346|gb|EFN16364.1| UDP-N-acetylmuramate/alanine ligase [Streptomyces violaceusniger Tu
           4113]
          Length = 474

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 76/442 (17%), Positives = 146/442 (33%), Gaps = 58/442 (13%)

Query: 44  FAIKGPHYDGHD-----------------FILHA---VQKGAGLVVVNTDMVASIGSL-- 81
            A++G    G D                  I HA   +   A  VVV++ + A    L  
Sbjct: 31  LAMRGARVSGSDTKDSPIVGALRELGATVHIGHAAGNIAADATGVVVSSAIRADNLELVT 90

Query: 82  ----SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                I V    D L AL            +  IA+ G+ GKTTT  ML ++L ++    
Sbjct: 91  AHERGIAVVHRSDALAALMD---------GSRPIAVAGTHGKTTTTSMLAVSLRTLGLDP 141

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
           + +   +         +    D +  + E   S     ++      P +A+I  +   H 
Sbjct: 142 SYVIGGDLD---APGSSARHGDGEIFVAEADESDRSFHKYA-----PEVAIILNVELDHH 193

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA-LGIKTIYSFGKSKNA 256
           +N++ ++EI ++       +   G + ++ D S    L A+         + ++G+ ++A
Sbjct: 194 ANYASMDEIYASFETFVGRIRSGGALVISADQSGARELTARVSGGEEPPRVLTYGEDESA 253

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D ++   +     S + V+L                 ++  +         A +      
Sbjct: 254 DVRVLAIEPHGLTSEVTVRLAESLGGAEITFTVSVPGRHYALNAVAALTAGAALGVPAGE 313

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L+         KR            + +SY  +P  + A +  +      GEGR + V  
Sbjct: 314 LAPALASYTGVKRRLQLKGTAAGVQVIDSYAHHPTEIAADLEAIRG--GAGEGRVLVVFQ 371

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHY 426
               +   +Q    ++ E L+L + S V                   +  A      V  
Sbjct: 372 P--HLFSRTQELGTEMGEALALADASVVLDIYPAREDPVPGITSGLVIDAAARHGADVTA 429

Query: 427 SETMDGLFLFIQSSLVDGDVVV 448
               + +   I      GD+V+
Sbjct: 430 EHDRNAVPELIAGMAKPGDLVL 451


>gi|303246308|ref|ZP_07332588.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
 gi|302492371|gb|EFL52243.1| UDP-N-acetylmuramate/alanine ligase [Desulfovibrio fructosovorans
           JJ]
          Length = 470

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/386 (17%), Positives = 123/386 (31%), Gaps = 34/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +     IPV         +  LA   RLR+    IA+ G+ GKTTT  +L    
Sbjct: 90  ENPEVVAARERGIPVI----PRAEM--LAELMRLRNG---IAVAGTHGKTTTTSLLATIF 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        I     +                G  E  ++   E       + P  +V+T
Sbjct: 141 TEAGYDPTVIIGGRLN--------AYGAGARLGQGEYLIAEADESDGSFLCLSPIASVVT 192

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   HL +++ +  I  A  +   G+   G   +  DD     L  + +      I ++
Sbjct: 193 NVDADHLDHYADLAAIDDAFVDFLNGIPFYGVNVVCLDDPGVARLLPRVNRP----ILTY 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +  A  + +  +  +   +          E+     G H   N L  +G+      ++
Sbjct: 249 GVTSQARLRGKILETGAASRFSVTLDGKDLGEMRLAHPGRHNVLNALGAIGLSLEAGIEL 308

Query: 311 DTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                AL+ F     R +R           + G       +  A   ++     ++    
Sbjct: 309 PVIAAALAKFGGVGRRFERKGERNGVVVVDDYGHHPAEIRATLATARTVYPDRRLVVAFQ 368

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SI 422
           PH   R  A+ GD C   E +    +      S   I      G    +L   + +    
Sbjct: 369 PHRFSRTKALFGDFCTCFEAADELLLTEIYPASEAPI-----PGVSGESLAQGIRQVSKT 423

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV 448
           +V Y      +   +   +  GD+++
Sbjct: 424 NVSYYRDFPAMEEALPGIVRPGDLLL 449


>gi|294793905|ref|ZP_06759042.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
 gi|294455475|gb|EFG23847.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 3_1_44]
          Length = 460

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 133/418 (31%), Gaps = 49/418 (11%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH+  ++      G   +V +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L         I          L  +    
Sbjct: 105 TDG---------IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E   S           + PH  VIT I   H+ ++  ++ + +A  E  E L 
Sbjct: 153 KGHFSVVEADES-----DGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +  D+     + ++      +T  ++G   N D+  +           +V  +G
Sbjct: 208 EAGKAIVCGDNENIRYVMSRV----KRTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++  +   +         +   IV+     V+      ++      + +        G 
Sbjct: 264 INIGRISLCVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMKAA-------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFATAFTSADEIY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
               +       +  +G     + DA+  + H  VHY  ++D +   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPI--AGIDGRTIPDAVEAATHKVVHYVPSVDDIPAVLAKIVRPNDLV 436


>gi|237751733|ref|ZP_04582213.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373099|gb|EEO23490.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 463

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                 L  + G  +        +G++ + + +     FFA+        D I  A+  G
Sbjct: 1   MRLEKALDILYGELVNTPFISAFSGVTYNVKKVVSGTLFFALNP------DDIKRAIANG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           A  +V   DMV S     I    V  +  ++ +      L SK T++ +T
Sbjct: 55  AYGIVFEGDMVCS-DDTEIAWIKVRSIDQSMRRFVRYFLLESKYTLVMLT 103


>gi|227115174|ref|ZP_03828830.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 461

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 114/367 (31%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+T  L         +       GVP          D  F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIG-----GVPGNFTVSARLGDSPFMVLEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   V+  +   H   F  ++ I      +   +  +G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D   + +            +S  +    +   R  K   + S  +V L  + +  VH
Sbjct: 220 PANDLNLKQVM-------GMGCWSEQELVGEEGTWRAQKVSIDASQYQVYLNNELVGEVH 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      +    L  ++           A           +R      +   T+ D+ 
Sbjct: 273 WKLVGEHNMH--NGLMAIAAAHHVGVLPADACRALGGFINARRRLELRGTEHGVTVYDDF 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             A+  +   A     +    G  R +AVL    +  ++G         L          
Sbjct: 331 --AHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            V+L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  
Sbjct: 383 EVFLFQPTHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV-MSNG-GFGN 440

Query: 460 LINLLLE 466
           + N LL+
Sbjct: 441 IHNKLLD 447


>gi|319941745|ref|ZP_08016067.1| UDP-N-acetylmuramate [Sutterella wadsworthensis 3_1_45B]
 gi|319804678|gb|EFW01545.1| UDP-N-acetylmuramate [Sutterella wadsworthensis 3_1_45B]
          Length = 460

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 121/418 (28%), Gaps = 38/418 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +AV +G    ++   + A +   S P +  +++L            +   T++A+ G+
Sbjct: 67  IGNAVSRGNP--LLEAILNAGLPYTSGPQWLSENILT----------GKKARTVLAVAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  MLT  L         +       G     A +       + E          
Sbjct: 115 HGKTTTTSMLTWILREAGLHPGFLIGGVPCWG--EQSAALGDPQAPFVIEADEYDTAFFD 172

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP IA++  +   H   F  ++ I +    +   +   GTI  N      + 
Sbjct: 173 KRSKFVHYRPRIAILNNLEYDHADIFENLQAIETQFHHLVRTMPSEGTIIANAKAPALDR 232

Query: 235 LKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + A+     ++   + FG                 + +  V++         + +    A
Sbjct: 233 VLARGCWSKLERFDTPFGTPDGWTLAEDGSASLGAEVFGAVKIHMPGRYNELNALAAVAA 292

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
                 L   ++       +   +      +G         +                  
Sbjct: 293 ARAAGVLPQAALKAL---ESFPGVHRRQEVKGEADGCLVIDDFAHHPTAIHETIDGVRGR 349

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                +L+ + P     +   LG M +    + +    +               G     
Sbjct: 350 WPGRRLLAVLEPRSNTMK---LGTMKDRLAGALADADAVFCYAGP---------GVAWSP 397

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEE 467
            +       H   +   D L   + ++   GDV++   SN  GF     +L+  L  +
Sbjct: 398 EEALKALGSHAWATHDFDALVTQVVNAARPGDVIL-CMSNG-GFGGIHGKLLAGLKAK 453


>gi|288925521|ref|ZP_06419454.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
 gi|288337737|gb|EFC76090.1| UDP-N-acetylmuramate--alanine ligase [Prevotella buccae D17]
          Length = 458

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 106/352 (30%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M    +   ++         +      T   +    DF + E    
Sbjct: 115 LCVAGTHGKTTTSTMCAHIMHQSQQDCNAFLGGISKN--YGTNYILSDKSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++  G + L+ +  
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQPGGALILHKNLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + ++          +Y +   +          +  E ++  +        V+      
Sbjct: 228 MQQHVQE------GVRVYEYSLDEGDFHAENIKIENGEITFDFISPVECVRNVMLGQPVP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENGVAAMAMAQLNGCTAEELRYGMKTYAGVDRRFDFKIKNDRHVFLSDYAHHPKEIY 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +          +          +   ++ F+ D A  LSL  +  V L    
Sbjct: 342 QSAKSIRELYKDRKITAIFQPH--------LYTRTRDFYQDFANSLSL--LDEVILCDIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L   +        + +   ++S   D DV++V  
Sbjct: 392 PAREKPIEGVTSKLIYDNLKPGVEKSMIH-KEDVLDLVKS--RDFDVLLVLG 440


>gi|254387287|ref|ZP_05002546.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
 gi|194346091|gb|EDX27057.1| UDP-N-acetylmuramate-L-alanine ligase [Streptomyces sp. Mg1]
          Length = 465

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 74/423 (17%), Positives = 143/423 (33%), Gaps = 46/423 (10%)

Query: 45  AIK--GPHYD-GHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGAL 95
           A++  G     GH      +   +  VVV      +   +A    L IPV    D L  L
Sbjct: 50  ALRAHGATVHIGH--AAAHLAADSTCVVVSSAIRSDNPELARAAELGIPVVHRSDALAGL 107

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
                          IA+ G+ GKTTT  ML ++LS++    +     +           
Sbjct: 108 MD---------GLRPIAVAGTHGKTTTTSMLAVSLSALGLDPSYAIGGDLD---APGSNA 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              + D  + E   S         H   P +A+I      H +N++ +EEI  +      
Sbjct: 156 HHGEGDIFVAEADES-----DRSFHKYTPQVAIILNAELDHHANYASMEEIYESFETFVA 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
            +   GT+ + +  +    + A+        + ++G+ + AD ++ K       S + V 
Sbjct: 211 KVVPGGTLVVAHGQAGAAEIAARVAGNEGLRVVTYGEEEAADVRITKITPRGLTSEVTVV 270

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + G+ +       G H A N +  L     L         AL  +   + R +       
Sbjct: 271 IDGRMLTFTVSVPGRHYAHNAVAALAAGVALGIPAHNLASALGKYTGVKRRLQ----LKG 326

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + +SY  +P  M A +  +        G    ++     +   +Q    ++ + 
Sbjct: 327 EAAGVQVIDSYAHHPTEMSADLEAI----RGAAGDSRILVVFQPHLFSRTQELGKEMGQA 382

Query: 396 LSLYNISH---VWLSGFHVL-------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           L+L + +    ++ +    +        +  A      V      D +   I      GD
Sbjct: 383 LALADAALVLDIYPAREDPIPGITSEIIIASARAAGADVTAEHEKDAVADVIAGMAKPGD 442

Query: 446 VVV 448
           +V+
Sbjct: 443 LVL 445


>gi|119478638|ref|ZP_01618541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
 gi|119448415|gb|EAW29666.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2143]
          Length = 453

 Score = 53.7 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 111/348 (31%), Gaps = 30/348 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I AITGS GKTT   ++ +             +   +IGVP     +  + D
Sbjct: 103 FCEEAKAPIAAITGSNGKTTVTTLVGLMAE----RCGRSAAVGGNIGVPALDLLLEPEPD 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L        A +  I+  H+  +  +     AK  IF   +K  
Sbjct: 159 MYVLELSSFQLERADVLG----FEAATVLNISADHMDRYPDLSTYRRAKYRIFNHCKKKI 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          A  +      + SFG  +    +       +   ++  Q +    
Sbjct: 215 INRADP--------LAAPYCGEDLDVLSFGLDRP-GLKGFGLIDVNGVEYLAYQTEPLMA 265

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  +N L  L +   +  ++    + LS F   + R    +          
Sbjct: 266 VGALKMVGRHNIENALAALALGFAMGLELSLMTEVLSEFSGLDHRC---QLVGEYQQIKY 322

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  +  AAI  L+ ++       I + G   +  + S      + +  +    
Sbjct: 323 YNDSKGTNVGAAIAAIEGLAAVAKK----VILIAGGEGKGADFSPLL--PVLKQFARA-- 374

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + + G     L       I    + +M           V GD V++
Sbjct: 375 --IVVIGEASEQLLKLCGDEIIALRASSMQQAVEKAAMLAVSGDAVLL 420


>gi|323343869|ref|ZP_08084096.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
 gi|323095688|gb|EFZ38262.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella oralis ATCC
           33269]
          Length = 458

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 102/349 (29%), Gaps = 27/349 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL      +   G+ GKTTT  M    +              +      T   +    DF
Sbjct: 107 RLTRTHKGLCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKN--YGTNYILSDTSDF 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E       E     H +RP ++VIT+  P HL  +   E    +       ++K G 
Sbjct: 165 VVIEAD-----EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTTLIQKGGA 219

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + ++        L+ K +      +Y +   +          +  E ++  +       +
Sbjct: 220 LIIH------RDLEMKQNVQEGVKVYDYSLHEGDFHAENIVIENGEITFDFISPIENIKD 273

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +           N +  + +  +     +     +  +H  E R           F +  
Sbjct: 274 IRLGQPIPINIVNGIAAMAMAQLNGCTSEELRYGMKTYHGVERRFDFKIKTDKLVFLSDY 333

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                    S K+   +          +              ++ F+ + AE LS   + 
Sbjct: 334 AHHPKEIYQSAKSIRELYKDRKITAIFQPHLF--------TRTRDFYKEFAEALSQ--LD 383

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVK 450
            V L   +    +  +         + +       +S +   DV+ +VK
Sbjct: 384 EVILCDIYPAR-EQPISGVTSKLIYDNLKEGVE--KSMIHKEDVIPLVK 429


>gi|332704503|ref|ZP_08424591.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554652|gb|EGJ51696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 435

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 119/381 (31%), Gaps = 70/381 (18%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+A+TG+ GKTTT  +    L    K          +IG PL+   +
Sbjct: 105 ELASWF---VSEPILAVTGTNGKTTTVSLCGHILRESGKRVFVG----GNIGTPLSEYLL 157

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D  + E+    L          +PH+ V+   +  HL     +EE   AK ++F 
Sbjct: 158 GGERADILVLEVSSFQL----QNCRTFKPHVGVLLNFSANHLDYHESMEEYLEAKLKLFA 213

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +          +  + L+A+      +  Y                   E + +   
Sbjct: 214 RQTEQD--LAIAPLNMKDELEARGFTKAKRVYYVPSNRF-------------EGARLLGV 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
               +ME                            D A  A+  F P   R       + 
Sbjct: 259 HNKANME---------------AAWLACRAFGVSDDQARAAVMSFKPLSHRI---EPVIE 300

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G    +D+S      +M AAI+               + G + + G+++      L  +
Sbjct: 301 TGGVLFVDDSKATTIDAMAAAITAFD-------RPVRLLAGGVWKGGDVAA-----LVPL 348

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS 452
           L    +  V L G      + A    + + +  T++     + +    GDV+++    +S
Sbjct: 349 LKDR-VKSVGLFGKAREVFEGAWQGHVPLFWEPTLEPAVKRLYAEAQPGDVILLSPATAS 407

Query: 453 ---------NSCGFYRLINLL 464
                        F R+   L
Sbjct: 408 FDLYKDYKARGDDFQRIARGL 428


>gi|238893068|ref|YP_002917802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238545384|dbj|BAH61735.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 438

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 70/376 (18%), Positives = 128/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDTDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTFSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            D       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCISFGV------------DVGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +         
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVQEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLQL-----DGTLYLLLG-----GDGKSADFTPLKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELAELRPEV--AVQTETMEQAMRQIAPLVKAGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGEMFARLAKEL 437


>gi|153947798|ref|YP_001402346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959293|gb|ABS46754.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 438

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 127/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +   +         +IGVP     +  D  
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWSV----GVGGNIGVPALTL-LKQDNQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 154 LTVLELSSFQL----ETTHSLRASAATILNVTEDHTDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++KAL+ F     R    +  L +    
Sbjct: 258 NTREMKLSGRHNYTNALAALALADAVGIPRASSLKALTTFSGLPHRF---QLVLERHGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  V+  G     L    P    +   ETM      +   ++ GD V++    +S     
Sbjct: 365 I-KVYCFGRDGGQLAALRPDVSQLT--ETMAQAMALVAKVVLPGDRVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEHRGNEFARLAEEL 437


>gi|269137993|ref|YP_003294693.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|267983653|gb|ACY83482.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Edwardsiella tarda
           EIB202]
 gi|304558040|gb|ADM40704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Edwardsiella tarda
           FL6-60]
          Length = 438

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 115/373 (30%), Gaps = 50/373 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGVPALSL-LKHECR 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  ++  H++ +  G+++  +AK  I+E     
Sbjct: 154 LYVLELSSFQL----ETTSSLRAAAATILNVSEDHMNRYPLGLQQYRAAKLRIYENARTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+         +  +  LR   +    +         +
Sbjct: 210 VVNADDALTMPIHGADTRCVSFGVDVGDYHLNRQQGEIWLRVRGEKILNTKEMQLTGMHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +     + ++ T                      ++  L      
Sbjct: 270 YTNALAALALADAVGLPRASSLRALTTFRGLAHR---------------FQLVLEHSGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L     H +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALKGL-----HLDGTLHLLLG-----GDGKDADFTPLLPYLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P        +T++     +      GD+V++    +S     
Sbjct: 365 I-RLYCFGRDAEPLMRLRPEVSR--RFDTLEQAIRALAPLTRGGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLI 461
                   F RL 
Sbjct: 422 NFEQRGDEFARLA 434


>gi|304392258|ref|ZP_07374200.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
 gi|303296487|gb|EFL90845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ahrensia sp.
           R2A130]
          Length = 463

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/397 (15%), Positives = 120/397 (30%), Gaps = 54/397 (13%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV     ++A A R    A +IAITG+ GK+TT  ++   L    +     G+    
Sbjct: 96  IVGDVELFFRQMAKAGR---PAPVIAITGTNGKSTTTALIAHVLKQAGRDVQMGGNI-GR 151

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             + L            + E+    +     L   + PH+ ++  + P HL     +E  
Sbjct: 152 AVLDLDPLSETPANQVYVVEISSYQID----LAPSIAPHVGLLLNLTPDHLERHGTLENY 207

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
           A  K  +    +    + +   D       +   +     + +  K   AD      K  
Sbjct: 208 AGIKERLVAASD----LAVVGLDDEHCRAISGRISASRTPLVTISKDGAADVFFADGKLI 263

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   +       S+   H+G     A      +G+ S        +   L+        
Sbjct: 264 VDGDMVIDLSGVGSLRGQHNGQNAAAAFAACRAVGLSSEEIQSGFNSFPGLA-------- 315

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R   A + G    +++S   N  ++  A+S   ++     G     L     +G L+ 
Sbjct: 316 -HRMEQAGHVGDVLFVNDSKATNAEAVAPALSSFPKVHWIAGG-----LAKDGGIGSLAP 369

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV---- 442
            F            I+  +  G    +    LP +I    + ++                
Sbjct: 370 QFDR----------IAKAYFIGEAAGSFASQLPDTIPYEIAGSLKQAVNHAARDASLAAG 419

Query: 443 --DGDVVVVK---SS---------NSCGFYRLINLLL 465
                VV++    +S             F   +  L 
Sbjct: 420 KGAEAVVLLSPAAASFDQFPNFEKRGEAFKDAVAALE 456


>gi|269960901|ref|ZP_06175271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
 gi|269834341|gb|EEZ88430.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio harveyi 1DA3]
          Length = 452

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 115/371 (30%), Gaps = 37/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQSLQDVIERGC-------WTEKQFSGVDGDWQAHKLVVDGSKFEVSLQGE--KVGVVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGEELGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVW 405
                   +++    +  GE R +AVL         S +    + +     SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVL------EPRSATMKRGVHKNTLAASLHSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           L         V  + D   +         MD     I      GD ++V  SN  GF   
Sbjct: 385 LFQPDNIDWSVQEIADQCKQ--PAFVDAEMDSFVAKIVEQAQPGDQILV-MSNG-GFGGI 440

Query: 458 -YRLINLLLEE 467
             +L+  L ++
Sbjct: 441 HGKLLEQLKQK 451


>gi|260910912|ref|ZP_05917554.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
 gi|260634969|gb|EEX53017.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella sp. oral taxon
           472 str. F0295]
          Length = 463

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 105/378 (27%), Gaps = 45/378 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +   G+  KTTT  M    +              +      T   +    ++ + E 
Sbjct: 112 LKGLCFAGTHAKTTTSCMCAHIMHQSHPDCNAFLGGISKN--YGTNYILSPQSEYVVIEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E     H +RP ++VIT+  P HL  +   E    +             I    
Sbjct: 170 D-----EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYMESFRHYT------TLIQEGG 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + L  K +      +Y +  ++               ++  V        V    
Sbjct: 219 ALIIKKGLALKPNVKPGVKVYQYSLNEGDFHAENVKIDNGNITFDFVSPIESVKNVTLGH 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +N +  + +  +   + +     +  +H  + R        N  F +      N
Sbjct: 279 PVPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDFKIKTPNLVFLSDYAHHPN 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               S ++   +          +          +   ++ F+ + A+ LSL N   V L 
Sbjct: 339 EILQSARSIRQLYKDRKITAVFQPH--------LYTRTRDFYKEFAKALSLLN--EVILC 388

Query: 408 -----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                      G     + D L + +      + + +    +    D DV+V       G
Sbjct: 389 DIYPAREQPIKGVSSKLIYDNLEKGVEKSMI-SKEDVLKLARE--RDFDVLVF---LGAG 442

Query: 457 -FY----RLINLLLEEFP 469
                  ++  +L E+  
Sbjct: 443 DLDSYAPQVAKILEEKAK 460


>gi|187479470|ref|YP_787495.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella avium 197N]
 gi|115424057|emb|CAJ50610.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella avium 197N]
          Length = 456

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 56/383 (14%), Positives = 99/383 (25%), Gaps = 37/383 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L      +S   ++A+ G+ GKTTT  ML   L         +             AR
Sbjct: 93  QWLGDNILPQSH--VLAVAGTHGKTTTSSMLAWILEEAGLKPNFLIGGVAPD--LKVSAR 148

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + E                  RP  A++  +   H   F  +  I +    +
Sbjct: 149 YQFGSRPFVIEADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHL 208

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G + L       E + A+          + G  +               ++  
Sbjct: 209 VRTIPSEGCVVLPTRSEALERVLARGCWSRTVRFGAGGAWQAGPADEL-------GAFTV 261

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           ++       V     G H   N L  L     +       I AL  F   + R +     
Sbjct: 262 LRDGRDQGMVRWSLGGEHNRMNALAALAAAENIGIPASDGIAALCRFGGVKRRMELRGTI 321

Query: 334 LN---QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                   F     +     A ++  +     ++          LG M      +     
Sbjct: 322 NGVKVYDDFAHHPTAIATTIAGLRRQVGPARILAVLEPRSNTMKLGTM------AARLPQ 375

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVD 443
            LA          V+  G                          + ++ L   +  +   
Sbjct: 376 ALA------GADQVFCFGAQEGKHALGWNPTEVLSPLGERASSHDDLNALVNAVARAAAP 429

Query: 444 GDVVVVKSSNSCGFYRLINLLLE 466
           GD ++V  SN  GF  + + LL 
Sbjct: 430 GDHILV-MSNG-GFGGVHDKLLA 450


>gi|168039117|ref|XP_001772045.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880192|dbj|BAE45867.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Physcomitrella
           patens]
 gi|162676646|gb|EDQ63126.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 521

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 106/350 (30%), Gaps = 22/350 (6%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF---- 162
              + A+TG+ GK+T     +  L +        G+    +   +         D     
Sbjct: 158 NIKVAAVTGTNGKSTVTTFTSQILRNAGVRTFVGGNLGTPLSDGVLQCLAFPAEDPPFSV 217

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    L     L     P  AVI  + P HL     +E   S K  +F  +E +  
Sbjct: 218 AVVEVSSYQL----ELPGSFHPKAAVILNLTPDHLERHKSMEAYGSIKCRVFSRMEASDV 273

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                     ++L  +  A+                QL K  + +        ++ +   
Sbjct: 274 ----AIIPQSDVLLRRLAAMSGSQATRAWMGGLPGVQLDKDARRAIVVVPTTGVEARLYL 329

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +G H A N      +   L   + +     ++ H K    +      +      +
Sbjct: 330 SSLQAVGTHNAHNAGTAALLALSLDVGLQSEDIQAAIPHLKAPPHRMEIVHQDDQGVVWV 389

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S          I      + + +LG   ++G  S      +       +  
Sbjct: 390 NDSKATNVDSTSVG------IRSIVGKKAVVLLGGQAKVGVGSGGLGFGVLVESLQSH-R 442

Query: 403 HVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            V L G   LA++  L  +   I   Y+E          S    GD V++
Sbjct: 443 AVVLFGASGLAIEQELRHAGLSITCTYTELFADAVQLAGSLAQPGDAVLL 492


>gi|300715069|ref|YP_003739872.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
 gi|299060905|emb|CAX58012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia billingiae Eb661]
          Length = 451

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/370 (16%), Positives = 118/370 (31%), Gaps = 38/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M    L +       +       GVP             F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMAAWILQACGLEPGFVIG-----GVPGNFDVSATLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I +
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQRQFHHLVRIVPGQGKILM 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D   + + A       +T+   G  +         +      W       +  EV  
Sbjct: 220 PDHDVNIKQVMAMGCWSEQETVGDSGHWQAKKLTPDASR------WEVWLDGERVAEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N +M +     +    + A  AL+ F     R +       +     + + 
Sbjct: 274 ALVGEHNMHNGMMAIAAARHVGIKPEDAGLALNDFINARRRLE----LRGEANGVKVYDD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNIS 402
           +  +P ++   ++ ++ +     G    +      +   S +  + +++     +L    
Sbjct: 330 FAHHPTAI---LATMTALRSKVGGTARIL----AVLEPRSNTMKMGISKDDLAPALARAD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + +A  +    H+S  +D L   I      GD ++V  SN  GF
Sbjct: 383 EVFLLQPHHIPWQVSEVAEACSQ--PAHWSPDVDVLVEMIVKVAQPGDTILV-MSNG-GF 438

Query: 458 YRLINLLLEE 467
             +   LL+ 
Sbjct: 439 GGIHQKLLDR 448


>gi|294793907|ref|ZP_06759044.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
 gi|294455477|gb|EFG23849.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           3_1_44]
          Length = 456

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 93/324 (28%), Gaps = 39/324 (12%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                F + EL    L          RP  A+I  I P HL+    +E   +AK  IFE 
Sbjct: 154 MPADGFLVAELSSYQL----ETIKHFRPIGAIILNITPDHLARHKTMENYIAAKERIFEN 209

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              T  + LN DD     +             S     +    +      ++      + 
Sbjct: 210 QLSTDYLVLNIDDPVVADM--------EHRAPSHILKISQKKAVENGAYYADGQCYIAKD 261

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    I    + N+   L ++++  A          +     G   R       
Sbjct: 262 GVAKFVIADEDIHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTI 321

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T  ++S   N  S+  A+    Q      G            G    +   D  +++
Sbjct: 322 DGITFYNDSKATNVDSVVKALESFDQQVILLAG------------GHDKMTPLEDFMQLV 369

Query: 397 SLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
              +   V   G      + A   +    ++ + +M             GD+V++    S
Sbjct: 370 KE-HTKAVIFMGEAADRFEMAAKEAGVKPIYRALSMKEAVEQGYKLAETGDIVLLSPACS 428

Query: 452 S---------NSCGFYRLINLLLE 466
           S             F R +++L E
Sbjct: 429 SFDWYSCFEERGDDFKRCVHMLQE 452


>gi|258625793|ref|ZP_05720672.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
 gi|258582031|gb|EEW06901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM603]
          Length = 451

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 120/369 (32%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  M+          Y         +G     AR+   + F +     
Sbjct: 105 VIAVSGTHGKTTTSSMVA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +      +     G+ +       +        +  +    +  +V    +
Sbjct: 223 DEALADVFKRGCWSETEFSGEQGEWQA------EKITADGSQFHVLLHGERVGQVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +    + A +A           KR      +     + + +  
Sbjct: 277 GDHNVSNALMAIAAARHVGVAPELACEA----LGLFVNTKRRLELKGEINGVAVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P +++  +++    +  G+ + IAVL       ++G   ++         SL++   V+
Sbjct: 333 HPTAIE--LTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETL------AASLHSADTVY 384

Query: 406 LSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L    ++    + + +        S  MD     I      GD ++V  SN  GF     
Sbjct: 385 LYQPSNIPWSVEEVAKQCAQPAQVSANMDEFVAMIAKEAKVGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L+  L ++
Sbjct: 443 KLMAALQQK 451


>gi|227326193|ref|ZP_03830217.1| udp-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 461

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 119/380 (31%), Gaps = 41/380 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+T  L         +       GVP          D  F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEDCGYQPGFVIG-----GVPGNFTVSARLGDSPFMVLEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   V+  +   H   F  ++ I      +   +  +G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D   + +            +S  +    +   R  K  ++ S  +V L  + +  VH
Sbjct: 220 PTNDLNLKQVM-------GMGCWSEQELVGEEGTWRAQKVSTDASQYQVYLNKELVGEVH 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +      +    L  ++           A           +R      +   T+ D+ 
Sbjct: 273 WKLVGEHNMH--NGLMAIAAAHHVGVLPADACRALGGFINARRRLELRGTEHGVTVYDDF 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
             A+  +   A     +    G  R +AVL    +  ++G         L          
Sbjct: 331 --AHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------AD 382

Query: 403 HVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            V+L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  
Sbjct: 383 EVFLFQPAHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV-MSNG-GFSN 440

Query: 460 LINLLL-------EEFPAIQ 472
           + N LL       ++  A+Q
Sbjct: 441 IHNKLLDGLKNKAQKAKAVQ 460


>gi|163738713|ref|ZP_02146127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
 gi|161388041|gb|EDQ12396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phaeobacter
           gallaeciensis BS107]
          Length = 465

 Score = 53.7 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 119/405 (29%), Gaps = 45/405 (11%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK-- 107
           + GA      +V +  +  +     PV            +D+      +A     R    
Sbjct: 60  KAGAFDDIASLVVSPGIPHLYPKPNPVIHAALVAGVPVDNDIGLFFRSVATRGWERFDQA 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             I+A+TGS GK+TT  +L   L    +          +IG  +     P      + EL
Sbjct: 120 PRIVAVTGSNGKSTTVALLHHILQEAGR----ESQLAGNIGRGVLDIDPPGSGGIVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P +AV T ++P HL   +G+    +AK  +F        I    
Sbjct: 176 SSYQTDLARALT----PDVAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAIIGVD 231

Query: 228 DDSFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +D        L   +    +  I +  K     +Q+   K    +     Q     +  +
Sbjct: 232 EDEGLYLAGQLSEAASDDRVIRISASQKLTGLGWQVFARKGFLSEYRKGRQAASIDLRQM 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN          L         AL+ +     R    +          +++
Sbjct: 292 QGLPGAHNHQNACAAYAAARALGLAPRLIEDALASYPGLPHRS---QTIATHAGVRYVND 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S   A+S    I     G      G +  +   +               +   
Sbjct: 349 SKATNLDSAVKALSAFDNIRWICGGLEKD--GGLEALRGQT-------------GKVRKA 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ G        A+   +      TM        +    GD V++
Sbjct: 394 YVIGREAAGF--AMQLDVEAEVCITMAEAVARASAEAETGDTVLL 436


>gi|149190575|ref|ZP_01868844.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
 gi|148835573|gb|EDL52541.1| UDP-N-acetylmuramate-alanine ligase [Vibrio shilonii AK1]
          Length = 449

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 109/361 (30%), Gaps = 23/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML+         Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLS--WILEDCGYQPGFLVGGVLGNFGQSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEVIKRQFHHLVRTVPGNGRILAPRK 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +    +      K   + S  EV L G  +  V    
Sbjct: 223 DKALGDVLGRGC-------WSEVEHTGENADWHANKLKRDGSHFEVYLHGSKVGEV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 ELVGDHNVDNALMAIAGARHVGVTPDLACEALGKFINTKRRLELKGEVNQVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +      +  G++  +         + +  H +     SL     V+L  
Sbjct: 334 -----PTAIELTLGGLRNKVGKQRILAVLEPRSATMKRGVHKETLAQ-SLTQADAVFLFQ 387

Query: 409 FH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +    + +  S       S+++D L   I      GD ++V  SN  GF  +   LL
Sbjct: 388 PDNIDWSVEEIAHSCSQPATVSDSIDELVQAIVEQAQPGDQILV-MSNG-GFGGIHQKLL 445

Query: 466 E 466
           E
Sbjct: 446 E 446


>gi|116747993|ref|YP_844680.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697057|gb|ABK16245.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 477

 Score = 53.3 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/378 (13%), Positives = 107/378 (28%), Gaps = 38/378 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             +A       K+ ++A  G+ GK+TT  +L+     + +       +          + 
Sbjct: 100 QAIAEFFLCAHKSMVVA--GTHGKSTTSSLLS---WVLSRGGLDPSVFVGAFIKNWNSSY 154

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 F + E                   P I ++T++   H   F+  E +  A    
Sbjct: 155 RIGRGPFMVIEGDEYDTAFFDKGPKFLHYSPWIGIVTSVEFDHADIFTDFEAVRRAFRSF 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              ++  G + LN DD+    L  +        + ++G S+ AD+++        +    
Sbjct: 215 ARLIQPDGHLILNADDANCLALAKE----SRGRVTTYGWSRTADWRIVDMIHTDGRIRFT 270

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +                          + +   A +D    A+          KR +  
Sbjct: 271 YENPLSRGTESILTRMPGRHNVSNSMAVMAAASLAGLD--RNAVQDGLLTFEGVKRRQDI 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           L +    L+ + +  +P +++  I  L    P                   + S    + 
Sbjct: 329 LGEIGGILVMDDFAHHPTAVRETIQALKDFYPRRRIFCAF--------EPRTNSSRRSVF 380

Query: 394 EVLSLYNISHVWLS------GFHV----------LALKDALPRSIHVHYSETMDGLFLFI 437
           +          +        G               + D   R    H   + + L  F+
Sbjct: 381 QQAYTTAFDDAFCICIKHPPGMDAIPREERLDVQKLVADIAERGKECHGFASAEDLIGFL 440

Query: 438 QSSLVDGDVVVVKSSNSC 455
                 GD+V V  SN  
Sbjct: 441 VDHCASGDLV-VCMSNGS 457


>gi|254449012|ref|ZP_05062466.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
 gi|198261406|gb|EDY85697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [gamma
           proteobacterium HTCC5015]
          Length = 447

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 117/370 (31%), Gaps = 48/370 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +A +IAITGS GK+T  E++     S   T A       ++G P     +   VD  + E
Sbjct: 109 QAPLIAITGSNGKSTVTELVGSMAQSAGMTVAIG----GNLGTPALEI-LAPAVDLYVLE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +RP  A +  I+  H+  +S IE  A+AKA      E       +
Sbjct: 164 LSSFQL----ETVQSLRPKAATVLNISEDHMDRYSSIEAYAAAKAAAISHSEVAVINRQD 219

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +       +       +   +G            ++ +   W+  Q +         
Sbjct: 220 KRVAAMLSDGERVTFGSDSSEAGYGL-----------ERLAGTVWLTAQGERLIEVSDLK 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  L +        + ++ AL  F     R         +     I++S 
Sbjct: 269 ICGEHNWLNALAALALADAAGIAREASLAALKEFAGLPHRT---EWVAERNGVIYINDSK 325

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +  AA++   Q         + + G + +  + +        +         V L
Sbjct: 326 ATNVGATAAAVTGFDQ-------PLVLIAGGVGKGQDFAP------LKTSLKARAKAVVL 372

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G     +  AL   +  +   +M             GDVV++    +S           
Sbjct: 373 LGHDAELIGQALGDEVAQYRVASMSEAVSRATELAECGDVVLLSPACASFDQYQGFEARG 432

Query: 455 CGFYRLINLL 464
             F R +  L
Sbjct: 433 EDFARCVAQL 442


>gi|27262262|gb|AAN87412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Heliobacillus
           mobilis]
          Length = 199

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 51/187 (27%), Gaps = 27/187 (14%)

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+   L  ++           A       +    R            I++S   NP + 
Sbjct: 25  HNVENALAALAGTIGLGIDPAVAARAARNFQPVEHRMEPVGMVNGVEYINDSKGTNPDAS 84

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             AI    +      G            G+   S   +LA ++    +  V L G     
Sbjct: 85  IKAIESYDKPIVLIAG------------GKNKGSDFRELASLIKER-VKAVVLVGQAAPI 131

Query: 414 LKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYR 459
           L++AL  S        +T              GDVV++    +S             F  
Sbjct: 132 LEEALRSSGYDQFTRVQTFAETVAEASKLAQPGDVVLLSPACASLDMFPNYEERGRVFKE 191

Query: 460 LINLLLE 466
           L+  L  
Sbjct: 192 LVRQLQA 198


>gi|126726622|ref|ZP_01742462.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703951|gb|EBA03044.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2150]
          Length = 463

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/392 (17%), Positives = 120/392 (30%), Gaps = 30/392 (7%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V+ +     +    +    G+  V  A   LA   RL+S    IAI G+ GKTTT  +
Sbjct: 73  VVVISSAIKPGNPELDTARARGLPVVRRA-EMLAELMRLKSN---IAIAGTHGKTTTTTL 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +      +          N  I             ++ + E   S         + +   
Sbjct: 129 VAEL---LVGGGMDPTVINGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNRLPAT 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I P H+ ++   + +    A+    +   G      D    + L  +      +
Sbjct: 181 IAVVTNIDPEHMEHWGSFDALRQGFADFVGNIPFYGLAVCCTDHPEVQALVGRI---RDR 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ---GKSMEVVHHGIGYHMAQNMLMTLGI 302
            I +FG +  AD +    +  + ++  ++QL+       +      G H   N L  + +
Sbjct: 238 RITTFGVNAQADVRALNLRYENGRALFDIQLKAEGQMIEDCSLPMPGEHNVTNALAAVAV 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAI 357
              L         AL  F     R  R                    +     A      
Sbjct: 298 ARHLGMKKAEIRTALENFGGVNRRFTRVGEVGGAIVIDDYAHHPVEIAAALRAARQSTTG 357

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            V++   PH   R   +  D C     +    I          I      G +   L   
Sbjct: 358 RVIAVHQPHRFSRLHDLFDDFCACFNDADVVAISDVYAAGEAPIE-----GANRDDLVAG 412

Query: 418 LPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
           L    H H    +  + L   I++    GD+V
Sbjct: 413 LVAHGHRHALALQNEEALLDLIKTEAKPGDMV 444


>gi|320161737|ref|YP_004174962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
 gi|319995591|dbj|BAJ64362.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anaerolinea
           thermophila UNI-1]
          Length = 460

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 114/388 (29%), Gaps = 49/388 (12%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMP 157
           +          +I ITGS GKTTT  ++    S              +IGVP +      
Sbjct: 101 SQIFMEEVPCRVIGITGSAGKTTTTTLVGRMASRAVVAPQ-KAWVGGNIGVPLIDRLDEI 159

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D  + EL    L  I        P +A +  I P HL     +E   +AKA I E  
Sbjct: 160 QPADVVVLELSSFQLQWITRS-----PQVAAVLNITPNHLDRHGTMEAYTAAKARILEFQ 214

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
             T    L  +D+    L+ K        + SFG +  A+    K               
Sbjct: 215 SATDIAVLGREDAGAWGLREKVRGD----LISFGLNHPAEG---KGTFYDNGWLWYQGEM 267

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +        I      N+L  L   +I  A        L       G   R        
Sbjct: 268 VEEALFERGKIALRGTHNLLNVLAACAIGIAAGFPPEALLDGVQGFGGVPHRLELVREWR 327

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                ++S    P    AAI    +         + +LG     G   +     LA+++ 
Sbjct: 328 GVRWYNDSIATAPERTIAAIRSFEE-------PLVLMLG-----GRDKKLPWDSLADLIH 375

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKS 451
              + HV + G     +  A+               +T+        +   +GDVV+   
Sbjct: 376 ER-VDHVVVFGEAAEKIAHAIGEVRPGKRPFTLTLCKTVQEAVQAAAAVAEEGDVVLF-- 432

Query: 452 S--------------NSCGFYRLINLLL 465
           S                  F + +  LL
Sbjct: 433 SPGGTSYDEFRDFEERGERFRKWVQELL 460


>gi|225389931|ref|ZP_03759655.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
           DSM 15981]
 gi|225044011|gb|EEG54257.1| hypothetical protein CLOSTASPAR_03681 [Clostridium asparagiforme
           DSM 15981]
          Length = 452

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 77/288 (26%), Gaps = 25/288 (8%)

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E+    L          RP ++ I  I P HL+    +E     K  I     +   +
Sbjct: 161 VAEVSSFQL----ETILDFRPEVSAILNITPDHLNRHKTMENYIQIKEAITLNQTEEDAV 216

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            LNYDD                  +S  +     F +        +S  E  +       
Sbjct: 217 VLNYDDPVLREFGESGELKPRVIWFSSREKLKDGFCMNGDTIVYCKSGRETPVINVHSMH 276

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +     Y            + +    +   I+             R      +      +
Sbjct: 277 LLGRHNYENVMAAAAMSMQMGVPLEKITQVIRDFR------PVEHRIEFVRERTGVKYYN 330

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   NP +   A+  +        G  I + G     G    S + D         + +
Sbjct: 331 DSKGTNPDAAIQALRAM-------PGPTILIAG-----GYDKNSEYDDWVAEF-EGKVRY 377

Query: 404 VWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + L G     +     +     + Y+E +             GD V++
Sbjct: 378 LILIGQTRDKIAACAKKHGFTEIMYAEDLPEAVQVSAVYADTGDYVLL 425


>gi|260599417|ref|YP_003211988.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
 gi|260218594|emb|CBA33861.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Cronobacter turicensis z3032]
          Length = 459

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/377 (16%), Positives = 119/377 (31%), Gaps = 38/377 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIWPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A          +S  +      + +  K  ++ S  EV L G+ +  V   
Sbjct: 222 NDINLKQVLA-------MGCWSEQEQLGEQGRWQAKKLTNDASKWEVWLDGECVGQVEWQ 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +         +     +             +         +R      +     + + + 
Sbjct: 275 LVGEHNMQNGLAAIAAARHVGVTPADA---AQALGSFVNARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGVCKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY- 458
           +L   H     V  + DA  +    H+S  +D L   I  +   GD ++V  SN  GF  
Sbjct: 385 FLFQPHHIPWQVAEVADACIQ--PAHWSADIDTLVEMIVKTAQPGDHILV-MSNG-GFGG 440

Query: 459 ---RLINLLLEEFPAIQ 472
              +L++ L ++    Q
Sbjct: 441 IHQKLLDALAKKAEKAQ 457


>gi|188026372|ref|ZP_02961838.2| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
 gi|188020136|gb|EDU58176.1| hypothetical protein PROSTU_03908 [Providencia stuartii ATCC 25827]
          Length = 447

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/373 (16%), Positives = 112/373 (30%), Gaps = 34/373 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 93  VLAVAGTHGKTTTAGMLA---WILEDCGYKPGFLIGGVPGNFEVSAQLGESPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  +E I      +   +  +G IF   
Sbjct: 150 YDCAFFDKRSKFVHYSPRTLVLNNLEFDHADIFENLEAIQKQFHHLVRIVPASGKIF--- 206

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  LK              G+      +           +     Q +  EV    
Sbjct: 207 MPDSDNNLKQVMTMGCWSEQEFVGEHGEWQAKKLNHD---GSQFEVYYQQQRVGEVNWSQ 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  QN LM +     +      A  A      K    +R        +   + + + 
Sbjct: 264 VGNHNIQNALMAIAAAHHVGVPAKEACFA----LGKFINARRRLELRGVEYGVSVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A +  L      G  R +AVL    +  ++G         L           V
Sbjct: 320 HHPTAILATLEALRS-KVGGTSRILAVLEPRSNTMKLGVNKSDIAPALGR------ADEV 372

Query: 405 WLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
           +L    ++  +   +         +S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLFQPSNIPWMVTEIAEKCVQPARWSGDIDALAQMVIETAQPGDHILV-MSNG-GFGDIH 430

Query: 458 YRLINLLLEEFPA 470
            +L+  L  +   
Sbjct: 431 GKLLAGLKNKAET 443


>gi|16759121|ref|NP_454738.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29140671|ref|NP_804013.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213052851|ref|ZP_03345729.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213417202|ref|ZP_03350346.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213426157|ref|ZP_03358907.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213646588|ref|ZP_03376641.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|213859656|ref|ZP_03385360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289823736|ref|ZP_06543348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|30316091|sp|Q8Z9H0|MURD_SALTI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|25293608|pir||AC0518 UDP-N-acetylmuramoyl-L-alanine,D-glutamate ligase [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16501411|emb|CAD01283.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136295|gb|AAO67862.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 438

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 122/375 (32%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   I
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDRI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPHVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|238761555|ref|ZP_04622530.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
 gi|238700069|gb|EEP92811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia
           kristensenii ATCC 33638]
          Length = 444

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 126/377 (33%), Gaps = 46/377 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDV 160
               ++A ++AITGS GK+T   ++     +        G+       +   LA    + 
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQVGVGGNIGVPALTLLQQLASQKQEN 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEK 219
              + EL    L      T  +R   A +  +   H   +  G+++  +AK  ++E  + 
Sbjct: 159 QLVVLELSSFQL----ETTSSLRASAATLLNVTEDHTDRYPFGLQQYRAAKLRVYENAKV 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +          ++  + G+            D       +   + W+ V+ +  
Sbjct: 215 CVVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKV 262

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L  L +   +     +++ AL+ F     R    +  L +   
Sbjct: 263 LNTREMKLSGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRF---QLVLERNGV 319

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   
Sbjct: 320 RWINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGD 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
           +I  ++  G     L +  P    +   ETM+     +  SL   D+V++    +S    
Sbjct: 370 HI-KIYCFGRDGKQLAELRPEVSQLT--ETMEQAMALLAKSLAPRDMVLLSPACASLDQF 426

Query: 453 -----NSCGFYRLINLL 464
                    F RL   L
Sbjct: 427 RSFEQRGDEFARLAEEL 443


>gi|197124217|ref|YP_002136168.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp. K]
 gi|220918997|ref|YP_002494301.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|229486422|sp|B4UES2|MURC_ANASK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254763735|sp|B8J8E9|MURC_ANAD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196174066|gb|ACG75039.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter sp. K]
 gi|219956851|gb|ACL67235.1| UDP-N-acetylmuramate/alanine ligase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 458

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 126/404 (31%), Gaps = 50/404 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  AV++       +   V       IPV         +  LA   RL+     +AI GS
Sbjct: 73  ISSAVKR-------DNPEVLEARRRKIPVI----PRAEM--LAELMRLKYG---VAIAGS 116

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M    L+        +     +              D+ + E   S      
Sbjct: 117 HGKTTTTSMAAHLLAHAGLDPTAVVGGKVN---AFGSNAKLGKGDYMVVEADES-----D 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IA++T I P HL ++   + +     +    +   G   L  D    + + 
Sbjct: 169 GSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSIL 228

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQN 295
                  +    ++G+S  AD++    +        +  +            +G H A N
Sbjct: 229 PDVEKRAV----TYGESHQADYRAEAIELSGHAVRFDAFRRDEALGRFEVAMVGRHNALN 284

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L  + +   +        +AL  F   + R         +     + + Y  +PA +  
Sbjct: 285 ALAVIALGDEMGIPPLVTREALRSFQGVQRRFT----VRGEAAGVTVVDDYGHHPAEV-- 338

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH-- 410
                 Q +     RR+  L         ++    + A   +  ++   + ++ +G    
Sbjct: 339 --KATLQGAREAFKRRVVCLFQPHRY-TRTRDLMAEFATAFNDADVLLLTDIYAAGEEPI 395

Query: 411 ----VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
                  L DA+    H  V        L    +  +  GD+V+
Sbjct: 396 PGATAANLADAIRAWGHRDVTLVP-RAELARAARERVRPGDLVL 438


>gi|187479352|ref|YP_787377.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           avium 197N]
 gi|118595642|sp|Q2KVF5|MURD_BORA1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|115423939|emb|CAJ50491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bordetella avium
           197N]
          Length = 508

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 104/367 (28%), Gaps = 21/367 (5%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  LA A        ++A+TG+ GKTT   +    +       A      +   +   
Sbjct: 118 RALASLAEA--RAYHPRLLAVTGTNGKTTVTALTRQLI-EACGLSARAAGNISPAALASL 174

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  +  D    ++ L +S        TH ++   AV+  +   HL     ++  A AKA 
Sbjct: 175 MEALDQDALPDVWVLELSSF--QLETTHSLQADAAVVLNVTQDHLDWHGDMQAYAQAKAR 232

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +    +      +N DD     + A    +    + SFG+           +     +W+
Sbjct: 233 LL---KMARVAIVNRDDPLTLAMVA---DVNGLNVRSFGRDLPQRVGDMGLELGQGVAWL 286

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                    E V                    +    +       ++      +  R   
Sbjct: 287 VACEPSDFDEPVVRRKKDAPPPQRGEGRMSRLMPVDALRIRGVHNALNALAALQLARVLE 346

Query: 333 ALNQGFFTLIDESYN-ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE-------- 383
                    + +     + A+   +I  +  I+        A +  +  +G+        
Sbjct: 347 LGWGPMLRALRDYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEGLGQTVVLIAGG 406

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
             +             +   V L G    A+   L    + +  +  M            
Sbjct: 407 QGKGQDFSPLRSAVSRHARAVVLIGADGPAIGQVLESTGVALVVAADMREAVRRAAEIAQ 466

Query: 443 DGDVVVV 449
            G+ V++
Sbjct: 467 AGEAVLL 473


>gi|283783875|ref|YP_003363740.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
 gi|282947329|emb|CBG86874.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Citrobacter
           rodentium ICC168]
          Length = 438

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/376 (18%), Positives = 132/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +    +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAGRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T+ ++   A I  +   H+  +  G+++  +AK  ++E     
Sbjct: 154 LYVLELSSFQL----ETTYSLQAEAATILNVTEDHMDRYPFGLQQYRAAKLRVYENASVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADARCVSFGV------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG   +  + S      L   L+   
Sbjct: 315 WINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP-----LGRYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L  AL   I    ++TM+     I   +  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLA-ALRPEI-AEQTQTMEEAMRLIAPRVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDLFTRLAKEL 437


>gi|257870256|ref|ZP_05649909.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
 gi|257804420|gb|EEV33242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           gallinarum EG2]
          Length = 458

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  I EL    L  I      + P IAVIT I  AHL       E   AK  + + +   
Sbjct: 164 DRLIMELSSFQLMGIE----TLHPKIAVITNIYEAHLDYHGNRSEYVRAKWRLQQNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N++      L  ++ A          K      Q +       +  +  + +   
Sbjct: 220 DFLVINWNQPELVELSQQTKA----------KVIPFSTQQKVAGAYLFEEQLYFKDEAIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +  ++AL  F     R    +         
Sbjct: 270 PVSELGVPGSHNVENALAAIAVAKLEGIANEAIVQALHTFSGVPHRT---QYVDTIEGVR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+             ++ +L    + G            + SL +
Sbjct: 327 FFNDSKATNSLATEMALGGFQ-------KDQLILLAGGLDRGNSFDEL------IPSLQD 373

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + L G     L +A  ++    +  +E +             GD V++
Sbjct: 374 LKAIVLFGQTKEKLAEAARKAGIKTIKLTEDVTTAVPLAYQLSQPGDTVLL 424


>gi|229818496|ref|ZP_04448777.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
 gi|229784144|gb|EEP20258.1| hypothetical protein BIFANG_03805 [Bifidobacterium angulatum DSM
           20098]
          Length = 491

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 124/431 (28%), Gaps = 54/431 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHY-----DGHDFIL 58
           WT  D+                +  I+ D+R ++     F   KG  +     DG D   
Sbjct: 47  WTL-DVADLPGA-------NTPIPTITYDTRKVSQGTMLFV--KG-RFKPEFLDGID--- 92

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
               KG    V   D      ++ +    V+DV  A++ L+ +     + + T++ ITG+
Sbjct: 93  ---TKGLYAYVAEEDHSDRTHAIGV---IVNDVHKAMSLLSASFYGLPQHELTVVGITGT 146

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNN-----HIGVP-----------LTLARMPVDV 160
            GKTTT  +    L+   +    + S  N     H  +P             + R  VD 
Sbjct: 147 KGKTTTAFLAQAILNEYSQGRCALFSSVNLCLDGHTMLPSKLTTPESLDSFRMMRQAVDN 206

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLE 218
                 + +S         + +   +A    I+P H+S      +E+    K +I     
Sbjct: 207 GMKYLVMEVSSQAYKVNRVYGLTFDVAAFLNISPDHISPIEHPTLEDYLYCKRQIIANSR 266

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTI--YSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                             A       +     +  +    D         + +++     
Sbjct: 267 TLVLGSECRHIGLLREDAAVHQVPVSEFGVLDAMPRDGADDQTCAWPADGTHRAYRMRLD 326

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E      G    +N L  + I        D             GR  +YR     
Sbjct: 327 GNDLGEFSLDLDGDFNYKNALAAIAIAHAAGVPADCEALRALEHTKVPGRMMQYRDERT- 385

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+    Y  N  S+   +  +S        R   V G     G  +      + +  
Sbjct: 386 --STIAIVDYAHNYDSVVKLLDYVSTRYGERNPRITLVAGSA---GNKAIDRREGIVKAA 440

Query: 397 SLYNISHVWLS 407
                  V+ +
Sbjct: 441 QDRISRFVFTA 451


>gi|259907207|ref|YP_002647563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|224962829|emb|CAX54288.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477016|emb|CAY72908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia pyrifoliae DSM 12163]
          Length = 450

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 67/370 (18%), Positives = 116/370 (31%), Gaps = 38/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M    L +       +       GVP             F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMTAWILQACGYEPGFVIG-----GVPGNFEVSANLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   +  +  I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRAKFVHYCPRTLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    LK            + G++     +           W  +    +  EV  
Sbjct: 220 P---EHDANLKQMMSMGCWSEHEAVGENGCWQVKKLSPDASC---WEVMLDGERVAEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N +M +     +    + A +AL+ F     R +    +     +    + 
Sbjct: 274 SLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRGESNGIKVY----DD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A ++ L      G  R +AVL    +  +MG         L          
Sbjct: 330 FAHHPTAIHATLAALRG-KVGGTARILAVLEPRSNTMKMGISKDDLAPALGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I      GD ++V  SN  GF
Sbjct: 383 EVFLYQPHHIPWQVSEVADACIQ--PAHWSADIDTLVEAIAKVAHPGDTILV-MSNG-GF 438

Query: 458 YRLINLLLEE 467
             +   LL+ 
Sbjct: 439 GGIHQKLLDR 448


>gi|148242946|ref|YP_001228103.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. RCC307]
 gi|147851256|emb|CAK28750.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RCC307]
          Length = 458

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 99/374 (26%), Gaps = 44/374 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               I ITG+ GKTT   ++   L          G+                  +  + E
Sbjct: 110 GIPWIGITGTNGKTTVTSLVAHLLQQGGLDAPACGNIGASAAELALACLEGEKPERVVVE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    +         V+P I V TT+ P HL     +E   S KA +             
Sbjct: 170 LSSYQI----EAAPSVQPSIGVWTTLTPDHLDRHGTLERYRSIKAGLL-------QQSGR 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +  +       A   + ++  G+ K+                +  Q           
Sbjct: 219 QFLNADDRDLFAHAAEWPQALWVSGRDKDQFSAAITPHLWVSGGQLCNQTGPLFPCAALA 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H  QN+ +   +                 F     R             T  ++S 
Sbjct: 279 MPGAHNRQNLALATAVALECGLSPAQIEAGCRSFPGVPHR---LERIRELSGITYFNDSK 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +   A+  L       E   + + G   + GE        L +  +      V L
Sbjct: 336 ATNYDASLVALQSL-------ERPLVVLAGGRAKRGEPGAWL-EALGQKAAA-----VVL 382

Query: 407 SGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLV--DGDVVVV---KSS------ 452
            G      ++ L  + +   +   E +D      +      +   V++    +S      
Sbjct: 383 FGEAQSTFRELLGSAGYPGVIEQQEHLDQALPLARRLAEQLNCQAVLLSPACASFDQYRD 442

Query: 453 ---NSCGFYRLINL 463
                  F +L+  
Sbjct: 443 FEVRGDHFRQLVEA 456


>gi|307544553|ref|YP_003897032.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
 gi|307216577|emb|CBV41847.1| UDP-N-acetylmuramate--L-alanine ligase [Halomonas elongata DSM
           2581]
          Length = 507

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 139/409 (33%), Gaps = 46/409 (11%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            + A +VVV+T +  +   +         V  V  A   LA   R R     IA+ G+ G
Sbjct: 98  ARDADVVVVSTAVDETNPEIRWAQQHRIPV--VRRA-EMLAELMRFRHG---IAVAGTHG 151

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  +    L         +            +     + D+ + E   S    +   
Sbjct: 152 KTTTTSLTATLLGEGGLDPTFVIGGRL---TSAGVNARLGEGDYLVAEADESDASFLH-- 206

Query: 179 THLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H++ +    E +     E    L   G   L  DD+    L  
Sbjct: 207 ---LQPMVAIVTNIDADHMATYGGDFERLKGTFIEFLHNLPFYGLAVLCIDDANVRGLIE 263

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQN 295
           + +        ++G S++AD++L  + Q   +     +       +EV     G H A N
Sbjct: 264 RVNRQ----FVTYGFSEDADYRLENFVQHGGEVSFIARRPDGLAPLEVRLAMPGEHNALN 319

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            +  + + S    +    ++ L+ F     R + +    +       ++ + Y  +P  +
Sbjct: 320 AMAAIAVASDAGVEDAAILRGLASFAGVGRRFQVHGHFASPQGEGEVMLVDDYGHHPREV 379

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
           +  I  + +  P        V+         ++    D   VL+   +  + L       
Sbjct: 380 EMVIKAVREGWPER----RLVMLYQPHRYSRTRDLFEDFVRVLA--GVDTLLLLDVYSAG 433

Query: 408 -----GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
                G     L  ++ +   V   + +    L   +   L  GD +++
Sbjct: 434 ESPLPGADGRTLAGSIRQRGEVDPIFVQDKSELPELLAKVLRPGD-ILI 481


>gi|238898844|ref|YP_002924526.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259509775|sp|C4K735|MURC_HAMD5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229466604|gb|ACQ68378.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 493

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 76/413 (18%), Positives = 142/413 (34%), Gaps = 49/413 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV++ +      +       IPV         +  LA   R R     IAI G+
Sbjct: 77  KNASVVVVSSAIPEDNPEILAAHEARIPVIQ----RAEM--LAELMRFRHG---IAIAGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+    +            N  +              + I E   S      
Sbjct: 128 HGKTTTTAMVASIYAQAGLD---PTFVNGGLIKAAGKHAQLGSSRYLIVEADES-----D 179

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+  +    E +          L   G   L  DD     L
Sbjct: 180 ASFIHLQPLVAIVTNIEADHMDTYQGNFEHLKQTFINFLHNLPFYGRAILCIDDQVIRTL 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQ 294
             +      + I ++G S++AD ++  ++Q    S+    ++    +++  +  G H A 
Sbjct: 240 LPRI----ARHITTYGFSEDADIKITGYEQKEFTSYFMLERVHKPILKIQLNAPGRHNAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNAN 349
           N    + + +    + +  ++ALS F     R         +    Q    ++ + Y  +
Sbjct: 296 NAAAAVAVATEEGVEDEHILQALSFFQGTGRRFDCLGIFPLQPVNGQQGEVMLIDDYGHH 355

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWL 406
           P  + A I       P        V+         ++  + D   VLS  +I     ++ 
Sbjct: 356 PTEVAATIKAARVGWPTK----RLVMIFQPHRYSRTRDLYDDFVNVLSQVDILLMLEIYS 411

Query: 407 SGFHVL------ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +G   +      AL D++    H         + L   +   L + D+V+V+ 
Sbjct: 412 AGESPIPDISSCALCDSIRDFSHRMPILVTDHEKLPSLLAKQLKENDMVLVQG 464


>gi|170731878|ref|YP_001763825.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia MC0-3]
 gi|169815120|gb|ACA89703.1| UDP-N-acetylmuramyl-tripeptide synthetase [Burkholderia cenocepacia
           MC0-3]
          Length = 515

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 73/480 (15%), Positives = 142/480 (29%), Gaps = 48/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   F+  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPTAQLHA---DTRSLEAGDVFVAYA---VDGADNRAFMADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAAR--LRSKATIIAITGSVGKT 120
           A  V+   + +A   +       +          ++A             I +TG+ GKT
Sbjct: 66  AAAVLYQPEGLAHAPAAPAVPVALAVPALDQLAGEIASGWYGDPSDSLLAIGVTGTNGKT 125

Query: 121 TTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
           +  + +  AL+++ +                + S       P     +    D       
Sbjct: 126 SCTQWIATALTALHQPCAVIGTLGTGMPGQLVPSGFTTPDAPQLQRSLAQLRDAGAQAVA 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     +AV T +   HL      +    A               +N
Sbjct: 186 MEVSSHALHQGRANGTAFDVAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVIN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G +   D          +     +   ++      +
Sbjct: 245 RDDAAGRRLLEKLAGRVRTIAYGIGDAPAPDADRELVALDVRATVTGTAFRLRSSWGDAD 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 305 VEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVV 364

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    GR + + G     G    +    L   ++     
Sbjct: 365 ID-YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLAD 419

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +         E      L         DVVV+  K 
Sbjct: 420 EVVVTSDNPRSEDPQHIIDQVVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKG 479


>gi|303258235|ref|ZP_07344242.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
 gi|302858988|gb|EFL82072.1| UDP-N-acetylmuramate--alanine ligase [Burkholderiales bacterium
           1_1_47]
          Length = 462

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 79/465 (16%), Positives = 147/465 (31%), Gaps = 59/465 (12%)

Query: 7   FHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             ++L  +  H  G        V  +    RSI   E F         GHD   +    G
Sbjct: 21  IAEVLINLGYHVSGSDLKENAAVEHL----RSIGA-EIFI--------GHD-ASNVGDAG 66

Query: 65  AG----LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
                  V  +   V    + +IPV         +  LA   RLR     IA+ G+ GKT
Sbjct: 67  VVVTSTAVHADNPEVVEAKNRNIPVV----PRAIM--LAELMRLRQG---IAVAGTHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++T  L         +     +           +   + + E   S          
Sbjct: 118 TTTSLITSILERGGLDPTFVIGGRLNAAGSNAKLGQGL---YIVAEADES-----DASFL 169

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P I+V+T I   H+  +   +  +  A  +  + L   G   +  +      +  K 
Sbjct: 170 NLSPVISVVTNIDEDHMDTYGHDLRNLRKAFTDFIQRLPFYGRAVMCIESENVRAILPKI 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +   +       A+       Q     +  V+      E+  +  G H   N L  
Sbjct: 230 TKPILTYGFREDAQIRAENIRADGTQMH---FTLVRDGAAPEEITVNLPGVHNVLNSLAA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASM----- 353
           +G+   L   ++   +AL+ F     R   +      +G   L+ + Y  +P  M     
Sbjct: 287 IGVALTLDVPMEAIKEALATFKGVGRRFAVWGEAQSLKGEKFLVVDDYGHHPTEMAATIA 346

Query: 354 -----KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +L    PH   R      D+  +   + +  ++         I      G
Sbjct: 347 AARGAYPDRRLLVAFQPHRYTRTRDCFEDLVRVLSNADALVLEAVYPAGEEKI-----FG 401

Query: 409 FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
               +L  ++  +  V   ++   D +   + +++ +GDVV+V  
Sbjct: 402 ADSRSLCRSIRLTGKVEPLFAGNTDEVMELVNNNVKEGDVVLVMG 446


>gi|294792040|ref|ZP_06757188.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
 gi|294457270|gb|EFG25632.1| UDP-N-acetylmuramate--alanine ligase [Veillonella sp. 6_1_27]
          Length = 460

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/418 (14%), Positives = 131/418 (31%), Gaps = 49/418 (11%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH+  ++      G   +V +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNKEYV-----NGVDAIVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L         I          L  +    
Sbjct: 105 TDG---------IAVAGAHGKTSTTSMIGQILVEANADPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E   S           + PH  VIT I   H+ ++  ++ + +A  E  E L 
Sbjct: 153 KGHFSVVEADES-----DGSFLKLHPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +  D+     + ++      +T  ++G   N D+  +           +V  +G
Sbjct: 208 EAGKAIVCGDNENIRYVMSRV----KRTFITYGLEDNNDYVAKNIHYVDSSLVYDVYHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++  +   +         +   IV+     V+      ++      + +        G 
Sbjct: 264 INISRISLRVPGEHNVLNSLAAFIVAHECCGVENRFITKALGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMKAA-------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLRAAKELEKHRVICVFQPHRYTRTSLLKDEFATAFTSADEIY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +       +  +G     + DA     +  VHY  ++D +   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPI--AGIDGRTIPDAVEAATNKVVHYVPSVDDIPAVLAKIVRPNDLV 436


>gi|221202515|ref|ZP_03575545.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
 gi|221208163|ref|ZP_03581168.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221172066|gb|EEE04508.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2]
 gi|221177610|gb|EEE10027.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD2M]
          Length = 465

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 145/412 (35%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRTPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY              + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A I+      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL  +  V   + ET+D L   +     DGDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVV 442


>gi|84686334|ref|ZP_01014228.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665517|gb|EAQ11993.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacterales
           bacterium HTCC2654]
          Length = 466

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 124/405 (30%), Gaps = 43/405 (10%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPV-------FGVD-DVLGALNKLAVAARLRSK--A 108
            A + G   ++ +  +       +  +         VD D+      L   A        
Sbjct: 62  EAFE-GVAALITSPGIPHLYPETNKHIARAYKAGIPVDNDIGLFFRSLGSGAWDEMDQPP 120

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TGS GK+TT  ++   L    K          +IG  +     P+D +  + EL 
Sbjct: 121 RVVAVTGSNGKSTTSALIHHILKVAGK----PAQLAGNIGRGVLDIEPPIDGEVIVLELS 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                  R LT    P +AV T ++P HL    G     +AK  +F        +    +
Sbjct: 177 SYQTDLARALT----PDVAVFTNLSPDHLDRHGGPGGYFAAKRRLFAEGGPDRAVVGVDE 232

Query: 229 DSFFELLKAKSHALGIKTIYSFG---KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                L    +   G   +       K     + +   K    ++    Q+    +  + 
Sbjct: 233 PEGLFLAGQLAMGPGDDRVIRVSVDEKLTGPGWLVYARKGFLSETRKGKQVGSIDLRTIA 292

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  QN      +   L        +A   F     R    +     G    +++S
Sbjct: 293 SLPGTHNHQNACCAYAVCRTLGLSPKVIEQAFHSFAGLPHRS---QLVAEAGGVRYVNDS 349

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY-NISHV 404
              N  +   A+     I          V G   E G         L+ +     N++  
Sbjct: 350 KATNVDAALMALLAFRNIR-------WIVGGLQKEGG---------LSGLAEGLPNVAKA 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ G    A    L  ++      TM+       +    GD V++
Sbjct: 394 YVIGREAEAFARDL-GAVEAQVCTTMEAAVAAAMADAQSGDTVLL 437


>gi|169831595|ref|YP_001717577.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638439|gb|ACA59945.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 449

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 78/422 (18%), Positives = 136/422 (32%), Gaps = 60/422 (14%)

Query: 67  LVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           L+VV+  +   +        L IPV G         +LA      +++ ++A+TG+ GKT
Sbjct: 67  LIVVSPGVPLDVPPVAEGRRLGIPVIG-------ELELAWWF---TRSPVVAVTGTNGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLT 179
           TT  +L        +          +IGVPL             + E+    L      T
Sbjct: 117 TTTALLGELFRQAGRR----TLVAGNIGVPLITEVENYGPQDVIVAEVSSFQL----ETT 168

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP +AVI  +   HL     +E    AKA IF   + +    LN+DD     L +++
Sbjct: 169 RDFRPRVAVILNLTSDHLDRHGTMEAYIEAKAAIFANQQASDWTVLNFDDPRTRALASRT 228

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  I         +    Q  +    +       +             G H  +N L  
Sbjct: 229 RAEVIFFSRQHKLEQGVFIQDGQIMARAGG-----KEAAVCPVRTLSIPGAHNVENALAA 283

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                +L        +AL+ F     R +             +++S   NP +   A+  
Sbjct: 284 TAAGWVLGIGPSALGRALTSFQGVPHRLETVGWVGGVE---YVNDSKATNPDAAIRALDA 340

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDA 417
            +       G  + + G     G    +      E      +  + + G     +A   A
Sbjct: 341 YA-------GPVVLIAG-----GRNKGNDFTAFMEKARE-KVRVLVIIGECAAEMAAAAA 387

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
                 V  ++ + G     + +   G+VV++    +S             F  L+  L 
Sbjct: 388 RAGLGEVLRAKDLPGAVQLARDAARPGEVVLLSPACASWDMFRNYEERGDLFRSLVRELA 447

Query: 466 EE 467
            E
Sbjct: 448 NE 449


>gi|308235256|ref|ZP_07665993.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14018]
          Length = 570

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 32/284 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N I+ DSR I      F IKG ++   +++  A + G    V          ++      
Sbjct: 78  NHITYDSRDIKKNTLLF-IKG-NFKP-EYLKDADKNGLTTYVAEQSYADYTNAVG---LI 131

Query: 88  VDDVLGALNKLAVAARLRSKATI--------------------IAITGSVGKTTTKEMLT 127
           V DV  A++ L+       +  +                    I    S GK      + 
Sbjct: 132 VTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALFSSVD 191

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L       + + +  +     +    +   + + + E+  S         + +  ++A
Sbjct: 192 NCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEV--SSQAYKVERVYGLHFNVA 249

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+S       E+    K +I +  +                L+   +     
Sbjct: 250 AFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLI--LQDAQNEYVDV 307

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           T +S  + +     +   + CS+ S +    + +    +     
Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKY 351


>gi|255262234|ref|ZP_05341576.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
 gi|255104569|gb|EET47243.1| UDP-N-acetylmuramate--alanine ligase [Thalassiobium sp. R2A62]
          Length = 466

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 68/417 (16%), Positives = 135/417 (32%), Gaps = 54/417 (12%)

Query: 48  GPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
           G + DG +           +V+ +     +    +    G+  V  A   LA   RL+S 
Sbjct: 66  GENLDGAE----------VIVISSAIKPGNAEYDAARAKGLPIVRRA-EMLAELMRLKSN 114

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+ G+ GKTTT  M++  L +           N  I             D+ + E 
Sbjct: 115 ---VAVAGTHGKTTTTTMVSALLDA---GGIDPTVINGGIIHAYGSNARVGQGDWMVVEA 168

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S         + +   IAV+T I P H+ ++   + +     +    +   G      
Sbjct: 169 DES-----DGTFNRLPATIAVVTNIDPEHMEHWGSFDNLRQGFLDFVSNIPFYGLAVCCT 223

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + L  K        + ++G +   D +          ++ ++QLQ +   +    
Sbjct: 224 DHPEVQALVGKITDR---RVVTYGFNAQVDVRAINLSYKDGSAYFDIQLQSEDQVIEGCM 280

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      N+   L  V++       + +  +      G  +R+         T+ID+  +
Sbjct: 281 LPMPGDHNVSNALAAVAVSRHLGMKSEEIKTALENFGGVNRRFTRVGKVNGVTIIDDYAH 340

Query: 348 A--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                      A       V++   PH   R   +  D C     +              
Sbjct: 341 HPVEIAAALKAARQACDGRVIAVHQPHRYSRLHDLFDDFCGCFNDADV-----------A 389

Query: 400 NISHVWLSGFHV------LALKDALPRSIHVHYSETM---DGLFLFIQSSLVDGDVV 447
            I+ V+ +G           L   + RS H  ++ ++   + L   ++     GD+V
Sbjct: 390 AIAEVFAAGEDPIEGASRDDLVAGMIRSGH-RHARSILGEEDLERLVREQTKPGDMV 445


>gi|192359523|ref|YP_001983387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cellvibrio
           japonicus Ueda107]
 gi|190685688|gb|ACE83366.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Cellvibrio
           japonicus Ueda107]
          Length = 455

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 120/382 (31%), Gaps = 42/382 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           V V T  +       IP+            + +  R   +A ++AITGS  K+T   ++ 
Sbjct: 86  VAVATPALVQAREAGIPII---------GDIELFVRHA-RAPMVAITGSNAKSTVTTLVG 135

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +         +   ++G P     +  D++  + EL    L  +  L       +A
Sbjct: 136 EMAKAAGIQV----AVGGNLGTPALEL-LRDDIELYVMELSSFQLETVNKLNA----KVA 186

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
            I  I+  HL  +  +     AK  I+ G E       +        + AK    G +  
Sbjct: 187 TILNISADHLDRYPDMRAYILAKLRIYFGAENIVVNRNDILTHPPLAVGAKPVYFGGR-- 244

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   ADF          + ++   L            G H   N L  L +     
Sbjct: 245 --------ADFGAFGLLDRDGEEYLAKNLTPLLPARELKIRGRHNIDNALAALALGDAAG 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +   + AL  F     R        +       ++S   N  +  AAI+ L+++    
Sbjct: 297 IPMAAMLGALREFRGLRHRC---EYVASIDGVEFYNDSKGTNIGATLAAINGLARVPSR- 352

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
                 + G     G+       +L   L       + L G     +  A+   + VH +
Sbjct: 353 ---LFVIAG-----GDGKGQDFTELTASLVASRC-VLVLIGRDAPLIASAVGEQVPVHVA 403

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           +T+        +    GD V++
Sbjct: 404 QTLKDAVNLSLALATAGDAVLL 425


>gi|152990540|ref|YP_001356262.1| hypothetical protein NIS_0793 [Nitratiruptor sp. SB155-2]
 gi|151422401|dbj|BAF69905.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 319

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 8/98 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                +L    G  +          IS     +   + F A      D    +  A+QKG
Sbjct: 1   MRLQSILSLTGGKLLNSPSIAKFYSISTSLEELKRGDLFVAF--SKKD----VDDAIQKG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           A  ++   +    I         VD++   + KL    
Sbjct: 55  AYGIL--HEGPIQISDSETAWIRVDNLDDTMIKLVRFF 90


>gi|147678195|ref|YP_001212410.1| UDP-N-acetylmuramate--L-alanine ligase [Pelotomaculum
           thermopropionicum SI]
 gi|189029016|sp|A5D144|MURC_PELTS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146274292|dbj|BAF60041.1| UDP-N-acetylmuramate-alanine ligase [Pelotomaculum
           thermopropionicum SI]
          Length = 461

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 106/384 (27%), Gaps = 33/384 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R +     IA+ G+ GKTTT  M  + L         +             + + 
Sbjct: 97  LAWLMRRQ---KGIAVAGAHGKTTTTSMTALVLEKNGMDPTIVIGGEL--------SEIG 145

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +   G  E  ++   E       + P I +IT I   HL  +  +E I +A       +
Sbjct: 146 GNAKLGRGEYLVAEADESDGSFLKLDPVIEIITNIEDDHLDYYRSVENILAAFRRFMAKV 205

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            ++G      DD     L A      +       ++      +R  +Q +          
Sbjct: 206 PESGLAVACLDDPRLRELLAGYDRPCLTYALDNPEADYTMRNIRLMRQVTAG--DVYYRG 263

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           G    +     G H   N +  + +   +    +    AL  F     R +         
Sbjct: 264 GFLGCLELSVPGRHNLSNAMAAVAVGRFVGLAFEGIAAALKDFRGAGRRFQLTGEVNGIK 323

Query: 338 FFTLIDES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                             A       V+    PH   R + +     E  E +    I  
Sbjct: 324 VIDDYAHHPSEIKATLKAAGQVKTGRVVGVFQPHRYTRTLFLGERFGEAFEDADVVIISD 383

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                   I      G     +  A+ +     V Y  T   +  ++      GD+++  
Sbjct: 384 IYSAGEKPIE-----GVSAKTIVSAIEKHNGRKVIYLPTRQEIVDYLVQMARPGDMILTM 438

Query: 451 S-----SNSCGFYRLINLLLEEFP 469
                 S       L+  L E   
Sbjct: 439 GAGDIWSAGI---ELVKRLKENQK 459


>gi|107021633|ref|YP_619960.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116688578|ref|YP_834201.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
 gi|105891822|gb|ABF74987.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia AU 1054]
 gi|116646667|gb|ABK07308.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Burkholderia cenocepacia HI2424]
          Length = 515

 Score = 53.3 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 72/480 (15%), Positives = 142/480 (29%), Gaps = 48/480 (10%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD---FILHAVQKG 64
             +  A+      + P   ++    D+RS+   + F A      DG D   F+  AV +G
Sbjct: 12  QQIAAALAWLRQHVAPTAQLHA---DTRSLEAGDVFVAYA---VDGADNRAFMADAVARG 65

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL--GALNKLAVAAR--LRSKATIIAITGSVGKT 120
           A  V+   + +A   +       +          ++A             + +TG+ GKT
Sbjct: 66  AAAVLYQPEGLAHAPAAPAVPVALAVPALDQLAGEIASGWYGDPSDSLLAVGVTGTNGKT 125

Query: 121 TTKEMLTIALSSIKKTY------------ACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
           +  + +  AL+++ +                + +       P     +    D       
Sbjct: 126 SCTQWIATALTALHQPCAVIGTLGTGMPGQLVPTGFTTPDAPQLQRSLAQLRDAGAQAVA 185

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S     +   +     IAV T +   HL      +    A               +N
Sbjct: 186 MEVSSHALHQGRVNGTAFDIAVFTNLTQDHLDYHGTFDAY-EAAKAKLFAWRGLRAAVIN 244

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR----KWKQCSEQSWMEVQLQGKSME 282
            DD+    L  K         Y  G +   D          +  +  +   ++       
Sbjct: 245 RDDAAGRRLLEKLAGRVRTIAYGIGDAPAPDADRELVALDVRATATGTAFRLRSSWGDAN 304

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V    +G     N+L  LG +       D A+  +       GR +R    L      ++
Sbjct: 305 VEVGTLGTFNVSNLLAVLGALLAADVPFDAALAEIERLESVNGRMQRLGGRLQNDEPLVV 364

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y   P +++  +  L  I+    GR + + G     G    +    L   ++     
Sbjct: 365 ID-YAHTPDALEKTLDALRPIAAARGGRLVCMFG----CGGDRDATKRPLMGAIAERLAD 419

Query: 403 HVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            V ++  +  +         +   +         E      L         DVVV+  K 
Sbjct: 420 EVVVTSDNPRSEDPQHIIDQVVAGMTAPDRARRIEDRASAILQAVRGAAREDVVVLAGKG 479


>gi|269302690|gb|ACZ32790.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae LPCoLN]
          Length = 417

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 104/378 (27%), Gaps = 63/378 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V    SL IPV  V D+  AL                 ITGS GKTTT       L+
Sbjct: 72  HPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTL----FLT 120

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +  T         +IG+P+        V   + E+    L         +    +V   
Sbjct: 121 HLLNTLGIPAIAMGNIGLPILDHMGQPGVR--VVEISSFQLATQEEHIPAL--SGSVFLN 176

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            +  HL     ++    AK                      +    +     +    S G
Sbjct: 177 FSRNHLDYHRNLDAYFDAKLR-------------------IQKCLRQDKTFWVWEECSLG 217

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            S     +  +       +   + L  +                                
Sbjct: 218 NSYQIYSEEIEEILDKGDALKPIYLHDRD----------------NYCAAYALANEVGWV 261

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           +    L      E    R      +     I++S      +++ A+  +           
Sbjct: 262 SPEGFLKAIRTFEKPAHRLEYLGEKDGVHYINDSKATTVTAVEKALMAV-------GKDV 314

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ + 
Sbjct: 315 IVILGGKDKGGDFPA-----LASVLSQTT-KHVIAMGECRQTIADALSEKIPLTLSKDLQ 368

Query: 432 GLFLFIQSSLVDGDVVVV 449
                 Q+   +GD V++
Sbjct: 369 EAVSIAQTIAQEGDTVLL 386


>gi|221194801|ref|ZP_03567858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
 gi|221185705|gb|EEE18095.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium rimae
           ATCC 49626]
          Length = 472

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 121/399 (30%), Gaps = 40/399 (10%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA----------ARLRSKATIIAITGSV 117
           VV  TD V    SL I   GV D        A            A   S    IAITG+ 
Sbjct: 63  VVTGTDEVCGTYSLCIASPGVPDTSALFLSAAAHSQEIIGEPEFAFRESPEKWIAITGTN 122

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++T  L +  +    +G+    I             ++ + EL    L  I  
Sbjct: 123 GKTTTTTLVTKILQTAGQKAISVGNIGRTIT---DELSSRTPDEWFVAELSSFQLATIAR 179

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L     P  A +  I P HL     +   A+AK  IFE  +      ++  D +      
Sbjct: 180 LH----PKTAALLNITPDHLEWHGTLAAYAAAKERIFENFDIHDLAVVSDLDEYCRACAQ 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  A  I+  +        D +        +   +  +   ++  +    +  H   N L
Sbjct: 236 RLEARHIRVCH----LNTEDPKTEHAAFIRDGVLVVRRSGKETELIRAADLKIHGLHNAL 291

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L   ++        +         E    R            +++S   N  +++ ++
Sbjct: 292 NALAASALALEAGVDPVSVRHALLDFEALEHRIEPVREVSGVLYVNDSKATNTDAVEKSL 351

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +                 G +  +G   +   +         +       G     + +A
Sbjct: 352 TAFPTR------------GVVLLLGGHDKGTDLGSLAAAVNRSCKTAICYGAAGPRIAEA 399

Query: 418 LPRSI-------HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L           HV  +  M   F       + GDVV++
Sbjct: 400 LEVEKTKQHSDLHVVSAPHMKEAFEAATKRAMAGDVVLL 438


>gi|254507374|ref|ZP_05119509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
 gi|219549630|gb|EED26620.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 16]
          Length = 453

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 113/362 (31%), Gaps = 23/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEACGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G IF    
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +      ++    G  +       +        +       +  EV    +
Sbjct: 223 DKALADVLERGCWSETESSGEQGDWQA------EKVVNDGSHFKVFFQGNQVGEVRWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +    D A  AL  F       +R  C       T+ D+  + 
Sbjct: 277 GDHNVDNALMAIAAARHVGVTPDLACDALGKF---INTKRRLECKGEIAGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +      +  G R  +         + +  H +     SL     V+L  
Sbjct: 334 -----PTAIELTLGGLRNKVGPRRILAVLEPRSATMKRGVHKETLA-ASLRAADSVFLYQ 387

Query: 409 FHVLA--LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +   ++D   +       S+ +D L   I +    GD ++V  SN  GF  +   LL
Sbjct: 388 PDSIDWSVEDVAQQCTQPAWTSKDVDALVEMIVAEAQTGDQILV-MSNG-GFEGIHGKLL 445

Query: 466 EE 467
           ++
Sbjct: 446 DQ 447


>gi|298507099|gb|ADI85822.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Geobacter
           sulfurreducens KN400]
          Length = 452

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 90/289 (31%), Gaps = 27/289 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + E+    L  IR      RP +AV+  I   HL  ++  +E   AKA IFE    +
Sbjct: 158 DRVVVEISSFQLEWIR----SFRPTVAVLLNITEDHLDRYATYQEYIDAKARIFENQTAS 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN DD     L  ++ A              +  +            +  +  G+ 
Sbjct: 214 DWAVLNVDDPIVAGLTGRTRAAV---------FPMSRQRELAEGIFYRDGVIIFRHAGRQ 264

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                         N+   +  ++        A +AL+      G   R           
Sbjct: 265 ERFPTDRFRITGVHNIENIMASLAAALLLGCDADRALACVEAFGGLPHRMELVRELDGVR 324

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  S++ A++  + I+                 G+     +  LA +++   
Sbjct: 325 YFEDSKATNVGSVEKALASFNDITLIAG-------------GKDKGGSYAPLAGLVAER- 370

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + H+ L G     +   L        + T++       S    G VV+ 
Sbjct: 371 VRHMILIGEAKDRMARELGHLTDTRMTVTLEDAVELAASLTQPGGVVLF 419


>gi|237752717|ref|ZP_04583197.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376206|gb|EEO26297.1| predicted protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 356

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +++++   G  +      F + I  +S S+   + F A           I  A++KGA 
Sbjct: 8   VNEIVEIAFGTLLNKPSISFFHQICDESSSVRKGDLFIATNKESAQAQKDIEEAIEKGAF 67

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            ++ +     ++    +    V+D+  +L ++     L     I+ +          +++
Sbjct: 68  GILFS--GNIAMSDKEVAWISVEDLEQSLMRILRHYLL-INNKILFLLHKEEYEIATQII 124

Query: 127 TI 128
             
Sbjct: 125 AH 126


>gi|28209954|ref|NP_780898.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium tetani E88]
 gi|44888201|sp|Q899J1|MURC_CLOTE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28202389|gb|AAO34835.1| UDP-N-acetylmuramate--alanine ligase [Clostridium tetani E88]
          Length = 456

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 130/394 (32%), Gaps = 33/394 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
              V   +   +    +     + +    L  L    +       IA++G+ GKTTT  M
Sbjct: 75  TAAVSEDNPELTKALTN--NIKIMNRAEFLGYLMDGHKYN-----IAVSGTHGKTTTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           ++    +       +     +I        +  +V  G  E  ++   E +       P+
Sbjct: 128 MSHITVNANLDPTILVGGELNI--------INGNVRTGKSEYFLTEACEYKESFLKFFPY 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   HL  +  I  I +A ++    + K G +    +D     +        I 
Sbjct: 180 IGVILNIDADHLDYYKDINHIKNAFSKFANLIPKDGYLIACAEDENINDIIKNIDCTIIT 239

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              + G  +  +            S+  ++       V  +  G +   N L ++ +   
Sbjct: 240 YGLNKGDIQAKNITFDNKGC---ASFDVIKNSSVLFSVKLNVPGSYNVLNALASICVSFA 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAAI 357
           L  D ++ IK L  FH    R         +   T+I++  +         + A    + 
Sbjct: 297 LNIDKESIIKGLESFHGTHRRF---ELKGVRNDVTVIEDYAHHPTEIKATLSAAKNYPSN 353

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +L    PH   R  ++  D  E    + +  +         + + +  S      L+  
Sbjct: 354 RILCVFQPHTYTRTYSLFEDFTESFYNTDTLILADIYPAREKD-TGIVSSDMLGNKLRK- 411

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             ++I+     + + +  +++     GD+V++  
Sbjct: 412 --KNINCINLHSFEDISDYLKKETKPGDLVLIMG 443


>gi|212709986|ref|ZP_03318114.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
 gi|212687395|gb|EEB46923.1| hypothetical protein PROVALCAL_01037 [Providencia alcalifaciens DSM
           30120]
          Length = 447

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 50/373 (13%), Positives = 114/373 (30%), Gaps = 34/373 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++       F + E   
Sbjct: 93  VLAVAGTHGKTTTAGMLA---WILQDCGYEPGFLIGGVPGNFDVSSQIGKSPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  +E I      +   +  +G IF+  
Sbjct: 150 YDCAFFDKRSKFVHYSPKTLILNNLEFDHADIFENLEAIQKQFHHLVRIVPSSGKIFMPS 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +DS  + +            +S  +    + +    K   + S  +V  Q + +  V+  
Sbjct: 210 NDSNLKQVMN-------MGCWSEQELVGENGEWHAVKLNHDGSQFDVYYQQEKVGEVNWS 262

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              +      +     +                     R    R   N+     + + + 
Sbjct: 263 QVGNHNIQNGLMAIAAAHHVGVPAKEACLALDKFINARRRLELRGVENE---VSVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHV 404
            +P ++ A +     +     G    +      +   S +  + +++     +L     V
Sbjct: 320 HHPTAILATLEA---LRSKVGGTSRII----AVLEPRSNTMKMGISKNDIAPALGRADEV 372

Query: 405 WLSGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
           +L    ++  +   +         +   +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLFQPANIPWMVTEIAEHCVQPARWHADIDALANMVIETAQPGDHILV-MSNG-GFGGIH 430

Query: 458 YRLINLLLEEFPA 470
            +L+  L  +  A
Sbjct: 431 EKLLAGLKRKAEA 443


>gi|198282931|ref|YP_002219252.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218668082|ref|YP_002425134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247452|gb|ACH83045.1| UDP-N-acetylmuramate [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520295|gb|ACK80881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 455

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 108/363 (29%), Gaps = 27/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  +LT  L          IG    + GV   L     D  F + E  
Sbjct: 105 VLAVAGTHGKTTTTSILTWILQEAGLDPGFLIGGEARNFGVSARLT----DSPFFVIEAD 160

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                            P   ++  +   H   F  +E I +    +   +   G I + 
Sbjct: 161 EYDTAFFDKRSKFVHYHPRSLILNNLEYDHADIFPDMEAIITQFHHLLRTVPGAGAIIVK 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNA-DFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                 + +  +     ++     G+ +   D          EQ     Q+  +     +
Sbjct: 221 DGVPALKRVLERGCWTPLQRFAGTGEWQVRLDAVDGSRFTVLEQGVERGQVGWEMAGSFN 280

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                            +++  A + +          +   G            T I  +
Sbjct: 281 AENALAALLAARHAGVPLAVGCAALRSFQGVRRRLELRGRAGGVAVYDDFAHHPTAIAAT 340

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHV 404
             A    M+    +++ + P     ++ V              H   L   L   + + V
Sbjct: 341 ITALRGRMEGTERLIAVLEPRSNTMKMGV--------------HRQTLGPSLQGADRAFV 386

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           +        +  AL  +  V+    MD L   + + L  GD V++  SN   F  +   L
Sbjct: 387 YAPADLGWDVAAALDSAAQVYV--DMDALLRALDAELRPGDDVLI-MSNG-AFGGIHGRL 442

Query: 465 LEE 467
           LE 
Sbjct: 443 LER 445


>gi|271502041|ref|YP_003335067.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
 gi|270345596|gb|ACZ78361.1| UDP-N-acetylmuramate/alanine ligase [Dickeya dadantii Ech586]
          Length = 486

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 140/411 (34%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 79  ASVVVVSSAIAADNPEIIAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+T   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVTSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD+    L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGHAVMCLDDAVIRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S++AD ++  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 242 KV----GRHITTYGFSEDADVRVADYRQVGAQGLFTLARQGKPLLNVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D +  ++AL  F     R         +    +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIDDEAILRALVRFQGTGRRFDFLGEFPLQPVNGKSGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYPAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +       ++ L   +  +L   D+V+V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRGRGKIDPIMVPDVETLPELLAQALQGDDLVLVQG 464


>gi|90423695|ref|YP_532065.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB18]
 gi|118595684|sp|Q216E0|MURD_RHOPB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|90105709|gb|ABD87746.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB18]
          Length = 466

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 106/375 (28%), Gaps = 43/375 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  ++   L               +IG  +     P      + 
Sbjct: 112 PDAPFVAITGTNGKSTTTALIAHLLRQAGFDTQMG----GNIGTAILSLEPPAAGRVHVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   HL     IE  A+ K  +  G+   GT  +
Sbjct: 168 EMSSYQID----LTPSLDPSVGILLNVTEDHLDRHGSIEHYAAVKQRLVAGVPDGGTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD F      +    G   +    K   A+         +   +     + +++  + 
Sbjct: 224 GVDDDFSATAAERVALDGKTVLRLSVKRPLAN----GIVVENNAIYRVTDGEREAIARID 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N        + + A                G   R      QG    +++S
Sbjct: 280 GIGSLRGLHNAQNAAAAAAAVLALGVDREALQRGLRSFPGLAHRMEQVGRQGETLFVNDS 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S   +I     G+     G +  +                   I   +
Sbjct: 340 KATNADAAAKALSSFEEIFWIAGGKPKT--GGIDSLAGFFP-------------KIRKAY 384

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS------ 452
           L G         L   +     ET++             +    VV++    +S      
Sbjct: 385 LIGEAAQEFAATLDGKVDYEICETLEVAVPHAARDAAASELVDPVVLLSPACASFDQFRN 444

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 445 FEIRGNRFRELVTAL 459


>gi|33863701|ref|NP_895261.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9313]
 gi|60390535|sp|Q7V5V5|MURD_PROMM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33635284|emb|CAE21609.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 460

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 101/347 (29%), Gaps = 33/347 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA R  S    IAITG+ GKTT   +L   L S        G+  +         R
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGNVGHAAAEVALKWR 157

Query: 156 MPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            P     D+ + EL    +         + P + + T + P HL     ++   + K  +
Sbjct: 158 QPNAQRPDWLVMELSSYQI----EAAPEIAPRMGIWTNLTPDHLERHGTLDAYRTIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               E++     N DD      ++        +    G + +        +       + 
Sbjct: 214 L---ERSEIRIFNGDDPDLRSQRSSWDKGLWVSSEGPGTANHRADFWIDAE-----GLVR 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H  QN+L+                 +L  F     R       
Sbjct: 266 EPQGALFAASALAMPGQHNLQNLLLVTAAARQTGLPAKAIEASLRSFPGVPHR---LEQL 322

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +    ++ ++S   N  +    +  +           + + G   + G+ S        
Sbjct: 323 GHIQQMSVYNDSKATNYDAACVGLKAV-------PPPAVVLAGGQTKQGDASGWLKQ--- 372

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFI 437
                 N   V L G     L++ +     S  +H    ++      
Sbjct: 373 ---LDQNACAVILFGAGASELQELIKTSGFSGELHCCSNLNAAVTLA 416


>gi|297539591|ref|YP_003675360.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
 gi|297258938|gb|ADI30783.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera sp. 301]
          Length = 472

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 73/398 (18%), Positives = 126/398 (31%), Gaps = 33/398 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +  +  IPV         +  LA   R R     IA+ G+ GKTTT  ++   L
Sbjct: 77  ENPEVKAARAKKIPVV----PRALM--LAELMRFRQG---IAVAGTHGKTTTTSLIASIL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +                  +   G  E  ++   E       + P +AV+T
Sbjct: 128 AEAGMDPTFVIGGKLE--------AANANAKLGTGEYIVAEADESDASFLHLTPVMAVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  +    +   +    F        + +   D              + T    
Sbjct: 180 NIDQDHMDTYEHSFDKLKSAFVEFLQQLPFWGMAVVCIDDANIREILPRVTKPVMTYGFS 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++     +R        +   +       +V  +  G H   N L  + I S L    
Sbjct: 240 EDARVRAINVRADDGKMHFTAQRINGVVTEFDVTLNLPGNHYVLNALAAIAIASELNVPD 299

Query: 311 DTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
              IKAL  F     R +RY   A+  G    + + Y  +P  M+A I+      P+   
Sbjct: 300 AAIIKALKEFKGVGRRFERYGEIAVKGGGAFTLIDDYGHHPVEMQAVIAAARAAFPNR-- 357

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA--------L 418
               V+         ++    D   VLS  +   ++ V+ +G   +   D         +
Sbjct: 358 --RLVMAFQPHRYTRTRDCFEDFVRVLSSTDAVLLTEVYSAGEASIVAADTRSLIRSIRI 415

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
              +   + ET D L   I +     DVV+V  + S G
Sbjct: 416 GGKVEPLFVETTDELPEAILNMAQADDVVIVMGAGSIG 453


>gi|157803465|ref|YP_001492014.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
 gi|166224723|sp|A8EXZ6|MURC_RICCK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157784728|gb|ABV73229.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia canadensis str.
           McKiel]
          Length = 477

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 125/407 (30%), Gaps = 50/407 (12%)

Query: 66  GLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             VV+++ +      +       IP+        A   LA   RL+     +A++GS GK
Sbjct: 74  SYVVISSAINPDNPEIQEALERKIPII-----RRA-EMLAELMRLKCS---VAVSGSHGK 124

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++     +       I     +     +        ++ I E   S         
Sbjct: 125 TTTTSLVACLFEAAGLCPTVINGGIINN---RSTNAYLGSSNYLIAEADES-----DATF 176

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   IA+IT I P HL  +     + SA       L   G      D      L    
Sbjct: 177 IHIPSTIAIITNIDPEHLDYYKDFATLISAFRSFIINLPFYGFAVCCIDHKIVRKLVDDI 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               I T        +                 + S   V       ++     G H   
Sbjct: 237 TERKIVTYGIDSADAHIIAFNINTDIASSTFDVKISLPNVLGTTIIEKITIPIPGRHNIL 296

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L   +       + F   + R       + +     I + Y  +P  +K
Sbjct: 297 NSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFT----KVAEYNMASIIDDYAHHPEEIK 352

Query: 355 AAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           A ++    I+    G+ IA+        M  + +       D      +  I+ ++ +G 
Sbjct: 353 ATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDFMLCFAD----ADILYITDIYAAGE 408

Query: 410 HV------LALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVV 447
           +        +L D + ++      ++  T+D     I  + V GDV+
Sbjct: 409 NPIEGITGQSLVDKITKNKYHDQANFLATLDDAVGVIIDNAVSGDVI 455


>gi|253575689|ref|ZP_04853025.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845027|gb|EES73039.1| UDP-N-acetylmuramate-alanine ligase [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 458

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 77/399 (19%), Positives = 131/399 (32%), Gaps = 39/399 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA LVV +T +                VL     LA     R+    +A+ G+ GKTTT 
Sbjct: 65  GADLVVYSTALPQDNVERLEAQEQGIPVLHRSQMLARLLNERNG---VAVAGAHGKTTTS 121

Query: 124 EMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
            M+              IG     +G      +        + E   S    +++     
Sbjct: 122 SMIALAMELCGTDPTYIIGGEIMDMGTNAKAGQ----GKCVVAEADESDGSFLQYY---- 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI-FLNYDDSFFELLKAKSHA 241
            P + V+T I   HL N+ G           F    K      +  DD     L  +  +
Sbjct: 174 -PSLGVVTNIEADHLENYGGDFNRLKEAYVQFLNQIKPDGKAVVCGDDPNIRELLPRVQS 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             I    ++G   N D+  R+ +      ++   Q   +   V     G H   N + T+
Sbjct: 233 PTI----TYGIETNCDYTAREIELGDRCVTFKMYQGDRELGTVELSVPGRHNVYNAMATV 288

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV- 359
            +        D  +KAL  FH  + R +     L +    LI + Y  +P  ++A I+  
Sbjct: 289 IVCMEAGIPFDEVVKALRHFHGAKRRFQ----VLGEKNGILIIDDYAHHPTEIQATIAAA 344

Query: 360 -------LSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                  ++   P    R   +L       G+  +    D+        I      G   
Sbjct: 345 KATGKRIIAVFQPQRYTRTFFLLDAFSRAFGDADEVIITDIYSPAGEKAIE-----GVSS 399

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
             L + + ++ +    Y  T   +   +Q  L  GD+V+
Sbjct: 400 SKLVELIKQNSNPGARYLPTKQDVIADLQHRLKPGDLVL 438


>gi|171742512|ref|ZP_02918319.1| hypothetical protein BIFDEN_01624 [Bifidobacterium dentium ATCC
           27678]
 gi|171278126|gb|EDT45787.1| hypothetical protein BIFDEN_01624 [Bifidobacterium dentium ATCC
           27678]
          Length = 292

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 6/124 (4%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T   L              +  V  ++ D  SI P   F    G   D    ++ 
Sbjct: 8   MNRRMTLGHLASQYGFDLDPSFASEVTVTSLADDIDSIRPGALFV--PGADVDVRQ-LVQ 64

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           A Q GA   +V   M   I  L IP+   +     L KLA            + AI GS 
Sbjct: 65  AQQLGAYGAIVPHAMRGEIQDLQIPLIYAEPTAQQLGKLACDIAGAPSDVLAVFAIIGSD 124

Query: 118 GKTT 121
            ++ 
Sbjct: 125 RESV 128


>gi|222053882|ref|YP_002536244.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
 gi|254766004|sp|B9M173|MURC_GEOSF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221563171|gb|ACM19143.1| UDP-N-acetylmuramate/alanine ligase [Geobacter sp. FRC-32]
          Length = 458

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 145/426 (34%), Gaps = 58/426 (13%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      +       IPV         +  LA   R++     IAI G+ G
Sbjct: 65  ADVVVISSAVHDDNPEVIEARERLIPVI----PRAEM--LAELMRMKYG---IAIAGTHG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L++       +     +     T AR+     F + E   S        
Sbjct: 116 KTTTTSMVATILATGGIDPTIVIGGRLNSI--GTNARLGQG-KFLVAEADES-----DGS 167

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + P IAV+T I   HL  +SGIEEI     E    +   G   L  D+     +   
Sbjct: 168 FLKLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLDNGNVADIIPL 227

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                     ++G +  ADF+  + +      S++      K  E+  +  G H   N L
Sbjct: 228 VKK----RFTTYGLTAQADFRATEIRHEGFTTSFVAHYKGQKLGEISFNMPGAHNVLNAL 283

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
            T+ + + L    +        F     R +       +    ++ + Y  +P  +    
Sbjct: 284 ATIAVATELDMRFEDIQAGFKSFGGVGRRFQ----VKGEVNGIMVVDDYGHHPTEI---- 335

Query: 358 SVLSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------- 407
              + ++    G  R  V+         ++    +  +    Y+   + L+         
Sbjct: 336 --KATLAAAKGGWDRRLVVVFQPHRYTRTKELFEEFVKAF--YDADILILTDIYPAGEQP 391

Query: 408 --GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRL 460
             G    AL   + R     V +    + +   + S + +GD+V+   +         +L
Sbjct: 392 IEGVTAEALSARIKRHGQREVTFVADRNKVCDHLLSIVKEGDIVLTLGA-GNILQAGEQL 450

Query: 461 INLLLE 466
           +  L E
Sbjct: 451 VEKLRE 456


>gi|320161741|ref|YP_004174966.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319995595|dbj|BAJ64366.1| UDP-N-acetylmuramate--L-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 461

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 132/413 (31%), Gaps = 43/413 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI HA     GA +VV ++ +      +       IPV         L       R    
Sbjct: 50  FIGHAAGNISGATMVVRSSAIPEDNPEVQAARQAGIPVLKRA---EFLETFLKKYR---- 102

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             +IA+ G+ GKTTT  M+   LSS+ +  + I          L         D  + E 
Sbjct: 103 --VIAVAGTHGKTTTTGMIAWMLSSLAQNPSYIIGGVVRD---LHTNAHAGKSDLFVIEA 157

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E   +   + PHIAVIT +   H   F  + + + A  +    ++  G + +N 
Sbjct: 158 D-----EYDRMFLGLHPHIAVITYLEHDHPDCFPTMADYSGAFEDFIRQIQAGGILLVNG 212

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHH 286
           D      L   +        Y   +      +     +    S     Q+       + H
Sbjct: 213 DHPPTRALGQATPKGVKVMTYGESEHNTYFLKHASVNRWGGFSADVWKQMPDGENRRLLH 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                  ++ L+       +   +   +   +          R      +     + + Y
Sbjct: 273 LALQVPGKHNLLNALAALAVADQLGLMLSPAAEALHLFHGTGRRFEVRGEANGVTLIDDY 332

Query: 347 NANPASMKAAISV----------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             +P  ++  ++            +   PH   R  A++ + C+  E + +  +      
Sbjct: 333 AHHPTEIRTTLAAARARYPERHIWAVWQPHTYSRTQALMEEFCQSFEDADAVVVLEIYAA 392

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              N       GF    + + + +     +  T++    ++ + L  GDVV+V
Sbjct: 393 REKNP------GFSAREVVNRM-KHPAAVFQPTLETAQEYLLNCLQPGDVVLV 438


>gi|328471997|gb|EGF42874.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus 10329]
          Length = 437

 Score = 53.3 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 126/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T         +IGVP     +  D D  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTV----GVGGNIGVPALEL-LEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++ + A    ++  H+  + G+ +  +AK  IF+           
Sbjct: 162 LSSFQL----ETTSSLKLNAAAFLNLSEDHMDRYEGMADYRAAKLRIFDN---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +       +++      + +FG     D Q    +    ++W+    Q         
Sbjct: 208 AELAVVNRDDQETYPEVEMPVVTFGS----DEQAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|15618810|ref|NP_225096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae CWL029]
 gi|16752135|ref|NP_445502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae AR39]
 gi|33242264|ref|NP_877205.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae TW-183]
 gi|30316148|sp|Q9Z705|MURD_CHLPN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|4377221|gb|AAD19039.1| Muramoylalanine-Glutamate Ligase [Chlamydophila pneumoniae CWL029]
 gi|7189877|gb|AAF38745.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae AR39]
 gi|33236775|gb|AAP98862.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pneumoniae TW-183]
          Length = 417

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 104/378 (27%), Gaps = 63/378 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V    SL IPV  V D+  AL                 ITGS GKTTT       L+
Sbjct: 72  HPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTL----FLT 120

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +  T         +IG+P+        V   + E+    L         +    +V   
Sbjct: 121 HLLNTLGIPAIAMGNIGLPILDHMGQPGVR--VVEISSFQLATQEEHIPAL--SGSVFLN 176

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            +  HL     ++    AK                      +    +     +    S G
Sbjct: 177 FSRNHLDYHRNLDAYFDAKLR-------------------IQKCLRQDKTFWVWEECSLG 217

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            S     +  +       +   + L  +                                
Sbjct: 218 NSYQIYSEEIEEILDKGDALKPIYLHDRD----------------NYCAAYALANEVGWV 261

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           +    L      E    R      +     I++S      +++ A+  +           
Sbjct: 262 SPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTAVEKALMAV-------GKDV 314

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ + 
Sbjct: 315 IVILGGKDKGGDFPA-----LASVLSQTT-KHVIAMGECRQTIADALSEKIPLTLSKDLQ 368

Query: 432 GLFLFIQSSLVDGDVVVV 449
                 Q+   +GD V++
Sbjct: 369 EAVSIAQTIAQEGDTVLL 386


>gi|313891490|ref|ZP_07825103.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
 gi|313120067|gb|EFR43246.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dialister
           microaerophilus UPII 345-E]
          Length = 449

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 83/300 (27%), Gaps = 33/300 (11%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                 +P  A I  I P HL     +E    AKA IFE +     I LN DD +   L 
Sbjct: 166 EFIKNFKPKAAAILNITPDHLERHHTMEAYVQAKARIFENMNFENCILLNADDKYTNELT 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
             ++      ++S  K+ +    L   +        +               G     N 
Sbjct: 226 EMANKHTNVCLFSIQKNIDNGAFLDGEELVI---SYKGNKINICNINELQIKGKQNYANA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L    +       ++    AL  F     R                ++S   N  +    
Sbjct: 283 LAASFLAFFSGISLEAIRAALKEFKGLPHRI---EFVRKFKDINYYNDSKATNTDASIKG 339

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +    +      G            G        +  + +   +   + L G      + 
Sbjct: 340 MEAFDKPVILIAG------------GHDKGIPLSEYMKKVKE-HTKELILIGEATERFEK 386

Query: 417 -ALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLIN 462
            A+   + ++  ++ M+            GD++++             +     F R++N
Sbjct: 387 VAINEGVSNITRAKDMEDAVYKATKFAEAGDIIILSPACSSFDMYKNMAERGNDFKRIVN 446


>gi|255994322|ref|ZP_05427457.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
 gi|255993035|gb|EEU03124.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Eubacterium
           saphenum ATCC 49989]
          Length = 451

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/387 (17%), Positives = 118/387 (30%), Gaps = 48/387 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-R 155
           +LA      +K   IAITG+ GKTTT  +      +             +IG P++ +  
Sbjct: 94  ELAYRY---AKGKFIAITGTNGKTTTTTLAGEIFKNAGFDV----RICGNIGRPVSESLE 146

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +  + + E+    L          +P I++I  I   HL     +E   +AK  +FE
Sbjct: 147 NSNEDTYFVTEVSSFQL----EAISKFKPFISIILNITEDHLDRHKTMENYIAAKCRVFE 202

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             ++  ++  N DD         S AL         +   A  +  K     +     + 
Sbjct: 203 NQDERDSLIYNADDEGVAKCAHGSQALKYAISLKNPQKNGAYLKDGKLILAIDGRTQVLC 262

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                     H I   +A ++   L   SI +                +    R      
Sbjct: 263 DAKDVNLFGEHNIQNILAASLAALLAGASIDSIGNTVKKF--------KAVEHRLEYVDT 314

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  +   AI  L        G    + G     G    +   + A  
Sbjct: 315 ACGVKYINDSKGTNVDASTIAIKAL-------PGGIHLIAG-----GYDKGADFSEFARG 362

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVK-S 451
                +  ++L G      +  +  +     +    T+        SS   GD+V++  +
Sbjct: 363 FD-GKVKALYLFGATKERFEKEVKHAGFEGRISVCNTLRECVEKASSSAASGDIVLLSPA 421

Query: 452 S-----------NSCGFYRLINLLLEE 467
           S               F  L+  L E 
Sbjct: 422 SASWDMYKSFEERGDEFKELVVELKER 448


>gi|167622683|ref|YP_001672977.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
 gi|167352705|gb|ABZ75318.1| UDP-N-acetylmuramate [Shewanella halifaxensis HAW-EB4]
          Length = 461

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 126/375 (33%), Gaps = 20/375 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     +    ++A++G+ GKT+T  ML      ++      G     +     ++ 
Sbjct: 97  QFLAEHILPQR--WVLAVSGTHGKTSTSSMLA---WILEDCGYEPGFLIGGVPQNFGVSA 151

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 F + E     S   + R      +P   VI  +   H   F  ++ I      +
Sbjct: 152 RLGGSPFFVVEADEYDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHV 211

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G I    D    + +             ++  + ++              +  
Sbjct: 212 IRTVAGEGKIIWPADAVSVQQVIEMGCWSE---QETYHLAPSSQGWHAVNLTQDGHKFEV 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                    +    IG H  +N +M +     +    D AI AL+ F P + R +     
Sbjct: 269 FFDGESQGVLDWQLIGQHNIENAVMAIAAARHVGVKPDAAIAALTQFAPPKRRMELLDTV 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                +    + +  +P ++    + LS +       ++ V+ +       S      LA
Sbjct: 329 NGIEVY----DDFAHHPTAI---TTSLSGMRARVGEAKVTVILEPRSNTMKSGVHKDTLA 381

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             L+L + ++++ +G     ++ A+  + I V     +D +   + +     D ++V  S
Sbjct: 382 NSLALASNAYLYQAGNIDWDMRSAMSSASIPVEVLYDIDEIVDKVAAQACSTDTIIV-MS 440

Query: 453 NSCGFYRLINLLLEE 467
           N  GF  L   LL +
Sbjct: 441 NG-GFGGLHQKLLAK 454


>gi|51246782|ref|YP_066666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Desulfotalea psychrophila LSv54]
 gi|50877819|emb|CAG37659.1| probable UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Desulfotalea psychrophila LSv54]
          Length = 478

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 110/383 (28%), Gaps = 28/383 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA        + +I  TG+ GKTTT  +L   L   K     +               
Sbjct: 107 QALAHFFIRSRSSLVI--TGTHGKTTTCSLLASVLYHAKLDPTFMIGGIVRE---FNSNF 161

Query: 156 MPVDVDFGIFELGMSH--LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E         +        RP IAVIT++   H   F+ +E+I  A A+ 
Sbjct: 162 RLGKGKYFVAEGDEYDTAFFDKESKFLHYRPQIAVITSLEFDHADIFADLEQIKRAFAKF 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L   G +  N D+     L   +          +G + +  + L K    S  +  E
Sbjct: 222 IQLLPPDGLLIANLDNPDIAELAQAAPCPVEG----YGLNSSFPWSLGKISSQSGYTHFE 277

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK-------ALSVFHPKEGR 326
           V   G   +     +         + +  +          I         +       G 
Sbjct: 278 VLKDGTLWDSFTVALPGQHNCLNSLAVCAIMHHLGLDTKTINQGLVAFGGVKRRQEIRGI 337

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELS 385
                   +            A   +      +++   P     R  +      E  + S
Sbjct: 338 ENNITVIDDFAHHPTAVRETLAALKAAYPQNRLVTVFEPRTNSSRRTIFQKQYSESFDSS 397

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
               +     L  Y    ++          D   R +        D + L ++S L  GD
Sbjct: 398 NIVLLREPVPLVDYPADQLF---SSKQLTCDLKKRGLKAASFANTDQILLHLKSLLQPGD 454

Query: 446 VV--VVKSSNSCGFYRLINLLLE 466
           VV  +   SN  GF  +   LLE
Sbjct: 455 VVAIL---SNG-GFDNIHVRLLE 473


>gi|239907965|ref|YP_002954706.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
 gi|239797831|dbj|BAH76820.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           magneticus RS-1]
          Length = 442

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/354 (17%), Positives = 107/354 (30%), Gaps = 58/354 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +   I+A+TGS GKTTT  +++  L +  +          +IG PL+   +
Sbjct: 107 ELASWF---TPEPIVAVTGSNGKTTTVMLISALLEAAGRRVFTG----GNIGTPLSDHVL 159

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D  + E+    L     LT   RP +AV+   A  HL   + ++           
Sbjct: 160 SEEPADVVVLEVSSFQL----QLTKTFRPKVAVLLNFAANHLDWHADLD----------- 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                            E L AK      +              L   +  +        
Sbjct: 205 -----------------EYLDAKLRIFATQRPDDTAIVSEELRDLLSGRPFTRAGVTWYA 247

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                +     G+                 +   +   + A  V  P      R +    
Sbjct: 248 AASGFLCPRLAGVHNQANMEAAYLACRAFGVDIKLARQVFADFVPAP-----HRIQIIGE 302

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G    +D+S      +M+AAI                + G + + G+L           
Sbjct: 303 KGGVLFVDDSKATTVTAMEAAIRSFD-------RPVRLLCGGVWKGGDLEAML------P 349

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    +  V L G      + A    + V Y+ T+      I +    GD V++
Sbjct: 350 LVKEKVVAVGLFGGSREVFETAFAGVVPVRYAPTLAEAVARIYADAAPGDAVLL 403


>gi|269798175|ref|YP_003312075.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
 gi|269094804|gb|ACZ24795.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Veillonella parvula
           DSM 2008]
          Length = 456

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 93/324 (28%), Gaps = 39/324 (12%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                F + EL    L          RP  A++  I P HL+    +E   +AK  IFE 
Sbjct: 154 MPADGFLVAELSSYQL----ETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFEN 209

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              T  + LN DD     +             S     +    +      ++      + 
Sbjct: 210 QLSTDYLVLNIDDPVVADM--------EHRAPSHILKISQKKAVENGAYYADGKCYIAKD 261

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    I    + N+   L ++++  A          +     G   R       
Sbjct: 262 GVAKFVIADEDIHIPGSHNIENILTVIALSYALGVPVETIHRIISEFHGVEHRLERVKTI 321

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T  ++S   N  S+  A+    Q      G            G    +   D  E++
Sbjct: 322 DGITFYNDSKATNVDSVVKALESFDQQVILLAG------------GHDKMTPLEDFMELV 369

Query: 397 SLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
                  V   G      + A  ++    ++ + +M             GD+V++    S
Sbjct: 370 KE-KTKAVIFMGEAADRFETAAKKAGVKPIYRALSMKDAVEKGYKLAETGDIVLLSPACS 428

Query: 452 S---------NSCGFYRLINLLLE 466
           S             F R +++L E
Sbjct: 429 SFDWYSCFEERGDDFKRCVHMLQE 452


>gi|288958924|ref|YP_003449265.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
 gi|288911232|dbj|BAI72721.1| UDP-N-acetylmuramate--alanine ligase [Azospirillum sp. B510]
          Length = 472

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 120/403 (29%), Gaps = 41/403 (10%)

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
            GA ++VV++ +      + +     V  V  A  L +L            IAI G+ GK
Sbjct: 66  AGAAVIVVSSAVKRDNPEVVAARAALVPVVRRAEMLGELMRLKWA------IAIGGTHGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  M+   L         I     +              D+ + E   S         
Sbjct: 120 TTTTSMVGHMLEHANLDPTVINGGIIN---AYGSNTRLGTGDWMVVEADES-----DGTF 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +   IAV+T + P HL  +   +   +A     + +   G   L  D    + +  + 
Sbjct: 172 VKLPACIAVVTNMDPEHLDFYGTFDNARAAFDSFVQNIPFYGFAALCIDHPEVQAMIPR- 230

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------VHHGIGYHM 292
             +  + I ++G S  AD +    +   + +  +V +  +                G H 
Sbjct: 231 --VSDRRIVTYGFSPQADIRAVNVELGPDGAKYDVLIYDRHTGESRAIAGVRLPMYGPHN 288

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
            QN L    + + +         +++ F   + R         +     + + Y  +P  
Sbjct: 289 VQNSLACFAVGNEMGLPDVVMRDSMAKFQGVKRRFT----KTGEANGITVIDDYGHHPVE 344

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV- 411
           + A +      +         V                          ++ V+ +G    
Sbjct: 345 IAAVLKAAR--TAGTGRTIAVVQPHRYSRLANLFEEFCTCFNDADAVIVADVYAAGEAPI 402

Query: 412 -----LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
                 +L + L    H H    +    L   ++     GD V
Sbjct: 403 EGVSRDSLVEGLRMHGHRHVVALQNQQELAQVVREMARPGDFV 445


>gi|225378135|ref|ZP_03755356.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
 gi|225210016|gb|EEG92370.1| hypothetical protein ROSEINA2194_03795 [Roseburia inulinivorans DSM
           16841]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/402 (17%), Positives = 137/402 (34%), Gaps = 42/402 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +    A+     IP+         L ++    +       IA++G+ GKTTT  M++  L
Sbjct: 82  DNPEFAAAKEKGIPMLSRA---ELLGQIMDNYQNS-----IAVSGTHGKTTTTSMISQIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + KK             V   L  +  ++  G  ++ +S   E        RP  ++I 
Sbjct: 134 LAAKKDPTI--------TVGGILKAIDGNLRVGKSDVFISEACEYTNSFLNFRPKYSIIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  F  I +I ++     +  ++ G I +N +   ++ +        I    S 
Sbjct: 186 NIEAEHLDFFKDIHDIRNSFHLFAKNTKENGAIIINGEIENYQEIVEGLAPQVITYGMSD 245

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                        K C+  + M    +   +    +  G H   N L  + +   L    
Sbjct: 246 ACDFYPADITFNEKACANFTAMYHGEKVMDVA--LNVPGLHNVSNALAAIALALDLKISK 303

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS------ 364
           +  +  LS F   + R +   C         + + Y  +P  ++A ++   +        
Sbjct: 304 EDILAGLSAFGGADRRFQYKGCVDG----VTVIDDYAHHPTEIRATLTAAKKYPHKRLVL 359

Query: 365 ---PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-R 420
              PH   R  A L D  E+  ++    +         N       G     ++  L  +
Sbjct: 360 VFQPHTYSRTKAFLNDFAEVLSMADVVVLADIYAAREKN-----TFGISSRDIEAKLKEK 414

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
              VHY  +   +  F+  + ++GD +++      G   ++N
Sbjct: 415 GTDVHYFPSFTEIENFLLKNCINGD-LLIT----MGAGDIVN 451


>gi|121606284|ref|YP_983613.1| UDP-N-acetylmuramate [Polaromonas naphthalenivorans CJ2]
 gi|120595253|gb|ABM38692.1| UDP-N-acetylmuramate [Polaromonas naphthalenivorans CJ2]
          Length = 475

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 112/362 (30%), Gaps = 17/362 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT     ++      G     + +   ++      +  + E   
Sbjct: 121 VLAVAGTHGKTTTTAMLT---WILECAGLQPGFLIGGVPLNFGVSARLGTGNAFVIEADE 177

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I      +   +   G +  N 
Sbjct: 178 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDDLAAIERQFHHLVRTVPSQGRVVFNA 237

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           ++   + + A+                    Q         ++   V      +  +H+ 
Sbjct: 238 NEDSLQRVLAQGCWSEQVPFGGAPGHGGFTAQGEPNDFQVLKAGETVARLQWDISGMHNQ 297

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +    A      LG+     A+   +      F   + R +        G    + + + 
Sbjct: 298 LNALAAIAAAEHLGVAPEAAAEALAS------FQNVKRRMEVRGSVQRAGGPITVYDDFA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWL 406
            +P ++   I  L +           +L  + E    +       A++  SL +    + 
Sbjct: 352 HHPTAIHTTIDGLRRQLDGAGKSAERILA-IFEPRSNTMKLGTMTAQLPWSLEHADLAFC 410

Query: 407 S--GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G    A     P +     ++ +D L   ++++   GD  ++  SN  GF  +   L
Sbjct: 411 HAGGLDWDARAALAPMAERAQVADDLDQLLAQVKAAARPGDH-LLCMSNG-GFGGIHAKL 468

Query: 465 LE 466
           L 
Sbjct: 469 LA 470


>gi|153952827|ref|YP_001393592.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           kluyveri DSM 555]
 gi|219853492|ref|YP_002470614.1| hypothetical protein CKR_0149 [Clostridium kluyveri NBRC 12016]
 gi|189082874|sp|A5N4L3|MURD_CLOK5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|254766045|sp|B9DY75|MURD_CLOK1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|146345708|gb|EDK32244.1| MurD [Clostridium kluyveri DSM 555]
 gi|219567216|dbj|BAH05200.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 119/381 (31%), Gaps = 55/381 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                 A I  +TGS GKTTT  ++   L               +IG P  +        
Sbjct: 111 FIRYCPAKIYGVTGSDGKTTTTTLMYNILKKQGYKSWIG----GNIGTPLFSEVEEITPD 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T  + P +AVIT ++P HL     +EE   AK  IF+    +
Sbjct: 167 DRVVIELSSFQL-----MTMNISPEVAVITNVSPNHLDIHKDMEEYIMAKKNIFKYQSNS 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + LN D+     +  +  ALG    +S  +  N    L K   C +   +    + K 
Sbjct: 222 DLLVLNKDNELTNSMTGE--ALGKVRQFSIKEKLNKGGYLNKDSLCIDGDEVCKLSEIKL 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                           L+          ++++  +  + F   E R              
Sbjct: 280 K--------GMHNVENLLAAFCALKDDVNIESMREIATTFSGVEHRC---EFVREINGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +               +   G   +    D+        
Sbjct: 329 YYNDSIASSPTRTLAGLKAFEK-------------PVILIAGGYDKKIPFDILAEEGYSK 375

Query: 401 ISHVWLSGFHVLALKDALPR---SIHVHY----SETMDGLFLFIQSSLVDGDVVVV---K 450
           I  + L G     +K+A        HVH     + ++       +     GDVV +    
Sbjct: 376 IKTLVLMGATKYKIKEAFENLELKKHVHIPIIMANSLVEAVNSARKVSCRGDVVTLSPAC 435

Query: 451 SS---------NSCGFYRLIN 462
           +S             F  ++N
Sbjct: 436 ASFDMFANFEIRGNMFKEIVN 456


>gi|15836434|ref|NP_300958.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           pneumoniae J138]
 gi|8979275|dbj|BAA99109.1| muramoylalanine-glutamate ligase [Chlamydophila pneumoniae J138]
          Length = 417

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 104/378 (27%), Gaps = 63/378 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              V    SL IPV  V D+  AL                 ITGS GKTTT       L+
Sbjct: 72  HPWVEQAVSLKIPV--VTDIQVALKTPEFQRYPSF-----GITGSNGKTTTTL----FLT 120

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            +  T         +IG+P+        V   + E+    L         +    +V   
Sbjct: 121 HLLNTLGIPAIAMGNIGLPILDHMGQPGVR--VVEISSFQLATQEEHVPAL--SGSVFLN 176

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
            +  HL     ++    AK                      +    +     +    S G
Sbjct: 177 FSRNHLDYHRNLDAYFDAKLR-------------------IQKCLRQDKTFWVWEECSLG 217

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
            S     +  +       +   + L  +                                
Sbjct: 218 NSYQIYSEEIEEILDKGDALKPIYLHDRD----------------NYCAAYALANEVGWV 261

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
           +    L      E    R      +     I++S      +++ A+  +           
Sbjct: 262 SPEGFLKAIRTFEKPAHRLEYLGKKDGVHYINDSKATTVTAVEKALMAV-------GKDV 314

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           I +LG   + G+        LA VLS     HV   G     + DAL   I +  S+ + 
Sbjct: 315 IVILGGKDKGGDFPA-----LASVLSQTT-KHVIAMGECRQTIADALSEKIPLTLSKDLQ 368

Query: 432 GLFLFIQSSLVDGDVVVV 449
                 Q+   +GD V++
Sbjct: 369 EAVSIAQTIAQEGDTVLL 386


>gi|308271441|emb|CBX28049.1| UDP-N-acetylmuramate--L-alanine ligase [uncultured Desulfobacterium
           sp.]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 114/386 (29%), Gaps = 33/386 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +   +S+PV         +  LA   RL+     IA+ G+ GKTTT  ++   L
Sbjct: 77  ENPEVVAAAQVSVPVI----PRAEM--LAELMRLKYS---IAVAGAHGKTTTTSIVASVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +          +    +    ++ + E   S    +++      P IAV+T
Sbjct: 128 AKGGLDPTVVIGGKLKS---IDSNALLGQGNYIVAEADESDGSFLKYS-----PAIAVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +S I+ I        + +   G   L  D+ + + +  K          S 
Sbjct: 180 NIDKEHLDFYSNIDAIKDVFLNFIDRIPFYGLAVLCLDNEYVQDIIPKIKKRFTTYGMSS 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A     +        +          E+  +  G H   N L ++ +   L    
Sbjct: 240 QAVFQAKNVSIEGLISK---FKVCYNGNTLGEISLNLPGIHNVYNSLASIAVGMELDIPF 296

Query: 311 DTAIKALSVFHPKEGR------GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           D   +AL      + R       +      + G       +             V+    
Sbjct: 297 DIIKEALENMQGVQRRLEIKGEVRGITVVDDYGHHPTEIRTTLQAAKDCWPDRRVIVVFQ 356

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
           PH   R  A+  D       S    I          I      G     L + +    H 
Sbjct: 357 PHRYSRTKALFDDFTRAFYQSDHLIILPIYPAGEKEIE-----GIDSKFLCEEIAAHGHK 411

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVV 448
              Y   M+    +++  L   D+++
Sbjct: 412 EAVYMNDMESAVEYLKDKLNKNDILL 437


>gi|197287210|ref|YP_002153082.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Proteus mirabilis HI4320]
 gi|227357096|ref|ZP_03841466.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
 gi|194684697|emb|CAR46660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Proteus mirabilis
           HI4320]
 gi|227162788|gb|EEI47751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Proteus mirabilis ATCC 29906]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMLA---WILEDCGYQPGFLIGGVPGNFQVSAQLGESPFFVIEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   ++  +   H   F  +  I      +   +  +G I +  
Sbjct: 162 YDSAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLTAIQKQFHHLVRIVPGSGKIIMPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   +              +S  +        +  K  ++ S   V  +G+ +  V  G
Sbjct: 222 NDLNLK-------QTIGMGCWSEEEYTGETGDWQAKKISNDSSHFAVFHKGEQVGEVCWG 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +         +   + +     +     A         +    R  L           Y+
Sbjct: 275 LSGEHNMQNGLMAIVAAHHVGVLPVDACAA------LNKFINARRRLELRGEVNQVSVYD 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHV 404
                  A ++ L  +     G    +      +   S +  + +++     +L     V
Sbjct: 329 DFAHHPTAILATLEALRSKVGGTARII----AVLEPRSNTMKMGISKDDIAPALGRADEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    ++  L   +         +S  +D L   +      GD +++  SN  GF  + 
Sbjct: 385 FLFQPPNIQWLVSDIAEKCVQPARWSTDIDTLVEMVAKEAKPGDHILI-MSNG-GFGGIH 442

Query: 462 NLLLEE 467
             LL +
Sbjct: 443 EKLLAK 448


>gi|206575746|ref|YP_002240440.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
 gi|206564804|gb|ACI06580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Klebsiella
           pneumoniae 342]
          Length = 438

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDTDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG     D       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVR--------GADDRCISFG----VDVGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLQL-----DGTLYLLLG-----GDGKSADFTPLKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I S +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELAELRPDV--AVQTETMEQAMRQIASLVKAGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDIFARLAKEL 437


>gi|317402452|gb|EFV83021.1| UDP-N-acetylmuramate-L-alanine ligase [Achromobacter xylosoxidans
           C54]
          Length = 468

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 135/412 (32%), Gaps = 46/412 (11%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  +V +T +      +       IPV         +  LA   RL+     IA+ G+ 
Sbjct: 64  GADAIVTSTAVAGDNPEVIAARAARIPVV----PRAIM--LAELMRLKRG---IAVAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L++       +     +       AR+    D+ + E   S    +  
Sbjct: 115 GKTTTTSLVASILAAGDLDPTFVIGGRLNS--AGANARLGQG-DYIVVEADESDASFLNL 171

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L     P +A++T I   H+  +    ++A  K+   E  ++          +    ++ 
Sbjct: 172 L-----PVMAIVTNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSAVLCTDDANVRE 224

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------VHHGIGY 290
               +            N D  +R ++  ++ + M   +Q    +          +  G 
Sbjct: 225 IMPFVSRPIT---SYGLNEDAMVRGYEVQADGTRMRFNVQRSHRDTLLPPLQVELNLPGL 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N L  + + + L    +    AL+ F     R  +               +   + 
Sbjct: 282 HNVRNALAAIAVATELGVSDEAIRDALASFKGVGRRFTQTGEFPVPAVHGGGTFTVIDDY 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLS 407
                 ++     +      R  VL         ++    D   VL   +   ++ V+ +
Sbjct: 342 GHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADAVLLTEVYAA 401

Query: 408 GF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
           G          AL  AL  +  V   + E +  L   +   + DGDVV+V  
Sbjct: 402 GEPPLVAADGRALSRALRVAGKVEPVFVEDVADLPQAVVDFVRDGDVVIVMG 453


>gi|197105787|ref|YP_002131164.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
 gi|226722943|sp|B4RFS2|MURD_PHEZH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|196479207|gb|ACG78735.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Phenylobacterium
           zucineum HLK1]
          Length = 469

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 114/409 (27%), Gaps = 55/409 (13%)

Query: 83  IPVFGVDDVLGALNKLA----------VAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            P + V+    A  ++            AA    +  I+AITG+ GK+TT  ++    + 
Sbjct: 81  APHWTVERAREAGAEIVGDIELFARTVNAAPEHKRPKIVAITGTNGKSTTTALIGHICAE 140

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
             +          +IG  +            + EL    L     L       + VI  I
Sbjct: 141 AGRDVRIG----GNIGYGVLGLEDMHGGAVYVLELSSYQLDLTSSLHA----DVTVILNI 192

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT--IYSF 250
           +P HL     ++E  +AK  I     K  T  +  DD + + +  +  A   +T    S 
Sbjct: 193 SPDHLERHGTMDEYVAAKRRILLNQGKGDTAVIGVDDPWGQRICTEITAANRRTIVPVSA 252

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K+ +                   ++          G                  ++   
Sbjct: 253 SKAMSRGVYALDGLLYDATGERAQEVADLKRARSLPGRHNWQNAAAAYAAARGLGISG-- 310

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               +A        G   R       G    +++S   N  + + A+S   +      G 
Sbjct: 311 ---EEAAQHLMTFPGLAHRMETVAVLGKVRFVNDSKATNADAARQAMSSYPKFYWIAGGL 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                G +  + +L                I   +L G    A  D L        S T+
Sbjct: 368 PKT--GGIDGLIDLFPR-------------IEKAYLVGEAAPAFADVLRGKAPAVESGTI 412

Query: 431 DGLFLFIQSSLVD---GDVVVV---KSS---------NSCGFYRLINLL 464
           +       +         +V++    +S             F   +  L
Sbjct: 413 EAAVRQAYADARAAGQEAIVLLSPACASFDQFADFEERGEAFRAAVQKL 461


>gi|152980991|ref|YP_001354657.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
 gi|151281068|gb|ABR89478.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Janthinobacterium sp. Marseille]
          Length = 457

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 96/363 (26%), Gaps = 20/363 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  ML   L          IG    + G+   L+    +  F + E  
Sbjct: 105 VLAVAGTHGKTTTSSMLAWILEDAGYDPGFLIGGVPMNFGISARLSGSGKESSFFVIEAD 164

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                               A++  +   H   F  +  I +    +   +   G +  N
Sbjct: 165 EYDTAFFDKRSKFVHYHAKTAILNNLEYDHADIFPDLHAIETQFHHLVRTVPGVGRVIAN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             ++  + +  +      +          A      +                + E    
Sbjct: 225 GREASLQRVLQRGCWSESEWFGGKEGWSLATHDDGNFDVIFNGELQGTVQWSLTGEHNRM 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                +A    + +     +      A+        +       +       F     + 
Sbjct: 285 NALAAIAAARHVGVLPAQAI-----AALGQFENVKRRMELRGTVKDIAVYDDFAHHPTAI 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                 ++  +     ++          LG M E    S      +    +  N      
Sbjct: 340 ATTVEGLRKKVGKARILAVLEPRSNTMKLGTMKEALPGSLVDADLIFGYGASGN------ 393

Query: 407 SGFHVL--ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
            G   L   L +AL            +  L   I  S   GD V+V  SN  GF  +   
Sbjct: 394 -GKDALGWDLAEALAPLGEKARSFNDLPTLVQAIAQSAQAGDQVLV-MSNG-GFGGVHQK 450

Query: 464 LLE 466
           +L+
Sbjct: 451 ILD 453


>gi|152968673|ref|YP_001333782.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330012009|ref|ZP_08307226.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
 gi|150953522|gb|ABR75552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|328533998|gb|EGF60650.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Klebsiella sp.
           MS 92-3]
          Length = 438

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 130/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDTDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            D       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCISFGV------------DVGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLQL-----DGTLYLLLG-----GDGKSADFTPLKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELAELRPEV--AVQTETMEQAMRQIAPLVKAGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGEMFARLAKEL 437


>gi|281424941|ref|ZP_06255854.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
 gi|281400785|gb|EFB31616.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris F0302]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 102/352 (28%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKN--YGTNYILSDSSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +             I       
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT------ELIQPGGALI 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ K H      +Y + +               E S+  V        +       
Sbjct: 222 IHRDLEMKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDFVSPIENVKNIKLGQPVP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKNDKHVFLSDYGHHPKEVL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S ++   +        +GR+I V+     +   ++ F+ + A+ L   N   V L+   
Sbjct: 342 QSARSLKELF-------KGRKITVMFQPH-LYTRTRDFYHEFADAL--SNFDEVVLTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L   +        D +  +++S   D DV+VV  
Sbjct: 392 PAREEPIEGVTSKLIFDNLKPGVEKTIIR-KDDVLDYVKS--RDFDVLVVLG 440


>gi|227544876|ref|ZP_03974925.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300909904|ref|ZP_07127364.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
 gi|68160890|gb|AAY86891.1| lr1633 [Lactobacillus reuteri]
 gi|227185150|gb|EEI65221.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri CF48-3A]
 gi|300892552|gb|EFK85912.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           reuteri SD2112]
          Length = 456

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 121/410 (29%), Gaps = 47/410 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV    +     L          +    +L           ++++TGS GKTTT   LT
Sbjct: 75  VVVKNPGIPYDNPLVAAFVKQGTPIITEAELGWQI---FDGHLVSVTGSNGKTTTTT-LT 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             + +    Y    + N  I        +  D D  + EL    L         + PHIA
Sbjct: 131 QLMIAENAKYQVKYAGNIGISFSKIAEDLGPD-DTLVTELSSFQLLGA----PTIHPHIA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      E   +AK  I     K   + +N+D   ++ +  +S A      
Sbjct: 186 IITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWDRDEWQKIAQRSQAT----- 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   +           E   +  + Q          IG    +N L  +    +  
Sbjct: 241 ----IVPFSRLNKSHEGSYVEDGMIYWRGQEVMPTKDIRLIGPQNVENALAAIAAAKLSG 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   K L+ F     R    +  +        ++S + +  + + A+    +     
Sbjct: 297 VTNDAIKKVLTTFSGVRHRL---QYVMEYQERLFYNDSKSTDIEATEVALQGFDRPVVLL 353

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHY 426
            G            G         L       ++  + + G     +KDA  +  + V  
Sbjct: 354 AG------------GLDRGYTFERLVPYFKK-HVKAMIVFGECKDKMKDAGNQAGVPVIE 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           SE               GDV+++    +S             F   +  L
Sbjct: 401 SENAITAVPEAWKLSEPGDVILLSPANASWDQFPSFEVRGDKFIEAVEKL 450


>gi|253991523|ref|YP_003042879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|211638401|emb|CAR67023.1| udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelat
           ligase (ec 6.3.2.-) [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782973|emb|CAQ86138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photorhabdus asymbiotica]
          Length = 463

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 115/364 (31%), Gaps = 26/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +      +    +  F + E   
Sbjct: 112 VLAVAGTHGKTTTAGMLA---WILEACGYKPGFLIGGVPGNFETSAQIGESPFFVIEADE 168

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   ++  +   H   F  +  I      +   +  +G IF   
Sbjct: 169 YDSAFFDKRSKFVHYSPRTLIMNNLEFDHGDIFGDLAAIQRQFHHLVRIVPGSGKIFAPD 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + +      ++ +   G  +       K        +          EV    
Sbjct: 229 NDINLKQVLSMGCWSELEQVGETGSWQA------KKISTDSSDYRVFYCGEVVGEVNWSL 282

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N L+ +     +      A +ALS F     R +       Q     + + + 
Sbjct: 283 VGEHNMRNGLIAIAAAHHVGVQPTDACRALSDFINARRRLE----LRGQENGVTVYDDFA 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
            +P ++ A +     +     G    +   + E    +    I   E+         V+L
Sbjct: 339 HHPTAILATLEA---LRSKVGGTARII--TVLEPRSNTMKMGISKNEIAPALGRADEVFL 393

Query: 407 SGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               ++      +        ++S  +D L   I      GD ++V  SN  GF  +   
Sbjct: 394 FQPANIKWHVSEIADHCVQPAYWSADIDSLVNMIVDKAQQGDHILV-MSNG-GFGDIHEK 451

Query: 464 LLEE 467
           LL +
Sbjct: 452 LLSK 455


>gi|22297914|ref|NP_681161.1| UDP-N-acetylmuramate--L-alanine ligase [Thermosynechococcus
           elongatus BP-1]
 gi|34222674|sp|Q8DLV5|MURC_THEEB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|22294092|dbj|BAC07923.1| UDP-N-acetylmuramate-alanine ligase [Thermosynechococcus elongatus
           BP-1]
          Length = 475

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/396 (15%), Positives = 112/396 (28%), Gaps = 37/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +     +   L  P+F   DVL AL       R +S    IA+ G+ GKTTT  M
Sbjct: 78  SAIRSDNPEYLAAQHLGCPIFHRSDVLAAL-----MHRSQS----IAVAGTHGKTTTSSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L                               + + E   S             PH
Sbjct: 129 IAYLLLQAGLD---PTIIVGGEVAAWQGNARVGQSRYLVAEADES-----DGSLRKFHPH 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VIT I   H  +++ +EE+ +   +  +  E                ++ + H   + 
Sbjct: 181 IGVITNIELDHPDHYNSLEEVVATFQQFADQAEIVIACA------DCPNIRDRLHHPRLL 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T     ++                +    +       +  + +G H  QN L  + +   
Sbjct: 235 TYSLQRQAAVDYCVDHIQYTAEGTTARVWERGTSLGILQLNVLGAHNLQNALAVIAVGRY 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L  D  T   AL  F     R +               + Y  +P+ + A +        
Sbjct: 295 LGIDFATIAAALLEFRGARRRFEERGQVNGIR----FIDDYAHHPSEIMATLEAARLQVG 350

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVWLSGFH-------VLALK 415
                +  V          +Q+      +          + ++ +G              
Sbjct: 351 TQTPWQRIVAVFQPHRYSRTQTLLKAFGQCFTAADHVIFTDIYSAGEPDPGTISGADVAT 410

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            A      V Y  T++ +   +   L  GD+V+   
Sbjct: 411 CARQYHASVDYCPTLEAVQTRLAHLLQPGDLVIFLG 446


>gi|171742535|ref|ZP_02918342.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283456379|ref|YP_003360943.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
 gi|171278149|gb|EDT45810.1| hypothetical protein BIFDEN_01648 [Bifidobacterium dentium ATCC
           27678]
 gi|283103013|gb|ADB10119.1| mur UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-- lysine ligase
           [Bifidobacterium dentium Bd1]
          Length = 521

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 76/238 (31%), Gaps = 46/238 (19%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHY-----DGHDFIL 58
           WT       + G          V  I+ D+R + P    F   KG  +     DG D   
Sbjct: 32  WTLD--ASDLPG------ANEPVGSITYDTRKVEPGSMLFV--KG-RFKPEFLDGID--- 77

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
               KG    V  T+      ++      V+DV  A++ L+ A     +++ T+I ITG+
Sbjct: 78  ---GKGLAAYVAETEYADRTKAIG---IIVEDVHKAMSLLSAAFYGMPQNELTVIGITGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPL--------------TLARMPVDV 160
            GKTTT  +    L+                  G  +               + R   D 
Sbjct: 132 KGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADN 191

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG 216
                 + +S         H +   +     I+P H+S+      E+    K  +   
Sbjct: 192 GMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN 249


>gi|158522611|ref|YP_001530481.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
 gi|158511437|gb|ABW68404.1| UDP-N-acetylmuramate [Desulfococcus oleovorans Hxd3]
          Length = 474

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/379 (12%), Positives = 96/379 (25%), Gaps = 26/379 (6%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A+         ++ + G+ GKTT   +L   L S     + +              R+  
Sbjct: 107 AIQHFAAKDREVLLVCGTHGKTTASSLLAWMLYSAGLDPSFVIGGVVKD--FGGNYRLGK 164

Query: 159 DVDFGIFELGMSHLGEIRF-LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                I           +       RP +A++T +   H   F+    +     +   GL
Sbjct: 165 GRHMVIEGDEYDTAFFDKRSKFFHYRPKVAILTGVEFDHADIFADFGAVRKTFDKFIGGL 224

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIK---TIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                +     D     L                S  +      Q               
Sbjct: 225 LPESLLLAFDSDPVVRDLVKGRACNVKMYGNRDDSAWRLGRVTLQPPASVVEMICGDAVF 284

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                 +   ++ +    A     ++G+ +            +       G  +      
Sbjct: 285 GTFETRLIGRYNLLNALAAAAAAHSVGVPAEEIKKALATFSGVRRRQEVRGVVRGVTVMD 344

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +         +  A          +++   P        V           Q  +    +
Sbjct: 345 DFAHHPTAVAATIAGVRPFYPEGRLIAVFEPRTNTSMRNVF----------QQDYAKAFD 394

Query: 395 VLSLYNISHVWLSGFHVLALK--------DALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           +  +  +S V L       ++        D +      +  +  D +  F++     GDV
Sbjct: 395 LADMVCVSRVPLPEKVPEGMRFSSQQLADDLIKSGKEAYCFDGADAIVDFLKGRAAAGDV 454

Query: 447 VVVKSSNSCGFYRLINLLL 465
           V+V  SN  GF  +   LL
Sbjct: 455 VLV-MSNG-GFDNIHEKLL 471


>gi|225850494|ref|YP_002730728.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
 gi|254766015|sp|C0QPY2|MURC_PERMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225645302|gb|ACO03488.1| UDP-N-acetylmuramate--alanine ligase [Persephonella marina EX-H1]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 79/438 (18%), Positives = 139/438 (31%), Gaps = 53/438 (12%)

Query: 49  PHYDGHDFI--LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLR 105
            + DG D +    AV++       +   +     L IP           L +L       
Sbjct: 61  KNVDGADVVVYSSAVKQ-------DNPELLRAKQLGIPTI----PRGEMLAELMRFKYG- 108

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAI GS GKTTT  M+   L         +                    DF + 
Sbjct: 109 -----IAIAGSHGKTTTTSMVGTILGKTGYDPTVVIGGKLE---AYGSNAKLGSGDFIVT 160

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S           + P I  I  I   H+  +  + +I  A  +    +   G + +
Sbjct: 161 EADES-----DGSFLKLTPTIVSINNIDLEHIGFYKNLNDIKRAFIDFANKVPFYGAVAV 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD               K I  FG S+++D +    +  + +   +V       E+  
Sbjct: 216 NIDDQN----IKDIIPEIEKKIIRFGISEDSDIRGYDLRLENGRYRFKVND---FGEIYL 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I   L        +AL  F          R  +       + + 
Sbjct: 269 SIPGKHNVYNALAAISISVELGVPFCVIKEALENFK-----NANRRFEIKYDGSVTVIDD 323

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHV 404
           Y  +P  +KA +S   ++      R IAV          S   H      +  +  I+ +
Sbjct: 324 YAHHPTEIKATLSATREM--FDGRRIIAVFQPHRYSRTFSLYDHFVRSFNIPDITVITEI 381

Query: 405 WLSGF------HVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-NSC 455
           + +G       +   L   + +     V Y E +   F  +++ L   DV+++  + N  
Sbjct: 382 FPAGESPIDSVNGEKLSSDIKKETGKTVLYGEDLQKTFNILKNILKKDDVLLILGAGNVT 441

Query: 456 GF-YRLINLLLEEFPAIQ 472
               ++   L  +  A++
Sbjct: 442 RLSDQISQFLKNKEGALR 459


>gi|262195186|ref|YP_003266395.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
 gi|262078533|gb|ACY14502.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Haliangium
           ochraceum DSM 14365]
          Length = 490

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 100/344 (29%), Gaps = 19/344 (5%)

Query: 96  NKLAVAAR-LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
            ++ +A R L  +A +IAITG+ GK+TT  +      +     A       ++G    + 
Sbjct: 101 AEIELAYRCLHPEAQLIAITGTNGKSTTTALTGALCQAASDAGAPPTFCGGNLGNHPLIE 160

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    +     +     G +       RP++A    I   HL  +  ++  AS K  ++
Sbjct: 161 AVDHPANTAGGFVVAEVAGFMLETCAGFRPNVAACLNITEDHLDRYGTMDVYASMKTRVY 220

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                      N        L     A G   ++                   ++  +  
Sbjct: 221 RWQRADDFAIANAH--CARTLAGAQAAAGRVLVFDAEAPLPPGTCGAYLSPERDEIVLRP 278

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +  G         +      N+   +           +     +       +  R     
Sbjct: 279 EADGPEHRFPAADLPLIGQHNLENAMAAYLAAHLVGVSDDAIRAGARSFRPQKHRMERVG 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
            +G     D+S   N A++ A++              + + G + + G  +  F      
Sbjct: 339 EKGEVVFYDDSKGTNVAAVAASMRGF-------PRPAVLIAGGVDKGGSYAPMF------ 385

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFL 435
                    + L G     ++ A   +     V  +E+M+    
Sbjct: 386 EALRDVARGLVLIGEARPLIRAAASEAGAAYPVVDAESMEDAVR 429


>gi|311115069|ref|YP_003986290.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
 gi|310946563|gb|ADP39267.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Gardnerella vaginalis ATCC 14019]
          Length = 597

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 32/284 (11%)

Query: 28  NGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG 87
           N I+ DSR I      F IKG ++   +++  A + G    V          ++      
Sbjct: 78  NHITYDSRDIKKNTLLF-IKG-NFKP-EYLKDADKNGLTTYVAEQSYADYTNAVG---LI 131

Query: 88  VDDVLGALNKLAVAARLRSKATI--------------------IAITGSVGKTTTKEMLT 127
           V DV  A++ L+       +  +                    I    S GK      + 
Sbjct: 132 VTDVRKAMSLLSSEFFGNPQERLRVIGITGTKGKTTTAYFTHAILNEHSEGKAALFSSVD 191

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L       + + +  +     +    +   + + + E+  S         + +  ++A
Sbjct: 192 NCLDGKTYVESNLTTPESLDAFRMMSQAVKNGMKYLVMEV--SSQAYKVERVYGLHFNVA 249

Query: 188 VITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
               I+P H+S       E+    K +I +  +                L+   +     
Sbjct: 250 AFLNISPDHISPIEHPTFEDYLYCKRQIVKNTDALILNADCAHADLI--LQDAQNEYVDV 307

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           T +S  + +     +   + CS+ S +    + +    +     
Sbjct: 308 TTFSRVRKEEMGENICNCQACSDHSDIHPYEKSEKYPELIWTKY 351


>gi|312898962|ref|ZP_07758350.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
 gi|310620124|gb|EFQ03696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megasphaera
           micronuciformis F0359]
          Length = 454

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 90/317 (28%), Gaps = 40/317 (12%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     LT  ++   AVI  + P HL     +E    AK  IF   +K   
Sbjct: 163 VVAELSSFQL----ELTSSLKAKSAVILNLTPDHLDRHHTMEAYGEAKKRIFLNQDKNDY 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDDS    + +      +              ++      ++ +         +  
Sbjct: 219 AILNYDDSAVRAMASDLSGTVLYISV--------HGEVPVGAFAADGNLYIRMEGKDTCL 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                +      N+   L    +      +      V     G   R     +       
Sbjct: 271 CKETDLHLFGKHNIQNCLAAALLTYCAGASIDVIRRVLTEFRGVEHRLEWVRDVKGVPYY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  + + A+           G  I + G   +M +L+          L+   + 
Sbjct: 331 NDSKGTNTDASEKALEAF-------SGHLILIAGGHDKMTDLTSFM------KLAARKVD 377

Query: 403 HVWLSGFHVLALKDALPRS--IHVHYSE-TMDGLFLFIQSSLVDGDVVVV---KSS---- 452
            + L G      +    ++    +     +M+        +   G  V++    SS    
Sbjct: 378 TLILVGEAADRFEAEARKAGMKDIRRVGFSMEKAVRTAYETAEKGQTVLLSPACSSYDMY 437

Query: 453 -----NSCGFYRLINLL 464
                    F +++  L
Sbjct: 438 HHFEERGDDFKKIVKSL 454


>gi|260576892|ref|ZP_05844875.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
 gi|259020929|gb|EEW24242.1| UDP-N-acetylmuramate/alanine ligase [Rhodobacter sp. SW2]
          Length = 479

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 84/468 (17%), Positives = 143/468 (30%), Gaps = 68/468 (14%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG-AG 66
            ++L  +     G       + I  D R ++    FF  +G           A   G A 
Sbjct: 28  AEVLMTLGYRVQG--SDAKASKI-TD-RLVSLGATFF--EGQR---------AANLGEAA 72

Query: 67  LVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           +VV++         +         V  V  A   LA   RL+S    IAI G+ GKTTT 
Sbjct: 73  VVVISSAIKKGNPELEEARRRQLPV--VRRA-EMLAELMRLKSN---IAIAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   L             N  +           + ++ + E   S         + + 
Sbjct: 127 TMVATLLDK---GGFDPTVINGGVIHAYGSNARAGEGEWMVVEADES-----DGSFNRLP 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA++T I P H+ ++   E +     +    +   G      D +  + L  +     
Sbjct: 179 ATIAIVTNIDPEHMEHWGTFENLRKGFYDFVSNIPFYGLAVCCTDHAEVQALVGRVTDR- 237

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME----------VVHHGIGYHMA 293
              I +FG +  AD +       +  +  +V LQG+  +                G H  
Sbjct: 238 --RIVTFGFNAQADVRAINLTYDAGVAHFDVALQGEGPDDTGKIAVIEGCTLPMPGDHNV 295

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L        +AL+ F     R  R            I + Y  +P  +
Sbjct: 296 SNALAAIAVARHLGMKKAEIREALAGFAGVNRRFTRVGVVNG----VTIIDDYGHHPVEI 351

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV------LSLYNISHVWLS 407
            A +    Q +    G R+  +             H    +         +  I+ V+ +
Sbjct: 352 AAVLRAARQATAGTPGARVIAV----HQPHRYTRLHSLFDDFCTCFNEADVVAIAEVYAA 407

Query: 408 GFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           G           L   L    H H       D L   ++     GD+V
Sbjct: 408 GEDPIPGASRDDLVAGLIAHGHRHARAILNEDDLERLVREQARPGDMV 455


>gi|306818516|ref|ZP_07452239.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           mulieris ATCC 35239]
 gi|304648689|gb|EFM45991.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           mulieris ATCC 35239]
          Length = 505

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 126/407 (30%), Gaps = 36/407 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAI 113
              AV+ G  L +V+  +        +    V   + +  +LA   +  S       + I
Sbjct: 67  AQAAVEAGHKLFIVSPGIPPHNPLYRLS--AVAAPVWSEVELAWQIQQESSNRGCKWLCI 124

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKTTT  ML   L +       + +   + G P+        VD    EL    L 
Sbjct: 125 TGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVVAEGAVDALAVELSSFQLH 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-- 231
                T  V+P  +V    AP H+      +E A  K++I+ G++      +  +     
Sbjct: 181 ----STFSVQPWASVWLNFAPDHIDWHGSADEYAWDKSKIYRGVQHAAFYPVTEELPTKV 236

Query: 232 --FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L  +        I   G     D  L      S+ +   ++L   +      G  
Sbjct: 237 LAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRAFTSDPAKQALELARFADLEHLTGQP 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              +  +  TL    +  A     +         E    R          + ID+S   N
Sbjct: 297 TPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFELEHHRRAPVGVFDGVSYIDDSKATN 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +        + +    +   + ++G     G+        L ++++   +    L G 
Sbjct: 357 THA------AAASLRDVADKHAVWIVG-----GDPKGQDFHQLVKLVAP-KVKAAVLIGL 404

Query: 410 HVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV 449
                + A  ++      +        M+            GDVV++
Sbjct: 405 DPEPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAASGDVVLL 451


>gi|189423738|ref|YP_001950915.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter lovleyi SZ]
 gi|229620044|sp|B3E3Y1|MURC_GEOLS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189419997|gb|ACD94395.1| UDP-N-acetylmuramate/alanine ligase [Geobacter lovleyi SZ]
          Length = 456

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 113/392 (28%), Gaps = 36/392 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V       +PV         +  LA   R++     IAI G+ GKTTT  M
Sbjct: 72  TAVQSDNPEVIEAKHRMVPVI----PRAEM--LAELMRMKYG---IAIAGTHGKTTTTSM 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+        +     +    L          F + E   S           + P 
Sbjct: 123 VATVLTHAGIDPTIVIGGKLNT---LGSNAKLGQGKFLVAEADES-----DGSFLTLSPT 174

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           IAV+T I   HL  +  G+E+I          +   G   L  +D     +  +      
Sbjct: 175 IAVVTNIDADHLDYYTGGLEQIKDTFVSFINKVPFYGLAVLCQEDRNINEIIPRIKK--- 231

Query: 245 KTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
               ++G S  AD +    K    + ++       +  E+  +  G H   N L    + 
Sbjct: 232 -RFMTYGLSSQADLRATHVKLDGFQTTFTAHYKGYRLGEISFNMPGAHNVLNALACTAVA 290

Query: 304 SILTADVDTAIKALSVFHPKEGRG------KRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    D   +  + F     R              + G       +      +     
Sbjct: 291 LELDVPFDKIQEGFAQFGGVGRRFTVKGEKNGIMVVDDYGHHPAEIRATLGAARNGWPER 350

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            ++    PH   R   +  +       +    +      S   I      G     L + 
Sbjct: 351 RLVVAFQPHRYSRTKELFNEFVTCFYDADVLVLTDIYAASEQPI-----PGVSAERLAEE 405

Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
             R     V Y    + L  ++   + +GD+V
Sbjct: 406 TRRHGQRDVTYIADRNDLPDYLAGIVKEGDIV 437


>gi|62185436|ref|YP_220221.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydophila
           abortus S26/3]
 gi|81174946|sp|Q5L521|MURD_CHLAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62148503|emb|CAH64274.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Chlamydophila abortus S26/3]
          Length = 420

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/412 (16%), Positives = 117/412 (28%), Gaps = 79/412 (19%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            +   V       IP+  V D+  A        R       + +TGS GKTTT   L   
Sbjct: 71  TSHPFVVEAKHRGIPI--VTDIQLAFQDP-EFHR----YPSLGVTGSAGKTTTVLFLVHL 123

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L S+  +         +IG P+    +      GI  + +S          +     A I
Sbjct: 124 LRSVGMSAC----AMGNIGFPI----LQAMYQKGIRVVEISSFQLAEQEIEIPVLSAAAI 175

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+  HL     ++    AK+                             +L +    S
Sbjct: 176 LNISENHLDYHYTLQAYTEAKS-------------------HIAKCLQSPESLWVGDGVS 216

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FGKS     +          +   + L  ++                    G        
Sbjct: 217 FGKSYLEATREINLVLDKGSALKPLYLHDRN----------------NYCAGYALANEVT 260

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  L      +    R      +     I++S     +S++ A+  + +       
Sbjct: 261 KIPLESFLQAVLTFDKPPHRIEYLGEKDGVRYINDSKATTMSSVEKALIAVKE------- 313

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I +LG     G    S    L  VL+   + HV   G     +  AL   ++ +  ++
Sbjct: 314 NIIVILG-----GRNKGSNFASLIPVLTQT-VKHVVAMGECRTEIAQALSSSNLPLTQAQ 367

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI---NLLL 465
            +       QS    GDV+++    +S             F +L+     L 
Sbjct: 368 DLQEAVHVAQSIAQPGDVILLSPGCASFDQFRSFEERGDCFKQLVGEMEALK 419


>gi|307700915|ref|ZP_07637940.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris FB024-16]
 gi|307613910|gb|EFN93154.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris FB024-16]
          Length = 505

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 126/407 (30%), Gaps = 36/407 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAI 113
              AV+ G  L +V+  +        +    V   + +  +LA   +  S       + I
Sbjct: 67  AQAAVEAGHKLFIVSPGIPPHNPLYRLS--AVAAPVWSEVELAWQIQQESSNRGCKWLCI 124

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKTTT  ML   L +       + +   + G P+        VD    EL    L 
Sbjct: 125 TGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVVAEGAVDALAVELSSFQLH 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-- 231
                T  V+P  +V    AP H+      +E A  K++I+ G++      +  +     
Sbjct: 181 ----STFSVQPWASVWLNFAPDHIDWHGSADEYAWDKSKIYRGVQHAAFYPVTEELPTKV 236

Query: 232 --FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L  +        I   G     D  L      S+ +   ++L   +      G  
Sbjct: 237 LAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRAFTSDPAKQALELARFADLEHLTGQP 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              +  +  TL    +  A     +         E    R          + ID+S   N
Sbjct: 297 TPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFELEHHRRAPVGVFDGVSYIDDSKATN 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +        + +    +   + ++G     G+        L ++++   +    L G 
Sbjct: 357 THA------AAASLRDVADKHAVWIVG-----GDPKGQDFHQLVKLVAP-KVKAAVLIGL 404

Query: 410 HVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV 449
                + A  ++      +        M+            GDVV++
Sbjct: 405 DPEPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAASGDVVLL 451


>gi|306822448|ref|ZP_07455826.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
 gi|304553993|gb|EFM41902.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Bifidobacterium dentium ATCC 27679]
          Length = 521

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 76/238 (31%), Gaps = 46/238 (19%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHY-----DGHDFIL 58
           WT       + G          V  I+ D+R + P    F   KG  +     DG D   
Sbjct: 32  WTLD--ASDLPG------ANEPVGSITYDTRKVEPGSMLFV--KG-RFKPEFLDGID--- 77

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
               KG    V  T+      ++      V+DV  A++ L+ A     +++ T+I ITG+
Sbjct: 78  ---GKGLAAYVAETEYADRTKAIG---IIVEDVHKAMSLLSAAFYGMPQNELTVIGITGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYA--CIGSYNNHIGVPL--------------TLARMPVDV 160
            GKTTT  +    L+                  G  +               + R   D 
Sbjct: 132 KGKTTTAYLAHAILNEYSHGRCALFSSVNLCLDGHTMLASKLTTPESLDAFRMMREAADN 191

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG 216
                 + +S         H +   +     I+P H+S+      E+    K  +   
Sbjct: 192 GMRYLVMEVSSQAYKVNRVHGLTFDVGAFLNISPDHISDIEHPTFEDYFRCKRRLIAN 249


>gi|253690076|ref|YP_003019266.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756654|gb|ACT14730.1| UDP-N-acetylmuramate [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 461

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 114/365 (31%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T         Y          G     AR+  D  F + E   
Sbjct: 105 VIAVAGTHGKTTTAGMVT--WILEDCGYQPGFVIGGVPGNFTVSARLG-DSPFMVLEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  ++ I      +   +  +G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGKIILPT 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + +            +S  +    +   R  K   + S  +V L  + +  VH  
Sbjct: 222 NDLNLKQVM-------GMGCWSEQELVGEEGTWRAQKVSIDASQYQVYLNNELVGEVHWK 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      +    L  ++           A           +R      +   T+ D+   
Sbjct: 275 LVGEHNMH--NGLMAIAAAHHVGVLPADACRALGGFINARRRLELRGTEHGVTVYDDF-- 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           A+  +   A     +    G  R +AVL    +  ++G         L           V
Sbjct: 331 AHHPTAILATLSALRSKVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  + 
Sbjct: 385 FLFQPAHIPWQVVEVAEACVQPAHWSADIDTLVENIVKTAQPGDHILV-MSNG-GFSNIH 442

Query: 462 NLLLE 466
           N LL+
Sbjct: 443 NKLLD 447


>gi|327538738|gb|EGF25388.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase
           [Rhodopirellula baltica WH47]
          Length = 660

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAIT 114
           I  A+ +GA  ++    + A      IP   V D   AL ++      R    +  I I 
Sbjct: 159 ISQALARGAAGILTEQILPAP-----IPQAIVADTDRALAEIRSNQTDRPDQKLITIGIV 213

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS 142
           GS GKT T  +    L  I    A    
Sbjct: 214 GSAGKTITSFLTASVLRDIPCRVAYQTD 241


>gi|255536695|ref|YP_003097066.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
 gi|255342891|gb|ACU09004.1| UDP-N-acetylmuramate--alanine ligase [Flavobacteriaceae bacterium
           3519-10]
          Length = 458

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 101/413 (24%), Gaps = 44/413 (10%)

Query: 67  LVVVNTDMVA------SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           L+VV+T +            L IP+    ++L A+ K             IA+ G+ GK+
Sbjct: 75  LIVVSTAIEDTVFEVQKARELGIPIVKRSELLAAIAK---------SKKTIAVGGTSGKS 125

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFGIFELGMSHLGEIRFL 178
           TT  ML   L       + I        +             ++ I E   S        
Sbjct: 126 TTSAMLYQILLDAGFDPSIISGAGLTSIIRQGKIGNAAVGKGEWLIIEADES-----DGS 180

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +P I ++  I   H       E I                   N          A 
Sbjct: 181 IIQYQPEIGLLLNIDKDHQEI---DELITLFSEFKSNTNSLFVVNQSNTLAKSLSANAAN 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                        ++   D  L  ++   ++  M    +             H     L 
Sbjct: 238 DFGFEDANAGYSAENFKQDGLLMTFELRGQKFKMNSLGRHSVENAAAAIAVAHQIGVDLN 297

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
           T          +    + L   +                      +       +      
Sbjct: 298 TSAESLAKYEGIYRRHQILGQKNGVWVIDDYAHNPAKCAASIRACQPLADKVIAW----- 352

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL----AEVLSLYNISHVWLSGFHVLAL 414
                 PHG G    +  D  E    +     ++            +  +         L
Sbjct: 353 ----FQPHGYGPTRFLRNDFVEEIAEALRQQDEIWMSEIFYAGGTAVKDI-----SANDL 403

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            + +  +  +  + E  + L   ++  L  G V+++  +   G       L E
Sbjct: 404 VEDIRMKGKNASFVEDRNNLLEALRPKLTPGTVLLLMGARDPGLEEFCTNLFE 456


>gi|32474077|ref|NP_867071.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Rhodopirellula baltica SH 1]
 gi|32444614|emb|CAD74616.1| probable UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate
           ligase [Rhodopirellula baltica SH 1]
          Length = 690

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAIT 114
           I  A+ +GA  ++    + A      IP   V D   AL ++      R    +  I I 
Sbjct: 189 ISQALARGAAGILTEQILPAP-----IPQAIVADTDRALAEIRSNQTDRPDQKLITIGIV 243

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGS 142
           GS GKT T  +    L  I    A    
Sbjct: 244 GSAGKTITSFLTASVLRDIPCRVAYQTD 271


>gi|295089862|emb|CBK75969.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cf.
           saccharolyticum K10]
          Length = 465

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 129/384 (33%), Gaps = 38/384 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++    R       IA++G+ GKTTT  ML+    + +              V   L 
Sbjct: 109 LGEMMRNYREA-----IAVSGTHGKTTTTSMLSEIFLAAEADPTIS--------VGGILP 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  ++  G  E  ++   E         P I VI  I   H+  F  + +I S+     
Sbjct: 156 SIGGNIRVGGPEFFITEACEYTNSFLEFFPTIEVILNIEEDHMDFFKDLADIRSSFTRFA 215

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWM 272
           +   K G + +N +   ++ +   +       + +FG  +  D+   +    S    ++ 
Sbjct: 216 KKTPKQGAVVINGEIEDWQEIVKNTEG----RVITFGTDRGFDYSAGEISYDSLARPTFD 271

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                 K   +     G H   N L            ++   + L  F   + R ++   
Sbjct: 272 FYIRGEKQDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEKKGV 331

Query: 333 ALNQGFFTLIDESYNANPASMKAAISV-----LSQISPHGEGRRIAVLGDMCEMGELSQS 387
                             AS+K A +           PH   R  A L +  E   LS +
Sbjct: 332 LNGVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAE--ALSMA 389

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             I LA++ +      +   G     + + + R    V Y  T + +  F++ S + GD 
Sbjct: 390 DCIVLADIYAARETDTL---GISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGD- 445

Query: 447 VVVKSSNSCGFYRLI---NLLLEE 467
           +++      G   ++     LL E
Sbjct: 446 LLIT----MGAGDIVNVGEALLAE 465


>gi|169827009|ref|YP_001697167.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
 gi|168991497|gb|ACA39037.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lysinibacillus
           sphaericus C3-41]
          Length = 276

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 84/270 (31%), Gaps = 28/270 (10%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            +P I+++T +  AHL      +  A AK  +    +++     N D        AKS+A
Sbjct: 6   FKPKISILTNLYDAHLDYHGTFDNYAEAKFGVTRNQDESDYFIYNADQPIVVGYAAKSNA 65

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I           +          ++ + +  Q             G H  +N+L  + 
Sbjct: 66  QKIP---------FSSNGRTVHGISADDTTIYWQGDPYMDRANIALPGKHNLENILAAVA 116

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++  D     + L+ F     R    +         + ++S   N  + K+A+    
Sbjct: 117 ACILVGCDKGKMEEVLATFGGVRHRT---QFVREWNGRKIYNDSKATNCLATKSALDAFQ 173

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                     + +L    + G   +     +       ++  V   G   L   +     
Sbjct: 174 A--------PVILLAGGLDRGHSFEELRPSM------NHVKGVVAFGETGLRFVEFAKSC 219

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  ++ ++    +      +GD++++
Sbjct: 220 GVQQTVIAQNVEDAVHYAAPMSAEGDIILL 249


>gi|161526004|ref|YP_001581016.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|189349279|ref|YP_001944907.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia multivorans
           ATCC 17616]
 gi|229486476|sp|A9AI95|MURC_BURM1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160343433|gb|ABX16519.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans ATCC
           17616]
 gi|189333301|dbj|BAG42371.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia multivorans ATCC
           17616]
          Length = 465

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 145/412 (35%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY              + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A I+      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL  +  V   + ET+D L   +     DGDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVV 442


>gi|310829359|ref|YP_003961716.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
 gi|308741093|gb|ADO38753.1| hypothetical protein ELI_3802 [Eubacterium limosum KIST612]
          Length = 471

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 117/417 (28%), Gaps = 38/417 (9%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +      +     L +P+    D LG L+ LA           I + G+ GKTTT  
Sbjct: 80  SAAIHEDNPDMVRAKDLDLPIVERSDYLGLLS-LAFD-------KTIGVAGTHGKTTTSS 131

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLVR 183
           M+   L       +          +P         D D+ + E       E         
Sbjct: 132 MIAALLHYADFDPSVSIGGK----LPEIGGNACLGDSDYFVIESC-----EYVDSFLKTS 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
            +I +IT I   HL  F+        ++    G        +       ++L    +   
Sbjct: 183 HYIGIITNIEEDHLDYFTEGLPQIK-ESFHKFGAILPPDGLMIAYGDSQDVLDTVENLRC 241

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
             T Y F K  +      ++      S+                 G H   N L  +   
Sbjct: 242 PVTTYGFEKKNDWTAHNIQYDDMGNPSFDAYHHNEFYGHFNMKIPGEHNVLNALSCIACS 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYNANPASMKAA 356
             L  D  T  K L  FH  + R +                  T +    +A        
Sbjct: 302 EFLGIDEATVQKTLDNFHGAKRRFEFRGEVNGINVYEDYAHHPTELKVVIDACLNHAH-- 359

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            ++     PH   R   +  +  +    +    ++               S      +K+
Sbjct: 360 NNLWVIFQPHTYSRTFYLFDEFVDAFAKADFIILNDI-YSDREGNDWDIYSEDLAKRIKE 418

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL----INLLLEEFP 469
                I        + +  ++  +L   D+V+V  S +    ++    ++ L E++ 
Sbjct: 419 KY--HIPTIVMSEFNTIVKYLSDNLESDDLVLVAGSQTI--NKVAYMLVDALKEKYE 471


>gi|308048066|ref|YP_003911632.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
 gi|307630256|gb|ADN74558.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ferrimonas
           balearica DSM 9799]
          Length = 433

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 130/428 (30%), Gaps = 68/428 (15%)

Query: 33  DSR-------SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPV 85
           DSR       ++A   A  A++   +DG       + + A  +VV+  +     +L+  +
Sbjct: 35  DSRANPPGADTLARDFAHVALQTGPFDG-----DVLAQ-AKRLVVSPGIDLRTPALAQAI 88

Query: 86  F----GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIG 141
                 V D+              + A ++AITGS GK+T   ++     +   +     
Sbjct: 89  AAGVEVVGDI--------ELFARAADAPVVAITGSNGKSTVTTLVGHLAQACGVSV---- 136

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
               +IG P     +       + EL    L      T  +   +  +  ++P HL  + 
Sbjct: 137 GVGGNIGTPALDL-LGQGHQLYVLELSSFQL----ETTRSLPAQVGTVLNVSPDHLDRYD 191

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E    AK  ++           +++       +  S         +FG          
Sbjct: 192 SYEAYRDAKLALYPQCRIALFNRADHNTLPSSHPRTLSFGPDAPDGDNFGVV-------- 243

Query: 262 KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
                    W+               +G H  QN+L  L +      ++D  + AL  + 
Sbjct: 244 -------GDWLMQGQTRLKRRDQLTLVGAHNEQNVLAALALGQAAGLEMDAMLSALDSYR 296

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM 381
               R         +     +++S   N  +        + +     GR   + G     
Sbjct: 297 GLPHRC---ELVAERAGVRYVNDSKATNLGA------TQAALDGLELGRVWLIAG----- 342

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
           G+        LA  L+      +   G    A+      +  V    +++          
Sbjct: 343 GDAKGQDLSVLAPALNQLA--GLITLGQDGPAIAALRSDATEVV---SIESAVAVAADQA 397

Query: 442 VDGDVVVV 449
             GD+V++
Sbjct: 398 RAGDIVLL 405


>gi|225872731|ref|YP_002754188.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
 gi|254763733|sp|C1F455|MURC_ACIC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|225793538|gb|ACO33628.1| UDP-N-acetylmuramate--alanine ligase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 458

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/410 (15%), Positives = 116/410 (28%), Gaps = 38/410 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V    +  IPV         +  LA   RL+     IA+ G  GKTTT  M+   L
Sbjct: 77  ENPEVREARARKIPVIQ----RAEM--LAELMRLKYG---IAVAGMHGKTTTTSMIASVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++ +     +          L       +  + + E   S           + P + V+T
Sbjct: 128 AAGELDPTVVVGGRVD---ALGSNARLGNSHYLVAEADES-----DRSFLKLSPILTVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  +  + ++  A  E    +   G      D+     L  +          S 
Sbjct: 180 NLDREHMDCYRDMADVEDAFLEFMNRVPFYGANVACIDNPQLAALLPRVRRRVFTYGTSL 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G       ++          +     Q        H  G H   N    + I   L    
Sbjct: 240 GADFVV--RMLPPAPEVRSRFEIASAQSVLGPFDLHVPGIHNVLNAAAAVAIAVQLDLKE 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              ++ L  F   + R +             I + Y  +P  ++A +      +      
Sbjct: 298 QAIVQGLKSFRGVDRRFQLKGVVDG----ITIIDDYGHHPTEIRATLRA----ARDCGYA 349

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------GFHVLALKDALPRSI 422
            I VL                +        +  + +         G    AL  ++ +  
Sbjct: 350 NIHVLFQPHRYSRTRDLLDEFVTSFADASTVEMLDIYAASEAPLPGITSAALVQSIGQPG 409

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVV-VKSSNSCGFY-RLINLLLEEFPA 470
            V Y+ + +     I      GD+++ + + N       L+  L    PA
Sbjct: 410 -VRYAASTEEAVTAILDRAAPGDLILTLGAGNVSQLAPLLVERLQSRLPA 458


>gi|332304541|ref|YP_004432392.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171870|gb|AEE21124.1| UDP-N-acetylmuramate [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 436

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 130/418 (31%), Gaps = 46/418 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   +   S P + +++VL                 ++A++G+
Sbjct: 55  IGNALSRGNLA--VEYVLNRGLPYTSGPQWLLENVLN-------------DRWVLAVSGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  ML   L S   +    G     I     ++    +  F + E     S   +
Sbjct: 100 HGKTSTSSMLAWILESAGMS---PGFLIGGIPQNFGISARLGETPFFVIEADEYDSAFFD 156

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      RP   VI  +   H   F  I +I      +   +   G +     D+    
Sbjct: 157 KRSKFVHYRPRTLVINNLEFDHADIFDSIADIQKQFHHLIRMIPGNGLVIAPKADTHITQ 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  K     ++ + S  K         ++    + +                        
Sbjct: 217 VLDKGCWSPVQFVGSDWKVAECAADGSEFDVVYKGTSFGRVK-----------WSLLGQH 265

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+   +  +            A+          +R          T+ D+  +       
Sbjct: 266 NVQNAMMAIIAARHAGVLPEVAIEALTNFVNAKRRMEVLGTVNGITVYDDFAHH---PTA 322

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF-HV 411
            + ++    +  G+ R +AVL    E    +     H       S      V++    H+
Sbjct: 323 ISTTLEGLRAKVGKARILAVL----EPRSNTMKMGVHKQTLAQ-SWSAADQVFIYQPSHL 377

Query: 412 LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               DAL     V  S  + ++ L   I S    GD +++  SN  GF  +   LL++
Sbjct: 378 SWSMDALLAQSEVTTSLHDDLEILEKSILSYAKPGDHILI-MSNG-GFGGIHQHLLQK 433


>gi|146295400|ref|YP_001179171.1| UDP-N-acetylmuramate--alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|166222969|sp|A4XGE5|MURC_CALS8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145408976|gb|ABP65980.1| UDP-N-acetylmuramate--L-alanine ligase [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 455

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 117/367 (31%), Gaps = 38/367 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IA++G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGMLMKDYKN-----VIAVSGTHGKTTTTSMIGYILKKA---LLNPTVLVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   ++ + E       E         P I VI  I   HL  F  IE I  +  +
Sbjct: 144 GNFCIGSSEYLVVEAC-----EYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               + + G I  N DD     + +       + +  F     ADF       C+     
Sbjct: 199 FALKIPQNGFIVANLDDENVYSVAS----YLKQNVIYFSTKTKADFWADNITSCNGYYEF 254

Query: 273 EVQLQGKSMEVV--HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +V  +          +  G+H   N L    +   L  D +T  +A+  F     R    
Sbjct: 255 DVVNKDFKHLCHIKLNIPGFHNVYNSLAAFSVAYTLGIDKNTIKEAIFEFCGASRRL--- 311

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG-----EGRRIAVLGDMCEMGELS 385
              L +    ++ + Y  +P  ++A +  L +++        +    + L  + E    S
Sbjct: 312 -EKLGKIDGIVLYDDYAHHPTEIEATLRTLKKLAKEKVIVIFQPHTFSRLKSLMEGFVKS 370

Query: 386 QSFHIDLAE----VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
            S    +           N+      G     L + L +  +   Y +  + +  ++ ++
Sbjct: 371 LSLADKVIVTDVYAAREKNV-----YGVSSKDLYEKLKKAGVDCEYIDQFEKIAEYVLNT 425

Query: 441 LVDGDVV 447
              GD+V
Sbjct: 426 AQKGDIV 432


>gi|299142302|ref|ZP_07035435.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
 gi|298576391|gb|EFI48264.1| UDP-N-acetylmuramate--alanine ligase [Prevotella oris C735]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 102/352 (28%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKN--YGTNYILSDSSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +             I       
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT------ELIQPGGALI 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ K H      +Y + +               E S+  V        +       
Sbjct: 222 IHRDLEMKQHVQEGVKVYDYSREAGDFHAENIVIDNGEISFDFVSPIENVKNIKLGQPVP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENAVAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKNDKHVFLSDYGHHPKEVL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S ++   +        +GR+I V+     +   ++ F+ + A+ L   N   V L+   
Sbjct: 342 QSARSLKELF-------KGRKITVIFQPH-LYTRTRDFYHEFADAL--SNFDEVVLTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L   +        D +  +++S   D DV+VV  
Sbjct: 392 PAREEPIEGVTSKLIFDNLKPGVEKTIIR-KDDVLDYVKS--RDFDVLVVLG 440


>gi|322378887|ref|ZP_08053304.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
 gi|322380387|ref|ZP_08054593.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321147177|gb|EFX41871.1| UDP-MurNac-pentapeptide presynthetase [Helicobacter suis HS5]
 gi|321148697|gb|EFX43180.1| UDP-MurNac-pentapeptide presynthetase (MurF) [Helicobacter suis
           HS1]
          Length = 464

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 122/355 (34%), Gaps = 28/355 (7%)

Query: 98  LAVAARLRS-KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT-LAR 155
           LA     R     IIAITGS GKT+ K  L   L      Y+ + S N  +G+       
Sbjct: 127 LAKEKLKRMKNLQIIAITGSFGKTSVKNYLYQILQGKFTIYSSLNSVNTLLGLSQDINQN 186

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
           +       I E G    G+I+ +  L+  H A+IT I   H+  F  I+ I   KAE+ +
Sbjct: 187 LDETSTLYIAEAGARQKGDIKAIGSLLEHHYAIITEIGNQHIEYFKDIDSIYETKAELLQ 246

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                     + +             L         K K    Q+R      E +  E+ 
Sbjct: 247 SPRLIQAFCYDKNP------------LEPFYTELTDKIKLYPGQIRHANATLEGTSFELF 294

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           L  + +      +G     N+ + + +       +    + ++  +P   R         
Sbjct: 295 LDNQWVAFETKILGAFNVDNIALAVLMGHYFDISIPQLQRLVAKLNPVPHRLHPLHINDK 354

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                +ID+ +N N   M  ++     ++    GRRI V   + E    S +        
Sbjct: 355 F----IIDDGFNGNLKGMLESVR----LASLYMGRRIIVTPGLVESDVESNTT----LAK 402

Query: 396 LSLYNISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     ++G  +V      L R   V + +    L   +Q+  +  D+++ 
Sbjct: 403 AIDSVFDIAIITGELNVSVFAQNLQRPQRV-FLKDKGQLEQILQTITLAKDLILF 456


>gi|226943454|ref|YP_002798527.1| UDP-N-acetylmuramate--L-alanine ligase [Azotobacter vinelandii DJ]
 gi|259509764|sp|C1DQA0|MURC_AZOVD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226718381|gb|ACO77552.1| UDP-N-acetylmuramate--alanine ligase [Azotobacter vinelandii DJ]
          Length = 488

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 147/414 (35%), Gaps = 46/414 (11%)

Query: 56  FILHAVQKGAGL--VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSK 107
           FI H  +  A    +VV++ + +S   +       IPV         +  LA   R R  
Sbjct: 67  FIGHRAENAASADVLVVSSAVNSSNPEVMTALERRIPVV----PRAEM--LAELMRYRHG 120

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  ++    ++       +     +               + I E 
Sbjct: 121 ---IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQLGSSRYLIAEA 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P +AV+T I   H+  +      +     +    L   G   L 
Sbjct: 175 DESDASFLH-----LQPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLC 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     +      L  +   ++G  ++AD +    +Q   +++  V  Q ++  E+  
Sbjct: 230 VDDPVVREILP----LVARPTITYGLGEDADIRAVDIRQAGMRTYFTVLRQERAPLEMSV 285

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L T+ I      D    ++ LS F     R + Y     +G   ++ + 
Sbjct: 286 NMPGVHNVLNALATIAIACDEGIDDTAIVQGLSGFQGVGRRFQVYGELQIEGGGVMLVDD 345

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS--- 402
           Y  +P  + A +  +    P        V+         ++  + D  ++LS  N+    
Sbjct: 346 YGHHPREVAAVLKAVRGGWPDR----RLVMVYQPHRFTRTRDLYEDFVQILSDANVLLLM 401

Query: 403 HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
            V+ +G          +L  ++ +   +   Y E    +   ++  L  GD+++
Sbjct: 402 EVYPAGEEPIPGADSRSLCRSIRQRGQLDPIYVERGADIAPLLKPLLRPGDILL 455


>gi|240144337|ref|ZP_04742938.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|257203680|gb|EEV01965.1| UDP-N-acetylmuramate--alanine ligase [Roseburia intestinalis L1-82]
 gi|291540809|emb|CBL13920.1| UDP-N-acetylmuramate--L-alanine ligase [Roseburia intestinalis
           XB6B4]
          Length = 459

 Score = 52.9 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/384 (17%), Positives = 132/384 (34%), Gaps = 47/384 (12%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++            IA+ G+ GKTTT  M++  L + K                  
Sbjct: 101 ELLGQIMDNYNNS-----IAVAGTHGKTTTTSMISQILLAAKADPTISVGGILK------ 149

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  ++ +S   E         P  +VI  +   HL  F  I++I ++  +
Sbjct: 150 --AIEGNIKVGKSDIFVSEACEYTNSFLHFYPRYSVILNVEAEHLDFFKDIQDIRNSFRK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
                +K G I +N +   +  L     +     + +FG + + D+             S
Sbjct: 208 FAGNTKKDGAIIINGEIENYTEL----TSGLDPQVITFGLNDSCDYYPSDITFDETACAS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  +      M+V  H  G H   N L  + +   L    D  +  LS F   + R +  
Sbjct: 264 FTAMHHGTPVMDVKLHVPGMHNVSNALAAIALSLDLGISTDAILAGLSAFGGADRRFQYK 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            C         I + Y  +P  ++A ++               VL         +++F  
Sbjct: 324 GCVDG----VTIIDDYAHHPTEIRATLTAAKNYPHKR-----LVLAFQPHTYSRTKAFLD 374

Query: 391 DLAEVLSLYNISHVWLSGFHVLA------------LKDALPRSIHVHYSETMDGLFLFIQ 438
           D A+VLS+     V L+  +               L     +    +Y  + + +  F+ 
Sbjct: 375 DFADVLSMA--DVVVLADIYAAREKNTYDISSRDILAKLKEKGTECYYFPSFEEIEKFLL 432

Query: 439 SSLVDGDVVVVKSSNSCGFYRLIN 462
            + ++GD +++      G   ++N
Sbjct: 433 KNCINGD-LLIT----MGAGDIVN 451


>gi|294634491|ref|ZP_06713026.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
 gi|291092005|gb|EFE24566.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda ATCC 23685]
          Length = 456

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 76/425 (17%), Positives = 129/425 (30%), Gaps = 53/425 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  +I  +S P +  D+VL                 +IA+ G+
Sbjct: 67  IGNAMARGNPC--VEAILERNIPYVSGPQWLHDEVLR-------------HRWVIAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFELGMSHLGE 174
            GKTTT  M+   L +       +       GVP          D  F + E        
Sbjct: 112 HGKTTTAGMVNWILEACGYQPGFVIG-----GVPGNFEVSARLGDSPFFVIEADEYDCAF 166

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                      P   ++  +   H   F  +  I      +   +   G I    +D+  
Sbjct: 167 FDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRLVPGKGRIISPANDANL 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + + A          +S  +           K   + S   V L G+ +  V        
Sbjct: 227 KQVLA-------MGCWSEQEQSGEGAAWHAQKLSPDASHFVVTLDGERVGEV--QWSLVG 277

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             NM   L  ++          +A           +R          T+ D+   A+  +
Sbjct: 278 EHNMHNGLMAIAAARHVGVPPAEACRALASFINARRRLELRGEAYGVTVYDDF--AHHPT 335

Query: 353 MKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              A     +    G  R +AVL    +  +MG         L           V+L   
Sbjct: 336 AILATLAALRGKVGGTARILAVLEPRSNTMKMGVCKNELAPALGR------ADEVYLYQP 389

Query: 410 H---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLIN 462
                  ++ A       H+S  +D L   I  +   GD ++V  SN  GF     RL+ 
Sbjct: 390 QHIPWQVVEVAEACVQPAHWSADLDTLVDMIVKNAQPGDHILV-MSNG-GFGGIHERLLQ 447

Query: 463 LLLEE 467
            L ++
Sbjct: 448 ALAQK 452


>gi|28897232|ref|NP_796837.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839040|ref|ZP_01991707.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|260366058|ref|ZP_05778524.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
 gi|260878313|ref|ZP_05890668.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|260896402|ref|ZP_05904898.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|33301382|sp|Q87SG6|MURD_VIBPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|28805441|dbj|BAC58721.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149747468|gb|EDM58416.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ3810]
 gi|308087563|gb|EFO37258.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus Peru-466]
 gi|308093171|gb|EFO42866.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AN-5034]
 gi|308111373|gb|EFO48913.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus K5030]
          Length = 437

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/343 (18%), Positives = 125/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T         +IGVP     +  D D  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTV----GVGGNIGVPALEL-LEQDADLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +  +AK  IF+           
Sbjct: 162 LSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +       +++      + +FG     D Q    +    ++W+    Q         
Sbjct: 208 AELAVVNRDDQETYPEVEMPVVTFGS----DEQAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|253997368|ref|YP_003049432.1| UDP-N-acetylmuramate--L-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984047|gb|ACT48905.1| UDP-N-acetylmuramate/alanine ligase [Methylotenera mobilis JLW8]
          Length = 479

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/400 (17%), Positives = 124/400 (31%), Gaps = 36/400 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  +  IPV         +  LA   R +     IA+ G+ GKTTT  ++   L  
Sbjct: 79  PEVKAARAKKIPVV----PRALM--LAELMRFKQG---IAVAGTHGKTTTTSLIASILGE 129

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +                    D+ + E   S    +        P +AV+T I
Sbjct: 130 AGMDPTFVIGGKLEAANANAKLGTG---DYIVAEADESDASFLHLT-----PVMAVVTNI 181

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  +   E         F    +    +        +    +      K + ++G 
Sbjct: 182 DQDHMDTY---EHSFEKLKSAFVEFLQQLPFWGMAVVCVDDANIREILPRVTKPVMTYGL 238

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQG---KSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           S++A  + +  +    +    VQ         +V  +  G H   N L  + I S L   
Sbjct: 239 SEDARIRAKNVRADDGKMHFTVQRINGVTTEFDVTLNLPGNHYVLNALAAIAIASELNVP 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
               IKAL  F     R +RY              ++          + + + I+     
Sbjct: 299 DAAIIKALKEFKGVGRRFERYGEVPAMPRNAASAGTFTLIDDYGHHPVEMQAVIAAARGA 358

Query: 370 RRI--AVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLALKD------AL 418
                 V+         ++    D   VLS  ++   + V+ +G   +   D      A+
Sbjct: 359 FPNRRLVMAFQPHRYTRTRDCFEDFVRVLSSADVVLLTEVYSAGEASIVAADTRSLIRAI 418

Query: 419 PRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             +  V   + ET D L   I       DVV+V  + S G
Sbjct: 419 RVAGKVEPLFVETTDELPQAILDIAHADDVVIVMGAGSIG 458


>gi|161504752|ref|YP_001571864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160866099|gb|ABX22722.1| hypothetical protein SARI_02875 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 134/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A +  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATVLNVTEDHMDRYPFGLQQYRAAKLSVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCVSFGV------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLARYLTGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAQLA-ALRPEI-AEQTETMEEAMRLLAPRVQSGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDVFTRLAKEL 437


>gi|84686338|ref|ZP_01014232.1| UDP-N-acetylmuramate--L-alanine ligase [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84665521|gb|EAQ11997.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacterales bacterium
           HTCC2654]
          Length = 467

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 127/396 (32%), Gaps = 40/396 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            +V+ +     +    +    G+  V  A   LA   RL+S    IA+ G+ GKTTT  +
Sbjct: 74  VVVISSAIKPGNPELDTARARGLPVVRRA-EMLAELMRLKSN---IAVAGTHGKTTTTTL 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L +           N  I             ++ + E   S         + +   
Sbjct: 130 VAELLVA---GGIDPTVINGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNRLPAT 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IA++T I P H+ ++   E +     +    +   G      DD+  + L  K       
Sbjct: 182 IAIVTNIDPEHMDHWGTEEALHKGFYDFVSNIPFYGLAVCCTDDADVQTLVGKITDR--- 238

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME-VVHHGIGYHMAQNMLMTLGIVS 304
            + +FG +  AD +       +  +  ++ L    ++       G H   N L  + +  
Sbjct: 239 RVVTFGFNAQADVRAVNLTYDAGIAHFDIVLPDGRIDGCTLPMPGDHNVSNALAAVAVSR 298

Query: 305 ILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            L        +AL+ F     R            ++      ++ +     A       V
Sbjct: 299 HLGMKFAEIREALAKFGGVNRRFTRVGMWNDVPIIDDYGHHPVEIAAVLKAARQAVKGRV 358

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LA 413
           ++   PH   R  ++  D C                  +  IS V+ +G           
Sbjct: 359 IAVHQPHRYSRLHSLFDDFCTC-----------FNEADVVGISEVYAAGEDPIPGATRDD 407

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           L   L    H   +  +T + L   +++    GD+V
Sbjct: 408 LVRGLTAHGHRHAYAVDTEEDLAALVRAEAEPGDIV 443


>gi|156932462|ref|YP_001436378.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
 gi|156530716|gb|ABU75542.1| hypothetical protein ESA_00241 [Cronobacter sakazakii ATCC BAA-894]
          Length = 459

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/367 (16%), Positives = 115/367 (31%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   V+  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYAPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIWPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A          +S  +      + +  K  ++ S  EV L G+ +  V   
Sbjct: 222 NDINLKQVMA-------MGCWSEQEQLGEQGRWQAKKLTNDASKWEVWLDGECVGQVEWQ 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +         +     +             +         +R      +     + + + 
Sbjct: 275 LVGEHNMQNGLAAIAAARHVGVTPADA---AQALGSFVNARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGVCKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L   H     V  + DA  +    H+S  +D L   I  +   GD ++V  SN  GF  
Sbjct: 385 FLFQPHHIPWQVAEVADACIQ--PAHWSADIDTLVEMIVKTAQPGDHILV-MSNG-GFGG 440

Query: 460 LINLLLE 466
           +   LL+
Sbjct: 441 IHQKLLD 447


>gi|148543823|ref|YP_001271193.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           reuteri DSM 20016]
 gi|184153225|ref|YP_001841566.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227364727|ref|ZP_03848776.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|325682646|ref|ZP_08162163.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
 gi|167017288|sp|A5VJ32|MURD_LACRD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|226711917|sp|B2G6K4|MURD_LACRJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|148530857|gb|ABQ82856.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri DSM 20016]
 gi|183224569|dbj|BAG25086.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           reuteri JCM 1112]
 gi|227070186|gb|EEI08560.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           reuteri MM2-3]
 gi|324978485|gb|EGC15435.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           reuteri MM4-1A]
          Length = 456

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 121/410 (29%), Gaps = 47/410 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV    +     L          +    +L           ++++TGS GKTTT   LT
Sbjct: 75  VVVKNPGIPYDNPLVAAFVKQGTPIITEAELGWQI---FDGHLVSVTGSNGKTTTTT-LT 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             + +    +    + N  I        +  D D  + EL    L         + PHIA
Sbjct: 131 QLMIAENAKHQVKYAGNIGISFSKIAEDLGPD-DTLVTELSSFQLLGA----PTIHPHIA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      E   +AK  I     K   + +N+D   ++ +  +S A      
Sbjct: 186 IITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWDRDEWQKIAQRSQAT----- 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   +           E   +  + Q          IG    +N L  +    +  
Sbjct: 241 ----IVPFSRLNKSHEGSYVEDGMIYWRGQEVMPTKDIRLIGPQNVENALAAIAAAKLSG 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   K L+ F     R    +  +        ++S + +  + + A+    +     
Sbjct: 297 VTNDAIKKVLTTFSGVRHRL---QYVMEYQERLFYNDSKSTDIEATEVALQGFDRPVILL 353

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHY 426
            G            G         L       ++  + + G     +KDA  +  + V  
Sbjct: 354 AG------------GLDRGYTFERLVPYFKK-HVKAMIVFGECKDKMKDAGNQAGVPVVE 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           SE               GDV+++    +S             F   +  L
Sbjct: 401 SENAITAVPEAWKLSEPGDVILLSPANASWDQFPSFEVRGDKFIEAVEEL 450


>gi|254246418|ref|ZP_04939739.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
 gi|124871194|gb|EAY62910.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia cenocepacia
           PC184]
          Length = 465

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 91/432 (21%), Positives = 156/432 (36%), Gaps = 40/432 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNMPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGDVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHVLALK--DALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +     DAL R++         +  T+D +   +     +GDVV+   + S G 
Sbjct: 393 AAGEAAIPTASGDALSRALRAVGKVDPVFVATVDDVPDALAKVAQNGDVVITMGAGSIGG 452

Query: 458 --YRLINLLLEE 467
              +L+  + ++
Sbjct: 453 VPAKLVQHIQQK 464


>gi|56696089|ref|YP_166443.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350286|sp|Q5LU62|MURC_SILPO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56677826|gb|AAV94492.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 465

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/401 (17%), Positives = 127/401 (31%), Gaps = 43/401 (10%)

Query: 64  GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +VV+++ +      L       +PV    D       LA   RL+S    IAI G+ 
Sbjct: 70  GAAVVVISSAIKPGNPELDGARAQGLPVVRRAD------MLAELMRLKSN---IAIAGTH 120

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   + +           N  I    +        ++ + E   S       
Sbjct: 121 GKTTTTTMMAELMVA---GGFDPTVINGGIIHAYSSNARMGQGEWMVVEADES-----DG 172

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
             + +   +A++T I P H+ ++  IE +     +    +   G      D +  + L  
Sbjct: 173 SFNRLPATVAIVTNIDPEHMEHWGSIEALRQGFYDFVSNIPFYGIAVCCTDHAEVQALVG 232

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +     ++T     ++      L      +    +                G H   N L
Sbjct: 233 RITDRRVRTYGFNAQADVRATNLTYKGGVAHFDILLQHEDMVIEGCTLPMPGDHNVSNAL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + +   L    D    AL+ F     R       + +     I + Y  +P  + A +
Sbjct: 293 SAVAVARHLGMKADEIRAALAAFGGVNRRFT----KVGEVNGVTIIDDYGHHPVEIAAVL 348

Query: 358 SVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
               Q           PH   R   +  D C     +     D+  +  +Y      + G
Sbjct: 349 KAARQASEGRVIAVHQPHRYSRLSNLFDDFCACFNEA-----DVVAIAEVYAAGEAPIPG 403

Query: 409 FHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
               AL   L R  H H     + + L   ++     GD+V
Sbjct: 404 ADRDALVAGLIRHGHRHARAILSEEDLERLVREQTRPGDMV 444


>gi|77361421|ref|YP_340996.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|122063255|sp|Q3IG02|MURD_PSEHT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|76876332|emb|CAI87554.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 446

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 110/341 (32%), Gaps = 35/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TGS GK+T   +    L +     A  G+    +   L       DVD  + EL 
Sbjct: 112 PVVAVTGSNGKSTVVTLAQQVLLAAGYKAALGGNIGTAVLDLLQSDLSNNDVDVYVLELS 171

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++P  A +  ++  HL  ++  +    +K  I+              
Sbjct: 172 SFQLD----TTTSLQPISATVLNVSEDHLDRYASYQAYIDSKLSIYNN------------ 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                L+   +      +      S  A+       +  +Q++     +          +
Sbjct: 216 ---AALVITNADDEATHSKAKSQLSFGANQGDYSLGEYQQQTYFMQANKAFLPVTSLAVV 272

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + ++S           A S F+    R    +    +      ++S   
Sbjct: 273 GKHNYLNALAVMALLSPFNISKAQYSTAFSQFNGLAHRC---QFVAERAGVKYFNDSKAT 329

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI  L+       G+++ V+      G+   +    L   L   ++  +   G
Sbjct: 330 NVGATIAAIDSLA-----TNGQQLIVIAG----GDAKGADLNALTPYLQQ-HVKALICFG 379

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   H +  M       +     G++V++
Sbjct: 380 KDAKDLMALTNKS---HLTNNMSEAVTLAKQLSEPGNIVLL 417


>gi|124022231|ref|YP_001016538.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9303]
 gi|123962517|gb|ABM77273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 460

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 100/347 (28%), Gaps = 33/347 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA R  S    IAITG+ GKTT   +L   L S        G+  +         R
Sbjct: 98  GEMAVAWRSLSHLPWIAITGTNGKTTVTHLLNHVLESNGLKAPMGGNVGHAAAEIALKWR 157

Query: 156 MPVD--VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            P     D+ + EL    +         + P I + T + P HL     ++     K  +
Sbjct: 158 QPNAQRPDWLVMELSSYQI----EAAPEIAPRIGIWTNLTPDHLERHGTLDAYRKIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               E++     N DD      ++        +    G + +        +       + 
Sbjct: 214 L---ERSEIRIFNGDDPDLSSQRSSWDKGLWVSSEGPGTANHRADFWIDAE-----GLVR 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                          G H  QN+LM                 +L  F     R       
Sbjct: 266 DPQGALFAASALAMPGQHNLQNLLMVTAAARQTGLPAKAIEASLRSFPGVPHR---LEEL 322

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +    ++ ++S   N  +    +  +           + + G   + G+ S        
Sbjct: 323 GHIQQMSVYNDSKATNYDAACVGLKAV-------PAPAVVLAGGQTKQGDASGWLKQLDL 375

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFI 437
           +  +      V L G     L D +  S     +H    ++      
Sbjct: 376 KACA------VILFGAGAAELNDLIETSGFRGELHCCSNLNAAVTLA 416


>gi|258645243|ref|ZP_05732712.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
 gi|260402593|gb|EEW96140.1| UDP-N-acetylmuramate--alanine ligase [Dialister invisus DSM 15470]
          Length = 469

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 134/395 (33%), Gaps = 42/395 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             + ++   +    S  +P+F   DVL A+ K             IA+ G+ GK+TT  M
Sbjct: 74  SAIGMDNPELQEAKSRDLPIFHRSDVLAAIFKWGKG---------IAVAGAHGKSTTSAM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +       K     +          L         +  I E   S    ++F T      
Sbjct: 125 IGQIFHVAKMDPTIVLGGFTDY---LKGNSCLGHGEHIIAEADESDGSFLKFATF----- 176

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           ++V+T I   HL ++  +E I  A  E    +       +   DS              K
Sbjct: 177 LSVVTNIEDDHLDHYGTVENIRKAFVEFLNHVTYKDGGAIVCIDSEG---VQAILPQIKK 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            + SFG + +A+++    +   +   +     + K   V     G H  ++ L  + +  
Sbjct: 234 KVISFGINDSAEYRAVNKRYKKQNMLFDVYHYKEKLGTVSLQIPGIHNVRDALGAIVVAL 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                 +T++KALSVF   + R +       +     I + Y  +P  + A +    ++ 
Sbjct: 294 YCGISFETSVKALSVFSGVKRRFQT----KMKEHGVWIVDDYAHHPTEIAATLKAAKEM- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF---------HVL 412
               GR   +          ++    + +E     ++   + ++ +G           + 
Sbjct: 349 ----GRHRVICAFQPHRYSRTKLLQEEFSEAFIDADVLFFTDIYAAGESPIQGIDGTLIP 404

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L         ++Y + ++ L   +   +   D++
Sbjct: 405 NLVKRRFPDKPINYVKNVEDLPKELYKVIKPDDML 439


>gi|153009072|ref|YP_001370287.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151560960|gb|ABS14458.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 467

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 102/349 (29%), Gaps = 35/349 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IAITG+ GK+TT  ++   + +  +          +IG  +     P    F + 
Sbjct: 112 PDCPFIAITGTNGKSTTTALIAHIIKASGRDMQLG----GNIGTAILTLEPPQANRFYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     +E  A+ K  +      + T  +
Sbjct: 168 ECSSYQID----LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLV---AASDTAIV 220

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD + E +  + +  G+  +    +                +       +   +  + 
Sbjct: 221 GVDDDYCEAIADRLYRDGVHVVRISKERHLGKGYFADGA----KLLWSQDGEIDEIASLE 276

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                  A N    L  V    +   +  +  +      G   R     ++G    +++S
Sbjct: 277 GIGSLRGAHNAQNALAAVVACLSVGLSLEEIDAGLKSFPGLAHRMEQVGHRGKVLFVNDS 336

Query: 346 YNANPASMKAAISVL-SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
              N  +   A+S     I     G   A  G +  +                   I+  
Sbjct: 337 KATNAEATAPALSSFLQNIYWIAGGVPKA--GGIASLAGFFPR-------------IAKA 381

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV 449
           +L G         L  +     S+T+            +      VV++
Sbjct: 382 YLIGEAAAQFAATLGDAAPFEISDTLAVAVEHAARDAGNDAAPEPVVLL 430


>gi|123441033|ref|YP_001005022.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166224749|sp|A1JJJ4|MURC_YERE8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122087994|emb|CAL10782.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 491

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 139/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + +  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIEDNDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        + +   +   L   D+++V+ 
Sbjct: 414 EPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464


>gi|163784502|ref|ZP_02179369.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880227|gb|EDP73864.1| UDP-N-acetylmuramate--alanine ligase [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 412

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 134/441 (30%), Gaps = 62/441 (14%)

Query: 48  GPHYDGHDFILHAVQK--GAGLVVVNTDMVASIG------SLSIPVFGVDDVL-GALNKL 98
           G       FI H+ +   GA +VV ++ +            LSIPV          L +L
Sbjct: 7   GAKV----FIGHSKENVHGADVVVYSSAVKEDNPEIIEAKKLSIPVI----PRGEMLAEL 58

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IAI GS GKTTT  M+   L         +                  
Sbjct: 59  MRFKYG------IAIAGSHGKTTTTSMVGSILGKTGYDPTVVIGGKLE---AYGSNAKLG 109

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             DF + E   S           + P I  I  I   H+  +  +++I  A  +    + 
Sbjct: 110 RGDFLVAEADES-----DGSFLRLSPTIVSINNIDLEHVGYYRNLDDIKKAFIKFANKVP 164

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G + LN DD   + +  K     IK    FG             +    ++       
Sbjct: 165 FYGAVALNIDDKNVKDILPKIEKKVIK----FGIENKDADINAYELELVNGTYRFKVNDL 220

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              ++     G H   N L  + I   L        + L  F       +R+    +   
Sbjct: 221 G--QIHLSVPGKHNVYNALTAVAIADELGIPFCVVKETLENFK---NASRRFEIKYDGNI 275

Query: 339 FTLIDESYNANPASMKAA--------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             + D +++ +                 +++   PH   R  ++     E    S +  I
Sbjct: 276 KVIDDYAHHPSELKATICAAKDKYPDRRIITVFQPHRYTRLHSLFNQFAESFGNSDTVII 335

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                     I ++         L + +  +   V++++ +  +   ++  + +GDVV++
Sbjct: 336 TDIYSAGEKPIENI-----SAEKLTEKIKEKGKEVYFAKYLSDVENMLKEMIKEGDVVLI 390

Query: 450 KSSNSCG-----FYRLINLLL 465
                 G       +L   L 
Sbjct: 391 ---LGAGNITQVAEKLAKYLE 408


>gi|148240320|ref|YP_001225707.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 7803]
 gi|147848859|emb|CAK24410.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 7803]
          Length = 463

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 116/390 (29%), Gaps = 44/390 (11%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTL 153
            +++VA    S    I ITG+ GKTT   +L   L+         G+  +         L
Sbjct: 98  GEMSVAWDALSGIPWIGITGTNGKTTVTHLLQHVLAHAGLEAPMAGNVGHSAAELALEVL 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D+ + E+    +         V P I + TT+ P HL     +    + K  +
Sbjct: 158 QGTRPKPDWVVMEMSSYQI----EAAGEVSPRIGIWTTLTPDHLERHGTLAAYRAIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               E+  T  LN DD+            G+   +  G     D         + Q W+ 
Sbjct: 214 L---ERAETPVLNADDADIRQHCGAWSRPGL--RWVSGADDGPDKDSIHRISVNAQGWVS 268

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +           G H  QNML+        +    +   AL  F     R +     
Sbjct: 269 QGERPLFPADALPLPGDHNRQNMLLATAAALEASVSASSIEAALRCFTGVPHRLEPLGSV 328

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  + ++S   N  +    +  +           + + G   + G+          
Sbjct: 329 GGIP---VFNDSKATNYDAAAVGLRSVQA-------PVVLLAGGQTKQGDADPWL----- 373

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLV---DGDVV 447
             L    +  V L G     L D +  +     V +   ++       S       G V+
Sbjct: 374 -ELLQSQVCGVVLFGAGAGELADLIETAGFSGPVMHHADLNAAVPQALSLAKDFEAGSVL 432

Query: 448 V--VKSS---------NSCGFYRLINLLLE 466
           +    +S             F RLIN + +
Sbjct: 433 LSPACASFDQYPNFEARGDHFRRLINAVKD 462


>gi|116494762|ref|YP_806496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           ATCC 334]
 gi|239631641|ref|ZP_04674672.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|301066323|ref|YP_003788346.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
 gi|122263820|sp|Q039R8|MURD_LACC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116104912|gb|ABJ70054.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei ATCC 334]
 gi|239526106|gb|EEQ65107.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|300438730|gb|ADK18496.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus casei
           str. Zhang]
          Length = 459

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 91/321 (28%), Gaps = 42/321 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + EL    L         + PHIAV+T I  AHL          +AK  I     
Sbjct: 161 KDDTIVAELSSFQL----CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N+D      L  +  +      +S   ++ A  QL       +          
Sbjct: 217 PDDYFIMNWDLPEMHELAKQ--SKAQIVPFSRKNAEGARAQLIDGWLTFDG-------DR 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N L  +  V +     D   + L  F   + R +       +  
Sbjct: 268 IMKASEMQIPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGR-- 325

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             + ++S   N  +   A++   Q      G     L  M  +              L  
Sbjct: 326 -RVYNDSKATNVEAATVALNAFDQPIVWLAGGLDRGLP-MDAL------------TPLVK 371

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-- 452
            ++  + + G     +        + V  +E +             GDV+++    +S  
Sbjct: 372 KHVKSMVVFGQTAPLMAKIAKDAGVPVQTTENVMTAVPLAYEVSRPGDVILLSPAAASWD 431

Query: 453 -------NSCGFYRLINLLLE 466
                      F + +N L  
Sbjct: 432 QYPNFEVRGDDFIKAVNQLKA 452


>gi|238760095|ref|ZP_04621245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
 gi|238701714|gb|EEP94281.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia aldovae
           ATCC 35236]
          Length = 444

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 126/381 (33%), Gaps = 54/381 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-----LTLARM 156
               ++A ++AITGS GK+T   ++     +             +IGVP       L   
Sbjct: 99  FCRENQAPVVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALSLLKQLTLQ 154

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFE 215
             +    + EL    L     L        A +  +   H   +  G+++  +AK  ++E
Sbjct: 155 KHENQLVVLELSSFQLETTSSLLA----KAATLLNVTEDHTDRYPFGLQQYRAAKLRVYE 210

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +       +          ++  + G+            D       +   + W+ V+
Sbjct: 211 NAKVCVVNADDALTMPVRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVR 258

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +           G H   N L  L +   +     +++KAL+ F     R    +    
Sbjct: 259 GEKVLNTREMKLTGRHNYTNALAALALADAVGIPRSSSLKALTTFTGLSHRF---QLVFE 315

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S +AA+  L       +G    +LG   +  + S      L   
Sbjct: 316 HNGVRWINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRF 365

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
           L   +I  ++  G     L +  P    +   ETM+   + +  SL  GD+V++    +S
Sbjct: 366 LQGDHI-KIYCFGRDGEQLAELRPEVSQLT--ETMEQAMILLSKSLAPGDMVLLSPACAS 422

Query: 453 ---------NSCGFYRLINLL 464
                        F RL   L
Sbjct: 423 LDQFRSFEQRGDEFARLAEEL 443


>gi|212712755|ref|ZP_03320883.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
 gi|212684671|gb|EEB44199.1| hypothetical protein PROVALCAL_03852 [Providencia alcalifaciens DSM
           30120]
          Length = 441

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/376 (17%), Positives = 127/376 (33%), Gaps = 52/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++     S   +         +IG+P     +     
Sbjct: 104 FCREADAPIVAITGSNGKSTVTSLVGEMAKSAGISV----GVGGNIGIPAVSL-LNQGHS 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A +  +   H+  +  G+E+  +AK  I++  +  
Sbjct: 159 LFVLELSSFQL----ETTSSLRAAAATVLNVTEDHMDRYPLGLEQYRAAKLRIYDNAKHC 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +             H   +    SFG +    +   + +    Q  + + +    
Sbjct: 215 IVNAQDP--------LTLPHHQELSQCTSFGLNSGDYYFDTQKRVLVAQGEVVLDVTKMH 266

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +   H+ +    A  +  T+ I    +  V                  R++  L      
Sbjct: 267 LTGQHNYMNALAALALADTVAIPREASIQVLKEYAG---------LVHRFQLVLFNRGVR 317

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L + ++  N
Sbjct: 318 WINDSKATNVGSTEAALNGL-----HVDGTVYLLLGGDGKSADFS-----SLKKYIAADN 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
              ++  G     L   +P       +ETM+     I   L  GD+V++    +S     
Sbjct: 368 Y-RLYCFGRDGQQLAQLVPE--KSVLTETMEQSMRQIAPLLKSGDMVLLSPACASLDQFK 424

Query: 453 ----NSCGFYRLINLL 464
                   F +L   L
Sbjct: 425 SFEQRGDVFAQLAKEL 440


>gi|227875254|ref|ZP_03993396.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris ATCC 35243]
 gi|269978143|ref|ZP_06185093.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mobiluncus
           mulieris 28-1]
 gi|227844159|gb|EEJ54326.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           mulieris ATCC 35243]
 gi|269933652|gb|EEZ90236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mobiluncus
           mulieris 28-1]
          Length = 505

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 126/407 (30%), Gaps = 36/407 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK---ATIIAI 113
              AV+ G  L +V+  +        +    V   + +  +LA   +  S       + I
Sbjct: 67  AQAAVEAGHKLFIVSPGIPPHNPLYRLS--AVAAPVWSEVELAWQIQQESSNRGCKWLCI 124

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GKTTT  ML   L +       + +   + G P+        VD    EL    L 
Sbjct: 125 TGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVVAEGAVDALAVELSSFQLH 180

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-- 231
                T  V+P  +V    AP H+      +E A  K++I+ G++      +  +     
Sbjct: 181 ----ATFSVQPWASVWLNFAPDHIDWHGSADEYAWDKSKIYRGVQHAAFYPVTEELPTKV 236

Query: 232 --FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                L  +        I   G     D  L      S+ +   ++L   +      G  
Sbjct: 237 LAQSGLPPERIFGLTPGIPQPGFLGVIDDVLVDRAFTSDPAKQALELARFADLEHLTGQP 296

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
              +  +  TL    +  A     +         E    R          + ID+S   N
Sbjct: 297 TPTSAILQDTLAAAGLARAYGLQPVWVQRGIREFELEHHRRAPVGVFDGVSYIDDSKATN 356

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
             +        + +    +   + ++G     G+        L ++++   +    L G 
Sbjct: 357 THA------AAASLRDVADKHAVWIVG-----GDPKGQDFHQLVKLVAP-KVKAAVLIGL 404

Query: 410 HVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV 449
                + A  ++      +        M+            GDVV++
Sbjct: 405 DPEPFRQAFAQNAPGIPLKRIEPGDNLMERTVKAATDFAASGDVVLL 451


>gi|206901118|ref|YP_002250970.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
 gi|254765999|sp|B5YEL2|MURC_DICT6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206740221|gb|ACI19279.1| UDP-N-acetylmuramate--alanine ligase [Dictyoglomus thermophilum
           H-6-12]
          Length = 464

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 134/392 (34%), Gaps = 45/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + +      S +IP+    D+L  L K         +   I + G+ GKTTT  M+ + L
Sbjct: 76  DNEEYVYAKSKNIPILHRSDLLAELTK---------EKKSIIVGGAHGKTTTTSMIALVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + K     I        V   L  +  +   G  E  ++   E       + P+I V+T
Sbjct: 127 ENNKTDPTII--------VGGELEDIGGNAKLGSGEYLVAEGDESDGSILKLNPYILVVT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +  IE I S   ++ E + + G + LN D      +  K       T    
Sbjct: 179 NIDNDHLDYYENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDIIGKIKDKKYYTYGFS 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                AD  +          +       K   V     G H   N L  +GI  IL  D 
Sbjct: 239 NADFTADNIVLNSS---GSEFDVYFRNVKLGRVKLKVPGRHNILNSLSAIGISYILGLDF 295

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +  IKAL  FH  + R    +         L+ + Y  +P  + A +  L   +      
Sbjct: 296 EQTIKALEKFHGVQRRI---QFKGVIENDVLVFDDYGHHPTEILATLETLRLYNRR---- 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALP 419
              V+         +     ++A+ LSL     V L            G     + D + 
Sbjct: 349 --LVVVFQPHRYTRTYFLSKEIADALSLS--DVVILMEIYSAGEKPIPGVSSRNIYDEIK 404

Query: 420 RS---IHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +    + ++    +      ++S L DGD+++
Sbjct: 405 KKYPELEIYLVNDIVEAATKVKSVLRDGDLLL 436


>gi|327392722|dbj|BAK10144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD [Pantoea
           ananatis AJ13355]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 124/380 (32%), Gaps = 53/380 (13%)

Query: 86  FGVDDVLGALNKLAVA---------------ARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             V     AL   A+                    ++A I+AITGS GK+T   ++    
Sbjct: 68  LIVASPGIALAHPALCEAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMA 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +             +IG+P     +       + EL    L      TH ++   A I 
Sbjct: 128 KAAGWQV----GVGGNIGLPALSL-LKAPAQLYVLELSSFQL----ETTHSLKAAAATIL 178

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +   H+  +  G+++  +AK  I+E  +       +          A+  + GI     
Sbjct: 179 NVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDGMTMPVRGADARCVSFGI----- 233

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D       +     W+  + +          +G H   N L  L +   +   
Sbjct: 234 -------DIGDYHLNKQQGSIWLRAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLP 286

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T++ AL+ +     R    +          I++S   N  S +AA+  L        G
Sbjct: 287 RSTSLSALAAYSGLPHRF---QLVHQSRGVRWINDSKATNVGSTEAALKGL-----EVNG 338

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
               +LG   +  + S      LA  L    I  ++  G    AL  AL   + V  ++T
Sbjct: 339 TLWLLLGGDGKSADFSP-----LATYLQGDRI-RLYCFGRDGDALA-ALRPDVAVR-TDT 390

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +      I   +   D+V++
Sbjct: 391 LQQAMEQIARQVQPDDMVLL 410


>gi|291288105|ref|YP_003504921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885265|gb|ADD68965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 416

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/413 (14%), Positives = 118/413 (28%), Gaps = 64/413 (15%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            VVV+   +      + P     ++     +LA A R  +   ++A+TG+ GK+T   ++
Sbjct: 49  CVVVS-PGINLRKMANAPEIYTSEI-----ELADAKRP-TDTVVVAVTGTNGKSTVTTLI 101

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L               +IG+P   A         + EL     G ++  +       
Sbjct: 102 AQILKK----CGLEAVACGNIGLPYAEAVTGGAYGAYVVELSSFQTGMLQHFSA----DC 153

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            V+T +A  H+  +  +++ A  K              L +      L+      L  K+
Sbjct: 154 VVVTNLAEDHMDRYRDMDDYADDK-----------MNLLRFLKPEGRLIIENDEYLVQKS 202

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
               G +     ++   +      +          E            N+   L     +
Sbjct: 203 SVYKGDTVRVLPEVNNGRLDFGHFYCTTDKFPLKGEHNLL--------NLSFALLAADSI 254

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                            E R      A        I++S   N  S       L+ +   
Sbjct: 255 AGLEGDVTYLTENLIGLEHRC---EFAAEINGVEYINDSKGTNIHS------TLTALKGL 305

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHV 424
            EG  I        +G   ++ +    + +     + V   G     +   L    S+ +
Sbjct: 306 PEGIVII-------LGGKDKNGNFAALKDVINEKCAGVITYGQAGEKIYSTLKDIISVPL 358

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
           + +E ++            G  VV+    +S             F  L+  + 
Sbjct: 359 YKAEGLESAVRKGAEVAEAGQKVVLSPACASFDEHRGFEHRGAHFKELVQSIR 411


>gi|161612470|ref|YP_001586435.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161361834|gb|ABX65602.1| hypothetical protein SPAB_00160 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 122/375 (32%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   I
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDRI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPRVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|56412398|ref|YP_149473.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|167550679|ref|ZP_02344436.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168234890|ref|ZP_02659948.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168262189|ref|ZP_02684162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464322|ref|ZP_02698225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|168820880|ref|ZP_02832880.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194442341|ref|YP_002039358.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194736856|ref|YP_002113144.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197361334|ref|YP_002140969.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|200387467|ref|ZP_03214079.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204926704|ref|ZP_03217906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|238911183|ref|ZP_04655020.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|62900669|sp|Q5PDC2|MURD_SALPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56126655|gb|AAV76161.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194401004|gb|ACF61226.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194712358|gb|ACF91579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|195633046|gb|EDX51500.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197092809|emb|CAR58235.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197291916|gb|EDY31266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199604565|gb|EDZ03110.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204323369|gb|EDZ08564.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205324366|gb|EDZ12205.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205342390|gb|EDZ29154.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205348968|gb|EDZ35599.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|320084369|emb|CBY94162.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322615947|gb|EFY12864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322620731|gb|EFY17591.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623917|gb|EFY20754.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322627365|gb|EFY24156.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322630672|gb|EFY27436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638108|gb|EFY34809.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322640594|gb|EFY37245.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647735|gb|EFY44220.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648084|gb|EFY44551.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322656884|gb|EFY53170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657406|gb|EFY53678.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322663725|gb|EFY59925.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322666558|gb|EFY62736.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322672283|gb|EFY68395.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322676405|gb|EFY72476.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322679502|gb|EFY75547.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322686169|gb|EFY82153.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195013|gb|EFZ80199.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200078|gb|EFZ85165.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323201101|gb|EFZ86170.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323209498|gb|EFZ94431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323212250|gb|EFZ97074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216555|gb|EGA01281.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219904|gb|EGA04382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225816|gb|EGA10036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323228642|gb|EGA12771.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323236744|gb|EGA20820.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239755|gb|EGA23802.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242197|gb|EGA26226.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323249379|gb|EGA33295.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323252288|gb|EGA36139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256622|gb|EGA40352.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262991|gb|EGA46541.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323265476|gb|EGA48972.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271736|gb|EGA55154.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 438

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 122/375 (32%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   I
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDRI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPRVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|121606305|ref|YP_983634.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|166224714|sp|A1VST5|MURC_POLNA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120595274|gb|ABM38713.1| UDP-N-acetylmuramate--L-alanine ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 478

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 82/431 (19%), Positives = 143/431 (33%), Gaps = 39/431 (9%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATI 110
           F+ HA         VV +T + A    +         V  V  AL  LA   R +     
Sbjct: 54  FVGHAAANLVDVDAVVTSTAVHADNPEVLAAREKHIPV--VPRAL-MLAELMRFKQG--- 107

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  ++   L+        +     +              D+ + E   S
Sbjct: 108 IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLNS---AGANAKLGSGDYIVVEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +  L     P +AV+T I   H+  +      +  A  +    +   GT  L  DD
Sbjct: 165 DASFLNLL-----PVMAVVTNIDADHMETYGHDFGNLKKAFVDFLRRMPFYGTAILCTDD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +  +          +      A        Q    +     ++   ++VV +  G
Sbjct: 220 PVVRQIVPEMSCPITSYGLNEEAQVRAINVRAVGAQMHFTAQRRNGVKLPDLDVVLNLAG 279

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNA 348
            H   N L  + +   L        KALS F     R + Y       G    + E Y  
Sbjct: 280 QHNVLNALAAIAVAVELNVPDAAVQKALSDFTGVGRRFQSYGELPARDGGRFTVIEDYGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN----ISHV 404
           +P  + A +S      P        VL         ++    D  +V+S +     ++ V
Sbjct: 340 HPVEVAATLSAARGAFPGR----RLVLAFQPHRYSRTRDCFEDFVKVISSHADAVLLAEV 395

Query: 405 WLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           + +G          +L  AL  +  V   + +++  +   I  +  DGD+V+   + S G
Sbjct: 396 YAAGETPIVAADGRSLARALRVAGKVEPVFVDSIHDMPQAIVDAAQDGDIVMCMGAGSIG 455

Query: 457 F--YRLINLLL 465
               +++ +L 
Sbjct: 456 LVPAKVVAMLQ 466


>gi|239947811|ref|ZP_04699564.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922087|gb|EER22111.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 479

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 130/419 (31%), Gaps = 52/419 (12%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA Q       +V+++ +  +   +       IP+        A   LA   RL+  
Sbjct: 62  FLGHAEQNITNVSYIVISSAINPNNPEIKEALERKIPII-----RRA-EMLAELMRLKCS 115

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A++GS GKTTT  ++     +       I     +     +        ++ I E 
Sbjct: 116 ---VAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN---KSTNAYLGSSNYLIAEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S           +   IA+IT I P HL  +   E +  A       L   G      
Sbjct: 170 DES-----DATFIHIPSTIAIITNIDPEHLDYYKDFETLIGAFRSFITNLPFYGFAVCCI 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSME 282
           D      L        I T     +  +                 + S   V       +
Sbjct: 225 DHKIVRKLVDDITERKIVTYGIDSEDAHIIAFNINTDIASSTFDVKISLPNVLGATIIEK 284

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N L  + +   L   +       + F   + R  +            I
Sbjct: 285 ITIPTPGRHNILNSLAAIAVGIELDFGIKAIKNGFNNFKGVKRRFTKVAEYNKAS----I 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVL-----GDMCEMGELSQSFHIDLAEVLS 397
            + Y  +P  +KA ++    I+    G+ IA+        M  + +      +D      
Sbjct: 341 IDDYAHHPEEIKATLATAKNIANKQNGKVIAIFQPHRYSRMQHLFDDFMLCFVD----AD 396

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
           +  I+ ++  G +        +L D + ++ H    ++   +D     I  +   GD++
Sbjct: 397 ILYITDIYAVGENPIEGITGQSLVDKITKNKHHDKANFLAQLDDAVGVIIDNAASGDMI 455


>gi|242238098|ref|YP_002986279.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Dickeya
           dadantii Ech703]
 gi|242130155|gb|ACS84457.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Dickeya dadantii
           Ech703]
          Length = 437

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 119/375 (31%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +  +  
Sbjct: 98  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWAV----GVGGNIGLPALAL-LKQESQ 152

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    A I  +   H + +    +   A            
Sbjct: 153 LYVLELSSFQL----ETTRSLHAAAATILNVTEDHTNRYPLGLQQYRAAKLRIYEHANVC 208

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  +                      SFG     D       +   + W+ V+ +    
Sbjct: 209 IVNADDA-------LTMPIRGADPRCLSFG----VDVGDYHLNRQQGEVWLRVKGERVLN 257

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +     +A+ AL+ F     R    +  ++      
Sbjct: 258 TREIKLTGQHNYTNALAALALADAVGIPRASALTALTTFTGLPHRF---QLVMDGKGVRW 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S +AA++ L     H +G    +LG   +  + S   H    + +     
Sbjct: 315 VNDSKATNVGSTEAALNGL-----HLDGTLHLLLGGDGKSADFSPLQHYLQGDRI----- 364

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     I   +  GD+V++    +S      
Sbjct: 365 -RLYCFGRDGAQLA-ALRPEI-ADQTETMEQAMRLIAGRVRSGDMVLLSPACASLDQFRS 421

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 422 FEHRGDEFARLAREL 436


>gi|332142423|ref|YP_004428161.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552445|gb|AEA99163.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 481

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 140/403 (34%), Gaps = 48/403 (11%)

Query: 67  LVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++VV++ +      +       IP+        A   LA   R R     IAI G+ GKT
Sbjct: 77  VIVVSSAINEQNPEIIVAREQRIPII-----RRA-EMLAELMRFRHG---IAIAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +++   +  +     +     +               + I E   S    +     
Sbjct: 128 TTTSLISTIFAEAEYDPTFVIGGLLNS---AGTNARLGKSRYLIAEADESDASFLH---- 180

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            ++P ++V+T I   H+  +     ++     +    L   G   +  DD+  + ++ + 
Sbjct: 181 -LQPMVSVVTNIEADHMDTYGGDFSKVKDTFVDFLSNLPFYGQAIVCGDDANIQEIRPRI 239

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLM 298
                ++I ++G   + D++         ++   V        ++  +  G H   N L 
Sbjct: 240 ----GRSIITYGFESHNDYRAENISLSFGKANFTVIRPDHDPLKITLNLTGNHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +    + +  I+AL+ F     R ++            + + Y  +P  ++A I+
Sbjct: 296 AIAVATDEGVNDEAIIRALAGFGGIGRRFEQLGTFNTSKGEVCLVDDYGHHPTEVRATIA 355

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
                 P        V+         ++  + D  EVL   ++  + L            
Sbjct: 356 AARANWPDK----RLVMVYQPHRFTRTRDLYEDFVEVL--SSVDALLLLDVYAASEQPIE 409

Query: 408 GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
           G    +L  ++ +   +   Y    D L   + + + DGD+V+
Sbjct: 410 GADSKSLCRSIRQRGQIEPVYVGDKDALPGILANIMQDGDIVM 452


>gi|317402449|gb|EFV83018.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Achromobacter
           xylosoxidans C54]
          Length = 510

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 107/370 (28%), Gaps = 25/370 (6%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL +LA       +  ++A+TG+ GKTT   +    L +            +   +   
Sbjct: 118 RALAELAET--REYRPRVLAVTGTNGKTTVTALTR-DLVAASGLSVLAAGNISPAALTAL 174

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +  +  D    ++ L +S        TH +    AV+  +   HL    G++  A  KA 
Sbjct: 175 MQALDADDLPQVWVLELSSF--QLETTHTLMADAAVVLNVTQDHLDWHGGMDAYARTKAR 232

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +    + T    +N DD +   +     +L    + SFG+           +     +W+
Sbjct: 233 LL---KMTRIAIVNRDDPYTVDMV---PSLAAMPVRSFGREVPELVGDMGLELGQGVAWL 286

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMT------LGIVSILTADVDTAIKALSVFHPKEGR 326
                    E V        A            L  V  L                    
Sbjct: 287 VAAEPLDFDEPVAPVRRKKDAPEPTRAKGRMSRLMPVDALRIRGIHNALNALAALQLARC 346

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM----- 381
                  + +       E + A        +  ++       G  +A L  M +      
Sbjct: 347 LDLGWGPMLRALREYAGEPHRAAFVRSIGGVDYINDSKGTNVGATVAALEGMGQPVVLIA 406

Query: 382 -GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQS 439
            G+        L  V+S  +   V L G     +   L    +     E++         
Sbjct: 407 GGQGKGQDFSPLIPVVSR-HARAVLLIGQDGPEIGRVLAATGVDCIAVESLRDAVRRAAE 465

Query: 440 SLVDGDVVVV 449
               GDVV++
Sbjct: 466 LAQAGDVVLL 475


>gi|262275080|ref|ZP_06052891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
 gi|262221643|gb|EEY72957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Grimontia hollisae CIP 101886]
          Length = 451

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 107/359 (29%), Gaps = 19/359 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y          G     AR+   + F +     
Sbjct: 105 VLAVAGTHGKTTTASMLA--WVLEDCGYQPGFLIGGVPGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +  I      +   +   G I    +
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLNAIKRQFHHLVRTVPGIGRIIAPSN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D       A          +S  +    D   +  K+ ++ S  +V   GK +       
Sbjct: 223 DDNITSTLA-------MGCWSELEFAGEDGIWKAEKRVADGSEFDVWFDGKPVG--TVKW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  V+       T   A           +R     +    T+ D+  + 
Sbjct: 274 DLIGDHNVSNALMTVAAARHVGVTPDLACDALGRFINTKRRLEHKGDFNGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A      + L+ +      RRI  + +             ++A  L   ++  ++   
Sbjct: 334 PTA----IKTTLAGLRAKVGDRRILAVLEPRSNTMKLGVHKDEIAPSLDDADVVLLFQPE 389

Query: 409 FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               ++ D            + +D L   I S    GDVV+V  SN  GF  + + L  
Sbjct: 390 HITWSVNDVAEACKAPAKTFDDIDALVAGIVSEANSGDVVLV-MSNG-GFGGIHDKLKA 446


>gi|300214728|gb|ADJ79144.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus
           salivarius CECT 5713]
          Length = 458

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 85/291 (29%), Gaps = 31/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P +AV+T I  AH+      E   +AK  I     + 
Sbjct: 163 DTIVTELSSFQLLGITEYH----PKVAVLTNIYEAHIDYHGTRENYVNAKMRIVMNQTEN 218

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +N+D+  ++ L  +S A              +     K        ++  +     
Sbjct: 219 DYFVVNWDNEEWQELSQRSKAK---------IVPFSRLGKSKDGAYVADGYLFYKEDKIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  I     +   + L+ F     R    +         
Sbjct: 270 PVDNIKVPGTHNVENALAAIAVAKIFGKSNEDIKEVLTTFSGVRHRT---QYVTTLNGRK 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + +         +  G    + +L    + G   +     L        
Sbjct: 327 FYNDSKATNMEATEK--------ALAGFNNTVVLLAGGLDRGFTFEKLEPSL-----KNK 373

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVVVV 449
           +  + + G     +  A   +      +T D             +GDV+++
Sbjct: 374 VHAMIVFGETADLMAKAGKEAGVEKIIKTKDAVSAVPEAYKVSNEGDVILL 424


>gi|221213276|ref|ZP_03586251.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
 gi|221166728|gb|EED99199.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia multivorans
           CGD1]
          Length = 465

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 92/412 (22%), Positives = 145/412 (35%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAQRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY              + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGDVPTADGGRYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A I+      P        +L         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLILAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL  +  V   + ET+D L   +     DGDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAAGKVEPVFVETVDALPEALAKVAQDGDVV 442


>gi|238797706|ref|ZP_04641201.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
 gi|238718458|gb|EEQ10279.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia mollaretii ATCC
           43969]
          Length = 491

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTIKRLDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPA 351
              + + +    + +  + AL+ F     R              +    ++ + Y  +P 
Sbjct: 298 AAAIAVATEEGIEDEDILSALAGFQGTGRRFDFLGNFPLALVNGKEGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A +      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATVKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        + +   +   L   D+++V+ 
Sbjct: 414 EAPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464


>gi|302876095|ref|YP_003844728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
 gi|307686818|ref|ZP_07629264.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           cellulovorans 743B]
 gi|302578952|gb|ADL52964.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Clostridium
           cellulovorans 743B]
          Length = 448

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 78/411 (18%), Positives = 132/411 (32%), Gaps = 56/411 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N   +     L+IPV    + L    +LA     +    II ITG+ GKTTT  ++   L
Sbjct: 80  NHKYIEKACKLNIPVI---NEL----ELAFRYFPQ-GVKIIGITGTNGKTTTTTIIYEIL 131

Query: 131 SSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
                          +IG P  +      D D  + E+               + +I+V+
Sbjct: 132 KKAAVD----AFLMGNIGYPVCSFVSQLKDNDIALMEVS----DHQLCNVIEFKTNISVL 183

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I+ AHL      +   S K  IF    K+    LN DD     L     +      +S
Sbjct: 184 TNISEAHLDFHGSYDIYKSMKKRIFNHHTKSDMAILNLDDKEVLDLTKDIKSTKKYFSFS 243

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                            +++                   G H  +N++  + +V  L  +
Sbjct: 244 SSNKLGCTITDGYIYYNNDK---------IISLDEVKIKGKHNYENVMAAIAVVKELGIE 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  L  F   E R +  +   N       ++S   N  S + A+S  +        
Sbjct: 295 NQVITDLLKTFGGVEHRIEYVKTINNID---FYNDSKATNIKSTQTALSSFT-------K 344

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I +LG     G         L E L   N+  +   G   + ++D   +  I  +   
Sbjct: 345 PTILLLG-----GLDRGHSFDSLKEYL--SNVKLIVAFGEAKIRIEDFAKKCGIPCNLVN 397

Query: 429 TMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
           ++        +S  +GDVV++    ++             F   IN L  +
Sbjct: 398 SLGEATEIAYNSASEGDVVLLSPACAAWDQFKDFEVRGNLFKEYINNLEAK 448


>gi|255027424|ref|ZP_05299410.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-003]
          Length = 420

 Score = 52.6 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 89/290 (30%), Gaps = 31/290 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              +   EL    L  +       +PHI+VIT I  AHL   +   E   AK  I +   
Sbjct: 161 SDQYISMELSSFQLMGVE----TFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
              ++ +N+D    + L  ++ A  I    +         Q        +   +    + 
Sbjct: 217 TDDSLVINWDQEELKNLTKQTKAQVIPFSTT---------QRLGQGSYVQNGNIMFNDEV 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N+L ++ +   L    +  +  L  F   E R    +  +    
Sbjct: 268 IGERDNILLPGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRT---QFVVEWQG 324

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
               ++S   N  + ++A+           G            G    +   +L      
Sbjct: 325 RKFYNDSKATNILATQSALKGFKNPVVLLAG------------GLDRGNSFDELLPFFK- 371

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            N+  + + G     +        I VHY + ++            GD++
Sbjct: 372 -NVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDII 420


>gi|219871375|ref|YP_002475750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
 gi|219691579|gb|ACL32802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Haemophilus parasuis SH0165]
          Length = 462

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/322 (17%), Positives = 101/322 (31%), Gaps = 33/322 (10%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DF + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSDFFVIEADEYDSAFFDKRSKFVHYNPKTLIINNIDFDHADIFDDLKAIQRQFHHLIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + + G I     D   +              YS  +    D         S+ S   +  
Sbjct: 214 MPQNGCILSATSDENVQNTLK-------MGCYSEQQFIGQDQDWYAEPLSSDYSHFAIYH 266

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           + +   EV  + +G H   N LM +         V+ A   L+ F     R +       
Sbjct: 267 KQQKAGEVEWNLLGAHNMHNGLMAIAAAHHAGVSVEQACLGLNSFINANRRLE----VKG 322

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDL 392
           +     + + +  +P ++ A I  L        G+   +L  + E    +        ++
Sbjct: 323 EVNGITVYDDFAHHPTAILATIDAL----RGKVGKEQRILA-VLEPRSNTMKMGVHKEEI 377

Query: 393 AEVLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           A  L       V++            + DAL +     +S ++D L   I       D +
Sbjct: 378 APSLKDA--DAVFVYQPDTIPWQVSTITDALSQ--PAQWSASLDELVELIVKEAKPTDHI 433

Query: 448 VVKSSNSCGFYRLINLLLEEFP 469
           +V  SN   F ++   LLE  P
Sbjct: 434 LV-MSNG-AFGQIHQKLLERLP 453


>gi|293376048|ref|ZP_06622301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
 gi|292645349|gb|EFF63406.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sanguinis PC909]
          Length = 449

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/417 (16%), Positives = 121/417 (29%), Gaps = 55/417 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL-------AVAARLRSKATIIAITGSVGKTT 121
           +++ D    + +  IP   V  +L    +L          A    +A  I ITG+ GKTT
Sbjct: 68  LLDRDFDLIVKNPGIPYLKVP-LLKRAQELKIPIITEVELAFEICEAPFIGITGTNGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L              N   V   +A++       + EL    L        L
Sbjct: 127 TTTLIYEMLKESTLN---PLIAGNIGEVATEVAKVAQANQVLVTELSSFQLM----GMPL 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I+++  I  AHL     ++E   AK  + +          N +D        ++ A
Sbjct: 180 FRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQTKA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    S           +       +  +  + +           G H  Q++L  + 
Sbjct: 240 TCIPFSLS----------EKVEGAYILEGAVYFKEEWIIDVKDILLKGDHNLQDVLGAVA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D++     L  F   + R    +           + S   N  + + A+    
Sbjct: 290 VSLLYGCDLEAIRTVLKRFAGVKHRL---QFVGEIKGVKYYNNSKATNIIATQTALKAFD 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                  G  I + G +          H     V     I  +   G      K      
Sbjct: 347 -------GPIILIAGGL-------DRGHDLSGLVPYFNKIKSIVTYGETKHRFKALADEH 392

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
            +     + +D          + GD+V+     +S             F  L+  L 
Sbjct: 393 LMPCTVYDHLDQAVEDAYEQAIAGDIVLFAPACASWDQYQNFEQRGDHFIGLVEGLK 449


>gi|319764374|ref|YP_004128311.1| udp-n-acetylmuramoylalanine/d-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|330826593|ref|YP_004389896.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
 gi|317118935|gb|ADV01424.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans BC]
 gi|329311965|gb|AEB86380.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Alicycliphilus
           denitrificans K601]
          Length = 593

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/401 (15%), Positives = 109/401 (27%), Gaps = 36/401 (8%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEML 126
           +  TD+   + + S     V   L   ++     R R      ++AITG+ GKTT   + 
Sbjct: 167 LAPTDVAPVVIAASARQIIVGGELSLYSEALHELRTRHGYAPAVLAITGTNGKTTVTSLT 226

Query: 127 TIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            + +    K+ A  G+     +             +  + EL    L           P 
Sbjct: 227 GLLVDCAGKSVAVAGNIGPTLLDTLGERLDAGQLPEVWVLELSSFQLDGA----QGFEPT 282

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFE--GLEKTGTIFLNYDDSFFELLKAKSHALG 243
            A +  +   HL     ++  A AKA IF   GL           D     ++ K     
Sbjct: 283 AATVLNVTQDHLDWHGSMQAYAQAKARIFGAAGLMILNRDDPLVMDMLPPPVRVKLQKPQ 342

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +FG            +  S  +W+                   +    LM    +
Sbjct: 343 LRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRAHDADETARRGKVQEAELHVQRLMPADAL 402

Query: 304 SILTADVDTAIKALSVFHPKEG---------------RGKRYRCALNQGFFTLIDESYNA 348
            I          A        G                  R             D+S   
Sbjct: 403 RIRGRHNALNALAALALAQAAGCALAPMLYGLREYRGEPHRVEPVGMVREVEYFDDSKGT 462

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +      V +      + R + +LG   +  + S      +A            L G
Sbjct: 463 NVGAT-----VAALTGLGADRRLVLILGGDGKGQDFSP-LAAPVARYARAA-----VLIG 511

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                ++ AL    + +  + T+             GD V+
Sbjct: 512 RDAPQIRAALEGCGVPLLDAATLPEAVQLASQRAHAGDAVL 552


>gi|254510884|ref|ZP_05122951.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534595|gb|EEE37583.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacteraceae
           bacterium KLH11]
          Length = 469

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 117/385 (30%), Gaps = 35/385 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLT 127
           V   +VA+     +PV   +D+       A        +   +IA+TGS GK+TT  ++ 
Sbjct: 87  VPNPVVAAALEAGVPV--DNDIGLFFRSFAGPEWHNYDTPPRVIAVTGSNGKSTTAALIH 144

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L+   ++         +IG  +       D    + EL          L   + P +A
Sbjct: 145 HILTEAGRS----AQLAGNIGRGVLDIDPGGDGSVVVLELSSYQ----TELARALTPDVA 196

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF---ELLKAKSHALGI 244
           V T ++P HL    G+    +AK  +F        +    +         L        +
Sbjct: 197 VFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGIDEAEGAFLAGQLAEGPSDDRV 256

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             +    K     +Q+   K    +     Q     +  +    G H  QN         
Sbjct: 257 IRVSVARKLTGPGWQVFARKGFLSEYRKGRQAGAIDLRDIRGLPGAHNHQNACAAYAACR 316

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L         AL  F     R    +     G  T +++S   N  S   A++   +I 
Sbjct: 317 ALGLAPRVIEDALHNFPGLPHRS---QIIAEAGGVTYVNDSKATNVDSALKALNAFGKIR 373

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
               G          E G  + +         +  ++   ++ G        A+      
Sbjct: 374 WICGGLE-------KEGGLDALNG--------ARDHVVKAYVIGREAAGF--AMQLEAEA 416

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
               TM        +    G+VV++
Sbjct: 417 QVCTTMSAAVEQAMADAQPGEVVLL 441


>gi|220904382|ref|YP_002479694.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|254766049|sp|B8IZT9|MURD_DESDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219868681|gb|ACL49016.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 434

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 107/357 (29%), Gaps = 56/357 (15%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++ +A R      ++A+TG+ GKTTT  +    L               +IG PL+
Sbjct: 104 EILAEMELAWRYLENEPVLAVTGTSGKTTTASLAAAMLHEQGYAVFLG----GNIGTPLS 159

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +     D  + E+    L           P   ++  I P HL     + E   AK 
Sbjct: 160 EYVLSGHKADVLVLEISSFQL----QTCSTFCPRAGILLNITPNHLDYHKDMAEYTEAKF 215

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +F   ++     L         L A+      +   S     +    +    + +E   
Sbjct: 216 RLFRCQDEGDLAVLG---ESLRSLAARYGLKARQVYVSDAGRFSGSSLMGAHNRVNE--- 269

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                                            +     + A +AL+ F P   R     
Sbjct: 270 -------------------------EAAWQACRLFGVSEENAARALARFAPLPHRL---E 301

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     +++S     +S+K A+                V G   + G+L+      
Sbjct: 302 RVRELEGVLFVNDSKCTTVSSLKVALEAFD-------RPVRLVCGGKFKGGDLAG----- 349

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               L    +S V L G      + A    + + +  +++     + +S   GDVV+
Sbjct: 350 -LADLVKNRVSAVALFGAGREHFERAWQGLVPMTWHASLEPAVKHLAASACRGDVVL 405


>gi|217967632|ref|YP_002353138.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
 gi|254766000|sp|B8E324|MURC_DICTD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217336731|gb|ACK42524.1| UDP-N-acetylmuramate/alanine ligase [Dictyoglomus turgidum DSM
           6724]
          Length = 464

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 142/410 (34%), Gaps = 45/410 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + +        +IP+    D+L  L K         +   I + G+ GKTTT  M+ + L
Sbjct: 76  DNEEYVYAKERNIPILHRSDLLADLTK---------EKKSIIVGGAHGKTTTTSMIALVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + K     +        V   L  +  +   G  E  ++   E       + P+I VIT
Sbjct: 127 ENNKIDPTIL--------VGGELEDIGGNAKLGNGEYLVAEGDESDGSILKLDPYILVIT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +  +E+I     ++ E + K G   LN D      +  K       T    
Sbjct: 179 NIDNDHLDYYKSLEKIKDTFLKVIEKVPKGGFAVLNLDCENVRDIIRKIKNKEYYTYGFS 238

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                AD  +          +       K   V     G H   N L  + +  IL  D 
Sbjct: 239 NADFKADNIVLNLS---GSEFDVYFRNEKLGRVKLRVPGKHNILNSLSAIAVSKILGLDF 295

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +T  KAL  F   + R    +         L+ + Y  +P  +KA +  L   +      
Sbjct: 296 ETTTKALERFQGVQRRI---QLKGIIEDDILVFDDYGHHPTEIKATLETLRLYNRR---- 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVLALKDALPR- 420
              V+         +     ++AE LSL ++   + ++ +G           + D +   
Sbjct: 349 --LVVVFQPHRYTRTYFLSKEIAEALSLGDVIILTEIYSAGEKPIPGVSSKNIYDEIREK 406

Query: 421 --SIHVHYSETMDGLFLFIQSSLVDGDVVV-VKSSNSCGFYRLINLLLEE 467
             ++ V+  + +       +S L  GD+++ + + N    +++   LL  
Sbjct: 407 YPNLEVYLVDNIIEAASKAKSILKKGDLLLTLGAGNV---WKVGEALLAR 453


>gi|260772145|ref|ZP_05881062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
 gi|260613012|gb|EEX38214.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio metschnikovii CIP 69.14]
          Length = 466

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 115/364 (31%), Gaps = 23/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT      +  Y         +G     AR+   + F +     
Sbjct: 118 VLAVAGTHGKTTTASMLT--WILEQCGYQPGFLVGGVLGNFDLSARLGESMFFVVEADEY 175

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   L   G +F    
Sbjct: 176 DSAFFDKRSKFVHYHPRTLILNNLEFDHADIFDDLEAIKRQFHHLIRTLPGNGRVFAPQQ 235

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           DS    + ++      + I   G+ +       K        +       +  +V    I
Sbjct: 236 DSALADVLSRGCWSEREFIGQQGQWQA------KKHNPQGSQFAVYFQDQRVGDVEWSLI 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +    D A +AL+ F       +R      +   T+ D+  + 
Sbjct: 290 GDHNVNNALMAIAAARHVGVTPDLACQALASF---INTKRRLEQKGQENGVTVYDDFAHH 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A       + +++        +       ++G    +         S      V+L  
Sbjct: 347 PTAIELTLSGLRNKVGSEKIIAVVEPRSATMKLGVHKGTL------AASFAQADSVYLFQ 400

Query: 409 F-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +    D + +      + S  +D L   I ++   G  ++V  SN  GF  + N LL
Sbjct: 401 PNELAWSVDEVAQQCSSPAYVSNNIDDLVERICAAAKPGTHILV-MSNG-GFGGIHNKLL 458

Query: 466 EEFP 469
               
Sbjct: 459 ATLK 462


>gi|56476226|ref|YP_157815.1| UDP-N-acetylmuramate--L-alanine ligase [Aromatoleum aromaticum
           EbN1]
 gi|81358257|sp|Q5P6Z7|MURC_AZOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56312269|emb|CAI06914.1| UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)
           (UDP-N-acetylmuramoyl-L-alanine synthetase), gene: MURC
           OR RSC2843 OR RS00262 [Aromatoleum aromaticum EbN1]
          Length = 471

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 83/415 (20%), Positives = 145/415 (34%), Gaps = 44/415 (10%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           + HA +   GA  VV++T +      + +     V  V  A   LA   RL+     IAI
Sbjct: 55  VGHAAENVAGADAVVISTAVRNDNPEVVAARSRHVPIVPRA-QMLAELMRLKHG---IAI 110

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  ++   L+        +     +              DF + E   S   
Sbjct: 111 AGTHGKTTTTSLVASILAEGGMDPTFVIGGKLN---AAGANARLGKGDFLVAEADES--- 164

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFF 232
                  L+ P I+VIT I   H+  +             F + L   G   L  DD   
Sbjct: 165 --DASFLLLTPVISVITNIDADHMDTYGHDFARLKQAFVDFLQHLPFYGVAVLCEDDPHV 222

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG---KSMEVVHHGIG 289
             +      L  K +  +G S++A+ +    +    +   +V         + +  +  G
Sbjct: 223 RSI----MPLVSKQVVRYGLSESANIRAENVRAEGGRMLFDVVRTNGSVSRLPIELNLPG 278

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA------LNQGFFTLID 343
            H   N L  + + + +       IKAL+ F     R +RY                 + 
Sbjct: 279 VHNVLNALAAIAVATEVQVPDAAIIKALAEFRGVGRRFQRYGEVALRDAEGTPQGSCTLI 338

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--- 400
           + Y  +P  M A ++      P        VL         ++    D  +VLS  +   
Sbjct: 339 DDYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVKVLSTVDALL 394

Query: 401 ISHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           ++ V+ +G          +L  A+  +  V   + E +D +   + +++ DGDVV
Sbjct: 395 LAEVYAAGEAPVVAADGRSLARAIRVAGKVEPVFVEDIDEMPATVLAAVRDGDVV 449


>gi|89075543|ref|ZP_01161948.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
 gi|89048683|gb|EAR54255.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium sp.
           SKA34]
          Length = 462

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 106/364 (29%), Gaps = 29/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 117 VMAVSGTHGKTTTASMLA--WILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 174

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I     
Sbjct: 175 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLKAIQRQFHHLVRTVPGNGRILAPKG 234

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +              +S  +    D   R  K  ++ S  +V L    +       
Sbjct: 235 VKNIDETLE-------MGCWSELEYIGGDGHWRAEKHHADGSVFDVYLDSDIVG--TVHW 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  +        T   A           +R          T+ D+  + 
Sbjct: 286 PLVGDHNVNNALMAIGAARHVGVTPDLACEALAKFINTKRRLELKGEVNGVTVYDDFAHH 345

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +   + R +AVL    +  ++G         L      +    V+
Sbjct: 346 ---PTAIELTLGGLRAKVNQSRILAVLEPRSNTMKLGVHKDDLAPSL------HAADQVF 396

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                ++    + +        + S  +D L   I S    GD ++V  SN  GF  + +
Sbjct: 397 FFQPPNIPWSVEEIAEQCSQPAYCSADLDDLVNNITSKAQPGDTILV-MSNG-GFGGIHD 454

Query: 463 LLLE 466
            LL 
Sbjct: 455 KLLA 458


>gi|292489592|ref|YP_003532482.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|292898188|ref|YP_003537557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Erwinia amylovora ATCC 49946]
 gi|291198036|emb|CBJ45139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase (murein peptide ligase [Erwinia amylovora ATCC
           49946]
 gi|291555029|emb|CBA23087.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora CFBP1430]
 gi|312173768|emb|CBX82022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 450

 Score = 52.6 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/370 (17%), Positives = 116/370 (31%), Gaps = 38/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M    L +       +       GVP             F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMTAWILQACGYEPGFVIG-----GVPGNFEVSANLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   +  +  I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRAKFVHYCPRTLILNNLEFDHADIYDDLRAIQKQFHHLVRIVPGQGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    LK            + G++                 W  +    +  +V  
Sbjct: 220 P---EQDANLKQVMSMGCWSEHETVGENGCWQVNKLSPDASC---WEVLLDGERVAQVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N +M +     +    + A +AL+ F     R +    +     +    + 
Sbjct: 274 SLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRGESNGIKVY----DD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A ++ L      G  R +AVL    +  +MG         L          
Sbjct: 330 FAHHPTAIHATLAALRG-KVGGTARILAVLEPRSNTMKMGISKDDLAPALGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I  +   GD ++V  SN  GF
Sbjct: 383 EVFLYQPHHIPWQVSQVADACIQ--PAHWSADIDTLVEAIAKTAHPGDTILV-MSNG-GF 438

Query: 458 YRLINLLLEE 467
             +   LL+ 
Sbjct: 439 GGIHQKLLDR 448


>gi|127514072|ref|YP_001095269.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
 gi|126639367|gb|ABO25010.1| UDP-N-acetylmuramate [Shewanella loihica PV-4]
          Length = 479

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 125/369 (33%), Gaps = 24/369 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++      G     +     ++    D  F + E   
Sbjct: 128 VLAVSGTHGKTSTSSMLA---WILEDCGYAPGFLIGGVPQNFGVSARLGDSPFFVVEADE 184

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R      +P   VI  +   H   F  ++ I      +   +   G +    
Sbjct: 185 YDSAFFDKRSKFVHYQPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGQGKVIWPS 244

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  +             ++     +     +       S+           +    
Sbjct: 245 ASDAVREVIDMGCWSE---QETYNLMAGSPGWYSELLSEDGHSFELFFDGESQGVLDWSL 301

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H  +N  M +     +      AI+AL+ F P + R +     +       + + + 
Sbjct: 302 IGQHNVENATMAIAAARHVGVKPAAAIEALTRFAPPKRRME----LIGTVNDIAVYDDFA 357

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HID-LAEVLSLYNISHV 404
            +P ++  A ++    +  GEGR I VL    E    +     H D LA  ++L + +++
Sbjct: 358 HHPTAI--ATTLQGCRAKVGEGRIIVVL----EPRSNTMKRGVHKDTLAGSMALADAAYL 411

Query: 405 WLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + +               + V     +D L   + ++   GD ++V  SN  GF  L   
Sbjct: 412 YQADNIDWDVEAAMAKAELPVTVLYQIDELADSVTAAARPGDTIIV-MSNG-GFGGLHGK 469

Query: 464 LLEEFPAIQ 472
           LL +   I+
Sbjct: 470 LLAKLEEIK 478


>gi|238019066|ref|ZP_04599492.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
 gi|237864321|gb|EEP65611.1| hypothetical protein VEIDISOL_00928 [Veillonella dispar ATCC 17748]
          Length = 460

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 131/416 (31%), Gaps = 45/416 (10%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH+  ++      G   VV +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNKEYV-----NGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L         I          L  +    
Sbjct: 105 TDG---------IAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E   S           +RPH  VIT I   H+ ++  ++ + +A  E  E L 
Sbjct: 153 KGHFSVVEADES-----DGSFLKLRPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           ++G   +  D+     + ++ +        ++G S N D+  +           +V  +G
Sbjct: 208 ESGKAIVCGDNENIRYIMSRVNR----NFITYGLSDNNDYVAKNIHYVDSTLVYDVYHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++E +   +         +   IV+     V+T I    +      + +        G 
Sbjct: 264 VNIERIRLRVPGEHNVLNSLAAFIVAHDCCGVETRIITKGLGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMK-------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRFTRTSLLKDEFATAFTNADEVY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +       +     H +           V+Y  ++D L   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPIPGIDGHTIPNAIKAATGQDVNYVPSVDDLPEVLAKVVRPNDLV 436


>gi|114330666|ref|YP_746888.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
 gi|114307680|gb|ABI58923.1| UDP-N-acetylmuramate [Nitrosomonas eutropha C91]
          Length = 460

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 105/385 (27%), Gaps = 35/385 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLA 154
             LA          ++A+ G+ GKTTT  ML   L          IG    + G+   L 
Sbjct: 93  QWLAQHLL--HNRWVLAVAGTHGKTTTSSMLAWILEYAGLAPGFLIGGVPENFGLSARLG 150

Query: 155 RMPVD---VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +  +     F + E                  +P  AV+  +   H   F  +  I   
Sbjct: 151 HIDGEQTLSPFFVIEADEYDTAFFDKRSKFVHYQPKTAVLNNLEFDHADIFPDLAAIERQ 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
              +   + + G I +N  D   + +  +     ++        +      +      + 
Sbjct: 211 FHHLVRIVPRNGLIIVNGCDETLQRVLHQGCWTPVEKFGVDEGWQITTEHDQSQSIRFQG 270

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +       E                      +    +            +      
Sbjct: 271 EPQGILHWELLGEHN-RMNALAALAAARHAGVPAPLGIEALSHFKNVKRRMELRGIIHDI 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           +         T I  +       +  +  +L+ + P     ++ V  D            
Sbjct: 330 HIYDDFAHHPTAIQTTLAGLRDKIG-SARILAVLEPRSNTMKLGVWQDSL---------- 378

Query: 390 IDLAEVLSLYNISHVWLS----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                  SL     V+      G+ V +   +L     +H+   +  +   I ++   GD
Sbjct: 379 -----AASLNQADQVFCYAHQMGWDVASALTSLSNKADIHH--DLSAMISAITTAAQPGD 431

Query: 446 VVVVKSSNSC--GF-YRLINLLLEE 467
            +++  SN    G   +L++ L  +
Sbjct: 432 HILI-MSNGSFNGLYDKLLDALRNQ 455


>gi|166033152|ref|ZP_02235981.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
 gi|166027509|gb|EDR46266.1| hypothetical protein DORFOR_02874 [Dorea formicigenerans ATCC
           27755]
          Length = 515

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/379 (16%), Positives = 124/379 (32%), Gaps = 37/379 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L            IA++G+ GKTTT  M++  L + +                  
Sbjct: 157 ELLGQLMTNY----DIP-IAVSGTHGKTTTTSMISHILLAGEMDPTISVGGILK------ 205

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  E+ ++   E         P I+VI  I   HL  F  +E+I ++   
Sbjct: 206 --AIGGNIRVGNSEIFVTEACEYTNSFLSFFPKISVILNIDEDHLDFFKDLEDIRNSFHR 263

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + L K GT+ +N D    + +           + ++G + +A +              
Sbjct: 264 FAKLLPKDGTLVINGDIDRLDEI----TGDLDCKLVTYGTNPSATYHAANVTHDELGEAS 319

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              ++                 N+   L  +++          A        G  +R+  
Sbjct: 320 FDLVKNGEFVDRISLSV-SGDHNVSNALAALAVADLLDVNVSVAKKGLKEFHGTDRRFEY 378

Query: 333 ALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                  T+ID+  +           A+      +     PH   R  A+  +  E   L
Sbjct: 379 KGETNGVTIIDDYAHHPTEIAATLTAATHYPHREIWCIFQPHTYTRTKALFPEFVE--AL 436

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
           S + H+ +A++ +      +   G     + D L  +    +Y  + + +  F  +    
Sbjct: 437 SHTDHVIMADIYAARETDTL---GVSSKQIADELKAKGCDAYYFPSFEEIENFCLTHCQK 493

Query: 444 GDVVVVKSSNSCGFYRLIN 462
           GD V++      G   ++N
Sbjct: 494 GD-VLIT----MGAGDVVN 507


>gi|304396923|ref|ZP_07378803.1| UDP-N-acetylmuramate [Pantoea sp. aB]
 gi|304355719|gb|EFM20086.1| UDP-N-acetylmuramate [Pantoea sp. aB]
          Length = 450

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 117/369 (31%), Gaps = 36/369 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       I       GVP             F + E 
Sbjct: 105 VLAVAGTHGKTTTAGMAAWILEACALEPGFIIG-----GVPGNFDVSAKLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  +  I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
              D   + + A          +S  +S     + +  K  ++ S  E+     K  EV 
Sbjct: 220 PEHDPNLKQVMA-------MGCWSEQESVGEHGRWQAKKLTNDASHWEIWLDGEKVGEVN 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +    + A +AL+            R  L         +
Sbjct: 273 WGLVGEHNMHNGLMAIAAARHVGVKPEDAGQALN-------TFINARRRLELRGEVNSIK 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNI 401
            Y+       A ++ L+ +     GR   +   + E    +        DLA  L+    
Sbjct: 326 VYDDFAHHPTAILATLAALRSKVGGRARIL--AVLEPRSNTMKMGVSKNDLAPSLARA-- 381

Query: 402 SHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V+L   H     + D     I   H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 382 DEVFLFQPHHIPWQVSDVAEACIPPAHWSADIDTLVEMVVKAAQPGDTILV-MSNG-GFG 439

Query: 459 RLINLLLEE 467
            +   LL+ 
Sbjct: 440 GIHQKLLDR 448


>gi|302876612|ref|YP_003845245.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
 gi|307687286|ref|ZP_07629732.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulovorans
           743B]
 gi|302579469|gb|ADL53481.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulovorans
           743B]
          Length = 461

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 125/394 (31%), Gaps = 42/394 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             +  +   + S  + ++P+F         L ++    +       IA++G+ GKTTT  
Sbjct: 79  AAIAKDNPELVSANNRNLPMF----TRAEFLGEIMKDYKHN-----IAVSGTHGKTTTTS 129

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L   +K    +   +  I             D+ + E        + F      P
Sbjct: 130 MVSHILLKGEKDPTILVGGSLDIINGYVRTG---KSDYFLTEACEYKGSFLSFY-----P 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  I   HL  +  I+EI  A  +    + + G + +N +D     +   S+   I
Sbjct: 182 TIGIILNIDADHLDYYKDIDEIEEAFQKFAYLIPRDGYLIVNNEDERAVNVAKNSNCNTI 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
                 G     +            S+       +   V     G H   N L  +    
Sbjct: 242 TFGIDNGDIIAKNVTFNSL---GHGSFDMFYKGCEYFHVTLKVPGRHNVLNSLSAMAAAI 298

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL---- 360
               + +     +  F     R +      +      + + Y  +P  +KA +       
Sbjct: 299 ASGIEPNHIKAGIESFGGTHRRFEFKGTVDD----ITVIDDYAHHPTEIKATLEACKNVS 354

Query: 361 -----SQISPHGEGRRIAVLGDMCEM-GELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
                    PH   R  ++  D  E  G +++    D+    +    + +         L
Sbjct: 355 HNRLICVFQPHTYTRTYSLFKDFSECFGGITKLVLADI--YAAREKDTGIV----SSQRL 408

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            DA+    +      + + +  F+++    GD++
Sbjct: 409 GDAIRLNGVDCINLHSFEEITNFLKTYAKAGDMI 442


>gi|167838002|ref|ZP_02464861.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia thailandensis
           MSMB43]
          Length = 465

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 84/410 (20%), Positives = 142/410 (34%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMS 170
           AI G+ GKTTT  ++   L++       +        +    A   +   DF + E   S
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGR----LTSAGANARLGTGDFIVAEADES 164

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               +        P I VIT I   H+  +             F    +    + +    
Sbjct: 165 DASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQA---FIEFTQRLPFYGSAVVC 216

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
             +    +   L  K +  +G S +A  +    +    +    V   G+    VV +  G
Sbjct: 217 IDDANVRQIVPLISKPVVRYGFSADAQVRAENVEARDGRMHFTVLRDGREPLPVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNA 348
            H  QN L  + I + L        +AL+ F+    R +RY    +  G    + + Y  
Sbjct: 277 LHNVQNALAAIAIATDLDVADAAIQQALAEFNGVGRRFQRYGEIPVADGGAYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G       +  AL  AL  +  V   +   +D +   +      GDVV
Sbjct: 393 AAGEAPISTANGDALSRALRAAGKVEPMFVAAVDEVPDALAKLARAGDVV 442


>gi|224532035|ref|ZP_03672667.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
 gi|224511500|gb|EEF81906.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           valaisiana VS116]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/451 (12%), Positives = 120/451 (26%), Gaps = 77/451 (17%)

Query: 61  VQKGAGLVVVNTDMVASIG---------SLSIPV--------------FGVDDV----LG 93
           ++ GA +V+ +    A +             I                  V +       
Sbjct: 30  LKHGAKVVITDLKSEAELALSIDSLKDFDDQIRYVLGKHDADDFKRADIVVKNPSVKPNN 89

Query: 94  ALNKLAVA-------ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
              KLA           + +K  IIA+TG+ GK+T   +L   L          G+    
Sbjct: 90  EYLKLAKRVETDISLFLIFNKNPIIAVTGTKGKSTLASLLYQVLKKKYPRAKLGGNIGVS 149

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              PL+           I EL                P ++++T I   H + +   ++ 
Sbjct: 150 ---PLSFFDQLDGRSPLILELSS----WQLQSLENFNPILSIVTNIYNDHQNYYLNFDDY 202

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
              K++IF        I  +           K  +           S+            
Sbjct: 203 IIDKSKIFVNQTSGIVIIQDKAYY-------KYFSKFESKAKVILFSEFNPCDFDLDVFY 255

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
             +  +    +          +              ++I    V   +            
Sbjct: 256 CNKGKVYFNNKLIGSFSESQVVFMIPKLITFFVSYYLNIGFNHVFQILNNFKGIE----- 310

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R             +++ +  P S   ++  L       +     ++G     G   +
Sbjct: 311 -HRLEFVKLIQNVMFYNDTASTIPDSTVLSVKSLKT----NDNHINLIVG-----GTDKE 360

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGD 445
                 +++++    + + + G   + +   L +S I     +++             GD
Sbjct: 361 LDFSSFSKIINCVK-TWILIKGSATVKIIKILEKSSIQYFVFDSLKDSVNHALKVSSPGD 419

Query: 446 VVVVK-SS-----------NSCGFYRLINLL 464
           +V+   +S               F  L+N+L
Sbjct: 420 IVLFSPASASFELFNNEFDRGLQFKNLVNML 450


>gi|254419677|ref|ZP_05033401.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
 gi|196185854|gb|EDX80830.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas sp. BAL3]
          Length = 470

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 82/419 (19%), Positives = 145/419 (34%), Gaps = 50/419 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATII 111
           GHD     V +G   VV +T + A    +       +  V  A   LA   RL+     I
Sbjct: 63  GHD--AAHVSEGVSAVVYSTAVKADNPEMKAARERRIPLVRRA-EMLAELMRLQFS---I 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           A+ G+ GKTTT  M+   L +       +     +            D D+ + E   S 
Sbjct: 117 AVGGTHGKTTTTSMVAALLDAAGLDPTVVNGGIIN---AYGTNAKVGDGDWIVVEADES- 172

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     ++  +A++T I P HL ++   + +  A  +  E +   G   +  D   
Sbjct: 173 ----DGSFLRLKSTVAIVTNIDPEHLDHYGDFDAVRKAFVDFVENIPFYGFAAVCLDHPE 228

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----GKSMEVVHHG 287
            + L A   ++  + + ++G +  A  +    +   + +  +V +Q     +   +    
Sbjct: 229 VQKLVA---SIDNRRLVTYGINPQAMVRADNCQMGPDGARFDVVIQNGETYRIENLHLPM 285

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G+H   N L  + +   L    +   + L+ F   + R               I + Y 
Sbjct: 286 AGWHNVSNALAAIAVARELDVSDEAIREGLAGFGGVKRRFTTTGVVNGVR----IVDDYG 341

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVW 405
            +P  + A +    Q+    EGR IAV+           +   DL      +  +   V 
Sbjct: 342 HHPVEIVAVLKAARQV---TEGRVIAVVQ------PHRYTRLRDLMNEFSTAFSDADSVI 392

Query: 406 LS-----------GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++           G    AL D + R    HV   E    L   I+     GDVVV+  
Sbjct: 393 VADVYPAGEPPIEGVDKHALTDGIRRYGHRHVQALENAAVLPRLIKEEARPGDVVVLLG 451


>gi|72161515|ref|YP_289172.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
 gi|109892752|sp|Q47QW8|MURC_THEFY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71915247|gb|AAZ55149.1| UDP-N-acetylmuramate--L-alanine ligase [Thermobifida fusca YX]
          Length = 472

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 120/371 (32%), Gaps = 34/371 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M+T+ L  +      +        V   L       D  + E   S
Sbjct: 118 VAVAGTHGKTTTTSMITVVLQHLGAMPGYVIGGQL---VTTGLGADAGADDIIVVEADES 174

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                     ++ P +AVIT +   HL N+  +EEI     +    + +     +   D 
Sbjct: 175 -----DGSFLMLSPRVAVITNVEADHLDNYGDLEEI---HDKFAAFIGRVSETVVVGVDD 226

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                 A+        + ++G++  AD+++R      +       +   + + VH  +  
Sbjct: 227 PGARRVAEVARQRGLKVLTYGEADTADYRVRDITV--DGFTTMFTIDPPTGDPVHCTLPL 284

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N L     V++          A+       G  +R+         ++  +SY  +P
Sbjct: 285 PGRHNTLNAAAAVAVADTIGYDPEVAVEGLAEFAGAARRFEFKGEANGVSVY-DSYAHHP 343

Query: 351 ASMKAAISVLSQ----ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             + A +          +  G      V+     +   ++ F  + A   +L     V +
Sbjct: 344 TEIAADLDAARAALDSQAAKGGKAGRIVVLFQPHLYSRTRIFAEEFA--AALTKADEVVV 401

Query: 407 SG-------FHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS-- 454
            G              + +        V+Y    D     + S    GD+V+   +    
Sbjct: 402 LGIYAAREDPEPGVTAELITERIGHDRVYYRPDRDAAVECVVSVAQPGDIVLTMGA-GDV 460

Query: 455 CGFY-RLINLL 464
                R++  L
Sbjct: 461 TELGPRIVEAL 471


>gi|291533196|emb|CBL06309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Megamonas
           hypermegale ART12/1]
          Length = 454

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 113/383 (29%), Gaps = 44/383 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             A   +KA I A+TG+ GKTTT  +L   + +I          N    +     R+  +
Sbjct: 99  EFAYKLAKAPIFAVTGTNGKTTTTMLLGELMKTIYGEDNVGVGGNIGTPLCEECYRIG-E 157

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    +              A I  + P HL+    +E   + K ++F    +
Sbjct: 158 NGCIVAEISSYQMEASSDFAT----KGAAILNVTPDHLARHKTMEVYQAEKEKVFAHHTE 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LNYDD     +  ++ +       S         +L +     +   +       
Sbjct: 214 ENFLVLNYDDVHTRDMANRAKSTICFFSSS--------QELEEGAFVKDNQLVIRWKGLM 265

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +      +    + N+   L  +S+        IK             R          
Sbjct: 266 HVICNVDDMQIKGSHNIENALAALSLAFLAGGDTIKMAEALKAFAPVEHRIEPVKTIDGV 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T  ++S   NP +   AI+    I                  G+   +   +   +++  
Sbjct: 326 TYYNDSKATNPEAANKAIATFPHIILIAG-------------GDDKNTPLDEFYALVNER 372

Query: 400 NISHVWLSGFHVLALKDAL-----PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
            + ++ L G      K+       P         +M     +         VV++    +
Sbjct: 373 -VDNLILVGDATKRFKEEALKHNYPEDKIYEAGYSMQEAVNYAHKIAKAPQVVLLSPACA 431

Query: 452 S---------NSCGFYRLINLLL 465
           S             F RL+N L 
Sbjct: 432 SFDMYEGYEARGRDFKRLVNELK 454


>gi|312126685|ref|YP_003991559.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776704|gb|ADQ06190.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 455

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 69/365 (18%), Positives = 116/365 (31%), Gaps = 34/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMRNFKN-----VIAIAGTHGKTTTTSMIGYILKKA---NYNPTILVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    D+ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKDYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G +  N DD   + + +K H   +           AD           +  +
Sbjct: 199 FAQKIPTSGFLVANCDDKNVKDIISKFHTQVVCISTKEKADIFADNISCNDGYY--EFDV 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +  +  G+H   N L    + S L  +  T  +ALS F     R      
Sbjct: 257 KNNNNEILAHIKLNIPGFHNVYNALAAFAVASKLRVESLTIEQALSEFCGASRRL----E 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGE 383
            + +     + + Y  +P  +KA ++ L +I          PH   R   +L +  E  +
Sbjct: 313 KVGEFNGIYLYDDYAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLK 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
           L+    +         NI      G     L   L    I   Y    D +  ++     
Sbjct: 373 LADKVIVTDVYAAREKNI-----FGITSEKLYLKLKEIGIDCEYISNFDDIACYVVKEAK 427

Query: 443 DGDVV 447
            GD++
Sbjct: 428 KGDII 432


>gi|288937140|ref|YP_003441199.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|290512563|ref|ZP_06551929.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
 gi|288891849|gb|ADC60167.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Klebsiella
           variicola At-22]
 gi|289774904|gb|EFD82906.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Klebsiella sp.
           1_1_55]
          Length = 438

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 73/376 (19%), Positives = 129/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDTDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +                      SFG     D       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVR--------GADDRCISFG----VDVGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    +  L+     
Sbjct: 258 NVKEMPLTGQHNYSNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLQL-----DGTLYLLLG-----GDGKSADFTPLKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELAELRPDV--AVQTETMEQAMRQIAPLVKAGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDMFARLAKEL 437


>gi|303230738|ref|ZP_07317485.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514498|gb|EFL56493.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 460

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 134/418 (32%), Gaps = 49/418 (11%)

Query: 48  GPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH  D++     +G   VV +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L   +     I          L  +    
Sbjct: 105 TNG---------IAVAGAHGKTSTTSMIGQILVEGQMEPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E   S           +RP + VIT I   H+ ++  +E + +A  +  E L 
Sbjct: 153 KGEYSVVEADES-----DGSFLKLRPKMIVITNIEDDHMDHYKTMENLLNAFCQFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  D+     + +K      +   ++G   + D+  +           +V  +G
Sbjct: 208 VDGKAVVCGDNDNIRYVMSKV----ERQFITYGLEDSNDYVAKNIHYEDSSLVYDVVHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++  V   +  +      +   IV+     V       ++      + +        G 
Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMK-------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDEFATAFTSADEIY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +       +  SG     + + +      HV+Y E ++ L   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPI--SGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKVVRPNDLV 436


>gi|332358296|gb|EGJ36122.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Streptococcus sanguinis SK355]
          Length = 400

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/425 (15%), Positives = 130/425 (30%), Gaps = 65/425 (15%)

Query: 82  SIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
            IPV  V+DV  A++ LA+        K  ++A TG+ GKTTT       LS   +    
Sbjct: 2   GIPVLLVNDVKQAMSLLAMEFYDHPEKKLKLLAFTGTKGKTTTAYFAYQILSQSHRPALL 61

Query: 140 IGSYNNHIG----------------VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
                   G                + +    +  D    I E+  S    ++   + + 
Sbjct: 62  STMNTTLDGETFFKSTLTTPESLDLIKMMAQALSNDRTHLIMEV--SSQAYLKKRVYGLT 119

Query: 184 PHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             + V   I+P H+        E+    K  + +       + +N     F+++K +  +
Sbjct: 120 FDVGVFLNISPDHIGPIEHPTFEDYFYNKRLLMDNSR---AVIVNSGMDHFQIVKEQVAS 176

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      +   +   D Q   ++   + +                             + 
Sbjct: 177 MEHDFYGADSSNTITDSQAFSFEATGKLAGHYDIQLIGRFNQE-------------NAVA 223

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                     +              G+        G    +D ++N    S     ++LS
Sbjct: 224 AALACLRLGASLEDIKKGIAATRVPGRMEVLTQKNGAKVFVDYAHNGVSLS-----NLLS 278

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
            +  H +G+ I +LG     GE  +    D   +L+ +    V L+         LA+ +
Sbjct: 279 VVQEHQKGKIILLLGATGNKGESRRK---DFGLLLNQHPELTVILTADDPNYEDPLAIAE 335

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSL-VDGDVVVVKSSNSCGFYRLIN----------L 463
            +    S  V      +       S    +G+ V++        Y+++            
Sbjct: 336 EIASYISYPVEKIADREEAIKKALSLTEREGEAVILAG-KGADAYQIVEGEKVPYPGDYA 394

Query: 464 LLEEF 468
           L E++
Sbjct: 395 LAEKY 399


>gi|227497876|ref|ZP_03928059.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
 gi|226832708|gb|EEH65091.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
           [Actinomyces urogenitalis DSM 15434]
          Length = 522

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 23  PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS 82
           P+ +++ +  D+R I P      +KG  +   D++L A ++G    V   +  +     +
Sbjct: 50  PELWLSSVVYDTRMITPGALLV-VKG-RFK-EDYLLPAQEQGMVAYVAEREYSSL---TT 103

Query: 83  IPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGKTTTKEMLTIALSS 132
            P   V D L A++ LA         + TI+ ITG+ GKTTT  ++   LS 
Sbjct: 104 CPGLIVTDALEAMSLLAAELYGHPERELTIVGITGTKGKTTTAHLVHAVLSQ 155


>gi|91786971|ref|YP_547923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
 gi|118595672|sp|Q12EL7|MURD_POLSJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91696196|gb|ABE43025.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas sp.
           JS666]
          Length = 587

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 98/363 (26%), Gaps = 26/363 (7%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A   R      ++AITG+ GKTT   ++   +    KT A  G+    + +    A +  
Sbjct: 202 AAGYR----PVVLAITGTNGKTTVTSLVGQLVQRAGKTVAVAGNIGPTL-LDTLSAHLDA 256

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI----ASAKAEIF 214
           D    ++ L +S             P  AV+  +   HL     ++      A       
Sbjct: 257 DTLPQVWVLELSSFQLAD--AQDFEPTAAVVLNVTQDHLDWHGDMDAYVAAKARIFGRST 314

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L       +         ++ +   +   + +  G+ +       +            
Sbjct: 315 FMLLNRDDPRVMEMLPTPVKVRLRPPQVRPHSTFGAGEPQRPGDYGIETVNGMAWLVRAA 374

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q            +  H+ + M +    +       +                       
Sbjct: 375 QADETIKRRKGEEVELHIQRLMPLDALRIRGRHNATNALAALGLAVAAGCSLAPMLHGLR 434

Query: 335 NQGFFTLIDESYN--------ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                    ES           +        +  +      E + + +LG     GE   
Sbjct: 435 EYRGEPHRVESIAVVNDVEYFDDSKGTNVGATAAALAGLGAERKLVVILG-----GEGKG 489

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGD 445
                LAE +S ++   V L G     ++ AL  S      + +M        +    GD
Sbjct: 490 QDFSPLAEPVS-HHARAVVLIGKDAPLIRSALQASQVALLDAASMQEAVSLAAAQAHTGD 548

Query: 446 VVV 448
            V+
Sbjct: 549 AVL 551


>gi|228474999|ref|ZP_04059727.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|314936655|ref|ZP_07844002.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
 gi|228270984|gb|EEK12372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis SK119]
 gi|313655274|gb|EFS19019.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Staphylococcus
           hominis subsp. hominis C80]
          Length = 448

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 97/323 (30%), Gaps = 48/323 (14%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ I EL    L  I       RPHIA+IT I  AHL     +E   +AK  I++   +
Sbjct: 160 DEYLITELSSFQLLGIEHY----RPHIAIITNIYSAHLDYHESLENYQNAKRRIYKNQTE 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  NY       L    +       +S  +  +  +    +   +  + + +     
Sbjct: 216 DDYLICNYHQ---RHLIETENLKAKTLYFSTQQEVDGIYIKDNYIVYNNVNLINIDDLVL 272

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E     I   +   +L  + I +I+ +    +           G   R +        
Sbjct: 273 PGEHNLENILAAVLAAILAGVPIKAIVDSLTTFS-----------GIEHRLQYIGTNRTN 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A++   Q      G            G    +   +L   +   
Sbjct: 322 KYYNDSKATNTLATQFALNSFKQPIIWLCG------------GLDRGNGFDELIPYMK-- 367

Query: 400 NISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           ++  + + G            +   V  +  ++     +Q  +   DVV++    +S   
Sbjct: 368 HVRVMVVFGETQDKFAKLGNSQGKEVIKAVDIEDAVKKVQDVIEPNDVVLLSPACASWDQ 427

Query: 453 ------NSCGFYRLINLLLEEFP 469
                       R I       P
Sbjct: 428 YKTFEERG---ERFIESFRAYLP 447


>gi|260899193|ref|ZP_05907588.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
 gi|308107131|gb|EFO44671.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Vibrio
           parahaemolyticus AQ4037]
          Length = 437

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 126/343 (36%), Gaps = 40/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +   T         +IGVP     +  DVD  + E
Sbjct: 107 NKPVVAITGSNGKSTVTDLTGVMAKAAGLTV----GVGGNIGVPALEL-LEQDVDLYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +  +AK  IF+           
Sbjct: 162 LSSFQL----ETTLSLKLKAAAFLNLSEDHMDRYEGMADYRAAKLRIFDH---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            + +       +++      + +FG     D Q    +    ++W+    Q         
Sbjct: 208 AELAVVNRDDQETYPEVEMPVVTFGS----DEQAYGLEVDGSRTWLLDHGQRVIASDELK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ L ++     D   A+ AL  +     R    +   +      +++S 
Sbjct: 264 LVGKHNLANALVVLALLKAAGVDYHNALNALKNYTGLTHRC---QVVADNRGVKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L        G+   ++G + +  + +      L  + +  N+  +  
Sbjct: 321 ATNIASTMAALSGL-----ESTGKLYLLVGGVGKGADFTP-----LKPIFATLNL-QLCC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G       D +P         TM+ +   I S L  GD+V++
Sbjct: 370 FGLDGD---DFMPLHESAIRFNTMEDVIQQISSQLKSGDMVML 409


>gi|220932600|ref|YP_002509508.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Halothermothrix orenii H 168]
 gi|219993910|gb|ACL70513.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Halothermothrix orenii H 168]
          Length = 348

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           +T  +L   + G  +G  P   + G+S   +SR   P    FA    +     ++  A Q
Sbjct: 11  YTARELAHLVGGELVG-DPDLVIKGVSGVGESR---PDTVTFA---ENS---TYLDKAEQ 60

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA------ARLRSKAT-IIAITG 115
             AGLV+V  ++  S  +    +  V +   A  ++A         R     T +I+ T 
Sbjct: 61  SRAGLVIVPEEIEESSKN----IIRVKNPRLAFARIASHFAPDMLYRPGIDETAVISSTA 116

Query: 116 SVGKTTTKE 124
            +G+  +  
Sbjct: 117 CIGEDVSIH 125


>gi|74316135|ref|YP_313875.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
 gi|118595702|sp|Q3SMH5|MURD_THIDA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|74055630|gb|AAZ96070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 474

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/423 (16%), Positives = 125/423 (29%), Gaps = 58/423 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITG 115
           +  AV +G   V            L      V +    AL         ++   +IAITG
Sbjct: 89  VAQAVAQGVEAV--------GDVELFARALAVLNAQRAALPA------PQAAMRVIAITG 134

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNH--IGVPLTLARMPVDVDFGIFELGMSHLG 173
           S GK+T   M          T    G+        +              + EL    L 
Sbjct: 135 SNGKSTVTAMCGDMCRMAGLTVCVAGNIGLPVLDALHEIEQGAAPLPQVWVLELSSFQL- 193

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T  +    A +  ++  H+  +  +   A+AKA IF G           +     
Sbjct: 194 ---ETTSSLDATAAAVLNLSEDHMDRYPDMAAYAAAKARIFSGNG-----VQVLNRDDPR 245

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L     A+  + + SFG     D           +  + +         V    G H A
Sbjct: 246 TLA---MAIPGRHVVSFGL----DRCPTDENFGLCEDELCLGGDMLMPLSVLAVPGLHNA 298

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  L +   L   ++  ++ L  F     R        +    T  D+S   N  + 
Sbjct: 299 ANALAALALTRALDLPIEALLRGLMHFKGLPHRV---EKVADIDGVTWYDDSKGTNVGA- 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                  + +   G  + + +LG   +  +          +     N   V L G   +A
Sbjct: 355 -----TEAALYGMGRRKAVVILGGDGKGQDFGP------LKAAVAANARAVVLIGRDAVA 403

Query: 414 LKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV---KSSNSC------GFYRLINL 463
           ++ A+  S    Y ++T+             GD V++    +S              ++ 
Sbjct: 404 IEAAIEDSGVASYRADTLPDAVEQAARLAEPGDAVLLSPACASFDMFRNYVHRAEVFVDA 463

Query: 464 LLE 466
           + +
Sbjct: 464 VKK 466


>gi|71909553|ref|YP_287140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Dechloromonas aromatica RCB]
 gi|71849174|gb|AAZ48670.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Dechloromonas aromatica RCB]
          Length = 448

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/403 (13%), Positives = 112/403 (27%), Gaps = 41/403 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G    ++   +   +  +S P +  ++VL                 ++ + G+
Sbjct: 67  IGNAISRGNP--LLEAILDKGLPYVSGPQWLAENVLQ-------------GRWVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L          G     + +   ++    D  F + E          
Sbjct: 112 HGKTTTASMLAWILEDANMA---PGFLIGGVPLNFGVSARLGDTPFFVIEADEYDTAFCD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    P   V+  +   H   FS +  I +    +   L ++G I  N  ++  + 
Sbjct: 169 KRSKFVHYHPRTVVLNNLEFDHADIFSDLAAIETQFHHLVRTLPQSGLIVSNAAEASLDR 228

Query: 235 LKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
           + A+     ++      G     D    +      +  +       S E         + 
Sbjct: 229 VLARGCWTPVERFNDPAGYRVTGDDARGELVLHGPEGVIGRTRWNLSGEHNRANACAALL 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               + + +          A+        +       R       F     +     A +
Sbjct: 289 AARHVGVSLAH-----GLDALSRFVNVKRRMEVRGEVRGVTVYDDFAHHPTAIATTVAGL 343

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GFHVL 412
           +  +     ++          LG M      S               +   +   G    
Sbjct: 344 RRKVGNARILAVLEPRSNTMKLGTMKSQLPDSLRE------------VDAAFCYAGNLGW 391

Query: 413 ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             ++AL          E +D L   I  +   GD ++V  SN 
Sbjct: 392 DAREALAPMGERAIVEENLDRLVDQIVIAAQPGDHILV-MSNG 433


>gi|24375298|ref|NP_719341.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
 gi|24350105|gb|AAN56785.1|AE015814_5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shewanella oneidensis MR-1]
          Length = 465

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 134/415 (32%), Gaps = 37/415 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   I   S P F VD +L              +  ++A++G+
Sbjct: 70  IGNAMSRGNPC--VEAVLNLGIPYTSGPQFLVDHIL-------------PERWVLAVSGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  ML      ++      G     +     ++    +  F + E     S   +
Sbjct: 115 HGKTSTSSMLA---WILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEADEYDSAFFD 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P   VI  +   H   F+ +  I          +   G +    D    + 
Sbjct: 172 KRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQ 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                     +T +S   +K    +           +           +    IG H  +
Sbjct: 232 TIDMGCWSEQETYHSSEVTKGWHAKALSDDCHE---FEVFFDGQSQGVLDWALIGQHNIE 288

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +M +     +      AI AL+ F P + R +          +    + +  +P ++ 
Sbjct: 289 NAVMAIAAARHVGVAPSAAIDALARFVPPKRRLELLDTVNGVSVY----DDFAHHPTAI- 343

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---LSGFHV 411
              + +  +       +I ++ +       S      LA  +   + + ++      +++
Sbjct: 344 --ATTIKGMRAKVGQTKITIVLEPRSNTMKSGVHKDTLAHSMLQADEAFLYQADTIDWNM 401

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
               +A    I V     +D +   + +S   GD +VV  SN  GF  L   LL 
Sbjct: 402 KEAMEAA--VIPVTVLHQIDDVVAKVAASAKPGDTIVV-MSNG-GFGGLHKKLLA 452


>gi|329297059|ref|ZP_08254395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Plautia stali symbiont]
          Length = 451

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 66/367 (17%), Positives = 113/367 (30%), Gaps = 32/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       I       G+P             F + E 
Sbjct: 105 VLAVAGTHGKTTTAGMAARILEACGLEPGFIIG-----GLPGNFDVSAKLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  +  I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
              D   + + A          +S  +S   + + +  K   + S  E      K  EV 
Sbjct: 220 PEHDHNIKQVMA-------MGCWSEQESVGDNGRWQANKLVPDASRWEAWLDGEKVAEVN 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +      A +AL+            R  L         +
Sbjct: 273 WALVGEHNMHNGLMAIAAARHVGVKPCDAGEALN-------SFINGRRRLELRGEVNAIK 325

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISH 403
            Y+       A ++ L+ +     G    +   + E    +    +  +E+         
Sbjct: 326 VYDDFAHHPTAILATLAALRSKVGGTARIL--AVLEPRSNTMKMGVSKSELAPSLGRADE 383

Query: 404 VWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V+L   H     + D     I   H+S  +D L   +  +   GD ++V  SN  GF  +
Sbjct: 384 VFLFQPHHIPWQVADVAEACIQPAHWSADIDTLVEMVAKAAQPGDSILV-MSNG-GFGGI 441

Query: 461 INLLLEE 467
              LLE 
Sbjct: 442 HQKLLER 448


>gi|145297486|ref|YP_001140327.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|172044438|sp|A4SI57|MURC_AERS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|142850258|gb|ABO88579.1| UDP-N-acetylmuramate--alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 484

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/402 (18%), Positives = 147/402 (36%), Gaps = 45/402 (11%)

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A+++       +   + +   L IPV     V  A   LA   R R     IAI G+ GK
Sbjct: 87  AIKQ-------DNPELLAARELRIPV-----VRRA-EMLAELMRFRHG---IAIAGTHGK 130

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++    +   +    +     +               + I E   S    +    
Sbjct: 131 TTTTSLVASIYAEADRDPTFVIGGLLNS---AGTNARLGSSRYLIAEADESDASFLH--- 184

Query: 180 HLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             ++P ++++T I   H+  +     ++ +   +    L   G   +  DD     +  +
Sbjct: 185 --LQPMVSIVTNIEADHMETYGGDFSKLKATFIDFLHNLPFYGLAVVCVDDPVIRGMLPE 242

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                 +   ++G S +AD Q+  + Q S +S   V+ +      V  +  G H A N  
Sbjct: 243 I----ARPTITYGLSDDADVQVLDFVQTSNRSCFRVRRKDAGELAVTLNLPGIHNALNAA 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             + + +      D  I AL+ F     R ++Y          ++ + Y  +P+ +K  I
Sbjct: 299 AAIAVATEDGIGDDAIICALAKFEGVGRRFQQYGEFETGRGKAMLVDDYGHHPSEVKVTI 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGFHVLAL 414
           +      P        V+         ++  + D ++VLS  ++     V+ +G   +  
Sbjct: 359 NAARTGWPDK----RLVMVFQPHRYTRTRDLYEDFSDVLSKVDVLVMLEVYAAGEEPIPG 414

Query: 415 KD--ALPRSIHVH------YSETMDGLFLFIQSSLVDGDVVV 448
            D  AL RSI         ++ T D +   +   + +GD+V+
Sbjct: 415 ADGRALCRSIRSRGSLEPIFAATPDDVPAILADLIGEGDLVL 456


>gi|90020496|ref|YP_526323.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
 gi|109892735|sp|Q21MG8|MURC_SACD2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|89950096|gb|ABD80111.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharophagus degradans
           2-40]
          Length = 474

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/419 (17%), Positives = 141/419 (33%), Gaps = 52/419 (12%)

Query: 54  HDFILHAVQK--GAGLVV----VNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLR 105
           H FI H      GA +VV    V +     + +    +  V     A  L +L       
Sbjct: 62  HVFIGHHATNVDGASVVVNSSAVESGNPELMEAREKRIPIV---RRAEMLGELMRYRHG- 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  +++  L++ KK    I     +            +  + + 
Sbjct: 118 -----IAVAGTHGKTTTTSLISSILAAGKKDPTFIIGGLLNS---AGSNAGLGESRYLVA 169

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIF 224
           E   S    +      ++P ++V+T I   H+  +     ++     +    L   G   
Sbjct: 170 EADESDASFLH-----LQPMVSVVTNIDADHMDTYEGDFSKLKQTFIDFLHNLPFYGLAV 224

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +  DD     L        +    ++G ++++D++    +Q   +   +V        + 
Sbjct: 225 VCGDDPIVTELIPAISRSVV----TYGFNEDSDYRAFDVRQDGSKLRFKVARPEGLATLE 280

Query: 285 HH--GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTL 341
                 G H   N    + + S    D D     L+ F     R + Y    +  G   +
Sbjct: 281 LFLNMPGKHNVLNATAAVAVASEEKVDDDAIQNGLANFMGVGRRFEIYGEFEVGAGPTAM 340

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  + A I+ +    P        V+         ++  + D  EVLS   +
Sbjct: 341 LVDDYGHHPREVAATIAAVRDGWPDR----RLVMVYQPHRYSRTRDLYEDFVEVLST--V 394

Query: 402 SHVWLS-----------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
             + L            G     L   +     V   + E ++G+   I+  +  GD++
Sbjct: 395 DQLVLLEVYSAGEDPIPGADSRHLSRTIRTRGVVDPIFVEGVEGVPAVIKDIVQPGDII 453


>gi|311280932|ref|YP_003943163.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
 gi|308750127|gb|ADO49879.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Enterobacter
           cloacae SCF1]
          Length = 438

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 132/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +             +IG+P  +  + V  +
Sbjct: 99  FCREAQAPVVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDVSRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATILNVTEDHMDRYPLGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + GI            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADERCISFGI------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFGGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG     G+   +    L   L+  N
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLWLLLG-----GDGKSADFAPLKRYLTGDN 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P    +   ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGDELAALRPEVSTLT--ETMEQAMRLIAPQVKPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDIFTRLAKEL 437


>gi|304392255|ref|ZP_07374197.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
 gi|303296484|gb|EFL90842.1| UDP-N-acetylmuramate--alanine ligase [Ahrensia sp. R2A130]
          Length = 472

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 100/315 (31%), Gaps = 33/315 (10%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D  + + E   S           +   +AV+T I P HL ++   +    A     E 
Sbjct: 153 MGDGAWMVAEADES-----DGSFLKLPATVAVVTNIDPEHLDHYKTFDRAKKAFRRFIEN 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           L   G   +  D    + L A+        + ++G +  AD + R  +    ++  +V +
Sbjct: 208 LPFYGFGVMCIDHPEVQALVARVEDR---RLVTYGNNPQADVRFRNVRAQGAKNIFDVVI 264

Query: 277 QGKSMEV-------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           Q +                G H   N    + +   L          L+ F     R   
Sbjct: 265 QDRRSPDAIELNDLELPMPGIHNVSNATAAIAVAWQLGVGAQEIRDGLAAFKGVRRRFTH 324

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QS 387
                       + + Y  +P  + A +         G+G    V+  + +    +    
Sbjct: 325 TGSWNG----VEVFDDYAHHPVEISAVLKAARSAVRSGDGTGGRVIA-IKQPHRYTRLDD 379

Query: 388 FHIDLAEVLSLYN---ISHVWLSGF------HVLALKDALPRSIH--VHYSETMDGLFLF 436
              + A   +  +   ++ V+ +G       +  +L +A+  S H  V   E  + +   
Sbjct: 380 LFEEFAACFNDADTVYVAPVYAAGEQPIDNRNAASLAEAIRSSGHRDVQAIEGREAIADL 439

Query: 437 IQSSLVDGDVVVVKS 451
           I++    GD V+   
Sbjct: 440 IRAKAKPGDYVLFLG 454


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/409 (16%), Positives = 128/409 (31%), Gaps = 48/409 (11%)

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG------ALNKLAVAARLRSKA------- 108
           + GA L +      AS       +    D+        A  +L      RS         
Sbjct: 44  EAGATLFI---GHSASYIKPGTTIVYTSDIKESNPEFIAAQQLKCPMLHRSDLLALLMQN 100

Query: 109 -TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +A+TG+ GKTTT  +L+  L    +           +   L         D+ + E 
Sbjct: 101 RKTLAVTGTHGKTTTSSLLSWVLHHAGQD---PSFAVGGVIAQLNANAQHGKGDYFVAEA 157

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S    +R+      P+  +IT I   H++ +   E +  A  +  + +E    +F   
Sbjct: 158 DESDGSFLRYT-----PYGGIITNIDLDHMNYYQTEEALVGAFHQFAKKVESADHLFWCG 212

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DDS  + L  +  + G  +       +         ++  + S+       +  ++    
Sbjct: 213 DDSRLQKLNIEGVSYGFNSDCQLHILQFT-------QKGWKTSFDITFRGLQYRQIEIAQ 265

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG +   N     G+   +  +     KALS F     R         Q    L  + Y 
Sbjct: 266 IGSYNVLNSAAVFGLALQMGIEEHAIRKALSTFPGVGRRCTM----RGQKQEILFIDDYA 321

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVW 405
            +P  +   +     I      +R+ VL               +  + E   +  ++ ++
Sbjct: 322 HHPNEIAVTLRA---IRDAIGEKRLIVLFQPHRYSRTKDCLGTYRGIFESADMVYVTDIY 378

Query: 406 LSGFH------VLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVV 447
            +G           + D L +      Y      +   +  +L   DVV
Sbjct: 379 SAGEQEIPGVTTQKVFDELSQDRSPDFYYSPRKEIVEKVYQTLFPHDVV 427


>gi|121998869|ref|YP_001003656.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
 gi|189028995|sp|A1WYU2|MURC_HALHL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|121590274|gb|ABM62854.1| UDP-N-acetylmuramate--L-alanine ligase [Halorhodospira halophila
           SL1]
          Length = 486

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/401 (18%), Positives = 137/401 (34%), Gaps = 44/401 (10%)

Query: 67  LVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV+T +      +       IPV         +  LA   R R     +A+ G+ GKT
Sbjct: 87  AVVVSTAVTEDNPEVQAARQQRIPVV----PRAEM--LAELMRFRHG---VAVAGTHGKT 137

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +L   L+  +     +                     + + E   S    +     
Sbjct: 138 TTTSLLASCLAEGELDPTFVIGGRLISAGAHARLGAGP---YLVAEADESDASFLH---- 190

Query: 181 LVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            ++P +A +T +   HL  +    E +     E    L   G   L  DD     L+ + 
Sbjct: 191 -LKPMMAAVTNVDADHLGTYGGDFEALRRTFIEFLHHLPFYGLAVLCIDDPEVRRLRGEI 249

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIGYHMAQNMLM 298
               +    ++G S++AD ++   +    ++   ++   G +  V     G H   N   
Sbjct: 250 GRPVL----TYGFSEDADVRVSGMEADGHRTRFRIEEGDGAAFAVELSLPGRHNVLNAAA 305

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L  DV    +ALS F     R + Y           + + Y  +P  ++A + 
Sbjct: 306 AIALARELGVDVAAIQRALSSFQGIGRRFQVYPDIPLAEGAAALVDDYAHHPRELEATLQ 365

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------ 409
                 P        V+         ++    D A VLS  +   ++ V+ +G       
Sbjct: 366 AARAAWPER----RLVVVFQPHRYSRTRELFDDFARVLSGTDALVLTEVYAAGEARLPGA 421

Query: 410 HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
              AL  A+         ++E++D +   +   L D DVV+
Sbjct: 422 DGRALASAVRDRGGAQPIFAESLDEVPGLLAGLLRDDDVVL 462


>gi|148265984|ref|YP_001232690.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
 gi|189028991|sp|A5G8J9|MURC_GEOUR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146399484|gb|ABQ28117.1| UDP-N-acetylmuramate--L-alanine ligase [Geobacter uraniireducens
           Rf4]
          Length = 458

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 129/418 (30%), Gaps = 56/418 (13%)

Query: 53  GHDFILHAVQKGA---GLVVVNTDMVASIGSLS-----IPVFGVDDVLGALNKLAVAARL 104
           G  FI HA +  A    +V+ +     +   +      IPV         +  LA   R+
Sbjct: 51  GEIFIGHARENVANVDVVVISSAVHDDNPEVVEAMERLIPVI----PRAEM--LAELMRM 104

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     IAI G+ GKTTT  M+   L+        +     +    +          F +
Sbjct: 105 KYG---IAIAGTHGKTTTTSMVATILAKGGIDPTIVIGGRLNS---IGTNARLGQGQFLV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S           + P IAV+T I   HL  +  I+EI     +    +   G   
Sbjct: 159 AEADES-----DGSFLKLSPTIAVVTNIDADHLDFYKDIDEIKDTFVQFINKVPFYGLAV 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEV 283
           L  D+     +             ++G S  ADF+    +      S++         E+
Sbjct: 214 LCLDNGNIADIIPLVKK----RFNTYGLSTQADFRATDVRHTGFTTSFVAHYKGTLLGEI 269

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L T+ +   L             F     R +       +    ++ 
Sbjct: 270 TFSMPGAHNVLNALATIAVAMELNIPFAEIQAGFKAFGGVGRRFQ----VKGEVRDIMVV 325

Query: 344 ESYNANPASMKAAISVLSQISPHGEGR-RIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           + Y  +P  +       + ++    G  R  V+         ++    +  +    Y+  
Sbjct: 326 DDYGHHPTEI------RATLAAAKGGWDRRLVVAFQPHRYSRTKELFEEFVKAF--YDAD 377

Query: 403 HVWLS-----------GFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVV 447
            + L+           G    +L   + R     V Y    + +   +   +  GD+V
Sbjct: 378 ILILTDIYPAGEKPIEGITAESLAARIKRHGQKDVTYIADRNAVCDHLLGIVKPGDIV 435


>gi|303246305|ref|ZP_07332585.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
 gi|302492368|gb|EFL52240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           fructosovorans JJ]
          Length = 441

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 111/354 (31%), Gaps = 58/354 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA          I+A+TGS GKTTT  +++  L +  +          +IG PL+   +
Sbjct: 107 ELASWF---VTEPIVAVTGSNGKTTTVMLVSHLLEAAGRKVFTG----GNIGTPLSEYVL 159

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             D  D  + E+    L     L    RP +AV+   +P HL   + +EE  SAK     
Sbjct: 160 AGDPADVVVLEVSSFQL----QLVKSFRPKVAVLLNFSPNHLDWHADLEEYLSAKLN--- 212

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              +  +     +                        +S+    
Sbjct: 213 --------IFAAQRPGDTAILPRDMRDALA----------------------GRSFTRAD 242

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +                A N                T   A   F        R +    
Sbjct: 243 VTWFEPSGRFVCPRLAGAHNRQNMEAAFLATQPFGVTEEIAKVAFERFAPAPHRLQIIGE 302

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +G    +D+S     A+M+AA+                + G + + G+L+      L+ +
Sbjct: 303 KGGVLFVDDSKATTVAAMEAALRSFD-------RPVRLLCGGVFKGGDLAA-----LSPL 350

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    ++ V L G      + A    + + +  T+      + +    GDVV++
Sbjct: 351 LKER-VAAVGLFGAGREVFEAAWAGQVPLFHEPTLKPAVTRLFAEARPGDVVLL 403


>gi|284030818|ref|YP_003380749.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
 gi|283810111|gb|ADB31950.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Kribbella flavida
           DSM 17836]
          Length = 479

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 119/363 (32%), Gaps = 33/363 (9%)

Query: 97  KLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R  + A   + +TG+ GKTTT +MLT  L++             ++G+PL  A 
Sbjct: 110 ELAWRLRDPANAAPWLCVTGTNGKTTTVQMLTAMLTAAGHR----AVAAGNVGLPLLEAV 165

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           M  +  D    EL    L     ++       A +  +AP H+     +E  A+ K  IF
Sbjct: 166 MDPEPYDVIAVELSSYQLHFTHSMSAHS----AAVLNLAPDHVDWHGSLEAYAADKGRIF 221

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E  +      +    +   + +A          ++ G    +   L   +   +++++E 
Sbjct: 222 ENCQVACVYNVADAATEKLVEQADVVEGCRAIGFTLGTPGLSMLGLVD-EYLVDRAFVEQ 280

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +            I      N+   L   ++  A    A               R     
Sbjct: 281 RATSALELATLADITPPAPHNVANALAAAALARAFGVPATAVRDGLRGFRPDAHRIAHVA 340

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +D+S   NP + +A++     +     G+      D  E+             
Sbjct: 341 EVAAVNYVDDSKATNPHAAQASLLAYEHVVWIAGGQAKGATFD--EL------------V 386

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSET--MDGLFLFIQSSLVDGDV 446
             +   +  V L G     +  AL R         V  ++T  M+ +          GD 
Sbjct: 387 TAARSRLRGVVLLGQDKAVIAQALARHAPDVPVITVEATDTGAMETVVGEAAKLAQVGDT 446

Query: 447 VVV 449
           V++
Sbjct: 447 VLL 449


>gi|262404717|ref|ZP_06081272.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
 gi|262349749|gb|EEY98887.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC586]
          Length = 440

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      +    +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWHVDK---PVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF  
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E       +           +    G++    F              Q   + ++    
Sbjct: 208 AETAVVNADDTQTFPDRAAHLQVVTFGVEHAAQFS-----------VAQHQGREYLFAHD 256

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +          +G H   N+L  L ++     +   A+ AL  +     R    +  ++ 
Sbjct: 257 EAVMACDELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRC---QVVVDN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDGDKF---MPLHSSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|188589349|ref|YP_001919591.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum E3
           str. Alaska E43]
 gi|229486481|sp|B2UXS3|MURC_CLOBA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|188499630|gb|ACD52766.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 460

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 116/364 (31%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +    +       +AI+G+ GKTT   ML+            +      I     
Sbjct: 101 EFLGNIMKGHKYN-----VAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNF 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D+ I E       E +       P++ VI  I   HL  +  I+EI     +
Sbjct: 156 RIG---SSDYFITEAC-----EYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G +     DS  + + +K+    +   +   ++ +   +   + +    S+ 
Sbjct: 208 FADLIPNDGYLIGYIGDSRVKEILSKAKCNTLSYGF---ENADVTARNITFNEKGCASFD 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +   K  ++     G H   N L ++ +  I   + D  I  LS       R +    
Sbjct: 265 VYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSECKGAHKRFEYKGE 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI--------AVLGDMCEMGEL 384
                    + + Y  +P  +KA ++   +I  +                L D       
Sbjct: 325 VNG----VTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPHTYTRTKTLFDEFTDAFF 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                + +    +    + +  S    +AL+    + +      + D    ++++S    
Sbjct: 381 DADEVVLMDIYAAREKDTGLVSSNDLGVALR---AKGVKCTNVHSHDEALEYLKNSAKPN 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|262195225|ref|YP_003266434.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
 gi|262078572|gb|ACY14541.1| UDP-N-acetylmuramate/alanine ligase [Haliangium ochraceum DSM
           14365]
          Length = 472

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 131/410 (31%), Gaps = 38/410 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             V +  +  IPV         +  L    R+++     A+ GS GKTTT  M+   L +
Sbjct: 80  PEVEAARARMIPVI----PRAEM--LGELMRMKTGL---AVAGSHGKTTTTTMIASVLMA 130

Query: 133 IKKTYACIGSYNNHI-GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                  +     +  G+           ++ + E   S           + P  AV+T 
Sbjct: 131 AGMDPTAVIGGRVNALGLANARWG---KSEYLVAEADES-----DGSFLTLAPTFAVVTN 182

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           + P HL ++  ++ +  A       L   G   +  D++  + +  +          ++G
Sbjct: 183 LDPEHLDHYGSVDNLHRAFINFLNRLPFYGLAAVCLDNAGVQAILPQIQK----RFVTYG 238

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            +  A ++ R  +     +      + +   E+     G H   N L  L I   L    
Sbjct: 239 MASQATYRARNIRPEGLVTRYVAWRRAEELGEIHLPMPGQHNVLNSLAVLAICDALDVPF 298

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   KAL  F   + R                        +++  A S           +
Sbjct: 299 EVTAKALQSFEGIQRRFTVRGEVAGITVVDDFGHHPAEVRSTLAGARSAFPSRRIIAAFQ 358

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------VLALKDALPRSIH- 423
                    +  E ++SF+           I+ V+ +G          AL  A+  S H 
Sbjct: 359 PHRYTRTRDQFQEFARSFYD-----ADKVIITDVFSAGEAPIEGATAEALAKAVSTSGHG 413

Query: 424 -VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAIQ 472
            V +      +   +   + +GD+V+   +         N L+E+  A +
Sbjct: 414 DVTHIARRADVAEHLSEIVREGDLVITLGAGDIQLS--CNELIEKLEATR 461


>gi|283850516|ref|ZP_06367804.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
 gi|283574087|gb|EFC22059.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           FW1012B]
          Length = 442

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 110/354 (31%), Gaps = 58/354 (16%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA      +   I+A+TGS GKTTT  +++  L +  +          +IG PL+   +
Sbjct: 107 ELASWF---TAEPIVAVTGSNGKTTTVMLISHLLEAAGRKVFTG----GNIGTPLSEYVL 159

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             D  D  + E+    L     L    RP + V+   +P HL   + ++           
Sbjct: 160 AGDPADVVVLEVSSFQL----QLVRTFRPRVGVLLNFSPNHLDWHADLD----------- 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                            E L AK +    +             +    +  S+   +   
Sbjct: 205 -----------------EYLDAKLNLFKAQRPGDLALVPEELRETLAGRTLSKGEVVWFA 247

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G+       G+                       T   A + F        R +    
Sbjct: 248 PSGRFHCPRLAGLHNRQNMEA-----AYLACQPFGVTEETAKAAFESFAPAPHRLQIIGE 302

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     +D+S     A+M+AA+                + G + + G+L+          
Sbjct: 303 KRGVLFVDDSKATTVAAMEAALKSFD-------RPVRLLCGGVWKGGDLAALL------P 349

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L    ++ V L G      + A    + + Y  T       + +  V GDV+++
Sbjct: 350 LLKGKVASVGLFGASREIFEAAWAGQVPLFYEPTQKAAVTRLFAEAVPGDVILL 403


>gi|262066316|ref|ZP_06025928.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291380011|gb|EFE87529.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 432

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 116/353 (32%), Gaps = 43/353 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT   ++  L+              +IG  L+   +       
Sbjct: 87  KNLKTKIIAITGTNGKSTTTAKISDLLNHAGYKACY----AGNIGRSLSEVLLHEKDLDF 142

Query: 164 IF-ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           +  EL    L  +       +P+I++I  + P H+  +   +E    K  I +  ++   
Sbjct: 143 VSLELSSFQLENVE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNISKNQDENQY 198

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              N DD   E    +  A  I    S  KSK A+  +   K    +             
Sbjct: 199 FIENIDDVEIEKRAKQIKAKRI----SVSKSKEANIYVANDKIYVGK----------DCI 244

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +      N+  TL +V+          K             R     N G    I
Sbjct: 245 IDVDKLSLKGIHNVENTLFMVATSEILNIDREKLKEFLMIATPLEHRTELFFNYGKVKFI 304

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  S K AI           G    V                 LAE++   NI 
Sbjct: 305 NDSKATNVDSTKFAIQANKDSILICGGYDKGV-------------DLAPLAEMIKE-NIK 350

Query: 403 HVWLSGFHVLALKDALPR----SIHVHYSETMD-GLFLFIQSSLVDGD-VVVV 449
            V+L G     ++  L +    +  +H  E ++  L    +    D D V+++
Sbjct: 351 EVYLIGVIADKIETELKKIGYEAGKIHKLENIENSLLDMKKRFTKDSDEVILL 403


>gi|251779235|ref|ZP_04822155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243083550|gb|EES49440.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 458

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 114/385 (29%), Gaps = 59/385 (15%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
                KA I  ITGS GKTTT  +++  L               +IG P           
Sbjct: 111 FVRYCKAKIYGITGSDGKTTTTTIISKMLQEEGYKTWVG----GNIGTPLFAQIEEIKAE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T  +   IAV T +AP HL     ++E   AK  IF   + T
Sbjct: 167 DRVVLELSSFQL-----MTMNLPMDIAVCTNLAPNHLDMHKDMQEYIDAKKNIFLYQDTT 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ +N ++      +A+  A G+   +S  +        +          +  +     
Sbjct: 222 NTLVVNRENEITYGFEAE--AKGVVREFSSKREVKEGAYYKDGILYLSGKEVCKKDNIVI 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   I +     ++   K    F+  E R              
Sbjct: 280 K--------GMHNVENYLAAFIATKDDVSIENMKKVAESFNGVEHRC---ELVREINGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +      G                   H+    + +   
Sbjct: 329 YYNDSIASSPTRTLAGLKAFDKKVILIAGGY---------------DKHLLFEPLANQGY 373

Query: 401 --ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
             I  + L G     +KD            I++    T++      Q     GD++ +  
Sbjct: 374 PYIKELILLGQTKEKIKDVFKDLEASKGIKINISEVSTLEEAVKKAQYLAKQGDIITLSP 433

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F  ++N L
Sbjct: 434 ACASFDMFPNFMIRGNKFKEIVNEL 458


>gi|157147488|ref|YP_001454807.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Citrobacter
           koseri ATCC BAA-895]
 gi|157084693|gb|ABV14371.1| hypothetical protein CKO_03287 [Citrobacter koseri ATCC BAA-895]
          Length = 438

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/376 (18%), Positives = 132/376 (35%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +    +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDAARE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  ++E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRVYENAKVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            +       +   ++W+ V+ +   
Sbjct: 210 VVNADDALTMPVRGADARCVSFGV------------NMGDYHLNRQQGETWLRVKGEKVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +         +++KAL+ F     R    + AL      
Sbjct: 258 NVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLAHRF---QLALEHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L     H +G    +LG   +  + S      L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFS-----SLTRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           +  ++  G     L  AL   I    +ETM+     +   L  GD+V++    +S     
Sbjct: 365 V-RLYCFGRDGAQLA-ALRPEI-AEQTETMEEAMRLLAPRLQPGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGDVFTRLAKEL 437


>gi|306822425|ref|ZP_07455803.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802467|ref|ZP_07696573.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
 gi|304553970|gb|EFM41879.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308220867|gb|EFO77173.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
          Length = 292

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 40/124 (32%), Gaps = 6/124 (4%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T   L                 V  ++ D  SI P   F    G   D    ++ 
Sbjct: 8   MNRRMTLGHLASQYGFDLDPSFASAVTVTSLADDIDSIRPGALFV--PGADVDVRQ-LVQ 64

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSV 117
           A Q GA   +V   M   I  L IP+   +     L KLA            + AI GS 
Sbjct: 65  AQQLGAYGAIVPHAMRGEIQDLQIPLIYAEPTAQQLGKLACDIAGAPSDVLAVFAIIGSD 124

Query: 118 GKTT 121
            ++ 
Sbjct: 125 RESV 128


>gi|255657475|ref|ZP_05402884.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-23m63]
 gi|296449070|ref|ZP_06890860.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296879893|ref|ZP_06903866.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
 gi|296262163|gb|EFH08968.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP08]
 gi|296429182|gb|EFH15056.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           NAP07]
          Length = 450

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 135/385 (35%), Gaps = 38/385 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L ++    +       IA++G+ GKT+T  ML+            +   N  +   +  
Sbjct: 93  FLGQIMREYKNS-----IAVSGTHGKTSTTSMLSTIFEYADLDPTILVGGNLSM---IGG 144

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + +  I E       E         P I+++  +   HL  FSGI+EI ++  + 
Sbjct: 145 NVKIGNSNHFITEAC-----EYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKF 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L   G   +N DD   + +            Y      +A  +   +       +  
Sbjct: 200 GKLLPPEGYFIINGDDENIDDIL--YDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIFRI 257

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   E      G H   N    +    +   D++T  K + ++     R +     
Sbjct: 258 EYQGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGYY 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISP---HGEGRRIAVLGDMCEMGELSQSFHI 390
            N     L+ + Y  +P  +KA ++   ++         +          +GE S++F+ 
Sbjct: 318 KNA----LVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLGEFSEAFYA 373

Query: 391 DLAEVLSLYNISHVWLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
                     I+ ++ +        H   L + L   ++   Y +  + +  +++ ++ D
Sbjct: 374 -----ADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKD 428

Query: 444 GDVVVVKSSNSCG-FYRLINLLLEE 467
            D+V + +    G  Y++ +LL+E+
Sbjct: 429 NDLV-ITA--GAGPIYKVADLLVEK 450


>gi|299133064|ref|ZP_07026259.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
 gi|298593201|gb|EFI53401.1| amino acid adenylation domain protein [Afipia sp. 1NLS2]
          Length = 1310

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 134/420 (31%), Gaps = 42/420 (10%)

Query: 47  KGPH-YDGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLA 99
           KG   + GH    H    GAG+VV +  +  S   L       IP+      LG L + +
Sbjct: 48  KGATVFHGH-HADHV--NGAGMVVYSDAIPFSNPELAEARLRQIPIAKRAQCLGLLLEHS 104

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
            A         +A++GS GK++T  M+   L +  +  + +            +      
Sbjct: 105 RA---------VAVSGSHGKSSTTTMIANILRASGQDVSHV--VGAPSECLDNIQGRCGA 153

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + E   +           + P IA+I  I   H+ ++  +E++  A  +    +  
Sbjct: 154 SDIFVAEACEAFQNLA-----PLSPDIALILNIDDDHIEHYGSVEKLHGAFRDFAGRIRN 208

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQG 278
            G + +N +D+    + A + A       +FG +   D            S   V     
Sbjct: 209 GGALIVNGEDARARDIAASAIAPVT----TFGFAAGFDVHAAHIAMDGGGSTFSVIAYGA 264

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +   +     G HM  N L  +     L        +    F     R + +        
Sbjct: 265 ELGTLRLKVPGRHMIGNALACVAACLALDVSFAGIQRGFEQFTGVSRRWQMHGEVHGVR- 323

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  ++A +     I+ H     IA    +          ++++ +    
Sbjct: 324 ---LIDDYAHHPTELRACLETARLIAAHSGSLCIAFQPQLYSRTRRLLGEYVEVLKGFDR 380

Query: 399 YNISHV------WLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +  +         G  V  L D L  +   V        L   I S    GD ++   
Sbjct: 381 IGLVEIDGAGEKNTFGVSVHHLADTLREAGKTVCAFPDAGELLQNISSLASTGDTLIFAG 440


>gi|298531034|ref|ZP_07018435.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509057|gb|EFI32962.1| UDP-N-acetylmuramate/alanine ligase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 453

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 125/389 (32%), Gaps = 44/389 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +    S  IPV         +  LA   RL++    +A+ G+ GKTTT   L    
Sbjct: 77  DNPEILQARSAGIPVI----PRAEM--LAELMRLKTG---VAVAGTHGKTTTTSFLGTIF 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    I     +         +P   ++ I E   S           + P I ++T
Sbjct: 128 KEAGLDPTVIIGGRLNK---YGSNALPGTGEYLIAEADES-----DGSFLTLLPIINIVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +  ++EI  +       +   G   +  DD     +  +     +    ++
Sbjct: 180 NIGADHLDYYRDLDEIRESFVRFMNNVPFYGLNVVCGDDPEIRQVLDRVKRPVL----TY 235

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  + +  +           +     Q     V  +  G H   N L  +G+      D 
Sbjct: 236 GFQEQSRLRAEILSTSPGSQFNVFHDQNFWGRVKLNHPGRHNVLNCLAAIGVAIQAGIDK 295

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +++L+ F     R +            ++ + Y  +P  + A +    Q  P     
Sbjct: 296 QDILRSLADFGGVGRRFE----RKGIKDDVIVVDDYGHHPTEIAATLETARQCHPDR--- 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALP 419
           R+ VL         ++ F  +   VL+      + L+           G +  +L   + 
Sbjct: 349 RLVVLFQPHRF-TRTRDFFGEFCRVLA--GADLLLLTEIYPASEDPIPGVNGWSLAQGVM 405

Query: 420 RSIH--VHYSETMDGLFLFIQSSLVDGDV 446
           +     V + +++D     + S L  GD+
Sbjct: 406 QVARTPVRFYQSLDEAGRDLDSVLKQGDL 434


>gi|221065159|ref|ZP_03541264.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
 gi|220710182|gb|EED65550.1| UDP-N-acetylmuramate [Comamonas testosteroni KF-1]
          Length = 487

 Score = 52.2 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/425 (14%), Positives = 114/425 (26%), Gaps = 46/425 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VV+   +A        +  + D   A       LA          ++A+ G+ GKTTT  
Sbjct: 85  VVSRKRLADGSPKFALMEAILDTGAAYTSGPQWLAEHVL--HGRHVLAVAGTHGKTTTTS 142

Query: 125 MLTIALSSIKKTYAC-IGSYNNHIGV---------PLTLARMPVDVDFGIFELGMSHLGE 174
           MLT  L          +G      GV         P+T      D    + E        
Sbjct: 143 MLTWVLECAGLQPGFLVGGVPLDFGVSARLGAVRRPVTGPGPVGDQPVFVIEADEYDTAF 202

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  AV+  +   H   F  +  I      +   +  TG +  N  +   
Sbjct: 203 FDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLVRTVPSTGRVVSNGLEESL 262

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGY 290
             + A+     +++  +     +AD     +                      ++     
Sbjct: 263 SRVLAQGCWSEVRSFGATVSDFSADGDPGDFAVLQRGQKVAQLRWSLTGVHNQLNALAAI 322

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A ++ ++  +     +      + + +     G       A +        +      
Sbjct: 323 AAADHLGVSAELACEALSRFQNVKRRMELRGTVNGIDVYDDFAHHPTAIRTTLDGLRRKL 382

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SG 408
            +          ++          LG M      S              +   V+   +G
Sbjct: 383 GA------QARILAVFEPRSNTMKLGTMKSQLPWSLE------------SADLVFCHTAG 424

Query: 409 FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               A +      +  S     +  ++ L   I +    GD + V  SN  GF  +   L
Sbjct: 425 LDWDAAEALESMGVGPSQRAQVAGDIETLIAQITAVARPGDHI-VCMSNG-GFGSIHAKL 482

Query: 465 LEEFP 469
           L+   
Sbjct: 483 LQALK 487


>gi|269792484|ref|YP_003317388.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100119|gb|ACZ19106.1| UDP-N-acetylmuramate/alanine ligase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 483

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 107/348 (30%), Gaps = 24/348 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  ML + +     +              +         D  + EL  S
Sbjct: 117 IGVAGTHGKTTTSSMLALVMERCDMSPTVAIGGELCD---IGCNAKLGSGDVMVAELDES 173

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                     L  P +AV+T +   H+ +++ ++++  A       ++  G + +  +D 
Sbjct: 174 -----DGSFELFSPQVAVVTNVDWDHVDHYASVDQVTDAFVRFVGKIKDGGALVICAEDG 228

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +     + G   +  +G   + D+                  +   +         
Sbjct: 229 GNQRVLNGIQSGGDVHVIRYGWGTSWDWGAVNVHPLKGGGIEADVYRRGELRGHISLSVS 288

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                +             V     A           +  +  L +       +  +   
Sbjct: 289 GEHNVLNALATCAVADLFGVSFESVAK-----VLKSFRGAKRRLQRVGSADGIDVLDDYG 343

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
              +   + +S +     GRRI V+         +Q+ + D A VL+L + S +      
Sbjct: 344 HHPREIKATISAVRGALPGRRILVVFQPHRY-TRTQAMYRDFASVLALADRSFILPIYPA 402

Query: 408 ------GFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVV 448
                 G     +  + P  +      ++ +     ++ + V GDVV+
Sbjct: 403 DEEPIEGVSSDLIAGSFPDGVGDPVCCDSFEDAVERVRETCVPGDVVL 450


>gi|283796967|ref|ZP_06346120.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
 gi|291075380|gb|EFE12744.1| UDP-N-acetylmuramate--alanine ligase [Clostridium sp. M62/1]
          Length = 465

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 128/384 (33%), Gaps = 38/384 (9%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++    R       IA++G+ GKTTT  ML+      +              V   L 
Sbjct: 109 LGEMMRNYREA-----IAVSGTHGKTTTTSMLSEIFLVAEADPTIS--------VGGILP 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  ++  G  E  ++   E         P I VI  I   H+  F  + +I S+     
Sbjct: 156 SIGGNIRVGGPEFFITEACEYTNSFLEFFPTIEVILNIEEDHMDFFKDLADIRSSFTRFA 215

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQSWM 272
           +   K G + +N +   ++ +   +       + +FG  +  D+   +    S    ++ 
Sbjct: 216 KKTPKQGAVVINGEIEDWQEIVKNTEG----RVITFGTDRGFDYSAGEISYDSLARPTFD 271

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                 K   +     G H   N L            ++   + L  F   + R ++   
Sbjct: 272 FYIRGEKRDTLSLGVSGEHNVYNALAAAAAALEAGLSLEAVKRGLLSFTGTKRRFEKKGV 331

Query: 333 ALNQGFFTLIDESYNANPASMKAAISV-----LSQISPHGEGRRIAVLGDMCEMGELSQS 387
                             AS+K A +           PH   R  A L +  E   LS +
Sbjct: 332 LNGVTIIDDYAHHPQEIRASLKTAQNYPHNRIWCVFQPHTYTRTKAFLDEFAE--ALSMA 389

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             I LA++ +      +   G     + + + R    V Y  T + +  F++ S + GD 
Sbjct: 390 DCIVLADIYAARETDTL---GISSRDIAEKIERLGKKVWYFHTFEEIEEFLKKSCIHGD- 445

Query: 447 VVVKSSNSCGFYRLI---NLLLEE 467
           +++      G   ++     LL E
Sbjct: 446 LLIT----MGAGDIVNVGEALLAE 465


>gi|88856510|ref|ZP_01131167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
 gi|88814164|gb|EAR24029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine
           actinobacterium PHSC20C1]
          Length = 508

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/372 (16%), Positives = 119/372 (31%), Gaps = 41/372 (11%)

Query: 97  KLAVAARLRSKAT--IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TL 153
           +LA   R ++      IAITG+ GKTTT ++    LS+             +IG+P+   
Sbjct: 113 ELAWRLRDKTGTPAEWIAITGTNGKTTTAQLAAHILSTAGFR----AGAVGNIGIPVLDA 168

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHL-VRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            R P   DF + EL    L  +       + P  +V   IA  HL         A+AKA 
Sbjct: 169 IRYPDGFDFLVVELSSFQLHGMPRTGVGAISPLASVCLNIADDHLDWHGSRAAYANAKAT 228

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWKQCSEQSW 271
           ++           N        +   +  +       FG                +++++
Sbjct: 229 VYANTRIAA--VYNRAVPSTLAMVEDADVIEGCRAIGFGLDTPGPSDFGIVSDLLADRAF 286

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG---K 328
            + +            + ++      M   +++         +   ++            
Sbjct: 287 GDDRHNVADELFTLDELRHNGLSAPHMIANVLAASALTRAAGVSIEALRAGVASFETDAH 346

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R +  L  G  + +++S   N  +  A++S +  +     G    V              
Sbjct: 347 RNQLVLLSGGVSWVNDSKATNSHAASASLSAVDPVVWIVGGLLKGV-------------- 392

Query: 389 HIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRS---IHVHYSETMD------GLFLFI 437
             D+A ++  +   +    + G   LA+  A  R    I V   ++ D            
Sbjct: 393 --DVAPLVQQHARRLKAAIVIGNDRLAILAAFERHAPQIPVFEVDSTDTKHVMPRAVEMA 450

Query: 438 QSSLVDGDVVVV 449
                +GD V++
Sbjct: 451 HGIATEGDTVLL 462


>gi|303228388|ref|ZP_07315221.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516890|gb|EFL58799.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 460

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/418 (14%), Positives = 131/418 (31%), Gaps = 49/418 (11%)

Query: 48  GPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH  D++     +G   VV +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNADYV-----QGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L   +     I               +  
Sbjct: 105 TNG---------IAVAGAHGKTSTTSMIGQILVEGQMEPTVIIGGEVDY--------LKG 147

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
               G  E  +    E       +RP   VIT I   H+ ++  +E + +A  +  E L 
Sbjct: 148 SSCLGKGEYSVVEADESDGSFLKLRPKTIVITNIEDDHMDHYKTMENLLNAFCQFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  D+     + +K      +   ++G   + D+  +           +V  +G
Sbjct: 208 VDGKAVVCGDNDNIRYVMSKV----ERQFITYGLEDSNDYVAKNIHYEDSSLVYDVVHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +++  V   +  +      +   IV+     V       ++      + +        G 
Sbjct: 264 ETLSRVSLRVPGNHNVLNSLASFIVAHECCHVPVPSIVKALGKFIGAKRRFETKGHVAGV 323

Query: 339 FTLIDESYNANPASMK-------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
           + + D +++                  V+    PH   R   +  +       +   +  
Sbjct: 324 WVVDDYAHHPTEIKATLKAAKELEKHRVICVFQPHRYSRTSLLKDEFATAFTSADEIY-- 381

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +       +  SG     + + +      HV+Y E ++ L   +   +   D+V
Sbjct: 382 -MTDIYSSGEDPI--SGIDGHTIPNIISEVTHQHVNYVEDVNDLPAVLAKVVRPNDLV 436


>gi|239917863|ref|YP_002957421.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
 gi|239839070|gb|ACS30867.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 531

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 118/413 (28%), Gaps = 57/413 (13%)

Query: 64  GAGL--VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATI---IA 112
           GA    VV +              +  +P++   DV     +LA   R R+       + 
Sbjct: 103 GAAADLVVTSPGWRPDQPLLMAAHAAGLPIW--SDV-----ELAWRLRERAGRKTADWVC 155

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSH 171
           +TG+ GKTTT  M+   L +             ++G P+    R P   D    EL    
Sbjct: 156 LTGTNGKTTTVTMVEAILRA----DGRRAVACGNVGTPVLDAIRDPQGFDVLALELSSFQ 211

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L     L     P  + +  +A  H+     +EE A+AK +++               + 
Sbjct: 212 LHWTHGLA----PASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVFNEQDPLTR 267

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             + +A          ++      +D  +              + +  ++          
Sbjct: 268 TLVERADVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIALAERADLGPVA 327

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
               M       ++  A   +           +    R +          +++S   NP 
Sbjct: 328 PRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIMWVNDSKATNPH 387

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  A+++  S +     G    V            ++H  +A     + +  V L G   
Sbjct: 388 AADASLAAFSSVVWLAGGLPKGV------------TYHELVAAHA--HRLRAVVLLGRDT 433

Query: 412 LALK----------------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            AL+                 A   +     +  M             GD V+
Sbjct: 434 SALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVL 486


>gi|188535054|ref|YP_001908851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
 gi|188030096|emb|CAO97982.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Erwinia tasmaniensis Et1/99]
          Length = 450

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 116/370 (31%), Gaps = 38/370 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+   L +       +       GVP             F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVAWILQACGYEPGFVIG-----GVPGNFDVSAKLGKSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   +   E++ + + +    +        
Sbjct: 160 DEYDCAFFDKRAKFVHYCPRTLILNNLEFDHADIY---EDLRAIQKQFHHLVRIVPGQGK 216

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                    LK            + G++     +           W       +  EV  
Sbjct: 217 IILPEHDANLKQVMAMGCWSEQEAVGENGCWQVKKLSPDASH---WEVWLDGERVAEVNW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H  +N +M +     +    + A +AL+ F     R +    +     +    + 
Sbjct: 274 SLVGEHNMRNGMMAIAAARHVGVKPEDAGRALNDFINARRRLELRGESNGIKVY----DD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A ++ L      G  R +AVL    +  +MG         L          
Sbjct: 330 FAHHPTAINATLAALRG-KVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR------AD 382

Query: 403 HVWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            V+L   H     V  + DA  +    H+S  +D L   I      GD ++V  SN  GF
Sbjct: 383 EVFLYQPHHIPWQVSEVADACIQ--PAHWSADIDTLVEAIAKIAHPGDTILV-MSNG-GF 438

Query: 458 YRLINLLLEE 467
             +   LL+ 
Sbjct: 439 GGIHQKLLDR 448


>gi|226329708|ref|ZP_03805226.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
 gi|225202894|gb|EEG85248.1| hypothetical protein PROPEN_03620 [Proteus penneri ATCC 35198]
          Length = 459

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMLA---WVLEDCGYKPGFLIGGVPGNFQVSAQLGESPFFVIEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   ++  +   H   F   +++A+ + +    +          
Sbjct: 162 YDSAFFDKRSKFVHYSPRTLILNNLEFDHADIF---DDLAAIQKQFHHLVRIVPGSGKII 218

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  LK              G++ +   +           +       +  EV    
Sbjct: 219 MPDNDMNLKQTIGMGCWSEQEFTGETGDWQAKKISNDSSH---FAVFHKGEQVGEVCWGL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  QN LM +     +      A +AL+       +    R  L           Y+
Sbjct: 276 SGEHNMQNGLMAIVAAHHVGVLPADACEALN-------KFINARRRLELRGEVNQVSVYD 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHV 404
                  A ++ L  +     G    +      +   S +  + +++     +L     V
Sbjct: 329 DFAHHPTAILATLEALRSKVGGTARII----AVLEPRSNTMKMGISKDDIAPALGRADEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    ++  L   +         +S  +D L   I      GD +++  SN  GF  + 
Sbjct: 385 FLFQPPNIQWLVSDIAEHCVQPARWSTDLDTLVDMIAKEAQAGDHILI-MSNG-GFGGIH 442

Query: 462 NLLLEE 467
             LL +
Sbjct: 443 EKLLAK 448


>gi|254509590|ref|ZP_05121657.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
 gi|221533301|gb|EEE36289.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           KLH11]
          Length = 469

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 75/408 (18%), Positives = 123/408 (30%), Gaps = 55/408 (13%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A +VVV+T +      L       +PV    D       LA   RLRS    IAI G+
Sbjct: 69  KNAAVVVVSTAIKPGNPELDEARAQGLPVVRRAD------MLAELMRLRSN---IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   + +           N  I             ++ + E   S      
Sbjct: 120 HGKTTTTTMMAELMVA---GDFDPTVINGGIIHAYGSNARMGQGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   +++     E    L   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGDFDQLRDGFHEFVSNLPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +     ++T     ++      L      +                     G H   N 
Sbjct: 232 GRITDRRVRTYGFNAQADVRAENLTYKGGVAHFDIHLQYEDKVIEGCTLPMPGDHNVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L         AL+ F     R       + +     I + Y  +P  + A 
Sbjct: 292 LSAVAVARHLGMKTAQIRDALANFGGVNRRF----TKVGEIDGVTIIDDYGHHPVEIAAV 347

Query: 357 ISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +    Q           PH   R  ++  D C                  +  I+ V+ +
Sbjct: 348 LKAARQATEGRVIAVHQPHRYSRLSSLFDDFCTCFND-----------ADVVAIAEVFAA 396

Query: 408 GFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           G           L   L R  H H     + D L   ++     GD+V
Sbjct: 397 GEDPIEGASRDDLVQGLIRHGHRHARAILSEDDLARLVREQARAGDMV 444


>gi|126741293|ref|ZP_01756971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
 gi|126717611|gb|EBA14335.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           SK209-2-6]
          Length = 465

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/394 (15%), Positives = 109/394 (27%), Gaps = 36/394 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK--ATIIAITG 115
             +V +  +  +     PV          VD D+       A            ++AITG
Sbjct: 68  AALVTSPGIPHLYPQPNPVIRSALEAGVPVDNDIGLFFASFAHQGWDMMDQPPKVVAITG 127

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+TT  +L   L S+ +          +IG  +     P D    + EL        
Sbjct: 128 SNGKSTTVALLHHILESVGRD----SQMAGNIGRGVLDIDPPADGGVVVLELSSYQ---- 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L   + P +A++T ++  HL   +G+    +AK  +F        I    +D    L 
Sbjct: 180 TELARALTPDVAILTNLSEDHLERHAGLGGYFAAKRRLFAEGGPDRAIIGIDEDEGLFLA 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              S A     +      K       +            + +  +   +    G     N
Sbjct: 240 GQLSQAAVDDRVIRISAKKKLTGPGWQIFARKGFLSEYRKGRQVASIDLRQMTGLPGEHN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                   +                    G   R +          +++S   N  S   
Sbjct: 300 HQNACAAYAAARVLGLAPRVIEQALDSYPGLPHRSQTIAEAAGVRYVNDSKATNLDSAIK 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+S   +I     G          E G  +              N+   ++ G       
Sbjct: 360 ALSAFPKIRWICGGLE-------KEGGLSALQG--------QTKNVQKAYVIGREAAGF- 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            A+   +      TM+            G+ V++
Sbjct: 404 -AMQLDVEAEVCTTMEQAVARAMEDAQSGETVLL 436


>gi|307544777|ref|YP_003897256.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
 gi|307216801|emb|CBV42071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Halomonas elongata DSM 2581]
          Length = 456

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 128/424 (30%), Gaps = 52/424 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G          V ++  L +P             LA          +IA+ G+
Sbjct: 67  VGNALSRG-------NPEVEALLDLGLPYVSGP------QWLAEHVL--PGRRVIAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA---RMPVDVDFGIFELGMSHLG 173
            GKTTT  ++   L +               GVP       R+       + E       
Sbjct: 112 HGKTTTASLVAWLLEAAGLAP-----GFLIGGVPRNFGISARLGASDAPFVVEADEYDTA 166

Query: 174 EIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                      RP IAV+  +   H   F  +  I      +   +   G + +   +  
Sbjct: 167 FFDKRSKFVHYRPEIAVLGNLEFDHADIFPDLAAIERQFHHLIRTVPGKGKLLVADGEPA 226

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH----HG 287
            + +  +     ++    FG+S ++D+ L   +  + +  +    +   ++       + 
Sbjct: 227 LDRVLEQGCWTPVER---FGQSPDSDWHLTLERDDAGRFRVSHGDEQVVVDWALSGTYNA 283

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                A       G+      +     +         G     R   +         +  
Sbjct: 284 YNALAALAAAHACGVSLSRGGEALARFETPRRRQELRGEVAGIRVIDDFAHHPTAIAATL 343

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               +      +L+ I P     R   LG + E           LA  ++  ++++ +  
Sbjct: 344 DGLRATDGQGRLLAVIEPRSNTMR---LGALRE----------RLAASVASADLAYWYQP 390

Query: 408 GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLIN 462
                AL   +  +       + +D L   + +    GD +VV  SN  GF     RL+ 
Sbjct: 391 AELDWALAPVIEAATTPSRAYDDLDTLVAALVAEARAGDRIVV-MSNG-GFGGIHERLLA 448

Query: 463 LLLE 466
            L E
Sbjct: 449 ALEE 452


>gi|295695332|ref|YP_003588570.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
 gi|295410934|gb|ADG05426.1| UDP-N-acetylmuramate/alanine ligase [Bacillus tusciae DSM 2912]
          Length = 466

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 124/372 (33%), Gaps = 38/372 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+   ++        I        V   ++ +  +   G+    ++
Sbjct: 108 IAVAGAHGKTTTSSMIAFVMNQAGLDPTYI--------VGGVISNLGENAKAGLGPYAVA 159

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDD 229
              E         P++AV+T I P HL N+    E +  A       + + G   L  DD
Sbjct: 160 EADESDGTFLNYHPYVAVVTNIEPDHLENYGGKFENLRGAYKRFLGQVREGGLAVLCADD 219

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGI 288
                L ++     +   +S G    AD+  +        S   V  + + + ++     
Sbjct: 220 PELSNLGSQLAGRTVWYGFSSG----ADWTAQDVDLHDGHSRCRVFYRREHVGDLTLSVP 275

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   + L  + +         T  + LS F   + R ++           LI + Y  
Sbjct: 276 GRHNISDALAAIAVCREAGIPFSTIAEILSSFRGAKRRFQQIADVAG----VLIVDDYAH 331

Query: 349 NPASMKAAISV--------LSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLY 399
           +P  ++A ++         ++   P    R   +L       + +      D+   +   
Sbjct: 332 HPTEIEATLAAARTTGRRIVAVFQPQRYTRTHFLLDQFSYAFKDADEVIITDIYSPVGEQ 391

Query: 400 NISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--- 454
            I     +G     L   +    +  V +      +   + S +  GD+V+   +     
Sbjct: 392 KI-----AGVSAERLAQLIRERSNERVWFLRQKQDVINDLLSRVHPGDLVLFMGA-GDIW 445

Query: 455 CGFYRLINLLLE 466
               +L   L +
Sbjct: 446 MAARQLAEALQD 457


>gi|262044868|ref|ZP_06017911.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037837|gb|EEW39065.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 438

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 121/376 (32%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A IIAITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIIAITGSNGKSTVTTLVGEMAKAAGINV----GVGGNIGLPALML-LDTDRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  ++   A I  +   H+  +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLQAVAATILNVTEDHMDRYPLGLQQYRAAKLRIYENAKTC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +           +  + G+         +  +  LR   +              +
Sbjct: 210 VVNADDALTMPVRGADERCISFGVDVGDYHLNRQQGETWLRVKGEKVLNVKEMPLTGQHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +                   +L V     G   R++  L+     
Sbjct: 270 YSNALAALALADAAGLPRA---------------SSLKVLTTFTGLAHRFQLVLDHNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L       +G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLQL-----DGTLYLLLG-----GDGKSADFTPLKRYLGGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L +  P       +ETM+     I   +  GD+V++    +S     
Sbjct: 365 I-RLYCFGRDGAELAELRPEV--AVQTETMEQAMRQIAPLVKAGDMVLLSPACASLDQFK 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 NFEQRGEMFARLAKEL 437


>gi|149922481|ref|ZP_01910913.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
 gi|149816676|gb|EDM76168.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Plesiocystis
           pacifica SIR-1]
          Length = 468

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 107/357 (29%), Gaps = 29/357 (8%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-IGVPLT 152
           AL   A   R         ITG+ GK+T   +    L +  ++    G+       + L 
Sbjct: 113 ALLVAASWPR---SLETALITGTNGKSTVTALTGALLEAGGRSTFTGGNLGVPLSELVLA 169

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           +AR   +    +     S+  E   +       +A++  ++P HL  +  +E  A  K  
Sbjct: 170 VARGEREAPEALVLECSSYQLETLRVHGSPAVSVAMLLNVSPDHLDRYDSLEHYAETKGR 229

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +F GLE  G   L+  D+F   L+ +      + +   G+           +  + +S  
Sbjct: 230 VFGGLEPGGLALLSARDAFTPRLR-RFVPEAARCVLVDGEDDRPRLSDASLELGAGESID 288

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              L                  N L  L  V        +     +     +    R   
Sbjct: 289 RRAL------------ALAGRHNALNALFAVLAARHLGVSLDTCEATLRRFQALPHRMNP 336

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +      D+S   N AS+ A +    Q         + + G   + G+   +    L
Sbjct: 337 IAERDGVRYFDDSKATNVASVLAGLDGFEQT-------FVLICGGRAKDGDDLGALRPVL 389

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A          +   G            ++       MD       S    GD V++
Sbjct: 390 ARQGRA-----LVALGESAEQFMAMAKGALPCVRVADMDEAVRVAASCAQPGDAVLL 441


>gi|222151005|ref|YP_002560158.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
 gi|254766053|sp|B9EB51|MURD_MACCJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|222120127|dbj|BAH17462.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Macrococcus
           caseolyticus JCSC5402]
          Length = 445

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 108/342 (31%), Gaps = 38/342 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-VPLTLARMPVDVDFGIFELG 168
           I+ ITG+ GKTT   ++     +    +   G    +IG V   +A+     D  + EL 
Sbjct: 113 ILGITGTNGKTTVTSLIGDMFKA----HEHAGLLCGNIGFVASKVAQNAGAHDTLVMELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L          RPHIA+IT I  AHL      +    AK +I +       +     
Sbjct: 169 SFQLM----GIQEFRPHIALITNIYSAHLDYHGNQQNYIDAKMQITKNQTSEDYLI---F 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     L    +       +S  +     +  +      ++  ++V+             
Sbjct: 222 NDKQRTLLQNYNIKSKVVYFSTDEKVEGAYIDQNKVYFYDEFIIDVKDIVLPGVHNLE-- 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+L ++    +   D       L  F   + R    +           ++S   
Sbjct: 280 ------NVLASIAAAKLAGIDNIHICDTLKTFEGIKHRL---QFVTETDGVKYYNDSKAT 330

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +   A+    Q +    G      G     G      HID        ++ H+++ G
Sbjct: 331 NTLATSFALDSFHQPTHWLAG------GLDRGNGFEELDTHID--------HVKHMYIFG 376

Query: 409 FHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L   A    I     + +    L   S +  G+VV++
Sbjct: 377 ETTEKLTAFAAQHHIPYTICKDVTDAVLKTASYVERGEVVLL 418


>gi|114564396|ref|YP_751910.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
 gi|114335689|gb|ABI73071.1| UDP-N-acetylmuramate [Shewanella frigidimarina NCIMB 400]
          Length = 479

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 115/375 (30%), Gaps = 25/375 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKT+T  ML      ++      G     +     ++    +  F + E   
Sbjct: 109 VLAVAGTHGKTSTSSMLA---WVLEYCGYEPGFLIGGVPQNFGVSARLGNSVFFVVEADE 165

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   VI  +   H   F+ +  I      +   +   G +    
Sbjct: 166 YDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQRQFNHVIRTVPGEGKVIWPS 225

Query: 228 DDSFFELLKAKSHALGIKTI---------------YSFGKSKNADFQLRKWKQCSEQSWM 272
           D    + +         +                          +    +        + 
Sbjct: 226 DVEAVQQVIDMGCWSEQEIYSKATSLTTGLAEHSVNVSANQGEPNAWQPRTIADDGHEFE 285

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +        V    IG H  +N +M +     +      AI+AL+ F P + R +    
Sbjct: 286 VLFKGESQGIVNWSLIGQHNIENAIMAIAAARHVGVAPSHAIEALAQFSPPKRRLELLAT 345

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                     D +++    +           S       I V+ +       S      L
Sbjct: 346 VNGVS--VYDDFAHHPTAIATTLQGLRAKVASSDNANGNIIVVLEPRSNTMKSGVHKDTL 403

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           A  + L ++ +++ +      +K ++  + I V     ++ +   + ++   GD VV+  
Sbjct: 404 ANSMVLADVGYLYQADNIDWDIKASMANAPIPVTVFNNIEDIINAVAATANQGDTVVI-M 462

Query: 452 SNSCGFYRLINLLLE 466
           SN  GF  +   +++
Sbjct: 463 SNG-GFNGIHQKMIK 476


>gi|254462310|ref|ZP_05075726.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           HTCC2083]
 gi|206678899|gb|EDZ43386.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 471

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 76/416 (18%), Positives = 130/416 (31%), Gaps = 49/416 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARL 104
           GH F+    +    A +VV+++ + +    L       +PV     V  A   LA   RL
Sbjct: 63  GHIFVGQKAENLESAEVVVISSAIKSGNPELDEARRRGLPV-----VRRA-EMLAELMRL 116

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     IA+ G+ GKTTT  M+   L +           N  I             ++ +
Sbjct: 117 KLN---IAVAGTHGKTTTTTMVATLLDA---GKFDPTVVNGGIIHAYGSNARMGQGEWMV 170

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S         + +   IA++T I P H+ ++   E +     +    +   G   
Sbjct: 171 VEADES-----DGTFNRLPATIAIVTNIDPEHMEHWGTEENLHQGFLDFTSNIPFYGLAI 225

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD+  + L  K     + T     ++      L      +                 
Sbjct: 226 CCTDDADVQTLVGKLTDRRVVTYGFNAQADVRAVGLHYKGGVAMFDIHLQNEDQVIEGCS 285

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  + +   L    D   +AL+ F     R  +            I +
Sbjct: 286 LPMPGDHNVSNALSAVAVARHLGMSGDEIRRALAAFGGVNRRFTKVAEIDG----VTIID 341

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLY 399
            Y  +P  + A +          EGR IA+     +    ++  H             + 
Sbjct: 342 DYGHHPTEISAVLKAA---RQASEGRVIAI----HQPHRYTRLHHHFEDFCSCFNEADVV 394

Query: 400 NISHVWLSGFHV------LALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVV 447
            I+ ++ +G           L   L R  H H     T D L   ++     GD+V
Sbjct: 395 AITEIYAAGEEPIEGASRDDLVAGLIRHGHRHARSITTQDELTALVKEQAKPGDMV 450


>gi|158426180|ref|YP_001527472.1| UDP-N-acetylmuramate--L-alanine ligase [Azorhizobium caulinodans
           ORS 571]
 gi|172047924|sp|A8HZ95|MURC_AZOC5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|158333069|dbj|BAF90554.1| UDP-N-acetylmuramate-alanine ligase [Azorhizobium caulinodans ORS
           571]
          Length = 467

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 78/410 (19%), Positives = 131/410 (31%), Gaps = 57/410 (13%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA +VVV++ +      L +     +  V  A   LA   RL+S    +AI G+ GKTTT
Sbjct: 66  GAEVVVVSSAIKRDNPELLAARAKRLPVVRRA-EMLAELMRLKS---CVAIAGTHGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             ++   L         I     +              D+ + E   S           +
Sbjct: 122 TSLVATLLDKGGFDPTVINGGIIN---AYGTNARLGAGDWMVVEADES-----DGTFLKL 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +A+IT I P HL +F   +++  A     E +   G   +  D    + L  +    
Sbjct: 174 PAEVAIITNIDPEHLDHFKTFDKVQEAFRTFVENVPFYGFAVMCIDHPVVQALVGRIEDR 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-------QGKSMEVVHHGIGYHMAQN 295
               I ++G++  AD +L         +   V         + +   +     G H A N
Sbjct: 234 ---RIITYGENPQADVRLVDVDLRGGITRFGVVFRDRAGTAEHRIDGLKLPMPGKHNALN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               + +   L    D  I+A+  F   + R  R            I + Y  +P  + A
Sbjct: 291 ATAAIAVARELRVPDDRIIEAIGGFGGVKRRFTRTGEWKGA----TIFDDYGHHPVEISA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL-----YNISHVWLS--- 407
            +          EG+ IAV+             +  LA +         +  HV ++   
Sbjct: 347 VLRAA---RAATEGQVIAVV---------QPHRYTRLASLFDEFCTCFNDADHVIVAPVY 394

Query: 408 --------GFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                   G     L   L    H  V   +  + L   +      GD V
Sbjct: 395 AAGESPVPGADSEHLVQGLRARGHRSVTALKGPEELAGLVAGLAKPGDFV 444


>gi|289704957|ref|ZP_06501372.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
 gi|289558293|gb|EFD51569.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Micrococcus
           luteus SK58]
          Length = 527

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 60/413 (14%), Positives = 118/413 (28%), Gaps = 57/413 (13%)

Query: 64  GAGL--VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATI---IA 112
           GA    VV +              +  +P++   DV     +LA   R R+       + 
Sbjct: 99  GAAADLVVTSPGWRPDQPLLMAAHAAGLPIW--SDV-----ELAWRLRERAGRKTADWVC 151

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSH 171
           +TG+ GKTTT  M+   L +             ++G P+    R P   D    EL    
Sbjct: 152 LTGTNGKTTTVTMVEAILRA----DGRRAVACGNVGTPVLDAIRDPEGFDVLALELSSFQ 207

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L     L     P  + +  +A  H+     +EE A+AK +++               + 
Sbjct: 208 LHWTHGLA----PASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVFNEQDPVTR 263

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             + +A          ++      +D  +              + +  ++          
Sbjct: 264 TLVERADVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIALAERADLGPVA 323

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
               +       ++  A   +           +    R +          +++S   NP 
Sbjct: 324 PRHTVANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIMWVNDSKATNPH 383

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  A+++  S +     G    V            ++H  +A     + +  V L G   
Sbjct: 384 AADASLAAFSSVVWLAGGLPKGV------------TYHELVAAHA--HRLRAVVLLGRDT 429

Query: 412 LALK----------------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            AL+                 A   +     +  M             GD V+
Sbjct: 430 SALRAALAAHAPEVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVL 482


>gi|255659950|ref|ZP_05405359.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
 gi|260847824|gb|EEX67831.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mitsuokella
           multacida DSM 20544]
          Length = 466

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 105/348 (30%), Gaps = 37/348 (10%)

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +        +IGVPL+   + +     I     S+  E     H   PH+A +  + P H
Sbjct: 138 HYDKVGVGGNIGVPLSEEALRIGRGGCIAAEISSYQMEATEHFH---PHVAAVLNVTPDH 194

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +     +E   + K  +F    +   + LNYDD     +KA++ A     +  F + +  
Sbjct: 195 IVRHGSMEVYQAMKERLFREETEDDYLVLNYDDEKTRGMKARTVAQ----VCYFSRREEL 250

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +  +           +      +        +G     N+   L  +++           
Sbjct: 251 EEGVFVRGDVKNGLIVIRWQGQEYELCHTDELGIKGPHNVENALAAIAVAFFAGCEPTLM 310

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           + V     G   R             ++S   N  S   A+           G  I + G
Sbjct: 311 VPVLKSFRGVEHRIEYVTTIDGVPYYNDSKATNTDSAIKALETFD-------GHIILLAG 363

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-----DALPRSIHVHYSETMD 431
                G+   +   D  +++    +  + L G            +  P +       +M 
Sbjct: 364 -----GDDKMTDLTDFMKLVCER-VDALVLIGRAAARFYGAAVDNGFPENQIYAAGYSMR 417

Query: 432 GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
                  +   +  VV++    +S             F  L++ L ++
Sbjct: 418 KAVEIAHALAKEPAVVLLSPACASFDMYHDMAERGRDFKHLVHELEQQ 465


>gi|332531947|ref|ZP_08407831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038574|gb|EGI75017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 444

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 130/385 (33%), Gaps = 42/385 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           + +++M+     LS+ +  V + + A    +  + + AR+ +K  ++A+TGS GK+T   
Sbjct: 69  LCSSNMIIISPGLSLKIPAVANAINAGVEVIGDVELFARINTK-PVVAVTGSNGKSTVVT 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +    L       A  G+          L  +  D D  + EL    L      T  ++P
Sbjct: 128 LAYEVLKEAGYKVALGGNIGT-----AVLDLLNDDFDVYVLELSSFQLD----TTTSLKP 178

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
             A +  ++  HL  +   +    +K  I++G E              + ++      G 
Sbjct: 179 VSATVLNVSEDHLDRYDSYQAYIDSKLSIYDGAELIVVNA--------DDIQTHPVERGT 230

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + SFG  +          Q + ++   ++            +G H   N L  + ++S
Sbjct: 231 TPLISFGAQQGD----YHLAQHNGETHFMLKGDAFLPVDTLAVVGKHNYLNTLAVMALLS 286

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                      AL  F+    R    +           ++S   N  +  AAI  L+   
Sbjct: 287 PFEVSKAQYKNALGQFNGLAHRC---QFVAELNGVKYFNDSKATNVGATIAAIDSLA--- 340

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
              +G  + V+      G    +    +       ++  +   G     L     +S   
Sbjct: 341 --SDGENLIVIAGGDAKGADLNALKPYI-----EQHVKALICFGKDASDLAAITNKS--- 390

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
           + +  M+            G++V++
Sbjct: 391 YLTNNMEEAVALANVLSSTGNIVLL 415


>gi|168230405|ref|ZP_02655463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469017|ref|ZP_03075001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248149|ref|YP_002145112.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194455381|gb|EDX44220.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|197211852|gb|ACH49249.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205334952|gb|EDZ21716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 438

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 121/375 (32%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S      LA  L+   I
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP-----LARYLTGDRI 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G        AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQFA-ALRPEI-AQQTETMEEAMRLLAPRVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|90416337|ref|ZP_01224269.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
 gi|90332062|gb|EAS47276.1| UDP-N-acetylmuramate--alanine ligase [marine gamma proteobacterium
           HTCC2207]
          Length = 485

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 141/415 (33%), Gaps = 48/415 (11%)

Query: 62  QKGAGLVV--VNTDMVASIGSLSIPVFGVDDVLGALNK------------LAVAARLRSK 107
             GA + +     +++ +   +      V++   A  +            LA   R R  
Sbjct: 58  AAGATVFIGHSEANIIGANVVVKSSAVTVENTEIAAARAQGIPVVRRAEMLAELMRYRHG 117

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++T  L+   +    +     +               + + E 
Sbjct: 118 ---IAIAGTHGKTTTTSLITAILAEDGRDPTFVVGGRVNS---AGTNAKLGGSRYLVAEA 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLN 226
             S    +      ++P +AV+T I   H+  +      +     E    L   G   + 
Sbjct: 172 DESDASFLH-----LQPMVAVVTNIEADHMETYDFDFSRLTKTYIEFLHNLPFYGLAVMC 226

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VV 284
            DD     L         + + ++G S +A +++R       +S   ++      E  V 
Sbjct: 227 IDDPVIRDLL----VDVARPMLTYGFSDDAAYRVRDLTVDQGRSTFVIERPDGLAELQVS 282

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLID 343
            +  G H A N    + + S         I+ LS F     R + Y    L  G   ++ 
Sbjct: 283 LNMPGRHNALNAAAAIAVASDEGISDRAIIQGLSSFSGVGRRFEIYGDYQLESGGSAMLV 342

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P  +KA +  +    P        V+         ++  + D  +VL+  ++  
Sbjct: 343 DDYGHHPTEIKATVDAVRGGWPDK----RLVMIFQPHRYTRTRDLYEDFVKVLAEVDVLI 398

Query: 404 VWLS---------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
           +            G     L  ++ +   V   Y+ET++ +   +   + D D+V
Sbjct: 399 LLAVYPAGEEMIAGASSKNLSGSIRQRGTVDPIYAETIEEIPALLNGLVQDNDLV 453


>gi|312869526|ref|ZP_07729681.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
 gi|311094973|gb|EFQ53262.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           oris PB013-T2-3]
          Length = 458

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 126/418 (30%), Gaps = 56/418 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA--------LNKLAVAARLRSKATIIAITGSVGKT 120
           + + D    + +  IP    D+ L A        +   A          ++++TGS GKT
Sbjct: 68  LADRDFAVVVKNPGIPY---DNPLVAKFVEKGTPIITEAELGWEIFAGHLVSVTGSNGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT   LT  + +   T+    + N  +        +  + D  + EL    L        
Sbjct: 125 TTTT-LTQLMLAKSSTHNVKYAGNIGVSFSRVAEELGPE-DTLVTELSSFQLLGA----P 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            + PHIA+IT I   HL      E   +AK  I         + +N+D   ++ +  ++ 
Sbjct: 179 TIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLIMNWDRDEWQEIARRTR 238

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A  +                       E   +  + +          IG     N L  +
Sbjct: 239 ATVVPFSR---------QGKSHAGAYEEDGAIYWRGERIMAARDIRLIGPQNVGNALAAI 289

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +     +  +  L+ F     R    +  L+       ++S + +  + + A+   
Sbjct: 290 AAAKLSGVSNEDIVSVLTTFSGVRHRL---QYVLDYQGRRFYNDSKSTDIEATEVALQGF 346

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
            Q      G            G         L       ++  + + G     +KDA  +
Sbjct: 347 DQPVILLAG------------GLDRGYTFERLVPYFKE-HVKGIIVFGQCKDKMKDAAEQ 393

Query: 421 SIHVHYSETMDG--LFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           +      E+ +              GDV+++    +S             F   +  L
Sbjct: 394 AGIPMIIESENAVTAVPEAWKISEPGDVILLSPANASWDQFPSFEVRGDRFIEAVEKL 451


>gi|270284926|ref|ZP_06194320.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|270288953|ref|ZP_06195255.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Weiss]
 gi|30316140|sp|Q9PLG5|MURD_CHLMU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 416

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 104/404 (25%), Gaps = 74/404 (18%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           ++ D      + +  +  V D+     +LA   +   +     ITG+VGKTTT   L   
Sbjct: 68  ISKDHPWVKAARAAQISVVTDI-----QLAFQTKEFIEQKSFGITGTVGKTTTILFLEYL 122

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L               ++GVP+            +  + MS        T        +I
Sbjct: 123 LRKAGI----PAFAMGNVGVPILDGMQNSG----VRLVEMSSFQLADQETSYPVLSGGMI 174

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+  HL       E   +K  +   +     +++                        
Sbjct: 175 LNISDNHLDYHGSFLEYCQSKQNLSLCMRNPEDLWVG----------------------- 211

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D +        E       L  +S     +    +           +      
Sbjct: 212 -------DQRFCGRSYWEEVQKYMRLLDKESALKPLYLHDKYNYCCAY-----LLAQAEF 259

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  +      +    R      +     I++S      + + A+  +         
Sbjct: 260 PIAKSLFIEAVATFKKPSHRMEYLGEKCGVHYINDSKATTVRATEKALLSI-------GS 312

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R I +LG     G       + L   L  +    V   G     +   L     V     
Sbjct: 313 RAIVILG-----GRNKGYSFVSLLPSLRRFA-KSVVAMGECAQEIAQDL-DGFPVTVVRN 365

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           +    L  +   + GDVV++    +S             F +L+
Sbjct: 366 LHEALLCAEEQAIPGDVVLLSPACASFDQFRSYEERGAIFKQLV 409


>gi|238791173|ref|ZP_04634812.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
 gi|238729306|gb|EEQ20821.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia intermedia ATCC
           29909]
          Length = 491

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 79  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + +  ++AL  F     R              +    ++ + Y  +P 
Sbjct: 298 AAAVAVATEEGIEDEDILRALVGFQGTGRRFDFLGNFPLMPVNGKEGSAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        + +   +   L   D+++V+ 
Sbjct: 414 EPPIPGADSRSLCRTIRNRGKLDPILVSDSETVPEVLAQVLNGDDLILVQG 464


>gi|120600140|ref|YP_964714.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
 gi|120560233|gb|ABM26160.1| UDP-N-acetylmuramate [Shewanella sp. W3-18-1]
          Length = 464

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 18/360 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++      G     +     ++    +  F + E   
Sbjct: 108 VLAVSGTHGKTSTSSMLA---WILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEADE 164

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   VI  +   H   F+ +  I      +   +   G I    
Sbjct: 165 YDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWPV 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    +           +  ++         +           +           +    
Sbjct: 225 DAQSVKQTIDMGCWSKQEHYHTAESITGWYGKALSDDCHC---FEVFFDGESQGVLEWDL 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H  +N +M +     +      AI+AL+ F P + R +          +    + + 
Sbjct: 282 IGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLGTVNGISVY----DDFA 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++    + L  +       +I V+ +       S      LA  +   + + ++ +
Sbjct: 338 HHPTAI---ATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQADEAFLYQA 394

Query: 408 GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +K+A+  S I V     +D +   + ++   GD +VV  SN  GF  L   LL 
Sbjct: 395 DTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV-MSNG-GFGGLHKKLLA 452


>gi|297739715|emb|CBI29897.3| unnamed protein product [Vitis vinifera]
          Length = 479

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 110/361 (30%), Gaps = 24/361 (6%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
             A     R    I+A+TG+ GK+T        LS +       G+    +         
Sbjct: 107 DFAAEILPR-SIKILAVTGTNGKSTVATFSGQMLSHLGIEVFVGGNLGIPLSEAAIQCLT 165

Query: 157 PVDVDF----GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      + E+    L           P +AV+  +   HL     ++  A  K  
Sbjct: 166 CPSPKPVFQVAVVEVSSYQL---EVPNKHFCPSVAVVLNLTSDHLERHKTMKNYAITKCR 222

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +   +             F   L  ++    +  +           ++ K ++ +     
Sbjct: 223 LLSHMTN----SKLGILPFGNKLLNEAMEELVNEVNLAWIGAFPGVKVDKEEKVASLRVP 278

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            + +  +      + +G H   N  +    V  L   +DT   + ++   +    +    
Sbjct: 279 AIGVVSELKLGALNVMGTHNYYNAAVAALSVLGLDMGIDTEAISSTIEKLRVPPHRMQIV 338

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHID 391
             +    T ID+S   N  +        + +    E + + +LG + ++      +    
Sbjct: 339 HKDSYGVTWIDDSKATNVEA------TYTGLLGLKEQKSVILLGGLAKVSNSQESNGFEQ 392

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L E L  +    V   GF    ++  L     SI    +  ++      +S    GD VV
Sbjct: 393 LVEPLKYHRC--VITFGFSGPLIQKTLSDDGLSIPCFEAANLEDAVNCARSVARYGDAVV 450

Query: 449 V 449
           +
Sbjct: 451 L 451


>gi|46204165|ref|ZP_00209293.1| hypothetical protein Magn03004223 [Magnetospirillum
          magnetotacticum MS-1]
          Length = 75

 Score = 51.8 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 17 HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           +   +    V G++ DSR + P   F A+ G   DG  F
Sbjct: 12 EAEAGLADRAVAGLTADSRKVVPGGVFVAVPGTAADGRLF 51


>gi|6979688|gb|AAF34599.1| Irb1 [Vibrio cholerae]
          Length = 48

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 37 IAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
          I   + F AI+G   DG  FI  A+ +GA LV+   D     G
Sbjct: 1  IKSGDTFVAIQGHAEDGRQFIDKAIAQGANLVLAEADAQHLNG 43


>gi|332160413|ref|YP_004296990.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607126|emb|CBY28624.1| UDP-N-acetylmuramate--alanine ligase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664643|gb|ADZ41287.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 460

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 74/411 (18%), Positives = 139/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 48  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 98

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 99  KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 153

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 154 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 210

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 211 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 266

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 267 AAAVAVATEEGIEGDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPT 326

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 327 EVDATIKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 382

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L   D+++V+ 
Sbjct: 383 EPPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 433


>gi|296134865|ref|YP_003642107.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
 gi|295794987|gb|ADG29777.1| UDP-N-acetylmuramate/alanine ligase [Thiomonas intermedia K12]
          Length = 469

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 84/428 (19%), Positives = 137/428 (32%), Gaps = 47/428 (10%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAV 100
            AI      GHD    A  + A  VVV+T + A    +         V      L +L  
Sbjct: 53  VAI------GHD---AAHVQDADAVVVSTAVRADNPEVLAARARHIPVVPRAVMLAELMR 103

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             R       IAI G+ GKTTT  ++   L+        +     +           V+ 
Sbjct: 104 LKRG------IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLN--------SAGVNA 149

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-EK 219
             G  E  +    E       + P +AV+T I   H+  +             F      
Sbjct: 150 KLGQGEYIVVEADESDASFLNLLPVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLPF 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  DD+    +            ++      A     +  Q          +Q  
Sbjct: 210 YGAAVLCVDDAAVRGIMPFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFTVLRRNGVQLP 269

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGF 338
            + V  +  G H  QN L  + + + L  D     +AL+ F     R +RY   A + G 
Sbjct: 270 PLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEVAAHHGG 329

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  M A ++      P        VL         ++    D  +VL  
Sbjct: 330 HFTLIDDYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRYTRTRDLFEDFVKVLGE 385

Query: 399 YN---ISHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            +   ++ V+ +G   L   D   L R++ V       + E +  L   I     +GD V
Sbjct: 386 ADAVLLAEVYAAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILEMAREGD-V 444

Query: 448 VVK---SS 452
           ++     S
Sbjct: 445 LICMGAGS 452


>gi|251780203|ref|ZP_04823123.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084518|gb|EES50408.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 460

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 113/364 (31%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +    +       +AI+G+ GKTT   ML+            +      I     
Sbjct: 101 EFLGNIMKGHKYN-----VAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDIIGGNF 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D+ I E       E +       P++ VI  I   HL  +  I+EI     +
Sbjct: 156 RIG---SSDYFITEAC-----EYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G +     D     +K   +     T+    ++ +   +   + +    S+ 
Sbjct: 208 FADLIPNDGYLIGYIGD---SRVKEILYKAKCNTLSYGFENADVTARNITFNEKGCASFD 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +   K  ++     G H   N L ++ +  I   + D  I  LS       R +    
Sbjct: 265 VYKHNNKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSECKGAHKRFEYKGE 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI--------AVLGDMCEMGEL 384
                    + + Y  +P  +KA ++   +I  +                L D       
Sbjct: 325 VNG----VTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPHTYTRTKTLFDEFTDAFF 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                + +    +    + +  S    +AL+    + +      + D    ++++S    
Sbjct: 381 DADEVVLMDIYAAREKDTGLVSSNDLGVALR---AKGVKCTNVHSHDEALEYLKNSAKPN 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|291616273|ref|YP_003519015.1| MurC [Pantoea ananatis LMG 20103]
 gi|291151303|gb|ADD75887.1| MurC [Pantoea ananatis LMG 20103]
 gi|327392725|dbj|BAK10147.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Pantoea ananatis
           AJ13355]
          Length = 491

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/396 (13%), Positives = 98/396 (24%), Gaps = 37/396 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPELVAAREQRIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +AV+T
Sbjct: 142 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAVVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD+    L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDAVIRDLLPRVGRQITTYGFS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ----------GKSMEVVHHGIGYHMAQNMLMT 299
                  +   ++  Q       + +              ++                  
Sbjct: 254 DDADFRIEAFEQRGAQVHFSLIRQDKAPLQITLNAPGRHNALNAAAAVAVASEEGIEDSA 313

Query: 300 LGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +                       P  G+        + G      ++      +     
Sbjct: 314 ILAALESFQGTGRRFDQLGEFPTEPVNGQPGTAMLVDDYGHHPTEVDATIKAARAGWPDK 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +     PH   R   +  D   +        +          I      G    AL  A
Sbjct: 374 KLAMVFQPHRYTRTRDLFDDFANVLSQVDVLLMLDVYAAGETPI-----PGADSRALCRA 428

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     V        D L   +   L   D+++V+ 
Sbjct: 429 IRHRGKVDPILVPEHDALVEMLAPLLSGNDLILVQG 464


>gi|261823145|ref|YP_003261251.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
 gi|261607158|gb|ACX89644.1| UDP-N-acetylmuramate [Pectobacterium wasabiae WPP163]
          Length = 461

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 130/418 (31%), Gaps = 45/418 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   +  +S P +  D VL          R R    +IA+ G+
Sbjct: 67  IGNAMSRGNPC--VEAVLEQGLPYVSGPQWLHDYVL----------RDRW---VIAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+T         Y          G     AR+  D  F + E          
Sbjct: 112 HGKTTTAGMVT--WILEDCGYQPGFVIGGVPGNFTVSARLG-DSPFMVLEADEYDCAFFD 168

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                    P   V+  +   H   F  ++ I      +   +  TG I    +D   + 
Sbjct: 169 KRSKFVHYCPRTLVLNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIISPTNDLNLKQ 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           + A       + +   G  +                +          EV    +G H   
Sbjct: 229 VMAMGCWSEQELVGEEGVWRAQ------KVAIDASQYQVYLNNELVGEVHWKLVGEHNMH 282

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N LM +     +      A +A           +R            + + +  +P ++ 
Sbjct: 283 NGLMAIAAAHHVGVLPADACRA----LGGFINARRRLELRGTEHGVAVYDDFAHHPTAI- 337

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVWLSGFH- 410
             ++ LS +     G    +   + E    +        +LA  L+      V+L     
Sbjct: 338 --LATLSALRSKVGGTARIL--AVLEPRSNTMKLGMCKNELAPSLARA--DEVFLFQPTH 391

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++ A       H+S  +D L   I  +   GD ++V  SN  GF  + N LL+
Sbjct: 392 IPWQVVEVAEACIQPAHWSADIDTLVENIVKTAQPGDHILV-MSNG-GFSDIHNKLLD 447


>gi|126701142|ref|YP_001090039.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile 630]
 gi|254977143|ref|ZP_05273615.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-66c26]
 gi|255094472|ref|ZP_05323950.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile CIP
           107932]
 gi|255102728|ref|ZP_05331705.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-63q42]
 gi|255308549|ref|ZP_05352720.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile ATCC
           43255]
 gi|255316223|ref|ZP_05357806.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-76w55]
 gi|255518885|ref|ZP_05386561.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-97b34]
 gi|255652064|ref|ZP_05398966.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-37x79]
 gi|260685038|ref|YP_003216323.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260688696|ref|YP_003219830.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
 gi|306521800|ref|ZP_07408147.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           QCD-32g58]
 gi|123066482|sp|Q181B7|MURC_CLOD6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115252579|emb|CAJ70422.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Clostridium
           difficile]
 gi|260211201|emb|CBA66689.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           CD196]
 gi|260214713|emb|CBE07377.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium difficile
           R20291]
          Length = 450

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 135/385 (35%), Gaps = 38/385 (9%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L ++    +       IA++G+ GKT+T  ML+            +   N  +   +  
Sbjct: 93  FLGQIMREYKNS-----IAVSGTHGKTSTTSMLSTIFEYADLDPTILVGGNLSM---IGG 144

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                + +  I E       E         P I+++  +   HL  FSGI+EI ++  + 
Sbjct: 145 NVKIGNSNHFITEAC-----EYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKF 199

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L   G   +N DD   + +            Y      +A  +   +       +  
Sbjct: 200 GKLLPPEGYFIINGDDENIDDIL--YDVKATIIKYGRDSDNDAVIKDIHFDNSGHGIFRI 257

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                   E      G H   N    +    +   D++T  K + ++     R +     
Sbjct: 258 EYEGRDLGEFELSVYGLHNIYNASSAIMAALVSGIDLETIRKNIKIYKGVGRRFETKGYY 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISP---HGEGRRIAVLGDMCEMGELSQSFHI 390
            N     L+ + Y  +P  +KA ++   ++         +          +GE S++F+ 
Sbjct: 318 KNA----LVVDDYAHHPTELKATLAAAKKLKKSTLWCIFQPHTYTRTKSLLGEFSEAFYA 373

Query: 391 DLAEVLSLYNISHVWLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVD 443
                     I+ ++ +        H   L + L   ++   Y +  + +  +++ ++ D
Sbjct: 374 -----ADKVIITDIYAAREKDPGDIHSKDLVEKLYQNNVDAIYIKEFEDIVKYLRENVKD 428

Query: 444 GDVVVVKSSNSCG-FYRLINLLLEE 467
            D+V + +    G  Y++ +LL+E+
Sbjct: 429 NDLV-ITA--GAGPIYKVADLLVEK 450


>gi|153006723|ref|YP_001381048.1| UDP-N-acetylmuramate--L-alanine ligase [Anaeromyxobacter sp.
           Fw109-5]
 gi|166222952|sp|A7HH68|MURC_ANADF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|152030296|gb|ABS28064.1| UDP-N-acetylmuramate--alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 458

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 125/389 (32%), Gaps = 41/389 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V       IP+         +  LA   RL+     +AI GS GKTTT  +    L
Sbjct: 80  DNPEVVEARRRKIPII----PRAEM--LAELMRLKYG---VAIAGSHGKTTTTSLAAHLL 130

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +     +              D+ + E   S           + P IA++T
Sbjct: 131 AHAGLDPTAVVGGKVNT---FGSNAKLGRGDYMVVEADES-----DGSFLHIPPTIAIVT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL ++   E +     +    +   G   L  D    + L  +  +       ++
Sbjct: 183 NIDPEHLDHWKTEEALRKGFLDFVNRVPFYGRAILCIDHPTVQSLLPEVES----RYVTY 238

Query: 251 GKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G+S  AD++    +        +  +            +G H A N L  + I   +   
Sbjct: 239 GESHQADYRADGIEVSGHAVRFDAFRRDEPLGRFEVRLVGRHNALNALAVVAIADEMGVP 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            D   +AL+ F   + R         +     + + Y  +PA +K      + +      
Sbjct: 299 ADVTREALASFGGVQRRFT----VRGEAGGVTVVDDYGHHPAEVK-----ATLLGAREAF 349

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVL--ALKDALPRSIHV 424
            R  V          ++    + A   +  ++   + ++ +G   +  A  +AL  +I  
Sbjct: 350 HRRVVCLFQPHRYTRTRDLLPEFATAFNDADVLLLTDIYAAGEEPIPGATSEALAEAIRA 409

Query: 425 HYSETMD-----GLFLFIQSSLVDGDVVV 448
                +       L    +  +  GD+V+
Sbjct: 410 CGHRDVSLVPRPELARAARQRVRPGDIVL 438


>gi|85058335|ref|YP_454037.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
 gi|84778855|dbj|BAE73632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Sodalis glossinidius str.
           'morsitans']
          Length = 455

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 106/363 (29%), Gaps = 24/363 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+       +  Y          G     AR+     F +     
Sbjct: 105 VIAVAGTHGKTTTAGMVA--WILEEFGYQPGFVIGGVPGNFAVSARLGDGPFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNMEFDHADIFDDLKAIQKQFHHLIRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   +              +S  +    +   R  K   + S  EV L      V     
Sbjct: 223 DVNLK-------HTVAMGCWSETEYTGEEGVWRAKKVAPDASGFEVFL--HYEPVGTVNW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 NM   L  V+ +         A           +R          T+ D+  + 
Sbjct: 274 QLVGEHNMHNALMAVAAVRHVGVQPADACRALDGFINARRRLELKGTVNGVTMYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWLS 407
             A     ++ L+ +     G    +   + E    +    +   E+         V+L 
Sbjct: 334 PTA----ILATLAALRSKVGGTARII--AVLEPRSNTMKMGLSKNELAPSLGRADEVFLY 387

Query: 408 GF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              H+      +  +     H S  +D L   +  +   GD ++V  SN  GF  +   L
Sbjct: 388 QPQHIPWQVSEVAEACVQPAHCSADVDTLVEMVVKTAQPGDYILV-MSNG-GFGGIHAKL 445

Query: 465 LEE 467
           L +
Sbjct: 446 LHQ 448


>gi|254468605|ref|ZP_05082011.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
 gi|207087415|gb|EDZ64698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [beta
           proteobacterium KB13]
          Length = 444

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 125/377 (33%), Gaps = 55/377 (14%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDF 162
            R K  +I ITG+ GKTT   +L   L               +IG+P+          D+
Sbjct: 103 DRKKTKLIGITGTNGKTTFCSLLASIL----SFNDLKSIAVGNIGIPILNILTTQNKFDY 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    +  +  +T        VI  I P HL  +    +  +AK ++         
Sbjct: 159 IVVELSSYQIEVLDKMTV---FDYGVILNIEPDHLDRYDSFIDYKNAKLKLANHS----- 210

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
                        K   H      +     +   D +    ++     +   +       
Sbjct: 211 -------------KTILHDKESAVVNDHANAFPIDPKDFHIEEIKTDFFTFKKQNKIYRI 257

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
              +  G H  +N++  L ++ I+     +  K  + F  ++G   R+        +  I
Sbjct: 258 DTPYLKGVHNVKNIMYLLKLLEIMN-CNISFEKVRNFFRNQKGIPHRFEYLSIDNNYIFI 316

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N AS K+A++ L        G+   + G     G+L       +    +   IS
Sbjct: 317 NDSKATNLASTKSALNSL-------NGKIHLLFG-----GDLKNQPLDGIENFFNEKLIS 364

Query: 403 HVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
            + L G   + +KD L        +    +++ +   I+  +   +++++    +S    
Sbjct: 365 -LNLYGKDAVIIKDYLLNKKIKFDMKCFVSLEAILESIKKIVKKDEIILLSPGCASQDMF 423

Query: 453 -----NSCGFYRLINLL 464
                    F  +   +
Sbjct: 424 MNYQDRGNQFVEVCKKI 440


>gi|303232778|ref|ZP_07319463.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
 gi|302481264|gb|EFL44339.1| UDP-N-acetylmuramate--L-alanine ligase [Atopobium vaginae
           PB189-T1-4]
          Length = 503

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 101/354 (28%), Gaps = 24/354 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L   A  IA+ G+ GKTTT  M+      +             I             D+
Sbjct: 143 YLSLHAKTIAVAGTHGKTTTSSMIATM---LDHMGDDPSFLIGGIVEEYKTNGRSGKSDY 199

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S           + PH+AVIT I   HL ++   + +    A   + +   GT
Sbjct: 200 FVCEADES-----DGSFMYLNPHVAVITNIEADHLDHYKTFDNLTRTFAAFMDLVGSDGT 254

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           + +  D+     L         + + ++G     D+           +           E
Sbjct: 255 VVICGDNPTCRALAQA----SSRHVVTYGFDATCDYVCTLGANTHTITNSFQVRCPSGEE 310

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +           N L     ++   A       A       +G  +R+           +
Sbjct: 311 LAITLTANPGTHNALNATAAIAAAGALGLDVYAAAKALCTFKGAHRRFTHMGTWND-ICV 369

Query: 343 DESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            + Y  +P  +K             ++    PH   R  A++ +  +    +    +   
Sbjct: 370 VDDYGHHPTEIKATLAAAKNLQFKRIVCVFQPHRYTRTQALMNEFADAFVDADVVIVTDV 429

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                  I  V  +G HV  L      S           +   +   L  GD++
Sbjct: 430 FSAGETPIPGV--TGQHVAQLIAKRHPSCITESIPQKKAVVNRLIELLQPGDLL 481


>gi|290969172|ref|ZP_06560697.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780678|gb|EFD93281.1| UDP-N-acetylmuramate--L-alanine ligase [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 464

 Score = 51.8 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 116/398 (29%), Gaps = 39/398 (9%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  V+V+T +              +P+    D   AL  +            IA+ G+ G
Sbjct: 69  AETVIVSTAIHPDNAEWQAARERHLPILHRSD---ALVHIMSW------GKAIAVAGAHG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML       +     +          L          + I E   S        
Sbjct: 120 KTTTSSMLGQVFIEGRLHPTIVIGGEVDY---LHSNSTLGTGPYVIAEADES-----DGT 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P IAV+T I   H+ ++  +  + +A  +  + L+            F      +
Sbjct: 172 FLKEHPAIAVVTNIDADHMDHYGSMAHVIAAFKQFIQRLDPQD---GMAVLCFDNEHIRR 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             +   +T  S+G +++A++  +       + + +V  +   +  V   +         +
Sbjct: 229 LASQVGRTYISYGFAEDAEYTAKNLYYKEGKHYFDVYRRQVLLGTVCLQVPGRHNVLNAL 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM----- 353
               VS+        I A         R  + +  +           +     +      
Sbjct: 289 ATIAVSLHCGLPFAEIAAALCRFHGAKRRFQTKGYVGTIRVVDDYAHHPTEIKATLAAAG 348

Query: 354 -KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                 V+    PH   R   +L         +   + D+  V  +Y      + G    
Sbjct: 349 DMGTHRVVCLFQPHRYSRTQLLLEQFG-----TAFSNADILVVTDIYGADEDPVPGVTGR 403

Query: 413 ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + D +         Y    + +  F+Q      D+++
Sbjct: 404 LIVDKIKEKTGKSAVYIPRKEDILPFLQKEARPHDLIL 441


>gi|238761557|ref|ZP_04622532.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
 gi|238700071|gb|EEP92813.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia kristensenii ATCC
           33638]
          Length = 495

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/411 (17%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 83  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 134 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 189 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 246 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + D  ++AL  F     R              +    ++ + Y  +P 
Sbjct: 302 AAAVAVATEEGIEDDDILRALIGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A +      +   + R + V          ++  + D A VLS  ++     V+ +G
Sbjct: 362 EVDATVKAAR--AGWPDKRIVMVFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 417

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +        D +   +   L   D+++V+ 
Sbjct: 418 ESPIPGADSRSLCRTIRNRGKLDPILVSDSDTVPEVLAQVLNGDDLILVQG 468


>gi|254475825|ref|ZP_05089211.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
 gi|214030068|gb|EEB70903.1| UDP-N-acetylmuramate--alanine ligase [Ruegeria sp. R11]
          Length = 465

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 74/441 (16%), Positives = 136/441 (30%), Gaps = 45/441 (10%)

Query: 19  IGIVPQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
           +        + I+  SR      + F   +  +      +  A    A +V+ +     +
Sbjct: 37  VVQGSDLKASKIT--SRLEKLGAQIFVGQRAEN------LEDA----AVVVISSAIKPGN 84

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
                    G+  V  A   LA   RL+S    IAI G+ GKTTT  M+   + +    +
Sbjct: 85  PELDEARNRGLPVVRRA-EMLAELMRLKSN---IAIAGTHGKTTTTTMMAELMVA---GH 137

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                 N  I             ++ + E   S         + +   IAV+T I P H+
Sbjct: 138 FDPTIVNGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNRLPATIAVVTNIDPEHM 192

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
            ++   + + +   E    +   G      D    + L  +     + T     ++    
Sbjct: 193 EHWGDFDTLRNGFYEFVSNIPFYGIAVCCTDHPEVQALVGRITDRRVVTYGFNTQADVRA 252

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             L      +                     G H   N L  + +   L  +      AL
Sbjct: 253 VNLTYKAGVAHFDIQLQAEDRVIEGCTLPMPGDHNVSNALSAVAVARHLGMNSSEIRAAL 312

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK---------AAISVLSQISPHGE 368
           + F     R       + +     I + Y  +P  +              V++   PH  
Sbjct: 313 AAFGGVNRRFT----KVGEVDGVTIIDDYGHHPVEIAAVLKAARQACDGRVIAVHQPHRY 368

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
            R  ++  D    G  +++  + +AEV +      +  +G     L   L R  H H   
Sbjct: 369 SRLSSLFDDF--CGCFNEADVVAIAEVFA-AGEDPIEGAGRD--DLVAGLIRHGHRHARA 423

Query: 429 TMDG--LFLFIQSSLVDGDVV 447
            +D   L   ++     GD+V
Sbjct: 424 LLDEPDLERLVREQARPGDMV 444


>gi|254449007|ref|ZP_05062461.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
 gi|198261401|gb|EDY85692.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           HTCC5015]
          Length = 468

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 147/440 (33%), Gaps = 58/440 (13%)

Query: 31  SIDSRSIA-PQE-AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL------S 82
           S ++R +       F         GH      ++    ++VV+T +      +       
Sbjct: 39  SANTRRLESAGARIFI--------GHS--AAHIEN-VDVIVVSTAVGEDNPEVVAAREAR 87

Query: 83  IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS 142
           IPV         +  LA   R R     IA+ G+ GKTTT  +    L+        +  
Sbjct: 88  IPVV----PRAEM--LAELMRFRQG---IAVAGTHGKTTTTSLTASLLAEGGLDPTFVIG 138

Query: 143 YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS- 201
              +              D+ + E   S          +++P ++V+T I P HL+ +  
Sbjct: 139 GKLNS---AGTNARLGSGDYLVAEADES-----DASFLILQPVMSVVTNIEPDHLATYGG 190

Query: 202 GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR 261
             E++     E    L   G   +  DD     +  +          ++G  + AD Q  
Sbjct: 191 SFEKLKDTFVEFLHHLPFYGLAVMCVDDPVVREILPRV----TCQTLTYGIQEGADIQAI 246

Query: 262 KWKQCSEQSWMEVQLQGKSMEV--VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
             +     S  +V L           +  G H  QN L  L I   L    D+   AL  
Sbjct: 247 NLRFEGATSVFDVALPNGKRLDGITLNMPGEHNVQNALAALAIAHELGVSGDSISSALQS 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R +             + + Y  +P+ M A +       P        V+    
Sbjct: 307 FGGIGRRFQLLGDIQCGNGSVTLVDDYGHHPSEMSATLRAARNAWPDR----RLVVAFQP 362

Query: 380 EMGELSQSFHIDLAEVLSLYN---ISHVWLSGF------HVLALKDALPRSIHVH--YSE 428
                +Q    D A VLS  +   ++ V+ +G          +L  A+     V+  + E
Sbjct: 363 HRYSRTQDLFEDFASVLSAADALCLTEVYAAGEPAVPGADGRSLAAAVRARGQVNPVFVE 422

Query: 429 TMDGLFLFIQSSLVDGDVVV 448
           +++ L   +Q  L +GDV++
Sbjct: 423 SVEALPEVLQGVLEEGDVLL 442


>gi|89902196|ref|YP_524667.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodoferax
           ferrireducens T118]
 gi|118595682|sp|Q21SW7|MURD_RHOFD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|89346933|gb|ABD71136.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodoferax
           ferrireducens T118]
          Length = 506

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 118/427 (27%), Gaps = 47/427 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSI------PVFGVDDVL------------GALN 96
            FI  A       +VV TD+ A   S  +       V    + +             AL 
Sbjct: 55  QFISGAFD---AALVVGTDVRAVFKSPGLSPLDVATVIEAANTIGIRATGELGLFSQALA 111

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPLTLAR 155
            L   A       ++A+TG+ GKTT   +  + +    K+ A  G+     +   +    
Sbjct: 112 DL--KATQNYTPKVLAVTGTNGKTTVTALTGLLVERGGKSVAVAGNIGPTLLDTLIQHLA 169

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI--ASAKAEI 213
                +  + EL    L           P  A +  I   HL     +     A A    
Sbjct: 170 AGTLPEVWVIELSSFQL----EGETGFEPSAAAVLNITQDHLDWHGSMAAYVAAKAHVFG 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
             GL               E ++ K     ++   +FG            +Q +   W+ 
Sbjct: 226 ATGLMILNREDPQVMAMLPEPVRVKLQRPQLRAHVTFGADLPRRPGDFGLEQVNGMLWLV 285

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG-------- 325
             L+         G    +    LM    + I          A        G        
Sbjct: 286 RALEADETLKNRKGETPELFLQRLMPADALRIRGRHNAVNALAALALAQAAGCALGPMLY 345

Query: 326 --RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
             R  R             +  +  +        +V +      E + I +LG   + G+
Sbjct: 346 GLRDYRGEPHRVAPIGIFNEVEFFDDSKGTNVGATVAALAGLGSERKVIVILGGEGK-GQ 404

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
                   ++          V L G     L+ AL    + +  +E+M        +   
Sbjct: 405 DFAPLVDPVSRYARA-----VVLIGRDAPLLRAALQATHVPLLEAESMAQAVALANAQAH 459

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 460 AGDAVLL 466


>gi|312621430|ref|YP_004023043.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201897|gb|ADQ45224.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 455

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 103/364 (28%), Gaps = 32/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMRNFKN-----VIAIAGTHGKTTTTSMIGYILKKANYN---PTILVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    D+ + E       E        +P I VI  I   HL  F  I+ I  +  +
Sbjct: 144 GNFVIGSKDYLVVEAC-----EYVDSFLKFKPTIGVILNIDNDHLDYFKDIDSIKESFRK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +  +G I  N DD   + + +K H   +           AD          +  + 
Sbjct: 199 FAMKIPSSGFIVANCDDKNVKDVISKLHTQVVCISTKEKADIFADNISYN-----DGYYE 253

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                  +  + H  +      N+   L   ++ +     +           G  +R   
Sbjct: 254 FDVKNKNNEILAHIKLNIPGFHNVYNALAAFAVASKLRIESFTIEQTLSEFCGASRRLEK 313

Query: 333 ALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                   L D+  +               +   VL+   PH   R   +L +  E  +L
Sbjct: 314 VGEFNGIYLYDDYAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLKL 373

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVD 443
           +    +         N+      G     L   L    I   Y    + +  ++      
Sbjct: 374 ADKVIVTDVYAAREKNV-----FGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKK 428

Query: 444 GDVV 447
           GD++
Sbjct: 429 GDII 432


>gi|308188236|ref|YP_003932367.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
 gi|308058746|gb|ADO10918.1| UDP-N-acetylmuramate-alanine ligase [Pantoea vagans C9-1]
          Length = 454

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 122/369 (33%), Gaps = 36/369 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       I       GVP             F + E 
Sbjct: 109 VLAVAGTHGKTTTAGMAAWILEACGLEPGFIIG-----GVPGNFDVSAKLGKSPFFVIEA 163

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  +  I      +   +   G I L
Sbjct: 164 DEYDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILL 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
              D   + + A          +S  +S     + +  K  ++ S  E+     K  EV 
Sbjct: 224 PEHDPNLKQVMA-------MGCWSEQESVGEHGRWQAKKLTNDASHWEIWLDGEKVGEVK 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +    + A +AL+ F     R +      N   +    +
Sbjct: 277 WALVGEHNMHNGLMAIAAARHVGVKPEDAGQALNTFINARRRLELRGEVNNIKVY----D 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNI 401
            +  +P ++   ++ L+ +     GR   +   + E    +        DLA  L+    
Sbjct: 333 DFAHHPTAI---LATLAALRSKVGGRARIL--AVLEPRSNTMKMGVSKNDLAPSLARA-- 385

Query: 402 SHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V+L   H     + D     I   H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 386 DEVFLFQPHHIPWQVSDVAEACIPPAHWSADIDTLVEMVAKAAQPGDTILV-MSNG-GFG 443

Query: 459 RLINLLLEE 467
            +   LL+ 
Sbjct: 444 GIHQKLLDR 452


>gi|295109206|emb|CBL23159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus obeum
           A2-162]
          Length = 451

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 81/307 (26%), Gaps = 28/307 (9%)

Query: 146 HIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T   +   D    + E+    L  I        P ++ I  I   HL+    +E
Sbjct: 143 NIGTPYTSKALEMQDNTTTVAEISSFQLETIEEFA----PKVSAILNITEDHLNRHHTME 198

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  I +         LNY+D              +          ++  +L +  
Sbjct: 199 EYIRVKELIVKNQTADDFCILNYEDPVLREFGRNITPKVVY--------FSSVRRLEEGI 250

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  +    + +   V    +      N    +   ++                   
Sbjct: 251 YLDGDQIILKTSEEEIPLVRTGELKLLGQHNFENVMAASAMAYYAGVPVESIRKSICEFT 310

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +      ++S   NP +    I  +++ +    G            G  
Sbjct: 311 AVEHRIEYVTEKNGVVYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYD 358

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLV 442
             S + +         + ++ L G     +K A  R         E ++           
Sbjct: 359 KGSGYDEWLN-AFDGKVRYLVLIGQTRDKIKAAAERLGVCPCILCENLEEAVKVCAEKAN 417

Query: 443 DGDVVVV 449
            GD V++
Sbjct: 418 PGDAVLL 424


>gi|225549420|ref|ZP_03770392.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
 gi|225370048|gb|EEG99489.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 94a]
          Length = 468

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 130/382 (34%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I+GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGISGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|170728854|ref|YP_001762880.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           woodyi ATCC 51908]
 gi|169814201|gb|ACA88785.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella woodyi
           ATCC 51908]
          Length = 442

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 120/381 (31%), Gaps = 48/381 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + V+T  + +   + I V G  DV     +L   A    +  +I ITGS GK+T   ++ 
Sbjct: 76  IAVDTPEIRAAIDMGIEVIG--DV-----ELFARAVKDREPCVIGITGSNGKSTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                    Y    +   +IGVP     +    D  I EL    L      TH +   +A
Sbjct: 129 EMARVAGLNY----AVGGNIGVPALDL-LREPRDLYILELSSFQL----ETTHSLNCIVA 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               I+  H+  ++ +E    AK  ++   ++      +      + +            
Sbjct: 180 TCLNISEDHMDRYTDLEAYRQAKLSLYCQSKRALFNREDELTEPKDPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG S   + +                + G +  +    +    + N    L  +++  
Sbjct: 230 NSFGLSAPFNDEW--------GVRDGKVVHGTTEIMNLLDVALVGSHNHANLLAAMALAY 281

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
                    + V     G   R          + +++S   N  +    ++ L   S H 
Sbjct: 282 HAGVDKESMIQVATTFTGLAHRCELVAVHNGVSYVNDSKATNVGAT---VAALEGFSDHL 338

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  +   GD    G   Q     +      + +S +   G     + +   ++I V   
Sbjct: 339 GGIILIAGGDGK--GADFQPLQQAI------HGLSQLITLGKDGDKIAEFSEKAIRV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVV 448
             M             GD+V+
Sbjct: 388 SDMSEAVKTANELAEAGDIVL 408


>gi|237739354|ref|ZP_04569835.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
 gi|229422962|gb|EEO38009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           2_1_31]
          Length = 432

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 134/404 (33%), Gaps = 68/404 (16%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATII 111
           +DF+    ++G                       V D +    ++A         K  II
Sbjct: 60  NDFVKEVQKRG---------------------IKVLDEI----EVAYNYMVEKNLKTKII 94

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT   ++  L+         G+    +   L   +   D+DF   EL    
Sbjct: 95  AITGTNGKSTTTAKISDLLNHAGYKACYAGNIGRSLSEALLHEK---DLDFVSLELSSFQ 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L  +       RP+I++I  + P H+  +   +E    K  I +   +      N DD  
Sbjct: 152 LENVE----NFRPYISMIINMGPDHIERYKSFDEYYDTKFNIAKNQNENQYFIENIDDVE 207

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E    +  A  I    S           ++     E + + V              G H
Sbjct: 208 IEKRAKQIKAKRISVSKS-----------KEANVYVEDNKIYVGKDFIIEADKLSLKGIH 256

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  +    IL  D +   + L V  P E R        N G    I++S   N  
Sbjct: 257 NLENTLFMVATAEILNIDREKLKEFLMVATPLEHRT---ELFFNYGKVKFINDSKATNVD 313

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S K AI           G    V                 LAE++   NI  V+L G   
Sbjct: 314 STKFAIQANKDSILICGGYDKGV-------------DLAPLAEMIKE-NIKEVYLIGVIA 359

Query: 412 LALKDALPR----SIHVHYSETMD-GLFLFIQSSLVDGD-VVVV 449
             ++  L +    +  +H  ET++  L    +    D D V+++
Sbjct: 360 DKIETELKKVGYEASKIHKLETIENSLLDMKKRFTKDSDEVILL 403


>gi|84490005|ref|YP_448237.1| UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera stadtmanae
           DSM 3091]
 gi|84373324|gb|ABC57594.1| predicted UDP-N-acetylmuramyl tripeptide synthase [Methanosphaera
           stadtmanae DSM 3091]
          Length = 489

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 139/440 (31%), Gaps = 56/440 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASI---GSLSIPVFGVDD----VLGALNKLAVAARLRSKAT 109
           I  A +KG   ++       +I    +L+  +   +        ALN +         + 
Sbjct: 52  IEIANEKGVSCLITQNPHDDAISMAKALNFSLIVTEHIEYATAFALNTIVKEYAE--DSF 109

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---PLTLARM----PVDVDF 162
            +A+TG+ GK+TT  +L    S             +       P   + +      + + 
Sbjct: 110 KVAVTGTNGKSTTTHLLYTIFSDFNYDTYTNTDAESEGNTLIDPRVASELSDYYHKNNNI 169

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAV---------ITTIAPAHLSNFSGIEEIASAKAEI 213
            +  L +S +            +  +         IT  +  H++     + +    +  
Sbjct: 170 DVITLEVSEVQGWDDEIMKNHSNKMIRALDADSVIITNASMDHINLVKSFDNLLYEISGA 229

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + L       L   +   E ++  ++ +  ++  +     N D          E   + 
Sbjct: 230 AKALLNGDKESLLVLNYEDENIRNMANIVSNQSNINVMFFGNYDENNILSVSYKEGVGIY 289

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +    +        H  Q+++  L +      D    I++L  + P   R  + R  
Sbjct: 290 SGNELYVEQKDLPFNSIHFIQDIMAALAVCIYRNMDRGRVIESLKNYKPLARRFIKLREN 349

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                  +I + +  NP+ +   I   S++     G  + ++  +   G      + ++A
Sbjct: 350 P------IIIDDFAHNPSGINLTIENGSKL-----GNNLFIVNAIR--GSRGDDINREIA 396

Query: 394 EVLSLY----------------NISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
           E L                    ++H+         +   +    ++H+   E+++   L
Sbjct: 397 EALVKSLKDRDNYTLLLTCSVDVVNHLNTVVDSEKNIFLEILEENNIHFMLFESLEESLL 456

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
            + +   D DV+++  +   
Sbjct: 457 NVVNLASDDDVILLLGAQGM 476


>gi|260655412|ref|ZP_05860900.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
 gi|260629860|gb|EEX48054.1| UDP-N-acetylmuramate--alanine ligase [Jonquetella anthropi E3_33
           E1]
          Length = 461

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 65/353 (18%), Positives = 116/353 (32%), Gaps = 32/353 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M+++                      +       + +  + EL  S
Sbjct: 100 VGVAGTHGKTTTTSMISLIAERAGLEPTVAIGGELCD---IGCNAKLGNGNVMVAELDES 156

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                       +P +AV+T +   H++ +   + +  A       +   G   L  DD 
Sbjct: 157 -----DGSFQFFQPSVAVVTNVDWDHVNYYPSRQSVVDAFVSFLANVPSDGFEVLCGDDP 211

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI 288
               L  +      +   ++G  K  DF     +Q      S+   +   +   V     
Sbjct: 212 GVRALLGRLEGQNCQNRVTYGLEKGNDFYPTNLEQYPGGGMSYTLNRFGRQVGRVRLTVS 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  L   S L    D  + AL+ FH  + R    +   N G   L+ + Y  
Sbjct: 272 GTHNLLNSLAALAAGSRLGISFDLMVSALNEFHGVKRRL---QQKGNAGDDILVYDDYGH 328

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           +P  +KA ++ L Q+ P        V+         + + +   A+VLS      V L  
Sbjct: 329 HPNELKATLTALGQMFPKR----RLVVVFQPHRYTRTAALYEQFAQVLSQA--DQVILLP 382

Query: 408 ----------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                     G     ++D +        H           + S L  GD+++
Sbjct: 383 IYAADEQQIPGVSSSLIQDKIHERHPGLCHLVRDKVDAEACVMSVLQPGDLLL 435


>gi|148980586|ref|ZP_01816133.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
 gi|145961169|gb|EDK26485.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrionales
           bacterium SWAT-3]
          Length = 438

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 128/369 (34%), Gaps = 51/369 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +             +IG+P           + + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNV----GVGGNIGIPALDLLELDADLY-VLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF   + T     +
Sbjct: 162 LSSFQL----ETTSNLKLAAAAFLNLSEDHMDRYQGMTDYREAKLRIFNNAQCTIVNRED 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                      +++      + +FG     D Q           W+    +         
Sbjct: 218 ----------KETYPDQTMPLVTFGL----DNQEFGVSTIGGCEWLVDNGKPVLTTQDLT 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L++L ++  +  D + +++AL  ++    R    +   ++     +++S 
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYNKSLEALKAYNGLTHRC---QVVADKREIKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       +G    ++G + +  + S     +L  VL+      +  
Sbjct: 321 ATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELEPVLAQLERVQLCC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        +TM  +   I   LV GD+V++    +S           
Sbjct: 371 FGEDADQF---MPLHPSAQKFDTMQQIIESISPQLVAGDMVMLSPACASFDQFNNFMARG 427

Query: 455 CGFYRLINL 463
             F  L + 
Sbjct: 428 DAFTELAHE 436


>gi|86516401|gb|ABC97872.1| MurD [Shigella boydii]
 gi|86516404|gb|ABC97874.1| MurD [Shigella boydii]
 gi|86516407|gb|ABC97876.1| MurD [Shigella boydii]
 gi|86516410|gb|ABC97878.1| MurD [Shigella dysenteriae]
 gi|86516413|gb|ABC97880.1| MurD [Shigella boydii]
 gi|86516416|gb|ABC97882.1| MurD [Shigella boydii]
 gi|86516419|gb|ABC97884.1| MurD [Shigella boydii]
 gi|86516422|gb|ABC97886.1| MurD [Shigella boydii]
 gi|86516443|gb|ABC97900.1| MurD [Shigella boydii]
 gi|86516446|gb|ABC97902.1| MurD [Shigella flexneri]
 gi|86516455|gb|ABC97908.1| MurD [Shigella dysenteriae]
 gi|86516518|gb|ABC97950.1| MurD [Escherichia coli]
 gi|86516521|gb|ABC97952.1| MurD [Escherichia coli]
          Length = 154

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 25/150 (16%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L     H +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LA  L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LARYLNGDNV-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV---KSS---------NSCGFYRLINLL 464
           V++    +S             F RL   L
Sbjct: 124 VLLSPACASLDQFKNFEQRGNEFARLAKEL 153


>gi|330501925|ref|YP_004378794.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
 gi|328916211|gb|AEB57042.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina
           NK-01]
          Length = 480

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/396 (18%), Positives = 132/396 (33%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 85  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 135

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L    ++       +     +               F I E   S    +      ++P 
Sbjct: 136 LASVFAAGGLDPTFVIGGRLN---AAGTNAQLGSSRFLIAEADESDASFLH-----LQPM 187

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           ++V+T I   H+S +     ++     E    L   G   L  DD     L  +     +
Sbjct: 188 VSVVTNIDADHMSTYGGDFNKLKKTFIEFLHNLPFYGLAVLCVDDPVVRELLPQVGRPTV 247

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIV 303
               ++G S++AD +    +Q   +++  V        +V  +  G H   N L T  I 
Sbjct: 248 ----TYGFSEDADVRAINVRQEGMRTYFTVLRPDCEPLDVSVNMPGNHNVLNALATTAIA 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    D    +  LS F     R + Y      G   ++ + Y  +P  + A I  +   
Sbjct: 304 TDEGIDDAAIVSGLSGFQGVGRRFQVYGELPVDGGSVMLVDDYGHHPREVAAVIKAVRGG 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLAL 414
            P        V+         ++  + D  +VL   N+  +            G     +
Sbjct: 364 WPER----RLVMVYQPHRYSRTRDLYDDFVQVLGEANVLLLVEVYPAGEEPIPGADSRQM 419

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 420 CHSIRQRGQLDPIYVERGADLAPLLKPLLRAGDILL 455


>gi|182420067|ref|ZP_02951301.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237669521|ref|ZP_04529501.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376104|gb|EDT73691.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum 5521]
 gi|237654965|gb|EEP52525.1| UDP-N-acetylmuramate--alanine ligase [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 461

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/367 (14%), Positives = 118/367 (32%), Gaps = 36/367 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +    +       +A++G+ GKTT   ML+    +       +      +     
Sbjct: 102 EFLGHIMKGHKYN-----VAVSGTHGKTTCTSMLSHVTLAANLDPTILVGGELDV----- 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I EIA     
Sbjct: 152 ---IGGNFRIGNSEYFLTEACEYKKSFLKFPPYVGIILNIDADHLDCYKDINEIADTFMA 208

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
             + + K G +    DD   + + +           S+G + ++D   +          S
Sbjct: 209 FSKLIPKDGYLVGYGDDERVKEILSN----AECNTVSYGFNDDSDVTAKNITFNKMGCAS 264

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +   +   K   +  +  G H   N L ++ +  I        ++ LS       R +  
Sbjct: 265 FDVYKSDKKLFSLTLNVPGKHNVLNALASICVSLIFNIADKDTVEGLSKCKGAHKRFEY- 323

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEM 381
                +     + + Y  +P  +KA ++               PH   R   +  +    
Sbjct: 324 ---KGELNGVTVIDDYAHHPTEIKATLNTAQKIDHNKVYCVFQPHTYTRTKTLFDEFTHC 380

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                   I +    +    + +  S     A++      ++     + D    +++S L
Sbjct: 381 FNECDEL-ILMDIYAAREKDTGLVSSEELGNAIR---STGVNCTNVHSHDEALEYVKSKL 436

Query: 442 VDGDVVV 448
            DGD+++
Sbjct: 437 GDGDLLL 443


>gi|291616270|ref|YP_003519012.1| MurD [Pantoea ananatis LMG 20103]
 gi|291151300|gb|ADD75884.1| MurD [Pantoea ananatis LMG 20103]
          Length = 438

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 69/380 (18%), Positives = 125/380 (32%), Gaps = 53/380 (13%)

Query: 86  FGVDDVLGALNKLAVA---------------ARLRSKATIIAITGSVGKTTTKEMLTIAL 130
             V     AL   A+                    ++A+I+AITGS GK+T   ++    
Sbjct: 68  LIVASPGIALAHPALCEAADAGIEIVGDIELFCREAQASIVAITGSNGKSTVTTLVGEMA 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +             +IG+P     +       + EL    L      TH ++   A I 
Sbjct: 128 KAAGWQV----GVGGNIGLPALSL-LKAPAQLYVLELSSFQL----ETTHSLKAAAATIL 178

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            +   H+  +  G+++  +AK  I+E  +       +          A+  + GI     
Sbjct: 179 NVTEDHMDRYPLGMQQYRAAKLRIYENAQVCVVNADDGMTMPVRGADARCVSFGI----- 233

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D       +     W+  + +          +G H   N L  L +   +   
Sbjct: 234 -------DIGDYHLNKQQGSIWLRAKGEKVLNTDEMTLVGQHNYTNALAALALADAVGLP 286

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
             T++ AL+ +     R    +          I++S   N  S +AA+  L        G
Sbjct: 287 RSTSLSALAAYSGLPHRF---QLVHQSRGVRWINDSKATNVGSTEAALKGLQV-----NG 338

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
               +LG   +  + S      LA  L    I  ++  G    AL  AL   + V  ++T
Sbjct: 339 TLWLLLGGDGKSADFSP-----LATYLQGDRI-RLYCFGRDGDALA-ALRPDVAVR-TDT 390

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +      I   +   D+V++
Sbjct: 391 LQQAMEQIARQVQPDDMVLL 410


>gi|194290815|ref|YP_002006722.1| udp-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224650|emb|CAQ70661.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 519

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 85/314 (27%), Gaps = 46/314 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L      TH + PH A +  +   HL     +E  A++KA IF      
Sbjct: 192 EVWVLELSSFQL----ETTHTLAPHAATVLNVTQDHLDWHGSMEAYAASKARIFGPAGHA 247

Query: 221 GTIFLNYDDSFFELLK-----------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
               LN +D     +                  G   I   G                E 
Sbjct: 248 CVQVLNRNDRLTLDMARPGSTPVTFGIDLPEVPGSFGILREGGMPWLVLAEPDPDAEGEG 307

Query: 270 SWM------------EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                           V+ +        H  G H A N +  L +   +   ++  +  L
Sbjct: 308 KPRGRKAAEAVQEAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPMNALLHGL 367

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             +        R             D+S   N  +          ++      +  VL  
Sbjct: 368 REYRG---EPHRVEWVATIDDVEYFDDSKGTNVGAT---------VAALSGLDKRVVLIA 415

Query: 378 MCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFL 435
             E  G+        +A+         V L G     L+DAL  S      + T++    
Sbjct: 416 GGEGKGQDFSPLAAPVAQYARA-----VVLIGRAAAELRDALQGSGATLVDAATLEEAVT 470

Query: 436 FIQSSLVDGDVVVV 449
                   GD V++
Sbjct: 471 QAAGLAEAGDAVLL 484


>gi|167586022|ref|ZP_02378410.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ubonensis Bu]
          Length = 465

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 88/410 (21%), Positives = 144/410 (35%), Gaps = 38/410 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGDLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G+    VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGREPLPVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY      G  +    + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPAAGGGSYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVW 405
           +P  M A I+      P        VL         ++    D   +   +    ++ V+
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLSTVDALVLTEVY 392

Query: 406 LSGFHV------LALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            +G          AL  AL  +  V   +   +D +   +     +GDVV
Sbjct: 393 AAGEAAITTANGDALSRALRAAGKVEPVFVAAIDDVPDALTKVAQNGDVV 442


>gi|295394740|ref|ZP_06804955.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294972336|gb|EFG48196.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 452

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 131/416 (31%), Gaps = 55/416 (13%)

Query: 53  GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARL 104
           GHD   +      GA  VVV++ +  +   +       IPV    D L  L +       
Sbjct: 52  GHDGSHVE-----GADTVVVSSAIRHTNPEIVRAEELGIPVIHRSDALATLME------- 99

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFG 163
                 IAI G+ GKTTT  M T+AL +  K  +          +  T         D  
Sbjct: 100 --GKRTIAIAGTHGKTTTTSMTTVALQAAGKDPSFAIGGQ----LSKTGTNAHAGSGDVF 153

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I E   S    +++     RP + VIT     HL ++   E +  A  E    +   G  
Sbjct: 154 IAEADESDGSFLKY-----RPEVGVITNAEADHLDHYGSWERVREAFVEFGSHVGNMGGT 208

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +   D        +        +  +G+S  AD ++       +   + +  +G+    
Sbjct: 209 LIVCADDKGAASIGREAREQGTNVILYGESDIADARV-NASTHGQGVSVSIAFEGQEYAF 267

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G + A N          +  D    I+ L  F     R +          +    
Sbjct: 268 DIALPGTYNALNATAAFLSARAVGGDPQGIIQGLESFTGTRRRFELRGIEKGVRVY---- 323

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +P  + A ++   ++        +        +   +++F+ + A  LSL     
Sbjct: 324 DDYAHHPTEVTALLTAAKKVVDPSNKVHVIF---QPHLFTRTKNFYREFARALSLA--DD 378

Query: 404 VWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V +            G     +   +     V Y          +   +  GD+V+
Sbjct: 379 VIVLDVFPAREDPIPGVTGELIAREVTS--DVTYVPAFSDAVPTVVERVKPGDIVL 432


>gi|194468379|ref|ZP_03074365.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
 gi|194453232|gb|EDX42130.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Lactobacillus
           reuteri 100-23]
          Length = 456

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 120/410 (29%), Gaps = 47/410 (11%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           VVV    +     L          +    +L           ++++TGS GKTTT   LT
Sbjct: 75  VVVKNPGIPYDNPLVAAFVKQGTPIITEAELGWQI---FDGHLVSVTGSNGKTTTTT-LT 130

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             + +    +    + N  I        +  D D  + EL    L         + PHIA
Sbjct: 131 QLMIAENAKHQVKYAGNIGISFSKIAEDLGPD-DTLVTELSSFQLLGA----PTIHPHIA 185

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           +IT I   HL      E   +AK  I     K   + +N+D   ++ +  +S A      
Sbjct: 186 IITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWDRDEWQKIAQRSQAT----- 240

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
                   +           E   +  + Q          IG    +N L  +    +  
Sbjct: 241 ----IVPFSRLNKSHDGSYVEDGMIYWRGQEVMPTKDIRLIGPQNVENALAAIAAAKLSG 296

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
              D   K L+ F     R    +  +        ++S + +  + + A+   ++     
Sbjct: 297 VTNDAIKKVLTTFSGVRHRL---QYVMEYQERLFYNDSKSTDIEATEVALQGFNRPVILL 353

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHY 426
            G            G         L       ++  + + G     +KD      + V  
Sbjct: 354 AG------------GLDRGYTFERLVPYFKK-HVKAMIVFGECKDKMKDVGNQAGVPVVE 400

Query: 427 SETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           SE               GDV+++    +S             F   +  L
Sbjct: 401 SENAITAVPEAWKLSEPGDVILLSPANASWDQFPSFEVRGDKFIEAVEEL 450


>gi|257063610|ref|YP_003143282.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
 gi|256791263|gb|ACV21933.1| UDP-N-acetylmuramate--alanine ligase [Slackia heliotrinireducens
           DSM 20476]
          Length = 464

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 116/385 (30%), Gaps = 31/385 (8%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           LA   R       +A  G+ GKTTT  ML  A+ ++      +                 
Sbjct: 99  LAELGR---GLKTLAAAGTHGKTTTSSMLATAIDALGLDPTFVVGGMVD---AYKTNAKS 152

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEG 216
              ++ + E   S           + P++A++T + P HL ++  GI+EI    A+    
Sbjct: 153 GTGEYYVVEADES-----DGSFLNLSPYVALVTNVEPDHLDHYTGGIDEIRDTFAKFMSS 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G   +  DD     +         K +Y++G  +  D  +  +      S      
Sbjct: 208 VPDEGACVVFGDDPELVRIARA----SAKRVYTYGLGEGNDIVVSGYS-TKGISSTFDLS 262

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 V           N L   GI+ ++ A       A        G  +R+      
Sbjct: 263 MPDGSNVTCTLKKNPGLHNALNAAGILGVVFALGLDVAAAAEGIADYTGVRRRFDLVGEA 322

Query: 337 GFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
              T++D+  +         + A+      V +   PH   R  ++  +  +    +   
Sbjct: 323 AGVTVVDDYAHHPTEIKATLSAAAGLDFKRVFALFQPHRYSRTASLTDEFGKAFADADVL 382

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            I          I  V  SG  +    +A      V Y    D     +   L  GD ++
Sbjct: 383 RIMDVYPAGEAPIEGV--SGKLIADAVEAFGAPTDVAYLPDKDEAAARVLEELQPGD-IL 439

Query: 449 VKSSNS--CGFY-RLINLLLEEFPA 470
                         ++  L     A
Sbjct: 440 FTMGAGDVTKLGPAIVEELKRREEA 464


>gi|223889325|ref|ZP_03623912.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
 gi|223885246|gb|EEF56349.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 64b]
          Length = 468

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGRSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNREDFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|312880217|ref|ZP_07740017.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
 gi|310783508|gb|EFQ23906.1| UDP-N-acetylmuramate/alanine ligase [Aminomonas paucivorans DSM
           12260]
          Length = 485

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 130/416 (31%), Gaps = 46/416 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
               + +     IPV        A  L+ L    R       I + G+ GKTTT  M+ +
Sbjct: 86  EHPEIRAARERGIPV-----ARRAEVLSDLFNRRRG------IGVAGTHGKTTTSSMIAL 134

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
              +   +            +   L  +  +   G  E  ++ L E      L  P IAV
Sbjct: 135 IAENAGISPTVA--------LGGELCDIGCNAKLGSGETMVAELDESDGSFELFSPEIAV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG--IKT 246
           +T I   H+ ++   E +  A      G +  G++ L  +D+    L  + H  G   +T
Sbjct: 187 VTNIDWDHVDHYPTYESVGDAFHRFALGKKPAGSLVLCAEDAGTRRLAERLHEDGLASET 246

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +Y++G   +  +               +     +               +       +  
Sbjct: 247 LYTYGWGTSWTWGATDVTPLPGGGIRCLVHFRGTPLGTLSLRVSGEHNVLNALAACAACS 306

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
              +   +   ++   K  + +  R    +G      + Y  +P  + A +  L    PH
Sbjct: 307 IVGIPFEVSCRALSTFKGAKRRLQRVGAAEGVEVY--DDYGHHPREIHATLRALRGAFPH 364

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALK 415
               R+ VL         + +   + A VL       V L            G     + 
Sbjct: 365 R---RLLVLFQPHRF-TRTAAMFREFATVL--TGADRVLLLPVYGADETPIPGVGSHLIA 418

Query: 416 DALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVV-VKSSNSCGF-YRLINLLLEE 467
           +A P+          +       +     D DVV+ V + N C    R+++ L  E
Sbjct: 419 EAFPKEGPTRLDLCGSFSEAVEVVLRERRDQDVVLTVGAGNVCLLGERILDSLKRE 474


>gi|260775368|ref|ZP_05884265.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608549|gb|EEX34714.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 441

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 115/345 (33%), Gaps = 38/345 (11%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    ++AITGS GK+T  ++  +  ++         +   +IGVP     +  D +  +
Sbjct: 107 QVDKPVVAITGSNGKSTVTDLTGVVANAAGV----KTAIGGNIGVPALEL-LDQDAELYV 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  +    A    ++  H+  +  +E    AK  IFE  +      
Sbjct: 162 LELSSFQL----ETTSSLSLKAAAFLNLSEDHMDRYDDMEGYRQAKLRIFEQAQTCIVN- 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                               K      +           K    + ++  Q         
Sbjct: 217 -----------ADDPATYPDKKDAPLVEFSLEKSCEFHVKVVEGREYLCHQDAKILASDE 265

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L ++     D+   I AL  ++    R    +   +      +++
Sbjct: 266 LSLVGRHNVANALVVLALLEQAGVDISLGIDALKSYNGLTHRC---QVVADNNGVKWVND 322

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA+S L        G+   ++G   +  + S     +L   L   ++  +
Sbjct: 323 SKATNVASTLAALSGL-----SLSGKLYLLVGGDGKGADFS-----ELQPALDQLDV-QL 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              G         LP   +    ETM+ +  +    +  GD++++
Sbjct: 372 CCFGADGDKF---LPLHRNAKRFETMEDIVKWASPRVEAGDMIML 413


>gi|291547126|emb|CBL20234.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ruminococcus sp.
           SR1/5]
          Length = 451

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 94/322 (29%), Gaps = 39/322 (12%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +    + E+    L  I       RP ++ I  I   HL+    +EE    K  I + 
Sbjct: 155 MREDSVTVAEISSFQLETID----QFRPKVSAILNITEDHLNRHHTMEEYIRVKELITKN 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                   LNY+D   E+L+     +  K +Y     K          Q   ++  E   
Sbjct: 211 QGPEDVCVLNYED---EVLRKFGENIVPKVVYFSSLRKLDQGIYLDGDQIILKTEKEEIP 267

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K+ E+   G   H        +   + ++ +         V  P      R      +
Sbjct: 268 IVKTEELKILGRHNHENVMAAAAMAYYAGVSVESIRKSVCEFVAVP-----HRIEYVTEK 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   NP +    I  +++ +    G            G   +S + +  E  
Sbjct: 323 NGVAYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYDKESSYDEWIESF 370

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
               + ++ L G     +K A  R     +   E +             GD V++    +
Sbjct: 371 D-GKVRYLVLIGQTKEKIKAAAERLGFTDIILCEDLKEAVRVCAEKANPGDAVLLSPACA 429

Query: 452 S---------NSCGFYRLINLL 464
           S             F   +  L
Sbjct: 430 SWGQFDNYEQRGDMFKEYVKAL 451


>gi|220933950|ref|YP_002512849.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995260|gb|ACL71862.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 475

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 77/414 (18%), Positives = 139/414 (33%), Gaps = 44/414 (10%)

Query: 53  GHD--FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           GHD  ++  A      LVV +     +   ++     +  V  A   LA   R R     
Sbjct: 63  GHDAAYVQDAD----VLVVSSAIDPRNPELIAAREARIPVVRRA-EMLAELMRFRHG--- 114

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  ++   L+        +     +     +  R+     + + E   S
Sbjct: 115 IAVAGTHGKTTTTSLVASLLAEGGLDPTFVIGGRLNSTASHS--RLGQGA-YLVAEADES 171

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +      ++P IAV+T I   HL+ +      + +   E    L   G   L  +D
Sbjct: 172 DASFLH-----LQPIIAVVTNIDADHLATYQGDFGRLRATFLEFLHHLPFYGLAVLCAND 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHG 287
                + A+     +    ++G   +AD   R  +    ++  E+ L  +     V  + 
Sbjct: 227 RELAGMIAEVGRPVL----TYGIGVDADVTARNVRAEGTRTHFEICLPERDDTLAVTLNL 282

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  + +   L  D     + L  F     R + Y           + + Y 
Sbjct: 283 PGRHNVLNALAAVAVAHELGVDDAAIQQGLDKFQGIGRRFQVYGELKTAAGTVTLVDDYG 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P  + A ++      P        VL         ++    D AEVL   +   + L 
Sbjct: 343 HHPTEIAATLAAARDAWPDR----RLVLAFQPHRYTRTRDLFEDFAEVL--SSPDALVLL 396

Query: 408 -----------GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
                      G     L  A+     V+  + +  +     ++  L DGDV++
Sbjct: 397 DVYPAGEAAIPGADGRTLARAIRARGRVNPVFVDAPERFVETLKGVLRDGDVLL 450


>gi|296272311|ref|YP_003654942.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096485|gb|ADG92435.1| UDP-N-acetylmuramyl-tripeptide synthetase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 425

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/437 (12%), Positives = 117/437 (26%), Gaps = 55/437 (12%)

Query: 28  NGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVF 86
           N I  D S+      AF        +   FI  A + G    + + D+       SI V 
Sbjct: 7   NKIYTDNSKEADKNSAFVY---SKQN-EKFIEDAKKNGCKEFIKSEDLKNHCDFTSIKVI 62

Query: 87  GVDDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           G+    G     A    L       +A+ G+ G           ++  +     + +   
Sbjct: 63  GITGTNGKTTTAAAIYSLLLDLGYKVALQGTRG---------FFINEQRVEEYSLTTPVQ 113

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                     +    DF + E+  S     +     +   + ++T I   HL     IEE
Sbjct: 114 LGNFAHIQKAIENSCDFFVMEV--SSHAIEQKRIEGLNFELKILTNITRDHLDYHKTIEE 171

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             + K             F N D                K   ++G    + ++++ +  
Sbjct: 172 YINVKNS-----------FFNDDSKKLINKDEIKAKFNPKNCLTYGLDSPSTYKVQAYSF 220

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
                      +            +++         +       ++   +A+  F    G
Sbjct: 221 KDGMHVALQNFEKVESFTSMMMGLFNVYNLTAAIAAVHMTTNKSLNEICEAVENFAGVSG 280

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R       L+   + ++D ++  +         +   +   G    I V G     G   
Sbjct: 281 RM----ETLSLNPYIIVDFAHTPDG--------MKEVLQSFGHKDIIVVFGA----GGDR 324

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLF 436
                 +   ++     H+ ++  +            + + +     V            
Sbjct: 325 DKAKRPIMGKVADTFAKHIIVTSDNPRFEDPDLIIEDILEGINDKSKVEVEINRKIAIKK 384

Query: 437 IQSSLVDGDVVVV--KS 451
                 +  V++V  K 
Sbjct: 385 AIDLYSENSVILVLGKG 401


>gi|312196220|ref|YP_004016281.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EuI1c]
 gi|311227556|gb|ADP80411.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EuI1c]
          Length = 502

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 120/395 (30%), Gaps = 35/395 (8%)

Query: 65  AGLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A LVV +      T + A+  +  +PV+          ++ +  R+R  A  +AITG+ G
Sbjct: 87  ARLVVTSPGVPPGTPLFAAARAAGVPVW---------GEIELGWRIRPAARWLAITGTNG 137

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFELGMSHLGEIRF 177
           KTTT EML   L++  +      +   +IG P+  A +     D    EL    L     
Sbjct: 138 KTTTTEMLGAILTAAGR----RAATAGNIGTPVVTAALAEPPYDTLAVELSSFQLHYTET 193

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                 P  A I  +AP HL    G +  A+ KA I+           +   S   L  A
Sbjct: 194 AV----PVAAAILNVAPDHLDWHGGPDGYAADKARIWMHPATIAVGNADDPGSAALLAAA 249

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
               +      +  +    D  L               L            G        
Sbjct: 250 PGRRVTFGLDPATAEVTVVDGWLVDRAFGGGPLVAVADLLAGPRPDGSAQGGSAQGAPGP 309

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
               + + L A        +               A      T +D     + +      
Sbjct: 310 GRHLVANALAAAALARADGVEPAAIASALAAYRPGAHRNALVTTVDGVRYVDDSKATNPH 369

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +  + ++ +     IA        G        +L E+ +   +  V L G     +  A
Sbjct: 370 AAAASLTAYPSVVWIA-------GGLNKGLAFDELVELAAGR-LRAVVLIGRCADEIAAA 421

Query: 418 LPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L R    + +  +  MD            GD V++
Sbjct: 422 LARHAPDVPMERAAGMDDAVEAAARLARAGDTVLL 456


>gi|319957077|ref|YP_004168340.1| hypothetical protein Nitsa_1340 [Nitratifractor salsuginis DSM
           16511]
 gi|319419481|gb|ADV46591.1| hypothetical protein Nitsa_1340 [Nitratifractor salsuginis DSM
           16511]
          Length = 328

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 7/107 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               DL+    G          +   ++    +   + FFA +      ++ I  AV++G
Sbjct: 3   MKISDLINITGGTLDNEPQVQAIESATVFPSKVERGDLFFAAR------NEDIPAAVERG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A  V+   +    +    I    VD V  A  +L     LR +A ++
Sbjct: 57  AYAVIYAGERPRDLDEE-IAWIEVDSVKEAAFRLLRYVMLRKEAEVV 102


>gi|15595162|ref|NP_212951.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi B31]
 gi|216264426|ref|ZP_03436418.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
 gi|3914076|sp|O51757|MURC_BORBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2688761|gb|AAC67166.1| UDP-N-acetylmuramate--alanine ligase (murC) [Borrelia burgdorferi
           B31]
 gi|215980899|gb|EEC21706.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 156a]
          Length = 468

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|121606308|ref|YP_983637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595277|gb|ABM38716.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polaromonas
           naphthalenivorans CJ2]
          Length = 503

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 100/354 (28%), Gaps = 20/354 (5%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHIGVPLTLARMPVDV-- 160
             ++ ITG+ GKTT   +    +    K+            +   G     AR P     
Sbjct: 121 PKVVGITGTNGKTTVTSLTGQLIERAGKSVAVAGNIGPTLLDTLTGKLDEHARDPSAALP 180

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +F + EL    L           P +A +  I   HL     +   A+AK+ ++      
Sbjct: 181 EFWVLELSSFQLD----GVTNFEPDVATVLNITQDHLDWHETLPAYAAAKSHVYGRSGLM 236

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +        + A       ++  +FG  +         +  +  +W+    +   
Sbjct: 237 LLNRNDPLVMT--AVPALVKGKPGRSYLTFGGDEPKRPGDYGIETVNGMAWLVRAAEADE 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                      +    LM L  + I      T   A        G          + +  
Sbjct: 295 TIKRRKAEELVLHIQRLMPLEALRIQGRHNATNALAALGLAVAVGCPLAPMLHGLREYRG 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-----GELSQSFHIDLAEV 395
                 +                +       +A LG   ++     GE        LA+ 
Sbjct: 355 EPHRVESVAVLEGIEYFDDSKGTNVGATVAALAGLGSERKLVLILGGEGKGQDFSPLADP 414

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++ Y +  V L G     ++ AL  S + +  + +M             GD V+
Sbjct: 415 VARY-VRVVVLIGRDAPLIRAALQGSRVELLDAASMQEAVSLAAGQARPGDAVL 467


>gi|257125000|ref|YP_003163114.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
 gi|257048939|gb|ACV38123.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Leptotrichia
           buccalis C-1013-b]
          Length = 459

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/370 (16%), Positives = 122/370 (32%), Gaps = 39/370 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA     +    II+ TG+ GKTTT   +      +            + G        
Sbjct: 81  DLAYKYVDK-NVKIISFTGTNGKTTTSTKMA----ELLNFSGFRAKLAGNAGFSFAKLVA 135

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D+ + EL    L         +  +IA I  + P HL+ ++ +E+    K  IF+
Sbjct: 136 DEEKLDYIVLELSSYQL----ENNPQIHSNIAGIINLTPDHLTRYNSVEDYYITKFNIFD 191

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY------------SFGKSKNADFQLRKW 263
              ++    +N DD  FE L  ++                        K+     +  K 
Sbjct: 192 KQVESDFALINLDDKEFEKLYERNEIKEKIKSKKIYLSTETKGTIFVYKNDICIMKDFKK 251

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +    +++ E   +   + +    +      N+   L ++        +  K        
Sbjct: 252 RIDEIENFDENVDKVSEILMKTDELSLKGKHNLENMLFLIGSAKILNISNEKISEFLKST 311

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R      +G    I++S   N  S   AI              I +LG     G+
Sbjct: 312 VALEHRLENFFIKGNTIFINDSKGTNVESTLKAIDSFD-------NSIIMILG-----GD 359

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSL 441
             +  ++ L E +       V+L G +   L D + +  + +Y   ET++ +  +++ ++
Sbjct: 360 DKKIDNMPLIERIKE-KADFVYLIGDNAQILIDDMEKIGYKNYKNLETVENVLNYLKENI 418

Query: 442 --VDGDVVVV 449
                  V+ 
Sbjct: 419 DFSKNQTVLF 428


>gi|187933070|ref|YP_001884399.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium botulinum B
           str. Eklund 17B]
 gi|229486482|sp|B2TI04|MURC_CLOBB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187721223|gb|ACD22444.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum B str.
           Eklund 17B]
          Length = 460

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 113/364 (31%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  +    +       +AI+G+ GKTT   ML+            +      I   + 
Sbjct: 101 EFLGSIMKGHKYN-----VAISGAHGKTTCTSMLSNITLKANLDPTILVGGELDI---IG 152

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D+ I E       E +       P++ VI  I   HL  +  I+EI     +
Sbjct: 153 GNFRIGSSDYFITEAC-----EYKRSFLSFFPYVGVILNIDADHLDYYKDIDEITETFGQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G +     D     +K         T+    ++ +   +   + +    S+ 
Sbjct: 208 FADLIPNDGYLIGYVGD---SRVKEILFKAKCNTLSYGFENADVTARNITFNEKGCASFD 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +   K  ++     G H   N L ++ +  I   + D  I  LS       R +    
Sbjct: 265 VYKHNDKLFDLTLSNPGEHNILNALSSICVSLIFDVNYDDIICGLSECKGAHKRFEYKGE 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI--------AVLGDMCEMGEL 384
                    + + Y  +P  +KA ++   +I  +                L D       
Sbjct: 325 VNG----VTVIDDYAHHPVEIKATLNTSKKIPHNKTFCVFQPHTYTRTKTLFDEFTDAFF 380

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
                + +    +    + +  S    +AL+    + +      + D    ++++S    
Sbjct: 381 DADEVVLMDIYAAREKDTGLVSSNDLGVALR---AKGVKCTNVHSHDEALEYLKNSAKPN 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|221217628|ref|ZP_03589097.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224533430|ref|ZP_03674023.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225550260|ref|ZP_03771219.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226320864|ref|ZP_03796416.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
 gi|221192574|gb|EEE18792.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 72a]
 gi|224513392|gb|EEF83750.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi
           CA-11.2a]
 gi|225369128|gb|EEG98582.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 118a]
 gi|226233730|gb|EEH32459.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi 29805]
          Length = 468

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 128/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + M    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAMAGISNIFIVETC-----EYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A       L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLRYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFKE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|191638274|ref|YP_001987440.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           casei BL23]
 gi|226711915|sp|B3WDY1|MURD_LACCB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|190712576|emb|CAQ66582.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Lactobacillus casei
           BL23]
 gi|327382306|gb|AEA53782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei LC2W]
 gi|327385501|gb|AEA56975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           casei BD-II]
          Length = 459

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/321 (15%), Positives = 91/321 (28%), Gaps = 42/321 (13%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             D  + EL    L         + PHIAV+T I  AHL          +AK  I     
Sbjct: 161 KDDTIVAELSSFQL----CGIKTLHPHIAVLTNIYEAHLDWHGNRANYVAAKMRITMNQT 216

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                 +N+D      L  +  +      +S   ++ A  QL       +          
Sbjct: 217 PDDYFIMNWDLPEMHELAKQ--SKAQIVPFSRKNAEGARAQLIDGWLTFDG-------DR 267

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H  +N L  +  V +     D   + L  F   + R +       +  
Sbjct: 268 IMKASEMQIPGLHNIENALAAIAAVKLEGVGDDAIREVLRTFSGVKHRIQYLETIDGR-- 325

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             + ++S   N  +   A++   Q      G     L  M  +              L  
Sbjct: 326 -RVYNDSKATNVEAATVALNAFDQPIVWLAGGLDRGLP-MDAL------------TPLVK 371

Query: 399 YNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-- 452
            ++  + + G     +        + V  +E +             GDV+++    +S  
Sbjct: 372 KHVKSMVVFGQTAPLMAKIGKDAGVPVQTTENVMTAVPLAYEVSRPGDVILLSPAAASWD 431

Query: 453 -------NSCGFYRLINLLLE 466
                      F + +N L  
Sbjct: 432 QYPNFEVRGDDFIKAVNQLKA 452


>gi|25028608|ref|NP_738662.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259507666|ref|ZP_05750566.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|29336721|sp|Q8FNU1|MURC_COREF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|23493894|dbj|BAC18862.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
 gi|259164713|gb|EEW49267.1| UDP-N-acetylmuramate--alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 489

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 75/414 (18%), Positives = 136/414 (32%), Gaps = 39/414 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +      +IPV    D    L +L    R       + I G+ GKT+T  M  +AL
Sbjct: 95  DNPELVRAREENIPVIRRSD---LLGELLEGHRQ------VLIAGTHGKTSTTSMAVVAL 145

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +     +          +            +  + E   S    +R+      P IAV+
Sbjct: 146 QAAGMDPSFAIGGQ----LNKAGTNAHQGTGEAFVAEADESDASLLRYT-----PEIAVV 196

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I P HL  F   E       +  + L   GT+ +  DD     L  ++ A GI  +  
Sbjct: 197 TNIEPDHLDFFKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAALGERAVARGINAVGY 256

Query: 250 -------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                     +      +   +  +E ++  + + G+ +E++    G HM  N    L  
Sbjct: 257 GTVDAVAAHPTVPVKATILSSRVVAEGTYAVLDIDGREVEIILQIPGNHMVLNGAAALLS 316

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +L AD+D     LS F     R + +       F         A+  +   A+   ++
Sbjct: 317 GYLLGADLDKLAAGLSDFSGVRRRFEYHGTVRGGQFDGASVYDDYAHHPTEVEAVLKAAR 376

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLA 413
                 G    ++     +   +  F  + A  LSL + + +            G     
Sbjct: 377 ERVDAAGEGRVIVAFQPHLYSRTLEFAREFAGALSLADAAVLLEIFGAREKPVEGVTSRV 436

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
           + D +  +I V Y      +   I       D+V+   + S     L   +L+ 
Sbjct: 437 ITDEM--TIPVSYEPNFSAVPDRIAEIAGPADIVLTMGAGSVTM--LAPEILDR 486


>gi|308403999|ref|ZP_07493926.2| hypothetical protein TMLG_04180 [Mycobacterium tuberculosis
          SUMu012]
 gi|308365616|gb|EFP54467.1| hypothetical protein TMLG_04180 [Mycobacterium tuberculosis
          SUMu012]
          Length = 84

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 7  FHDLLQAIQGHSIGIV------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
             L   +                  V G+++ ++ ++P + F A+ G    G   +  A
Sbjct: 22 LAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDA 81

Query: 61 VQK 63
          + +
Sbjct: 82 IAR 84


>gi|294142404|ref|YP_003558382.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
 gi|293328873|dbj|BAJ03604.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shewanella violacea DSS12]
          Length = 476

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 114/374 (30%), Gaps = 30/374 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI+G+ GKT+T  ML      ++      G     +     ++    +  F + E   
Sbjct: 109 VLAISGTHGKTSTSSMLA---WILEDCGYEPGFLIGGVPQNFGVSARLGNSPFFVVEADE 165

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R      +    VI  +   H   F  ++ I      +   +   G I    
Sbjct: 166 YDSAFFDKRSKFVHYQARTLVINNLEFDHADIFDDLKAIQRQFHHVIRTVPGEGKIIWPK 225

Query: 228 DDSFFELLKAKSHALGIKTI-----------YSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           D    + +         +                    N      +        +     
Sbjct: 226 DCEAVQQVIDMGCWSEQEVYAGNCADLVSVNKGSSAGDNKGTWSSQLIAADGHKFELFFD 285

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    IG H  +N  M +     +      AI+AL+ F P + R +        
Sbjct: 286 GESQGILDWALIGQHNVENATMAIAAARHVGVKPLAAIQALAQFEPPKRRMELIGTIKG- 344

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                  + Y+       A  + L          +I ++ +       S      LA  +
Sbjct: 345 ------IDVYDDFAHHPTAIATTLQGCRAKVGEAKITIILEPRSNTMKSGVHKDTLANSM 398

Query: 397 SLYNISHVWLS-GFHVLA-LKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           SL      +L  G  +   ++ A+ ++   V     +D +   + +    GD ++V  SN
Sbjct: 399 SLA--DEAYLYQGDSIDWDIEAAMEKAELPVSVLYDIDEIVAAVANKANSGDTIIV-MSN 455

Query: 454 SCGFYRLINLLLEE 467
             GF  L   LLE+
Sbjct: 456 G-GFGGLHKKLLEK 468


>gi|146291932|ref|YP_001182356.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
 gi|145563622|gb|ABP74557.1| UDP-N-acetylmuramate [Shewanella putrefaciens CN-32]
          Length = 464

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 18/360 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++      G     +     ++    +  F + E   
Sbjct: 108 VLAVSGTHGKTSTSSMLA---WILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEADE 164

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   VI  +   H   F+ +  I      +   +   G I    
Sbjct: 165 YDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWPV 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    +           +  ++         +           +           +    
Sbjct: 225 DVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCHC---FEVFFDGESQGVLEWDL 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H  +N +M +     +      AI+AL+ F P + R +          +    + + 
Sbjct: 282 IGQHNIENAIMAIVAARHVGVKPSAAIEALAQFIPPKRRLELLGTVNGISVY----DDFA 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++    + L  +       +I V+ +       S      LA  +   + + ++ +
Sbjct: 338 HHPTAI---ATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQADEAFLYQA 394

Query: 408 GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +K+A+  S I V     +D +   + ++   GD +VV  SN  GF  L   LL 
Sbjct: 395 DTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV-MSNG-GFGGLHKKLLA 452


>gi|306779455|ref|ZP_07417792.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
 gi|308327593|gb|EFP16444.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelat E ligase
           MurE [Mycobacterium tuberculosis SUMu002]
          Length = 425

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 64/407 (15%), Positives = 119/407 (29%), Gaps = 43/407 (10%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSS 132
               G  ++PV       G L  LA           T+I ITG+ GKTTT  ++   L +
Sbjct: 1   AEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRA 60

Query: 133 IKKTYACIGSYNNHIG------------VPLTLARMPVDVDFGIFE--LGMSHLGEIRFL 178
             +    IG+    +G             P   A +   V+ G+    + +S        
Sbjct: 61  AGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGR 120

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               R  +   T ++  HL     + +   AKA +F+                       
Sbjct: 121 VDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMA 180

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           + A    T+ +  +  +             Q +  +   G    +     G +   N L+
Sbjct: 181 ARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIRLPGRYNVANCLV 240

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I+  +    + A+  L          +  R         L    Y   P ++++ ++
Sbjct: 241 ALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LALVDYAHKPEALRSVLT 295

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----- 413
            L+    H + R   V G     G+        +  + +      V ++  +        
Sbjct: 296 TLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTA 347

Query: 414 -----LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
                L  A          E            +    GDVV++  K 
Sbjct: 348 IRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 394


>gi|257877577|ref|ZP_05657230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
 gi|257811743|gb|EEV40563.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC20]
          Length = 455

 Score = 51.4 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 93/291 (31%), Gaps = 32/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I      +RP IAVIT I  AH+       E   AK  + + +   
Sbjct: 167 DRLVMELSSFQLMGID----TLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTAD 222

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N++    E L AK      + I    K K A   +       ++       +   
Sbjct: 223 DYLVINWNQPELEALSAK---SNAQIIPFSTKEKVAGAYMLDGILYYKE-------EVIM 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   +AL  F     R    +         
Sbjct: 273 AADELGVPGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRT---QYVTTINQVK 329

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+          +  ++ +L    + G            V +L  
Sbjct: 330 FFNDSKATNILATEMAL-------GGFDNEKLILLAGGLDRGNSFDDL------VPALKG 376

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + L G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 377 LKAIVLFGETKEKLAAAAQAAGIKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|323142004|ref|ZP_08076855.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413536|gb|EFY04404.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 466

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 84/298 (28%), Gaps = 34/298 (11%)

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P IAV+  + P HL     +E    AK  IF    +     LNYDD       A++  
Sbjct: 184 FCPDIAVVLNLTPDHLERHHTMEAYGEAKKNIFRQQGEVQVTVLNYDDPIVRTWGAETKG 243

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                       +    Q   +    +      + +        H  G H  +N+L  + 
Sbjct: 244 RLCYFSRKEKLQQGIYMQDGNFIISWDG-----KQETVCNISELHLFGGHNEENVLAAIA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                   +      L  F   E R                ++S   N  S   A+    
Sbjct: 299 CGFFAGVSISDMADVLRNFRSIEHRI---EYVATIDGVPYYNDSKATNTDSTIKALEAFK 355

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                 +G  I + G     G    +    + E++       + L G        A    
Sbjct: 356 ------DGHIILLAG-----GHDKLTPLEPMMELVKE-KTDALILLGAAKERFNKAAVAC 403

Query: 422 I--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
              ++  +++ +       S      VV++    SS             F +L++ L 
Sbjct: 404 GVQNIVLADSFEDAVSKAHSMAHKPQVVLLSPACSSFDMFKNYPERGNYFKKLVHELE 461


>gi|312148369|gb|ADQ31028.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi JD1]
          Length = 468

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + M    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAMAGISNIFIVETC-----EYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLKYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|269838015|ref|YP_003320243.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
 gi|269787278|gb|ACZ39421.1| UDP-N-acetylmuramate/alanine ligase [Sphaerobacter thermophilus DSM
           20745]
          Length = 473

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 122/386 (31%), Gaps = 29/386 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   VA+  +  IP+        AL       RL  +   +A+ G+ GK+TT  ML +AL
Sbjct: 87  SNPEVAAARARGIPIIK----RAAL-----LGRLCDERVCLAVAGTHGKSTTSGMLALAL 137

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
               +           +   L     P    F + E       E  +    + P +AV+T
Sbjct: 138 VHAGED---PSFAVGAVVKELGTNARPGAGPFFVAEAD-----EYDYSFLWLHPDVAVVT 189

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F   E +  A      G+   GT+ ++ DD     L A+        + +F
Sbjct: 190 NIEHDHPDLFPSRESVLEAFTRFVSGMRPDGTLVVSADDPGCRDLLARLGDRRP-RVVTF 248

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G   NAD+ + + ++      +           +     ++    +       +   A  
Sbjct: 249 GSDPNADWSIVRDEETGSGDLVRAPGGRTLRLRLAVPGWHNRLNALAALAAGEAAGVAPE 308

Query: 311 D-----TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                  A   +       G+ +      +         +          A  + +   P
Sbjct: 309 RLLPGLAAFGGVGRRFEVRGQARGVTVVDDYAHHPTEIRATIEAARERYPAARLWAVFQP 368

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
           H   R   +L D      LS + ++ LA + +    + +   G     +   +     V 
Sbjct: 369 HTYSRTREMLDDFA--AALSLADYVVLAPIYAARETNDL---GVSSADIAGRMA-GRPVV 422

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKS 451
             E+       + +    GDVV++  
Sbjct: 423 VVESPAAAGEVVAADAEAGDVVLILG 448


>gi|294783653|ref|ZP_06748977.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
 gi|294480531|gb|EFG28308.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 1_1_41FAA]
          Length = 432

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 136/404 (33%), Gaps = 68/404 (16%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATII 111
           +DF+    ++G                       V D +    ++A         K  II
Sbjct: 60  NDFVKEVQKRG---------------------IKVLDEI----EVAYNYMVEKNLKTKII 94

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AITG+ GK+TT   ++  L+         G+    +   L   +   D+DF   EL    
Sbjct: 95  AITGTNGKSTTTAKISDLLNHAGYKACYAGNIGRSLSEALLHEK---DLDFVSLELSSFQ 151

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L  +       RP+I++I  + P H+  ++  +E    K  I +  ++      N DD  
Sbjct: 152 LENVE----NFRPYISMIINMGPDHIERYNSFDEYYDTKFNIAKNQDENQYFIENIDDVE 207

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
            E    +  A  I    S           ++     E + + V              G H
Sbjct: 208 IEKRAKQIKAKRISVSKS-----------KEANVYVEDNKIYVGKDFIIEADKLSLKGIH 256

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N L  +    IL  D +   + L V  P E R        N G    I++S   N  
Sbjct: 257 NLENTLFMVATAEILNIDREKLKEFLMVATPLEHRT---ELFFNYGDVKFINDSKATNVD 313

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           S K AI           G    V                 LAE++   NI  V+L G   
Sbjct: 314 STKFAIQANKDSILICGGYDKGV-------------DLAPLAEMIKE-NIKEVYLIGVIA 359

Query: 412 LALKDALPR----SIHVHYSETMD-GLFLFIQSSLVDGD-VVVV 449
             ++  L +    +  +H  ET++  L    +    D D V+++
Sbjct: 360 DKIETELKKVGYEASKIHKLETVENSLLDMKKRFTKDSDEVILL 403


>gi|15834759|ref|NP_296518.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum Nigg]
 gi|7190176|gb|AAF39017.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           muridarum Nigg]
          Length = 433

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/404 (13%), Positives = 104/404 (25%), Gaps = 74/404 (18%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           ++ D      + +  +  V D+     +LA   +   +     ITG+VGKTTT   L   
Sbjct: 85  ISKDHPWVKAARAAQISVVTDI-----QLAFQTKEFIEQKSFGITGTVGKTTTILFLEYL 139

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L               ++GVP+            +  + MS        T        +I
Sbjct: 140 LRKAGI----PAFAMGNVGVPILDGMQNSG----VRLVEMSSFQLADQETSYPVLSGGMI 191

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I+  HL       E   +K  +   +     +++                        
Sbjct: 192 LNISDNHLDYHGSFLEYCQSKQNLSLCMRNPEDLWVG----------------------- 228

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D +        E       L  +S     +    +           +      
Sbjct: 229 -------DQRFCGRSYWEEVQKYMRLLDKESALKPLYLHDKYNYCCAY-----LLAQAEF 276

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                  +      +    R      +     I++S      + + A+  +         
Sbjct: 277 PIAKSLFIEAVATFKKPSHRMEYLGEKCGVHYINDSKATTVRATEKALLSI-------GS 329

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
           R I +LG     G       + L   L  +    V   G     +   L     V     
Sbjct: 330 RAIVILG-----GRNKGYSFVSLLPSLRRFA-KSVVAMGECAQEIAQDL-DGFPVTVVRN 382

Query: 430 MDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLI 461
           +    L  +   + GDVV++    +S             F +L+
Sbjct: 383 LHEALLCAEEQAIPGDVVLLSPACASFDQFRSYEERGAIFKQLV 426


>gi|75765115|ref|ZP_00744396.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
 gi|74487397|gb|EAO51332.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bacillus
           thuringiensis serovar israelensis ATCC 35646]
          Length = 337

 Score = 51.4 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 99/315 (31%), Gaps = 32/315 (10%)

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                   N   V   +A+   + +  + EL    L  +       +P IA    +  AH
Sbjct: 25  QKHPVIAGNIGTVACEVAQDAKENEVVVTELSSFQLMGVE----SFQPKIAAFLNLFEAH 80

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L      +E   AKA +F+   +     +N DD+    L A +    I    +       
Sbjct: 81  LDYHGTKKEYGLAKANVFKNQTENDYSVINADDADVMELSADTKGQKILFSTT------- 133

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +  +   C + + +  + +           G H  +N+L  + I  +L    +     
Sbjct: 134 --KEIEDGACIKDNALYFKGEKVVEVSDIVLPGQHNLENILAAMSIAKLLGTSNEAITVV 191

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F   + R                ++S   N  + + A+S  +Q      G       
Sbjct: 192 LKRFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPIVLLAG------- 241

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLF 434
                G    +   DL       N+  +   G     L  A  ++    +   +T+D   
Sbjct: 242 -----GLDRGNEFDDLIPYFK--NVKAIVTFGQTAPKLVRAAEKAGLDIIESVDTLDEAV 294

Query: 435 LFIQSSLVDGDVVVV 449
           +   +   + DVV++
Sbjct: 295 VKAYAHSKEDDVVLL 309


>gi|312143936|ref|YP_003995382.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
 gi|311904587|gb|ADQ15028.1| UDP-N-acetylmuramate/alanine ligase [Halanaerobium sp.
           'sapolanicus']
          Length = 453

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/394 (15%), Positives = 125/394 (31%), Gaps = 30/394 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA L+V  + +  +   ++      ++ +  + +  + A L      IAI G+ GKTTT 
Sbjct: 64  GADLIVKTSAIPENNPEINAAQ---NNRIKIIERAEMLAYLMRNKKTIAIAGTHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML   +++  K  A        I V   L  +  ++  G  E  ++   E         
Sbjct: 121 AMLASIMTAADKDPA--------IMVGGYLEDIKGNISDGKGEYFITEADESDGSFLYFD 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P++ ++T +   H   +  + E  +      +  EK   +  N DD   + L        
Sbjct: 173 PYLLLLTNLELDHPDYYKDLAEFKAIFKRFADKNEKKALVLYNGDDKNLKDLFKNRKKTK 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 F                ++ S+   Q     M++     G +   N    +   
Sbjct: 233 A-----FSLKNYDYSVKNISYDKNKSSFDFYQADNFLMKINLSSAGEYNIYNAAAAVSTA 287

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-------KAA 356
             L  +     KAL  F     R +      N     + D +++                
Sbjct: 288 LELDIETKFIKKALKTFKGVGRRFELKAKINNGTVDVVDDYAHHPTEIKALLKAVKQMGY 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             + +   PH   R    L +       +   ++      S      +      +     
Sbjct: 348 SRITAVFQPHRFSRTKKFLKEFSYSFVDADFVYLTDIFSASEQYKETI-----SMEKFSQ 402

Query: 417 ALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + +  +  V Y    D + L ++ +L+ G++++
Sbjct: 403 EIEKHSNTEVKYLADFDKIALQLKENLISGEIIL 436


>gi|307544550|ref|YP_003897029.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesyntheta se [Halomonas
           elongata DSM 2581]
 gi|307216574|emb|CBV41844.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Halomonas
           elongata DSM 2581]
          Length = 214

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 24/208 (11%)

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +++W+                G H   N L  L +   L   +    + L  F     R 
Sbjct: 12  QRAWLMHGNSPLMPAESLRLQGLHHQANALAALAMGHRLGLPLSAMTRVLERFGGLPHRC 71

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                  +      I++S   N  +    ++ ++ I P  EGR I + G + +  + +  
Sbjct: 72  ---EWIADLDGVRWINDSKGTNVGAT---LAAIAGIGPTLEGRVILLAGGVGKGADFTP- 124

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               LA  L  Y      L G     L+ AL  ++  H  E +           V GD V
Sbjct: 125 ----LAAPLQRYG-RAAILFGRDADKLESALEDALPRHRVEDLSAAMERAAEIAVPGDCV 179

Query: 448 VV---KSS---------NSCGFYRLINL 463
           ++    +S             F R +  
Sbjct: 180 LLSPACASLDQFPNYQARGEAFRRAVER 207


>gi|224438097|ref|ZP_03659036.1| hypothetical protein HcinC1_08985 [Helicobacter cinaedi CCUG 18818]
          Length = 349

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +++ +  QG  +        + I      I   + F A      D    I  A++ G
Sbjct: 1   MRVNEVAEITQGKLLNSPSIAEFSRIICHIEQIQRGDVFIA-----NDSTQ-IPKAIESG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++ +   +  I S  I    V++V  +L +L     L      I++
Sbjct: 55  AYGIIYDNPQMEMIDSE-IAWILVENVADSLIRLIRYKLLAKNIATISL 102


>gi|296273247|ref|YP_003655878.1| cytoplasmic peptidoglycan synthetase domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097421|gb|ADG93371.1| cytoplasmic peptidoglycan synthetase domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 329

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 8/95 (8%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G         F+  I  D + +   + F  +K    D    I  A+Q GA  +V +    
Sbjct: 12  GELKNSPSISFIYNIKTDPKKVIEGDLFL-VK-NKDD----IEIAMQNGAFAIVYD--FE 63

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
             +    I    V  V  AL KL           +
Sbjct: 64  IEVLDKEIAWIKVPSVYEALVKLFRYKFSTLNLEV 98


>gi|312149248|gb|ADQ29319.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi N40]
          Length = 468

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGRSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|299533097|ref|ZP_07046482.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
 gi|298718874|gb|EFI59846.1| UDP-N-acetylmuramate [Comamonas testosteroni S44]
          Length = 472

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 111/425 (26%), Gaps = 46/425 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VV+   +         +  + D   A       LA          ++A+ G+ GKTTT  
Sbjct: 70  VVSRKRLPDGSPKFPLMEAILDTGAAYTSGPQWLAEHVLR--GRHVLAVAGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYAC-IGSYNNHIGV---------PLTLARMPVDVDFGIFELGMSHLGE 174
           MLT  L          +G      GV         P        D    + E        
Sbjct: 128 MLTWVLECAGLQPGFLVGGVPLDFGVSARLGAAQRPAAGPGPVGDEPVFVIEADEYDTAF 187

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  AV+  +   H   F  +  I      +   +  TG +  N  +   
Sbjct: 188 FDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLIRTVPSTGRVVSNGLEESL 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGY 290
             + A+     +++  S     +AD     +                      ++     
Sbjct: 248 TRVLAQGCWSEVRSFGSAVSDFSADGDPSDFAVLHRGKKVAQLRWSLTGVHNQLNALAAI 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A ++ ++  +     +      + + +     G       A +        +      
Sbjct: 308 AAADHLGVSAEVACESLSRFQNVKRRMELRGTVNGIEVYDDFAHHPTAIRTTLDGLRRKL 367

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SG 408
            +          ++          LG M      S              +   V+   +G
Sbjct: 368 GA------EARILAVFEPRSNTMKLGTMKSQLPWSLE------------SADLVFCHTAG 409

Query: 409 FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               A +      +        +  ++ L   I + +  GD + V  SN  GF  +   L
Sbjct: 410 LDWDAAEALESMGVGPGQRAQVAGDIETLIAQISAVVRPGDHI-VCMSNG-GFGGIHAKL 467

Query: 465 LEEFP 469
           L+   
Sbjct: 468 LQALK 472


>gi|146305958|ref|YP_001186423.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
 gi|189029020|sp|A4XQS5|MURC_PSEMY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145574159|gb|ABP83691.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas mendocina ymp]
          Length = 480

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 77/415 (18%), Positives = 138/415 (33%), Gaps = 48/415 (11%)

Query: 56  FILHAVQKGA---------GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           FI HA +  A           V  +   VA+     IPV         +  LA   R R 
Sbjct: 67  FIGHAAEN-AEQADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRH 119

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ G+ GKTTT  +L    ++       +     +               F I E
Sbjct: 120 G---IAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLN---AAGTNAQLGSSRFLIAE 173

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFL 225
              S    +      ++P ++V+T I   H+S +      +     E    L   G   L
Sbjct: 174 ADESDASFLH-----LQPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVL 228

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVV 284
             DD     L  +     +    ++G +++AD +    +Q   +++  V        +V 
Sbjct: 229 CVDDPVVRELLPQVGRPTV----TYGFAEDADVRAINVRQEGMRTYFTVLRPDCEPLDVS 284

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H   N L T+ I +    D    +  LS F     R + Y      G   ++ +
Sbjct: 285 VNMPGNHNVLNALATIAIATDEGIDDAAIVAGLSGFQGVGRRFQVYGELPVDGGSVMLVD 344

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            Y  +P  + A I  +    P        V+         ++  + D  +VL   N+  +
Sbjct: 345 DYGHHPREVAAVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVQVLGEANVLLL 400

Query: 405 WLS---------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                       G     +  ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VEVYPAGEEPIPGADSRQMCHSIRQRGQLDPIYVERGVDLAPLLKPLLRAGDILL 455


>gi|153809796|ref|ZP_01962464.1| hypothetical protein RUMOBE_00177 [Ruminococcus obeum ATCC 29174]
 gi|149833974|gb|EDM89054.1| hypothetical protein RUMOBE_00177 [Ruminococcus obeum ATCC 29174]
          Length = 463

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 96/334 (28%), Gaps = 40/334 (11%)

Query: 146 HIGVPLTLARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P T   +   D    + E+    L  I        P ++ I  I   HL+    +E
Sbjct: 155 NIGTPYTSKALEMKDSSTTVAEISSFQLETIEEFA----PKVSAILNITEDHLNRHHTME 210

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E    K  I +         LNY+D   E+L+     +  KT+Y     K  +       
Sbjct: 211 EYIRVKELIVKNQTAEDYCILNYED---EVLREFGRHIVPKTVYFSSVRKLDEGIYLDGD 267

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               ++  E      + E+   G       N    +   ++      +            
Sbjct: 268 LIVLKTADEEIPLVHTGELKLLGQH-----NFENVMAASAMAYYAGVSVENIRKSICAFT 322

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R    + +      ++S   NP +    I  +++ +    G            G  
Sbjct: 323 AVEHRIEYVMEKNGVAYYNDSKGTNPDAAIKGIQAMNRPTLLIGG------------GYD 370

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLV 442
             S + +         + ++ L G     +K+A  R         E ++           
Sbjct: 371 KGSSYDEWLNSFD-GKVRYLVLIGQTRDKIKEAAERLGVCPCILCENLEEAVKICAEKAN 429

Query: 443 DGDVVVV---KSS---------NSCGFYRLINLL 464
            GD V++    +S             F   +  L
Sbjct: 430 PGDAVLLSPACASWGQFDNYEQRGDMFKEYVRAL 463


>gi|84387794|ref|ZP_00990809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
 gi|84377309|gb|EAP94177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio splendidus 12B01]
          Length = 452

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 117/362 (32%), Gaps = 25/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          YA        +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G IF    
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPSNGRIFSPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  E + ++      +   S G+  + D +    K   + S  EV  Q + +       
Sbjct: 223 DTAIEDVLSRGCWSETE---SSGELGDWDAK----KLVKDGSKFEVYFQDECVG--TVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T               +R          ++ D+  + 
Sbjct: 274 DLVGDHNVSNALMAIAAARHVGVTPDLGCESLATFINTKRRLEFKGEVAGVSVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVW-- 405
                  AI +      +    +  +         + +  H + LA+ L   + ++++  
Sbjct: 334 -----PTAIELTLGGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQADSTYLFQP 388

Query: 406 -LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               + V  + DA       H S+ MD     I S    GD ++V  SN  GF  +   L
Sbjct: 389 DNIDWSVQDVADAC--HQPAHVSDDMDAFVARIVSEAQAGDQILV-MSNG-GFGGIHQKL 444

Query: 465 LE 466
           L+
Sbjct: 445 LD 446


>gi|282880603|ref|ZP_06289309.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305498|gb|EFA97552.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 457

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 101/368 (27%), Gaps = 44/368 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  L    R       +   G+ GKTTT  M    +              +      +  
Sbjct: 105 LGLLTRTHRG------LCFAGTHGKTTTSTMCAHIMHQSHVDCNAFLGGISKN--YGSNY 156

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D+ + E       E     H +RP ++VIT+  P HL  +   E    +     
Sbjct: 157 ILSDTSDYIVIEAD-----EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             ++  G + ++      E +           ++ +  +           +    ++  +
Sbjct: 212 TLIKPGGALIIHEGLEMQEDV------NNEVRVFRYSLNGGDFHAENIKIENGTITFDFI 265

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  +V          +N +  + +  +     +     +S +   + R        
Sbjct: 266 SPIENVTQVELGHPIPINVENAVAAMAMAQLNGCTAEELRYGMSTYKGVDRRFDFKVNNE 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
              F +           S K+   +          +          +   ++ F+ + AE
Sbjct: 326 RHVFLSDYAHHPKEIYQSAKSLRELYHDRHVTAIFQPH--------LYTRTRDFYKEFAE 377

Query: 395 VLSLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            LS   +  V L            G     + + L            + +   ++    D
Sbjct: 378 ALSQ--LDEVILCDIYPAREAPIPGVTSALIYNELTCKEKSMIH--KEDVIDLVKK--RD 431

Query: 444 GDVVVVKS 451
            DV+VV  
Sbjct: 432 FDVLVVLG 439


>gi|319425223|gb|ADV53297.1| UDP-N-acetylmuramate [Shewanella putrefaciens 200]
          Length = 464

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 118/360 (32%), Gaps = 18/360 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKT+T  ML      ++      G     +     ++    +  F + E   
Sbjct: 108 VLAVSGTHGKTSTSSMLA---WILEDCGYQPGFLIGGVPQNFGVSACLGESAFFVVEADE 164

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   VI  +   H   F+ +  I      +   +   G I    
Sbjct: 165 YDSAFFDKRSKFVHYHPRTLVINNLEFDHADIFADLAAIQKQFNHLIRTVPGEGKIIWPV 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    +           +  ++         +           +           +    
Sbjct: 225 DVQAVKQTIDMGCWSEQEHYHTAESITGWYGKALSDDCHC---FEVFFDGESQGVLEWDL 281

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H  +N +M +     +      AI+AL+ F P + R +          +    + + 
Sbjct: 282 IGQHNIENAIMAIAAARHVGVKPSAAIEALAQFIPPKRRLELLGTVNGISVY----DDFA 337

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++    + L  +       +I V+ +       S      LA  +   + + ++ +
Sbjct: 338 HHPTAI---ATTLKGMRAKVGQSKIIVVLEPRSNTMKSGVHKDTLAYSMMQADEAFLYQA 394

Query: 408 GFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 +K+A+  S I V     +D +   + ++   GD +VV  SN  GF  L   LL 
Sbjct: 395 DTIDWNMKEAMEASVIPVMVLHQIDEVVAKVAATAKPGDTIVV-MSNG-GFGGLHKKLLA 452


>gi|257867498|ref|ZP_05647151.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257873827|ref|ZP_05653480.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
 gi|257801554|gb|EEV30484.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC30]
 gi|257807991|gb|EEV36813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Enterococcus
           casseliflavus EC10]
          Length = 455

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 94/291 (32%), Gaps = 32/291 (10%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I      +RP IAVIT I  AH+       E   AK  + + +   
Sbjct: 167 DRLVMELSSFQLMGID----TLRPKIAVITNIYEAHIDYHGSRPEYVLAKWRLQQRMTAD 222

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N++    E L AK      + I    K K A   +       ++       +   
Sbjct: 223 DYLVINWNQPELEALSAK---SKAQIIPFSTKEKVAGAYMLDGILYYKE-------EVIM 272

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +     +   +AL  F     R    +  +      
Sbjct: 273 AADELGVPGDHNIENALAAIAVGKLCDMPNEAIKQALQTFTGVPHRT---QYVITINQVK 329

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+          +  ++ +L    + G            V +L  
Sbjct: 330 FFNDSKATNILATEMAL-------GGFDNEKLILLAGGLDRGNSFDDL------VPALKG 376

Query: 401 ISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  + L G     L  A   +    +  ++ ++       S    GD +++
Sbjct: 377 LKAIVLFGETKEKLAAAAQAAGVKTIEMTDNVETAVPLAFSLSAAGDTILL 427


>gi|16763516|ref|NP_459131.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|167989999|ref|ZP_02571099.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168243459|ref|ZP_02668391.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194448105|ref|YP_002044096.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197265563|ref|ZP_03165637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198243206|ref|YP_002214078.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205351465|ref|YP_002225266.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855640|ref|YP_002242291.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|30316095|sp|Q8ZRU4|MURD_SALTY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|16418625|gb|AAL19090.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406409|gb|ACF66628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197243818|gb|EDY26438.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197937722|gb|ACH75055.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205271246|emb|CAR36034.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205331455|gb|EDZ18219.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205337477|gb|EDZ24241.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|206707443|emb|CAR31716.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261245359|emb|CBG23148.1| D-glutamic acid adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991804|gb|ACY86689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301156754|emb|CBW16229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312911095|dbj|BAJ35069.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|323128446|gb|ADX15876.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326621822|gb|EGE28167.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326626492|gb|EGE32835.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332987079|gb|AEF06062.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 438

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 119/375 (31%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S        + +     
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRI----- 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPRVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|86148538|ref|ZP_01066825.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
 gi|85833684|gb|EAQ51855.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio sp.
           MED222]
          Length = 438

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 127/369 (34%), Gaps = 51/369 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +             +IG+P           + + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNV----GVGGNIGIPALDLLELDADLY-VLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF            
Sbjct: 162 LSSFQL----ETTFSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNN---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +       +++     ++ +FG     D Q           W+    +         
Sbjct: 208 AQCAIVNREDKETYPDQTMSLVTFGL----DDQEFGVATIDGIEWLIDNGKPVLPSQDLT 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L++L ++  +  D   +++AL  ++    R    +   ++     +++S 
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYSKSLEALKAYNGLTHRC---QVVADKREIKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       +G    ++G + +  + S     +L  VL+  +   +  
Sbjct: 321 ATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELNPVLAQLDRVQLCC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        ++M  +   I + LV GD+V++    +S           
Sbjct: 371 FGEDA---AQFMPLHPSAKTFDSMRDIIESISAQLVSGDMVMLSPACASFDQFNNFMARG 427

Query: 455 CGFYRLINL 463
             F  L + 
Sbjct: 428 DAFTELAHE 436


>gi|313891497|ref|ZP_07825110.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
 gi|313120074|gb|EFR43253.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister microaerophilus
           UPII 345-E]
          Length = 463

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 144/426 (33%), Gaps = 59/426 (13%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGA 94
           E F         GH+     ++  A +++V+T +  +           IPVF   D+L A
Sbjct: 53  EIFV--------GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDLLAA 101

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +               I + G+ GK+TT  M+       +K    +              
Sbjct: 102 IL---------CGGKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLGGKVDY------- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +  FG  E  ++   E         P I+VIT I   HL ++  +E I +A  +  
Sbjct: 146 -LNGNSIFGNGEFVIAEADESDGSFLKFNPFISVITNIEDDHLDHYLTVENIKNAFIKFI 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +K     +   D+  E +K+    L   +  ++G S NA+++    +        +V
Sbjct: 205 NQTDKINGNTILCIDN--EGVKSILPKLDKNSYITYGTSDNAEYKAINKRYIDSHMMFDV 262

Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +      V     G H  +N L  L    I   D  T  K+L  F+  +      R  
Sbjct: 263 YHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIAKSLMEFNGVKR-----RFQ 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +       I + Y  +P  + + +    +      G+   +          +     + A
Sbjct: 318 IKYSGEVKIVDDYAHHPTEIMSTLKAAKEC-----GKHRVICAFQPHRYSRTNLLKYEFA 372

Query: 394 EVLSLYNI---SHVWLSGF------HVLALKDALPRS---IHVHYSETMDGLFLFIQSSL 441
                 +I   + ++ +G           L D +        + Y + M+ L   I++ +
Sbjct: 373 NAFDNADIIFITDIYSAGEKPVNGISGKTLVDLIKEKHPTKKITYIKNMEDLPEAIKNEM 432

Query: 442 VDGDVV 447
              D++
Sbjct: 433 QKDDMI 438


>gi|282600178|ref|ZP_05973287.2| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
 gi|282566125|gb|EFB71660.1| UDP-N-acetylmuramate--alanine ligase [Providencia rustigianii DSM
           4541]
          Length = 472

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 76/426 (17%), Positives = 143/426 (33%), Gaps = 51/426 (11%)

Query: 65  AGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV      +   + +   L IPV        A   LA   R R     IA+ G+ G
Sbjct: 64  ASVVVVSTAISMDNPEIQAAKELRIPVI-----RRA-EMLAELMRYRHG---IAVAGTHG 114

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 115 KTTTTAMISGIYAQAGLDPTFVNGGLVKS---AGTHARLGSSRYLIAEADESDASFLH-- 169

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +AV+T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 170 ---LQPLVAVVTNIEADHMDTYQGNFENLTDTFINFLHNLPFYGRAVMCIDDPVIRSLLP 226

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           K      + I ++G S++AD ++ K+ Q      +   +     + VV +  G H A N 
Sbjct: 227 KI----GRYITTYGFSEDADVRITKYTQKGNQGFFTIAREGMPELTVVLNAPGRHNALNA 282

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +    D    + AL  F     R         R    +    ++ + Y  +P 
Sbjct: 283 TAAVAVATEEGIDDLHILSALVEFQGTGRRFDFLGNYALRNVNGKEGEVMLVDDYGHHPT 342

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSG 408
            + A I      +   + R + +          ++  + D A VL   ++     V+ +G
Sbjct: 343 EVDATIKAAR--AGWPDKRIVMIFQPHRY--TRTRDLYDDFANVLGQVDVLLMLEVYSAG 398

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
                     +L   +     V   +    + +   +   L   D+++V+ + + G  ++
Sbjct: 399 EKPVPGADSRSLCRTIRSRGQVDPIFVAEPEQVSHMLAQVLDGNDLILVQGAGNIG--KI 456

Query: 461 INLLLE 466
              L E
Sbjct: 457 AKSLAE 462


>gi|315656828|ref|ZP_07909715.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
 gi|315492783|gb|EFU82387.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii subsp. holmesii ATCC 35242]
          Length = 495

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 70/436 (16%), Positives = 129/436 (29%), Gaps = 49/436 (11%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD-VLGALNKLAVAARLRSKATIIAITGS 116
             A  KG  L +V+  +        +P   V       L      A        + ITG+
Sbjct: 68  EAAAAKGHKLFIVSPGIAPHNPLYRLPEASVPMWSEVELAWQIQEAIGNRNCKWLCITGT 127

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML   L +       + +   + G P+        VD    EL  + L    
Sbjct: 128 NGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVAAEGAVDALAVELSSAQLH--- 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---------GTIFLNY 227
             T+ ++P  +V    AP H+      +E A  K++++ G+++           T  L+ 
Sbjct: 181 -STYSLKPWASVWLNFAPDHIDWHGSADEYAWDKSKVYCGVQRAALYPATEELPTKVLSK 239

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                +    +        I + G     +  +             ++L   +      G
Sbjct: 240 RFVQEQGFPVEKCIGLTPGIPTPGFLGVIEDVIVDRAFGENNETQALELATFADLEHLSG 299

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                +  +  TL    +  +     +         E    R          T ID+S  
Sbjct: 300 AKTPTSALLADTLAAAGLARSYGLQPVWVRRGIREFELANHRRAVVGTFEGVTYIDDSKA 359

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +  A++  ++      +     V GD        Q FH  +        +    L 
Sbjct: 360 TNTHAAAASLRDIAD-----KRAVWIVGGD-----AKGQDFHSLV--QAVAPKVKAAVLI 407

Query: 408 GFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV---KSS----- 452
           G      + A   +      +        M+      ++  V GD V++    +S     
Sbjct: 408 GLDPEPFESAFAENGAGIPVKRVAPGDNLMERTLNEARALAVSGDTVLLAPACASWDQFN 467

Query: 453 ----NSCGFYRLINLL 464
                   F ++   L
Sbjct: 468 NYHERGDQFAQVARRL 483


>gi|307262595|ref|ZP_07544225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|306872018|gb|EFN03732.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 244

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/105 (10%), Positives = 27/105 (25%), Gaps = 15/105 (14%)

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH------- 410
             L     H EG    + G     G    +    +   ++      V  +  +       
Sbjct: 120 KALQAARLHTEGELYCIFG----CGGDRDAGKRPMMAAIAEELADKVIATDDNPRTEDNA 175

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  + +   +   V      +           + DV+++  K 
Sbjct: 176 KIMADILNGFVQVEKVQVIHDREQAIKTAIEQANEKDVILIAGKG 220


>gi|264680224|ref|YP_003280134.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
 gi|262210740|gb|ACY34838.1| UDP-N-acetylmuramate [Comamonas testosteroni CNB-2]
          Length = 472

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/425 (13%), Positives = 111/425 (26%), Gaps = 46/425 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGAL----NKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VV+   +         +  + D   A       LA          ++A+ G+ GKTTT  
Sbjct: 70  VVSRKRLPDGSPKFPLMEAILDTGAAYTSGPQWLAEHVLR--GRHVLAVAGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYAC-IGSYNNHIGV---------PLTLARMPVDVDFGIFELGMSHLGE 174
           MLT  L          +G      GV         P        D    + E        
Sbjct: 128 MLTWVLECAGLQPGFLVGGVPLDFGVSARLGAAQRPAAGPGPVGDEPVFVIEADEYDTAF 187

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                     RP  AV+  +   H   F  +  I      +   +  TG +  N  +   
Sbjct: 188 FDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHLIRTVPSTGRVVSNGLEESL 247

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW--MEVQLQGKSMEVVHHGIGY 290
             + A+     +++  S     +AD     +                      ++     
Sbjct: 248 TRVLAQGCWSEVRSFGSAVSDFSADGDPSDFAVLHRGRKVAQLRWSLTGVHNQLNALAAI 307

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A ++ ++  +     +      + + +     G       A +        +      
Sbjct: 308 AAADHLGVSAEVACEALSRFQNVKRRMELRGTVNGIEVYDDFAHHPTAIRTTLDGLRRKL 367

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--SG 408
            +          ++          LG M      S              +   V+   +G
Sbjct: 368 GA------EARILAVFEPRSNTMKLGTMKSQLPWSLE------------SADLVFCHTAG 409

Query: 409 FHVLALKD----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
               A +      +        +  ++ L   I + +  GD + V  SN  GF  +   L
Sbjct: 410 LDWDAAEALESMGVGPGQRAQVAGDIETLIAQISAVVRPGDHI-VCMSNG-GFGGIHAKL 467

Query: 465 LEEFP 469
           L+   
Sbjct: 468 LQALK 472


>gi|108804332|ref|YP_644269.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
 gi|118595689|sp|Q1AVX1|MURD_RUBXD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|108765575|gb|ABG04457.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 440

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 106/368 (28%), Gaps = 53/368 (14%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            + A+TG+ GKTT  +M    L      +A  G+    +                + E+ 
Sbjct: 103 RVAAVTGTNGKTTVVDMARHILRVAGVAHAVAGNSWRALT---GCLEEVRRAGVLVLEVS 159

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L  +          +A +  + P HL+  S  EE A  K  +F G        L+ D
Sbjct: 160 SFQLHHL----PPPGFEVAALLNVRPDHLNWHSSFEEYARDKLRVFGGQGPGDLALLSAD 215

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-KWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D      +A         +   G++   D +L  + +  + +  +           +   
Sbjct: 216 DPICR--RAAGGLRAEVVLVGEGETGVRDGRLLLRGEFLAGERELGFAGGHNLKNALFAA 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                    L  +                         +  R +    +G  T ID+S  
Sbjct: 274 AAAARLGAGLEAIREAL----------------RGYRLKPHRMQVVAEEGGVTYIDDSKA 317

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N        +V + +   G    + +LG     G   ++   ++   L       V   
Sbjct: 318 TN------PAAVAAALLSLGGRPAVLILG-----GSEKETDFEEVLPHL--GGCRAVVCQ 364

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
           G     L+D L       V  +  +       +     GD V++    +S          
Sbjct: 365 GEAGPRLRDFLSERWGGEVVLAGDLASAVEAARRLARPGDAVLLSPGCASFDQFSGYEER 424

Query: 454 SCGFYRLI 461
              F RL 
Sbjct: 425 GEAFARLA 432


>gi|86516458|gb|ABC97910.1| MurD [Shigella dysenteriae]
 gi|86516461|gb|ABC97912.1| MurD [Shigella dysenteriae]
 gi|86516464|gb|ABC97914.1| MurD [Shigella dysenteriae]
 gi|86516467|gb|ABC97916.1| MurD [Shigella dysenteriae]
 gi|86516470|gb|ABC97918.1| MurD [Shigella dysenteriae]
 gi|86516473|gb|ABC97920.1| MurD [Shigella dysenteriae]
 gi|86516476|gb|ABC97922.1| MurD [Shigella dysenteriae]
 gi|86516479|gb|ABC97924.1| MurD [Shigella dysenteriae]
 gi|86516482|gb|ABC97926.1| MurD [Shigella dysenteriae]
 gi|86516485|gb|ABC97928.1| MurD [Shigella boydii]
 gi|86516491|gb|ABC97932.1| MurD [Shigella dysenteriae]
 gi|86516494|gb|ABC97934.1| MurD [Shigella boydii]
 gi|86516497|gb|ABC97936.1| MurD [Shigella boydii]
 gi|86516500|gb|ABC97938.1| MurD [Shigella boydii]
 gi|86516503|gb|ABC97940.1| MurD [Shigella boydii]
 gi|86516506|gb|ABC97942.1| MurD [Shigella boydii]
 gi|86516509|gb|ABC97944.1| MurD [Shigella boydii]
 gi|86516512|gb|ABC97946.1| MurD [Shigella flexneri]
 gi|86516524|gb|ABC97954.1| MurD [Escherichia coli]
          Length = 154

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L       +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LA  L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LARYLNGDNV-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV---KSS---------NSCGFYRLINLL 464
           V++    +S             F RL   L
Sbjct: 124 VLLSPACASLDQFKNFEQRGNEFARLAKEL 153


>gi|317493603|ref|ZP_07952024.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918546|gb|EFV39884.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 459

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 112/365 (30%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+T  L         +       GVP          +  F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEECGYEPGFVIG-----GVPGNFDVSARMGNSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I  
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIS 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D+  + + A          +S  +    D      K   + S+ EV L G  +  V 
Sbjct: 220 PASDANLKQVMA-------MGCWSEQELSGEDGTWNARKLNPDASYFEVLLDGDVVGEV- 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G     NM   L  ++           A           +R           + D+ 
Sbjct: 272 -NWGLVGEHNMHNGLMAIAAARHVGVLPADACRALDSFINARRRLELRGEAFGVKVYDDF 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
            +   A     ++ LS +     G    +   + E    +    +   ++         V
Sbjct: 331 AHHPTA----ILATLSALRSKVGGTARIL--AVLEPRSNTMKMGVSKNDLAPALGRADEV 384

Query: 405 WLSGFH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L   H +  L   +  +     H+S  +D L   I  +   GD ++V  SN  GF  + 
Sbjct: 385 FLFQPHHIPWLVTEVAEACVQPAHWSADIDVLVDMIAKTAQPGDYILV-MSNG-GFEGIH 442

Query: 462 NLLLE 466
           + LL+
Sbjct: 443 SKLLK 447


>gi|302872762|ref|YP_003841398.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575621|gb|ADL43412.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 455

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 110/361 (30%), Gaps = 26/361 (7%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI+G+ GKTTT  M+   L                    L+
Sbjct: 92  EFLGLLMKDFKN-----VIAISGTHGKTTTTSMIGYILKKANYN---PTVLVGAFVKQLS 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKEYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G +  N DD   + + ++ +   I           AD           +  +
Sbjct: 199 FAQKISTSGFLVANCDDKNVKDIISQLNTQIICISTKEKTDIFADNISCIDGYY--EFDV 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + +       +  +  G+H   N L    + S L  +  T   A+S F     R ++   
Sbjct: 257 KNKDDETLAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEHAISEFCGASRRLEKVGE 316

Query: 333 ALNQGFFTLIDESYNANPASMKA-----AISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +           AS+          V +   PH   R   +L +  E   L+  
Sbjct: 317 FDGIYLYDDYAHHPTEIKASLNTLKKLSQGKVFAIFQPHTFSRLKNLLNEFAESLSLADK 376

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             +         N       G     L   L    +   Y  + + +  ++      GD+
Sbjct: 377 VIVTDVYAAREKN-----TFGITSENLYLKLKEIGVDCEYISSFEDIASYVIKEAKKGDI 431

Query: 447 V 447
           +
Sbjct: 432 I 432


>gi|312880220|ref|ZP_07740020.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
 gi|310783511|gb|EFQ23909.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Aminomonas
           paucivorans DSM 12260]
          Length = 462

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 115/378 (30%), Gaps = 44/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            + +++ +TGS GKTTT  ++   L           S   +IG P   + +  + ++ + 
Sbjct: 107 LRGSLLGVTGSNGKTTTTSLIGHLLREEGVRV----SVAGNIGNP-LASAVREEAEWVVA 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L   R L    R  +AV+T +AP H+      E    AKA +   L+ T  + +
Sbjct: 162 ELSSFQLHWARRL----RCSLAVVTNLAPDHIDWHGSYEAYVDAKANLVRALDPTTGMAI 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                   L           T    G+         + +       +  +       +  
Sbjct: 218 VQRSELPLLPPVSQTIPLSWTEDGEGEEGGVTLIRSRREALLSFPGLGKRRLFSFDALSL 277

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G        M  T   + +  A             P        +     G    +D+S
Sbjct: 278 LGDHNLENAAMAATATTLVLKDAPKHVEEALTRFVAPPHR----CQLVRELGKVRFVDDS 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N A+   A++ L        G ++ +LG   + GE   S    + E           
Sbjct: 334 KGTNVAATMTALTSL-------PGTKVILLGGQGK-GESYGSLAKAVTEWARFA-----V 380

Query: 406 LSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVVKSS----------- 452
           L G     +  AL  + +  +    +++            GD V++  S           
Sbjct: 381 LFGEEGERIGKALDDAGYHRWSLVRSLNEAVPLAYDKAEAGDSVLL--SPACTSWDQYRN 438

Query: 453 ---NSCGFYRLINLLLEE 467
                  F  L   L E 
Sbjct: 439 YKERGDHFRDLACSLKER 456


>gi|195941973|ref|ZP_03087355.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia burgdorferi 80a]
 gi|224532449|ref|ZP_03673075.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512621|gb|EEF82996.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 468

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|50122736|ref|YP_051903.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
 gi|59798236|sp|Q6D0I4|MURC_ERWCT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49613262|emb|CAG76713.1| UDP-N-acetylmuramate--L-alanine ligase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 486

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 75/411 (18%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++ + A    +       IPV        A   LA   R R     IAI G+ G
Sbjct: 79  ASVVVVSSAITADNPEIVAAHDARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+T   +        +                     + I E   S    +   
Sbjct: 130 KTTTTAMVTSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD+    L  
Sbjct: 185 ---LQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGQAVMCIDDAVIRELLP 241

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD ++  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 242 RV----GRHITTYGFSDDADVRVAGYRQTGAQGHFTLERKDKTLLNVTLNAPGRHNALNA 297

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    D +  ++AL  F     R              Q    ++ + Y  +P 
Sbjct: 298 AAAVAVATDEGIDDEAILRALERFQGTSRRFDFLGEYPLELVNGQSGTAMLVDDYGHHPT 357

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I       P        V+         ++  + D A VLS  ++     V+ +G
Sbjct: 358 EVDATIKAARAGWPDK----RLVMIFQPHRYTRTRDLYDDFAHVLSQVDVLLMLDVYSAG 413

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     +       MD L   +  +L   D+++V+ 
Sbjct: 414 ESPIPGADSRSLCRTIRGRGKIDPILVTDMDTLPELLSQALRGEDLILVQG 464


>gi|224532317|ref|ZP_03672949.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
 gi|224511782|gb|EEF82188.1| UDP-N-acetylmuramate--alanine ligase [Borrelia valaisiana VS116]
          Length = 468

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 128/384 (33%), Gaps = 37/384 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L I  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGIVFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FGGNSAIAGISNIFIVETCEYKKHFLHFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +  +     I+SFG    +
Sbjct: 196 VDFFKNYESLEDAFLQYINNLKKNGILIINSDDNNLLKI-KRQISRKDINIFSFGSRDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +FQ+      +E              + V      + +  +L     +      +     
Sbjct: 255 NFQISNIVVKNEYFCFSFLGLHNVELKTVLFHNILNFSAALLALNLFLESNGKSIFDFED 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  ++  +  +     +       +L
Sbjct: 315 AVKRIAKNYSGIKRRVEVIKEEKGVVYMDDYAHHPREIRDTLLGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------------GFHVLALKDALPR-SI 422
             M      ++ F  D  EVL   ++  + L                 + L   + + + 
Sbjct: 371 DFMPHTFTRTKEFFDDFVEVL--SDVDILILHNIYLSNRENFNPDELSINLFLNIKKINE 428

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV 446
           + ++ + +     FI+S LV GD+
Sbjct: 429 NTYFFKDVKDSINFIKSLLVSGDL 452


>gi|23098924|ref|NP_692390.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Oceanobacillus iheyensis HTE831]
 gi|30316035|sp|Q8ER50|MURD_OCEIH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|22777152|dbj|BAC13425.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oceanobacillus
           iheyensis HTE831]
          Length = 449

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 111/345 (32%), Gaps = 35/345 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I ITGS GKTTT  ++T  L     +    G+      V   +A      +  + E
Sbjct: 110 NQPVIGITGSNGKTTTTTLITEMLDRSNVSVKVAGNIGV---VATEVASSLQSDEKMVME 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I      ++   AV+  +  AHL      E    AK  IF+   K   +  N
Sbjct: 167 LSSFQLQGID----QLQFSTAVLLNLFEAHLDYHGSFENYVEAKCNIFKSQNKHDYLIYN 222

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD         + A  +    S         +        +  ++  + +         
Sbjct: 223 ADDDNVSAAIKTAEATKVPFSSS---------RPLADGAWMDDDFLYYKDEKIIAIRDIV 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H  +N+L  +    +  A  +  ++ L+ F        R           + ++S 
Sbjct: 274 LVGKHNMENILAAIATAKLNGATNEGIVQVLTTFSGV---KHRLEFVGVINGRYIYNDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  + K A++  ++      G            G    +   +L   L  +++  + +
Sbjct: 331 ATNILATKKALAAFNKNVVLLAG------------GLDRGNTFEELIPYL--HHVKAMVV 376

Query: 407 SGFHVLALKDA--LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     LKDA        +  +  +        +   + D +++
Sbjct: 377 FGETAGKLKDAGVAANIPVIEKALDVQHAVEVAFALTDEQDTILL 421


>gi|268318240|ref|YP_003291959.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262335774|gb|ACY49571.1| UDP-N-acetylmuramate/alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 479

 Score = 51.0 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 73/434 (16%), Positives = 146/434 (33%), Gaps = 61/434 (14%)

Query: 67  LVVVNTDMVASIGSLSIPVFGV-------DDVLGALNK----------LAVAARLRSKAT 109
            VV        +G   + V+          + L AL +          L    R++    
Sbjct: 62  AVVYEGHRPEHVGDADVVVYSSAVRPQENPETLEALRRRIPLIPRAEMLGELMRMKFG-- 119

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I + G+ GKTTT  M+ + +S        I               +  + D  + E   
Sbjct: 120 -IGVAGTHGKTTTTSMVGLVVSEGGFDPTIIVGGKVA---AFESNAVAGEGDIIVIEAD- 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       + P +AV+T+I P HL  +  ++++ +A  +    +   G   L  DD
Sbjct: 175 ----EYDRTFLRLTPTLAVVTSIEPEHLDIYRDLDDLMAAFRQFASSVPFFGAAILCLDD 230

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
              + L  +      + + ++G ++ A+ +    +     S  +V LQG+    +     
Sbjct: 231 PNVQALVGQL----DRRVRTYGLARQAEIRAENVQFEGFGSRFDVLLQGEPLGTIQLQVP 286

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H  +N L  + +   L    +     L+ F     R +     L +    L+ + Y  
Sbjct: 287 GLHNVRNALAAVAVGLELDIPFEAIQAGLARFTGVRRRFE----RLGEVHGVLVIDDYAH 342

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVW 405
           +P  ++A +   +   P        V      +   ++ F  D A      ++   + V+
Sbjct: 343 HPTEIRATLEAAATAMPDR----RLVAVFQPHLYSRTRDFQEDFARSFVDADVLVVTDVY 398

Query: 406 ---------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-LVDGDVVVVKSS--- 452
                    ++G  +  L         VHY      +  ++    L  GD V+   +   
Sbjct: 399 GAREAPIPGITGERIAELARRF-GHRDVHYVPERRQIPGYLLEHVLRPGDAVLFMGAGDI 457

Query: 453 -NSCGFYRLINLLL 465
             +     L++ L 
Sbjct: 458 WRAAR--ELLDYLK 469


>gi|308070406|ref|YP_003872011.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
 gi|305859685|gb|ADM71473.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
           [Paenibacillus polymyxa E681]
          Length = 459

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 69/398 (17%), Positives = 123/398 (30%), Gaps = 35/398 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA +VV +T +                 L     LA   RL ++   IA+ G+ GKTTT
Sbjct: 62  AGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLA---RLLNERKGIAVAGAHGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+ + +         I               +  +   G  E  ++   E        
Sbjct: 119 SSMIALVMERCNVDPTYIIGGEI--------TNLGTNAKAGKSEFVVAEADESDGSFLQY 170

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   ++T I   HL N+ G      +    F    +     +   D        +    
Sbjct: 171 HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIVCADDQN---IREMLPQ 227

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + ++G    AD+     +    + S+   +       +     G H   N + T+ 
Sbjct: 228 LQTRVITYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIELSVPGKHNMYNAMATVI 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-- 359
                    D     +  FH  + R +     L +    LI + Y  +P  ++A IS   
Sbjct: 288 SCLEAGIPFDQIAATIVEFHGAKRRFQ----VLGESNDILIIDDYAHHPTEIEATISAAR 343

Query: 360 ------LSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                 ++   P    R   +L        E S+    D+        I      G H  
Sbjct: 344 ATGKRIIAVFQPQRYSRTFFLLDAFSRAFSEASEVIITDIYSPAGEKQIE-----GVHSS 398

Query: 413 ALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L D +    + +  Y  T + +   ++  L  GD+V+
Sbjct: 399 KLVDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVL 436


>gi|283456401|ref|YP_003360965.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium dentium Bd1]
 gi|283103035|gb|ADB10141.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Bifidobacterium dentium Bd1]
          Length = 281

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 5   WTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T   L              +  V  ++ D  SI P   F    G   D    ++ A Q 
Sbjct: 1   MTLGHLASQYGFDLDPSFASEVTVTSLADDIDSIRPGALFV--PGADVDVRQ-LVQAQQL 57

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKTT 121
           GA   +V   M   I  L IP+   +     L KLA            + AI GS  ++ 
Sbjct: 58  GAYGAIVPHAMRGEIQDLQIPLIYAEPTAQQLGKLACDIAGAPSDVLAVFAIIGSDRESV 117


>gi|222112151|ref|YP_002554415.1| UDP-N-acetylmuramoyl-l-alanyl-d-glutamate synthetase [Acidovorax
           ebreus TPSY]
 gi|221731595|gb|ACM34415.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax ebreus
           TPSY]
          Length = 632

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 109/397 (27%), Gaps = 26/397 (6%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGSVGKTTTKEML 126
           +   ++   + +       V+  LG   +     R        ++AITG+ GKTT   + 
Sbjct: 206 LSPNEIAPVVIAARARQISVEGELGLYAQALRELRAGQGYAPAVLAITGTNGKTTVTSLT 265

Query: 127 TIALSSIKKTYACIGSYN-NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
            + +    K  A  G+     +             +  + EL    L           P 
Sbjct: 266 GLLVECADKRVAVAGNIGPTLLDTLAQHIDAGTLPEVWVLELSSFQLD----GVQGFEPT 321

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF--ELLKAKSHALG 243
            A +  I   HL     ++  A AK  IF           + +        ++ K     
Sbjct: 322 AAAVLNITQDHLDWHGSLQAYAQAKGRIFGETGLMVLNREDAEVMALLPPPVRVKLQKPQ 381

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           ++   +FG            +  S  +W+    +              +    LM    +
Sbjct: 382 LRAHVTFGGDMPQRPGDFGIEVVSGMAWLVRAHEADETAKRGKAQDAELHIQRLMPADAL 441

Query: 304 SILTADVDTAIKALSVFHPKEG----------RGKRYRCALNQGFFTLIDESYNANPASM 353
            I          A        G          R  R      +    + +  Y  +    
Sbjct: 442 RIRGRHNAINALAALALAQAAGCPLAPMLYGLREYRGEPHRVEPVGIVREVEYFDDSKGT 501

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +V +      + R + +LG   +  + S      +A          V L G     
Sbjct: 502 NVGATVAALTGLGADRRLVVILGGDGKGQDFSP-LAAPVARYARA-----VVLIGRDAPQ 555

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ AL    + +  + T+             GD V++
Sbjct: 556 IRAALQGCGVPLQDAATLPEAVQLATQRAHVGDAVLL 592


>gi|120555362|ref|YP_959713.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
 gi|189028998|sp|A1U3F7|MURC_MARAV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120325211|gb|ABM19526.1| UDP-N-acetylmuramate--L-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 481

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 126/393 (32%), Gaps = 42/393 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V S     +P+         +  LA   R R     IA+ G+ GKTTT  ++   L
Sbjct: 91  DNPEVVSARERRVPIV----PRAEM--LAEIMRYRHG---IAVAGTHGKTTTTSLIASVL 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    +     +               + + E   S    +        P I+V+T
Sbjct: 142 GEAGLDPTFVIGGKLNS---AGTNAQLGGSRYLVAEADESDASFLHLT-----PVISVVT 193

Query: 191 TIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +   +E++     +    L   G   +  DD + + +  +        I  
Sbjct: 194 NIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDDYVQEIIPRISRA---IITY 250

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQ--GKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
              + +AD++         ++   V+       ++V     G H   N L T+ + +   
Sbjct: 251 GIDNPDADYRAENITSDGLKTRFLVRRPGGRPDLQVELKMPGRHNVLNALATIAVATDEG 310

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     + L+ F     R + Y           + + Y  +P  ++A I    +  P  
Sbjct: 311 VDDQAICRGLAGFAGVGRRFQVYGEYRTPKAAATLVDDYGHHPTEVEAVIRAAREAWPQR 370

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKD 416
                 V+         ++  + D   VLS   +  + L            G    AL  
Sbjct: 371 ----RIVMLYQPHRYTRTRDLYEDFVRVLSE--VDGLLLMDVYSAGEPAIPGADGRALCR 424

Query: 417 ALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           ++ +   V   + E    +   + + L DGD++
Sbjct: 425 SIRQRGKVEPVFVEDNREIESLLANVLQDGDLL 457


>gi|77462655|ref|YP_352159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
 gi|122063256|sp|Q3J4M6|MURD_RHOS4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77387073|gb|ABA78258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 465

 Score = 51.0 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 117/395 (29%), Gaps = 35/395 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAIT 114
             ++V +  +  +     PV            +D+       A            ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +          +IG  +       D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGR----PTQMAGNIGRGVLDLDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F        +    +     L
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLYL 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A     +      +  +                 + +  +   +    G   A 
Sbjct: 239 AGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLPGAH 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +          +  +      G   R +    +G    +++S   N  S  
Sbjct: 299 NHQNACAAYAACRTMGLAPRQIEAALASFAGLPHRSQTVGEKGGVRFVNDSKATNVDSAA 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+    +I     G     LG   + G ++   H  L  V+        +L G      
Sbjct: 359 KALQAFPKIRWIAGG-----LG--KDGGIVALQPH--LGSVVKA------YLIGHSARDF 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + H    ETM+            G+VV++
Sbjct: 404 ALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|270159563|ref|ZP_06188219.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|289165641|ref|YP_003455779.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
 gi|269987902|gb|EEZ94157.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Legionella longbeachae D-4968]
 gi|288858814|emb|CBJ12728.1| putative UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Legionella longbeachae NSW150]
          Length = 454

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 124/375 (33%), Gaps = 27/375 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA     + +  +IA++G+ GKTTT  M+   L         +    +        + 
Sbjct: 93  QWLAENILSKFQ--VIAVSGTHGKTTTTSMIAWILHQAGLNPGFLIGGVSSD---FKTSA 147

Query: 156 MPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                 + + E     S   + R      RP IA++  +   H   ++ +  I       
Sbjct: 148 CLGSGKWFVIEADEYDSAFFDKRPKFMHYRPRIAILNNLEFDHADIYTDLAAIQLQFHYF 207

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +  +G       D     + A+     I+ +   G ++ +   L         ++  
Sbjct: 208 LRTIPASGVAIKPCHDQALNEVIARGQYSRIEELSLDGDAQWSAKLLEDN----GSAFKV 263

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           + L  +  +V    IG    +N L  L          + A +AL  F P + R +     
Sbjct: 264 LYLGKEVAKVNWPLIGRFNVENGLAALAASVNAGVSPEVAARALERFTPVKRRLE----V 319

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD--MCEMGELSQSFHID 391
            +      + + +  +P +++  +  L   + H     +       M      ++  H  
Sbjct: 320 RSNMHGITVYDDFAHHPTAIRRTVDALKGSNRHQRIFAVLEFASYTMRTGVHATEMAH-- 377

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                +L ++   ++       L   L   +      ++ D +   +  ++  GD V+V 
Sbjct: 378 -----ALESVHGAYVLEPQDFDLHKTLDHWTCPYTICKSHDEIVNEVSKAVQAGDAVLV- 431

Query: 451 SSNSCGFYRLINLLL 465
            SN  GF  +   L+
Sbjct: 432 MSNR-GFNGIHQKLI 445


>gi|168209731|ref|ZP_02635356.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712111|gb|EDT24293.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens B
           str. ATCC 3626]
          Length = 457

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYEINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|32266840|ref|NP_860872.1| hypothetical protein HH1341 [Helicobacter hepaticus ATCC 51449]
 gi|32262892|gb|AAP77938.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 347

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +++++  +G  +        + I  D   +   + F A      D    +  AV  G
Sbjct: 1   MRVNEVVEITKGKLLTTPSIAEFSRIICDVERVQKGDLFIA-----KDIAQ-VPQAVAMG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++     + +I    +    V+D+   L +L     L    T I++
Sbjct: 55  AYGIIC--ANIHNINDGELAWIMVEDLQDCLTRLIRYKLLAKNITTISL 101


>gi|229528610|ref|ZP_04418000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
 gi|229332384|gb|EEN97870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           12129(1)]
          Length = 467

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 127 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 178

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 179 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E       +           +    G++    F              Q   + ++  + 
Sbjct: 235 AETAVVNAYDTQTFPDHAAHLQVVTFGVEQAAQFSL-----------AQHQGREYLFARD 283

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +          +G H   N+L  L ++     +   A+ AL  +     R    +   + 
Sbjct: 284 EAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRC---QVVADN 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 341 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 390

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 391 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|103487367|ref|YP_616928.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
 gi|118595694|sp|Q1GRX7|MURD_SPHAL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|98977444|gb|ABF53595.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingopyxis
           alaskensis RB2256]
          Length = 434

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 62/440 (14%), Positives = 121/440 (27%), Gaps = 86/440 (19%)

Query: 58  LHAVQKGA-------------GLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNK 97
             A+  GA               VVV+         + A      +PV G  D+     +
Sbjct: 46  DAAMALGADIGNPLDIDLIGFAGVVVSPGVPLNRHPIAAHARDAHVPVIG--DI-----E 98

Query: 98  LAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           L   AR       ++ ITG+ GK+T   ++   L S             +IG+P+     
Sbjct: 99  LFAEARSELPPHKVVGITGTNGKSTVTALIAHMLESAGV----PVLMGGNIGLPILTREP 154

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +    + EL    +     L       +AV+T I+P HL  + G E   ++KA +F  
Sbjct: 155 LPEAGVYVLELSSFQIDLAHSLAC----DVAVLTNISPDHLDRYDGFEGYVASKARLFSL 210

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             +     +  DD   +++ ++                                   V  
Sbjct: 211 QHRDQVAIIATDDDPSKMIASRV----------------------------NHRLHRVSA 242

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +                 N    +  ++                        R       
Sbjct: 243 KDIDPVDQARWPALQGPHNAQNAVCAIAACRVLGLDDEAIERGLATFRSLPHRMELVGEA 302

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N A   AA ++ +      +       G     G  +           
Sbjct: 303 RGARWYNDSKATNAA--SAAPALAAFPPAPDQRLHWIAGGQAKGDGLAACRPWF------ 354

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS- 452
              ++   +L G  +      +  +I +  S  +        +++  GD+V++    +S 
Sbjct: 355 --GHVKRAYLIGEAMAPFAAEIGDAIAIERSGDLASAVAQAAAAVQPGDIVLLSPACASF 412

Query: 453 --------NSCGFYRLINLL 464
                       F   +  L
Sbjct: 413 DQFKDYEARGEAFRAAVEAL 432


>gi|169343255|ref|ZP_02864266.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
 gi|169298553|gb|EDS80634.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens C
           str. JGS1495]
          Length = 457

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKNINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|146276746|ref|YP_001166905.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
 gi|166224720|sp|A4WQD6|MURC_RHOS5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145554987|gb|ABP69600.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 470

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 71/404 (17%), Positives = 121/404 (29%), Gaps = 46/404 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV     V  A   LA   RLRS    IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARRRGLPV-----VRRA-EMLAELMRLRSN---IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  +             ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDK---GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHPEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     I T     ++     + +        + +            +     G H   
Sbjct: 232 GRVTDRRIVTFGFNAQADVRAINLRYENGTAHFDVALQGEGEGHLIEGMTLPMPGDHNVS 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D   +AL+ F     R  +            I + Y  +P  + 
Sbjct: 292 NALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVGG----VTIIDDYGHHPVEIA 347

Query: 355 AAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +    Q           PH   R   +  D C     +     D+  +  +Y      
Sbjct: 348 AVLRAARQAVKGRVIAVHQPHRYSRLHTLFDDFCTCFNEA-----DVVAIAEVYAAGETP 402

Query: 406 LSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVV 447
           ++G     L   L    H H    +  D L   ++     GD+V
Sbjct: 403 IAGASRDDLVAGLIAHGHRHARAILCEDDLERLVREQARPGDMV 446


>gi|225571175|ref|ZP_03780173.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
 gi|225160006|gb|EEG72625.1| hypothetical protein CLOHYLEM_07263 [Clostridium hylemonae DSM
           15053]
          Length = 459

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 127/363 (34%), Gaps = 36/363 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  ML+  L +                V   L  +  ++  G   L ++
Sbjct: 114 IAVSGTHGKTTTTSMLSHILLAGDLDPTIS--------VGGILKAIGGNIKVGTSGLFVT 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I+VI  I   HL  F  +++I ++       L   GT+ +N +  
Sbjct: 166 EACEYTNSFLHFFPKISVILNIDEDHLDFFKDLDDIRNSFRRFAALLPADGTLVINGEIE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI 288
             E +     A     + ++G   + ++         +   S+  V+       V     
Sbjct: 226 NLEEI----TAGLSCRVVTYGTEHSMNYSASNISHNEKGDASFDLVKNGEFMERVQLSVN 281

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +  IL+  +    + L  F     R         +  FT+ID+  + 
Sbjct: 282 GDHNVSNALAAVAVADILSVPLADICRGLKEFAGTNRRF---EHKGEKNGFTVIDDYAHH 338

Query: 349 --------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                     A+      +     PH   R  A+  +  +   L+ + H+ LA++ +   
Sbjct: 339 PTEIKASLTAAAHYPHKELWCVFQPHTYTRTKALFHEFVD--ALALADHVILADIYAARE 396

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              +   G     + DAL  +    +Y  T   +  F       GD +++      G   
Sbjct: 397 TDTL---GISSRDIADALKEKECDAYYFSTFKEIEDFCLDMCHKGD-LLIT----MGAGD 448

Query: 460 LIN 462
           ++N
Sbjct: 449 VVN 451


>gi|331092522|ref|ZP_08341344.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400743|gb|EGG80346.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 461

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 113/363 (31%), Gaps = 34/363 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA++G+ GKTTT  ML+  L   +K               +       +    + E    
Sbjct: 114 IAVSGTHGKTTTTSMLSHVLLEGEKDPTISVGGILK---AINGNIRVGNSGVFVTEAC-- 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E         P I++I  +   H+  F  I++I  +     + L +     L  +  
Sbjct: 169 ---EYTNSFLHFLPKISIILNVEEDHMDFFKDIDDIRQSFHRFAQLLPQNEEGTLIINGE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGI 288
             +             + ++G   + D+  +          S+   +    +  +     
Sbjct: 226 IEK--IEAITDGLTCRVLTYGLHGDYDYSAKNISYNETGCTSFDFYRFGEFADRISLSVT 283

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +  +    +++  K L  F   + R            FT+ID+  + 
Sbjct: 284 GEHNVSNALSAIAVGELTNVPLESIKKGLLSFSGTDRRF---EYKGELNGFTIIDDYAHH 340

Query: 349 --------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                   +               PH   R  A   +  E   LS + H+ L ++ +   
Sbjct: 341 PTEITATLSSVKHYPHRETWCIFQPHTYTRTKAFFHEFAE--ALSLADHVLLVDIYAARE 398

Query: 401 ISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
              +   G     L + + +     HY      +  F+    +  D +++      G   
Sbjct: 399 TDTL---GMSSELLAEEIKKLGTDAHYFPDFKSVENFVLKHCIHDD-LLIT----MGAGD 450

Query: 460 LIN 462
           ++N
Sbjct: 451 VVN 453


>gi|120597219|ref|YP_961793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. W3-18-1]
 gi|120557312|gb|ABM23239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           W3-18-1]
          Length = 439

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 130/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   +     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++   L           +   +IGVP     +  + +  + EL    L      TH
Sbjct: 122 TVTTLVGEMLREAGMAV----AVGGNIGVPALDL-LSENAEIFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    +    +   H+  +S ++    AK  ++           +      E +     
Sbjct: 173 SLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG +     +          S +               IG H   N+L  +
Sbjct: 228 -----NQNSFGLAPPEGDEWGICD-----SKIYHGRSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V  +  D     K    F     R         +G  T +++S   N  +  AA+  L
Sbjct: 278 ALVYAVGVDKQVMAKVARTFTGLSHRC---EVVGIKGGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G   +  + S      L E L    ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAGGDGKGADFSP-----LVEPL--SKVTHLITLGRDGNKIAALKEG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +I V   ++M        +    GD+V++    +S             F  L+ LL
Sbjct: 384 AIKV---DSMAAAVAKAAALATSGDIVLLSPACASLDMYSNFMARGDDFRNLVELL 436


>gi|282850404|ref|ZP_06259783.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
 gi|282579897|gb|EFB85301.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella
           parvula ATCC 17745]
          Length = 456

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 39/319 (12%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L  I++     RP  A++  I P HL+    +E   +AK  IFE    T 
Sbjct: 159 FLVAELSSYQLETIKYF----RPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLSTD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD     +             S     +    +      ++      +      
Sbjct: 215 YLVLNIDDPVVADM--------EHRAPSHILKISQKKAVENGAYYADGQCYIAKDGVAKF 266

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    I    + N+   L ++++  A          +     G   R          T 
Sbjct: 267 VIADEDIHIPGSHNIENILTVIALSHALGVPVETIHRIISEFHGVEHRLERVKTIDGITF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S+  A+    Q      G            G    +   D  E++     
Sbjct: 327 YNDSKATNVDSVVKALESFDQQVILLAG------------GHDKMTPLEDFMELVKE-KT 373

Query: 402 SHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
             V   G      + A   +    ++ + +M             GD+V++    SS    
Sbjct: 374 KAVIFMGEAADRFETAAKEAGVKLIYRALSMKEAVGQGYKLAETGDIVLLSPACSSFDWY 433

Query: 453 -----NSCGFYRLINLLLE 466
                    F R +++L E
Sbjct: 434 SCFEERGDDFKRCVHMLQE 452


>gi|238752432|ref|ZP_04613909.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709365|gb|EEQ01606.1| UDP-N-acetylmuramate--L-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 507

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 72/411 (17%), Positives = 138/411 (33%), Gaps = 49/411 (11%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + A    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 95  ASVVVVSTAISADNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 145

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        +                     + I E   S    +   
Sbjct: 146 KTTTTAMVSSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRYLIAEADESDASFLH-- 200

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +      +          L   G   +  DD     L  
Sbjct: 201 ---LQPMVAIVTNIEADHMDTYQGDFGNLKQTFINFLHNLPFYGRAVMCIDDPVVRELLP 257

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + I ++G S +AD Q+  ++Q   +  +   +L    M V  +  G H A N 
Sbjct: 258 RV----GRHITTYGFSDDADVQIASYRQEGPQGHFTLKRLDKPLMTVTLNAPGRHNALNA 313

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPA 351
              + + +    + D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 314 AAAVAVATEEGIEDDDILRALAGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPT 373

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSG 408
            + A I      +   + R + +          ++  + D A VLS  ++     V+ +G
Sbjct: 374 EVDATIKAAR--AGWPDKRIVMIFQPHRY--TRTRDLYDDFANVLSQVDVLLMLDVYAAG 429

Query: 409 F------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     +L   +     V        + +   +   L   D+++V+ 
Sbjct: 430 EPPIPGADSRSLCRTIRNRGKVDPILVSDSETVPEVLAQMLDGDDLILVQG 480


>gi|227113988|ref|ZP_03827644.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Pectobacterium carotovorum subsp. brasiliensis PBR1692]
          Length = 438

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 74/376 (19%), Positives = 131/376 (34%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A I+AITGS GK+T   ++     +             +IG+P     +     
Sbjct: 99  FCREAQAPIVAITGSNGKSTVTTLVGEMARAAGWQV----GVGGNIGLPALQL-LEQPAQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +    A I  +   H + +  G+++  +AK  I+E  +  
Sbjct: 154 LYVLELSSFQL----ETTSSLHAAAATILNVTEDHTNRYPFGLQQYRAAKLRIYEHADLC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G+            D       +   ++W+ V  +   
Sbjct: 210 VVNADDALTMPVRGADARCRSFGV------------DVGDYHLNRQQGETWLRVDGERVL 257

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +G H   N L  L +   +     +A+ AL+ F     R    + A  +    
Sbjct: 258 NTREIKLVGQHNYTNALAALALADAVKIPRASALTALTSFTGLPHRF---QMAFERNGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+S L+      EG    +LG   +  + S      L   L   +
Sbjct: 315 WINDSKATNVGSTEAALSGLAV-----EGSLHLLLGGDGKSADFSP-----LVPYLQGEH 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I H++  G     L  AL   I    ++TM+     I   +  GD+V++    +S     
Sbjct: 365 I-HLYCFGQDGQQLA-ALRPEIS-EQTKTMEQAMRIIAERVKPGDMVLLSPACASLDQFR 421

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 422 SFEQRGDEFARLAGEL 437


>gi|18146159|dbj|BAB82199.1| UDP-N-acetylmuramate-alanine ligase [Clostridium perfringens str.
           13]
          Length = 435

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 79  EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 128

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 129 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 185

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 186 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 240

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 241 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 300

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 301 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDC 360

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 361 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 415

Query: 445 DVVV 448
           D+++
Sbjct: 416 DLLL 419


>gi|168205753|ref|ZP_02631758.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|168217610|ref|ZP_02643235.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
 gi|189029222|sp|Q0TMG0|MURC_CLOP1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170662717|gb|EDT15400.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens E
           str. JGS1987]
 gi|182380340|gb|EDT77819.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens NCTC
           8239]
          Length = 457

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|319424766|gb|ADV52840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella
           putrefaciens 200]
          Length = 439

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 129/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   +     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++   L           +   +IGVP     +  + +  + EL    L      TH
Sbjct: 122 TVTTLVGEMLREAGMAV----AVGGNIGVPALDL-LSENAEIFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    +    +   H+  +S ++    AK  ++           +      E +     
Sbjct: 173 SLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG +     +          S +               IG H   N+L  +
Sbjct: 228 -----NQNSFGLAPPEGDEWGICD-----SKIYHGRSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V  +  D     K    F     R         +G  T +++S   N  +  AA+  L
Sbjct: 278 ALVYAVGVDKQVMAKVARTFTGLSHRC---EVVGIKGGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G   +  + S      L E L    ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAGGDGKGADFSP-----LVEPL--SKVTHLITLGRDGNKIAALKEG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +I V   ++M        +    GD+V++    +S             F  L+  L
Sbjct: 384 AIKV---DSMAAAVAKAAALATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|86740116|ref|YP_480516.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
 gi|86566978|gb|ABD10787.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Frankia sp. CcI3]
          Length = 544

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 70/222 (31%), Gaps = 48/222 (21%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPH-------------------YDGHDFILHAVQ 62
                V+G++ DS ++ P +   A+ G H                    D          
Sbjct: 65  DTDVIVHGVTHDSHAVRPGDLHAALPGAHTHGAAFAAAAVAGGAVAVLTD---------A 115

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITGSVGKT 120
           +GA  +      +       +PV   DD    L  +A            ++ +TG+ GKT
Sbjct: 116 EGARRI----AAMPPGPPGEVPVLVSDDPRRDLAPVAARIYGDPSAALRLLGVTGTNGKT 171

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------------MPVDVDFGIFELG 168
           TT  +L   L +   T   IG+    I      +             +   V+ G+    
Sbjct: 172 TTAFLLDAGLRAAGHTTGLIGTIETRIADERLASARTTPEASDLQALLATMVERGVGAAT 231

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           M  S           +    AV T ++  HL   S +E+  +
Sbjct: 232 MEVSSHALALHRADALHFAGAVFTNLSQDHLDFHSSMEDYFA 273


>gi|86147593|ref|ZP_01065903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
 gi|85834632|gb|EAQ52780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. MED222]
          Length = 452

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 113/361 (31%), Gaps = 23/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          YA        +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G IF   +
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKE 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + ++      +   S G+  + D +           +           V  + +
Sbjct: 223 DTAIQDVLSRGCWSETE---SSGEQGDWDAKKL---VKDGSQFGVYFQGECVGTVDWNLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDES 345
           G H   N LM +     +    D A ++L+ F   + R +             F     +
Sbjct: 277 GDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGEVAGVSVYDDFAHHPTA 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                + ++  +     I+           G   E    S     D   +    NI    
Sbjct: 337 IELTLSGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLKQ-ADSTYLFQPDNIDW-- 393

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                V  + DA       H S+ MD     I S    GD ++V  SN  GF  +   LL
Sbjct: 394 ----SVQDVADAC--HQPAHVSDNMDAFVAKIVSEAQAGDQILV-MSNG-GFGGIHQKLL 445

Query: 466 E 466
           +
Sbjct: 446 D 446


>gi|310659201|ref|YP_003936922.1| UDP-n-acetylmuramoyl-l-alanine:d-glutamate ligase [Clostridium
           sticklandii DSM 519]
 gi|308825979|emb|CBH22017.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Clostridium
           sticklandii]
          Length = 446

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 100/307 (32%), Gaps = 28/307 (9%)

Query: 146 HIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
           +IG P     +  D D F I EL    L          RP I+ I  I   HL+    + 
Sbjct: 138 NIGYPALEQAVVSDADTFLITELSSFQL----ESIKTFRPCISAILNITEDHLNRHKTMS 193

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
           E   AK  IFE       + LNYDD    L +++     I         +    +  +  
Sbjct: 194 EYMKAKFRIFENQSSDEFLVLNYDDELLRLSQSEIKPKIIYFSRREILKEGIFVENEQIV 253

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            C   +      +          +G H  +N+L  + I  +   D     + +  F   E
Sbjct: 254 ACIGNTK-----EYIMDVKDILLLGQHNLENVLAAVSIAVLAGIDKSIIKQEVMNFRGVE 308

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R               I++S   NP S   A+  ++          I + G M +  + 
Sbjct: 309 HRL---ELVRTYNDVNYINDSKATNPDSSIKALEAMNT-------PVILIAGGMDKQSDY 358

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRS-IHVHYSETMDGLFLFIQSSLV 442
           S      +        + H+ L G     ++  A+ +   ++   E M            
Sbjct: 359 SSFIDSCI------PKVKHLILLGETKDVIEKTAISKGLGNITKVEDMKQAVDVAFLKAK 412

Query: 443 DGDVVVV 449
           +GD V++
Sbjct: 413 EGDTVLL 419


>gi|300309676|ref|YP_003773768.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Herbaspirillum
           seropedicae SmR1]
 gi|300072461|gb|ADJ61860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 710

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 87/331 (26%), Gaps = 37/331 (11%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L         ++   A +  +   HL     +E  A+ KA IF      
Sbjct: 382 QAWVLELSSFQLHTTH----SLQADAATVLNLTQDHLDWHGSMEHYAADKARIFGQHTVR 437

Query: 221 GTIFLNYDDSFFEL---------LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                +                 L   +       +   G    A+  + +  +  E   
Sbjct: 438 VLNRDDALVMQMAAAGSALSTFGLDEPTAPNSFGLVNDNGMLWLANAFVHEDDEVPEGKR 497

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG------ 325
              Q       V    +    A  +      ++ L A        L +     G      
Sbjct: 498 RRKQKDMLPPPVTLKRLMPADALKIRGAHNAMNALAALALCRAIDLPMAPLLHGLRDYTG 557

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R             D+S   N  +  AA++ L         R + + G   +  + S
Sbjct: 558 EPHRVELVGVIQEVDYYDDSKGTNVGATVAALNGLGL--GGRPNRIVLIAGGDGKGQDFS 615

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
                   ++        V L G    A++ AL    + +    +++            G
Sbjct: 616 P------LDLPVQKYARAVLLIGRDAPAIRAALADSGVELIDCASLEAAVEKAGEIATAG 669

Query: 445 DVVVV---KSSNSC------GFYRLINLLLE 466
           D+V++    +S              ++ + E
Sbjct: 670 DIVLLSPACASLDMFRNYAHRAEVFVDAVRE 700


>gi|261876162|ref|YP_697180.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           ATCC 13124]
 gi|255529905|gb|ABG83104.2| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens ATCC
           13124]
          Length = 466

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 110 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 159

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 160 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 271

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 272 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 331

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 332 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 391

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 392 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKG 446

Query: 445 DVVV 448
           D+++
Sbjct: 447 DLLL 450


>gi|238026180|ref|YP_002910411.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
 gi|237875374|gb|ACR27707.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia glumae BGR1]
          Length = 470

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 63/373 (16%), Positives = 123/373 (32%), Gaps = 30/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTSSMLAWLLEESGLN---PGFLIGGVPLNFGVSARLTESSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I  N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPGVGRIVANG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            ++  + + A+     ++    FG          +     ++ +       +  EV    
Sbjct: 222 REAALDRVLARGCWSEVER---FGVEGGWQALPAEDGVPVDERFAVYWQGARMGEVAWSV 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  QN L  +     +      A +A + F   + R +             + + + 
Sbjct: 279 QGEHNRQNALAAIAAARSVGVPPAQAARAFATFRNVKRRME----IRGSVDGVTVYDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P +++  I+ L         R +AVL    +  ++G +            SL +   V
Sbjct: 335 HHPTAIETTIAGLRTRIGREHTRILAVLEPRSNTMKLGTMKAQL------PASLADADLV 388

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G          +L +AL          + +  L   + ++   GD ++V  SN  GF
Sbjct: 389 FGYGAASGRDALGWSLAEALAPLGARAQAFDDLHALVKAVAAAARPGDQILV-MSNG-GF 446

Query: 458 YRLINLLLEEFPA 470
             +   LL+   A
Sbjct: 447 GGVHQKLLDALSA 459


>gi|254516598|ref|ZP_05128657.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
 gi|219675021|gb|EED31388.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR5-3]
          Length = 444

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/428 (15%), Positives = 129/428 (30%), Gaps = 42/428 (9%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL-----GALNKLAVAARLRSKAT---------- 109
           A   +   +           +  V + L          L+   R +S             
Sbjct: 31  AAAGIALHEGFDPEHLPDDALIVVGNALSRGNPAVEAVLSRGLRYQSGPQWLAEAVLADR 90

Query: 110 -IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A++G+ GKTT   ML   L     +    G     + +   ++       F + E  
Sbjct: 91  WVLAVSGTHGKTTASSMLAWLLEDAGLS---PGFLIGGVPLNFGVSARLGSGSFFVIEAD 147

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                           RP   ++  +   H   +  +  I      +   +   G +F  
Sbjct: 148 EYDTAFFDKRAKFVHYRPRTLIVNNLEFDHADIYPDLAAIQRQFHHLLRCVPGNGRVFTP 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E +         +T+ +       D Q   +   ++      QL     E +  
Sbjct: 208 RAVPAVEEMLELGCWTPRETLST------EDSQADWYALLADTGGTHWQLNAPGGETLAV 261

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N+   LG  +       T   A++      G  +R           + D+ +
Sbjct: 262 SWGQRGAHNVANALGACAAARHVGVTPKHAVNALQGFLGVRRRLELRGEVSNIRVYDD-F 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P ++K+ ++ L   +         VL  +       +      A   S      V+ 
Sbjct: 321 AHHPTAIKSTLAALQGAAGRKR-----VLAVIEPRSNTMRMGEHRSALAPSTAAADEVFW 375

Query: 407 SGFHVL--ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YR 459
                L  +L+D +   ++    SE +D L   I    + GD VVV  SN   F     R
Sbjct: 376 YQPKALGWSLEDVIDSSAVPASISEDIDALVARIVDHALPGDDVVV-MSNG-AFGGIHER 433

Query: 460 LINLLLEE 467
           L++ L + 
Sbjct: 434 LLSALAKR 441


>gi|126741300|ref|ZP_01756978.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717618|gb|EBA14342.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 471

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 70/406 (17%), Positives = 121/406 (29%), Gaps = 55/406 (13%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      L       +PV    D       LA   RL+S    IAI G+ G
Sbjct: 71  AAVVVISSAIKPGNPELDEARLRGLPVVRRAD------MLAELMRLKSN---IAIAGTHG 121

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   + +           N  I             ++ + E   S        
Sbjct: 122 KTTTTTMMAELMVA---GGFDPTIINGGIIHAYGSNARMGQGEWMVVEADES-----DGS 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IAV+T I P H+ ++   + +     +    +   G      D    + L  +
Sbjct: 174 FNRLPATIAVVTNIDPEHMEHWGDFDTLRQGFHDFVSNIPFYGIAVCCTDHPEVQTLVGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T     ++      L      +                     G H   N L 
Sbjct: 234 ISDRRVVTYGFNAQADVRASNLTYKGGVAHFDVHLQAEDRVIEGCTLPMPGDHNVSNALS 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK---- 354
            + +   L  +     +AL+ F     R       + +     I + Y  +P  +     
Sbjct: 294 AVAVARHLGMNSSEIREALAAFGGVNRRFT----KVGEVDGVTIIDDYGHHPVEIAAVLK 349

Query: 355 -----AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
                    V++   PH   R  ++  D C                  +  I+ V+ +G 
Sbjct: 350 AARQACEGRVIAVHQPHRYSRLSSLFDDFCAC-----------FNEADVVAIAEVFAAGE 398

Query: 410 HV------LALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVV 447
                     L   L R  H H    MD   L   ++     GD+V
Sbjct: 399 DPIEGASRDDLVAGLVRHGHRHARALMDEGDLERLVREQARPGDMV 444


>gi|25008803|sp|Q8XHJ0|MURC_CLOPE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 457

 Score = 50.6 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|89055250|ref|YP_510701.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
 gi|109892708|sp|Q28NN6|MURC_JANSC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|88864799|gb|ABD55676.1| UDP-N-acetylmuramate--L-alanine ligase [Jannaschia sp. CCS1]
          Length = 474

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 77/419 (18%), Positives = 139/419 (33%), Gaps = 49/419 (11%)

Query: 48  GPHYDGHDFILHAVQK--GAGLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARL 104
           G       F+    +   GA +VV+++ +              +  V  A   LA   RL
Sbjct: 57  GARV----FVGQQAENLEGAEVVVISSAIKPGNPEYDAARLRGLPIVRRA-EMLAELMRL 111

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           RS    IA+ G+ GKTTT  M+      +          N  I             D+ +
Sbjct: 112 RSN---IAVGGTHGKTTTTTMVATL---LDHGGVDPTVINGGIIHAYGSNARVGQGDWMV 165

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S         + +   IA++T I P H+ ++  IE +     +    +   G   
Sbjct: 166 VEADES-----DGTFNRLPATIAIVTNIDPEHMEHWGTIENLRQGFLDFVSNIPFYGLAV 220

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              D    + L  K        + +FG +  AD +       +  +  ++ LQ + + + 
Sbjct: 221 CCTDHPEVQTLVGKITDR---RVVTFGFNAQADVRAVNLHYRAGVACFDIALQSEDILIE 277

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+   L  V++       A +        +G  +R+      G  T+ID+
Sbjct: 278 GCTLPMPGDHNVSNALAAVAVARHLGMKADEIREALDGFKGVNRRFTKVGEVGGITVIDD 337

Query: 345 SYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             +           A   +   V++   PH   R  ++  D    G  S++  + +AE  
Sbjct: 338 YGHHPVEIAAVLKAARQASDGRVIAVHQPHRYSRLHSLFDDF--CGCFSEADVVAIAE-- 393

Query: 397 SLYNISHVWLSGFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
                  V+ +G           L   + R  H H       D L   ++     GD+V
Sbjct: 394 -------VYAAGEDPIEGASRDDLVAGMIRHGHRHARAILDEDDLERLVREQARPGDMV 445


>gi|218708484|ref|YP_002416105.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus LGP32]
 gi|254766064|sp|B7VJ01|MURD_VIBSL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218321503|emb|CAV17455.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio splendidus
           LGP32]
          Length = 438

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 126/369 (34%), Gaps = 51/369 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AITGS GK+T  ++  +   +             +IG+P           + + E
Sbjct: 107 NKPAVAITGSNGKSTVTDLTGVLAKAAGLNV----GVGGNIGIPALDLLELDADLY-VLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF            
Sbjct: 162 LSSFQL----ETTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNN---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +       +++      + +FG     D Q           W+    +         
Sbjct: 208 AQYAIVNREDKETYPDHSMPLVTFGL----DDQEFGVATIDGTEWLTDNGKPVLPSQDLT 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L++L ++  +  D + +++AL  ++    R    +   N+     +++S 
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYNKSLEALKAYNGLTHRC---QVVANKREIKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       +G    ++G + +  + S     +L  VL+  +   +  
Sbjct: 321 ATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELKPVLAQLDRVQLCC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G         +P        +TM  +   I + LV GD+V++    +S           
Sbjct: 371 FGEDA---AQFMPLHPSAKTFDTMRDIIESISAQLVSGDMVMLSPACASFDQFNNFMARG 427

Query: 455 CGFYRLINL 463
             F  L + 
Sbjct: 428 DAFTELAHE 436


>gi|330469289|ref|YP_004407032.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
 gi|328812260|gb|AEB46432.1| UDP-N-acetylmuramate/alanine ligase [Verrucosispora maris
           AB-18-032]
          Length = 510

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 132/352 (37%), Gaps = 32/352 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKT+T  M+T+                      +         ++ + E  
Sbjct: 116 RTVAVAGTHGKTSTTSMVTMVFQQAGAD---PSFVIGGEISEVGSGAHHGTGEYFVVEAD 172

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S          + RP ++++T I   HL+ +  +  + +  AE     +  G I    D
Sbjct: 173 ES-----DRSFLIYRPFVSIVTNIEADHLNTYGDLANLEATFAEFARLTDPDGFIITCAD 227

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D+  + L A   A G + +Y++G+S +AD +L +    +        + G+S  E     
Sbjct: 228 DAGGQRLAATLRAQG-RRVYTYGESADADLRLSEMASSARGVRYLAHIDGRSLGEFRMPV 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G HMA N    +    +L   +  A  AL+ F     R +            L+ + Y 
Sbjct: 287 PGRHMALNSASAVLAAYLLELPLQAAEAALAAFPGVRRRFE----RKGVADGVLVYDEYA 342

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P SM  A+  L +++  G   R+ V+     +   ++    ++AE L++     + L 
Sbjct: 343 YHPTSMTLALQTLREVAGEG---RLLVVFQPYRL-YRTRDLQSEIAEALAIA--DELVLL 396

Query: 408 -----------GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                      G    AL +A+   +    + ++ D     +      GDVV
Sbjct: 397 EVFGPGEQRGPGEGSAALIEAVALPAERKVFVDSWDAAPAEVARRARSGDVV 448


>gi|261211501|ref|ZP_05925789.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
 gi|260839456|gb|EEX66082.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio sp. RC341]
          Length = 440

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 121/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF  
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFGH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 208 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEHAAQFSVAQHQGREYLF 253

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 254 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDGDKF---MPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|161485639|ref|NP_563409.2| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           str. 13]
          Length = 466

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 110 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 159

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 160 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 216

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 217 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 271

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 272 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADSIVSGLSSFGGAHKRFEYK 331

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 332 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNRIVCVFQPHTYTRTKTLFNDFVKCFDDC 391

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 392 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 446

Query: 445 DVVV 448
           D+++
Sbjct: 447 DLLL 450


>gi|260434248|ref|ZP_05788219.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418076|gb|EEX11335.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 469

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 67/404 (16%), Positives = 119/404 (29%), Gaps = 44/404 (10%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +   A +VV       +         G+  V  A + LA   RL+S    IAI G+ GKT
Sbjct: 68  LDNAAVVVVSTAIKPGNPELDGARALGLPVVRRA-DMLAELMRLKSN---IAIAGTHGKT 123

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  M+   + +           N  +             ++ + E   S         +
Sbjct: 124 TTTTMMAELMVA---GDFDPTVINGGVIHAYGSNARMGQGEWMVVEADES-----DGSFN 175

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +   IA++T I P H+ ++   + + +   +    +   G      D +  + L  +  
Sbjct: 176 RLPATIAIVTNIDPEHMEHWGDFDRLRAGFHDFVSNIPFYGLAVCCTDHAEVQALVGRIT 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T     ++      L      +                     G H   N L  +
Sbjct: 236 DRRVRTYGFNAQADVRAVNLTYKGGIAHFDIHLQYEDTVIEGCTLPMPGDHNVSNALSAV 295

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L         AL+ F     R       + +     I + Y  +P  + A +   
Sbjct: 296 AVARHLGMKTAQIRDALANFGGVNRRFT----KVGEVNGVTIIDDYGHHPVEIAAVLKAA 351

Query: 361 SQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            Q           PH   R   +  D C     +               I+ V+ +G   
Sbjct: 352 RQATEGRVIAVHQPHRYSRLSNLFEDFCACFNDADV-----------VAIAEVFSAGEDP 400

Query: 412 ------LALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVV 447
                   L   L R  H H    +D   L   ++     GD+V
Sbjct: 401 IEGASRDDLVQGLIRHGHRHARALLDEGDLERLVREQARPGDMV 444


>gi|239978973|ref|ZP_04701497.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           albus J1074]
 gi|291450852|ref|ZP_06590242.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
 gi|291353801|gb|EFE80703.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces albus
           J1074]
          Length = 476

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 118/389 (30%), Gaps = 44/389 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           ++A   R    A  + +TG+ GKTTT  ML   L++             +IG PL    +
Sbjct: 107 EIAWRLRPEGAADWLCVTGTNGKTTTTRMLAAILTAAGLR----TEAVGNIGTPLIDVVL 162

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         +R H A +  +AP HL     +E  A+ K  I+E
Sbjct: 163 AAEPYDVLAVELSSYQLHWT----PSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE 218

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           G             +   +  A          ++ G    ++  + +     +++++  +
Sbjct: 219 GNRVACVYNTADPATEALVRAADVEEGCRAVGFTLGAPGPSELGVVEG-LLVDRAFVPDR 277

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +      N+   L   ++  A    A               R      
Sbjct: 278 HRQAQELAEVADVDPPAPHNIANALAAAALARAYGVEARAVRDGLRAFAPDPHRIEKVAE 337

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +D+S   N  + +A+++    I     G     + D             DL   
Sbjct: 338 IDGVTYVDDSKATNTHAAEASLNAYRPIVWIAGGLAKGAVFD-------------DLVTS 384

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVV 447
            +   +  V L G     +++AL R         +D              +     GD V
Sbjct: 385 AADR-LRGVVLIGQDRALIREALARHAPDVPVVDLDRTDTGAMSAAVTAARDLAEAGDTV 443

Query: 448 VV---KSS---------NSCGFYRLINLL 464
           ++    +S             F   +  L
Sbjct: 444 LLAPACASMDMFTNYNRRGEAFAEAVRAL 472


>gi|168213417|ref|ZP_02639042.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
 gi|170715048|gb|EDT27230.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens CPE
           str. F4969]
          Length = 457

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRSHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|309801878|ref|ZP_07695994.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|308221493|gb|EFO77789.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 164

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 28/142 (19%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE-AFFAIKGPHY-----DGHDFIL 58
           WT       + G          V  I+ D+R + P    F   KG  +     DG D   
Sbjct: 32  WTLD--ASDLPG------ANEPVGSITYDTRKVEPGSMLFV--KG-RFKPEFLDGID--- 77

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR--LRSKATIIAITGS 116
               KG    V  T+      ++      V+DV  A++ L+ A     +++ T+I ITG+
Sbjct: 78  ---GKGLAAYVAETEYADRTKAIG---IIVEDVHKAMSLLSAAFYGMPQNELTVIGITGT 131

Query: 117 VGKTTTKEMLTIALSSIKKTYA 138
            GKTTT  +    L+       
Sbjct: 132 KGKTTTAYLAHAILNEYSHGRC 153


>gi|91200088|emb|CAJ73131.1| similar to UDP-N-acetylmuramate-L-alanine ligase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 498

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/412 (14%), Positives = 118/412 (28%), Gaps = 35/412 (8%)

Query: 68  VVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           V+V+  +      L +       V      L  L    R       IAI+G+ GKTTT  
Sbjct: 86  VIVSAAIQEGNPELKVARQLGIKVVKYSQILGSLMQEKRG------IAISGTHGKTTTSA 139

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVR 183
           M++  L   +     +        VP       +      + E    +   +  +     
Sbjct: 140 MISTILKKAELDPTYVIGGE----VPDIGGNAHLGKGNLFVAEACEYNSSFLDLV----- 190

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I VIT I   HL  +  +EEI +A       + K G + +N DD    +   +S    
Sbjct: 191 PSIGVITNIEEDHLDYYGNLEEIVNAFGHFANLIAKNGLLVVNDDDRNVAVAAKRSVCKR 250

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                       A   L   +  ++              +   G    +     + +   
Sbjct: 251 ETYSLRHTSHWYAKKILPTTQGINKFRVYNRGKIFGDFWLKIPGSHNILNALAAIAVCTS 310

Query: 304 ----SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
                 +      + K                   +        +        +  A  +
Sbjct: 311 IGVDKEIIKTSLESFKGAKRRFQIVAIKNNITIIDDYAHHPTEIDVTLKAARELYPARKI 370

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R   +L  + E   L+    +         +      +    L L + + 
Sbjct: 371 CCVYQPHQYSRTRHLLKKLSESFYLADKVALADIYESRDNDFEK---TSISSLKLYEEIR 427

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---YRLINLLLEE 467
           +  + + Y   M+ +   +  +   GDV++     + G    +++ + L E 
Sbjct: 428 KTGVDIQYYPQMEYITDMLCLNAKPGDVII-----TMGAGDIWKVAHELAER 474


>gi|288929764|ref|ZP_06423607.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288328865|gb|EFC67453.1| UDP-N-acetylmuramate--alanine ligase [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 460

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 95/340 (27%), Gaps = 26/340 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              +   G+ GKTTT  M    +              +      T   +    ++ + E 
Sbjct: 112 LKGLCFAGTHGKTTTSCMCAHIMHQSHPDCNAFLGGISKN--YGTNYILSPKSEYVVIEA 169

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                 E     H +RP ++VIT+  P HL  +        +       + + G + +  
Sbjct: 170 D-----EFDRSFHWLRPWMSVITSTDPDHLDIYGTKAAYMESFRHYTTLIREGGVLIIKK 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                     K        +Y +                   ++  V        V    
Sbjct: 225 GVEL------KPDVKPGVKVYEYALDAGDFHAENVKIDNGNITFDFVSPVENVKNVTLGH 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                 +N +  + +  +   + +     +  +H  + R        +  F +      N
Sbjct: 279 PIPINIENAVAAMAMAQLNGCNAEELRYGIKTYHGVDRRFDFKIKTPHLVFLSDYAHHPN 338

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
               S ++   +          +          +   ++ F+ + A+ LSL  +  V L 
Sbjct: 339 EILQSAQSLRQLYKDRKITAVFQPH--------LYTRTRDFYKEFAKALSL--LDEVILC 388

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             +    ++ +         + +D      +S +   DV+
Sbjct: 389 DIYPAR-EEPIEGVSSKLIYDNLDAGVE--KSMIAKDDVL 425


>gi|86516425|gb|ABC97888.1| MurD [Shigella flexneri]
 gi|86516428|gb|ABC97890.1| MurD [Shigella flexneri]
 gi|86516431|gb|ABC97892.1| MurD [Shigella flexneri]
 gi|86516434|gb|ABC97894.1| MurD [Shigella flexneri]
 gi|86516437|gb|ABC97896.1| MurD [Shigella flexneri]
 gi|86516440|gb|ABC97898.1| MurD [Shigella flexneri]
          Length = 154

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L     H +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                L   L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LVRYLNGDNV-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV---KSS---------NSCGFYRLINLL 464
           V++    +S             F RL   L
Sbjct: 124 VLLSPACASLDQFKNFEQRGNEFARLAKEL 153


>gi|256372027|ref|YP_003109851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008611|gb|ACU54178.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 437

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 123/409 (30%), Gaps = 67/409 (16%)

Query: 45  AIKGPHYDGHDFILHAVQKGAGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           AI G  +D              LVVV+            L  PV           +L + 
Sbjct: 63  AIVGARFD--------------LVVVSPGIRTERVERLGLDGPVI---------GELELG 99

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
             L   A I A+TG+ GK+T   +    L               ++G PL+         
Sbjct: 100 YLLA-AAPITAVTGTNGKSTVTTLTASMLGD-------GAVAAGNLGTPLSAV-ADSGAR 150

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L          R  +A +  + P HL      E   +AKA + E L    
Sbjct: 151 RLVVEVSSFQLVWA----PTFRASVATVLNLTPNHLDYHGSFEAYRAAKARLIERLAPGD 206

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                  +   + +       G++       +++AD+++             V+++    
Sbjct: 207 VAVWPVGEGAVDAIA---IPRGVEVRTFSATARDADYRVEHGALVGPDGRTLVRVEELGR 263

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              H       A  +    G        V    + L+                 +G  T 
Sbjct: 264 RAPHDVANMLAAWALAEASGAELERARRVAREFRGLAHRLQV---------VAVRGGLTY 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D+S    P +  AA+    ++     GR           G   +    D+AE ++    
Sbjct: 315 VDDSKATTPEAAVAAVRSFDRVVLIAGGRTK---------GTGFERL-RDVAERIA---- 360

Query: 402 SHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV 449
             V   G     +   L  ++  +  + +MD          + G VV++
Sbjct: 361 -GVVAIGESAHRVVADLGDAVPWIVEANSMDEAVAVASERALPGTVVLL 408


>gi|90411962|ref|ZP_01219970.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
 gi|90327220|gb|EAS43592.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum 3TCK]
          Length = 452

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 103/364 (28%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVAGTHGKTTTASMLA--WILEDCGYEPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILAPKG 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +              +S  +    D      KQ ++ S  +V L G  +       
Sbjct: 223 VESIQQTLD-------MGCWSELEFTGDDGHWIAKKQMTDGSVFDVYLDGLMIG--TVRW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T               +R           + D+  + 
Sbjct: 274 DLVGDHNVSNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKGEVKGVKVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS 407
                  AI +         G    +L  + E    +    +   ++  +L    +V++ 
Sbjct: 334 -----PTAIELTLGGLRAKVGDEQRILA-VLEPRSNTMKLGVHKGDIAPALNAADYVFIY 387

Query: 408 GFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                      + D   +         +D L   I +   DGD ++V  SN  GF  + +
Sbjct: 388 QPDTIPWSVNEIADGCSQPAATDI--DLDKLVDKIVTEAKDGDTILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 KLLA 447


>gi|109896574|ref|YP_659829.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
 gi|109698855|gb|ABG38775.1| UDP-N-acetylmuramate [Pseudoalteromonas atlantica T6c]
          Length = 448

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 79/418 (18%), Positives = 140/418 (33%), Gaps = 46/418 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   I   S P + +++VL                 ++A++G+
Sbjct: 67  IGNALSRGNLA--VEYVLNRGIPYTSGPQWLLENVLK-------------DRWVLAVSGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  ML   L S   +    G     I     ++    +  F + E     S   +
Sbjct: 112 HGKTSTSSMLAWILESAGMS---PGFLIGGIPQNFDISARLGETPFFVIEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R      RP   VI  I   H   F  I +I      +   +   G +     D+    
Sbjct: 169 KRSKFVHYRPRTLVINNIEFDHADIFDSIADIQKQFHHLIRMIPGNGLVIAPKTDNQITQ 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  K     ++ + S  K+        +        +  +        V    +G H  Q
Sbjct: 229 VLDKGCWSPVQFVGSDWKA--------ENGSADGGEFDVIYKGKSFGRVKWSLLGLHNVQ 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N +M +          + AI+A           KR    L       + + +  +P ++ 
Sbjct: 281 NAMMAIIAARHAGVLPEVAIEA----LGSFVNAKRRMEILGTVNGITVYDDFAHHPTAIA 336

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGF-HV 411
             +  L   +  G+ R +AVL    E    +     H       S      V++    ++
Sbjct: 337 TTLEGLR--AKVGDARILAVL----EPRSNTMKMGVHKQTLAK-SWSAADQVFIYEPSNL 389

Query: 412 LALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
               DAL     V  S    ++ L   I S +  GD V++  SN  GF  +   LL++
Sbjct: 390 SWSMDALLAQSEVTASLHNDLNILEKSILSYVQPGDHVLI-MSNG-GFGGIHQRLLQK 445


>gi|329766782|ref|ZP_08258312.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella haemolysans
           M341]
 gi|328839293|gb|EGF88875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella haemolysans
           M341]
          Length = 446

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 116/345 (33%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +IAITG+ GKTTT +M    L + KK          +IG P             + 
Sbjct: 106 FNIDMIAITGTNGKTTTTQMTFDILKASKKDVF----LAGNIGYPSIEIAYNHPNSLLVT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   ++     +P IAVIT +   HL     +E    AK  +++  +K   + L
Sbjct: 162 EVSSFQLQGTKYF----KPSIAVITNLGVGHLDYHGSVENYRDAKRNVYKNQDKNDILIL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N ++     ++  +  +     Y   ++  AD  +R      E   +    +        
Sbjct: 218 NINEKDKFDIERINSKV---LFYDTKENIEADIYVRDNMVIFEGVELFDITKLS------ 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+   +    I            +V +   G   R +           ++S
Sbjct: 269 ----LPGMHNVENAINAAVISFIKGAGKESIQNVLYAFSGVKHRLQFVGEHKGVKFYNDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +   A+S         E   I V G     G+       +L   L    +  + 
Sbjct: 325 KATNPVATTRALSGF-------EKNIILVCG-----GQDRGIDFKELIPYLPR--VKSMV 370

Query: 406 LSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G     L + A+  ++  H +  +D   +   S   +GD +++
Sbjct: 371 VVGESKEILYNLAIDNNVDCHKAIKIDDATILANSLAENGDTILL 415


>gi|319407502|emb|CBI81150.1| UDP-N-acetylmuramate--alanine ligase [Bartonella sp. 1-1C]
          Length = 456

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 136/418 (32%), Gaps = 46/418 (11%)

Query: 53  GHDFILHAVQKGAG-LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GH     A   GA  +V+++T +  +             V+     LA   R R     I
Sbjct: 39  GHR----AENLGAAEVVIISTAIKKTNPEYIAAQKRHLPVVKRAEMLAELMRFR---RTI 91

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+   L +       I     +            D D+ + E   S 
Sbjct: 92  AIGGTHGKTTTTSMVAALLDAGCFDPIVINGGIIN---AYGTNARMGDGDWMVVEADES- 147

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   IAV+T I   HL ++     I  A  +  E +   G   +  D   
Sbjct: 148 ----DGTFLKLPADIAVVTNIDVEHLDHYGNFNAIREAFRQFVENVPFYGFAVMCIDHPE 203

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-------QLQGKSMEVV 284
            + L ++ H      + ++G +  AD +        +++  ++         + +   ++
Sbjct: 204 VQTLASRIHDR---WVITYGANPQADIRFLNLSMEGQKACFDILIRSRKTGEKIEISNLI 260

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + I   L    +   K L+ F   + R  +            I +
Sbjct: 261 LPMSGKHNVSNATAAIAIAHELGISPEAIKKGLAEFGGVKRRFTKTGNWNG----VEIFD 316

Query: 345 SYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  +KA +           ++ + PH   R   +  D       + +  I     
Sbjct: 317 DYGHHPVEIKAVLHAARESAKGNIIAIMQPHRYTRLYHLFDDFSTCFNDADTVMITPVYA 376

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                I     +GF    L + +  + H  VH   +++ +   +      GD VV   
Sbjct: 377 AGEEPI-----AGFGSKELVEHIQMAGHRDVHLINSLENVISIVSRFAKSGDYVVFLG 429


>gi|119026124|ref|YP_909969.1| hypothetical protein BAD_1106 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765708|dbj|BAF39887.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
          Length = 285

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T   L              +  +  I+ D  S+ P   F        D H  +  
Sbjct: 1   MNRRMTLGLLASRYGFDLDPTSAAEVTITSIADDVESVRPGALFV--PSADVDVHQ-LSQ 57

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
           A ++GA   +V   +      + IP+   +  +G L KL             + AITG
Sbjct: 58  AQEQGAYGAIVPHALRGQTDDIQIPLIYAEPTMGQLGKLVSDMAGNPSDALAVFAITG 115


>gi|121601881|ref|YP_989227.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella bacilliformis
           KC583]
 gi|166222956|sp|A1UTC4|MURC_BARBK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|47779263|gb|AAT38531.1| MurC [Bartonella bacilliformis]
 gi|120614058|gb|ABM44659.1| UDP-N-acetylmuramate--alanine ligase [Bartonella bacilliformis
           KC583]
          Length = 475

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 71/425 (16%), Positives = 137/425 (32%), Gaps = 47/425 (11%)

Query: 47  KGPHYD-GHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           KG +   GH     A   G A +VV++T +  +             V+     LA   R 
Sbjct: 51  KGINVHIGH----QAKNLGEAEVVVISTAIKKTNPEYIAAKEKHLPVVKRAEMLAELMRF 106

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           R     IAI G+ GKTTT  M+   L +       I     +            + ++ +
Sbjct: 107 RQA---IAIGGTHGKTTTTSMVAALLDAGNFDPMVINGGIIN---AYGTNARMGNGNWMV 160

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S           +   I V+T I   HL ++   + +  +  +  E +   G   
Sbjct: 161 VEADES-----DGTFLKLPADIVVVTNIDSEHLDHYGSFDAVRESFRQFVENVPFYGFAV 215

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQ 277
           +  D    + L ++        + ++G +  AD +   +   ++++  +         +Q
Sbjct: 216 MCLDHPEVQTLASRIDDR---WVITYGANPQADVRFLNFSMKNKKAHFDVLIRSRKTGIQ 272

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +  ++V    G H   N    + I   L    +   K L+ F   + R  +        
Sbjct: 273 TELRDLVLPMSGKHNVSNATAAIAIAHELGISDEVIRKGLAEFGGVKRRFTQTGSWRG-- 330

Query: 338 FFTLIDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
               + + Y  +P  +K             V++   PH   R   +  D       + + 
Sbjct: 331 --IDVFDDYGHHPVEIKAVLRAARESTNGQVIAIAQPHRYSRLCNLFDDFTTCFNDADTI 388

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            I          I     +GF    L + +       V   + ++ +   + +    GD 
Sbjct: 389 MIAPVYAAGEEPI-----TGFGSKELVEHIQMASHCDVRLIDDLEDVVSIVSTVAKSGDY 443

Query: 447 VVVKS 451
           VV   
Sbjct: 444 VVFLG 448


>gi|313888013|ref|ZP_07821691.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845968|gb|EFR33351.1| UDP-N-acetylmuramate--L-alanine ligase [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 464

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 108/347 (31%), Gaps = 27/347 (7%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA++G+ GKT+T  MLT  +  +      +          +       D    + E  
Sbjct: 113 KSIAVSGTHGKTSTTSMLTEIIKDLDVNPTIMLGGQLKD---IDGNIKIGDEKLFLTEAC 169

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +++      P   +I  I   HL  F  I+ I        + L ++  + +N D
Sbjct: 170 EYKANILKYF-----PTTEIILNIDEDHLDYFDNIDHIIRTFKGYVDNLRESDYVVINID 224

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHH 286
           D   + L    +       ++FG   +AD   +  +   E   ++       K   V   
Sbjct: 225 DENAKTLLPIEN----CKFFTFGIKNHADLMAKNIEFNEEGFPTYDLYLRDEKVAHVELS 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  +G   +    +  +I  L  +   E R +                  
Sbjct: 281 VLGRHNILNSLAAIGAAYVNGISIKDSIAGLKSYKGVERRLEVKGFYKGAKVMDDYAHHP 340

Query: 347 NANPASMKAAISVLS-----QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               +S+ A  +           PH   R   +L       + S    I         + 
Sbjct: 341 TEIKSSIHAIKNACKGKLYTVFQPHTFTRTKLLLDAFANSFDESDVIIITDIYAAREKD- 399

Query: 402 SHVWLSGF-HVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDV 446
                 G  H   L++A+     +  Y    + +  F++ ++   D+
Sbjct: 400 -----YGDIHSKTLRNAIADHRDNAFYISGFEDIVKFVKENISKDDI 441


>gi|218249332|ref|YP_002375315.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226321282|ref|ZP_03796810.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
 gi|218164520|gb|ACK74581.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi ZS7]
 gi|226233314|gb|EEH32065.1| UDP-N-acetylmuramate--alanine ligase [Borrelia burgdorferi Bol26]
          Length = 468

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 64/382 (16%), Positives = 129/382 (33%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+        AL +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYP---EALGELSRKYYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E       E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETC-----EYKNHFLNFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      SE              + V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSEYFCFSFLGLLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSDADILILHNIYLSNREDFNPDELSVKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|110802264|ref|YP_699749.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium perfringens
           SM101]
 gi|123047139|sp|Q0SQ58|MURC_CLOPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110682765|gb|ABG86135.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens
           SM101]
          Length = 457

 Score = 50.6 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 104/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVKLIPNDGYIIGNADDKKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|182624328|ref|ZP_02952113.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
 gi|177910546|gb|EDT72919.1| UDP-N-acetylmuramate--alanine ligase [Clostridium perfringens D
           str. JGS1721]
          Length = 457

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 103/364 (28%), Gaps = 31/364 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       +A+ G+ GKTTT  M++    S       +   +  I     
Sbjct: 101 EFLGQIMKGHKFN-----VAVAGTHGKTTTTSMISHVALSADLDPTILVGGDLDI----- 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  +   G  E  ++   E +       P++ +I  I   HL  +  I  I     +
Sbjct: 151 ---IHGNFRVGNSEYFITEACEYKQSFLRFFPYVGIILNIDADHLDFYKDINHIKDTFKQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G I  N DD     +   +    +    + G     D Q R  +   +    
Sbjct: 208 FVRLIPNDGYIIGNADDEKVMEVLEVAKCNVLTYGINNG-----DIQARNIEFNEKGCAT 262

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               + +   +        M         +      +++       +        +    
Sbjct: 263 FDVFRNEEKLLSLSLNVPGMHNVSNSLSAVCLAEIFNINADAIVSGLSSFGGAHKRFEYK 322

Query: 333 ALNQGFFTLIDESYNANPASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   + D +++                  ++    PH   R   +  D  +  +  
Sbjct: 323 GTKNDITVIDDYAHHPVEIKATLSTAKKMNHNKIVCVFQPHTYTRTKTLFNDFVKCFDDC 382

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
               +         ++  +     +   L DA+    +      + +    ++ ++L  G
Sbjct: 383 DELVLMDIYAAREKDLGEI-----NSDQLGDAIRAHGVKCTNVHSHEEALEYVNANLSKG 437

Query: 445 DVVV 448
           D+++
Sbjct: 438 DLLL 441


>gi|163802645|ref|ZP_02196536.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
 gi|159173533|gb|EDP58353.1| fructose-1,6-bisphosphatase [Vibrio sp. AND4]
          Length = 453

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 115/373 (30%), Gaps = 37/373 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEVIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           DS  + +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DSSLQDVIERGC-------WTEKQFSGIDGDWQASKLLVDGSKFEVLLQGE--KVGIVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++           A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVAPELACQALGRFINTKRRLELKGEEQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVW 405
                   +++    +  G+ R +AVL         S +    + +     SL++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGQKRILAVL------EPRSATMKRGVHKNTIAASLHSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           L         V  + +   +         MD     I       D ++V  SN  GF   
Sbjct: 385 LFQPDDIDWSVQDIAEQCQQ--RAFVEADMDTFVAKIVERAQPSDQILV-MSNG-GFGGI 440

Query: 458 -YRLINLLLEEFP 469
             +L+  L ++  
Sbjct: 441 HGKLLEQLKQKAK 453


>gi|311693456|gb|ADP96329.1| UDP-N-acetylmuramate-L-alanine ligase [marine bacterium HP15]
          Length = 481

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 112/390 (28%), Gaps = 36/390 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               V +  S  +P+         +  LA   R R     IA+ G+ GKTTT  ++   L
Sbjct: 91  ENPEVVAARSRRVPIV----PRAEM--LAEIMRYRHG---IAVAGTHGKTTTTSLIASIL 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    +     +               + + E   S    +        P I+V+T
Sbjct: 142 GEAGLDPTFVIGGKLNS---AGTNAQLGGSRYLVAEADESDASFLHLT-----PVISVVT 193

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  + G  E        F        + +   D  +        +  I T    
Sbjct: 194 NIEADHMDTYGGDVEKLKQTFVDFLHNLPFYGVAVMCVDDGYVQEIIPRISRAIITYGID 253

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               +   +            ++       + V     G H   N L  + + +      
Sbjct: 254 NPEADYRAESINSDGLRTHFVVKRPAGRSDLTVELKMPGRHNVLNALAAIAVATDEGVAD 313

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L+ F     R + Y           + + Y  +P  ++A I       P     
Sbjct: 314 DAICRGLAGFAGVGRRFQVYGDYQTPKGTVTLVDDYGHHPTEVEAVIRAAHDAWPDR--- 370

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDALP 419
              V+         ++  + D   VLS   +  + L            G    AL  ++ 
Sbjct: 371 -RLVMLYQPHRFTRTRDLYEDFVRVLSE--VDGLLLMDVYSAGEPAIPGADGRALCRSIR 427

Query: 420 RSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           +   V   + E    +   + + L DGD++
Sbjct: 428 QRGQVEPVFVEDNLEIESLLANVLQDGDLL 457


>gi|325844609|ref|ZP_08168252.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
 gi|325489034|gb|EGC91421.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Turicibacter
           sp. HGF1]
          Length = 449

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 66/417 (15%), Positives = 120/417 (28%), Gaps = 55/417 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKL-------AVAARLRSKATIIAITGSVGKTT 121
           +++ D    + +  IP   V  +L    +L          A    +A  I ITG+ GKTT
Sbjct: 68  LLDRDFDLIVKNPGIPYLKVP-LLKRAQELKIPIITEVELAFEICEAPFIGITGTNGKTT 126

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L              N   V   +A++       + EL    L        L
Sbjct: 127 TTTLIYEMLKESTLN---PLIAGNIGEVATEVAKVAQANQVLVTELSSFQLM----GMPL 179

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP I+++  I  AHL     ++E   AK  + +          N +D        ++ A
Sbjct: 180 FRPRISLLLNITEAHLDYHLNLDEYRQAKLNLIKNQTSDDYCVYNSEDDVIVEGIKQTKA 239

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             I    S           +       +  +  + +           G H  Q++L  + 
Sbjct: 240 TCIPFSLS----------EKVEGAYILEGAVYFKEEWIIDVKDILLKGDHNLQDVLGAVA 289

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +   D++     L  F   + R    +           + S   N  + + A+    
Sbjct: 290 VSLLYGCDLEAIRTVLKRFAGVKHRL---QFVGEIRGVKYYNNSKATNIIATQTALKAFD 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
                     I + G +          H     V     I  +   G      K      
Sbjct: 347 -------SPIILIAGGL-------DRGHDLSGLVPYFNKIKSIVTYGETKHRFKALADEH 392

Query: 422 -IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
            +     + +D          + GD+V+     +S             F  L+  L 
Sbjct: 393 LMPCTVYDHLDQAVEDAYEQAIAGDIVLFAPACASWDQYQNFEQRGDHFIGLVEGLK 449


>gi|218780970|ref|YP_002432288.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
 gi|226711863|sp|B8FBR7|MURC_DESAA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218762354|gb|ACL04820.1| UDP-N-acetylmuramate/alanine ligase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 456

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 72/409 (17%), Positives = 139/409 (33%), Gaps = 56/409 (13%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KG  +VVV           AS     IPV         +  LA   RL+     +AI G+
Sbjct: 63  KGCDVVVVSSAIRQENPETASAREQGIPVI----PRAEM--LAELMRLKYS---VAIAGA 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L++       +        + +         +F + E   S      
Sbjct: 114 HGKTTTTSIVADVLAAGGLDPTVVIGGKL---LSIGSNAKLGHGEFIVAEADES-----D 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                + P IAV+T I   H+ ++  ++EI  A A+  + +   G   L  D    + L 
Sbjct: 166 GSFLKMSPSIAVVTNIDREHMDHYKDMDEIKDAFAQFVDKIPFYGLSVLCLDSEPVQDLI 225

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQN 295
              +        ++G +  AD Q          S   V+   K    +  +  G H   N
Sbjct: 226 PFINK----RYVTYGLTTQADLQAGDVTTEGLTSRFTVRHNKKRLGRITLNLPGLHNVYN 281

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            L ++ +   L    +    AL        R +            ++ + Y  +P  ++ 
Sbjct: 282 SLASIAVGLELNVPFENIKAALESLSGVHRRLETKGKVGG----IVVMDDYGHHPTEIRT 337

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY--NISHVWLS------ 407
            +  ++   P         +G + +    S++    L E  +       ++ +       
Sbjct: 338 TLQAVNDSYPERR------VGVIFQPHRYSRT--QSLFEDFARSFYQADYLVVLPIYPAG 389

Query: 408 -----GFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                G   ++L  AL      HV ++ + +     +  ++ +GD V++
Sbjct: 390 EKPIPGVDSVSLCKALKAYGHKHVIHAPSKESALQELDKTVREGD-VLI 437


>gi|65321239|ref|ZP_00394198.1| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus
           anthracis str. A2012]
          Length = 323

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 102/315 (32%), Gaps = 32/315 (10%)

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
                   N   V   +A+   + +  + EL    L  +     L +P IA    +  AH
Sbjct: 11  QKHPVIAGNIGTVACEVAQDAKENEVVVTELSSFQLMGVE----LFQPKIAAFLNLFEAH 66

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           L      +E   AKA IF+   +     +N DD+    L A S    +    +       
Sbjct: 67  LDYHGTKKEYGLAKANIFKNQTENDYSVINADDADVMALSAYSKGQKVLFSTT------- 119

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
             +  +   C + + +  + +           G H  +N+L  + I  +L    +     
Sbjct: 120 --KEIEDGACIKDNALYFKAEKVVEVDDIVLPGQHNLENILAAMSIAKLLGVSNEAITAV 177

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F   + R                ++S   N  + + A+S  +Q +    G       
Sbjct: 178 LKRFTGVKHRL---EYVTTINNRKFYNDSKATNMLATEKALSAFTQPTVLLAG------- 227

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLF 434
                G    +   DL       N+  +   G     L  A  ++    +   +T+D   
Sbjct: 228 -----GLDRGNEFDDLIPYFK--NVKAIVTFGQTAPKLVRAAEKAGLDTIESVDTLDEAV 280

Query: 435 LFIQSSLVDGDVVVV 449
           +   +   DGDV+++
Sbjct: 281 VKAYAHSTDGDVILL 295


>gi|116071267|ref|ZP_01468536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
 gi|116066672|gb|EAU72429.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. BL107]
          Length = 462

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 96/352 (27%), Gaps = 42/352 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA  A        + ITG+ GKTT   +L+  L               ++GV      +
Sbjct: 101 ELAWDALN--DIPWVGITGTNGKTTVTHLLSHVLEQAGLRAPMG----GNMGVSAAEMAL 154

Query: 157 PVDV------DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +        D+ + EL    +         + P I + TT+ P HL     +E   + K
Sbjct: 155 KIKTGDLLRPDWLVMELSSYQI----EAGPTLAPSIGIWTTLTPDHLERHGTLEAYRAIK 210

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             + +              +  +       +     I+    +   D Q   +      +
Sbjct: 211 RGLLQR-------SSLAIFNGDDADLNAHRSSLKSGIWVQTATPCPDDQPADFWIDDAGT 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               +             G H  QN L+       +  + +   +    F          
Sbjct: 264 IQARESGAMFPADALAMPGAHNRQNQLLVTAAAIQIGLNAEQIAQGFRSFPGVP------ 317

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
              L +   T   + +N    S        +       G  + + G   + G+ +     
Sbjct: 318 -HRLERLGSTASADVFND---SKATNYDAAAVGLQAMAGTVVVLAGGQTKRGDATGWLTE 373

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQS 439
             ++  +      V L G     L   + +S     VH    +         
Sbjct: 374 LKSKACA------VVLFGAGAEELDALIRQSDYQGQVHRCNDLKAAVAIAVQ 419


>gi|28897088|ref|NP_796693.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363959|ref|ZP_05776698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
 gi|260896370|ref|ZP_05904866.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|28805297|dbj|BAC58577.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308085196|gb|EFO34891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus Peru-466]
 gi|308112565|gb|EFO50105.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus K5030]
          Length = 452

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/369 (17%), Positives = 112/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQALTDVLERGC-------WTEKQFSGEDGDWQAHKLVLDGSKFEVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEEQGITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + D   +         MD     I      GD ++V  SN  GF  +
Sbjct: 385 LFQPDNIEWSVQDIADQCKQ--PAFVDADMDNFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 461 INLLLEEFP 469
              LLE+  
Sbjct: 441 HGKLLEQLK 449


>gi|271964372|ref|YP_003338568.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
 gi|270507547|gb|ACZ85825.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptosporangium
           roseum DSM 43021]
          Length = 465

 Score = 50.2 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 107/361 (29%), Gaps = 33/361 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +A+TG+ GKTT   MLT  L++             ++G P+  A  
Sbjct: 92  ELAWRLRPAGAAPWLALTGTNGKTTVVRMLTSMLTAA----GHAALAVGNVGTPVVEAVT 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + EL    L         + PH A +  +AP HL     +EE A  K EIF  
Sbjct: 148 GPADVLAV-ELSSFQLHRS----PSLAPHTAAVLNVAPDHLDWHGSLEEYARVKGEIFTR 202

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T+  N DD +   L A            F     A  Q+   +            
Sbjct: 203 AG---TVVHNADDEWSARLAAPYDGGTGARSVGFTLGVPAPGQVGVVEDLLVDRAFVADP 259

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              + E+         A + +      + +        +A+                + +
Sbjct: 260 ARHAEELASFDDIRPFAPHNVANALAAAAMARSYGVPAEAVRQGLLDFVPDPHRMARVAR 319

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                  +   A      AA            G            G+L  +   DL    
Sbjct: 320 VGEVDYVDDSKATNPHAAAASLAAYPSIVWIAG------------GQLKGADVDDLVRRA 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRS-IHVHYSE-------TMDGLFLFIQSSLVDGDVVV 448
           +   +    L G     ++ AL R   +V   E        MD + +        GD V+
Sbjct: 368 APR-LRGAVLLGADRERIRQALARHAANVPVVEVAGQDTGVMDRVVIEAARLAAPGDTVL 426

Query: 449 V 449
           +
Sbjct: 427 L 427


>gi|282883313|ref|ZP_06291907.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
 gi|281296817|gb|EFA89319.1| bifunctional protein FolC [Peptoniphilus lacrimalis 315-B]
          Length = 434

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 100/317 (31%), Gaps = 33/317 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +    + E+GM    +   +       I++IT+I+  H+       E  S++       +
Sbjct: 133 NCQLVVLEVGMGGRCDSTNIIKAENKLISIITSISYDHMQYLGNTIEEISSEKA-GIICQ 191

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +  N D    ++L+ +         YS       D  ++  K   + S   + L+ 
Sbjct: 192 NGIVVTSNKDKKILKVLQDECKKKNASIYYS------KDLCVKILKSDLQGSKFILNLEK 245

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           K  E+    IG +  +N ++ L  + IL          L      +    + R  L    
Sbjct: 246 KDYEISLDQIGLYQIENSILCLYSLFILIKKALIDFDFLKATKLIKDAKWKGRMDLVSKN 305

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ +    N   ++     L            ++L D     +  +    ++ E+   
Sbjct: 306 PRILLDG-AHNIGGIEKLRDNLKLFYFDKLYLVSSILKD-----KDHKKMLEEIGEIA-- 357

Query: 399 YNISHVWLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                + L      +        K+A      V    ++     +I       D+++V  
Sbjct: 358 ---DLLILVDLESKSNEDIEILEKEAQISVKKVMCKSSLKEALNYIVPMARPDDLILVSG 414

Query: 452 SNSCGFYRLINLLLEEF 468
           S        + L+ E +
Sbjct: 415 S--------LQLIKEFY 423


>gi|268610569|ref|ZP_06144296.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus flavefaciens
           FD-1]
          Length = 471

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 54/407 (13%), Positives = 116/407 (28%), Gaps = 58/407 (14%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +PV    D    L  +         +  I ++G+ GKT+T  M
Sbjct: 76  AAIMADNPELIAAKASGVPVLERAD---LLGIVTSWY-----SNAICVSGTHGKTSTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +T  L +     +            +  + +    D  + E       E         P 
Sbjct: 128 ITQILYTAGVDLSAYIGGKLPC---IGGSGIAGKSDILVCESC-----EFEDHFLKFFPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+VI  I   HL  F  +E I  +  +  E   K   I  + ++S           +  K
Sbjct: 180 ISVILNIDADHLDYFGTLENIIKSFHKFNENTSKCIIINGSDENSM-----KSLEGITGK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +FGK  + D+     K  +        +               +   +     + + 
Sbjct: 235 EIITFGKDSSCDYYPENVKHENGLLTTYDAMYKGEKLGTITLHVAGIHNVLNSLAAVAAA 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-------KAAIS 358
                +       +   +  + +  +    +G   + D +++                  
Sbjct: 295 RYVGAEFDAIQKGLEEFRGAKRRFEKLGFEKGITVVDDYAHHPTELEATLNAAMEMNFNH 354

Query: 359 VLSQISPHGEGRRIAVLGDMCE-------------MGELSQSFHIDLAEVLSLYNISHVW 405
           V +   P    R   +L D                MG   ++ +      L+      VW
Sbjct: 355 VWAVFQPFTFSRTKLLLDDFARVLQIPDHAVLTDIMGSREKNTYGIFTRHLAEKIPDCVW 414

Query: 406 LSGFHVLALKDALPRSIHVHYSETMD-----GLFLFIQSSLVDGDVV 447
                        P+     +++         +  +I     +GD+V
Sbjct: 415 ------------FPQDEQAEWTDERKYANFGQICDYICEHAQEGDLV 449


>gi|153837900|ref|ZP_01990567.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
 gi|149748678|gb|EDM59529.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ3810]
          Length = 452

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 112/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQALADVLERGC-------WTERQFSGEDGDWQAHKLVLDGSKFEVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEEQGITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + +   +         MD     I      GD ++V  SN  GF  +
Sbjct: 385 LFQPDNIEWSVQDIAEQCKQ--PAFVDADMDNFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 461 INLLLEEFP 469
              LLE+  
Sbjct: 441 HGKLLEQLK 449


>gi|260900699|ref|ZP_05909094.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
 gi|308110245|gb|EFO47785.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AQ4037]
          Length = 452

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 112/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    D   +  K   + S  +V LQG+  +V     
Sbjct: 223 DQALADVLERGC-------WTEKQFSGEDGDWQAHKLVLDGSKFDVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEEQGITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + D   +         +D     I      GD ++V  SN  GF  +
Sbjct: 385 LFQPDNIEWSVQDIADQCKQ--PAFVDADIDNFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 461 INLLLEEFP 469
              LLE+  
Sbjct: 441 HGKLLEQLK 449


>gi|322834419|ref|YP_004214446.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
 gi|321169620|gb|ADW75319.1| UDP-N-acetylmuramate/alanine ligase [Rahnella sp. Y9602]
          Length = 495

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 134/413 (32%), Gaps = 53/413 (12%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV+T + +    +       IPV        A   LA   R R     IA+ G+ G
Sbjct: 83  ASVVVVSTAISSDNPEIVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+T   +        +                     F I E   S    +   
Sbjct: 134 KTTTTAMVTSIYAEAGLDPTFVNGGLVK---AAGTHARLGSSRFLIAEADESDASFLH-- 188

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P +A++T I   H+  +    E +          L   G   +  DD     L  
Sbjct: 189 ---LQPMVAIVTNIEADHMDTYQGDFEILKQTFINFLHNLPFYGRAVMCIDDPVIRELIP 245

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      + + ++G S++AD  +  ++Q   +  +   +     + V  +  G H A N 
Sbjct: 246 RV----GRHMTTYGFSEDADVIIENYRQVGAQGHFTLRRQDLPLISVTLNAPGRHNALNA 301

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-----RCALNQGFFTLIDESYNANPA 351
              + + +      D  ++AL+ F     R              +    ++ + Y  +P 
Sbjct: 302 AAAVAVATDENISDDAILRALAGFQGTGRRFDFLGEYALENVNGKTGSAMLVDDYGHHPT 361

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
            + A I        +       V+         ++  + D A VLS   +  + +     
Sbjct: 362 EVDATIKAARAGWANK----RLVMIFQPHRYTRTRDLYDDFANVLSQ--VDVLIMLDVYP 415

Query: 408 -------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  G    +L   +     +       ++ +   +   L   D+V+V+ 
Sbjct: 416 AGEAPIPGADSRSLCRTIRARGKLDPILVSDIEAVPESLAQILEGDDLVLVQG 468


>gi|171057214|ref|YP_001789563.1| UDP-N-acetylmuramate--L-alanine ligase [Leptothrix cholodnii SP-6]
 gi|229620039|sp|B1XYR4|MURC_LEPCP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170774659|gb|ACB32798.1| UDP-N-acetylmuramate--alanine ligase [Leptothrix cholodnii SP-6]
          Length = 469

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 89/494 (18%), Positives = 152/494 (30%), Gaps = 79/494 (15%)

Query: 7   FHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQ-EAFFAIKGPHYDGHDFILHAVQKG 64
             ++L  +     G     G V       R        F         GHD    A   G
Sbjct: 21  IAEILHNLGYTVSGSDQADGAVTR-----RLAELGIRIFV--------GHD---AAHIAG 64

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VV +T +      +       IPV         +  LA   RL+S    IAI G+ G
Sbjct: 65  AQAVVTSTAVKGDNPEVIAARAARIPVV----PRAVM--LAELMRLKSG---IAIAGTHG 115

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++T  L+        +     +              D+ + E   S    +  L
Sbjct: 116 KTTTTSLVTSVLAEAGLDPTFVIGGKLNS---AGANSALGKGDYIVVEADESDASFLNLL 172

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKA 237
                P ++VIT I   H+  +            E    +   G   L  DD     +  
Sbjct: 173 -----PVLSVITNIDADHMDTYGHDFARLKQAFVEFLHKMPFYGAAILCGDDPGVRSIIP 227

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-----EVVHHGIGYHM 292
                 I    ++G  ++   +                 +         E+  +  G H 
Sbjct: 228 MISRPVI----TYGLGEDVQVRAVDVVALPGGQMRFTCQRRNGTVLPDLEITLNLPGVHS 283

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPA 351
            +N L T+ + + L       + AL+ F     R +R+       G    + + Y  +P 
Sbjct: 284 VRNALATIAVATELELPDAPIVSALAKFSGVGRRFQRWGDWPCAAGGEFTLIDDYGHHPV 343

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLSLYNISHVWLSG 408
            M A I+      P        VL         ++    D   +        ++ V+ +G
Sbjct: 344 EMAAVIAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVKVMGSADAILLTEVYAAG 399

Query: 409 FHVLALKDA--LPRSIHVH------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
              +   D   L R++ V       + + ++ L   I    + GDVV+     + G    
Sbjct: 400 EAPIVAADGRSLTRALRVAGKVDPLFVDDVNELPATIAEQALAGDVVI-----AMGAGTI 454

Query: 459 -----RLINLLLEE 467
                R++ L+ E 
Sbjct: 455 GGVPARVVELVKER 468


>gi|326315568|ref|YP_004233240.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372404|gb|ADX44673.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 672

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/367 (13%), Positives = 94/367 (25%), Gaps = 21/367 (5%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  L  +        ++AITG+ GKTT   +  + +    ++ A  G+    + +    
Sbjct: 274 ALAALRESH--GYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTL-LDTLG 330

Query: 154 ARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             +  D      + EL    L           P  A +  I   HL     ++  A AKA
Sbjct: 331 RHLDADTLPQAWVLELSSFQLDGA----TGFEPTAATVLNITQDHLDWHGDMQAYARAKA 386

Query: 212 EIFEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            IF           +    D     ++ K     ++   +FG            +  +  
Sbjct: 387 RIFGQSGLMVLNREDAAVMDMLPPPVRVKLQKPQLRAHVTFGADMPQRPGDFGIETVNGM 446

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +W+    +                      L     L                       
Sbjct: 447 AWLVRAQESDETAKRTRSHAEEDLHIQR--LMPADALRIRGRHNAVNALAALALAHAAGC 504

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE-------MG 382
               +         E +   P      +           G  +A LG +         +G
Sbjct: 505 PFAPMLYALREYRGEPHRVEPLGRVNEVEYFDDSKGTNVGATVAALGGLGADRRVVVILG 564

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSL 441
              +        +     +    L G     ++ AL    + +  + T+           
Sbjct: 565 GDGKGQDFSPLAMPVSRYVRAAVLIGRDAPQIRAALRDAGVPLVDAPTLPEAVRLAAQRA 624

Query: 442 VDGDVVV 448
             GD V+
Sbjct: 625 HAGDAVL 631


>gi|254520544|ref|ZP_05132600.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
 gi|226914293|gb|EEH99494.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Clostridium sp.
           7_2_43FAA]
          Length = 458

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 113/402 (28%), Gaps = 59/402 (14%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
           +  V      +           K  +  ITGS GKTTT  +++  L              
Sbjct: 94  LVKVKSEGAYITSEMEEFVRYCKGKVYGITGSDGKTTTTTIISKLLEEAGYKTWVG---- 149

Query: 145 NHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +IG P  +      + D  + EL    L  +          IAV+T +AP HL     +
Sbjct: 150 GNIGTPLFSNIEEIREEDKVVLELSSFQLMTMDVPV-----DIAVVTNLAPNHLDMHLDM 204

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           +E   AK  I          FL  D     +L  ++         + G  K    +    
Sbjct: 205 QEYIDAKKNI----------FLYQDKDGVLILNRENEITHGFVPEAKGIVKEFSSKREIE 254

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                +  M         E  +  I         +   + +     +D   K    F   
Sbjct: 255 NGAYLKDNMLYLENNIVCEKENIAIKGIHNIENYLAAFLATKDDVSIDVMKKVAERFGGV 314

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           E R                ++S  ++P    A +    +      G              
Sbjct: 315 EHRC---ELVREIDGVKYYNDSIASSPTRTLAGLFAFDKKVILIAGGY------------ 359

Query: 384 LSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDAL-----PRSIHVHY--SETMDGLF 434
                HI    +       I  + L G     +KDA       + I V     +T++   
Sbjct: 360 ---DKHIPFEPLAEEGYPYIKELILLGATKNLIKDAFVKLKEEKGIEVSISLVDTLEEAV 416

Query: 435 LFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
              +    +GDVV +    +S             F  ++N +
Sbjct: 417 FKAKDLADEGDVVTLSPACASFDMFPNFAERGNRFKEIVNKI 458


>gi|237756370|ref|ZP_04584917.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691467|gb|EEP60528.1| UDP-N-acetylmuramate--alanine ligase [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 456

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 71/389 (18%), Positives = 126/389 (32%), Gaps = 45/389 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +   +     L IP           L +L            IAI GS GKTTT  M+   
Sbjct: 78  DNPEMIKAKQLGIPTI----PRGEMLAELMRFKYG------IAIAGSHGKTTTTSMVGTV 127

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L         +                    +F + E   S           + P I  I
Sbjct: 128 LGKTGFDPTVVIGGKLE---AYGSNAKLGRGEFLVTESDES-----DGSFLKLTPTIVSI 179

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             I   H+  +  +E+I  A       +   G   +N DD   + +        IK    
Sbjct: 180 NNIDLEHIGFYKDLEDIKKAFVTFANKVPFYGAAAVNIDDENVKSILPYIERKVIK---- 235

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG S++AD +    +  + +   +V       E+     G H   N L T+ I + L   
Sbjct: 236 FGFSEDADIRAYDLRLENGRYKFKVND---FGEIHLSVPGIHNVYNALATIAICNELNVP 292

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                ++L  F        + R  +      +I + Y  +P  +KA +S         + 
Sbjct: 293 FCVIKESLENFK-----NAKRRFEIKYSNDIVIIDDYAHHPTELKATLSAARDY--FKDR 345

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGFHV------LALKDALPR 420
           R IAV                + A+   + +I+    V+ +G +         L   +  
Sbjct: 346 RIIAVFQPHRY--SRLNVLFEEFAKAFDIPDITIVTEVYSAGENPIENVSGEKLAKKIKE 403

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +V+Y   ++     +++ +  GDV++
Sbjct: 404 YRKNVYYVSNLEEAENLLKNIIQIGDVIL 432


>gi|198282527|ref|YP_002218848.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666253|ref|YP_002424717.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247048|gb|ACH82641.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518466|gb|ACK79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 71/374 (18%), Positives = 118/374 (31%), Gaps = 47/374 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIF 165
           A I+AITGS GK+T   ++     +         +   ++G P    L     + D  + 
Sbjct: 106 APIVAITGSNGKSTVTTLVGEMARAAGLR----AAVGGNLGTPALDLLPETGPEPDLYVL 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L       H   P  A I  ++P HL         A+AK  IF  +    T+ L
Sbjct: 162 ELSSFQL----AACHDFHPRAAAILNLSPDHLDWHGDYAAYAAAKTRIFRAMGAGDTLVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D+F   L  +  A     +  FG +   D  +   + C       + L    +   H
Sbjct: 218 NAGDTFTAALPPQVPAG--VRVQFFGGADEHDASIAGDRLCLRSDGPLLDLDQLPLRGAH 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +      A  +   + +       V    +AL  F     R             +  D+S
Sbjct: 276 NAENALAAALLARAMAV------PVTAIRQALRTFPGLPHRL---ARIAEINGVSYYDDS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S L        G  + +LG   +  +LS     +     +      V 
Sbjct: 327 KGTNLGATLKAMSGL-------PGPLVMILGGDAKGADLSPL--RE-----ACRGQRGVV 372

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------N 453
           + G     +   L   + V  +  M             GD V++    +S          
Sbjct: 373 VLGKDGPQISALLAGILPVESARNMAQAVEKAAVLAQRGDQVLLSPACASTDMFTDYQDR 432

Query: 454 SCGFYRLINLLLEE 467
              F   +  L E+
Sbjct: 433 GRQFAVAVRALTED 446


>gi|89902125|ref|YP_524596.1| UDP-N-acetylmuramate [Rhodoferax ferrireducens T118]
 gi|89346862|gb|ABD71065.1| UDP-N-acetylmuramate [Rhodoferax ferrireducens T118]
          Length = 466

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 105/387 (27%), Gaps = 36/387 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          +IA+ G+ GKTTT  M+      ++      G     + V   ++ 
Sbjct: 101 QWLAEHILQ--GRHVIAVAGTHGKTTTTAMVA---WILECAGLQPGFLVGGVPVNFGVSA 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + E                  RP  AV+  +   H   F  +  I      +
Sbjct: 156 RLGAGRTFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHL 215

Query: 214 FEGLEK-TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
              +             +  E   A+    G  +      +  +DF  R   Q  +  + 
Sbjct: 216 LRTVPGAGPHGSGRVVVNGLEESLARVIHAGCWSEVRSFGAVVSDFTARGEPQEFDVLYQ 275

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              +      +       +    +     +        + A +AL  F   + R +    
Sbjct: 276 NQLVGHVKWALTGVHNQLNALAAIAAAQHV----EVSPEAAARALGSFENVKRRMEIRGS 331

Query: 333 ALNQGFFTLIDESYNANPASMKAAISV--------LSQISPHGEGRRIAVLGDMCEMGEL 384
                    + + +  +P +++  +             ++          LG M      
Sbjct: 332 VQRADGSITVYDDFAHHPTAIRTTVDGLRRKLGPKQRILAVFEPRSNTMKLGTMKAQLPW 391

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           S          L+  +++     G    A +           ++T+D L   + +    G
Sbjct: 392 S----------LADADLAFCHGGGLGWDAREALASMGAKAQVADTIDDLVAQVVAQARAG 441

Query: 445 DVVVVKSSN----SCGFYRLINLLLEE 467
           D ++   SN         +L+  L   
Sbjct: 442 DHIL-CMSNGGFGGVHL-KLLQALENR 466


>gi|304310319|ref|YP_003809917.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
 gi|301796052|emb|CBL44256.1| UDP-N-acetylmuramate-L-alanine ligase [gamma proteobacterium HdN1]
          Length = 480

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 144/413 (34%), Gaps = 44/413 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKAT 109
            I HA +   G  ++VV+T + ++   L       +  V      L +L           
Sbjct: 68  HIGHAAKNVDGTDVIVVSTAIDSANPELDAARERRIPVVPRA-EMLGELMRYRYG----- 121

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELG 168
            IA+ G+ GKTTT  ++   L+        +        +        +    F + E  
Sbjct: 122 -IAVAGTHGKTTTTSLIASILAEGGSDPTFVIGGR----LNSAGTNAKLGTGRFLVAEAD 176

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P ++V+T I   H+S +      +          L   G   L  
Sbjct: 177 ESDASFLH-----LQPMVSVVTNIDFDHMSTYNGDFNRLKETFLRFLHNLPFYGLAVLCV 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHH 286
           DD     +  +     +    ++G    AD Q    +    + ++  ++   +S+ +  +
Sbjct: 232 DDPTIREILPQISRPVV----TYGIDHEADIQAVDIQNVGLQSTYRVLRRDAESLSITLN 287

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + + S      D   +AL  F     R +        G    + + Y
Sbjct: 288 IPGRHNVLNSLAAIAVASDENIAGDAIARALEKFQGVGRRFQIQGEIPIMGGTVTLVDDY 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I+ + Q  P        V+         ++  + D  +VLS  ++     
Sbjct: 348 GHHPREVAATIAAVRQSWPSR----RLVMIYQPHRYSRTRDLYEDFVQVLSDVDVLLLME 403

Query: 404 VWLSGFHVLALKDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G   +A  D+        +  ++   + E    L   ++  L++GDVV+
Sbjct: 404 VYSAGEEPIAGADSRSLCRSIRMRGAVEPIFIEEPSVLPSVLEKHLLNGDVVL 456


>gi|300726291|ref|ZP_07059744.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
 gi|299776488|gb|EFI73045.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bryantii B14]
          Length = 458

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 111/339 (32%), Gaps = 30/339 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKN--YGTNYILSDKSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++  G + ++ +  
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQDGGALIIHTN-- 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ K +       +++ + +             E ++  V        +       
Sbjct: 226 ----LEVKPNVSDKVKTFTYSRDEGDFHAENININNGEITFDLVSPIENVKGIQLGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R       +       + + Y  +P
Sbjct: 282 INIENSIAAMAMAQLNGCTAEELKYGMQTYTGVDRRFD---FKIKNNKHVFLSD-YGHHP 337

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVWLSG 408
             +  +   L ++ P+ +      +  M +  +   ++ F+ D AE LSL     V L+ 
Sbjct: 338 KEVMQSAKSLKELYPNRK------ITAMFQPHLYTRTRDFYKDFAEALSL--FDEVVLT- 388

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               A ++ +P        + +       +  ++  DV+
Sbjct: 389 EIYPAREEPIPGVTSKLIYDNLKEGIE--KDMILKDDVL 425


>gi|251797876|ref|YP_003012607.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
 gi|247545502|gb|ACT02521.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus sp.
           JDR-2]
          Length = 473

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 111/356 (31%), Gaps = 35/356 (9%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFE 166
           A II ITGS GKTTT   +   L               +IG+PL  A       ++ + E
Sbjct: 112 APIIGITGSNGKTTTTTWIGKLLGEAGLN----PIVAGNIGIPLCEAAAEATKDNWIVAE 167

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T   RP IA++  IA  HL    G+E+  ++KA++F          LN
Sbjct: 168 LSSFQL----KGTSSFRPRIALLLNIAETHLDYHGGMEDYVASKAKLFANQTADDVAVLN 223

Query: 227 Y----DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +      +  + L AK     +      G      F+  K            +   +   
Sbjct: 224 WDDATCRAIADQLAAKLLPFSLYVRLDQGICIEPPFERGKDSDKEHMIVWRKEDGTEQAI 283

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +    +G     N    L  ++   A        L       G   R   A         
Sbjct: 284 LPVSALGLPGRHNAGNALAAIAACLAAGVAPEAMLPALQGFRGVEHRLEYAGEFNGVNYY 343

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   NP +   ++  L           I + G     G    S +++L  V     + 
Sbjct: 344 NDSKATNPMATTMSVGSL-------GAPIILIAG-----GLDRGSDYMELLPVFRDR-LK 390

Query: 403 HVWLSGFHVLAL--KDALPRSIHVHYSE-------TMDGLFLFIQSSLVDGDVVVV 449
            +   G     L     L    +V   E       T+             GD+V++
Sbjct: 391 GLVTLGQTREKLGKVAELAGLTNVRLVEPEEDAESTLRRAVREAAGLAEPGDIVLL 446


>gi|308272541|emb|CBX29145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [uncultured Desulfobacterium sp.]
          Length = 481

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 108/307 (35%), Gaps = 35/307 (11%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P IA++T+I   H   F  +E +    + + E +    ++ +   D+  + L     
Sbjct: 188 HFDPLIAILTSIEFDHADIFRDLEHVKETFSRMIEKISPGSSLIVFDRDTNIKSLIRN-- 245

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
                 I  +GK+ ++D++L  ++     ++ EV  +GK+        IG H   N L  
Sbjct: 246 --SSCKIEKYGKNSDSDWKLGSFRVEPPWTFFEVMKKGKAFGSFKTKLIGEHNLLNALSV 303

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +     L   VDT   AL  F   + R    +    +     + + +  +P ++K  I  
Sbjct: 304 IAAADNLKVPVDTIHDALETFEGVKRR----QEIRGERKGITVMDDFAHHPTAVKETIKA 359

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH--VWLSGF-------- 409
           +    P  +GR IAV          + S    + + +   +     +             
Sbjct: 360 VRPFYP--DGRVIAVF------EPRTNSSMRKVFQDVYPLSFDKADIVCISKPPLLGKIP 411

Query: 410 -----HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                    L   L       ++      +  FI  +   GD+V++  SN  GF  +   
Sbjct: 412 FDERFSSEKLVQDLKIMGKDAYFFSNTQAIIDFIVKAGKSGDLVLI-MSNG-GFENIHER 469

Query: 464 LLEEFPA 470
           LL    A
Sbjct: 470 LLAALGA 476


>gi|149927202|ref|ZP_01915459.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
 gi|149824141|gb|EDM83362.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Limnobacter sp. MED105]
          Length = 451

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 57/373 (15%), Positives = 102/373 (27%), Gaps = 24/373 (6%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGIFE 166
            ++A+ G+ GKT+T  ML   L                 GVP    ++      D  + E
Sbjct: 92  KVLAVAGTHGKTSTSSMLAWVLQQAGLNP-----GFLIGGVPGGFGVSATLGQGDCFVIE 146

Query: 167 LGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                             RP +AV+  +   H   F  +  I +    +   +   G + 
Sbjct: 147 ADEYDTAFFDKRSKFVHYRPVVAVLNNLEFDHADIFPDLAAIETQFHHLVRTVPSEGRVV 206

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              +    E +  +     +    + G     D    +        +  +       +V 
Sbjct: 207 CPANTESLERVLKRGCWTPVARFSANG-----DEAPWQAHVLGASRFEVLMHGEVKGQVE 261

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +     +   V  A  ALS F   + R +    A     +     
Sbjct: 262 WDWSGLHNVNNALAVIAAAHAVGVKVADACNALSAFPGVKRRMELRGEAAGVRVYDDFAH 321

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS---FHIDLAEVLSLYNI 401
            +    A+                G+    L  + E    +         L         
Sbjct: 322 -HPTAIATTLEGAKARMAEIALANGQPAGRLIALFEPRSNTMKMGTLAQALPASFDEAQA 380

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
              + +G               +  S+ ++ +   + S    GD V V  SN   F    
Sbjct: 381 VVCYTAGIQWNVRDTLGSVGERLFTSDNLNEVIDHVVSQAQPGDWV-VAMSNGS-FGGIH 438

Query: 459 -RLINLLLEEFPA 470
            +LI+ L     A
Sbjct: 439 QKLIDALASRVKA 451


>gi|326791416|ref|YP_004309237.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
 gi|326542180|gb|ADZ84039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           lentocellum DSM 5427]
          Length = 457

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 110/355 (30%), Gaps = 30/355 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A       KA IIAITG+ GKTTT  ++   +     +   +G+        +     
Sbjct: 102 EFASWY---CKAPIIAITGTNGKTTTTTLVGEIMKKYNPSTYVVGNIGRAFSEEVLQI-- 156

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             +    + E+    L           P I+ +  I P HL+    +E   + K  IF+ 
Sbjct: 157 -PENGIVVAEVSSFQLETAD----TFHPFISALLNITPDHLNRHHTMENYCACKYNIFKN 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
             + G   LN  D ++E  K +  A       SF   +  D            +  E   
Sbjct: 212 QPEEGYSLLNTKDHYYEEAKKQVKA----RCMSFSLQEIPDC----GAYVQADTLYENVH 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +      N+   L  +++  A          V    +G   R    L +
Sbjct: 264 GTAHAICKIEDLHIKGTHNVENALAAIAMAAAFGVPGNLIREVLTTFKGVEHRTEYVLTK 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                 ++S   N  +  A +  LS +          + G M       Q+   D  +  
Sbjct: 324 RGVDFFNDSKATNTDAAIAGLVGLSSL----NKPIRLIAGGM-----DKQTSFKDWIKHF 374

Query: 397 SLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  V++ G     +           V   ET++       +     + +++
Sbjct: 375 NGL-VEKVYIIGETKQQIVKECLEEGFTQVATFETLEDAIKAAYNESKANECILL 428


>gi|312881956|ref|ZP_07741713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370392|gb|EFP97887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 450

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 113/362 (31%), Gaps = 23/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  MLT      K  Y         +G     AR+   V F +     
Sbjct: 105 VLAVSGTHGKTTTASMLT--WILEKCGYEPGFLVGGVLGNFGVSARLGKSVFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPKTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPSVGRILFPQQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + + ++         +S  +S       +  KQ ++ S   V  +GK +       
Sbjct: 223 DQEIKDVLSRGC-------WSESESSGIGGDWQAEKQHADGSQFAVFFEGKKVA--SVNW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++         + A           +R           + D+  + 
Sbjct: 274 NLIGNHNINNALMAIAAARHVGVEPLHACEALDTFINTKRRLELKGMVNGVEVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A        L  +     G+RI  + +              LA  L       V+L  
Sbjct: 334 PTA----IELTLESLRNKASGKRIIAVLEPRSATMKRGVHKNSLARSLDEA--DAVFLYQ 387

Query: 409 FHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              +  +L+D   +       S+ ++ L   + + +  GD + V  SN  GF  +   LL
Sbjct: 388 PDNINWSLEDVASQCRGEAAVSDNIEELVAAVTTFVQSGDRICV-MSNG-GFDDIHTKLL 445

Query: 466 EE 467
            E
Sbjct: 446 TE 447


>gi|304310316|ref|YP_003809914.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
 gi|301796049|emb|CBL44253.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [gamma
           proteobacterium HdN1]
          Length = 442

 Score = 50.2 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 126/418 (30%), Gaps = 54/418 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVF----GVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           GA  ++V+  +  +   L   V      V D+               K  I+AITGS  K
Sbjct: 61  GAEEIIVSPGISTATAPLQKAVARGIPVVGDI--------ELFCREVKTPILAITGSNAK 112

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFL 178
           +T   ++   +    ++         +IGVP+    +     +F + EL    L      
Sbjct: 113 STVTTLMGEMVKGSGRSVVVG----GNIGVPVLDVLQEAQSAEFCVLELSSFQL----ET 164

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
           T+ +R H+A I  I+P HL  +  ++E  +AK  I+             +      L   
Sbjct: 165 TYSLRAHVATILNISPDHLDRYPSMKEYTAAKHRIYRNARH-----TVANADDSATLPHP 219

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                     +         +    +     SW+ V  +           G H   N L 
Sbjct: 220 MFTEHDWRFTTRS----PSARTFGLQLNESASWLGVANEALMPVSELRIKGRHNQANALA 275

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L I S    ++   +  L  F     R         +      ++S   N  +    ++
Sbjct: 276 ALAIGSAAGLEMQHMLNTLREFRGLAHRC---EWIRERDGVQWYNDSKGTNVGAT---VA 329

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            +  I     G+ + V G   + G         + + +         L G     ++  L
Sbjct: 330 AIDGIGSEISGKIVLVAGGDGK-GADFVELQKPVEKYVKAA-----VLLGQDAAKMERVL 383

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                +    ++           + GD V++    +S             F  L   L
Sbjct: 384 APHCTIKRVSSLQDAVGAAAELALAGDAVLLSPACASLDMFKNYEDRGNQFADLARAL 441


>gi|307132698|ref|YP_003884714.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
 gi|306530227|gb|ADN00158.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Dickeya dadantii 3937]
          Length = 460

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 107/361 (29%), Gaps = 22/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAI G+ GKTTT  M+T         Y          G     AR+     F +     
Sbjct: 105 VIAIAGTHGKTTTAGMVT--WILEDCGYQPGFVIGGVPGNFTVSARLGESPFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I +   
Sbjct: 163 DCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPSH 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +         + +   G  K       K        +          EV  + +
Sbjct: 223 DLHLKQVMGMGCWSEQELVGEEGIWKA------KKVTTDASVFQVYLNDQLVGEVSWNLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A           +R            + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVTPAEACRA----LGGFINARRRLELRGTAHGVSVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P ++ A ++ L        G    +L  +       +  H       +L     V+L  
Sbjct: 333 HPTAILATLAAL----RSKVGGTARILAVLEPRSNTMKMGHCKNELAPALGRADGVFLFQ 388

Query: 409 FH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                    + A       ++S  +D L   I  +   GD ++V  SN  GF  + N LL
Sbjct: 389 PQHIPWQVAEVADACVQPAYWSADIDTLVEMISKTAQPGDHILV-MSNG-GFGNIHNKLL 446

Query: 466 E 466
           +
Sbjct: 447 D 447


>gi|259503032|ref|ZP_05745934.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
 gi|259168898|gb|EEW53393.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Lactobacillus
           antri DSM 16041]
          Length = 459

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 127/419 (30%), Gaps = 58/419 (13%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGA--------LNKLAVAARLRSKATIIAITGSVGKT 120
           + + D    + +  IP    D+ L A        +   A          ++++TGS GKT
Sbjct: 69  LADRDFAVVVKNPGIPY---DNPLVAKFVEKGTPIITEAELGWEIFAGHLVSVTGSNGKT 125

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLT 179
           TT  +  + L+           Y  +IGV  +     +   D  + EL    L       
Sbjct: 126 TTTTLTQLMLAKSSTHNV---KYAGNIGVSFSKVAEDLGPDDTLVTELSSFQLLGA---- 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             + PHIA+IT I   HL      E   +AK  I         + +N+D   ++ +  ++
Sbjct: 179 PTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTPDDFLIMNWDRDEWQEIARRT 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            A  +                 +     E   +  + +          IG    +N L  
Sbjct: 239 RATVVPFSR---------QNKSQAGAYEEDGVIYWRGERIMAAKDIRLIGPQNVENALAA 289

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +        +  L+ F     R    +  L+       ++S + +  + + A+  
Sbjct: 290 VAAAKLSGVSNADIVSVLTTFSGVRHRL---QYVLDYQGRRFYNDSKSTDIEATEVALQG 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
             Q      G            G         L       ++  + + G     +K+A  
Sbjct: 347 FEQPVILLAG------------GLDRGYTFERLVPYFKQ-HVKGIIVFGQCKDKMKNAAE 393

Query: 420 RSIHVHYSETMDG--LFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLL 464
           ++      E+ +              GDV+++    +S             F   +  L
Sbjct: 394 QAGIPTIIESENAVTAVPEAWKISAPGDVILLSPANASWDQFPSFEVRGDRFIEAVEKL 452


>gi|160895297|ref|ZP_02076068.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
 gi|156862990|gb|EDO56421.1| hypothetical protein CLOL250_02856 [Clostridium sp. L2-50]
          Length = 451

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 118/392 (30%), Gaps = 45/392 (11%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V++  V  +    IPV+       +  +LA       K  I AITG+ GKTTT  ++   
Sbjct: 79  VDSAFVEEVKKAGIPVW-------SEIELAYYF---GKGKIAAITGTNGKTTTTALVGEI 128

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAV 188
           + +    +        +IG+P T      D D   + E+    L           P+++ 
Sbjct: 129 VKA----WNPKTIVVGNIGIPYTELCDTTDDDSATVAEISSFQL----ETIVDFHPNVSA 180

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  + P HL+     E   + K  I +   +   + LNYDD     +        +    
Sbjct: 181 VLNLTPDHLNRHYTFENYGNVKKSITKNQTEEDVVVLNYDDEHTRAMAEGIRPRVVYFSR 240

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                     +        +          K   +    +    A N+   L  V I   
Sbjct: 241 L--------EKPAGGVYVEDGHIKIEANGEKIDVLALKDLILLGAHNVENVLAAVGISYY 292

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                     V    +    R             ++S   NP +    I  + + +    
Sbjct: 293 MGVPVNIIRDVAVSFKAVEHRIEYVKTVAGVDYYNDSKGTNPDAAIKGIQAMVKPTYLIG 352

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHY 426
           G            G    S + +  +      +  + L G     + +   +    ++ +
Sbjct: 353 G------------GYDKGSTYDEWID-AFDGKVRCLVLIGQTAKKIAETAKKHGFHNIVF 399

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSSNSC 455
            + +     +   +  DG+ V++    +S   
Sbjct: 400 EDDLLEAVKYCHENAKDGEAVLLSPACASWGM 431


>gi|332653273|ref|ZP_08419018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
 gi|332518419|gb|EGJ48022.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Ruminococcaceae
           bacterium D16]
          Length = 460

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 70/392 (17%), Positives = 129/392 (32%), Gaps = 51/392 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL+           + ++A+TGS GKTTT  +++  L    KT         +IG PL 
Sbjct: 100 AALSSEMEVFFQTCPSHLVAVTGSDGKTTTTTIISEFLKEAGKTVYVG----GNIGKPLL 155

Query: 153 LARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                +D + + + EL    L  +        P+IAVIT +AP HL     +EE  +AK 
Sbjct: 156 PDVADMDPEDYAVLELSSFQLMTME-----QSPNIAVITNLAPNHLDYHHTMEEYTNAKK 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF    +   + LNYD+     + A++               +   +L +     + + 
Sbjct: 211 NIFLHQGEGDRLILNYDNEVTRSMAAEAVCPV--------TWFSRKERLEEGVYLRDNAI 262

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                 G    +    I      N+             +       +V     G   R  
Sbjct: 263 WLTNEMGSREVLPLSDIQLPGVHNIEN-YMAAIAAVDGLVPDKCVRAVARRFHGVEHRIE 321

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                      ++S   +P+   A +   +Q      G            G         
Sbjct: 322 LVRELDGVKYYNDSIGTSPSRTTACLESFNQKIILIAG------------GYDKGVPFTQ 369

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS----IHVHYSETMDGLFLFIQSSL---VDG 444
           L   +   ++  ++L+G    A++ A+ ++             + L   + ++      G
Sbjct: 370 LGVEIV-GHVKALFLTGNTAGAIRQAVEQAPGYAESGMILAETEDLAAAVAAARQAAKPG 428

Query: 445 DVVVV---KSS---------NSCGFYRLINLL 464
           DVVV+    ++             F +L+  L
Sbjct: 429 DVVVLSPACAAFDHFKNFMERGQVFKKLVQEL 460


>gi|281413643|ref|ZP_06245385.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Micrococcus luteus
           NCTC 2665]
          Length = 475

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/413 (14%), Positives = 117/413 (28%), Gaps = 57/413 (13%)

Query: 64  GAGL--VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATI---IA 112
           GA    VV +              +   P++   DV     +LA   R R+       + 
Sbjct: 47  GAAADLVVTSPGWRPDQPLLMAAHAAGRPIW--SDV-----ELAWRLRERAGRKTADWVC 99

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-TLARMPVDVDFGIFELGMSH 171
           +TG+ GKTTT  M+   L +             ++G P+    R P   D    EL    
Sbjct: 100 LTGTNGKTTTVTMVEAILRA----DGRRAVACGNVGTPVLDAIRDPQGFDVLALELSSFQ 155

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
           L     L     P  + +  +A  H+     +EE A+AK +++               + 
Sbjct: 156 LHWTHGLA----PASSAVLNLAEDHVDWHGSMEEYAAAKGKVYANTRVACVFNEQDPLTR 211

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
             + +A          ++      +D  +              + +  ++          
Sbjct: 212 TLVERADVQEGCRAIGFTTDTPGLSDIGVVDGILVDRAFLDNRRHEAIALAERADLGPVA 271

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
               M       ++  A   +           +    R +          +++S   NP 
Sbjct: 272 PRHTMANAAAAAALTRAVGVSPAAVAEGLRSYDRGEHRIQLVATSRDIMWVNDSKATNPH 331

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
           +  A+++  S +     G    V            ++H  +A     + +  V L G   
Sbjct: 332 AADASLAAFSSVVWLAGGLPKGV------------TYHELVAAHA--HRLRAVVLLGRDT 377

Query: 412 LALK----------------DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            AL+                 A   +     +  M             GD V+
Sbjct: 378 SALRAALAAHAPDVPVHAPLAAADGTGPADGAAVMAEAVRVADGLARPGDTVL 430


>gi|134102298|ref|YP_001107959.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291003739|ref|ZP_06561712.1| UDP-N-acetylmuramate--L-alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
 gi|189029030|sp|A4FLV9|MURC_SACEN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|133914921|emb|CAM05034.1| UDP-N-acetylmuramate--alanine ligase [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 490

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 149/438 (34%), Gaps = 54/438 (12%)

Query: 33  DSRSI---APQEAFFAIKGPH------YDGHDFILHAVQKGAGLVVVNTDMVASIGSLSI 83
           DSR++     Q A  A+ G        +DG              VVV+T +      L  
Sbjct: 56  DSRTVLALKAQGAHIAL-GHRAENIEQFDG----------DPTAVVVSTAIRRDNPELVA 104

Query: 84  PVFG-VDDVL--GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
                V  +    AL  L    R      +  + G+ GKT+T  MLT+AL   +   +  
Sbjct: 105 AQERGVPVLRRAEALAALMADHR------VACVAGTHGKTSTTSMLTVALQHCRLDPSFA 158

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
              + +            D    + E   S          +  P +AV+T + P HL + 
Sbjct: 159 IGGDLNE---SGANAHHGDGGVFVAEADES-----DGSFLVFAPSVAVVTNVEPDHLDHH 210

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-NADFQ 259
              E          E +E  G +    DD+   LL  ++ A G++      +   + D +
Sbjct: 211 GTAEAYTEVFQRFVERIEPGGVLIACADDAGAALLADQAEAAGVRVRRYGHEVTADGDAR 270

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
           +  ++       + V++ G  ++V     G HMA N +  L     L A ++  ++ L+ 
Sbjct: 271 MVGYRPEHGSGVVTVEVSGDRLDVQVAVPGEHMAANAVAALLAGLELGAPLEGLLEGLAA 330

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     R              + D+  +      +    + +     G+GR + V     
Sbjct: 331 FGGVRRRF---EFKGRADGVRVYDDYAHH---PTEVDAQLRAARPVVGDGRLVVVFQPHL 384

Query: 380 --EMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALP-RSIHVHYSETM 430
                  S  F   L  +     +  V+ +      G     + +++P  +  VHY  + 
Sbjct: 385 YSRTAAFSGEFATALG-LADEVVVLDVYGAREDPQPGVTGELIAESVPLPAERVHYEASF 443

Query: 431 DGLFLFIQSSLVDGDVVV 448
                 +   +  GD+V+
Sbjct: 444 TAAAPLVAGLVQPGDLVL 461


>gi|62178693|ref|YP_215110.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|224581969|ref|YP_002635767.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|75484866|sp|Q57TD2|MURD_SALCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62126326|gb|AAX64029.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466496|gb|ACN44326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322713146|gb|EFZ04717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 438

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 118/375 (31%), Gaps = 48/375 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  I+AITGS GK+T   ++     +             +IG+P  +  +  D +
Sbjct: 99  FCREAQEPIVAITGSNGKSTVTTLVGEMAKAAGVNV----GVGGNIGLPALML-LDADRE 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  ++   A +  +   H+  +           + +   +   
Sbjct: 154 LYVLELSSFQL----ETTSSLQAAAATVLNVTEDHMDRYP-------FGLQQYRAAKLRV 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                      +           +   SFG +       R+  +   +   E  L  K M
Sbjct: 203 YEKAKVCVVNADDALTMPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEM 262

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++       +    + +   +             +L       G   R++ AL       
Sbjct: 263 KLSGQHNYTNALAALALADAVGL-------PRASSLKALTTFTGLAHRFQLALEHNGVRW 315

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA++ L     H +G    +LG   +  + S        + +     
Sbjct: 316 INDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSPLTRYLTGDRI----- 365

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L  AL   I    +ETM+     +   +  GD+V++    +S      
Sbjct: 366 -RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPRVQPGDMVLLSPACASLDQFKN 422

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 423 FEQRGDVFTRLAKEL 437


>gi|299065609|emb|CBJ36781.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CMR15]
          Length = 483

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 132/405 (32%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGF- 409
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVYAAGEP 402

Query: 410 -----HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                   AL  AL  +  +   + E ++ +   I  +  D DVV
Sbjct: 403 PIVAADGRALTRALRVAGKIEPIFVEQIEDMPQAILDAAQDNDVV 447


>gi|256832304|ref|YP_003161031.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
 gi|256685835|gb|ACV08728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Jonesia
           denitrificans DSM 20603]
          Length = 502

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 121/380 (31%), Gaps = 42/380 (11%)

Query: 97  KLAVAAR-----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R         A  +A+TG+ GKTTT E+L   L +     A +     ++G P+
Sbjct: 102 ELAWQLRVNNEHTNKPAPWLAVTGTNGKTTTVELLATILHADGLRVATV----GNVGAPV 157

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                   +D  + EL    L       + + P  + I  IA  H+      ++ AS KA
Sbjct: 158 IRQIQNPTIDVFVLELSSFQLHFT----YSMEPLASAILNIAEDHVDWHGSFDQYASDKA 213

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF        ++   DD    LL       G + I    +S              ++++
Sbjct: 214 RIFTH-THRACVYSEGDDRVVRLLHEADVHPGARAISVSAESPTPSSLGIVDGVLCDRAF 272

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----- 326
            E     +               ++    G+V   T        AL+  +    R     
Sbjct: 273 TEPLTGPQRYRHAAELAQLSDLAHLAGPDGVVGSHTITNTLFAAALARAYGVAPRAVRDG 332

Query: 327 ---GKRYRCALNQGFFTLIDESYNA-----NPASMKAAISVLSQISPHGEGRRIAVLGDM 378
               +  R  +        +++  +     N +    A +  + +        + ++G +
Sbjct: 333 VKSFQPGRHRIEHVATVAKNDAPQSGVTFINDSKATNAHAARASLLSLPLSSTVWIVGGV 392

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSET---- 429
            + G    S   ++   L         + G     +  A  R      +HV  ++     
Sbjct: 393 TK-GANLDSLIAEIGPQLRSA-----VVIGVEHQEIVRAFARHAPHIPVHVASADDTGGV 446

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           M         +   GDVV++
Sbjct: 447 MRHAVNTAWKAAEPGDVVIL 466


>gi|160873536|ref|YP_001552852.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           baltica OS195]
 gi|160859058|gb|ABX47592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella baltica
           OS195]
 gi|315265766|gb|ADT92619.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Shewanella baltica
           OS678]
          Length = 439

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 130/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   V     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ATQIIISPGIATYTPEVRAAVDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++               +   +IGVP     +  + D  + EL    L      TH
Sbjct: 122 TVTTLVGEMAREAGIAV----AVGGNIGVPALDL-LHENADLFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++  +A    I+  H+  +S I     AK  +++          +      E +   S 
Sbjct: 173 SLKCVVATCLNISEDHMDRYSDIAAYREAKLRLYKQSRAVLFNRDDKLTVPPEPMNQNSF 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
            L       +G                  S +               IG H   N+L  +
Sbjct: 233 GLAAPEADEWGI---------------SDSKIYHGSSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V ++  D     K    F     R         +   T +++S   N  +  AA+  L
Sbjct: 278 ALVDVVGVDKQVMAKVARSFTGLSHRC---EVVGIKNGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G     G+   +    L   ++L  ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAG-----GDGKGADFKPLG--VALAKVTHLITLGRDGKKIAALKDG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           ++ V   ETM             GD+V++    +S             F  L+  L
Sbjct: 384 AVRV---ETMAAAVAKAAELATSGDIVLLSPACASLDMYSNFMARGDDFRNLVEQL 436


>gi|17547562|ref|NP_520964.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           GMI1000]
 gi|25008811|sp|Q8XVI8|MURC_RALSO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17429866|emb|CAD16550.1| probable udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 483

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 132/405 (32%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGF- 409
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVYAAGEP 402

Query: 410 -----HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                   AL  AL  +  +   + E ++ +   I  +  D DVV
Sbjct: 403 PIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVV 447


>gi|91205778|ref|YP_538133.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii RML369-C]
 gi|109892734|sp|Q1RHX0|MURC_RICBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91069322|gb|ABE05044.1| UDP-N-acetylmuramate--alanine ligase [Rickettsia bellii RML369-C]
          Length = 478

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 122/410 (29%), Gaps = 51/410 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A+ +       N   V       IP+        A   LA   RL+     +A++GS
Sbjct: 78  VSSAINR-------NNPEVKEALERKIPII-----RRA-EMLAELMRLKCS---VAVSGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++     +       I     +     +        ++ I E   S      
Sbjct: 122 HGKTTTTSLVACLFEAAGLHPTVINGGIINN---RSTNAYLGSSNYLIAEADES-----D 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   IA+IT I P HL  +   + + +A       L   G      D      L 
Sbjct: 174 ATFISIPSTIAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVRELV 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                  + T        +                 + S   V       ++     G H
Sbjct: 234 NNITERKVITYGIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTIIEKITIPTPGRH 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   +       + F   + R       + +     + + Y  +P 
Sbjct: 294 NILNSLAAISVGVELDFGIKAIKNGFNSFKGVKRRFT----KVAEYNQASVIDDYAHHPE 349

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWL 406
            +KA +S    I+    G+ IA+     +    S+  H+        +   L  I+ V+ 
Sbjct: 350 EIKATLSTAKNIANKQHGKVIAIF----QPHRYSRMQHLFDDFMRCFDDADLLYITDVYA 405

Query: 407 SGFHV------LALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +G          +L D    L      ++   +D     I +    GD++
Sbjct: 406 AGESPIEGISGQSLIDNIIKLKYHNQANFLAKLDDSLEVIMNKASPGDMI 455


>gi|37528368|ref|NP_931713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase (murein peptide ligase)
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36787806|emb|CAE16921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 456

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 112/364 (30%), Gaps = 26/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +      +    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMLA---WILEACGYKPGFLIGGVPGNFETSAQIGESPFFVIEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   ++  +   H   F  +  I      +   +  +G I +  
Sbjct: 162 YDSAFFDKRSKFVHYSPRTLIMNNLEFDHGDIFGDLAAIQRQFHHLVRIVPGSGKICVPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + +      ++ +   G  +                           EV    
Sbjct: 222 NDVNLKQVLSMGCWSELELVGETGNWQAKKISTDSRHYQV------FYGGKVVGEVNGSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H  +N L+ +     +      A  ALS F       +R      +   T+ D+  +
Sbjct: 276 VGEHNMRNGLIAIAAAHHVGVQPADACCALSEF---INARRRLELRGEENGVTVYDDFAH 332

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
              A     ++ L  +     G    +   + E    +    +   E+         V+L
Sbjct: 333 HPTA----ILATLEALRSKVGGTARII--TVLEPRSNTMKMGVSKNEIAPALGRADEVFL 386

Query: 407 SGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               ++      +        ++S  +D L   I      GD ++V  SN  GF  +   
Sbjct: 387 FQPANIKWHVSEIADHCVQPAYWSADIDSLVHMIVDKAQQGDHILV-MSNG-GFGDIHEK 444

Query: 464 LLEE 467
           LL +
Sbjct: 445 LLSK 448


>gi|126461548|ref|YP_001042662.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|158513433|sp|A3PHS4|MURD_RHOS1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|126103212|gb|ABN75890.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 465

 Score = 50.2 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 116/395 (29%), Gaps = 35/395 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAIT 114
             ++V +  +  +     PV            +D+       A            ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +          +IG  +       D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGR----PTQMAGNIGRGVLDLDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F        +    +     L
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLYL 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A     +      +  +                 + +  +   +    G   A 
Sbjct: 239 AGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLPGAH 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +          +  +      G   R +    +G    +++S   N  S  
Sbjct: 299 NHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGGVRFVNDSKATNVDSAA 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+    +I     G     LG   + G  +   H  L  V+        +L G      
Sbjct: 359 KALQAFPKIRWIAGG-----LG--KDGGIAALQPH--LGSVVKA------YLIGHSARDF 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + H    ETM+            G+VV++
Sbjct: 404 ALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|325518027|gb|EGC97835.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia sp. TJI49]
          Length = 465

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 89/412 (21%), Positives = 145/412 (35%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARAKRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  + ++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAENVDARDGRMHFTVIRERRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY       G    + + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGHYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A I+      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL  +  V   +  ++D +   +     +GDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRTAGKVDPVFVASVDEVPDALAKVAQNGDVV 442


>gi|302391529|ref|YP_003827349.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203606|gb|ADL12284.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acetohalobium
           arabaticum DSM 5501]
          Length = 454

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 101/325 (31%), Gaps = 43/325 (13%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D G+    +S            RP I++I  + P HL+     E+  +AK +IF    +
Sbjct: 156 TDKGVVVAEISSF--QLENIRDFRPKISLILNLTPDHLNRHGTFEDYIAAKKKIFINQTE 213

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +    LNYDD     L  ++    I          +   +L      +E   +       
Sbjct: 214 SDYTVLNYDDELTRGLADETGGEVIY--------FSQQSRLNHGIYAAEGKIINNLTADN 265

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G     N+   LG V I             V     G   R          
Sbjct: 266 EPLIQIDETGIKGPHNLENALGAVVIALLRGIDVKIIRKVLQEFSGIEHRIEEVATIEGI 325

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM---CEMGELSQSFHIDLAEVL 396
             I++S   NPA+   A+   S            + G M    E+ + +           
Sbjct: 326 KYINDSKATNPAAAIKALETFSA-------PITLIAGGMDKKAELTDFAFKI-------- 370

Query: 397 SLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
              N+ ++ L G     +++++   R  ++   +++       +   V G +V++    +
Sbjct: 371 -EENVQNLILLGETAEKIEESVTEFRFSNIKQVDSISEAVKEAEEVSVKGSIVLLAPGCA 429

Query: 452 S---------NSCGFYRLINLLLEE 467
           S             F + +  L  +
Sbjct: 430 SWDMFGSYKERGNRFKKEVMELRRK 454


>gi|254282975|ref|ZP_04957943.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
 gi|219679178|gb|EED35527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium NOR51-B]
          Length = 442

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 55/366 (15%), Positives = 115/366 (31%), Gaps = 26/366 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  +L      ++      G     +     ++      DF + E   
Sbjct: 93  VLAVSGTHGKTTTTSLLA---WILEYAGMDPGFLVGGVPANFGVSARLGGSDFFVVEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          +P   +I  +   H   F  +  I      +   + + G I  + 
Sbjct: 150 YDTAFFDKRSKFIHYKPRTLIIGNLEYDHADIFPDLAAIEQQFHHLIRCVPEQGHIIHDG 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +   +L+            + G+  + ++  +         ++     G+S  V    
Sbjct: 210 SAAVQRVLERGCWTPAA----TVGQQPDCNWSWQ-VIAGGGGEFVLKAPDGQSHSVTWPL 264

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N    +     +      A KAL+ F+  + R +          +    + + 
Sbjct: 265 FGAHNVANASAAMAAARHVGIAPRIAAKALADFNGVKRRLEWRGSPGGVSVY----DDFA 320

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++    + L+ +    EG R+  + +       +      L    +      V+  
Sbjct: 321 HHPTAI---ATTLAGMKARMEGGRLIAVIEPRSNTMRAGVHAEALGP--ATEAADRVFWF 375

Query: 408 ---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS--CGF-YRLI 461
              G +    +              +D L   +  ++  GD VVV  SN    GF  RL+
Sbjct: 376 EPPGLNWALERIVSEDPDRSSRIADIDALVGVVVDTVRPGDTVVV-MSNGGFSGFHDRLL 434

Query: 462 NLLLEE 467
             L   
Sbjct: 435 EALQNR 440


>gi|187930156|ref|YP_001900643.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12J]
 gi|229620425|sp|B2UCX6|MURC_RALPJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|187727046|gb|ACD28211.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12J]
          Length = 483

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 136/405 (33%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E  + L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGHFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPDR----RLVLSFQPHRFTRTRDCFEDFVKVLGTVDALLLAEVYAAGEP 402

Query: 411 VLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            +   D  AL R++ V       + E ++ +   I  +  DGDVV
Sbjct: 403 PIIAADGRALTRALRVANKIEPVFVEQIEDMPQAILDAAQDGDVV 447


>gi|300690342|ref|YP_003751337.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
 gi|299077402|emb|CBJ50027.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           PSI07]
          Length = 483

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 78/405 (19%), Positives = 134/405 (33%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFVKVLGTVDALLLAEVYAAGEP 402

Query: 411 VLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            +   D  AL R++ V       + E ++ +   I  +  D DVV
Sbjct: 403 SIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVV 447


>gi|297581030|ref|ZP_06942955.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
 gi|297534856|gb|EFH73692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           RC385]
          Length = 444

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 104 ELFAWH---VDTPVIAITGSNGKSTVTDLSGMLANAAGV----KAAVGGNIGVPALDL-I 155

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DVD  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 156 SPDVDLYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 212 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 257

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 258 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 318 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 368 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|260878003|ref|ZP_05890358.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
 gi|308089815|gb|EFO39510.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus AN-5034]
          Length = 452

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 112/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQALADVLERGC-------WTERQFSGEDGDWQAHKLVLDGSKFEVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEEQGITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + D   +         +D     I      GD ++V  SN  GF  +
Sbjct: 385 LFQPDNIEWSVQDIADQCKQ--PAFVDADIDNFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 461 INLLLEEFP 469
              LLE+  
Sbjct: 441 HGKLLEQLK 449


>gi|149175312|ref|ZP_01853934.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
 gi|148845921|gb|EDL60262.1| UDP-N-acetylmuramate--L-alanine ligase [Planctomyces maris DSM
           8797]
          Length = 486

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 141/426 (33%), Gaps = 55/426 (12%)

Query: 45  AIK--GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLG 93
           A++  G     GHD  F+      G  ++V +  +  +           IP F       
Sbjct: 67  ALRAGGYRVHQGHDMRFVPE----GTSVLVYSPAIGLANPERRFAQRMGIPQF------S 116

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
               L    R +     + I G+ GK+TT  +    L +   + + +      IG  L  
Sbjct: 117 YAQMLGHLMRQKQG---VCIAGTHGKSTTTALTAFILQNAGVSPSAV------IGAELCS 167

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
             +      G   +  S   E +     + P  A IT I P H   F   +++ +A AE 
Sbjct: 168 QNLNGWAGEGALFVAES--CEYQRSFLNLFPFYAAITNIEPDHFDYFKNQDDMTTAYAEF 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              + K GT+ L       + L+    A     I +F   + AD+     K  +      
Sbjct: 226 VARIPKGGTLVLPSTCMGLQKLREACKA----KISTFSLERGADWWATDIKSTAFGLRFR 281

Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                    E+     G H   N ++   +      D +   + +  F     R +R   
Sbjct: 282 LFHQGEYFSEISLQKTGKHNVSNAMVAAILCHTAGIDAEQIREGIYEFPGIRRRYERM-- 339

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHI 390
                    + + Y  +P ++    + L  +      RRI  L +  ++        ++ 
Sbjct: 340 --GSYKGLTLFDDYAHHPTAI---QATLKMLRQEYPDRRIWCLYEPHQVSRTQALMDYYA 394

Query: 391 DLAEVLSLYNISHVWLSGFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSL 441
              +      I+ V+ +   +           ++  L  +  V +S ++D +   +++  
Sbjct: 395 GSFQQADRILIAPVYAAREKLAEEPVETSKELVRRILLHNASVSFSSSLDQMLSTLETEA 454

Query: 442 VDGDVV 447
             GD++
Sbjct: 455 QSGDII 460


>gi|92116833|ref|YP_576562.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nitrobacter
           hamburgensis X14]
 gi|118595668|sp|Q1QNU5|MURD_NITHX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|91799727|gb|ABE62102.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nitrobacter
           hamburgensis X14]
          Length = 466

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 113/381 (29%), Gaps = 43/381 (11%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
             AR    A  +AITG+ GK+TT  ++   +               +IG  +     P  
Sbjct: 106 ERARHAPDAPFVAITGTNGKSTTTALVAHLMREAGHDVQMG----GNIGTAILSLEPPRK 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E+    +     LT  + P + ++  ++P HL     IE  A+ K  +   ++ 
Sbjct: 162 GRVHVIEMSSYQID----LTPSLDPTVGILLNVSPDHLDRHGTIEHYAAVKERLIAAVQP 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT  +  DD +      +    G + +    K   AD       +    S         
Sbjct: 218 HGTAVVGVDDIWSRTAADRIEQAGKRVVRVSVKRPLADGISVDHDRIVRASGGAQAEIAD 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +      ++       +   +++            S      G   R      +   
Sbjct: 278 IGGIGSLRGRHNAQNAACASAAALALGVGRDILQQDLRSFP----GLAHRMEQVGRKANV 333

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  + + A+S  ++I     G+  +  G +  + EL               
Sbjct: 334 LFVNDSKGTNADATEKALSSFAEIFWIAGGKPKS--GGIAPLAELFPR------------ 379

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KSS 452
            I   +L G         L   +    S T++                  VV++    +S
Sbjct: 380 -IRKAYLIGEAAEEFAGTLEGRVVYEISGTLEAAVPAAARDAEGSGLADAVVLLSPACAS 438

Query: 453 ---------NSCGFYRLINLL 464
                        F  L+  L
Sbjct: 439 FDQFRNFEARGDRFRELVRAL 459


>gi|167855430|ref|ZP_02478195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
 gi|167853424|gb|EDS24673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parasuis 29755]
          Length = 462

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 86/319 (26%), Gaps = 27/319 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DF + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSDFFVIEADEYDSAFFDKRSKFVHYNPKTLIINNIDFDHADIFDDLKAIQRQFHHLIRT 213

Query: 217 LEKTGTIFLNYDDSFFEL-LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           + + G I     D   +  LK   ++                           +     +
Sbjct: 214 MPQNGCILSATSDENVQNTLKMGCYSEQQFIGQDQDWYAEPLSSDYSHFAIYHKQQKAGE 273

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           ++   +   +   G             V      +++ I A      K            
Sbjct: 274 VKWNLLGAHNMHNGLMAIAAAHHAGVSVEQACLGLNSFINANRRLEVKGEVNGITVYDDF 333

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T I  + +A    +     +L+ + P     ++ V                ++A  
Sbjct: 334 AHHPTAILATIDALRGKVGKEQRILAVLEPRSNTMKMGV-------------HKEEIAPS 380

Query: 396 LSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           L       V++            + DAL +     +S ++D L   I       D ++V 
Sbjct: 381 LKDA--DAVFVYQPDTIPWQVSTITDALSQ--PAQWSTSLDELVELIVKEAKPTDHILV- 435

Query: 451 SSNSCGFYRLINLLLEEFP 469
            SN   F  +   LLE  P
Sbjct: 436 MSNG-AFGGIHQKLLERLP 453


>gi|224417702|ref|ZP_03655708.1| hypothetical protein HcanM9_00351 [Helicobacter canadensis MIT
           98-5491]
 gi|253827051|ref|ZP_04869936.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313141245|ref|ZP_07803438.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253510457|gb|EES89116.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313130276|gb|EFR47893.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 357

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
           + +++++   G  +      F N I  D   I   + F  +K P  D    I  A+  GA
Sbjct: 9   SVNEIVEVAFGTLLNQPSISFFNQICDDVEKIKKGDLFV-VKDPK-D----IQKAINLGA 62

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
             ++ +     ++    +    V+++  +L ++     
Sbjct: 63  FGILFS--GEIAMEDSEVAWISVENLEESLLRILRHYL 98


>gi|302344981|ref|YP_003813334.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
 gi|302150216|gb|ADK96478.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella melaninogenica
           ATCC 25845]
          Length = 458

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 104/352 (29%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    DF + E    
Sbjct: 115 LCFAGTHGKTTTSCMCAHLMHQSHLDCNAFLGGISKN--YGTNYILSDHSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++K G + +     
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIIRKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               ++          IY + + +               ++  V       ++       
Sbjct: 228 MKPNVQE------GVRIYEYSRDEGDFHAENIRIANGTITFDFVSPIENIKDIELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDNRHVFLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   + +        +          +   ++ F+ + AE L   +   V L+   
Sbjct: 342 QSAKSLKELYADKKVTAIFQPH--------LYTRTRDFYKEFAEAL--SHFDEVVLTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L  ++     +  D +  F++S   + DV+VV  
Sbjct: 392 PAREEPIPGVTSELIYDNLSPNVKKQMIK-KDDVLDFVKS--RNFDVLVVLG 440


>gi|218710689|ref|YP_002418310.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
 gi|218323708|emb|CAV20053.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelateligase [Vibrio splendidus LGP32]
          Length = 452

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 113/363 (31%), Gaps = 27/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          YA        +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYAPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G IF   +
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKE 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + ++      +   S G+  + D +    K   + S   V  QG+ +       
Sbjct: 223 DTAIQDVLSRGCWSETE---SSGEQGDWDAK----KLVKDGSQFGVYFQGECVG--TVDW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          ++ D+  + 
Sbjct: 274 DLVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGEVAGVSVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
             A       + +++        +       + G   ++    L +          +L  
Sbjct: 334 PTAIELTLGGLRNKVDTKKIIAVLEPRSATMKRGVHKETLADSLMQ------ADSTYLFQ 387

Query: 409 FH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                  V  + DA       H S+ MD     I S    GD ++V  SN  GF  +   
Sbjct: 388 PDNIDWSVQDVADAC--HQPAHVSDDMDAFVAKIVSEAQAGDQILV-MSNG-GFGGIHQK 443

Query: 464 LLE 466
           LL+
Sbjct: 444 LLD 446


>gi|56461361|ref|YP_156642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
 gi|56180371|gb|AAV83093.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Idiomarina loihiensis L2TR]
          Length = 433

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 119/364 (32%), Gaps = 31/364 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          +          G     AR+  D +F + E   
Sbjct: 93  VLAVAGTHGKTTTASMLA--WILEDNGFDPGFMIGGVPGNFPVSARLT-DSNFFVIEADE 149

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  +  I    A +   +  TG + L  
Sbjct: 150 YDTAFFDKRSKFVHYAPDTLILNNLEFDHADIFPDLAAIQRQFAHLLRVVPDTGQVILPA 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   + +  +     +  +   G  +    +    +         +     ++   H+ 
Sbjct: 210 GDKALDEVLGQGCWSPVVRMGEQGDWQTKLLKTDGTEFEVHYQSKCIAQVSWNVLGTHNV 269

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
               MA                V    +  +    +    KR    L +     + + + 
Sbjct: 270 NNAMMAIIAAA----------HVGIKAEQSAQALNRFRSPKRRMELLGEHRGVKVFDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P+++K  +S L Q  P  + R IAVL    +  +MG  S +    L       +  +V
Sbjct: 320 HHPSAIKTTVSGLRQHQP--DSRIIAVLEPRSNTMKMGVHSDTLVQSL------EDADNV 371

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFY-RLI 461
           ++     L       +    H  E+ D L   + + +  GD V++  SN    G + R +
Sbjct: 372 FVLQPEGLK-WQLAEKMPKAHVFESTDDLLAGLLAEVRAGDAVLI-MSNGSFDGLHQRFL 429

Query: 462 NLLL 465
             L 
Sbjct: 430 KALQ 433


>gi|254446684|ref|ZP_05060159.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
 gi|198256109|gb|EDY80418.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobiae
           bacterium DG1235]
          Length = 429

 Score = 49.9 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 102/381 (26%), Gaps = 69/381 (18%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A   R      I+ ITG+ GKTT  E +T A SS             +IG P++      
Sbjct: 100 ASLWR----GPIVVITGTNGKTTLTEFITSAFSSAGI----EAYACGNIGRPISSLVADD 151

Query: 159 DV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                  + E+        + L         + T     HL     +E     K  + + 
Sbjct: 152 CNLEAIAVCEVSSFQAEITKRLHADS----LLWTNFDEDHLDRHKSLESYFKCKYTLTQ- 206

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                                    L    ++ F +S     +   +    E        
Sbjct: 207 -------------------------LQRGDVFLFDESVKEFGERFNYAIPDEGLIDSSLD 241

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             +                 L+   +   +  D    I+A + F        R    +NQ
Sbjct: 242 ALELGVAGTVFETLPERNTYLIARALWLRMGLDEGELIEAANNFK---KSPHRMELIVNQ 298

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              +  D+S + N  ++          +       +  +G     G     F   +A  +
Sbjct: 299 DGISYWDDSKSTNFHAVYG--------ALKRFENPVVWIGGGKNKGGDLPRFVARVASSI 350

Query: 397 SLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS 452
           S  +     L G     L  A     + V   E ++       +    G  +++    +S
Sbjct: 351 SSAH-----LIGETSAELAAAFEEHGVPVRVYEDLEEAVAGANAMAESGSNILLSPGFAS 405

Query: 453 ---------NSCGFYRLINLL 464
                        F R I+ L
Sbjct: 406 LDMFEGYSQRGEAFRRAISHL 426


>gi|85058425|ref|YP_454127.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Sodalis
           glossinidius str. 'morsitans']
 gi|122063259|sp|Q2NVV3|MURD_SODGM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|84778945|dbj|BAE73722.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sodalis
           glossinidius str. 'morsitans']
          Length = 438

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 38/349 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A ++AITGS GK+T   M+    ++             +IG+P     +     
Sbjct: 99  FAREASAPVVAITGSNGKSTVTCMVGEMAAAAGWQV----GVGGNIGLPALTL-LDSPCQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      TH ++   A +  I+  H++ +  G+++  +AK +I+      
Sbjct: 154 LYVLELSSFQL----ETTHSLKAAAATVLNISEDHMNRYPLGLQQYRAAKLKIYHDAAVC 209

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          A+  + G +      +       L    +   +          +
Sbjct: 210 VVNAEDALTLPVRGHDARCISFGAERGDYCLRRHAGQTWLMARGEPLLEGAELRVGGRHN 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +    A  +     + ++                   G   R+     +    
Sbjct: 270 YTNALAALALSDALGIPSAASLAALRQFR---------------GLTHRFELVHERRGVR 314

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA++ L  +     G    +LG     G+   +    L   L    
Sbjct: 315 WINDSKATNVGSTEAALNGLEVV-----GTLHLLLG-----GDGKSADFTPLTPWLQGDR 364

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  ++  G     L    P +     +ET++     I S +  GD+V++
Sbjct: 365 V-QLYCFGQDGAQLASLCPEA--ATLTETLEQAMRIIGSRVRAGDLVLL 410


>gi|146291592|ref|YP_001182016.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           putrefaciens CN-32]
 gi|145563282|gb|ABP74217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           putrefaciens CN-32]
          Length = 439

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 130/416 (31%), Gaps = 62/416 (14%)

Query: 65  AGLVVVNTDMVASIGSLSIPV---FGV-DDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A  ++++  +      +   +     V  DV     ++A       K  +I ITGS GK+
Sbjct: 67  ASQIIISPGIALDTAEVRAALDMGIEVIGDVELFAREIADR-----KPCVIGITGSNGKS 121

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           T   ++   L           +   +IGVP     +  + +  + EL    L      TH
Sbjct: 122 TVTTLVGEMLREAGMAV----AVGGNIGVPALDL-LSENAEIFVLELSSFQL----ETTH 172

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            +    +    +   H+  +S ++    AK  ++           +      E +     
Sbjct: 173 SLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----- 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                   SFG +     +          S +               IG H   N+L  +
Sbjct: 228 -----NQNSFGLAPPEGDEWGICD-----SKIYHGRSEIMPITEVSLIGSHNHANLLAAM 277

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +V  +  D     K    F     R         +G  T +++S   N  +  AA+  L
Sbjct: 278 ALVYAVGVDKQVIAKVARTFTGLSHRC---EVVGIKGGVTYVNDSKATNVGATVAALDGL 334

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           S       G  I + G   +  + S      L E L    ++H+   G     +      
Sbjct: 335 SDHL----GDIILIAGGDGKGADFSP-----LVEPL--SKVTHLITLGRDGNKIAALKEG 383

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           +I V   ++M        +    GD+V++    +S             F  L+ LL
Sbjct: 384 AIKV---DSMAAAVAKAAALATSGDIVLLSPACASLDMYSNFMARGDDFRNLVELL 436


>gi|262190386|ref|ZP_06048646.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
 gi|262033726|gb|EEY52206.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae CT
           5369-93]
          Length = 440

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 64/353 (18%), Positives = 128/353 (36%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E       +           +    G++    F              Q   + ++  + 
Sbjct: 208 AETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSL-----------AQHQGREYLVARN 256

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +          +G H   N+L  L ++     +   A+ AL  +     R    +   + 
Sbjct: 257 EAFMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRC---QVVADN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|289209360|ref|YP_003461426.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944991|gb|ADC72690.1| UDP-N-acetylmuramate/alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 478

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 67/394 (17%), Positives = 128/394 (32%), Gaps = 32/394 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            LVV +    ++    +    G+  V  A   LA   R R     IA+ G+ GKTTT  +
Sbjct: 76  VLVVSSAIDPSNPEVQAARRRGIPIVRRA-EMLAELMRFRYG---IAVAGTHGKTTTTSL 131

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+        +     +     +        D+ + E   S    +      ++P 
Sbjct: 132 VASVLAEAGMDPTFVIGGRLNSTASHSNLGAG---DYLVAEADESDASFLH-----LQPM 183

Query: 186 IAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           I+++T I   HL  +      + +   E    L   G   L  DD     L  +     +
Sbjct: 184 ISIVTNIDADHLGTYGNDFGNLRATFLEFLHHLPFYGIAVLCADDPQVRDLYPELERPRL 243

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               ++G    AD +    +Q   + + +++L G++   V   +         +    V+
Sbjct: 244 ----TYGIEAQADVRALNVRQEGVRMFFDLKLPGQAAFPVTLNLPGRHNVLNALAAAAVA 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                   AI+A        GR  + +          + + Y  +P  ++A  +      
Sbjct: 300 HELEVAPEAIQAALERFQGIGRRFQVQELETAQGPLTLVDDYGHHPREIEATQAAARDAW 359

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLALK 415
           P      +            ++    D AE LS  ++     V+ +G          +L 
Sbjct: 360 PDRRRITVF----QPHRYTRTRDLFEDFAEALSETDVLILLEVYPAGEEPIPSADGRSLA 415

Query: 416 DALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
            A+     V   + E    +   +   L   DVV
Sbjct: 416 RAIRLRGQVEPVFVEHAADVAEVLSGMLKPNDVV 449


>gi|197334972|ref|YP_002156999.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
 gi|226722954|sp|B5FB37|MURD_VIBFM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|197316462|gb|ACH65909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio fischeri
           MJ11]
          Length = 440

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 126/369 (34%), Gaps = 52/369 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +         +   +IG       +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTDLTGEMAKAAGV----KTAVGGNIGFAALDL-LEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IF+  E        
Sbjct: 162 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFDHAEVC------ 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +        +    KS   D       +     ++              
Sbjct: 212 --------IVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDAMSLLAANELG 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ + ++  +  ++D  +  L  ++    R    +   +      +++S 
Sbjct: 264 LVGKHNIANSLVAIALLDAVGINLDATLDTLRTYNGLTHRC---QVVADNNGIRWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  ++ 
Sbjct: 321 ATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MMYC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G          PRS+     ETMD     +  +L  GD+V++    +S           
Sbjct: 370 FGEDGDQFVSLDPRSL---LCETMDEAVATLYPTLNKGDMVMLSPACASFDQYANFMARG 426

Query: 455 CGFYRLINL 463
             F +L   
Sbjct: 427 DAFTQLAKQ 435


>gi|296133658|ref|YP_003640905.1| UDP-N-acetylmuramate/alanine ligase [Thermincola sp. JR]
 gi|296032236|gb|ADG83004.1| UDP-N-acetylmuramate/alanine ligase [Thermincola potens JR]
          Length = 459

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 133/392 (33%), Gaps = 46/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + + +A      + +    DVL  L           +   IA+ G+ GKTTT  M+ + L
Sbjct: 78  DNEELAEARKKGLKILHRGDVLAGLMA---------EKKGIAVAGAHGKTTTTSMIALVL 128

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                    +        V   L  +  +   G  E  ++   E       + P+I VIT
Sbjct: 129 EKNGLDPTVV--------VGGELFDIGSNAKLGKGEYLVAEADESDGSFLKLSPYIEVIT 180

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  +   E+I +A  E  E +   G   L ++    ++L  K          S+
Sbjct: 181 NIEDDHLDYYGSTEKIDAAFQEFTEKIPDEGFCILCFNSPKVKVLADKLKKP----FISY 236

Query: 251 GKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G    A+++ R    Q ++ S           ++  +  G H   N L  L +  ++   
Sbjct: 237 GIGVPAEYEGRNILCQGTQSSVDVFYRNEYLGKLRLNVPGEHNLANALAALAVGRLVGLS 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +    AL+ F     R +             + + Y  +P  +KA +           G
Sbjct: 297 FEQVADALASFTGVGRRFQLIGQVKG----ITVVDDYAHHPTELKATLQA-----ARKAG 347

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKDAL 418
               +          ++  +    E  + +    + ++           G     + D +
Sbjct: 348 FARIISVFQPHRFTRTKFLYKQFGE--AFHGPDIIIITEIYSAGEKPIAGVSAQLIIDEV 405

Query: 419 PRSI--HVHYSETMDGLFLFIQSSLVDGDVVV 448
            +     V++ +T + +  F+ ++   GD+V+
Sbjct: 406 KKHTTAPVYFLKTEEDILEFLLANTRSGDLVL 437


>gi|322411195|gb|EFY02103.1| UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase
           [Streptococcus dysgalactiae subsp. dysgalactiae ATCC
           27957]
          Length = 394

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/382 (11%), Positives = 99/382 (25%), Gaps = 32/382 (8%)

Query: 88  VDDVLGALNKLAVAARL--RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           V D+  A++ +A+A     + +  ++  TG+ GKTT        L    K          
Sbjct: 2   VTDIKKAMSLIAMAFYDNPQDQLKLLGFTGTKGKTTAAYFAYHILKESYKPALLSTMNTT 61

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
             G     +++       +F +    +        +     A +          +    +
Sbjct: 62  LDGKTFFKSQLTTPESLDLFAMMAECVKNGMTHLIMEVSSQAYLVG------RVYGLTFD 115

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
           +        + +                LL   S A+ I +              ++   
Sbjct: 116 VGVFLNISPDHIGPIEHPTFEDYFYHKRLLMENSRAVVINSGMDHFLFLADQVAEQEHAF 175

Query: 266 CSEQSWMEVQLQGKSMEVV------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               S  ++                H+ I      N    +           +       
Sbjct: 176 YGALSDNQITTSQAFSFEANGQLAGHYDIQLIGHFNQENAMAAGLACFRLGASLADIQKG 235

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                  G+     +       +D ++N +         +LS +  H  G  + +LG   
Sbjct: 236 IAKTRVPGRMEVLTMTNHAKVFVDYAHNGDSLE-----KLLSVVEEHQTGNLVLILGAPG 290

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPRSI--HVHYSETMDG 432
             GE  ++   D   V++ +    V L+           +   +   I   +      + 
Sbjct: 291 NKGESRRA---DFGTVINQHPNLTVILTADDPNFEDPEDISQEIASHITRPIDIVSDREQ 347

Query: 433 LFLFIQSSLV-DGDVVVV--KS 451
                 S      D V++  K 
Sbjct: 348 AIQKAMSLCQGPEDAVIIAGKG 369


>gi|229524389|ref|ZP_04413794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
 gi|229337970|gb|EEO02987.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           bv. albensis VL426]
          Length = 467

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 127 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 178

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 179 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 235 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 280

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 281 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAEVNFRLALDALKSYTGLTHRCQVVADN 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 341 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 390

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 391 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|87123641|ref|ZP_01079491.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
 gi|86168210|gb|EAQ69467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           RS9917]
          Length = 466

 Score = 49.9 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 57/401 (14%), Positives = 113/401 (28%), Gaps = 55/401 (13%)

Query: 67  LVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV+         + ++    + V           ++A+A +  ++   I ITG+ GKT
Sbjct: 72  AVVVSPGIDWNHPTLEALRQQGVAVI---------GEMALAWQFLNRTPWIGITGTNGKT 122

Query: 121 TTKEMLTI-------ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           T  ++L                           +         P   D+ + E+    + 
Sbjct: 123 TVTQLLQHVLSSGGLHAPMAGNVGHSATELALSLSAVAPNDGDPATPDWLVMEMSSYQIE 182

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                  +V P I + TT+ P HL     +E   + K  + E  +       + D     
Sbjct: 183 AAA----IVAPRIGIWTTLTPDHLERHGTLEAYRAIKRGLLERSQIRIFNADDSD----- 233

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              ++  A     ++                  +E      +             G H  
Sbjct: 234 --LSRQRASWDHGLWISAAGAGDGATAADLWCDAEGVVHCRRRGPLFPASALAMPGDHNR 291

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           QNML+          + +    AL  F     R              + ++S   N  + 
Sbjct: 292 QNMLLVTAAALEAGLEPEVIAAALRTFPGVPHR---LERLGELKGMQVFNDSKATNFDAA 348

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
             A+  +           + + G   + GE  +        ++   +   V L G     
Sbjct: 349 VVALRSV-------PRPAVVLAGGQTKQGEAGEWL-----TLMGERSC-AVVLYGSGAEE 395

Query: 414 LKDALPRS---IHVHYSETMDGLFLFIQSS---LVDGDVVV 448
           L + L  S     +   + +D            L  G +++
Sbjct: 396 LANLLSSSGYPGQIRRCDDLDAAVPIALDLGRQLRAGTLLL 436


>gi|317504112|ref|ZP_07962114.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
 gi|315664784|gb|EFV04449.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella salivae DSM
           15606]
          Length = 458

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +  + D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHMDCNAFLGGISKN--YGTNYILSKNSDYIVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +             I       
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT------ELIQPGGALI 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ K H      +Y + +               E  +  +        V       
Sbjct: 222 IHRNLEMKQHVQEGVKVYDYSREAGDFHAENVVIDNGEICFDFISPIENVARVNLGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENAIAAMAMAQLNGCTAEELRYGMRTYAGVDRRFDFKIKDNRHVFLSDYGHHPKEVL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S ++   +        +GR+I V+     +   ++ F+++ A+ L   N   V L+   
Sbjct: 342 QSARSLKELF-------KGRKITVMFQPH-LYSRTRDFYLEFADAL--SNFDEVILTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G   + + D L  ++     +  D +  +++    D DV+VV  
Sbjct: 392 PAREEPIEGVTSMLIYDHLKPNVEKTMIK-KDEVLDYVKG--RDFDVLVVLG 440


>gi|227504694|ref|ZP_03934743.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
 gi|227198704|gb|EEI78752.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium striatum
           ATCC 6940]
          Length = 484

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/423 (16%), Positives = 132/423 (31%), Gaps = 46/423 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +A   +  IPV    D    L +L            I + G+ GKT+T  M   A+
Sbjct: 84  DNPELAGARAAGIPVIRRSD---LLAELMEGH------QQILLAGTHGKTSTTSMTVTAM 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVI 189
                  +          +               + E   S    +R+      P +AVI
Sbjct: 135 QQAGLDPSFAIGGQ----LNRAGTNAHAGTGAAFVAEADESDASLLRYS-----PTVAVI 185

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--LKAKSHALGIKTI 247
           T + P HL  F   E       +  + +E++G + +  +D       L+A    + +   
Sbjct: 186 TNVEPDHLDFFHNAEAYYKVFDDFADRIEESGYLVVCLEDDHAAQTGLRALERGIQVLGY 245

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQL----------QGKSMEVVHHGIGYHMAQNML 297
            S    +         +   E+  +              Q + +       G+HM  N L
Sbjct: 246 GSAEAGEKYPSIPLAAEVLEEKVSVIGMQVRVRVALPGAQSQELSYELQIPGHHMVLNSL 305

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +   ++    + L+ F     R +             + + Y  +P  + A +
Sbjct: 306 AALVSGGLAGGELSELAEGLTDFTGVRRRFEF----RGTESQVRVFDDYAHHPTEVTAVL 361

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------G 408
           +   Q           +      +   +  F  + A+ L+L + + V            G
Sbjct: 362 TAARQKVEAEGKGARVIACFQPHLYSRTMEFDKEFAQALALADAAVVLDIYGAREQPVEG 421

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
                + D +P  + V +          + S +  GDVV+   + S     L   +L+E 
Sbjct: 422 ITSRIITDKMPEDMKVIFEPNFSEAAQDVVSLVQPGDVVLTIGAGSVTM--LAAEILDEL 479

Query: 469 PAI 471
            A+
Sbjct: 480 KAL 482


>gi|225166182|ref|ZP_03727899.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
 gi|224799576|gb|EEG18088.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Opitutaceae
           bacterium TAV2]
          Length = 437

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 114/370 (30%), Gaps = 55/370 (14%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AITG+ GKTT  E LT AL  I +     G+  + +   +            + E+  
Sbjct: 100 LVAITGTNGKTTLTEFLTHALRHIGRDVTATGNIGSPLSHLVAERGGGGPESIAVCEISS 159

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                     + +R   A+ T  A  HL     IEE   AK  +FE              
Sbjct: 160 FQ----AETLNHLRADSAIWTNFAEDHLERHPTIEEYFHAKWRLFERCIGGHVYAGTSVQ 215

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV--HHG 287
            + + L               G++   D ++    Q  +                     
Sbjct: 216 IWADRL---------------GQTLPTDARIPTEDQPGDILLRGTPFADYPQRENFLLAA 260

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             +H        L   +      D  ++ ++                  G  T  ++S  
Sbjct: 261 AWWHGQGLREGALYAAARTFTLADHRLQKIATTPGNAEPQL--------GSVTWWNDSKA 312

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  +++AA++  +          I +LG   + G++  +F   +        + H  L 
Sbjct: 313 TNFHAVEAALNAFTA-------PVIVILGGKPKGGDI-PAFVRRITP-----KVRHALLI 359

Query: 408 GFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVK---SS---------NS 454
           G     L  A   +   H +S T+D       +    G+ V++    +S           
Sbjct: 360 GETGPVLAAAARDAGLAHTHSVTLDQAVTDAAALARPGEHVLLSPGFASFDQFRGYADRG 419

Query: 455 CGFYRLINLL 464
             F + +N L
Sbjct: 420 LRFVQFVNKL 429


>gi|153214090|ref|ZP_01949224.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|153826875|ref|ZP_01979542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
 gi|124115516|gb|EAY34336.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           1587]
 gi|149739291|gb|EDM53547.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-2]
          Length = 440

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPSLDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 208 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 253

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 254 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|310643587|ref|YP_003948345.1| udp-n-acetylmuramate--l-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309248537|gb|ADO58104.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 460

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/396 (14%), Positives = 119/396 (30%), Gaps = 31/396 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA +VV +T +                 L     LA   RL ++   IA+ G+ GKTTT
Sbjct: 63  AGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLA---RLLNERKGIAVAGAHGKTTT 119

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+ + +         I               +  +   G  E  ++   E        
Sbjct: 120 SSMIALVMERCNVDPTYIIGGEI--------TNLGTNAKAGKSEFVVAEADESDGSFLQY 171

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   ++T I   HL N+ G      +    F    +     +   D        +    
Sbjct: 172 HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLSQIRPDGAAIVCADDQN---IREMLPQ 228

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + ++G    AD+     +    + S+   +       +     G H   N + T+ 
Sbjct: 229 LQTRVITYGVEHEADYMATDIQLGDRRLSFTMSRKGTALGTIELSVPGKHNMYNAMATVI 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                    D     +  FH  + R +            + D +++        + +  +
Sbjct: 289 SCLEAGIPFDQIAATIVEFHGAKRRFQVL--GEGNDILIIDDYAHHPTEIEATISAARAT 346

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-------LSGFHVLAL 414
                   +          +   S++F        +   I+ ++       ++G H   L
Sbjct: 347 GKRIIAVFQPQRYSRTFFLLDAFSRAF-----SEANEVIITDIYSPAGEKQIAGVHSSKL 401

Query: 415 KDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            D +    + +  Y  T + +   ++  L  GD+V+
Sbjct: 402 VDLIVQNSNANAIYLPTKEAVIEELKDRLQPGDLVL 437


>gi|269964685|ref|ZP_06178923.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
 gi|269830584|gb|EEZ84805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio alginolyticus 40B]
          Length = 452

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 112/371 (30%), Gaps = 37/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    D   +  K   + S  +V LQ +  +V     
Sbjct: 223 DQALADVFERGC-------WTEKQFSGVDGDWQAHKLVLDGSKFDVALQDE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 NLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGEEQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   ++V    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--- 457
           L         V  + D    +        +D     I      GD ++V  SN  GF   
Sbjct: 385 LFQPDNIEWSVQDIAD--QCTQPAFVDADIDNFVAKIVERARPGDQILV-MSNG-GFGGI 440

Query: 458 -YRLINLLLEE 467
             +L+  L ++
Sbjct: 441 HGKLLEQLKQK 451


>gi|114704924|ref|ZP_01437832.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
 gi|114539709|gb|EAU42829.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Fulvimarina
           pelagi HTCC2506]
          Length = 463

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 118/403 (29%), Gaps = 50/403 (12%)

Query: 79  GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA 138
            +  +P+ G  DV     + A       +A  +AITG+ GK+TT  ++   L    +   
Sbjct: 89  NAAGVPIIG--DVEIFGRERAS---KAPEARFVAITGTNGKSTTTALIAHCLKEAGRD-- 141

Query: 139 CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
                  +IGVP+   + P      + E     +     L   ++P +A++  +   HL 
Sbjct: 142 --TQLGGNIGVPVLTLQEPTPERHYVVECSSYQID----LAPGLKPSVALLLNLTADHLD 195

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               IE  AS K  +  G ++      +            +    ++       +    +
Sbjct: 196 RHGTIEHYASVKERLVVGADRAVIGADDIWCRAIADRIEAAGRPVVRISGQGAVAGGVGY 255

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                 +  +              +     G H  QN    +  +++        +K L 
Sbjct: 256 ADGIVVRALDGFSEASFDLTGIGSLR----GRHNGQNAAAAVAALTLCDVGEAQILKGLR 311

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     R          G    I++S   N  +   A++   +I     G      G +
Sbjct: 312 SFPGLAHRM---EEVGRIGKTLFINDSKATNADAAATALASFERIYWIAGGLPKE--GGI 366

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            E+                   I   +L G    A    L   +    S T+D       
Sbjct: 367 AELSRFFP-------------KIVKAYLIGEAAPAFAATLGEDVAYEISATLDNAVASAA 413

Query: 439 SSLVDGD---VVVV---KSS---------NSCGFYRLINLLLE 466
               + +    V++    +S             F   +  L +
Sbjct: 414 RDSAEDEKSAAVLLSPACASFDQYRNFEVRGDAFRDSVRSLKD 456


>gi|5834372|gb|AAD53938.1|AF179611_22 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Zymomonas
           mobilis subsp. mobilis ZM4]
          Length = 269

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/182 (23%), Positives = 65/182 (35%), Gaps = 17/182 (9%)

Query: 64  GAGLVVVN-------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G    VV+         + A      IP+ G  D+           R   +  ++ ITG+
Sbjct: 73  GISAFVVSPGIPINRHPIAALAKERGIPIIG--DIELFAQAHGFWERHGRRCPVVGITGT 130

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   L               +IG+PL  A    D    + EL    +    
Sbjct: 131 NGKSTTTALIHHILKEA----GLPTLMGGNIGLPLLAADPLPDGGVYVLELSSYQID--- 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            LT  +   IAV+T I P HL    G E    AK  +F          +  DD   +++ 
Sbjct: 184 -LTFTLDCDIAVLTNITPDHLDRHGGFEGYRKAKERLFLLQSSPHYAVIATDDIPSQVIA 242

Query: 237 AK 238
            +
Sbjct: 243 KQ 244


>gi|118474938|ref|YP_891972.1| hypothetical protein CFF8240_0797 [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414164|gb|ABK82584.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
           82-40]
          Length = 326

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + + G          V+G  +++  +    AF A+     D       A+Q G
Sbjct: 1   MRIENLTRLVDGELQNNPKISMVSGFCLEADDVKNGFAFIALNATRDDAIL----AIQNG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++ +  +   I    I +  VD++  ++ +LA     + +     +
Sbjct: 57  AYALITD--LNLEIYDDEIAIIKVDNLASSVLRLARFIATQKELKFFHL 103


>gi|260891629|ref|ZP_05902892.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
 gi|260858639|gb|EEX73139.1| UDP-N-acetylmuramate--alanine ligase [Leptotrichia hofstadii F0254]
          Length = 453

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 118/390 (30%), Gaps = 35/390 (8%)

Query: 56  FILHA----VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA-LNKLAVAARLRSKATI 110
           +I         KG  L V +T +  +           +++      +L      R     
Sbjct: 54  YIGQVEENVKDKGIDLFVYSTAIKETNPE--YKYIVDNNIKKIKRGELLAEIMNRFDG-- 109

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+++AL   +              V   +  +  +   G  E  ++
Sbjct: 110 IAVAGTHGKTTTSSMMSVALLEKEPFIV----------VGGIIPEIRSNSQIGNSEYFIA 159

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       ++P  +V+T I   HL +    E I  +  +  +  EK   +  +  + 
Sbjct: 160 EADESDNSFLYIKPKYSVVTNIEADHLDHHGTFENIKKSFEQFIDSTEKIAVLCKDTVEK 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIG 289
               +K K+       ++   K + AD   +  +  +  +  EV  +G+          G
Sbjct: 220 VGLNIKNKN------VVWYSIKDETADIYAKNIRVENGITSFEVVKKGEDLGTFSLSIPG 273

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE----S 345
            H   N L  +        ++    + +  F     R +       +             
Sbjct: 274 EHNVSNSLPVIYFAHEFKCNMKKVKERILKFKGANRRYQVIYDNNLRLIDDYAHHPTEVK 333

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N A       V     PH   R      D     + +    +      S  N     
Sbjct: 334 VTINAAHNTEKGKVTVIFQPHRYSRTKFFFDDFVNSLKDADDLILLPIYAASEDN----- 388

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFL 435
             G     L + +  ++ V   E ++ +  
Sbjct: 389 TYGVSSELLAEKIGGNVRVQTQEEIEEIIK 418


>gi|113869228|ref|YP_727717.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha H16]
 gi|113528004|emb|CAJ94349.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ralstonia eutropha
           H16]
          Length = 503

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 84/314 (26%), Gaps = 46/314 (14%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L      TH + P  A +  +   HL     +E  A++KA IF      
Sbjct: 176 EVWVLELSSFQL----ETTHTLAPAAATVLNVTQDHLDWHGSMEAYAASKARIFGPAGSE 231

Query: 221 GTIFLNYDDSFFELLK-----------AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
               LN +D     +                  G   I   G                E 
Sbjct: 232 CVQVLNRNDRLTMDMARPGSTPLTFGTDLPETPGSFGILREGGMPWLVLAEPDPDAEGEG 291

Query: 270 SWMEV------------QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                            + +        H  G H A N +  L +   +   ++  +  L
Sbjct: 292 KPRRRKAAEVAREAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDLPMNALLHGL 351

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             +        R             D+S   N  +          ++      +  VL  
Sbjct: 352 REYRG---EPHRVEWVATIDDVEYFDDSKGTNVGAT---------VAALSGLDKRVVLIA 399

Query: 378 MCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFL 435
             E  G+        +A+         V L G     L+DAL  S      + T++    
Sbjct: 400 GGEGKGQDFSPLAAPVAQYARA-----VVLIGRAAGELRDALQGSGASLVDAGTLEEAVT 454

Query: 436 FIQSSLVDGDVVVV 449
                   GDVV++
Sbjct: 455 KAAGLAESGDVVLL 468


>gi|329922717|ref|ZP_08278269.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
 gi|328942059|gb|EGG38342.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Paenibacillus
           sp. HGF5]
          Length = 356

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 90/302 (29%), Gaps = 22/302 (7%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + D+ + EL    L          RP IA +  +   HL    G+++  ++KA++F    
Sbjct: 39  ENDWMVVELSSFQLKGTE----AFRPRIACLLNVTETHLDYHGGMDDYVASKAKLFANQT 94

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQL 276
              T  LN+DD     L     A  +    S    +            Q S++     ++
Sbjct: 95  SEDTAVLNWDDPVCRNLVPYIKAHIVPFSMSESLREGVHITPPYAPGAQDSDEDDQGRRI 154

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                E   H I       +     + + + A        ++     E     +R   ++
Sbjct: 155 IYTDGEGFTHEIIRVENIGLPGRFNVGNAMAACAIAIAAGVAPDK-LEEALSSFRGVEHR 213

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
             F    +  +    S               +   + + G     G    S + +L   +
Sbjct: 214 LEFVAELQGVSYYNNSKATNSKATHMALTSFKEPVVLIAG-----GLDRGSDYEELIPSM 268

Query: 397 SLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGL-------FLFIQSSLVDGDVV 447
               +  V L G     + +A  ++    +   +  +                   GD+V
Sbjct: 269 QGR-VKAVVLLGETREKIANAAAKAGLKDIILVDNGEDAASTLTSAVRKAAGLAESGDIV 327

Query: 448 VV 449
           ++
Sbjct: 328 LL 329


>gi|288800560|ref|ZP_06406018.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332773|gb|EFC71253.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 443

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/381 (17%), Positives = 124/381 (32%), Gaps = 41/381 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              MV  I   +IP+        +  + A      + + +I ITGS GKTTT  ++    
Sbjct: 75  EVPMVKEIAKRNIPII-------SEIEFAGRY---TNSKMICITGSNGKTTTTSLIYHIF 124

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      S   +IG  L L        + I E+    L       +  R + AV+ 
Sbjct: 125 KEAGYDV----SLAGNIGKSLALQVAEAPHAYYIIEISSFQLD----DMYDFRANTAVLL 176

Query: 191 TIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I P HL  +    ++ +  K  I +   K  +     DD        K +    +  +S
Sbjct: 177 NITPDHLDRYEYKMQLYTDAKMRIIQNQTKDDSFVYWADDDVVAAELHKYNIEAQQLTFS 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
              S +    +   +   ++      ++          +G H   N L      +    D
Sbjct: 237 ENASNSVAACVDNGEIVVKK-----PVEFTMSRAELSLLGRHNLYNSLAAALAAAANGVD 291

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           V+   + L  F   E R               I++S   N  + + A+  ++        
Sbjct: 292 VEAIKQGLRTFAGVEHRL---EYVTTANGVRYINDSKATNVDACRWALESMTT------- 341

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSE 428
             I +LG     G    + + ++ + L L     +   G     L +      + +  + 
Sbjct: 342 PTILILG-----GLDKGNDYNEI-KQLVLDKCKALVFMGADNSVLHEFFDGLGLEIADTH 395

Query: 429 TMDGLFLFIQSSLVDGDVVVV 449
           +M       +   V+GD +++
Sbjct: 396 SMKECMQECKKRAVEGDTILL 416


>gi|284048640|ref|YP_003398979.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952861|gb|ADB47664.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Acidaminococcus
           fermentans DSM 20731]
          Length = 473

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 82/302 (27%), Gaps = 35/302 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A I  I P H      +    +AK++IF        + LN DD     L  K+ +  
Sbjct: 192 PDVACIVNITPDHFERHGDMAGYVAAKSKIFAFQTPDQILILNADDPVSSKLGDKARSRV 251

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I          + +  L +     +  +       K        +    A N    L   
Sbjct: 252 IW--------FSTEKVLPEGGFIEDGWFTLALDGKKERICQVSDLQIFGAHNEQDVLAAC 303

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                   TA     V     G   R             ++S   N  S   A+      
Sbjct: 304 LSAHFAGVTAENMARVLKAFRGVEHRLEYVTAINGVKYYNDSKATNTDSAIKALEAFK-- 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
               +G  I + G     G    +   DL E         + L G       +A  +   
Sbjct: 362 ----DGHVILLAG-----GHDKMTGLDDLME-AVKAKTDALILLGEARQRFCEAAKKHGV 411

Query: 423 --HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEEF 468
              +    T +       S      VV++    SS             F +++  L +E 
Sbjct: 412 QNIIMIDGTFEDAVRKAYSLAKAPQVVLLSPACSSYDMFANFPERGRVFKQIVMDLAKEA 471

Query: 469 PA 470
            A
Sbjct: 472 KA 473


>gi|217979592|ref|YP_002363739.1| UDP-N-acetylmuramate--L-alanine ligase [Methylocella silvestris
           BL2]
 gi|254766012|sp|B8ETM5|MURC_METSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217504968|gb|ACK52377.1| UDP-N-acetylmuramate/alanine ligase [Methylocella silvestris BL2]
          Length = 468

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 127/402 (31%), Gaps = 35/402 (8%)

Query: 65  AGLVVVNTDMVASIGSLS-IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV+T +  +   L+      +  V  A   LA   RL+     +AI G+ GKTTT 
Sbjct: 67  AEVVVVSTAIKRNNPELAYARELRLPVVRRA-EMLAELMRLKQ---CVAIAGTHGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++   L +       I     +              D+ + E   S           + 
Sbjct: 123 SLVATLLEAGGFDPTVINGGIIN---AYGTNSRLGAGDWMVVEADES-----DGTFLKLP 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +A+IT I P HL +F   E I  A     E +   G   +  D    + L  +     
Sbjct: 175 ADVAIITNIDPEHLDHFGTFENIRKAFRSFVENIPFYGFAVMCLDHPTVQELVGQIEDR- 233

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQNM 296
              + ++G++ +AD +L         S   V ++ +         +++    G H A N 
Sbjct: 234 --RVITYGENPHADVRLVDIDLAGGMSRFSVVVRDRKSGGETVIEKILMPMPGLHNALNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPA 351
              + +   L    D    AL+ F   + R  R         F          +     A
Sbjct: 292 TAAIAVAHQLGMSPDQIRGALAGFGGVKRRFTRTGEWNGAIVFDDYAHHPVEIAAVLKAA 351

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
                  V++ + PH   R  ++  +       + +  +          I      G   
Sbjct: 352 RASTKGRVIAIVQPHRYTRLHSLFNEFAACFNDADAVIVADVYPAGEAPIE-----GADR 406

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             L  A+    H           L   ++     GD +V+  
Sbjct: 407 DGLVAAIKARGHRLAMPLARPADLSRLVRQLARPGDYIVLLG 448


>gi|153803325|ref|ZP_01957911.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|254226621|ref|ZP_04920201.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|254291799|ref|ZP_04962584.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|124121143|gb|EAY39886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MZO-3]
 gi|125620840|gb|EAZ49194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V51]
 gi|150422311|gb|EDN14273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           AM-19226]
 gi|327484899|gb|AEA79306.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           LMA3894-4]
          Length = 440

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 208 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 253

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 254 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|330815444|ref|YP_004359149.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367837|gb|AEA59193.1| UDP-N-acetylmuramate-alanine ligase [Burkholderia gladioli BSR3]
          Length = 465

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 85/418 (20%), Positives = 141/418 (33%), Gaps = 42/418 (10%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAA 102
            AI      GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   
Sbjct: 53  VAI------GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARRLRVPIVPRAV-MLAELM 102

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL+     IAI G+ GKTTT  ++   L++       +        +           DF
Sbjct: 103 RLKQG---IAIAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRL---ISAGANARLGSGDF 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTG 221
            + E   S    +        P I VIT I   H+  +            E  + L   G
Sbjct: 157 IVAEADESDASFLNLY-----PVIEVITNIDEDHMDTYGHDFARLKQAFIEFTQRLPFYG 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +  +  DD     +        ++   S      A+    +  +     +  ++     +
Sbjct: 212 SAVVCVDDPNVRQIIPFISKPVVRYGLSPDAEVRAEQVDARDGRMH---FTVIRDGLAPL 268

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFT 340
            VV +  G H  QN L  + I + L        +AL+ F+    R +RY   A   G   
Sbjct: 269 RVVLNLPGLHNVQNALAAIAIATDLGVADAAIQQALADFNGVGRRFQRYGELAAADGGSY 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID---LAEVLS 397
            + + Y  +P  M A I+      P        VL         ++    D   +   + 
Sbjct: 329 TLIDDYGHHPVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVNVLSTVD 384

Query: 398 LYNISHVWLSGFHV------LALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
              ++ V+ +G          AL  AL     V   +   +D +   +   +  GDVV
Sbjct: 385 ALVLTEVYAAGEAAIPTASGEALSRALREIGRVDPSFVAGVDEVPAALARVVRAGDVV 442


>gi|289551034|ref|YP_003471938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180566|gb|ADC87811.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 449

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 33/291 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ I EL    L  I       RPHIA+IT I  AHL     +E   +AK +I++    
Sbjct: 160 DEYLITELSSFQLLGIDKY----RPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTA 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  NY       L            +S  +  +  +    +        + +     
Sbjct: 216 DDYLICNYHQ---RHLIESEQLKAKTLYFSTQQEVDGIYIKDNFIIYKGVRIINIDDLVL 272

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E     I   +  ++L  + + +I+ +    +           G   R +        
Sbjct: 273 PGEHNLENILAAVLASLLAGVPVKAIIDSLTTFS-----------GIEHRLQYIGTNRTN 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A++  +Q      G            G    +   +L   +   
Sbjct: 322 KYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGNDFDELIPYMK-- 367

Query: 400 NISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G            +  +V  +  +      +Q  +   DVV++
Sbjct: 368 HVRVMVVFGETQEKFVKLGTSQGKYVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|221638512|ref|YP_002524774.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides KD131]
 gi|254766055|sp|B9KNJ5|MURD_RHOSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|221159293|gb|ACM00273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           sphaeroides KD131]
          Length = 465

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 117/395 (29%), Gaps = 35/395 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAIT 114
             ++V +  +  +     PV            +D+       A            ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARAMAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +          +IG  +       D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGR----PTQMAGNIGRGVLDLDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F        +    +     L
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLYL 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A     +      +  +                 + +  +   +    G   A 
Sbjct: 239 AGQLSVAPEDDRVIRISSGQKLERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLPGAH 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +          +  +      G   R +    +G    +++S   N  S  
Sbjct: 299 NHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGGVRFVNDSKATNVDSAA 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+    +I     G     LG   + G ++   H  L  V+        +L G      
Sbjct: 359 KALQAFPKIRWIAGG-----LG--KDGGIVALQPH--LGSVVKA------YLIGHSARDF 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + H    ETM+            G+VV++
Sbjct: 404 ALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|206578645|ref|YP_002240437.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288937137|ref|YP_003441196.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|290512560|ref|ZP_06551926.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
 gi|226706325|sp|B5Y1U6|MURC_KLEP3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|206567703|gb|ACI09479.1| UDP-N-acetylmuramate--alanine ligase [Klebsiella pneumoniae 342]
 gi|288891846|gb|ADC60164.1| UDP-N-acetylmuramate/alanine ligase [Klebsiella variicola At-22]
 gi|289774901|gb|EFD82903.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 491

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 122/400 (30%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q  ++  +  V+   + ++V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYRQLGAQGHFRLVRQDKEILQVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHP---------------KEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D    ++AL  F                   G+        + G      ++      + 
Sbjct: 310 DDQAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     V              + S L   D+V+V+ 
Sbjct: 425 LCRTIRGRGKVDPILVSDPAQAAEMLASVLTGNDLVLVQG 464


>gi|254468824|ref|ZP_05082230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
 gi|207087634|gb|EDZ64917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [beta proteobacterium KB13]
          Length = 451

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 93/368 (25%), Gaps = 25/368 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               +IA++G+ GKTTT  M+   L                     + +    D  F + 
Sbjct: 101 HDKWVIAVSGTHGKTTTTSMINWILRENDIDCGY-LIGGITGNFSSSSSLSQSDSPFFVI 159

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP   VI  I   H   F  I  I      +          
Sbjct: 160 EADEYDTAFFDKRSKFIHYRPKTLVINNIEFDHADIFDDISHIKRHFHHLIR-------- 211

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                      +         K     G     +          EQ   E     K  ++
Sbjct: 212 ----TVPQQGKIIINQQDKNTKETVDMGIWSEIEEFNSSESWHIEQINKEKLFFYKEKKI 267

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      N L  +  +        +   AL      +   +R      +   T+ D
Sbjct: 268 GKLNWDLIGEHNELNAMAAILAARHVGVSEENALKSLSSFKNTKRRLEVIYKKNNLTIYD 327

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + +  +P ++           P  +      + D             +L  +L       
Sbjct: 328 D-FAHHPTAIHFIAKTFCNNFPKDK---TLFVIDPRSNTMKRGDLKEELRSILRNIPAFM 383

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----R 459
           ++         K        +  +E +      +++ + D D +V   SN   F     +
Sbjct: 384 LFSKDLLWEPAKYLADLDTKIFIAEDLAAFIEKLKNIIFDYDHIVFL-SNGS-FEGVQSK 441

Query: 460 LINLLLEE 467
           +I+ L  E
Sbjct: 442 IISFLENE 449


>gi|119469212|ref|ZP_01612196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
 gi|119447464|gb|EAW28732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Alteromonadales
           bacterium TW-7]
          Length = 444

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 104/341 (30%), Gaps = 37/341 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A+TGS GK+T   +    L +     A  G+          L  +  D D  + EL 
Sbjct: 112 PVVAVTGSNGKSTVVTLAYDVLKAAGFNVALGGNIGT-----AVLDLLNDDFDVYVLELS 166

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++   A +  ++  HL  +   +    +K  I+ G +       +  
Sbjct: 167 SFQLD----TTTSLKSVSATVLNVSEDHLDRYDSYQAYIDSKLSIYNGTQCIVVNEDDKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                         G +         N              ++     +          +
Sbjct: 223 THPSSSSATAKIGFGTQQGKYCLGQHNC------------STYFFANNEAFLPVDTLAVV 270

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + ++S      +   KAL+ F     R    +    Q      ++S   
Sbjct: 271 GKHNYLNTLAVMALLSPFNISKEAYKKALNEFSGLAHRC---QFVTQQHGVKYFNDSKAT 327

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N  +  AAI  L+  + +     I + G     G+   +    L   L   ++  +   G
Sbjct: 328 NVGATIAAIDSLATETQN----LIVIAG-----GDAKGADLNPLKPYL-QKHVKALICFG 377

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                L     +S   H +  M       +     G+VV++
Sbjct: 378 KDAKKLVALSSKS---HLTNNMSEAVNLAKQLSSPGNVVLL 415


>gi|170748773|ref|YP_001755033.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
 gi|229620046|sp|B1LXZ3|MURC_METRJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|170655295|gb|ACB24350.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 468

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 134/412 (32%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD   +  +  A LVVV+T +      L         V+     LA   R +S    +A
Sbjct: 58  GHD-AKNVEE--AALVVVSTAIRRDNPELQAARERRLPVVRRAEMLAELMRFKS---CVA 111

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           I G+ GKTTT  ++   L +       I     +              ++ + E   S  
Sbjct: 112 IAGTHGKTTTTSLVATLLDAGNLDPTVINGGIIN---AYGTNARMGAGEWMVVEADES-- 166

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                    +   +A++T I P HL +F   + I  A     + +   G   +  D    
Sbjct: 167 ---DGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNIPFYGFAVMCIDHPVV 223

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-------LQGKSMEVVH 285
           + L      +  + I ++G++  AD +L        QS   V         + +  ++V 
Sbjct: 224 QDLV---GHIEDRRIITYGENPQADVRLIDVDLRGGQSRFRVMIRDRRPGYRMEMEDLVL 280

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N    L +   L    D   +AL+ F   + R  R          T+ D+ 
Sbjct: 281 PMPGKHNALNATAALAVAHELGVKPDAIRQALAGFGGVKRRFTRT---GEWNGATIFDDY 337

Query: 346 YNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            +           A       V++ + PH   R  ++  D C     + +  +       
Sbjct: 338 GHHPVEIKAVLKAARASTEHGVIAVVQPHRYTRLQSLFDDFCTCFNDADTVIVAPVYAAG 397

Query: 398 LYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
              I      GF   +L   L    H      E  + L   I      GD V
Sbjct: 398 EQPIE-----GFDRDSLVAGLRSRGHRDARALERPEELAGIIADLAKPGDYV 444


>gi|187479349|ref|YP_787374.1| UDP-N-acetylmuramate--L-alanine ligase [Bordetella avium 197N]
 gi|109892693|sp|Q2KVG1|MURC_BORA1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115423936|emb|CAJ50488.1| UDP-N-acetylmuramate--alanine ligase [Bordetella avium 197N]
          Length = 468

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 134/418 (32%), Gaps = 42/418 (10%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKA 108
           I HA +    A  +V +T +      +       IPV         +  LA   RL+   
Sbjct: 55  IGHAAENVADADAIVTSTAVAGDNPEVIAARLARIPVV----PRAVM--LAELMRLKRG- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++   L++       +     +            +   G  E  
Sbjct: 108 --IAVAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLN--------SAGANAQLGQGEFI 157

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           +    E       + P +A+IT I   H+  +    ++A  K+   E  ++         
Sbjct: 158 VVEADESDASFLNLLPVMAIITNIDADHMDTYGH--DVARLKSAFIEFTQRLPFYGSAVL 215

Query: 229 DSFFELLKAKSHALGIKTIY----SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +    ++     +          S  + +  + Q    +          +    ++EV 
Sbjct: 216 CADDANVREIMPFVSRPITTYGLSSDAQVRAENVQADGTRMRFSVRRQGREQDLPTLEVE 275

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            +  G H  +N L  + + S L        +AL+ F     R  ++              
Sbjct: 276 LNLPGLHNVRNALAAIAVASELGVADAAICQALAGFKGVGRRFTQWGEFPVAEAQGGGRY 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
           S   +       ++     +      R  VL         ++    D   VL   +   +
Sbjct: 336 SVIDDYGHHPVEMAATLAAARGAWPDRRIVLAFQPHRYTRTRDCFEDFVRVLGTADAVLL 395

Query: 402 SHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKS 451
           + V+ +G          AL  AL  +  V   + E +  L   ++  + DGDV+++  
Sbjct: 396 TEVYAAGEAPLVAADGRALARALRVAGKVEPLFVEDVAALPQAVRDFMRDGDVLILMG 453


>gi|291561835|emb|CBL40635.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SS3/4]
          Length = 460

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 133/398 (33%), Gaps = 33/398 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +    A+  + ++P+         L +L            IA++G+ GKTTT  MLT  L
Sbjct: 82  DNPEYAAAAAKNLPILSRA---ELLGQLMKNY-----EKSIAVSGTHGKTTTTSMLTEIL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              KK                    +  ++  G  EL ++   E         P++ +I 
Sbjct: 134 MDEKKNPTISVGGMLD--------SIGGNIRVGGPELFVTEACEYTNSFLSFFPNMEIIL 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  F  IE+I  +  +  E L   G + +N D   ++ +      + + T+ S 
Sbjct: 186 NIEADHLDFFKDIEDIRHSFRKFAELLPANGVLIINSDIRDYKEICD-GLPIKVITVGSD 244

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
               +       + + +  ++  ++       +     G H   N L ++     L    
Sbjct: 245 PAKSHYSAADVTFNENACATYTLLEDGKAIDTITLGVPGIHNVYNSLASIAAAHELGIRG 304

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAISVLSQISP 365
           +     L  F     R ++                    +     A       +     P
Sbjct: 305 EGIRNGLLRFTGTHRRFEKKGMIGGVTVIDDYAHHPQEIAATLAAAKNYPHREIWCVFQP 364

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV-WLSGFHVLALKDALPRSIHV 424
           H   R  A++ D  +   LS + H+ LA++ +     ++   SG     +          
Sbjct: 365 HTYTRTKALMEDFAK--ALSAADHVVLADIYAARETDNLGISSGTLAEKIAAL---GTDT 419

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           HY  + D +  F+  + V+GD +++      G   ++ 
Sbjct: 420 HYFPSFDAIETFLLENCVNGD-LLIT----MGAGDIVK 452


>gi|238752430|ref|ZP_04613907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
 gi|238709363|gb|EEQ01604.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Yersinia rohdei
           ATCC 43380]
          Length = 442

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 126/376 (33%), Gaps = 50/376 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++A ++AITGS GK+T   ++     +             +IGVP     +  +  
Sbjct: 103 FCRENQAPLVAITGSNGKSTVTTLVGEMAKAAGWQV----GVGGNIGVPALSL-LQQENQ 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
             + EL    L      T  +R   A I  +   H   +  G+++  +AK  ++E  +  
Sbjct: 158 LVVLELSSFQL----ETTSSLRASAATILNVTEDHTDRYPFGLQQYRAAKLRVYENAKVC 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +          ++  + G+            D       +   + W+ V+ +   
Sbjct: 214 VVNADDALTMPIRGADSRCISFGV------------DVGDYHLNKQQGEIWLRVRGEKVL 261

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H   N L  L +   +     +++ AL+ F     R    +         
Sbjct: 262 NTREMKLTGRHNYTNALAALALADAVGIPRSSSLTALTTFTGLPHRF---QLVFEHNGVR 318

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I++S   N  S +AA+  L       +G    +LG   +  + S      L   L   +
Sbjct: 319 WINDSKATNVGSTEAALDGLQV-----DGTLHLLLGGDGKSADFS-----GLTRFLQGDH 368

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS----- 452
           I  ++  G     L    P    +   ETM+   + +  +++  D+V++    +S     
Sbjct: 369 I-KIYCFGRDGEQLAQLRPEVSQLT--ETMEQAMVLLAKTVIPRDMVLLSPACASLDQFR 425

Query: 453 ----NSCGFYRLINLL 464
                   F RL   L
Sbjct: 426 SFEQRGDEFARLAREL 441


>gi|221065139|ref|ZP_03541244.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
 gi|220710162|gb|EED65530.1| UDP-N-acetylmuramate/alanine ligase [Comamonas testosteroni KF-1]
          Length = 477

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 82/439 (18%), Positives = 147/439 (33%), Gaps = 46/439 (10%)

Query: 56  FILHAVQKGAG--LVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA +  AG   VV +T +              IPV         +  LA   R +  
Sbjct: 54  FVGHAAENVAGTDAVVTSTAVQGDNPEVLAAREKKIPVV----PRALM--LAELMRFKQG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFE 166
              IAI G+ GKTTT  ++T  L+        +        +    A   +   D+ + E
Sbjct: 108 ---IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGK----LNSAGANAKLGHGDYIVVE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFL 225
              S    +  L     P +AV+T I   H+  +             F   +   G   L
Sbjct: 161 ADESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGRAIL 215

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             D      +  +         ++      A     +  +       +       +EVV 
Sbjct: 216 CVDSPAVREILPRLARPVTTYGFAEDAQVRAVNVRAEAGRMRFTVRRQNGQSYPDLEVVL 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDE 344
              G H   N L  + +   L    +  ++AL  F     R +RY       G    + +
Sbjct: 276 SLPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGELPAADGNMFTVID 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
            Y  +P  M A ++      P     +  VL         ++    D  +V+   +   +
Sbjct: 336 DYGHHPVEMAATLAAARGAFPG----QRLVLAFQPHRYSRTRDCFEDFVKVIGSADSVLL 391

Query: 402 SHVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           + V+ +G          +L  AL  +  V   + E +  +   I ++   GDV++   + 
Sbjct: 392 AEVYAAGEAPIVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQAGDVLLCMGAG 451

Query: 454 SCGF--YRLINLLLEEFPA 470
           S G    +L+ +L ++ PA
Sbjct: 452 SIGAVPGKLVEMLQKQEPA 470


>gi|315924910|ref|ZP_07921127.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621809|gb|EFV01773.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 480

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 105/416 (25%), Gaps = 36/416 (8%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              V      +    +L IP+    D LG L+++            I + G+ GKTTT  
Sbjct: 80  TAAVHEDNPEMIRANALDIPLVERSDYLGLLSQVF--------PKTIGVAGTHGKTTTSS 131

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L   +                +         D+ + E       E          
Sbjct: 132 MIATLLHCAEMD---PSVSIGGNIGVIGGNATLGKSDYLVIESC-----EYVDSFLKTEH 183

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I VIT I   HL  F G  +          G        +       ++L   S     
Sbjct: 184 FIGVITNIEEDHLDYFKGGLKQIKHSFHD-FGSILPPDGLMIAYGDSDDVLDVVSDLACQ 242

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              Y          +   +       +                 G H   N +  +    
Sbjct: 243 VITYGLSDKNEWVARNITYNDEGNPFFDAYHNGTLYGRFALRIPGQHNVLNAMACIACAD 302

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYNANPASMKAAI 357
            L    +T  +AL  F   + R +                  T +    +A         
Sbjct: 303 YLNIQKETVEEALDHFGGAKRRFEFRGAVGGINVYEDYAHHPTELKVVIDACLNHAH--N 360

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            +     PH   R   +  +  +  E      I         N             +K  
Sbjct: 361 KLWVVYQPHSYSRIYYLFDEFVKSFEKVDKLVISEIYSNRETN-DWDIFPEDLAKRIKQN 419

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS---NSCG-FYRLINLLLEEFP 469
               +          +  F+  ++   D+V+V  +   N       L++ L E++P
Sbjct: 420 YQ--VPAVVISEFADIVKFLTDNVEADDLVLVAGAGDINKVAYM--LVDALREKYP 471


>gi|114773356|ref|ZP_01450560.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
 gi|114546290|gb|EAU49201.1| UDP-N-acetylmuramate--L-alanine ligase [alpha proteobacterium
           HTCC2255]
          Length = 470

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/405 (17%), Positives = 136/405 (33%), Gaps = 40/405 (9%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            AV+    +V+ +     +         G+  V  A   LA   RL+S    IAI G+ G
Sbjct: 73  EAVE---VVVISSAIKAGNKELDHARALGLPIVRRA-EMLAELMRLKSN---IAIAGTHG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++    + +          N  I             D+ + E   S        
Sbjct: 126 KTTTTTLVA---TLLDHGGIDPTVINGGIIHAYGSNARMGTGDWMVVEADES-----DGT 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IAV+T I P H+ ++   + +  A       +   G    N D    + L  +
Sbjct: 178 FNKLPATIAVVTNIDPEHMEHYGSFDNLKDAFYNFVSNIPFYGLAICNTDHPEVQSLVGR 237

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   I ++G +K AD +    K     ++ ++ LQ ++  +    +      N+  
Sbjct: 238 VDDR---RIVTYGFNKQADVRAENLKFKKGCAYFDIALQSENAFIKDVMLPMPGDYNVSN 294

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-----NPASM 353
            L  V++       A +  +     +G  +R+         T+ID+  +         S 
Sbjct: 295 ALAAVAVSRHLGMDAKQIRNALLEFKGVKRRFTHVGEINGVTIIDDYAHHPVEISAVLSA 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +    I+ H   R    L ++ E    S +          +  I+ V+ +G   + 
Sbjct: 355 AKQATSGKVIAVHQPHRYSR-LDNLFEDFCNSFND-------ADVVGITDVYSAGEEPIK 406

Query: 414 ------LKDALPRSIHVHYSETMDGL--FLFIQSSLVDGDVVVVK 450
                 L   L    H +    +D      F   +  +GD ++V 
Sbjct: 407 NRNRDSLVAGLKARGHRNAFAVVDEADLKKFFLENCKNGD-LLVC 450


>gi|121587626|ref|ZP_01677390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|153818416|ref|ZP_01971083.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|153830351|ref|ZP_01983018.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255746924|ref|ZP_05420869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262161533|ref|ZP_06030643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
 gi|30316132|sp|Q9KPG5|MURD_VIBCH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121548136|gb|EAX58209.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           2740-80]
 gi|126511049|gb|EAZ73643.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           NCTC 8457]
 gi|148874158|gb|EDL72293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           623-39]
 gi|255735326|gb|EET90726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholera
           CIRS 101]
 gi|262028844|gb|EEY47498.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           INDRE 91/1]
          Length = 440

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 100 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 152 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 208 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 253

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 254 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 313

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 314 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 363

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 364 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 412


>gi|154498342|ref|ZP_02036720.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
 gi|150272653|gb|EDM99831.1| hypothetical protein BACCAP_02331 [Bacteroides capillosus ATCC
           29799]
          Length = 491

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 110/392 (28%), Gaps = 29/392 (7%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           KGA LV+           +S        V           R    A  + I+G+ GKTTT
Sbjct: 104 KGAKLVIRTAAAHDDNPEISGAHARGIPVFERAQAWGAIMRGYKNA--LCISGTHGKTTT 161

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M T    + +     +      +        +      G  +  +    E        
Sbjct: 162 TSMCTHIAMAAQADPTVMIGGTLPL--------LGAGHRVGRGDTIILESCEYCNSFLSF 213

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AVI  I   HL  F  +E++  +     + + + G I  N DD             
Sbjct: 214 FPTVAVILDIEADHLDFFKDLEDVEKSFRTFADLVPEDGVIVANRDDENTMHTLE----G 269

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
             + + +FG  +               ++  +        V     G H  +N L     
Sbjct: 270 EARPMVTFGLEEGDVHAANLTWSRGLPTFDVIWKGQPFAHVSLRVPGEHNVKNALAAAAS 329

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN-----ANPASMKAAI 357
             +L        + LS F     R +          +              +  S     
Sbjct: 330 AIVLGMPAKAVEEGLSAFRGAARRFEHKGSYHGAEVYDDYAHHPGELKALLSAVSGLGYD 389

Query: 358 SVLSQISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
            ++    PH   R  A+  D  + + E   +   ++       N       G     L  
Sbjct: 390 RIICAFQPHTYSRTKALFDDFVQVLREPDVTLLAEIFA-AREDN-----TIGISSRDLAA 443

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +P S    Y  T+  L   +      GD+++
Sbjct: 444 QIPGS---RYFATLPELTDALAELAQPGDLIL 472


>gi|85858527|ref|YP_460729.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
 gi|109892747|sp|Q2LR47|MURC_SYNAS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|85721618|gb|ABC76561.1| UDP-N-acetylmuramate--alanine ligase [Syntrophus aciditrophicus SB]
          Length = 480

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/362 (18%), Positives = 121/362 (33%), Gaps = 34/362 (9%)

Query: 99  AVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           A       K  + IA++GS GKTTT  M+   ++S       +      +G   + ARM 
Sbjct: 112 AEMLAELLKMKVSIAVSGSHGKTTTTSMIATVMASGGLDPTMV--IGGKLGSIGSNARMG 169

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +F + E   S           + P +AVIT I   HL  + GIE+I  A  +    +
Sbjct: 170 HG-EFIVAEADES-----DGSFLKLSPSLAVITNIDREHLDFYRGIEDIKDAFLQFANIV 223

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G+  L  DD   + + +       +   ++G    AD++ ++ +     +  E+  +
Sbjct: 224 PFYGSAVLCLDDPHIKTILSDI----KRKTITYGMEPAADYRAQELRFNGAVTEYELYYR 279

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            +    V     G     N L T+ +   L        + L  +     R +       +
Sbjct: 280 TECLGSVTLSVPGMFNVYNSLATVAVARELDMTFPDIQQGLKSYVGVGRRLE----VKGK 335

Query: 337 GFFTLIDESYNANPASM---------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                + + Y  +P  +              ++    PH   R  A+  +       +  
Sbjct: 336 IAGVTVVDDYGHHPTEISATLAAARQVWKNRMIVVFQPHRYTRTQALFREFLGAFTEADL 395

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD 445
             +      S   I      G    AL D +       V Y      +  ++ + +  GD
Sbjct: 396 LIVTDIYPASEDPIE-----GVTAEALCDGIRSLTRREVRYIPNFSDITDYLMTVVQPGD 450

Query: 446 VV 447
            V
Sbjct: 451 TV 452


>gi|332557537|ref|ZP_08411859.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
 gi|332275249|gb|EGJ20564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhodobacter
           sphaeroides WS8N]
          Length = 465

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/395 (15%), Positives = 117/395 (29%), Gaps = 35/395 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAIT 114
             ++V +  +  +     PV            +D+       A            ++ +T
Sbjct: 67  VALLVTSPGIPHLYPAPNPVIARATAAGVPVDNDIGLFFRSFATRDWDAFDQMPRVVCVT 126

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           GS GK+TT  ++   LS   +          +IG  +       D +  + EL       
Sbjct: 127 GSNGKSTTTALIHHILSEAGR----PTQMAGNIGRGVLDLDPARDGEVVVLELSSYQTDL 182

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R LT    P +AV T ++P HL    G+    +AK  +F        +    +     L
Sbjct: 183 ARALT----PDVAVFTNLSPDHLDRHGGMGGYFAAKRRLFAEGGPDRAVIGVDEPEGLYL 238

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
               S A     +      +  +                 + +  +   +    G   A 
Sbjct: 239 AGQLSVAPEDDRVIRISAGQKLERFGWSVFARKGFLAEWRKGRQMASIDLRAMPGLPGAH 298

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N        +          +  +      G   R +    +G    +++S   N  S  
Sbjct: 299 NHQNACAAYAACRTLGLAPRQIEAALASFAGLPHRSQTVGEKGGVRFVNDSKATNVDSAA 358

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A+    +I     G     LG   + G ++   H  L  V+        +L G      
Sbjct: 359 KALQAFPKIRWIAGG-----LG--KDGGIVALQPH--LGSVVKA------YLIGHSARDF 403

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +  + H    ETM+            G+VV++
Sbjct: 404 ALQIGATDH-EICETMERAVARAAEEAQPGEVVLL 437


>gi|229521234|ref|ZP_04410654.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
 gi|229341766|gb|EEO06768.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae TM
           11079-80]
          Length = 467

 Score = 49.9 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 127 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 178

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 179 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 235 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 280

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 281 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 341 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 390

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 391 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|294677022|ref|YP_003577637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
 gi|294475842|gb|ADE85230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodobacter
           capsulatus SB 1003]
          Length = 466

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 116/402 (28%), Gaps = 38/402 (9%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK-- 107
           + GA      ++ +  +  +     PV            +D+       A A        
Sbjct: 60  RAGAFEGIAALITSPGIPHLYPRPNPVIAAAMAAGVPVDNDIGLFFRSWATAGWDDFDVT 119

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              + ITGS GK+TT  ++   L    +          +IG  +     P D +  + EL
Sbjct: 120 PRTVCITGSNGKSTTTALIHHILKHAGRATQM----AGNIGRGVLDLDPPEDGEVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P IAV T ++P H+   SG+    +AK  +F        +    
Sbjct: 176 SSYQTDLARALT----PDIAVFTNLSPDHMDRHSGMGGYFAAKRRLFAEGAPDRAVIGVD 231

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +     L    +       +     +K                    + +  +   +   
Sbjct: 232 EPEGVYLANQMAMGATDDRVIRVSSAKKLGDFGWSVFARKGFLAEWRKGRQVASIDLRGV 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                A N        +   +           FH   G   R +    +     +++S  
Sbjct: 292 KALPGAHNHQNACAAYAACRSLGLAPKLIEEAFHSFGGLPHRSQTIAEKRGVRYVNDSKA 351

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  S   A+   S I          ++G M + G +S       A    L ++   +  
Sbjct: 352 TNVDSAAKALEAFSNIR--------WIVGGMGKEGGVS-------ALKPLLGSVKKTYFI 396

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G         L    H    ETM+            GD V++
Sbjct: 397 GHSGRDFALELAPLEH-EICETMERAVARAAEEAEPGDTVLL 437


>gi|242237993|ref|YP_002986174.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
 gi|242130050|gb|ACS84352.1| UDP-N-acetylmuramate [Dickeya dadantii Ech703]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 119/401 (29%), Gaps = 35/401 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V   +  +I  +S P +  D VL          R R    +IA+ G+ GKTTT  M+T  
Sbjct: 78  VEAVLERNIPYVSGPQWLHDHVL----------RDRW---VIAVAGTHGKTTTAGMVT-- 122

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAV 188
                  Y          G     AR+     F +           +        P   +
Sbjct: 123 WILEACGYQPGFVIGGVPGNFTVSARLGQSPFFVVEADEYDCAFFDKRSKFVHYSPRTLI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  ++ I      +   +  +G I +  +D   + +         + + 
Sbjct: 183 LNNLEFDHADIFDDLKAIQKQFHHLVRLVPGSGRIIIPANDLHLKQVMTMGCWSEQELVG 242

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G  K       K        +          EV    +G H   N LM +     +  
Sbjct: 243 EEGIWKA------KKVASDASVFQVYLDNELVGEVSWKLVGEHNMHNGLMAIAAARHVGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               A         +     R            + + +  +P ++ A ++ L        
Sbjct: 297 MPGDAC----QTLGEFINAHRRLELRGTADGVSVYDDFAHHPTAILATLAAL----RSKV 348

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLALKDALPRSIHVH 425
           G    +L  +       +  H       +L     V+L           + A       H
Sbjct: 349 GGTARILAVLEPRSNTMKMGHCKNELAPALGRADGVFLFQPQHIPWQVAEVADACVQPAH 408

Query: 426 YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +S  +D L   I  +   GD ++V  SN  GF  + + LL+
Sbjct: 409 WSADVDTLVDMIVKTAQPGDHILV-MSNG-GFGNIHSKLLD 447


>gi|161581989|ref|NP_232033.2| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|254849525|ref|ZP_05238875.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|298500237|ref|ZP_07010042.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
 gi|254845230|gb|EET23644.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae
           MO10]
 gi|297540930|gb|EFH76984.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Vibrio cholerae MAK
           757]
          Length = 444

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 104 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 155

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 156 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 212 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 257

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 258 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 317

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 318 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 367

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 368 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 416


>gi|145297832|ref|YP_001140673.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850604|gb|ABO88925.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 456

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 114/371 (30%), Gaps = 36/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML                     G     AR+     F + E   
Sbjct: 105 VLAVAGTHGKTTTASMLA--WVLEYAKLEPGFLIGGVPGNFPVSARLG-SAPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQ 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            D     ++       ++           D + +  K   + S  EV     K  EV   
Sbjct: 222 ADDNLTAVRKMGCWSEVE------LVGQDDAKWKAVKLADDGSAFEVWLDGSKQGEVHWE 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG H   N LM +         V+  I AL  F   + R +          +    + +
Sbjct: 276 CIGEHNVNNGLMAIAAARHAGVMVEHGIAALRQFKSPKRRMELKGEVAGISVY----DDF 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +P +++   ++    +  G+ R +AVL    +  ++G   +                 
Sbjct: 332 AHHPTAIE--TTLGGLRAKVGKARILAVLEPRSNTMKLGVHKEEL------AACFDGADE 383

Query: 404 VWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V+       G+ +  +   + R         ++ L   + +   DGD +++  SN  GF 
Sbjct: 384 VFFFQPPNIGWDLGEVTAHMSR--PAKVFNELETLINRLVAECRDGDHILI-MSNG-GFG 439

Query: 459 RLINLLLEEFP 469
            + + L+    
Sbjct: 440 GIHDKLIARLK 450


>gi|121998786|ref|YP_001003573.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
 gi|121590191|gb|ABM62771.1| UDP-N-acetylmuramate [Halorhodospira halophila SL1]
          Length = 454

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 123/358 (34%), Gaps = 20/358 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M        +             G     AR+     F +     
Sbjct: 105 VVAIAGTHGKTTTASM--ATWILERCGLDPGYLIGGAPGFSERSARLGTGSPFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +       +P + ++  +   H   +  +E IA+        +   G + +N D
Sbjct: 163 DTAFFDKRAKVVHYQPRVLLLNNLEFDHADIYPDLEAIATQLHHAIRTVPANGRVLINGD 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     + A+     ++     G   + D+++   +       +       +++      
Sbjct: 223 DPHLPSVVARGCWSRLER---IGFGADNDWRIDADEAAEHAVLVHRGTPLGALQPP--QP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +   +   AD  TA+KA++ F     R +   C         + + +  
Sbjct: 278 GRHNLANAAAAVAAAASAGADPTTAVKAINEFPGVRRRLELRGCVDG----VEVIDDFAH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P+++ A ++ L+        R +AVL        L    H  LAE L   + + V    
Sbjct: 334 HPSAVAATLNALAT----PGRRLLAVLEPRSNTMRLGIHRH-QLAEALGHADQAFVLTPP 388

Query: 409 FHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               ++ +AL      +H +  +  L     +    GD +VV  SN   F  +   LL
Sbjct: 389 DLPWSVSEALAPLGERLHTAAEVSDLARLALAKARPGDCLVV-MSNG-AFGDIHERLL 444


>gi|238918401|ref|YP_002931915.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, [Edwardsiella ictaluri 93-146]
 gi|238867969|gb|ACR67680.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase, putative [Edwardsiella ictaluri 93-146]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 132/418 (31%), Gaps = 45/418 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V T +  +I  +S P +  D+VL                 +IAI G+
Sbjct: 67  IGNALARGNPC--VETILERNIPYVSGPQWLHDEVLR-------------HRWVIAIAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+          Y          G     AR+     F I           +
Sbjct: 112 HGKTTTAGMVN--WILESCGYEPGFVIGGVPGNFSVSARLGNSPFFVIEADEYDCAFFDK 169

Query: 177 FLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                   P   ++  +   H   F  +  I      +   +   G I L   D+  + +
Sbjct: 170 RSKFVHYCPRTLILNNLEFDHADIFDDLRAIQRQFHHLVRLVPGKGRIILPAGDASLKQV 229

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQ 294
            A          +S  +    +      +  ++ S   V        EV    +G H   
Sbjct: 230 MA-------MGCWSEQELCGDEAAWNVTRLSADASHFSVSLDGACVGEVQWTLVGEHNMH 282

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N LM +     +      A +A           +R      Q     + + +  +P ++ 
Sbjct: 283 NGLMAIAAARHVGVPPAEACRA----LGSFINARRRLELRGQAHGVSVYDDFAHHPTAIL 338

Query: 355 AAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           A ++ L      G  R +AVL    +  +MG         L           V+L     
Sbjct: 339 ATLAALRG-KVGGTARILAVLEPRSNTMKMGVCKNELAPALGR------ADEVYLYQPQH 391

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                ++ A       ++S  +  L   I  +   GD ++V  SN  GF  + + LL+
Sbjct: 392 IPWQVVEVAEACVQPAYWSADLGTLVEMIVKNAQPGDHILV-MSNG-GFGDIHDRLLQ 447


>gi|238893071|ref|YP_002917805.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044865|ref|ZP_06017908.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|238545387|dbj|BAH61738.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259037834|gb|EEW39062.1| UDP-N-acetylmuramate-alanine ligase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 491

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 120/400 (30%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  V+     ++V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHP---------------KEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D    ++AL  F                   G+        + G      ++      + 
Sbjct: 310 DDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMVFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     V              + S L   D+V+V+ 
Sbjct: 425 LCRTIRGRGKVDPILVPDSAQAAEMLASVLTGNDLVLVQG 464


>gi|220920537|ref|YP_002495838.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium nodulans ORS 2060]
 gi|219945143|gb|ACL55535.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           nodulans ORS 2060]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 73/404 (18%), Positives = 124/404 (30%), Gaps = 51/404 (12%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V    S  +PV G  D+     + A  A     A  +AITG+ GK+TT  ++   L    
Sbjct: 86  VKRAASAGVPVIG--DIELFCRERATTA---PDAPFVAITGTNGKSTTTALIAHVLRETG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
                      +IG  +     P      + E+    +     LT  ++P + V+  I P
Sbjct: 141 HDVQMG----GNIGTAILSLAPPAPGRVHVIEMSSFQID----LTPTLKPSVGVLLNITP 192

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +   A  K  +      +    +  DD +   + A+    G  T    G++ 
Sbjct: 193 DHLDRHGDMANYAGIKERLI---ASSDHAVIGVDDDYTRAIAARH--AGPLTRVHVGETA 247

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                L +     +    E       +  +    G H  QN  +   +   L    D   
Sbjct: 248 PGPGILARHGVLIDG-CTEPPSPVADLTGIPSLRGSHNWQNAGIAYAVARALGVAPDAFA 306

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +AL  F     R         +G    I++S   N  S + A++               +
Sbjct: 307 QALRSFPGLPHR---MEEVGRRGSVLFINDSKATNADSTEKALAAF-------PRVHWIL 356

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            G   E G  S + +           I+H +L G    A    L     V    T++   
Sbjct: 357 GGKPKEGGIASLAPYFP--------RIAHAYLIGAASDAFAATLEGHAPVSRCGTLEAAV 408

Query: 435 LFIQSSL--VDGDVVVV---KSS---------NSCGFYRLINLL 464
                        VV++    +S             F  ++  L
Sbjct: 409 AQAAEDAAHEPEAVVLLSPACASYDQFRSFEDRGDQFRAMVRAL 452


>gi|2149905|gb|AAC45635.1| D-glutamic acid adding enzyme [Enterococcus faecalis]
          Length = 456

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 93/320 (29%), Gaps = 44/320 (13%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  I        P IAVIT I  AHL      +E  +AK  I + +   
Sbjct: 164 DDLVMELSSFQLMGIE----TFHPQIAVITNIFEAHLDYHGSRKEYVAAKWAIQKNMTAE 219

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T+ LN++    + L           +    K       L   K    +       +   
Sbjct: 220 DTLILNWNQVELQTLAK---TTAANVLPFSTKEAVEGAYLLDGKLYFNE-------EYIM 269

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                   G H  +N L  + +  +         ++L+ F     R    +         
Sbjct: 270 PADELGIPGSHNIENALAAICVPKLKNVSNAQIKQSLTNFSGVPHRT---QFVGEVQQRR 326

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S   N  + + A+S             + +L    + G            V +L  
Sbjct: 327 FYNDSKATNFLATEMALSGFDNQK-------LLLLAGGLDRGNSFDEL------VPALLG 373

Query: 401 ISHVWLSGF--HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--- 452
           +  + L G     LA     P    + ++E +              D +++    +S   
Sbjct: 374 LKAIVLFGETKKKLAEAAKKPNIETILFAENVQTAVTIAFDYSEKDDTILLSPACASWDQ 433

Query: 453 ------NSCGFYRLINLLLE 466
                     F + +  L E
Sbjct: 434 YPNFEVRGEAFMQAVQQLKE 453


>gi|296140341|ref|YP_003647584.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
 gi|296028475|gb|ADG79245.1| UDP-N-acetylmuramate/alanine ligase [Tsukamurella paurometabola DSM
           20162]
          Length = 495

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/482 (16%), Positives = 149/482 (30%), Gaps = 83/482 (17%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK--GPHYD-GHDFILHAVQK 63
              +L A  G   G   +         SR +       A++  G     GH     A+  
Sbjct: 28  IARILLARGGQVSGSDAKE--------SRGV------VALRARGAQVQVGHS--ADALDL 71

Query: 64  ---GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
              G  +VV     +              IPV    +V   L  L    R       + +
Sbjct: 72  LPGGPTVVVTTHAAIPKDNPELVEAHRRGIPVILRPEV---LADLMEGYR------TLLV 122

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHL 172
           +G+ GKT+T  M  + L           S+     +  +         D  + E   S  
Sbjct: 123 SGTHGKTSTTSMAVVGLQHCGGN----PSFAVGGELNESGTNAFHGTGDVFVAEADESDG 178

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
             +++      P + V+T +   HL  F   E+  +      E +   GT+ +  DD   
Sbjct: 179 SLLQYS-----PDVVVVTNVEADHLDFFGSEEKYVAVFDAFTERIRPGGTLVVCLDDPGS 233

Query: 233 ELLKAKSHAL---GIKTIYSFGKSKNAD-------------FQLRKWKQCSEQSWMEVQL 276
             L  ++HA        ++ +G+  + D             ++ R      +  + +   
Sbjct: 234 AALGQRTHAALRARGVRVFGYGEGTHRDLAPDVTLIAELLDYKPRAEGGMLKVRFSDENR 293

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           Q     ++    G HMA N +     V  L       I  +  F     R +        
Sbjct: 294 QVTERAIMLSVPGKHMALNAIAATIAVVNLGYPTAKVIAGIESFGGVHRRFQ----LRGT 349

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                + + Y  +P  ++A ++  +++          ++     +   ++ F  + AE L
Sbjct: 350 EDGVRVFDDYAHHPTEVRAVLTAAAEMVAKQAVPGRVIVAFQPHLYSRTEQFAAEFAEAL 409

Query: 397 SLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           SL    HV              G     + + +  +  V Y  +   +   +      GD
Sbjct: 410 SLA--DHVVALDVYGAREAPLPGITGERIAEKV--TTDVTYVPSQADVAGTVVDIARPGD 465

Query: 446 VV 447
           VV
Sbjct: 466 VV 467


>gi|15896472|ref|NP_349821.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
 gi|25008805|sp|Q97E89|MURC_CLOAB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15026298|gb|AAK81161.1|AE007818_7 UDP-N-acetylmuramate-alanine ligase [Clostridium acetobutylicum
           ATCC 824]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 117/367 (31%), Gaps = 37/367 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +       IAI+G+ GKTTT  M++    +       +   N  I   + 
Sbjct: 101 EFLGSLMKGHKYN-----IAISGTHGKTTTTSMVSHIALTEDVDPTILVGGNLDI---IN 152

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    D+ I E        + F      P+I VI  I   HL  +  I++I +  A+
Sbjct: 153 GNVLAGKSDYFITEACEYKASFLEFY-----PYIGVILNIDADHLDYYKNIDDIENTFAK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               + K G +  N DD     + +         + SFG     D + +           
Sbjct: 208 FVNLIPKEGYLIANADDKRVARVASN----ATCNVVSFGIDNG-DIRAKNISFNESGFSS 262

Query: 273 EVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               +       +  +  G H   N L  +     L     + I  L  F     R +  
Sbjct: 263 FDVYKSSELLFNIELNVPGKHNILNALSAIASALTLKISHKSIIDGLKSFKGTHRRFE-- 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEM 381
                      + + Y  +P  +KA +                PH   R +++  D    
Sbjct: 321 --IKGVKNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVFQPHTYSRTLSLFDDFSNS 378

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                   +      +    + V  S     A+     +S ++H   + + +  + +S L
Sbjct: 379 FSGVDELVLADI-YAAREKDTGVVSSLKLSEAINKNGVKSSNLH---SFEDIVNYFKSKL 434

Query: 442 VDGDVVV 448
            DGD+++
Sbjct: 435 NDGDILL 441


>gi|325510630|gb|ADZ22266.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium acetobutylicum
           EA 2018]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 117/367 (31%), Gaps = 37/367 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +       IAI+G+ GKTTT  M++    +       +   N  I   + 
Sbjct: 101 EFLGSLMKGHKYN-----IAISGTHGKTTTTSMVSHIALTEDVDPTILVGGNLDI---IN 152

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    D+ I E        + F      P+I VI  I   HL  +  I++I +  A+
Sbjct: 153 GNVLAGKSDYFITEACEYKASFLEFY-----PYIGVILNIDADHLDYYKNIDDIENTFAK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               + K G +  N DD     + +         + SFG     D + +           
Sbjct: 208 FVNLIPKEGYLIANADDKRVARVASN----ATCNVVSFGIDNG-DIRAKNISFNESGFSS 262

Query: 273 EVQLQGKS--MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
               +       +  +  G H   N L  +     L     + I  L  F     R +  
Sbjct: 263 FDVYKSSELLFNIKLNVPGKHNILNALSAIASALTLKISHKSIIDGLKSFKGTHRRFE-- 320

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEM 381
                      + + Y  +P  +KA +                PH   R +++  D    
Sbjct: 321 --IKGVKNGITVIDDYAHHPTEIKATLDAAKNYPHNKIYCVFQPHTYSRTLSLFDDFSNS 378

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
                   +      +    + V  S     A+     +S ++H   + + +  + +S L
Sbjct: 379 FSGVDELVLADI-YAAREKDTGVVSSLKLSEAINKNGVKSSNLH---SFEDIVNYFKSKL 434

Query: 442 VDGDVVV 448
            DGD+++
Sbjct: 435 NDGDILL 441


>gi|292492398|ref|YP_003527837.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
 gi|291580993|gb|ADE15450.1| UDP-N-acetylmuramate [Nitrosococcus halophilus Nc4]
          Length = 457

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 102/365 (27%), Gaps = 27/365 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GKTTT  +L   L          IG      GV   L R      + + E  
Sbjct: 105 VLAVAGTHGKTTTSSLLAWILEYAGHGPGYLIGGVPRDFGVSAQLGR----SPYFVVEAD 160

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                           RP   V+  +   H   F  +E I      +   +   G I   
Sbjct: 161 EYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIFPNLEAIQQQFHYLVRTVPSNGLILAP 220

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             D+  E + A      +      G +K  D  L       + S  EV  +G     V  
Sbjct: 221 AGDNALEAVLAMGCWTPVAP---IGMAKEKDCALTAAAVAEDGSRFEVWREGAYQSQVSW 277

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N+   L  +           +A       +G  +R          T+ D+  
Sbjct: 278 S--LLGHHNVANGLAAIGAAHHAGVPIEQACQALERFQGVRRRLEVCGKVKGVTVYDDFA 335

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
                      ++   ++        A L  + E    +     H +            V
Sbjct: 336 -------HHPTAIAKTLAGLRARVGEARLIAVLEPRSNTMKLGIHKESLAPALTLA-DRV 387

Query: 405 WLS--GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
            L         L  A             +  +   + +   +GD +V+  SN  GF  + 
Sbjct: 388 LLYQPPDLAWPLAPAFHSLGAKASVFADIQAIVDNLCAHAQEGDHIVI-MSNG-GFGHIH 445

Query: 462 NLLLE 466
             LL+
Sbjct: 446 QRLLK 450


>gi|119897176|ref|YP_932389.1| UDP-N-acetylmuramate--L-alanine ligase [Azoarcus sp. BH72]
 gi|166222953|sp|A1K3U7|MURC_AZOSB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119669589|emb|CAL93502.1| probable UDP-N-acetylmuramate-L-alanine ligase [Azoarcus sp. BH72]
          Length = 467

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 80/409 (19%), Positives = 140/409 (34%), Gaps = 33/409 (8%)

Query: 53  GHDFIL-HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     A    A  +VV+T +      +         ++     LA   RL+S    I
Sbjct: 56  GHDAANVEA----ADALVVSTAVKNDNPEVIAARARHIPIVPRAQMLAELMRLKSG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L+        +     +              DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASILAEGAMDPTFVIGGRLN---AAGANARLGKGDFLVAEADES- 164

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDS 230
                    ++ P I+V+T I   H+  +             F + L   G   L  DD 
Sbjct: 165 ----DASFLMLSPVISVVTNIDADHMDTYGHDFARLKQAFVDFLQRLPFYGVAVLCEDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +        ++   S   +  A+    +  +             +  +VV +  G 
Sbjct: 221 HVRSIMPLVSKQVVRYGLSETANIRAENIRAEGGRMIFDVLRVNGSTTRLADVVLNLPGL 280

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNAN 349
           H  +N L  + + + +    +  +KAL+ F     R +RY         T    + Y  +
Sbjct: 281 HNVRNALAAIAVATEVQVPDEAIVKALAEFSGVGRRFQRYGEVAAPSGGTFTLIDDYGHH 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWL 406
           P  M+A ++      P        VL         ++    D  +VLS  +   ++ V+ 
Sbjct: 341 PVEMEATLAAARGAFPGR----RLVLAFQPHRYTRTRDCFEDFVKVLSTVDALLLAEVYA 396

Query: 407 SGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
           +G          AL  AL  +  V   + E + G+   +  ++ DGDVV
Sbjct: 397 AGEAPIVAADGRALSRALRVAGKVEPVFVEDIGGMPQAVLEAVRDGDVV 445


>gi|154488897|ref|ZP_02029746.1| hypothetical protein BIFADO_02206 [Bifidobacterium adolescentis
           L2-32]
 gi|154083034|gb|EDN82079.1| hypothetical protein BIFADO_02206 [Bifidobacterium adolescentis
           L2-32]
          Length = 281

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL 81
             +  +  I+ D  S+ P   F        D H  +  A ++GA   +V   +      +
Sbjct: 19  AAEVTITSIADDVESVRPGALFV--PSADVDVHQ-LSQAQEQGAYGAIVPHALRGQTDDI 75

Query: 82  SIPVFGVDDVLGALNKLAVAARLRSK--ATIIAITG 115
            IP+   +  +G L KL             + AITG
Sbjct: 76  QIPLIYAEPTMGQLGKLVSDMAGNPSDALAVFAITG 111


>gi|312878093|ref|ZP_07738028.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795135|gb|EFR11529.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 455

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 107/363 (29%), Gaps = 30/363 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI+G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMKNFKN-----VIAISGTHGKTTTTSMIGYILKKACYN---PTILVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKEYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G +  N DD   + + +K H   +         K           C++  + 
Sbjct: 199 FAQKIPTSGFLVANCDDKNVKDVISKLHTQVVCIST-----KEKADIFAGNISCNDGYYE 253

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                     + H  +      N+   L   ++ +     ++          G  +R   
Sbjct: 254 FDVKNNNDEILAHIKLNIPGFHNVYNALAAFAVTSKLGVESLTIEHALSEFCGASRRLEK 313

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHID 391
                   L D+  +          + L+ +    EG+  A+          S  +   +
Sbjct: 314 VGEFDGIYLFDDYAHHPTE----IKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAE 369

Query: 392 LAEVLSLYNISHVW------LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
             ++     ++ V+        G     L   L    I   Y    + +  ++      G
Sbjct: 370 SLKLADKVIVTDVYAAREKNTFGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAKKG 429

Query: 445 DVV 447
           D++
Sbjct: 430 DII 432


>gi|237809280|ref|YP_002893720.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
 gi|237501541|gb|ACQ94134.1| UDP-N-acetylmuramate [Tolumonas auensis DSM 9187]
          Length = 456

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 113/372 (30%), Gaps = 36/372 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I + G+ GKTTT  M+   L                 G     AR+     F + E   
Sbjct: 105 VIGVAGTHGKTTTASMVAWILEHAGLEP--GFLIGGVPGNFPFSARLG-KAPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP   ++  +   H   F  +  I      +   +   G I +  
Sbjct: 162 YDCAFFDKRSKFVHYRPRTLIMNNLEYDHADIFPDLASIQRQFHHLVRTVPSNGRILMPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D     ++       ++ +   G +  A             +++ +       EV   G
Sbjct: 222 HDPALAEVRTMGCWSEVELVEGDGANWQAKLLKED-----GSAFVVLLNGEVQGEVHWSG 276

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDE 344
           +G H   N LM +             I ALS F   + R +             F     
Sbjct: 277 LGRHSVHNGLMAIAAARHAGVRTADGIAALSEFVMPKRRMELRGEVAGIKVYDDFAHHPT 336

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISH 403
           +     A ++A +     ++          +G            H  +L + L   + ++
Sbjct: 337 AIATTIAGLRANVGTARILAVLEPRSNTMKMG-----------VHQGELIKSLVQADKAY 385

Query: 404 VWL---SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
           ++     G+ +  L    P    V +   ++ L   + +    GD ++V  SN  GF   
Sbjct: 386 MFAPTGLGWDIHQLAQKAPIPTTVQH--DINHLVDMLVAEAKSGDQILV-MSNG-GFDGI 441

Query: 459 --RLINLLLEEF 468
             +L+  L + +
Sbjct: 442 HSKLLEKLTKRY 453


>gi|210616990|ref|ZP_03291325.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
 gi|210149513|gb|EEA80522.1| hypothetical protein CLONEX_03547 [Clostridium nexile DSM 1787]
          Length = 458

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/389 (16%), Positives = 130/389 (33%), Gaps = 46/389 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L          T IA++G+ GKTTT  ML+  L + +K               + 
Sbjct: 101 ELLGQLMTNY-----KTPIAVSGTHGKTTTTSMLSHVLLAGEKDPTISVGGILK---AIG 152

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D  + E       E         P I +I  +   H+  F  I++I ++  +
Sbjct: 153 GNIRVGSSDVFVTEAC-----EYTNSFLHFFPKIGIILNVEEDHMDFFKDIDDIRNSFHQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQS 270
               L   G + +N +      +           I ++ + + AD+   + +       S
Sbjct: 208 FAALLPADGALVINQNIEGINSITD----GLDCKIITYSERQPADYSASEIRFDEIGNAS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  ++       +     G H   N L  + +   L   +D   K +  F   + R +  
Sbjct: 264 FDLLRHGEYVDRITLAVAGNHNVSNALAVIAVCEQLEIPLDIIKKGILSFTGTDRRFQY- 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEM 381
                +     I + Y  +P  ++A            +     PH   R  A   +  E 
Sbjct: 323 ---KGERDGVTIIDDYAHHPTEIRATLTSAQNYPHKDIWCIFQPHTYTRTKAFFDEFAE- 378

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
             LS + H+ LA++ +      +   G    AL + +       +Y  + + +  F+   
Sbjct: 379 -ALSLADHVVLADIYAARETDTL---GMSSAALTEKIKELGTDAYYFPSFEEIENFVSEK 434

Query: 441 LVDGDVVVVKSSNSCGFYRLI---NLLLE 466
            + GD +++      G   ++     LL+
Sbjct: 435 CIHGD-LLIT----MGAGDVVNIGEALLK 458


>gi|208779767|ref|ZP_03247111.1| cyanophycin synthetase [Francisella novicida FTG]
 gi|208744222|gb|EDZ90522.1| cyanophycin synthetase [Francisella novicida FTG]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    GR+I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGRKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|77460893|ref|YP_350400.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
 gi|109892724|sp|Q3K745|MURC_PSEPF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77384896|gb|ABA76409.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf0-1]
          Length = 486

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH    +A           V  +   VA+     IPV         +  LA   R R   
Sbjct: 67  GHR-AENAAAADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG- 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++    ++       +     +               + I E  
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEAD 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P +AV+T I   H++ +     ++     E    L   G   +  
Sbjct: 174 ESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +      L  +   ++G S++AD +    +Q   Q++  V    +    V   
Sbjct: 229 DDPVVREILP----LVKRPTVTYGFSEDADVRAINVRQQGMQTFFTVLRPDREPLDVSVN 284

Query: 288 IGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           +  +      +  + I +      +  ++ LS F     R + Y      G   ++ + Y
Sbjct: 285 MPGNHNVLNSLATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I  +    P        V+         ++  + D   VL+  N+     
Sbjct: 345 GHHPTEVAAVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVNVLADANVLLLME 400

Query: 404 VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G           L +++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPLVKPLLRAGDILL 453


>gi|315658530|ref|ZP_07911402.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
 gi|315496859|gb|EFU85182.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Staphylococcus
           lugdunensis M23590]
          Length = 449

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 33/291 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            ++ I EL    L  I       RPHIA+IT I  AHL     +E   +AK +I++    
Sbjct: 160 DEYLITELSSFQLLGIDKY----RPHIAIITNIYSAHLDYHGTLENYQNAKKQIYKNQTA 215

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  NY       L            +S  +  +  +    +        + +     
Sbjct: 216 DDYLICNYHQ---RHLIESEQLKAKTLYFSTQQEVDGIYIKDNFIIYKGVRIINIDDLVL 272

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             E     I   +  ++L  + + +I+ +    +           G   R +        
Sbjct: 273 PGEHNLENILAAVLASLLAGVPVKAIIDSLTTFS-----------GIEHRLQYIGTNRTN 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   N  + + A++  +Q      G            G    +   +L   +   
Sbjct: 322 KYYNDSKATNTLATQFALNSFNQPIIWLCG------------GLDRGNDFDELIPYMK-- 367

Query: 400 NISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G            +  +V  +  +      +Q  +   DVV++
Sbjct: 368 HVRIMVVFGETQEKFVKLGTSQGKYVIKATDVTDAVDKVQDVIEPNDVVLL 418


>gi|229514032|ref|ZP_04403494.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
 gi|229349213|gb|EEO14170.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           TMA 21]
          Length = 467

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 123/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 127 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 178

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 179 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 235 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 280

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 281 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 341 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 390

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I++ L  GD+V++
Sbjct: 391 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRTQLKSGDMVLL 439


>gi|294338819|emb|CAZ87153.1| UDP-N-acetylmuramate--L-alanine ligase
           (UDP-N-acetylmuramoyl-L-alanine synthetase) [Thiomonas
           sp. 3As]
          Length = 469

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 136/429 (31%), Gaps = 49/429 (11%)

Query: 44  FAIKGPHYDGHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLA 99
            AI      GHD         A      V  +   V +  +  IPV         +  LA
Sbjct: 53  VAI------GHD-AAQVQDADALVVSTAVRADNPEVLAARARHIPVV----PRAVM--LA 99

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              RL+     IAI G+ GKTTT  ++   L+        +     +           V+
Sbjct: 100 ELMRLKRG---IAIAGTHGKTTTTSLVASVLAEGGLDPTFVIGGRLN--------SAGVN 148

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL-E 218
              G  E  +    E       + P +AV+T I   H+  +             F     
Sbjct: 149 AKLGQGEYIVVEADESDASFLNLLPVMAVVTNIDADHMDTYGHDPARLRHAFVDFIARLP 208

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   L  DD+    +            ++      A     +  Q          +Q 
Sbjct: 209 FYGAAVLCVDDAAVRGIMPFVSKPITSYGFAEDAQVRAIDVRAEGAQMHFTVLRRNGVQL 268

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQG 337
             + V  +  G H  QN L  + + + L  D     +AL+ F     R +RY   A + G
Sbjct: 269 PPLAVTLNLPGRHNVQNALAAIAVATELNVDDAAIQRALAGFTGVGRRFQRYGEVAAHHG 328

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               + + Y  +P  M A ++      P        VL         ++    D  +VL 
Sbjct: 329 GHFTLIDDYGHHPVEMAATLAAARGAFPGR----RLVLAFQPHRYTRTRDLFEDFVKVLG 384

Query: 398 LYN---ISHVWLSGFHVLALKDA--LPRSIHV------HYSETMDGLFLFIQSSLVDGDV 446
             +   ++ V+ +G   L   D   L R++ V       + E +  L   I     +GD 
Sbjct: 385 EADAVLLAEVYSAGEAPLVAADGRSLARAVRVAGKTEPVFVEAVADLPQAILEMAREGD- 443

Query: 447 VVVK---SS 452
           V++     S
Sbjct: 444 VLICMGAGS 452


>gi|292489356|ref|YP_003532243.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|292898420|ref|YP_003537789.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291198268|emb|CBJ45374.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia amylovora ATCC
           49946]
 gi|291554790|emb|CBA22612.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora CFBP1430]
 gi|312173521|emb|CBX81775.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Erwinia amylovora ATCC BAA-2158]
          Length = 491

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 129/399 (32%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEVVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +A++T
Sbjct: 142 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   L  DD+    L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQ-CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q  ++  +  V+     M+V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVENYQQLGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + +  + AL  F     R                   ++ + Y  +P  +   I      
Sbjct: 310 EDEDILNALESFQGTGRRFDFLGEYPLAPVNGSAGTAMLVDDYGHHPTEVDVTIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          AL
Sbjct: 370 WPDKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGESPIAGADSRAL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V        D +   +   L   D+++V+ 
Sbjct: 426 CRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQG 464


>gi|227082526|ref|YP_002811077.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229507535|ref|ZP_04397040.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229512269|ref|ZP_04401748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229519405|ref|ZP_04408848.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229607041|ref|YP_002877689.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae MJ-1236]
 gi|9656976|gb|AAF95546.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|227010414|gb|ACP06626.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           M66-2]
 gi|229344094|gb|EEO09069.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC9]
 gi|229352234|gb|EEO17175.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|229355040|gb|EEO19961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae BX
           330286]
 gi|229369696|gb|ACQ60119.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           MJ-1236]
          Length = 467

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/353 (16%), Positives = 122/353 (34%), Gaps = 40/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L           +IAITGS GK+T  ++  +  ++         +   +IGVP     +
Sbjct: 127 ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLANAAGV----KAAVGGNIGVPALDL-I 178

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             DV+  + EL    L      T  ++   A    ++  H+  + G+E+   AK  IF+ 
Sbjct: 179 SPDVELYVLELSSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            E                +             +  +      +       ++    E   
Sbjct: 235 AET--------------AVVNADDTQTFPDHAAHLQVVTFGVEQAAQFSLAQHQGREYLF 280

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +    +      N+   L ++++L +       AL       G   R +   + 
Sbjct: 281 ARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSYTGLTHRCQVVADN 340

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L       EG+   ++G + +  + +      LA VL
Sbjct: 341 HGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP-----LAPVL 390

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      + ++M+ +   I+  L  GD+V++
Sbjct: 391 ATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMVLL 439


>gi|330443875|ref|YP_004376861.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
 gi|328806985|gb|AEB41158.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydophila
           pecorum E58]
          Length = 419

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 91/343 (26%), Gaps = 56/343 (16%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   I +TGS GKTTT   LT    ++  +         +IG P+   +    +      
Sbjct: 100 QYPSIGVTGSNGKTTTVSFLTHLFHTLGLS----AVSMGNIGTPILELQGVSGIRVV--- 152

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
             +S    +     +     A +  +   HL     ++    AK+ I   ++   T+++ 
Sbjct: 153 -EISSFQLVDQEERIPVFSSAALLNVCQNHLDYHDTMDAYMMAKSHIANYVQDPQTLWVG 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              S  +  +A           +             +                       
Sbjct: 212 EGISLGKPYRAYFEETQEILDKASALKPIYLHDRSNY----------------------- 248

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                                         L      +    R      +      ++S 
Sbjct: 249 ------------CAAYALAKEVCHVPLEGFLLAIQTFKKPPHRIEYLGKKHNVHYYNDSK 296

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                ++K A+  L         + I +LG   + G+ S          +      HV  
Sbjct: 297 ATTVEAVKQALIAL-------GSKVIVILGGRNKGGDFSA------LSFVLSQTAKHVIA 343

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     +  A+   + V  +  ++      Q+    GD +++
Sbjct: 344 MGECREEIVQAVAGVVPVCMAHKLEEAIEIAQALASAGDSILL 386


>gi|295098595|emb|CBK87685.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 491

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 128/401 (31%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  +KQ   +  +   +     + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYKQIGAQGHFTLARQDKDLLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D +  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKPGSAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-----VWLSGF------HVL 412
            P        V+         ++  + D A VLS   +       V+ +G          
Sbjct: 370 WPEKN----LVMIFQPHRYTRTRDLYDDFANVLSQ--VDTLLMLDVYAAGETPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     V          +   +   L   D+++++ 
Sbjct: 424 SLCRTIRGRGKVDPILVPDPAQVAEMLAPVLTGNDLILIQG 464


>gi|330895233|gb|EGH27571.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 297

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 90/279 (32%), Gaps = 25/279 (8%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV+T ++  HL     +E  A+AKA++           +N DD F   L A      
Sbjct: 1   FDVAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWPDLKCRVINLDDDFGRELAAVKQESR 59

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           + T         A    R  K   +     +        +    +G     N+L  +G +
Sbjct: 60  LITY--SQLDSTAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLAAVGAL 117

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L   +D  +KAL       GR +R   A           + +A          VL  +
Sbjct: 118 LGLDYALDEILKALPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEAL 170

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
            PH +GR + + G     G         L   +       VW++  +            +
Sbjct: 171 RPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPVSIFDDI 226

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +     +  V + E        + +S    DVVV+  K 
Sbjct: 227 RPGFVAADKVRFIEGRGQAIAELIASANANDVVVLAGKG 265


>gi|254369189|ref|ZP_04985201.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122139|gb|EDO66279.1| hypothetical protein FTAG_00136 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 109/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +        +   +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPVAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|152993861|ref|YP_001359582.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
 gi|151425722|dbj|BAF73225.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Sulfurovum sp. NBC37-1]
          Length = 432

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/412 (12%), Positives = 114/412 (27%), Gaps = 65/412 (15%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           + + +        S P     D L A   L           ++ +TG+ GKTT    +  
Sbjct: 28  LTSQNRPYYEKLESKPASITPDELIAFWGLDAM-------KVVGVTGTNGKTTVTAAIYS 80

Query: 129 ALSSIKKTYACIGSY-----------------NNHIGVPLTLARMPVDVDFGIFELGMSH 171
            L  + K  A  G+                  +    +      M +  ++ I E+  S 
Sbjct: 81  FLLDLDKKPALQGTRGLFAEEKRIEEKSMTTPSILETLHNMKQTMDMGCNYFIMEV--SS 138

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
               +     +   + V T +   HL     +EE    K+            F +     
Sbjct: 139 HAIDQKRIEGITFALKVHTNVTSDHLDYHGTVEEYRRVKSLF----------FADDTMKL 188

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                  +     K  YS+G  + A ++++ +      +     +Q ++         ++
Sbjct: 189 LNKDDINNITYNPKNAYSYGVDEPATYKVQAFSLLHGITAGIKYMQEEATFHSPMMGLFN 248

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANP 350
           +   M     +  +    +      +  F    GR +   R  L    F    +  +A  
Sbjct: 249 LFNLMAAIGSVHLLTKRPIQEICDVVENFAGVAGRMEVVSRDPLVIVDFAHTHDGIHAVL 308

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            SM              +     V G     G         L    +    + ++++  +
Sbjct: 309 ESM-------------KDRDISVVFGA----GGNRDKEKRPLMGAAAGRYANKIYVTSDN 351

Query: 411 VL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L    +V  +            +L   +V+++  K 
Sbjct: 352 PRDEVPEMILEDILVGLHGKENVTATPDRRLAIKMALEALEPNEVLLILGKG 403


>gi|157827094|ref|YP_001496158.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
 gi|166224722|sp|A8GW94|MURC_RICB8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157802398|gb|ABV79121.1| UDP-N-acetylmuramate--L-alanine ligase [Rickettsia bellii OSU
           85-389]
          Length = 478

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 122/410 (29%), Gaps = 51/410 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +  A+ +       N   V       IP+        A   LA   RL+     +A++GS
Sbjct: 78  VSSAINR-------NNPEVKEALERKIPII-----RRA-EMLAELMRLKCS---VAVSGS 121

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++     +       I     +     +        ++ I E   S      
Sbjct: 122 HGKTTTTSLVACLFEAAGLHPTVINGGIINN---RSTNAYLGSSNYLIAEADES-----D 173

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                +   IA+IT I P HL  +   + + +A       L   G      D      L 
Sbjct: 174 ATFISIPSTIAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVRELV 233

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKW-----KQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                  + T        +                 + S   V       ++     G H
Sbjct: 234 NNITERKVITYGIDSDDAHITAFNISTDITSSTFDVKISLPNVSGVTIIEKITIPTPGRH 293

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N L  + +   L   +       + F   + R       + +     + + Y  +P 
Sbjct: 294 NILNSLAAISVGVELDFGIKAIKNGFNSFKGVKRRFT----KVAEYNQASVIDDYAHHPE 349

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-----DLAEVLSLYNISHVWL 406
            +KA +S    I+    G+ IA+     +    S+  H+        +   L  I+ V+ 
Sbjct: 350 EIKATLSTAKNIANKQHGKVIAIF----QPHRYSRMQHLFDDFMRCFDDADLLYITDVYA 405

Query: 407 SGF-HVLALKD--------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +G  H+  +           L      ++   +D     I +    GD++
Sbjct: 406 AGESHIEGISGQSLIDNIIKLKYHNQANFLAKLDDSLEVIMNKASPGDMI 455


>gi|172037288|ref|YP_001803789.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|254765994|sp|B1WQL2|MURC_CYAA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171698742|gb|ACB51723.1| UDP-N-acetylmuramate-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 518

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 131/415 (31%), Gaps = 45/415 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N    A+      P+F   DVL AL +             IA+ G+ GKTTT  +
Sbjct: 118 TAIAHNNSEYAAAKEKGCPIFHRSDVLAALIR---------DYQSIAVAGTHGKTTTSSL 168

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         I             AR+     + + E   S     +       P+
Sbjct: 169 IGYMLLKADLDPTIIVGGEVDA--WEGNARIGAKGGYLVAEADESDGSLTKHY-----PN 221

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I ++T I   H  ++  ++++           +                    +  L   
Sbjct: 222 IGIVTNIELDHPDHYQTLDDVVKTFQIFETQCDLLIGCLDCETV---------ASELTPA 272

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             YS   SK AD+ ++      + ++    +      E+     G H   N L  + +  
Sbjct: 273 ITYSLDPSKGADYTVQNVTSNHKGTFAEVWERGNYLGEIRLTIPGSHNLSNALAAIAVGR 332

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  +      AL  F   + R             T ID+   A+  S   A    ++  
Sbjct: 333 KLGLNFAVIADALFTFAGAKRRF---EQRGQCNGITFIDDY--AHHPSEIEATLSAARSK 387

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISHVWLSGF------HVLALK 415
             GE     V          + +F  + A   +   L  ++ ++ +G           L 
Sbjct: 388 VDGETISRVVAIFQPHRYSRTATFLKEFATCFKDADLVILTDIYSAGEVNLHNISGQDLA 447

Query: 416 DALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEF 468
           +A+  +   V Y  ++ GL   I   +  GD+V+       G   ++I  ++  +
Sbjct: 448 EAVENNHSQVIYEPSLKGLPQVIPDLIKPGDLVLF---LGAGNLNQIIPEMINTY 499


>gi|152967145|ref|YP_001362929.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
 gi|151361662|gb|ABS04665.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kineococcus
           radiotolerans SRS30216]
          Length = 533

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/433 (14%), Positives = 121/433 (27%), Gaps = 54/433 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIA 129
           + D++       +PV+G  DV     +LA   R  + A   + +TG+ GKTT  EM    
Sbjct: 118 DADLLVGAARAGVPVWG--DV-----ELAWRMRPETGAAPWLTLTGTNGKTTVVEMTAEI 170

Query: 130 LSSIKKTYACIGSYNNHIGVP-LTLARMPVDVDFGIFELGMSHLGEIRFLTHLV-RPHIA 187
           L +         +   ++G P +   R P   +    EL    L  +        RP  +
Sbjct: 171 LRAAGLR----ATSAGNVGTPLVEALRHPHGFEVLAVELSSYQLHWLSTDVESSVRPLAS 226

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD--------SFFELLKAKS 239
            +  +AP HL     +E  A AK  I++  E      +               E  +A  
Sbjct: 227 AVLNLAPDHLDWHGSMEAYALAKGRIYQNTEVACVYNVGDPRTEDLVREADVVEGARAIG 286

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
               +  +   G  ++         +  + +     L     E     +  H  +N+L  
Sbjct: 287 FTRAVPGLSMLGLVEDVLCDRAFVAERRDNAAELCSLADLRPEGSDDPVAPHTVENVLAA 346

Query: 300 LGIVSILTADVDTAIKALSVFHP-KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
             +              +  F P           +        +D+S   N  +  A+++
Sbjct: 347 AALARAAGVPQIAVRDGVRAFRPAPHRVATVAAPSAATAQVRWVDDSKATNAHAANASLA 406

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA- 417
               +     G             +     H        L       ++        D  
Sbjct: 407 TFEHVVWIAGGDAK------GATFDDLVQAHRGRLRGAVLIGADRALVAEALRRHAPDVP 460

Query: 418 ---------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                          + ++  MD +          GD V++    +S             
Sbjct: 461 VVEVELPQTAEVGAPLDHALLMDTVVARAAELARPGDTVLLAPACASWDQFRSYGHRG-- 518

Query: 457 FYRLINLLLEEFP 469
                  ++  FP
Sbjct: 519 -DEFAAAVVRRFP 530


>gi|332976299|gb|EGK13157.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Desmospora sp.
           8437]
          Length = 386

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/373 (17%), Positives = 116/373 (31%), Gaps = 44/373 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIF 165
           +A++I ITGS GKTTT  ++   L+              +IG+ L+     +D + + I 
Sbjct: 43  EASMIGITGSNGKTTTTSLVGRMLA----RGGIPARVAGNIGMALSEVAPGMDQEEWLIS 98

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L      T   RP I  +  + PAHL     +E+   +K ++F   +      L
Sbjct: 99  ELSSFQL----KGTRQFRPRIGALLNLVPAHLDYHGSMEDYLESKGKLFANQQPGDIAVL 154

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D      L  +        ++ F + +  D +    KQ    + +    +   +    
Sbjct: 155 NRDSDVCRRLAPQLRGD----VWWFSRQEPVD-RGLMVKQGWVTARLPDGEELSLLPASQ 209

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +     +N L    I        D   + L  F   E R                ++S
Sbjct: 210 VRLPGIHMENALAASAIALAAGCPADALREELRTFTGVEHRL---EFVATVDGVRYYNDS 266

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +  +A+   ++      G            G        +L  V     +  + 
Sbjct: 267 KATNGKAATSAMESFTEPIVLIAG------------GLDRGVDFRELVPVFQKR-LKGIV 313

Query: 406 LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV---KSS-------- 452
             G     L      +       +E +             GDVV++    +S        
Sbjct: 314 TYGEAGDVLLKRAEEASVPLRERAEEIADAVTRASRLAAAGDVVLLSPACASWDLYTSFE 373

Query: 453 -NSCGFYRLINLL 464
                F + ++ L
Sbjct: 374 ERGSIFKQAVHNL 386


>gi|304312310|ref|YP_003811908.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
 gi|301798043|emb|CBL46265.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (Murein peptide ligase) [gamma proteobacterium
           HdN1]
          Length = 468

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/373 (13%), Positives = 97/373 (26%), Gaps = 33/373 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLT--LARMPVDVDFGIFE 166
           ++ + G+ GKTTT  M+   L          IG   ++ G+           +  F + E
Sbjct: 105 VVGVAGTHGKTTTSSMVAWILEHAGLCPGFLIGGIPSNFGISARLGGKEGVAEPTFFVVE 164

Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S   + R      +P  A++  +   H   F  +  I      +   +   G I 
Sbjct: 165 ADEYDSAFFDKRSKFIHYQPRTAILNNLEFDHADIFDDLAAIQRQFHHLVRTIPGQGRII 224

Query: 225 LNYDDSFFELLKAKSHALGIKTI---YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           L   D   + +  K     ++      S G                     + +++    
Sbjct: 225 LPASDENLKEVLKKGCWTPVEEFGAGASAGWQAELLEPGGSHFAVYLSGERQGEVRWSMT 284

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +                  + S     +     A                       T 
Sbjct: 285 GMHSVNNALAALAAARHCGVLPSDGIRALCEFEGARRRMELVGEVQGVRVFDDFAHHPTA 344

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I  +      ++     + + I P     R+ V              H  L    S    
Sbjct: 345 IATTLEGLRGNV-GDARIFAVIEPRSNTMRMGV--------------HQSLLAP-STAAA 388

Query: 402 SHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V      G +           +     ++++ +   I      GD VV+  SN  GF 
Sbjct: 389 DQVIWYQPPGLNWQLDGVIAASPVPARVEQSIEAIIADIVREARSGDQVVI-MSNG-GFG 446

Query: 459 ----RLINLLLEE 467
               +L+  L E 
Sbjct: 447 GIHAKLVAALRER 459


>gi|291277616|ref|YP_003517388.1| hypothetical protein HMU14130 [Helicobacter mustelae 12198]
 gi|290964810|emb|CBG40666.1| putative hypothetical protein Cj0837c [Helicobacter mustelae 12198]
          Length = 333

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGL 67
           + +++ +QG           +GIS    ++   + FFA    +      I  A+  GA  
Sbjct: 2   NQMIELMQGKLHNAPAIDAFSGISFALNALKKGDLFFA---KNI---QEIDAAIAMGAYG 55

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           +V +  ++  I  + I    V ++  A+++L     L  K 
Sbjct: 56  IVYDQSVL--INDVEIAWIEVKNIEEAISRLLRYFLLSKKI 94


>gi|259418779|ref|ZP_05742696.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
 gi|259345001|gb|EEW56855.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Silicibacter sp.
           TrichCH4B]
          Length = 472

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/404 (15%), Positives = 121/404 (29%), Gaps = 42/404 (10%)

Query: 62  QKGA----GLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRSK- 107
           ++GA      ++V+  +       + PV          VD D+      +A +       
Sbjct: 60  KQGAFEGISALIVSPGIPHLYPKPN-PVVRAALSAGVPVDNDIGLFFRSVATSEWDEFDT 118

Query: 108 -ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +IA+TGS GK+TT  +L   L  + +          +IG  +     PVD    + E
Sbjct: 119 PPKVIAVTGSNGKSTTVALLHHILEHVGRN----SQMAGNIGRGVLDIDPPVDGGVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L        R LT    P +AV T + P HL   +G+    +AK  +F        +   
Sbjct: 175 LSSYQTDLARALT----PDVAVFTNLTPDHLDRHAGMGGYFAAKRRLFAEGGPDRAVIGI 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +D    L    S   G   +      +             +    E +   ++  +   
Sbjct: 231 DEDEGLFLAGQMSEGNGDDRVIRVSSGQKLSGSAGWSVFARKGFLSEYRKGRQAGSIDLR 290

Query: 287 GIGYHMAQNMLM-TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            I      +         +             +      G   R +        + +++S
Sbjct: 291 DIPGLPGAHNHQNACAAYAAARTLGLAPRVIEAAMKTYPGLPHRSQRVAQANGVSYVNDS 350

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S   A+S   +I     G          E G  +           +   +   +
Sbjct: 351 KATNVDSAAKALSAFKKIRWICGGLE-------KEGGLEALKG--------ATGEVLKAY 395

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G        A+  ++      TM        +   +G+ V++
Sbjct: 396 VIGREAAQF--AMQLNVDAEVCTTMAAAVECAMADAGEGETVLL 437


>gi|220933947|ref|YP_002512846.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
 gi|219995257|gb|ACL71859.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thioalkalivibrio
           sp. HL-EbGR7]
          Length = 442

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 119/357 (33%), Gaps = 35/357 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  + + AR   +A ++AITGS GK+T   ++     +         +   + G+P  
Sbjct: 92  EILGDIELFAREA-RAPVVAITGSNGKSTVTALVGEMARAAGLNV----AVGGNFGIPAL 146

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 DV+  + EL    L     L     P  A +  I+  HL  +  +E+ A+AK  
Sbjct: 147 DLLNDADVELYVLELSSFQLETTESLA----PVAATVLNISADHLDRYESLEDYAAAKER 202

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           IF   E      +N DD     +       G     SFG     +      ++ +E  W+
Sbjct: 203 IFRRTETA---VINRDDPRVWSMA------GGARRVSFGLDVPGEGDWGLVERDAE-PWL 252

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                    E      G H   N L  L +        +  ++AL+ F     R    + 
Sbjct: 253 AQGEIPWFAESRLRIAGRHNTANALAALALGQAAGLPGEAMVEALTQFSGLPHRC---QW 309

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                  +  ++S   N  +  AA+           G+ + + G     G+        L
Sbjct: 310 VTRLHGVSWYNDSKGTNLGATLAALEGF-------PGQVVLIAG-----GQGKGQDFAPL 357

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            + +       V L G     +  AL   + V    +M+            GD V++
Sbjct: 358 GDAVV-GKARAVVLLGEDAPHIATALDGRVPVVSVASMEAAVAEAARLAQSGDSVLL 413


>gi|332678416|gb|AEE87545.1| Cyanophycin synthase [Francisella cf. novicida Fx1]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    GR+I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGRKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|315655251|ref|ZP_07908152.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii ATCC 51333]
 gi|315490506|gb|EFU80130.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii ATCC 51333]
          Length = 495

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 73/441 (16%), Positives = 134/441 (30%), Gaps = 59/441 (13%)

Query: 58  LHAVQKGAGLVVVN-----TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATII 111
             A  KG  L +V+      + +  +   S P++  V+     L               +
Sbjct: 68  EAAAAKGHKLFIVSPGIAPHNPLYRLPEASAPMWSEVE-----LAWQIQEVIGNRNCKWL 122

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITG+ GKTTT  ML   L +       + +   + G P+        VD    EL  + 
Sbjct: 123 CITGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVAAEGAVDALAVELSSAQ 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---------GT 222
           L      T+ ++P  +V    AP H+      +E A  K++++ G++            T
Sbjct: 179 LH----STYSLKPWASVWLNFAPDHIDWHGSADEYAWDKSKVYCGVQHAALYPATEELPT 234

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L+      +   A+        I + G     +  +             ++L   +  
Sbjct: 235 KVLSKRFVQEQGFPAEKCIGLTPGIPAPGFLGVIEDVIVDRAFGENNETQALELATFADL 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               G     +  +  TL    +  A     +         E    R       G  T I
Sbjct: 295 EHLSGAKTPTSALLADTLAAAGLARAYGLQPVWVRRGIREFELANHRRAVVGTFGGVTYI 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  A++  ++      +     V GD        Q FH  +        + 
Sbjct: 355 DDSKATNTHAAAASLRDIAD-----KRAVWIVGGD-----AKGQDFHSLV--QAVAPKVK 402

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV---KSS 452
              L G      + A   +      +        M+      ++  V GD V++    +S
Sbjct: 403 AAVLIGLDPEPFESAFAENGAGIPVKRVAPGDNLMERTLNEARALAVPGDTVLLAPACAS 462

Query: 453 ---------NSCGFYRLINLL 464
                        F ++   L
Sbjct: 463 WDQFNNYHERGDQFAQVARRL 483


>gi|160932699|ref|ZP_02080088.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
 gi|156867773|gb|EDO61145.1| hypothetical protein CLOLEP_01540 [Clostridium leptum DSM 753]
          Length = 473

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 101/345 (29%), Gaps = 29/345 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A++G+ GKTTT  MLT  L    K    I               +  +   G  E+ + 
Sbjct: 124 VAVSGTHGKTTTTAMLTQILVQSGKDPTAIIGGKLPF--------LGGNSRVGSSEIMVC 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P +++I  I   HL  F  +  I  +  +      K   +  +  + 
Sbjct: 176 EACEYVDTFLQLTPAVSIILNIDADHLDYFKDLNNIIKSFHQFALQTTKRLVVNGDDAN- 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  K+ A       +FG     D+      +          +              
Sbjct: 235 -----TQKAIAGVSLPAVTFGMKDTNDYYAGSIAEKKGVCEEFSLMYRGEKLAEIVLSVP 289

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                        +  T  V     A S+        +        G     D +++   
Sbjct: 290 GEHNIYNALAAAAAAHTLGVSPEDIAKSLHAFTGVHRRFEVLGNPSGIMVADDFAHHPTE 349

Query: 351 ASM-------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            S            +V +   PH   R   +L D  +   +     +     +   N  H
Sbjct: 350 LSATLTAAMKMGFHTVWAVFQPHTYSRTALLLEDFAKALSIPDRVVMSEILPVREVNTYH 409

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++        L D +P S+   + +T + +  ++ +    GD+++
Sbjct: 410 IYT-----KDLADKIPGSV---WFDTFEEITDYVTAHAEPGDLIL 446


>gi|118497702|ref|YP_898752.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           U112]
 gi|194323674|ref|ZP_03057450.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
 gi|118423608|gb|ABK89998.1| cyanophycin synthetase [Francisella novicida U112]
 gi|194322038|gb|EDX19520.1| cyanophycin synthetase [Francisella tularensis subsp. novicida FTE]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    GR+I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGRKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|121595960|ref|YP_987856.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|222112148|ref|YP_002554412.1| UDP-N-acetylmuramate--l-alanine ligase [Acidovorax ebreus TPSY]
 gi|166222950|sp|A1WC05|MURC_ACISJ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765998|sp|B9MFR1|MURC_DIAST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120608040|gb|ABM43780.1| UDP-N-acetylmuramate--L-alanine ligase [Acidovorax sp. JS42]
 gi|221731592|gb|ACM34412.1| UDP-N-acetylmuramate/alanine ligase [Acidovorax ebreus TPSY]
          Length = 477

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 78/416 (18%), Positives = 135/416 (32%), Gaps = 36/416 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   V +     IPV         +  L    RLR     IAI G+ GKTTT  +
Sbjct: 72  TAVQADNPEVLAARERKIPVV----PRALM--LTELMRLR---KGIAIAGAHGKTTTTSL 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         +     +            +   G  E  +    E       + P 
Sbjct: 123 VASVLGEAGLDPTFVIGGRLN--------SAGTNAKLGQGEYIVVEADESDGSFLNLLPV 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H+  +             F   +   GT  L  D+     +         
Sbjct: 175 MAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCIDNPAVRDILPLVTCPVT 234

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
               S      A        Q          +    ++VV +  G H   N L  + + +
Sbjct: 235 SYGLSEDAEVRAVDVRAVGTQMHFTVQRRNGVTLPDLQVVLNLAGEHNVLNALAVIAVAA 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF-FTLIDESYNANPASMKAAISVLSQI 363
            L    D  ++AL+ F     R +R+     QG     + E Y  +P  M A ++     
Sbjct: 295 ELNVPDDALLRALAGFTGVGRRFQRHGDLPAQGGGHFTLIEDYGHHPVEMAATLAAARGA 354

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVLALKDA--L 418
            P        VL         ++    D  +VL   +   ++ V+ +G   +   D   L
Sbjct: 355 YPGR----RLVLAFQPHRYSRTRDCFEDFVKVLGTADAVLLTEVYAAGEAPIVAADGRSL 410

Query: 419 PRSIHV------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLLLE 466
            R++ V       + + +  +   I +   DGDVV+   + S G    ++++LL +
Sbjct: 411 ARALRVAGTVEPVFIDNVADMPQRIAAGARDGDVVLCMGAGSIGGVPAKVVDLLQK 466


>gi|124268381|ref|YP_001022385.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Methylibium petroleiphilum PM1]
 gi|124261156|gb|ABM96150.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Methylibium petroleiphilum PM1]
          Length = 449

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 107/375 (28%), Gaps = 26/375 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA- 154
             LA          ++A+ G+ GKTTT  ML   L + ++            GVP     
Sbjct: 93  QWLAEHVLQ--GRHVLAVAGTHGKTTTTSMLAWILENNERRP-----GFLVGGVPQNFEV 145

Query: 155 -RMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                +    + E                  RP  AV+  +   H   F+ +  I +   
Sbjct: 146 SARLGEGQPFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAIETQFH 205

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   +  +G + +N  +     +  +     ++     G       +         +S 
Sbjct: 206 HLLRTVPASGRVIVNAREESLARVLERGCWSDVQRFGVRGDVPGFRARGEPHSFDVLKSG 265

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++V     ++   H+ +    A      +G+     A        +       G  +  +
Sbjct: 266 VQVGRVEWALLGEHNQLNALAAIAAAEHVGVAPADAARALAGFANVKRRLELRGEVRGIK 325

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
              +         +             +L+   P     +   LG M             
Sbjct: 326 VYDDFAHHPTAMRTTIDGLRRRIGEQRILAVFEPRSNTMK---LGAMK----------AQ 372

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   L   +++     G    A +   P        +++D L   +  +   GD V+   
Sbjct: 373 LPWALEEADLAFCHSGGLGWNAGEALAPLGDRAVVGDSIDALVQRVVQAARSGDHVL-CM 431

Query: 452 SNSCGFYRLINLLLE 466
           SN   F  + + LL 
Sbjct: 432 SNGS-FGGIHDKLLA 445


>gi|313893638|ref|ZP_07827206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441782|gb|EFR60206.1| UDP-N-acetylmuramate--L-alanine ligase [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 460

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 63/419 (15%), Positives = 132/419 (31%), Gaps = 51/419 (12%)

Query: 48  GPHYD-GHD--FILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKL 98
           G     GH+  ++      G   VV +T +      +       I +    D++ A+  +
Sbjct: 50  GATVHIGHNKEYV-----NGVDAVVRSTAIREDNPEIVAAKEQGITILHRSDIVKAVLDV 104

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
                       IA+ G+ GKT+T  M+   L         I          L  +    
Sbjct: 105 TDG---------IAVAGAHGKTSTTSMIGQILVEADADPTVIIGGEVDY---LKGSSCLG 152

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
              F + E   S           +RPH  VIT I   H+ ++  ++ + +A  E  E L 
Sbjct: 153 KGHFSVVEADES-----DGSFLKLRPHTIVITNIEDDHMDHYKTMDNLLNAFCEFVETLP 207

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G   +  D+     +  +      +   ++G   + D+  +           ++  +G
Sbjct: 208 ENGKAIVCGDNESIRYVMNRV----KRNFITYGLDDSNDYVAKNIHYVDSTLVYDIYHKG 263

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            ++E V   +         +   IV+     V+  +    +      + +          
Sbjct: 264 INIERVRLRVPGDHNVLNSLAAFIVAHDCCGVEARVITKGLGKFIGAKRRFE--TKGHVA 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  +KA +    ++  H                 L +            
Sbjct: 322 GVWVVDDYAHHPTEIKATLKAAKELEKH--RVICVFQPHRFTRTSLLKDEFATAFTSADE 379

Query: 399 YNISHVWLSGFHV----------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             ++ ++ SG              A+K+A      V+Y  ++D L   +   +   D+V
Sbjct: 380 VYMTDIYSSGEDPIPGIDGTTIPNAIKEA--TGQDVNYVPSVDDLPEVLAKVVRPNDLV 436


>gi|254374520|ref|ZP_04990001.1| cyanophycin synthetase [Francisella novicida GA99-3548]
 gi|151572239|gb|EDN37893.1| cyanophycin synthetase [Francisella novicida GA99-3548]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    GR+I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGRKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|309783022|ref|ZP_07677741.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
 gi|308918130|gb|EFP63808.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia sp. 5_7_47FAA]
          Length = 483

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 136/405 (33%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E  + L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPGR----RLVLSFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVYAAGEP 402

Query: 411 VLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            +   D  AL R++ V       + E ++ +   I  +  DGDVV
Sbjct: 403 PIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVV 447


>gi|241664306|ref|YP_002982666.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia pickettii 12D]
 gi|240866333|gb|ACS63994.1| UDP-N-acetylmuramate/alanine ligase [Ralstonia pickettii 12D]
          Length = 483

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 79/405 (19%), Positives = 136/405 (33%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E  + L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGLHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG--FFTLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGKGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL       ++ V+ +G  
Sbjct: 347 AATLAAARGAFPGR----RLVLSFQPHRFTRTRDCFEDFIKVLGTVDALLLAEVYAAGEP 402

Query: 411 VLALKD--ALPRSIHV------HYSETMDGLFLFIQSSLVDGDVV 447
            +   D  AL R++ V       + E ++ +   I  +  DGDVV
Sbjct: 403 PIVAADGRALTRALRVANKIEPVFVEQIEDMPQAIIDAAQDGDVV 447


>gi|34556659|ref|NP_906474.1| hypothetical protein WS0216 [Wolinella succinogenes DSM 1740]
 gi|34482373|emb|CAE09374.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 330

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSR--SIAPQEAFFAIKGPHYDGHDFILHAVQ 62
               ++L+ +QG  +        + +S   R  ++   + F A     +  +  I  A+ 
Sbjct: 1   MRVAEVLEIVQGELLNTPSISSFHSLST--RLETLKRGDLFLA----RH--NTLIDEAIH 52

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           KGA  +V +      +    I    VD +  A  +L   
Sbjct: 53  KGAYGIVFS--GQIKMHDHEIAWIRVDSIQEAAIRLIRY 89


>gi|302533953|ref|ZP_07286295.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
 gi|302442848|gb|EFL14664.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp. C]
          Length = 476

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/400 (17%), Positives = 113/400 (28%), Gaps = 51/400 (12%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            V DV     ++A   R    A  +AITG+ GKTTT +ML   L +         +   +
Sbjct: 97  VVGDV-----EIAWQLRGEGAAPWLAITGTNGKTTTTQMLASILRAAGL----KTAAVGN 147

Query: 147 IGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           IG P+       +  D    EL    L         VR H A +  +AP HL     +E 
Sbjct: 148 IGTPIIDVVTGDEQYDVLAVELSSYQLHWA----PSVRAHSAAVLNLAPDHLDWHGSMEA 203

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN-ADFQLRKWK 264
            A+ K  I+EG         N  D   E L  ++          F               
Sbjct: 204 YAADKGRIYEGNTIAC--VYNVADPATERLVEEADVEEGCRAIGFTLGAPGPSMLGVVDG 261

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              +++++  + +          +      N+   L   ++  A                
Sbjct: 262 ILVDRAFVANRQKNAQELAHVDDVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRDFR 321

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R            +D+S   N  + +A+++    +     G            G  
Sbjct: 322 PDAHRVAFVDEVDGVRYVDDSKATNTHAAEASLAAFEPVVWIAGG---------LAKGAT 372

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLF 436
                   A+ L       V L G     + +AL R         ++             
Sbjct: 373 FDELVQKSAKRLR-----GVVLMGADRALIAEALARHAPEVPVTDLERTDTGAMLAAVRE 427

Query: 437 IQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                  GD V++    +S             F   +  L
Sbjct: 428 AARLAEPGDTVLLAPACASMDMFANYNKRGDAFADAVREL 467


>gi|284039597|ref|YP_003389527.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
 gi|283818890|gb|ADB40728.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirosoma linguale
           DSM 74]
          Length = 449

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 110/355 (30%), Gaps = 33/355 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           + A      +KA +I ITGS GKTTT  +    L +             +IG       +
Sbjct: 96  EFAARY---TKARLIGITGSNGKTTTTLLTYHLLKTAGFNV----GLAGNIGDSFAEQVI 148

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFE 215
               D+ + EL    L       +  +  + V+  I P HL  ++   +   ++K  I +
Sbjct: 149 ADTYDYYVLELSSFQLD----DMYKTQLDVMVLLNITPDHLDRYNYEFQNYVASKFRILQ 204

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                 +     ++       AK      K   S   + +    L   +  ++       
Sbjct: 205 NARPADSFIYFAENQPILDELAKRQPDVKKLPISLQSTPSPGGYLADGQLTAKTQTQSFA 264

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           +Q     +           N L  L  +    +   T+    +     +    R   A  
Sbjct: 265 IQQSETPLR-------GPHNALNMLAAILAAQSVGVTSEAIQAGLKTFQNAAHRLEPAGT 317

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  S+  A+S +   +    G            G+   + +  L + 
Sbjct: 318 INGIQFINDSKATNVDSVFYALSSMDTPTIWIAG------------GQDKGNDYSQL-DA 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVVVV 449
           L    +  +   G     L D     + + Y ++ +             GDVV++
Sbjct: 365 LVSQKVKALICLGVDNHKLVDYFGGKVPLIYETQNITDAIAKGLELGQSGDVVLL 419


>gi|77409926|ref|ZP_00786534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
 gi|77171465|gb|EAO74726.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptococcus
           agalactiae COH1]
          Length = 300

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 98/297 (32%), Gaps = 33/297 (11%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +   D D  + EL    L  ++      RPHIAVIT + P HL      E+  +AK  I 
Sbjct: 15  QAADDKDILVMELSSFQLMGVKEF----RPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQ 70

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +  +  + LN++    + L           +      K     ++  +   +      
Sbjct: 71  NQMSSSDFLVLNFNQGISKELAK---TTKATIVPFSTTEKVDGAYVQDKQLFYKG----- 122

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +           G H  +N L T+ +  +         + LS F   + R    +   
Sbjct: 123 --ENIMSVDDIGVPGSHNVENALATIAVAKLAGISNQVIRETLSNFGGVKHRL---QSLG 177

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                +  ++S + N  +          +S     + I + G     G    +   +L  
Sbjct: 178 KVHGISFYNDSKSTNILA------TQKALSGFDNTKVILIAG-----GLDRGNEFDELIP 226

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV 449
            +    + H+ + G     +K A  ++  V YS+   +             GDV+++
Sbjct: 227 DI--TGLKHMVVLGESASRVKRAAQKAG-VTYSDALDVRDAVHKAYEVAQQGDVILL 280


>gi|209693951|ref|YP_002261879.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
 gi|208007902|emb|CAQ78032.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           ligase [Aliivibrio salmonicida LFI1238]
          Length = 453

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 118/369 (31%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L      Y         +G     AR+   + F +     
Sbjct: 105 VLAVAGTHGKTTTSSMLAWVLEE--CGYKPGFLVGGVLGNFGESARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +       RP   V+  +   H   F  +  I      +   +  +G IF    
Sbjct: 163 DSAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLAAIQRQFHHLIRTVPSSGRIFAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         +S  +    + + +  K   + S  +V    +++  V    
Sbjct: 223 DKPLAEVLEQGC-------WSEIEFTGEEGEWKASKLKKDGSQFDVYFNDENVGQV--NW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L +V+       T   A           +R          T+ D+  + 
Sbjct: 274 NLVGDHNVSNALMVVASARHVGVTPDLACEALGSFINTKRRLEFKGEVNGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  G+ + IAVL       ++G    +    L      +    V+
Sbjct: 334 ---PTAIDLTLSGLRNKVGDNKIIAVLEPRSSTMKLGVHKDTLAGSL------HAADSVY 384

Query: 406 LSGFH-VLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L     +    D + +      +    ++     I +   +GD ++V  SN  GF     
Sbjct: 385 LFQPDNISWSVDDVAKQCVQPAYTHHEINAFVDMIVAEAKEGDQILV-MSNG-GFEGIHG 442

Query: 459 RLINLLLEE 467
           +L++ L ++
Sbjct: 443 KLLSALEQK 451


>gi|325478549|gb|EGC81661.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 329

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 95/316 (30%), Gaps = 28/316 (8%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IG  +            + EL    L +I+      +P IA IT I+  H+      ++
Sbjct: 18  NIGEGILWQMATNKDAVFVCELSSFQLHDIK----NYKPKIATITNISEDHIDWHGTFDD 73

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
              +K  I +  ++   I +N++D   +  K+   A   +        +    +      
Sbjct: 74  YIESKINISKNQDEDDYIIINHEDKILQDHKSSYKAKIYEFSSKNEVKRGIFLKDSTIYL 133

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             E+    + +           IG H   N++       +   D+    KAL  F+  E 
Sbjct: 134 KDEKIEKLIDVDD------LLIIGNHNYGNIMAASLCAYLFGIDISDIKKALKTFNSIEH 187

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R              + ++S   N  S   AI   +       G            G   
Sbjct: 188 RL---EYVDTISGVKVYNDSKGTNVDSSVKAIESFNDPIIIIAG------------GYNK 232

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
              +    +         + + G     L +      +    ++ M             G
Sbjct: 233 HIDYSAFVKAFKKKG-KLMVIMGETSDILVNLCKEEGVSYIKAKDMKEAVDISFDHASYG 291

Query: 445 DVVVVK-SSNSCGFYR 459
           DV+++  +S S   Y+
Sbjct: 292 DVILLSPASASWDMYK 307


>gi|305432459|ref|ZP_07401621.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
 gi|304444498|gb|EFM37149.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter coli JV20]
          Length = 427

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/409 (11%), Positives = 108/409 (26%), Gaps = 52/409 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           +F   A++KGA ++ V           +I + G+    G     A    +         +
Sbjct: 31  NFASDALEKGAKIIDVEECKKLLKIDENIKIIGITGTNGKTTTAAAIYSILLDLGFKCGL 90

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ G           ++  +     + +      +           DF I E+  S   
Sbjct: 91  CGTRG---------AFINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEV--SSHA 139

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            ++     ++    + T I   HL      E   +AK   F                F  
Sbjct: 140 LVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTDESLKFINKDTLMIKF-- 197

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                     ++  +++G    + +Q++ +      S +                 +++ 
Sbjct: 198 ---------NVRNAFTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLY 248

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
             +  +  +  ++  ++    KA+S F    GR              ++D ++  +    
Sbjct: 249 NLLAASACVNELVKPNLKDLEKAISGFGGVCGR------VEQVANGVIVDFAHTPDGIE- 301

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
                    +      + I V G     G         L   +  +      ++  +   
Sbjct: 302 -------KVLDTLKNKKLIVVFGA----GGDRDKTKRPLMGKIVEHFAKIAIITSDNPRS 350

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +  +             E                D+VV+  K 
Sbjct: 351 EEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDLVVILGKG 399


>gi|163855000|ref|YP_001629298.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella
           petrii DSM 12804]
 gi|163258728|emb|CAP41027.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bordetella petrii]
          Length = 509

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 105/372 (28%), Gaps = 29/372 (7%)

Query: 93  GALNKLA--VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGV 149
            AL +LA     R R    ++ +TG+ GKTT   +    + +   T    G+     +  
Sbjct: 118 RALAELAESRDYRPR----LLTVTGTNGKTTVTALTRQLVEAGGMTVRAAGNIGPAALAA 173

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +            + EL    L   R L        AV+  +   HL    G++  A A
Sbjct: 174 LIDALDADDLPQVWVLELSSFQLETTRSLMADA----AVVLNVTQDHLDWHGGMDAYAQA 229

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA +    +      +N DD     +     AL    + SFG+           +     
Sbjct: 230 KARLL---KMARVSIVNRDDPRVAGMVE---ALPAMDVRSFGRDLPELVGDMGLELGQGM 283

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +W+         E          A       G +S L       I+            + 
Sbjct: 284 AWLVACEPNDFDEPAPPARRKKDAPPPRRGAGRISRLMPLDALRIRGQHNGLNALAALQL 343

Query: 330 YRCA---LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            R            L + +   + A     I  +  I+        A +  +  +G+   
Sbjct: 344 ARVLNIGWGPMLRALREYTGEPHRAEFVRTIGEVDYINDSKGTNVGATVAALEGLGQPVV 403

Query: 387 SFHIDLAE--------VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFI 437
                L +         +   +   V L G     +   L    +    ++ M       
Sbjct: 404 LIAGGLGKGQDFSPLAPVVTRHARAVVLIGTDGPEIGRVLADTGVPCVAAQDMRDAVRRG 463

Query: 438 QSSLVDGDVVVV 449
                 GD V++
Sbjct: 464 AELAQPGDAVLL 475


>gi|254373068|ref|ZP_04988557.1| cyanophycin synthetase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570795|gb|EDN36449.1| cyanophycin synthetase [Francisella novicida GA99-3549]
          Length = 940

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    GR+I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGRKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|262037265|ref|ZP_06010747.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
 gi|261748737|gb|EEY36094.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           goodfellowii F0264]
          Length = 455

 Score = 49.5 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 131/394 (33%), Gaps = 42/394 (10%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
              +++      +I V    D       LA     + K  +I+ TG+ GKTTT   +   
Sbjct: 61  WKAELLKKAEEKNIKVISEID-------LAYKYMDK-KIKVISFTGTNGKTTTCTKMYEL 112

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L          G+        +         D+ + EL    L         +  +IA I
Sbjct: 113 LEFAGYNVKLAGNAGYSFAKLVGDEEPL---DYIVLELSSYQL----ENDPQIHSYIAGI 165

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFE----------GLEKTGTIFLNYDDSFFELLKAKS 239
             + P HL+ ++ +EE    K +IF+           L+      L   +     +KA+ 
Sbjct: 166 INLTPDHLTRYNSVEEYYITKFDIFQKQNKDDFAVINLDDAEFERLCEREEIQNKIKAEK 225

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
             L  +   +    ++  + ++  K   +    E   +     +    +      N+   
Sbjct: 226 VYLSTEKKGTVFVFEDNIYIMKNLKDRIDCYADEETEKVAEKLISVKDLSLKGKHNLENM 285

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L ++S          K        +    R      +     I++S   N  S   AI  
Sbjct: 286 LFLISGAKILNIPDEKIKEFLKTTKALEHRLENFFVKENTVFINDSKGTNVESTLKAIDS 345

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                   E   I + G     G+  +  + +L + +    +  V+L G +   L++ + 
Sbjct: 346 F-------EKPIILICG-----GDDKKISNDELIKKIKE-KVEFVYLIGDNAPLLEECMD 392

Query: 420 RSIHVHY--SETMDGLFLFIQSSLV--DGDVVVV 449
           +  + +Y   ET++ +  ++ ++       V++ 
Sbjct: 393 KFGYSNYKNMETVENILNYLNNNFDFTRDAVILF 426


>gi|313156845|gb|EFR56285.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Alistipes sp.
           HGB5]
          Length = 449

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 121/380 (31%), Gaps = 36/380 (9%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             +V  + +  IPV          +++  A R   +A  I ITGS GKTTT  ++   + 
Sbjct: 76  APLVRKLRAAGIPVI---------SEIEFAGRYTGRAKCICITGSNGKTTTTSLIYKIMR 126

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                     +   +IG     +    D D+ + EL    L       +  R HI V+  
Sbjct: 127 DAGMRV----ALGGNIGESFAYSVATGDYDWYVLELSSFQLD----GMYKFRAHIGVLMN 178

Query: 192 IAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           I P HL  +    +  A +K  I +          + DD        K   L +K +   
Sbjct: 179 ITPDHLDRYDHCFQNYADSKMRITQNQTSRDYFVYSGDDEVIWQQLPKYD-LRMKQLPFA 237

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K+  A      +    + +    +   +         G H A N +             
Sbjct: 238 AKNAVASGAGDAFLCDCKFTAAVGKASVEIDTAKLQIKGLHNAYNAMAAALATLAAGIAP 297

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
               ++L  F P E R          G    I++S   N  S+  A+  + +      G 
Sbjct: 298 AAIRRSLYGFAPVEHRL---EPVRESGGVLWINDSKATNVDSVYYALESMKRPVVWIAG- 353

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI-HVHYSET 429
                      G    + +  L +      +  +   G     L       +  V  +++
Sbjct: 354 -----------GTDKGNDYGPLKDFARE-KVHTLVCMGIDNAKLLREFTGVVPEVISTDS 401

Query: 430 MDGLFLFIQSSLVDGDVVVV 449
           +D      +++   GD V++
Sbjct: 402 LDAAMTAAKAAARPGDAVLL 421


>gi|260495142|ref|ZP_05815270.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
 gi|260197199|gb|EEW94718.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_33]
          Length = 432

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 72/364 (19%), Positives = 118/364 (32%), Gaps = 49/364 (13%)

Query: 97  KLAVAAR--LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++A       R K  +IAITG+ GK+TT   ++  L+          +Y  +IG  L+  
Sbjct: 78  EIAYNYMMEKRMKTKVIAITGTNGKSTTTAKISDMLNYAGY----KAAYAGNIGRSLSEV 133

Query: 155 RMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     DF   EL    L  I       +P+I++I  + P H+  +   +E    K  I
Sbjct: 134 LLKEKDLDFISLELSSFQLENIE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNI 189

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   +      N DD   E    +  A  I    S  K K AD  +   K C  +  + 
Sbjct: 190 TKNQTEDFYFIENIDDVEIEKRAKQVKAKRI----SVSKFKKADIFVENDKICHGKDSII 245

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +                 N+  TL +V+          K             R    
Sbjct: 246 DVDKLS----------LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF 295

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N G    I++S   N  S K AI           G    V                 LA
Sbjct: 296 FNYGKLKFINDSKATNVDSTKFAIEANKNSILICGGYDKGV-------------DLAPLA 342

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGD 445
           E++   NI  V+L G     ++  L +           V+   ++  +           +
Sbjct: 343 EMIKE-NIKEVYLIGVIADKIESELKKVGYEDSRIHKLVNLENSLQDMKKRFTKD--SDE 399

Query: 446 VVVV 449
           V+++
Sbjct: 400 VILL 403


>gi|259907418|ref|YP_002647774.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963040|emb|CAX54523.1| UDP-N-acetylmuramate-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477251|emb|CAY73164.1| L-alanine adding enzyme,UDP-N-acetyl-muramate:alanine ligase
           [Erwinia pyrifoliae DSM 12163]
          Length = 491

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/398 (17%), Positives = 121/398 (30%), Gaps = 41/398 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEVVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +A++T
Sbjct: 142 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   L  DD+    L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRVGRQITTYGFS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D      +Q ++  +  V+     M+V  +  G H A N    + + +    D
Sbjct: 254 EDADVRVDNYH---QQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENID 310

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL-----NQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + AL  F     R                   ++ + Y  +P  +   I       
Sbjct: 311 DEDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGW 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALK 415
           P        V+         ++  + D A VLS  ++     V+ +G          AL 
Sbjct: 371 PDKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGADSRALC 426

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +     V        D +   +   L   D+++V+ 
Sbjct: 427 RTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQG 464


>gi|117620663|ref|YP_858019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562070|gb|ABK39018.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 456

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 113/370 (30%), Gaps = 34/370 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML                     G     AR+     F + E   
Sbjct: 105 VLAVAGTHGKTTTASMLA--WVLEYAKLEPGFLIGGVPGNFPVSARLG-SAPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPK 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            D     ++       ++           D Q +  K   + S  EV     K  EV   
Sbjct: 222 GDENLAAVRKMGCWSEVE------LVGQDDAQWKAVKLADDGSAFEVWLDGVKQGEVHWE 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG H   N LM +         V+  I AL  F   + R +          +    + +
Sbjct: 276 CIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEVAGISVY----DDF 331

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHV 404
             +P +++   ++    +  G+ R +AVL    E    +     H +            V
Sbjct: 332 AHHPTAIE--TTLGGLRAKVGKARILAVL----EPRSNTMKLGVHKEELAGCFD-GADEV 384

Query: 405 WL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +       G+ +  +   + R         ++ L   + +   DGD +++  SN  GF  
Sbjct: 385 FFFQPPNIGWDLGEVTAHMTR--PAKVFNDLETLINRLVAECRDGDHILI-MSNG-GFGG 440

Query: 460 LINLLLEEFP 469
           + + L+    
Sbjct: 441 IHDKLIARLK 450


>gi|56708207|ref|YP_170103.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110670678|ref|YP_667235.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|187931944|ref|YP_001891929.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|224457311|ref|ZP_03665784.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254370694|ref|ZP_04986699.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875020|ref|ZP_05247730.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604699|emb|CAG45763.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321011|emb|CAL09146.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151568937|gb|EDN34591.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|187712853|gb|ACD31150.1| cyanophycin synthetase [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|254841019|gb|EET19455.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282159425|gb|ADA78816.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 940

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|196230910|ref|ZP_03129771.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
 gi|196225251|gb|EDY19760.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Chthoniobacter
           flavus Ellin428]
          Length = 445

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 97/328 (29%), Gaps = 46/328 (14%)

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P   A++       +  L +S            +   +V    A  HL  +  ++E   A
Sbjct: 149 PAFSAKVNESSHLDVMTLEVSSFQLESIRRFHCQ--TSVWLGFAADHLDRYRSMDEYYVA 206

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  IFE   +     +NY D    L   K           F   +       +      +
Sbjct: 207 KIRIFENQTEDDWAIVNYRDKLPALKAKKITFSAYVPDGDFSLREGVIHFRGERVLAMSE 266

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +      +               N++ TLG+  +        +  L  + P   R + 
Sbjct: 267 TNLRGSHNAE---------------NLMATLGVGFVRGLSFAQMLPPLREYKPLPHRCEI 311

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R          +++S   NP S++ A+   ++      G            G+     +
Sbjct: 312 LRTVNGAE---WVNDSKGTNPDSVEKALHSETRPVVLIAG------------GKDKGFEY 356

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS-ETMDGLFLFIQSSLVDGDVVV 448
             L ++++      V + G     ++      + V  +  +++       ++   GDVV+
Sbjct: 357 DLLTDLVAAR-CRSVVVMGEMADRIEAIWKSRLPVANAGRSLEKAVELAHAAAQPGDVVL 415

Query: 449 VK------------SSNSCGFYRLINLL 464
                         +     F  L+  L
Sbjct: 416 FSPGTSSFDMFKNYADRGNQFRALVQAL 443


>gi|315634759|ref|ZP_07890042.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
 gi|315476517|gb|EFU67266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Aggregatibacter segnis
           ATCC 33393]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 83/320 (25%), Gaps = 29/320 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              + + E                   P   +I  I   H   F  ++ I      +   
Sbjct: 154 KSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIINNIGFDHADIFDDLKAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    ++   +   +          +S  +    D +    +   + +   V  
Sbjct: 214 IPNNGRILSFANEESVQQTLS-------MGCWSECQYVGHDQEWYAERIKHDCTEFAVFH 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  VH  I         +     +           A           KR       
Sbjct: 267 NGEKVAEVHWNIVGEHNMRNGLMAIAAAHHAGVSIENACAA---LGVFINAKRRLEVKGN 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAE 394
                + + +  +P  ++A ++ L       E           E    +     H +   
Sbjct: 324 VQGVTVYDDFAHHPTEIQATLTALRDKVGQNERILAV-----LEPRSNTMKMGVHKEEIA 378

Query: 395 VLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    V+L           + A   +   + S+ +D     I +     D ++V  
Sbjct: 379 PALE-KADAVFLFQPDTIPWKVAEIAAHLTQPAYDSDNLDDFVHLIAAEAKPTDHILV-M 436

Query: 452 SNSCGFY----RLINLLLEE 467
           SN   F     +L++ L ++
Sbjct: 437 SNGS-FGGIHQKLLDALQKK 455


>gi|150014999|ref|YP_001307253.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Clostridium
           beijerinckii NCIMB 8052]
 gi|189082873|sp|A6LPL7|MURD_CLOB8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|149901464|gb|ABR32297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 115/383 (30%), Gaps = 55/383 (14%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
               ++  +  ITGS GKTTT  +++  L               +IG P  +      D 
Sbjct: 111 FVRYTRGKVYGITGSDGKTTTTTIISKLLEGQGYKTWVG----GNIGTPLFSEIENIHDE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L     +T      +AV T ++P HL     ++E   AK  IF      
Sbjct: 167 DKVVLELSSFQL-----MTMTQEIDVAVCTNLSPNHLDMHKSMQEYIDAKKNIFIYQNSN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G + +N ++        +  A G    +S  +        +      E   +  +     
Sbjct: 222 GLLVVNRENEITHGFIKE--AKGNVKEFSSKRELIDGAYYKNGILYLEDKEVCKKDDIVI 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   + +     V+   K    F   E R              
Sbjct: 280 K--------GMHNVENYLAAFLATKDDVSVEVMKKVAETFAGVEHRC---ELVREIDGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +        ++ V+      G   ++   +         
Sbjct: 329 YYNDSIASSPTRTLAGLRAFDE--------KVIVIA-----GGYDKNIPFEPLAYEGYPY 375

Query: 401 ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVV---K 450
           I  + L G     +KD            I+++  E+++      +S    GD+V +    
Sbjct: 376 IKELILMGATKHKIKDVFDNLENEKGIKININMVESLEEAVRLAESIANQGDIVTLSPAC 435

Query: 451 SS---------NSCGFYRLINLL 464
           +S             F  ++  L
Sbjct: 436 ASFDMYPNFMIRGNKFKEIVKSL 458


>gi|328471888|gb|EGF42765.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio parahaemolyticus 10329]
          Length = 452

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/369 (16%), Positives = 111/369 (30%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +            ++  +    D   +  K   + S  EV LQG+  +V     
Sbjct: 223 DQALADVLE-------CGCWTERQFSGEDGDWQAHKLVLDGSKFEVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEEQGITVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   +++    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTLGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + +   +         +D     I      GD ++V  SN  GF  +
Sbjct: 385 LFQPDNIEWSVQDIAEQCKQ--PAFVDADIDNFVAKIVERAQPGDQILV-MSNG-GFGGI 440

Query: 461 INLLLEEFP 469
              LLE+  
Sbjct: 441 HGKLLEQLK 449


>gi|310765081|gb|ADP10031.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia sp. Ejp617]
          Length = 491

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 121/398 (30%), Gaps = 41/398 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEVVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +A++T
Sbjct: 142 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   L  DD+    L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDAVIRDLIPRVGRQITTYGFS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  D      +Q ++  +  V+     M+V  +  G H A N    + + +    +
Sbjct: 254 EDADVRVDNYH---QQGAQGHFTLVRHDKPLMQVTLNAPGRHNALNAAAAVAVATEENIE 310

Query: 310 VDTAIKALSVFHPKEGRGKRYRCAL-----NQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  + AL  F     R                   ++ + Y  +P  +   I       
Sbjct: 311 DEDILNALESFQGTGRRFDFLGEYPLALSNGSAGTAMLVDDYGHHPTEVDVTIKAARAGW 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALK 415
           P        V+         ++  + D A VLS  ++     V+ +G          AL 
Sbjct: 371 PDKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIAGADSRALC 426

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +     V        D +   +   L   D+++V+ 
Sbjct: 427 RTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQG 464


>gi|311103841|ref|YP_003976694.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
 gi|310758530|gb|ADP13979.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans A8]
          Length = 456

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 57/378 (15%), Positives = 107/378 (28%), Gaps = 39/378 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++A+ G+ GKTTT  ML   L +       +             AR        + 
Sbjct: 101 PGQHVLAVAGTHGKTTTSSMLAWVLEAAGMAPNFLIGGVAQD--LHVSARFDPSRRPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F  +  I +    +   +  +G I
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPGSGRI 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                 +  + + A+         +S   +  AD   +     +E ++  ++    +  V
Sbjct: 219 VRPAHCAALDRVIARGC-------WSETVTFGADGAWQATAPDAEGAFSVLRGGVTAGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFT 340
             +  G H   N L  L     +       I AL+ F   + R +             F 
Sbjct: 272 RWNLSGEHNRMNALAALAAAEHVGVPAAQGIDALTRFAGVKRRMELRGTVDGIKVYDDFA 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M                  +L +
Sbjct: 332 HHPTAIATTLEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPE------------ALAD 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G H               P        + +  L   +  +   GD V+V  SN
Sbjct: 380 ADLVFCFGAHAGKHALGWNPAEVLAPLGDRASSYDDIGALVAAVAGAARPGDQVLV-MSN 438

Query: 454 SCGF----YRLINLLLEE 467
             GF     +L++ L   
Sbjct: 439 G-GFGGVHGKLLDALQAR 455


>gi|295698678|ref|YP_003603333.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
 gi|291157135|gb|ADD79580.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Riesia
           pediculicola USDA]
          Length = 439

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 68/370 (18%), Positives = 128/370 (34%), Gaps = 50/370 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              II+ITGS GK+TT  +LT                  +IGVP+    +  D D  I E
Sbjct: 106 DKKIISITGSNGKSTTASVLTEIAKKANLKV----GLGGNIGVPVLEL-LNYDYDIYILE 160

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +T  ++   AVI  I+  H+  +        +         K   I + 
Sbjct: 161 LSSFQL----EITSTLKSIGAVILNISENHMDRYPFGMYQYLSAKLKIYDFAKNCVINIM 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            +  + + +  +          SFG +         ++  ++++ ++   +         
Sbjct: 217 DNRIWPKEIDKR-------NFLSFGINSG------DYRLNTKKNTIQRFEKDLIHIKFIK 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            IG H   N L TL +  I+   ++ ++  +S +     R    +    +     I++S 
Sbjct: 264 IIGQHNHMNFLATLCLSEIIGIPINISLFVISRYSGLPHRL---QVVHKKNGVIWINDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
           + N  S  AA+  +         +   +LG     G+  +S    L E +S      ++ 
Sbjct: 321 STNIESTIAALKSI-----KANNKIHLLLG-----GDKRKSKISRLKEFVSYKKKIRIYC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G   L        SI      T++   L +  +   GD++++    SS           
Sbjct: 371 FGKDKLKFGKLRNDSI---VLNTLEQCMLKVSKNTESGDIILLSPACSSLDQFSNFEHRG 427

Query: 455 CGFYRLINLL 464
             F  +   L
Sbjct: 428 SVFSEIAKKL 437


>gi|114570630|ref|YP_757310.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Maricaulis
           maris MCS10]
 gi|114341092|gb|ABI66372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Maricaulis maris
           MCS10]
          Length = 474

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 104/385 (27%), Gaps = 38/385 (9%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
             MV    ++  PV G  D+      LA     + +  +I ITG+ GK+TT  ++   L 
Sbjct: 83  HHMVELARAVEAPVIG--DIELFAQALA-DLPEKRRPKVIGITGTNGKSTTTALIGHILR 139

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +  +          +IG  +     P    + + EL    L     L       +AV+  
Sbjct: 140 ATGRNVVVG----GNIGDAILAQSPPRPGSYYVLELSSYQLDLTHTLAC----DVAVLLN 191

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL---KAKSHALGIKTIY 248
           + P H+      +    AK  +FE  +  G   +  DD+          +          
Sbjct: 192 VTPDHIDRHGDFDGYFRAKKRLFEMQKPGGLAVVGIDDNTTSAYYSALRRQRREEEVIPI 251

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           S G+           +           +   +      G          +       +  
Sbjct: 252 SAGRVFARGVYALGDRVYDALDCASHPIVDLAKVPTLPGRHNAQNAAAALATVRALGVAG 311

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
                        P      R          T +++S   N  +   A+    ++     
Sbjct: 312 RAAADAITTFPGLP-----HRQERVATINGVTYVNDSKATNAEAAVQALGCYERVRWIIG 366

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE 428
           GR  A       +      FH           ++  +L G    +    L   +      
Sbjct: 367 GRAKA-----GGLSAAKPQFHR----------VAKAYLIGEASESFGRELDGELPNESCG 411

Query: 429 TMDGLFLFIQSSL----VDGDVVVV 449
            + G               G V+++
Sbjct: 412 DLAGAIAAATRDALAEGGSGQVILL 436


>gi|293393178|ref|ZP_06637493.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
 gi|291424324|gb|EFE97538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia odorifera DSM 4582]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 82/405 (20%), Positives = 133/405 (32%), Gaps = 45/405 (11%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V   +   I  +S P +  D VL          R R    ++A+ G+ GKTTT  M    
Sbjct: 78  VEAVLEQGIPYVSGPQWLHDHVL----------RDRW---VLAVAGTHGKTTTAGM--AT 122

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIA 187
                  Y          G     AR+     F + E                   P   
Sbjct: 123 WILEACGYQPGFVIGGVPGNFEVSARLG-GSPFFVIEADEYDCAFFDKRSKFVHYSPRTL 181

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           ++  +   H   F  ++ I      +   +   G I L  +D   + + A          
Sbjct: 182 IMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPDNDPHLKQVMA-------MGC 234

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLGIVSIL 306
           +S  +    +   R  K  ++ S  EVQL G+++ EV    +G H   N LM +     +
Sbjct: 235 WSEQELVGEEGVWRANKLTADASRYEVQLNGETVGEVNWTLVGEHNMHNGLMAIAAARHV 294

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                 A +AL+ F       +R          T+ D+   A+  +   A     +    
Sbjct: 295 GVLPADACRALNDF---INARRRLELRGEANGVTVYDDF--AHHPTAILATLAALRGKVG 349

Query: 367 GEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLALKDALPR 420
           G  R +AVL    +  +MG         L           V+L   H       + A   
Sbjct: 350 GTARILAVLEPRSNTMKMGINKNELAPSLGR------ADEVFLFQPHHIPWQVAEVAEAC 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               H+S  +D L   +  +   GD ++V  SN  GF  + + LL
Sbjct: 404 VQPAHWSADVDTLVEMVVKTAQPGDHILV-MSNG-GFGGIHDKLL 446


>gi|288801607|ref|ZP_06407049.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
 gi|288335649|gb|EFC74082.1| UDP-N-acetylmuramate--alanine ligase [Prevotella melaninogenica
           D18]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 103/352 (29%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    DF + E    
Sbjct: 115 LCFAGTHGKTTTSSMCAHLMHQSHLDCNAFLGGISKN--YGTNYILSDHSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++K G + +     
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIIRKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               ++          IY + + +               ++          ++       
Sbjct: 228 MKPNVQE------GVRIYEYSRDEGDFHAENIRIANGTITFDFFSPIENIKDIELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENGISAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDNRHVFLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   + +        +          +   ++ F+ + AE L   +   V L+   
Sbjct: 342 QSAKSLKELYADKKVTAIFQPH--------LYTRTRDFYKEFAEAL--SHFDEVVLTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L  ++     +  D +  F++S   D DV+VV  
Sbjct: 392 PAREEPIPGVTSELIYDNLSPNVKKQMIK-KDDVLDFVKS--RDFDVLVVLG 440


>gi|255020011|ref|ZP_05292084.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970540|gb|EET28029.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 454

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 134/401 (33%), Gaps = 52/401 (12%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAI 113
             A+  GA LV+V+  +  ++ +L       +    DV     +LA        A I AI
Sbjct: 64  ADAL-LGADLVLVSPGLAPTLPALRAAREAGIALWSDV-ELFGRLAR-------APIAAI 114

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL---ARMPVDVDFGIFELGMS 170
           TGS GK+T   +L     +  +      +   ++G P           + +  + EL   
Sbjct: 115 TGSNGKSTVTTLLGEMAKAAGRRV----AVGGNLGTPALDLLPEAGAPEPELYVLELSSF 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L         +RP +A I  ++P HL     +E   +AKA IF  + +  T+ LN +D 
Sbjct: 171 QLHYCH----ALRPRVAAILNLSPDHLDWHGDMEAYLAAKARIFRTMGEGDTLVLNGEDP 226

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + L AK+ A        FG +   D            +               H  G 
Sbjct: 227 ALQSLPAKAPAGVEIR--RFGHTPQLDAWADDLALHWPSAAPMPLAD-------IHLPGK 277

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N+L    + + L        +A + F     R +              D+S   N 
Sbjct: 278 HNGENVLAAALMANALNLPETAIRQAAADFRGLPHRLQWVARVGGVD---YYDDSKGTNL 334

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +   AI  L        G  + +LG   +  +LS     +     +L       L G  
Sbjct: 335 GASLRAIQAL-------PGPLVLILGGDAKGADLSPL--RE-----ALRGQRGAVLLGKD 380

Query: 411 VLALKDALPRSIHVHYSET--MDGLFLFIQSSLVDGDVVVV 449
              L+  L  S+         M        +    GD V++
Sbjct: 381 AAILEAILAGSLPTLRIGEGGMSRAVRAAAAMAQPGDQVLL 421


>gi|62900655|sp|Q5E2P8|MURD_VIBF1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 440

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 125/369 (33%), Gaps = 52/369 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +         +   +IG       +  D +  + E
Sbjct: 107 NAPVIAITGSNGKSTVTDLTGEMAKAAGV----KTAVGGNIGFAALDL-LEQDAELYVLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E        
Sbjct: 162 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAEVC------ 211

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +        +    KS   D       +     ++              
Sbjct: 212 --------IVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAANELG 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ + ++     ++D  +  L  ++    R    +   +      +++S 
Sbjct: 264 LVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRC---QVVADNNGIRWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  ++ 
Sbjct: 321 ATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MMYC 369

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G          PRS+     ETM+     +  +L  GD+V++    +S           
Sbjct: 370 FGEDGDQFVSLDPRSL---LCETMNEAIATLYPTLNKGDMVMLSPACASFDQYANFMARG 426

Query: 455 CGFYRLINL 463
             F +L   
Sbjct: 427 DAFTQLAKQ 435


>gi|323699053|ref|ZP_08110965.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio sp.
           ND132]
 gi|323458985|gb|EGB14850.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/476 (14%), Positives = 136/476 (28%), Gaps = 92/476 (19%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA-----IKGPHYDGHDFILHAV 61
              LL  +      +     V         + P     A     + GPH  GH F     
Sbjct: 31  AARLLDVLGARVRVVDRDESVTEA-----KLGP----LAGKAELVVGPHEKGH-FAD--- 77

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
              A ++V++  +     +  +      +V+  L + A       +A I+A+TGS GKTT
Sbjct: 78  ---ADVIVLSPGVPVRKLAPVLEGVPARNVVSEL-EFASWF---IEAPILAVTGSNGKTT 130

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTH 180
           T  +++  L    +          +IGVPL    + ++  +  + E+    L        
Sbjct: 131 TTTLISEILEKAGRRVFTG----GNIGVPLCEYLLDMEPAEIIVLEVSSFQLQNCLRF-- 184

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +PH+ +    +  HL   + ++E                                   
Sbjct: 185 --KPHVGLFLNFSANHLDYHADLDEYLD-------------------------------- 210

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              +      G    A            +S+ E  ++                 N     
Sbjct: 211 -AKLHLFSRMGPEDIALLHESLHPLLDGRSFTEAHIEWFGPTNRFEAPHLLGEHNRSNVE 269

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +     +  +A            R      +     +++S      + +AA+   
Sbjct: 270 AAWQAVKRFGVSEEQAAEAIRDFRPLPHRIEPVAERNGVLYVNDSKATTLDAAEAAVHAF 329

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  E     ++G + + G++++        V +      V L G     L+  L R
Sbjct: 330 -------ERPVRILMGGVWKGGDVAKFAEGIKGRVAA------VGLFGGSREILEPELAR 376

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVK------------SSNSCGFYRLINLL 464
              V + ET+             GDVV++             +     F R +  L
Sbjct: 377 HFSVTWDETLTEAVRRQAGLAAPGDVVLLSPATSSFDQYHNMAERGADFKRAVEGL 432


>gi|229552075|ref|ZP_04440800.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539491|ref|YP_003173990.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314508|gb|EEN80481.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151167|emb|CAR90139.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus Lc 705]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 101/352 (28%), Gaps = 43/352 (12%)

Query: 132 SIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + + +        +IG+P++   +     D  + EL    L         + PHIAV+T
Sbjct: 133 MLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQL----CGIKTLHPHIAVLT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL          +AK  I           +N+D      L  +S A         
Sbjct: 189 NIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQ-------- 240

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                +  Q    +      W+                G H  +N L  +    +     
Sbjct: 241 -IVPFSRKQAAGARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSD 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L  F   + R +       +    + ++S   N  +   A++   Q      G 
Sbjct: 300 DAIREVLRTFSGVKHRIQYLETINGR---RVYNDSKATNVEAATVALNAFQQPIVWLAGG 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
               L  M  +              L   ++  + + G     +        + V  +E 
Sbjct: 357 LDRGLP-MDALTP------------LVKKHVKSMVVFGQTAPLMAKIAKEAGVPVQKTEN 403

Query: 430 MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEEFP 469
           +         +   GDV+++    +S             F + ++ L +   
Sbjct: 404 VMTAVPLAYEASRPGDVILLSPAAASWDQYPNFEVRGDDFIKAVHSLQQNLE 455


>gi|134302121|ref|YP_001122090.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049898|gb|ABO46969.1| cyanophycin synthetase [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 940

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 107/385 (27%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL       +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGVNTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|85860093|ref|YP_462295.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine [Syntrophus aciditrophicus
           SB]
 gi|119371979|sp|Q2LVL5|LPXD_SYNAS RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|85723184|gb|ABC78127.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine [Syntrophus aciditrophicus
           SB]
          Length = 363

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQK 63
           + +++   + G  +G      +  +  ID     P +  F A          +     + 
Sbjct: 4   SINEIADFLGGKVVGDGG-ILIKAVRGID--EAGPGDITFVANP-------QYEKKLNET 53

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           GA  V+V  D        ++ +  VDD   +L KL        +  
Sbjct: 54  GASAVLVTRDT--ERPGENVTLIQVDDPYVSLGKLLTIFYPEEREK 97


>gi|57168799|ref|ZP_00367930.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
 gi|57019846|gb|EAL56529.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter coli RM2228]
          Length = 427

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/409 (11%), Positives = 108/409 (26%), Gaps = 52/409 (12%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI-IAI 113
           +F   A++KGA ++ V           +I + G+    G     A    +         +
Sbjct: 31  NFASDALEKGAKIIDVEECKKLLKIDENIKIIGITGTNGKTTTAAAIYSILLDLGFKCGL 90

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ G           ++  +     + +      +           DF I E+  S   
Sbjct: 91  CGTRG---------AFINDEQIDEKSLTTSPILKTLEYLQLATQKKCDFFIMEV--SSHA 139

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            ++     ++    + T I   HL      E   +AK   F                F  
Sbjct: 140 LVQNRIEGLKFAAKIFTNITQDHLDFHGNFENYKAAKELFFTDESLKFINKDTLMIKF-- 197

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
                     ++  +++G    + +Q++ +      S +                 +++ 
Sbjct: 198 ---------NVRNAFTYGIENPSLYQVKAYSLEDGISAIVALKDQSFHIDSPLLGLFNLY 248

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
             +  +  +  ++  ++    KA+S F    GR              ++D ++  +    
Sbjct: 249 NLLAASACVNELVKPNLKDLEKAISGFGGVCGR------VEQVANGIIVDFAHTPDGIE- 301

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
                    +      + I V G     G         L   +  +      ++  +   
Sbjct: 302 -------KVLDTLKNKKLIVVFGA----GGDRDKTKRPLMGKIVEHFAKIAIITSDNPRS 350

Query: 411 ------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                 +  +             E                D+VV+  K 
Sbjct: 351 EEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDLVVILGKG 399


>gi|317049721|ref|YP_004117369.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
 gi|316951338|gb|ADU70813.1| UDP-N-acetylmuramate [Pantoea sp. At-9b]
          Length = 451

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 111/368 (30%), Gaps = 34/368 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       I       GVP             F + E 
Sbjct: 105 VLAVAGTHGKTTTAGMAAWILEACGLEPGFIIG-----GVPGNFDVSAKLGKSPFFVIEA 159

Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S   + R       P   ++  +   H   F  +  I      +   +   G I L
Sbjct: 160 DEYDSAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLIRIVPGQGKILL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D   + + A          +S  ++   +   +  K   + S  E  L G  +  V+
Sbjct: 220 PEHDHNLKQVMA-------MGCWSEQETVGDNGHWQAKKLTPDASRWEAWLDGAKVAEVN 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            G+      +  +     +                    GR    R  L         + 
Sbjct: 273 WGLVGEHNMHNGLMAMAAARHVGVKPEDAGDA------LGRFINARRRLELRGEVNAIKV 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           Y+       A ++ L+ +     G    +   + E    +    +   ++         V
Sbjct: 327 YDDFAHHPTAILATLAALRSKVGGTARIL--AVLEPRSNTMKMGVSKNDLAPSLGRADEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L   H     V  + DA  +    H+S  +D L   +      GD ++V  SN  GF  
Sbjct: 385 FLFQPHHIPWQVSDVADACIQ--PAHWSADIDTLVEMVAKVAQPGDNILV-MSNG-GFGG 440

Query: 460 LINLLLEE 467
           +   LLE 
Sbjct: 441 IHQKLLER 448


>gi|53803416|ref|YP_114845.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
 gi|62900496|sp|Q604V5|MURD_METCA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|53757177|gb|AAU91468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylococcus
           capsulatus str. Bath]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 38/352 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
            A   R    A ++AITG+ GK+T   ++ +   +         +   ++G P+    + 
Sbjct: 118 FACCVR----APVVAITGANGKSTVTTLVGLMAKAAGVN----AAVGGNLGTPMLDL-LD 168

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              +  + EL    L        L    +A +  I+P H+  +  +   A AK  +F G 
Sbjct: 169 AAAELYVLELSSFQLERSE----LFEADVATVLNISPDHMDRYPDLASYAEAKRRVFRGE 224

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                          + L A  +  G +    FG     D       +   ++W+  +  
Sbjct: 225 GLMVLNQ-------DDPLVAAMYRPG-RRAVRFGLGSG-DELDYSLARWEGRAWLLAKGV 275

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                      G H   N L  + I      D    +  L  F   + R +         
Sbjct: 276 PLLPADEVRIKGRHNLANALAAVAIADACGFDRQAMVGVLRTFPGLDHRMQWVADIGGVA 335

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   N  +  AA+S L       EG+ + + G   +  + S          ++
Sbjct: 336 ---YVNDSKATNVGACIAALSGL-------EGKVVLIAGGDGKGADFSS------LVPVA 379

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    L G     + + L   +     +TM       +     GD V++
Sbjct: 380 AEKLRAAVLMGRDGPLIDEVLKGVVPTIRVKTMFEAVRAARGVAQSGDTVLL 431


>gi|15889377|ref|NP_355058.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium tumefaciens
           str. C58]
 gi|23821880|sp|Q8UDM9|MURC_AGRT5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15157227|gb|AAK87843.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium tumefaciens str.
           C58]
          Length = 471

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/404 (17%), Positives = 136/404 (33%), Gaps = 42/404 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VVV+T +  +   L         ++     LA   R R     IAI G+ GKTTT  
Sbjct: 67  AEVVVVSTAIKKNNPELIAAREKHLPIVRRAEMLAELMRFR---NAIAIGGTHGKTTTTS 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +       I     +            + ++ + E   S           +  
Sbjct: 124 MVATLLEAGNLDPTVINGGIIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +     +
Sbjct: 176 DVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIEDRKV 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQNML 297
               ++G++  AD +    +    +S  +V+++           ++V    G H   N  
Sbjct: 236 I---TYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFKDLVLPMPGRHNVSNAT 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK--- 354
             + + + L        K L+ F   + R         +     + + Y  +P  +K   
Sbjct: 293 AAIAVANRLGISEADIKKGLASFAGVKRRFT----LTGEANGVQVFDDYGHHPVEIKAVL 348

Query: 355 ------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +++   PH   R  ++  D       + +  +          I      G
Sbjct: 349 AAAREACKGRIIAVHQPHRYSRLSSLFDDFAHCFNDADTILLAPVYAAGEDPIE-----G 403

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
               AL  A+  + H    + E  + L   + +    GD VV++
Sbjct: 404 ASSEALVSAIKAAGHRDARFLEKREDLASQVAAIANPGDFVVLL 447


>gi|328952239|ref|YP_004369573.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
 gi|328452563|gb|AEB08392.1| UDP-N-acetylmuramate [Desulfobacca acetoxidans DSM 11109]
          Length = 514

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 103/365 (28%), Gaps = 34/365 (9%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ++G+ GKTTT  +L   L +       +                     + + E      
Sbjct: 157 VSGTHGKTTTSSLLAWLLFAAGLDPGFMIGGIVRN---FNANYRVGQGPYVVLEGDEYDT 213

Query: 173 GEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                        P +A++T++   H   +  +  +A A       L   G +    D  
Sbjct: 214 AFFDKRPKFLLFHPRMAILTSVEFDHADIYRDLTHVAQAFTTFVSQLPPDGELLAWGDAP 273

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               + +++         +       D   +      + + M   +  +        +  
Sbjct: 274 LVRQVASQASCQVAYYGLNS------DAFWQGRNLTPKGAGMNFDVHRQGRFWESFYVPL 327

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+L TL     +  D+    ++L    P     KR    +       + + +  +P
Sbjct: 328 AGRHNVLNTL-AALAVLNDLGVDRRSLKEALPDFVGVKRRLEVVGDVAGVTVVDDFAHHP 386

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF- 409
            ++   +       P         L    E    +    I  ++ ++    + + L    
Sbjct: 387 TAVAETLLAARGRFPGRR------LLTAFEPRTNTSRRRIFQSDYVNALAAADLILVREP 440

Query: 410 -------------HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
                            + D   +     Y    D L   + +    GDVV+V  SN  G
Sbjct: 441 PDLWKAPEDDRFSSAQLVADLNRQGRPAWYFPDTDTLLAALIAKAEPGDVVLV-MSNG-G 498

Query: 457 FYRLI 461
           F  LI
Sbjct: 499 FDGLI 503


>gi|209884384|ref|YP_002288241.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
 gi|209872580|gb|ACI92376.1| UDP-N-acetylmuramate--alanine ligase [Oligotropha carboxidovorans
           OM5]
          Length = 482

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/398 (17%), Positives = 136/398 (34%), Gaps = 31/398 (7%)

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            GA ++VV+T +      L +     +  V  A   LA   RL+S    IAI G+ GKTT
Sbjct: 80  NGADVLVVSTAIKRDNPELMAARAQRIPVVRRA-EMLAELMRLKS---CIAIAGTHGKTT 135

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L +       I     +            + ++ + E   S           
Sbjct: 136 TTSMVATLLDAGALDPTVINGGIIN---AYGTNARLGEGEWMVVEADES-----DGTFLK 187

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +A++T + P HL +F   E +  A     EG+   G   +  D +  + L  +   
Sbjct: 188 LPVDVAIVTNVDPEHLDHFKTFEAVQDAFRHFVEGVPFYGFAVMCIDHAVVQALVGRIED 247

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQ 294
                I ++G++  AD +L   +     S  +V+++ +         ++V    G H A 
Sbjct: 248 R---RIITYGENPQADARLVDLQPFPGGSKFKVEVRHRKAGAAHVIADLVLPMPGRHNAL 304

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNAN 349
           N    + +   +    +   KAL+ F   + R            ++      ++ +    
Sbjct: 305 NATAAIAVAHEIGMSDEAIRKALAGFGGVKRRFTRTGEWNGVTVIDDYGHHPVEIAAVLK 364

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A   A   V++ + PH   R   +  + C     + +    +   +     + +     
Sbjct: 365 AARDTATGRVIAVVQPHRFSRLHTLFEEFCTCFNDADTV---IVADVYPAGEAPIPGIDR 421

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               L         V   E+   L   ++     GD V
Sbjct: 422 DAFVLGLRAHGHREVIALESAAQLASIVRRIAQPGDFV 459


>gi|323701289|ref|ZP_08112964.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533891|gb|EGB23755.1| UDP-N-acetylmuramate/alanine ligase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 459

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 109/351 (31%), Gaps = 34/351 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M  + L         +   +      +         D+ + E   S
Sbjct: 109 IAVAGAHGKTTTTSMTALVLEMNGLDPTILIGGDLSY---IGGNAKLGRGDYLVAEADES 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                     L+ P +AV+T I   HL  +   E I  A  E    + ++G   +  DD 
Sbjct: 166 -----DGSFLLLDPVVAVVTNIEDDHLDYYGSRENIVKAFREFLNKVPESGLAVVCGDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L A         + ++G   +             ++ +                  
Sbjct: 221 TVRQLIADL----TCPLVTYGSYNSGADYTIDSFALQGETTLGQVSFRGEKLGQLVLNVP 276

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                +     +       +  +  A ++   K  + +       +G   + D +++   
Sbjct: 277 GYHNLLNALAVVAVGRYVGLSFSQIAAALREFKGAKRRYQLIGEVKGAKIVDDYAHHPTE 336

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
                  + L        GR IAV          ++    +  E  +  +   + L+   
Sbjct: 337 -----IKATLQAARQAHPGRIIAVFQPHR--FTRTRQLFREFGESFA--HADILILTDIY 387

Query: 408 --------GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                   G H   + DA+ +  +  V Y  T++    F+   + +GD+V+
Sbjct: 388 PAGEKPIEGVHTKLIVDAIAKRPNQQVIYLPTLEEATNFLTQQVTEGDLVL 438


>gi|269137740|ref|YP_003294440.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|267983400|gb|ACY83229.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda EIB202]
 gi|304557798|gb|ADM40462.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Edwardsiella tarda FL6-60]
          Length = 458

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 131/418 (31%), Gaps = 45/418 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +  +I  +S P +  D+VL                 +IA+ G+
Sbjct: 67  IGNAMARGNPC--VEAILERNIPYVSGPQWLHDEVLR-------------HRWVIAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+          Y          G     AR+     F I           +
Sbjct: 112 HGKTTTAGMVN--WILESCGYEPGFVIGGVPGNFSVSARLGKSPFFVIEADEYDCAFFDK 169

Query: 177 FLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                   P   ++  +   H   F  +  I      +   +   G I L   D+  + +
Sbjct: 170 RSKFVHYCPRTLILNNLEFDHADIFDDLRAIQRQFHHLVRLVPGQGRIILPAGDANLKQV 229

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQ 294
            A          +S  +    +      +  ++ S   V        EV    +G H   
Sbjct: 230 MA-------MGCWSEQELCGDEAAWSATRLSTDASRFSVSLDGECVGEVEWALVGEHNMH 282

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N LM +     +      A +A           +R      Q +   + + +  +P ++ 
Sbjct: 283 NGLMAIAAARHVGVPPAEACRA----LGSFINARRRLELRGQAYGVSVYDDFAHHPTAIL 338

Query: 355 AAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH- 410
           A ++ L      G  R +AVL    +  +MG         L           V+L     
Sbjct: 339 ATLAALRG-KVGGTARILAVLEPRSNTMKMGVCKNELAPALGR------ADEVFLYQPQH 391

Query: 411 --VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
                 + A       H+S  +  L   I  +   GD ++V  SN  GF  + + LL+
Sbjct: 392 IPWQVAEVAEACVQPAHWSADLGTLVEMIVKNAQPGDHILV-MSNG-GFGDIHDRLLQ 447


>gi|294674973|ref|YP_003575589.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
 gi|294472650|gb|ADE82039.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella ruminicola 23]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 98/354 (27%), Gaps = 43/354 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  M    +   +          +          +  D D+ + E    
Sbjct: 115 LCVAGTHGKTTTSTMCAHIMHQSQLDCNAFLGGISKN---YGTNYILSDSDYVVIEAD-- 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +             I       
Sbjct: 170 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYT------ELIQPGGALI 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L+ K +      IY +  ++             E ++  +        V       
Sbjct: 221 IHRDLEMKQNVQEGVRIYDYSLNEGDFHAENIRIDNGEITFDFISPIESVKNVQLGQPVP 280

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     D     +  +   + R           F +          
Sbjct: 281 INIENGIAAMAMAQLNGCTADELKYGMQTYGGVDRRFDFKIKTDKLVFLSDYAHHPKEIY 340

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +             A+      +   ++ F+ D A+ LS   +  V L+   
Sbjct: 341 QSAKSIRELYK------NKHITAIFQP--HLYTRTRDFYKDFADALSQ--LDEVILTEIY 390

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-------LVDGDV 446
                   G     + D L   +     +    +  +I+         L  GD+
Sbjct: 391 PARELPIEGVTSQLIYDNLKPGVQKKMIQ-KADVLDYIKDHDFEVLIVLGAGDL 443


>gi|291612524|ref|YP_003522681.1| UDP-N-acetylmuramate [Sideroxydans lithotrophicus ES-1]
 gi|291582636|gb|ADE10294.1| UDP-N-acetylmuramate [Sideroxydans lithotrophicus ES-1]
          Length = 457

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 93/370 (25%), Gaps = 35/370 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTY-------ACIGSYNNHIGVPLTLARMPVDVD- 161
           ++ + G+ GKTTT  ML   L                    +  +  P            
Sbjct: 109 VLGVAGTHGKTTTTSMLAWILEYAGLNPGFLIGGVPQNFGISARLPSPQPSPSGRGGHGG 168

Query: 162 FGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
           F + E                   P  A++  +   H   F  +  I +    +   +  
Sbjct: 169 FFVIEADEYDTAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLVAIETQFHHLVRTVPG 228

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G +  N  +     +  +     ++   S         +        +       L   
Sbjct: 229 NGLVVCNGREDSLARVIQRGCWTPVEKFGSDDGWNIDANEQVSLNGKIQGKLQWDLLGEH 288

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
           +       +       + +  G+ ++                   G         +    
Sbjct: 289 NRLNALAALAAARHAGVPVAQGLAALSEFKNVKRRME------VRGTVNGITVYDDFAHH 342

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
               ++  A          +L+ + P     +   LG M +    S              
Sbjct: 343 PTAIDTTVAGLRRKVGRARILAVLEPRSNTMK---LGVMKDALPGSLK------------ 387

Query: 400 NISHVWLS-GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +    +   G      + AL          + ++ L   I ++   GD ++V  SN  GF
Sbjct: 388 DADLTFCYAGNLGWDARGALAPLGDKAVVKDELNDLIESIVAAAKSGDQILV-MSNG-GF 445

Query: 458 YRLINLLLEE 467
             +   LL+ 
Sbjct: 446 GGIHEKLLKR 455


>gi|163794525|ref|ZP_02188496.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
 gi|159180249|gb|EDP64772.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [alpha
           proteobacterium BAL199]
          Length = 472

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 98/381 (25%), Gaps = 45/381 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      ++AITG+ GK+TT  ++   L+S             ++G P      P     
Sbjct: 106 RALPDRRLVAITGTNGKSTTTALIGHILASANV----PVEVGGNLGRPALEFADPGPNGV 161

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     LT  + P +AV   I P H+     +    +AK  IF      G 
Sbjct: 162 VVLELSSYQL----ELTPSLAPTVAVWLNITPDHIDRHGSLAGYVAAKRRIFAHQTPRGL 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIY-SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
             +  DD+    +  +    G +    S              +    +S     +   + 
Sbjct: 218 AVIGNDDAHSRDVADRLRRDGRRIFDLSGVGPVVGGVYAEDSELIDARSGRPETVLSLTE 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                G                             +  F     R +R   A    +   
Sbjct: 278 APALPGEHNAQNAAAAFAACAAL--GIQRSAIADGIRSFPGLAHRQERIAEAGGVLYVND 335

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +     A   A  S +  I+           G +  +                   I
Sbjct: 336 SKATNADAAARALACYSAIYWIAGGRGKE-----GGVSSLAPFFPR-------------I 377

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL----VDGDVVVVK---SS-- 452
              +L G         +          T++                G VV++    +S  
Sbjct: 378 RKAYLIGESAGTFAREIGDDCPTGLCRTLEMAVRQAHLDAQADPRPGAVVLLSPAAASFD 437

Query: 453 -------NSCGFYRLINLLLE 466
                      F  L+  LL+
Sbjct: 438 QFPNFEVRGDRFRTLVRDLLD 458


>gi|15679903|ref|NP_275877.1| UDP-MurNac-tripeptide synthetase [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|7482867|pir||B69198 UDP-N-acetylmuramyl tripeptide synthetase related protein -
           Methanobacterium thermoautotrophicum (strain Delta H)
          Length = 450

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/434 (14%), Positives = 123/434 (28%), Gaps = 58/434 (13%)

Query: 57  ILHAVQKGAGLVVVNT---DMVASIGSLSIPVFGVDDVLGALNKLAVAA---RLRSKATI 110
           I  A ++G   ++                +PV  VD +  A N LA++    R    +  
Sbjct: 28  IEIASERGVSAIITQDLRGKSSRLAEEHGLPVILVDRIENA-NALALSWTIERFAPSSRR 86

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV---PLTLARMPVDV-----DF 162
           + +TG+ GK+TT  M+   + +   +        +       P+   ++         +F
Sbjct: 87  VVVTGTNGKSTTTHMIHHIIETTGASSYTNTDSRSEFNTLIDPVVSQQIAEASSDGAPEF 146

Query: 163 GIFELGMSHLGEIRFLTHLVR-------PHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
            + E+        R +    R       P + VIT +A  H+     +E++    A    
Sbjct: 147 MVIEVSEVQGWLGRVMRDHARMMTAAIGPEVVVITNVAMDHIGLVESVEDVFREVAG--- 203

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                    L   +S   +L A    +      + G S              +   + + 
Sbjct: 204 --------ALRAIESGVAVLNADDERVRAMAHVNPGLSVVF--YGSDSPVRYDGEGIHIG 253

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                          H  QN L        L    +     +  + P + R       L 
Sbjct: 254 GDLIIPAEELPFRSEHFIQNTLAAAAACLELGFSPEDIRMGVKTYRPLKRRFS----VLM 309

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAE 394
                + D ++N +          +   + +  GR   V       GE     +   LA+
Sbjct: 310 TEPLVIDDFAHNPSGIRF-----TVRSAAANLRGRLWVVNAIRGSRGEDINVMNAAALAD 364

Query: 395 VLSLYNISHVWL-----SGFHVLALKDAL--------PRSIHVHYSETMDGLFLFIQSSL 441
            L   N   +              L++           R     + E +      +  + 
Sbjct: 365 SLRGLNAELIVTSSSDVVDEQNRVLENERRAFLGVLDERGASYIHVEKLRDALRMVLDAA 424

Query: 442 VDGDVVVVKSSNSC 455
              D +++  +   
Sbjct: 425 KPHDTILLLGAQGM 438


>gi|164688866|ref|ZP_02212894.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
 gi|164602070|gb|EDQ95535.1| hypothetical protein CLOBAR_02514 [Clostridium bartlettii DSM
           16795]
          Length = 450

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 116/363 (31%), Gaps = 31/363 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L    +       IA++G+ GKTTT  ML+      +     +   N      + 
Sbjct: 92  AFLGQLMREYKNS-----IAVSGTHGKTTTTSMLSTIFEHAELDPTILVGGNLKS---IG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D  I E       E         P IA++  I   HL  FSGI+EI ++  +
Sbjct: 144 GNVKIGHSDHFITEAC-----EYVDSFLNFNPKIAIVLNIEEDHLDYFSGIDEIKASFNK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQS 270
             + L   G   +N D+   ++L              FGK ++ D  +           S
Sbjct: 199 FGKLLPSDGYFVINGDNQNMDILHDVKAKA-----IKFGKKESNDVIIENIAFDDLGCGS 253

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +    +  K         G H   N    + +  +   D++T  + +  +     R +R 
Sbjct: 254 FDLNYMGKKLTGFKLSVPGLHNIYNATSAIIVSLVSGIDLETVKEGIIDYTGVGRRFERK 313

Query: 331 RCALNQGFFTLIDES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                                  + A      ++     PH   R I++L +  E    +
Sbjct: 314 GQYNGAAIIDDYAHHPTEIKATLSTAKRFKKGTLWCVFQPHTYSRTISLLDEFAEAFYSA 373

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDG 444
               I         +   V     H   L + L   ++   Y    + +  +++ ++ + 
Sbjct: 374 DKVIITDIYAAREDDPGTV-----HSRDLVEKLQHNNVDAIYISQFEDIVKYLKENVKEN 428

Query: 445 DVV 447
           DVV
Sbjct: 429 DVV 431


>gi|300715309|ref|YP_003740112.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
 gi|299061145|emb|CAX58252.1| UDP-N-acetylmuramate-alanine ligase [Erwinia billingiae Eb661]
          Length = 491

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 130/399 (32%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 91  DNPEVVAAREARIPVI-----RRA-EMLAELMRYRHG---IAVAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +A++T
Sbjct: 142 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   L  DD+    L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFVNFLHNLPFYGRAVLCIDDAVIRELIPRI----SRHITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  V+     M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVENYQQNGAQGHFTLVRHDKPLMHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +    + AL  F     R         + A       ++ + Y  +P  +   I      
Sbjct: 310 EDAEILSALESFQGTGRRFDFLGEYPVQAANGTAGTAMLVDDYGHHPTEVDVTIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P  +     V+         ++  + D A VLS  ++     V+ +G          +L
Sbjct: 370 WPDKQ----LVMVFQPHRYSRTRDLYDDFANVLSQVDVLLMLDVYPAGEAPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V        D +   +   L   D+++++ 
Sbjct: 426 CRTIRGRGKVDPILVSDHDAVLDMLAPKLSGNDLILIQG 464


>gi|312959058|ref|ZP_07773577.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
 gi|311286828|gb|EFQ65390.1| UDP-N-acetylmuramate-L-alanine ligase [Pseudomonas fluorescens WH6]
          Length = 481

 Score = 49.1 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 139/413 (33%), Gaps = 43/413 (10%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH    +A +         V  +   VA+     IPV         +  LA   R R   
Sbjct: 67  GHR-AENAAEADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG- 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++    ++       +     +               + I E  
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEAD 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P +AV+T I   H++ +     ++     E    L   G   +  
Sbjct: 174 ESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +  +     +    ++G S++AD +    +Q   Q++  V    +    V   
Sbjct: 229 DDPVVREILPQVKRPTV----TYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLDVSVN 284

Query: 288 IGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           +  +      +  + I +      +  ++ LS F     R + Y      G   ++ + Y
Sbjct: 285 MPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLPVDGGDVMLVDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I  +    P        V+         ++  + D   VL+  N+     
Sbjct: 345 GHHPTEVAAVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVNVLADANVLLLME 400

Query: 404 VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G           L +++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAGDILL 453


>gi|119505122|ref|ZP_01627198.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
 gi|119459104|gb|EAW40203.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [marine gamma
           proteobacterium HTCC2080]
          Length = 453

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 110/343 (32%), Gaps = 32/343 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +I ITGS GK+T   M+   LS+  K      +   + G P     +   VDF + E
Sbjct: 111 SAPVIGITGSNGKSTVTAMVASMLSACGKRV----AVGGNFGTPALDL-LDQAVDFYVLE 165

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         ++  +A +  ++  HL     +     AK +IF+G         +
Sbjct: 166 LSSFQL----ERAQPLKLAVATVLNVSADHLDRHGSMPRYHHAKHKIFQGAHAVVANRAD 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                          L   T     +  + D      +Q     ++              
Sbjct: 222 SLTLPL---------LDGGTRQVLWRPTDPDLDEFGVRQLDGVPYVCCGFTPLFPVSELK 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N+L  L +   L   ++  I  L  F     R       L+    + I++S 
Sbjct: 273 LKGMHNLNNVLAALALGVALDLPLERLIAGLKDFSGLPHRC---ELVLDDAGVSWINDSK 329

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  +        + ++  G    + ++      G+   +   ++       +   V  
Sbjct: 330 GTNVGA------TRAALAGLGAQENVVLIAGGVGKGQDFTALLPEV-----RNHCRRVLT 378

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G     ++ AL     V   ++++       +    GDVV++
Sbjct: 379 LGESAREIELALGAHTPVQRVDSLEDAVAKAAALAQAGDVVLL 421


>gi|59712810|ref|YP_205586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           fischeri ES114]
 gi|59480911|gb|AAW86698.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Vibrio fischeri
           ES114]
          Length = 404

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 125/369 (33%), Gaps = 52/369 (14%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A +IAITGS GK+T  ++      +         +   +IG       +  D +  + E
Sbjct: 71  NAPVIAITGSNGKSTVTDLTGEMAKAAGV----KTAVGGNIGFAALDL-LEQDAELYVLE 125

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  ++   A    ++  H+  + G+ +   AK  IFE  E        
Sbjct: 126 LSSFQL----ETTSTLKLKAAAFLNLSEDHMDRYQGMADYRQAKLRIFEHAEVC------ 175

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   +  +        +    KS   D       +     ++              
Sbjct: 176 --------IVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKNTVPLLAANELG 227

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L+ + ++     ++D  +  L  ++    R    +   +      +++S 
Sbjct: 228 LVGKHNIANSLVAIALLDAAGINLDATLDTLRTYNGLTHRC---QVVADNNGIRWVNDSK 284

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       EG+   ++G + +  + S     +L+  L   N+  ++ 
Sbjct: 285 ATNVASTLAALSGLQL-----EGKLHLLVGGVGKGADFS-----ELSPALHDLNL-MMYC 333

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NS 454
            G          PRS+     ETM+     +  +L  GD+V++    +S           
Sbjct: 334 FGEDGDQFVSLDPRSL---LCETMNEAIATLYPTLNKGDMVMLSPACASFDQYANFMARG 390

Query: 455 CGFYRLINL 463
             F +L   
Sbjct: 391 DAFTQLAKQ 399


>gi|225017206|ref|ZP_03706398.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
 gi|224949981|gb|EEG31190.1| hypothetical protein CLOSTMETH_01132 [Clostridium methylpentosum
           DSM 5476]
          Length = 457

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 110/400 (27%), Gaps = 47/400 (11%)

Query: 63  KGA------GLVVVNTDMVASIGSLSIPVFG--VDDVLGALNKLAVAARLRSKATIIAIT 114
           KGA        ++ +   + +     IP     V      L  +            I ++
Sbjct: 70  KGADLIVYTAAIMEDNPELIAAKQSGIPTIERCV-----LLGLITERYSD-----CICVS 119

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  MLT  L    K  + +          +         +  + E       E
Sbjct: 120 GTHGKTTTTSMLTQILLDAGKDPSAVIGGKLKS---IEGYGRSGSSEVMVCEAC-----E 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P IAV+  I   H+  F  +E +  +  +      K      +  +     
Sbjct: 172 FVDTFLHLSPDIAVVLNIDRDHMDYFKTMENLKLSFEKFCRKATKCILYNGDDAN----- 226

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A+      +   +FG S   D+     +           +         +        
Sbjct: 227 -SAEVAGRVDQRKVTFGFSDQNDYYPANVQHVDGLHTTFDLMHKGERLTSLNLFVPGDHN 285

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            +  T    + L   V     A  + + K    +        G   + D +++     + 
Sbjct: 286 ILNATAACAAALETGVRPEQLAEGLGNFKGAGRRFELLGKINGITIVDDYAHHPAEIKVT 345

Query: 355 -------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
                      V +   P    R   +L D  E   ++    +         N       
Sbjct: 346 LQAAQSLNFNKVWAVHQPFTYSRTAMLLDDFAEALSIADQVVLSEIMGSREKN-----TY 400

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           G +   L D +       +  T + +  ++ S    GD+V
Sbjct: 401 GIYAKDLADKIDG---CVWFPTFEEISDYVLSHAEPGDLV 437


>gi|329122143|ref|ZP_08250751.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
 gi|327466950|gb|EGF12466.1| UDP-N-acetylmuramate--L-alanine ligase [Dialister micraerophilus
           DSM 19965]
          Length = 463

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 74/426 (17%), Positives = 145/426 (34%), Gaps = 59/426 (13%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGA 94
           E F         GH+     ++  A +++V+T +  +           IPVF   D+L A
Sbjct: 53  EIFV--------GHN--PQNIKN-ADVLIVSTAISKNNSEVLEAKKHKIPVFHRSDLLAA 101

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +               I + G+ GK+TT  M+       +K    +              
Sbjct: 102 IL---------CGGKSICVAGAHGKSTTSAMIGKVFCDAEKHPTVVLGGKVDY------- 145

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +  +  FG  E  ++   E         P I+VIT I   HL ++  +E I +A  +  
Sbjct: 146 -LNGNSIFGNGEFVIAEADESDGSFLKFNPFISVITNIEDDHLDHYLTVENIKNAFIKFI 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              +K     +   D+  E +K+    L   +  ++G S NA+++    +        +V
Sbjct: 205 NQTDKINGNTILCIDN--EGVKSILPKLDENSYITYGTSDNAEYKAINKRYIDSYMMFDV 262

Query: 275 QLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
             +      V     G H  +N L  L    I   D  T +K+L  F+  +      R  
Sbjct: 263 YHKESFLGTVSLMIPGTHNVRNALAALVTGLICGIDFKTIVKSLMEFNGVKR-----RFQ 317

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
           +       I + Y  +P  + + +    +      G+   +          +     + A
Sbjct: 318 IKYSGEVKIVDDYAHHPTEIMSTLKAAKEC-----GKHRVICAFQPHRYSRTNLLKYEFA 372

Query: 394 EVLSLYNI---SHVWLSGF------HVLALKDALPRS---IHVHYSETMDGLFLFIQSSL 441
                 +I   + ++ +G           L D +        + Y + M+ L   I++ +
Sbjct: 373 NAFDNADIIFITDIYSAGEKPINGISGKMLVDLIKEKHPTKTITYIKNMEDLPEAIKNEM 432

Query: 442 VDGDVV 447
              D++
Sbjct: 433 QKDDMI 438


>gi|289207544|ref|YP_003459610.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
 gi|288943175|gb|ADC70874.1| UDP-N-acetylmuramate [Thioalkalivibrio sp. K90mix]
          Length = 467

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/380 (17%), Positives = 120/380 (31%), Gaps = 28/380 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-- 153
             LA          ++A+ G+ GKTTT  +L   L     +           GVP     
Sbjct: 95  QWLAEHVL--HDRWVLAVAGTHGKTTTASLLAWILDHAGLSP-----GFLIGGVPGNFGV 147

Query: 154 ARMPVDVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +    +  F + E     S   + R      RP   V+  +   H   +  +  I     
Sbjct: 148 SARMGEAPFFVIEADEYDSAFFDKRAKFVHYRPRTLVLNNLEFDHADIYPDLAAIERQFH 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +   +   G I L   D+  E +        ++ I +   + +      +        +
Sbjct: 208 HLVRTIPGQGLILLPACDAALERVLEMGCWTPVERITTDPDTGDTVALAARPLNEDASEF 267

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +        V     G H   N L  LG        +   I AL  F     R +   
Sbjct: 268 EVLVNGVVQGRVAWEMTGQHNLSNALAALGAARHAGVPLAAGIAALPAFRGVRRRQELRA 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--H 389
                     + + +  +P +++  +  L        GR IAVL    E    +     H
Sbjct: 328 EIDGIR----VIDDFAHHPTAIRLTLEGLRG-RVVPGGRLIAVL----EPRSNTMRMGIH 378

Query: 390 ID-LAEVLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDV 446
            + L   L   + +H++     +    D L R     +  +  ++ L   I ++   GD 
Sbjct: 379 AEALGAALERADAAHLY-HAPDIDWSTDDLERQLGGQLAVARDIESLLQGILATARPGDT 437

Query: 447 VVVKSSNSCGFYRLINLLLE 466
           +V+  SN  GF  L   L+ 
Sbjct: 438 LVI-MSNG-GFDGLHQRLIA 455


>gi|158604928|gb|ABW74747.1| conserved hypothetical protein [Campylobacter concisus 13826]
          Length = 325

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 8/109 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            T  +L   I G  +       V   + ++++I       A+     D    I  A+++G
Sbjct: 1   MTIENLTHIINGQILNNPSISSVTSFAFEAKNIKRGY---ALIATQSD---QIAPAIKQG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++   D+  S     I    V  +  A+ KL     +       A+
Sbjct: 55  AYAIISEDDITPSDDE--IAFIKVASLQTAIIKLMRFEAIHKNIKFCAV 101


>gi|86516488|gb|ABC97930.1| MurD [Shigella boydii]
          Length = 154

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L       +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LA  L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LARYLNGDNV-RLYSFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV---KSS---------NSCGFYRLINLL 464
           V++    +S             F RL   L
Sbjct: 124 VLLSPACASLDQFKNFEQRGNEFARLAKEL 153


>gi|310830391|ref|YP_003965492.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309249858|gb|ADO59424.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/397 (15%), Positives = 117/397 (29%), Gaps = 35/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA +VV +T +                 L     LA   RL ++   IA+ G+ GKTTT
Sbjct: 62  AGADIVVYSTALSRDNVERVAAEELNIPTLHRSQMLA---RLLNERKGIAVAGAHGKTTT 118

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+ + +         I               +  +   G  E  ++   E        
Sbjct: 119 SSMIALVMERCNVDPTYIIGGEI--------TNLGTNAKAGKSEFVVAEADESDGSFLQY 170

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P   ++T I   HL N+ G      +    F G  +     +   D        +    
Sbjct: 171 HPWQGIVTNIEADHLENYDGDFNRLKSAYVQFLGQIQPDGAAIVCADDQN---IQEMLPQ 227

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               + ++G    AD+     +    + S+   +       +     G H   N + T+ 
Sbjct: 228 LQTRVITYGIEHEADYMATDIQLGDRRLSFTMNRKGTALGTIELSVPGKHNVYNAMATVI 287

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                    +     +  FH  + R +     +      L+ + Y  +P  + A +    
Sbjct: 288 SCLEAGIPFEQIAATIVEFHGAKRRFQ----VIGDLHDVLVVDDYAHHPTEIIATLQAAK 343

Query: 362 --------QISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVL 412
                      P    R   +L         +    I D+        I      G    
Sbjct: 344 STGKRIVAVFQPQRYTRTYFLLDQFSRAFSDADEVIIPDIYSPAGEKRIE-----GIDSQ 398

Query: 413 ALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L + +    + +  Y  + D +  ++  ++  GD+V
Sbjct: 399 KLVELIKTNSNKNAKYLPSKDEISSYLLDAVKPGDIV 435


>gi|170720131|ref|YP_001747819.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida W619]
 gi|229620051|sp|B1J3L3|MURC_PSEPW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169758134|gb|ACA71450.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida W619]
          Length = 482

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 147/427 (34%), Gaps = 55/427 (12%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGA 94
           E F         GH    +A    A ++VV++ +  +   ++      IPV         
Sbjct: 63  EIFV--------GHR-AENAAH--ADVLVVSSAINPANPEVATALERRIPVV----PRAE 107

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +  LA   R R     +A+ G+ GKTTT  +L    ++       +              
Sbjct: 108 M--LAELMRYRHG---VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRL---TAAGTN 159

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
                  + I E   S    +      ++P +AV+T I   H++ +     ++     E 
Sbjct: 160 AQLGTSRYLIAEADESDASFLH-----LQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   +  DD     +  +     +    ++G  + AD +     Q   Q+   
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRPTV----TYGFCEEADIRAINVSQKGMQTHFT 270

Query: 274 V-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V +   + +EV  +  G H   N L T+ I +      +  ++ LS F     R + Y  
Sbjct: 271 VLRRDREPLEVSVNMPGNHNVLNALATIAIATDEGISDEAIVQGLSGFQGVGRRFQVYGE 330

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +G   ++ + Y  +P  + A I  +    P        V+         ++  + D 
Sbjct: 331 LPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSR----RLVIVYQPHRYSRTRDLYDDF 386

Query: 393 AEVLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
            +VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L
Sbjct: 387 VQVLGDANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLL 446

Query: 442 VDGDVVV 448
             GD+++
Sbjct: 447 RAGDILL 453


>gi|219685663|ref|ZP_03540477.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
 gi|219672779|gb|EED29804.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii Far04]
          Length = 468

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 126/382 (32%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +V   L +L+           I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYPEV---LGELSRKHYS------IGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +                  GI ++ +    E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD-------FGDNSTIAGISDIFIVETCEYKKHFLHFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD     +K+K        I+SFG    +
Sbjct: 196 VDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSKI-NREDINIFSFGSRDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +FQ+      +E                       + +  +L     +      +    +
Sbjct: 255 NFQISNIVVKNEYFCFSFLGLHNIELRTVLFHNILNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +          KR    + +    +  + Y  +P  ++  +  +     +       +L
Sbjct: 315 VVKRVAKNYSGIKRRSEVIKEKKGIIYMDDYAHHPREIRDTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVL++ +I  +                   L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFDDFVEVLNVADILILHNIYLSNRENFNPDELSFKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|294338816|emb|CAZ87150.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) MurD [Thiomonas sp. 3As]
          Length = 514

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 95/360 (26%), Gaps = 25/360 (6%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IF 165
             I+AITG+ GKTT   +  + L     + A +    +   + +  AR+  D      + 
Sbjct: 120 PKIVAITGTNGKTTVTRLTGLMLERAGWSVA-VAGNISPSMLDVLQARLQADDLPAAWVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +           A +  I   HL     +   A+ KA IF      G + L
Sbjct: 179 ELSSFQLHGMEGFAADA----ATVLNITQDHLDWHGDMTAYAADKANIFGNQSAQGVMVL 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     ++     L    + +  +  +             ++  E            
Sbjct: 235 NCDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPRNRRGAAI 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              G          L    +    +       I+                         L
Sbjct: 295 SPQGAGQGLGRPGALPEARLQMQRLMPAEALRIQGAHNVANALAALALGDAVGAPLAPML 354

Query: 342 ID------ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFH 389
                   E +     ++   +  +        G  +A L  M         G+      
Sbjct: 355 HALREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAALAGMETPVVLIAGGDGKGQDF 414

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L    +        L G    A+   L       ++++++       +    GD  ++
Sbjct: 415 SPLRAQAARLR--AAVLIGRDAQAIAAELQGLAPTVFTQSLEQAVQRAATLAKTGDAALL 472


>gi|300702963|ref|YP_003744565.1| UDP-N-acetylmuramate--l-alanine ligase [Ralstonia solanacearum
           CFBP2957]
 gi|299070626|emb|CBJ41921.1| UDP-N-acetylmuramate--L-alanine ligase [Ralstonia solanacearum
           CFBP2957]
          Length = 483

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 77/405 (19%), Positives = 133/405 (32%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGF- 409
            A ++      P        VL         ++    D  +VL   +   ++ V+ +G  
Sbjct: 347 AATVAAARGAFPGR----RLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVYSAGEP 402

Query: 410 -----HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
                   AL  AL  +  +   + E ++ +   I  +  D DVV
Sbjct: 403 PIVAADGRALTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVV 447


>gi|331087235|ref|ZP_08336305.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408921|gb|EGG88382.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 127/392 (32%), Gaps = 37/392 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V  +     +     +P+          L +L          T IA++G+ GKTTT  
Sbjct: 77  AAVHADNPEFIAAKEHQLPML----TRAELLGQLMTNY-----KTPIAVSGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +              I             D  I E       E         P
Sbjct: 128 MISHILLAGDTDPTISVGGILKIIGGNIRVG---HSDVFITEAC-----EYTNSFLDFLP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  +   H+  F  +++I  +       L K GT+ +N + S +E + A       
Sbjct: 180 KIGIILNVEEDHMDFFKDLDDIRHSFHRFAALLPKDGTLIINSEISQYEQIIA----GLN 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++G   +AD+  +  +  +  +     +   + +            N+   L  + 
Sbjct: 236 CNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEH-NVSNALSAII 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAA 356
             T       K         G  +R+         T+ID+  +         + A     
Sbjct: 295 TGTLLGIDLEKIKKGLLSFTGTDRRFEYKGTLDGVTIIDDYAHHPTEIEATLSAAQHYPH 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             +     PH   R  A   +  +   L+ + H+ LA++ +      +   G    AL D
Sbjct: 355 REIWCIFQPHTYTRTKAFFHEFAQ--ALTLADHVILADIYAARETDTL---GMSSEALSD 409

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           A+       +Y  + D +  F++   + GD++
Sbjct: 410 AIRELGGDSYYFSSFDEIKNFVKEKCIHGDML 441


>gi|300722057|ref|YP_003711337.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628554|emb|CBJ89126.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 441

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 120/375 (32%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               + A I+AITGS GK+T   ++                   +IGVP     +     
Sbjct: 104 FCREATAPIVAITGSNGKSTVTTLVGEMAKEAGWQV----GVGGNIGVPALEL-LKKSCQ 158

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H+  +              EGL +  
Sbjct: 159 LYVLELSSFQL----ETTYSLKAAAATVLNVTEDHMVRY-------------PEGLPQYR 201

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L   D     +      L +          +       ++  SE   + V       
Sbjct: 202 AAKLRIYDQAKACIVNAQDQLTLPAGGEESCYISFGVDSGDYQLDSEHQQLVVNQCPVLA 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    + +++AL  +   + R    +    +     
Sbjct: 262 TRDMQLAGQHNYTNGLAALALADAVGIPREASLQALRTYSGLDHRF---QVVHMRDGIRW 318

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  S +AA+S L       EG    ++G     G+   +    L   +S  NI
Sbjct: 319 INDSKATNVGSTQAALSGL-----KVEGTLYLLVG-----GDGKSADFTPLKPDISGNNI 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L    P       +ETM+     I S LV GD+V++    +S      
Sbjct: 369 -RLYCFGRDGDQLAQLRPE--IAVLTETMEQAMREIASKLVAGDMVLLSPACASFDQFNG 425

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 426 FEHRGHEFARLAEEL 440


>gi|84516392|ref|ZP_01003751.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
 gi|84509428|gb|EAQ05886.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Loktanella
           vestfoldensis SKA53]
          Length = 470

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 112/345 (32%), Gaps = 30/345 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             ++A+TGS GK+TT  ++   L+   +          +IG  +       D +  + EL
Sbjct: 120 PRVVAVTGSNGKSTTSALIHHILAESGR----PAQLAGNIGRGVLDIAPARDGEVVVLEL 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                   R LT    P +AV+T ++P HL   +G     +AK  +F        +    
Sbjct: 176 SSYQTDLARALT----PDVAVLTNLSPDHLDRHAGHGGYFAAKRRLFAEGGPDRAVIGVD 231

Query: 228 DDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           ++        L        +  + S  K   A + +   K    +     Q+    +  +
Sbjct: 232 ENEGRYLANQLAQGVGDDRVVLVSSGQKLTEAAWSVFARKGFLSEYRHGRQVGSIDLRAI 291

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN      +   L         A+  +     R    +   ++G    +++
Sbjct: 292 AGLPGAHNHQNACAAYAVCRTLGLGPRAIEAAMQSYPGLPHRS---QLVADRGGVRFVND 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S   A+   ++I     G +        E G      H        L  ++  
Sbjct: 349 SKATNVDSAAKALQAFARIRWICGGLQ-------KEGGLDGLLPH--------LAQVAKA 393

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++ G         LP  +      TM        +    GDVV++
Sbjct: 394 YVIGREAADFARQLP-GVPTEVCTTMARAVALAAAEAEPGDVVLL 437


>gi|229588491|ref|YP_002870610.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
 gi|259509778|sp|C3KCT1|MURC_PSEFS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229360357|emb|CAY47214.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           SBW25]
          Length = 481

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 69/413 (16%), Positives = 140/413 (33%), Gaps = 43/413 (10%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH    +A +         V  +   VA+     IPV         +  LA   R R   
Sbjct: 67  GHR-AENAAEADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG- 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++    ++       +     +               + I E  
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEAD 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P +AV+T I   H++ +     ++     E    L   G   +  
Sbjct: 174 ESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +  +     +    ++G S++AD +    +Q   Q++  V    +    V   
Sbjct: 229 DDPVVREILPQVKRPTV----TYGFSEDADVRAINVRQEGMQTYFTVLRPDREPLDVSVN 284

Query: 288 IGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           +  +      +  + I +      +  ++ LS F     R + Y     +G   ++ + Y
Sbjct: 285 MPGNHNVLNSLATICIATDEGVSDEAIVEGLSRFAGVGRRFQVYGQLPVEGGDVMLVDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I  +    P        V+         ++  + D   VL+  N+     
Sbjct: 345 GHHPTEVAAVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVNVLADANVLLLME 400

Query: 404 VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G           L +++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPIVKPLLRAGDILL 453


>gi|199598140|ref|ZP_03211562.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
 gi|199590901|gb|EDY98985.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lactobacillus
           rhamnosus HN001]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 101/352 (28%), Gaps = 43/352 (12%)

Query: 132 SIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + + +        +IG+P++   +     D  + EL    L         + PHIAV+T
Sbjct: 133 MLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQL----CGIKTLHPHIAVLT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL          +AK  I           +N+D      L  +S A         
Sbjct: 189 NIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQ-------- 240

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                +  Q    +      W+                G H  +N L  +    +     
Sbjct: 241 -IVPFSRKQAAGARASLIDGWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAKLKGVSD 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L  F   + R +       +    + ++S   N  +   A++   Q      G 
Sbjct: 300 DAIREVLRTFSGVKHRIQYLETINGR---RVYNDSKATNVEAATVALNAFQQPIVWLAGG 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
               L  M  +              L   ++  + + G     +        I V  +E 
Sbjct: 357 LDRGLP-MDAL------------TPLVKKHVKSMVVFGQTAPLMAKIAKDAGIPVQKTEN 403

Query: 430 MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEEFP 469
           +         +   GDV+++    +S             F + ++ L +   
Sbjct: 404 VMTAVPLAYEASRPGDVILLSPAAASWDQYPNFEVRGDDFIKAVHSLQQNLE 455


>gi|51246749|ref|YP_066633.1| UDP-N-acetylmuramate-alanine ligase [Desulfotalea psychrophila
           LSv54]
 gi|59798231|sp|Q6AJ54|MURC_DESPS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50877786|emb|CAG37626.1| probable UDP-N-acetylmuramate-alanine ligase [Desulfotalea
           psychrophila LSv54]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 128/413 (30%), Gaps = 49/413 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           GH     A   GA +VV ++ +      +       IPV         +  LA   RL++
Sbjct: 56  GH---QAASCAGASVVVTSSAVAEDNPEVVQAREDKIPVI----PRAEM--LAELMRLKT 106

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IA+ GS GKT+T  ++   LS        +                  + DF + E
Sbjct: 107 FG--IAVAGSHGKTSTTSLIGCLLSQTGFDPTIVVGGKVDS---FGGNAKLGEGDFLVAE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           + P + V+T I   HL  ++ IE I        + +   G   + 
Sbjct: 162 ADES-----DGSFLKLSPVLEVVTNIDLEHLDYYTDIEHIKETFLSFIDKIPFYGAAIVC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVH 285
            DD     +  +        + ++G +  AD      +  + +S   V+       E+  
Sbjct: 217 LDDENVAAILPQVQK----RLITYGLTPQADVSADNLRFAAGRSTFRVRAAGEVLGEISV 272

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H   N L  + I   L         AL+ F   + R    +        T+ID+ 
Sbjct: 273 FPSGTHNVYNALAAVAIGLELEIPFGKIATALASFGGVQRRM---QHKGEGKGITVIDDY 329

Query: 346 YNA---------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
            +                    ++    PH   R  A+  +       +    +      
Sbjct: 330 AHHPTEIRASLKAIKETWPEKRLVVLFQPHRYSRTQALFEEFKTCFHQADCLIMTDIYEA 389

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           S   I      G     L +A+         +   +  L   +  +L +GD+V
Sbjct: 390 SESPIE-----GVSTEILLEAIKAHGQRYTRHIPEIASLATEVMPNLREGDLV 437


>gi|330811578|ref|YP_004356040.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379686|gb|AEA71036.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 486

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 138/413 (33%), Gaps = 43/413 (10%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH    +A           V  +   VA+     IPV         +  LA   R R   
Sbjct: 67  GHR-AENAANADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG- 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  ++    ++       +     +               + I E  
Sbjct: 119 --IAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEAD 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P +AV+T I   H++ +     ++     E    L   G   +  
Sbjct: 174 ESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHH 286
           DD     +             ++G  + AD +    +Q   Q++  V    +   +V  +
Sbjct: 229 DDPVVREILPLIKRP----TMTYGFGEEADVRAINVRQQGMQTFFTVLRPDREPLDVSVN 284

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L T+ I +      +  ++ LS F     R + Y      G   ++ + Y
Sbjct: 285 MPGNHNVLNALATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I  +    P        V+         ++  + D  +VL+  N+     
Sbjct: 345 GHHPTEVAAVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVQVLADANVLLLME 400

Query: 404 VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G           L  ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGDILL 453


>gi|117619646|ref|YP_858325.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561053|gb|ABK38001.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 427

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 123/375 (32%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  +IAITGS GK+T   ++   ++              +IG P     +   +D
Sbjct: 91  FVREAQVPVIAITGSNGKSTVTTLVGEMIAEAGLKV----GVGGNIGTPALEL-LKQPMD 145

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI +  +   
Sbjct: 146 LCVLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHSQH-- 199

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                       +L  +  A  +  +    +S   D       +   + W+ +  +    
Sbjct: 200 ------------ILINRDDAQTLPDVGQVWQSFGLDCNGYGRCELDGRHWLTLHGEPLLA 247

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  + +   +    +  ++ L  F     R    R          
Sbjct: 248 VDEMKIVGAHNQANALAAMALCDAVGIPREPQLRVLRRFEGLPHRA---RFVREVNGVRW 304

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +    ++ ++ +    +GR + + G   +  +          + L    I
Sbjct: 305 INDSKATNVGAT---LAAVAGVRESVKGRLLLLAGGQGKGQDFGP------VQALLGSQI 355

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
            H++  G     L     ++  V   +          +    GD V++    +S      
Sbjct: 356 DHMYCFGQDAEVLLALGEQTERVADLDAA---VAKAAADARPGDWVLLAPACASLDQFKS 412

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 413 FEARGDRFTELVQKL 427


>gi|317968396|ref|ZP_07969786.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0205]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 131/419 (31%), Gaps = 55/419 (13%)

Query: 59  HAVQKGAG---LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKAT 109
            A++ G      VVV++ + A+   L       + V+   DVL AL  +A          
Sbjct: 46  DAIRSGTSCPPAVVVSSAVPANNPELLEAERAGLKVWHRSDVLAAL--IAAQ-------P 96

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            I++ GS GKTTT  ++   L +   T     +    +           D    + E   
Sbjct: 97  SISVAGSHGKTTTSTLVASLLHA---TNHDPTAVIGGVVPAFASNGRNGDGPLLVAEADE 153

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S            +  + VIT +   H  ++S +  + +      +G E+      N D 
Sbjct: 154 S-----DGSLVKFQSWLGVITNLELDHTDHYSDLASLITTLQRFAKGSEQL---LANRDC 205

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                     H   I++      +  AD                 +      +      G
Sbjct: 206 PVLREHFQAHHWWSIQSSEGVDFAAIADELDGDRTL-----ATFYEQGEALGQFRLPLPG 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N    +    +         +A+        R               + + Y  +
Sbjct: 261 LHNLSNAAAAMAACRLHGVSFAELQRAVEGLQAPGRRFDYRGNW----CGRQVVDDYAHH 316

Query: 350 PASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---I 401
           P+ ++A +++   +     SP  E  +  ++         +  F  D A+ LS  +   I
Sbjct: 317 PSEVQATLAMARLMVSSGRSPLPEAPQRLLVVFQPHRYSRTAEFLSDFAQALSQADAVLI 376

Query: 402 SHVWLSGFH------VLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           + ++ +G          AL   + R    + V   + ++ L   I  +   GD+V+   
Sbjct: 377 APLYTAGEAPIPGISSAALAAEIQRIAPGLPVSAFDDLETLADAIGQTSQAGDLVLAMG 435


>gi|229825978|ref|ZP_04452047.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
 gi|229789720|gb|EEP25834.1| hypothetical protein GCWU000182_01342 [Abiotrophia defectiva ATCC
           49176]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 125/411 (30%), Gaps = 40/411 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +         L IP+         L ++    +       +A++G+ GKTTT  M
Sbjct: 78  AAIHADNPEFMEAKKLGIPMLERA---ECLGQIMSHYKNA-----VAVSGTHGKTTTTSM 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+      +                          +  I E       E         P 
Sbjct: 130 LSYVYLEAELDPTISVGGILSGIHGNMRLG---KSENFIMEAC-----EYADSFLHFTPT 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A++  +   HL  F  +E    +  +    L + G + +N +    E L    +   I 
Sbjct: 182 TAIVLNVEAEHLDFFGTLENERLSFTKFINLLPENGLLVVNNEIEGLENLIQNKNIRIIY 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                   +  D+  +          S+  +        V     G H   N L  +   
Sbjct: 242 YGLRPVNGREPDYTAKNITYNDFGFPSYELIVKGENKGLVELSVTGEHNVFNSLAVIAAA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYR--CALNQGFFTLIDESYNANPASMKAAISVLS 361
              ++     I    +    +      R      +     I + Y  +P  ++A +    
Sbjct: 302 LEPSSIYPKGIALEKIKQGIKKYTGTDRRFQYKGERDGYTIVDDYAHHPTEIRATLEAAK 361

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFH------VL 412
           ++          ++     +   +++F  + A VLS+ +I   + ++ +           
Sbjct: 362 RVK-----HNRLIVAFQPHLYSRTKTFLHEFATVLSMADIVVFAEIYAAREENHHDISSD 416

Query: 413 ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            +++ +  + H  ++ +T + +  F+  +   GD +++      G   ++ 
Sbjct: 417 NIREIMSENGHEAYFFKTFEEVENFLIHTCKPGD-LLIT----MGAGDIVK 462


>gi|146281469|ref|YP_001171622.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri A1501]
 gi|189029022|sp|A4VIH9|MURC_PSEU5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145569674|gb|ABP78780.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas stutzeri A1501]
 gi|327479644|gb|AEA82954.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas stutzeri DSM
           4166]
          Length = 485

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 76/405 (18%), Positives = 144/405 (35%), Gaps = 44/405 (10%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            GA ++VV++ + ++   ++      IPV         +  LA   R R     IA+ G+
Sbjct: 76  AGADVLVVSSAINSANPEVALALEQRIPVV----PRAEM--LAELMRYRHG---IAVAGT 126

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +L    ++       +                     + I E   S    + 
Sbjct: 127 HGKTTTTSLLASVFAAGGLDPTFVIGGRL---TAAGTNAQLGSSRYLIAEADESDASFLH 183

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +AV+T I   H+S +     ++     E    L   G   L  DD     +
Sbjct: 184 -----LQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVLCVDDPVVREI 238

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQ 294
             +          ++G S++AD +    +Q   +++  V   G    +V  H  G H   
Sbjct: 239 IPQIGRP----TTTYGFSEDADVRAINVRQEGMRTYFTVLRDGCEPLDVSVHMPGNHNVL 294

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+ I +    D +  ++ L+ F     R + Y      G   ++ + Y  +P  + 
Sbjct: 295 NALATIAIATDEGIDDEAIVQGLAEFAGVGRRFQVYGNLPVDGGSVMLVDDYGHHPREVA 354

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF-- 409
           A I  +    P        V+         ++  + D  +VL   N+     V+ +G   
Sbjct: 355 AVIKAVRGGWPER----RLVMVYQPHRYSRTRDLYDDFVQVLGESNVLLLMEVYPAGEEP 410

Query: 410 ----HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                   L  ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 411 IPGADSRQLCHSIRQRGQLDPIYVERGVDLAPLVKPLLRAGDILL 455


>gi|78184101|ref|YP_376536.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9902]
 gi|118595699|sp|Q3AZI5|MURD_SYNS9 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78168395|gb|ABB25492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9902]
          Length = 462

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 102/360 (28%), Gaps = 37/360 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR- 155
           +LA  A        + ITG+ GKTT   +L+  L          G+            R 
Sbjct: 101 ELAWEALN--DIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGNMGVSAADMALKIRR 158

Query: 156 -MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D+ + EL    +         + P I + TT+ P HL     +E   + K  + 
Sbjct: 159 GETPKPDWLVMELSSYQI----EAGPNLAPSIGIWTTLTPDHLERHGTLEAYRAIKHSLL 214

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +          + D S       +   +              D     +      +    
Sbjct: 215 QRSSLAIFNGDDADLSAHRPSLKRGMWVKAAP-------PCHDDPPADFWIDDAGTVQAR 267

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           +        V    G H  QN+L+     + +  + +   + L  F        R     
Sbjct: 268 EGGAMFPAKVLAMPGAHNRQNLLLVTAAAAQIGLNAEQIAQGLESFPGV---PHRLENLG 324

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +     + ++S   N  +    +  ++       G  + + G   + G  +       ++
Sbjct: 325 STSSADVFNDSKATNYDAAAVGLQAMA-------GPVVVLAGGQTKRGNATGWLAELKSK 377

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQ---SSLVDGDVVV 448
             +      V L G     L   + +S     VH    +           S L    +++
Sbjct: 378 ACA------VVLFGAGAEELDALIRQSNYQGQVHRCTDLSAAVAIAVRATSELQASSLLL 431


>gi|261253809|ref|ZP_05946382.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
 gi|260937200|gb|EEX93189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio orientalis
           CIP 102891]
          Length = 440

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 121/370 (32%), Gaps = 51/370 (13%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +    +IAITGS GK+T  +       +             +IGVP           + +
Sbjct: 107 QVDKPVIAITGSNGKSTVTDWTGCVAKASGLKV----GVGGNIGVPALDLLQLDADLY-V 161

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L      T  ++P  A    ++  H+  + G+ +   AK  IF+  +      
Sbjct: 162 LELSSFQL----ETTSSLKPAAATFLNLSEDHMDRYDGMSDYRQAKLRIFQQAKTC---- 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                    ++ A           +  +    +          +  ++ +  +       
Sbjct: 214 ---------VVNADDTQTYPDDDRNVVEFSLVEQTRYHLVTEGDVEYLAIADRKLCPTQA 264

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N L+ L +++    D+ + + AL  ++    R    +   +      +++
Sbjct: 265 LSLVGRHNVANALVVLALLTESGVDITSGLDALKSYNGLTHRC---QVVADNHGVKWVND 321

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N AS  AA++ L             ++G + +  + S     +L  VLS  N+  +
Sbjct: 322 SKATNVASTLAALAGLELAGK-----LYLLVGGVGKGADFS-----ELKPVLSSLNV-QL 370

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS--------- 452
              G         +P         +M  +  ++   +  GD+V++    +S         
Sbjct: 371 CCFGEDGNEF---VPLHPSAKSFTSMQEIVEWLAPQVESGDMVLLSPACASFDQFNNFMA 427

Query: 453 NSCGFYRLIN 462
               F  L  
Sbjct: 428 RGDAFTELAK 437


>gi|222530360|ref|YP_002574242.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
 gi|254763736|sp|B9MND8|MURC_ANATD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|222457207|gb|ACM61469.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 117/365 (32%), Gaps = 34/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +I I+G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMKDFKN-----VITISGTHGKTTTTSMIGYILKKANYN---PTVLVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKEYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G + +NYDD   + +  + +   I           AD           +  +
Sbjct: 199 FAQKIPTSGFLVVNYDDKNVKDIINQLNTQIICISTKEKTDIFADNISCSDGYY--EFDV 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +  +  G+H   N L    + S L  +  T  +ALS F     R +    
Sbjct: 257 KNNNDEILAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEQALSEFRGASRRLE---- 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQI---------SPHGEGRRIAVLGDMCEMGE 383
            + +     + + Y  +P  +KA ++ L +I          PH   R   +L +  E  +
Sbjct: 313 KVGEFNGIYLYDDYAHHPTEIKATLATLKKISEGKVLAIFQPHTFSRLKTLLNEFAESLQ 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
           L+    +         N+      G     L   L    I   Y    + +  +      
Sbjct: 373 LADKVIVTDVYAAREKNV-----FGITSEKLYLKLKEIGIDCEYISNFEDIACYAVKEAK 427

Query: 443 DGDVV 447
            GD++
Sbjct: 428 KGDII 432


>gi|170758367|ref|YP_001788481.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405356|gb|ACA53767.1| FolC bifunctional protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 429

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 104/314 (33%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKKDTYNIYLSLLGEHQIKNCITVILALEKLMKLGIKIEKMHIISAIKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFRYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G +   L    L  +    + E     +   +S  
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGENSKELMHIVLKHNESCEHLEDYKECYDKAKSYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|91228830|ref|ZP_01262736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
 gi|91187601|gb|EAS73927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrio alginolyticus 12G01]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 113/371 (30%), Gaps = 37/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPRK 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +         ++  +    +   +  K   + S  +V LQG+  +V     
Sbjct: 223 DQALADVLERGC-------WTEKQFSGENGDWQAHKLVLDGSKFDVALQGE--KVGTVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 274 NLVGDHNVDNALMAIAAARHVGVTPDLACQALGRFINTKRRLELKGEEQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   ++V    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLAESL------HSADEVF 384

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY-- 458
           L         V  + D    +        +D     I      GD ++V  SN  GF   
Sbjct: 385 LFQPDNIEWSVQDIAD--QCTQPAFVDADIDNFVAKIVERARPGDQILV-MSNG-GFSGI 440

Query: 459 --RLINLLLEE 467
             +L+  L ++
Sbjct: 441 HGKLLEQLKQK 451


>gi|121728372|ref|ZP_01681401.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|147674702|ref|YP_001217905.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           cholerae O395]
 gi|262168384|ref|ZP_06036081.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
 gi|172047587|sp|A5F5N1|MURD_VIBC3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|121629363|gb|EAX61794.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           V52]
 gi|146316585|gb|ABQ21124.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
 gi|262023276|gb|EEY41980.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           RC27]
          Length = 440

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 153/439 (34%), Gaps = 83/439 (18%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILH-----AVQKG---------AGLVVVN----- 71
            ID+R I P +                       A+ +G         A LVV N     
Sbjct: 37  VIDTREIPPGQ----------------EQLSSDVALHRGGWNLEWLLNADLVVTNPGIAL 80

Query: 72  -TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +  + +  IPV  V D+     +L           +IAITGS GK+T  ++  +  
Sbjct: 81  ATPEIQQVLAAGIPV--VGDI-----ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLA 130

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++         +   +IGVP     +  DV+  + EL    L      T  ++   A   
Sbjct: 131 NAAGV----KAAVGGNIGVPALDL-ISPDVELYVLELSSFQL----ETTSSLKLKAAAFL 181

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  H+  + G+ +   AK  IF+  E       +           +    G++    F
Sbjct: 182 NLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQF 241

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                         Q   + ++  + +          +G H   N+L  L ++     + 
Sbjct: 242 SL-----------AQHQGREYLFARDEAVMACAELSLVGRHNVTNVLTVLALLDSAGVNF 290

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A+ AL  +     R    +   +      +++S   N AS  AA+S L       EG+
Sbjct: 291 RLALDALKSYTGLTHRC---QVVADNHGIKWVNDSKATNVASTLAALSGL-----KIEGQ 342

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              ++G + +  + +      LA VL+   +  +   G         +P      + ++M
Sbjct: 343 LYLLVGGVGKGADFTP-----LAPVLATLPV-QLCCFGVDG---HQFMPLHPSARFYDSM 393

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           + +   I+  L  GD+V++
Sbjct: 394 ESIIRSIRPQLKSGDMVLL 412


>gi|78213668|ref|YP_382447.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9605]
 gi|118595700|sp|Q3AHP0|MURD_SYNSC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|78198127|gb|ABB35892.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9605]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 113/391 (28%), Gaps = 47/391 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTL 153
            ++  A     +   I ITG+ GKTT   +L+  L +   T    G+             
Sbjct: 98  GEMDTAWDALQQIPWIGITGTNGKTTVTHLLSHVLEAAGLTAPMGGNIGLSAAELACQIG 157

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
           +      D+ + EL    +         V P I + TT+ P HL     +E   + K  +
Sbjct: 158 SGAKPRPDWLVMELSSYQI----EAAPAVAPKIGIWTTLTPDHLERHGSLEAYRAIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E  E                L+ +  +    T  S  +  + D Q        E     
Sbjct: 214 LERSECALFNA------DDPDLRQQRSSWNRGTWVS-SEGAHPDNQPADLWIDDEGMVRN 266

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +      V    G H  QN+L+                 AL  F     R       
Sbjct: 267 NTTR-LFAADVLAMPGRHNRQNLLLVTAAALEAGLSPQQIADALRTFPGVPHR---LEQL 322

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 ++ ++S   N  + +  +  +        G  + + G   + G+ S        
Sbjct: 323 GTLAGASVFNDSKATNYDAAEVGLRAVQ-------GPVVVLAGGQTKQGDASGWLKQ--- 372

Query: 394 EVLSLYNISHVWLSG---FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VV 448
                     + L G     + +L  A      +     ++      + ++       ++
Sbjct: 373 ---LQSKACSLILFGAGADELASLAKAAGYPGELLQCPELESAVNLAEGAVQRHQASSLL 429

Query: 449 V---KSS---------NSCGFYRLINLLLEE 467
           +    +S             F  LIN LL+E
Sbjct: 430 LSPACASFDQYRDFEARGEHFRTLINPLLDE 460


>gi|304413641|ref|ZP_07395085.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
 gi|304283732|gb|EFL92126.1| UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase [Candidatus
           Regiella insecticola LSR1]
          Length = 509

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 132/412 (32%), Gaps = 53/412 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A L+V +  +  +   L+     V+  L  +  + +  R   +  I+AITGS GK+T   
Sbjct: 96  ADLIVASPGVALADPLLNQA---VEAGLEVIGDIELFCREN-QVPIVAITGSNGKSTVTT 151

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           +L     +             +IG+P     +       + EL    L      T+ ++ 
Sbjct: 152 LLGEMARNAGWQV----GVGGNIGIPALTL-LKQKYQLIVLELSSFQL----ETTYSLQA 202

Query: 185 HIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL--------- 234
            +A I  I+  H   +   +E+  +AK  I+E          +      +          
Sbjct: 203 QVATILNISEDHSDRYPQGLEQYQAAKLRIYENAHTCVVNVDDALTKPKQDTNAHYIPTV 262

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           L+  +   G +T        +A+ + ++      + +    +      +        +  
Sbjct: 263 LQVAARRPGRETDERRQLRDSANARSQQRGSFEGEGYSSFGVDVGDYHLHKQQNTVWLQA 322

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----------------KRYRCALNQG 337
           +    L    +        I AL+     +  G                  R++      
Sbjct: 323 HGEKVLETSKMKLCGRHNHINALAALALADAAGIPRSSSLAVLTTYSRLAHRFQSVFKNK 382

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             + I++S   N  S KAA+  L+      EG    +LG   +  + S        E + 
Sbjct: 383 GISWINDSKATNVGSTKAALEGLAI-----EGTLYLLLGGDGKSADFSPLLPFLQGERI- 436

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++  G     L    P        +T+      +   LV GD+V++
Sbjct: 437 -----RIYCFGRDGQKLAQLRPEISQCT--DTLQQAMRLLAPQLVTGDLVLL 481


>gi|254495866|ref|ZP_05108776.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
 gi|254354902|gb|EET13527.1| UDP-N-acetylmuramate:L-alanine ligase MurC [Legionella drancourtii
           LLAP12]
          Length = 458

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/409 (15%), Positives = 133/409 (32%), Gaps = 47/409 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA +VV ++ +  +   +       IPV        A+  LA   R R     IA+ G+
Sbjct: 62  QGADVVVRSSAVGMNNPEVVAAREQLIPVI----PRAAM--LAELMRFRHG---IAVAGT 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +++  L+      + +     +      +        + + E   S      
Sbjct: 113 HGKTTTTSLVSSLLAEGGLDPSFVIGGKLNS---AGVNAKLGQSPYFVVEADES-----D 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++P +A++T I   H+S +    +++ +   E    L   G   +  DD     +
Sbjct: 165 ASFLFLKPMMAIVTNIDADHMSTYEDNFDKLRTTFLEFLHHLPFYGLAVVCTDDPEVRNI 224

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   +    ++G +  A ++   W Q    S   V        +            
Sbjct: 225 LQSIERPTL----TYGFNDEAHYRAVDWTQNELLSEFTVARPAPYPPLNICFQYPGRHNV 280

Query: 296 MLMTLGIVSILT--ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +     I             + AL+ F     R +       +    L+ + Y  +P  +
Sbjct: 281 LNALAAIAIATELGVSDAAIVSALAKFQGVGRRFQMLGEKHFERGSALVVDDYGHHPQEI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
            + I    ++ P+     +            +QS H    +VLSL     ++L       
Sbjct: 341 FSTIDAFRRVWPNKRLVHVF----QPHRYSRTQSLHDQFVDVLSLS--DKLFLFDIYSAG 394

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                G     L   +  +           L + +   ++DGDV++++ 
Sbjct: 395 EAAIPGISSEGLAQKIRGNDKNVTMVNEQSLKMQLDEFILDGDVILIQG 443


>gi|254382594|ref|ZP_04997952.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
 gi|194341497|gb|EDX22463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           Mg1]
          Length = 481

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 67/438 (15%), Positives = 123/438 (28%), Gaps = 50/438 (11%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSK 107
           DG       + +G  LVV +          +      V  V DV     ++A   R  + 
Sbjct: 64  DG-AHAGEVLPEGTELVVTSPGWKPDSPLFAAAAEAGVDVVGDV-----EIAWQLRGSTP 117

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDVDFGIFE 166
               A   ++  T  K   T  L+SI K      +   +IG P+        + D    E
Sbjct: 118 GRKAAPWLAITGTNGKTTTTQMLASILKAAGLRTAAVGNIGTPIVDVVTGEEEYDVLAVE 177

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         +R H A +  +AP HL     +E  A+ K  I+EG        + 
Sbjct: 178 LSSYQLHWA----PSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYEGNTVACVYNVA 233

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +   + +A          ++ G    +   +       +++++E + +         
Sbjct: 234 DRATEDLVGEADVEEGCRAIGFTLGAPGPSMLGVVDGILV-DRAFVENRQKNAQELAEVK 292

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +      N+   L   ++  A                    R       G    +D+S 
Sbjct: 293 DVNPPAPHNIANALAAAALARAFGVEPRAVRDGLRNFRPDAHRVAHVDEVGGVVYVDDSK 352

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  + +A+++    +     G            G              S   +  V L
Sbjct: 353 ATNTHAAEASLAAFETVVWIAGG---------LAKGATFDELVRK-----SAKGLRGVVL 398

Query: 407 SGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVV---KSS--- 452
            G     + +AL R         ++                    GD V++    +S   
Sbjct: 399 IGADRALIAEALARHAPEVPVVDLERTDTGAMLAAVREAARLAEPGDTVLLAPACASMDM 458

Query: 453 ------NSCGFYRLINLL 464
                     F   +  L
Sbjct: 459 FANYNKRGDAFADAVREL 476


>gi|258593035|emb|CBE69346.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme [NC10
           bacterium 'Dutch sediment']
          Length = 475

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 115/389 (29%), Gaps = 42/389 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +  + +IPV         L +L            +A+ G+ GKTTT  M+   L
Sbjct: 77  ENPEIVAAKAHAIPVIQRA---EMLAELMRMKYG------VAVAGTHGKTTTTSMVATVL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +               +  +   G  E  ++   E       + P IAV+T
Sbjct: 128 AKAGLDPTVVIGGRLD--------ALGSNAKLGRGEFMVAEADESDGSFLKLAPTIAVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
           T+   HL  +  +++I     E    +   G+  L  D      L           + S+
Sbjct: 180 TVDAEHLDYYRDLQQIKETFLEFINKVPFYGSAILCLDQEHIRDLLPMVQK----RVVSY 235

Query: 251 GKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G    AD             ++          EV     G H   N L  + +   L  +
Sbjct: 236 GCHTQADLMAEGVSLTGLSSTFKVRFKGEPLGEVQLRIPGVHNVSNALAAMAVGLELDIE 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ------- 362
                 AL  F     R +            ++ + Y  +PA ++A +            
Sbjct: 296 FAAIRTALGEFSGVVRRFQ----VKGSPQDIMVVDDYAHHPAEIQATLKAARDGFGRRLI 351

Query: 363 --ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-- 418
               PH   R   +L +     + +    I          I     +G     + D +  
Sbjct: 352 VIFQPHRYSRTQRLLPEFASAFDFADQVIITGIYPAGETPI-----AGVSGRQIADGVVV 406

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +   V Y E  + +   +      GD+V
Sbjct: 407 RKGPKVLYVERKEEIPDRVIELARPGDLV 435


>gi|268608183|ref|ZP_06141910.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Ruminococcus
           flavefaciens FD-1]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 102/348 (29%), Gaps = 43/348 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                +  II ITG+ GK+T   ++   L    +          +IG+P+      V+ D
Sbjct: 105 FFTVFRDQIIGITGTKGKSTVTSLIYHILHESGRD----TRIAGNIGIPVFDIAEGVNDD 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             +       L   +     V P  AV   +   HL ++  +E   +AK  I+       
Sbjct: 161 TIVV----CELSCHQLEYMTVSPAKAVFLNLYEEHLDHYGTMENYYNAKKNIYLHQNPYD 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T++              +  L    I S   + +  F          + +     + +  
Sbjct: 217 TLW-------------INSKLVTDDIPSVTVTVSDKFNNADVFIIKSKVYDSDDGELEIP 263

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N+ +   +   L +  D     +S                     + 
Sbjct: 264 VKKIKLLGSHNYYNIAIAWDVCRNLVSRNDFNKALMSFDPLPHRL----EPVGTFKGISW 319

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S +   A+   A+  +             ++G M          ++ L + L+   +
Sbjct: 320 YDDSISTACATAIEALKSV-------PDVETILIGGM-----DRGIDYMPLVDYLNKSTV 367

Query: 402 SHVWLSGFHVLALK-----DALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           + +         +      +       VHY E ++           +G
Sbjct: 368 N-IICMEASGRRVYSLIKSEQFSAPERVHYVEHLEDAVKLASEITPEG 414


>gi|182677686|ref|YP_001831832.1| UDP-N-acetylmuramate--L-alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|229486470|sp|B2IGG1|MURC_BEII9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|182633569|gb|ACB94343.1| UDP-N-acetylmuramate--alanine ligase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 476

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 80/410 (19%), Positives = 128/410 (31%), Gaps = 54/410 (13%)

Query: 65  AGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A +VVV+T +      L       +  V  A   LA   RL+     +A+ G+ GKTTT 
Sbjct: 67  AAVVVVSTAIKRDNPELVHARELRLPVVRRA-EMLAELMRLKQ---CVAVAGTHGKTTTT 122

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++   L + K     I     +              D+ + E   S           + 
Sbjct: 123 SLVATLLDAGKFDPTVINGGIIN---AYGTNARLGAGDWMVVEADES-----DGTFLKLP 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             IA++T I P HL +F   + I  A     E +   G   +  D    + L      + 
Sbjct: 175 ADIAIVTNIDPEHLDHFKTFDAIKQAFRAFIENIPFYGFAVMCLDHPVVQELV---GTIE 231

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWME------------VQLQGKSMEVVHHGIGYH 291
            + I ++G++  AD +L         S                  + +  +++    G H
Sbjct: 232 DRRIITYGENPQADMRLVDVNLDGGMSRFNVVVRDRKAGQGKRFEERRVEDLLMPMPGLH 291

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
            A N    L +   L    D    AL  F   + R  R            I + Y  +P 
Sbjct: 292 NALNATAALSVALQLGMSDDAIRSALRGFGGVKRRFTRTGEWNGA----QIFDDYGHHPV 347

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---- 407
            + A +          +G+ IAV+             H    E  S +N + V +     
Sbjct: 348 EIAAVLRAA---RASTKGQVIAVV-----QPHRYTRLHSLFNEFASCFNDADVVIVADVY 399

Query: 408 --------GFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                   G     L  AL              + L   I+S    GD V
Sbjct: 400 AAGEPPIDGADKEHLMRALKAFGHRQAMVLRAPEDLPALIRSLAHPGDYV 449


>gi|227874167|ref|ZP_03992371.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
 gi|227839988|gb|EEJ50414.1| UDP-N-acetylmuramate--L-alanine ligase [Oribacterium sinus F0268]
          Length = 466

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/410 (17%), Positives = 131/410 (31%), Gaps = 47/410 (11%)

Query: 66  GLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
              +    +    +    IP+    D    L ++         AT I + G+ GKTTT  
Sbjct: 76  TAAISEDNEEFQEVKRRGIPMMTRAD---LLGRIMQNY-----ATAINVAGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L    K             V   +  +  ++  G  ++ ++   E     H   P
Sbjct: 128 MIGEILMEAAKDPTI--------TVGGMMKDIGGNLRVGQSDIFLAEACEYTNSFHSFFP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAVI  +   HL  F  I EI  +     E L + G + +N D   +E          I
Sbjct: 180 SIAVILNVEADHLDFFKDINEIRDSFKTFIERLPEDGLVVINKDIPHYEYFLEDLGGRKI 239

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
            T         A+F           S+   +      +V     G H   N L  + +  
Sbjct: 240 ITFGHGDADYTANFISYDHYARP--SFTLFEHGEDRGKVTLSVTGEHNIYNSLSAIAVAR 297

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L    +   +AL  F   + R +R            I + Y  +P  + A I+   +  
Sbjct: 298 YLGISFEDIKEALHRFSGTDRRFQRKGKINGF----TIIDDYAHHPQEIAATIAAAQKYP 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVLA 413
                 R   +         +++   D A  L+      + L            G     
Sbjct: 354 -----HRKLWIVFQPHTYSRTKALMEDFAGALAQA--DEIILADIYAAREKNTVGISSDD 406

Query: 414 LKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L+   L ++ +V+Y      +  +I   + +GD +++      G   +++
Sbjct: 407 LRKLMLSQNTNVYYIPDFPSIEKYILEHVKEGD-LLIT----MGAGNIVD 451


>gi|222149138|ref|YP_002550095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           vitis S4]
 gi|221736123|gb|ACM37086.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Agrobacterium
           vitis S4]
          Length = 471

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 56/389 (14%), Positives = 107/389 (27%), Gaps = 41/389 (10%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITG 115
           G    V++  +  +      P + VD    A    +  + +  R R         IAITG
Sbjct: 65  GLSAFVLSPGVPLTHPK---PHWTVDLARAAGVEIIGDIELFVRERQAKAPDCPFIAITG 121

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   L               +IG  +     P    + + E     +   
Sbjct: 122 TNGKSTTTALIGHILRHNGYDVQIG----GNIGTAVLTLEPPAPDRYYVVECSSYQID-- 175

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L   + P   ++  + P HL     +E  A+ K  +  G +       +         
Sbjct: 176 --LAPGIDPTAGILLNLTPDHLDRHGSMENYAAVKERLVSGSDVAIIGVDDDYCLEIAKR 233

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             +  A       S G+           +           +   +      G        
Sbjct: 234 LEE--AGKEVVRISKGQPLTDGLYNDGQRIVRGSGGAAEVIADLNGIATLRGSHNAQNAA 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +   +   L+ D        +      G   R +    +G    +++S   N  +   
Sbjct: 292 AAIAACMAVGLSKDQIQ-----AGLSSFAGLKHRMQPVGRRGHVVFVNDSKATNAEASAP 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A+S   +I     G      G +  +  L                I+  +L G       
Sbjct: 347 ALSSYERIYWIAGGLPKQ--GGIASLSPLFPR-------------IAKAYLIGEAASGFA 391

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDG 444
             L  ++    S T+D       +   D 
Sbjct: 392 ATLGNAVAYEISGTLDRALAHASADAQDD 420


>gi|33865066|ref|NP_896625.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. WH 8102]
 gi|60390530|sp|Q7U8T1|MURD_SYNPX RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|33638750|emb|CAE07045.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8102]
          Length = 462

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 112/389 (28%), Gaps = 47/389 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            ++AVA         + ITG+ GKTT   +L+  L          G+            +
Sbjct: 98  GEMAVAWDALKHIPWVGITGTNGKTTVTHLLSHVLCQAGLAAPMGGNMGVSAAEMALNLQ 157

Query: 156 MPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                  D+ + EL    +   +     +RP I + TT+ P HL     +E   + K  +
Sbjct: 158 QEHTTAPDWLVMELSSYQIEAAKR----IRPRIGIWTTLTPDHLERHGTVEAYRAIKRGL 213

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
               E++     N DD      +         +  S     +             + W+ 
Sbjct: 214 L---ERSDHAIFNADDPDLRQQRQSWTGGTWVSAESAQPDGHPADLWIN-----GKGWVC 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + Q           G H  QN+L+       +     + +  L  F     R       
Sbjct: 266 DRSQPLFPAEALAMPGAHNRQNLLLVTAAARQIGLSPASIVAGLRSFPGVPHR---LEPV 322

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G   + ++S   N  +    +  +        G  + + G   + G+ +        
Sbjct: 323 GRIGNAQVFNDSKATNYDAAAVGLKAMQ-------GPVVVLAGGSTKQGDATGWL----- 370

Query: 394 EVLSLYNISHVWLSGFHVLALK---DALPRSIHVHYSETMDGLFLFIQSSLVD-GDV-VV 448
           E L+      V L G     L         +  +     +         S    G   ++
Sbjct: 371 EELNRKAC-AVVLFGAGTEELHGLITGANFTGELTRRTDLTSAVEEAVRSAEALGATSLL 429

Query: 449 V---KSS---------NSCGFYRLINLLL 465
           +    +S             F +LI+ + 
Sbjct: 430 LSPACASFDQYRDFEARGDHFKQLIHQVQ 458


>gi|227014297|gb|ACP10507.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           O395]
          Length = 467

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 81/439 (18%), Positives = 153/439 (34%), Gaps = 83/439 (18%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILH-----AVQKG---------AGLVVVN----- 71
            ID+R I P +                       A+ +G         A LVV N     
Sbjct: 64  VIDTREIPPGQ----------------EQLSSDVALHRGGWNLEWLLNADLVVTNPGIAL 107

Query: 72  -TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
            T  +  + +  IPV  V D+     +L           +IAITGS GK+T  ++  +  
Sbjct: 108 ATPEIQQVLAAGIPV--VGDI-----ELFAWH---VDTPVIAITGSNGKSTVTDLSGVLA 157

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++         +   +IGVP     +  DV+  + EL    L      T  ++   A   
Sbjct: 158 NAAGV----KAAVGGNIGVPALDL-ISPDVELYVLELSSFQL----ETTSSLKLKAAAFL 208

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            ++  H+  + G+ +   AK  IF+  E       +           +    G++    F
Sbjct: 209 NLSEDHMDRYQGMGDYRQAKLRIFDHAETAVVNADDTQTFPDHAAHLQVVTFGVEQAAQF 268

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                         Q   + ++  + +          +G H   N+L  L ++     + 
Sbjct: 269 SL-----------AQHQGREYLFARDEAVMACAELSLVGRHNVTNVLTVLALLDSAGVNF 317

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A+ AL  +     R    +   +      +++S   N AS  AA+S L       EG+
Sbjct: 318 RLALDALKSYTGLTHRC---QVVADNHGIKWVNDSKATNVASTLAALSGL-----KIEGQ 369

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              ++G + +  + +      LA VL+   +  +   G         +P      + ++M
Sbjct: 370 LYLLVGGVGKGADFTP-----LAPVLATLPV-QLCCFGVDG---HQFMPLHPSARFYDSM 420

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           + +   I+  L  GD+V++
Sbjct: 421 ESIIRSIRPQLKSGDMVLL 439


>gi|169335453|ref|ZP_02862646.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258191|gb|EDS72157.1| hypothetical protein ANASTE_01867 [Anaerofustis stercorihominis DSM
           17244]
          Length = 466

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 113/388 (29%), Gaps = 34/388 (8%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L  ++           IA++G+ GKTTT  ++++   +     +            +  
Sbjct: 101 FLGLISRYY-----KRTIAVSGTHGKTTTSSLMSLVFLNADLDPSISIGGTLKK---ING 152

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAE 212
                D D+ + E       E        R  +  I  I   HL  F  GIE+I  +  +
Sbjct: 153 NSRVGDSDYFVIEAC-----EFVDSFLHSRHFVGTIQNIEKDHLDYFTGGIEQIKESFRK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             E   K G + +N DD     +           I   G S + DF  +        +  
Sbjct: 208 FAEITPKDGMLVVNGDDENVLDILD----GLECKIVKAGLSDSNDFVAKNITYDKFGNPN 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +G                 +     +       +D  +   S       + +  + 
Sbjct: 264 FDVYKGGEFYHKFELNIPGEHNVLNALSVVAVSDFFMIDKEVINDSFKEFTGAKRRFEKR 323

Query: 333 ALNQGFFTLIDESYNANPASMKAA-------ISVLSQISPHGEGRRIAVLGDMCEMGELS 385
            +      + D +++     +            +     PH   R   +  +  E  + +
Sbjct: 324 GIVNDITVIEDYAHHPTELKVTIDACKNYEHNKLFVIFQPHTYSRTFLLFDEFVEAMKGA 383

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVD 443
                 +   +      + W    +   + + +    +I          +  ++ ++   
Sbjct: 384 DEL---ILNDIYSDREDNEWNI--YSEDIANKVIEKYNIPSRVISEFSDIRDYVVNNAKP 438

Query: 444 GDVVVVKSSNSCG--FYRLINLLLEEFP 469
           GD V+V  S S     Y ++  L E + 
Sbjct: 439 GDFVLVAGSQSINQVAYDIVEKLKEVYK 466


>gi|258508277|ref|YP_003171028.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
 gi|257148204|emb|CAR87177.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactobacillus
           rhamnosus GG]
 gi|259649594|dbj|BAI41756.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus GG]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 101/352 (28%), Gaps = 43/352 (12%)

Query: 132 SIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + + +        +IG+P++   +     D  + EL    L         + PHIAV+T
Sbjct: 133 MLNQQWPHHAFDAGNIGIPVSQVAQKAGKEDTIVAELSSFQL----CGIKTLHPHIAVLT 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL          +AK  I           +N+D      L  +S A         
Sbjct: 189 NIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQ-------- 240

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                +  Q    +      W+                G H  +N L  +    +     
Sbjct: 241 -IVPFSRKQAAGARASLIDGWLTFDGDKIMPASDLQIPGLHNIENALAAIAAAKLKGVSD 299

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L  F   + R +       +    + ++S   N  +   A++   Q      G 
Sbjct: 300 DAIREVLRTFSGVKHRIQYLETINGR---RVYNDSKATNVEAATVALNAFQQPIVWLAGG 356

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET 429
               L  M  +              L   ++  + + G     +        + V  +E 
Sbjct: 357 LDRGLP-MDAL------------TPLVKKHVKSMVVFGQTASLMAKIAKDAGVPVQKTEN 403

Query: 430 MDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINLLLEEFP 469
           +         +   GDV+++    +S             F + ++ L +   
Sbjct: 404 VMTAVPLAYEASRPGDVILLSPAAASWDQYPNFEVRGDDFIKAVHSLQQNLE 455


>gi|304389585|ref|ZP_07371547.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
 gi|304327138|gb|EFL94374.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Mobiluncus
           curtisii subsp. curtisii ATCC 35241]
          Length = 495

 Score = 48.7 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 75/441 (17%), Positives = 137/441 (31%), Gaps = 59/441 (13%)

Query: 58  LHAVQKGAGLVVVN-----TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATII 111
             A  KG  L +V+      + +  +   S P++  V+     L      A        +
Sbjct: 68  EAAAAKGHKLFIVSPGIAPHNPLYRLPEASAPMWSEVE-----LAWQIQEAIGNRNCKWL 122

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITG+ GKTTT  ML   L +       + +   + G P+        VD    EL  + 
Sbjct: 123 CITGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVAAEGAVDALAVELSSAQ 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---------GT 222
           L      T+ ++P  AV    AP H+      +E A  K++++ G+++           T
Sbjct: 179 LH----STYSLKPWAAVWLNFAPDHIDWHGSADEYAWDKSKVYCGVQRAALYPATEELPT 234

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L+      +   A+        I + G     +  +             ++L   +  
Sbjct: 235 KVLSKRFVQEQGFPAEKCIGLTPGIPAPGFLGVIEDVIVDRAFGENNETQALELATFADL 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               G     +  +  TL    +  +     +         E    R       G  T I
Sbjct: 295 EHLSGAKTPTSALLADTLAAAGLARSYGLQPVWVRRGIREFELANHRRAVVGTFGGVTYI 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  A++  ++      +     V GD        Q FH  +        + 
Sbjct: 355 DDSKATNTHAAAASLRDIAD-----KRAVWIVGGD-----AKGQDFHSLV--QAVAPKVK 402

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV---KSS 452
              L G      + A   +      +        M+      ++S V GD V++    +S
Sbjct: 403 AAVLIGLDPEPFESAFAENGAGIPVKRVAPGDNLMERTLNEARASAVPGDTVLLAPACAS 462

Query: 453 ---------NSCGFYRLINLL 464
                        F ++   L
Sbjct: 463 WDQFNNYHERGDQFAQVARRL 483


>gi|330828377|ref|YP_004391329.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
 gi|328803513|gb|AEB48712.1| UDP-N-acetylmuramate-alanine ligase [Aeromonas veronii B565]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 105/371 (28%), Gaps = 36/371 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML                     G     AR+     F + E   
Sbjct: 105 VLAVAGTHGKTTTASMLA--WVLEYAKLEPGFLIGGVPGNFPVSARLG-SAPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  +  I      +   +   G +    
Sbjct: 162 YDCAFFDKRSKFVHYHPRTLVMNNLEFDHADIFPDLAAIQRQFHHLMRTVPSNGRVLFPQ 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
            D     ++       ++           D + +  K   + S  EV     K  EV   
Sbjct: 222 ADDNLTAVRKMGCWSEVE------LVGQDDAKWQAVKLADDGSAFEVWLDGEKQGEVHWE 275

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLID 343
            IG H   N LM +         V+  I AL  F   + R +             F    
Sbjct: 276 CIGEHNVNNGLMAIAAARHAGVMVEHGIAALCQFKSPKRRMELKGEVAGISVYDDFAHHP 335

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            +       ++A +     ++          LG   E          +LA          
Sbjct: 336 TAIETTLGGLRAKVGCSRILAVLEPRSNTMKLGVHKE----------ELAGCFD--GADE 383

Query: 404 VWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V+       G+ +  +   + R         ++ L   + +   DGD +++  SN  GF 
Sbjct: 384 VFFFQPPNIGWDLGEVTAHMTR--PAKVFNDLETLINRLVAESRDGDHILI-MSNG-GFG 439

Query: 459 RLINLLLEEFP 469
            + + L+    
Sbjct: 440 GIHDKLIARLK 450


>gi|207721502|ref|YP_002251942.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
 gi|206586662|emb|CAQ17248.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum MolK2]
          Length = 483

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 131/405 (32%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL   +   ++ V+ +G  
Sbjct: 347 AATVAAARGAFPDR----RLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVYSAGEP 402

Query: 411 VLALKDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +   D         +   I   + E ++ +   I  +  D DVV
Sbjct: 403 PIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVV 447


>gi|83748767|ref|ZP_00945782.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|207744400|ref|YP_002260792.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
 gi|83724588|gb|EAP71751.1| UDP-N-acetylmuramate--alanine ligase [Ralstonia solanacearum UW551]
 gi|206595805|emb|CAQ62732.1| udp-n-acetylmuramate--l-alanine ligase
           (udp-n-acetylmuramoyl-l-alanine synthetase) protein
           [Ralstonia solanacearum IPO1609]
          Length = 483

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 131/405 (32%), Gaps = 42/405 (10%)

Query: 64  GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA  VVV+T +              IP+         +  LA   RL+     IAI G+ 
Sbjct: 64  GANAVVVSTAVRGDNPEVLAARAKRIPIV----PRAVM--LAELMRLKQG---IAIAGTH 114

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  ++   L+        +     +       AR+    DF + E   S       
Sbjct: 115 GKTTTTSLVASVLAEGGLDPTFVIGGRLNS--AGANARLGTG-DFIVAEADES-----DA 166

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLK 236
               + P I VIT I   H+  +            E    L   G   L  DD     + 
Sbjct: 167 SFLNLFPVIEVITNIDADHMDTYGHDFARLKQAFIEFTHRLPFYGIAVLCVDDPNVREIL 226

Query: 237 AKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                  ++  ++   + +  + +    +                + +  +  G H  QN
Sbjct: 227 PFVSKPVVRYGFAEDAQVRAVNARAVDGRMEFTVIRQLNGHAEPPLSITLNLPGMHNVQN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF--TLIDESYNANPASM 353
            L  + I + L    +  +KAL+ F+    R +RY             + + Y  +P  M
Sbjct: 287 ALAAIAIATELEVPDEAIVKALAEFNGVGRRFQRYGEVPTADGQGRFTLIDDYGHHPVEM 346

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH 410
            A ++      P        VL         ++    D  +VL   +   ++ V+ +G  
Sbjct: 347 AATVAAARGAFPDR----RLVLAFQPHRFTRTRDCFEDFIKVLGTVDGLLLAEVYSAGEP 402

Query: 411 VLALKDA--------LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +   D         +   I   + E ++ +   I  +  D DVV
Sbjct: 403 PIVAADGRSLTRALRVAGKIEPVFVEQIEDMPQAILDAAQDNDVV 447


>gi|325288380|ref|YP_004264561.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
 gi|324963781|gb|ADY54560.1| cyanophycin synthetase [Syntrophobotulus glycolicus DSM 8271]
          Length = 875

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 123/377 (32%), Gaps = 43/377 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLARMP 157
             IIA+TG+ GKTT   M+   L                          +  P +   + 
Sbjct: 480 IPIIAVTGTNGKTTVVRMINKVLLENMVRVGMTSSEGVFINDKLLVTGDMTGPQSAQIVL 539

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEIFE 215
              D     L  +  G +R         +AVIT ++  HL  +    +EE+A  K  + E
Sbjct: 540 RHPDVQAAVLETARGGILRAGLAYDYADVAVITNVSDDHLGQYGIETVEEMAKVKMLVAE 599

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHAL---------GIKTIYSFGKSKNADFQLRKWKQC 266
            + K G + LN DD        ++ A            K            F  +   + 
Sbjct: 600 RVNKYGYVVLNADDPIVAGFDKRTEAKVIYFSLDPANRKLCKHIALGGTGIFVDKNQIKL 659

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +   ++   + +++ +   G   H  +N+L  +G    L        K+L  F  +   
Sbjct: 660 GQGFDVQQICKIQNIPLTWSGKAKHNIENILAAIGACWALGYSASQMRKSLKKFGSENKD 719

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                        T+I + Y  N A +K AIS L QI          ++G +   G+   
Sbjct: 720 NYGRLEYYEVNGVTIILD-YAHNCAGLKEAISTLRQIKKRR------IIGCIGLPGDRRN 772

Query: 387 SFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRS----IHVHYSETMDG 432
                 A + +      +++          +G     L + L ++     ++        
Sbjct: 773 EMVKKYARIAAQ-GFDDIFIKEDLCKRGRQTGEIAEILHNELIKAGFQEKNLKKVLDEKE 831

Query: 433 LFLFIQSSLVDGDVVVV 449
            F    S    GD+VVV
Sbjct: 832 SFRQAISQAEPGDIVVV 848


>gi|323144064|ref|ZP_08078708.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
 gi|322416177|gb|EFY06867.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Succinatimonas
           hippei YIT 12066]
          Length = 445

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 107/377 (28%), Gaps = 48/377 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R  +   II ITGS GK+T   ++   L           +   + G  +       +   
Sbjct: 103 REVTDVPIIGITGSNGKSTVTALVGYILEKAGI----PSAVGANFGNAVFDIYSKRN-RM 157

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     L         VI  ++  HL  + G  +                 
Sbjct: 158 YVLELSSFELETTSSLHL----KAGVILNVSEDHLDRYEGSIDKYRDAKHRIFMHCDNII 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  +           ++         SFG     D      ++  E +++ V  +     
Sbjct: 214 VNRDDP---------RTFPANGHYAASFGL----DDLSYGREETPETTYLTVNGRRVLDV 260

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H   N L  + +   +  D +  I+AL  F   E R    +        +  
Sbjct: 261 KDLIICGRHNELNALAAMALADAVGIDRNVQIEALKTFPGLEHRC---QLIRELDGVSYY 317

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N AS +AAI  L    P G    I +L      G+        L + +S     
Sbjct: 318 NDSKATNVASAQAAIEGLCSRHPQG----IILLAGGLGKGQDFTPLKRYLGKEVSAM--- 370

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------- 452
             +  G     L        + H    +             G  +++    +S       
Sbjct: 371 --FCFGKDADKLLSL--DEKYTHSVLNLRQALNSAVQMARPGQAILLSPACASFDQFKGF 426

Query: 453 --NSCGFYRLINLLLEE 467
                 F  L+  L  +
Sbjct: 427 EERGRVFVNLVRHLKAD 443


>gi|6332755|dbj|BAA86637.1| hypothetical protein [Staphylococcus aureus]
          Length = 324

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
           M  AI   +  +   +G +I  +G + ++G+ S+S H+ L +VL   N  ++      + 
Sbjct: 1   MINAIKAFNTQTKFFKGNKIIAIGQISDLGKHSKSLHLQLVDVLENSNADYILCMDDALK 60

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN-SCGFYRLINLLLEE 467
           ++   + +S ++ +      L   +        + ++KSS     F +L   L E+
Sbjct: 61  SVVTGV-KSKNITWYSNRHLLEKDLLYLNKPDSLTLLKSSAGGTEFPKLAKELPEK 115


>gi|254488363|ref|ZP_05101568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
 gi|214045232|gb|EEB85870.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           GAI101]
          Length = 464

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 72/408 (17%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 59  HAVQKGA---GLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKLAVAARLRS 106
             ++ GA      ++ +  +  +     PV          VD D+       A       
Sbjct: 57  DLMKAGAFDDVARLIVSPGIPHLYPAPNPVIVAAQDAGVAVDNDIGLFFQSFATQDWDGF 116

Query: 107 K--ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                IIA+TGS GK+TT  ++   L    +          +IG  +      +D +  +
Sbjct: 117 DQMPKIIAVTGSNGKSTTSALIHHILKHAGR----PTQLAGNIGRGVLDIEPAIDGEVVV 172

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL        R LT    P IAV T ++P HL   +G+    +AK  +F        I 
Sbjct: 173 LELSSYQTDLARNLT----PDIAVFTNLSPDHLDRHAGMGGYFAAKRRLFAEGGPDRAII 228

Query: 225 LNYDDSF---FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              +         L   +    +  +    K     +Q+   K    +     Q+    +
Sbjct: 229 GVDEAEGRYLAGQLSEGAADDRVIRVSVDRKLSGPGWQVFARKGFLSEYRKGKQVGSIDL 288

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
             V    G H  QN          L         A + F     R    +          
Sbjct: 289 RGVTGLPGAHNHQNACAAYAACRSLGFAPKVIEAAFASFGGLPHRS---QTIGELRGIRF 345

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S   A++    I     G     L     +G L+               +
Sbjct: 346 VNDSKATNVDSAVKALAAFRNIRWICGG-----LEKDGGLGVLTAPL----------ETV 390

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ G         L   +      TMD       +    GDVV++
Sbjct: 391 RKAYVIGREAAQFAMKL--GVEAEVCGTMDVAVARAVAEAEAGDVVLL 436


>gi|161504749|ref|YP_001571861.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189082495|sp|A9MQC1|MURC_SALAR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|160866096|gb|ABX22719.1| hypothetical protein SARI_02872 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 125/401 (31%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  ++     + V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYQQIGPQGHFTLLRQGMPDLRVTLNAPGRHNALNATAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P        V+         ++  + D A VL+   +  + +            G    
Sbjct: 370 WPDKN----LVMLFQPHRYTRTRDLYDDFANVLTQ--VDALLMLDVYPAGETPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     +          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRNRGKIDPILVSDPAQIATILAPVLTGNDLILVQG 464


>gi|319408823|emb|CBI82480.1| UDP-N-acetylmuramate--alanine ligase [Bartonella schoenbuchensis
           R1]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 75/427 (17%), Positives = 137/427 (32%), Gaps = 51/427 (11%)

Query: 47  KGPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV-DDVLGA--LNKLAVAA 102
           KG +   GH      ++  A +VV++T +  +              V  A  L +L    
Sbjct: 49  KGINIHIGHR--AENLEA-AKVVVISTAIKKTNPEYIAAKEKHLPIVRRAEMLAELMRFR 105

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R       IA+ G+ GKTTT  M+   L +       I     +              D+
Sbjct: 106 R------TIAVGGTHGKTTTTSMVAALLDASNFDPMVINGGIIN---AYGTNARMGCGDW 156

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S           +   I V+T I   HL  +   + +  A  +  E +   G 
Sbjct: 157 MVVEADES-----DGTFLKLPADIVVVTNIDSEHLDYYGSFDAVREAFRQFVENMPFYGF 211

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  D    + L ++        + ++G +  AD +        +++  +V ++ +   
Sbjct: 212 AVMCLDHPEVQTLASRIDDR---WVVTYGANPQADVRFLNLSMEGQKTHFDVLIRSRKTN 268

Query: 283 VV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N    + I   L    ++  K L+ F   + R  +      
Sbjct: 269 EETELRNLVLPMSGQHNISNATAAIAIAHELGISNESIRKGLAEFCGVKRRFTQTGSW-- 326

Query: 336 QGFFTLIDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                 I + Y  +P  +KA            V++ + PH   R   +  D       + 
Sbjct: 327 --CGVEIFDDYGHHPVEIKAVLSAARESAKGRVIAIVQPHRYSRLHDLFDDFVTCFNDAD 384

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDG 444
           +  I          I     +GF    L + +  + H  V    T++ + L I +    G
Sbjct: 385 TVMIAPVYAAGEEPI-----TGFGSKELVEHIQMASHRDVRLVNTLEDIALIIATLAKPG 439

Query: 445 DVVVVKS 451
           D VV   
Sbjct: 440 DYVVFLG 446


>gi|297181730|gb|ADI17911.1| folylpolyglutamate synthase [uncultured Desulfobacterales bacterium
           HF0200_07G10]
          Length = 443

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 90/320 (28%), Gaps = 26/320 (8%)

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             ++     V   L     + D  + E+    LG     T+L +  I++IT+I+  H   
Sbjct: 115 PITFFEFGTVLAFLYFHEQNTDINVIEV---GLGGRLDATNLCKAEISIITSISLDHTQY 171

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
               + +     E    + + GT+F +  +     +           I+  G   +   +
Sbjct: 172 LG--DNLQQIAFEKASIINEGGTVFAHIPEEEVFKVVNLLAKKCFADIHRLGLEFHVAPE 229

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
               K   + ++           +     G+    N  + L     L  +    I+   +
Sbjct: 230 TGNRK---KNTFSYRWGSRSLNNLTLPLNGHFQRNNAGLALSACLALNENGF-NIEEEHL 285

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
               E      R        T++ +  +   +       +          R   VLG M 
Sbjct: 286 RQGLEMVSWEGRLETVSFNPTVVLDCAHNEDSVKNMTKELRENFK---FSRCFIVLGLMQ 342

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIHV-HYSETMDG 432
                      ++ ++LS       +L       G     L   L           T+  
Sbjct: 343 ------DKNIDEIIKILSRLG-DQFFLVSVNPPRGETSEKLAKKLKSHNKASQAFGTISD 395

Query: 433 LFLFIQSSLVDGDVVVVKSS 452
               ++      D++ +  S
Sbjct: 396 ALQAVKHIANQDDLICITGS 415


>gi|241763201|ref|ZP_04761260.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
 gi|241367700|gb|EER61966.1| cyanophycin synthetase [Acidovorax delafieldii 2AN]
          Length = 859

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/396 (15%), Positives = 126/396 (31%), Gaps = 46/396 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---------- 139
           +V  A+     A     +  ++A+TG+ GKTTT  ++    ++                 
Sbjct: 451 NVGQAMVDRLFAHGDDGRIPVVAVTGTNGKTTTARLIAHLFTAQGMRVGMTNTDGVYVNG 510

Query: 140 IGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               +     P +     +  +VD  +FE      G +R      R  +AV+T I     
Sbjct: 511 RQIDSGDCSGPKSARNVLLHPEVDAAVFETA--RGGILREGLGFDRCQVAVVTNIGAGDH 568

Query: 198 SNFSGI---EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKT 246
              + I   E++A  K  I + +  TG   LN  D     + +                 
Sbjct: 569 LGLNYITTVEDLAVLKRVIVQNVTPTGYAVLNATDPIVAAMASACPGKIIYFASDRHHPV 628

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + +     +    +      + +      +  + + +  +G      +N++ ++      
Sbjct: 629 MATHRAQGHRTVYVDGDSIVAAEGSWRETIHLRDVPITRNGKIGFQVENVMASVAAAWGA 688

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                T  + LS F             ++    T+I + Y  NP +M+A +  +  +  +
Sbjct: 689 GLPWQTIRRGLSGFVNDSDNAPGRFNLMDFKGATVIAD-YGHNPDAMRALVQAVEALPAN 747

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKD 416
                + + G     G+       +   +L       V L           G  +  L++
Sbjct: 748 RRS--VVISGA----GDRRDEDIREQTVILGEV-FDDVILYQDAAQRGRGDGEVMALLRE 800

Query: 417 ALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            L  +    + E + G           L  GD+ +V
Sbjct: 801 GLAGATRTQHIEEIRGEFIAIDAALDRLKSGDLCLV 836


>gi|121611886|ref|YP_999693.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
 gi|121556526|gb|ABM60675.1| cyanophycin synthetase [Verminephrobacter eiseniae EF01-2]
          Length = 890

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 119/396 (30%), Gaps = 43/396 (10%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI------------KKTY 137
           +V  A+ +   A     +  ++A+TG+ GKTTT  ++    ++                 
Sbjct: 479 NVAQAIVERLYAHGDDGRIPVVAVTGTNGKTTTARLIAQLFTAQGLRVGMTNTDGVYVNG 538

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             I S +           +  +VD  +FE      G +R      R  +AV+T I     
Sbjct: 539 RQIDSGDCSGPKSARNVLLHPEVDAAVFETA--RGGILREGLGFDRCQVAVVTNIGTGDH 596

Query: 198 SNFSGI---EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
              + I   +++A  K  I + +   G   LN  D     +        I          
Sbjct: 597 LGLNYITTVQDLAVLKRVIVQNVAPGGYAVLNAADPIVAAMAPACPGKVIYFAGGRHHPV 656

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
               + +  +         V  +G   E   H     + +N  +   + +++ A      
Sbjct: 657 MVTHRAQGHRTVYVDGDCIVASEGSWRE-TIHLRDVPVTRNGTIAFQVDNVMAAVAAAWG 715

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDES--------YNANPASMKAAISVLSQISPH 366
             L     + G       + N      I +         Y  NP +M+A  S +  I   
Sbjct: 716 VGLPWQTLRRGLSGFVNDSDNAPGRFNIMDYRGATLIADYGHNPDAMRALASAVEAIDAA 775

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKD 416
              RR  V+    +  +        +           V L           G  +  L+ 
Sbjct: 776 SGKRRSVVISAAGDRRDEDIRQQSAILGAA----FDEVILYQDAAQRGRSDGEVMALLRQ 831

Query: 417 ALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            L  +    + E + G         + L  GD+ +V
Sbjct: 832 GLIGAARARHIEEIHGEFNAIDTALARLQPGDLCLV 867


>gi|86516515|gb|ABC97948.1| MurD [Shigella boydii]
          Length = 154

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 52/149 (34%), Gaps = 25/149 (16%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L       +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLQV-----DGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LA  L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LARYLNGDNV-RLYCFGRDGAQLAALRPDV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV---KSS---------NSCGFYRLINL 463
           V++    +S             F RL   
Sbjct: 124 VLLSPACASLDQFKNFEQRGNEFARLAKE 152


>gi|317121120|ref|YP_004101123.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
 gi|315591100|gb|ADU50396.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter marianensis
           DSM 12885]
          Length = 479

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 111/304 (36%), Gaps = 31/304 (10%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKT 220
           + + E   S    +R+L     P IAV+T + P HL ++     ++  A A     +   
Sbjct: 166 WVVAEACESDGTFLRYL-----PEIAVVTNVEPEHLDHYGGDFAQLLQAFARFLRNVRPG 220

Query: 221 GTIFLNYDDSFFELL-KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           G +    D      L   ++ A G++ +    +++++D + R  +   E +   V   G+
Sbjct: 221 GLVVACGDHPVLRQLLADRTPAPGVRVVRYGMEAEDSDLRARDVQAGPEGTRFTVWQGGR 280

Query: 280 S-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              EV     G H   N L  + +   L      A  AL+ FH  + R +     +    
Sbjct: 281 PLGEVRLAVPGLHNVLNALAAVAVGLELRVPFAAAAAALASFHGAKRRFQ----VIYNRD 336

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             L+ + Y  +P  ++A +    Q      GR IAV     +    ++    + A   + 
Sbjct: 337 GILVVDDYAHHPTEIRATLRAARQRQGE-GGRVIAVFQP--QRYSRTRLLMDEFAR--AF 391

Query: 399 YNISHVWLS------------GFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +   V L+            G     L D  A      V    + + L   +  ++  G
Sbjct: 392 GDADRVILTEIYAPPGERPIPGVSSAVLADRIAREEGRPVELIASREELVEHLLRTVRPG 451

Query: 445 DVVV 448
           D+V+
Sbjct: 452 DLVL 455


>gi|225551700|ref|ZP_03772644.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
 gi|225371727|gb|EEH01153.1| UDP-N-acetylmuramate--alanine ligase [Borrelia sp. SV1]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 133/382 (34%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +V   L +L+           I I GS GKTTT   L +  + +   
Sbjct: 92  EAKELNIPILSYPEV---LGELSRKHYS------IGIAGSHGKTTTTAFLGVLFNKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E        + F      P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FKDNSAIAGISNIFIVETCEYKKHFLNFS-----PNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +  + L+K G + +N DD+    +  +       +I+S+G    +
Sbjct: 196 VDFFKNYEALEEAFLQYIDNLKKNGILIINSDDNNLLKI-KRQINRKDISIFSYGSGDLS 254

Query: 257 DFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           DFQ+      S+             ++ V      + +  +L     +      +    +
Sbjct: 255 DFQISNIAVRSKYFCFSFLGFLNVELKTVLFHNVLNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A+          KR    + +    +  + Y  +P  +K  +  +     +       +L
Sbjct: 315 AIKRIAKNYSGIKRRVEVVKEENGVIYMDDYAHHPREIKNTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVLS  +I  +                 + L  ++ + + + 
Sbjct: 371 DFMPHTFTRTKEFFADFVEVLSAADILILHNIYLSNRENFNPDELSVKLFLSIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|224534179|ref|ZP_03674759.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
 gi|224514604|gb|EEF84918.1| UDP-N-acetylmuramate--alanine ligase [Borrelia spielmanii A14S]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 133/402 (33%), Gaps = 43/402 (10%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A  KG   V++          L+IPV    +V   L +L+           I I GS G
Sbjct: 80  SAYDKGGLQVLLEAK------ELNIPVLSYPEV---LGELSRKYYS------IGIAGSHG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT   L +  + +      I   +         + +    +  I E        +   
Sbjct: 125 KTTTTAFLGLLFNKLGLNPNVIVGSSVKD--FGDNSAIAGISNIFIAETCEYKKHFL--- 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P++ ++T I   H+  F   E +  A  +    L+K G + +N DD+    +  +
Sbjct: 180 --YFSPNMLILTNIDYEHVDFFKNYEALEDAFLQYINNLKKNGILIINSDDNNLLKI-KR 236

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNML 297
                   I+SFG    ++FQ+      +E                       + +  +L
Sbjct: 237 QINRKDINIFSFGSKDLSNFQINNIVVENEYFCFSFLGLCNIKLKTALFHNVLNFSAALL 296

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
                +      +    +A+          KR    + +    +  + Y  +P  ++  +
Sbjct: 297 ALNLFLESNGKSIFNFEEAVKKIAKNYSGIKRRVEVIKEKKGVIYMDDYAHHPREIRDTL 356

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
             +     +       +L  M      ++ F  D  EVLS+  +  + L           
Sbjct: 357 FGIKNFYKNK----RIILDFMPHTFTRTKEFFNDFVEVLSV--VDILILHNIYLSNRENF 410

Query: 408 --GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
                 + L   + + + + ++ + +     FI+S L+ GD+
Sbjct: 411 NPDELSVQLFLNIKKINKNTYFFKDVKDSIEFIKSLLISGDL 452


>gi|157368712|ref|YP_001476701.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
 gi|157320476|gb|ABV39573.1| UDP-N-acetylmuramate [Serratia proteamaculans 568]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 110/365 (30%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYQPGFVIGGVPGNFDVSARLG-GSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +DS  + + A          +S  +    +   R  K   + S   V L G+ +  V   
Sbjct: 222 NDSHLKQVMA-------MGCWSEQELVGEEGAWRAQKLTPDASHYAVFLNGEQVGEV--K 272

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  NM   L  ++           A           +R          T+ D+   
Sbjct: 273 WSLVGEHNMHNGLMAIAATRHVGVLPEDACRALGDFINARRRLELRGEANGVTVYDDF-- 330

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           A+  +   A     +    G  R +AVL    +  +MG         L           V
Sbjct: 331 AHHPTAILATLAALRSKVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L   H       + A       H+S  +D L   I  +   GD ++V  SN  GF  + 
Sbjct: 385 FLFQPHHIPWQVAEVAEACVQPAHWSADLDTLVDMIVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
           + LLE
Sbjct: 443 DRLLE 447


>gi|323487300|ref|ZP_08092600.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
 gi|323399345|gb|EGA91743.1| hypothetical protein HMPREF9474_04351 [Clostridium symbiosum
           WAL-14163]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 67/380 (17%), Positives = 121/380 (31%), Gaps = 39/380 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    R       IAI G+ GKTTT  M+T                     V   
Sbjct: 101 ELLGQMMKNYREA-----IAIAGTHGKTTTTSMVTEIFMEADNNPTIS--------VGGI 147

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  +  ++  G  E  ++   E         P +AVI  I   HL  F  I++I  +  +
Sbjct: 148 LNSIGGNIRVGGPEFFVTEACEYTNSFLSFYPTMAVILNIEEDHLDFFKDIDDIRRSFRQ 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             E + + GTI +N     +  L A +    +    S     + D  +         S+ 
Sbjct: 208 FIEKVPENGTIIMNGTIENWRELTAGAAGKVVTFGNSKENDYSFDAVVYDEYARP--SFD 265

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                 K   +     G H   N L  + +     A ++ A + L  F     R      
Sbjct: 266 LYIKGEKKERISLGVQGEHNVYNALGAIAVAMESGAGLEAAGRGLLKFTGTNRRF----E 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +     I + Y  +P  ++A +                           +++F  + 
Sbjct: 322 KKGELKGITIIDDYAHHPQEIEATLKAAENYPHKR-----ICCAFQPHTYTRTKAFMKEF 376

Query: 393 AEVLSLYNI---SHVW------LSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLV 442
           A+ LSL +    + ++        G     +   L  + +   Y  T D +  FI  +  
Sbjct: 377 AQALSLADCVMLTDIYPARETDTLGVSSADIVALLKEKGVDAWYLPTFDDMEKFILENCT 436

Query: 443 DGDVVVVKSSNSCGFYRLIN 462
            GD +++      G   ++ 
Sbjct: 437 QGD-LLIT----MGAGDIVK 451


>gi|296327766|ref|ZP_06870305.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155113|gb|EFG95891.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 428

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 114/353 (32%), Gaps = 47/353 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
            K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF  
Sbjct: 85  LKTKIIAITGTNGKSTTTAKISDMLNHAGY----KATYAGNIGRSLSEVLLKEKDLDFIS 140

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       +P I++I  I P H+  +   +E  + K  I +   +     
Sbjct: 141 LELSSFQLENIE----NFKPCISMIINIGPDHIERYKSFDEYYNIKFNITKNQTEDLYFI 196

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD   E    +  A  I    S  K K AD  +   K              K   + 
Sbjct: 197 ENIDDEEIEKRAKQIKAKRI----SVSKFKKADIFVENDKIYH----------DKDDIID 242

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+  TL +V+          K             R     N G    I++
Sbjct: 243 VDKLSLKGIHNLENTLFMVATAEILKLDREKLKGFLMIATPLEHRTELFFNYGKLKFIND 302

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K AI           G    V                 LAE++   NI  V
Sbjct: 303 SKATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEV 348

Query: 405 WLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     +++ L +           V+   ++  +           +V+++
Sbjct: 349 YLIGVIADKIENELKKVGYEDNKIHKLVNIENSLQDMKKRFTKD--SDEVILL 399


>gi|329770442|ref|ZP_08261824.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
 gi|328836565|gb|EGF86225.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gemella sanguinis
           M325]
          Length = 446

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 110/345 (31%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L    K          +IG P             I 
Sbjct: 106 FNVDMVAITGTNGKTTTTQMTYDILKQSNKDVY----LAGNIGYPSIEVAYNHPNSLIIT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   ++     RP IA IT +   HL     IE   +AK +I++    T  + L
Sbjct: 162 EVSSFQLEGTKYF----RPSIAAITNLGEGHLDYHKSIENYRNAKRKIYKNQVDTDFLIL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +     +   +                            + + +             
Sbjct: 218 NIKEKDKYNISEIN----------SNIIFYDTKFNTDADVYIKDNMVIYGDVELFDSTKL 267

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H  +N +    I     AD+++  K L  F   + R    +           ++S
Sbjct: 268 TLPGLHNVENGINAAVIAYKKGADIESIRKVLYNFSGVKHRL---QYVGENKGIKYYNDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +   A+S         E   + + G     G+       +L+  L+   +  + 
Sbjct: 325 KATNPVATINALSGF-------EKNVVLICG-----GQDRGIDFHELSPYLNR--VKTMV 370

Query: 406 LSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G     LK      +++   +  +D          V GD++++
Sbjct: 371 VVGESADILKSLADKNNVNCIKAIKIDDATEKASKLAVTGDIILL 415


>gi|152968676|ref|YP_001333785.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|330012006|ref|ZP_08307223.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
 gi|166224697|sp|A6T4N4|MURC_KLEP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150953525|gb|ABR75555.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|328533995|gb|EGF60647.1| UDP-N-acetylmuramate--L-alanine ligase [Klebsiella sp. MS 92-3]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 120/400 (30%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  V+     ++V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYRQVGAQGHFRLVRQDKAILQVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHP---------------KEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D    ++AL  F                   G+        + G      ++      + 
Sbjct: 310 DDRAILRALESFQGTGRRFDFLGEFPLAEVNGKPGSAMLIDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMVFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     V              + S L   D+V+V+ 
Sbjct: 425 LCRTIRGRGKVDPILVPDSTQAAEMLASVLTGNDLVLVQG 464


>gi|260891632|ref|ZP_05902895.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
 gi|260858642|gb|EEX73142.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Leptotrichia
           hofstadii F0254]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 118/369 (31%), Gaps = 37/369 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
            LA     +    II+ TG+ GKTTT   +   L+         G+        +     
Sbjct: 82  DLAYKYVDK-NIKIISFTGTNGKTTTSTKMAELLNFAGFRAKLAGNAGFSFAKLVADEE- 139

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             ++D+ + EL    L         +  +IA I  + P HL+ +  +E+    K  IF+ 
Sbjct: 140 --ELDYIVLELSSYQL----ENNPQIHSNIAGIINLTPDHLTRYESVEDYYITKFAIFDK 193

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKT----IYSFGKSKNADFQLRKWKQCSEQSWM 272
                   +N DD  F  L  +              S              +   + S  
Sbjct: 194 QTGDDFALINLDDEVFAELYERREINEKMKAQKVYLSKETKGTVFVYENNIRIMKDLSKR 253

Query: 273 EVQLQGKSMEV--------VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             ++Q    ++            +      N+   L ++S          K         
Sbjct: 254 IDEIQNFGEKIDEISEILLKTEELSLKGRHNLENMLFLISSAKILNVKNEKLAEFLKSTN 313

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
               R      +G    I++S   N  S   AI              I +LG     G+ 
Sbjct: 314 ALEHRLENFFVKGNTAFINDSKGTNVESTLKAIDSF-------NNSIIMILG-----GDD 361

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSL- 441
            +  ++ L E +    +  V+L G +   L D + +  + +Y   ET++ +  +++ ++ 
Sbjct: 362 KKIDNMPLIERVKE-KVDFVYLIGDNAQILIDDMEKIGYKNYKNLETVENVLNYLKQNVD 420

Query: 442 -VDGDVVVV 449
                 V+ 
Sbjct: 421 FSQNQTVLF 429


>gi|281421051|ref|ZP_06252050.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
 gi|281404969|gb|EFB35649.1| UDP-N-acetylmuramate--alanine ligase [Prevotella copri DSM 18205]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 97/354 (27%), Gaps = 42/354 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKT+T  M    +              +      T   +    D+ + E    
Sbjct: 115 LCVAGTHGKTSTSTMCAHIMHQSHIDCNAFLGGISKN--YGTNYILSDKSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT   P HL  +   E    +     E ++  G + ++    
Sbjct: 171 ---EFDRSFHWLRPWMSVITATDPDHLDIYGTKEAYLESFRHYTELIQPGGALIIHKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  K H      IY + + +          +    ++  +        V       
Sbjct: 228 M------KQHVQDGVKIYEYSQDEGDFHAENIKIENGGITFDFISPIENVTGVELGQPVP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N +  + +  +     D     +  +   + R           F +          
Sbjct: 282 INITNGVAAMAMAQLNGCTADELRNGMKTYGGVDRRFDFKIKNNKLVFLSDYAHHPKEIY 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +          +          +   ++ F+ D A  LSL  +  V L    
Sbjct: 342 QSAKSIRELYKDRKITAIFQPH--------LYTRTRDFYKDFANSLSL--LDEVILCDIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
                   G     + D L   +        + +   +++        L  GD+
Sbjct: 392 PAREQPIPGVTSKLIYDNLKPGVEKSMIH-KEDVLDLVKNRDFDVLVILGAGDL 444


>gi|24111536|ref|NP_706046.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           301]
 gi|30061658|ref|NP_835829.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|44888197|sp|Q83MF8|MURC_SHIFL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24050295|gb|AAN41753.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 301]
 gi|30039900|gb|AAP15634.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 2a str. 2457T]
 gi|281599453|gb|ADA72437.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 2002017]
 gi|313646526|gb|EFS10987.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2a str.
           2457T]
 gi|332762290|gb|EGJ92557.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2747-71]
 gi|332764937|gb|EGJ95165.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-671]
 gi|333022321|gb|EGK41559.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-304]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 101/396 (25%), Gaps = 37/396 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS 253

Query: 250 ------------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                        G   +     +  +          +    +              +  
Sbjct: 254 EDADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEA 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   + S                 P  G+        + G      ++      +     
Sbjct: 314 ILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDK 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +++    PH   R   +  D   +     +  +          I      G    +L   
Sbjct: 374 NLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRSLCRT 428

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     +          +   +   L   D+++V+ 
Sbjct: 429 IRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|325663714|ref|ZP_08152118.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470207|gb|EGC73440.1| UDP-N-acetylmuramate-L-alanine ligase [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 459

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 65/392 (16%), Positives = 126/392 (32%), Gaps = 37/392 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
             V  +     +     IP+          L +L          T IA++G+ GKTTT  
Sbjct: 77  AAVHADNPEFIAAKEHQIPML----TRAELLGQLMTNY-----KTPIAVSGTHGKTTTTS 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M++  L +              I   +         D  I E       E         P
Sbjct: 128 MISHILLAGDTDPTISVGGILKI---IGGNIRVGHSDVFITEAC-----EYTNSFLDFLP 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I +I  +   H+  F  +++I  +       L   GT+ +N + S +E + A       
Sbjct: 180 KIGIILNVEEDHMDFFKDLDDIRHSFHRFAALLPNDGTLIINSEISQYEQIIA----GLN 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++G   +AD+  +  +  +  +     +   + +            N+   L  + 
Sbjct: 236 CNVITYGIHHDADYTAQNIQYDNMGNVSFDLIDHGTKKDRIFLSVNGEH-NVSNALSAII 294

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAA 356
             T       K         G  +R+         T+ID+  +         + A     
Sbjct: 295 TGTLLGIDLEKIKKGLLSFTGTDRRFEYKGTLDGVTIIDDYAHHPTEIEATLSAAQHYPH 354

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             +     PH   R  A   +  +   L+ + H+ LA++ +      +   G    AL D
Sbjct: 355 REIWCIFQPHTYTRTKAFFHEFAQ--ALTLADHVILADIYAARETDTL---GMSSEALSD 409

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           A+        Y  + D +  F++   + GD++
Sbjct: 410 AIRELGGDSCYFSSFDEIKNFVKEKCIHGDML 441


>gi|146310301|ref|YP_001175375.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
 gi|167017282|sp|A4W6J4|MURC_ENT38 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|145317177|gb|ABP59324.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter sp. 638]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 124/397 (31%), Gaps = 43/397 (10%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +            +        + I E   S    +      ++P +A++T I
Sbjct: 144 AGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +          L   G   +  DD     L  +      +   ++G
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYG 251

Query: 252 KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  + Q   +  +   +   + + V  +  G H A N    + + +    + 
Sbjct: 252 FSEDADVRVESYTQTGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIED 311

Query: 311 DTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           D  ++AL  F     R              +    ++ + Y  +P  + A I       P
Sbjct: 312 DDILRALESFQGTGRRFDFLGEYPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALKD 416
                   V+         ++  + D A VL   +      V+ +G          +L  
Sbjct: 372 DKN----LVMLFQPHRYTRTRDLYDDFANVLCQVDALLMLDVYAAGEMPIPGADSRSLCR 427

Query: 417 ALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +     V              +   L   D+++++ 
Sbjct: 428 TIRGRGKVDPILVSDPAQAAEMLAQVLTGNDLILIQG 464


>gi|332768881|gb|EGJ99060.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 2930-71]
          Length = 476

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 101/396 (25%), Gaps = 37/396 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 76  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 127 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 178

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +         +S
Sbjct: 179 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS 238

Query: 250 ------------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                        G   +     +  +          +    +              +  
Sbjct: 239 EDADVRVEDYQQIGPQGHFTLLRQDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEA 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   + S                 P  G+        + G      ++      +     
Sbjct: 299 ILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDK 358

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +++    PH   R   +  D   +     +  +          I      G    +L   
Sbjct: 359 NLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRSLCRT 413

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     +          +   +   L   D+++V+ 
Sbjct: 414 IRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 449


>gi|222149135|ref|YP_002550092.1| UDP-N-acetylmuramate--L-alanine ligase [Agrobacterium vitis S4]
 gi|254763734|sp|B9JY53|MURC_AGRVS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|221736120|gb|ACM37083.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium vitis S4]
          Length = 471

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 77/407 (18%), Positives = 138/407 (33%), Gaps = 48/407 (11%)

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A +VVV+T +  S   L      +  V  V  A   LA   R R     IAI G+ GKTT
Sbjct: 67  AEVVVVSTAIKKSNPELVAAREKLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L + +     I     +            + ++ + E   S           
Sbjct: 121 TTSMVAALLEAGQLDPTVINGGIIN---AYGTNARMGEGEWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +AV+T I P HL ++   + + +A  +  E +   G   +  D    + L  +   
Sbjct: 173 LPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQ 294
             +    ++G++  AD +    +    +S  +V+++           ++     G H   
Sbjct: 233 RKVV---TYGENPQADVRFFNVRNEGTKSIFDVEIRRRRTGRVFSFKDLTLPMPGRHNIS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    + + + L    +   K LS F   + R               + + Y  +P  +K
Sbjct: 290 NACAAIAVANRLDISEEAIRKGLSTFGGVKRRFTLTGTWNG----VQVFDDYGHHPVEIK 345

Query: 355 AAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +           ++   PH   R  ++  D       + S  +          I    
Sbjct: 346 AVLKAARESCKGRIIAVHQPHRFSRLSSLFEDFANCFNDADSILLSPVYAAGEDPIE--- 402

Query: 406 LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
             G    AL   +    H  V Y  + D L   I +    GD VV++
Sbjct: 403 --GIDSEALVSRIRSGGHRDVRYLASPDQLAGIISTIAQPGDFVVLL 447


>gi|239813953|ref|YP_002942863.1| UDP-N-acetylmuramate [Variovorax paradoxus S110]
 gi|239800530|gb|ACS17597.1| UDP-N-acetylmuramate [Variovorax paradoxus S110]
          Length = 470

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 111/366 (30%), Gaps = 22/366 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A+ G+ GKTTT  ML      +++     G     + +   ++ 
Sbjct: 101 QWLAEHVLQ--GRHVLAVAGTHGKTTTTSMLA---WVLEQGGKAPGFLVGGVPLDFGVSA 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +    + E                  RP  AV+  +   H   F  +  I      +
Sbjct: 156 RLGNGSAFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHL 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +  TG + +N  +   + + A+     +    + G +     +         +    
Sbjct: 216 VRTVPGTGRLVVNATEESLQRVLAEGCWSELARFGAGGPNSGWQARGTHDAFDVLRQGEA 275

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V      +  +H+ +    A      +G+          A +AL  F     R +     
Sbjct: 276 VGRVEWELSGLHNQMNALAAIAAAEHVGVA------PADAARALGSFRSVRRRMELRGSV 329

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    + + +  +P +++  +  L +       +   +L         S +  + + 
Sbjct: 330 ERSGGAITVYDDFAHHPTAIRTTLDGLRKKLDDAGRQGERILAAFE---PRSNTMKLGVM 386

Query: 394 EV-----LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                  L   ++S    +G    A     P       +  ++ L   I ++   GD + 
Sbjct: 387 AAQLPWSLEAADLSFCHTAGLDWDAAAALAPMGERAQVAGAIEPLVAQIVAAARPGDHI- 445

Query: 449 VKSSNS 454
           V  SN 
Sbjct: 446 VCMSNG 451


>gi|219684934|ref|ZP_03539875.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
 gi|219671672|gb|EED28728.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBr]
          Length = 468

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 126/382 (32%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +V   L +L+           I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYPEV---LGELSRKHYS------IGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +                  GI ++ +    E +       P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD-------FGDNSTIAGISDIFIVETCEYKKHFLHFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD     +K++        I+SFG    +
Sbjct: 196 VDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSQI-NREDINIFSFGSRDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +FQ+      +E                       + +  +L     +      +    +
Sbjct: 255 NFQISNIVVKNEYFCFSFLGLHNIELRTVLFHNILNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +          KR    + +    +  + Y  +P  ++  +  +     +       +L
Sbjct: 315 VVKRVAKNYSGIKRRSEVIKEKKGIIYMDDYAHHPREIRDTLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVL++ +I  +                   L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFDDFVEVLNVADILILHNIYLSNRENFNPDELSFKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|84394436|ref|ZP_00993152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
 gi|84374935|gb|EAP91866.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           splendidus 12B01]
          Length = 438

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 119/343 (34%), Gaps = 39/343 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+T  ++  +   +             +IG+P           + + E
Sbjct: 107 DKPVVAITGSNGKSTVTDLTGVLAKAAGLNV----GVGGNIGIPALDLLELDADLY-VLE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      T  +    A    ++  H+  + G+ +   AK  IF            
Sbjct: 162 LSSFQL----ETTSSLNLAAAAFLNLSEDHMDRYQGMADYRDAKLRIFNN---------- 207

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +       +++      + +FG     D Q           W+    +         
Sbjct: 208 AQYAIVNREDKETYPDYSMPLVTFGL----DDQEFGVATIDGTEWLVDNSKPVLPTQDLT 263

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L++L ++  +  D   +++AL  ++    R    +   ++     +++S 
Sbjct: 264 LVGRHNVANALVSLALLKQVGIDYSKSLEALKAYNGLTHRC---QVVADKRSIKWVNDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N AS  AA+S L       +G    ++G + +  + S     +L  VLS      +  
Sbjct: 321 ATNVASTLAALSGL-----EYQGTLYLLVGGVGKGADFS-----ELEPVLSQLERVQLCC 370

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            G         +P        +TM  +   +   LV GD+V++
Sbjct: 371 FGEDA---AQFMPLHPSAKTFDTMRDIIESVSKQLVAGDMVML 410


>gi|332991941|gb|AEF01996.1| UDP-N-acetylmuramate--L-alanine ligase [Alteromonas sp. SN2]
          Length = 482

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 73/422 (17%), Positives = 147/422 (34%), Gaps = 57/422 (13%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAV 100
           K  + DG D           ++VV++ +  +   +       IP+        A   LA 
Sbjct: 68  KAENVDGMD-----------VIVVSSAINEANPEIITAREQRIPII-----RRA-EMLAE 110

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVD 159
             R R     IA+ G+ GKTTT  +++   +  +     +     +  G    L R    
Sbjct: 111 LMRFRHG---IAVAGTHGKTTTTSLISTIFAQAQYDPTFVIGGLLNSAGTNARLGR---- 163

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLE 218
             + I E   S    +      ++P ++V+T I   H+  +     ++     E    L 
Sbjct: 164 SRYLIAEADESDASFLH-----LQPMVSVVTNIEADHMDTYGGDFSKVKDTFVEFLSNLP 218

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             G   +  DD+  + +  +      ++I ++G   + D + +       Q+   V    
Sbjct: 219 FYGQAIVCGDDANIQEISPRI----GRSIITYGFEAHNDVRAQDITLSFGQANFTVIRPE 274

Query: 279 KSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
           +   +V  +  G H   N L  + + +    D D  + AL+ F     R +         
Sbjct: 275 REPLKVTLNLTGNHNVLNALAAIAVATDEGIDDDAIVTALASFGGIGRRFEVLGDFKTSV 334

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               + + Y  +P  +KA I+      P        V+         ++  + D   VLS
Sbjct: 335 GNVTLVDDYGHHPTEVKATIAAARANWPES----RLVMVYQPHRFTRTRDLYEDFVNVLS 390

Query: 398 LYNISHVWLS---------GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDV 446
             ++  +            G    +L  ++ +   +   Y    + L   + + LV+GD+
Sbjct: 391 TVDVLLLLDVYPASEQPIEGADSKSLCRSIRQRGQIEPVYVGGKEALPAILANILVEGDI 450

Query: 447 VV 448
           V+
Sbjct: 451 VM 452


>gi|251788138|ref|YP_003002859.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
 gi|247536759|gb|ACT05380.1| UDP-N-acetylmuramate [Dickeya zeae Ech1591]
          Length = 460

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/361 (16%), Positives = 106/361 (29%), Gaps = 22/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA+ G+ GKTTT  M+T         Y          G     AR+     F +     
Sbjct: 105 VIAVAGTHGKTTTAGMVT--WILEDCGYQPGFVIGGVPGNFTVSARLGDSPFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I +   
Sbjct: 163 DCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPTH 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + +         + +   G  K       K        +          EV  + +
Sbjct: 223 DLHLKQVMGMGCWSEQELVGEEGIWKA------KKVTTDASVFQVYLNDQIVGEVDWNLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A           +R            + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVTPAEACRA----LGGFINARRRLELRGTAHGVSVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P ++ A ++ L        G    +L  +       +  H       +L     V+L  
Sbjct: 333 HPTAILATLAAL----RSKVGGTARILAVLEPRSNTMKMGHCKNELAPALGRADGVFLFQ 388

Query: 409 FH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                    + A        +S  +D L   I  +   GD ++V  SN  GF  + N LL
Sbjct: 389 PQHIPWQVAEVADACVQPAWWSADIDTLVEMINKTAQPGDHILV-MSNG-GFGNIHNKLL 446

Query: 466 E 466
           +
Sbjct: 447 D 447


>gi|149195309|ref|ZP_01872397.1| hypothetical protein CMTB2_00414 [Caminibacter mediatlanticus TB-2]
 gi|149134573|gb|EDM23061.1| hypothetical protein CMTB2_00414 [Caminibacter mediatlanticus TB-2]
          Length = 292

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 36/110 (32%), Gaps = 18/110 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA----IKGPHYDGHDFILHA 60
                L+  I G  +       V   + D   ++    FFA    +          I  A
Sbjct: 1   MKIETLVNLIDGELLNRPFISEVVNFTKDIDKVSRGSCFFAEDESL----------IPFA 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI 110
           ++ GA  ++V+ D    I    I    VDD   A+ K+        K  I
Sbjct: 51  IKNGAYAIIVSKDT--KILDKEIAWIKVDDFKKAIFKIFK--YENLKHKI 96


>gi|309802461|ref|ZP_07696567.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|308220861|gb|EFO77167.1| conserved domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 93

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 14/86 (16%)

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS------------IHVHYSETMDGLFLFIQS 439
           +        +  +   G       DAL  +              V ++  +D     +  
Sbjct: 1   MGSYAVQGGVDALIAVGSRGDDALDALAEAMAQGGKQVGDVRCAVDWAHDIDQADALVSR 60

Query: 440 SL--VDGDVVVVKSSNSCGFYRLINL 463
                 G VV++K S++ G   L   
Sbjct: 61  LATEHAGTVVLLKGSHASGLSALAER 86


>gi|283953741|ref|ZP_06371272.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
 gi|283794782|gb|EFC33520.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
           [Campylobacter jejuni subsp. jejuni 414]
          Length = 427

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 57/421 (13%), Positives = 109/421 (25%), Gaps = 84/421 (19%)

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
            A++KGA                   +  V++    L           K  II ITG+ G
Sbjct: 35  QALEKGAK------------------IIDVNECKKLLKI-------DEKIKIIGITGTNG 69

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHI-----------------GVPLTLARMPVDVD 161
           KTTT   +   L  +       G+    I                  +           D
Sbjct: 70  KTTTAAAIYSILLDLGYKCGLCGTRGAFINDESIDEKTLTTSPILKTLEYLQIATQKKCD 129

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F I E+  SH          ++    + T I   HL      E    AK   F       
Sbjct: 130 FFIMEV-SSHALIQNR-IEGLKFAAKIFTNITQDHLDFHGNFENYKEAKELFFTDESLKF 187

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                          A +    +   +++G    A +Q++ +      S +         
Sbjct: 188 INK-----------DALAIKFNVCNAFTYGIENPALYQIKAYSLEEGISAIAKNKDQTFH 236

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                   +++   +  +  +  +   ++    KA+S F    GR              +
Sbjct: 237 IDSPLLGLFNLYNLLAASACVNELAKPNLKDLEKAISGFGGVCGR------VEQVAKGVI 290

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +D ++  +             ++     + I V G     G         L   +  +  
Sbjct: 291 VDFAHTPDGIE--------KVLNTLKNKKLIVVFGA----GGDRDKTKRPLMGKIVEHFA 338

Query: 402 SHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--K 450
               ++  +         +  +     +   V   E                D+VV+  K
Sbjct: 339 KIAIITSDNPRSEEPKTIMEEILLGFKKKEKVLTIEDRKEAIKKALELKEKDDLVVILGK 398

Query: 451 S 451
            
Sbjct: 399 G 399


>gi|30316070|sp|Q8RDQ1|MURD_FUSNN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
          Length = 432

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 114/353 (32%), Gaps = 47/353 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
            K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF  
Sbjct: 89  LKTKIIAITGTNGKSTTTAKISDMLNHAGY----KATYAGNIGRSLSEVLLKEKDLDFIS 144

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       +P I++I  I P H+  +   +E  + K  I +   +     
Sbjct: 145 LELSSFQLENIE----NFKPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFI 200

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD   E    +  A  I    S  K K AD  +   K              K   + 
Sbjct: 201 ENIDDEEIEKRAKQIKAKRI----SVSKFKKADIFVENDKIYH----------DKDDIID 246

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+  TL +V+          K             R     N G    I++
Sbjct: 247 VDKLSLKGIHNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELFFNYGKLKFIND 306

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K AI           G    V                 LAE++   NI  V
Sbjct: 307 SKATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEV 352

Query: 405 WLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     +++ L +           V+   ++  +           +V+++
Sbjct: 353 YLIGVIADKIENELKKVGYEDNKIHKLVNIENSLQDMRKRFTKD--SDEVILL 403


>gi|191167770|ref|ZP_03029577.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209917284|ref|YP_002291368.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SE11]
 gi|307311458|ref|ZP_07591100.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|309796081|ref|ZP_07690493.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|226706322|sp|B6HZ68|MURC_ECOSE RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|190902196|gb|EDV61938.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B7A]
 gi|209910543|dbj|BAG75617.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE11]
 gi|306908437|gb|EFN38935.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli W]
 gi|308120323|gb|EFO57585.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 145-7]
 gi|315059314|gb|ADT73641.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli W]
 gi|320200390|gb|EFW74976.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EC4100B]
 gi|323181788|gb|EFZ67201.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1357]
 gi|323380128|gb|ADX52396.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli KO11]
 gi|324017748|gb|EGB86967.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 117-3]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G +++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFNEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|296134862|ref|YP_003642104.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
 gi|295794984|gb|ADG29774.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thiomonas
           intermedia K12]
          Length = 514

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/386 (13%), Positives = 100/386 (25%), Gaps = 34/386 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG--IF 165
             I+AITG+ GKTT   +  + L     + A +    +   + +  AR+  D      + 
Sbjct: 120 PKIVAITGTNGKTTVTRLTGLMLERAGWSVA-VAGNISPSMLDVLQARLDADDLPAAWVL 178

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  +           A +  I   HL     +   A+ KA IF      G + L
Sbjct: 179 ELSSFQLHGMEGFAADA----ATVLNITQDHLDWHGDMTAYAADKANIFGNQSAQGVMVL 234

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD     ++     L    + +  +  +             ++  E            
Sbjct: 235 NRDDPQVLAMQRPGRKLRRFGLSAPQQPGDWGVVREGGIDWLARALPEEDSPRNRRGAAI 294

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDT----AIKALSVFHPKEGRGKRYRCALNQGFFTL 341
              G          L    +    +       I+                         L
Sbjct: 295 SPQGAGQGLGRPGALPEAGLQMQRLMPAEALRIQGAHNVANALAALALGDAVGAPLAPML 354

Query: 342 ID------ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM------CEMGELSQSFH 389
                   E +     ++   +  +        G  +A L  M         G+      
Sbjct: 355 HALREYRGEPHRMQTVAVIDGVRWIDDSKGTNVGATVAALAGMETPVVLIAGGDGKGQDF 414

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L    +        L G    A+   L       ++++++       +    GD  ++
Sbjct: 415 SPLRAQAARLR--AAVLIGRDAQAIAAELQGLAPTEFTQSLEQAVQLAATLAKTGDAALL 472

Query: 450 ---KSSNSC------GFYRLINLLLE 466
               +S              +  + E
Sbjct: 473 SPACASLDMFRNYAHRAEVFVAAVRE 498


>gi|145588401|ref|YP_001154998.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145046807|gb|ABP33434.1| UDP-N-acetylmuramate [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 465

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 101/371 (27%), Gaps = 31/371 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  MLT     ++      G     + +  T++    D  + + E   
Sbjct: 108 VLAVAGTHGKTTTSAMLT---WILEFNGYKPGYLIGGVPLNFTVSARLGDSQYFVIEADE 164

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F+ +  I +    +   +   G + +N 
Sbjct: 165 YDTAFFDKRSKFVHYRPRTALLNNLEFDHADIFADLAAIETQFHHLVRTVPGDGLLVVNG 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           ++   E +  +     ++      ++  +            Q   EV     + +    G
Sbjct: 225 EEVALERVITRGAWAPVERFGQDLENAWSLVSQASDGFIVRQHGKEVATVAWAPDSGVMG 284

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
               +     +       ++        A       +               F     + 
Sbjct: 285 RHNQLNALAAIAAANHIGISPKDSARALAEFKNVKRRLETIGVANGVTVYDDFAHHPTAI 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                 ++  +     ++          LG M      S            L     V+ 
Sbjct: 345 TTTVDGLRRRVGKARILAVLEPRSNTMKLGVMKAQLPGS------------LMAADKVFA 392

Query: 407 SGFHVLA------LKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
            G           L D L       +        +D L   +      GD ++V  SN  
Sbjct: 393 YGASTGKESLGWDLPDVLSPLNQTEAGKALAFNDLDALVNVVAQEARPGDHILV-MSNG- 450

Query: 456 GFYRLINLLLE 466
           GF  +   +L 
Sbjct: 451 GFGGVHQKILN 461


>gi|153951655|ref|YP_001398096.1| hypothetical protein JJD26997_0986 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939101|gb|ABS43842.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 313

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I+ A++KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NND-EKEIVQAIEKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKEIFYFRVENLEQALVRFLRFF 90


>gi|332981585|ref|YP_004463026.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
 gi|332699263|gb|AEE96204.1| UDP-N-acetylmuramate--L-alanine ligase [Mahella australiensis 50-1
           BON]
          Length = 469

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 114/403 (28%), Gaps = 46/403 (11%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA LVV       +   +     L IP     D    L ++            IA+ G+
Sbjct: 69  KGADLVVYTAAIHNDNPELNEANGLGIPTV---DRATFLGQIMKNY-----GKGIAVAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +++I L +       +          +       +  + + E       E  
Sbjct: 121 HGKTTTTSIISIILQNAGLDPTVLVGGELD---AIGGNVRVGESQYFVTEAC-----EYV 172

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P+IAVI  I   HL  F  +++I +A     +     G +    DD   E L 
Sbjct: 173 ESFLKFYPYIAVILNIERDHLDYFKDLDDIYNAFLSFAKLTPDDGYVVGCIDDPLVEQLL 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           +      I           AD      K     S+                 G H   N 
Sbjct: 233 SDMPDKAISYGIDKPAHWTADDIAFDKKGFP--SFNIYCDGLNMGRFSLSIPGRHNIYNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L ++ +  +   D++   ++L ++     R +                 +     +   A
Sbjct: 291 LASVAVADLCGIDIEMIKESLRLYKGAHRRFEVKGRLEEGVTVIDDYAHHPTEIKATIQA 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                        +          + E + +F+           I H+ ++  +     D
Sbjct: 351 ALNYPHNHIWCVFQPHTYTRTRLLLDEFASAFY----------GIDHLIITDIYAAREVD 400

Query: 417 ALP------------RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                             +  Y E    +  +I  +   GD++
Sbjct: 401 DGSINSKDLALRINQAGQNAIYMEDFSSIERYILENCQPGDII 443


>gi|254230042|ref|ZP_04923441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262392462|ref|YP_003284316.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|151937430|gb|EDN56289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
 gi|262336056|gb|ACY49851.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sp. Ex25]
          Length = 452

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/369 (14%), Positives = 101/369 (27%), Gaps = 33/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGLILAPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +  +      +     G  +     +   K        +V              
Sbjct: 223 DQALADVLERGCWTEKQFSGVEGDWQAHKLVVDGSKFEVALQGEKVG---------TVEW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVDNALMAIAAARHVGVTPELACQALGRFINTKRRLELKGEVQGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                   ++V    +  GE R +AVL       + G    +    L      ++   V+
Sbjct: 334 ---PTAIELTVGGLRNKVGEKRILAVLEPRSATMKRGVHKNTLADSL------HSADEVF 384

Query: 406 LSGFH-VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----Y 458
           L     +      +             +D     I      GD ++V  SN  GF     
Sbjct: 385 LFQPDNIEWSVQDITEQCQQPAFVDADIDNFVAKIVERAQPGDQILV-MSNG-GFGGIHG 442

Query: 459 RLINLLLEE 467
           +++  L ++
Sbjct: 443 KILEQLKQK 451


>gi|26988072|ref|NP_743497.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas putida KT2440]
 gi|37999638|sp|Q88N75|MURC_PSEPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|24982796|gb|AAN66961.1|AE016324_11 UDP-N-acetylmuramate--alanine ligase [Pseudomonas putida KT2440]
 gi|313500436|gb|ADR61802.1| MurC [Pseudomonas putida BIRD-1]
          Length = 482

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 149/427 (34%), Gaps = 55/427 (12%)

Query: 41  EAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGA 94
           E F         GH    +A    A ++VV++ +  +   ++      IPV         
Sbjct: 63  EIFV--------GHR-AENAAT--ADVLVVSSAINPANPEVATALERRIPVV----PRAE 107

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +  LA   R R     +A+ G+ GKTTT  +L    ++       +              
Sbjct: 108 M--LAELMRYRHG---VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRL---TAAGTN 159

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
                  + I E   S    +      ++P +AV+T I   H++ +     ++     E 
Sbjct: 160 AQLGTSRYLIAEADESDASFLH-----LQPMVAVVTNIDADHMATYEGDFNKLKKTFVEF 214

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L   G   +  DD     +  +     +    ++G S+ AD +    +Q   Q+   
Sbjct: 215 LHNLPFYGLAVMCLDDPVVREILPQVKRPTV----TYGFSEEADIRAINVRQQGMQTHFT 270

Query: 274 V-QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V +   + +EV  +  G H   N L T+ I +      +  ++ LS F     R + Y  
Sbjct: 271 VLRRDREPLEVSVNMPGNHNVLNALATIAIATDEGITDEAIVQGLSGFQGVGRRFQVYGE 330

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +G   ++ + Y  +P  + A I  +    P        V+         ++  + D 
Sbjct: 331 LPVEGGSVMLVDDYGHHPTEVAAVIKAVRGGWPSR----RLVIVYQPHRYSRTRDLYDDF 386

Query: 393 AEVLSLYNIS---HVWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSL 441
            +VL   N+     V+ +G           L  ++ +   +   Y E    L   ++  L
Sbjct: 387 VQVLGDANVLLLMEVYPAGEEPIPGADSRQLCHSIRQRGKLDPIYIERGAELAPLVKPLL 446

Query: 442 VDGDVVV 448
             GD+++
Sbjct: 447 RAGDILL 453


>gi|237729389|ref|ZP_04559870.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
 gi|226909118|gb|EEH95036.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter sp. 30_2]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 126/399 (31%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  ++     + V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYQQIGPQGHFTLLRQGMADLRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 EDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VL+  +      V+ +G          +L
Sbjct: 370 WPDKN----LVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAAIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     +          +   +   L   D+++V+ 
Sbjct: 426 CRTIRGRGKIDPILVSDPAQVADMLAPVLTGNDLILVQG 464


>gi|182420005|ref|ZP_02951239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           butyricum 5521]
 gi|237669516|ref|ZP_04529496.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376042|gb|EDT73629.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Clostridium
           butyricum 5521]
 gi|237654960|gb|EEP52520.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 458

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/388 (15%), Positives = 109/388 (28%), Gaps = 65/388 (16%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP-LTLARMPVDV 160
               +K  I A+TGS GKTTT  +++  L               +IG P  +      D 
Sbjct: 111 FVRYTKGKIYAVTGSDGKTTTTTIISKLLKEQGYNTWVG----GNIGTPLFSEIENIKDE 166

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L  +          IA+ T +AP HL     ++E   +K  IF    + 
Sbjct: 167 DKVVLELSSFQLMTMSEEI-----DIAICTNLAPNHLDMHKDMKEYVDSKKNIFLYQSEN 221

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             + +N ++      + +  A GI   +S  +               E   +  +     
Sbjct: 222 DVLVVNRENEITYEFEKE--AKGIVREFSSKRKIENGAYYEDGILYLEGKEVCRKEDIVI 279

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                            +   I +     ++   K    F   E R              
Sbjct: 280 K--------GMHNVENYLAAFIATKDEVSIEVMKKVAETFAGVEHRC---EFIRELDGVK 328

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             ++S  ++P    A +    +      G                   HI    +     
Sbjct: 329 YYNDSIASSPTRTLAGLKAFDKKVILIAGGY---------------DKHIPFEPLAYEGY 373

Query: 401 --ISHVWLSGFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVV---- 447
             I  + L G     ++               +  + T++      +S    GD+V    
Sbjct: 374 PYIKELILVGATSDKIEAVFKALENEKGIKTSIKRANTLEEAVSICKSIAEAGDIVTLSP 433

Query: 448 -----------VVKSSNSCGFYRLINLL 464
                      +V       F +++N L
Sbjct: 434 ACAAFDMFANFMV---RGNTFKKIVNEL 458


>gi|110640304|ref|YP_668032.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 536]
 gi|191174588|ref|ZP_03036082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300984513|ref|ZP_07177005.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|123148432|sp|Q0TLP8|MURC_ECOL5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110341896|gb|ABG68133.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli 536]
 gi|190905135|gb|EDV64780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli F11]
 gi|300306682|gb|EFJ61202.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 200-1]
 gi|324012254|gb|EGB81473.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 60-1]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/396 (12%), Positives = 101/396 (25%), Gaps = 37/396 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS 253

Query: 250 ------------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                        G   +     +  +          +    +              +  
Sbjct: 254 EDADVRVEDYQQIGPQGHFTLLRQDKEPMHVTLNAPGRHNALNAAAAVAVATEEGIDDEA 313

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +   + S                 P  G+        + G      ++      +     
Sbjct: 314 ILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDK 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +++    PH   R   +  D   +     +  +          I      G    +L   
Sbjct: 374 NLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRSLCRT 428

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     +          +   +   L   D+++V+ 
Sbjct: 429 IRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|325275010|ref|ZP_08141005.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           sp. TJI-51]
 gi|324099859|gb|EGB97710.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           sp. TJI-51]
          Length = 157

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 9/122 (7%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R +    +      D+S   N  +    ++ +  +    EG+ + + G   + G    +
Sbjct: 17  HRCQWVRERDGVNWYDDSKATNVGAA---LAAIEGLGADIEGKLVLIAGGDGK-GAEFGA 72

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +           V L G     L  AL   + +   +T+D            GD V
Sbjct: 73  LREPVKRFCRA-----VVLLGRDAERLAQALGDDVPLVRVKTLDDAVQQCAGLARAGDAV 127

Query: 448 VV 449
           ++
Sbjct: 128 LL 129


>gi|170768600|ref|ZP_02903053.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
 gi|170122704|gb|EDS91635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia albertii TW07627]
          Length = 491

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDNAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|86152077|ref|ZP_01070289.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|86153554|ref|ZP_01071758.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85840862|gb|EAQ58112.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85843280|gb|EAQ60491.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 313

 Score = 48.3 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|283783878|ref|YP_003363743.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
 gi|282947332|emb|CBG86877.1| UDP-N-acetylmuramate:alanine ligase [Citrobacter rodentium ICC168]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 127/399 (31%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  ++Q   +  +  ++     + V  +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYQQIGPQGHFSLLRQGMPELRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D +  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLAPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VL+  +      V+ +G          +L
Sbjct: 370 WPDK----HLVMLFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     +          +   +   L   D+++V+ 
Sbjct: 426 CRTIRGRGKIDPILVSDPAQVAEMLAPVLTGNDLILVQG 464


>gi|306844332|ref|ZP_07476924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
 gi|306275404|gb|EFM57145.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO1]
          Length = 467

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 113/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGVDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            S      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVMRISKEKHLDRGYFADGAKLLWSQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|271502147|ref|YP_003335173.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
 gi|270345702|gb|ACZ78467.1| UDP-N-acetylmuramate [Dickeya dadantii Ech586]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 123/403 (30%), Gaps = 39/403 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V   +  +I  +S P +  D VL          R R    +IA+ G+ GKTTT  M+T  
Sbjct: 78  VEAVLEQNIPYMSGPQWLHDHVL----------RERW---VIAVAGTHGKTTTAGMVT-- 122

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH-LVRPHIAV 188
                  Y          G     AR+     F +           +        P   +
Sbjct: 123 WILEDCGYKPGFVIGGVPGNFTVSARLGDSPFFVVEADEYDCAFFDKRSKFVHYSPRTLI 182

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  ++ I      +   +   G I +   D   + + +       + + 
Sbjct: 183 LNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGRIIVPSHDLHLKQVMSMGCWSEQELVG 242

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G  K       K        +          EV  + +G H   N LM +     +  
Sbjct: 243 EEGVWKA------KKVTTDASVFQVYLDDQLVGEVTWNLVGEHNMHNGLMAIAAARHVGV 296

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
               A +A           +R            + + +  +P ++ A ++ L        
Sbjct: 297 TPAEACRA----LGGFINARRRLELRGTAHGVSVYDDFAHHPTAILATLAAL----RSKV 348

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH-----VLALKDALPRSIH 423
           G    +L  +       +  H       SL     V+L         V  + DA  +   
Sbjct: 349 GGTARILAVLEPRSNTMKMGHCKNELAPSLGRADGVFLFQPQHIPWQVSEVADACVQ--P 406

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            ++S  +D L   +      GD ++V  SN  GF  + N LL+
Sbjct: 407 AYWSADIDTLVEMVSKVAQPGDHILV-MSNG-GFGNIHNKLLD 447


>gi|157415104|ref|YP_001482360.1| hypothetical protein C8J_0784 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386068|gb|ABV52383.1| hypothetical protein C8J_0784 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|307747745|gb|ADN91015.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931153|gb|EFV10126.1| hypothetical protein CSU_1611 [Campylobacter jejuni subsp. jejuni
           327]
          Length = 313

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|332187168|ref|ZP_08388908.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
 gi|332012868|gb|EGI54933.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           S17]
          Length = 429

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/410 (16%), Positives = 125/410 (30%), Gaps = 77/410 (18%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIAL 130
             + A+  +  +PV G  D+     +L   AR       ++ ITG+ GK+TT  ++   L
Sbjct: 79  HPLAAAARAAGVPVIG--DI-----ELFAQARKNLPPHKVVGITGTNGKSTTTALVHHIL 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +             +IG+P+       +    + EL    +     LT  +   +AV+ 
Sbjct: 132 KTAGV----PTLMGGNIGLPILGQAPLPEGGVYVLELSSYQID----LTQSLDCDVAVLL 183

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  + G    A++KA +F          +   D     +  +  A     + + 
Sbjct: 184 NITPDHLDRYDGFAGYAASKARLFAMQTAGHVAVVGTGDEASANIA-QGLAGRTDDLVTI 242

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                 D +                          HG          + +     +    
Sbjct: 243 APDTVIDQRRW---------------------PALHGPHNAQNAQAAIAVTRALGIDEAA 281

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
             A  A     P      R +    +     +++S   NP S   A++   ++     G+
Sbjct: 282 IEAGLASYASLP-----HRMQHVATRNGVAFVNDSKATNPESTAPALAAFPRVHWIVGGK 336

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---WLSGFHVLALKDALPRSIHV-HY 426
           R    GD  +                   ++ HV   +  G       D L   + V   
Sbjct: 337 RK---GDDLD---------------ACAAHLDHVVAAYTIGEAAPLFFDLLKDKVPVVEQ 378

Query: 427 SETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
           S T++   +   ++   GD V++    +S             F   +  L
Sbjct: 379 SGTLEAAVVHAAAAARPGDTVLLSPACASFDQFRDYEARGDAFRAAVEAL 428


>gi|301063251|ref|ZP_07203800.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
 gi|300442679|gb|EFK06895.1| UDP-N-acetylmuramate--L-alanine ligase [delta proteobacterium
           NaphS2]
          Length = 457

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 122/393 (31%), Gaps = 36/393 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V      +       IPV         +  LA   RL+     +AI G+ GKTTT  M
Sbjct: 74  SAVGFQNPELQEAKDRYIPVI----PRAEM--LAELMRLKYG---VAIAGAHGKTTTTSM 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L         +      I    + A++    D  + E   S           + P 
Sbjct: 125 VASILMRGGLDPTVVIGGRLDI-WGGSNAKLGQG-DVLVAETDES-----DGSFLALSPS 177

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           IAV+T I   H+ ++  +  I     +    +   G   L  D+   + +  +       
Sbjct: 178 IAVVTNIDHEHMDHYGSMAAIRRTFVDFINKIPFYGIAILCQDNEEIQGIIPQLKK---- 233

Query: 246 TIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++G S  AD + +    +    S   +        +     G H A N L    +  
Sbjct: 234 RYITYGMSTQADLRGKDLRNEKWGTSLEVIYRNNSMGRISVGMPGAHNALNALAATAVGL 293

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            L  ++    + L+       R +       +    ++ + Y  +P  + A +  +    
Sbjct: 294 ELDLEMGVIGEGLTALGGLARRLQ----IKGEKNGIMVMDDYGHHPTEIMATLKTVKTC- 348

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLA-EVLSLYNISHVWLSGFH------VLALKDA 417
              E R + V          S      ++     +  ++ ++ +G           L   
Sbjct: 349 -WSEKRLVVVFQPHRYTRTQSLLDRFVISFNDADVLLVTPIYPAGEDPIENINSENLVRE 407

Query: 418 LPRSIH--VHYSETMDGLFLFIQSSLVDGDVVV 448
           +    H  V +   +  +   +   L  GD+V+
Sbjct: 408 IKEHGHKEVIFCNDLKAVVPTLLKLLTPGDLVL 440


>gi|126696889|ref|YP_001091775.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543932|gb|ABO18174.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 476

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 114/380 (30%), Gaps = 47/380 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +  +    I V           ++ VA  +      I ITG+ GKTT   +L+  L
Sbjct: 90  DHKTIIELKKKGIKVI---------GEINVAWEILKDTNWIGITGTNGKTTVTHLLSHML 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIA 187
                          +IG PL         +   + + EL    +     ++  V+P+I 
Sbjct: 141 CDTGLYAPF----AGNIGTPLCKYAHSKKHEKIDWVVAELSSYQI----EISPEVKPNIG 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + TT    HL     +E   + K  + E  +     + + +        ++   +     
Sbjct: 193 IWTTFTEDHLERHKTLENYFNIKKSLLEKSDFRIYNYDDKNLRNHYTSLSRGVWITTSFD 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S     +     + +     +                         N+   L +++   
Sbjct: 253 KSNLIHCDYWIDDQAYIVERGK-----------KLFKLEHFSLKGMHNLQNLLLVIAAAR 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
               +  K        +    R           +I++S   N  S  A IS +       
Sbjct: 302 KVGLSGKKIKDSLSNYKQLPHRMETIYKNNDLEIINDSKATNFDSSIAGISSI------- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHV 424
           EG+ I + G   +  E S+   +   +V  +      +L G     LK AL       ++
Sbjct: 355 EGQIIIIAGGRLKGNEYSEWIKVLKKKVKCV------FLFGESSKVLKMALINEGFKENI 408

Query: 425 HYSETMDGLFLFIQSSLVDG 444
                +  L  F+   L + 
Sbjct: 409 FEFSELKELLNFVFHYLQNN 428


>gi|331650988|ref|ZP_08352016.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
 gi|331051442|gb|EGI23491.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M718]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           + +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 NDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|223984266|ref|ZP_03634411.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
 gi|223963751|gb|EEF68118.1| hypothetical protein HOLDEFILI_01705 [Holdemania filiformis DSM
           12042]
          Length = 438

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 85/277 (30%), Gaps = 34/277 (12%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P ++V   + P HL  F  ++    AK  +++         +N DD        K
Sbjct: 166 MEKFHPAVSVCMNLTPDHLDYFGSLDAYYDAKMLVWKNQTGDDWFLVNLDDPEIV----K 221

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
             A       +F   + AD        C +Q  + +  Q        H  G H  QN ++
Sbjct: 222 RCAELPCRRVTFSLDQPAD-------VCVKQDQVWLFDQPLFALSDLHLPGRHNLQNAMV 274

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
              +   L  D D   + +  F   E R                ++S   N  +   A+ 
Sbjct: 275 AAAMAVKLGVDADQIREGIRAFKGVEHRI---EFVAEIRGARYYNDSKGTNVDATTVALK 331

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              +      G            G   ++    L  VL    ++ + + G     LK   
Sbjct: 332 AFEKPVILLAG------------GYDKKTGFDGLKPVLDR--VATMIVYGETRGQLKALR 377

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVV---VKSS 452
           P +I     ET+             GD+V+   V +S
Sbjct: 378 PDAI---VVETLSEAVEQAYQLAKAGDIVLLSPVCAS 411


>gi|300721516|ref|YP_003710791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
 gi|297628008|emb|CBJ88557.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus nematophila ATCC 19061]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 108/364 (29%), Gaps = 26/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMLA---WVLEACGYKPGFLIGGVPGNFAVSAQIGESPFFVIEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R       P   ++  +   H   F  +  I      +   +  TG I +  
Sbjct: 162 YDSAFFDKRSKFVHYSPRTLIMNNLEFDHADIFENLASIQKQFHHLVRVVPSTGKIIVPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + +       + +   G  +                           EV    
Sbjct: 222 NDINLKHVLSMGCWSEQEQLGDGGSWQAKKLSQDSSNYQV------FHHGEWVGEVNWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A +AL       G     R  L           Y+
Sbjct: 276 VGEHNMHNGLMAIAAAHHIGIQPADACQAL-------GEFINARRRLELRGEVNGISVYD 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
                  A ++ L  +     G    +   + E    +    +  +++         V+L
Sbjct: 329 DFAHHPTAILATLEALRSKVGGVARIL--AVLEPRSNTMKMGMSKSDIAPSMGRADEVFL 386

Query: 407 SGF---HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
                     ++ A        +S  +D L   I  +   GD ++V  SN  GF  +   
Sbjct: 387 YQPVNMPWQVVEIAEQCVQPARWSADIDTLVRMIVETAQPGDHILV-MSNG-GFDGIHEK 444

Query: 464 LLEE 467
           LL E
Sbjct: 445 LLTE 448


>gi|119505119|ref|ZP_01627195.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
 gi|119459101|gb|EAW40200.1| UDP-N-acetylmuramate-alanine ligase [marine gamma proteobacterium
           HTCC2080]
          Length = 478

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 141/412 (34%), Gaps = 41/412 (9%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
            I HA Q   GA ++V ++ + ++    ++     +  V  A   LA   R R     IA
Sbjct: 65  HIGHAAQNIVGADVLVTSSAIPSNTPELIAARQARIPVVPRA-EMLAELMRYRQG---IA 120

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  +L        +    +     +               + I E   S  
Sbjct: 121 VAGTHGKTTTTSLLASVFGEAGEDPTFVIGGLLNNAGSNARLGAG---QYLIVEADESDA 177

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             +  L     P ++V+T +   H+ ++   I     A  +    L   G   L  DD  
Sbjct: 178 SFLHLL-----PMVSVVTNVEADHMDHYAGDIGNYEQAFLDFLHNLPFYGLAILCLDDPG 232

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME--VVHHGIG 289
            + L  +      + + ++G+   AD+ +        Q+   +          +  +  G
Sbjct: 233 VQRLLPQI----TRRVVTYGRDSEADYCVSSVAVSGLQTRFLLNRPRGRSSLSINLNMPG 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N      + + L    D     LS F     R         +G    + + Y  +
Sbjct: 289 EHNALNAAAAAAVATELGLADDAIENGLSQFSGVGRRFSPLGEVAWRGGVVQMIDDYGHH 348

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL--- 406
           P+ ++A ++          G+RI ++         ++ F+ D   V  L +   + L   
Sbjct: 349 PSEVRATLNAA---RAAFPGQRIVMVFQPHRF-SRTRDFYEDF--VAVLSDCDLLVLLDV 402

Query: 407 --------SGFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
                   +G    +L  ++ +   +   ++  +  +   +   L  GD+++
Sbjct: 403 YSAGEDHIAGADARSLARSIRQRGAIDPVFAPDIKSVPAVLCDVLEPGDLLL 454


>gi|88705706|ref|ZP_01103416.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
 gi|88700219|gb|EAQ97328.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Congregibacter litoralis KT71]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/425 (16%), Positives = 123/425 (28%), Gaps = 44/425 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVL-------GALNKLAVAARLRSKA--------- 108
           A   +   +           +  V + L        A+    +      +          
Sbjct: 45  AAAGITLHEGFDPQHLPDDALIVVGNALSRGNPAVEAVLDRGLPYLSGPQWLAEAVLADR 104

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++A++G+ GKTT   ML   L          G     + +   ++    D +F + E  
Sbjct: 105 WVLAVSGTHGKTTASSMLAWILEDAGLA---PGFLIGGVPLNFGVSARLGDGNFFVIEAD 161

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                           RP   V+  +   H   +  +  I      +   +  TG +F  
Sbjct: 162 EYDTAFFDKRAKFVHYRPRTLVVNNLEFDHADIYPDLAAIQRQFHHLIRCIPGTGRVFTP 221

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 E +         +T+   G + + +  L          W      G+ + V   
Sbjct: 222 AGIPAVEEMLELGCWTPRETLSVSGGNADWEASLDDPGASH---WALAAPGGERLSVSWG 278

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLID 343
             G H   N L        +      A++AL  F     R +             F    
Sbjct: 279 QRGAHNVANALGACAAARHVGVTPAHAVEALERFAGVRRRLELRGEVGGVRVYDDFAHHP 338

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
            +  +   +MK A      ++          +GD           H   A   S  +   
Sbjct: 339 TAIASTLRAMKGAAGRQRVLAVIEPRSNTMRMGD-----------HRA-ALAPSTVDADA 386

Query: 404 VWLSGFHVL--ALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V+      L  +L D L +S +    SE +D L   + S  + GD V+V  SN   F  +
Sbjct: 387 VFWYQPRALGWSLDDVLAKSEVPATISEDIDELIARVVSESLPGDDVLV-MSNG-AFGGI 444

Query: 461 INLLL 465
              LL
Sbjct: 445 HERLL 449


>gi|86137681|ref|ZP_01056258.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
 gi|85826016|gb|EAQ46214.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter sp. MED193]
          Length = 470

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 124/399 (31%), Gaps = 37/399 (9%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      L       +PV     V  A   LA   RL+S    IAI G+ G
Sbjct: 71  AEVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRLKSN---IAIGGTHG 121

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   + +           N  I             ++ + E   S        
Sbjct: 122 KTTTTTMMAELMVA---GKFDPTVVNGGIIHAYGSNARMGQGEWMVVEADES-----DGT 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IAV+T I P H+ ++   + +     E    +   G      D +  + L  +
Sbjct: 174 FNRLPATIAVVTNIDPEHMEHWGDFDRLRDGFHEFVSNIPFYGVAVCCSDHAEVQALVGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T     ++      L      +                     G H   N L 
Sbjct: 234 ITDRRVVTYGFNAQADVRATNLTYKAGVAHFDIHLQAEGQVIEGCSLPMPGDHNVSNALS 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L  + +   +AL+ F     R       + +     I + Y  +P  + A + 
Sbjct: 294 AVAVARHLGMNTNEIREALANFGGVNRRFT----KVGEVDGVTIIDDYGHHPVEIAAVLK 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA--EVLSLYNISHVWLSGFHV----- 411
              Q      G R+  +        LS  F    A      +  I+ V+ +G        
Sbjct: 350 AARQAIADTPGARVIAVHQPHRYSRLSDLFEDFCACFNEADVVAIAEVFAAGEDPISGAS 409

Query: 412 -LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
              L   + R  H H       D L   ++     GD+V
Sbjct: 410 RDDLVAGMIRHGHRHARALLDEDDLERLVREQARPGDMV 448


>gi|328675939|gb|AEB28614.1| Cyanophycin synthase [Francisella cf. novicida 3523]
          Length = 940

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 110/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     ++  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNVSADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----------VLALKDALPRSI----HV 424
              G+      ++LA+  + Y   +                    LK+AL  +     ++
Sbjct: 786 ---GDRRDEDIVELAKTAAPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISIDNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|157413927|ref|YP_001484793.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388502|gb|ABV51207.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 478

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 66/395 (16%), Positives = 122/395 (30%), Gaps = 53/395 (13%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           L  + ++ VA  +      I ITG+ GKTT   +L+  L               +IG PL
Sbjct: 104 LKVIGEINVAWEILKDTNWIGITGTNGKTTVTHLLSHILCDTGLYAPF----AGNIGTPL 159

Query: 152 TLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                    +   + + EL    +     ++  V+P+I + TT    HL     +E   +
Sbjct: 160 CKYAYSKKTEKIDWVVAELSSYQI----EISPEVKPNIGIWTTFTEDHLERHKTLENYFN 215

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K  + E  +     +        + L+    +L      +    K+   Q   W     
Sbjct: 216 IKKSLLEKSDFRIYNY------DDKNLRNHYSSLSRGVWITTSFDKSNFIQCDYWIDD-- 267

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                  ++                 N+   L +++       +  +        +    
Sbjct: 268 ---QAFIVERGKKLFKLEHFSLKGMHNLQNLLLVIAAARKVGLSGKEIKDSLSNYKQLPH 324

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R           +I++S   N  S  A IS +       EG+ I + G   +  E S+  
Sbjct: 325 RMETIYKNDDLEIINDSKATNFDSSIAGISSI-------EGQIIIIAGGRLKGNEYSEWI 377

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGD 445
            +   +V  +      +L G     LK AL       ++     +  L  F+   L +  
Sbjct: 378 KVLKKKVKCV------FLFGESSKVLKMALINEGFKKNIFEFSELKELLNFVFHYLQNNK 431

Query: 446 V--VVVKSS------------NSCGFYRLI-NLLL 465
           V  ++   S                F +LI   L 
Sbjct: 432 VGTLLFSPSCSSFDQFKNYEERGDYFKKLISEKLK 466


>gi|297243802|ref|ZP_06927732.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
 gi|296888223|gb|EFH26965.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis AMD]
          Length = 533

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/411 (13%), Positives = 106/411 (25%), Gaps = 72/411 (17%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  I ITG+ GKT+T EM +  L++       +     +IG  ++ A +  + D 
Sbjct: 119 RTNKPAYWIGITGTNGKTSTTEMTSAMLTTCGLNAPAV----GNIGKSVSHAALECEHDA 174

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    G+E  A  K+++F        
Sbjct: 175 LCVELSSFQLHFTDSLAL----DCAAITNIAADHLDWHGGMEAYARDKSKVFNN--VQKA 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N  D     L   +          F   +  D ++         +         +++
Sbjct: 229 LVYNAQDERVSKLADCAQVADGCKKIGFTLGEPKDGEIGVKDGWIVDNSGVAGGTKGTLK 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +              ++    +  A    A+                           +
Sbjct: 289 PIVELRELKHLCEPDGSVYPHLLADALTALALSLGLTGDVDSSVRALREFTPGGHRIQTV 348

Query: 343 DESYNANPASMKAA-----------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               + +                   +  + ++       + + G + + G         
Sbjct: 349 ATLMSEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVWIAGGLAKGGHFEDLIANQ 408

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDAL-------------PRSIHVHYSETMDGL----- 433
           L      + I  V + G     + +AL                      + +D L     
Sbjct: 409 L------HVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDCVDDLVCENI 462

Query: 434 --------------------FLFIQSSLVDGDVVVV---KSSNSCGFYRLI 461
                                         GDVV++    +S      + +
Sbjct: 463 ENTSLVNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLAPACAS----MDQFV 509


>gi|148977787|ref|ZP_01814343.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
 gi|145963001|gb|EDK28271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Vibrionales bacterium
           SWAT-3]
          Length = 452

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 65/361 (18%), Positives = 120/361 (33%), Gaps = 23/361 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          YA        +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYAPGFLVGGVLGNFSISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G IF    
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRIFSPKQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + ++      +   S G++ + D +    K   + S  EV  QG+ +  V    
Sbjct: 223 DTAIQDVLSRGCWSDAE---SSGEAGDWDAK----KLVKDGSQFEVYFQGECVGTVVWD- 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          ++ D+  + 
Sbjct: 275 -LVGDHNVNNALMAIAAARHVGVTPDLACESLAKFINTKRRLEFKGEVAGVSVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--- 405
             A        L  +    + ++I  + +              LA+ L   + ++++   
Sbjct: 334 PTA----IELTLGGLRNKVDSKKIIAVLEPRSATMKRGVHKETLADSLKQADSTYLFQPD 389

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
              + V  + DA       H S+ MD     I S    GD ++V  SN  GF  +   LL
Sbjct: 390 NIDWSVQDVADAC--HQPAHVSDDMDVFVAKIVSEAQAGDQILV-MSNG-GFGGIHQKLL 445

Query: 466 E 466
           +
Sbjct: 446 D 446


>gi|315185898|gb|EFU19663.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Spirochaeta
           thermophila DSM 6578]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 128/400 (32%), Gaps = 34/400 (8%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVA-------ARLRSKATIIAITGSVGKTTT 122
            + +       + I    V      L+ LA              ++ I+A+TGS GK+TT
Sbjct: 68  THREEDFLEADVVIKNPAVPRTSRFLS-LARHVETDISLFLKACRSPILAVTGSKGKSTT 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
              L   LS+        G+       PLT  R   +    + EL    LG++       
Sbjct: 127 ASALHHILSAAFPGARLGGNITTS---PLTFLRELSEETPVVLELSSWQLGDLGGRISFT 183

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +A +T I P H + ++ +E     K  I    + + T      D +   + A + A 
Sbjct: 184 -PQVAALTNIYPDHQNAYASMEAYVEDKFWITATQDPSQTFLYPAFDPWGRWMAANTPAT 242

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
            +     F +   +      +    E  +++   +   +       G H   N+L+   +
Sbjct: 243 ALP---FFEERPTSPPPRAAFLTEQEGLFLDHGKEIPLLPERLLVPGAHNRLNLLLAGAM 299

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                 D       LS F     R +  R           ++S    P ++ AA+S    
Sbjct: 300 AYTFGTDPALIRTRLSSFPGIPHRLELVREKGGVA---FYNDSAATIPDAVLAAVSAFEC 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                      + G   +  +LS          L+   ++   L G     L   L  S 
Sbjct: 357 -------PVHLITGGTDKNLDLSPY------RGLADKPVTVYLLEGSATRRLLPLLEESG 403

Query: 423 HVHY--SETMDGLFLFIQSSLVDGDVVVVK-SSNSCGFYR 459
             +     +++            G+VV+    + S   +R
Sbjct: 404 ISYLGPYRSLEEALAEAHHRASSGEVVLFSPGAASFEMFR 443


>gi|239616914|ref|YP_002940236.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505745|gb|ACR79232.1| FolC bifunctional protein [Kosmotoga olearia TBF 19.5.1]
          Length = 428

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 24/302 (7%)

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              VDF + E+    LG     T++V+P ++VIT     H+          + +     G
Sbjct: 133 QQKVDFAVLEV---GLGGENDATNVVKPLVSVITNSDYDHMDILGNDITSIAKEDA---G 186

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + K     +   +     +  K        IY  G+    +F     K            
Sbjct: 187 IIKENGFVVTAAEGEALDVIKKIGEEKRARIYQIGRDIKYEFVNSDLKWQRFNVKGIFSE 246

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                  +        A   +  + I+     ++       S+    E      R  + Q
Sbjct: 247 SDNLKIPLLGKYQLINASCAVGAIEILRFYDIEISD----ESIRKGLENTFWPGRFEIVQ 302

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               ++ +  + + A+ +   +++  +    +   I V+G M             + + L
Sbjct: 303 DAPMVVLDGAHNHLAAKRLKEALMEVLEKKDK--LILVIGIMK------DKEVEKIVKEL 354

Query: 397 SLYNISHVWLSGFHVLALKDA------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
           +      V  S     A          +  + ++   E ++       S   + D+V V 
Sbjct: 355 APLAYKVVATSPKTPRATTSHDLREIVVKFNKNISVVEDVETALELALSEAKENDIVCVT 414

Query: 451 SS 452
            S
Sbjct: 415 GS 416


>gi|328675678|gb|AEB28353.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Francisella cf. novicida
           3523]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 130/414 (31%), Gaps = 51/414 (12%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           ++   +   +   S P +   ++L                 +IAI G+ GKTTT  M   
Sbjct: 79  IIEKILTQKLNYFSGPQWLYQNILKY-------------KKVIAIAGTHGKTTTTTMTIK 125

Query: 129 ALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--HLVRPH 185
            L          +G  ++  GV         D ++ + E            +      P 
Sbjct: 126 ILEQAGLNPSFLVGGVSSDFGVSSR----YTDSEYFVIEADEYDTAFFDKRSKLIHYDPS 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I VI  I   H   F  I+ I     ++   +  T  I  N  D   + + +      + 
Sbjct: 182 IFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIICNDKDENVQKIISMGCWSELV 241

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + S          L   K      +    +   S+E+    IG H A N +    +   
Sbjct: 242 RVNSDTGISITKHTLDYSK------FELCNINSNSIEISWGLIGEHNALNAMSAYAVAKQ 295

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L    +    AL  F   + R       L+      + + +  +P S+K  +     +  
Sbjct: 296 LNISDEVIKDALESFKGVKRRL----EVLSHQGNVTLYDDFAHHPTSIKLTLEA---VRN 348

Query: 366 HGEGRRIAVLGDMC----EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALP 419
             +   +  L D        G+   +  + + E         V L    +L    K+ L 
Sbjct: 349 KAKEAYVIALIDPRSNTMRQGDNKDNLPMSIIE------ADRVLLYNHSLLKWDAKEVLK 402

Query: 420 RSIHVHYSETMDGLFLFIQSSLVD-GD-VV-VVKSSNSC--GF-YRLINLLLEE 467
            S +V +   +D     I   L    D  + +V  SN    G   +L+ LL  +
Sbjct: 403 NSSNVDFIANIDDFVDCIDELLTKYQDRNIQLVMMSNGSFDGLREKLVKLLETK 456


>gi|170700184|ref|ZP_02891202.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
 gi|170134916|gb|EDT03226.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           IOP40-10]
          Length = 465

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 144/412 (34%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD    A   GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAANIA---GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A ++      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATVAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL     V   +  T+D +   +     +GDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAVGKVDPVFVATVDDVPDALAGVARNGDVV 442


>gi|331681476|ref|ZP_08382113.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
 gi|331081697|gb|EGI52858.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H299]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 124/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D    ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDKAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|89256191|ref|YP_513553.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314664|ref|YP_763387.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|167009774|ref|ZP_02274705.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367519|ref|ZP_04983545.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
 gi|89144022|emb|CAJ79270.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129563|gb|ABI82750.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134253335|gb|EBA52429.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           257]
          Length = 940

 Score = 47.9 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTATPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|168333725|ref|ZP_02691978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 456

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 82/297 (27%), Gaps = 35/297 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             I  I  I P HL+    +E   +AK  IFE   K   + LN +D+    L  K+    
Sbjct: 175 CQICSILNITPDHLNRHGTMENYMAAKYRIFENGGKNVKVILNKEDAELAKLIGKTGKTE 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                      ++   + K       + ++  L    +      +      N    L  +
Sbjct: 235 --------LLFSSKESVEKGVYLENGALVDNTLGDNFVICNIDELHILGVHNYENALAAI 286

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +  A         SV     G   R             ++S   N  +    +  +   
Sbjct: 287 LMARAYGVPREIIRSVLLDFRGVAHRIEYVTTVSDVKFYNDSKATNVGAAVPGLLAMQSK 346

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI- 422
                G            G        +  E+     ++ +++ G     + +   +   
Sbjct: 347 IRLIGG------------GLDKHIEFDEWVELF-EGRVAKLYIIGETTNQIIETCKKHGF 393

Query: 423 -HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
            +    ET +       +    G+ V++    +S             F ++   L E
Sbjct: 394 HNYEAFETFEEAIKAAYNEAKRGEXVLLSPACASWDMFPSYEVRGEIFKQVALSLRE 450


>gi|117622377|ref|YP_851290.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
 gi|166224687|sp|A1A7D6|MURC_ECOK1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115511501|gb|ABI99575.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli APEC O1]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 131/401 (32%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D +  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P  +     V+         ++  + D A VL+   +  + +            G    
Sbjct: 370 WPDKK----LVMLFQPHRFTRTRDLYDDFANVLTQ--VDTLLMLEVYPAGEAPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     +          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|88704101|ref|ZP_01101816.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
 gi|88701928|gb|EAQ99032.1| UDP-N-acetylmuramate--L-alanine ligase [Congregibacter litoralis
           KT71]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/407 (15%), Positives = 125/407 (30%), Gaps = 32/407 (7%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GH     AV     +V+ +     +   ++     +  V  A   LA   R R     IA
Sbjct: 55  GHR--AAAVSDADVVVISSAVGEDNDELVAARERRIPVVRRA-EMLAELMRHRYG---IA 108

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  ++    ++       +     +               F I E   S  
Sbjct: 109 VAGTHGKTTTTSLIAAVFAAAGLDPTFVIGGRVNSTGTHAQLGAG---RFLIAEADESDA 165

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
             +      ++P + V+T I   H+  +     E+     E    L   G   L  DD  
Sbjct: 166 SFLH-----LQPMVTVVTNIEADHMETYGGDFAELRRTFVEFLHNLPFYGLAVLCVDDPV 220

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
              L A          Y F +  +      +    S +  +        + +  +  G H
Sbjct: 221 LAGLDA--DLGRPILGYGFSEHADYRISDLEPDGLSTRFVVRRPDAHPPLAISLNMPGPH 278

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              N    + + +    D      AL+ F     R   +           + + Y  +P 
Sbjct: 279 NVLNATAAVAVATDQGIDDAVIQNALANFGGVGRRFSVFDKVRIGAHEVTLVDDYGHHPT 338

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV------- 404
            + A ++   Q  P        V+         ++  + D   VLS  +   +       
Sbjct: 339 EVAATLASARQAWPER----RVVMVYQPHRFTRTRDLYDDFVSVLSETDFLVLLEVYPAG 394

Query: 405 --WLSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
              ++G    +L  ++ +   +   Y+ +   +   +   L  GD+V
Sbjct: 395 EEVITGADSRSLARSIRQRGQLDPLYAASALEVPALLVDVLEPGDIV 441


>gi|218698514|ref|YP_002406143.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI39]
 gi|218703351|ref|YP_002410870.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UMN026]
 gi|293403163|ref|ZP_06647260.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|293408182|ref|ZP_06652022.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298378693|ref|ZP_06988577.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300900878|ref|ZP_07119015.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|301026101|ref|ZP_07189576.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331661465|ref|ZP_08362389.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331671610|ref|ZP_08372408.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
 gi|226711865|sp|B7NHJ7|MURC_ECO7I RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711867|sp|B7N7W4|MURC_ECOLU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218368500|emb|CAR16235.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI39]
 gi|218430448|emb|CAR11314.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli UMN026]
 gi|291430078|gb|EFF03092.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli FVEC1412]
 gi|291472433|gb|EFF14915.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B354]
 gi|298281027|gb|EFI22528.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli FVEC1302]
 gi|300355642|gb|EFJ71512.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 198-1]
 gi|300395672|gb|EFJ79210.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 69-1]
 gi|331061380|gb|EGI33343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA143]
 gi|331071455|gb|EGI42812.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA280]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|320537962|ref|ZP_08037869.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
 gi|320145215|gb|EFW36924.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           phagedenis F0421]
          Length = 480

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 111/372 (29%), Gaps = 31/372 (8%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 + A I+A+TGS GK++T   ++     ++          N    PL        
Sbjct: 105 SVFLRLTDAPILAVTGSKGKSST---VSALQYGLQGMGFRSFLGGNITISPLDFLSETGK 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL  S          L++P +AVIT + P H + +  +E   + K  ++     
Sbjct: 162 DTPVVLEL-SSWQLADLRGKKLLKPEVAVITPVMPDHQNWYGSMEAYVADKKLLYADQTP 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               F NYDD + ++  +++ A                  L K  +   +   + +    
Sbjct: 221 EEFCFCNYDDQWGKIFASETVAQVFWYSIKPLPENLCGAWLDKSGEAFFRLHAQAEPLRL 280

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA-----------LSVFHPKEGRGK 328
               +           M     I   +     +                +V     G   
Sbjct: 281 LPNEIMVPGSILKENVMNAAAAIFLFVRKQRGSFADTALSDLELAAKLSAVMKTYPGLEH 340

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R      QG     +++    P +  AA+   ++      G            G   +  
Sbjct: 341 RLEFFYEQGGVRFYNDTTATVPEATAAALDAFTEKPVLICG------------GTDKKLD 388

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDV 446
              +AE           L+G     L   L +    +      +D L + ++  +  GD 
Sbjct: 389 FTPIAEAAGKAK-EIFLLAGTGTDLLAPLLEKKNIAYRGPFANLDDLLICVKDCVQAGDR 447

Query: 447 VVVK-SSNSCGF 457
           VV    + S G 
Sbjct: 448 VVFSPGATSFGM 459


>gi|331645201|ref|ZP_08346312.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
 gi|330909938|gb|EGH38448.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli AA86]
 gi|331045958|gb|EGI18077.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli M605]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|294791080|ref|ZP_06756238.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
 gi|294458977|gb|EFG27330.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Scardovia
           inopinata F0304]
          Length = 499

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 64/387 (16%), Positives = 115/387 (29%), Gaps = 42/387 (10%)

Query: 97  KLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           + A   R R+  +      I ITG+ GKT+T EM    L +       +     +IGVP+
Sbjct: 80  EFAWQIRARNPISGQPAAWIGITGTNGKTSTTEMTAEILQAASLAAPAV----GNIGVPV 135

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +  +    + EL    L       + ++   A IT +A  HL    G E   + KA
Sbjct: 136 SQAAVDENNQALVVELSSFQLHYT----YSLQLEAAAITNLADDHLDWHGGFENYVADKA 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +++ ++K      +         +A+   L      +     ++      +        
Sbjct: 192 RVYQHVKKALVYNADDPRVSQLARQARQAQLAQPAQLAQQAQSDSTCLQVGFTLGQPADG 251

Query: 272 MEVQLQGK-----------------SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                QG                      +    G      +   L  + +       A 
Sbjct: 252 QVGIDQGWIVSRTPLIPQGRLAALTDFPHLTEPDGTVYPHLLADALCALCLSAGYGVPAQ 311

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
            ALS        G R +        +   +S N+  +     I      + H     ++ 
Sbjct: 312 TALSALQGFAPGGHRIQKVAVYHKHSANPDSANSPSSGDIRFIDDSKATNAHAAAASLSS 371

Query: 375 LGD---MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--------- 422
             D   +   G LS+  H D         I    + G     +  +L             
Sbjct: 372 FPDQSVIWIAGGLSKGAHFDDLVAKQKKVIKAAVIIGQDQSQILHSLHSQAPDIPYTCID 431

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             H +  M        S    G+VV++
Sbjct: 432 PGHKNSIMKEAVAAAVSYAQPGNVVLL 458


>gi|227824969|ref|ZP_03989801.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
 gi|226905468|gb|EEH91386.1| UDP-N-acetylmuramate-alanine ligase [Acidaminococcus sp. D21]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 67/411 (16%), Positives = 134/411 (32%), Gaps = 45/411 (10%)

Query: 56  FILHA---VQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRS 106
           FI HA   +++ A ++VV+T +      L       +PV    DVL  L           
Sbjct: 56  FIGHAACQIER-AEVIVVSTAIHPDNPELVEAHKRGVPVIHRSDVLAYLMN--------- 105

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K   IA+ G+ GKTTT  ML++                  +   L    +    D+ + E
Sbjct: 106 KHKGIAVAGAHGKTTTSSMLSLITCDNGID---PTVVVGGVVNNLGTNSVNGKSDYVVAE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S            RP++AVIT I   HL ++   E+I  A  +  + +++ G   L 
Sbjct: 163 ADES-----DGSFLKFRPYLAVITNIENDHLDHYGTEEKIQEAFQQFVDQVKEQGKAILC 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           YD+     +  K+       + S+G          +  +  +       L         H
Sbjct: 218 YDNEKVRRVGEKT----ATEVISYGIDAKDADYRAENIEYGKDGTHYDILFRGKKIGKGH 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            I       +     + +     +     + S+      + +       +G + + D ++
Sbjct: 274 LIVPGRHNVLNALGALAAARELGLSVEEISRSLEKFTGAKRRFETKGRVRGIWVVDDYAH 333

Query: 347 NANPASMK-------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           +     +            ++    PH   R   +L +     + +      +   +   
Sbjct: 334 HPTEIKVTLKAARQTQPKRLIVVFQPHRYTRTQLLLDEFAVAFKEADEL---IVTDIYAA 390

Query: 400 NISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +   +   G     L + + R     V Y    + +  ++      GD+V+
Sbjct: 391 SEDPI--PGISGKMLAETIQRTTGQDVSYMSGFESIKNYLVDHAAAGDLVM 439


>gi|188532903|ref|YP_001906700.1| UDP-N-acetylmuramate--L-alanine ligase [Erwinia tasmaniensis
           Et1/99]
 gi|188027945|emb|CAO95802.1| UDP-N-acetylmuramate-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 500

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 130/399 (32%), Gaps = 43/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   
Sbjct: 100 DNPEVVAAREARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIY 150

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +            N  +              + I E   S    +      ++P +A++T
Sbjct: 151 AE---GGLDPTFVNGGLVKAAGTHARLGSSRYLIAEADESDASFLH-----LQPMVAIVT 202

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   L  DD+    L  +      + I +
Sbjct: 203 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVLCVDDTVIRELIPRV----GRQITT 258

Query: 250 FGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  V+     M+V  +  G H A N    + + +    
Sbjct: 259 YGFSEDADVRVENYRQRGAQGHFTLVRQDKPLMQVTLNAPGRHNALNAAAAVAVATEENI 318

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D +  + AL  F     R                   ++ + Y  +P  +   I      
Sbjct: 319 DDEDILAALESFQGTGRRFDFLGEYPLAQVNGSAGTAMLVDDYGHHPTEVDVTIKAARAG 378

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLAL 414
            P        V+         ++  + D A VLS  ++     V+ +G          +L
Sbjct: 379 WPDKN----LVMIFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYSAGETPIPGADSRSL 434

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V        D +   +   L   D+++V+ 
Sbjct: 435 CRTIRGRGKVDPILVSDHDAVLEMLLPKLTGNDLILVQG 473


>gi|156502247|ref|YP_001428312.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|290954334|ref|ZP_06558955.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312242|ref|ZP_06803040.1| cyanophycin synthetase [Francisella tularensis subsp. holarctica
           URFT1]
 gi|156252850|gb|ABU61356.1| UDP-N-acetylmuramyl tripeptide synthase with glutame ligase domain
           [Francisella tularensis subsp. holarctica FTNF002-00]
          Length = 940

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/385 (13%), Positives = 108/385 (28%), Gaps = 45/385 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLT 152
              ++  I AITG+ GKTTT  M+     +  K                +       P +
Sbjct: 489 YGNARIPIAAITGTNGKTTTSRMVAHMWKNAGKVVGLTTTDGVYINGKLTVAGDTTGPAS 548

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS--NFSGIEEIASAK 210
              +  D    +  L  +  G +R        ++     I+  HL     + +E++A  K
Sbjct: 549 AQMVLKDPSVEMAILETARGGLLRSGLGYDYCNVGACLNISADHLGLKGINTLEDLAKVK 608

Query: 211 AEIFEGLEK------------TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
           + + E  +               +  +     F+  +  +   +                
Sbjct: 609 SIVVEAAKDVAVLNADDPNVLKMSAKVTAKHIFYVTMNPEHALVKQHIRAGGKACIIEKG 668

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    +       L    +     G   H  QN +  + I   +   +D     L 
Sbjct: 669 VNGDMITIFDNHIHIPVLWTHLIPATMEGKAIHNVQNSMFAIAICYSMGMSLDDMRDGLR 728

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F     +         +  F ++ +            +     ++    G++I VL   
Sbjct: 729 TFVTSFYQAPGRMNWFEEHPFKVLMDY---GHNPAAIKLVSQMIMNMEFAGKKICVLASP 785

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--------------VLALKDALPRSIHV 424
              G+       +LA+  + Y   +                       AL +A   + ++
Sbjct: 786 ---GDRRDEDIAELAKTATPYY-DYFICKRDDDTRGRAPDEVPRILKEALIEAGISADNI 841

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVV 449
              E+         +   +GD+VV+
Sbjct: 842 EIIESEKEAVDAALNMAEEGDLVVI 866


>gi|19704790|ref|NP_604352.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
 gi|19715127|gb|AAL95651.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. nucleatum ATCC 25586]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 114/353 (32%), Gaps = 47/353 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
            K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF  
Sbjct: 111 LKTKIIAITGTNGKSTTTAKISDMLNHAGY----KATYAGNIGRSLSEVLLKEKDLDFIS 166

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  I       +P I++I  I P H+  +   +E  + K  I +   +     
Sbjct: 167 LELSSFQLENIE----NFKPCISMIINIGPDHIERYKSFDEYYNTKFNITKNQTEDLYFI 222

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD   E    +  A  I    S  K K AD  +   K              K   + 
Sbjct: 223 ENIDDEEIEKRAKQIKAKRI----SVSKFKKADIFVENDKIYH----------DKDDIID 268

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +      N+  TL +V+          K             R     N G    I++
Sbjct: 269 VDKLSLKGIHNLENTLFMVATAEILKLDREKLKEFLMIATPLEHRTELFFNYGKLKFIND 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K AI           G    V                 LAE++   NI  V
Sbjct: 329 SKATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEV 374

Query: 405 WLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     +++ L +           V+   ++  +           +V+++
Sbjct: 375 YLIGVIADKIENELKKVGYEDNKIHKLVNIENSLQDMRKRFTKD--SDEVILL 425


>gi|110804155|ref|YP_687675.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella flexneri 5 str.
           8401]
 gi|123343170|sp|Q0T8A6|MURC_SHIF8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110613703|gb|ABF02370.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella flexneri 5 str. 8401]
 gi|332762093|gb|EGJ92362.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri 4343-70]
 gi|333009336|gb|EGK28792.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-218]
 gi|333010587|gb|EGK30020.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri VA-6]
 gi|333011479|gb|EGK30893.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-272]
 gi|333021722|gb|EGK40971.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri K-227]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|15799775|ref|NP_285787.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           EDL933]
 gi|15829349|ref|NP_308122.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. Sakai]
 gi|26246024|ref|NP_752063.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli CFT073]
 gi|91209155|ref|YP_539141.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UTI89]
 gi|157154862|ref|YP_001461261.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli E24377A]
 gi|157159562|ref|YP_001456880.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli HS]
 gi|168751399|ref|ZP_02776421.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755699|ref|ZP_02780706.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764030|ref|ZP_02789037.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771315|ref|ZP_02796322.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776935|ref|ZP_02801942.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781976|ref|ZP_02806983.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789618|ref|ZP_02814625.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|168801518|ref|ZP_02826525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|170683694|ref|YP_001742213.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli SMS-3-5]
 gi|193065876|ref|ZP_03046937.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|193070828|ref|ZP_03051761.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194429353|ref|ZP_03061878.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194434422|ref|ZP_03066684.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194439419|ref|ZP_03071496.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|195939307|ref|ZP_03084689.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. EC4024]
 gi|208806463|ref|ZP_03248800.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812324|ref|ZP_03253653.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819975|ref|ZP_03260295.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400617|ref|YP_002268699.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|215485257|ref|YP_002327688.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325189|ref|ZP_03441273.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552674|ref|YP_002385587.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli IAI1]
 gi|218557031|ref|YP_002389944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli S88]
 gi|218687968|ref|YP_002396180.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ED1a]
 gi|218693560|ref|YP_002401227.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 55989]
 gi|237704240|ref|ZP_04534721.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|253774879|ref|YP_003037710.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160213|ref|YP_003043321.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|254791228|ref|YP_003076065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|256020071|ref|ZP_05433936.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sp. D9]
 gi|260842327|ref|YP_003220105.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260866244|ref|YP_003232646.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261226848|ref|ZP_05941129.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261255252|ref|ZP_05947785.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291280916|ref|YP_003497734.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|293417967|ref|ZP_06660589.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|293476751|ref|ZP_06665159.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|297518216|ref|ZP_06936602.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli OP50]
 gi|300816129|ref|ZP_07096352.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|300821904|ref|ZP_07102048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300931782|ref|ZP_07147082.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300938486|ref|ZP_07153226.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300981128|ref|ZP_07175374.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|301048483|ref|ZP_07195508.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|306815311|ref|ZP_07449460.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|312966219|ref|ZP_07780445.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|331661137|ref|ZP_08362069.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331666328|ref|ZP_08367209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331680665|ref|ZP_08381324.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332281221|ref|ZP_08393634.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|54037856|sp|P65471|MURC_ECO57 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041506|sp|P65470|MURC_ECOL6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|122425020|sp|Q1RGA4|MURC_ECOUT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017280|sp|A7ZHI2|MURC_ECO24 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|167017281|sp|A7ZW43|MURC_ECOHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706321|sp|B5YZC7|MURC_ECO5E RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711864|sp|B7MAL4|MURC_ECO45 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711866|sp|B7M134|MURC_ECO8A RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226711868|sp|B1LG28|MURC_ECOSM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766001|sp|B7UIE1|MURC_ECO27 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766002|sp|B7LFW1|MURC_ECO55 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766003|sp|B7MNV0|MURC_ECO81 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|12512797|gb|AAG54395.1|AE005186_1 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Escherichia coli O157:H7 str. EDL933]
 gi|26106421|gb|AAN78607.1|AE016755_107 UDP-N-acetylmuramate--alanine ligase [Escherichia coli CFT073]
 gi|13359551|dbj|BAB33518.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli O157:H7 str.
           Sakai]
 gi|91070729|gb|ABE05610.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli UTI89]
 gi|157065242|gb|ABV04497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli HS]
 gi|157076892|gb|ABV16600.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E24377A]
 gi|170521412|gb|ACB19590.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli SMS-3-5]
 gi|187767764|gb|EDU31608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014538|gb|EDU52660.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000410|gb|EDU69396.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357039|gb|EDU75458.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359896|gb|EDU78315.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365892|gb|EDU84308.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370793|gb|EDU89209.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC869]
 gi|189376362|gb|EDU94778.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC508]
 gi|192926463|gb|EDV81096.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E22]
 gi|192955858|gb|EDV86328.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E110019]
 gi|194412573|gb|EDX28870.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli B171]
 gi|194417338|gb|EDX33445.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1012]
 gi|194421678|gb|EDX37688.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 101-1]
 gi|208726264|gb|EDZ75865.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733601|gb|EDZ82288.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740098|gb|EDZ87780.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162017|gb|ACI39450.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746534|gb|ACI71574.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746536|gb|ACI71575.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746538|gb|ACI71576.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746540|gb|ACI71577.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|209746542|gb|ACI71578.1| UDP-N-acetyl-muramate:alanine ligase [Escherichia coli]
 gi|215263329|emb|CAS07644.1| UDP-N-acetylmuramate: L-alanine ligase [Escherichia coli O127:H6
           str. E2348/69]
 gi|217321410|gb|EEC29834.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350292|emb|CAU95975.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli 55989]
 gi|218359442|emb|CAQ96980.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli IAI1]
 gi|218363800|emb|CAR01460.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli S88]
 gi|218425532|emb|CAR06315.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli ED1a]
 gi|222031922|emb|CAP74660.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli LF82]
 gi|226902152|gb|EEH88411.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 3_2_53FAA]
 gi|242375927|emb|CAQ30608.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli BL21(DE3)]
 gi|253325923|gb|ACT30525.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972114|gb|ACT37785.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli B str.
           REL606]
 gi|253976323|gb|ACT41993.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli BL21(DE3)]
 gi|254590628|gb|ACT69989.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O157:H7
           str. TW14359]
 gi|257757474|dbj|BAI28971.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257762600|dbj|BAI34095.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281177311|dbj|BAI53641.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli SE15]
 gi|284919871|emb|CBG32926.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli 042]
 gi|290760789|gb|ADD54750.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. CB9615]
 gi|291321204|gb|EFE60646.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B088]
 gi|291430685|gb|EFF03683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli B185]
 gi|294492769|gb|ADE91525.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli IHE3034]
 gi|300299669|gb|EFJ56054.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 185-1]
 gi|300409030|gb|EFJ92568.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 45-1]
 gi|300456555|gb|EFK20048.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 21-1]
 gi|300460442|gb|EFK23935.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 187-1]
 gi|300525504|gb|EFK46573.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 119-7]
 gi|300531336|gb|EFK52398.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 107-1]
 gi|305850973|gb|EFM51428.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli NC101]
 gi|307629665|gb|ADN73969.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli UM146]
 gi|312289462|gb|EFR17356.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 2362-75]
 gi|312944697|gb|ADR25524.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315285163|gb|EFU44608.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 110-3]
 gi|315294714|gb|EFU54057.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 153-1]
 gi|315300008|gb|EFU59246.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 16-3]
 gi|320179653|gb|EFW54602.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii ATCC 9905]
 gi|320190386|gb|EFW65036.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197458|gb|EFW72072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli WV_060327]
 gi|320642130|gb|EFX11481.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. G5101]
 gi|320647493|gb|EFX16288.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. 493-89]
 gi|320652827|gb|EFX21065.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H-
           str. H 2687]
 gi|320658216|gb|EFX25945.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663525|gb|EFX30809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668837|gb|EFX35632.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli O157:H7
           str. LSU-61]
 gi|323160111|gb|EFZ46072.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli E128010]
 gi|323171254|gb|EFZ56902.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli LT-68]
 gi|323176399|gb|EFZ61991.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1180]
 gi|323935143|gb|EGB31510.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1520]
 gi|323945720|gb|EGB41768.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H120]
 gi|323950913|gb|EGB46790.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H252]
 gi|323955289|gb|EGB51062.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H263]
 gi|323960037|gb|EGB55683.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli H489]
 gi|323964813|gb|EGB60280.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli M863]
 gi|323970763|gb|EGB66017.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TA007]
 gi|323975745|gb|EGB70841.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli TW10509]
 gi|324008326|gb|EGB77545.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 57-2]
 gi|324118441|gb|EGC12335.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E1167]
 gi|326345189|gb|EGD68932.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1125]
 gi|326346957|gb|EGD70691.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli O157:H7 str.
           1044]
 gi|327255069|gb|EGE66672.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli STEC_7v]
 gi|331052179|gb|EGI24218.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA206]
 gi|331066539|gb|EGI38416.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli TA271]
 gi|331072128|gb|EGI43464.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H591]
 gi|332095382|gb|EGJ00405.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 5216-82]
 gi|332097809|gb|EGJ02782.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 155-74]
 gi|332103573|gb|EGJ06919.1| UDP-N-acetylmuramate-alanine ligase [Shigella sp. D9]
 gi|332341423|gb|AEE54757.1| UDP-N-acetylmuramate--alanine ligase MurC [Escherichia coli UMNK88]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|320539530|ref|ZP_08039197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
 gi|320030383|gb|EFW12395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Serratia symbiotica str. Tucson]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 68/364 (18%), Positives = 116/364 (31%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M+T  L +       I       GVP             F + E 
Sbjct: 105 VLAVAGTHGKTTTAGMVTWVLEACGYQPGFIIG-----GVPGNFEVSARLGGSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   V++ +   H   F  ++ I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRAKFMHYSPRTLVMSNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D+  + + A          +S  +    +      K   + S   V L G+ +  V 
Sbjct: 220 PDNDNHLKQVMA-------MGCWSEQELVGEEGTWCAQKLTPDASCYAVFLNGEQVGEV- 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    NM   L  ++           A           +R          T+ D+ 
Sbjct: 272 -QWALVGEHNMHNGLMAIAATRHVGVQPADACRALGNFINARRRLELCGEANGVTVYDDF 330

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
             A+  +   A     +    G  R +AVL       ++  S H +LA  L       V+
Sbjct: 331 --AHHPTAILATLAALRAKVGGTARILAVLEPRSNTLKMGISKH-ELAPSLGRA--DEVF 385

Query: 406 LSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L     +   +   +   +   H+S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPPNIPWQVAQVVESCVQPAHWSADLDILVEMIVKTTQPGDYILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 RLLA 447


>gi|296101007|ref|YP_003611153.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295055466|gb|ADF60204.1| putative ligase [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 457

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 110/366 (30%), Gaps = 32/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     LK              G+  +   +           W       K  EV    +
Sbjct: 223 DIN---LKQTMAMGCWSEQELVGEQGHWQAKKLNVDASE---WEVWLDGEKVGEVKWGLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A  A           +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVQPADAANA----LGSFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  +MG         L           V+
Sbjct: 333 HPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGICKDDLAPSLGR------ADEVF 385

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + DA  +    H+S  +D L   +  +   GD ++V  SN  GF  +
Sbjct: 386 LLQPQHIPWQVAEVADACIQ--PAHWSADVDALADMVVKAAQPGDHILV-MSNG-GFGGI 441

Query: 461 INLLLE 466
              LL+
Sbjct: 442 HQKLLD 447


>gi|157147485|ref|YP_001454804.1| UDP-N-acetylmuramate--L-alanine ligase [Citrobacter koseri ATCC
           BAA-895]
 gi|166222972|sp|A8ALK5|MURC_CITK8 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157084690|gb|ABV14368.1| hypothetical protein CKO_03284 [Citrobacter koseri ATCC BAA-895]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/398 (15%), Positives = 120/398 (30%), Gaps = 41/398 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +         +S
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFS 253

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                  +      +   +  +  ++    +M+V  +  G H A N    + + +    D
Sbjct: 254 DDADVRVEEYQ---QVGPQGHFTLLRQDKPAMQVTLNAPGRHNALNAAAAVAVATEEGID 310

Query: 310 VDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +  ++AL  F     R              +    ++ + Y  +P  + A I       
Sbjct: 311 DEAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGW 370

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF------HVLALK 415
           P        V+         ++  + D A VL+  +      V+ +G          +L 
Sbjct: 371 PDKN----LVMVFQPHRFTRTRDLYDDFANVLTQVDALLMLDVYAAGEAPIPGADSRSLC 426

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +     +          +   +   L   D+++V+ 
Sbjct: 427 RTIRGRGKIDPILVSDPAQVAQMLAPVLTGNDLILVQG 464


>gi|87307078|ref|ZP_01089224.1| UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Blastopirellula marina DSM 3645]
 gi|87290451|gb|EAQ82339.1| UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Blastopirellula marina DSM 3645]
          Length = 348

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGH-DFILHAVQ 62
           T   L   ++G   G   Q  ++G SI  DS    P E   A      D H        +
Sbjct: 4   TLGQLASLVEGTLHG-DAQLEISGASIIRDS---QPGEITLA------D-HPKLAKDLAR 52

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
             A  V+ +           +PV  V +V  A  K+    R   
Sbjct: 53  CSAAAVLAS----GEFAPADMPVIVVANVHDAFAKIVAQFRPNL 92


>gi|83858729|ref|ZP_00952251.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Oceanicaulis
           alexandrii HTCC2633]
 gi|83853552|gb|EAP91404.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Oceanicaulis
           alexandrii HTCC2633]
          Length = 438

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/372 (14%), Positives = 101/372 (27%), Gaps = 58/372 (15%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T+I +TG+ GK+TT  +L   L ++            +IG P+       D +  + EL 
Sbjct: 108 TVIGVTGTKGKSTTSSLLHHMLKALDVN----AVLAGNIGEPVIDTS--EDAEIVVLELS 161

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              + ++        P   +   +   H     G+E+    KA +         +    D
Sbjct: 162 SYQIADLVHA-----PDWFIFLNLLNDHAPWHRGVEQYRRDKARLAMLDPNARGVMSARD 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                L   +                  D  +    +   +          +       +
Sbjct: 217 SRLNALFVHR---PNTVWYDQSEGFHAPDGVIHHGAEAWGRIPALPGAHNAANACAALAV 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +  +       +S                    G   R            ID++   
Sbjct: 274 IEGLGLSAYEAFESLSSFK-----------------GLAHRLETVHTLNGVDFIDDTLCT 316

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYNISHVWLS 407
            P S   A      ++   +     +LG     GE  +  +  LAE L     I  +   
Sbjct: 317 TPQSCLLA------LAAFPDRPISLILG-----GEDREQDYAPLAEGLRDETRIKAIVTI 365

Query: 408 GFHVLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVK------------SS 452
             +  A+ +AL    H     Y    +        +L DG +V++              +
Sbjct: 366 PENGPAIIEALKSGPHADITTYEPDFELAVKRAYEALPDGGIVMMSPAAPRGAAFTYFGA 425

Query: 453 NSCGFYRLINLL 464
               F +    L
Sbjct: 426 RGDAFTQAAKKL 437


>gi|254303962|ref|ZP_04971320.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324154|gb|EDK89404.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 432

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 116/353 (32%), Gaps = 47/353 (13%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGI 164
            K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF  
Sbjct: 89  LKTKIIAITGTNGKSTTTAKISDMLNHAGY----KAAYAGNIGRSLSEVLLKEKDLDFIS 144

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    L  +       +P+I++I  + P H+  +   +E    K  I +   +     
Sbjct: 145 LELSSFQLENVE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNIVKNQTEDLYFI 200

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N DD   E    +  A  I    S  K K AD  ++  K C  ++ +    +       
Sbjct: 201 ENIDDVEIEKRAKQIKAKRI----SVSKFKKADIFVKNDKICHGENTIIDVDKLS----- 251

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N+  TL +V+          K             R     N G    I++
Sbjct: 252 -----LKGIHNLENTLFMVATAEILKIDKEKLKEFLMIATPLEHRTELFFNYGKLKFIND 306

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S K AI           G    V                 LAE++   NI  V
Sbjct: 307 SKATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEV 352

Query: 405 WLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +L G     ++  L +           V+   ++  +           +V+++
Sbjct: 353 YLIGVIADKIESELKKIGYEDSKIHKLVNIENSLQDMKKRFTKD--SDEVILL 403


>gi|310819950|ref|YP_003952308.1| UDP-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309393022|gb|ADO70481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 488

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 115/387 (29%), Gaps = 28/387 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L      +S + ++A  G+ GKTTT  ++   L    K           +        
Sbjct: 111 AALGALFLKQSHSVVVA--GTHGKTTTSSLMAHVLVDAGKD---PSFLVGGVTQNYAGNY 165

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + E                  +P  A++T++   H   F  +    +   + 
Sbjct: 166 RVGKGPHFVVEGDEYDTAYWDKGSKFLHYQPRTAILTSVEFDHADIFRDLPHYEATFEKF 225

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G + +         +   + A  +  +   G   +   +   +       +  
Sbjct: 226 VRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREGAQADYTPRKVSFGAE-GARFEV 284

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V+             G H  +N L  +     L    +   + LS F   + R    +  
Sbjct: 285 VERGTVLGTARMELTGLHNVENALSVIAAARGLGLSFEEIARGLSSFRGVKRR----QEV 340

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSFH 389
             +    L+ + +  +P +++  I+ + Q  P  E R  A+                  H
Sbjct: 341 RGEPGGILVVDDFAHHPTAVRETIAAIRQRYP--ERRLWALFEPRSNTSRRNIHQEDYAH 398

Query: 390 IDLAEVLSLYNI----SHVWLSGF-HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
                  +   +      V       V  L +AL  + I   ++  +  L   +    + 
Sbjct: 399 AFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQGIQADHASDVPSLLERVTREALR 458

Query: 444 GDVVVVKSSNSC--GF-YRLINLLLEE 467
           GDV++V  SN    GF  +++  L   
Sbjct: 459 GDVLLV-MSNGAFGGFIDKVLAALQAR 484


>gi|115374632|ref|ZP_01461911.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368398|gb|EAU67354.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 431

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 115/387 (29%), Gaps = 28/387 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             L      +S + ++A  G+ GKTTT  ++   L    K           +        
Sbjct: 54  AALGALFLKQSHSVVVA--GTHGKTTTSSLMAHVLVDAGKD---PSFLVGGVTQNYAGNY 108

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                   + E                  +P  A++T++   H   F  +    +   + 
Sbjct: 109 RVGKGPHFVVEGDEYDTAYWDKGSKFLHYQPRTAILTSVEFDHADIFRDLPHYEATFEKF 168

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G + +         +   + A  +  +   G   +   +   +       +  
Sbjct: 169 VRLIPPEGQLVVCAAYPNALRIAGGTRARVVTYVAREGAQADYTPRKVSFGAE-GARFEV 227

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           V+             G H  +N L  +     L    +   + LS F   + R    +  
Sbjct: 228 VERGTVLGTARMELTGLHNVENALSVIAAARGLGLSFEEIARGLSSFRGVKRR----QEV 283

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL----SQSFH 389
             +    L+ + +  +P +++  I+ + Q  P  E R  A+                  H
Sbjct: 284 RGEPGGILVVDDFAHHPTAVRETIAAIRQRYP--ERRLWALFEPRSNTSRRNIHQEDYAH 341

Query: 390 IDLAEVLSLYNI----SHVWLSGF-HVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVD 443
                  +   +      V       V  L +AL  + I   ++  +  L   +    + 
Sbjct: 342 AFTGAARASLKVPERHDKVPTHEELDVPRLCEALKAQGIQADHASDVPSLLERVTREALR 401

Query: 444 GDVVVVKSSNSC--GF-YRLINLLLEE 467
           GDV++V  SN    GF  +++  L   
Sbjct: 402 GDVLLV-MSNGAFGGFIDKVLAALQAR 427


>gi|54307599|ref|YP_128619.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
 gi|46912022|emb|CAG18817.1| putative UDP-N-acetylmuramate-alanine ligase [Photobacterium
           profundum SS9]
          Length = 452

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 103/364 (28%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVAGTHGKTTTASMLA--WILEDCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLKAIQRQFHHLVRTVPSNGRILAPKG 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               +              +S  +    D      KQ ++ S  +V L G  +       
Sbjct: 223 VESIQQTLD-------MGCWSELEFTGDDGHWIAKKQVADGSVFDVYLDGLMIG--TVRW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T               +R           + D+  + 
Sbjct: 274 DLVGDHNVNNALMAIAAARHVGVTPDLGCEALATFINTKRRLELKGEVKGVKVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS 407
                  AI +         G    +L  + E    +    +   ++  +L     V++ 
Sbjct: 334 -----PTAIELTLGGLRAKIGDEQRILA-VLEPRSNTMKLGVHKGDIAPALNAADCVFIF 387

Query: 408 GFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                      + DA  +         +D L   I + +  GD ++V  SN  GF  + +
Sbjct: 388 QPETIPWSVNEIADACSQ--PAVTDTNLDKLVAEIVAEVKSGDTILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 KLLA 447


>gi|315635954|ref|ZP_07891215.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
 gi|315479738|gb|EFU70410.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Arcobacter butzleri JV22]
          Length = 429

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 51/433 (11%), Positives = 115/433 (26%), Gaps = 54/433 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           + +S        F  I    ++   +I +A + G    + + ++   +   SI + G   
Sbjct: 11  TDNSAEADKNSIFV-I--SKHN-EKYIQNAKENGCIEFLNSGELKNHLDMSSIKIIG--- 63

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-V 149
                       +  +  TI  I  S+G     +       +  +      +    +G  
Sbjct: 64  ------ITGTNGKTTTATTIYKILLSLGFKVALQGTRGFFINETQVEDYSLTTPIQLGNF 117

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +     F + E+  S     +     +   + + T I   HL     IEE    
Sbjct: 118 VHIQKAIQNGCQFFVMEV--SSHAIEQNRIEGLTFALKIHTNITRDHLDYHKTIEEYIRV 175

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K                        +            +++     +D+++ K++     
Sbjct: 176 KNSFLSDDSVK-----------LVNIDDNVMKYNFTNAFTYSLKNLSDYKVSKYEFEH-G 223

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +E   + K+       +G     N++ ++  V I T      I        K      
Sbjct: 224 MKVEFSYKEKTYTFTSMMMGIFNIYNLIASIAAVHITTQKSLEDI----CQTLKNFSCVS 279

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  +      +I +  +           +   +        I V G     G    S  
Sbjct: 280 GRMEIVSLNPLIIVDFAHTPDG-------MDEVLKSFPNKDIICVFGA----GGNRDSAK 328

Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
             L   ++     H+ ++  +            +   +    +V              S 
Sbjct: 329 RPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKEALKKAISL 388

Query: 441 LVDGDVVVV--KS 451
             +  V++V  K 
Sbjct: 389 ANEKSVILVLGKG 401


>gi|291557934|emb|CBL35051.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum V10Sc8a]
          Length = 438

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 106/343 (30%), Gaps = 40/343 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II ITG+ GK+TT  ++   +    K    IG+       PL          
Sbjct: 101 FLRFCDNMIIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVP---PLERREEFTKDC 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L           P +AV+  + P HL +++      +AK  IF    +  
Sbjct: 158 VIVCEMSCHQL-----EYVKASPDVAVLLNVYPEHLDHYTDFAAYRNAKLNIFRYQNEND 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T+ +  +   ++  KA+    G                                    + 
Sbjct: 213 TLIIGEEVKQYDDTKARVITAG---------------FSCGDIGTRNGGIFIGDEFYPAD 257

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H   N+ + +   +     V   + AL  F   E R               
Sbjct: 258 MIDTKLKGEHNLYNIAIAIYAATKAGCTVKQCLDALPQFCGLEHRL---EYVCTLNGAEY 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYN 400
           I++S +  P +  AA+                ++G M          + +L++ L +  +
Sbjct: 315 INDSISTAPQTAIAALKAY-------PDTDTLIIGGM-----DRGIPYDELSDWLSADTS 362

Query: 401 ISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
           + ++ +       + + +    + + Y++ M+    + +    
Sbjct: 363 VRNLIILPDSGKRVAEKVTNPLVKLIYADDMEQAVKYAKQVTK 405


>gi|283783550|ref|YP_003374304.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
 gi|283441283|gb|ADB13749.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis 409-05]
          Length = 533

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 61/406 (15%), Positives = 110/406 (27%), Gaps = 62/406 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  I ITG+ GKT+T EM +  L++       +     +IG  ++ A +  + D 
Sbjct: 119 RTNKPAYWIGITGTNGKTSTTEMTSAMLTACGLNAPAV----GNIGKSVSHAALECEHDA 174

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    G+E  A  K+++F        
Sbjct: 175 LCVELSSFQLHFTDSLAL----DCAAITNIAADHLDWHGGMESYARDKSKVFNN--VQKA 228

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N  D     L   +          F   +  D ++         +         +++
Sbjct: 229 LVYNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNSGVAGGTKGTLK 288

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +              ++    +  A    A+         +   +  R     G     
Sbjct: 289 PIVELRELKHLCEPDGSVYPHLLADALTALALALGLTGD-VDSSVRALREFAPGGHRIQT 347

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------MGELSQSFHIDLAEVL 396
             +  +   +    I  +            A L            G L++  H +     
Sbjct: 348 VATLMSEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVWIAGGLAKGGHFEDLIAN 407

Query: 397 SLYNISHVWLSGFHVLALKDAL-------------PRSIHVHYSETMDGL---------- 433
            L+ I  V + G     + +AL                      + +D L          
Sbjct: 408 QLHVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDCVDDLVCEYIENTSL 467

Query: 434 ---------------FLFIQSSLVDGDVVVV---KSSNSCGFYRLI 461
                                    GDVV++    +S      + +
Sbjct: 468 VNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLAPACAS----MDQFV 509


>gi|157147793|ref|YP_001455112.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
 gi|157084998|gb|ABV14676.1| hypothetical protein CKO_03597 [Citrobacter koseri ATCC BAA-895]
          Length = 445

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/365 (17%), Positives = 111/365 (30%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEACGYQPGFVIGGVPGNFDVSARLGESHFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I     
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIFPEH 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +   A          +S  +        +  K  ++ S  EV     K+ EV    
Sbjct: 211 DINLKQTIA-------MGCWSEQELVGEQGHWQAKKLNADASVWEVWLDGEKAGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMNNGLMAIAAARHVGVMPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A ++ L      G  R +AVL    +  +MG         L           V
Sbjct: 320 HHPTAILATLAALRS-KVGGTARILAVLEPRSNTMKMGLCKDDLAPSLGR------ADEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 373 FLLQPQHIPWQVAEVADACVQPAHWSGDVDALADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 462 NLLLE 466
             LL+
Sbjct: 431 QKLLD 435


>gi|74310710|ref|YP_309129.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella sonnei Ss046]
 gi|109892739|sp|Q3Z5R8|MURC_SHISS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|73854187|gb|AAZ86894.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Shigella sonnei Ss046]
 gi|323165974|gb|EFZ51754.1| UDP-N-acetylmuramate--alanine ligase [Shigella sonnei 53G]
          Length = 491

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 126/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L+  D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLIGNDLILVQG 464


>gi|283957175|ref|ZP_06374639.1| hypothetical protein C1336_000800047 [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791351|gb|EFC30156.1| hypothetical protein C1336_000800047 [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 313

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    +       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLVHEGSVLSVEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|257784291|ref|YP_003179508.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472798|gb|ACV50917.1| UDP-N-acetylmuramate/alanine ligase [Atopobium parvulum DSM 20469]
          Length = 489

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 110/351 (31%), Gaps = 30/351 (8%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  M+   L  +    + +                  +  + + E  
Sbjct: 131 KTIAVAGTHGKTTTSSMIATMLDKLGADPSFLIGGVVEG---YDTNGKNGNGQYFVCEAD 187

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P + VIT I   HL ++  +E I +   E    L+K  T+ +N D
Sbjct: 188 ES-----DGSFMFLNPSVVVITNIEADHLDHYGSLENIENTFCEFMSLLDKEETVVINGD 242

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +  +  L         + + ++G   + DF  ++ ++ +               +     
Sbjct: 243 NPHYVELAQ----STGRHVVTYGFDPSCDFVCKQEERKAGIENPLTIKTPSGQTISVVLP 298

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+      +++         +A +     +G  +R+    +    T++D+  + 
Sbjct: 299 ANPGKHNVANATAAIAVADTLNFDLEEAAAALSQFKGARRRFTHVGDINGITVVDDYGHH 358

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW--- 405
                       +  +    G +  V+         +Q             ++  V    
Sbjct: 359 ------PTEIAATMSAALPLGFKRVVVVFQPHRYSRTQDLADSFTHAFDGIDVLRVMDVF 412

Query: 406 ---------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    +SG  V +   A      V Y  +   L   +  ++  GD++
Sbjct: 413 SAGELPIPGVSGKTVSSRVQAANSVPDVRYIPSRRDLIADLLETVHPGDLL 463


>gi|218135120|ref|ZP_03463924.1| hypothetical protein BACPEC_03025 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990505|gb|EEC56516.1| hypothetical protein BACPEC_03025 [Bacteroides pectinophilus ATCC
           43243]
          Length = 458

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 110/351 (31%), Gaps = 39/351 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM-PVDV 160
                +  II ITG+ GK+TT  +L   L S  K          +IG+P+        D 
Sbjct: 103 FFECFRDRIIGITGTKGKSTTTTLLYHVLKSSGKDV----LLAGNIGIPVFEIADGMNDT 158

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              + EL    L  +        PH+A+   +   HL ++  + +  +AK  I+   +  
Sbjct: 159 TTAVLELSCHQLEYMDVS-----PHMAIYLNLHEEHLDHYGTMAKYTAAKENIYRHQKAG 213

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
             ++        + L+           +  G    AD+ L       +      + + + 
Sbjct: 214 DKLY------CLDSLRPHETLPADVYTFRCGACSGADYSLSGGTIYYKD-EDNGECEYRI 266

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  IG H   ++              +   +AL  + P   R    +         
Sbjct: 267 PVGDIKLIGEHNYFDIAFVYAACRDCGVTDEQFTRALLSYEPLPHRL---QYVGTINGIK 323

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             D+S +    +   A++ L       +     ++G M          + +L + L+  +
Sbjct: 324 WYDDSISTIDETTIQALNTL-------KDADTVLIGGM-----DRGISYKELEQYLAHSD 371

Query: 401 ISHVWLSG-------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           I ++ L           +  +K        +HY + ++            G
Sbjct: 372 IKNIILMEASGKRILEEIELMKGEFESPERIHYVQHLEDAVSLAADITGAG 422


>gi|56752431|ref|YP_173132.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           elongatus PCC 6301]
 gi|81300476|ref|YP_400684.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           elongatus PCC 7942]
 gi|62900667|sp|Q5MZA8|MURD_SYNP6 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063270|sp|Q31MM2|MURD_SYNE7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56687390|dbj|BAD80612.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus
           elongatus PCC 6301]
 gi|81169357|gb|ABB57697.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus
           elongatus PCC 7942]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 68/392 (17%), Positives = 120/392 (30%), Gaps = 41/392 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPL 151
             L +L +A R  S    +A+TG+ GKTTT  ++         +  AC         V  
Sbjct: 94  ETLGELELAWRTLSDIPWVAVTGTNGKTTTTALIAAIFERAGLQAPACGNIGFAACEVAR 153

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +        +     S+  E           I + TT  P HL+    +E   + KA
Sbjct: 154 QQQQGEAKPLDWVIAEASSYQIEAAATLAAT---IGLWTTFTPDHLNRHYTLENYFTIKA 210

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +    ++     LN DD +    +A + +      ++  +   A    R      E+ W
Sbjct: 211 SLL---DRAQQQVLNGDDPYLRN-QANATSRWPLAFWTSTQGAEALPTSRDRGFWIEEGW 266

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +  +            +G H  QN+LM +    +   + +   +A++ F        R  
Sbjct: 267 VIDRGDRLFPVERFSMVGNHNQQNLLMAVAAARLAGIEAEAIAEAMANFPGI---AHRLE 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                    LI++S   N  +    +  +        G  I + G   + G+        
Sbjct: 324 RVATWQGIELINDSKATNYDAAWVGLQAV-------PGPTILIAGGEAKQGDDQAWL--- 373

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDV-- 446
               L       V L G         L     S  V  +ET+D             D   
Sbjct: 374 ---DLIQAKARAVLLIGSAAPLFARRLAEVGYSSPVENAETLDRAVPRAVELAQSLDASH 430

Query: 447 VVV---KSS---------NSCGFYRLINLLLE 466
           V++    +S             F R    + +
Sbjct: 431 VLLSPACASFDQYPNFEARGDHFRRCAQAIAK 462


>gi|323496076|ref|ZP_08101136.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
 gi|323318820|gb|EGA71771.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio sinaloensis DSM 21326]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 105/362 (29%), Gaps = 23/362 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WILEDCGYQPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPKH 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           ++    +  +         +S  +      + +  K  ++ S  +V  Q K   V     
Sbjct: 223 EAAISDVLERGC-------WSETEFSGEQSEWQAEKLSADGSQFKVYFQAK--AVGVVNW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R          T+ D+  + 
Sbjct: 274 DLVGDHNVNNALMAIAAARHVGVTPDLACDSLAKFISTKRRLELKGEVHGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +      +  G+   +         + +  H +            V+L  
Sbjct: 334 -----PTAIELTLDGLRNKVGQNRILAVLEPRSATMKRGVHKETLAASLDAAD-AVFLYQ 387

Query: 409 FHV-LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                   + +        + S  +D L   I      GD ++V  SN  GF  +   LL
Sbjct: 388 PDAIDWSVEEVAHQCRQPAYSSSQIDELVSMIIDQAKPGDQILV-MSNG-GFEGIHGKLL 445

Query: 466 EE 467
           ++
Sbjct: 446 DK 447


>gi|171911129|ref|ZP_02926599.1| UDP-N-acetylmuramate--L-alanine ligase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 120/370 (32%), Gaps = 37/370 (10%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFELGMS 170
           ++G+ GKTTT  +LT  L    +            GVP          + ++ + E    
Sbjct: 112 VSGTHGKTTTTSILTWLLEHAGRNP-----GYLIGGVPDNFDVGARYTESEYFVIEGDEY 166

Query: 171 HLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                   +  +   P   ++  I   H   F+ +++I    + +   + + G +FLN D
Sbjct: 167 DTAFFDKRSKFLHYLPEAVIVNNIEFDHADIFNTLDDILLTFSRLLRVVPRNGKVFLNGD 226

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +     L     A  +    + G  ++ + +LR      E +      +   +      +
Sbjct: 227 EGNCRKLLEACPAPAV----TVGTGEDCEVRLRVTSAAPEHT----DFELNGVAFRLPMV 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G   A+N  M + +             AL  F   + R    +    Q     I + +  
Sbjct: 279 GEFNARNAAMAICVARFAGLTDHEIRAALLEFRGVKRR----QTERGQVHGITIIDDFGH 334

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P ++      L  +       R+  L +         +   +L + L   + S +    
Sbjct: 335 HPTAI---RETLRGLRQKYPHSRLWALFEPRSNTSRRNTLQGELIDALKEADGSIIAAVN 391

Query: 409 FHVLALKDAL-----------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
                    L                 ++   +D +   ++    +GDVV+V  SN  GF
Sbjct: 392 MPEKVPAGQLLDVDAVAAAVSASGRPSYHERNVDAIIERLKPLAKEGDVVIVF-SNG-GF 449

Query: 458 YRLINLLLEE 467
             +   L++ 
Sbjct: 450 EGIHGKLMDR 459


>gi|33151877|ref|NP_873230.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
 gi|33148098|gb|AAP95619.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Haemophilus ducreyi 35000HP]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 134/415 (32%), Gaps = 42/415 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   +   S P +  D +L                 ++A+ G+
Sbjct: 70  IGNAISRGIPC--VEYVLEHQLHYTSGPQWLHDHLLK-------------DRWVLAVAGT 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  ML   L         +            ++       F + E     S   +
Sbjct: 115 HGKTSTTGMLAWILDQNGIDTGFLIGGVAGN---FGISARIGSTKFFVIEADEYDSAFFD 171

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P   VI  +   H   F+ +  I      +   + ++G I  +  D   + 
Sbjct: 172 KRSKFVHYSPRTLVINNLEFDHADIFADLAAIQRQFHNLVRTIPQSGCILSSITDQNTQA 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMA 293
           +            YS  +    D         ++ S +       K+ +V  + IG H  
Sbjct: 232 VLK-------MGNYSELQFSGQDQTWFAQPLVADCSAFEVHYQGNKAGQVQWNVIGAHNM 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N LM +         +  A +AL+ F   + R +             + + +  +P ++
Sbjct: 285 HNALMAIAAAHHSGVSITGACQALASFVNVQRRLE----VKGVVNNITVYDDFAHHPTAI 340

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF---H 410
            A I  L   +  G+ R +AVL       ++    H +LA  L       V++       
Sbjct: 341 TATIDALR--AKVGQQRILAVLEPRSNTMKMGVHKH-ELATSLQDA--DSVFIYQPPTIE 395

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               +     +     ++ +D L + I       D +++  SN   F  +   LL
Sbjct: 396 WQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILI-MSNG-AFGGIHQKLL 448


>gi|15805654|ref|NP_294350.1| UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
 gi|25008807|sp|Q9RWN9|MURC_DEIRA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|6458326|gb|AAF10205.1|AE001920_8 UDP-N-acetylmuramate--alanine ligase [Deinococcus radiodurans R1]
          Length = 482

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 114/350 (32%), Gaps = 30/350 (8%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              + + G+ GKTTT  M+ +A+           S      VP             + E+
Sbjct: 133 GPSVGVIGTHGKTTTTSMIAVAMYGAGLD----PSAFVGGNVPEFGGNARTGTGPFVAEV 188

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G             A    +     + +S +EE     A     + ++G +    
Sbjct: 189 DESDRGFALLGCETAVFTNAEDDHVGGELATYWSTVEE---QHAGFARFVAQSGRVLFCA 245

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHH 286
           D    + L       G +   ++G+S  AD++    +     +  +V+ +G+   E    
Sbjct: 246 DWPGLDTL-----CSGAREQLTYGQSAGADYRAVNVRPDESGTTFDVEFRGERLGEARVS 300

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFF 339
             G H   N L  L +  +   D D A +AL+ FH    R +                  
Sbjct: 301 LPGTHNVLNGLAALAVTHLYGGDFDRAARALADFHGPGRRWEIKGERGGALVVDDYAHNA 360

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T +  +  A   + +    V          +    L D   + +  +   +D+A   S  
Sbjct: 361 TKVASAVQAARQTGRRVRVVFQPHRYLRTQQSWPRLAD--ALMDADEVLVLDIAA-ASET 417

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            I      G H   + D + +  H  VHY      +   ++ S   GD++
Sbjct: 418 PIE-----GVHATLITDRMTQGGHPNVHYCPDRAAVVRDLRESAQPGDII 462


>gi|162420115|ref|YP_001608263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
 gi|162352930|gb|ABX86878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Angola]
          Length = 460

 Score = 47.9 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMLA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  I+ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVLLDNNVVGEVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A            R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINASRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|82542695|ref|YP_406642.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii Sb227]
 gi|187730669|ref|YP_001878901.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella boydii CDC
           3083-94]
 gi|109892737|sp|Q326E4|MURC_SHIBS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620431|sp|B2U296|MURC_SHIB3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81244106|gb|ABB64814.1| UDP-N-acetyl-muramate:alanine ligase [Shigella boydii Sb227]
 gi|187427661|gb|ACD06935.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii CDC 3083-94]
 gi|320183622|gb|EFW58465.1| UDP-N-acetylmuramate--alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098948|gb|EGJ03899.1| UDP-N-acetylmuramate--alanine ligase [Shigella boydii 3594-74]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVF---------------HPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|312136106|ref|YP_004003444.1| udp-n-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
 gi|311776157|gb|ADQ05644.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           owensensis OL]
          Length = 455

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 119/363 (32%), Gaps = 30/363 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI+G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMKDFKN-----VIAISGTHGKTTTTSMIGYILKKANYN---PTVLVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKEYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G +  N DD   + + ++ +   I           AD           +  +
Sbjct: 199 FAQKIPASGFLIANCDDKNVKDIISELNTQIICISTKEKTDIFADNISCSDGYY--EFDV 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +  +  G+H   N L    + S L  +  T   A++ F     R +    
Sbjct: 257 KNNNDKILAHIKLNIPGFHNVYNALAAFAVASKLGVESITIEHAIAEFCGASRRLE---- 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHID 391
              +     + + Y  +P  +KA+++ L ++S   +G+  A+         +   +   +
Sbjct: 313 KAGEFDGICLYDDYAHHPTEIKASLNTLKKLS---QGKVFAIFQPHTFSRLKNLLNEFAE 369

Query: 392 LAEVLSLYNISHVWL------SGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDG 444
              +     I+ V+        G     L   L    +   Y  + + +  ++      G
Sbjct: 370 SLSLADKVIITDVYAAREKNNFGITSENLCLKLKEIGVDCEYISSFEDIACYVVKEAKKG 429

Query: 445 DVV 447
           D++
Sbjct: 430 DII 432


>gi|70732383|ref|YP_262139.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas fluorescens
           Pf-5]
 gi|109892722|sp|Q4K6J4|MURC_PSEF5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|68346682|gb|AAY94288.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 484

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 139/413 (33%), Gaps = 43/413 (10%)

Query: 53  GHDFILHAVQKGA----GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH    +A           V  +   VA+     IPV         +  LA   R R   
Sbjct: 67  GHR-AENAANADVLVVSSAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG- 118

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  +L    ++       +     +               + I E  
Sbjct: 119 --VAVAGTHGKTTTTSLLASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEAD 173

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNY 227
            S    +      ++P +AV+T I   H++ +     ++     +    L   G   +  
Sbjct: 174 ESDASFLH-----LQPLVAVVTNIDADHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCL 228

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD     +  +     +    ++G S+ AD +    +Q   Q++  V  + +    V   
Sbjct: 229 DDPVVREILPQVKRPTV----TYGFSEEADVRAINVRQQGMQTFFTVLRRDREPLDVSVN 284

Query: 288 IGYHMAQNMLMT-LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
           +  +      +  + I +      +  ++ LS F     R + Y     +G   ++ + Y
Sbjct: 285 MPGNHNVLNSLATICIATDEGISDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---H 403
             +P  + A I  +    P        V+         ++  + D  +VL+  N+     
Sbjct: 345 GHHPTEVAAVIKAVRGGWPER----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLME 400

Query: 404 VWLSGF------HVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           V+ +G           L  ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 401 VYPAGEEPIPGADSRQLCHSIRQRGQLDPIYIERGVDLAPLVKPLLRAGDILL 453


>gi|86150166|ref|ZP_01068393.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88597540|ref|ZP_01100774.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|218562465|ref|YP_002344244.1| hypothetical protein Cj0837c [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839282|gb|EAQ56544.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|88190132|gb|EAQ94107.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360171|emb|CAL34965.1| conserved hypothetical protein Cj0837c [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|284926082|gb|ADC28434.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315928496|gb|EFV07802.1| hypothetical protein CSS_2272 [Campylobacter jejuni subsp. jejuni
           305]
          Length = 313

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFF-----NND-KKEIAQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKEIFYFRVENLERALVRFLRFF 90


>gi|225351421|ref|ZP_03742444.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157765|gb|EEG71048.1| hypothetical protein BIFPSEUDO_03016 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 480

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 117/374 (31%), Gaps = 38/374 (10%)

Query: 97  KLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+   +T      I ITG+ GKT+T EM +  L++   T   +     +IG  +
Sbjct: 88  ELAWQLRVNCDSTGELAQWIGITGTNGKTSTTEMTSEMLTACDLTAPAV----GNIGKAV 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L     L        A IT IA  HL    GIE  A+ KA
Sbjct: 144 SHAVVDPANDVLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGIENYAADKA 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F  ++K      N DD     L   +          F  S+  D Q+           
Sbjct: 200 KVFHRVKKAL--VYNADDERVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMS 257

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +    E V     +        T+    +  A    A+        ++      +
Sbjct: 258 GIAGGELGMPEQVAKVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLEQ 317

Query: 332 CALNQGFFTLIDESYNANPASMKAA--------ISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +  +   +  S++           +  + ++   +   + + G + + G 
Sbjct: 318 FTPGGHRIQTVATATTPDGGSIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAK-GS 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSET---MDGLF 434
             +    +       + I    + G     + DA   S        +  +     M+   
Sbjct: 377 RFEQLVAE-----QSHTIKAAVVIGKDQQPILDAFAASAPDIPLTIIDPANNDVIMERAV 431

Query: 435 LFIQSSLVDGDVVV 448
                    GDVV+
Sbjct: 432 DAAGEYAQSGDVVL 445


>gi|113461392|ref|YP_719461.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
 gi|112823435|gb|ABI25524.1| UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl-medo-
           diaminopimelate [Haemophilus somnus 129PT]
          Length = 458

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 88/314 (28%), Gaps = 21/314 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E                   P   +I  +   H   F  ++ I      +   
Sbjct: 154 KSPFFVIEADEYDTAFFDKRSKFVHYNPKTLIINNLGFDHADIFDNLQAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + K+G I     +   +              +S       D +    +   + S   V  
Sbjct: 214 MPKSGRILAFAHEQSVKETLD-------MGCWSEMHFLGQDQEWHTERIAHDSSHFAVYH 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QGK    V          NM   L  ++           A    +      +R       
Sbjct: 267 QGKKAGEV--QWNIVGQHNMNNALMAIAAAYHVGVQVKDACQALYSFVNAKRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +      +   ++ +     G G RI  + +             ++A  L
Sbjct: 325 NGVTVYDDFAHH---PAEILATLTALRDKVGGGARILAVLEPRSNTMKMGIHKDEIAPAL 381

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +     +V+L     +   + +     +    +S  +D L   I +     D ++V  SN
Sbjct: 382 ARA--DYVFLLQPENIPWNVVEIANDCVQPAKWSGNLDNLVDLIVTEAQPEDHILV-MSN 438

Query: 454 SCGFYRLINLLLEE 467
              F  +   LLE+
Sbjct: 439 GS-FGGIHQKLLEK 451


>gi|134294648|ref|YP_001118383.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
 gi|166222968|sp|A4JB95|MURC_BURVG RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|134137805|gb|ABO53548.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia vietnamiensis
           G4]
          Length = 465

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 87/411 (21%), Positives = 141/411 (34%), Gaps = 40/411 (9%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD     ++ GA  VVV+T + +     L+     V  V  A+  LA   RL+     I
Sbjct: 56  GHDAAN--IE-GANAVVVSTAVRSDNPEVLAARHQRVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +        ++   S      A+    +  +     +  ++     + VV +  G 
Sbjct: 221 NVRQIIPFISKPVVRYGLSADAQVRAENIDARDGRMH---FTVIREGRSPLAVVLNLPGL 277

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNAN 349
           H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  +
Sbjct: 278 HNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGHH 337

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG- 408
           P  M A I+      P        VL         ++    D   VLS   +  + L+  
Sbjct: 338 PVEMAATIAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTEV 391

Query: 409 ----------FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
                      +  AL  AL     V   +  T+D +   +     +GDVV
Sbjct: 392 YAAGEAAIATANGDALSRALRTVGKVDPVFVATVDDVPDALAKVARNGDVV 442


>gi|51594809|ref|YP_069000.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopime late ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|170025980|ref|YP_001722485.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186893818|ref|YP_001870930.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
 gi|51588091|emb|CAH19697.1| UDP-N-acetylmuramate:L-Ala-D-Glu-meso-diaminopimelate ligase
           [Yersinia pseudotuberculosis IP 32953]
 gi|169752514|gb|ACA70032.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis YPIII]
 gi|186696844|gb|ACC87473.1| UDP-N-acetylmuramate [Yersinia pseudotuberculosis PB1/+]
          Length = 461

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMLA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  I+ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVLLDNNVVGEVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A            R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINASRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|186680972|ref|YP_001864168.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc punctiforme PCC
           73102]
 gi|229620055|sp|B2J717|MURC_NOSP7 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|186463424|gb|ACC79225.1| UDP-N-acetylmuramate--alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 481

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 122/421 (28%), Gaps = 58/421 (13%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +        +   L  PV    DVL AL  +A           IA+ G+ GKTT
Sbjct: 91  VICSTAINTNNLEYKAALELGCPVLHRSDVLAAL--IADYY-------SIAVAGTHGKTT 141

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L                               + + E   S           
Sbjct: 142 TSSMIGYMLLEAGLD---PTILVGGEVNAWEGNARLGQSQYLVAEADES-----DGSLVK 193

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT I   H  ++  +EE+        +G +                       
Sbjct: 194 HAPEIGIITNIELDHPDHYDTLEEVIDIFQTFAKGCKTLIGSIDCATV---------RDR 244

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L     YS     +AD+ +      ++ +     +       +    +  H   N L  +
Sbjct: 245 LQPTISYSLHSDTDADYTVTNIDYRADGTTALVWERGKALGVLKLRLLSRHNLSNALAAV 304

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  +     K ++ F     R             T ID+   A+  S        
Sbjct: 305 AVGRALGLEFGAIAKGIATFEGARRRF---ELRGEVDGITFIDDY--AHHPSEIRVTLAA 359

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-------- 412
           +++      R +A+          + +F  + AE     +   V L+  +          
Sbjct: 360 ARLQARPGQRVVAIFQPHRY--SRTLTFLEEFAESF--THADLVVLTDIYSAGEPNLGQI 415

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEE 467
                  +   +   V Y  T+  +  ++  +L  GD+ +       G   ++I  ++  
Sbjct: 416 TGEQLAAEIAKQHSQVVYQPTLPSVCEYLLQTLRPGDLALF---LGAGNLNQVIPEVITA 472

Query: 468 F 468
           F
Sbjct: 473 F 473


>gi|167614206|gb|ABZ89709.1| UDP-N-acetylmuramate--L-alanine ligase [Buchnera aphidicola]
          Length = 476

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/402 (11%), Positives = 117/402 (29%), Gaps = 39/402 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++     +      +IP+         L    +   ++ K   IAI+G+ GKTTT  +
Sbjct: 85  SAILSTNPEIIYAKKNNIPIL--------LRAEMLEILMQFKYG-IAISGTHGKTTTTSI 135

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +             I                     + I E   S           + P 
Sbjct: 136 IADIFIESGLDPTIINGGIIKSINSHAKLGY---SRYFIVEADES-----DASFLYLNPK 187

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +IT I   H+ ++         K      L+K             + +      +  K
Sbjct: 188 IGIITNIEDDHMDHYDN--NFIKLKQAFLTFLKKIPLNGTAIVCIDNDAICDILPYIKCK 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            +                +         +      + +  +  G H A N    + +   
Sbjct: 246 ILTYGFNKNADFHIYSYKQDGFIGYLQIIIKHQIKLNITLNIPGKHNALNATAAVVLAIH 305

Query: 306 LTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                   I +L  F     R         +  + +   T++ + Y  +P  +   I+ +
Sbjct: 306 EKIKHYNIIASLKNFQGTCRRFEFLGKYSIKKNIIKRQPTMLIDDYGHHPTELSETINTI 365

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---------WLSGFHV 411
               P+       ++         + + + D  ++LS  ++  +         ++ G   
Sbjct: 366 RTGWPNNN----LIMIFQPHRYTRTHNLYHDFVKILSKVDVLLILNVYSANEKYILGADS 421

Query: 412 LALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +L + + +    ++++    + +   +   L   D+++++ 
Sbjct: 422 FSLYNDIKKCKKKYIYFIPDHNLILDTLIPRLNGNDIILIQG 463


>gi|209696054|ref|YP_002263984.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aliivibrio
           salmonicida LFI1238]
 gi|226711878|sp|B6ELH7|MURD_ALISL RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|208010007|emb|CAQ80330.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aliivibrio
           salmonicida LFI1238]
          Length = 442

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 61/342 (17%), Positives = 124/342 (36%), Gaps = 38/342 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
           A +IAITGS GK+T  ++     ++         +   +IG       +  D D  + EL
Sbjct: 108 APVIAITGSNGKSTVTDLTGEMANAAGV----KTAVGGNIGFAALDL-LEQDADLYVLEL 162

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L      T  ++   A    ++  H+  + G+E+   AK  +F+  +         
Sbjct: 163 SSFQL----ETTSSLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRVFDHADVCIVN---- 214

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                   K        KT+ SFG   + ++      + + + ++               
Sbjct: 215 -----RDDKETYPDTADKTLISFGFDTSDEY---GCIEENGRLFLAKNNTPIIAANELGL 266

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L+ L ++     + +  +  L  ++    R    +          +++S  
Sbjct: 267 VGKHNIANSLVALALLDAAGVNTNKTLDTLKRYNGLTHRC---QVVAEMNGVRWVNDSKA 323

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N AS  AA+S L       EG+   ++G + +  + S     +L+  L+  ++  ++  
Sbjct: 324 TNVASTLAALSGL-----SIEGKLHLLVGGVGKGADFS-----ELSPALNELDL-MMYCF 372

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           G         +P        +TMD     +   L  GD+V++
Sbjct: 373 GEDG---VQFMPLDPRSRLCQTMDEAIELLSPELTFGDMVML 411


>gi|205351468|ref|YP_002225269.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226706330|sp|B5RH65|MURC_SALG2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|205271249|emb|CAR36037.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626495|gb|EGE32838.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 125/401 (31%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++     + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-----------LSGFHVL 412
            P        V+         ++  + D A VL+   +  +              G    
Sbjct: 370 WPDKN----LVMLFQPHRYTRTRDLYDDFANVLTQ--VDALLMLDVYPAGEAPTPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     +          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|167550676|ref|ZP_02344433.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168464319|ref|ZP_02698222.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195632677|gb|EDX51131.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|205324415|gb|EDZ12254.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM----------- 298
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 299 ---TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|22124579|ref|NP_668002.1| ligase [Yersinia pestis KIM 10]
 gi|45440418|ref|NP_991957.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806067|ref|YP_649983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|108813423|ref|YP_649190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|145600815|ref|YP_001164891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|153997296|ref|ZP_02022396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165928167|ref|ZP_02223999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165937458|ref|ZP_02226021.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|166011290|ref|ZP_02232188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213978|ref|ZP_02240013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167401240|ref|ZP_02306740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420474|ref|ZP_02312227.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423266|ref|ZP_02315019.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218930533|ref|YP_002348408.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|229839173|ref|ZP_04459332.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229896662|ref|ZP_04511829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|229899737|ref|ZP_04514878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903899|ref|ZP_04519012.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|270489112|ref|ZP_06206186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294505353|ref|YP_003569415.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|21957381|gb|AAM84253.1|AE013669_3 putative ligase [Yersinia pestis KIM 10]
 gi|45435275|gb|AAS60834.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777071|gb|ABG19590.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Nepal516]
 gi|108777980|gb|ABG12038.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Antiqua]
 gi|115349144|emb|CAL22107.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m e
           so-diaminopimelate ligase [Yersinia pestis CO92]
 gi|145212511|gb|ABP41918.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis Pestoides
           F]
 gi|149288933|gb|EDM39013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis CA88-4125]
 gi|165914563|gb|EDR33177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. IP275]
 gi|165919854|gb|EDR37155.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165989674|gb|EDR41975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204773|gb|EDR49253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961280|gb|EDR57301.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049265|gb|EDR60673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057436|gb|EDR67182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679669|gb|EEO75772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Nepal516]
 gi|229687229|gb|EEO79304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229695539|gb|EEO85586.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700440|gb|EEO88472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis Pestoides A]
 gi|262363418|gb|ACY60139.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D106004]
 gi|262367207|gb|ACY63764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis D182038]
 gi|270337616|gb|EFA48393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pestis KIM D27]
 gi|294355812|gb|ADE66153.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- me
           so-diaminopimelate ligase [Yersinia pestis Z176003]
 gi|320013724|gb|ADV97295.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 460

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMLA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  I+ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVLLDNNVVGEVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A            R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINASRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|72382768|ref|YP_292123.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL2A]
 gi|122063254|sp|Q46JA8|MURD_PROMT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72002618|gb|AAZ58420.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL2A]
          Length = 469

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/396 (14%), Positives = 122/396 (30%), Gaps = 51/396 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTL 153
            ++A+A    +    + ITG+ GKTT   ML   L          G+    +       +
Sbjct: 106 GEVALAWERLTHIPSVGITGTNGKTTVTNMLNHILKLNNLNTDMGGNVGKALSKIALENM 165

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                ++D+ + EL    +      +  V P I + TT  P HL   + +E     K  +
Sbjct: 166 KNNDQELDWLVLELSSFQI----EGSPKVAPTIGIWTTFTPDHLERHNDMESYFKIKRSL 221

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            E          +   S       K   +G      + + +      + +    ++    
Sbjct: 222 LEKSSIRIYNSDDQYLSSKRKELPKGIWVGTNQQSLYSQYQKFWIDQKGYIFEDKKQL-- 279

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                     + +  G H  QN+L+ +     +  D  +  K++  F     R       
Sbjct: 280 ------FHSSILNIPGKHNLQNLLLAIAAAREIGLDDSSIAKSIKSFKSIPHR---LEYL 330

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            N    +  ++S   N  S   A+  +           I + G + + G+          
Sbjct: 331 GNVNNLSFYNDSKATNFDSSITALKSVPH-------PIILLAGGIQKKGDFMPWVKQ--- 380

Query: 394 EVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVD-GDV-VV 448
                 + + + L G     LK+ L        +   + ++   +   +   +     ++
Sbjct: 381 ---IKQSTNGIVLFGLSANNLKEELLISSYIGEIIVKKNLEEATIASINIARETNSRSIL 437

Query: 449 V---KSS---------NSCGFYRLINLLLEEFPAIQ 472
           +    +S             F  L+    +++  I+
Sbjct: 438 LSPACASFDQYKNYEERGDHFKNLV----KKYKLIK 469


>gi|148257421|ref|YP_001242006.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Bradyrhizobium sp. BTAi1]
 gi|146409594|gb|ABQ38100.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bradyrhizobium sp.
           BTAi1]
          Length = 466

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 65/451 (14%), Positives = 131/451 (29%), Gaps = 69/451 (15%)

Query: 52  DGHDFILHAVQKG--------------AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK 97
           DG + +  A + G              A LV+          +  +P + V     A  +
Sbjct: 40  DGAERLAEAAKAGFVTADLRTVSWSDFAALVLA----PGVPLTHPVPHWSVLKAREAGIE 95

Query: 98  LAVAA--------RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
           +            R    A  +AITG+ GK+TT  ++   + +             +IG 
Sbjct: 96  VIGDIELFCRERRRHAPDAPFVAITGTNGKSTTTALIAHLMQTAGYD----TQLGGNIGT 151

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +     P      + E+    +     LT  + P + ++  ++  H+     IE  A+ 
Sbjct: 152 AILSLEPPRMGRVHVIEMSSYQID----LTPSLDPTVGILLNVSEDHIDRHGTIENYAAV 207

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +  G++  GT  +  DD F   +  +    G + +    K+  AD    + +     
Sbjct: 208 KERLVAGVKPEGTAIIGVDDGFSRAIADRLDQAGKRVVRVSVKNPLADGLYVEHETILRS 267

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +        +   +      ++           ++I            S           
Sbjct: 268 ASGARSEVARLGGIGSLRGQHNAQNAACAAAATLAIGVKQDVLQQGLRSFPGLVHR---- 323

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +G    +++S   N  +   A+S  + I     G+  A  G +  +        
Sbjct: 324 MEQVGRRGHVLFVNDSKGTNADATAHALSSFADIFWIAGGKPKA--GGITSLEGFFPR-- 379

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGD 445
                      I   +L G         L   +    S T++       +          
Sbjct: 380 -----------IRKAYLIGEAAAEFAGTLGNKVPHAMSGTLEVAVAQAAADAEASGLTDA 428

Query: 446 VVVV---KSS---------NSCGFYRLINLL 464
           VV++    +S             F  L+  L
Sbjct: 429 VVLLSPACASFDQFRNFEIRGARFRDLVQAL 459


>gi|283954408|ref|ZP_06371928.1| hypothetical protein C414_000220025 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794025|gb|EFC32774.1| hypothetical protein C414_000220025 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 313

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  A++KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NND-KKEITQAIEKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +++  +D+  ++    I  F V+++  AL +     
Sbjct: 57  VIITESDI--AVEDKEIFYFKVENLEQALIRFLRFF 90


>gi|168262186|ref|ZP_02684159.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205348903|gb|EDZ35534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM----------- 298
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPNLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 299 ---TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|121535903|ref|ZP_01667700.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Thermosinus carboxydivorans Nor1]
 gi|121305522|gb|EAX46467.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Thermosinus carboxydivorans Nor1]
          Length = 370

 Score = 47.5 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 15/94 (15%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  +L + +QG  +G      V G+ SID     P +  FA+          +  A    
Sbjct: 31  TLAELAKLLQGEVLGDGA-VTVTGVTSID--DAGPSDITFAVPPH-------LEKAANCR 80

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
           A  VV+     A++     P   VD+   A  +L
Sbjct: 81  AAAVVI----PATVDRFPKPAIRVDNPRAAFAQL 110


>gi|315124354|ref|YP_004066358.1| hypothetical protein ICDCCJ07001_806 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315018076|gb|ADT66169.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 286

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|254414291|ref|ZP_05028058.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178966|gb|EDX73963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 465

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 118/370 (31%), Gaps = 48/370 (12%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGS-------------Y 143
           +LA      S    + ITG+ GKTTT  ++     +        G+              
Sbjct: 97  ELAWRYLKSS--PWVGITGTNGKTTTTALIAAIFQAAGFHAPACGNIGYAACELALAQPD 154

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
               G  L        +D+ I E+    +   R L     P I V TT  P HL+    +
Sbjct: 155 KTRHGASLHEKLPQSKIDWVIAEVSSYQIESSRELA----PTIGVWTTFTPDHLNRHKTL 210

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           E   + KA++     ++     N DD +   L     +        +  S        + 
Sbjct: 211 ENYYTIKADLL---SRSHDQIFNGDDPYLRQLGTTHWSKA------YWTSVKGRDATPRP 261

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
               E  W+ V+ +          +G H  QN+LM +    +   +    ++A++ F   
Sbjct: 262 WVYIENGWVMVESEPIVPVDSLRMVGNHNQQNLLMAVAAARLAGIEKQAIVEAITNFPGV 321

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                R    +       I++S   N  + +  ++ +       +   I + G   + G+
Sbjct: 322 ---PHRLEHIITWQGIDFINDSKATNYDAAQVGLAAV-------DSPVILIAGGEAKAGD 371

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSL 441
            +Q  +            + V L G    A    L    +  Y   ETM           
Sbjct: 372 DTQWLN------AIQAKAAAVLLIGEAASAFAQRLQEVGYFRYEIVETMARAVPRAAELA 425

Query: 442 VDGD--VVVV 449
              +  VV++
Sbjct: 426 QQDNAPVVLL 435


>gi|294784925|ref|ZP_06750213.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
 gi|294486639|gb|EFG34001.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fusobacterium
           sp. 3_1_27]
          Length = 432

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 117/352 (33%), Gaps = 47/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF   
Sbjct: 90  KTKIIAITGTNGKSTTTAKISDMLNYAGY----KAAYAGNIGRSLSEVLLKEKDLDFISL 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  ++  +E    K  I +   +      
Sbjct: 146 ELSSFQLENIE----NFKPYISMIINMGPDHIERYNSFDEYYDTKFNITKNQTEDLYFIE 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E    +  A  I    S  K K AD  ++  K C  ++ +    +        
Sbjct: 202 NIDDVEIEKRAKQIKAKRI----SVSKFKKADIFVKNDKICYGENSIIDVDKLS------ 251

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+  TL +V+          K             R     N G    I++S
Sbjct: 252 ----LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKVKFINDS 307

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI           G    V                 LAE++   NI  V+
Sbjct: 308 KATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEVY 353

Query: 406 LSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++  L +           V+   ++  +           +V+++
Sbjct: 354 LIGVIADKIEKELKKIGYEDNKIHKLVNLENSLQDMKKRFTKE--SNEVILL 403


>gi|325269658|ref|ZP_08136271.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
 gi|324988026|gb|EGC19996.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella multiformis DSM
           16608]
          Length = 458

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 106/367 (28%), Gaps = 39/367 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    DF + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKN--YGTNYILSAHSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++K G + ++    
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALIIHKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  K H      +Y + +                 ++  +       +V       
Sbjct: 228 M------KQHVQEGVKVYEYSRDGGDFHAGNVRIADGTITFDFLSPIENVRDVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +  +   + R           F +          
Sbjct: 282 INIENGIAAMAMAQLNGCTAEELRNGMKTYGGVDRRFDFKIKDSRHVFLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   + +        +          +   ++ F+ D AE L   +   V L+   
Sbjct: 342 QSAKSLKELYADRKVTVIFQPH--------LYSRTRDFYKDFAEAL--SHFDEVILTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
                   G     + D L   I        + +  F++S   D DV+VV    +     
Sbjct: 392 PAREQPIPGVTSRLIYDNLRPDIEKQMIR-KEDVLDFVRS--RDFDVLVVLG--AGNLDN 446

Query: 460 LINLLLE 466
            +  + E
Sbjct: 447 YVPRITE 453


>gi|212696049|ref|ZP_03304177.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676958|gb|EEB36565.1| hypothetical protein ANHYDRO_00585 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 371

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 109/361 (30%), Gaps = 47/361 (13%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-----IGVPLTLARMPVDVDFGI 164
           +I +TG+ GKTTT  ++   L+ +    A IG+         +    T   +    +  I
Sbjct: 1   MIGVTGTNGKTTTANLIAFVLNKLGSPCANIGTDGADLINKTMPTEHTTPEITDLNEILI 60

Query: 165 FE---------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                      +  S  G      + +     V T ++  H+     ++    AK  +  
Sbjct: 61  EAKKENIKNAVMETSSHGLYLKRNYGIDYEYGVFTNLSMEHMDFHKTMDNYFKAKMILLN 120

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             +K      +      + +   +  + I     +              +  ++  + ++
Sbjct: 121 NSKKQVVNLDDDYGKRAKEIFKDALTISINEDSKY------------RAKNIKRVDLGLE 168

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                ++   +  G++   N L  + I + L   ++   KAL  F   + R +     L 
Sbjct: 169 FTVNGVKFHLNRFGHYDIYNSLCAIAIANDLGYKLEEISKALENFIGVKSRFEFIENKLG 228

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    +  A         ++   +    +    AV G     G+ +      + ++
Sbjct: 229 INIVVDFAHTPEA-------FENLFKDLPKDKK--IYAVYGI---NGDRTYDIRKAVGKI 276

Query: 396 LSLYNISHVWLSGF--------HVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDV 446
            + Y +  V  +              +K+ +  +       +       +  S    GD 
Sbjct: 277 SAKYGVFSVITTDDPKFDTFENISQQIKEGVDENKGESIIIKDRKEAIKYGISHAKKGDF 336

Query: 447 V 447
           V
Sbjct: 337 V 337


>gi|172059550|ref|YP_001807202.1| UDP-N-acetylmuramate--L-alanine ligase [Burkholderia ambifaria
           MC40-6]
 gi|229486473|sp|B1YSS5|MURC_BURA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171992067|gb|ACB62986.1| UDP-N-acetylmuramate--alanine ligase [Burkholderia ambifaria
           MC40-6]
          Length = 465

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 90/412 (21%), Positives = 144/412 (34%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD    A   GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAANIA---GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D   +AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQQALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A ++      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATVAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL     V   +  ++D +   +     +GDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDDVPDALAGVARNGDVV 442


>gi|251772200|gb|EES52770.1| UDP-N-acetylmuramate--alanine ligase [Leptospirillum
           ferrodiazotrophum]
          Length = 471

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 102/348 (29%), Gaps = 28/348 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+TGS GKTTT  M+   L S      C+               +     + + E   S
Sbjct: 110 IAVTGSHGKTTTTSMVASLLVSAGLDPTCVVGGRVSS---FPGCALVGRSRYFVTEADES 166

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      + P + ++T I   H+  +   + +  A +   +  ++ G   L  DD 
Sbjct: 167 -----DGSFMKLAPRLRIVTNIDREHMDFYGTFDNLIQAFSTYLDTGDEGGIGILCIDDP 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L  +   + +    S      A+  + +       S+              H  G 
Sbjct: 222 GVAALIERISTIPLTYGLSSAARVRAENIVHEGV---GSSFDVRVDGACWGRFSLHVPGM 278

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  +     L    D   +ALS F     R       L +    ++ + Y  +P
Sbjct: 279 HNILNALAAICAGICLEISPDLMRQALSRFESVGRRFT----LLGERDGVIVVDDYGHHP 334

Query: 351 ASM----------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
             +               +++   PH   R   +     E    +      L   +    
Sbjct: 335 TEIRATLAAARLAYPGRRIVAVFQPHRFTRVRDLQNAFIESFSDADKI---LVTEIYSAG 391

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +   G   L  K        V Y    D     +   L  GD+++
Sbjct: 392 EDPIPGIGSEGLYRKMRDRWDDRVDYEPRRDRWVERLNGMLKPGDLLL 439


>gi|237742552|ref|ZP_04573033.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
 gi|229430200|gb|EEO40412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           4_1_13]
          Length = 454

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 71/349 (20%), Positives = 118/349 (33%), Gaps = 41/349 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           K  IIAITG+ GK+TT   ++  L+      A  G+    +   L   +   D+DF   E
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNHAGYRAAYAGNIGRSLSEVLLKEK---DLDFISLE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L  I       +P+I++I  + P H+  ++  +E    K  I +   +      N
Sbjct: 169 LSSFQLENIE----NFKPYISMIINMGPDHIERYNSFDEYYDTKFNITKNQTEDLYFIEN 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD   E    +  A  I    S  K K AD  ++  K C  ++ +    +         
Sbjct: 225 IDDVEIEKRAKQIKAKRI----SVSKFKKADIFVKNDKICHGENSIIDVDKLS------- 273

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N+  TL +V+          K             R     N G    I++S 
Sbjct: 274 ---LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKVKFINDSK 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S K AI           G    V                 LAE++   NI  V+L
Sbjct: 331 ATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKK-NIKEVYL 376

Query: 407 SGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL--VDGDVVVV 449
            G     ++  L +       +H    ++     ++        +V+++
Sbjct: 377 IGVIADKIEKELKKIGYEDNKIHKLVNLENSLQDMKKRFTKESNEVILL 425


>gi|315617649|gb|EFU98255.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 3431]
          Length = 457

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 117/375 (31%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  +V    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVSPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|298252630|ref|ZP_06976424.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
 gi|297532994|gb|EFH71878.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Gardnerella
           vaginalis 5-1]
          Length = 538

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/406 (14%), Positives = 110/406 (27%), Gaps = 62/406 (15%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  I +TG+ GKT+T EM +  L++       +     +IG  ++ A +  + D 
Sbjct: 124 RTNKPAYWIGVTGTNGKTSTTEMTSAMLTACGLNAPAV----GNIGKSVSHAALECEHDA 179

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    G+E  A  K+++F        
Sbjct: 180 LCVELSSFQLHFTDSLAL----DCAAITNIAADHLDWHGGMEAYARDKSKVFNN--VQKA 233

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           +  N  D     L   +          F   +  D ++         +         +++
Sbjct: 234 LVYNAQDERVSKLADCAQVADGCKKIGFTLEEPKDGEIGVKDGWIVDNSGVAGGTKGTLK 293

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            +              ++    +  A    A+         +   +  R     G     
Sbjct: 294 PIVELRELKHLCEPDGSVYPHLLADALTALALALGLTGD-VDSSVRALREFAPGGHRIQT 352

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE------MGELSQSFHIDLAEVL 396
             +  +   +    I  +            A L            G L++  H +     
Sbjct: 353 VATLMSEDENPSHCIRFVDDSKATNAHAACASLASFANNSVVWIAGGLAKGGHFEDLIAN 412

Query: 397 SLYNISHVWLSGFHVLALKDAL-------------PRSIHVHYSETMDGL---------- 433
            L+ I  V + G     + +AL                      + +D L          
Sbjct: 413 QLHVIKAVVVIGIDQRPIVEALHSSAPHIPVTIVSQDGSCAKSYDCVDDLVCEYIENTSL 472

Query: 434 ---------------FLFIQSSLVDGDVVVV---KSSNSCGFYRLI 461
                                    GDVV++    +S      + +
Sbjct: 473 VNPDSSFGEAVMRQTVEAAGRYAKPGDVVLLAPACAS----MDQFV 514


>gi|170719003|ref|YP_001784164.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
 gi|168827132|gb|ACA32503.1| UDP-N-acetylmuramate [Haemophilus somnus 2336]
          Length = 458

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 88/314 (28%), Gaps = 21/314 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E                   P   +I  +   H   F  ++ I      +   
Sbjct: 154 KSPFFVIEADEYDTAFFDKRSKFVHYNPKTLIINNLGFDHADIFDNLQAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + K+G I     +   +              +S       D +    +   + S   V  
Sbjct: 214 MPKSGRILAFAHEQSVKETLD-------MGCWSEMHFLGQDQEWHTERIAHDSSHFAVYH 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QGK    V          NM   L  ++           A    +      +R       
Sbjct: 267 QGKKAGEV--QWNIVGQHNMNNALMAIAAAYHVGVQVKDACQALYSFVNAKRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +      +   ++ +     G G RI  + +             ++A  L
Sbjct: 325 NGVTVYDDFAHH---PAEILATLTALRDKVGGGARILAVLEPRSNTMKMGIHKDEIAPAL 381

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           +     +V+L     +   + +     +    +S  +D L   I +     D ++V  SN
Sbjct: 382 ARA--DYVFLLQPENIPWNVVEIANDCVQPAKWSGNLDNLVDLIVTEAQPEDHILV-MSN 438

Query: 454 SCGFYRLINLLLEE 467
              F  +   LLE+
Sbjct: 439 GS-FGGIHQKLLEK 451


>gi|113955473|ref|YP_731457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Synechococcus
           sp. CC9311]
 gi|113882824|gb|ABI47782.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           CC9311]
          Length = 466

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 105/351 (29%), Gaps = 35/351 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC---IGSYNNHIGVPLT 152
            ++AVA +   K   I ITG+ GKTT   +L   L+           +G     +G+   
Sbjct: 98  GEMAVAWQALCKCPWIGITGTNGKTTVTHLLHHVLNQAGLYAPMAGNVGDSAAELGLQCM 157

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D+ + E+    +         VRP I + TT+ P HL     ++     K  
Sbjct: 158 DP-AQTKPDWIVMEMSSYQI----ESAIEVRPTIGIWTTLTPDHLERHGSMDAYRDIKKG 212

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + +  E                L+++          S  ++K     L  W       ++
Sbjct: 213 LLQRSEHAVLNA------DDADLQSRHADWPDAQWISSAQNKCEPSNLELWINPEG--FV 264

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             +            +G H  QNML+          +     + L  F        R   
Sbjct: 265 CSKKGALFPANALAMLGEHNRQNMLLVTAAALQTGLEAQAIERGLRSFPGV---PHRLES 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFH 389
             +     + ++S   N  +   A+  +             + G + + G+ S   Q  H
Sbjct: 322 LGSLHGMNVFNDSKATNYDAAAVALQAV-------PSPIALLAGGLSKQGDASGWLQLLH 374

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             +   ++L+      L G     L      +  V    TM          
Sbjct: 375 DKVC-SIALFGSDRDILLG-----LIRNSGYTGDVTSHPTMADAVAAAIEQ 419


>gi|16763519|ref|NP_459134.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161612473|ref|YP_001586438.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990002|ref|ZP_02571102.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230408|ref|ZP_02655466.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168234893|ref|ZP_02659951.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243456|ref|ZP_02668388.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168820877|ref|ZP_02832877.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194450712|ref|YP_002044099.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470477|ref|ZP_03076461.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734645|ref|YP_002113147.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264975|ref|ZP_03165049.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200387518|ref|ZP_03214130.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204927332|ref|ZP_03218534.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|20532170|sp|Q8ZRU2|MURC_SALTY RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189082496|sp|A9MZM0|MURC_SALPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620430|sp|B4TXH9|MURC_SALSV RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620433|sp|B4TJ88|MURC_SALHS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16418629|gb|AAL19093.1| L-alanine adding enzyme [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161361837|gb|ABX65605.1| hypothetical protein SPAB_00163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409016|gb|ACF69235.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456841|gb|EDX45680.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710147|gb|ACF89368.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197243230|gb|EDY25850.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291894|gb|EDY31244.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199604616|gb|EDZ03161.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323997|gb|EDZ09192.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205331420|gb|EDZ18184.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335054|gb|EDZ21818.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337526|gb|EDZ24290.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205342532|gb|EDZ29296.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|261245362|emb|CBG23151.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267991807|gb|ACY86692.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156757|emb|CBW16232.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911098|dbj|BAJ35072.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084372|emb|CBY94165.1| UDP-N-acetylmuramate-alanine ligase [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222297|gb|EFX47369.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615950|gb|EFY12867.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620734|gb|EFY17594.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623914|gb|EFY20751.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627362|gb|EFY24153.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630669|gb|EFY27433.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638111|gb|EFY34812.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640597|gb|EFY37248.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647738|gb|EFY44223.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648087|gb|EFY44554.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656881|gb|EFY53167.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657409|gb|EFY53681.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663728|gb|EFY59928.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666561|gb|EFY62739.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672280|gb|EFY68392.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676408|gb|EFY72479.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679499|gb|EFY75544.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686172|gb|EFY82156.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128449|gb|ADX15879.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195016|gb|EFZ80202.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200075|gb|EFZ85162.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201104|gb|EFZ86173.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209501|gb|EFZ94434.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212247|gb|EFZ97071.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216552|gb|EGA01278.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219901|gb|EGA04379.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225819|gb|EGA10039.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228639|gb|EGA12768.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236747|gb|EGA20823.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239752|gb|EGA23799.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242200|gb|EGA26229.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323249376|gb|EGA33292.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252291|gb|EGA36142.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256619|gb|EGA40349.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262988|gb|EGA46538.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265473|gb|EGA48969.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271739|gb|EGA55157.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332987082|gb|AEF06065.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ--------------N 295
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 296 MLMTLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 ADDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|4033456|sp|O51926|MURC_BUCAP RecName: Full=Putative UDP-N-acetylmuramate--L-alanine ligase;
           AltName: Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 483

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/401 (13%), Positives = 127/401 (31%), Gaps = 37/401 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   + +    +IP+         + ++ +    +     IA++G+ GKTT   M
Sbjct: 84  SAIPSDNPEIKAAKKKNIPILL----RAEMLQIFMQF--KFG---IAVSGTHGKTTLLAM 134

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L+  K     I                     + I E   S           + P 
Sbjct: 135 IFDILNQNKLDPTVINGGLIKSINSHAKLGF---SKYFIAEADES-----DGSFLCLNPT 186

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            A+IT I P H+ N++G  ++       F   +               +L          
Sbjct: 187 TAIITNIEPDHIDNYNGEFKLLKKTFLDFLN-KIPSYGIAILCTDNKAILNILPKIKCKV 245

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             Y F KS        K         +  + Q  ++E++ +  G H A N    +   + 
Sbjct: 246 ITYGFNKSAEFRITSYKQSDFISNFTLIRKKQLNNLEIILNLPGEHNALNATAAIAFATY 305

Query: 306 LTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNANPASMKAAISVL 360
                +   ++L  F     R +       +    Q    ++   Y  +P  +   I  +
Sbjct: 306 QKIPDEKIYQSLKNFKGTSRRFEYVGKLFIKKKSIQNKSVMLINDYGHHPTELSETIKTI 365

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YNISHVWLSGFHV 411
            +  P        ++         +++ + D  ++LS          Y+ +  ++SG   
Sbjct: 366 RKSWPKKN----LIMIFQPHRYTRTRNLYFDFIKILSQVDSLLILNVYSANESFISGADS 421

Query: 412 LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +L   + +   +V      + +  ++   L   D+++++ 
Sbjct: 422 FSLYSDIKKIKKNVILVTNRNLILNYLLPHLNGNDIILIQG 462


>gi|264680245|ref|YP_003280155.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|299533117|ref|ZP_07046502.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
 gi|262210761|gb|ACY34859.1| UDP-N-acetylmuramate--alanine ligase [Comamonas testosteroni CNB-2]
 gi|298718894|gb|EFI59866.1| UDP-N-acetylmuramate--L-alanine ligase [Comamonas testosteroni S44]
          Length = 477

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 142/435 (32%), Gaps = 44/435 (10%)

Query: 56  FILHAVQK--GAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSK 107
           F+ HA +   G+  VV +T +              IPV         +  LA   R +  
Sbjct: 54  FVGHAAENVDGSDAVVTSTAVQGDNPEVLAAREKKIPVV----PRALM--LAELMRFKQG 107

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IAI G+ GKTTT  ++T  L+        +     +              D+ + E 
Sbjct: 108 ---IAIAGAHGKTTTTSLVTSVLAEAGLDPTFVIGGKLNS---AGANAKLGQGDYIVVEA 161

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF-EGLEKTGTIFLN 226
             S    +  L     P +AV+T I   H+  +             F   +   G   L 
Sbjct: 162 DESDASFLNLL-----PVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGRAILC 216

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            D      +  K         ++      A     +  +       +       +EVV  
Sbjct: 217 VDSPAVREILPKLARPVTTYGFAEDAQVRAVNVRAEAGRMRFTVRRQNGQSYPDLEVVLS 276

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DES 345
             G H   N L  + +   L    +  ++AL  F     R +RY         T    + 
Sbjct: 277 LPGEHNVLNALSAVAVAMELEISDEALLRALEGFKGVGRRFQRYGELPAANGGTFTVIDD 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---IS 402
           Y  +P  M A ++      P     +  VL         ++    D  +V+   +   ++
Sbjct: 337 YGHHPVEMAATLAAARGAFPG----QRLVLAFQPHRYSRTRDCFEDFVKVIGSADSVLLA 392

Query: 403 HVWLSGF------HVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+ +G          +L  AL  +  V   + E +  +   I ++   GDV++   + S
Sbjct: 393 EVYAAGEAPIVAADGRSLARALRVAGKVEPVFVENIADMPAAIAANAQAGDVLLCMGAGS 452

Query: 455 CGF--YRLINLLLEE 467
            G    +L+ +L ++
Sbjct: 453 IGAVPGKLVEMLQKQ 467


>gi|77462660|ref|YP_352164.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221638517|ref|YP_002524779.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332557542|ref|ZP_08411864.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
 gi|109892733|sp|Q3J4M1|MURC_RHOS4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766019|sp|B9KNK0|MURC_RHOSK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77387078|gb|ABA78263.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           2.4.1]
 gi|221159298|gb|ACM00278.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           KD131]
 gi|332275254|gb|EGJ20569.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           WS8N]
          Length = 470

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 118/412 (28%), Gaps = 62/412 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV     V  A   LA   R+RS    IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARLRGLPV-----VRRA-EMLAELMRMRSN---IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  +             ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDK---GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     I T     ++     + +        + +            +     G H   
Sbjct: 232 GRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGTGHVIEGMSLPMPGDHNVS 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D   +AL+ F     R  +            I + Y  +P  + 
Sbjct: 292 NALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVGG----VTIIDDYGHHPVEIA 347

Query: 355 AAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +    Q           PH   R  ++  D C                  +  I+ V+
Sbjct: 348 AVLKAARQAVKGRVIAVHQPHRYSRLHSLFDDFCTC-----------FNEADVVAIAEVY 396

Query: 406 LSGFHV----------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +G               L     R       E    L   ++     GD+V
Sbjct: 397 AAGEDPIPGAGRDDLVAGLIAHGHRHARAILCED--DLERLVREQARPGDMV 446


>gi|313903534|ref|ZP_07836924.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466087|gb|EFR61611.1| UDP-N-acetylmuramate--L-alanine ligase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 478

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 101/303 (33%), Gaps = 30/303 (9%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKT 220
           + + E   S    +R+      P IAV+T + P HL ++      +  A       +   
Sbjct: 166 WVVAEACESDGTFLRYF-----PRIAVVTNVEPEHLDHYEGDFRRLLDAFRGFLGNVRPG 220

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G +    D      L A   A  ++      ++++   + R  +   E +   V  +G+ 
Sbjct: 221 GLVVACGDHPVVRQLLAGLPAGRVRVARYGVEAEDCHLRARDVQTGPEGTRFSVWQEGRP 280

Query: 281 -MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             EV     G H   N L  L +   +      A +AL+ FH  + R +     ++    
Sbjct: 281 LGEVTLAVPGEHNVLNALAALAVGLEVGVPFGVAAQALAGFHGAKRRFQ----VIHDRDG 336

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            L+ + Y  +P  +    + L             +     +    ++    + A   +  
Sbjct: 337 ILVVDDYAHHPTEI---RATLRAARQRRGAAGRVIAVFQPQRYSRTRLLMDEFAR--AFG 391

Query: 400 NISHVWLS------------GFHVLALKD--ALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           +   V L+            G     L +  A      V    + + L   + +++  GD
Sbjct: 392 DADKVILTEIYAPPGERPIPGVSSAVLAERIAQEEGRPVDLFASREDLIEHLLATVRPGD 451

Query: 446 VVV 448
           +V+
Sbjct: 452 LVL 454


>gi|312794215|ref|YP_004027138.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181355|gb|ADQ41525.1| UDP-N-acetylmuramate/alanine ligase [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 455

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 116/365 (31%), Gaps = 34/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L    +      +IAI+G+ GKTTT  M+   L                    L 
Sbjct: 92  EFLGLLMKNFKN-----VIAISGTHGKTTTTSMIGYILKKASYN---PTILVGAFVKQLG 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +    ++ + E       E         P I VI  I   HL  F  I+ I ++  +
Sbjct: 144 GNFVIGSKEYLVVEAC-----EYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKK 198

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +  +G +  N DD   + + +K H   +    S  +  +             +  +
Sbjct: 199 FAQKIPTSGFLVANCDDKNVKDVISKLHTQVVCI--STKEKADIFAGNISCNDGYYEFDV 256

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +         +  +  G+H   N L    + S L  +  T  +ALS F     R +    
Sbjct: 257 KNNNDEILAHIKLNIPGFHNVYNSLAAFAVASKLGVESITIEQALSEFCGASRRLE---- 312

Query: 333 ALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGE 383
            + +     + + Y  +P  +KA ++           +   PH   R  ++L +  E  +
Sbjct: 313 KVGEFDGIYLYDDYAHHPTEIKATLATLKKLSEGKVFAIFQPHTFSRLKSLLNEFAESLK 372

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLV 442
            +    +         N       G     L   L    I   Y    + +  ++     
Sbjct: 373 WADKVIVTDVYAAREKN-----TFGITSEKLYLKLKEIGIDCEYISNFEDIACYVVKEAK 427

Query: 443 DGDVV 447
            GD++
Sbjct: 428 KGDII 432


>gi|258404875|ref|YP_003197617.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797102|gb|ACV68039.1| UDP-N-acetylmuramate/alanine ligase [Desulfohalobium retbaense DSM
           5692]
          Length = 454

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 108/390 (27%), Gaps = 34/390 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   +      S+PV         +  LA   RL++    IA+ G+ GKTTT   
Sbjct: 72  SAVADDNPELIQAREDSVPVI----PRAEM--LAELMRLKTG---IAVGGTHGKTTTTSF 122

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L             I     +            +   G  E  ++   E       + P 
Sbjct: 123 LGTIFKEAGLDPTVIIGGRLN--------SYGSNAFLGQGEFLIAEADESDGTFLCLLPI 174

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + V+T +   H+  ++    I  +       +   G   +  DD   + L  +     + 
Sbjct: 175 MTVVTNVDADHMDFYADQTAIDDSFVHFMNQIPFYGLNVVCGDDPGVQRLLPRIKRPVV- 233

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
              ++G  ++ D +           +  +  +    E+     G H   N L    +   
Sbjct: 234 ---TYGLEEDNDVRAEILGFNGGSHFRLIYQERPIGELHLKHPGRHNVLNALAAAALALE 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRC------ALNQGFFTLIDESYNANPASMKAAISV 359
                D  I  L  F     R +            + G       +             +
Sbjct: 291 AGVSEDAVIHGLDCFGGVGRRFETKGERDGVLVVDDYGHHPTEIAATLTTARETYPERRL 350

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +    PH   R  A+ G  C   E +    +      S   I      G     L   + 
Sbjct: 351 VVLFQPHRFTRTQALFGQFCRAFEEADLLLLTEIYPASETPI-----PGVTGANLAQGIR 405

Query: 420 R--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +     V +    +     +   L  GD++
Sbjct: 406 QVSQTRVEFFNDFEAAQEALPGMLRPGDLL 435


>gi|224581972|ref|YP_002635770.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254766020|sp|C0Q5I7|MURC_SALPC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|224466499|gb|ACN44329.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/401 (15%), Positives = 127/401 (31%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++     + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P  +     V+         ++  + D A VL+   +  + +            G    
Sbjct: 370 WPDKK----LVMLFQPHRYTRTRDLYDDFANVLTQ--VDALLMLDVYPAGEAPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     +          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|213646586|ref|ZP_03376639.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 479

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM----------- 298
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 299 ---TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|212715556|ref|ZP_03323684.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660923|gb|EEB21498.1| hypothetical protein BIFCAT_00454 [Bifidobacterium catenulatum DSM
           16992]
          Length = 480

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 118/374 (31%), Gaps = 38/374 (10%)

Query: 97  KLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+   +T      I ITG+ GKT+T EM +  L++   T   +     +IG  +
Sbjct: 88  ELAWQLRVNCDSTGEPAQWIGITGTNGKTSTTEMTSEMLTACGLTAPAV----GNIGKAV 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L     L        A IT IA  HL    GI+  A+ KA
Sbjct: 144 SHAAVDPANDVLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGIDNYAADKA 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F  ++K      N DD     L   +          F  S+  D Q+           
Sbjct: 200 KVFHRVKKAL--VYNADDERVTRLAFAAETAEGCRKVGFTLSEPQDGQIGVKDGWIVDMS 257

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +  + E V     +        T+    +  A    A+        ++      R
Sbjct: 258 GIAGGKPGTPEQVAEVSEFTHLTEPDGTVYPHLLADALTALALVLGLGADKEKAIASLKR 317

Query: 332 CALNQGFFTLIDESYNANPASMKAA--------ISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +  +   +  S++           +  + ++   +   + + G + + G 
Sbjct: 318 FTPGGHRIQTVATATTQDGGSIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAK-GS 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH------VHYSET---MDGLF 434
             +    +       + I    + G     + DA   S        +  +     M+   
Sbjct: 377 RFERLVAE-----QAHTIKAAVIIGKDQQPILDAFAASAPDIPLTIIDPANNDVIMERAV 431

Query: 435 LFIQSSLVDGDVVV 448
                    GDVV+
Sbjct: 432 DAAGEYAQSGDVVL 445


>gi|17986860|ref|NP_539494.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. 16M]
 gi|256045063|ref|ZP_05447964.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565338|ref|ZP_05835822.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|265991490|ref|ZP_06104047.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|30316086|sp|Q8YI68|MURD_BRUME RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17982497|gb|AAL51758.1| udp-n-acetylmuramoylalanine--d-glutamate ligase [Brucella
           melitensis bv. 1 str. 16M]
 gi|260151406|gb|EEW86500.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. 16M]
 gi|263002274|gb|EEZ14849.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 467

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 114/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +    +P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLELPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|298346706|ref|YP_003719393.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           curtisii ATCC 43063]
 gi|298236767|gb|ADI67899.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mobiluncus
           curtisii ATCC 43063]
          Length = 495

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 72/441 (16%), Positives = 135/441 (30%), Gaps = 59/441 (13%)

Query: 58  LHAVQKGAGLVVVN-----TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATII 111
             A  KG  L +V+      + +  +   S P++  V+     L      A        +
Sbjct: 68  EAAAAKGHKLFIVSPGIAPHNPLYRLPEASAPMWSEVE-----LAWQIQEAIGNRNCKWL 122

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            ITG+ GKTTT  ML   L +       + +   + G P+        VD    EL  + 
Sbjct: 123 CITGTNGKTTTTGMLAQMLIT----GGVVATAVGNYGTPIVQVAAEGAVDALAVELSSAQ 178

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT---------GT 222
           L      T+ ++P  +V    AP H+      +E A  K++++ G+++           T
Sbjct: 179 LH----STYSLKPWASVWLNFAPDHIDWHGSADEYAWDKSKVYCGVQRAALYPATEELPT 234

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             L+      +    +        I + G     +  +             ++L   +  
Sbjct: 235 KVLSKRFVQEQGFPVEKCIGLTPGIPTPGFLGVIEDVIVDRAFGENNETQALELATFADL 294

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
               G     +  +  TL    +  +     +         E    R       G  T I
Sbjct: 295 EHLSGAKTPTSALLADTLAAAGLARSYGLQPVWVRRGIREFELANHRRAVVGTFGGVTYI 354

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           D+S   N  +  A++  ++      +     V GD        Q FH  +        + 
Sbjct: 355 DDSKATNTHAAAASLRDIAD-----KRAVWIVGGD-----AKGQDFHSLV--QAVAPKVK 402

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSET-------MDGLFLFIQSSLVDGDVVVV---KSS 452
              L G      + A   +      +        M+      ++  V GD V++    +S
Sbjct: 403 AAVLIGLDPEPFESAFAENGAGIPVKRVAPGDNLMERTLNEARALAVSGDTVLLAPACAS 462

Query: 453 ---------NSCGFYRLINLL 464
                        F ++   L
Sbjct: 463 WDQFNNYHERGDQFAQVARRL 483


>gi|123969098|ref|YP_001009956.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. AS9601]
 gi|123199208|gb|ABM70849.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 476

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 65/416 (15%), Positives = 125/416 (30%), Gaps = 62/416 (14%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +  +    I V           ++ VA  +      I ITG+ GKTT   +L+  L
Sbjct: 90  DHVTIVELKKKGIRVI---------GEINVAWEILKDTNWIGITGTNGKTTVTHLLSHIL 140

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVD---FGIFELGMSHLGEIRFLTHLVRPHIA 187
                          +IG PL         +   + + EL    +     ++  V+P+I 
Sbjct: 141 CDTGLYAPF----AGNIGTPLCKYAYSKKHEKIDWVVAELSSYQI----EISPEVKPNIG 192

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
           + TT    HL     +E   + K  + E  +     + + +   +    ++   +     
Sbjct: 193 IWTTFTEDHLERHKTLENYFNIKKSLLEKSDFRIYNYDDKNLRNYYSSLSRGVWITTSLD 252

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            S     + D+ +       E+                         N+   L +++   
Sbjct: 253 KS--NFIHCDYWIDDQAYIVERGKKLF---------KLEHFSLKGMHNLQNLLLVIAAAR 301

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
               +  K        +    R           +I++S   N  S  A IS +       
Sbjct: 302 KVGLSGKKIKDSLSNYKQLPHRMETIYKNNGLEIINDSKATNFDSSIAGISSI------- 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR---SIHV 424
           EG+ I + G   +  E S+   +   +V  +      +L G     LK AL       ++
Sbjct: 355 EGQIIIIAGGRLKGNEYSEWIKVLKKKVKCV------FLFGESSKVLKMALINEGFKKNI 408

Query: 425 HYSETMDGLFLFIQSSLVDG--DVVVVKSS------------NSCGFYRLI-NLLL 465
                +  L  F+   L +     ++   S                F +LI   L 
Sbjct: 409 FEFSELKELLNFVFHYLQNNRVGTLLFSPSCSSFDQFKNYEERGDYFKKLISEKLK 464


>gi|170766667|ref|ZP_02901120.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
 gi|170124105|gb|EDS93036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia albertii TW07627]
          Length = 457

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 117/375 (31%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  +V    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVSPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|16759124|ref|NP_454741.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140674|ref|NP_804016.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194445444|ref|YP_002039361.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197247646|ref|YP_002145115.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242404|ref|YP_002214081.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207855643|ref|YP_002242294.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213052847|ref|ZP_03345725.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213426154|ref|ZP_03358904.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213621331|ref|ZP_03374114.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|238911186|ref|ZP_04655023.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289823733|ref|ZP_06543345.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|20532168|sp|Q8Z9G8|MURC_SALTI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706327|sp|B5F7W5|MURC_SALA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706328|sp|B5FI73|MURC_SALDC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226706329|sp|B5R2M5|MURC_SALEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620428|sp|B4SU51|MURC_SALNS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293609|pir||AF0518 UDP-N-acetylmuramate,alanine ligase [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501414|emb|CAD01286.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136298|gb|AAO67865.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|194404107|gb|ACF64329.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197211349|gb|ACH48746.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197936920|gb|ACH74253.1| UDP-N-acetylmuramate--alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|206707446|emb|CAR31719.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326621825|gb|EGE28170.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 106/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM----------- 298
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 299 ---TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|315927702|gb|EFV07031.1| hypothetical protein CSQ_0822 [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 289

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFF-----NND-KKEIAQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKEIFYFRVENLERALVRFLRFF 90


>gi|62178696|ref|YP_215113.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|68565665|sp|Q57TC9|MURC_SALCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|62126329|gb|AAX64032.1| L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322713149|gb|EFZ04720.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 491

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/400 (13%), Positives = 105/400 (26%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +        + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+       E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM----------- 298
           +G S++AD ++  ++Q   Q    +  QG     V                         
Sbjct: 250 YGFSEDADVRVEDYQQIGSQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 299 ---TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
               +                       P  G+        + G      ++      + 
Sbjct: 310 DDDAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
                ++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKKLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|320354033|ref|YP_004195372.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
 gi|320122535|gb|ADW18081.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobulbus propionicus
           DSM 2032]
          Length = 482

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 101/300 (33%), Gaps = 27/300 (9%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               RPH  ++T++   H   F+ +  I ++ AE    +   G +  + DD     L   
Sbjct: 189 FQHYRPHCTILTSVEFDHADIFADLAAIKASFAEFIGRIPPQGALVAHLDDPVVAELAK- 247

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNML 297
              + +  +  +G+    ++++   +     S   V  +G+          G H   N L
Sbjct: 248 ---VALCPVIGYGRGSGCEWRVVDLQVRGLASEFTVVHRGQPLGRCRLPMPGVHNCLNAL 304

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM---- 353
             + ++S L    +T ++ L+ F   + R    +          + + +  +P ++    
Sbjct: 305 AVIALLSHLGFAFETIVQGLASFEGVKRR----QQVRGVVRGITVVDDFAHHPTAVRETL 360

Query: 354 ------KAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
                      ++    P     R AV         G   Q    +    L    IS  +
Sbjct: 361 QALRLAWPDTRLVVVFEPRTNSSRRAVFQQDYATVFGSADQVLIREHVP-LETVPISEQF 419

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
            SG       D   R I  H     + +   +      GDVVV+  SN  GF  +   LL
Sbjct: 420 SSGQLA---ADLALRGIQAHAYTDTEAILDALARQCQPGDVVVIL-SNG-GFDNIHQRLL 474


>gi|260591745|ref|ZP_05857203.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
 gi|260536029|gb|EEX18646.1| UDP-N-acetylmuramate--alanine ligase [Prevotella veroralis F0319]
          Length = 459

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 99/348 (28%), Gaps = 48/348 (13%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHKSHLDCNAFLGGISKN--YGTNYILSDHSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++  G + ++ +  
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQPGGALIIHKNLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  K H      +Y + + +          +    ++  V       +V       
Sbjct: 228 M------KQHVQEGVKVYDYSREEGDFHAENIRIEKGTITFDFVSPIETVKDVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +   + +  +   + R           F +          
Sbjct: 282 INIENGIAAMAMAQLNGCTAEELREGMRTYGGVDRRFDFKIKNDRHVFLSDYGHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   + +        +          +   ++ F+ D A+ L   +   V L+   
Sbjct: 342 QSAKSLKELYADRKITVIFQPH--------LYTRTRDFYKDFADAL--SHFDEVILTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                   G     + D L  +I               +  +   DV+
Sbjct: 392 PAREQPIEGVTSKLIYDNLRPNI--------------AKQMIKKDDVL 425


>gi|163760792|ref|ZP_02167872.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hoeflea
           phototrophica DFL-43]
 gi|162282114|gb|EDQ32405.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase [Hoeflea
           phototrophica DFL-43]
          Length = 473

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/375 (14%), Positives = 102/375 (27%), Gaps = 46/375 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  IAITG+ GK+TT  ++   +    +          +IG  +       D    + 
Sbjct: 112 PDAAFIAITGTNGKSTTTALIAHLIEHSGRD----AQLGGNIGTAVLTLEPLTDDRVYVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E     +     L   + P   ++  + P HL     ++  A  K  +    +       
Sbjct: 168 ECSSYQID----LAPSLDPSAGLLLNLTPDHLDRHGSMQHYAEVKTRLVAQSDMAIIGVD 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           +                  +   S   S+       K +Q ++ +      +   +  + 
Sbjct: 224 DDWCRDIATQIEADGRKVERISKSLPLSRGIFADGGKIRQAADGAVQ----EIADLSGIP 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H AQN    +    +           L+ F   + R    +    QG    +++S
Sbjct: 280 TLRGQHNAQNAAAAIAACRVTGLSDAEIRTGLATFPGLKHRM---QPVGRQGRVVFVNDS 336

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+     I     G          E G  +   +           I+  +
Sbjct: 337 KATNAEAAAPALQSFKPIYWIAGGLA-------KEGGIAALEPYFP--------RIAKAY 381

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS------ 452
           L G        ++        S T+D                   V++    +S      
Sbjct: 382 LIGEAAAEFAASIGERAPFEISGTLDRAVANAARDAGQDAAEMPAVLLSPACASFDQYRN 441

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 442 FEVRGDAFVSLVAAL 456


>gi|33597711|ref|NP_885354.1| cyanphycin synthetase [Bordetella parapertussis 12822]
 gi|33574139|emb|CAE38469.1| cyanphycin synthetase [Bordetella parapertussis]
          Length = 857

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 115/383 (30%), Gaps = 46/383 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------- 155
           R   +  ++A+ G+ GKTTT  +    L           S   ++G              
Sbjct: 465 RDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTGDCSGPRS 524

Query: 156 -----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIA 207
                +  DVD  + E      G +R      R ++A++T I          I   E++A
Sbjct: 525 ARRLLLHPDVDAAVLETA--RGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYISTVEDLA 582

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQ 259
             K  I + ++  G   LN  D     + +                 + +     +    
Sbjct: 583 VVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQGHRVVY 642

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  + Q   EV      + +   G      +N +  L     L  D DT   AL++
Sbjct: 643 RDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTIRHALAI 702

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F              +    TLI + Y  NP +++A +  +  +        I+  GD  
Sbjct: 703 FVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPARRRSVVISGAGD-- 759

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
                 +         +       V L           G  V  L+  L ++    + + 
Sbjct: 760 ---RRDEDLRQQ--TEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G           L  GD+ ++
Sbjct: 815 IQGEFVAIDAALQRLAPGDLCLI 837


>gi|28871542|ref|NP_794161.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966566|ref|ZP_03394717.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|302059793|ref|ZP_07251334.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato K40]
 gi|302131740|ref|ZP_07257730.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999568|sp|Q87WY6|MURC_PSESM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28854793|gb|AAO57856.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928416|gb|EEB61960.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           tomato T1]
 gi|331016735|gb|EGH96791.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 486

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 136/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVRDILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S+++D +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVDDYGHHPREVAAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVYPAGEEPVPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|157736775|ref|YP_001489458.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
 gi|157698629|gb|ABV66789.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Arcobacter butzleri RM4018]
          Length = 429

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 50/433 (11%), Positives = 114/433 (26%), Gaps = 54/433 (12%)

Query: 31  SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDD 90
           + +S        F      H     ++ +A + G    + ++++   +   SI + G   
Sbjct: 11  TDNSAEADKNSIFV--VSKHN--EKYLQNAKENGCIEFLNSSELKNHLDMSSIKIIG--- 63

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG-V 149
                       +  +  TI  I  S+G     +       +  +      +    +G  
Sbjct: 64  ------ITGTNGKTTTATTIYKILLSLGFKVALQGTRGFFINETQVEDYSLTTPIQLGNF 117

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                 +     F + E+  S     +     +   + + T I   HL     IEE    
Sbjct: 118 VHIQKAIQNGCQFFVMEV--SSHAIEQNRIEGLTFALKIHTNITRDHLDYHKTIEEYIRV 175

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K                        +            +++     +D+++ K++     
Sbjct: 176 KNSFLSDESVK-----------LVNIDDNVMKYNFTNAFTYSLKNLSDYKVTKYEFEH-G 223

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +E   + K+       +G     N++ ++  V I T      I        K      
Sbjct: 224 MKVEFSYKEKTYTFTSMMMGIFNIYNLMASIAAVHITTQKSLEDI----CQTLKNFSCVS 279

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  +      +I +  +           +   +        I V G     G    S  
Sbjct: 280 GRMEIVSLNPLVIVDFAHTPDG-------MDEVLKSFPNKDIICVFGA----GGNRDSAK 328

Query: 390 IDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
             L   ++     H+ ++  +            +   +    +V              S 
Sbjct: 329 RPLMGEVAKKYSKHIIVTSDNPRFEEPKMIIEDILAGINDKSNVEVLIDRKEALKKAISL 388

Query: 441 LVDGDVVVV--KS 451
             +  V++V  K 
Sbjct: 389 ANEKSVILVLGKG 401


>gi|90413038|ref|ZP_01221036.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
 gi|90326053|gb|EAS42492.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum 3TCK]
          Length = 447

 Score = 47.5 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 114/371 (30%), Gaps = 51/371 (13%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++AITGS GK+T   ++              G+          L  +  + D  + EL 
Sbjct: 109 PVVAITGSNGKSTVTSLIGEMAKEASINVGVGGNIGF-----AALDMLANEHDLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  +    AV   ++  H+  + GIE+ + AK  IFE             
Sbjct: 164 SFQL----ETTSSLELKAAVYLNLSEDHMDRYDGIEDYSLAKMRIFEH------------ 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L   +         SF     +     +          E     K   +  + I
Sbjct: 208 ----AELAVYNRDDLATLPTSFSHKITSFGFDNQDYGLVTLDGEEFLAVDKQPIMKTNDI 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+  +L  +++  A       A        G   R +  +NQ     +++S   
Sbjct: 264 ALVGRHNVANSLAALALADAVNIDHQAACRALQRYNGLAHRCQLVVNQHDVKWVNDSKAT 323

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+  L     +  G+   ++G   +  + S     +L  VL+  N+  ++  G
Sbjct: 324 NLASTLAALKGL-----NLPGKLHLLVGGDGKGADFS-----ELKPVLADLNV-QLYCFG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
                    +   I    +E M         +   GD++++    +S             
Sbjct: 373 RDGNQFMSLVDAPI---CTEAMAEAMTIAADTAQKGDMILLSPACASFDQFPNFMARGDA 429

Query: 457 FYRLINLLLEE 467
           F      L   
Sbjct: 430 FVEQAKALQHR 440


>gi|311063964|ref|YP_003970689.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD
           [Bifidobacterium bifidum PRL2010]
 gi|310866283|gb|ADP35652.1| MurD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium bifidum PRL2010]
          Length = 476

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 118/367 (32%), Gaps = 41/367 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  + ITG+ GKT+T EM +  L +       +     +IG  ++ A +  D D 
Sbjct: 96  RTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAV----GNIGKAVSHAAVDPDNDA 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    GIE  A+ K+++F  + +   
Sbjct: 152 LCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRRALV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWM 272
              +          A +     +  ++ G               D          +++ +
Sbjct: 208 FNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRSGVAGGAFGDETRL 267

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +   +      +  H+  + +  L +   +  D+D A+ AL  F P   R +    
Sbjct: 268 APVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAFAPGGHRIQTVAT 327

Query: 333 --ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G    ID+S   N  +        + +S       + + G + + G   +    
Sbjct: 328 AATGDGGSIRFIDDSKATNAHA------ARASLSSFAPKSVVWIAGGLAK-GSRFEQLVA 380

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---------GLFLFIQSSL 441
           D       + I    + G     + +A   S        ++                +  
Sbjct: 381 D-----QAHTIKAAVIIGKDQKPMLEAFAASAPGIPLTVIEPEPSDTVMARAVDAAGAYA 435

Query: 442 VDGDVVV 448
             GDVV+
Sbjct: 436 GTGDVVL 442


>gi|33602560|ref|NP_890120.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
 gi|33576999|emb|CAE34079.1| cyanphycin synthetase [Bordetella bronchiseptica RB50]
          Length = 857

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 115/383 (30%), Gaps = 46/383 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------- 155
           R   +  ++A+ G+ GKTTT  +    L           S   ++G              
Sbjct: 465 RDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTGDCSGPRS 524

Query: 156 -----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIA 207
                +  DVD  + E      G +R      R ++A++T I          I   E++A
Sbjct: 525 ARRLLLHPDVDAAVLETA--RGGVLREGLAFDRCNVAIVTNIGMGDHLGLGYISTVEDLA 582

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQ 259
             K  I + ++  G   LN  D     + +                 + +     +    
Sbjct: 583 VVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQGHRVVY 642

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  + Q   EV      + +   G      +N +  L     L  D DT   AL++
Sbjct: 643 RDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTIRHALAI 702

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F              +    TLI + Y  NP +++A +  +  +        I+  GD  
Sbjct: 703 FVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPARRRSVVISGAGD-- 759

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
                 +         +       V L           G  V  L+  L ++    + + 
Sbjct: 760 ---RRDEDLRQQ--TEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G           L  GD+ ++
Sbjct: 815 IQGEFVAIDAALQRLAPGDLCLI 837


>gi|84501756|ref|ZP_00999928.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
 gi|84390377|gb|EAQ02936.1| UDP-N-acetylmuramate--L-alanine ligase [Oceanicola batsensis
           HTCC2597]
          Length = 469

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 125/403 (31%), Gaps = 49/403 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      L       +PV     V  A   LA   RL+S    IAI G+ G
Sbjct: 71  AEVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRLKSN---IAIAGTHG 121

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L +           N  I             ++ + E   S        
Sbjct: 122 KTTTTTMVATLLDA---GGIDPTVINGGIIHAYGSNARVGLGEWMVVEADES-----DGT 173

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IAV+T I P H+ ++   + +     +    +   G      D    + L  +
Sbjct: 174 FNRLPATIAVVTNIDPEHMDHWGDFDTLRQGFLDFVSNIPFYGLAVCCTDHPEVQNLVGR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T     ++      L   K  +    +      +         G H   N L 
Sbjct: 234 ITDRRVATYGFNAQADIRAVNLTYRKGVAHFDVLLQAEGDRIDGCSLPMPGDHNVSNALS 293

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    D    AL+ F     R  R            + + Y  +P  + A + 
Sbjct: 294 AVAVARHLGMKKDEIRTALANFGGVNRRFTRVGEVGG----VTVIDDYGHHPVEIAAVLK 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN------ISHVWLSGFHV- 411
                    EGR IAV              H    +  + +N      I+ V+ +G    
Sbjct: 350 AA---RQATEGRVIAV-----HQPHRYTRLHTLFEDFCACFNEADVVAIAEVYAAGEDPV 401

Query: 412 -----LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                  L   L R  H       + D L   ++    +GD+V
Sbjct: 402 PGATRDDLVAGLIRHGHRHARAINSEDDLERLVREQAQEGDMV 444


>gi|320172818|gb|EFW48050.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSCIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVF---------------HPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFLGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|159897146|ref|YP_001543393.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890185|gb|ABX03265.1| cyanophycin synthetase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 894

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 117/383 (30%), Gaps = 45/383 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR 155
           S+  + A+TG+ GKTTT  M    L                          +  P +   
Sbjct: 489 SRIPLAALTGTNGKTTTARMTAHILKMAGYHVGMTSTDGIYIDGERVLRGDMTGPKSARM 548

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEI 213
           +  D       L  +  G +R         +  I  I+  HL       +EE+A  K+ I
Sbjct: 549 VLRDPTVDAAVLETARGGILREGLGYDEVDVGAILNISADHLGLRGIDTLEEMAKVKSLI 608

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR------------ 261
            E +++ G   LN DD     L A++ A      +        +                
Sbjct: 609 IEVIKRDGWAVLNADDPLVAKLVARTRAKPFYFSFDPANPLVREQVQVGGRAIVVEKGVN 668

Query: 262 -KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  ++      L    +     G       N L    +   L   ++   + L  F
Sbjct: 669 GDMVTLYDKGRHIPLLWTHLIPATLEGRAKFNVANALAAAALAYSLGISIENIRQGLRTF 728

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                +        ++  F +I + Y  NPA++   I V+ Q+   G+   +  +     
Sbjct: 729 TTSFYQTPGRLNVFDEHPFRVILD-YGHNPAAVSNLIDVVRQLPREGKAICVISVP---- 783

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSI----HVHY 426
            G+  +    ++  +L       + +           G     +++ L  +     ++HY
Sbjct: 784 -GDRREVDAREIGRLLGAGVFDQIIIKEDTSLRGRKEGEMPGYIREGLAEAGFAESNIHY 842

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           +                GD+V+V
Sbjct: 843 TRHEREAIAMALDGAQRGDLVMV 865


>gi|91203776|emb|CAJ71429.1| similar to UDP-N-acetylmuramate:L-alanine ligase MurC [Candidatus
           Kuenenia stuttgartiensis]
          Length = 471

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 114/417 (27%), Gaps = 41/417 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +V+V++ +      +   +     +    N LA     +     IA+ G+ GKTT   M+
Sbjct: 80  VVIVSSAIEEQNPDIKKALSLNKKITTRSNILAEMFNTKFG---IAVGGTNGKTTVSSMV 136

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L     +   I                P +   G  ++      E         P I
Sbjct: 137 GYVLDHAGMSPTIIVGGCIKN---YLTPDFPGNAKVGDSDIVAIEADESDGSIVNYTPKI 193

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           ++IT ++         IE I+       +         L   +     LK          
Sbjct: 194 SIITNMSKD----HKPIESISKLFETFSQNTRD-----LLIINDDCPELKKIPFRHK--N 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             +FG  K+AD                               G H   N L  + +   +
Sbjct: 243 TITFGLRKSADIYASNIINRP----CLSTFDINGQSFELKLPGIHNVSNALAAISVARHM 298

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    AL  +   + R                  +     A+++A     +++   
Sbjct: 299 NIKDNEIAAALYEYKGVQRRMDNIGEYNGIKVIDDFAHNPEKIAAAIRAVKIGGNRVIAV 358

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSG-------FHVLALKD 416
            +         M E             + LS  ++     ++  G            +++
Sbjct: 359 FQPHGFFPARFMRE------ELINAFIQSLSPEDVLFMPEIYYIGGSVSKEISSADLIRE 412

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINLLLEEFP 469
                 +  + E    +   I  ++  GD ++V  +         + +++ L +  P
Sbjct: 413 IGKSGRNAFFVEKRGDIIPEIVRTVEKGDCILVMGARDNTLTDFCHEILHTLQKSMP 469


>gi|167647631|ref|YP_001685294.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Caulobacter
           sp. K31]
 gi|189082872|sp|B0T833|MURD_CAUSK RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|167350061|gb|ABZ72796.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Caulobacter sp.
           K31]
          Length = 469

 Score = 47.2 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 26/329 (7%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              K  IIAITG+ GK+TT  ++        +          +IG  +            
Sbjct: 112 EHKKPKIIAITGTNGKSTTTALIGHLCRQAGRD----TRVGGNIGEGVLGLEDMHGGAVY 167

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + EL    L         ++P   V+  I+P HL    G++   +AK  IF    K  T 
Sbjct: 168 VLELSSYQLDLTS----SLKPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKGDTA 223

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +  DD + + +  +  A   +TI+     K     +   +     +  E   +   +  
Sbjct: 224 IIGVDDPWCQQICTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGERVTEMADLLR 283

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  QN          +      A+  L  F     R          G    ++
Sbjct: 284 ARSLPGRHNWQNAAAAYAAAKAIGIPAHQAVDGLMSFPGLAHRM---ETVGKLGKVRFVN 340

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  + + A+S   +      G   A  G + ++ +L                ++ 
Sbjct: 341 DSKATNADAARQAMSSYPKFYWIAGGVPKA--GGIDDLVDLFPR-------------VAG 385

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDG 432
            +L G         L           ++ 
Sbjct: 386 AYLIGQAAEDFGKTLEGKAPARQCGDIET 414


>gi|325293464|ref|YP_004279328.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061317|gb|ADY65008.1| UDP-N-acetylmuramate-alanine ligase [Agrobacterium sp. H13-3]
          Length = 471

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 136/404 (33%), Gaps = 42/404 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VVV+T +  +   L         ++     LA   R R     IAI G+ GKTTT  
Sbjct: 67  AEVVVVSTAIKKNNPELIAAREKHLPIVRRAEMLAELMRFR---NAIAIGGTHGKTTTTS 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L +       I     +            + ++ + E   S           +  
Sbjct: 124 MVATLLEAGNLDPTVINGGIIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +     +
Sbjct: 176 DVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIEDRKV 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQNML 297
               ++G++  AD +    +    +S  +V+++           ++V    G H   N  
Sbjct: 236 I---TYGENPQADVRFSNVRIDGTRSIFDVEIRRRRTGKIFSFTDLVLPMPGRHNVSNAT 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK--- 354
             + + + L        K L+ F   + R         +     + + Y  +P  +K   
Sbjct: 293 AAIAVANRLGISEADIKKGLASFAGVKRRFT----LTGEANGVQVFDDYGHHPVEIKAVL 348

Query: 355 ------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     +++   PH   R  ++  D       + +    +   +       +   G
Sbjct: 349 AAAREACKGRIVAVHQPHRYSRLSSLFDDFAHCFNDADTI---ILAPVYAAGEDPI--EG 403

Query: 409 FHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
               AL  A+  + H    + E  + L   +      GD VV++
Sbjct: 404 ASSEALVSAIKAAGHRDARFLEKREDLASMVAGIANPGDFVVLL 447


>gi|167946133|ref|ZP_02533207.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate--D-alanyl-D-alanyl ligase [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 52

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
           +LGD+ E+G+ +   H  + E      I  +W  G        A   +
Sbjct: 1   MLGDLAELGQCAVRLHRQIGEQAQRAGIDVLWSVGELSREASVAFAGA 48


>gi|323190227|gb|EFZ75503.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli RN587/1]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 126/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++L  + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRLDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|328955358|ref|YP_004372691.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
 gi|328455682|gb|AEB06876.1| UDP-N-acetylmuramate--L-alanine ligase [Coriobacterium glomerans
           PW2]
          Length = 473

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 72/429 (16%), Positives = 126/429 (29%), Gaps = 65/429 (15%)

Query: 55  DFILHAVQKGAGL----------------VVVNTDMVASIGSL------SIPVFGVDDVL 92
            +I   ++ G  +                VVV+T +  +   L       IPV+    +L
Sbjct: 49  RYIRQLLRAGVSVHVGHDASLIDEAEPDVVVVSTAIPETNPELVRARELGIPVWPRAKML 108

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL             T IA+ G+ GKTTT  M       + +           I     
Sbjct: 109 AALG---------HGCTTIAVAGTHGKTTTASMCATM---LDRMGLDPSFLIGGIVEGYK 156

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                    + + E   S           + P + V+T +   HL ++  + EI +  A+
Sbjct: 157 TNGRNGSGTYFVAEADES-----DSSFLYLEPRVVVVTNVEADHLDHYGSLAEIENTFAQ 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               + + G I    DD     L  +S +  I T     ++             +    +
Sbjct: 212 FMSLVGEQGVIVACGDDKQLYELA-RSTSKRIVTYGFDARNDIVCEVCDDRCAQASGCRI 270

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                      + H  G H   N    +G+   L  D   A +ALS F     R      
Sbjct: 271 RFPDGRLHEVDIAHNPGRHNMLNASAAMGVAFALGLDTAAAARALSTFEGVRRRFT---- 326

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +       + + Y  +P  +KA ++    +          V     +    S+      
Sbjct: 327 RVGDVCGVTVVDDYGHHPTEIKATLAAARGL---DYRHIDVVF----QPHRYSRLKAFLD 379

Query: 393 AEVLSLYNISHVWLS-----------GFHVLALKDALP---RSIHVHYSETMDGLFLFIQ 438
               +  +   V L            G    AL D +        V Y      L   ++
Sbjct: 380 DFADAFADADKVVLIDVFSAGEMPIPGVTSKALADTVRARHPDKQVSYVSDRMALMERLE 439

Query: 439 SSLVDGDVV 447
           +    GD++
Sbjct: 440 TITEPGDLL 448


>gi|111115652|ref|YP_710270.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia afzelii PKo]
 gi|216263556|ref|ZP_03435551.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
 gi|123341262|sp|Q0SM34|MURC_BORAP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110890926|gb|ABH02094.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii PKo]
 gi|215980400|gb|EEC21221.1| UDP-N-acetylmuramate--alanine ligase [Borrelia afzelii ACA-1]
          Length = 468

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 129/386 (33%), Gaps = 33/386 (8%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +     L+IP+    +V   L +L+           + I GS GKTTT   L +  + 
Sbjct: 88  PALLEAKELNIPILSYSEV---LGELSRKYYS------VGIAGSHGKTTTTAFLGLLFNK 138

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +      I   +         + +    +  I E        + F      P++ ++T I
Sbjct: 139 LGLNPNVIVGSSVKD--FGDNSAIAGISNIFIAETCEYKKHFLHFS-----PNMLILTNI 191

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  F   E +  A  +    L+K G + +N DD+    +  +        I+SFG 
Sbjct: 192 DYEHVDFFENYEALEDAFLQYINNLKKNGILIINSDDNNLLKI-KRQINRKDINIFSFGS 250

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVD 311
              ++FQ+      +E                       + +  +L     +      + 
Sbjct: 251 KDLSNFQISNIVVKNEYFCFSFLGLCNVELRTVLFHNVLNFSAALLALNLFLESNGKSIF 310

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +A+          KR    + +    +  + Y  +P  ++  +  +     +     
Sbjct: 311 DFEEAVKKIAKNYSGIKRRVEVVKEKKGVIYMDDYAHHPREIRDTLLGIKDFYKNK---- 366

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR- 420
             +L  M      ++ F  D  EVLS+ +I  +                 + L   + + 
Sbjct: 367 RIILDFMPHTFTRTKEFFNDFVEVLSVADILILHNIYLSNRENFNPDELSVKLFLNIKKI 426

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDV 446
           + + ++ + +     FI+S L+ GD+
Sbjct: 427 NKNTYFFKDVKDSVEFIKSLLISGDL 452


>gi|291522020|emb|CBK80313.1| UDP-N-acetylmuramate--L-alanine ligase [Coprococcus catus GD/7]
          Length = 458

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 121/380 (31%), Gaps = 51/380 (13%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++            IA++G+ GKTTT  ML+  L +                    
Sbjct: 101 ELLGQIMTNY-----TNAIAVSGTHGKTTTTSMLSHILLAADTDPTISVGGILKAIHGNI 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   D  I E       E         P + +I  I   HL  F  I +I  +  +
Sbjct: 156 RVG---HSDNFITEAC-----EYTNSFLKFNPSLEIILNIEEDHLDFFKDINDIRHSFRK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ--CSEQS 270
             E L+    + +N + S    +           I ++G     D+          ++ S
Sbjct: 208 FAEKLDADDILVINGEISHVSEITD----GLPCHIITYGLKPECDYAAENITFDEFAKGS 263

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  +    K   +  +  G H   N L  +     L   +D   K L  F   + R +  
Sbjct: 264 FDLIAYGKKIDHIQLNVAGIHNVSNALAAIASARELHIPMDIIKKGLMAFEGTDRRFEY- 322

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                Q     + + Y  +P  +KA ++   +       +   V          +++F  
Sbjct: 323 ---KGQFNGVTVIDDYAHHPTEIKATLTAAQKYPH---RQIWCVFQPHTY--TRTKAFFH 374

Query: 391 DLAEVLSLYNISHVWLSGF-----------HVLALKDAL-PRSIHVHYSETMDGLFLFIQ 438
           + A+ LSL     + L+             H   ++  L  +    +Y  + + +  F++
Sbjct: 375 EFADALSLA--DKIVLADIYAARETDPGDIHSRDIQKLLLEKGKEAYYFPSFEEIEKFLR 432

Query: 439 S---------SLVDGDVVVV 449
                     ++  GDVV+V
Sbjct: 433 EKCINGDLLITMGAGDVVLV 452


>gi|227885004|ref|ZP_04002809.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|227837833|gb|EEJ48299.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli 83972]
 gi|307551935|gb|ADN44710.1| UDP-N-acetylmuramate-L-alanine ligase [Escherichia coli ABU 83972]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDSAQVAEMLAPVLTGNDLILVQG 464


>gi|66047328|ref|YP_237169.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
 gi|75500775|sp|Q4ZNZ1|MURC_PSEU2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|63258035|gb|AAY39131.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 486

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 136/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGHVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +S  +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQSGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|262273815|ref|ZP_06051628.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
 gi|262222230|gb|EEY73542.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Grimontia hollisae
           CIP 101886]
          Length = 445

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 74/444 (16%), Positives = 146/444 (32%), Gaps = 71/444 (15%)

Query: 17  HSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH--AVQKG---------A 65
           H +       V    ID+R+  P             G D +    A+  G         A
Sbjct: 24  HLVRKDDGATVK--VIDTRATPP-------------GADQLPQGVALHAGGWNMDWLLSA 68

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
            L+V +  +  +   L +     +  +  +  + + AR   +A +I ITGS GK+T   +
Sbjct: 69  DLIVASPGIALATPELKVAA---EKGIEIVGDIELFARD-VEAPVIGITGSNGKSTVTSL 124

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++        G+          L  +    D  + EL    L      T  +   
Sbjct: 125 VGEMANAAGINVGVGGNIGF-----AALDMLANGHDLYVLELSSFQL----ETTSSLNLD 175

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
            AV   ++  H+  + G+ +   AK  IF+  +                  A  +    +
Sbjct: 176 AAVFLNLSEDHMDRYEGMADYRDAKLRIFDQAK-----------------LAVWNRDDGQ 218

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T    G + +  F   ++    +     +  +G+ + +    I      N+   L  +++
Sbjct: 219 TKSGSGAAVSFGFSSGEYTLTEQGGAEWLTAKGEPV-MAVSEIALVGRHNVANCLAAMAL 277

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             A                G   R +  +       +++S   NPAS  AA+  L     
Sbjct: 278 ADAAGIDRKAQRKAMREYRGLPHRCQQVVEHNGVLWVNDSKATNPASTLAALDGLQL--- 334

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH 425
              GR   ++G   +  + S      L  VL   N+  ++  G    A    + + +   
Sbjct: 335 --AGRLHLLVGGDGKGADFSL-----LKPVLDTLNV-TLYCYGRDRQAFTSLVEKPV--- 383

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV 449
            ++TM         +   GD+V++
Sbjct: 384 VTDTMQQAMDIAAENANPGDMVLL 407


>gi|228470130|ref|ZP_04055039.1| folylpolyglutamate synthase [Porphyromonas uenonis 60-3]
 gi|228308268|gb|EEK17123.1| folylpolyglutamate synthase [Porphyromonas uenonis 60-3]
          Length = 439

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +    +A+   +      +++     + +    GD++ V  SN      ++  LL+ +
Sbjct: 376 EELQQRAEAI--GLRGRAYPSVEEALQEVLAHANAGDLIFVGGSNF-----IVAELLKSY 428

Query: 469 PAIQ 472
           P  Q
Sbjct: 429 PMTQ 432


>gi|295688559|ref|YP_003592252.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
 gi|295430462|gb|ADG09634.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Caulobacter segnis
           ATCC 21756]
          Length = 470

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 106/330 (32%), Gaps = 26/330 (7%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
             IIAITG+ GK+TT  ++    +S  +          +IG  +            + EL
Sbjct: 116 PKIIAITGTNGKSTTTALIGHLCASAGRDTRIG----GNIGQGVLGLEDMHGGAVYVLEL 171

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L         + P   V+  I+P HL    G++   +AK  IF    K  T  +  
Sbjct: 172 SSYQLDLTS----SLHPDAVVLLNISPDHLDRHGGMDGYIAAKRRIFLNQGKGDTAIIGV 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           DD + + +  +  A   +TI+     K     +   +     +  E  ++   +      
Sbjct: 228 DDPWCQQICTEITAANRRTIWPISAGKAMGRGVYALQGVLYDATGERVVEVADLLRARSL 287

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  QN          +   +  A+  L  F     R          G    +++S  
Sbjct: 288 PGRHNWQNAAAAYAAARAIGIPMQDAVDGLMTFPGLAHRM---ETVGKIGKVRFVNDSKA 344

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  + + A+S   +      G   A  G + ++         DL   ++       +L 
Sbjct: 345 TNADAARQAMSSYPKFYWIAGGVAKA--GGIDDL--------KDLFPRVAKA-----YLI 389

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFI 437
           G         L     V  S T++      
Sbjct: 390 GEAAEPFSWTLAGKAEVAMSGTLERAVSQA 419


>gi|256825479|ref|YP_003149439.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
 gi|256688872|gb|ACV06674.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Kytococcus
           sedentarius DSM 20547]
          Length = 528

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 116/384 (30%), Gaps = 46/384 (11%)

Query: 62  QKGAGLVVVN------TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKA-TIIAI 113
           ++GA +VV +      T ++ +     IPV+  V        +LA   R    A   + +
Sbjct: 110 EQGAEVVVTSPGLRPSTPLLEAARRAGIPVWSEV--------ELAWRMRPSQGAAPWLCV 161

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHL 172
           TG+ GKTT   MLT  L +  +          ++G P+  A +       I  EL    L
Sbjct: 162 TGTNGKTTVVRMLTAMLEAGGER----AVAAGNVGTPIMEAILDPTRFGAIAVELSSFQL 217

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                    V P  + +  IA  H+     IE  A  K  I            N  D   
Sbjct: 218 HHT----WTVSPEASCVLNIAADHVDWHGSIEAYAGDKGRIHHN--AQVAAVYNVQDEVT 271

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-----SMEVVHHG 287
             L  ++  +       FG       +L   +            Q       ++E +   
Sbjct: 272 RTLVEQADVVEGCRAVGFGLGTPGLSELGLVEDVLADRAFVDDRQNSAAELGTLEDLTRD 331

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                   +   L   ++  A         +          R    L     T +D+S  
Sbjct: 332 GVAPAPHLVANALAAAALARAHGVQPAAIRAGLRAFRADPHRMETVLVADGITWVDDSKA 391

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP +  AA++   +I     G            G         +A+ L       V L 
Sbjct: 392 TNPHAAAAALTASDRIVWVAGGDLK---------GAEVDELVAAVADRLQA-----VVLL 437

Query: 408 GFHVLALKDALPRSIHVHYSETMD 431
           G     + +A+ R       + ++
Sbjct: 438 GKDARVIAEAVARHAPEVPVDHIE 461


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040773|gb|ACT57569.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 111/357 (31%), Gaps = 30/357 (8%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             I+++G+ GKTTT  ++   L   K     I     +              ++ + E  
Sbjct: 108 KSISVSGTHGKTTTTSLIAALLEQGKFDPTVINGGIINS---YGTNARIGTSEWIVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I V+T I P HL  +     I +A  +  + +   G   +  D
Sbjct: 165 ES-----DGTFIRLPSDIVVVTNIDPEHLDYYGDFNAIRAAFYKFIDNIPFYGFAVVCMD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----- 283
                 L A+     I    ++G+   AD +    ++ S +S  +V +QG   +      
Sbjct: 220 HPEVRSLIARIQNRKII---TYGRHPQADIRYSNIRKYSGRSIFDVSVQGNVTKDLTVIK 276

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQ 336
                 IG H   N   ++ +   L    +   K L+ F   + R             + 
Sbjct: 277 DLSLPLIGEHNISNACASIAVAYKLGLSSEDVKKGLASFSGIKRRFTLVGVWNDVHVFDD 336

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                I+ S             +++   PH   R   +          +      L   +
Sbjct: 337 YGHHPIEISSVLAAVRQICPRKIIAIHQPHRYSRLSTLFDQFSSCFGDADIV---LISPV 393

Query: 397 SLYNISHV--WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  +  + S   V  +K  L      +Y ++ D L   I +    GD ++   
Sbjct: 394 YSAGEKEIPGFSSPELVKNIK--LQGHPQAYYMDSFDHLVSKILAIAEPGDFIIFFG 448


>gi|290473427|ref|YP_003466293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
 gi|289172726|emb|CBJ79497.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Xenorhabdus bovienii SS-2004]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/364 (14%), Positives = 107/364 (29%), Gaps = 26/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGMLA---WILEACGYKPGFLIGGVPGNFDVSAQIGESPFFVIEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  +  +      +   +  +G I +  
Sbjct: 162 YDCAFFDKRSKFVHYGPRTLIMNNLEFDHADIFENLAAVQKQFHHLVRVVPGSGKILVPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + +        ++ +   G  +       K        +       +  EV    
Sbjct: 222 NDINLKHVIGMGCWSELEHVGETGNWQT------KKVSQDSSIYQVFHQSEQVGEVNWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N L+ +     +      A +         G     R  L           Y+
Sbjct: 276 VGEHNMHNGLIAIAAAHHVGVQPADACQ-------VLGDFINARRRLELRGEVNGISVYD 328

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
                  A +  L+ +     G    +   + E    +    +   ++         V+L
Sbjct: 329 DFAHHPTAILVTLAALRSKVGGVARIL--AVLEPRSNTMKMGMSKNDIAPSLGRADEVFL 386

Query: 407 SGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
               ++      +         +S  +D L   I  +   GD +++  SN  GF  +   
Sbjct: 387 YQPANIPWQVAEIAEHCIQPARWSADIDALVRMIVEAAQPGDYILI-MSNG-GFDGIHEK 444

Query: 464 LLEE 467
           LL E
Sbjct: 445 LLTE 448


>gi|296126835|ref|YP_003634087.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Brachyspira murdochii DSM 12563]
 gi|296018651|gb|ADG71888.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Brachyspira murdochii DSM 12563]
          Length = 346

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 58/201 (28%), Gaps = 17/201 (8%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+ + I    I       ++ +S I+   I        I     D + +I  A++ 
Sbjct: 1   MKLKDICKFINAQKIIGDENKDISSLSPIN--QITEGSI-VCI-----DNNKYIESALES 52

Query: 64  GAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            A  +++  +   +I           ++   A  KL        K  +    G++ KT  
Sbjct: 53  TANALILREETYNNIKDLKGKTAVIYNNPKEAFIKLLYFLFEDKKYPL----GTIEKTAV 108

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIFELGMSHLG--EIRFLT 179
            +      +            N  +G   +  A + +  D  I E  + +          
Sbjct: 109 IKENANIDADAYIGDNVHIGKNTSVGKGSVIEANVFLGDDVVIGENCIIYANAVIHDRCI 168

Query: 180 HLVRPHIAVITTIAPAHLSNF 200
              +  I   T I       F
Sbjct: 169 IKNKVIIGSSTVIGNDGFGFF 189


>gi|238761744|ref|ZP_04622718.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
 gi|238699858|gb|EEP92601.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia kristensenii ATCC
           33638]
          Length = 461

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M+T         Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGMVT--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +  TG I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVAVDASVYEVFLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A           +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       H+S  +D L   +  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 KLLN 447


>gi|82775498|ref|YP_401845.1| UDP-N-acetylmuramate--L-alanine ligase [Shigella dysenteriae Sd197]
 gi|309787233|ref|ZP_07681845.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
 gi|109892738|sp|Q32K01|MURC_SHIDS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|81239646|gb|ABB60356.1| UDP-N-acetyl-muramate:alanine ligase [Shigella dysenteriae Sd197]
 gi|308924811|gb|EFP70306.1| UDP-N-acetylmuramate--alanine ligase [Shigella dysenteriae 1617]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPIRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLAPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|113971900|ref|YP_735693.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-4]
 gi|113886584|gb|ABI40636.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-4]
          Length = 439

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 68/382 (17%), Positives = 122/382 (31%), Gaps = 48/382 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  V +   + I V G  DV     ++A       K  +I ITGS GK+T   ++ 
Sbjct: 76  IAIDTPEVRAALDMGIEVIG--DVELFAREIADR-----KPCVIGITGSNGKSTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L           +   +IG+P     +  + D  + EL    L      TH +    +
Sbjct: 129 EMLREAGMAV----AVGGNIGIPALDL-LTENADIFVLELSSFQL----ETTHSLNCVAS 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               +   H+  +S ++    AK  ++           +      E +            
Sbjct: 180 TCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG +     +          S +               IG H   N+L  + +V  + 
Sbjct: 230 NSFGLAPPEGDEWGICD-----SKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     K    F     R         +   T +++S   N  +  AA+  LS      
Sbjct: 285 VDKQVMAKVARTFTGLSHRC---EVVGVKAGVTYVNDSKATNVGATVAALDGLSDHL--- 338

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G   +  + S      L E L    ++H+   G     +      +I V   
Sbjct: 339 -GDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKIAALKEGAIKV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ++M             GD+V++
Sbjct: 388 DSMAAAVAKAAELATSGDIVLL 409


>gi|117922177|ref|YP_871369.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. ANA-3]
 gi|117614509|gb|ABK49963.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           ANA-3]
          Length = 439

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 122/382 (31%), Gaps = 48/382 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  V +   + I V G  DV     ++A       K  +I ITGS GK+T   ++ 
Sbjct: 76  IAIDTPEVRAALDMGIEVIG--DVELFAREIADR-----KPCVIGITGSNGKSTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L           +   +IG+P     +  + D  + EL    L      TH +    +
Sbjct: 129 EMLREAGMAV----AVGGNIGIPALDL-LTENADIFVLELSSFQL----ETTHSLNCVAS 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               +   H+  +S ++    AK  ++           +      E +            
Sbjct: 180 TCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG +     +          S +               IG H   N+L  + +V  + 
Sbjct: 230 NSFGLAPPEGDEWGICD-----SKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +     K    F     R         +   T +++S   N  +  AA+  LS      
Sbjct: 285 VEKQVMAKVARTFTGLSHRC---EVVGVKAGVTYVNDSKATNVGATVAALDGLSDHL--- 338

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G   +  + S      L E L    ++H+   G     +      +I V   
Sbjct: 339 -GDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKIAALKEGAIKV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ++M             GD+V++
Sbjct: 388 DSMAAAVAKAAELATSGDIVLL 409


>gi|304407502|ref|ZP_07389154.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
 gi|304343453|gb|EFM09295.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus curdlanolyticus
           YK9]
          Length = 444

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 74/406 (18%), Positives = 147/406 (36%), Gaps = 47/406 (11%)

Query: 63  KGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA LVV +T +            L+IPV         L++  + +RL +    +A+ G+
Sbjct: 46  KGADLVVYSTALSKDNVERKAAEELNIPV---------LHRAQMLSRLMNAGKGVAVAGA 96

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + + +                V +         ++ + E   S    ++
Sbjct: 97  HGKTTTSSMIALVMET---CKIDPTYIIGGEIVNVGTNAKAGKGEYVVAEADESDGSFLQ 153

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +      P IA++T I P HL N+     ++  A  +    ++  G   +  DD+  + +
Sbjct: 154 YH-----PTIAIVTNIEPDHLENYEGDFNKLKEAYVQFLHQVKPDGKAIVCIDDTNLQEM 208

Query: 236 KA--KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHM 292
               +  AL    I ++G  + A+++    +    + S++  +       V     G H 
Sbjct: 209 LPSLRGGALRNDQIVTYGIDQEANYRASDLQLGDRKVSFILHRDGETLGNVELSVPGRHN 268

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N + T+          ++  +A+ +F   + R       L +    L+ + Y  +P  
Sbjct: 269 VYNAMATIITCLEAGLSFESVAEAIRLFRGAKRRFH----VLGEKNDILVIDDYAHHPTE 324

Query: 353 MKAAISVLS--------QISPHGEGRRIAVLGDMCE-MGELSQSFHIDLAEVLSLYNISH 403
           ++A IS              P    R   +L       GE  +    D+        I  
Sbjct: 325 IQATISAAKATGKRIVAVFQPQRYTRTYFLLEQFSCAFGEADEVIITDIYSPAGEQQIE- 383

Query: 404 VWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               G H   L + +    + +  Y  T + +   + +S   GD++
Sbjct: 384 ----GVHSRKLVEMIVQNSNANTAYVPTKEEVLERLIASKKPGDLI 425


>gi|312970185|ref|ZP_07784367.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
 gi|310337683|gb|EFQ02794.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 1827-70]
          Length = 491

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 63/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A+IT
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIIT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQG 464


>gi|291530397|emb|CBK95982.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum 70/3]
          Length = 461

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 120/391 (30%), Gaps = 38/391 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +           L  L  +         + ++G+ GKTTT  M
Sbjct: 75  AAIMSDNPELIAAKASGVKTVE----RCELLGLVTSWYN----KAVCVSGTHGKTTTSSM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT    +     + +          +  +      D  + E       E       + P+
Sbjct: 127 LTHMYLAQNIDLSTVIGGKLK---AIGGSGRAGSSDVMVCEAC-----EFSNTFLHLFPN 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   HL  F  ++ + ++  +  +         L  +      ++A   +   K
Sbjct: 179 ISIILNIDADHLDFFKTMDNLRASFTKFCDNTTD----ILVVNGDDENTMRAVKASGFDK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +FGK+    +     K+ S+       ++  +               +   +   + 
Sbjct: 235 QIITFGKTDKNRYYPENIKRISDFQTDFDLMENGNKIERISIHVPGAHNVLNA-VAACAA 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA---------NPASMKAA 356
             A   T            G G+R+      G  T++D+  +             +M+  
Sbjct: 294 ALATGVTPENINKGLSTFWGAGRRFERLATIGGITVVDDYAHHPAEVAATLKTAKAMQDF 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             V +   P    R   ++ D     E++    +         N  +V+        L  
Sbjct: 354 KRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMGSREKNTYNVY-----SADLAA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +P      +  T + +  ++  +   GD++
Sbjct: 409 KIPG---CKWFPTFEEVARYVADNAESGDMI 436


>gi|224282639|ref|ZP_03645961.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313139797|ref|ZP_07801990.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
 gi|313132307|gb|EFR49924.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           bifidum NCIMB 41171]
          Length = 476

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 118/367 (32%), Gaps = 41/367 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  + ITG+ GKT+T EM +  L +       +     +IG  ++ A +  D D 
Sbjct: 96  RTGRPAPWVGITGTNGKTSTTEMTSAMLCADGLVAPAV----GNIGKAVSHAAVDPDNDA 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    GIE  A+ K+++F  + +   
Sbjct: 152 LCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRRALV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWM 272
              +          A +     +  ++ G               D          +++ +
Sbjct: 208 FNADDRRVSALASAAHTAEGCRRIGFTLGVPHPGQIGVDDGWIVDRSGVAGGAFGDETRL 267

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +   +      +  H+  + +  L +   +  D+D A+ AL  F P   R +    
Sbjct: 268 APVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAFAPGGHRIQTVAT 327

Query: 333 --ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G    ID+S   N  +        + +S       + + G + + G   +    
Sbjct: 328 AATGDGGSIRFIDDSKATNAHA------ARASLSSFAPKSVVWIAGGLAK-GSRFEQLVA 380

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---------GLFLFIQSSL 441
           D       + I    + G     + +A   S        ++                +  
Sbjct: 381 D-----QAHTIKAAVIIGKDQKPMLEAFAASAPGIPLTVIEPEPSDTVMARAVDAAGAYA 435

Query: 442 VDGDVVV 448
             GDVV+
Sbjct: 436 GTGDVVL 442


>gi|330973386|gb|EGH73452.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 486

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGHVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVYPAGEEPVPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|126461553|ref|YP_001042667.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
 gi|166224719|sp|A3PHS9|MURC_RHOS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|126103217|gb|ABN75895.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 470

 Score = 47.2 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 118/412 (28%), Gaps = 62/412 (15%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV     V  A   LA   R+RS    IAI G+
Sbjct: 76  ISSAIKKG-------NPELEEARLRGLPV-----VRRA-EMLAELMRMRSN---IAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L             N  +             ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDK---GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D +  + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFYDFVTNIPFYGLAVCCTDHAEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNA--DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
            +     I T     ++     + +        + +            +     G H   
Sbjct: 232 GRVTDRRIVTFGFNAQADVRAINLRYENGIAHFDVALQSEGAGHVIEGMSLPMPGDHNVS 291

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  + +   L    D   +AL+ F     R  +            I + Y  +P  + 
Sbjct: 292 NALAAVAVARHLGMKKDEIREALAAFGGVNRRFTKVGEVGG----VTIIDDYGHHPVEIA 347

Query: 355 AAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           A +    Q           PH   R  ++  D C                  +  I+ V+
Sbjct: 348 AVLKAARQAVKGRVIAVHQPHRYSRLHSLFDDFCTC-----------FNEADVVAIAEVY 396

Query: 406 LSGFHV----------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +G               L     R       E    L   ++     GD+V
Sbjct: 397 AAGEDPIPGAGRDDLVAGLIAHGHRHARAILCED--DLERLVREQARPGDMV 446


>gi|254786996|ref|YP_003074425.1| UDP-N-acetylmuramate--L-alanine ligase [Teredinibacter turnerae
           T7901]
 gi|259509783|sp|C5BP33|MURC_TERTT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|237685124|gb|ACR12388.1| UDP-N-acetylmuramate--alanine ligase [Teredinibacter turnerae
           T7901]
          Length = 473

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 68/395 (17%), Positives = 133/395 (33%), Gaps = 34/395 (8%)

Query: 68  VVVNTDMVASIGS--LSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTK 123
           VVVN+  V       L      +  V  A  L +L            IA+ G+ GKTTT 
Sbjct: 77  VVVNSSAVDEANPELLEARQQRIPVVRRAEMLGELMRYRHG------IAVAGTHGKTTTT 130

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ++    +   K    +     +               + + E   S    +      ++
Sbjct: 131 SLIASIFAEGDKDPTFVIGGLLNS---AGTNAALGASRYLVAEADESDASFLH-----LQ 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKA-EIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +AV+T I   H+  + G          E    L   G   +  DD     L       
Sbjct: 183 PMVAVVTNIDADHMDTYGGDFGTLKKTFVEFLHNLPFYGVAVMCGDDPVITSLIPDI--- 239

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMTLG 301
             +T+ ++G S++ DF+    KQ S +   +++       ++  +  G H   N    + 
Sbjct: 240 -ARTVITYGFSEDCDFKAYDVKQESGKQRFKIKRPEGEPLDIYLNMPGQHNVLNATAAVA 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQGFFTLIDESYNANPASMKAAISVL 360
           + +    D     + L+ F     R + Y    L QG   ++ + Y  +P  + A I  +
Sbjct: 299 VATDEGIDDIAIQQGLAQFMGVGRRFQIYGDYPLPQGGSVMLVDDYGHHPREVAATIRAV 358

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--L 418
               P      +                 +++   +    +  V+ +G   +   D   L
Sbjct: 359 RDSWPDR-RLFMVYQPHRYTRTRDLYEDFVEVLSSVDQLVLLEVYAAGEEPIPGADGRHL 417

Query: 419 PRSIHVH------YSETMDGLFLFIQSSLVDGDVV 447
            R+I         + E ++G+   ++  +  GD++
Sbjct: 418 SRTIRTRGLVDPIFVEGIEGVPAVVKDLVKPGDII 452


>gi|329940944|ref|ZP_08290224.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
 gi|329300238|gb|EGG44136.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           griseoaurantiacus M045]
          Length = 489

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 90/325 (27%), Gaps = 39/325 (12%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D    EL    L         +R H A +  +AP HL     +E  A+ K  ++EG   
Sbjct: 179 YDVLAVELSSYQLHWA----PSLRVHSAAVLNLAPDHLDWHGSMEAYAADKGRVYEGNRI 234

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
               +   D +  +L++      G + +     +              +++++E + +  
Sbjct: 235 ACV-YNMADKATEDLVREADVEEGCRAVGFTLGTPGPSQLGVVDGLLVDRAFVEDRQKNA 293

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   +      N+   L   ++  A    A               R     +    
Sbjct: 294 QELAEVSDVNPPAPHNIANALAAAALARAYGVPAKAVRDGLRAFTPDAHRIAHVADVDGV 353

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             ID+S   N  + +A+++    I     G       D    G              +  
Sbjct: 354 AYIDDSKATNTHATQASLAAYESIVWIAGGLAKGATFDELVAG--------------AAG 399

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVVV-- 449
            +    L G     +++AL R         +D              +     GD V++  
Sbjct: 400 RLRGAVLIGADRALIREALARHAPEVPVVDLDRTDTGAMRAAVAEARKLARPGDTVLLAP 459

Query: 450 -KSS---------NSCGFYRLINLL 464
             +S             F   +  L
Sbjct: 460 ACASMDMFTNYNKRGDAFAEAVREL 484


>gi|225388505|ref|ZP_03758229.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
 gi|225045436|gb|EEG55682.1| hypothetical protein CLOSTASPAR_02241 [Clostridium asparagiforme
           DSM 15981]
          Length = 462

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/376 (14%), Positives = 109/376 (28%), Gaps = 31/376 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++    +       IAI+G+ GKTTT  M+   L +                    
Sbjct: 104 EFLGEMMRNYKQS-----IAISGTHGKTTTTSMVAEMLLAGDMDPTVSVGGILKD----- 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  +L ++   E         P + V+  I   HL  F  +E+I  +   
Sbjct: 154 ---IGGNIRVGSPDLFVTEACEYTNSFLSFYPTLEVVLNIEADHLDFFKDLEDIRHSFRL 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + L + G + +N      + +            +      +   Q   + + +  S+ 
Sbjct: 211 FAQKLPQDGLLVINSGIENLQQITD--GLKCRIVTFGSSPDSHYTAQNITYDEFARPSYD 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +        V     G H   N L  + +V  L    +  +  L  F   + R ++   
Sbjct: 269 LIVQGKLVNRVSLGVTGEHNVYNSLAAIAVVMELGVGFEAIMAGLKNFSGTDRRFEKKGE 328

Query: 333 ALNQGFFTLIDES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                                  A       +     PH   R  A L    E    +  
Sbjct: 329 IGGVTIIDDYAHHPQEIKATLAAAKNYPHRKLWCVFQPHTYTRTKAFLDQFAETLAAADE 388

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             +         +       G     +   +      VH+  + D +  FI  + ++GD 
Sbjct: 389 VILADIYAARETD-----TLGVSSADIARKIQELGTPVHFIPSFDEIETFILENCMNGD- 442

Query: 447 VVVKSSNSCGFYRLIN 462
           +++      G   ++ 
Sbjct: 443 LLIT----MGAGDIVK 454


>gi|90418193|ref|ZP_01226105.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337865|gb|EAS51516.1| UDP-N-acetylmuramate-alanine ligase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 475

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 70/397 (17%), Positives = 129/397 (32%), Gaps = 33/397 (8%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VVV+T +  S   L+     +  ++     LA   R R     IAI G+ GKTTT  
Sbjct: 67  AEVVVVSTAIKRSNPELAAARERLLPIVRRAEMLAELMRFRHA---IAIGGTHGKTTTTS 123

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   L + +     +     +            + ++ + E   S           +  
Sbjct: 124 MVATLLDAGELDPTVVNGGIIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPA 175

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P HL ++   +++  A     E +   G   +  D    + L ++      
Sbjct: 176 DIAVVTNIDPEHLDHYGTFDKVREAFCAFVENVPFYGFGVMCLDHPEVQALVSRIEDR-- 233

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNML 297
             I ++G++  AD +       + +S  ++ ++ +                G H   N  
Sbjct: 234 -RIITYGENLQADVRFENVSFTAGKSHFDISIRDRVKGTTERIDGLVLPMPGRHNVSNAT 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPAS 352
             + +   L    D   K L+ F   + R            +              + A 
Sbjct: 293 AAIAVAHRLNISADAIRKGLAGFGGVKRRFTLTGVVGEVAIYDDYGHHPVEIRAALSAAR 352

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
             A+  V++ + PH   R  A+  D       + +  I          I  V        
Sbjct: 353 SSASGRVIAVVQPHRYSRLQALFADFAACFNDADTVIIAPVYAAGEEPIDFV-----SSE 407

Query: 413 ALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            L + L    H      +  + L   I +    GD+V
Sbjct: 408 ILVERLKLGGHRDARLIDGPEELAPLIHNLAEPGDMV 444


>gi|301630397|ref|XP_002944308.1| PREDICTED: UDP-N-acetylmuramoylalanine--D-glutamate ligase-like
           [Xenopus (Silurana) tropicalis]
          Length = 576

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 98/365 (26%), Gaps = 16/365 (4%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPL 151
            AL+ L           ++A+TG+ GKTT   +    L    ++ A  G+     +    
Sbjct: 179 QALHALHTQH--GYAPVVLAVTGTNGKTTVTALTGQLLQHAGRSVAVAGNIGPTLLDTLA 236

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    +  + EL    L  +        P  AV+  +   HL     +    +AKA
Sbjct: 237 ARIAAQNLPEVWVLELSSFQLDGVH----GFEPTAAVVLNLTQDHLDWHGDMAAYGAAKA 292

Query: 212 EIFEGLEKTGTIFLN--YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            IF           +           + K      +T  +FG +          +  +  
Sbjct: 293 HIFGQHALMVLNREDPAVMQMLPAPARVKLQKPQSRTHVTFGGTLPQRPGDFGIETVNGM 352

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
            W+    Q  +           +    LM    + I          A        G    
Sbjct: 353 VWLVRAHQADATAKRTRLHEEPLHLQRLMPADALRIRGRHNACNALAALALAQAAGCALG 412

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM-----GEL 384
                 + +        +                +       +A LG    +     G+ 
Sbjct: 413 AMLHGLRAYRGEPHRVESVGIVGGVEYFDDSKGTNVGATVAALAGLGLERRLVLILGGDG 472

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVD 443
                  LA  ++  ++    L G     L  AL    + +  + +M+       +    
Sbjct: 473 KGQDFAPLATPMAR-HVRAAVLIGRDAAQLGAALQDTGVPLLRAASMEDAVQQAAAQAQS 531

Query: 444 GDVVV 448
           GD V+
Sbjct: 532 GDAVL 536


>gi|238917838|ref|YP_002931355.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
 gi|259509770|sp|C4Z4L9|MURC_EUBE2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|238873198|gb|ACR72908.1| UDP-N-acetylmuramate--alanine ligase [Eubacterium eligens ATCC
           27750]
          Length = 459

 Score = 47.2 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 53/393 (13%), Positives = 114/393 (29%), Gaps = 37/393 (9%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +     +     +P+          L ++    +       I I G+ GKTTT 
Sbjct: 76  TAAIHPDNPEFKAAKEAGLPML----TRAELLGQIMTVYKNA-----INIAGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L +             +    +         ++ + E       E         
Sbjct: 127 SMVSEILLAASMDPTISVGGILNS---IGGNTRVGGDNYFVAEAC-----EYTNSFLSFN 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + +I  +   HL  F  I++I  +     E L   GT+ +N D   +E      +   
Sbjct: 179 PTMNIILNVKEDHLDFFKDIDDIRHSFKLFTEKLPSDGTLIINTDIDNYEYF----YQDT 234

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +FG                E       L     +     +G     N+  +L  +
Sbjct: 235 DCEVITFGSDPAKSMYSASDIAYDELGRCTYSLLINGEKADTITLGVPGLHNVYNSLAAI 294

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKA 355
           +             +     +G  +R+         T+ID+  +         + A+   
Sbjct: 295 AATRKLSVDMEHIKAGLSNFKGTNRRFEKKGTFNGVTVIDDYAHHPDEIRATLSSAAHYP 354

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
              V     PH   R   +  +  +        H D   +  +Y        G     L 
Sbjct: 355 HNRVWVVFQPHTYSRTKLLFNEFAD-----ALSHADKVVLAKIYAARETDTLGISSADLC 409

Query: 416 DALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + +        Y +  + +  ++  + ++GD++
Sbjct: 410 EKIKSLGKECVYIDNFEDIEKYLLKNCINGDLL 442


>gi|238787571|ref|ZP_04631369.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
 gi|238724358|gb|EEQ16000.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia frederiksenii ATCC
           33641]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 110/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M+          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMVA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVLLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A         +    +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADAC----RVLGEFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAHWSADIDTLVEMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 KLLA 447


>gi|254246379|ref|ZP_04939700.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia PC184]
 gi|124871155|gb|EAY62871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia cenocepacia PC184]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 117/369 (31%), Gaps = 31/369 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML   L          G     + +   ++    D  F + E   
Sbjct: 136 VLAVAGTHGKTTTSSMLAWLLEDAGLN---PGFLIGGVPLNFGVSARLTDSSFFVIEADE 192

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +  +     S I   +   +     +   G I  N 
Sbjct: 193 YDTAFFDKRSKFVHYRPRTAVLNNLD-SITPTSSPILPRSKRNSSSGAHVPGVGRIVTNG 251

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E + A+     ++    FG          +     ++ +      G+  EV    
Sbjct: 252 RSDALERVLARGCWSEVER---FGVDGGWQALPAEDGVPVDERFAVYSHAGRVGEVAWQV 308

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A ++L+ F   + R +             + + + 
Sbjct: 309 QGDHNRMNALAAIAAARHVGVPPAQAAESLASFRNVKRRME----VRGSVDGVTVYDDFA 364

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHV 404
            +P ++   I+ L         R +AVL         S +  + + +     SL +   V
Sbjct: 365 HHPTAIDTTIAGLRARIGRQNARILAVL------EPRSNTMKLGVMKSQLPASLADADLV 418

Query: 405 WLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           +  G           L +AL          + +  L   +  +   GD V+V  SN  GF
Sbjct: 419 FGYGAPTGRDALGWNLAEALAPLGDRARAFDDLHLLVKAVVEAARPGDHVLV-MSNG-GF 476

Query: 458 YRLINLLLE 466
             +   LL+
Sbjct: 477 GGVHQKLLD 485


>gi|261854928|ref|YP_003262211.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
 gi|261835397|gb|ACX95164.1| UDP-N-acetylmuramate [Halothiobacillus neapolitanus c2]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 103/365 (28%), Gaps = 31/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ + G+ GKTTT  ML   L                 G     AR+  +  F + E   
Sbjct: 104 VLGVAGTHGKTTTSSMLAWILEQAGMAP--GFLIGGVPGNFGVSARLG-ETPFFVIEADE 160

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP   ++  +   H   F  +  I    A     +   G + +  
Sbjct: 161 YDTAFFDKRSKFLHYRPRGVILNNLEFDHADIFPDLAAIERQFAHFLRLVPNKGLVVMAD 220

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                E +  +     I+                  +                 ++  + 
Sbjct: 221 ATPALERVVEQGCWSPIERFG----------ARDSAQPWRLVGEAIWLEGQHLGDMPANI 270

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N L  L +        +  + AL+ F     R +             + + + 
Sbjct: 271 IGRHNRLNALAALALARFAGVPPEQGLNALAGFVGVARRLQNRGTVAG----VTVFDDFA 326

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWL 406
            +P ++   I+ L +           +         +    H   LAE L+      V  
Sbjct: 327 HHPTAIIETIAALREQQSASPHSGRLIAVVDPRSNTMRAGVHQHQLAEALA--GADLVVF 384

Query: 407 -----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 G+       +L     + +S T+D +   + +     D ++V  SN   F  + 
Sbjct: 385 HSPANLGWSPREALASL--GTRIRFSPTVDAVLTDVLALAQPDDKILV-MSNGS-FDGVH 440

Query: 462 NLLLE 466
             LL+
Sbjct: 441 QRLLD 445


>gi|167586018|ref|ZP_02378406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           ubonensis Bu]
          Length = 503

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 71/298 (23%), Gaps = 14/298 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           P  A I  I   HL      +  A+AK  IF      
Sbjct: 176 DVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDWHGSFDAYAAAKGRIFGATTTR 231

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ--LRKWKQCSEQSWMEVQLQG 278
                +     F      + A    T          D+            ++        
Sbjct: 232 VLNRDDAAVMKFAPAAGAADAPRTITFGLNEPVHEGDYGLLRDNGIAWLVEAIDRDATDE 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +          H        L     L                           L  G 
Sbjct: 292 PATGRRRRRDAVHTPDIAQKRLMPADALRIRGLHNAANALAAFALARAIDLPAALLLHGL 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDL 392
                E++     +    +  +        G  +A L  + +       G+        L
Sbjct: 352 REYRGEAHRVELIATLDDVDYVDDSKGTNVGATVAALDGLAQRIVLIAGGDGKGQDFSPL 411

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A  ++ +    V L G    A++DAL    + +    T++            GD V++
Sbjct: 412 AAPVARW-CRAVLLIGRDAPAIRDALADTGVPLVDHATLEAAVRAASELAEPGDAVLL 468


>gi|317402636|gb|EFV83195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Achromobacter xylosoxidans C54]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 101/378 (26%), Gaps = 39/378 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+ G+ GKTTT  ML   L +       +             AR        + 
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFLIGGVAPD--LHVSARYDPARRPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  AV+  +   H   F  +  I +    +   +  +G I
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTIPASGRI 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    + + A+         +S   +  AD   +     ++ ++           V
Sbjct: 219 IRPAHSDALDRVIARGC-------WSETVTFGADGAWQADAPDADGAFEVRCNGAAVGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFT 340
                G H   N L  L             + ALS F   + R +             F 
Sbjct: 272 RWALGGEHNRMNALAALAAAEHAGVPAAEGVAALSRFGGVKRRMELRGTVNGVKVYDDFA 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M      S            L +
Sbjct: 332 HHPTAIATTVQGLRRQVGPARILAVLEPRSNTMKLGAMAARLPDS------------LRD 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G                 P        + +D L   +  +   GD V+V  SN
Sbjct: 380 ADLVFCFGARAGKHALGWNPAEVLAPLGDRASSYDDIDALVAAVVQAARPGDQVLV-MSN 438

Query: 454 SCGF----YRLINLLLEE 467
             GF     +L+  L   
Sbjct: 439 G-GFGGIHGKLLTALEAR 455


>gi|300780833|ref|ZP_07090687.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
 gi|300532540|gb|EFK53601.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium genitalium
           ATCC 33030]
          Length = 465

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 126/407 (30%), Gaps = 39/407 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +       IPV    D    L +L          T +   G+ GKT+T  M  +AL
Sbjct: 82  DNPELVGAAEHGIPVIRRSD---LLGELMEGY------TQMLFAGTHGKTSTTSMAVVAL 132

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +  +  +       +                 + E   S    +R+     RP IAVIT
Sbjct: 133 QAAGEDPSFAIGGQLNR---AGTNAHHGSGAVFVAEADESDGSLLRY-----RPDIAVIT 184

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  F   E       +  + +  TGT+ +  DD        ++   G+  +   
Sbjct: 185 NIEPDHLDYFGDAETYYKVFDDFADRITDTGTLIVCLDDESAAECGVRALERGVTVVGYG 244

Query: 251 GKSKNADF---QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +  +      +  W+  ++ S ++V L G  M       G HM  N +  L       
Sbjct: 245 TMTHPSIPNAAHVVDWRTENDLSVVKVNLNGTEMTYHLSIPGKHMVLNSVAALVAGVTAG 304

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS------ 361
           AD     + LS F     R             T + + Y  +P  + A +          
Sbjct: 305 ADPFALAEGLSGFTGVRRRF---ELRGELSDGTRVYDDYAHHPTEVDAVLKAAKGTGARV 361

Query: 362 --QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
                PH   R     G+  +   L+ +  +          +      G     + D + 
Sbjct: 362 VVCFQPHLYSRTQEFAGEFADALSLADAAVVLDIFGARETPVE-----GLDSRIITDHMS 416

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF--YRLINLL 464
               V Y          +   +  GD+V+   + S       +++ L
Sbjct: 417 -ITDVVYEPNFSAAPAAVAKLVRPGDLVLTMGAGSVTMLADPILDAL 462


>gi|254411000|ref|ZP_05024778.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
 gi|196182355|gb|EDX77341.1| UDP-N-acetylmuramate--alanine ligase [Microcoleus chthonoplastes
           PCC 7420]
          Length = 512

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 130/421 (30%), Gaps = 54/421 (12%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ ++ +        +      P+F   D+L AL +     R       IA+ G+ GKTT
Sbjct: 115 VICSSAINPINSEYKAAVEGGYPIFHRSDLLAALMQ---DYRS------IAVAGTHGKTT 165

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         +                     F + E   S           
Sbjct: 166 TSSLMGYLLLKTGLDPTIVVGGEVD---AWQGNARLGKSPFLVAEADES-----DGSLAK 217

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           + P I VIT I   H  ++  ++++        +         +        L    +  
Sbjct: 218 LAPEIGVITNIELDHPDHYQNLDQVIETFKIFADR-----CQTIVGCIDCQTLRSHFTPT 272

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +      + G   + D  + + +     +    +       +    +G H   N L  + 
Sbjct: 273 ISYSLQRTAGADYSVDRIVYQAE---GITARIWEGDQVLGTLQLSLLGQHNLSNALAVVA 329

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV-- 359
           +   L  + D    AL+ F   + R +       +       + Y  +P+ ++A ++   
Sbjct: 330 VGRHLGLEFDAIASALATFEGAKRRFE----VRGECKGITFVDDYAHHPSEIQATLAAAR 385

Query: 360 ---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                    ++   PH   R +  L D  +    +    +          +  +  +G  
Sbjct: 386 LQVELSRRIVAIFQPHRYSRTLTFLSDFAKSFGDADLVVVTDIYSAGEAGVGQI--TGEQ 443

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV-VVVKSSNSCGFYRLINLLLEEFP 469
           V            V+Y  T+D +   +   L  GD+ + + + N     ++I  ++E + 
Sbjct: 444 VR--AAIADHHERVYYQPTLDEVSQLLAQILQPGDLAIFLGAGN---LNQIIPQVIESYQ 498

Query: 470 A 470
            
Sbjct: 499 T 499


>gi|33603367|ref|NP_890927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella bronchiseptica
           RB50]
 gi|33577491|emb|CAE34756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 103/375 (27%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+ G+ GKTTT  ML   L   ++    +             AR        + 
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPD--LQVSARYAPGARPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F  +  I +    +   +   G +
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D    E +  +     +      G+ +             + ++        +  V
Sbjct: 219 VLPTDAPALERVLERGCWTPVARFGPGGQWQAGP-------ADEQGAFEVSVDGRDAGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  L             I+ALS F   + R +          +    
Sbjct: 272 RWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFA 331

Query: 344 E---SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M                  +L  
Sbjct: 332 HHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPE------------ALAG 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G H               P        + +  L   + ++   GD V+V  SN
Sbjct: 380 ADLVFCFGDHAGKHALGWDPARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLV-MSN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGVHGKLLDAL 452


>gi|332981725|ref|YP_004463166.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
 gi|332699403|gb|AEE96344.1| cyanophycin synthetase [Mahella australiensis 50-1 BON]
          Length = 879

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 73/446 (16%), Positives = 140/446 (31%), Gaps = 55/446 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVD-DVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           G    ++  +    I     P  G   +   A+  +      RS   I+++TGS GKTTT
Sbjct: 435 GVNGAIIEINAAPGIRMHHYPYKGKPRNAAKAIIDMLYPQGQRSSIPIVSVTGSNGKTTT 494

Query: 123 KEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
             ++   L +                  CI   +        +      V+  + E    
Sbjct: 495 VRIIAHMLRTQGLNVGMTTTGGIYINDECIMKGDTTGPASAQIILSDKSVEAAVLETA-- 552

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
             G IR         + VIT I   H  +     +E++   K+ I E ++  G   LN D
Sbjct: 553 RGGIIRSGLGYDLSDVGVITNITGDHLGIDGIHTLEDMLHVKSLIVEAVKDNGYAVLNAD 612

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLR---------KWKQCSEQSWMEVQLQGK 279
           D+       +     I   ++                      +    +   +   +   
Sbjct: 613 DAISVQAARRVRCNLIYFSFNQNNILIQHQIDNGRPAVYLKDDYIVLFDGENIYNVIAVD 672

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
            +     G   +  +N +  +     +   V    KAL  F+    +        N   F
Sbjct: 673 EIPATWEGKLTYNIENSMAAVAAGYGIKVPVSVMEKALRTFYSDSLQNPGRFNIFNVRDF 732

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +I + Y  N  S K+ IS L Q++P        ++G +   G+      I++   ++ Y
Sbjct: 733 RVIVD-YAHNVESYKSVISALKQMNPAR------LIGVIGAPGDRRDEDIIEMGR-IAGY 784

Query: 400 NISHVWL----------SGFHVLALKDAL------PRSIHVHYSETMDGLFLFIQSSLVD 443
               + +          +G     L+           S+++  SET              
Sbjct: 785 GFDRIIIKEDIELRGRQTGEVSRLLQQGALRAGMPKSSMNIILSET--DAISAAMGQAQP 842

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFP 469
           GD+V+V          +++ + +  P
Sbjct: 843 GDIVIVF---YERLEPILDAIKKASP 865


>gi|282878010|ref|ZP_06286818.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
 gi|281299845|gb|EFA92206.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella buccalis ATCC
           35310]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 98/354 (27%), Gaps = 43/354 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHVDCNAFLGGISKN--YGTNYILSDASDYIVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +       ++  G + ++ D  
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTTLIQPGGALIIHRDLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               ++         ++Y + + K          +    ++  +        V       
Sbjct: 228 MKPAVQE------GVSMYDYSRDKGDFHAENIEIKNGHITFDFISPLENVEGVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +     +S +H  E R             +          
Sbjct: 282 INIENGVAAMAMAQLNGCTAEELRYGMSTYHGVERRFDFKIKNDRHVLLSDYAHHPKEIY 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +          +          +   ++ F+ + A+ LS   +  V L    
Sbjct: 342 QSAKSLRELYHDRKVTAIFQPH--------LYTRTRDFYKEFAKALSQ--LDEVILCDIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------SLVDGDV 446
                   G     + D L            + +   ++         L  GD+
Sbjct: 392 PAREQPIKGVTSQLIYDELTCKEKSMIH--KEEVLDLVKRRDFDVLVILGAGDL 443


>gi|257460332|ref|ZP_05625433.1| ferrochelatase [Campylobacter gracilis RM3268]
 gi|257441663|gb|EEV16805.1| ferrochelatase [Campylobacter gracilis RM3268]
          Length = 329

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 4  LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +    +L + + G  +       V   +I+   +A + AF A+ G +      +  A+  
Sbjct: 1  MVNLLNLTRIVNGTMLNNPAISAVESFAIEPAKVAKKSAFIAL-GAN---ERDVRTAIDN 56

Query: 64 GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          GA  ++ + +      +  I    V+++  AL +L
Sbjct: 57 GAYAIIFDNNF--KPLNDEIAFIKVENLCSALVRL 89


>gi|15965928|ref|NP_386281.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium meliloti
           1021]
 gi|307308238|ref|ZP_07587947.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
 gi|307319705|ref|ZP_07599130.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|23821882|sp|Q92NM0|MURC_RHIME RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|15075197|emb|CAC46754.1| Probable UDP-N-acetylmuramate--alanine ligase [Sinorhizobium
           meliloti 1021]
 gi|306894636|gb|EFN25397.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti AK83]
 gi|306901236|gb|EFN31842.1| UDP-N-acetylmuramate/alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 471

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 135/420 (32%), Gaps = 53/420 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VVV+T +      L         V  V  A   LA   R R   
Sbjct: 58  GHK----AENLGDAEVVVVSTAIKKDNPELIAAREKFLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  M+   L +       I     +              ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSMVAALLDAGGLDPTVINGGIIN---AYGTNARMGAGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   IAV+T I P HL ++   + + +A  +  E +   G   L  D
Sbjct: 165 ES-----DGTFLKLPADIAVVTNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVLCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------M 281
               + +  K     +    ++G++  AD +    +     S  +++++ +         
Sbjct: 220 HPEVQSMVGKIEDRKVV---TYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIK 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++     G H   N    + +   L    +   + L+ F   + R               
Sbjct: 277 DLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGLATFGGVKRRFTLTGEWNGAR---- 332

Query: 342 IDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  ++             +++   PH   R  ++  D       + +  +  
Sbjct: 333 IFDDYGHHPVEIRAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFTSCFNDADTILLAP 392

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
                   I      G    AL D +  + H    +    + L   I      GD VV++
Sbjct: 393 VYAAGEEAIE-----GVSSEALVDRIKAAGHRDARHVPGQEALAPVIAKIAQPGDFVVLL 447


>gi|301384719|ref|ZP_07233137.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tomato Max13]
          Length = 486

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H+  +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMVTYGGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVRDILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S+++D +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTMTYGFSEDSDVRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGHVMLVDDYGHHPREVAAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLAEANVLLLMEVYPAGEEPVPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|227822650|ref|YP_002826622.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
 gi|254766017|sp|C3MEM8|MURC_RHISN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|227341651|gb|ACP25869.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium fredii
           NGR234]
          Length = 469

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 136/420 (32%), Gaps = 53/420 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VVV+T +      L         V  V  A   LA   R R   
Sbjct: 58  GHK----AENLGDAEVVVVSTAIKKDNPELIAAREKFLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  M+   L +       I     +              ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSMVAALLDAGGLDPTVINGGIIN---AYGTNARMGAGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   IAV+T I P HL ++   + + +A  +  E +   G   L  D
Sbjct: 165 ES-----DGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV----- 283
               + +  K     +    ++G++  AD +    +     S  +V+++ +         
Sbjct: 220 HPEVQSMVGKIEDRKVI---TYGENPQADVRYHNVRMDGATSVFDVEIRRRRTGQVIQLN 276

Query: 284 --VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N    + +   L  + +   K L+ F   + R               
Sbjct: 277 GLRLPMPGRHNVSNATAAVAVAQRLGMEPEAIAKGLASFGGVKRRFTLTGEWNGAS---- 332

Query: 342 IDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  +K             +++   PH   R  ++  D       + +  I  
Sbjct: 333 IFDDYGHHPVEIKAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFSACFNDADTILIAP 392

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
                   I      G +  AL +++  + H    +    + L   +      GD VV++
Sbjct: 393 VYAAGEDAID-----GVNSQALVNSIKAAGHRDAQFLTGPEALAPVVSKIAQPGDFVVLL 447


>gi|325856498|ref|ZP_08172187.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
 gi|325483467|gb|EGC86440.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola CRIS 18C-A]
          Length = 458

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 103/352 (29%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    DF + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKN--YGTNYILSDRSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++K G + L+    
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALILHKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + ++              G     + ++       +       ++    +V       
Sbjct: 228 MKQHVQEGVKVYEYSRND--GDFHAENVRIADGTITFDFISPIENVK----DVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +   + +  +   + R           F +          
Sbjct: 282 INIENGIAAMAMAQLNGCTANELRRGMKTYGGVDRRFDFKIKNSRHVFLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +          +          +   ++ F+ D A  L   +   V L+   
Sbjct: 342 QSAKSLKELYPDRKVTVIFQPH--------LYSRTRDFYKDFAGAL--SHFDEVILTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L   +     +  D +  F++S   D DV+VV  
Sbjct: 392 PAREEPIPGVTSSLIYDNLRPGVEKQMIK-KDDVLDFVRS--RDFDVLVVLG 440


>gi|304404008|ref|ZP_07385670.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346986|gb|EFM12818.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Paenibacillus
           curdlanolyticus YK9]
          Length = 489

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 111/374 (29%), Gaps = 45/374 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L S A II ITGS GKTTT   +   L +             +IG PL  A    D   
Sbjct: 107 YLLSPAPIIGITGSNGKTTTTTWIGELLQAAGLR----PIVAGNIGTPLCEAAQEADASH 162

Query: 163 -GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T   RPH+A++  +   HL    G+E+  ++KA++F       
Sbjct: 163 TLVAELSSFQL----KGTTSFRPHVALLLNVVETHLDYHGGMEDYVASKAKLFANQTADD 218

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN+DD+    +  +  +  +    +    K    +   ++   +Q            
Sbjct: 219 IAVLNWDDAICRTIAEQLESQLLPFSLTQRLDKGLYIEPP-YEVEPDQPEHSAAGASAGD 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIV-----------------SILTADVDTAIKALSVFHPKE 324
             +   +   + ++      +V                     A    +  ++       
Sbjct: 278 GALAAPMRNVVYRDAQGAETVVIPVDELGIPGKHNAANAMAAIAAAIASGASIESLQAPL 337

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
              +     L           YN +        + +  +      R + + G     G  
Sbjct: 338 REFRGVEHRLEYVCERNGVTYYNNS--KATNPAATIVGLKSFPLDRIVLIAG-----GLD 390

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSE-------TMDGLFL 435
             S +++L           V   G     L     L     V   E       T+     
Sbjct: 391 RGSDYMELLPWFEQLK--AVVSLGETRGKLAHVAKLAGLTAVETVEPEGDAEATLQEAVR 448

Query: 436 FIQSSLVDGDVVVV 449
              +    GDVV++
Sbjct: 449 RASALAESGDVVLL 462


>gi|238783538|ref|ZP_04627560.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
 gi|238715593|gb|EEQ07583.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia bercovieri ATCC 43970]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M+T         Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGMVT--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +   G I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVFLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A              +R      +    ++ + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADAC----RVLGDFINARRRLELRGEAHGVMVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       H+S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|261414976|ref|YP_003248659.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371432|gb|ACX74177.1| UDP-N-acetylmuramate/alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325875|gb|ADL25076.1| UDP-N-acetylmuramate--L-alanine ligase [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 460

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/397 (13%), Positives = 116/397 (29%), Gaps = 49/397 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +   +    +  IPV        A  L +L            ++I G+ GKTTT  ++  
Sbjct: 81  DNPELVEARARRIPVI-----RRAEMLGELMRLKY------TLSIAGTHGKTTTTSIVGA 129

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
                      I                    D+ I E       E       + P  A+
Sbjct: 130 IWEEAGLDPTIIVGGIVKG---KCSGAKVGHGDYLIAESD-----EFDRSFLSMMPSSAI 181

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           IT I   HL  +  I+ I  A  +    +   G + +  DD   + + +      I    
Sbjct: 182 ITNIDADHLDTYENIDAIKDAFTQFANKIPFYGQVIVCLDDPNVQQILSHLKKPVI---- 237

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++G ++ A +++            E+    KS  +      G H   N    + +     
Sbjct: 238 TYGFTRQAKYRVENLVFVKGYPQFEIVCDVKSLGQFKLQIPGRHNVLNATAAVALAVEEG 297

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             ++ A KA++ F   + R         +    + D+  +    +    +          
Sbjct: 298 ISIEVARKAVAAFEGVKRRF---EFIGEKNGVMVFDDYAHHPTEATATLLGFREAFPDKR 354

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLALKD 416
                 ++     +   ++  H       +  N   + ++           G     + +
Sbjct: 355 -----IIVAFQPHLFTRTRDQHEAFGS--AFSNCDVLLVTDIYPSREKPIEGVTGAMVAN 407

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     H    +   ++ L    +  L   DV+V+  
Sbjct: 408 SAADRGHRDARFIGDVNNLIPVCKELLKPNDVIVLMG 444


>gi|254464869|ref|ZP_05078280.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
 gi|206685777|gb|EDZ46259.1| UDP-N-acetylmuramate--alanine ligase [Rhodobacterales bacterium
           Y4I]
          Length = 465

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 69/423 (16%), Positives = 125/423 (29%), Gaps = 54/423 (12%)

Query: 42  AFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            F   K  +      +  A    A +V+ +     +       + G+  V  A + LA  
Sbjct: 59  IFVGQKAEN------LEEA----AVVVISSAIKPGNPELDEARLRGLPVVRRA-DMLAEL 107

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            RL+S    +AI G+ GKTTT  M+   + +           N  I             +
Sbjct: 108 MRLKSN---VAIAGTHGKTTTTTMMAELMVA---GGFDPTIVNGGIIHAYGSNARMGQGE 161

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S         + +   IAV+T I P H+ ++   + +     E    +   G
Sbjct: 162 WMVVEADES-----DGSFNRLPATIAVVTNIDPEHMEHWGDFDRLRDGFLEFVSNIPFYG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                 D +  + L  +     + T     ++      L      +    +         
Sbjct: 217 IAVCCTDHAEVQALVGRISDRRVVTYGFNAQADVRAVNLTYKAGVAHFDVVLQAEDRVIE 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  + +   L  +     +AL+ F     R       + +     
Sbjct: 277 GCTLPMPGDHNVSNALSAVAVARHLGMNSTEIREALAAFGGVNRRFT----KVGEVNGVT 332

Query: 342 IDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  +              V++   PH   R   +  D C             
Sbjct: 333 IIDDYGHHPVEIAAVLKAARQACEGRVIAVHQPHRYSRLSNLFEDFCAC----------- 381

Query: 393 AEVLSLYNISHVWLSGFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDG 444
                +  I+ V+ +G           L   L R  H H       + L   ++     G
Sbjct: 382 FNEADVVAIAEVFSAGEDPIEGASRDDLVAGLIRHGHRHARALLNEEDLERLVREQARPG 441

Query: 445 DVV 447
           D+V
Sbjct: 442 DMV 444


>gi|94987547|ref|YP_595480.1| UDP-N-acetylmuramate--L-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|166224699|sp|Q1MPB8|MURC_LAWIP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94731796|emb|CAJ55159.1| UDP-N-acetylmuramate-alanine ligase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 85/272 (31%), Gaps = 17/272 (6%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I V+T I   HL  +   EEI  A       +   G   +  DD   + +  + +   
Sbjct: 173 PIINVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVVCGDDPGVQRVLPRVNRQV 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I    ++G   +        +      +  +       EV+    G H   N L  +G+ 
Sbjct: 233 I----TYGFESSNHIWAEIIECGIINRFKVIAHGECLGEVILTQPGKHNILNALAAIGVA 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKR------YRCALNQGFFTLIDESYNANPASMKAAI 357
             +       I+ L+ F     R +            + G   +   +       +    
Sbjct: 289 LEVGISPKCCIEGLANFKGVGRRFEYKGEKNGITVIDDYGHHPIEVAATLETARKVFPDR 348

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
            ++    PH   R  A+ G+ C++        +          I      G +   L   
Sbjct: 349 RIVVAFQPHRFSRTQALFGEFCQVLSTVDKLLLTEIYPALEKPI-----PGINSQNLAQG 403

Query: 418 LPR--SIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + +   I V Y   +D +F  +   L  GDV+
Sbjct: 404 IQQISKIDVTYYPDIDAVFHALPHVLCAGDVL 435


>gi|220912337|ref|YP_002487646.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
 gi|219859215|gb|ACL39557.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrobacter
           chlorophenolicus A6]
          Length = 525

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/375 (14%), Positives = 105/375 (28%), Gaps = 35/375 (9%)

Query: 97  KLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-T 152
           +LA   R R        +AITG+ GKTTT  +    L +             ++G P+  
Sbjct: 125 ELAWRVRRREGRKTADWLAITGTNGKTTTVGLTESMLRAAGL----KAIAVGNVGKPILD 180

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             R PV+ D    EL    L         + P  +V   +A  H+      +   + KA+
Sbjct: 181 AIREPVEYDVFAVELSSFQLHWAE----SLSPLASVCLNVAEDHVDWHGSYDSYLADKAK 236

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           ++E  +K         ++   +  A          ++      +   + +          
Sbjct: 237 VYERTQKACLYNAEQFETERMVENADVVEGCRAIGFTTVTPAISMLGVVEGLLVDRAFIE 296

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +     +  +           +   L    ++ A    A               R + 
Sbjct: 297 ERRDSAAELAAMADLGPIAPRHMVANALAAAGLVRAYGVDAAAVRQGIRDYVPGDHRIQP 356

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI-- 390
                    +++S   NP +  A+++  + +     G    V  D      + +  H   
Sbjct: 357 VARHEGVLWVNDSKATNPHAAAASLAAFTNVVWIAGGLSKGVTYDDL----VREQAHRLK 412

Query: 391 ----------DLAEVLSLYNISH-VWLSGF-HVLALKDALPRSIHVHYSE-----TMDGL 433
                     +LA  L  +     V  +       ++ A                 M   
Sbjct: 413 AVVLIGTDSTELAGALQRHAPDVPVIAAAPGETEEVQTAAAEGATGTRFPLSGEQVMSQA 472

Query: 434 FLFIQSSLVDGDVVV 448
                     GD V+
Sbjct: 473 VATAAQLAGSGDTVL 487


>gi|269103565|ref|ZP_06156262.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163463|gb|EEZ41959.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 451

 Score = 46.8 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 115/365 (31%), Gaps = 28/365 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VMAVSGTHGKTTTASMLA--WILEDCGYNPGFLVGGVLGNFGVSARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I   + 
Sbjct: 163 DSAFFDKRSKFVHYHPRTLIMNNLEFDHADIFDDLKSIQRQFHHLVRTVPGNGRILAPHG 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
            +  +              +S  +    D   +  K  ++ S   V L G+  +V     
Sbjct: 223 VAAIDETLE-------MGCWSELEYIGGDGHWQAEKLMADGSQFSVLLDGE--KVGVVNW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R           + D+   A
Sbjct: 274 PLVGDHNVNNALMAIAAARHVGVTPDLACEALGNFINTKRRLELKGEVNGVKVYDDF--A 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +         +     + R +AVL    +  ++G         L           V+
Sbjct: 332 HHPTAIELTLGGLRAKVGADARILAVLEPRSNTMKLGVHKDDLAPSL------QAADEVF 385

Query: 406 LSGFHVL--ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L   + +  ++ D   + S     ++ +DGL   I +   +GD ++V  SN  GF  + +
Sbjct: 386 LFQPNNIPWSVSDIANQCSQPAFTNDDLDGLVAEICAHAKEGDTILV-MSNG-GFGGIHD 443

Query: 463 LLLEE 467
            LL +
Sbjct: 444 KLLAK 448


>gi|91977862|ref|YP_570521.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris BisB5]
 gi|91684318|gb|ABE40620.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris BisB5]
          Length = 470

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 55/380 (14%), Positives = 112/380 (29%), Gaps = 43/380 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    +  +AITG+ GK+TT  ++   +               +IG  +     P     
Sbjct: 109 RHAPDSPFVAITGTNGKSTTTALIAHLMREAGYDTQMG----GNIGTAILSLEPPRSGRV 164

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT
Sbjct: 165 HVIEMSSYQID----LTPSLAPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGT 220

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  DD F      +    G + +    K   A       +     +    +   +   
Sbjct: 221 AIIGVDDGFGRDAADRLERAGKQVVRISVKQPLASGITADHETIRSSAGGASREIARLGG 280

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +      ++       +   +++  +         S         +  R +  +G    +
Sbjct: 281 IGSLRGLHNAQNAAAASAAALALGVSADALQKGLRSFPGLAHRMEQVGRQSSGEGATLFV 340

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+S   +I     G+     G +  + E                 I 
Sbjct: 341 NDSKGTNADATAKALSSFGEIFWIAGGKPKT--GGIESLAEYFPR-------------IR 385

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------SLVDGDVVVV---KSS- 452
             +L G         L   +    SET+D                    VV++    +S 
Sbjct: 386 KAYLIGEAAEEFAATLEGKVAYEISETLDNAVAAAARDAAASGLAEP--VVLLSPACASF 443

Query: 453 --------NSCGFYRLINLL 464
                       F  L+  L
Sbjct: 444 DQFRNFEIRGTRFRELVTAL 463


>gi|294101819|ref|YP_003553677.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
 gi|293616799|gb|ADE56953.1| UDP-N-acetylmuramate/alanine ligase [Aminobacterium colombiense DSM
           12261]
          Length = 471

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 69/349 (19%), Positives = 116/349 (33%), Gaps = 29/349 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           I I G+ GKTTT  M+ + L     +    IG     IGV   L   P      + EL  
Sbjct: 116 IGIAGTHGKTTTSSMIALILEQSGLSPTLAIGGELCDIGVNAKLGEGPY----MVAELDE 171

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S             P+IAV+T     H++++   + +  A        +  G + L  +D
Sbjct: 172 S-----DGSFEGFHPNIAVLTNADWDHVNHYPTFDSVIEAFGRFLVNPKDDGVVVLCGED 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +  ++H       Y +G + +      +       S+   +      EV     G
Sbjct: 227 VGLTRILDENHLKNEVITYGWGSAWDWGAYNVEHVPGGGVSFSVAKNGKFVDEVKLSVSG 286

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N L    +   L        K L  F   + R +          +    + Y  +
Sbjct: 287 DHNIMNALAACVVADRLEVPFPLIKKTLKTFRGAKRRLQYIGSTNGMDIY----DDYGHH 342

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL---------YN 400
           P  + A ++ LSQ+ P  E R   V          + + + D A+VL L         Y 
Sbjct: 343 PREIAATLNTLSQMFP--ERRLNVVFQPHR--FSRTAAMYKDFADVLLLADRLFLLPVYG 398

Query: 401 ISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                + G     +   L   +  +      M      ++ S+ +GDVV
Sbjct: 399 ADEEPIEGIDSNLIYSELQLRQYKNCILCSDMYDAVALLKESMEEGDVV 447


>gi|33593931|ref|NP_881575.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis Tohama
           I]
 gi|33598427|ref|NP_886070.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella parapertussis
           12822]
 gi|33564005|emb|CAE43271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella pertussis Tohama I]
 gi|33574556|emb|CAE39203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella parapertussis]
 gi|332383350|gb|AEE68197.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Bordetella pertussis CS]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 56/375 (14%), Positives = 103/375 (27%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+ G+ GKTTT  ML   L   ++    +             AR        + 
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPD--LQVSARYAPGARPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F  +  I +    +   +   G +
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQL 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L  D    E +  +     +      G+ +             + ++        +  V
Sbjct: 219 VLPTDAPALERVLERGCWTPVARFGPGGQWQAGP-------ADEQGAFEVSVDGRDAGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H  +N L  L             I+ALS F   + R +          +    
Sbjct: 272 RWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGTVNGIRVYDDFA 331

Query: 344 E---SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M                  +L  
Sbjct: 332 HHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPE------------ALAG 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G H               P        + +  L   + ++   GD V+V  SN
Sbjct: 380 ADLVFCFGDHAGKHALGWDPARVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLV-MSN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGVHGKLLDAL 452


>gi|315453126|ref|YP_004073396.1| ferrochelatase [Helicobacter felis ATCC 49179]
 gi|315132178|emb|CBY82806.1| ferrochelatase [Helicobacter felis ATCC 49179]
          Length = 316

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             ++++  +G              + + +       F A++    D    I  A++ GA 
Sbjct: 3   VAEVVEITRGVLQSTPYIRAFAHATTNPKRAR-GALFVALQ--SQD----IQTAIENGAY 55

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
            V+ + +M   I    I    V ++  AL +L     
Sbjct: 56  GVLYDQNM--EISDPEIAWIYVSNLDQALFRLLRYHL 90


>gi|261416751|ref|YP_003250434.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373207|gb|ACX75952.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328181|gb|ADL27382.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 105/357 (29%), Gaps = 40/357 (11%)

Query: 102 ARLRSKAT-IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA-RMPVD 159
              ++++   + +TG++GK +T  M++  L           +   + GVP          
Sbjct: 100 FLEQTQSKATVGVTGTLGKGSTVSMISHILDK----CGKANAIGGNFGVPALDLLEDETP 155

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               I EL    L  +        P + V+  ++  HL     +EE   AKA +    ++
Sbjct: 156 DRISILELSSFQLMTLSVS-----PDVGVVLRVSTEHLDWHKSVEEYRDAKANLVRWQKR 210

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            GT     D      + ++S A     +     + N D          +       L   
Sbjct: 211 EGTCVYLKDAEPTAKIASESPAKTKYAVSLADGASNGDG---------DAVIDGATLTID 261

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +            +           A       A       E    R      +   
Sbjct: 262 GSTLYLADCKVRGIYQLENMAAATLACKALGVKVADAFEALKSYETLPFRMEFKGEKRGI 321

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++SY   P +  AA   +       +     +LG     G    +   +L+E+L   
Sbjct: 322 EFYNDSYATRPDATIAATGSM-------KRPFALILG-----GSEKNADFTELSEILVKQ 369

Query: 400 --NISHVWLSGFHVLALKDALPR------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             N+  V L G     +   L +       I      T++  F    +    G V++
Sbjct: 370 RPNLKRVALIGATAERMLADLKKAGVDEAGIKTAIFPTLEDAFADSLNIGEGGTVIM 426


>gi|121534866|ref|ZP_01666685.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
 gi|121306465|gb|EAX47388.1| cyanophycin synthetase [Thermosinus carboxydivorans Nor1]
          Length = 885

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 124/402 (30%), Gaps = 50/402 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTL 153
            + +  IIAITG+ GKTT   M+     +                           P + 
Sbjct: 475 GQGRIPIIAITGTNGKTTVTRMIGHIWRTAGYCVGMTTTDGIYIDGHCIQKGDTTGPASA 534

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
             +  D    +  L  +  G +R      +  + +IT I   H        ++++A  K+
Sbjct: 535 RAVLTDPTVEVAVLETARGGIVRGGLAFDQCDVGIITNITEDHLGQDGIEDLDDLAYIKS 594

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSH---------ALGIKTIYSFGKSKNADFQLRK 262
            + E +   G   LN DD +   L  +           A  I      G    A F    
Sbjct: 595 LVVETVRPGGYALLNADDPYVVRLAGRVRGEVVYFSTEADNIVVRRHLGIGGKAFFVKDS 654

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
               +  S          + V   GI  H  QN L+       L   +    + L+    
Sbjct: 655 ILYAACGSLASPICAVGDIPVTLGGIAVHNLQNALVAAAACYCLKVPMTHIRQGLA---- 710

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
              +       L  G   +  + Y  NPA  +A I+ + ++          ++G +   G
Sbjct: 711 TFDQNPGRLNLLTLGDIRVCID-YGHNPAGYQALINTVRRLGATR------LVGVIAAPG 763

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSI-HVHYSETM----- 430
           +      +++   ++     ++++       G     +   L R +    + E       
Sbjct: 764 DRRDDVIVNVGR-IAGRGFDYIYIKEDADRRGRAPGEVAQLLRRGVLEAQFPEDRIVTIL 822

Query: 431 --DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                     +    GD+VVV       + +++  + E   A
Sbjct: 823 AETEAVAKALADARPGDLVVVF---YEKYEKVLAGIQEFAEA 861


>gi|311280929|ref|YP_003943160.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
 gi|308750124|gb|ADO49876.1| UDP-N-acetylmuramate/alanine ligase [Enterobacter cloacae SCF1]
          Length = 491

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 64/401 (15%), Positives = 130/401 (32%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
               + +     IPV        A   LA   R R     IAI G+ GKTTT  M+    
Sbjct: 91  ENPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVASIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +            +     +  + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVK---AAGVHARLGNSRYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S +AD ++  + +  ++  +  ++     + VV +  G H A N    + + +    
Sbjct: 250 YGFSDDADVRVEDYSQIGAQGHFTLIRQDKAVLNVVLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           D ++ ++AL+ F     R         +    +    ++ + Y  +P  + A I      
Sbjct: 310 DDESILRALASFQGTGRRFDFLGEFPLQEVNGKSGSAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P        V+         ++  + D A VL+   +  + +            G    
Sbjct: 370 WPDKN----LVMLFQPHRFTRTRDLYDDFANVLTQ--VDALLMLDVYPAGEAPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     V          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRGRGKVDPILVSDPAQVAEMLAPVLTGNDLILVQG 464


>gi|256821827|ref|YP_003145790.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
 gi|256795366|gb|ACV26022.1| UDP-N-acetylmuramate [Kangiella koreensis DSM 16069]
          Length = 451

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 110/372 (29%), Gaps = 29/372 (7%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL--ARMPVDVDFG 163
               ++A  G+ GKTTT  ML   L                 GVP     +    +  F 
Sbjct: 101 HDKWVLAAAGTHGKTTTASMLAWILQYANLEP-----GFLIGGVPENFGLSARVTESPFF 155

Query: 164 IFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + E                  RP   ++  +   H   F  +E I +    +   +   G
Sbjct: 156 VVEADEYDTAFFDKRSKFVHYRPRTLIMNNLEYDHADIFPNLEAIKTQFHHLLRIVPGNG 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +    DD+  + +  +             K    D    ++K   E       L     
Sbjct: 216 LVIYPKDDANLQNVVERGLW--------SDKELIGDEHGWQYKLLEEDGSHFEVLFAGQK 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           +   +     +         I +   A V  +    ++   K  + +        G    
Sbjct: 268 QGEVNWPLIGLHNVNNALAAIAAARHAGVPASHCCDALAEFKNVKRRMELKGEASGVKVY 327

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D +++          + L         +R+  + D+      S      L  + SL   
Sbjct: 328 DDFAHHPTA-----VKTTLDGFRAKVGEQRVIAIVDLRSATMRSGIHKDTL--LASLKGA 380

Query: 402 SHVWL---SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V +   + F      + + +  ++     +D +   ++  +  GD ++V  SN  GF 
Sbjct: 381 DCVIIHKPAEFDWQFPIEQVNQFDNLKILPDVDSILNSLKEMVQSGDNILV-MSNG-GFG 438

Query: 459 RLINLLLEEFPA 470
            +   LL++  A
Sbjct: 439 AIHQKLLQQLAA 450


>gi|241888445|ref|ZP_04775756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemella
           haemolysans ATCC 10379]
 gi|241864887|gb|EER69258.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemella
           haemolysans ATCC 10379]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 108/345 (31%), Gaps = 36/345 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
               ++AITG+ GKTTT +M    L +  K          +IG P             I 
Sbjct: 106 FNIDMVAITGTNGKTTTTQMTFDILKAANKDVF----LAGNIGYPSIEVAYNHPNSLIIT 161

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    L   ++     +P +A IT +   HL     +E   +AK  I++   +   + L
Sbjct: 162 EVSSFQLQGTKYF----KPSVAAITNLGVGHLDYHGSVENYRNAKRNIYKNQTQDDILVL 217

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  +     L   +  + +       ++  AD  +R      +   +    +        
Sbjct: 218 NIKELEKYELSKINSQVILYDTK---ENSEADVFVRNNIVVYKDVELFDVTKMS------ 268

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+   +    I      +      V +   G   R +           ++S
Sbjct: 269 ----LPGLHNVENAINAALISYIKGASIETIREVLYSFSGVKHRLQYVGEHNGVKFYNDS 324

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              NP +   A+S         E   I V G     G+       +L        I  + 
Sbjct: 325 KATNPVATTTALSGF-------EKNIILVCG-----GKDRGIDFKELVPFFPR--IKAMV 370

Query: 406 LSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           + G     L D      +  H +  +D   +      V+ D+V++
Sbjct: 371 VVGESKEILYDLATTNGLDCHKATKVDDATILANKLAVEDDIVLL 415


>gi|86516449|gb|ABC97904.1| MurD [Shigella flexneri]
 gi|86516452|gb|ABC97906.1| MurD [Shigella flexneri]
          Length = 154

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
             R+   L       I++S   N  S +AA++ L     H +G    +LG   +  + S 
Sbjct: 17  PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP 71

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                LA  L+  N+  ++  G     L    P       +ETM+     +   +  GD+
Sbjct: 72  -----LARYLNGDNV-RLYCFGRDGAQLAALRPEV--AEQTETMEQAMRLLAPRVQPGDM 123

Query: 447 VVV 449
           V++
Sbjct: 124 VLL 126


>gi|319944584|ref|ZP_08018852.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
 gi|319742121|gb|EFV94540.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Lautropia mirabilis ATCC
           51599]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 57/347 (16%), Positives = 104/347 (29%), Gaps = 13/347 (3%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++ + G+ GKTTT  +L   L +  +            G     AR+     + + E   
Sbjct: 105 VMGVAGTHGKTTTASLLAWILQAAGREP--GFLIGGVPGNFPVSARLGRK-PYFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  AV+  +   H   F  +  I +    +   +   G I    
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAVLNNLEYDHADIFPDLGAIETQFHHLVRTVPGQGRIIWPS 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D    + + A+      + + + G   +   +           +   +   +   V    
Sbjct: 222 DSEALQRVLARGCWSQTEALGAGGWHASDVTEEADATV-----FTLWRGDVEQGRVRLPL 276

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N +  +     +      +I+AL+ F     R +                 + 
Sbjct: 277 AGEHNRANAIAAIVAAEHIGITPTESIEALAAFQGVRRRLEVRGTVGGVTV-IDDFAHHP 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
              A+  A +    Q   H  GR +AVL +       + +    L   L   ++   +  
Sbjct: 336 TAIATTIAGLRARMQAGSHPGGRLLAVL-EPRSNTMRTGTLKAQLPGSLQDADLVFCYAG 394

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           G    A     P    V     M  L   I ++   GD V+V  SN 
Sbjct: 395 GIDWDAQAALAPLGERVAVFRDMLALEAAILAAARPGDQVLV-MSNG 440


>gi|317011231|gb|ADU84978.1| hypothetical protein HPSA_05005 [Helicobacter pylori SouthAfrica7]
          Length = 335

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H FI  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HAFIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|120609513|ref|YP_969191.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
 gi|120587977|gb|ABM31417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           citrulli AAC00-1]
          Length = 667

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/372 (13%), Positives = 98/372 (26%), Gaps = 29/372 (7%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           A+   A+ A       ++AITG+ GKTT   +  + +    ++ A  G+    + +    
Sbjct: 267 AMALDALKASHGYAPAVLAITGTNGKTTVTSLTGLLVECAGRSVAVAGNIGPTL-LDTLG 325

Query: 154 ARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
             +  D      + EL    L           P  A +  +   HL     ++  A AKA
Sbjct: 326 RHLDADTLPQAWVLELSSFQLEGAA----GFEPTAATVLNVTQDHLDWHGDMQAYARAKA 381

Query: 212 EIFEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            IF           +          ++ K     ++   +FG            +     
Sbjct: 382 RIFGESGLMVLNREDAAVMGMLPPPVRVKLQKPQLRAHVTFGADMPQ-------RPGDFG 434

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                 +                  +    L I  ++ AD        +  +        
Sbjct: 435 IETVNGMAWLVRAQESDETARRTRSHAEEDLHIQRLIPADALRIRGRHNAVNALAALALA 494

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISV-----LSQISPHGEGRRIAVLGDMCE---- 380
           +               Y   P  ++    V              G  +A LG +      
Sbjct: 495 HAAGCAFAPMLYALREYRGEPHRVEPVGRVNEVEYFDDSKGTNVGATVAALGGLGADRRV 554

Query: 381 ---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLF 436
              +G   +        +     +    L G     ++ AL    + +  + T+      
Sbjct: 555 VVILGGDGKGQDFSPLAMPVSRYVRAAVLIGRDGPQIRAALRDAGVPLIDAPTLPEAVRL 614

Query: 437 IQSSLVDGDVVV 448
                  GD V+
Sbjct: 615 AAQRAHAGDAVL 626


>gi|315652426|ref|ZP_07905414.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
 gi|315485325|gb|EFU75719.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium saburreum DSM
           3986]
          Length = 437

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 114/349 (32%), Gaps = 34/349 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+     +  T          I   +       + D  + E    
Sbjct: 93  IAISGTHGKTTTTSMLS---YILLDTNLDPTISVGGIVKKIRGNVYIGNGDTFVTEAC-- 147

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P + VI  I   HL  F  +++I  +  +  +   + G I +N    
Sbjct: 148 ---EYTNSFLELYPTVGVILNIEEDHLDFFKDLDDIRDSFKKFVKNTSREGCIIINDKIK 204

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +        ++          A+ +          ++  V  +    +V     G 
Sbjct: 205 NNREITMGYEGNVVRYGTENSDCYAANIRYDAIGYP---TFDLVHKEETYEDVKLCVGGN 261

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + +   L   ++   + L  F   + R +       +     I + Y  +P
Sbjct: 262 HNIYNALAAVCVAFELGVGIEDIRRGLLEFKGVDRRFE----IKGKLDGITIVDDYAHHP 317

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
           + + A +++  +           V+         +++   D A VL   N+  V ++   
Sbjct: 318 SEISATLNIAKRYP-----HDRLVVVFQPHTYTRTKALFEDFANVLK--NVEQVIIAKIY 370

Query: 408 --------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
                   G     L D +     +    +T D +  ++   L  GD++
Sbjct: 371 PARETDNLGVSSHLLSDRINELGGNATSFDTFDEIENYLLEDLHKGDLL 419


>gi|291557260|emb|CBL34377.1| UDP-N-acetylmuramate--L-alanine ligase [Eubacterium siraeum
           V10Sc8a]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 120/391 (30%), Gaps = 38/391 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +           L  L  +         + ++G+ GKTTT  M
Sbjct: 75  AAIMSDNPELIAAKASGVKTVE----RCELLGLVTSWYN----KAVCVSGTHGKTTTSSM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT    +     + +          +  +      D  + E       E       + P+
Sbjct: 127 LTHMYLAQNVDLSTVIGGKLK---AIGGSGRAGSSDVMVCEAC-----EFSNTFLHLFPN 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   HL  F  ++ + ++  +  +         L  +      ++A   +   K
Sbjct: 179 ISIILNIDADHLDFFKTMDNLRASFTKFCDNTTD----ILVVNGDDENTMRAVKASGFDK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +FGK+    +     K+ S+       ++  S               +   +   + 
Sbjct: 235 QIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIHVPGAHNVLNA-VAACAA 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA---------NPASMKAA 356
             A   T            G G+R+      G  T++D+  +             +M+  
Sbjct: 294 ALATGVTPENINKGLSTFWGAGRRFERLATIGGITVVDDYAHHPAEVAATLKTAKAMQDF 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             V +   P    R   ++ D     E++    +         N  +V+        L  
Sbjct: 354 KRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMGSREKNTYNVY-----SADLAA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +P      +  T + +  ++  +   GD++
Sbjct: 409 KIPG---CKWFPTFEEVARYVADNAESGDMI 436


>gi|153948046|ref|YP_001402574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
 gi|152959541|gb|ABS47002.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia pseudotuberculosis IP 31758]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMLA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  I+ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYSPRPLIMNNLEFDHADIFDDIKAIQKQFHHLVRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVLLDNNVVGEVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A            R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINASRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   I  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAYWSADIDQLVDMIVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|114763032|ref|ZP_01442462.1| UDP-N-acetylmuramate--L-alanine ligase [Pelagibaca bermudensis
           HTCC2601]
 gi|114544356|gb|EAU47364.1| UDP-N-acetylmuramate--L-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 478

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 75/403 (18%), Positives = 124/403 (30%), Gaps = 49/403 (12%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      L       +PV     V  A   LA   RL+S    +A+ G+ G
Sbjct: 82  AEVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRLKSN---VAVAGTHG 132

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L +           N  I             ++ + E   S        
Sbjct: 133 KTTTTTMVATLLDA---GQLDPTVINGGIIHAYGSNARVGLGEWMVVEADES-----DGT 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IA++T I P H+ ++  IE +     +    +   G      D +  + L  +
Sbjct: 185 FNRLPATIAIVTNIDPEHMEHWGSIENLRDGFYQFVSNIPFYGLAVCCTDHAEVQALVGR 244

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T     ++      LR  K  +    +      K  E      G H   N L 
Sbjct: 245 VSDRRVTTYGFNAQADVRAVNLRYEKGIAHFDILLQGEDSKIEECTLPMPGDHNVSNALA 304

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    +    AL+ F     R  R            + + Y  +P  + A + 
Sbjct: 305 AVAVARHLGMTREEIRAALAAFGGVNRRFTRVGEVNG----VTVIDDYGHHPVEIAAVLK 360

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------- 409
                    EGR IAV              H    +  + +N + V   G          
Sbjct: 361 AA---RQASEGRVIAV-----HQPHRYSRLHTLFDDFCACFNEADVVAIGDVYGAGEDPI 412

Query: 410 ---HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                  L   L R  H         D L   ++     GD+V
Sbjct: 413 EGASRDDLVAGLIRHGHRHARAIHDEDDLERLVREQARPGDMV 455


>gi|283786910|ref|YP_003366775.1| murein peptide ligase [Citrobacter rodentium ICC168]
 gi|282950364|emb|CBG90012.1| murein peptide ligase [Citrobacter rodentium ICC168]
          Length = 457

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 115/368 (31%), Gaps = 36/368 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       +       GVP          + DF + E 
Sbjct: 105 VLAVAGTHGKTTTAGMAAWILEACGYKPGFVIG-----GVPGNFEVSARLGESDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I  
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIY 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
             +D   +   A          +S  +        +  K  ++ S  EV     K  EV 
Sbjct: 220 PENDINLKQTLA-------MGCWSEQELVGEQGHWQAKKLNADASAWEVWLDGEKVGEVK 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +      A  A           +R      +     + +
Sbjct: 273 WSLVGEHNMHNGLMAIAAARHVGVQPADAAAA----LGSFINARRRLELRGEANGVTVYD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNI 401
            +  +P ++   ++ L+ +     G    +   + E    +        DLA  L     
Sbjct: 329 DFAHHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA-- 381

Query: 402 SHVWLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V+L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 382 DEVYLLQPPHIPWQVAEVADACVQPAHWSGDVDALAEMVVKTAQPGDHILV-MSNG-GFG 439

Query: 459 RLINLLLE 466
            +   LL+
Sbjct: 440 GIHQKLLD 447


>gi|227548915|ref|ZP_03978964.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079004|gb|EEI16967.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 483

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 127/399 (31%), Gaps = 40/399 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +      SIPV    D+L  L +          +T + + G+ GKT+T  M  +AL
Sbjct: 83  DNPELVRAAEESIPVIRRSDLLAELME---------GSTQLLLAGTHGKTSTTSMAVVAL 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +  +  + +     ++             +  + E   S    +R+     +P +AVIT
Sbjct: 134 QAAGEDPSFVIGGQLNLAGTNAHQGAG---EVFVAEADESDASLLRY-----KPDVAVIT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY-- 248
            I P HL  F   E+         + +   G + +  DD+       ++ A G+      
Sbjct: 186 NIEPDHLDYFGTAEKYFEVFDSFADRIPPGGHLVVCLDDAEAAACGQRARARGVNVFGYG 245

Query: 249 -----SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                S      A   +        +  + +    +++       G HM  N    L   
Sbjct: 246 TAAAASRYPDIPAAAVITASDTTFAEVELTIGGVQRTVRYTLSIPGQHMVLNAAGALVAC 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGK-RYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +++ AD     + L+ F     R + + +    +     + + Y  +P  + A ++   +
Sbjct: 306 TLVGADPGKLAEGLTGFTGVRRRFELKGQLTGGRFAGVRVYDDYAHHPTEVTAVLTAARE 365

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
                      V      +   + +F    A   +L     V L            G   
Sbjct: 366 TVRAAGQGGKVVACYQPHLYSRTIAFAEQFA--AALSLADSVVLLDIFGAREEPVEGVDS 423

Query: 412 LALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + D +    S    Y        + I      GD+V+
Sbjct: 424 RIIIDQMDPEASARTVYEPNFSQAPVTIAELAEPGDLVL 462


>gi|183602419|ref|ZP_02963785.1| hypothetical protein BIFLAC_05220 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219683266|ref|YP_002469649.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191227|ref|YP_002968621.1| hypothetical protein Balac_1203 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196633|ref|YP_002970188.1| hypothetical protein Balat_1203 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218338|gb|EDT88983.1| hypothetical protein BIFLAC_05220 [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620916|gb|ACL29073.1| UDP-N-acetylmuramyl-tripeptide synthetases [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249619|gb|ACS46559.1| hypothetical protein Balac_1203 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251187|gb|ACS48126.1| hypothetical protein Balat_1203 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794220|gb|ADG33755.1| hypothetical protein BalV_1167 [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 293

 Score = 46.8 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L                 V  ++ D  S+     F  + G   D    +  A +KG
Sbjct: 13  TLGMLADRYGYELSPKFSRAVTVTSLASDIDSVTAGSLF--MPGKRIDAAR-VAAASRKG 69

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
           A  V++   M +S     IP+   D     + ++A         T  + AI G
Sbjct: 70  AYAVMLPKSMRSSDLEADIPLVYADPTPREIGQIASNMTGNPAGTLAVFAIAG 122


>gi|323704370|ref|ZP_08115949.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536436|gb|EGB26208.1| FolC bifunctional protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 425

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 58/200 (29%), Gaps = 17/200 (8%)

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +     S  ++        +    IG H   N  + L  V  L +   T  +     
Sbjct: 225 NDVEIIESNSEYQIFNYRDYKNLKICIIGKHQIYNASLALMAVEKLRSQGITISEEAIRV 284

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
              + +       L++  F +ID ++N    S+     +   ++     R + V+G + +
Sbjct: 285 GLADAKWPGRIEVLSRCPFIVIDGAHNPQGMSV-----LKEALNLFSYERLVLVIGMLKD 339

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSIHVH---YSETMDGLFL 435
             + +      +  +        V  +          + L   I      + E +D    
Sbjct: 340 --KDTDKMLKLIVPLA-----DIVITTKPVSDRAYTAEELAEKIKGVNPLHFEDIDDAIN 392

Query: 436 FIQSSLVDGDVVVVKSSNSC 455
                    D+++   S   
Sbjct: 393 EALRKANKKDLILFCGSLYM 412


>gi|187776916|ref|ZP_02993389.1| hypothetical protein CLOSPO_00455 [Clostridium sporogenes ATCC
           15579]
 gi|187775575|gb|EDU39377.1| hypothetical protein CLOSPO_00455 [Clostridium sporogenes ATCC
           15579]
          Length = 429

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 106/323 (32%), Gaps = 27/323 (8%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +        VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKKVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
             A    G+ K   + +       E +  K        +    +    + +    ++   
Sbjct: 179 KIAYEKAGIIKKAPVIIYPQKKESEKIIEKVCKEKKSELIKV-EDNLINVKREIIQKNIG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N ++ +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCIVVILAIEKLIKLGIKIEKIYIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N                          +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNMEGIEGLKNNVN------KYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L   AL  + +  Y E     +   +S  
Sbjct: 348 VEDMIKTLVPLA-DRVLTVTPHNDRGESSKELMHIALKYNNNCEYLEDYKECYNKGKSYY 406

Query: 442 VDGDVVVVKSSNSC--GFYRLIN 462
            +GD++++  S        +LI 
Sbjct: 407 EEGDMILICGSLYMVGDMRKLIK 429


>gi|256369849|ref|YP_003107360.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
 gi|256000012|gb|ACU48411.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           microti CCM 4915]
          Length = 467

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 111/374 (29%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +           +   D  +  + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGT----AIIGIDDAYCQVI 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
           A         +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 231 ADRLHGAGIRVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|332652745|ref|ZP_08418490.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
 gi|332517891|gb|EGJ47494.1| UDP-N-acetylmuramate--alanine ligase [Ruminococcaceae bacterium
           D16]
          Length = 464

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 58/392 (14%), Positives = 114/392 (29%), Gaps = 31/392 (7%)

Query: 63  KGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  V+       +   +A+  +  IPVF                R    A  +A  G+
Sbjct: 78  QGADCVIRTAAVHDDNPEIAAARAAGIPVF------ERAQAWGAIMRHYQNALCVA--GT 129

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M T    + ++    +               +      G  +  +    E  
Sbjct: 130 HGKTTTTSMCTHIFLAAQRDPTVMIGGVL--------PALGAGHRVGKGDTIILESCEYC 181

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P +AVI  +   HL  F  +E++  +     + + + G +  + DD+      
Sbjct: 182 NSFLSFFPTVAVILNVDADHLDFFKDLEDVKHSFRRFAQLVPQGGCVVADGDDANTMDAL 241

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQN 295
                  +      G    A+    K     +  +    L   S+ V   H +   +A  
Sbjct: 242 KDLDKPMLTFGLEQGDIHAANLTWNKGLPTFDLIYKGKTLGSISLRVPGIHNVRNALAAA 301

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                  V +            +    +           +       +     +      
Sbjct: 302 GAALQLNVPVEAIREGLYAFGGAGRRFEHKGEYHGAVVYDDYAHHPHELQALLSTVKTLG 361

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
              V+    PH   R   +  D  E+ +L       LAE+ +      +   G     L 
Sbjct: 362 YQRVICAFQPHTYTRTKELFDDFVEVLKLPDKV--LLAEIFAARETDTL---GISSKDLA 416

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           D +P   +  +  T++ +    +     GD++
Sbjct: 417 DRIP---NAEFCPTLEDVTARFKELAQPGDLL 445


>gi|330859320|emb|CBX69667.1| hypothetical protein YEW_CM10490 [Yersinia enterocolitica W22703]
          Length = 192

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 22/168 (13%)

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N+L+ L  +  L   +   + A     P  GR + +              + +A      
Sbjct: 8   NLLVALATLLSLGYPLTQLLAAAPHLQPVCGRMEVFNAPGKPTVVVDYAHTPDA------ 61

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL-- 412
                L+    H +G+   V G     G         L   ++      V ++  +    
Sbjct: 62  -LEKALAAARLHCKGQLWCVFG----CGGDRDKGKRPLMGGIAEQLADRVVVTDDNPRSE 116

Query: 413 -------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                   +   L  + H                     DVV++  K 
Sbjct: 117 EPQAIVADILSGLLDAGHAQAIHGRAEAVTSAIMQAKADDVVLIAGKG 164


>gi|310287099|ref|YP_003938357.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
 gi|309251035|gb|ADO52783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           bifidum S17]
          Length = 476

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 120/367 (32%), Gaps = 41/367 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R    A  + ITG+ GKT+T EM +  L +       +     +IG  ++ A +  D D 
Sbjct: 96  RTGRPAPWVGITGTNGKTSTTEMTSAMLCANGLVAPAV----GNIGKAVSHAAVDPDNDA 151

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L     L        A IT IA  HL    GIE  A+ K+++F  + +   
Sbjct: 152 LCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGIEAYAADKSKVFRNVRRALV 207

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWM 272
              +          A +     +  ++ G               D          +++ +
Sbjct: 208 FNADDRRVSALASAAHTAEGCRRIGFTLGVPQPGQIGVDDGWIVDRSGVAGGAFGDETRL 267

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +   +      +  H+  + +  L +   +  D+D A+ AL  F P   R +    
Sbjct: 268 APVQEFPHLCEPDGTVYPHLLADAMTALALALGMGVDLDKALAALKAFAPGGHRIQTVAT 327

Query: 333 --ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
               + G    ID+S   N  +        + +S       + + G + + G   +    
Sbjct: 328 AATGDGGSIRFIDDSKATNAHA------ARASLSSFAPKSVVWIAGGLAK-GSRFEQLVA 380

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSE------TMDGLFLFIQSSL 441
           D       + I    + G     + +A   S   I +   E       M        +  
Sbjct: 381 D-----QAHTIKAAVIIGKDQKPMLEAFAASAPDIPLTVIEPEPSDTVMARAVDAAGAYA 435

Query: 442 VDGDVVV 448
             GDVV+
Sbjct: 436 GTGDVVL 442


>gi|238792997|ref|ZP_04636626.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
 gi|238727597|gb|EEQ19122.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia intermedia ATCC 29909]
          Length = 461

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 74/419 (17%), Positives = 130/419 (31%), Gaps = 49/419 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   I  +S P +  D VL                 ++A+ G+
Sbjct: 67  IGNAMSRGNPC--VEAVLEQGIPYVSGPQWLHDHVL-------------PGRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFELGMSHLGE 174
            GKTTT  M+T  L +       +       GVP          +  F + E        
Sbjct: 112 HGKTTTAGMVTWILEACGYEPGFVIG-----GVPGNFDVSARLGNSPFFVIEADEYDCAF 166

Query: 175 IRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                      P   V+  +   H   F  ++ I      +   +  TG I +  +D+  
Sbjct: 167 FDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVPDNDNHL 226

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           + + A       + +   G                   +          EV    +G H 
Sbjct: 227 KQVMAMGCWSEQELVGETGSWFAR------KVSTDASVYEVFLDNKLVGEVSWSLVGEHN 280

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N LM +     +      A KA           +R      +     + + +  +P +
Sbjct: 281 MHNGLMAIAAARHVGVSPADACKA----LGNFINARRRLELRGEANGVTVYDDFAHHPTA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           + A ++ L      G  R +AVL    +  ++G         L           V+L   
Sbjct: 337 ILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVFLFQP 389

Query: 410 H---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                  ++ A       ++S  +D L   I  +   GD ++V  SN  GF  + N LL
Sbjct: 390 QHIPWQVVEVAEACIQPAYWSADIDTLVDMIVKTAQPGDHILV-MSNG-GFGGIHNKLL 446


>gi|182416775|ref|ZP_02948170.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237668111|ref|ZP_04528095.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379355|gb|EDT76852.1| folylpolyglutamate synthase [Clostridium butyricum 5521]
 gi|237656459|gb|EEP54015.1| tetrahydrofolate synthase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 435

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHV--LALKDALPRSI-----HVHYSETMDGL 433
           +G L+     ++ + ++      ++    H     L + L R I     +V   +  +  
Sbjct: 342 LGILADKQVNEMIKEITPMA-EKIFALTPHSDRAELSEDLKREIEKVNQNVEAFDDYNEA 400

Query: 434 FLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLE 466
                    D D+++V  S        ++IN ++ 
Sbjct: 401 INEALKVAEDDDLILVSGSLYMIGDMRKIINKIIN 435


>gi|163843689|ref|YP_001628093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           ATCC 23445]
 gi|163674412|gb|ABY38523.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis ATCC
           23445]
          Length = 467

 Score = 46.8 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 112/374 (29%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +          +     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSREEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|2177094|gb|AAB60787.1| UDP-MurNAc:L-alanine ligase [Escherichia coli]
          Length = 491

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSDTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQG 464


>gi|260853304|ref|YP_003227195.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257751953|dbj|BAI23455.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli O26:H11
           str. 11368]
 gi|323157842|gb|EFZ43945.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli EPECa14]
          Length = 491

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 124/398 (31%), Gaps = 45/398 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   + 
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +             AR+     + I E   S    +      ++P +A++T I
Sbjct: 144 AGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +          L   G   +  DD     L  +      +   ++G
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYG 251

Query: 252 KSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    D 
Sbjct: 252 FSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDD 311

Query: 311 DTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +  ++AL  F                P  G+        + G      ++      +   
Sbjct: 312 EAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWP 371

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             +++    PH   R   +  D   +     +  +          I      G    +L 
Sbjct: 372 DKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRSLC 426

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +     +          +   +   L   D+++V+ 
Sbjct: 427 RTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQG 464


>gi|237729160|ref|ZP_04559641.1| Murein peptide ligase [Citrobacter sp. 30_2]
 gi|226908889|gb|EEH94807.1| Murein peptide ligase [Citrobacter sp. 30_2]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 111/365 (30%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGEVKWGL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVVPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
             LL+
Sbjct: 443 QKLLD 447


>gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
 gi|151281756|gb|ABR90166.1| cyanophycin synthetase [Janthinobacterium sp. Marseille]
          Length = 853

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 119/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLAR-- 155
             ++A+ G+ GKTTT  ++   L   K                         P +     
Sbjct: 468 IPVVAVAGTNGKTTTVRLIAHILQGNKYRVGMTSTDGVYIENKRIDTGDCSGPRSARNVL 527

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIASAKAE 212
           M  DVD  + E      G +R      R ++AV+T I        +  S +E++A  K  
Sbjct: 528 MHPDVDAAVLETA--RGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRV 585

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--- 269
           I + +   GT  LN  D     +                 +  A  + +  +   +    
Sbjct: 586 IVQNVAPNGTAVLNAADPMVANMAGSCPGSVTFFAQDSNHAVLATHRAQGHRVLFQDGNV 645

Query: 270 -----SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                   E ++Q   + + H+G      +N +  +G    L  D +  ++ L  F    
Sbjct: 646 IVLSEGKFEHRIQLSDIPITHNGTVGFQVENAMAAIGAAWGLGLDWNVVLEGLRTFENSA 705

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    T+I + Y  NP +++A    +  +        I+  GD       
Sbjct: 706 SSTPGRFNIFSHKGATVIAD-YGHNPDAIEALTRAVEGMPAKRRMVVISGAGD-----RR 759

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            +         +       V L           G  +  L+D L  +    +++ + G  
Sbjct: 760 DEDLRRQ--TQILGDAFDDVILYEDQCQRGRADGEVLALLRDGLSNAKRTRFTQEIQGEF 817

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  + L  GD+ ++
Sbjct: 818 IAIDTALAKLEAGDLCLI 835


>gi|289809970|ref|ZP_06540599.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 217

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 25/149 (16%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R++ AL       I++S   N  S +AA++ L     H +G    +LG   +  + S  
Sbjct: 81  HRFQLALEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP- 134

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               LA  L+   I  ++  G     L  AL   I    +ETM+     +   +  GD+V
Sbjct: 135 ----LARYLTGDRI-RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPHVQPGDMV 187

Query: 448 VV---KSS---------NSCGFYRLINLL 464
           ++    +S             F RL   L
Sbjct: 188 LLSPACASLDQFKNFEQRGDVFTRLAKEL 216


>gi|114566364|ref|YP_753518.1| UDP-N-acetylmuramate--alanine ligase [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|123322290|sp|Q0AYQ7|MURC_SYNWW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114337299|gb|ABI68147.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 465

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 97/299 (32%), Gaps = 28/299 (9%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E   S    +      +RP+IA+IT +   HL  +  ++ I  A  +  E +   
Sbjct: 157 DYFVVEADESDASFLD-----LRPYIALITNVEDDHLDYYKSVDNIRKAFRQFVEQIRPE 211

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   L   D+F   L           +  +G+  + D+    W+     S  +V  +   
Sbjct: 212 GFAMLYGGDAFNRSLVKDLTLNK--RLLFYGEDLSNDYYFLNWESIGLGSHFDVYKRELG 269

Query: 281 M--EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                     G H A N L  +     L  +++    AL  FH    R +       Q  
Sbjct: 270 FLGRFELAVPGKHNALNALAAIASALELGLEMEPIKSALKNFHGARRRFQ----IQGQKA 325

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              + + Y  +P  ++A I                ++         +Q     L E L  
Sbjct: 326 LVTVVDDYAHHPTEIRATIDAARNFHSGR-----VIVVYQPHRYSRTQLLGRQLGEALIN 380

Query: 399 YN---ISHVWLSGFHV------LALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +   I+ V+ +G           +  A      H  Y    + +  ++     + D++
Sbjct: 381 ADLAIITEVYSAGEEAIPGISGEVVCQAAQSIGCHSVYIPQREEIIPYLLQICQENDLI 439


>gi|221194726|ref|ZP_03567783.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185630|gb|EEE18020.1| UDP-N-acetylmuramate--alanine ligase [Atopobium rimae ATCC 49626]
          Length = 470

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 99/353 (28%), Gaps = 34/353 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  M+   L                +             D+ + E  
Sbjct: 112 KTIAVAGTHGKTTTSSMIATMLDK---MDLDPSFLIGGVVEGYDTNGRNGSGDYFVCEAD 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           + P++ VIT I   HL ++  +E I     +    L+ + T+ +N D
Sbjct: 169 ES-----DGSFMYLTPNVIVITNIEADHLDHYGTLENIEKTFCDFMRLLDPSETVIINGD 223

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +  +  L         + + S+G S+  D+  R   +                 +     
Sbjct: 224 NPHWVELAR----STGRKVVSYGFSETCDYVCRARMRTQGIENPLSVTTPSGACIDVVLP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+      ++          +A       +G  +R+    +    T++D+    
Sbjct: 280 ASPGTHNIANACAALATADILGYDLSEAARALSQFKGARRRFTHVGDICGITVVDDY--- 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
                     + + +S         V+               DL        +  + +  
Sbjct: 337 ----GHHPTEIKATLSAALPLGFKRVICVFQPHRYSRTKDLADLFAHAFD-GVDTLLVMD 391

Query: 408 -------------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                        G  V +      +   V Y  +   L   +      GD+V
Sbjct: 392 VFSAGELPIPGISGKTVSSHVKDAGKVSDVRYIPSRHKLVDTLCELCRPGDLV 444


>gi|152990002|ref|YP_001355724.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
 gi|151421863|dbj|BAF69367.1| UDP-N-acetylmuramoylananine-D-glutamate-2,6- diaminopimelate ligase
           [Nitratiruptor sp. SB155-2]
          Length = 430

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/384 (11%), Positives = 104/384 (27%), Gaps = 58/384 (15%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK----------KTYACIGSYNN 145
             L    RL      I +TG+ GKTTT   +   L+ +                      
Sbjct: 45  QDLINRYRL-DTLKTIGVTGTNGKTTTAAAIYSYLNDLGLKAALQGTRGFFIEDEQLEKK 103

Query: 146 HIGVPLTLARMPV-------DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLS 198
            +  P  L  +            + + E+  S     +     ++  + V T I+  HL 
Sbjct: 104 SLTTPPILQTLYHMYTAKQQGATYFVMEV--SSHAIAQNRIEDLQFALKVFTNISQDHLD 161

Query: 199 NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF 258
               ++   + K+  F                       K      K   ++   + A +
Sbjct: 162 YHKTMQNYIATKSSFFMDEGSKLINK-----------DDKHIQYNPKGARTYSVEELATY 210

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           Q+  +   +  S +                 +++         +  +    +    +   
Sbjct: 211 QILAFSMQNGISAVLRFGNEMIDFHAPMIGLFNLYNVTAAISAVHMLTNLPLQQICEVTE 270

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
            F   +GR +     LN+    ++D ++  +         +          + +A+ G  
Sbjct: 271 HFAGVKGRMQ----ILNEEPLIIVDFAHTPDG--------MQKVFESFPGKKLVAIFGA- 317

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSET 429
              G         L   ++    + ++L+  +            +   +   + V     
Sbjct: 318 ---GGDRDRSKRALMGNVASRFCTKIYLTSDNPRSEDPKQIIEDIAKGIETDVFVEKIVD 374

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                     SL   +++++  K 
Sbjct: 375 RKEAVEKAFHSLQKDEILLILGKG 398


>gi|325335909|gb|ADZ12183.1| hypothetical protein RIA_1066 [Riemerella anatipestifer RA-GD]
          Length = 59

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI--APQEAFFAIKGPH 50
          MN  +T   + +      IG      +   + DSR I       F AIK   
Sbjct: 1  MN--YTARQIAEITGAKLIG-AGDKIIKHFAFDSRIIYSPKNTGFVAIKTKK 49


>gi|78777264|ref|YP_393579.1| hypothetical protein Suden_1066 [Sulfurimonas denitrificans DSM
          1251]
 gi|78497804|gb|ABB44344.1| hypothetical protein Suden_1066 [Sulfurimonas denitrificans DSM
          1251]
          Length = 331

 Score = 46.4 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 16/98 (16%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDF----ILHA 60
              + L   Q   I          I+ D+  +   + FFA          +    I  A
Sbjct: 1  MRLENFLALTQTTLINEPYVHSFENIAFDALKVKRGDLFFA----------YTTQEIPLA 50

Query: 61 VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          V+ GA  V+ +    A I    I     D +  AL KL
Sbjct: 51 VENGAYGVIFDKP--AQISDNEIAWIKADSLDNALKKL 86


>gi|289177343|gb|ADC84589.1| hypothetical protein BIF_00314 [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 300

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 6   TFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T   L                 V  ++ D  S+     F  + G   D    +  A +KG
Sbjct: 20  TLGMLADRYGYELSPKFSRAVTVTSLASDIDSVTAGSLF--MPGKRIDAAR-VAAASRKG 76

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT--IIAITG 115
           A  V++   M +S     IP+   D     + ++A         T  + AI G
Sbjct: 77  AYAVMLPKSMRSSDLEADIPLVYADPTPREIGQIASNMTGNPAGTLAVFAIAG 129


>gi|146342497|ref|YP_001207545.1| UDP-N-acetylmuramate--L-alanine ligase [Bradyrhizobium sp. ORS278]
 gi|166222960|sp|A4YZK2|MURC_BRASO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146195303|emb|CAL79328.1| UDP-N-acetyl-muramate:alanine ligase, L-alanine adding enzyme
           [Bradyrhizobium sp. ORS278]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 132/402 (32%), Gaps = 39/402 (9%)

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            GA +VVV+T +      L +     +  V  A   LA   RL+S    +AI G+ GKTT
Sbjct: 65  AGADVVVVSTAIKRDNPELMAARAQRIPVVRRA-EMLAELMRLKS---CVAIAGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L +       I     +              ++ + E   S           
Sbjct: 121 TTSMVAALLDAGGLDPTVINGGIIN---AYGTNARLGGGEWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +A++T + P HL +F   E +  A     E +   G   +  D    + L  K   
Sbjct: 173 LPADVAIVTNVDPEHLDHFKTFEAVQDAFRAFVENVPFYGFAVMCIDHPVVQALVGKIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQ 294
                I ++G +  AD +L         S  +V  +        +  ++V    G H A 
Sbjct: 233 R---RIITYGVNPQADVRLVDLTPMGGGSSFKVVFRDRKSGATHEISDIVLPMPGRHNAS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNAN 349
           N    + +   L    +   KA+  F   + R            ++      ++ +    
Sbjct: 290 NATAAIAVARELGLSDEAIRKAIGGFGGVKRRFTRTGEWNGVTVIDDYGHHPVEIAAVLK 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----W 405
            A   +   V++ + PH   R  ++  + C     + +  +          I  +    +
Sbjct: 350 AARESSNGKVVAVVQPHRYTRLQSLFEEFCTCFNDADAVVVADVYPAGEAPIEGIDRDHF 409

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + G      +D LP             L   ++     GD+V
Sbjct: 410 VLGLRAHGHRDVLP-------LPKAADLAGIVKDLAKPGDLV 444


>gi|154148410|ref|YP_001406306.1| hypothetical protein CHAB381_0726 [Campylobacter hominis ATCC
           BAA-381]
 gi|153804419|gb|ABS51426.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
          Length = 330

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 16  GHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
           G  +G      ++G +          AF A+     D    I  AV  GA  V+ + ++ 
Sbjct: 12  GEILGTPAISRISGFTFTPHKNCKNLAFIALNATQND----IKTAVLNGAYAVIFDKNL- 66

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
              G   I    V+D+  A+++L            + I+ 
Sbjct: 67  DLTGDDEIAYIKVNDINLAISRLITYFIALKSIKFVKISE 106


>gi|330828043|ref|YP_004390995.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
 gi|328803179|gb|AEB48378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas veronii
           B565]
          Length = 427

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 133/424 (31%), Gaps = 62/424 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIA 112
           +  A+ K A ++V +  +  +   L       V  V D+              ++  +IA
Sbjct: 50  LDEALLKQAHMIVASPGIALATPELKAAAECGVQIVGDI--------ELFVRETQTPVIA 101

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           ITGS GK+T   ++   ++              +IG P     +   +D  + EL    L
Sbjct: 102 ITGSNGKSTVTTLVGEMIAEAGLNV----GVGGNIGTPALEL-LKQPMDLCVLELSSFQL 156

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                 TH +R   +V+  ++  H+  + G+ +  +AK EI +  +              
Sbjct: 157 ----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHSKH------------- 199

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            +L  +  A  +  +    +S   D           + W+ +  +          +G H 
Sbjct: 200 -ILVNRDDAQTLPDVGQVWQSFGLDCNGYGRCLLDGRHWLTLHGEPLLAVDEMKIVGAHN 258

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   +       +  L  F     R    R          I++S   N  +
Sbjct: 259 QANALAAMALCDAVGIPRAAQLTVLRRFEGLPHRA---RFVREVNGVRWINDSKATNVGA 315

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
               ++ ++ +    +GR + + G   +  +          + L    I H++  G    
Sbjct: 316 T---LAAVAGVRESVKGRLLLLAGGQGKGQDFGP------IQALLGNQIDHMYCFGQDAE 366

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRL 460
            L   L           +             GD V++    +S             F  +
Sbjct: 367 VL---LALGEQTERVADLAAAVANAAVDAKPGDWVLLAPACASLDQFKSFEVRGDRFTEM 423

Query: 461 INLL 464
           +  L
Sbjct: 424 VLAL 427


>gi|224824594|ref|ZP_03697701.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
 gi|224603087|gb|EEG09263.1| UDP-N-acetylmuramate [Lutiella nitroferrum 2002]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 64/425 (15%), Positives = 122/425 (28%), Gaps = 53/425 (12%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I + V++G       T ++  I +  +P             LA          ++A+ G+
Sbjct: 67  IGNVVKRG-------TPLMEEIMNRGLPYISGP------QWLAENVLA--DKWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            GKTTT  ML   L                  G      G P           F + E  
Sbjct: 112 HGKTTTSSMLAWILEDAGLAPGFLIGGIPQNFGISARLPGAPALDPASR--SPFFVIEAD 169

Query: 169 MSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                            P  AV+  +   H   F+ +  I +    +   +   G +  N
Sbjct: 170 EYDTAFFDKRSKFVHYHPRTAVLNNLEFDHADIFADLAAIQTQFHHLVRTVPGNGRLISN 229

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             ++  + +        ++        + AD          +  +  +        V   
Sbjct: 230 GREASLDEVLEHGCWTPVERFGVEAGWQLAD-------VDDQGHFDVLLGGELQGRVRWD 282

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N L  +         V  AI AL+ F   + R +             + + +
Sbjct: 283 LLGEHNRLNALAAIAAARHAGVAVKDAINALARFQNVKRRME----VRGVAAGVTVYDDF 338

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL---SLYNISH 403
             +P ++    + L  +        I  +     +   S +  +   +     +L     
Sbjct: 339 AHHPTAI---ATTLEGLRRKVGRSPILAV-----LEPRSNTMKLGTMKAALPGALTEADQ 390

Query: 404 VWLSGFH--VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           V+  G +      +   P          ++ L   I +    G  V+V  SN  GF  + 
Sbjct: 391 VFCYGANLGWDPAEALAPLGDKAASFNDLERLIAAIVARAEPGSHVLV-MSNG-GFGGIH 448

Query: 462 NLLLE 466
             LL+
Sbjct: 449 QKLLD 453


>gi|58038644|ref|YP_190608.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352635|sp|Q5FUJ4|MURC_GLUOX RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|58001058|gb|AAW59952.1| UDP-N-acetylmuramate--alanine ligase [Gluconobacter oxydans 621H]
          Length = 477

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 75/417 (17%), Positives = 129/417 (30%), Gaps = 52/417 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD    A   G A +VV +T +      +      +  V  V  A   LA   RLR   
Sbjct: 59  GHD----AANLGDAQVVVTSTAVKKDNPEVVAARAKLIPV--VRRA-EMLAELMRLRWS- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +AI G+ GKTTT  ++   L   +     I                    D+ + E  
Sbjct: 111 --VAIGGTHGKTTTTSLVACVLEHARLDPTVINGGIIE---AYGTNTRMGSGDWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   IAV+T + P HL ++   E + +   +    +   G   L  D
Sbjct: 166 ES-----DGSFLRLPAVIAVVTNMDPEHLDHWGTEEAMQAGYDQFVSNIPFYGFAVLCVD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSM 281
               + +  +   L    + ++G S  AD +  K              +  +     ++ 
Sbjct: 221 HPQVQQMIPR---LSDHRVITYGFSPQADIRAEKVVMDKRGATFEVVVTNRQRNRSRRAG 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G+H   N L  + +   +         AL+ F   + R         +     
Sbjct: 278 PFRLPMLGHHNVLNSLAAIAVALEMEISDSVIASALTTFKGVKRRFT----RTGEYNGIS 333

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  + A           +V++ + PH   R   +  + C     + +  +  
Sbjct: 334 IVDDYGHHPVEIAAVLKAARQAGARNVIAVMQPHRYSRLKVLFNEFCTCMNDADTVIVAD 393

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
                   I      G    AL + L    H           L   I +    GD V
Sbjct: 394 VYAAGETPIE-----GAGRDALVEGLRDRGHRSVVPLPDPAHLAEMINAIAKPGDYV 445


>gi|238020915|ref|ZP_04601341.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
 gi|237867895|gb|EEP68901.1| hypothetical protein GCWU000324_00812 [Kingella oralis ATCC 51147]
          Length = 443

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 110/359 (30%), Gaps = 45/359 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL- 153
           L  L    R +    IIAITGS GKTTT  ++                   +IG P+   
Sbjct: 99  LADLLRHQRDQ----IIAITGSNGKTTTTSLVGHLCQQSGLD----TVVAGNIGTPVLDA 150

Query: 154 --ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              R     D  + EL    L      T  +    A    I+  HL+ +  + + A  K 
Sbjct: 151 WLQRQGKSADVWVLELSSFQL----ETTPCLAAAAAACLNISEDHLNRYDDLLDYARTKD 206

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           +IF G        LN DD F   +    H    +T Y         +         ++  
Sbjct: 207 QIFNGCRTQ---ILNADDPFCRAM----HRPEQQTRYFSLAQAADYWLDPVSGSLKQRDS 259

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             +      ++  H+      A  +   +GI            K             R  
Sbjct: 260 DFMAQSQIPLQGNHNTANALAALALCEAIGIPRSELVQHIQTFKG---------LPHRVE 310

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +     ID+S   N  +  AAI            + + + G   +  + +      
Sbjct: 311 KIGAKDGVVYIDDSKGTNVGATVAAI-------AGLPQKIVLIAGGQGKGQDFAP----- 358

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +       V+L G     +   L  R++   + +T+        ++   GD+V++
Sbjct: 359 -LASVLQDKARAVFLIGVDAPKIAAELAARNVPHQFCDTLPQAVAAAHATAQAGDIVLL 416


>gi|325293467|ref|YP_004279331.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
 gi|325061320|gb|ADY65011.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Agrobacterium sp.
           H13-3]
          Length = 469

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 114/378 (30%), Gaps = 42/378 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L +  +
Sbjct: 82  PHWSVDLARAAGVEIIGDIELFIRERRAHAPDCPFIAITGTNGKSTTTALIAHILKASGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG  +     P    F + E     +     L   + P   ++  + P 
Sbjct: 142 D----TQLGGNIGTAVLSLDPPKAQRFYVVECSSYQID----LAPTINPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G        +   D  +  L A         +    K   
Sbjct: 194 HLDRHGTMQHYADVKERLVAGSGT----AIVGVDDSYSTLIADRIERAGVKVERISKRNV 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               L        ++          ++ +    G H AQN    +     +    +    
Sbjct: 250 VSEGLYAEGSRILRAHGGKSSLLVDLDGIQTLRGSHNAQNAAAAIAACLAVGVSEEDVRA 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L  F   + R    +    +G  T +++S   N  +   A+S   +I     G   A  
Sbjct: 310 GLKSFPGLKHRM---QPVGRRGNVTFVNDSKATNADAAAPALSSYERIYWIAGGLPKA-- 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G +  +          L   ++       +L G         L  ++    S T+D    
Sbjct: 365 GGIASL--------APLFPRIAKA-----YLIGEAAAEFAATLGEAVPYEISGTLDKAVQ 411

Query: 436 FIQSSLVD----GDVVVV 449
              +        G +V++
Sbjct: 412 HAAADAEKDATAGSIVML 429


>gi|291619056|ref|YP_003521798.1| Mpl [Pantoea ananatis LMG 20103]
 gi|291154086|gb|ADD78670.1| Mpl [Pantoea ananatis LMG 20103]
 gi|327395390|dbj|BAK12812.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase Mpl [Pantoea ananatis AJ13355]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 117/371 (31%), Gaps = 40/371 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M    L +       I       GVP             F + E 
Sbjct: 109 VLAVAGTHGKTTTAGMAAWILEACGLEPGFIIG-----GVPGNFDVSAKLGKSPFFVIEA 163

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  +  I      +   +   G I L
Sbjct: 164 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLRAIQKQFHHLVRIVPGQGKILL 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
              D   + + A          +S  +        +  K   + S  EV     K  EV 
Sbjct: 224 PEHDHNLKQVMA-------MGCWSEQEHVGDGGHWQAKKLTPDASRWEVLLAGEKVGEVN 276

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +    + A +AL  F     R +          +    +
Sbjct: 277 WGLVGEHNMHNGLMAIAAARHVGVKPEDASQALDSFINARRRLELRGEVNGIKIY----D 332

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNI 401
            +  +P ++ A +S L      G  R +AVL    +  +MG         LA        
Sbjct: 333 DFAHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMKMGVNKNELAPSLAR------A 385

Query: 402 SHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
             V+L         V  + +A  +    H S  +D L   I  +   GD ++V  SN  G
Sbjct: 386 DEVFLFQPSHIPWQVADVAEACMQ--PAHCSADIDTLVETIAKTAQPGDSILV-MSNG-G 441

Query: 457 FYRLINLLLEE 467
           F  +   LL+ 
Sbjct: 442 FGGIHQKLLDR 452


>gi|323142002|ref|ZP_08076853.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413534|gb|EFY04402.1| UDP-N-acetylmuramate--L-alanine ligase [Phascolarctobacterium sp.
           YIT 12067]
          Length = 464

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 130/398 (32%), Gaps = 39/398 (9%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A  VV++T +  +   L       IPV    DVL A+            A  +A+ G+ G
Sbjct: 69  AEAVVISTAIHPNNPELMEARKRGIPVLHRSDVLAAVMN---------AADGVAVAGAHG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M++   +        I             + +  +   G     ++   E    
Sbjct: 120 KTTTSAMISCIAAESGIDPTVIIGGEV--------SSLGGNARNGAGRFVVAEADESDGS 171

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + P++AV+T I   HL ++   E I  A  +    +++ G   L +D++    L A+
Sbjct: 172 FLKLYPYLAVVTNIEDDHLDHYGTEENIYQAFKQFVGNIKEGGKAVLCFDNAKVRRLAAE 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +    I       + + AD+  R      + +  ++  +G+ +  VH  +         M
Sbjct: 232 TDKEVITYGV---EGEGADYIARDISYGVDGTSYKLYYKGEFVTEVHLIVPGRHNVLNSM 288

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY------NANPAS 352
                +         I A         R    +  +N  +       +          A 
Sbjct: 289 GAFAAAHEMGIATDKILASLKKFGGAKRRFETKGKVNGVWVVDDYAHHPTEIGVTLKAAR 348

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                 +L    PH   R   +  + CE  +      +      S   I     +G   +
Sbjct: 349 QTKPERLLCVFQPHRYTRTKLLFSEFCECFKDCDELILTDIYAASEEAI-----TGVSSM 403

Query: 413 ALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L + +       V Y   +     +++  +  GD+V+
Sbjct: 404 HLAEGIKAATGQEVLYIGKLTKAEEYLERVVRPGDLVM 441


>gi|315179012|gb|ADT85926.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii NCTC 11218]
          Length = 456

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 100/349 (28%), Gaps = 22/349 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPRQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K C + S   V  QG+ +  V    
Sbjct: 223 DAALADVLRRGC-------WSETEFSGEQGEWQAEKICKDGSQFHVLHQGERVGTVTWD- 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 275 -LVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGTENGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +  +   +  G R  +         +    H +            V+L  
Sbjct: 334 -----PTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAAAD-SVYLFQ 387

Query: 409 F-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             ++      +        H S+ M      I      GD ++V  SN 
Sbjct: 388 PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAKPGDQILV-MSNG 435


>gi|251793118|ref|YP_003007844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247534511|gb|ACS97757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Aggregatibacter aphrophilus NJ8700]
          Length = 457

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 88/322 (27%), Gaps = 33/322 (10%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              + + E                   P   +I  I   H   F  ++ I      +   
Sbjct: 154 KSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIINNIGFDHADIFEDLKAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    D+   E   A          +S  +    D +    +   + +   V  
Sbjct: 214 IPNNGRILSFADEQSVEQTLA-------MGYWSECQYVGKDQEWYAERITHDCTEFSVFH 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +G+ +  VH  I           L  ++       +  KA           +R     N 
Sbjct: 267 KGEKVAEVHWNIVGEHNM--RNGLMAIAAAHHAGVSIQKACEALGSFINAKRRLEVKGNL 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAE 394
              T+ D+  +         I           G    +L  + E    +     H D   
Sbjct: 325 HDITVYDDFAHH-----PTEIRATLTALRDKVGANARILA-VLEPRSNTMKMGVHKDEIA 378

Query: 395 VLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                    V+L            + DAL +     +S+ +  L   I +     D ++V
Sbjct: 379 PALE-KADVVFLFQPETIPWKVADIADALTQ--PAAHSDDLAALVNMIATEAKPTDHILV 435

Query: 450 KSSNSCGFY----RLINLLLEE 467
             SN   F     ++++ L ++
Sbjct: 436 -MSNGS-FGGIHQKILDALQKK 455


>gi|328952329|ref|YP_004369663.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452653|gb|AEB08482.1| UDP-N-acetylmuramate--L-alanine ligase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 477

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 130/395 (32%), Gaps = 36/395 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           +VV+++ +      L          L  L++  + A L +  T IAI G+ GKTTT  M 
Sbjct: 67  VVVISSAIGLDNPELKAAQAR---GLQILSRAQMLAMLMAGKTQIAIAGAHGKTTTTSMT 123

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
              L       + +          L    +    D+ + E   S          +  PH+
Sbjct: 124 ASVLRQGGLAPSVVIGGIVDS---LGGNAVLGPGDYFVAEADES-----DGSFLVFNPHV 175

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           AV+T +   HL ++  +  I    A+    ++  G +   YDD     L           
Sbjct: 176 AVVTNVDREHLDHYRDLAHIQEVFAKFIHQVQPGGAVVACYDDPNLRPLL----YGVQGR 231

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           + ++G     +++    +     S   +  Q K +  +   +         +    V   
Sbjct: 232 LITYGLKSGGNYRAAHIQVTGGGSSYTLLRQEKKLGQITIPLAGWHYVANSLAAAAVGFA 291

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ---- 362
                  I+A         R KR      +     + + Y  +P  ++A +  ++Q    
Sbjct: 292 LGLDFRDIQAGLAQTG---RIKRRFEIKGENQGVTVIDDYGHHPTEIRATLDAMAQAFAG 348

Query: 363 ------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                   PH   R  A+L D  ++ + +Q   +               + G     L  
Sbjct: 349 RRLVVAFQPHRFSRTQALLPDFFDIFQQAQLLFLTDIYSAGER-----VIHGLSGRDLYR 403

Query: 417 ALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  + H  V Y    + L   + + L  GD V+V
Sbjct: 404 GIREAGHTAVQYVGNREELAPELWNYLRRGD-VLV 437


>gi|291530453|emb|CBK96038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Eubacterium
           siraeum 70/3]
          Length = 438

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 107/343 (31%), Gaps = 40/343 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II ITG+ GK+TT  ++   +    K    IG+       PL          
Sbjct: 101 FLRFCDNMIIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVP---PLERREEFTKDC 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L           P +AV+  I P HL +++      +AK  IF    +  
Sbjct: 158 VIVCEMSCHQL-----EYVKASPDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNEND 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T+ +  +   +   KA+    G                                    + 
Sbjct: 213 TLIIGEEVKQYADTKARVITAG---------------FSCGDIGTRNGGIFIGDEFYPAD 257

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H   N+ + +   +     V   + AL  F+  E R +             
Sbjct: 258 VIDTKLKGEHNLYNIAIAIYAATKAGCTVKQCLDALPQFNGLEHRLEYVCMLNGAE---Y 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYN 400
           I++S +  P +  AA+                ++G M          + +L++ LS   +
Sbjct: 315 INDSISTAPQTAIAALKAY-------PDTDTLIIGGM-----DRGIPYDELSDWLSGDTS 362

Query: 401 ISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
           + ++ +       + + +    + + Y++ M+    + +    
Sbjct: 363 VRNLIILPDSGKRVAEKVTNPLVKLIYADDMEQAVKYAKQVTK 405


>gi|332298510|ref|YP_004440432.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
 gi|332181613|gb|AEE17301.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           brennaborense DSM 12168]
          Length = 511

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 110/351 (31%), Gaps = 18/351 (5%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 ++A IIA+TGS GK++T   +   L +        G+       PLT       
Sbjct: 127 SVFLRFTQAPIIAVTGSKGKSSTVSAIHYGLCAAGFEAFLGGNITVS---PLTFLDKTDG 183

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL  S          L++PH+AV+T I P H + +  +E+  + K  I+   + 
Sbjct: 184 TTPVVLEL-SSWQLADLRGRRLLKPHVAVLTKIVPDHQNWYGSMEKYVADKKLIYADQDA 242

Query: 220 TGTIFLNYDDSFFELLKAKSH----ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           +       DD + +   A+++      G   + +           + + +     +   +
Sbjct: 243 SCWTVCAADDEWGDAFAAETNGTVLRYGGGKLPAAECGAWIGKNGKGYVRLPAARFSGGR 302

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                   V   +    +      L    +++       +  ++     G   R      
Sbjct: 303 FADGEPHEVLDTLAVPGSHMKTNALNAALVMSLLGVAPEQTETILARWPGIQHRLEYFHT 362

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                    S      S        +  S         + G     G       + LA  
Sbjct: 363 WQLPGAKGRSVKFYNDSAATVPEAAAAASQAFGKPVHLLCG-----GTDKNLDFLPLART 417

Query: 396 LSLYNISHVW-LSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLV 442
           L     + V+ L+G     L   L ++  + Y    E++  L   ++ +L 
Sbjct: 418 LRSQPPASVYALAGTGTDKLLPLL-KASDIRYEGPFESLAQLLSALKRNLQ 467


>gi|306843220|ref|ZP_07475831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
 gi|306286585|gb|EFM58162.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. BO2]
          Length = 467

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGVDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|260770966|ref|ZP_05879895.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
 gi|260614203|gb|EEX39393.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio furnissii CIP 102972]
          Length = 456

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 100/349 (28%), Gaps = 22/349 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML          Y         +G     AR+   + F +     
Sbjct: 105 VLAVSGTHGKTTTSSMLA--WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  +E I      +   +   G I     
Sbjct: 163 DSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDDLEAIKRQFHHLVRTVPGNGRILAPRQ 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+    +  +         +S  +      + +  K C + S   V  QG+ +  V    
Sbjct: 223 DAALADVLRRGC-------WSETEFSGEQGEWQAEKICKDGSQFHVLHQGERVGTVTWD- 274

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+   L  ++       T   A           +R      +   T+ D+  + 
Sbjct: 275 -LVGEHNVNNALMTIAAARHVGVTPDLACEALGSFINTKRRLELKGTENGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                  AI +  +   +  G R  +         +    H +            V+L  
Sbjct: 334 -----PTAIELTLEGLRNKVGDRKIIAVLEPRSATMKLGVHKETLAASLAAAD-SVYLFQ 387

Query: 409 F-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
             ++      +        H S+ M      I      GD ++V  SN 
Sbjct: 388 PSNIPWAVQDVADQCSQPAHVSDNMAEFVAQICQEAQPGDQILV-MSNG 435


>gi|87199156|ref|YP_496413.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|109892716|sp|Q2G994|MURC_NOVAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|87134837|gb|ABD25579.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 474

 Score = 46.4 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 130/396 (32%), Gaps = 46/396 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V +     IPV     V  A   LA   RL+S    +A+ G+ GKTTT  M+   L
Sbjct: 80  DNPEVVAALENRIPV-----VRRA-EMLAELMRLKS---TVAVAGTHGKTTTTSMVACLL 130

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +       I     +            D D+ + E   S           +   +AV+T
Sbjct: 131 DAGGIDPTVINGGIINS---YGSNARLGDSDWMVVEADES-----DGSFLRLDGTLAVVT 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL ++   E + SA  E  E +   G   L  D    + +  K   +  + + ++
Sbjct: 183 NIDPEHLDHYGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAIIPK---VRDRRVVTY 239

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV------VHHGIGYHMAQNMLMTLGIVS 304
           G S  AD +          +     L+ +               G H  QN L  + +  
Sbjct: 240 GFSAQADVRGEGVTPIPGGNRFTAVLRQRDGSFRRIEGIELPMPGRHNVQNALAAVAVAV 299

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +    +      + F   + R  +            I + Y  +P  +       + ++
Sbjct: 300 EMGVSDELIRGGFAKFGGVKRRFTKVGEVDIGSGAVTIIDDYGHHPVEI------RAVLA 353

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLA 413
              EG +  V+  +          H+D  +     +   V+ +           G    A
Sbjct: 354 AAREGVQGRVIAVVQPHRFTRLRDHMDEFQGAFN-DADVVYAAPVYPAGEQPIEGVDSAA 412

Query: 414 LKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           + + +    H   H +   D L   + +++  GD+V
Sbjct: 413 MVEGIKARGHRSAHLTTGADELAKELAATVQAGDMV 448


>gi|88858533|ref|ZP_01133175.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
 gi|88820150|gb|EAR29963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (Murein peptide ligase)
           [Pseudoalteromonas tunicata D2]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 56/373 (15%), Positives = 131/373 (35%), Gaps = 37/373 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIF 165
            + ++A+ G+ GKTTT  ML   L          IG    + G+   L        F + 
Sbjct: 102 NSWVLAVAGTHGKTTTASMLAWILEYAGLKPGFLIGGIVQNFGLSARLGE----TPFFVI 157

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  V   P   ++  +   H   F+ +  I      +   + + G +
Sbjct: 158 EADEYDTAFFDKRSKFVHYLPRTLIMNNLEFDHADIFADLAAIERQFHHLMRIVPQNGKV 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               D++  + + A+         +S  +    D++  +       +++         +V
Sbjct: 218 IYPSDEAALQRVIAQGC-------WSETEQLGQDWRY-ELVNPDSSAFLVKLAGQTLGQV 269

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +G H  +N +M +     +   V+++I+AL+ F   + R +      +      + 
Sbjct: 270 NWQAMGEHNVKNAMMAIAAARHVGVPVESSIEALAEFISPKRRMELKANIAD----ICVY 325

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYN 400
           + +  +P ++K  ++ L   +  G  +  A+L    +  +MG    +    LA       
Sbjct: 326 DDFAHHPTAIKTTLAGLR--AKVGLQKIHAILEPRSNTMKMGVHKTTLLDSLA------G 377

Query: 401 ISHVWLSGF-HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF-- 457
              V++     +        +       + +  +   + +    GD +++  SN  GF  
Sbjct: 378 ADEVYVFEPKQLDWSLQQAAQDAGAQCYDDVAAIVSDVVAKADKGDQILI-MSNG-GFEG 435

Query: 458 --YRLINLLLEEF 468
              ++I  L  ++
Sbjct: 436 IHEKIIKALQSKY 448


>gi|312140141|ref|YP_004007477.1| UDP-N-acetylmuramate-l-alanine ligase murc [Rhodococcus equi 103S]
 gi|325676978|ref|ZP_08156650.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
 gi|311889480|emb|CBH48797.1| UDP-N-acetylmuramate-L-alanine ligase MurC [Rhodococcus equi 103S]
 gi|325552278|gb|EGD21968.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodococcus equi ATCC
           33707]
          Length = 498

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 67/451 (14%), Positives = 131/451 (29%), Gaps = 64/451 (14%)

Query: 53  GHDFILHAVQK---GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAA 102
           GHD    A+     G   VV     +              IPV         L  L    
Sbjct: 60  GHD--ASALDLLPGGPTAVVTTHAAIPKDNPELVEAAARGIPVILRP---AVLASLMQGH 114

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-D 161
           R       + ++G+ GKT+T  ML        +      S+     +            D
Sbjct: 115 R------TLLVSGTHGKTSTTSML----VVALQHCGFDPSFAVGGELNEAGTNAHHGTGD 164

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E   S    +++      P + ++T +   HL  F   +       +    +   G
Sbjct: 165 VFVAEADESDGSLLQY-----DPDVVIVTNVEADHLDFFGTSDAYVQVFDDFVARIAPGG 219

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGK------------SKNADFQLRKWKQCSEQ 269
            +    DD     L  ++   G   +   G                 +    + +     
Sbjct: 220 LLVACLDDPGSAALARRTIEAGRDDVRVVGYGTADGVAAAGPVPVGVELVSWEARDTGGV 279

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           + +    +  +  +     G HMA N L  L       A +D  ++ L+ F     R + 
Sbjct: 280 AQIRFAGEDAARTLRLGVPGKHMALNALAALLAGRGAGASIDELLEGLAGFGGVHRRFQF 339

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                 +     + + Y  +P  ++A +   S +          V+     +   + +F 
Sbjct: 340 ----TGRERGVRVFDDYAHHPTEVRAVLGAASDLVDDDRQPGRVVVVFQPHLYSRTVTFA 395

Query: 390 IDLAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  E L L     V +            G     +  ++  +  VHY      +   + 
Sbjct: 396 QEFGEALDLA--DEVVVLDVYGAREEPLPGVSGALVAQSV--TKPVHYQPDRSQVPRQVA 451

Query: 439 SSLVDGDVVVVKSSNSCGF--YRLINLLLEE 467
           S    GDVV+   +        ++++ L   
Sbjct: 452 SLAEPGDVVITMGAGDVTMLGGQILDALRAR 482


>gi|238756426|ref|ZP_04617735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
 gi|238705356|gb|EEP97764.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia ruckeri ATCC 29473]
          Length = 459

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 69/366 (18%), Positives = 115/366 (31%), Gaps = 32/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M+T         Y          G     AR+     F I     
Sbjct: 105 VVAVAGTHGKTTTAGMVT--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I L  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G          K       ++          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQEFVGDTGSWSA------KKVTVDASAYQVFLDNELVGEVNWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +AL+ F       +R          T+ D+   A
Sbjct: 277 GEHNMHNGLMAIAAARHVGVQPADACRALADF---INARRRLELRGEANGVTVYDDF--A 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +  +   A     +    G  R +AVL    +  +MG         L           V+
Sbjct: 332 HHPTAILATLAALRGKVGGTARILAVLEPRSNTMKMGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           L         V  + DA  +     ++  +D L   I  +   GD ++V  SN  GF  +
Sbjct: 386 LFQPQHIPWQVAEVADACIQ--PASWNADIDTLVEMIVKTAQPGDHILV-MSNG-GFGGI 441

Query: 461 INLLLE 466
            N LLE
Sbjct: 442 HNKLLE 447


>gi|159038978|ref|YP_001538231.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
 gi|189029031|sp|A8LX80|MURC_SALAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157917813|gb|ABV99240.1| UDP-N-acetylmuramate--alanine ligase [Salinispora arenicola
           CNS-205]
          Length = 511

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 140/375 (37%), Gaps = 36/375 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  M+T+ L                    +         ++ + E  
Sbjct: 121 RTVAVAGTHGKTTTTSMVTMVLQQAGVD---PSFVIGGEISEVGSGAHHGTGEYFVVEAD 177

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S          + RP +++IT I   HL+ +  +  + +A A+     +  G +    D
Sbjct: 178 ES-----DRSFLIYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFVVTCAD 232

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHG 287
           D+    L     A G + +Y++G S +AD +L +    +       ++ G+S  E     
Sbjct: 233 DAGSRRLAETLRAEG-RRVYTYGTSTDADLRLTEMASSTRGIRYLAEVDGRSLGEFRLPV 291

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G HM  N    +    +L   +D A  AL+ F     R +R   A N       + +Y+
Sbjct: 292 PGRHMGLNSASAVLAAYLLGLPLDAAEAALAAFPGVRRRFERKGVADNVL--VYDEYAYH 349

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             P ++      L  +       R+ V+     +   ++    ++AE L++     + L 
Sbjct: 350 PTPIAL-----ALRTLREVAGDGRLIVVFQPYRL-YRTRDLQTEIAEALAIA--DELVLL 401

Query: 408 -----------GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS---S 452
                      G    AL +A+P  +    + ++ +   + +      GDVVV      S
Sbjct: 402 EVFGPGELREPGEGSAALIEAVPLPADRKVFVDSWEAAPVEVARRARPGDVVVTMGAPPS 461

Query: 453 NSCGFYRLINLLLEE 467
           +  G  +L++ L   
Sbjct: 462 SLMG-EQLLDALSAR 475


>gi|16128084|ref|NP_414633.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|89106974|ref|AP_000754.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170021553|ref|YP_001726507.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079730|ref|YP_001729050.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188495590|ref|ZP_03002860.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|238899492|ref|YP_002925288.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|254037506|ref|ZP_04871583.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|256025405|ref|ZP_05439270.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia sp. 4_1_40B]
 gi|300905500|ref|ZP_07123264.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300919646|ref|ZP_07136137.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300923127|ref|ZP_07139187.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300949891|ref|ZP_07163854.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300955957|ref|ZP_07168290.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|301028574|ref|ZP_07191804.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|301303808|ref|ZP_07209928.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|301330128|ref|ZP_07222797.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301646403|ref|ZP_07246285.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|307136692|ref|ZP_07496048.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli H736]
 gi|331640544|ref|ZP_08341692.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|127536|sp|P17952|MURC_ECOLI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189028987|sp|B1IR87|MURC_ECOLC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620033|sp|B1XC68|MURC_ECODH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509769|sp|C4ZRI6|MURC_ECOBW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|40859|emb|CAA38868.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli]
 gi|42056|emb|CAA36868.1| (UDP-N-acetylmuramate: L-alanine ligase) (AA 1-491) [Escherichia
           coli]
 gi|1786279|gb|AAC73202.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. MG1655]
 gi|21321972|dbj|BAB96659.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169756481|gb|ACA79180.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli ATCC 8739]
 gi|169887565|gb|ACB01272.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli str. K-12
           substr. DH10B]
 gi|188490789|gb|EDU65892.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 53638]
 gi|226840612|gb|EEH72614.1| UDP-N-acetylmuramate-alanine ligase [Escherichia sp. 1_1_43]
 gi|238863750|gb|ACR65748.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia coli BW2952]
 gi|260450702|gb|ACX41124.1| UDP-N-acetylmuramate/alanine ligase [Escherichia coli DH1]
 gi|299878385|gb|EFI86596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 196-1]
 gi|300317177|gb|EFJ66961.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 175-1]
 gi|300402650|gb|EFJ86188.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 84-1]
 gi|300413286|gb|EFJ96596.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 115-1]
 gi|300420582|gb|EFK03893.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 182-1]
 gi|300450723|gb|EFK14343.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 116-1]
 gi|300840935|gb|EFK68695.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 124-1]
 gi|300843875|gb|EFK71635.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 78-1]
 gi|301075373|gb|EFK90179.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 146-1]
 gi|309700302|emb|CBI99590.1| UDP-N-acetylmuramate:alanine ligase [Escherichia coli ETEC H10407]
 gi|315134785|dbj|BAJ41944.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia coli DH1]
 gi|315253165|gb|EFU33133.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli MS 85-1]
 gi|315616130|gb|EFU96749.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli 3431]
 gi|323939869|gb|EGB36069.1| UDP-N-acetylmuramate-alanine ligase [Escherichia coli E482]
 gi|331040290|gb|EGI12497.1| UDP-N-acetylmuramate--alanine ligase [Escherichia coli H736]
 gi|228660|prf||1808265A murC gene
          Length = 491

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      +   +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + M V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           D +  ++AL  F                P  G+        + G      ++      + 
Sbjct: 310 DDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQG 464


>gi|239947262|ref|ZP_04699015.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239921538|gb|EER21562.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 105/338 (31%), Gaps = 34/338 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+TG+ GK+TT  +++  L+S    Y   G+         +  R     D  + EL
Sbjct: 104 LNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGV------SALRAKASKDGYVLEL 157

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L  ++  T      IAV+  I P HL     +    +AK++IF+ ++K     +N 
Sbjct: 158 SSFQLDLVKTFTA----KIAVLLNITPDHLDRHQDMTGYIAAKSKIFDRMDKKSYAVINI 213

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           D+ +   +           +  F  +K  +          ++          S      G
Sbjct: 214 DNDYCRKIFMLLQQEQRIKLIPFSVTKILEN---GILVVDDKIKDNDISYKLSFNKNLQG 270

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +  +          +  I+  +    I+++S F     R    +   +    +  ++S  
Sbjct: 271 LHNYENIAASYA--VAKIIGVEPKKIIESISSFQSLPHRM---QYIGSINNISFYNDSKA 325

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  S   +I  L  I            G     G      +           I   +  
Sbjct: 326 TNAISAVQSIKALDNI-------YWLAGGTPKGGGIEEIKPYF--------SKIKKAYFY 370

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
           G       +     +     + ++  F       + GD
Sbjct: 371 GQAKEIFANTAKNIVDFVICDDLEQAFDLAYKDAI-GD 407


>gi|78187343|ref|YP_375386.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Chlorobium luteolum DSM 273]
 gi|78167245|gb|ABB24343.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium luteolum DSM
           273]
          Length = 491

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 113/361 (31%), Gaps = 33/361 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKTTT  ++   L S       +                  +  F + E  
Sbjct: 122 TSIVVAGTHGKTTTTSIIAWLLESGGLKPGFLVGGIPENFGIGCRPSGRSEAGFFVSEGD 181

Query: 169 MSHLGEIRFLTHL--VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                     +     RP IA+I  +   H   F+ +EEI  +   +   +   G + +N
Sbjct: 182 EYDTAFFDKRSKFLLYRPDIALINNVEFDHADIFNSLEEIKRSFRLLVNLIPSKGALIVN 241

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     + A         + +FG ++  D+         E S  +V  +G  ++  H 
Sbjct: 242 GDDPVAMEVAA----GARCRLETFGLTEGCDWMAGNIDVGEEGSTFDVYYKGSLLQRFHA 297

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +  +      +    V+ L       +             +R            + E +
Sbjct: 298 PLFGNYNITNTVASIAVATLAGMTLEQV--EEGLPGFLRPKRRMETIGTFEGNITLVEDF 355

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P +++  +  + +  P              E    + + +I   E+ + +  + V +
Sbjct: 356 AHHPTAIRVTLEAIRERWPRRRILTCF------EPRSNTTTRNIFQDELAACFGPAEVVV 409

Query: 407 SGF-------------HVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVV 447
            G                  LK+AL R     +    D       +  F+  +L   DVV
Sbjct: 410 MGKVHRPERYGPGGSLDTGKLKEALEREGKTVFLAGADPDDYPGDIVRFLHENLQPNDVV 469

Query: 448 V 448
           +
Sbjct: 470 L 470


>gi|309812642|ref|ZP_07706386.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
 gi|308433337|gb|EFP57225.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Dermacoccus sp.
           Ellin185]
          Length = 501

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 111/392 (28%), Gaps = 46/392 (11%)

Query: 97  KLAVAARLRSK-ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R R   A  + ITG+ GKTT   ML   L +             ++G+PL  A 
Sbjct: 127 ELAWRMRPREGGAPWLTITGTNGKTTAVTMLESMLKAQGLR----AVAAGNVGMPLLEAV 182

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +     D    EL    L   R     V P+ +    +AP H+      EE    K  ++
Sbjct: 183 LHPQPYDVIAVELSSFQLHWSR----TVSPYASCCLNVAPDHIDWHGSYEEYKRQKGRVY 238

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E  +      ++   +   +  A+         ++ G    +   +            E 
Sbjct: 239 ERTQVACVYNVDDPATEAMVEDAEVVDGCRAIGFTLGTPGPSMVGIVDDVLADRAFIAER 298

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE-GRGKRYRCA 333
           +     + ++        A + +      + L       + A+         +  R    
Sbjct: 299 RTSAAELAILSDLGPNASAPHYVADALAAAALARSYGVTLAAVRQGLVDYTPQPHRMASV 358

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    +D+S   NP + +A++     +     G            G           
Sbjct: 359 AEVGGVRWVDDSKATNPPAAQASLQAFDPVVWIAGGLLK---------GAEVDDLVR--- 406

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSETMDGLFLFIQSSL----VDG 444
              +   +    L G     + DAL          V  +   D       ++       G
Sbjct: 407 --ANASRLRAAVLLGRDRGIIADALAAHAPQVPVTVIETSDADEAMREAVAAANAAAQRG 464

Query: 445 DVVVVK------------SSNSCGFYRLINLL 464
           D V++              +    F   +  L
Sbjct: 465 DTVLLAPAAASLDMYASYGARGDAFADAVAAL 496


>gi|163732131|ref|ZP_02139577.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
 gi|161394429|gb|EDQ18752.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter litoralis Och
           149]
          Length = 468

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 71/408 (17%), Positives = 121/408 (29%), Gaps = 48/408 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A      +V+ +     +    +    G+  V  A   LA   RL+S    IA+ G+
Sbjct: 68  IEDAE----VVVISSAIKPGNAELDAARASGLPIVRRA-EMLAELMRLKSN---IAVAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +           N  I           + ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDA---GEFDPTVVNGGIIHAYGSNARKGEGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GTFNRLPATIAIVTNIDPEHMEHWGDFDTLRQGFLDFVSNIPFYGVAVCCTDHPEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            K     + T     ++      LR     +              +      G H   N 
Sbjct: 232 GKITDRRVITYGFNAQADVRAVNLRYASGVAHFDVALQAEGIVIEDCSLPMPGDHNVSNA 291

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  + +   L    +    AL+ F     R  R            I + Y  +P  + A 
Sbjct: 292 LSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVGEIDG----VTIIDDYGHHPVEIAAV 347

Query: 357 ISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
           +    Q           PH   R  ++  D C     +               I+ V+ +
Sbjct: 348 LKAARQATEGRVIAVHQPHRYSRLSSLFDDFCACFNDADV-----------VGIAEVYAA 396

Query: 408 GFHV------LALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVV 447
           G           L   L R  H H    +  D L   ++     GD+V
Sbjct: 397 GEDPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLERLVREQTRPGDMV 444


>gi|75908537|ref|YP_322833.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
 gi|109892691|sp|Q3MAP8|MURC_ANAVT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|75702262|gb|ABA21938.1| UDP-N-acetylmuramate--L-alanine ligase [Anabaena variabilis ATCC
           29413]
          Length = 494

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 58/400 (14%), Positives = 118/400 (29%), Gaps = 40/400 (10%)

Query: 68  VVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T + ++         L  P+    DVL AL               +A+ G+ GKTT
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAALIN---------DYHSVAVAGTHGKTT 146

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L         I     +               + + E   S           
Sbjct: 147 TSSMIGYMLLEAGLDPTIIVGGEVN---AWEGNARLGQSPYLVAEADES-----DGSLVK 198

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT I   H  ++  +EE+        +G +                  A    
Sbjct: 199 HAPEIGIITNIELDHPDHYDTLEEVVDIFQTFAKGCKTLIGSVDCATVRELLRTAASDRQ 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
               T      ++          +    + +  +       +    +  H   N L  + 
Sbjct: 259 QPTITYSLHQDTEADYTVTNIDCRADGTTALVWEKGKALGVLKLKLLSRHNLSNALAAVA 318

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  ++  +     K ++ F     R             T ID+   A+  S   A    +
Sbjct: 319 VGRLVGLEFGEIAKGIAGFEGARRRF---EFRGEVDGITFIDDY--AHHPSEIRATLAAA 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVL 412
           ++      R +A+          + +F  + +E  S  ++   + ++ +G          
Sbjct: 374 RLQARPGQRVVAIFQPHRY--SRTLTFLEEFSESFSHADLVVLTDIYSAGEPNLGLISGE 431

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            L + +      V Y  T+  +  ++  +L  GD+ +   
Sbjct: 432 QLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLG 471


>gi|302392928|ref|YP_003828748.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acetohalobium arabaticum DSM 5501]
 gi|302205005|gb|ADL13683.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acetohalobium arabaticum DSM 5501]
          Length = 343

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 7   FHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
             +L + + G  IG V      V G+     ++A  E  FA      D  +++  A    
Sbjct: 5   LKELAELVDGEIIGEVELIISGVGGVE----NVAKGEITFA----QSD--EYLTKAESSL 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           A  V+V  ++          +  VD+   A  K+A   
Sbjct: 55  AAAVIVADEI-----ESDKTLLKVDNPRLAFAKIAHEF 87


>gi|75764855|ref|ZP_00744223.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|74487658|gb|EAO51506.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
          Length = 297

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 82/276 (29%), Gaps = 23/276 (8%)

Query: 188 VITTIAPAHLSNFSGIEE--IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + T +   HL     +EE   A        G             +  + +  +       
Sbjct: 1   MFTNLTQDHLDYHKTMEEYKHAKGLLFAQLGNSYNHNREKYAVLNSDDNVTEEYMRSTAA 60

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T+ ++G    +D   +     S  +   +    +S+ V    IG     N+L       +
Sbjct: 61  TVVTYGIDTTSDIMAKNIVMTSGGTTFTLVTPYESVNVTMKLIGKFNVYNVLAATAAGLV 120

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
               + T I  +       GR            +T+I + Y   P S++  +    Q + 
Sbjct: 121 SGVKLQTIIAVIKELAGVPGRF---EVVDGGQNYTVIVD-YAHTPDSLENVLKTAKQFA- 175

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR 420
             +G    ++G     G         +   ++    +H   +          A+ D + +
Sbjct: 176 --KGDVYCIVG----CGGDRDRTKRPIMASVATKYATHAIYTSDNPRSEDPAAILDDMVQ 229

Query: 421 SIHVHYSE---TMDGLFLFIQSSLVDGDVVVV--KS 451
               +  E             +++   D++++  K 
Sbjct: 230 GASGNNYEVIIDRKEAIHHAIANVKADDIIIIAGKG 265


>gi|261417495|ref|YP_003251178.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373951|gb|ACX76696.1| Mur ligase middle domain protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328089|gb|ADL27290.1| putative UDP-N-acetylmuramate--alanine ligase murC [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 475

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 70/430 (16%), Positives = 124/430 (28%), Gaps = 52/430 (12%)

Query: 64  GAGLVVVNTDMVASIGSLS-IPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKT 120
           G   VVV+T +  S   L      GV  +  +  L K++  AR       IAI+G+ GK+
Sbjct: 71  GLTAVVVSTAIEDSNPDLKRAKELGVPVMHRSEMLAKISKEAR------TIAISGTSGKS 124

Query: 121 TTKEMLTIALSSI--KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           T   M+   L     + +        N          +    ++ + E+  S        
Sbjct: 125 TVTAMVYHILDYAGLQPSVMTGAGLVNLQAQGKIGNAVSGKGEWLVAEVDES-----DGT 179

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P I VI  I          I E+     +  + +   G I +  D          
Sbjct: 180 LVRYEPEIGVILNIDKD----HKEISELEQIFLKFSQNVLSAGHILIVNDAHPLAK---- 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                    + FG       Q   +K         V+   + ++      G H  +N L 
Sbjct: 232 --KFSAGREFDFGYESYVSVQGIDFKSVGTHIQFRVRHGNELVKFEIPLPGKHNMENALA 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                      + T   ALS F     R +                +     AS+K+A  
Sbjct: 290 ATAAALRAGVSLHTCADALSSFPGVFRRHQILGTFNGITLVDDFAHNPAKIAASIKSAQD 349

Query: 359 -----VLSQISPHGEGRRIAVLGD-------------MCEMGELSQSFHIDLAEVLSLYN 400
                V++   PHG G    +  D             M    +    F  ++    +   
Sbjct: 350 FTEGRVIAWFQPHGFGPTRFLRKDLVDFIAKTLRPMDMDFDRKNDVMFFSEI--YYAGGT 407

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR- 459
           ++    +G     L   + +     Y    +     +      GD +++  +        
Sbjct: 408 VTRDISAGDLADDL---ILKGCEAIYIADRNECAKKMLEYAEPGDTILLMGARDPSLKEY 464

Query: 460 --LINLLLEE 467
              +  LLE+
Sbjct: 465 ACYVKQLLED 474


>gi|123440792|ref|YP_001004783.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087753|emb|CAL10538.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 461

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 34/374 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M+          Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGMVA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +   G I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGAGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G+                  +          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGRWFAR------KVAVDASVFEVFLDNKLVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A           +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPAAACRA----LGDFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGMCRNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   +  +   GD ++V  SN  GF  + +
Sbjct: 386 LFQPQHISWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGDHILV-MSNG-GFGGIHD 443

Query: 463 LL------LEEFPA 470
            L        E+ A
Sbjct: 444 KLLSALSQKAEYEA 457


>gi|116627695|ref|YP_820314.1| cation transport ATPase [Streptococcus thermophilus LMD-9]
 gi|116100972|gb|ABJ66118.1| Cation transport ATPase [Streptococcus thermophilus LMD-9]
          Length = 732

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 82/264 (31%), Gaps = 13/264 (4%)

Query: 194 PAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKS 253
            ++ ++ S  EE+ S      E ++        ++    + +    +   +  + +    
Sbjct: 1   MSNKTHLSNYEEMMSEHHHNHEMVDMKHENHEMHNMHNMDNMHDMDNMHNMHNMDNMHDM 60

Query: 254 KNAD-FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            + D           +       +        H      M++ + + + ++  L      
Sbjct: 61  HDMDNMHDMDNMHDMDNMHDMDNMHDMMNHGGHMMHMGDMSKKLKVAIILMIPLLLISPI 120

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
           A   +  F   E         +     T           S K A+ +L  +         
Sbjct: 121 AGFTILKFPGSEILQLILGTIIFFYSGTPFFRGAKGELKSRKPAMMMLITMGISVAYAYS 180

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW------LSGFHVLALKDALPRSIHVHY 426
                M   G +  +F  +LA ++ +  I H+        +G  +  L   +P+  H+  
Sbjct: 181 VYATIMSLYGHMGMNFWFELATLIVIMLIGHLIEMKAIMGAGDALKDLASLVPKKAHLKS 240

Query: 427 SETMDGLFLFIQSSLVDGDVVVVK 450
            + ++       S L  GD+++VK
Sbjct: 241 GKDVE------LSELKVGDLLLVK 258


>gi|33592809|ref|NP_880453.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|33572457|emb|CAE42026.1| cyanphycin synthetase [Bordetella pertussis Tohama I]
 gi|332382222|gb|AEE67069.1| cyanophycin synthetase [Bordetella pertussis CS]
          Length = 857

 Score = 46.4 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 116/383 (30%), Gaps = 46/383 (12%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR------- 155
           R   +  ++A+ G+ GKTTT  +    L           S   ++G              
Sbjct: 465 RDDGRIPVVAVAGTNGKTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTGDCSGPRS 524

Query: 156 -----MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIA 207
                +  DVD  + E      G +R      R ++A++T I           S +E++A
Sbjct: 525 ARRLLLHPDVDAAVLETA--RGGVLREGLAFDRCNVAIVTNIGMGDHFGLGYISTVEDLA 582

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQ 259
             K  I + ++  G   LN  D     + +                 + +     +    
Sbjct: 583 VVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQGHRVVY 642

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                  + Q   EV      + +   G      +N +  L     L  D DT   AL++
Sbjct: 643 RDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTIRHALAI 702

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F              +    TLI + Y  NP +++A +  +  +        I+  GD  
Sbjct: 703 FVNDAQTAPGRFNVFDFRGATLIAD-YGHNPDAIQALVRAIDTMPARRRSVVISGAGD-- 759

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
                 +         +       V L           G  V  L+  L ++    + + 
Sbjct: 760 ---RRDEDLRQQ--TEILGGAFDDVILYQDQCQRGRADGEVVALLRQGLQQAPRTRHIDE 814

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G           L  GD+ ++
Sbjct: 815 IQGEFVAIDAALERLAPGDLCLI 837


>gi|304318121|ref|YP_003853266.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302779623|gb|ADL70182.1| cyanophycin synthetase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 875

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 73/476 (15%), Positives = 152/476 (31%), Gaps = 74/476 (15%)

Query: 29  GISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLV-VVNTDMVASIGSLSIPVF 86
           G +ID ++ I P     A++            A+      + +   ++   +   +  + 
Sbjct: 389 GTAIDRTKEIHPDNIEIAVR---------AAKAIGLDIAGIDITMENISMPLNRSNGAII 439

Query: 87  GVD-----------------DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
            V+                 DV  A+  +      ++   II++TG+ GKTTT  M++  
Sbjct: 440 EVNAAPGIRMHHYPSKGKSRDVAKAIVNMLYPKGSKATIPIISVTGTNGKTTTVRMISQI 499

Query: 130 LSSI------------KKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           L                    CI   +N             ++D  + E      G +R 
Sbjct: 500 LKMYGYTVGMTSTDGIYVDDVCIYKGDNSGPKSARTCLADKNIDAAVLETA--RGGIVRE 557

Query: 178 LTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                   + +IT I+  H  +     +E++A  K+ + E ++K G   LN DD     +
Sbjct: 558 GLGYDLADVGIITNISEDHLGIDGIETLEDLAFVKSLVVEAVKKDGYSVLNADDPMTPYI 617

Query: 236 KAK--------SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
             +        S      TI    +       ++          +    +   +    +G
Sbjct: 618 SKRAKGKIIYFSMHENNITIKRHLEEGGISVYVKNDTIVIANGEIVPVAKIDEIPATLNG 677

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
              +  +N +  +     +   V+   K +  F+  E          N G F ++ + Y 
Sbjct: 678 KVLYNVENAMAAIAASYGIKIPVNVISKGIKSFYCDENHNPGRFNIFNVGSFRVLVD-YG 736

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            N  S++  I    +++P+       +LG +   G+ S S  + + E+        V++ 
Sbjct: 737 HNIDSIRKVIESARKLNPNR------LLGVIGVPGDRSDSSTLKIGEICGE-GFDKVYIK 789

Query: 408 ------GFHVLALKDALPRS--IHVHYSETMD------GLFLFIQSSLVDGDVVVV 449
                 G     +   L           E ++                  GD++V+
Sbjct: 790 EDLDLRGRKPGEIAKLLEIGVLKGGLSKEDVNVILKEVDALKTAMYEAQPGDLIVI 845


>gi|283782059|ref|YP_003372814.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Pirellula staleyi DSM 6068]
 gi|283440512|gb|ADB18954.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Pirellula staleyi DSM 6068]
          Length = 364

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 17/117 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           MN   T   L   + G   G      + G +  S +  P +          D        
Sbjct: 1   MN--LTLAQLADLVDGTLSG-DSSLEITGAATLS-AARPGDITLC------DSPKLAPQL 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
            +  A  VVV+ +          P   V  V GA  K+    R      +++ +G  
Sbjct: 51  ARCPAAAVVVSDNYQ----PTDRPTITVASVHGAFAKIVAHYR---PLPVVSYSGVH 100


>gi|56412401|ref|YP_149476.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361337|ref|YP_002140972.1| UDP-N-acetylmuramate--L-alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|59798120|sp|Q5PDC7|MURC_SALPA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620429|sp|B5BLC3|MURC_SALPK RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|56126658|gb|AAV76164.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092812|emb|CAR58238.1| UDP-N-acetylmuramate:alanine ligase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 491

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 54/398 (13%), Positives = 105/398 (26%), Gaps = 45/398 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   + 
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +            +        + I E   S    +      ++P +A++T I
Sbjct: 144 AGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLS-NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+       E +          L   G   +  DD     L  +      +   ++G
Sbjct: 196 EADHMDTYHGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQTTTYG 251

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM------------- 298
            S++AD ++  ++Q   Q    +  QG     V                           
Sbjct: 252 FSEDADVRVEDYQQIGPQGHFTLLRQGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIDD 311

Query: 299 -TLGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
             +                       P  G+        + G      ++      +   
Sbjct: 312 DAILRALESFQGTGRRFDFLGEFPLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWP 371

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
             +++    PH   R   +  D   +     +  +          I      G    +L 
Sbjct: 372 DKNLVMLFQPHRYTRTRDLYDDFANVLTQVDALLMLDVYPAGEAPI-----PGADSRSLC 426

Query: 416 DALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +     +          +   +   L   D+++V+ 
Sbjct: 427 RTIRNRGKIDPILVSDPAQVATMLAPVLTGNDLILVQG 464


>gi|17232557|ref|NP_489105.1| UDP-N-acetylmuramate--L-alanine ligase [Nostoc sp. PCC 7120]
 gi|25008804|sp|Q8YM75|MURC_ANASP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|17134203|dbj|BAB76764.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 494

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 59/400 (14%), Positives = 120/400 (30%), Gaps = 40/400 (10%)

Query: 68  VVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T + ++         L  P+    DVL AL               +A+ G+ GKTT
Sbjct: 96  VVCSTAINSNNLEYQAAIELGCPILHRSDVLAALIN---------DYHSVAVAGTHGKTT 146

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L         I     +               + + E   S           
Sbjct: 147 TSSMIGYMLLEAGLDPTIIVGGEVN---AWEGNARLGQSSYLVAEADES-----DGSLVK 198

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT I   H  ++  +EE+        +G +         D      L   +  
Sbjct: 199 HAPEIGIITNIELDHPDHYDTLEEVVDIFQTFAKGCKTLIGSV---DCETVRELLRNASG 255

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              +   ++   ++ +                  +  K   +    +      N+   L 
Sbjct: 256 DRQQPTITYSLHQDTEADYTVTNIDYRADGTTALVWEKGKALGVLKLKLLSRHNLSNALA 315

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++         +        EG  +R+         T ID+   A+  S   A    +
Sbjct: 316 AVAVGRLVGLEFGEIAKGIAGFEGARRRFEFRGEVDGITFIDDY--AHHPSEIRATLAAA 373

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------HVL 412
           ++      R +A+          + +F  + +E  S  ++   + ++ +G          
Sbjct: 374 RLQARPGQRVVAIFQPHRY--SRTLTFLEEFSESFSHADLVVLTDIYSAGEPNLGLISGE 431

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            L + +      V Y  T+  +  ++  +L  GD+ +   
Sbjct: 432 NLAEKIAQEHPQVVYQPTLSTVCEYLLKNLRPGDLALFLG 471


>gi|319791692|ref|YP_004153332.1| UDP-N-acetylmuramate [Variovorax paradoxus EPS]
 gi|315594155|gb|ADU35221.1| UDP-N-acetylmuramate [Variovorax paradoxus EPS]
          Length = 463

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 105/363 (28%), Gaps = 23/363 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A+ G+ GKTTT  ML      +++     G     + +   ++ 
Sbjct: 101 QWLAEHVL--LGRHVLAVAGTHGKTTTTSMLA---WVLEQGGKAPGFLVGGVPLDFGVSA 155

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              D    + E                  RP  AV+  +   H   F  +  I      +
Sbjct: 156 RLGDGAAFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLAAIERQFHHL 215

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--SW 271
              +  TG + +N  +   + + A+    G+    + G+ + +            +    
Sbjct: 216 VRTVPGTGRLVVNATEESLQRVLAQGCWSGLARFGAGGEWQASGSHDAFDVLRQGKKVGR 275

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++ +L G   ++             +        L +  +   +                
Sbjct: 276 VDWELSGLHNQMNAMAAIAAADHVGVAPADAARALGSFRNVRRRMELRGTVDSITVYDDF 335

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                   T +D        + K +  +L+ + P     +   LG M      S      
Sbjct: 336 AHHPTAIRTTLDGLRKKLDDAGKQSERILAALEPRSNTMK---LGVMAAQLPWS------ 386

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
               L   ++S    +G    A     P       +  ++ L   I ++   GD + V  
Sbjct: 387 ----LESADLSFCHTAGLDWDAAAALAPMGDRAQVAGAIEPLVAQITAAARPGDHI-VCM 441

Query: 452 SNS 454
           SN 
Sbjct: 442 SNG 444


>gi|294852759|ref|ZP_06793432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
 gi|294821348|gb|EFG38347.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. NVSL
           07-0026]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|251771051|gb|EES51635.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Leptospirillum ferrodiazotrophum]
          Length = 356

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 33/117 (28%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SIAPQEA-FF-------AIKGPHYD 52
           + T   +   + G  IG      +  I    R      P +  F        A+      
Sbjct: 1   MITLAQIASQVGGTLIGSDGSLEIRSI----RPMNEAGPHDLTFLSNPKYRKAVP----- 51

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
            H      ++ GA LV         +   SIP   V     A+  L           
Sbjct: 52  -H------LKAGAILV------PEILAEASIPQIVVASPYLAMAILLQHFFPLPSPK 95


>gi|237799292|ref|ZP_04587753.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022148|gb|EGI02205.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 134/396 (33%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +        +
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPMVKRPTL 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
               ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 246 ----TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|254719464|ref|ZP_05181275.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella sp.
           83/13]
 gi|265984470|ref|ZP_06097205.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306839243|ref|ZP_07472060.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
 gi|264663062|gb|EEZ33323.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella sp. 83/13]
 gi|306405790|gb|EFM62052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella sp. NF
           2653]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 112/374 (29%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGVDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            S      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWSQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L   +    S+T+
Sbjct: 394 TLGGVVPFEISDTL 407


>gi|73542665|ref|YP_297185.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Ralstonia
           eutropha JMP134]
 gi|118595678|sp|Q46WZ2|MURD_RALEJ RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|72120078|gb|AAZ62341.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia eutropha
           JMP134]
          Length = 503

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 106/371 (28%), Gaps = 25/371 (6%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-NHIGVPL 151
            AL  L           ++AITG+ GKTTT  +    +    K+ A  G+ + + +    
Sbjct: 109 RALAHLQAE--SGYAPKVLAITGTNGKTTTTALTGRLVERAGKSVAVAGNISPSALDKLS 166

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D  + EL    L      TH + PH A +  +   HL     +E  A++KA
Sbjct: 167 ACIASATLPDVWVLELSSFQL----ETTHTLAPHAATVLNVTQDHLDWHGSMEAYAASKA 222

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLK-----------AKSHALGIKTIYSFGKSKNADFQL 260
            IF          LN +D     +                  G   +   G         
Sbjct: 223 RIFGPAGTACVQVLNRNDRLTMDMARPGTAPVTFGTDLPETPGSFGVLREGGMPWLVLAE 282

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
              +   E      +    + E V       M  + L   G+ +   A    A+      
Sbjct: 283 PDSEAEGEGKPRRRKADATAQEAVPVRHKRLMPADALHIRGMHNATNAMAALALCRAIDL 342

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                                +               +V + ++      +  VL    E
Sbjct: 343 PLNALLHGLREYRGEPHRVEWVATIDEVEYFDDSKGTNVGATVAALSGLDKRVVLIAGGE 402

Query: 381 -MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQ 438
             G+        +A+         V L G     L+DAL  S      + T++       
Sbjct: 403 GKGQDFSPLAAPVAQYARA-----VVLIGRAAGELRDALQGSGASLVDAATLEEAVNKAA 457

Query: 439 SSLVDGDVVVV 449
                GDVV++
Sbjct: 458 ELAEGGDVVLL 468


>gi|62290326|ref|YP_222119.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700250|ref|YP_414824.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis biovar Abortus 2308]
 gi|189024559|ref|YP_001935327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237815833|ref|ZP_04594830.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|254689627|ref|ZP_05152881.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 6 str. 870]
 gi|254697769|ref|ZP_05159597.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730658|ref|ZP_05189236.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 4 str. 292]
 gi|256257877|ref|ZP_05463413.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 9 str. C68]
 gi|260546868|ref|ZP_05822607.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260755155|ref|ZP_05867503.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260758374|ref|ZP_05870722.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260762200|ref|ZP_05874543.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884168|ref|ZP_05895782.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297248713|ref|ZP_06932431.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
 gi|75496533|sp|Q57C76|MURD_BRUAB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118595643|sp|Q2YM69|MURD_BRUA2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62196458|gb|AAX74758.1| MurD, UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           abortus bv. 1 str. 9-941]
 gi|82616351|emb|CAJ11408.1| Cytoplasmic peptidoglycan synthetases, N-terminal:Pyridine
           nucleotide-disulphide oxidoreductase, class
           I:Folylpolyglutamate s [Brucella melitensis biovar
           Abortus 2308]
 gi|189020131|gb|ACD72853.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus S19]
 gi|237789131|gb|EEP63342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella abortus
           str. 2308 A]
 gi|260095918|gb|EEW79795.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           NCTC 8038]
 gi|260668692|gb|EEX55632.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 4 str. 292]
 gi|260672632|gb|EEX59453.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675263|gb|EEX62084.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 6 str. 870]
 gi|260873696|gb|EEX80765.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 9 str. C68]
 gi|297175882|gb|EFH35229.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella abortus
           bv. 5 str. B3196]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|256027427|ref|ZP_05441261.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D11]
 gi|289765390|ref|ZP_06524768.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
 gi|289716945|gb|EFD80957.1| D-glutamic acid-adding enzyme [Fusobacterium sp. D11]
          Length = 432

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 70/364 (19%), Positives = 117/364 (32%), Gaps = 49/364 (13%)

Query: 97  KLAVAARLR--SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           ++A    +    K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+  
Sbjct: 78  EIAYNYMMEKGIKTKIIAITGTNGKSTTTAKISDMLNYAGY----KAAYAGNIGRSLSEV 133

Query: 155 RMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     DF   EL    L  I       +P+I++I  + P H+  +   +E    K  I
Sbjct: 134 LLKEKDLDFISLELSSFQLENIE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNI 189

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            +   +      N DD   E    +  A  I    S  K K AD  +   K    +  + 
Sbjct: 190 TKNQTEDLYFIENIDDVEIEKRAKQVKAKRI----SVSKFKKADIFVENDKIYHGKDSII 245

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
              +                 N+  TL +V+          K             R    
Sbjct: 246 DVDKLS----------LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELF 295

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
              G    I++S   N  S K AI           G    V                 LA
Sbjct: 296 FTYGKLKFINDSKATNVDSTKFAIEANKNSILICGGYDKGV-------------DLAPLA 342

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGD 445
           E++   NI  V+L G     ++  L +           V+   ++  +      +    +
Sbjct: 343 EMIKE-NIKEVYLIGVIADKIESELKKVGYEDSKIHKLVNLENSLQDMKKRFTKN--SDE 399

Query: 446 VVVV 449
           V+++
Sbjct: 400 VILL 403


>gi|332977769|gb|EGK14529.1| UDP-N-acetylmuramate--L-alanine ligase [Psychrobacter sp.
           1501(2011)]
          Length = 476

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 67/416 (16%), Positives = 138/416 (33%), Gaps = 49/416 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIP---VFGVDDVLGA--LNKLAVAARLRSK 107
           GHD     +   A ++VV++ +  +   +         V  V  A  L +L         
Sbjct: 70  GHD--SKNIAN-ADVIVVSSAIDRNNPEIQAALKAQLPV--VRRADMLGELMRYRHG--- 121

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              IA+ G+ GKTTT  +LT+ ++        +     +            +  + I E 
Sbjct: 122 ---IAVAGAHGKTTTTSLLTMMMTEAGLDPTYVIGGKLN---ASGKNASLGESRYLIAEA 175

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLN 226
             S           + P  A++T I   H+  +    +++ +A  +  + +   G   + 
Sbjct: 176 DES-----DASFLTLHPMAAIVTNIDQDHMETYGNSFDKLKAAYIQFLQNMPFYGLAVVC 230

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVH 285
            DD     +        +    ++G   + + Q    +    ++   V  +     ++  
Sbjct: 231 GDDKELYSMIDDIGRPVL----TYGFEPHNNVQATDVRVEGTKTHFTVLRKDHEPLQLTL 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           +  G H   N L  + + +    D +   +AL+ F     R ++  C        L+ + 
Sbjct: 287 NIPGQHNVLNALAAITMATDEGVDDEAIKRALAKFAGVGRRFEQQACVKKDEGDVLLIDD 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A I    +  P        V+         ++  + D   VLS   +  + 
Sbjct: 347 YGHHPVEVAATIKAARESYPER----RLVMLFQPHRYTRTRDCYDDFVAVLSQ--VDELM 400

Query: 406 L-----------SGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVV 449
           L            G    +L  ++     V       D L   +Q  L  GD +++
Sbjct: 401 LLDVYSAGETPIVGADTKSLARSIRLRGEVEPMVIDKDELAPAMQRILKAGD-ILI 455


>gi|327313069|ref|YP_004328506.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
 gi|326946343|gb|AEA22228.1| putative UDP-N-acetylmuramate--L-alanine ligase [Prevotella
           denticola F0289]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 103/352 (29%), Gaps = 37/352 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    DF + E    
Sbjct: 115 LCFAGTHGKTTTSTMCAHIMHQSHLDCNAFLGGISKN--YGTNYILSGRSDFVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP ++VIT+  P HL  +   E    +     E ++K G + L+    
Sbjct: 171 ---EFDRSFHWLRPWMSVITSTDPDHLDIYGTKEAYLESFRHYTELIQKGGALILHKGLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                  K H      +Y + ++                ++  +       +V       
Sbjct: 228 M------KQHVQEGVKVYEYSRNDGDFHAENVRIADGAITFDFISPIENVKDVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     D   + +  +   + R           F +          
Sbjct: 282 INIENGIAAMAMAQLNGCTADELRRGMKTYGGVDRRFDFKIKNSRHVFLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            S K+   +          +          +   ++ F+ D A  L   +   V L+   
Sbjct: 342 QSAKSLKELYPDRKVTVIFQPH--------LYSRTRDFYKDFASAL--SHFDEVILTEIY 391

Query: 408 --------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G     + D L   +     +  D +  F++S   D DV+VV  
Sbjct: 392 PAREEPIPGVTSSLIYDNLRPGVEKQMIK-KDDVLDFVRS--RDFDVLVVLG 440


>gi|294787087|ref|ZP_06752341.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315226740|ref|ZP_07868528.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
 gi|294485920|gb|EFG33554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parascardovia
           denticolens F0305]
 gi|315120872|gb|EFT84004.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Parascardovia
           denticolens DSM 10105]
          Length = 510

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 66/368 (17%), Positives = 123/368 (33%), Gaps = 38/368 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + ITG+ GKT+T EM +  L +       +     +IGVP++ A       + + EL   
Sbjct: 115 VGITGTNGKTSTTEMTSEILQAAGYQAPAV----GNIGVPVSQAAQDPSNRYLVVELSSF 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            L     L        A IT +A  HL    G E  A+ KA+++ G+ +      +    
Sbjct: 171 QLHYTDDLAL----AGAAITNLADDHLDWHGGFENYAADKAKVYSGVSQVLVYNADDPRV 226

Query: 231 FFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +  +A+      +  +S      G        +        Q  +        +    
Sbjct: 227 SAKAREARPAPGCRRVGFSLEAPQPGTIGIDQGWIVNLSPVGPQGRLAPVTDFPHLCEPD 286

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +  H+  + L  L +   L  D   A+KALS F P   R ++     +     +I   
Sbjct: 287 GTVYPHLLADALTALALALGLGVDCQVAVKALSSFAPGGHRIQKVASYQDPSNGKIIRFV 346

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            ++   +  AA + LS          + + G + +  E S               I    
Sbjct: 347 DDSKATNAHAAAASLSSFPRKS---VVWIAGGLAKGAEFSSLVSRQ------REVIKAAV 397

Query: 406 LSGFHVLALKDAL---PRSIHVHYSETMDG------LFLFIQSSLVDGDVVVV---KSSN 453
           + G     +++AL      I     +  D             + +  GDV+++    +S 
Sbjct: 398 VIGQDQSLMEEALETQAPDIPYTLIDPADKGTVMARAIQAATAYVHGGDVILLAPACAS- 456

Query: 454 SCGFYRLI 461
                + +
Sbjct: 457 ---MDQFV 461


>gi|23502304|ref|NP_698431.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           1330]
 gi|148559574|ref|YP_001259326.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella ovis
           ATCC 25840]
 gi|161619381|ref|YP_001593268.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           canis ATCC 23365]
 gi|225852915|ref|YP_002733148.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis ATCC 23457]
 gi|254694117|ref|ZP_05155945.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           abortus bv. 3 str. Tulya]
 gi|254702154|ref|ZP_05163982.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 5 str. 513]
 gi|254704691|ref|ZP_05166519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella suis
           bv. 3 str. 686]
 gi|256061490|ref|ZP_05451634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           neotomae 5K33]
 gi|256113986|ref|ZP_05454769.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263604|ref|ZP_05466136.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|260566062|ref|ZP_05836532.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|261214417|ref|ZP_05928698.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261325497|ref|ZP_05964694.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261752724|ref|ZP_05996433.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261755384|ref|ZP_05999093.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|265995328|ref|ZP_06107885.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|30316052|sp|Q8FZP2|MURD_BRUSU RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23348281|gb|AAN30346.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella suis
           1330]
 gi|148370831|gb|ABQ60810.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella ovis ATCC
           25840]
 gi|161336192|gb|ABX62497.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella canis
           ATCC 23365]
 gi|225641280|gb|ACO01194.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis ATCC 23457]
 gi|260155580|gb|EEW90660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 4
           str. 40]
 gi|260916024|gb|EEX82885.1| D-glutamic acid-adding enzyme [Brucella abortus bv. 3 str. Tulya]
 gi|261301477|gb|EEY04974.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella neotomae
           5K33]
 gi|261742477|gb|EEY30403.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 5
           str. 513]
 gi|261745137|gb|EEY33063.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella suis bv. 3
           str. 686]
 gi|262766441|gb|EEZ12230.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 3 str. Ether]
 gi|263093655|gb|EEZ17660.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326409457|gb|ADZ66522.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Brucella
           melitensis M28]
 gi|326539163|gb|ADZ87378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brucella
           melitensis M5-90]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 41/374 (10%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGS 116
           A  V+          +   P + VD    A    +  + +  R R         IAITG+
Sbjct: 67  AVFVLS----PGVPLTHPQPHWSVDLARAAGVEIIGDVELFVRERNHIAPDCPFIAITGT 122

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GK+TT  ++   + +  +          +IG  +     P    F + E     +    
Sbjct: 123 NGKSTTTALIAHIIKATGRDMQLG----GNIGTAILTLEPPCADRFYVVECSSYQID--- 175

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
            L   + P   ++  + P HL     +E  A+ K  +            +      + + 
Sbjct: 176 -LAPSLNPTAGILLNLTPDHLDRHGSMENYAAIKERLVAASGTAIIGIDDAYC---QAIA 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + H  GI  +    K K+ D            +      +  S+E +    G H AQN 
Sbjct: 232 DRLHGAGI-RVVRISKEKHLDRGYFADGAKLLWAQDGEIDEIASLEGIGSLRGAHNAQNA 290

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           L  +         ++     L  F     R         +G    +++S   N  +   A
Sbjct: 291 LAAIVACLSAGLSLEEIHAGLKSFPGLAHRM---EQVGRRGKVLFVNDSKATNAEATAPA 347

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                 +S   +     V G     G  S +             ++  +L G        
Sbjct: 348 ------LSSFPQNIYWIVGGVPKAGGINSLT--------AFFPRVAKAYLIGEAAAQFAA 393

Query: 417 ALPRSIHVHYSETM 430
            L  ++    S+T+
Sbjct: 394 TLGGAVPFEISDTL 407


>gi|121535917|ref|ZP_01667713.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
 gi|121305488|gb|EAX46434.1| UDP-N-acetylmuramate--alanine ligase [Thermosinus carboxydivorans
           Nor1]
          Length = 460

 Score = 46.0 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 117/398 (29%), Gaps = 45/398 (11%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            +VV++ +  S   +       + +F   D++ AL         R     IAI G+ GKT
Sbjct: 67  AIVVSSAIPESNPEIRAAREQGLKIFHRADIVAALMA------EREG---IAIAGAHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  M+ + L         +          +          + + E   S          
Sbjct: 118 TTTSMIALVLEKAGLDPTVLIGGELEY---IGGNAKYGKGRYLVAEADES-----DGSFL 169

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            + P +AV+T I   H+  +  +E I     E    +     + +   D+    ++  + 
Sbjct: 170 KLTPRLAVVTNIENDHMDFYETMENILFTFKEFLYKIHPKDGLAVLCFDN--SYIRNIAA 227

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           +L    I                       +   +       +  +  G H   N L  L
Sbjct: 228 SLDRPYISYAINHDAEFTARNIRVHGPAIIYDAYRHNELLGTIRLNVPGRHNVANSLAAL 287

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   +          L+ F   + R +             + + Y  +P  +   +   
Sbjct: 288 AVGLHVGLTFSQVADGLASFLGAKRRFQTKGRVNG----IWVVDDYAHHPTEITTTLLAA 343

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHV------ 411
            ++ P        +          ++    +        +I   + ++ +G         
Sbjct: 344 REMRPKR-----LICVFQPHRYSRTKFLRSEFGRAFEPADILVLTDIYPAGEKPIPGITG 398

Query: 412 LALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
             +K+ + R  +  V Y    + +  ++      GD++
Sbjct: 399 EVIKEEVERQTNRLVTYIPDRNNIARYLAEIAEPGDLI 436


>gi|237743960|ref|ZP_04574441.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
 gi|229432991|gb|EEO43203.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           7_1]
          Length = 454

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 71/352 (20%), Positives = 114/352 (32%), Gaps = 47/352 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF   
Sbjct: 112 KTKIIAITGTNGKSTTTAKISDMLNYAGY----KAAYAGNIGRSLSEVLLKEKDLDFISL 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +      
Sbjct: 168 ELSSFQLENIE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E    +  A  I    S  K K AD  +   K C  +  +    +        
Sbjct: 224 NIDDVEIEKRAKQVKAKRI----SVSKFKKADIFVENDKICHGKDSIIDVDKLS------ 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+  TL +V+          K             R     N G    I++S
Sbjct: 274 ----LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKLKFINDS 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI           G    V                 LAE++   NI  V+
Sbjct: 330 KATNVDSTKFAIEANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEVY 375

Query: 406 LSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++  L +           V+   ++  +           +V+++
Sbjct: 376 LIGVIADKIESELKKVGYEDSKIHKLVNLENSLQDMKKRFTKD--SDEVILL 425


>gi|15673572|ref|NP_267746.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. lactis Il1403]
 gi|281492169|ref|YP_003354149.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|30316118|sp|Q9CF91|MURD_LACLA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|12724595|gb|AAK05688.1|AE006389_8 UDP-N-acetylmuramoylalanine D-glutamate ligase [Lactococcus lactis
           subsp. lactis Il1403]
 gi|281375840|gb|ADA65334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis KF147]
 gi|326407055|gb|ADZ64126.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 450

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  I       RP IA+IT +  AHL      +   +AK  I E +  
Sbjct: 161 SDTLVMELSSFQLMGID----SFRPKIALITNLFSAHLDYHGSQKAYEAAKWRIQENMTS 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN++      L  K+ A  +              + +     S+   +    +  
Sbjct: 217 DDFLILNFNQEKCRNLADKTKATVLA----------FSTKEKVNGAYSKDGKIYFNDEYI 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  +    +     +  ++ L+ F   + R    +        
Sbjct: 267 MEVSELSLPGEHNLENALAAIVASKLQGTKNEAIVEVLTSFAGVKHRL---QYLGEIDGR 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S   N  + + A+S             + +L    + G   +    DL       
Sbjct: 324 KVYNDSKATNILATQKALSGFDNSK-------LWLLAGGLDRGNGFEELEKDL------Q 370

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G     L+    + +I V  SE +      I      GD +++
Sbjct: 371 DLKGMVVFGQTANKLRLTAEKLNIPVFDSENVAKALEEILPQTQAGDTILL 421


>gi|330957969|gb|EGH58229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAINTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S+ AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTMTYGFSEEADVRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  +K LS F     R + Y     +G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVKGLSGFQGVGRRFQIYGELPVEGGNVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|330888571|gb|EGH21232.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 486

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           + V+T I   H++ +     ++     E    L   G   +  DD     +  +     +
Sbjct: 186 VGVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPQVKRPTL 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
               ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 246 ----TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDYGHHPREVAAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVSQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|329888140|ref|ZP_08266738.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
 gi|328846696|gb|EGF96258.1| UDP-N-acetylmuramate--alanine ligase [Brevundimonas diminuta ATCC
           11568]
          Length = 481

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 74/421 (17%), Positives = 145/421 (34%), Gaps = 43/421 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFG-VDDVLGALNKLAVAARLRSKATII 111
           GHD   H  + G   VV +T + ++   L++     +  V  A   LA   RL+     I
Sbjct: 63  GHD-AAHVTE-GVSAVVYSTAVKSTNPELAVARERRIPLVRRA-EMLAELMRLQFS---I 116

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
            + G+ GKTTT  M+   L +       +     +            + D+ + E   S 
Sbjct: 117 GVGGTHGKTTTTSMVAALLDAGSLDPTVVNGGIIN---AYGTNAKVGEGDWMVVEADES- 172

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     ++  +A+IT I P HL ++   + +  A  +  E +   G   +  D   
Sbjct: 173 ----DGSFLRLKCTVAIITNIDPEHLDHYGDFDAVKKAFGDFIEDIPFYGFGVVCLDHPE 228

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---------- 281
            + L A+        + ++G +  A  +    +   + S  +V +QG+ M          
Sbjct: 229 VQKLAAQIDNR---RLVTYGLNPQAMVRADNVRMDPDGSRFDVVIQGQGMAALGEPARIE 285

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G+H   N L  + +   +  D D     L+ F   + R               
Sbjct: 286 NLHLPMAGWHNVSNALAAIAVAREIGVDDDAIRTGLAGFGGVKRRFTT----TGVAHGVR 341

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           + + Y  +P  + A +    Q+  + +     +           +    D +   S  + 
Sbjct: 342 VIDDYGHHPVEIAAVLKAARQVVQNADNTGRVIAVVQPHRYTRLRDLMEDFSTCFSDADS 401

Query: 401 --ISHVWLSGF------HVLALKDALPRSIHVHYSETMDGLF--LFIQSSLVDGDVVVVK 450
             ++ V+ +G          AL + + R  H H +   +       I+     GD+VV+ 
Sbjct: 402 VLVADVYPAGEQPIEGVDKHALVEGVRRYGHRHVAALENAAVLPRVIKDEAKPGDLVVLL 461

Query: 451 S 451
            
Sbjct: 462 G 462


>gi|260426600|ref|ZP_05780579.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
 gi|260421092|gb|EEX14343.1| UDP-N-acetylmuramate--alanine ligase [Citreicella sp. SE45]
          Length = 475

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 122/400 (30%), Gaps = 43/400 (10%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VV+++ +      L       +PV     V  A   LA   RL+S    +A+ G+ G
Sbjct: 81  AEVVVISSAIKPGNPELDEARRRGLPV-----VRRA-EMLAELMRLKSN---VAVAGTHG 131

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  M+   L +           N  I             ++ + E   S        
Sbjct: 132 KTTTTTMVATLLDA---GQLDPTVINGGIIHAYGSNARVGLGEWMVVEADES-----DGT 183

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            + +   IA++T I P H+ ++  IE +     +    +   G      D +  + L  +
Sbjct: 184 FNRLPATIAIVTNIDPEHMEHWGSIENLRDGFYQFVSNIPFYGLAVCCTDHAEVQALVGR 243

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                + T     ++      LR  K  +    +      K         G H   N L 
Sbjct: 244 VTDRRVTTYGFNAQADVRAVNLRYEKGIAHFDILLQAEDMKIEGCTLPMPGDHNVSNALA 303

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + +   L    +    AL+ F     R  R            I + Y  +P  + A + 
Sbjct: 304 AVAVARHLGMKREEIRLALAAFGGVNRRFTRVGEVNG----VTIIDDYGHHPVEIAAVLK 359

Query: 359 VLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
              Q           PH   R  ++  D C     +    I          I      G 
Sbjct: 360 AARQATEGRVIAVHQPHRYSRLHSLFDDFCACFNEADVVAIAEVYAAGEAPIE-----GA 414

Query: 410 HVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
               L   L R  H H       D L   ++     GD+V
Sbjct: 415 TRDDLVAGLIRHGHRHARAILNEDDLERLVREQARPGDMV 454


>gi|226323768|ref|ZP_03799286.1| hypothetical protein COPCOM_01543 [Coprococcus comes ATCC 27758]
 gi|225207952|gb|EEG90306.1| hypothetical protein COPCOM_01543 [Coprococcus comes ATCC 27758]
          Length = 441

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 101/313 (32%), Gaps = 35/313 (11%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E GM  L +   +       +++  +I+  H+       E  +           
Sbjct: 136 CDYVVLEAGMGGLLDATNVIDTT--VLSIFASISMDHIGVLGNTLEEIAENKAGIIKPSC 193

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +      S  ++L+ K+   G + + S  +      +    +  S           +
Sbjct: 194 LAVVTSPQQMSVTDILQKKAGECGCRFVVSHPEKAVISEETMDGQIFSYG---------E 244

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             ++     G +   N    L  V         +I   +V           R  + +   
Sbjct: 245 YKDIRLRLAGRYQIDNAATVLEAVDA-LRRNGVSIPEDAVRKGFVKVTWPGRFQVLEKEP 303

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
           T+I +  +   A+ + A +V + ++         ++G M   G      +  +AE+++ Y
Sbjct: 304 TVIADGAHNRDAARRLAENVRTYLTDRK------IVGVM---GVFKDKEYEQIAEIMAPY 354

Query: 400 NISHVWLS----GFH---VLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +S V+      G        L + L  ++I    +E +       ++     DVV+V  
Sbjct: 355 -LSKVYTIDLPNGERNLGKERLCEVLKAKNIQSEPAENIADALEKAKAECGKEDVVLVFG 413

Query: 452 SNS-----CGFYR 459
           S S         R
Sbjct: 414 SLSYLGEVIRLER 426


>gi|54310305|ref|YP_131325.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium profundum SS9]
 gi|60390455|sp|Q6LMF4|MURD_PHOPR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46914746|emb|CAG21523.1| putative UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Photobacterium profundum SS9]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 63/370 (17%), Positives = 121/370 (32%), Gaps = 46/370 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            ++AITGS GK+T   ++              G+          L  +  + D  + EL 
Sbjct: 109 PVVAITGSNGKSTVTSLIGEMAKEAGINVGVGGNIGF-----AALDMLVNEHDLYVLELS 163

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
              L      T  ++   AV   ++  H+  ++G+E+ + AK  IFE             
Sbjct: 164 SFQL----ETTSSLQLKAAVYLNLSEDHMDRYNGLEDYSLAKMRIFEH------------ 207

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                 L   +         SF     +     +          E     +   +    I
Sbjct: 208 ----AELAVYNRDDLATFPVSFSHQITSFGFDNQDYGLVTLHGEEFLALDEQPIMKTSDI 263

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N+  +L  +++  A                G   R +  +NQ     +++S   
Sbjct: 264 ALVGRHNVANSLAALALADAVNIDRQAVCRALQRYNGLAHRCQLVVNQHDVKWVNDSKAT 323

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           N AS  AA+  L     +  G+   ++G   +  + S     +L  VL+  N+  ++  G
Sbjct: 324 NLASTLAALKGL-----NLPGKLHLLVGGDGKGADFS-----ELKLVLADLNV-QLYCFG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSCGFYRLI---N 462
                    +   I     ETM         +   GD++++    +S    F   +   +
Sbjct: 373 RDGNQFMPLVDAPI---CIETMAQAMAIAADTAQKGDMILLSPACAS-FDQFPNFMARGD 428

Query: 463 LLLEEFPAIQ 472
             +E+  A+Q
Sbjct: 429 AFIEQAKALQ 438


>gi|331003528|ref|ZP_08327025.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330412369|gb|EGG91760.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 113/348 (32%), Gaps = 34/348 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+  L    +                         D  + E    
Sbjct: 114 IAISGTHGKTTTTSMLSYILLDSGQDPTISVGGVLKKIKGNIHIG---SGDVFVTEAC-- 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P I VI  I   HL  F  I+EI ++  +        G I +N    
Sbjct: 169 ---EYTNSFLSLNPTIGVILNIEEDHLDFFKDIDEIRNSFKKFVTNTSDEGCIIINDKIE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E +        ++           + +  +       ++  +       +V     G 
Sbjct: 226 NNEEITENFKGKVVRYGSENSDCFVNNIRYDELGYP---TFDLIYKGSTYKDVKLCVGGN 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L ++ +   L   ++     L  F   + R +       +     I + Y  +P
Sbjct: 283 HNIDNALASICVAFELGVGIEDIKNGLLEFSGADRRFE----IKGKMGNITIVDDYAHHP 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
           + + A +++  +           V+         +++F  + A+VL   ++ +  ++   
Sbjct: 339 SEIAATLNIAKRYPHKR-----LVIAFQPHTFTRTKAFFEEFADVLK--DVDNCIIAKIY 391

Query: 408 --------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
                   G     L + +     +    +T D +  ++  +L DGD+
Sbjct: 392 PARETDDLGMSAKLLSERINSLGGNSRDFDTFDEIENYLLENLCDGDL 439


>gi|322380110|ref|ZP_08054363.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
           suis HS5]
 gi|321147457|gb|EFX42104.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthase [Helicobacter
           suis HS5]
          Length = 423

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 111/344 (32%), Gaps = 52/344 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF----G 163
            TII I+G+ GKTTT  ML + L S             +IG+PL      +  +      
Sbjct: 98  PTIIFISGTNGKTTTARMLGLLLKSSN------AQVGGNIGIPLIDLYTQIKAEQRKPPY 151

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++ L  S        T+ + P I ++  ++  HLS     E    AK +    +++ G +
Sbjct: 152 VWILETSSF--TLHYTNHLVPQIYILLPLSQDHLSWHENHENYVEAKLKPLSFMQQEGHV 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FL+        +KA  +   +                            +   Q   +++
Sbjct: 210 FLHASLKDHPTVKALINPPNLLFY----------------------QDSKHLAQQMGLQI 247

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      + L+ L +  + +   D  +    +  P      R    L+Q   T +D
Sbjct: 248 SKIRFEEPFLLDALLALSVAKLYSGVADYDLLNTYMIQP-----HRIEIFLDQDQNTWVD 302

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +       L  +          +LG     G+        L EVL+   I  
Sbjct: 303 DSKATNIDA------TLKALDRFKGCYIHLILG-----GDTKGMDLKPLFEVLAHMQI-E 350

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++  G     +        I  H    +      I+ +L  G +
Sbjct: 351 IYAIGASAPMVMQMAQDYHIRAHLCHDLRIAVEHIKQNLRPGQI 394


>gi|119026121|ref|YP_909966.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
 gi|226711884|sp|A1A2F1|MURD_BIFAA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|118765705|dbj|BAF39884.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 479

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 63/371 (16%), Positives = 112/371 (30%), Gaps = 32/371 (8%)

Query: 97  KLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+ S  T      I ITG+ GKT+T EM +  L++       +     +IG  +
Sbjct: 87  ELAWQLRVNSNTTGKPAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAV----GNIGKAV 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L       + +    A IT IA  HL    GIE  A+ KA
Sbjct: 143 SHAAVDPANDVLCVELSSFQLHFT----YSLELDCAAITNIADDHLDWHGGIENYAADKA 198

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQC 266
           ++F  ++K      + +        A++     +  ++      G+    D  +      
Sbjct: 199 KVFHNVKKALVYNADDERVTKLAFAAQTAPECRRIGFTLAEPKDGQIGVKDGWIVDMSGI 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
           +     +     K  +  H           L+   + ++       A K  ++   K+  
Sbjct: 259 AGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALTALALVLGLGADKDKALAALKQFT 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              +R        T    +      S                 + +  +      G   +
Sbjct: 319 PGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAKGSRFE 378

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSET-----MDGLFLFI 437
               D A  +         + G     + DA   S           T     M       
Sbjct: 379 QLVADQARTIKAA-----IIIGKDQQPMLDAFKASAPDIPMSIIDPTDNDTVMARAIDAA 433

Query: 438 QSSLVDGDVVV 448
            +    GDVV+
Sbjct: 434 GTYAQSGDVVL 444


>gi|283834853|ref|ZP_06354594.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
 gi|291069104|gb|EFE07213.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Citrobacter youngae ATCC 29220]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 59/365 (16%), Positives = 109/365 (29%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV         V    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGENVGVVKWGL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVVPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEV 384

Query: 405 WLS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPPHIPWQVAEVAEACVQPAHWSGDVDALADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
             LL+
Sbjct: 443 QKLLD 447


>gi|220930459|ref|YP_002507368.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium cellulolyticum
           H10]
 gi|220000787|gb|ACL77388.1| UDP-N-acetylmuramate/alanine ligase [Clostridium cellulolyticum
           H10]
          Length = 467

 Score = 46.0 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 105/384 (27%), Gaps = 28/384 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     L +PV    D    L  L            IA+ G+ GKTTT  M+T  +
Sbjct: 85  DNPEITRSKELGLPVI---DRAELLGLLMKKH--SFG---IAVAGTHGKTTTTSMITTIM 136

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                                    +  +   G  E  ++   E         P +AV+ 
Sbjct: 137 LESNTDPTAHIGGELDC--------IGGNTRIGNSEFFITEACEYYGSFLKFHPFMAVVL 188

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+  F  +E I S   E    +   G I    DD     + +K     I T    
Sbjct: 189 NIELDHVDYFRDLEHIKSIFGEFLALVPNDGYIVACADDENTLSVVSKKEC-NIITYGLK 247

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            K      +   +      S+   +   K   V     G H   N L  + +       +
Sbjct: 248 NKDAMWTAKGITYNSMGCASFDVYKKGEKVGNVSLSVPGPHNVNNSLAAIAVAYTCGCSM 307

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAISVLSQISP 365
           +     LS F     R +      N                  N A       +     P
Sbjct: 308 ENIAYGLSRFGGSHKRFELKGLVDNIKVIDDYAHHPSEVQATLNAAKSSNHNKIWCVFQP 367

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHV 424
           H   R  A L    +    + +  I         +   +     H   L D +     + 
Sbjct: 368 HTYTRTKAFLDRFSKSFGEADNIIITDIYAAREKDPGDI-----HSSMLADRIRENGGNA 422

Query: 425 HYSETMDGLFLFIQSSLVDGDVVV 448
            Y      +  ++   +  GD+++
Sbjct: 423 VYISDFQDIAEYLDKKVEPGDLIL 446


>gi|301167446|emb|CBW27028.1| putative UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bacteriovorax marinus SJ]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 115/382 (30%), Gaps = 64/382 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM------PVD 159
           SK  II++TG+ GKTTT  ++ +       +         +IG PL    +        +
Sbjct: 111 SKTKIISVTGTNGKTTTVTIIDLLARGAGCS----SFLGGNIGTPLATYALEVLSSKRSE 166

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
                 EL    L          +  +A I  I+  H   +  + + A AK  I + L+ 
Sbjct: 167 ASLITLELSSFQL----ESMDTFKSDVAAILNISANHGERYERVSDYARAKFSIADNLDD 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
           +  IF+     F +      + + ++   S         +  +       S +       
Sbjct: 223 SDNIFVGDLGGFEKEFNPSCNLIKLEVPRSADIFSGNVRESFQLIGEHNLSNLNF----- 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                                    +L          L      +G   R +   ++   
Sbjct: 278 ----------------------ATKLLETVGVDWKNGLEQLKEFQGVSYRLQKRPSREGL 315

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + +++ + N  +   A+        +       +LG   ++          L       
Sbjct: 316 YIFNDAKSTNWEASLTALKACEF--SYKNLPISLILG--GKLRGHGDQLESKL--DAHKE 369

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV----------- 448
           +IS V+L G     L +      +  Y +T+D +   I   +  G V++           
Sbjct: 370 SISKVFLYGESGKVLLEEFKEKFNCDYFKTLDEVIKNISVEVEKG-VILFSPAFPSFDLY 428

Query: 449 ---VKSSNSCGFYRLINLLLEE 467
              VK      F  LI+  LE 
Sbjct: 429 ENYVK--RGEHFDLLISEYLER 448


>gi|121612484|ref|YP_001000522.1| hypothetical protein CJJ81176_0854 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005456|ref|ZP_02271214.1| hypothetical protein Cjejjejuni_04415 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|87249382|gb|EAQ72342.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 313

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + +    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFF-----NNN-KKEITQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  AIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|119387199|ref|YP_918254.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
 gi|166224712|sp|A1BAL4|MURC_PARDP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119377794|gb|ABL72558.1| UDP-N-acetylmuramate--L-alanine ligase [Paracoccus denitrificans
           PD1222]
          Length = 475

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 131/414 (31%), Gaps = 61/414 (14%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A++KG          +       +PV     V  A   LA   RL+S    +AI G+
Sbjct: 76  ISTAIKKG-------NPELEEARRRGLPV-----VRRA-EMLAELMRLKSN---VAIAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +           N  +             ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDA---GGFDPTVINGGVIHAYGSNARAGAGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GSFNRLPATIAIVTNIDPEHMEHWGSFDALRKGFQDFVSNIPFYGLAVCCTDHPEVQSLV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ----------GKSMEVVHH 286
            +   L  + + +FG +  AD +    +  +  +  ++ LQ                   
Sbjct: 232 GR---LTDRRVATFGFNAQADVRAINLRYENGVAHFDIALQGEAELNEGEVPVIEGCTLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H   N L  + +   L        +AL+ F     R  R            I + Y
Sbjct: 289 MPGDHNVSNALAAVAVARHLGMKRAQIREALARFGGVSRRFTRVGEVDG----VTIIDDY 344

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAV-----LGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +P  + A +          +GR IAV        +  + +   +   +      +  I
Sbjct: 345 GHHPVEIAAVLKAA---RQATKGRVIAVHQPHRYSRLSSLFDDFCTCFNE----ADVVAI 397

Query: 402 SHVWLSGFHV------LALKDALPRSIHVHYSETMDG--LFLFIQSSLVDGDVV 447
           + V+ +G           L   L    H H    MD   L   ++     GD+V
Sbjct: 398 AEVYSAGEEPIPGASRDDLVAGLIAHGHRHARAVMDEGDLERLVREQARPGDMV 451


>gi|311281223|ref|YP_003943454.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
 gi|308750418|gb|ADO50170.1| UDP-N-acetylmuramate [Enterobacter cloacae SCF1]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 105/365 (28%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I    
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   +   A       + +   G  +         +      W       K  EV    
Sbjct: 222 SDINLKQTLALGCWSEQELVGEQGHWQAKKISTDASE------WEVWLDGEKVGEVKWGL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A +A           +R      +     + + + 
Sbjct: 276 VGEHNMNNGLMAIAAARHVGVQPGDAAQA----LGSFINARRRLELRGEANGVAVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L  +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLQALRGKVGGTARII--AVLEPRSNTMKMGVCKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   I  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPQHIPWQVAEVADACVQPAHWSADVDTLADMIVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
             LL 
Sbjct: 443 QKLLA 447


>gi|225851272|ref|YP_002731506.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Persephonella marina EX-H1]
 gi|225646453|gb|ACO04639.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Persephonella marina EX-H1]
          Length = 328

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 16/107 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRS-IAPQEA-FFAIKGPHYDGHDFILHAVQ 62
                + +   G  I +     +  +S  S       +  F +       G  F+    +
Sbjct: 1   MRLTRIAEITGGKLINLKDDIDIRSLS--SLEGAEEGDLTFVS-------GKKFLNLVYK 51

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
             A  ++   ++      +  P   VD       +L        +  
Sbjct: 52  TKASAIITGKEL-----DIDKPQIIVDKPDQVFYELIKVFYPDEEVK 93


>gi|307720528|ref|YP_003891668.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978621|gb|ADN08656.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 409

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 60/431 (13%), Positives = 118/431 (27%), Gaps = 94/431 (21%)

Query: 67  LVVVNTDMV----ASIGSLSIPVFGVDDVLGALNKLAVAA------------RLRSKATI 110
           LV+++ +        +  L      V     +L  L +                  K  I
Sbjct: 40  LVIIDKNHPSCDENYLDKLDEVELIVKSPGISLYNLGIDYKSYKFSSTTELLLKHFKNQI 99

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGM 169
           I +TG+ GK+T   ++   L +  K          +IG P       +D +   + EL  
Sbjct: 100 IGVTGTKGKSTLVTLIDSLLKNAGK----KSVLCGNIGTPAFDILENLDDETTIVMELSS 155

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
             L  + +  H+     A++T +   HL  +  ++E  SAK  IF   +K      N   
Sbjct: 156 HQLYHVNYSVHI-----AILTNLFEEHLDYYKDVDEYYSAKFNIFLHQKKNDIFIYNLPQ 210

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                                                         +    ++       
Sbjct: 211 KLTR---------------------------------------GYNVHENELKYNVDFNL 231

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   +      +  +           L      +    R     N    + I++S +  
Sbjct: 232 QNGFIHKSTLQILEKLKEILALDDAVYLRTIQEFKTLPHRLEFVKNIKGVSYINDSISTI 291

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P +   A+ +L  +          +LG     G      +  L + L   +I ++ L   
Sbjct: 292 PQATIEAVKILKNV-------DTLILG-----GNDRGVHYDVLIDFLQKSDIDNIILFSD 339

Query: 410 HVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK--SS----------NS 454
               + DAL    +   +     +        +      +V+    +S            
Sbjct: 340 TGKKIYDALHVKEKQKGLFIQNNLQESVKKAYNISRS--IVLFSPAASSFNEYKNFIERG 397

Query: 455 CGFYRLINLLL 465
             F  L+N L 
Sbjct: 398 DEFKSLVNQLK 408


>gi|256847983|ref|ZP_05553427.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715043|gb|EEU30020.1| folylpolyglutamate synthase [Lactobacillus coleohominis 101-4-CHN]
          Length = 439

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 94/312 (30%), Gaps = 26/312 (8%)

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASA 209
           +       D+D  I E+G+   G       +  P +  I T+   H+      I +IA  
Sbjct: 131 MFCYFADHDLDVVILEVGIG--GLYDSTNVIESPVVTAIVTVGYDHMKYLGSTIADIARQ 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA I +      T  L  D        AK H   +       ++     Q    +     
Sbjct: 189 KAGIIKNGVPMVTGNLPNDSQRVVTQVAKEHDCTVYQFGRDFRTTLVGHQTIYPELSYSG 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                 LQ  +        G +   N  + + +  +        +   +V          
Sbjct: 249 ------LQLHNERYRLSLAGDYQLANCGIAVTLAQLFMQADGLKLDQRAVRQALLNTKWP 302

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            R  L      +I +  +     +    ++   I    +G  + VL  +       + + 
Sbjct: 303 GRMELVNQEPMIILDGAHN----LPGMQALTETIRDDFKGHEVYVLVAIL----ADKQYE 354

Query: 390 IDLAEVLSLYNISHVWLS--GFHVL-------ALKDALPRSIHVHYSETMDGLFLFIQSS 440
           + L E+ SL N+     +  G +         A+   +P    +         F  + + 
Sbjct: 355 LMLGELASLSNVHITVTTFEGPYAGRKSADLGAVVKMIPSHHPIQMVPDWQQAFAKLATQ 414

Query: 441 LVDGDVVVVKSS 452
           +   DV+++  S
Sbjct: 415 VSTDDVILITGS 426


>gi|170076738|ref|YP_001733376.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. PCC 7002]
 gi|169884407|gb|ACA98120.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. PCC 7002]
          Length = 488

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 60/433 (13%), Positives = 123/433 (28%), Gaps = 56/433 (12%)

Query: 59  HAVQ--KGAGLVVVNTDMVASIGSLSIPV------FGVDDVLGALNKLAVAARLRSKATI 110
            A++   G   V+ +T +                 F   DVL AL           +   
Sbjct: 73  DAIEQHNGLPQVICSTAIGQENPEFQAAQSLGCHIFHRSDVLSALVA---------EYDS 123

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  ++             I                    ++ + E   S
Sbjct: 124 VAVGGTHGKTTTSSLIGYIFLVAGVDPTIIVGGEVD---AWDGNARLGQGNYLVAEADES 180

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +RP + V+T I   H  ++  ++++        +  ++           
Sbjct: 181 -----DGTLVKLRPQLGVVTNIELDHPDHYQSLDQVVEIFQTFAQQCDRLIACVDCPTI- 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                        +     +G                  +  +  +  +   +    +  
Sbjct: 235 ---------ATGVVPYQVGYGLQNLEQADYWATDIHYGATSTQATIWERGDRLGEINLAL 285

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA-- 348
             A N+   LG ++                   +G  +R+         TLID+  +   
Sbjct: 286 LGAHNLSNALGAIAAARCCGVPFEPIAEALASFQGAKRRFEIRGQYQGITLIDDYAHHPS 345

Query: 349 --------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
                             V++   PH   R  A   +  +  + +    I         N
Sbjct: 346 EIEVTLQAARLRAGQGRRVVAIFQPHRYSRTQAFFDEFAKAFKNADVTIITDIYSAGEKN 405

Query: 401 ISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-F 457
           + ++  +G    AL+ A+   +   V Y   +  L  ++   L  GD+V++      G  
Sbjct: 406 VDNL--TGE---ALQQAIAHQQDGDVAYYPDLQSLPTWLAPQLQTGDLVLL---LGAGNL 457

Query: 458 YRLINLLLEEFPA 470
            + I  LL +  A
Sbjct: 458 NQTIPSLLAQLSA 470


>gi|114570627|ref|YP_757307.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
 gi|122315581|sp|Q0AMW8|MURC_MARMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|114341089|gb|ABI66369.1| UDP-N-acetylmuramate--L-alanine ligase [Maricaulis maris MCS10]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 134/419 (31%), Gaps = 46/419 (10%)

Query: 44  FAI--KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAV 100
            AI  K  + DG           AG +VV++ +      L +     +  V  A   LA 
Sbjct: 58  VAIGHKAANVDG-----------AGAIVVSSAIKPDNPELVAARAAKIPVVRRA-EMLAE 105

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
             RL+     +A+ G+ GKTTT  ++ + + +       I           + A++ +  
Sbjct: 106 LMRLKFA---VAVGGTHGKTTTTSLVAVLMDAAGVDPTVINGGIISA--YGSNAKVGLGD 160

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
              +                 +R  +A++T I P H+ ++   + +  A  +  E L   
Sbjct: 161 WMAVEADESDG------SFLKLRSTVAIVTNIDPEHMEHYGTFDVLRQAFFQFVENLPFY 214

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G   L  D    + L ++        + ++G++  AD +L   K     +  +V+ + + 
Sbjct: 215 GFAVLCTDHPEVQSLASRVEDR---RVITYGQNPQADARLENLKMDPSGATFDVRFRLRG 271

Query: 281 MEVVHHGIGYHMAQNMLMTLG--IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +       +         L          ++            + G  KR      +  
Sbjct: 272 QDETVWRDIFLPMMGEHNVLNAVAALATARELGLTEAGAKTALGQFGGVKRRFTRTGEWK 331

Query: 339 FTLIDESYNANPASMKAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFH 389
              I + Y  +P  + A +    Q         + PH   R   +  D       + S  
Sbjct: 332 GAAIIDDYGHHPVEIAAVLKAARQAATGKVIAVMQPHRYSRLHDLFDDFSTCFNDADSVL 391

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVV 447
           +          I      G     L ++L    H    + T D +   +     +GDVV
Sbjct: 392 VTPVYTAGEDPIE-----GADQAHLVESLRSHGHRDAGATTRDAVAADVAKRAGEGDVV 445


>gi|94970655|ref|YP_592703.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|166222948|sp|Q1IKH1|MURC_ACIBL RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94552705|gb|ABF42629.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 134/420 (31%), Gaps = 36/420 (8%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +VV ++ + +    ++        V+     LA   RL+     IAI G  GKTTT 
Sbjct: 64  GAEVVVTSSAIDSRNPEVAEAHANHIPVIQRAEMLAELMRLKYG---IAIAGMHGKTTTT 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+   L+  +     I          +          + + E   S           + 
Sbjct: 121 SMVAAVLAGGELDPTVIVGGRVD---AMGSNARLGKSHYLVAEADES-----DRSFLKLW 172

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
              AV+T I   H+  +  +E++     E  + +   G +    D+     +  +     
Sbjct: 173 FIHAVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVVACNDNEPLRAILPRVRRRI 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM---EVVHHGIGYHMAQNMLMTL 300
           +    + G            +Q          ++ +     E +    G H  +N    +
Sbjct: 233 VTYGTTEGSDFLIRCVPCDSEQLLLGFLNRFSVEYRGKSLGEFLLRVPGLHNVRNATAAI 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            I   L    D    AL+ F   + R +       +     + + Y  +P  ++A ++  
Sbjct: 293 AIGVGLDIPADKIRAALAEFRGVDRRFQ----LKGKANDISVIDDYGHHPTEIRATLAAA 348

Query: 361 SQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
            Q           PH   R   ++ +       + S ++      S   I      G + 
Sbjct: 349 KQCGFRHIHVVFQPHRYTRTRDLMDEFASSFGDADSLYLLDIYPASEQPIE-----GVNT 403

Query: 412 LALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV-VKSSNSCGFY-RLINLLLEE 467
            AL   +         Y+++     +   ++   GD+++ + + N      +++  L  +
Sbjct: 404 EALARRITEVSGRATFYAKSFQVAAIMAATAAEPGDMILTLGAGNVSQLGPQILERLSAK 463


>gi|47097648|ref|ZP_00235167.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47013980|gb|EAL04994.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 105

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 399 YNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            N+  + + G     +        I VHY + ++            GD++++
Sbjct: 21  KNVKTLIVFGETADKIGRVGKIAGIEVHYVDNVEAAVPVAYRESAPGDIILL 72


>gi|194017884|ref|ZP_03056493.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
 gi|194010536|gb|EDW20109.1| UDP-N-acetylmuramate--alanine ligase [Bacillus pumilus ATCC 7061]
          Length = 432

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 78/459 (16%), Positives = 141/459 (30%), Gaps = 79/459 (17%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV--------NGISI---DSRSIAPQEAFFAIKGP 49
           M+PL     +L        G   +  +          I I   D  +I P     A    
Sbjct: 14  MSPL---AQILHDTGYTVQGSDIEKHIFTQKALEERNIKILPFDPDNIQPGMTVIA---- 66

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
              G+ F                  +    S  IPV         L +           T
Sbjct: 67  ---GNAFPD------------THPEIERALSEGIPVIR---YHKFLGEYMDTF------T 102

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            +AITG+ GKT+T  +L   + S K T   IG  +              + ++ +FE   
Sbjct: 103 NVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGDGSGMG---------KENSEYFVFEACE 153

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                + +      P  A++T I   H   FS I+++  A   +    +    I    DD
Sbjct: 154 YRRHFLSYH-----PDYAIMTNIDFDHPDYFSDIDDVFDAFQNMAL--QVKKAIIACGDD 206

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                ++AK        +  +G ++  DFQ R   + +E +  +V ++    +  +    
Sbjct: 207 EHLPKIQAK------VPVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAY 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +      + +  +    A     IK          R    +    Q    ++ + Y  +
Sbjct: 261 GNHNVLNSLAVIALCHYEAIDVELIKGALTTFGGVKRRFNEKVVGEQ----VLIDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  ++  I    Q  P  E     V          +Q F  + A+ L      +V+L   
Sbjct: 317 PTEIEVTIEAARQKYPDRE----IVAVFQPHTFTRTQQFLSEFADSLKKA--DYVYLC-- 368

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +  +   +I     E +       Q    +   V+
Sbjct: 369 ---DIFGSARENIGKLSIEDLREKIPQAQLIAEEDTSVL 404


>gi|283781670|ref|YP_003372425.1| hypothetical protein Psta_3911 [Pirellula staleyi DSM 6068]
 gi|283440123|gb|ADB18565.1| hypothetical protein Psta_3911 [Pirellula staleyi DSM 6068]
          Length = 297

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
             A  +GA   V +                VDD + AL +LA   R   +  I+ + G  
Sbjct: 68  QEAFARGAIGCVTSKHQALPWA--GAFSLEVDDPVAALVELAWQLRDGYRGKIVMVMGER 125

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              TT+ +    + +     +   + ++   +PL + ++    DF + EL
Sbjct: 126 SAETTQLVY--DVIASSWNASLCLASSSRPELPLEILQLETLDDFAVIEL 173


>gi|207721506|ref|YP_002251946.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
 gi|206586666|emb|CAQ17252.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum MolK2]
          Length = 550

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           GE        LA  ++ Y    V L G     ++ AL    + +  + T++       + 
Sbjct: 448 GEGKGQDFSPLAAPVAQYA-RAVVLIGRDAPQIRAALADSGVELVEAPTLEAAVQEAVAR 506

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 507 AQPGDAVLL 515


>gi|163760789|ref|ZP_02167869.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
 gi|162282111|gb|EDQ32402.1| UDP-N-acetylmuramate--L-alanine ligase [Hoeflea phototrophica
           DFL-43]
          Length = 474

 Score = 46.0 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 78/426 (18%), Positives = 133/426 (31%), Gaps = 49/426 (11%)

Query: 47  KGPHYD-GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVA 101
           KG     GH     A   G A +VVV+T +  S   L      +  V  V  A   LA  
Sbjct: 51  KGIEVHIGH----SAANLGDAEVVVVSTAIKKSNPELMAARERLLPV--VRRA-EMLAEL 103

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            R R     IAI G+ GKTTT  M+   L +       I     +            + +
Sbjct: 104 MRFR---NAIAIGGTHGKTTTTSMVATLLEAGGLDPTVINGGIIN---AYGTNARMGEGE 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           + + E   S           +   IAVIT I P HL ++   +   +A  +  E +   G
Sbjct: 158 WMVVEADES-----DGTFLKLPAEIAVITNIDPEHLDHYGTFDAARAAFRQFAENVPFYG 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS- 280
              +  D    + L ++        + ++G++  +D +    +     S  +V +  +  
Sbjct: 213 FGVMCLDHPEVQALVSRIEDR---RVITYGENPQSDVRFFNHRMDGPVSVFDVVINSRKT 269

Query: 281 ------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                  ++     G H   N +  + +   L    D   K L  F   + R        
Sbjct: 270 GETVELKDLRLPMPGKHNVSNAVAAIAVAFELGLTPDQISKGLGQFGGVKRRFTHTGSWN 329

Query: 335 NQGFFTLIDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                  I + Y  +P  +K             V++   PH   R  ++  D       +
Sbjct: 330 G----VEIFDDYGHHPVEIKAVLSAARDACQGRVIAVHQPHRFSRLSSLFDDFSACFNDA 385

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +    +   +       +       L +         V   +    L   I      GD
Sbjct: 386 NTV---MLAPVYAAGEDPIEGIDSAHLVMSMKAGGHRDVRLVDGPSALAPIIADIAKPGD 442

Query: 446 VVVVKS 451
            VV+  
Sbjct: 443 YVVLLG 448


>gi|332982069|ref|YP_004463510.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
 gi|332699747|gb|AEE96688.1| FolC bifunctional protein [Mahella australiensis 50-1 BON]
          Length = 433

 Score = 46.0 bits (107), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 89/308 (28%), Gaps = 26/308 (8%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  +VD+ + E+    LG     T+++ P ++VIT+I   H           + + 
Sbjct: 128 FCYFAEQNVDYAVIEV---GLGGRLDSTNVIDPLVSVITSIDYDHKDILGDTLAKIAYEK 184

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                  +   ++   D++   + +            S+   +  D  +        +  
Sbjct: 185 AGIIKPGRPVVVYPQQDEAMDVIKQVCQQRQSPLIEVSYSDIEAIDDSIDGQHFNYNEGK 244

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                           +G H   N    +  V +L   +  AI   ++           R
Sbjct: 245 WTFNRLY------IPLLGKHQLMNAATAITAVLVLRKYMGVAISDKAIAEGLSVTKWPGR 298

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             L      ++ +    NP   ++  + +    PH     +        +G L+      
Sbjct: 299 LELVHRQPYVLLDG-AHNPQGAQSLANAIKNYFPHNRVIMV--------LGILADKDVRA 349

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDG 444
           + EVL      ++  +        +A          ++     + ++             
Sbjct: 350 ILEVLVPLAA-YIITTRPDSPRAIEAERLLTLVKEMNVQGQAIDNIEFAVQTSLDMAEPD 408

Query: 445 DVVVVKSS 452
           D+VV+  S
Sbjct: 409 DLVVISGS 416


>gi|298253385|ref|ZP_06977177.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
 gi|297532780|gb|EFH71666.1| UDP-N-acetylmuramyl tripeptide synthase [Gardnerella vaginalis 5-1]
          Length = 596

 Score = 45.6 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 56/502 (11%), Positives = 124/502 (24%), Gaps = 88/502 (17%)

Query: 20  GIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIG 79
            I         + D+R I      F IKG ++   +++L A  KG    V          
Sbjct: 61  NIDADECFTNATYDTRDITLGTLLF-IKG-NFK-SEYLLDADNKGLAAYVAEQSYAQYTK 117

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYA- 138
           ++      V D   A++ LA A     +  +  I  +  K  T             ++  
Sbjct: 118 AVG---LIVTDAKKAMSVLAAAFFGNPQEKLTIIGITGTKGKTTTAYFTHAILNSHSHGK 174

Query: 139 ---CIGSYNNHIGVPLTLARM--------PVDVDFGIFE------LGMSHLGEIRFLTHL 181
                   N   G     + +           +   +        + +S         + 
Sbjct: 175 AALFSSVDNCVDGKNYVESNLTTPESFDAFKMMREAVDNGMKYLVMEVSSQAYKVNRVYG 234

Query: 182 VRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFEG----------------------- 216
           ++  +A    I+P H+S       E+    K +I                          
Sbjct: 235 LKFDVAAFLNISPDHISPIEHPTFEDYLYCKRQIIANTKRLVLNSDTDHADLLLQDAERN 294

Query: 217 --------------------------LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
                                           I      +  +  +  +       + + 
Sbjct: 295 NVLVTTFARIKKDEIEGAACENNNFDDLDDDCINYCAPANDDDYTELLTPDYIAMPVENS 354

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                A     +     +  + E        E      G    +N L  + I   L  + 
Sbjct: 355 ESHCIAMRDSSEDDDYEDNDYEEDVHYCPIDEFALSIAGDFNYENALAAIAIAGELGINQ 414

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           DT + AL      +  G+             + + Y  N  S K+ +  + +       R
Sbjct: 415 DTDLHALHAIENVKISGRMEVFKDTHSNMIAVVD-YAHNYISTKSVLDFVEERYGKFNPR 473

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----FHVLALKDALPR-----S 421
              + G     G+ +     ++ E         ++ +       V+ + + +       +
Sbjct: 474 ITLITGS---TGDKAVDRRKEIVEAAQNRIEQFIFTTEDTDTEDVMHICEDMQSYVTNTN 530

Query: 422 IHVHYSETMDGLFLFIQSSLVD 443
           +             +  +   +
Sbjct: 531 VSSRIIIDRAEAIEYAYNDAAN 552


>gi|114321868|ref|YP_743551.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|119371914|sp|Q0A526|LPXD_ALHEH RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|114228262|gb|ABI58061.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 352

 Score = 45.6 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISI--DSRSIAPQEAFFAIKGPHYDGHDFIL 58
           M    T  +L + +    +G  P   +  ++   D     P        G   + + ++ 
Sbjct: 1   MTETVTVSELAEGLGAELVGK-PTRVIRRVATLCD---AGPDAI-----GFCSNAN-YLE 50

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                GAG V+V  + VA   + +     VDD   A   +A       +  
Sbjct: 51  DLRATGAGAVIVRAEHVAECPTTA---LVVDDPYYAYAAVATRLHPAERPP 98


>gi|320450519|ref|YP_004202615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
 gi|320150688|gb|ADW22066.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermus
           scotoductus SA-01]
          Length = 417

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 96/367 (26%), Gaps = 70/367 (19%)

Query: 92  LGALNKL----AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           L A   L    A  A   S A II ITG+ GKT+T       L          G+     
Sbjct: 74  LKARGALILGEAELAYRLSPAPIIGITGTAGKTSTTLFTAHLLRGQGLKALEGGN----- 128

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   L  +  + +  + EL    L       H+ RP +AV+  +   HL     +E   
Sbjct: 129 -VDPPLVSVVDEAEVAVAELSSFQL----ERIHVFRPRVAVLLNLGVDHLDRHGSVEAYH 183

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
            AK  + + L     +  N  D         S A                          
Sbjct: 184 QAKLNLLKNLTPEDALVYNEGDPKVRQAALASPAR------------------------- 218

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
                             +       +  L        L                     
Sbjct: 219 -----------LYPFTPGNSPRETNLRAALEATRAYLELLGRPLNTDLLQESLKTLPSPP 267

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R++    +G    ID+S      S+ AA+                +LG     GE   +
Sbjct: 268 HRFQIFARKGEVVFIDDSIATRTPSVAAALEAAPAPIAW-------ILG-----GEDKGA 315

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD------GLFLFIQSSL 441
               L  +LS   +  V   G     + +AL   + V      D               L
Sbjct: 316 DLEALRPLLSR--VRVVLAIGRDGPKMAEALGGGVEVVVLPQTDGRAALRQAVAEALKRL 373

Query: 442 VDGDVVV 448
             G V++
Sbjct: 374 ERGSVLL 380


>gi|47779372|gb|AAT38601.1| predicted UDP-N-acetylmuramate: L-alanyl-diaminopimelate ligase
           [uncultured gamma proteobacterium eBACHOT4E07]
          Length = 432

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 116/349 (33%), Gaps = 42/349 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              + AI+G+ GKTTT  ML        +    +    +        +         + E
Sbjct: 100 NRNVFAISGTHGKTTTSYMLAHIFLDQGREIGYLVGGISDD---FDNSACLGKDPIFVIE 156

Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S   + R       P   +I  I   H   F+ IE++      + + ++ +G I 
Sbjct: 157 ADEYDSAFFDKRSKFIHYSPTNLIINNIEFDHADIFNDIEDVKKQFHHLIKIIKSSGNII 216

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DDS  + +  K        I S G   + +            S   +          
Sbjct: 217 YFDDDSTSKEVIEKGIWCSKIGINSNGVKADFE------------SKELIIDDEIFQLNE 264

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              IG H  +N + ++    +       +I +L  F   + R    +       +    +
Sbjct: 265 LPLIGEHNFKNYVCSILAAKLEGISETESINSLKKFKGVKRRMDFIKEISGIRIY----D 320

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSLYN-I 401
            +  +P ++K + S +       +     +LG + E+G    S  +H +   +++ +  +
Sbjct: 321 DFAHHPTAIKLSCSAIRNKYSDKK-----ILG-LIELGSNTMSSGYHKE--NLINSFGSL 372

Query: 402 SHVWLSGFHVL-ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               +   +    + +A          ++ + L   ++  + D D++++
Sbjct: 373 DEFLMLDPNKNYKINNA---------FDSENELLKNLEEKIFDYDIILI 412


>gi|257483446|ref|ZP_05637487.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330987135|gb|EGH85238.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011578|gb|EGH91634.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 486

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 136/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +  +     +
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPQVKRPTL 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
               ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 246 ----TYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDYGHHPREVAAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|256372024|ref|YP_003109848.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008608|gb|ACU54175.1| UDP-N-acetylmuramate/alanine ligase [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 70/399 (17%), Positives = 133/399 (33%), Gaps = 52/399 (13%)

Query: 65  AGLVV-VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   +  +   +A+  +  +PV    ++L AL              ++A++G+ GKTTT 
Sbjct: 75  ASTAIPSSNVELAAARARGVPVLSRAELLAALTA---------GKQVVAVSGTHGKTTTT 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+  AL +     + +     +       A +       + E   S    +    H   
Sbjct: 126 AMIAQALQAADLAPSWVIGAELNEAGASGHAGIGS---LFVVEADESDATFLAVDRH--- 179

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             +AV T + P HL ++   + + ++      G        +  DD     L  +     
Sbjct: 180 --LAVATNLEPDHLDHYGSFDALVASFEAFVGGSALAP--VICVDDPRLAALAPEGA--- 232

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGI 302
                ++G ++ A  Q+R        S  E  L  +    +    +G H  +N    +  
Sbjct: 233 ----LTYGVAEAARLQIRNPVLTPTHSAFECFLDHRRLGSIELGVLGMHNVRNGAAAVAA 288

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              + A  D    AL  +     R +  R          I + Y   P  + A +    Q
Sbjct: 289 ALSVGAPFDAVALALRRYVGVARRFQFKRELRGAR----IIDDYAHLPGEITATLQAARQ 344

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH--------- 410
           +   G GR + V          ++   ++L   L   +   ++ V+ +G           
Sbjct: 345 L---GSGRIVVVFQPHRY--SRTKLLGVELGRALGDADEVVVTDVYAAGEEPIPGVSGEV 399

Query: 411 -VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              A  + L      H+      L  F+ S +  GDVV+
Sbjct: 400 VWRAAAERL--GERAHWVADRGALAAFVASVVRPGDVVL 436


>gi|152996626|ref|YP_001341461.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
 gi|189028999|sp|A6VYJ7|MURC_MARMS RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150837550|gb|ABR71526.1| UDP-N-acetylmuramate--alanine ligase [Marinomonas sp. MWYL1]
          Length = 473

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 67/403 (16%), Positives = 130/403 (32%), Gaps = 45/403 (11%)

Query: 65  AGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A ++VV+T +      +       IP+     V  A   LA   R R     IA+ G+ G
Sbjct: 76  AHVIVVSTAINEQNPEIIWGKEHRIPI-----VRRA-EMLAELMRYRHG---IAVAGTHG 126

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L++  +    +                     + + E   S    +   
Sbjct: 127 KTTTTSLMASILAATGEAPTFVIGGRL---TSAGANAQLGSSAYLVAEADESDASFLH-- 181

Query: 179 THLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
              ++P   ++T I   H+  +    E++     E    L   G   L  DD     +  
Sbjct: 182 ---LQPQTVIVTNIDEDHMDTYDGDFEKVKHTFIEFVHNLPFYGLAVLCVDDENVREILP 238

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNM 296
                 +    ++G  + ADF   +  Q                 ++     G H   N 
Sbjct: 239 TLSRPVL----TYGIDQEADFYATEIVQTGRYCEFLAHRPEGEPLKIRLPMPGRHNVLNA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL-NQGFFTLIDESYNANPASMKA 355
           L T+ + + L  D       L  F     R +  +      G   +  + Y  +P+ + A
Sbjct: 295 LATIAVATDLGVDASAIQAGLMGFEGVGRRFQEQKPLALPNGSNVMFVDDYGHHPSEVLA 354

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-------- 407
            I  +    P        V+         ++  + D   VLS  ++  +           
Sbjct: 355 TIKAIRAGWPEK----RLVMVYQPHRYTRTRDLYEDFVRVLSQVDVLLLLDVYSAGEAPI 410

Query: 408 -GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
            G    +L  ++ +  +V   +  +   L   + + L +GD++
Sbjct: 411 NGADSRSLCGSIRQRGNVDPIHVGSEADLRSILSNVLREGDLL 453


>gi|221632096|ref|YP_002521317.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
 gi|221157253|gb|ACM06380.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermomicrobium
           roseum DSM 5159]
          Length = 469

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 81/298 (27%), Gaps = 33/298 (11%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           PHIAV+T+I+P HL  +   E    AK  I           +N DD      +       
Sbjct: 187 PHIAVLTSISPDHLDRYPSFEAYIDAKRAIARHQRPGDWFVVNRDDPVAWACRDAGCGKV 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +      G S  A ++  +          ++  +                   LM    V
Sbjct: 247 VPFGRDDGVSDGAFWRDDRLIWRWGGEEQDLLRRSDF---------------PLMGEHAV 291

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
               A    A+   +         +      ++        + +    S   A + +   
Sbjct: 292 GNALAAAAAALLRGASPAHVAAALREAEPVPHRLEHVARLGTVDFVNDSAATAPAAVLAA 351

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSI 422
                 R I ++G     G         +A  +       V L G      + AL     
Sbjct: 352 LATFRERPIVLIGGGAAKGVSLAELAEAVARQVRA----VVLLDGTATPDYQAALRAAGA 407

Query: 423 HVH-YSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
            V    ++M+            G VV++    +S             F   +  L+ E
Sbjct: 408 RVEGPYQSMEEAVRRAAELAEPGAVVLLSPGCASFGLFRDEFHRGESFREAVRQLVRE 465


>gi|260435255|ref|ZP_05789225.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
 gi|260413129|gb|EEX06425.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Synechococcus sp.
           WH 8109]
          Length = 461

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 58/390 (14%), Positives = 114/390 (29%), Gaps = 51/390 (13%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG--VPLTLA 154
            LA  A  +     I ITG+ GKTT   +L+  L +   T    G+             +
Sbjct: 101 DLAWDALQQ--IPWIGITGTNGKTTVTHLLSHVLEASGLTAPMGGNMGLSAADLAFQIGS 158

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 D+ + EL    +         V P I + TT+ P HL     +E   + K  + 
Sbjct: 159 GATPRPDWLVMELSSYQI----EAAPAVAPKIGIWTTLTPDHLERHGSLEAYRAIKRGLL 214

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E              +  +    +      +  +   +    D Q        E      
Sbjct: 215 ER-------SECALFNADDPDLRQQRRSWDRGTWVSSEGARPDDQPADLWIDDEGMVRNN 267

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +           G H  QN+L+       +         AL  F     R        
Sbjct: 268 ATR-LFAADALAMPGRHNRQNLLLVAAASLKVGLSPQQIADALRTFPGVPHR---LEKLG 323

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS---QSFHID 391
                ++ ++S   N  + + A+  +        G  + + G   + G+     +  H  
Sbjct: 324 TLAGASVFNDSKATNYDAAEVALRAVQ-------GPVVVLAGGQTKQGDAGGWLEQLHTK 376

Query: 392 LAEVLSLYNISHVWLSG-FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG--DVVV 448
              ++       V+ +G   + +L  A      +     ++      ++++       ++
Sbjct: 377 ACSLI-------VFGAGADELASLAKAAGYPGELQQCPELESAVNLAETAVQRHQASTLL 429

Query: 449 V---KSS---------NSCGFYRLINLLLE 466
           +    +S             F  LI  LL+
Sbjct: 430 LSPACASFDQYRDFEARGEHFRTLIQPLLD 459


>gi|150397282|ref|YP_001327749.1| UDP-N-acetylmuramate--L-alanine ligase [Sinorhizobium medicae
           WSM419]
 gi|166224733|sp|A6UB84|MURC_SINMW RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|150028797|gb|ABR60914.1| UDP-N-acetylmuramate--alanine ligase [Sinorhizobium medicae WSM419]
          Length = 471

 Score = 45.6 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 73/420 (17%), Positives = 136/420 (32%), Gaps = 53/420 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A ++VV+T +      L         V  V  A   LA   R R   
Sbjct: 58  GHK----AENLGDAEVIVVSTAIKKDNPELIAAREKFLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  M+   L +       I     +              ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSMVAALLDAGGLDPTVINGGIIN---AYGTNARMGAGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   IAV+T I P HL ++   + + SA  +  E +   G   L  D
Sbjct: 165 ES-----DGTFLKLPADIAVVTNIDPEHLDHYGSFDAVRSAFRQFVENVPFYGFGVLCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------M 281
               + +  K     +    ++G++  AD +    +     S  +++++ +         
Sbjct: 220 HPEVQSMVGKIEDRKVV---TYGENPQADVRFHNIRMDGATSIFDIEIRRRRTGQVIEIK 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++     G H   N    + +   L    +   + ++ F   + R               
Sbjct: 277 DLRLPMPGRHNVSNATAAVAVAQRLGIKPEDIARGIASFGGVKRRFTLTGEWNGAR---- 332

Query: 342 IDESYNANPASMK---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  +K             +++   PH   R  ++  D       + +  +  
Sbjct: 333 IFDDYGHHPVEIKAVLRAAREACQGRIVAVHQPHRYSRLSSLFEDFTSCFNDADTILLAP 392

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
                   I      G +  AL + +  + H    +    + L   +      GD VV++
Sbjct: 393 VYSAGEEAID-----GVNSEALVNRIKAAGHRDARHISGQEALAPVVAKIAQPGDFVVLL 447


>gi|291327122|ref|ZP_06127070.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
 gi|291311637|gb|EFE52090.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Providencia rettgeri DSM 1131]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 109/371 (29%), Gaps = 29/371 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    +  F + E   
Sbjct: 93  VLAVAGTHGKTTTAGMLA---WILEDCGYKPGFLIGGVPGNFDVSAKIGESPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   V+  +   H   F  +E I      +   +  +G IF   
Sbjct: 150 YDCAFFDKRSKFVHYSPKTLVLNNLEFDHADIFENLEAIQKQFHHLVRIVPASGKIFTPD 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D+  + +         +               +  K   + S   V  Q + +  V   
Sbjct: 210 NDNHLKQVIGMGCWSEQE------LVGGEHGGWQAEKLSHDGSHFAVYYQQEKVGEVTWS 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N+   L  ++          +A           +R      +   ++ D+  +
Sbjct: 264 --QVGNHNIQNALMAIAAAHHVGVPVKEACLALDSFINARRRLELRGVENGVSVYDDFAH 321

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHVWL 406
              A     ++ L  +     G    +   + E    +    I+  ++         V+L
Sbjct: 322 HPTA----ILATLEALRSKVGGTSRIL--AVLEPRSNTMKMGINKNDIAPALGRADEVFL 375

Query: 407 SGF-HVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----R 459
               ++  +   +         +S  ++     I  +   GD ++V  SN  GF     +
Sbjct: 376 FQPANIPWMVTDIAEKCVQPARWSADIEAFTNMIIETAQPGDHILV-MSNG-GFSGIHGK 433

Query: 460 LINLLLEEFPA 470
           L+  L  +   
Sbjct: 434 LLAGLKAKAET 444


>gi|294789606|ref|ZP_06754840.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Simonsiella muelleri ATCC 29453]
 gi|294482407|gb|EFG30100.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Simonsiella muelleri ATCC 29453]
          Length = 341

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 19/179 (10%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQ 62
           + T   ++  + G   G     ++  I+  +         F A          +    ++
Sbjct: 1   MLTLQQIIYELGGELRGN--NVYIKSIAP-AEQALANNITFLANP-------KYKQEVLE 50

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             AG ++V+        + ++    V D      ++A          I+  T  V  T  
Sbjct: 51  SKAGAIIVSEKSAELFPNRNL--IVVSDPYLYFAQVARLFH-----PIVVATAGVHPTAV 103

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPVDVDFGIFELGMSHLGEIRFLTH 180
            E       S +         +  +G    + A   V+    + +  + H     +   
Sbjct: 104 IEDSAHVPESCEIGANVYIGAHTVLGERCRILANSVVEHGCCVGDDTVLHPNVTVYHGC 162


>gi|153009075|ref|YP_001370290.1| UDP-N-acetylmuramate--L-alanine ligase [Ochrobactrum anthropi ATCC
           49188]
 gi|166224711|sp|A6WZQ7|MURC_OCHA4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|151560963|gb|ABS14461.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum anthropi ATCC
           49188]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 85/461 (18%), Positives = 148/461 (32%), Gaps = 62/461 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQ 62
            ++L  +  H  G            DS ++        E F         GH     A  
Sbjct: 24  AEVLHNLGYHVQGSDQS--------DSANVQRLREKGIEVFV--------GHK----AEN 63

Query: 63  KG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            G A +VVV+T +  +   L      +  ++     LA   R R     +AI G+ GKTT
Sbjct: 64  IGDAEVVVVSTAIKKNNPELVAAREKLLPIVRRAEMLAELMRFRHA---VAIGGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L +       I     +            D D+ + E   S           
Sbjct: 121 TTSMVAALLDAGHLDPTVINGGIIN---AYGTNARMGDGDWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IAV+T I P HL ++   E + +A A+  E +   G   +  D    + L ++   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFENVRAAFAQFVENVPFYGFGVMCLDHPEVQALVSRIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQN 295
                I ++G++  AD +    +     S  +V ++ +  E            G H   N
Sbjct: 233 R---RIVTYGQNPQADVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               + +   L    D   + L  F   + R               I + Y  +P  ++A
Sbjct: 290 ATAAIAVAHELGISADDIRRGLGSFGGVKRRFTHTGTWNG----VEIFDDYGHHPVEIRA 345

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFH---- 410
            +          +GR +A++         S                ++ V+ +G      
Sbjct: 346 VLKAA---REATKGRVVAIVQPHRYTRLASLFDEFAACFNDADTVIVTPVYTAGEDPIEG 402

Query: 411 --VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
               AL   +  + H    Y+   + L   + S    GD V
Sbjct: 403 VNSEALVSRIKTAGHRDARYASGPEALAPLVASIAEPGDFV 443


>gi|119717289|ref|YP_924254.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nocardioides
           sp. JS614]
 gi|119537950|gb|ABL82567.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Nocardioides sp.
           JS614]
          Length = 488

 Score = 45.6 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 109/375 (29%), Gaps = 46/375 (12%)

Query: 97  KLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +LA   R    +   + +TG+ GKTTT +ML   L +             ++G+P+  A 
Sbjct: 110 ELAWRLRDPDHRTPWLCVTGTNGKTTTVQMLDSILRAAGLR----SIAVGNVGLPIVEAV 165

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           M  +  D    EL    L     ++       A +  +A  HL  +S     A+ K  I+
Sbjct: 166 MDPEPYDVLAVELSSFQLHYTDSMSA----EAAAVLNVAEDHLDWYSSFGAYAADKGRIY 221

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E          N  D   E L  ++  +       F         +   +          
Sbjct: 222 E--RAQKACVYNVADPETERLVREADVVEGARAVGFTLGMPGVGMVGLVEDILADRAFIE 279

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF------HPKEGRGK 328
           Q    + E+         +        I + L A        +S                
Sbjct: 280 QRDTSAAELCTISDLALHSPGGAAPHNIANALAAAALARAHGVSQGAVRDGLRAFRPDRH 339

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R       G  T +D+S   NP + ++++     +     G               ++  
Sbjct: 340 RIAVVGAAGGVTWVDDSKATNPHAAQSSLLAYEPVVWIAGGL--------------AKGA 385

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSET-----------MDGLF 434
           H D         +  V L G     +  AL R    + V   E            M+ + 
Sbjct: 386 HFDDLVRAVRDRLRGVVLLGRDRDVIAGALSRHAPDVPVIVVEDDETEGDHGGRAMERVV 445

Query: 435 LFIQSSLVDGDVVVV 449
                    GD V++
Sbjct: 446 GAAAELARPGDTVLL 460


>gi|330950223|gb|EGH50483.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 458

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 55  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 105

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 106 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 157

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 158 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 213

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 214 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 273

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 274 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGG 333

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 334 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 389

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 390 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 425


>gi|330895226|gb|EGH27564.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 486

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|302185268|ref|ZP_07261941.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           syringae 642]
          Length = 486

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|300899372|ref|ZP_07117631.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
 gi|300357032|gb|EFJ72902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 198-1]
          Length = 445

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 111/368 (30%), Gaps = 30/368 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 373 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 462 NLLLEEFP 469
             LL+  P
Sbjct: 431 QKLLDGLP 438


>gi|289624983|ref|ZP_06457937.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647041|ref|ZP_06478384.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488536|ref|ZP_07006566.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156877|gb|EFH97967.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 486

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A I+ +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVINAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|139437199|ref|ZP_01771359.1| Hypothetical protein COLAER_00338 [Collinsella aerofaciens ATCC
           25986]
 gi|133776846|gb|EBA40666.1| Hypothetical protein COLAER_00338 [Collinsella aerofaciens ATCC
           25986]
          Length = 468

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 25/305 (8%)

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
           P+         ++ + EL    +     L     P +AV+  I P HL      +  A A
Sbjct: 148 PVNEIDGRAHNEWFVAELSSYQIATTTELH----PRVAVLLNITPDHLGWHKSHKNYALA 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K ++F+ +     + ++ +D+         +  G +      K    + +        + 
Sbjct: 204 KIKLFDNMVDDDLVVVDVEDAGIHEFDEYIYTPGRRIC----KVAFDEPEGEDAAFVRDG 259

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +      ++  +    +      N++  L   +   A               +    R
Sbjct: 260 KMIVRLKGVETPLIATSELKISGHHNVINALCAATAALAVGADVDGVCRGLASFQPLEHR 319

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       +++S   N  +++ A++         +   I +LG     G    +  
Sbjct: 320 VEPCGEIDGVRYVNDSKATNTDAVEKALTAF------PDDDVILLLG-----GHDKGTPL 368

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS-----IHVHYSETMDGLFLFIQSSLVDG 444
            D A V+   N+  V   G        A+  +     + +  ++ +       +S    G
Sbjct: 369 TDFARVVMD-NVRSVVCFGDARERFTAAMDEADVDGDVDIAQADDLRDAVDVARSLSSRG 427

Query: 445 DVVVV 449
           DV+++
Sbjct: 428 DVILL 432


>gi|313837456|gb|EFS75170.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA2]
 gi|314929334|gb|EFS93165.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL044PA1]
 gi|314971663|gb|EFT15761.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA3]
 gi|328906998|gb|EGG26764.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium sp. P08]
          Length = 471

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 61/398 (15%), Positives = 117/398 (29%), Gaps = 37/398 (9%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL------NKLAVAARLRSKATIIAITGSV 117
           GA  VVV++ +      L      V+     L        LA     R     I+I G+ 
Sbjct: 74  GARTVVVSSAIRPDNPEL------VEAHRLGLRIWHRSAALAALMLGREG---ISIAGTH 124

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   L       + +             +      +  + E   S    +++
Sbjct: 125 GKTTTTGMVATMLDHAGADPSYVIGSPLA---ATGKSSHLGGGEAFVVEADESDGSFLQY 181

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
            + +      VIT +   HL N+   +        +     +   +  N DD     L  
Sbjct: 182 PSQI-----VVITNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELAC 235

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
           +  + G   + ++G+S+ A+ +L       + +   +        +     G +   N  
Sbjct: 236 RLESTGTVRVVTYGESEQAEVRLVDLDLNGKAASATLVHGPTQGRLELQVPGRYNLSNAA 295

Query: 298 MTLGIVSILTADVDTAIKALSVFHP-------KEGRGKRYRCALNQGFFTLIDESYNANP 350
               + S+L       +  ++ F                          T +  +  A  
Sbjct: 296 AAYCVGSLLGISHRDLLAGIASFTGTLRRFQLVGRVNDVSIFDDYAHHPTELRATLGAAR 355

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            ++     V++   PH   R    +G   E G         +   +       +   G  
Sbjct: 356 RAVTGQGRVIACFQPHLFSRTRDFVG---EFGSALTLVDRVIVSDIYPAREDPI--PGVT 410

Query: 411 VLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + DA L       Y      L   +   +  GD+V
Sbjct: 411 GELVHDAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|218247349|ref|YP_002372720.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8801]
 gi|218167827|gb|ACK66564.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8801]
          Length = 494

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 121/418 (28%), Gaps = 50/418 (11%)

Query: 68  VVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +  +            P+F   DVL AL          S    IA+ G+ GKTT
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTT 155

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I                     + + E   S           
Sbjct: 156 TSSLVGYVLLKAGLDPTIIVGGEVD---AWEGNAHLGSSKYLVAEADES-----DGSLVK 207

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+T I   H  ++  +E++           E                       
Sbjct: 208 HSPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQCEILVGCIDCETV---------RSQ 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L     YS   +KNAD+ ++     ++ +     +      ++     G H   N L  +
Sbjct: 259 LNPTITYSLDPTKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIPGEHNVSNALAAV 318

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  D      AL+ F   + R +               + Y  +P+ ++A +S  
Sbjct: 319 AVGRKLGLDFQVIADALATFGGAKRRFEH----RGYSNGITFIDDYAHHPSEIQATLSAA 374

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGF------HVL 412
                     R+  +         +           +   +  S ++ +G          
Sbjct: 375 RSKVDQNGSSRVVAIFQPHRYSRTATFLADFAQAFQAADLVILSDIYSAGEVNIHNITGQ 434

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEF 468
            L +A+      V Y   +  L   +   L  GD+ +       G   ++I  ++  +
Sbjct: 435 DLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALF---LGAGNLNQIIPQVIARY 489


>gi|289762319|ref|ZP_06521697.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
 gi|289709825|gb|EFD73841.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           GM 1503]
          Length = 390

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 27/299 (9%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     + +   AKA +F+           
Sbjct: 74  MEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAV 133

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       + A    T+ +  +  +             Q +  +   G    +   
Sbjct: 134 VCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIR 193

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L+ L I+  +    + A+  L          +  R         L    Y
Sbjct: 194 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LALVDY 248

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++++ ++ L+    H + R   V G     G+        +  + +      V +
Sbjct: 249 AHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVV 300

Query: 407 SGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L  A          E            +    GDVV++  K 
Sbjct: 301 TDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 359


>gi|289754268|ref|ZP_06513646.1| predicted protein [Mycobacterium tuberculosis EAS054]
 gi|289694855|gb|EFD62284.1| predicted protein [Mycobacterium tuberculosis EAS054]
          Length = 373

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 27/299 (9%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     + +   AKA +F+           
Sbjct: 57  MEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAV 116

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       + A    T+ +  +  +             Q +  +   G    +   
Sbjct: 117 VCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIR 176

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L+ L I+  +    + A+  L          +  R         L    Y
Sbjct: 177 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LALVDY 231

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++++ ++ L+    H + R   V G     G+        +  + +      V +
Sbjct: 232 AHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVV 283

Query: 407 SGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L  A          E            +    GDVV++  K 
Sbjct: 284 TDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 342


>gi|332300742|ref|YP_004442663.1| FolC bifunctional protein [Porphyromonas asaccharolytica DSM 20707]
 gi|332177805|gb|AEE13495.1| FolC bifunctional protein [Porphyromonas asaccharolytica DSM 20707]
          Length = 441

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +    +A+   +      +++     + +    GD++ V  SN      ++  LL+ +
Sbjct: 376 EELQQRAEAI--GLRGRAYPSVEEALREVVALANAGDLIFVGGSNF-----IVAELLKSY 428

Query: 469 PAIQ 472
           P IQ
Sbjct: 429 PLIQ 432


>gi|313886931|ref|ZP_07820634.1| bifunctional protein FolC [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923628|gb|EFR34434.1| bifunctional protein FolC [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 441

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +    +A+   +      +++     + +    GD++ V  SN      ++  LL+ +
Sbjct: 376 EELQQRAEAI--GLRGRAYPSVEEALREVVALANAGDLIFVGGSNF-----IVAELLKSY 428

Query: 469 PAIQ 472
           P IQ
Sbjct: 429 PLIQ 432


>gi|218753881|ref|ZP_03532677.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis GM 1503]
          Length = 394

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 27/299 (9%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     + +   AKA +F+           
Sbjct: 78  MEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAV 137

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       + A    T+ +  +  +             Q +  +   G    +   
Sbjct: 138 VCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIR 197

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L+ L I+  +    + A+  L          +  R         L    Y
Sbjct: 198 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LALVDY 252

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++++ ++ L+    H + R   V G     G+        +  + +      V +
Sbjct: 253 AHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVV 304

Query: 407 SGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L  A          E            +    GDVV++  K 
Sbjct: 305 TDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 363


>gi|115524121|ref|YP_781032.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
 gi|122296545|sp|Q07PT2|MURC_RHOP5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115518068|gb|ABJ06052.1| UDP-N-acetylmuramate--L-alanine ligase [Rhodopseudomonas palustris
           BisA53]
          Length = 467

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 75/405 (18%), Positives = 129/405 (31%), Gaps = 37/405 (9%)

Query: 63  KGAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            GA +VVV+T +      L +     +  V  A   LA   RL+S    +AI G+ GKTT
Sbjct: 65  AGADVVVVSTAIKRDNPELLAARAQRIPVVRRA-EMLAELMRLKS---CVAIAGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L + +     I     +              ++ + E   S           
Sbjct: 121 TTSMVAALLDAGEFDPTVINGGIIN---AYGTNARLGAGEWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +A++T + P HL +F   E + +A  +  E +   G   +  D    + L  K   
Sbjct: 173 LPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCIDHPVVQALVGKIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSMEVVHHGIGYHMAQ 294
                I ++G++  AD +L   K     S  +V  +        +  ++     G H A 
Sbjct: 233 R---RIITYGENPQADVRLLDLKPNGGASTFKVAFRDRKANTAHEIADLKLPMPGRHNAL 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    + +   L    DT  KAL+ F     R  +            I + Y  +P  + 
Sbjct: 290 NATAAIAVAHELGLSDDTIRKALAGFGGVRRRFTKTGDWNG----VSIIDDYGHHPVEIA 345

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----- 409
           A +    +           V        +                 ++ V+ +G      
Sbjct: 346 AVLKAARE--STKTKVIAVVQPHRFTRLQSLFEEFCTCFNDADAVIVAEVYPAGEAPIPG 403

Query: 410 -HVLALKDALPRSIHVHYSETMDGLFLF--IQSSLVDGDVVVVKS 451
                    L    H       +   L   + S    GD VV+  
Sbjct: 404 IDRDNFVLGLRAHGHREVIPLQESAALAGVVHSIAKPGDYVVLLG 448


>gi|220927180|ref|YP_002502482.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium nodulans
           ORS 2060]
 gi|254766011|sp|B8IN63|MURC_METNO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219951787|gb|ACL62179.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium nodulans ORS
           2060]
          Length = 471

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 121/414 (29%), Gaps = 34/414 (8%)

Query: 43  FFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           F   +G +      +  A      LVVV+T +      L++       V+     LA   
Sbjct: 56  FVGHRGEN------LADA-----ELVVVSTAIRRDNPELALARERRLPVVRRAEMLAELM 104

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R +S    +A+ G+ GKTTT  ++   L +       I     +            + D+
Sbjct: 105 RFKS---CVAVAGTHGKTTTTSLVATLLDAGGLDPTVINGGIIN---AYGTNARMGEGDW 158

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S           +   IA++T I P HL +F   + I  A     + +   G 
Sbjct: 159 MVVEADES-----DGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDNIPFYGF 213

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             +  D    + L  +        I ++G++  AD +L        QS   V ++ +   
Sbjct: 214 AVMCIDHPTVQDLVGRIEDR---RIVTYGENPQADVRLIDVDLKGGQSRFRVMIRDRRPG 270

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                    +           +   A       +              +    +      
Sbjct: 271 FRLEMEDLVLPMPGKHNALNATAALAVAHELGVSPEAIRRALAGFGGVKRRFTRTGEWNG 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNI 401
            + ++          +VL       EGR +AV+         S                +
Sbjct: 331 AQIFDDYGHHPVEIKAVLKAARASTEGRVVAVVQPHRYTRLASLFDDFCTCFNDADTVIV 390

Query: 402 SHVWLSGF------HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
           + V+ +G          AL   L    H      E  + L   I      GD V
Sbjct: 391 APVYAAGEAPIEGFDRDALVAGLKSRGHRNAVALERSEDLAAMISGLAGPGDYV 444


>gi|118602740|ref|YP_903955.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|166224725|sp|A1AX27|MURC_RUTMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118567679|gb|ABL02484.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 469

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 71/406 (17%), Positives = 136/406 (33%), Gaps = 36/406 (8%)

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           ++    +VV +     ++  +      +  V  A   LA   R R     IAI G+ GKT
Sbjct: 69  IKNAQVIVVSSAIKDNNLEVIKAHQLNIPVVPRA-EMLAELMRFRFG---IAIAGTHGKT 124

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++T  L+  +     I     +      +     + D+ I E   S    +     
Sbjct: 125 TTTSIITHILNVAELDPTYIIGGILNS---SGINAKLGESDYLIAEADESDASFLH---- 177

Query: 181 LVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            ++P ++VIT I   H+  +    + +  A  +    L   G   +  DD     +    
Sbjct: 178 -LQPMLSVITNIDYDHMVTYDNDYQNLKDAFIKFSANLPFYGACIMCADDEGVNEILNSI 236

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMAQNML 297
           H      + ++G +   D Q    KQ   Q + +V        + +  + IG H   N L
Sbjct: 237 HRP----LITYGFNNGTDIQAVNVKQVGMQMYFDVIYDKYTKQIPIKLNLIGKHNILNTL 292

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +GI   L    +   KAL+ F     R   +           + + Y  +P  + A  
Sbjct: 293 AAIGICCELNIKTNIIQKALANFSGVARRLDHHGKLNINNAQVSLFDDYAHHPKEISAVF 352

Query: 358 SVLSQ----------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
             L              PH   R   +  D       +    +          I+H+   
Sbjct: 353 ESLKNTYQDKRLVVIFQPHRYSRTRDLFDDFVYTLSSADILILLNIYPAQEKPIAHI--- 409

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +   L +A+ R   ++    +    +   + S + + D++++  
Sbjct: 410 --NSSTLANAIRRSSGLNPMVIKNPKEILTVLPSIVNNNDILLILG 453


>gi|315453540|ref|YP_004073810.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
 gi|315132592|emb|CBY83220.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter felis ATCC 49179]
          Length = 442

 Score = 45.6 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 48/378 (12%), Positives = 102/378 (26%), Gaps = 43/378 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY----ACIGSYNNHIGVPLTLA--- 154
             L     II ITG+ GKTTT  ++   L ++  +           +N    P  L    
Sbjct: 53  HYLNVNIPIIGITGTNGKTTTAALIAHLLQALGHSCALLGTRGFFIHNAQVKPKGLTTPS 112

Query: 155 --RMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
              +  D+     E      + +S     +     +     V T I   HL     IE  
Sbjct: 113 LLELYSDIARARAEGAKFFVMEVSSHAIAQERILGLEFAAKVHTNITSDHLDYHGDIETY 172

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            + K +               DD         ++    +       +  +          
Sbjct: 173 RAIKNQFLSDEGLKIVNL---DDPHVRFNPTNAYGYACERKTHLSVNAYSLQPEISAHVE 229

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                   +    + E+           N+   LG +  + A     +++L         
Sbjct: 230 FHADPRARRDPNSNAEMGIVHAPLMGLHNLHNLLGALLCVRALTKQPLESLCSLLGDFPG 289

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
            +     ++Q    ++D ++ A+          +   +     +   V G     G    
Sbjct: 290 VEGRMEVVHQNPLVVVDFAHTADGF--------VQIFNSFKAQKIKVVFGA----GGDRD 337

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSI------HVHYSETMDGLFL 435
                L   ++  +    +++  +       A+ + +   I       V           
Sbjct: 338 KSKRPLMGQVASTHALKSYITSDNPRSEEPLAIIEDILSGIASELRTRVVVEPDRKRAIE 397

Query: 436 FIQSSLVDGDVVVV--KS 451
              S L   +V+++  K 
Sbjct: 398 LALSELQSDEVLLILGKG 415


>gi|325475430|gb|EGC78611.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Treponema denticola
           F0402]
          Length = 482

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 69/377 (18%), Positives = 132/377 (35%), Gaps = 34/377 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 SKA I+A+TGS GK++T   L   L  +       G+       PL+       
Sbjct: 105 SVFLSLSKAPILAVTGSKGKSSTVSALYYGLKKLGYNAFLGGNITVS---PLSFFEETSC 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL  S          L++P IA+IT I P HL+ +  +E+  + K  I+E +++
Sbjct: 162 DTPVVLEL-SSWQLADLKNKKLLKPKIAIITPIMPDHLNWYGTMEKYVADKKIIYENMDE 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              +  N+DD + ++   ++ A      +   K     ++   + +  E        +  
Sbjct: 221 ADYLICNFDDGWGKIFAEETRA---NVFWYSEKKPAKKYRGVFFNKNQEGLCNLSDGERL 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADV-------------DTAIKALSVFHPKEGR 326
            +       G  + QN+L     + +                  +   +           
Sbjct: 278 LLSKDAKVPGLKLKQNVLNAGFALLLYQKIHKPENLKGNDILKDNNIKEQSEFIRKFMDE 337

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
                  L   + T   + YN   A++  A +   +         I + G     G    
Sbjct: 338 YSGIEHRLEFFYETNGIKFYNDTAATIPEASAAALEAFDKPP---ILICG-----GTNKN 389

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY---SETMDGLFLFIQSSLVD 443
              I LAE  +L     ++L       L   L +   + Y    +++D L   ++ +   
Sbjct: 390 LNFIPLAEKANLAK--SLYLLAGTGTDLLIPLLKEKSIEYNGPFDSLDSLLFSLKENAEK 447

Query: 444 GDVVVVK-SSNSCGFYR 459
           GDVV++   + S G ++
Sbjct: 448 GDVVILSPGAASFGLFK 464


>gi|262045339|ref|ZP_06018363.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259037257|gb|EEW38504.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 457

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 114/367 (31%), Gaps = 32/367 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
           +D   + + A          +S  +        +  K  ++ S  EV     K  EV   
Sbjct: 222 NDINLKQVMA-------MGCWSEQEQVGEQGHWQAKKLNADASQWEVLLDGEKVGEVKWA 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  A           +R      +     + + +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEANGVTVYDDF 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +P ++ A +  L      G  R +AVL    +  +MG         L           
Sbjct: 331 AHHPTAILATLQALRG-KVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGR------ADE 383

Query: 404 VWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
           V+L           + A       H+S  +D L   +  +   GD ++V  SN  GF  +
Sbjct: 384 VFLLQPQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV-MSNG-GFGGI 441

Query: 461 INLLLEE 467
              LL++
Sbjct: 442 HQKLLDK 448


>gi|215431088|ref|ZP_03429007.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis EAS054]
          Length = 379

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 81/299 (27%), Gaps = 27/299 (9%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           + +S            R  +   T ++  HL     + +   AKA +F+           
Sbjct: 63  MEVSSHALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAV 122

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                       + A    T+ +  +  +             Q +  +   G    +   
Sbjct: 123 VCIDDDAGRAMAARAADAITVSAADRPAHWRATDVAPTDAGGQQFTAIDPAGVGHHIGIR 182

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N L+ L I+  +    + A+  L          +  R         L    Y
Sbjct: 183 LPGRYNVANCLVALAILDTVGVSPEQAVPGLREIRVPGRLEQIDRGQGF-----LALVDY 237

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
              P ++++ ++ L+    H + R   V G     G+        +  + +      V +
Sbjct: 238 AHKPEALRSVLTTLA----HPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVV 289

Query: 407 SGFHVLA----------LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
           +  +             L  A          E            +    GDVV++  K 
Sbjct: 290 TDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 348


>gi|289524488|ref|ZP_06441342.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502272|gb|EFD23436.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 201

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 45/174 (25%), Gaps = 23/174 (13%)

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +   N L    +   L  D +   K L    P  GR +RY              + +A 
Sbjct: 5   EYNVLNALAASSVAWSLDFDAEVIRKGLENCPPVPGRLERYFVEDGPVCIIDYAHTPDA- 63

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
                    VLS + P   GR   V G     G      +  +   ++      + ++  
Sbjct: 64  ------LEKVLSTVKPLCNGRLWLVFGH----GGERFKENRPILGSIAARFADRIVVTMD 113

Query: 408 ---GFHVLALKDALPRSIH-------VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                    +   +   I                    F       GDVV+V  
Sbjct: 114 NPRSEDPRDIATQIADGIKSSPGSSEYWTIIDRKEAVHFALDRAGKGDVVLVTG 167


>gi|148241126|ref|YP_001226283.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
 gi|189082508|sp|A5GPX1|MURC_SYNR3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147849436|emb|CAK26930.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus sp. RCC307]
          Length = 479

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 127/418 (30%), Gaps = 55/418 (13%)

Query: 59  HAVQKG---AGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIA 112
            A+  G   A LVVV++ +  +   L         V      L  L  A         IA
Sbjct: 68  DAICSGVDRAPLVVVSSAIPETNPELEAARGAGLRVVHRSELLAWLINAQHS------IA 121

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSH 171
           + GS GKTTT  ++   L S       I        VP   +       ++ + E   S 
Sbjct: 122 VAGSHGKTTTSSLIASLLHSAGLDPTAIIGGV----VPAFGSNARNGAGEWLVAEADES- 176

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                       P + +IT +   H  ++  ++ + +                 N D   
Sbjct: 177 ----DGSLVRFHPQLGLITNLELDHTDHYPNLDALVATMRRFSGNCSSV---LANRDCPV 229

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGY 290
                     L     +S  ++ +A F+             +    G+   E+     G 
Sbjct: 230 LSA------ELSADHWWSLQENSSAHFRAVPLSLDGAGCRADYLEDGRRLGELALPMAGI 283

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  +    +  A       AL+   P   R              LI + Y  +P
Sbjct: 284 HNLSNALAAVAACRLAGASFADLQAALTELVPPGRRFDLRGEWQG----RLIVDDYAHHP 339

Query: 351 ASMKAAISVLSQIS-------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYN 400
           + + A +++   +        P    R +AV          +  F    AE         
Sbjct: 340 SEVDATLTMAQLMVSSGKSTLPWVPKRVVAVFQPHRY--SRTAQFMERFAEALGCADEVL 397

Query: 401 ISHVWLSGFHVLA------LKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           ++ ++ +G   +       L + + ++ H       MD L   +Q     GD+V+V  
Sbjct: 398 VAPLYSAGESAIEGVSSATLAEKVQQAGHSARALADMDSLVDAVQQCSSAGDLVLVMG 455


>gi|95929402|ref|ZP_01312145.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Desulfuromonas acetoxidans DSM 684]
 gi|95134518|gb|EAT16174.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Desulfuromonas acetoxidans DSM 684]
          Length = 343

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 4  LWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFILHAV 61
          + T  +L   I G  IG      +  ++ ID     P +  F A          ++    
Sbjct: 1  MATLKELAALIDGDIIGDD-SVEITRLAPID--GAGPGDITFIANP-------KYLPFVS 50

Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          +  A  ++V+  +        I      +   A  K+
Sbjct: 51 KTAASAILVDRPLDRE----DIAYLVCKNPYLAFAKV 83


>gi|330720684|gb|EGG98925.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC2047]
          Length = 482

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 126/403 (31%), Gaps = 43/403 (10%)

Query: 65  AGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           A +VV ++ +      +       +  V      L +L    R       IA+ G+ GKT
Sbjct: 78  ADVVVTSSAINEENPEIIFARANRIPLVPRA-EMLGELMR-YRHS-----IAVAGTHGKT 130

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +L   L+        +     +                 + E   S    +     
Sbjct: 131 TTTSLLASLLAEGGLDPTFVIGGLLNS---AGTNAKLGASRILVAEADESDASFLH---- 183

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            ++P  A++T I   H+S + G     +     F        + +   D           
Sbjct: 184 -LQPMTAIVTNIDADHMSTYGGDFSKLTDTFISFLHNLPFYGLVVACIDDDN---VKAVL 239

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHMAQNMLM 298
               + + ++G ++ AD++    KQ   +     +        +V  +  G+H   N + 
Sbjct: 240 PDVSRPVITYGVAEEADYRAVDIKQTGLRMTFTAKRPNDHQDLQVTLNIPGHHNVLNAMA 299

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + +      +    AL  F     R +            L+ + Y  +P  +KA + 
Sbjct: 300 AIAVATDEGVSDEAICAALQKFEGVGRRFQICGEFETVNGSVLMVDDYGHHPREVKATLD 359

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
            +    P        V+         ++    D   VLS   +  + L            
Sbjct: 360 TVRSSWPDR----RLVMLYQPHRYSRTRDLFEDFISVLSE--VDSLLLMEVYPADEEPIP 413

Query: 408 GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
           G    +L  ++ +   V   + +  + +   +   L DGD+++
Sbjct: 414 GADGRSLCRSIRQRGQVDPVFIDHGEDVIDVLARELKDGDILL 456


>gi|315293602|gb|EFU52954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 153-1]
          Length = 445

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEFSARLGESDFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|270265035|ref|ZP_06193298.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
 gi|270040969|gb|EFA14070.1| hypothetical protein SOD_k00710 [Serratia odorifera 4Rx13]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 112/365 (30%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYQPGFVIGGVPGNFDVSARLG-GSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIILPD 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D+  + + A          +S  +    +   R  K   + S  EV L G+    V   
Sbjct: 222 NDNHLKQVMA-------MGCWSEQELVGEEGAWRAHKLTPDASHYEVFLDGEKAGEVKWA 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +      +  +     +           A+          +R      +     + + + 
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVQPADACAV---LGDFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A ++ L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGISKNDLAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L   H       + A       H+S  +  L   I  +   GD ++V  SN  GF  + 
Sbjct: 385 FLFQPHHIPWQVAEVAEACVQPAHWSADLGTLVDMIVRTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
           + LLE
Sbjct: 443 DRLLE 447


>gi|213021635|ref|ZP_03336082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 222

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 13/122 (10%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R++ AL       I++S   N  S +AA++ L     H +G    +LG   +  + S  
Sbjct: 97  HRFQLALEHNGVRWINDSKATNVGSTEAALNGL-----HVDGTLHLLLGGDGKSADFSP- 150

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               LA  L+   I  ++  G     L  AL   I    +ETM+     +   +  GD+V
Sbjct: 151 ----LARYLTGDRI-RLYCFGRDGAQLA-ALRPEI-AQQTETMEEAMRLLAPHVQPGDMV 203

Query: 448 VV 449
           ++
Sbjct: 204 LL 205


>gi|110634359|ref|YP_674567.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           sp. BNC1]
 gi|118595664|sp|Q11GS3|MURD_MESSB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|110285343|gb|ABG63402.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chelativorans sp.
           BNC1]
          Length = 467

 Score = 45.6 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 109/362 (30%), Gaps = 38/362 (10%)

Query: 83  IPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIK 134
            P + V+    A    +  + +  R R    + A ++AITG+ GK+TT  +    L +  
Sbjct: 81  HPHWSVELARSAGVEIIGDIELFVRERRMHAAHAPLVAITGTNGKSTTTALTAHVLKAAG 140

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           +          +IG  +     PV     + E     +     L+  + P   V+  I P
Sbjct: 141 RDTQMG----GNIGRAVMTLDPPVADRHYVLECSSYQID----LSPTLNPTAGVLLNITP 192

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
            HL     +E  A+ K  +  G +         DD +   +  +    G K         
Sbjct: 193 DHLDRHGTMENYAAIKERLVAGSDTAIIGV---DDEYCRAVADRLEKAGRKVSRISLTGT 249

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
             D       Q         Q + + +  +          N    L   +   A   +  
Sbjct: 250 LEDGFFADGTQLFRAG----QGKAEPLFSLEGIGSLRGRHNAQNALAAAAACLACGLSPA 305

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           +  + F    G   R       G    +++S   N  +   A+S   +I     G   A 
Sbjct: 306 EIQTGFRSFPGLAHRMEQVGKLGHVLFVNDSKATNADASAPALSSFPRIYWIAGGLPKA- 364

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
            G +  + +                 I+  +L G    A    +  + +   S T+    
Sbjct: 365 -GGIASLRQYFPR-------------IAKAYLIGEAAPAFAATIGEATNYEISGTIAAAV 410

Query: 435 LF 436
             
Sbjct: 411 QH 412


>gi|187918447|ref|YP_001884010.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia hermsii
           DAH]
 gi|119861295|gb|AAX17090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia hermsii
           DAH]
          Length = 451

 Score = 45.6 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 108/366 (29%), Gaps = 43/366 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L +        G+       PL+           + EL 
Sbjct: 112 PIIAITGTKGKSTLASLLHKVLVAKYPNSKLGGNIGIS---PLSFLDELDGTSPIVLELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        + P I++IT I   H + +S  +   + K++IF              
Sbjct: 169 S----WQLHDLENLCPIISIITNIYCDHQNYYSNFDSYIADKSKIFINQNSG-------- 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                +L ++  A          KSK   F            +     +      V   +
Sbjct: 217 -----ILISQDQAYYNYFYKFKSKSKLILFSETVPLNFKNDIFYFEMGKVYLNNKVMGTL 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  ++  +  V I +           +    +G   R             +++ + 
Sbjct: 272 SDSRIVLLISKMITVFIASYLRLDLSVVSKILTDFDGIEHRLEFVREFEGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   ++  L        G    + G     G           E+LS+   + + L G
Sbjct: 332 IPDSTVLSVKSLRPY----GGLINLITG-----GTDKGLDFAVFGEILSMVK-TWILLRG 381

Query: 409 FHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVK-SS-----------NSC 455
              L +   L  +  H     +++    + + + +  D+V+   +S              
Sbjct: 382 SATLKIIKFLEDNNLHYFIFSSLEECVYYAKKNSIRDDIVLFSPASASFELFKNEFDRGL 441

Query: 456 GFYRLI 461
            F  L+
Sbjct: 442 QFKNLV 447


>gi|255321741|ref|ZP_05362896.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
 gi|255301221|gb|EET80483.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Campylobacter showae RM3277]
          Length = 430

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 49/385 (12%), Positives = 107/385 (27%), Gaps = 59/385 (15%)

Query: 98  LAVAARLR---SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI-------------- 140
           LA   RL        II ITG+ GKTTT  ++   L ++                     
Sbjct: 46  LAECKRLLGIDENIKIIGITGTNGKTTTAALICATLLNLGYGCGLCGTRGAFINGERIDD 105

Query: 141 ---GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               +      +    A      ++ + E   S     +     +   + + T +   HL
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVME--ASSHAIAQKRIESLDFAMKIFTNLTQDHL 163

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 EE A  K+E F           +                      ++    NAD
Sbjct: 164 DYHGTFEEYARVKSEFFADDAPKLINIDDRG----------GIKFNPANALTYALHANAD 213

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F   ++             +G+     +    +++   +     + ++    ++    A 
Sbjct: 214 FAPGEYSLEGGIHCALKTPRGQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIALAA 273

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           S F   EGR       +++    ++D ++  +             ++     + +AV G 
Sbjct: 274 SKFDGVEGRM----EVVSREPLVIVDFAHTPDGIE--------KVLNALRHRKIVAVFGA 321

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSE 428
               G             ++      + ++  +            +   L  +  V    
Sbjct: 322 ----GGDRDRTKRPKMGAIAQKYAHRLVVTSDNPRSEEPETIIAEICGGLEMNERVKCIA 377

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   SL   +++V+  K 
Sbjct: 378 NRKEAIKYALESLAQDEILVILGKG 402


>gi|118444708|ref|YP_877107.1| UDP-N-acetylmuramate--L-alanine ligase [Clostridium novyi NT]
 gi|166222976|sp|A0PXK5|MURC_CLONN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118135164|gb|ABK62208.1| UDP-N-acetylmuramate--alanine ligase [Clostridium novyi NT]
          Length = 458

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 113/342 (33%), Gaps = 21/342 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  M +    S       +   N  +           + ++ + E    
Sbjct: 114 IAISGTHGKTTTTSMFSHISLSANLDPTILVGGNLDVINGNVRVG---NSEYFVTEACEY 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++F      P+I VI  I   HL  +  I +I +   +  + +   G + +N DD 
Sbjct: 171 KASFLKFY-----PYIGVILNIEADHLDFYKDINDIQNTFLKFAKLIPNDGFLIVNADDK 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +        + +FG +                ++   + + K   +  +  G 
Sbjct: 226 RCVEVSKQV----DCNVITFGINNGDVRAKNIVFNNGRPTFDVYRNEEKLFTLTLNVPGN 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES----- 345
           H   + L ++     L   VD+ I+ LS F+    R +                      
Sbjct: 282 HNILDALASISSALSLNVPVDSIIEGLSTFNGAHRRFEIKGKVDGITVVDDYAHHPTEIK 341

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N A       V     PH   R I++  D       + +  +      +    + V 
Sbjct: 342 AALNAAKNFPHKRVFCVFQPHTYSRTISLFDDFANSFSNADTLVLADI-YAAREKDTGVV 400

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            S      +++     ++     + + +  F++  L DGD++
Sbjct: 401 SSTMLGDKIRE---NGVNCKNLHSFEDIVTFLKGELKDGDLL 439


>gi|83815787|ref|YP_445056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
 gi|83757181|gb|ABC45294.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salinibacter ruber DSM 13855]
          Length = 491

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  A++T++   H   F   ++   A  E    L + G + L  D      L   + 
Sbjct: 202 HYRPQSAIVTSLEFDHADIFVDRDDYRGAFEEFVGRLPRDGQLALCGDAPAVRALADHTR 261

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + ++G + + D +              +++     EV     G H  QN L   
Sbjct: 262 AP----VRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAA 317

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +         T    L+ F       KR +    +    L+ + +  +P ++ A +  L
Sbjct: 318 LLARREGVSPSTIAAGLASFGG----MKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEAL 373

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA--- 417
              + H + R +A+          S+    + A   +      V+L    V    DA   
Sbjct: 374 R--AAHPDRRLVAIF---EPRSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDADAM 428

Query: 418 ----------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINL 463
                       R +     E +D +   +  +L  GDV ++  SN   F     RL + 
Sbjct: 429 LDPTAVAHTIRDRGVPAEVFEDVDAVLPTLTDTLQPGDVALL-MSNG-RFGGLPERLPDA 486

Query: 464 L 464
           L
Sbjct: 487 L 487


>gi|170681037|ref|YP_001746635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
 gi|170518755|gb|ACB16933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli SMS-3-5]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 117/378 (30%), Gaps = 40/378 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M T  L         +       GVP          + DF + E 
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEQCGYKPGFVIG-----GVPGNFEVSACLGESDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I  
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIW 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
             +D   +              +S  +        +  K  ++ S  EV     K  EV 
Sbjct: 220 PENDINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVK 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +      A  A           +R      +     + +
Sbjct: 273 WSLVGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNI 401
            +  +P ++   ++ L+ +     G    +   + E    +        DLA  L     
Sbjct: 329 DFAHHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA-- 381

Query: 402 SHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V+L           + A       H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 382 DEVFLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFG 439

Query: 459 ----RLINLLLEEFPAIQ 472
               +L++ L ++  A Q
Sbjct: 440 GIHQKLLDGLAKKAEAAQ 457


>gi|260462091|ref|ZP_05810335.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
 gi|259031951|gb|EEW33218.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium opportunistum
           WSM2075]
          Length = 468

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 73/412 (17%), Positives = 129/412 (31%), Gaps = 34/412 (8%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GH     A   G A +VVV+T +  S   L      +  ++     LA   R R     +
Sbjct: 58  GHK----AENLGEAEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFRQA---V 110

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+   L +       I     +            D ++ + E   S 
Sbjct: 111 AIGGTHGKTTTTSMVATLLEAGGLDPTVINGGIIN---AYGTNARMGDGEWMVVEADES- 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   IAV+T I P HL ++   +++  A  +  E +   G   +  D   
Sbjct: 167 ----DGTFLKLPAEIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYGFGVMCTDHPE 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVV 284
            + L ++        + ++G++  AD +    +     S  +V ++ +         ++ 
Sbjct: 223 VQALVSRIEDR---RVITYGENAQADVRFTNHRMAGAISEFDVVIRNRKTGGQTAISDLR 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + +   L    +   K LS F   + R            F     
Sbjct: 280 LPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSWNGVDVFDDYGH 339

Query: 345 -----SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                +     A       V++   PH   R   +  +       + +  +         
Sbjct: 340 HPVEIAAVLKAARSATKGRVIAIAQPHRFTRLHDLFNEFSACFNDADTVMVAPVYAAGEE 399

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            I  V  S   V  ++          Y E    +   I+     GD VV   
Sbjct: 400 PIDGV-TSDELVSRIRAG--GHRDARYIEGPAAIAPVIRDLAKPGDFVVFLG 448


>gi|308233779|ref|ZP_07664516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Atopobium vaginae
           DSM 15829]
 gi|328943772|ref|ZP_08241237.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
 gi|327491741|gb|EGF23515.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Atopobium
           vaginae DSM 15829]
          Length = 493

 Score = 45.2 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 122/415 (29%), Gaps = 59/415 (14%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
                  + +   A R R +   +AITG+ GKTTT  ++   + +  K    +G+     
Sbjct: 94  CKHCREVIGEPEFAWRCRPQ-KWVAITGTNGKTTTTTLIEHMIRADHKQACAVGNIGRAC 152

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
              L      +   + + EL    L E + L     PH A++  I P H+     ++  A
Sbjct: 153 ---LGEVDHHLADTWFVAELSSFQLAETKLLH----PHAAILLNITPDHIEWHGSMQAYA 205

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
           +AK  IF  L       ++ DD + + + ++    G+  +       + D +  +   CS
Sbjct: 206 AAKERIFANLTTDDLAIISRDDLYCKAIYSRLVERGLSPVC---VDTSQDPKTLQAAYCS 262

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +           +  +           N+   L   ++      +      V        
Sbjct: 263 DSMLYVRLNGTTTPLIKASEAALKGMHNIQNMLAASALALFIGVSVDAIRQVLQTFTTLE 322

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R          + +++S   N  S++ A++          G  I +LG   +  +LS  
Sbjct: 323 HRLEYVATIHGVSFVNDSKATNTDSVEKALTAFPC------GSTIVLLGGHDKQTDLSSL 376

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALK--------------DALPRSIH---------- 423
            H  +               G     +               +                 
Sbjct: 377 VHQVV------RKCRGAICFGEAGQRIYHELVSVQNAQASDGEGACDKCKSAVASAPLSF 430

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLE 466
           V     +   F    +       V++    SS             F  L++ L  
Sbjct: 431 VKCVPHLRDAFDCAVTHAKPHTTVLLSPACSSFDEFHNMEERGTYFKNLVHELRA 485


>gi|262370229|ref|ZP_06063555.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter johnsonii SH046]
 gi|262314571|gb|EEY95612.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter johnsonii SH046]
          Length = 355

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 18/107 (16%)

Query: 1   MNP-LWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDS---RSIAPQEAFFAIKGPHYDGHD 55
           MNP  +   DL + +QG  +G      + G+ S+DS   R +A    F        +G  
Sbjct: 1   MNPHQYRLEDLARLVQGECVGQA-DLILKGLASLDSAESRHLA----FV-------NGEK 48

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           ++  A Q  AG  +V  D+   +         V +   A   L  A 
Sbjct: 49  YLEQAQQSKAGAFIVTADLKDHLVEHQ-NFIVVANPYLAFAILTHAF 94


>gi|331013841|gb|EGH93897.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 92

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 5/73 (6%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID++YNANPAS+ AA+ +L+  S    GR + VLGD+ E+GE ++  H D+    +  
Sbjct: 15  RVIDDTYNANPASINAAVDILTGFS----GRTVLVLGDIGELGEWAEQGHRDVGAYAA-G 69

Query: 400 NISHVWLSGFHVL 412
            +S ++  G  + 
Sbjct: 70  KVSALYAVGPLLK 82


>gi|167750036|ref|ZP_02422163.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
 gi|167657057|gb|EDS01187.1| hypothetical protein EUBSIR_01004 [Eubacterium siraeum DSM 15702]
          Length = 438

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 103/343 (30%), Gaps = 40/343 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   II ITG+ GK+TT  ++   +    K    IG+       PL          
Sbjct: 101 FLRFCDNMIIGITGTKGKSTTSSLIKFFIEKSGKDTMLIGNIGVP---PLERREEFTKDC 157

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L           P +AV+  I P HL +++      +AK  IF    +  
Sbjct: 158 VIVCEMSCHQL-----EYVKASPDVAVLLNIYPEHLDHYTDFAAYRNAKLNIFRYQNEND 212

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           T+ +  +   +   KA+    G                                    + 
Sbjct: 213 TLIIGEEVKQYADTKARVITAG---------------FSCGDIGTRNGGIFIGDEFYPAD 257

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H   N+ + +   +     V     AL  F   E R               
Sbjct: 258 MIDTKLKGEHNLYNIAIAIYAATKAGCTVKQCFDALPQFCGLEHRL---EYVCTLNGAEY 314

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS-LYN 400
           I++S +  P +  AA+                ++G M          + +L++ LS    
Sbjct: 315 INDSISTAPQTAIAALKAY-------PDTDTLIIGGM-----DRGIPYDELSDWLSGDTL 362

Query: 401 ISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
           + ++ +       + + +    + + Y++ M+    + +    
Sbjct: 363 VRNLIILPDSGKRVAEKVTNPLVKLIYADDMEQAVKYAKQVTK 405


>gi|322378367|ref|ZP_08052823.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
           suis HS1]
 gi|321149224|gb|EFX43668.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Helicobacter
           suis HS1]
          Length = 423

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 111/344 (32%), Gaps = 52/344 (15%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF----G 163
            TII I+G+ GKTTT  ML + L S             +IG+PL      +  +      
Sbjct: 98  PTIIFISGTNGKTTTARMLGLLLKSSN------AQVGGNIGIPLIDLYTQIKAEQRKPPY 151

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           ++ L  S        T+ + P I ++  ++  HLS     E    AK +    +++ G +
Sbjct: 152 VWILETSSF--TLHYTNHLVPQIYILLPLSQDHLSWHENHENYVEAKLKPLSFMQQEGHV 209

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           FL+        +KA  +   +                            +   +   +++
Sbjct: 210 FLHASLKDHPTVKALINPPNLIFY----------------------QDSKHLAKQMGLQI 247

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                      + L+ L +  + +   D  +    +  P      R    L+Q   T +D
Sbjct: 248 SKVRFEEPFLLDALLALSVAKLYSGVADYDLLNTYMIQP-----HRIEIFLDQDQNTWVD 302

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  +       L  +          +LG     G+        L EVL+   +  
Sbjct: 303 DSKATNIDA------TLKALDRFKGCYIHLILG-----GDTKGMDLKPLFEVLAHMQV-E 350

Query: 404 VWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
           ++  G     +        I  H    +      I+ +L  G +
Sbjct: 351 IYAIGVSAPMVMQMAQDYHIRAHLCHDLRIAVEHIKQNLRPGQI 394


>gi|257061316|ref|YP_003139204.1| UDP-N-acetylmuramate--L-alanine ligase [Cyanothece sp. PCC 8802]
 gi|256591482|gb|ACV02369.1| UDP-N-acetylmuramate/alanine ligase [Cyanothece sp. PCC 8802]
          Length = 494

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 121/418 (28%), Gaps = 50/418 (11%)

Query: 68  VVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +  +            P+F   DVL AL          S    IA+ G+ GKTT
Sbjct: 105 VICSTAIAKNNSEYQAAQEKGCPIFHRSDVLAALI---------SDYQSIAVAGTHGKTT 155

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I                     + + E   S           
Sbjct: 156 TSSLVGYVLLKAGLDPTIIVGGEVD---AWEGNAHLGSSKYLVAEADES-----DGSLVK 207

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I V+T I   H  ++  +E++           E                       
Sbjct: 208 HSPTIGVVTNIELDHPDHYESLEQVVRTFQIFETQCEILVGCIDCETV---------RSQ 258

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L     YS   +KNAD+ ++     ++ +     +      ++     G H   N L  +
Sbjct: 259 LNPTITYSLDPAKNADYTVKNLTYDAQGTIAEVWERGRFLGQMRLTIPGEHNVSNALAAV 318

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  D      AL+ F   + R +               + Y  +P+ ++A +S  
Sbjct: 319 AVGRKLGLDFQVIADALATFGGAKRRFEH----RGYSNGITFIDDYAHHPSEIQATLSAA 374

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI--SHVWLSGF------HVL 412
                     R+  +         +           +   +  S ++ +G          
Sbjct: 375 RSKVDQNGSSRVVAIFQPHRYSRTATFLADFAQAFQAADLVILSDIYSAGEVNIHNITGQ 434

Query: 413 ALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEF 468
            L +A+      V Y   +  L   +   L  GD+ +       G   ++I  ++  +
Sbjct: 435 DLANAVKVHHSQVIYEPCLKALTESLPQLLQPGDLALF---LGAGNLNQIIPQVIARY 489


>gi|168187029|ref|ZP_02621664.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
 gi|169295057|gb|EDS77190.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum C str.
           Eklund]
          Length = 458

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 60/391 (15%), Positives = 133/391 (34%), Gaps = 37/391 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  N   +     L+IP     D    L  +    +       +AI+G+ GKTTT  M
Sbjct: 77  AAIPSNNPELVKARELNIP---TMDRAEFLGHVMQGHKYN-----VAISGTHGKTTTTSM 128

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           L+    S       +   N  +           + ++ + E        ++F      P+
Sbjct: 129 LSHITLSANLDPTILVGGNLDVINGNVRVG---NSEYFVTEACEYKASFLKFY-----PY 180

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + +I  I   HL  +  I +I +   +  + +   G + +N DD     +  +       
Sbjct: 181 VGIILNIEADHLDFYKDINDIQNTFLKFAKLIPSDGFLIVNADDERCIAVSKEV----DC 236

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG                  ++   + + K   +  +  G H   + L ++     
Sbjct: 237 NVITFGIDNGEVRAKNIVFTNGHPTFDVCKNEEKLFTLTLNVPGTHNILDALASISSALS 296

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV------ 359
           L   V++ I+ LS F+    R +       +     + + Y  +P  +KAA++       
Sbjct: 297 LNVPVNSIIEGLSTFNGAHRRFE----IKGKVDGITVVDDYAHHPTEIKAALNAAKNFPH 352

Query: 360 ---LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
                   PH   R I++  D       + +  +      +    + +  S      +++
Sbjct: 353 KRIFCVFQPHTYSRTISLFDDFSNSFSNADTLVLADI-YAAREKDTGIVSSDMLGDKIRE 411

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                ++     + D +  F++  L +GD++
Sbjct: 412 ---NGVNCKNLHSFDDIVTFLKDELQEGDLL 439


>gi|330826365|ref|YP_004389668.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans K601]
 gi|329311737|gb|AEB86152.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans K601]
          Length = 480

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 21/363 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDF--GIFE 166
           ++A+ G+ GKTTT  ML   L          +G    + G+   L  +         + E
Sbjct: 130 VLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGISARLGALAAGQARPLFVIE 189

Query: 167 LGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                             RP  AV+  +   H   F  + +I      +   +  +G + 
Sbjct: 190 ADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLGQIERQFHHLVRTVPPSGRVV 249

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  +     +       G+ +  +      A  +   ++       +       +    
Sbjct: 250 VNGLEESLARVLHAGCWSGVASFGAAVSDFCARGEPHDFEVLQRGQAVARVQWALTGVHN 309

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                              +     +            +                T +  
Sbjct: 310 -QLNALAAIAAAEHVGVAPAQAAQALARFENVRRRMELRGTARGISVYDDFAHHPTALRT 368

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +     +     +L+   P     +   LG M             L   L   +++  
Sbjct: 369 TLDGLRRRVGGEARILAVFEPRSNTMK---LGTMK----------SQLPWALEQADLAFC 415

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +G    A +   P       +  +  L   + ++   GD ++   SN   F  +   L
Sbjct: 416 HTAGLDWDAAEALAPMGARARTAADIPTLVAQVSTAAQPGDHIL-CMSNGS-FGGVHAKL 473

Query: 465 LEE 467
           LEE
Sbjct: 474 LEE 476


>gi|315122420|ref|YP_004062909.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495822|gb|ADR52421.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 475

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 70/407 (17%), Positives = 129/407 (31%), Gaps = 45/407 (11%)

Query: 65  AGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A ++VV+T +             +IP+         +  LA   R R     I+++G+ G
Sbjct: 67  AEILVVSTAIDKDNVECVAARERNIPIIY----RSEM--LAGLMRAR---KSISVSGTHG 117

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L         I     +              ++ + E   S        
Sbjct: 118 KTTTTSLIAALLEQGNLDPTVINGGIVNS---YGTNARIGTGEWIVVEADES-----DGT 169

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              +   I V+T I P HL  +S  + I +A  +  + +   G   +  D      L A+
Sbjct: 170 FIKLPSDIVVVTNIDPEHLDYYSDFDAIRAAFYKFIDNVPFYGFAVVCLDHPEILSLVAR 229

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-------VQLQGKSMEVVHHGIGYH 291
                I    ++G+   AD      ++ S +S  +            +  ++V   IG +
Sbjct: 230 IQNRKII---TYGQHPQADVCYSNIRKYSGRSIFDVTLQGSLTPTPIEIKDLVLPLIGNY 286

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESY 346
              N    + I   L    +   K L+ F   + R             +      ++ S 
Sbjct: 287 NISNASAAIAIAHRLGLSSEDIAKGLAGFSGIKRRFTLIGIWNDVHIFDDYGHHPVEISA 346

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         V++   PH   R   +     +    S +  I               +
Sbjct: 347 VLSAVRQICPGKVIAIHQPHRYTRLSTLFDQFSKCFVDSDTVLISPVYAAGEK-----VI 401

Query: 407 SGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           SGF    L   +  S H   +Y ++ D L   I   +  GD ++   
Sbjct: 402 SGFSSQELVQKIKESGHPEAYYLDSFDHLVSKILDIVEPGDFIIFFG 448


>gi|260913057|ref|ZP_05919539.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
 gi|260632644|gb|EEX50813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Pasteurella dagmatis ATCC 43325]
          Length = 456

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 95/314 (30%), Gaps = 21/314 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D D+ + E                   P   +I  I   H   F  ++ I      +   
Sbjct: 154 DSDYFVIEADEYDTAFFDKRSKFVHYNPKTLIINNIGFDHADIFDDLKAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    D++  +           + + S  +      +                 
Sbjct: 214 IPANGRILSVADEANVKATLEMGCWSEKQFLGSDKEWHAERLRNDSTVFAV------FHN 267

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  EV  + +G H   N LM +     +   +  A +ALS F   + R          
Sbjct: 268 GEKVAEVHWNVVGQHNMHNALMAIAAAHHVGVSIQDACEALSTFVSPKRRL---EVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +      +   ++ +     G G RI  + +             ++A  L
Sbjct: 325 NGVTVYDDFAHH---PAEILATLTALRDKVGGGARILAVLEPRSNTMKMGIHKDEIAPAL 381

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                 HV++     +   + D +   +    ++  +D L   I S     D ++V  SN
Sbjct: 382 GRA--DHVFIFQPENIGWDVVDIVSDCVQPAVWNMNLDKLVDLIVSEAKPKDHILV-MSN 438

Query: 454 SCGFYRLINLLLEE 467
              F  +   LL++
Sbjct: 439 GS-FGGIHQKLLDK 451


>gi|331696621|ref|YP_004332860.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951310|gb|AEA25007.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudonocardia
           dioxanivorans CB1190]
          Length = 476

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 74/398 (18%), Positives = 132/398 (33%), Gaps = 41/398 (10%)

Query: 68  VVVNTDMVASIGSLSIP----VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           VVV+T +  +   L+      +  V     AL  L    R      + A+ G+ GKT+T 
Sbjct: 73  VVVSTAIRETNPELAAARERGLLVVHRA-DALADLTTGRR------VAAVAGTHGKTSTS 125

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            MLT+AL   +   +     +                D  + E   S      +      
Sbjct: 126 SMLTVALQHCRLDPSFAIGGDLAA---SGAGAHHGGGDVFVVEADESDGSFTAYA----- 177

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +AV+T + P HL +    E   +        + + GT+ +  DD+    L  ++ A G
Sbjct: 178 PEVAVVTNVEPDHLDHHGTEEAYRAVFEAFVGRIAEKGTLVVCADDAGAAALGEQAEARG 237

Query: 244 -IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                Y    +   D  L         + M  + +   + V     G HMA N L  L  
Sbjct: 238 LTVRRYGRTATGPDDAVLLDHVPDGPGARMRARHRDAELAVRLAVPGEHMALNALAALLA 297

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L A VD  +  L+ F     R +       +     + + Y  +P  + A +     
Sbjct: 298 GVELGAPVDGLLAGLAEFDGVRRRFEF----KGRAAGVAVYDDYAHHPTEVAATLRAARS 353

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           ++         V+     +   ++ F  +    L+L     V +            G   
Sbjct: 354 VAGPTGR---VVVAFQPHLYSRTRLFATEFGRALALA--DEVVVLDVYGAREDPEPGVTG 408

Query: 412 LALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             + DA+      VH+  +   +   +      GD+V+
Sbjct: 409 ALVADAVTLPPQVVHHVPSWSQVPAVLARLARPGDLVL 446


>gi|317124649|ref|YP_004098761.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
 gi|315588737|gb|ADU48034.1| UDP-N-acetylmuramate--L-alanine ligase [Intrasporangium calvum DSM
           43043]
          Length = 488

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 116/351 (33%), Gaps = 29/351 (8%)

Query: 111 IAITGSVGKTTTKEMLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +A+ G+ GKTTT  +LT             +G      G            D  + E   
Sbjct: 131 VAVAGANGKTTTTSLLTVALQGCGLDPSFAVGGELARHGT----NAHRGADDIFVVEADE 186

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S          + RP +A++T + P HL  +     + +A   +   ++  G +    DD
Sbjct: 187 S-----DGSFIVYRPEVAIVTNVQPDHLDFYGSFAVVQAAYEALVATIQPGGLLVTCADD 241

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +    L  ++ A G   + ++G   +AD  L  ++Q    S   V  +G    +     G
Sbjct: 242 AGSRALAERATARGT-RVLTYGFRPDADVALGDYRQDGLTSGATVLDEGVRRLLTLGIPG 300

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N +                + A         R    +    +    ++ + Y  N
Sbjct: 301 RHNALNAVAAYTAAVHGLGQQPDRVLAGLASFTGTRRRFEPK---GEAAGVVVVDDYAHN 357

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW---- 405
              + A +   SQ+          ++     +   ++ F ++L   L+  ++  V     
Sbjct: 358 AGKVAAVVETASQLVVRPGR---LIVVFQPHLYSRTRDFAVELGRGLAPADVVIVMDVYA 414

Query: 406 --------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                   +SG  V        R   VHY  +   +   +      GD+V+
Sbjct: 415 AREDPVPGVSGELVADAVRRTGRGSDVHYVPSWSEVPSVVAQVARAGDLVL 465


>gi|300950241|ref|ZP_07164180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
 gi|300957152|ref|ZP_07169391.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300316096|gb|EFJ65880.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 175-1]
 gi|300450431|gb|EFK14051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 116-1]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESNFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGIAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|152973099|ref|YP_001338245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957948|gb|ABR79978.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 150 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A       + +   G  +       K        W  +    K  EV    
Sbjct: 210 NDINLKQVMAMGCWSEQELVGEQGHWQA------KKLNADASQWEVLLDGEKVGEVKWAL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A +  L      G  R +AVL    +  +MG         L           V
Sbjct: 320 HHPTAILATLQALRG-KVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGR------ADEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 373 FLLQPQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV-MSNG-GFGGIH 430

Query: 462 NLLLEE 467
             LL++
Sbjct: 431 QKLLDK 436


>gi|83748764|ref|ZP_00945779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|207744403|ref|YP_002260795.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724585|gb|EAP71748.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ralstonia
           solanacearum UW551]
 gi|206595808|emb|CAQ62735.1| udp-n-acetylmuramoylalanine--d-glutamate ligase
           (udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetase)
           (d-glutamic acid-adding enzyme) protein [Ralstonia
           solanacearum IPO1609]
          Length = 550

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           GE        LA  ++ Y    V L G     ++ AL    + +  + T++       + 
Sbjct: 448 GEGKGQDFSPLATPVAQYA-RAVVLIGRDAPQIRAALADSGVELVEAPTLEAAVQEAVAR 506

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 507 AQPGDAVLL 515


>gi|110808025|ref|YP_691545.1| putative ligase [Shigella flexneri 5 str. 8401]
 gi|110617573|gb|ABF06240.1| putative ligase [Shigella flexneri 5 str. 8401]
          Length = 440

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 88  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 145

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 146 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 206 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 258

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 259 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 315 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 367

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 368 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 425

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 426 QKLLDGLAKKAEAAQ 440


>gi|293407957|ref|ZP_06651797.1| ligase [Escherichia coli B354]
 gi|301024464|ref|ZP_07188143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|291472208|gb|EFF14690.1| ligase [Escherichia coli B354]
 gi|300396577|gb|EFJ80115.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 69-1]
 gi|332748971|gb|EGJ79394.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-671]
 gi|332749250|gb|EGJ79671.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 4343-70]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|297521770|ref|ZP_06940156.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Escherichia coli OP50]
          Length = 127

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 44/126 (34%), Positives = 66/126 (52%)

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
            KEM    LS    T    G+ NN IGVP+TL R+  + D+ + ELG +H GEI +   L
Sbjct: 1   VKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSL 60

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
            RP  A++  +A AHL  F  +  +A AK EIF GL + G   +N D++ +   ++   +
Sbjct: 61  TRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGS 120

Query: 242 LGIKTI 247
             +   
Sbjct: 121 RKVWRF 126


>gi|300818544|ref|ZP_07098753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300916600|ref|ZP_07133322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300922863|ref|ZP_07138946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300928056|ref|ZP_07143606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300987091|ref|ZP_07177998.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300988332|ref|ZP_07178628.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|301048563|ref|ZP_07195580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|301329268|ref|ZP_07222245.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301646689|ref|ZP_07246552.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|309792871|ref|ZP_07687299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312965914|ref|ZP_07780140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|300299607|gb|EFJ55992.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 185-1]
 gi|300305950|gb|EFJ60470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 200-1]
 gi|300407786|gb|EFJ91324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 45-1]
 gi|300416112|gb|EFJ99422.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 115-1]
 gi|300420812|gb|EFK04123.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 182-1]
 gi|300463903|gb|EFK27396.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 187-1]
 gi|300528948|gb|EFK50010.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 107-1]
 gi|300844428|gb|EFK72188.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 78-1]
 gi|301075097|gb|EFK89903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 146-1]
 gi|308123157|gb|EFO60419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 145-7]
 gi|312289157|gb|EFR17051.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 2362-75]
 gi|315288404|gb|EFU47802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 110-3]
 gi|315298998|gb|EFU58252.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 16-3]
 gi|324005176|gb|EGB74395.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 57-2]
 gi|324013743|gb|EGB82962.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 60-1]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|171316209|ref|ZP_02905432.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098623|gb|EDT43420.1| UDP-N-acetylmuramate/alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 465

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 91/412 (22%), Positives = 144/412 (34%), Gaps = 42/412 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GHD    A   GA  VVV+T + +     L+    GV  V  A+  LA   RL+     I
Sbjct: 56  GHDAANIA---GANAVVVSTAVRSDNPEVLAARHQGVPIVQRAV-MLAELMRLKQG---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L++       +      +      AR+    DF + E   S 
Sbjct: 109 AIAGTHGKTTTTSLVASVLAAGGLDPTFV--IGGRLISAGANARLGTG-DFIVAEADESD 165

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDS 230
              +        P I VIT I   H+  +            E  + L   G+  +  DD 
Sbjct: 166 ASFLNLY-----PVIEVITNIDADHMDTYGHDFARLKQAFIEFTQRLPFYGSAVVCVDDP 220

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIG 289
               +        +     +G S +A  +         +    V  +G++   VV +  G
Sbjct: 221 NVRQIIPFISKPVV----RYGLSPDAQVRAEDIDARDGRMHFTVIREGRAPLAVVLNLPG 276

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI-DESYNA 348
            H  QN L  + I + L    D    AL+ F+    R +RY    +         + Y  
Sbjct: 277 LHNVQNALAAIAIATDLGVSDDAIQLALAEFNGVGRRFQRYGEVPSADGGQYTLIDDYGH 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P  M A ++      P        VL         ++    D   VLS   +  + L+ 
Sbjct: 337 HPVEMAATVAAARGAFPGR----RLVLAFQPHRYTRTRDCFDDFVNVLST--VDALVLTE 390

Query: 409 -----------FHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
                       +  AL  AL     V   +  ++DG+   +     +GDVV
Sbjct: 391 VYAAGEAAIATANGDALSRALRAVGKVDPVFVASVDGVPDALAGVARNGDVV 442


>gi|154488894|ref|ZP_02029743.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
 gi|154083031|gb|EDN82076.1| hypothetical protein BIFADO_02203 [Bifidobacterium adolescentis
           L2-32]
          Length = 479

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 114/371 (30%), Gaps = 32/371 (8%)

Query: 97  KLAVAARLRSKAT-----IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+ S  T      I ITG+ GKT+T EM +  L++       +     +IG  +
Sbjct: 87  ELAWQLRVNSNTTGKPAQWIGITGTNGKTSTTEMTSEMLTACGLAAPAV----GNIGKAV 142

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L       + +    A IT IA  HL    GIE  A+ KA
Sbjct: 143 SHAAVDPANDVLCVELSSFQLHFT----YSLELDCAAITNIADDHLDWHGGIENYAADKA 198

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-----GKSKNADFQLRKWKQC 266
           ++F  ++K      + +        A++     +  ++      G+    D  +      
Sbjct: 199 KVFHNVKKALVYNADDERVTKLAFAAQTAPECRRIGFTLAEPKDGQIGVKDGWIVDMSGI 258

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
                 +     K  +  H           L+   + ++       A K  ++   K+  
Sbjct: 259 GGGEAGKPFQVAKVTDFTHLTEPDGTVYPHLLADALTALALVLGLGADKDKALAALKQFT 318

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
              +R        T    +      S                 + +  +      G   +
Sbjct: 319 PGGHRIQTVAVAKTSDGGTIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAKGSRFE 378

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETMDG------LFLFI 437
               D       + I    + G     + DA   S   I +   + MD            
Sbjct: 379 QLVAD-----QAHTIKAAIIIGKDQQPMLDAFKASAPDIPMSVIDPMDNDTVMARAIDAA 433

Query: 438 QSSLVDGDVVV 448
            +    GDVV+
Sbjct: 434 GTYAQSGDVVL 444


>gi|82546520|ref|YP_410467.1| ligase [Shigella boydii Sb227]
 gi|187734017|ref|YP_001882983.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|81247931|gb|ABB68639.1| putative ligase [Shigella boydii Sb227]
 gi|187431009|gb|ACD10283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii CDC 3083-94]
 gi|320185327|gb|EFW60099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella flexneri CDC
           796-83]
 gi|332087042|gb|EGI92176.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 3594-74]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +         A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADTANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|330501922|ref|YP_004378791.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
 gi|328916208|gb|AEB57039.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           mendocina NK-01]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 117/363 (32%), Gaps = 35/363 (9%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +KA I+AITGS  K+T   ++    ++  K      +   ++G P     +  DV+
Sbjct: 105 FARHAKAPIVAITGSNAKSTVTTLVGEMAAAAGKRV----AVGGNLGTPALDL-LADDVE 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L         +   +A    I+  H+  +SG+     AK  IF G  +  
Sbjct: 160 LYVLELSSFQLETTD----QLNAEVATCLNISEDHMDRYSGLPAYHLAKHRIFRGARQVV 215

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
               +          ++       T + FG  K    +    ++  E+S          +
Sbjct: 216 INRDDA--------LSRPLIADQVTSWEFGLGKPDFKRFGLLEENGEKSLAFRFDALLPV 267

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +   ++  +  L  F     R    +    +G  + 
Sbjct: 268 S-ELKIRGAHNQSNALAALALGHAVGLPMEAMLATLRQFAGLPHRC---QWVGERGGVSY 323

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            D+S   N  +    ++ +  +     G+ + + G   + G    +    +A        
Sbjct: 324 YDDSKATNVGAA---LAAIEGLGADIAGKLVLIAGGDGK-GADFSALKAPVARFCRA--- 376

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSSNSC--G 456
             V L G     L  AL  +  +     +D            GD V++    +S      
Sbjct: 377 --VVLLGRDAELLAAALGDAAPLVRVTILDEAVQRSSELAEAGDAVLLSPACASLDMFKN 434

Query: 457 FYR 459
           F  
Sbjct: 435 FEE 437


>gi|307312991|ref|ZP_07592619.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|306907159|gb|EFN37666.1| UDP-N-acetylmuramate [Escherichia coli W]
 gi|315063544|gb|ADT77871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli W]
 gi|323380377|gb|ADX52645.1| UDP-N-acetylmuramate [Escherichia coli KO11]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|218707842|ref|YP_002415361.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|293402858|ref|ZP_06646955.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298378386|ref|ZP_06988270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
 gi|218434939|emb|CAR15878.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMN026]
 gi|291429773|gb|EFF02787.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1412]
 gi|298280720|gb|EFI22221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli FVEC1302]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 62/368 (16%), Positives = 111/368 (30%), Gaps = 30/368 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLEEFP 469
             LL+  P
Sbjct: 443 QKLLDGLP 450


>gi|324019282|gb|EGB88501.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 117-3]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPTHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|319764337|ref|YP_004128274.1| udp-n-acetylmuramate [Alicycliphilus denitrificans BC]
 gi|317118898|gb|ADV01387.1| UDP-N-acetylmuramate [Alicycliphilus denitrificans BC]
          Length = 463

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 46/363 (12%), Positives = 97/363 (26%), Gaps = 21/363 (5%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDF--GIFE 166
           ++A+ G+ GKTTT  ML   L          +G    + G+   L  +         + E
Sbjct: 113 VLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGISARLGALAAGQARPLFVIE 172

Query: 167 LGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                             RP  AV+  +   H   F  + +I      +   +  +G + 
Sbjct: 173 ADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDLGQIERQFHHLVRTVPPSGRVV 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
           +N  +     +       G+ +  +      A  +   ++       +       +    
Sbjct: 233 VNGLEESLARVLHAGCWSGVASFGAAVSDFCARGEPHDFEVLQRGQAVARVQWALTGVHN 292

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                              +     +            +                T +  
Sbjct: 293 -QLNALAAIAAAEHVGVAPAQAAQALARFENVRRRMELRGTARGISVYDDFAHHPTALRT 351

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           + +     +     +L+   P     +   LG M             L   L   +++  
Sbjct: 352 TLDGLRRRVGGEARILAVFEPRSNTMK---LGTMK----------SQLPWALEQADLAFC 398

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
             +G    A +   P       +  +  L   + ++   GD ++   SN   F  +   L
Sbjct: 399 HTAGLDWDAAEALAPMGARARTAADIPTLVAQVSTAAQPGDHIL-CMSNGS-FGGVHAKL 456

Query: 465 LEE 467
           LEE
Sbjct: 457 LEE 459


>gi|300821335|ref|ZP_07101483.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
 gi|300526224|gb|EFK47293.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 119-7]
          Length = 440

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 88  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 145

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 146 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 205

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 206 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 258

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 259 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 314

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 315 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 367

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 368 FLLQPTHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 425

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 426 QKLLDGLAKKAEAAQ 440


>gi|312114843|ref|YP_004012439.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219972|gb|ADP71340.1| UDP-N-acetylmuramate/alanine ligase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 477

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 68/411 (16%), Positives = 115/411 (27%), Gaps = 54/411 (13%)

Query: 64  GAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           GA +V +++ +      L       +PVF   + L AL K             I +TGS 
Sbjct: 66  GASVVCISSAVKEGNPELQAARERGLPVFSRAETLAALMK---------GYRTICVTGSH 116

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GKTTT  M+   +         +                     + + E   S       
Sbjct: 117 GKTTTTSMIGWVMEKAGLDPTVLVGGVLRS---WGTNARIGASRWMVVEADES-----DA 168

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
               +   I V T I P HL  +  +E +  A       + +TG      D      L  
Sbjct: 169 TFIKLPTEIGVATNIDPEHLDYYGSVEALHEAFRTFLRQIPQTGVAVAGIDHPVVRELTQ 228

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV--------QLQGKSMEVVHHGIG 289
           +  A G     +                    S M          +   +   V     G
Sbjct: 229 ELAASGELPPLTSFGRALDARVKIDNVVSQGASVMFDVVIAGKPGEPPLRHTGVKLQVPG 288

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE----- 344
            H A N    +          D     L+ F   + R            +          
Sbjct: 289 AHNALNAAAAIAACLHAGLSADQIFDGLASFEGVDRRFSPRGEWNGVAIYDDYAHHPAEI 348

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           +   + A   A   V++ + PH   R  ++ G+ C     + +             ++ V
Sbjct: 349 AAVLSAARGAARGRVIAVVQPHRYSRLQSLFGEFCACFADADT-----------VVVTPV 397

Query: 405 WLSGF-----HVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVV 448
           + +G          L D L +  H      +  D L   + +    GD+V+
Sbjct: 398 YSAGEQPNGIDRDTLVDGLRQQGHARIYPVDGEDTLVSTLAAVAQPGDLVL 448


>gi|188582368|ref|YP_001925813.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium populi
           BJ001]
 gi|229620045|sp|B1ZGP5|MURC_METPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|179345866|gb|ACB81278.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium populi
           BJ001]
          Length = 468

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 67/428 (15%), Positives = 121/428 (28%), Gaps = 44/428 (10%)

Query: 35  RSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGV 88
           R ++      F         GH      V+  A LVVV+     D    I +    +  V
Sbjct: 46  RRLSENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                A   LA   R +S    +A+ G+ GKTTT  ++   L +       I     +  
Sbjct: 95  ---RRA-EMLAELMRFKS---CVAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIIN-- 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       D+ + E   S           +   +A++T I P HL +F   + I  
Sbjct: 146 -AYGTNARMGAGDWMVVEADES-----DGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKD 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A     + +   G   +  D    + L      +  + I ++G++  AD +L        
Sbjct: 200 AFRRFIDNIPFYGFAVMCIDHPIVQDLV---GHIEDRRIITYGENPQADVRLIDIDLKGG 256

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           QS   V ++ +            +           +   A       +            
Sbjct: 257 QSRFRVMIRDRRPGFRLEMQDLVLPMPGRHNALNATAALAVAHELGVSEDAIRKALAGFG 316

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-S 387
             +    +         ++          +VL       +G+ IAV+         S   
Sbjct: 317 GVKRRFTRTGEWNGAAIFDDYGHHPVEIAAVLRAARSSTDGKVIAVVQPHRYTRLQSLFE 376

Query: 388 FHIDLAEVLSLYNISHVWLSGF------HVLALKDALPRSIH--VHYSETMDGLFLFIQS 439
                        ++ V+ +G          +L   L    H      E  + L   +  
Sbjct: 377 DFCTCFNDADTVIVAPVYAAGEAPIEGIDRDSLIAGLKARGHRDAVALERPEDLARLVSG 436

Query: 440 SLVDGDVV 447
                D V
Sbjct: 437 RAEPNDYV 444


>gi|85714977|ref|ZP_01045962.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698174|gb|EAQ36046.1| UDP-N-acetylmuramate--L-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 467

 Score = 45.2 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 128/419 (30%), Gaps = 52/419 (12%)

Query: 47  KGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
           K  + +G D           LVV       +   ++     +  V  A   LA   RL+S
Sbjct: 60  KTENVNGAD----------VLVVSTAIKRDNPELMAARAQRIPVVRRA-EMLAELMRLKS 108

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AI G+ GKTTT  M+   L +       I     +              D+ + E
Sbjct: 109 ---CVAIAGTHGKTTTTSMVATLLDAGDFDPTVINGGIIN---AYGTNARLGAGDWMVVE 162

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S           +   IA++T +   HL +F   + +  A     E +   G   + 
Sbjct: 163 ADES-----DGTFLKLPTDIAIVTNVDAEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMC 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GK 279
            D    + +  +        I ++G++  AD +L         S  +V  +        +
Sbjct: 218 IDHPVVQTMVGRIEDR---RIITYGQNPQADVRLVDLAPNGGGSHFKVVFRNRKTDAAHE 274

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
             ++V    G H A N    + +   L     T   AL+ F   + R  +          
Sbjct: 275 IPDLVLPMPGPHNALNATAAIAVAHELGIPDATIRNALAAFGGVKRRFTKTGEWKG---- 330

Query: 340 TLIDESYNANPASM---------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             I + Y  +P  +           A  V++ + PH   R  A+  + C     +    +
Sbjct: 331 VTIIDDYGHHPVEIAAVLKAARESTAGRVVAVVQPHRYTRLQALFEEFCTCFNDADIVVV 390

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLF--IQSSLVDGDVV 447
                     I     +G         L    H       +   L   I S    GD V
Sbjct: 391 AEVYPAGETPI-----AGIDRDHFVLGLRAHGHREVVSLQESAALAGVIASLAKPGDYV 444


>gi|226226832|ref|YP_002760938.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
 gi|226090023|dbj|BAH38468.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gemmatimonas
           aurantiaca T-27]
          Length = 464

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 56/386 (14%), Positives = 116/386 (30%), Gaps = 41/386 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     +PV  V +V  AL       RL+     IA+TG+ GKTTT  ++   L
Sbjct: 85  SAPPLRAAHEAGVPV--VGEVEIAL-------RLQPALRYIAVTGTNGKTTTTALIGHLL 135

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVD-FGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            ++        +   +IG P++   +      +   E+    L +   +     P + V+
Sbjct: 136 RALGVD----AADVGNIGTPVSALALQETPPAWAALEMSSFQLHDTPGIY----PDVGVL 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           TT++P HL  ++ + E    K  +F             D      L       G    +S
Sbjct: 188 TTLSPDHLDRYTSVAEYYGDKQRLFLNAVSQSRWVATADSDAVRELVQ--GIEGQWYWFS 245

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             ++   D                +  + +                 ++++ +       
Sbjct: 246 TKQTDGMDASYHHESGMLHVLGAPLMARDRVPLA--GDHNVANVLAAVLSVMVADASFRT 303

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                              R    +++     I++S   N AS   A++ ++        
Sbjct: 304 GTARAALADAVATFRAPPHRLETVVHRHDVVWINDSKATNVASTLVALAGMT-------R 356

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVH---- 425
             + +LG     G      +  L   L       V   G     +   L   +       
Sbjct: 357 PTVVLLG-----GRHKGEPYTALLPELRRIA-KVVIAYGEAADTIVADLTAPLAGVVPVV 410

Query: 426 --YSETMDGLFLFIQSSLVDGDVVVV 449
             +  +   +     +    GD V++
Sbjct: 411 QVHERSFAAVMTRAHAEASAGDAVLL 436


>gi|167043602|gb|ABZ08296.1| putative Mur ligase family, catalytic domain protein [uncultured
           marine microorganism HF4000_APKG2M17]
          Length = 492

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 78/466 (16%), Positives = 144/466 (30%), Gaps = 64/466 (13%)

Query: 2   NPLWTFHDLLQAIQGHSIGIV-PQGFVNGISIDSRSIAPQEAFFAIKGPH-YDGH--DFI 57
             + +  ++L        G    +  V       R +   +      G   + GH  +++
Sbjct: 43  IGMSSIAEILLIRGYEVSGSDLAENEVT------RHLR--DL-----GARIFKGHSAEYV 89

Query: 58  LHAVQKGAGLVVVNTDMVASIGS-------LSIPVFGVDDVLGALNKLAVAARLRSKATI 110
                 GA +VV ++ +  S            +PV         L +L            
Sbjct: 90  G-----GACVVVHSSAVDPSQNPETLYAEEKHVPVIRRS---EMLGELMRMKFG------ 135

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I I G+ GKTTT  M    + +       I       G         V  +  I  +   
Sbjct: 136 IGIAGTHGKTTTTTMAGHVVGAGAFDPTIIVG-----GKVAAFGSNAVSGEGDIILIEAD 190

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      + P +AVIT I   HL  +  +E+I +A  +    +   G   +  DD 
Sbjct: 191 E---YDRTFLRLTPSLAVITNIDADHLDCYEDLEDIRAAFIQYASSVPFFGAAIVCLDDE 247

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               + +K     +           A+   ++ +      +  +  + +   V     G 
Sbjct: 248 NVRGIISKIDRRVVTYGTLRQAQIRAESIQQEGRVMH---FDVISSEERLGRVSLDAPGR 304

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  + I   L    +     +S F   + R       + +    L+ + Y  +P
Sbjct: 305 HNVLNALAAIAIGIELDMKFEDISAGISAFQGVDRRMH----EIGEARGVLVVDDYAHHP 360

Query: 351 ASMKAAISVLSQISPHGEGRRIAVL-------GDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +KA +   S   P  E R +AV            E    +  F  D+  ++ ++    
Sbjct: 361 TEIKATLEAASGCWP--ERRIVAVFQPHLYSRTRDFEDDFAAAFFDADVVVIMDVFGARE 418

Query: 404 VWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
             + G     +     +S H  V Y    + L   +      GDV+
Sbjct: 419 EPIEGITGEVIATGAKKSGHPHVIYVPQKEDLVGRMLELSKPGDVI 464


>gi|330003489|ref|ZP_08304644.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
 gi|328536942|gb|EGF63238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. MS 92-3]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A       + +   G  +       K        W  +    K  EV    
Sbjct: 222 NDINLKQVMAMGCWSEQELVGEQGHWQA------KKLNADASQWEVLLDGEKVGEVKWAL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A +  L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLQALRG-KVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLEE 467
             LL++
Sbjct: 443 QKLLDK 448


>gi|167749944|ref|ZP_02422071.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
 gi|167657111|gb|EDS01241.1| hypothetical protein EUBSIR_00912 [Eubacterium siraeum DSM 15702]
          Length = 461

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 51/391 (13%), Positives = 119/391 (30%), Gaps = 38/391 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +           L  L  +         + ++G+ GKTTT  M
Sbjct: 75  AAIMSDNPELIAAKASGVKTVE----RCELLGLVTSWYN----KAVCVSGTHGKTTTSSM 126

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           LT    +     + +          +  +      D  + E       E       + P+
Sbjct: 127 LTHMYLAQNVDLSTVIGGKLK---AIGGSGRAGSSDVMVCEAC-----EFSNTFLHLFPN 178

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I++I  I   HL  F  ++ + ++  +  +         L  +      ++A   +   K
Sbjct: 179 ISIILNIDADHLDFFKTMDNLRASFTKFCDNTTD----ILVVNGDDENTMRAVKASGFNK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +FGK+    +     K+ S+       ++  S               +   +   + 
Sbjct: 235 QIITFGKTDKNRYYPENIKRISDFQTDFDLMENGSKIERISIHVPGAHNVLNA-VAACAA 293

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA---------NPASMKAA 356
             A   T            G G+R+      G  T++D+  +             +M+  
Sbjct: 294 ALATGVTPENINKGLSTFWGAGRRFERLATIGGITVVDDYAHHPAEVAATLKTAKAMQDF 353

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
             V +   P    R   ++ D     E++    +         N  +V+        L  
Sbjct: 354 KRVWAVHQPFTYSRTYTLMDDFASALEIADKVVLTEIMGSREKNTYNVY-----SADLAA 408

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +P      +  T + +  ++  +    D++
Sbjct: 409 KIPG---CKWFPTFEEVARYVADNAESDDMI 436


>gi|257483452|ref|ZP_05637493.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 295

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 25/277 (9%)

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AV+T ++  HL     +E  A+AKA++           +N DD+F   L        + 
Sbjct: 1   MAVLTNLSRDHLDYHGTMEAYAAAKAKL-FAWSNLKCRVINLDDAFGRELAGIKQESRLI 59

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
           T        +A    R  K   +     +        +    +G     N+L  +G +  
Sbjct: 60  TY--SQLDSSAYLYCRDAKFDDDGVRATLVTPQGEHFLRSSLLGRFNLSNVLSAVGALLG 117

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           L   +D  +K L       GR +R   A           + +A          VL  + P
Sbjct: 118 LDYALDEILKVLPKLEGPVGRMQRLGGADKPLVVVDYAHTPDA-------LEKVLEALRP 170

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKD 416
           H +GR + + G     G         L   +       VW++  +            ++ 
Sbjct: 171 HAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSELPASIFDDIRP 226

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                  V + E        + +S    DVVV+  K 
Sbjct: 227 GFTAVDKVRFIEGRGQAIAELIASASADDVVVLAGKG 263


>gi|159477675|ref|XP_001696934.1| hypothetical protein CHLREDRAFT_192673 [Chlamydomonas reinhardtii]
 gi|158274846|gb|EDP00626.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 178

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 23/104 (22%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDG---HDFILH---AVQKGAGLVV-- 69
                P   V G+  +   + P + +      H++G    D +     A+++GA LVV  
Sbjct: 80  LAAHFPNIEVTGVQSNPHLVTPGDVYV-----HHEGLTDEDQVAAVSVALEQGAVLVVAP 134

Query: 70  ----------VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
                     V  D +  +    +P+  V D   A ++LA A  
Sbjct: 135 HLPKDSTGLHVGEDPLEGVVPDEVPLVRVKDSTEAGSRLAAAFY 178


>gi|307084812|ref|ZP_07493925.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
 gi|308365619|gb|EFP54470.1| putative Mur ligase family, glutamate ligase domain protein
           [Mycobacterium tuberculosis SUMu012]
          Length = 250

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 18/101 (17%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------L 414
            H + R   V G     G+        +  + +      V ++  +             L
Sbjct: 123 AHPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREIL 178

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             A          E            +    GDVV++  K 
Sbjct: 179 AGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 219


>gi|289574841|ref|ZP_06455068.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
 gi|289539272|gb|EFD43850.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           MurE [Mycobacterium tuberculosis K85]
          Length = 290

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 18/101 (17%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------L 414
            H + R   V G     G+        +  + +      V ++  +             L
Sbjct: 163 AHPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREIL 218

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             A          E            +    GDVV++  K 
Sbjct: 219 AGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 259


>gi|302528468|ref|ZP_07280810.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302437363|gb|EFL09179.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 472

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 141/399 (35%), Gaps = 47/399 (11%)

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             VVV+T +  +   L       IPV        AL  L    R      +  I G+ GK
Sbjct: 76  SAVVVSTAIKETNPELAAARERGIPVLHRA---QALAGLMAGHR------VACIAGTHGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           T+T  MLT+AL + +   +     + +            +    + E   S    + +  
Sbjct: 127 TSTTSMLTVALQNCRMDPSFAIGGDLNE---SGANAHHGEGGVFVAEADESDGSFLTYT- 182

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
               P +AV+T + P HL +    E      ++    +E  G + +  DD     L  ++
Sbjct: 183 ----PSVAVVTNVEPDHLDHHGTAEAYVKVFSDFVGQIEPGGLLIVCADDEGAARLGEEA 238

Query: 240 HALGIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            A G++   Y    S   D ++  +    +   + + L G+  ++     G HMA N + 
Sbjct: 239 AAAGVRVRRYGRAASGEGDVRVLDYTPAPDGGVVRIALDGEEHDLRVAVPGEHMALNAVA 298

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L A +D     L+ F     R +    A +   +    + Y  +P  + A + 
Sbjct: 299 ALLAGLELGAPLDGMAAGLAAFGGVRRRFEFKGRAGDVRVY----DDYAHHPTEVAAQLR 354

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
            +   +    G    V+     +   +Q+F  + AE LSL     V +            
Sbjct: 355 AVRTAA----GNGRVVVVFQPHLYSRTQTFAAEFAEALSLA--DEVVVLDVFGAREEPVP 408

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           G     +  A   ++ VHY    D     +   +  GD+
Sbjct: 409 GVTGALI--AGRVTVPVHYQPAFDVAAGLVADLVRPGDL 445


>gi|157693382|ref|YP_001487844.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
 gi|167017279|sp|A8FGB7|MURC_BACP2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|157682140|gb|ABV63284.1| UDP-N-acetylmuramate--L-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 432

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 77/459 (16%), Positives = 142/459 (30%), Gaps = 79/459 (17%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFV--------NGISI---DSRSIAPQEAFFAIKGP 49
           M+PL     +L        G   +  +          I I   D  +I P     A    
Sbjct: 14  MSPL---AQILHDTGYTVQGSDIEKHIFTQKALEERNIKILPFDPDNIQPGMTVIA---- 66

Query: 50  HYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
              G+ F                  +    S  IPV         L +   +       T
Sbjct: 67  ---GNAFPD------------THPEIERALSEGIPVIR---YHKFLGEYMDSF------T 102

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            +AITG+ GKT+T  +L   + S K T   IG  +              + ++ +FE   
Sbjct: 103 NVAITGAHGKTSTTGLLAHVMQSAKPTSYLIGDGSGMG---------KENSEYFVFEACE 153

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                + +      P  A++T I   H   FS I+++  A   +    +    I    DD
Sbjct: 154 YRRHFLSYH-----PDYAIMTNIDFDHPDYFSDIDDVFDAFQNMAL--QVKKAIIACGDD 206

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                ++AK        +  +G ++  DFQ R   + +E +  +V ++    +  +    
Sbjct: 207 EHLPKIQAK------VPVVYYGFNEENDFQARNVVKNTEGTTFDVFVRNTFYDTFYIPAY 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            +      + +  +    +     IK          R    +    Q    ++ + Y  +
Sbjct: 261 GNHNVLNSLAVIALCHYESIDVELIKGALTTFGGVKRRFNEKVVGAQ----VLIDDYAHH 316

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  ++  I    Q  P  E     V          +Q F  + A+ L      +V+L   
Sbjct: 317 PTEIEVTIEAARQKYPDRE----IVAVFQPHTFTRTQQFLSEFADSLKKA--DYVYLC-- 368

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               +  +   +I     E +       Q    +   V+
Sbjct: 369 ---DIFGSARENIGKLSIEDLREKIPQAQLIAEEDTSVL 404


>gi|291288102|ref|YP_003504918.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885262|gb|ADD68962.1| UDP-N-acetylmuramate/alanine ligase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 465

 Score = 45.2 bits (105), Expect = 0.024,   Method: Composition-based stats.
 Identities = 76/411 (18%), Positives = 133/411 (32%), Gaps = 44/411 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRS 106
           GH +  +A   GA +VV ++ +  +   L       IPV       G +  LA   RL+ 
Sbjct: 59  GHRY-ENAE--GADVVVYSSAVRETNPELVCAKDNFIPVIK----RGEM--LAELMRLKY 109

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI+GS GKTTT  M+   L++ K     +     +              +  + E
Sbjct: 110 S---IAISGSHGKTTTTSMVAEILNAAKLDPTVVVGGILNT---KDTNATLGSGNVIVAE 163

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S          L+ P +A++T I   H   +  +E++    A+    +   G+  L 
Sbjct: 164 ADES-----DRSFLLMSPSVALVTNIDFEHPDTYRDLEDVKRTFADFISRVPFYGSAVLC 218

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVH 285
            +D     L      L  +   ++G    AD      +Q      +  +    K+  +  
Sbjct: 219 LEDDNTADLIP----LIDRRFVTYGFRAQADVHGVNVEQKGFSMQFDVIISGEKAGRIKL 274

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE- 344
              G H   N L  + + +       T  +AL  F   + R                   
Sbjct: 275 GFPGEHNVLNALGAIAVATQFDIPFRTIKRALEGFKGVQRRLTSRYDDGECIVMDDYGHH 334

Query: 345 -----SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                +             +L+   PH   R  A++ +       +    I      S  
Sbjct: 335 PTEIKTTLKAVRGAYPDKKILAIFQPHRYSRTAALMKEFATAFFDADMLFITDIYAASEE 394

Query: 400 NISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            I      G    A+   +      +V Y    DG+F ++     DG V++
Sbjct: 395 KID-----GVDSEAMVKEIKTRGFKNVKYIPGFDGIFEYLHEYGCDGTVML 440


>gi|225387337|ref|ZP_03757101.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
 gi|225046549|gb|EEG56795.1| hypothetical protein CLOSTASPAR_01090 [Clostridium asparagiforme
           DSM 15981]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 111/360 (30%), Gaps = 37/360 (10%)

Query: 92  LGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             A+   A       +  II ITG+ GK+TT  +L   L S  +          +IG+P 
Sbjct: 88  RCAILSQAELFFHLFRDQIIGITGTKGKSTTTSLLYHVLKSAGQDC----VVMGNIGIPA 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                 +  D  I      H          V PHI V+  I   HL ++  +E+  +AK 
Sbjct: 144 FDHLEEIGPDTRIVFELSCHQL----EYMTVSPHIGVLINIHEEHLDHYGTMEKYVAAKH 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            IF   +    +  N                    +   G ++            +    
Sbjct: 200 RIFRNQDSDDILVCNMQCLP-------EPGECPSRLIRVGTNRPDADVNVDNCGENGTFV 252

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                + +  E     +G H   ++ +   +  +L        + L  + P   R    +
Sbjct: 253 DYGCRRYRIPETEIRLLGQHNYFDIAVVYAVCGLLGIGEAAFTEGLKSYEPLPHRL---Q 309

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +      D+S +   A+   A+  L+            ++G M          + +
Sbjct: 310 YLGQRDGVKYYDDSISTICATTIQALKTLTD-------ADTVLIGGM-----DRGIDYGE 357

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRS-------IHVHYSETMDGLFLFIQSSLVDG 444
           L + LS   I H+ L       + + + R          +  ++ ++      +S    G
Sbjct: 358 LIQFLSGSPIPHIVLMEATGRRIYEEIGRDYPEFAGRDRLILADHLEEAVRAARSVTRPG 417


>gi|161505077|ref|YP_001572189.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866424|gb|ABX23047.1| hypothetical protein SARI_03211 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 113/365 (30%), Gaps = 28/365 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+   + F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESLFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 206

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 207 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 261

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 262 GLVGEHNMHNGLMAIAATRHVGVAPAEAASALGSFINARRRLELRGEAHGVTVYDDFAHH 321

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 322 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 373

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 374 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 431

Query: 463 LLLEE 467
            LL+ 
Sbjct: 432 KLLDR 436


>gi|71909112|ref|YP_286699.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
 gi|118595653|sp|Q47AA2|MURD_DECAR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71848733|gb|AAZ48229.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Dechloromonas
           aromatica RCB]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 65/397 (16%), Positives = 124/397 (31%), Gaps = 41/397 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL-AVAARLR-SKATIIAITG 115
             A   GA  V ++  +  +   ++         L +  +L A   R +   + IIAITG
Sbjct: 61  AEATFAGADFVALSPGVPKATPEIAALEI----PLISEIELFADGVREQVPNSQIIAITG 116

Query: 116 SVGKTTTKEMLTIALSSIKKTYA-CIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           S GKTTT  +    L+        C     + +   +            + EL    L  
Sbjct: 117 SNGKTTTTALTAHLLNGAGVPAIACGNISPSALDALMDAQDAGALPQVWVVELSSFQLET 176

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
              L        A +  ++  HL  +   +   A+AK+ +F+G         +       
Sbjct: 177 THHLNA----AAATVLNVSEDHLDRYEGSLANYAAAKSRVFQGKGVMVLNRDDDW----- 227

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
              + ++    + + +FG +                       +GK   V    +     
Sbjct: 228 ---SMANGRCGRKMVTFGLNAAPRGVDY-------GYADGAIWRGKDKLVAIDALKLSGL 277

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N    +  +++  A     ++ +       G   R       G    +D+S   N  + 
Sbjct: 278 HNAANAMAALALCEAIGVDPLRLIEPLKGFSGLPHRVETVAEIGGVLYVDDSKGTNVGAT 337

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
            AAI  +         +   VLG   +  + S        +     +   V L G    A
Sbjct: 338 LAAIEGM-------GRKVAIVLGGDGKGQDFSP------LKPALEKHGRAVALIGRDAAA 384

Query: 414 LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  AL    +       M+   L++ +    GD V++
Sbjct: 385 IGMALEGSGVPTRILGDMEAAVLWLAAQAQAGDCVLL 421


>gi|94309648|ref|YP_582858.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
 gi|93353500|gb|ABF07589.1| cyanophycin synthetase [Cupriavidus metallidurans CH34]
          Length = 856

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 123/378 (32%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  L+S                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHILASNGLRMGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +        S I   E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYISTVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +            +  G    A  + +  +        
Sbjct: 588 IVQNVAPHGMAVLNAADEMVARMADACPGTVTFFAHDAGLPTMALHRAQGRRVVFVEGDQ 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   EV++    + +  +G      +N + ++     L  D     +AL+ F    
Sbjct: 648 IVATEGDTEVRIPLADIPLTRNGSIGFQVENAMSSIAAAWALGIDWAVIRRALATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP +++A  + +  +       R+ V+    +  + 
Sbjct: 708 ATAPGRFNVFDFKGATLIAD-YGHNPDAIQALCNAVETMPSKR---RVVVISGAGDRRDE 763

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                  +   +       V L           G  +  L++ L  +    + E + G  
Sbjct: 764 DIRKQTQILGGV----FDEVVLYQDQCQRGREDGEVLALLREGLQGAQRTSHVEEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  S L  GD+ ++
Sbjct: 820 VAIDTALSHLQPGDLCLI 837


>gi|206579371|ref|YP_002240813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288937467|ref|YP_003441526.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|290512207|ref|ZP_06551574.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
 gi|206568429|gb|ACI10205.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella pneumoniae 342]
 gi|288892176|gb|ADC60494.1| UDP-N-acetylmuramate [Klebsiella variicola At-22]
 gi|289775202|gb|EFD83203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Klebsiella sp. 1_1_55]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A       + +   G  +       K        W  +    K  EV    
Sbjct: 222 NDINLKQVMAMGCWSEQELVGEQGHWQA------KKLNADASQWEVLLDGEKVGEVKWAL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A +  L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLQALRG-KVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLEE 467
             LL++
Sbjct: 443 QKLLDK 448


>gi|109947188|ref|YP_664416.1| hypothetical protein Hac_0606 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714409|emb|CAJ99417.1| conserved hypothetical protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 335

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H FI  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFAA-----KD-HAFIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++   +    +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|37521885|ref|NP_925262.1| UDP-N-acetylmuramate--L-alanine ligase [Gloeobacter violaceus PCC
           7421]
 gi|44888167|sp|Q7NI67|MURC_GLOVI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|35212884|dbj|BAC90257.1| UDP-N-acetylmuramate-alanine ligase [Gloeobacter violaceus PCC
           7421]
          Length = 460

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 64/386 (16%), Positives = 126/386 (32%), Gaps = 44/386 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L +LA   R      +I ++G+ GKTTT  ++      +                 L   
Sbjct: 104 LAQLAEGYR------MIGVSGTHGKTTTSSLIA---VMLYHCGLDPTVVVGGEVDELGGN 154

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                    + E+  S          L  P +AV+T I   HL +++ +E+I  A  +  
Sbjct: 155 ARLGSGPHLVAEVDES-----DGSLVLFSPEVAVVTNIEGDHLDHYANLEQIVEAFQQYA 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                                +A    + +   YS      AD+   +    ++ +   V
Sbjct: 210 NQARVVVGCLDC---------QAVRDRMPLTVSYSLDGHPQADYTADRVSFTAQGTTARV 260

Query: 275 -QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            +      E+    +G H   N L  + +   L    +     L  F     R +     
Sbjct: 261 LERGEVLGELSLKLLGRHNLANALAAVAVGRYLGLSFEQIAAGLREFRGAHRRFE----R 316

Query: 334 LNQGFFTLIDESYNANPASMK--------AAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           + +    +  + Y  +P+ ++            V++   PH   R   +L +       +
Sbjct: 317 IGERDDIVFVDDYAHHPSEVRATLAAARLQGRRVVAVFQPHRYSRSQLLLDEFGTAFGDA 376

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
            +    + E+ +    + + +SG  V   +        VH+  T D L   +++ L  GD
Sbjct: 377 DAVV--VTEIYAAGEANTLGVSGELVA--RRIAAHHPDVHFEATSDSLKRHLEAHLRPGD 432

Query: 446 VVVVKSSNSCG-FYRLINLLLEEFPA 470
           + +       G   R+I  LL+    
Sbjct: 433 LALF---LGAGNLNRIIPELLQRAEP 455


>gi|307140927|ref|ZP_07500283.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|331644982|ref|ZP_08346099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|284924407|emb|CBG37531.1| murein peptide ligase [Escherichia coli 042]
 gi|331035957|gb|EGI08195.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H736]
 gi|332346312|gb|AEE59646.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UMNK88]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPVDAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|226941971|ref|YP_002797045.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Laribacter
           hongkongensis HLHK9]
 gi|226716898|gb|ACO76036.1| MurD [Laribacter hongkongensis HLHK9]
          Length = 456

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 73/435 (16%), Positives = 131/435 (30%), Gaps = 61/435 (14%)

Query: 30  ISIDSRSIAPQEAFFA--IKGPHYDGHDFILHA-VQKGAGLVVVNTDMVASIGSLSIPVF 86
           +  DSR + P     A  + G           A ++ GA            + S  +P  
Sbjct: 36  VVADSREVPPN----AGQLAGV-------AAGAELRAGAFSAATFAGCDVLVLSPGVP-L 83

Query: 87  GVDDVLGALNKL------AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               V     ++         A       +IAITGS GKTT   +    +++        
Sbjct: 84  ATPAVAAFAGEVIGDVEVFARAIAPLAIPVIAITGSNGKTTVTSLAGHLVAA----CGRR 139

Query: 141 GSYNNHIGVPLTLARMPVDV-----DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
           G    +IG+ +  A   ++      +  + EL    L      T  +    A    I+  
Sbjct: 140 GVVAGNIGLAVLDALADIEASGELPECFVLELSSFQL----ETTTSLNAIAATTLNISED 195

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL  +  +   A +KA +F G                + L  ++ A   +    F     
Sbjct: 196 HLDRYRDLLAYADSKAAVFNGGGVQVLNR--------DDLFVRAMARPQRRHVWFSLEDA 247

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
                      +E+        G    +    +      N    L  +++  A       
Sbjct: 248 GADY-----ALAERDGRHWLCAGGEALLPFDAMQLVGLHNAANALAALALCEAAGLPRAG 302

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+     +G   R    L       ID+S   N  + +AA+  +++      G      
Sbjct: 303 LLAGLTTFKGLAHRVEHVLTHEGVDFIDDSKGTNVGATEAALKGMTRPVVLIAG------ 356

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLF 434
                 G+        LA  L+      V L G     ++ AL   ++ +    T++   
Sbjct: 357 ------GDGKGQDFSPLAPALARIG-RAVLLIGRDAPVVRQALAGLALPLIDCATLEEAT 409

Query: 435 LFIQSSLVDGDVVVV 449
                    GDVV++
Sbjct: 410 RRGFELAQPGDVVLL 424


>gi|117919928|ref|YP_869120.1| FolC bifunctional protein [Shewanella sp. ANA-3]
 gi|117612260|gb|ABK47714.1| FolC bifunctional protein [Shewanella sp. ANA-3]
          Length = 432

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 16/154 (10%)

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +       I A  +           R         ++ +  +   A+      ++ Q++
Sbjct: 271 AIVEHGWPHITADIIDKGISSARLTGRLEQVNEQPLILLDVAHNPHAA----RFLVKQLT 326

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDAL 418
           P   G+R+  L  M +           +  V+S   I   +L       G +   L+  L
Sbjct: 327 PMVTGKRVFALCGMLK-----DKDIAGVLPVISPL-IDTWYLVSLQGERGANASLLRQTL 380

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +    H    +   +  +++ +   DVV+V  S
Sbjct: 381 AQDTKAHEFGDIAAAWTALKAQIQPDDVVIVFGS 414


>gi|149927130|ref|ZP_01915387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
 gi|149824069|gb|EDM83290.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Limnobacter
           sp. MED105]
          Length = 495

 Score = 45.2 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 82/324 (25%), Gaps = 28/324 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L   + L    +   + +  I   HL     ++E A  K  IF      
Sbjct: 173 DIWVLELSSFQLHWTKRL----KFDASTVLNITQDHLDWHPDMQEYAQDKFRIFSENGVC 228

Query: 221 GTIFLNYDDSFFELLK----AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                +       L      +         +  FG  +             ++   E  +
Sbjct: 229 VINRDDALVLDANLPAGTRVSTFGTSAPAQVDDFGLIREGGMLWLAQLVGDQEKSQETPI 288

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR----YRC 332
             +  +         +   +     +     ++   A+           +       Y+ 
Sbjct: 289 STRRRKQEEVEPRQKLLMPIEALQVVGLHNASNALAALALCQGLGLPMAKLLHGLRSYQG 348

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             ++    +  +  +    S    +              + + G   +  + S      +
Sbjct: 349 EPHRVQHVVQIDGVDYFDDSKGTNVGATVAALNGLAKPTVLIAGGDGKGQDFSP-LVQPV 407

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV-- 449
           +         HV L G     +  AL    +    + T++       S   +GD V++  
Sbjct: 408 SNY-----CKHVVLIGKDADNMMSALALAQVPCEKAATLEQAVQVAASKAREGDCVLLSP 462

Query: 450 -KSSNSC------GFYRLINLLLE 466
             +S              ++ +  
Sbjct: 463 ACASLDMFRNYVHRAEVFVDAVRA 486


>gi|226950592|ref|YP_002805683.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
 gi|226840954|gb|ACO83620.1| FolC bifunctional protein [Clostridium botulinum A2 str. Kyoto]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 94/314 (29%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +     +          K   +
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCELIKVEDNLINIEIEIIGKNMGQ 238

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           QS+     +      +     + +   + + L +  ++   +      +     K     
Sbjct: 239 QSFKLKTKENTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWPA 298

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R     N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 299 RLEIV-NKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|259419223|ref|ZP_05743140.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345445|gb|EEW57299.1| UDP-N-acetylmuramate--alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 469

 Score = 44.9 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 72/395 (18%), Positives = 127/395 (32%), Gaps = 29/395 (7%)

Query: 65  AGLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A +VV++       A +         V  V  A   LA   RL+S    IAI G+ GKTT
Sbjct: 71  AEVVVISSAIKPGNAELDEARARGLPV--VRRA-EMLAELMRLKSN---IAIGGTHGKTT 124

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   + +           N  I             ++ + E   S         + 
Sbjct: 125 TTTMMAELMVA---GGFDPTVVNGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNR 176

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IAV+T I P H+ ++   + +     E    +   G      D +  + L  +   
Sbjct: 177 LPATIAVVTNIDPEHMEHWGDFDRLRDGFYEFVSNIPFYGLAVCCTDHAEVQALVGRI-- 234

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              + + ++G +  AD +          +  ++ LQ +  ++    +      N+   L 
Sbjct: 235 -SDRRVVTYGFNAQADVRAVNLTYKGGVAHFDILLQAEGQKIEGCTLPMPGDHNVSNALS 293

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++         +  +      G  +R+         T+ID+  +          +   
Sbjct: 294 AVAVCRHLGMKLDEIRAALAAFGGVNRRFTKVGEVDGVTIIDDYGHHPVEIAAVLKAARQ 353

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGFHV------LAL 414
            I   GEGR IAV          S             +  I+ V+ +G           L
Sbjct: 354 AIGSEGEGRVIAVHQPHRYSRLSSLFDDFCACFNDADVVAIAEVFAAGEDPIEGASRDDL 413

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
              L R  H H       D L   ++     GD+V
Sbjct: 414 VAGLIRHGHRHARAILNEDDLLRLVREQARPGDMV 448


>gi|94498831|ref|ZP_01305375.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
 gi|94421719|gb|EAT06776.1| UDP-N-acetylmuramate--alanine ligase [Sphingomonas sp. SKA58]
          Length = 475

 Score = 44.9 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 137/414 (33%), Gaps = 43/414 (10%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATI 110
           GH     A   G A +VV +T +      + + +   V  +  A   LA   RL+S    
Sbjct: 59  GHK----AENLGDAAVVVTSTAIKRGNPEVELALETRVPVIRRA-EMLAELMRLKS---T 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M+   L +       I     +            + D+ + E   S
Sbjct: 111 VAVAGTHGKTTTTSMIAALLDAGGVDPTVINGGIINS---YGSNARLGNSDWMVVEADES 167

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +   IAV+T I P HL ++   + +  A  E    +   G   L  D  
Sbjct: 168 -----DGSFLRLDGTIAVVTNIDPEHLDHYGSFDRVKDAFVEFVGNVPFYGAALLCLDHP 222

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------ 284
             + +  +        I ++G S  AD +    +     +  +V ++ +   V       
Sbjct: 223 EVQAILPRVQDR---RIVTYGFSAQADIRGENVRPVPGGNLFDVLIRDRDGHVEKISDIL 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N L  +G+   L    D        F   + R  +      +G    + +
Sbjct: 280 LPMPGRHNVSNSLAAIGVALQLGITHDVICTGFEKFGGVKRRFTKVGEVQLEGGVATVID 339

Query: 345 SYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A            V++ + PH   R   ++ +  +    +   +      
Sbjct: 340 DYGHHPVEIRAVLAAAREGALGRVVAIVQPHRFTRLRDLMDEFQQAFNDADIVYAAPVYA 399

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS--LVDGDVV 447
                I      G    AL   L R  H H +   D   L  Q +  L   D++
Sbjct: 400 AGEQPIE-----GVDSAALVAGLKRRGHRHAATVADAADLAAQIAADLQPDDMI 448


>gi|194433904|ref|ZP_03066177.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|194417885|gb|EDX33981.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1012]
 gi|332083669|gb|EGI88887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 155-74]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|300788096|ref|YP_003768387.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
 gi|299797610|gb|ADJ47985.1| UDP-N-acetylmuramate--alanine ligase [Amycolatopsis mediterranei
           U32]
          Length = 465

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 137/397 (34%), Gaps = 41/397 (10%)

Query: 66  GLVVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             VVV+    +    + +       V     AL  L    R      +  I G+ GKT+T
Sbjct: 73  SAVVVSTAIKETNPELAAARAAGIPVLHRAQALAGLMEGHR------VACIAGTHGKTST 126

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             MLT+AL   +   +     + +            +    + E   S    + +     
Sbjct: 127 TSMLTVALQHCRLDPSFAIGGDLNE---SGANAHHGEGGVFVAEADESDGSFLTYS---- 179

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P +AV+T + P HL +    E       E    +   G + +  DD   + L  ++  L
Sbjct: 180 -PSVAVVTNVEPDHLDHHGTAEAYTKVFTEFVSRIVPGGLLIVCGDDPAADDLGRQAEDL 238

Query: 243 GIK-TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           G++   Y    +   D ++ ++    +   + + L G+ + V     G HMA N +  L 
Sbjct: 239 GVRVRRYGRTATGPGDARILEYVPAPDGGVVRLVLDGEEVSVRVAVPGEHMALNAIAALL 298

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
               L A V   +  L+ F     R +    A +   +    + Y  +P  + A +  + 
Sbjct: 299 AGIELGAPVPGLVDGLAAFGGVRRRFEFKGRAGDVRVY----DDYAHHPTEVAAQLRAVR 354

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFH 410
             +    G    ++     +   +++F ++ AE LSL     V +            G  
Sbjct: 355 TAA----GSGRVIVVFQPHLYSRTKTFSVEFAEALSLA--DEVVVLDVYGAREEPEPGIT 408

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              + D +  +  VHY    D            GD+V
Sbjct: 409 GALIADRVTAA--VHYEPAFDVAAPLAAGLAKPGDLV 443


>gi|257456474|ref|ZP_05621670.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
 gi|257446134|gb|EEV21181.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           vincentii ATCC 35580]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 S A ++A+TGS GK++T   L   L          G+       PLT       
Sbjct: 107 SIFLKLSSAPVLAVTGSKGKSSTVSALYYGLQQCGIPAFLGGNITVS---PLTFLTETRA 163

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    LG++      ++P IA+IT I P H + +  +E   + K  I+   +K
Sbjct: 164 DTPVVLELSSWQLGDLAH-CPQLKPKIALITHIMPDHQNWYGSMERYVADKKIIYRNQDK 222

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK 245
                 NYDD + ++   ++      
Sbjct: 223 NDYTICNYDDGWGKIFAQETAGQVFW 248


>gi|256845954|ref|ZP_05551412.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
 gi|256719513|gb|EEU33068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           3_1_36A2]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 70/350 (20%), Positives = 116/350 (33%), Gaps = 43/350 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIF 165
           K  IIAITG+ GK+TT   ++  L+          +Y  +IG  L+   +     DF   
Sbjct: 90  KTKIIAITGTNGKSTTTAKISDMLNYAGY----KAAYAGNIGRSLSEVLLKEKDLDFISL 145

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           EL    L  I       +P+I++I  + P H+  +   +E    K  I +   +      
Sbjct: 146 ELSSFQLENIE----NFKPYISMIINMGPDHIERYKSFDEYYDTKFNITKNQTEDLYFIE 201

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N DD   E    +  A  I       K K AD  ++  K C  ++ +    +        
Sbjct: 202 NIDDVEIEKRAEQIKAKKISVS----KIKKADIFVKNDKICHGENSIIDVDKLS------ 251

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N+  TL +V+          K             R     N G    I++S
Sbjct: 252 ----LKGIHNLENTLFMVATAEILKIDREKLKEFLMIATPLEHRTELFFNYGKVKFINDS 307

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  S K AI           G    V                 LAE++   NI  V+
Sbjct: 308 KATNVDSTKFAIQANKNSILICGGYDKGV-------------DLAPLAEMIKE-NIKEVY 353

Query: 406 LSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSL--VDGDVVVV 449
           L G     ++  L +       +H    ++     ++        +V+++
Sbjct: 354 LIGVIADKIEKELKKIGYEDNKIHKLVNLENSLQDMKKRFTKESNEVILL 403


>gi|225174456|ref|ZP_03728455.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
 gi|225170241|gb|EEG79036.1| UDP-N-acetylmuramate/alanine ligase [Dethiobacter alkaliphilus AHT
           1]
          Length = 461

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 69/421 (16%), Positives = 129/421 (30%), Gaps = 47/421 (11%)

Query: 44  FAIKGPHYD-GHD--FILHAVQKGAGLVVVNT------DMVASIGSLSIPVFGVDDVLGA 94
            A +G     GHD  ++      GA LV+ +T         A+     +P++        
Sbjct: 46  LAREGAEVHQGHDKSYVD-----GAELVIYSTAIPRHNPEYAAAVQAGLPIWH----RSK 96

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  LA     R     IAI G+ GKTTT  M+   L+S             +        
Sbjct: 97  L--LAHFLNGRFG---IAIAGTHGKTTTTSMVAKVLTSGGLDPTAFIGGVLND---FGGN 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
                  + + E   S               +AV+T I   H+ ++    + + S   + 
Sbjct: 149 ARIGRSQYVVAEADES-----DNSFLRYNASLAVVTNIEADHMEHYEGDFDLLLSGYRQF 203

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
            + ++  GT  L  +D +   +     +  I      G  +  D + + W       +  
Sbjct: 204 LKNIKPEGTAILYAEDQYLGDMVPDHLSKIITYGRDKGDYRATDLRPQGW----GTRFTV 259

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
            + + +  E+  H  G H   N L  + +   L        K L  F   + R +     
Sbjct: 260 RRGEAELGEIFLHVPGSHNVLNALAAVVVGLELGVSFADIQKGLGEFRGADRRFQFLYQK 319

Query: 334 LNQGFFTLIDES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
            +                    A       V++   PH   R    + D       +   
Sbjct: 320 NDLLVIDDYAHHPTEVQVTLQAARSNKPRRVIAVFQPHRYSRTQYFMDDFARSFGQADKV 379

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +      S   +      G     L + +  + + V   +  + +   + + L  GD+V
Sbjct: 380 FLHRIYAASEEPLE-----GVSSSVLAERIRAQGVDVEQIDDENEIVEKVLAMLQAGDMV 434

Query: 448 V 448
           +
Sbjct: 435 L 435


>gi|213581231|ref|ZP_03363057.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
          Length = 138

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 15/105 (14%)

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
             L     H  G+   V G     G         L   ++      V ++  +       
Sbjct: 10  KALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPR 65

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   +  +  V   E              D DVV++  K 
Sbjct: 66  AIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 110


>gi|170754552|ref|YP_001782797.1| FolC bifunctional protein [Clostridium botulinum B1 str. Okra]
 gi|169119764|gb|ACA43600.1| FolC bifunctional protein [Clostridium botulinum B1 str. Okra]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 102/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCDLIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|73542271|ref|YP_296791.1| cyanophycin synthetase [Ralstonia eutropha JMP134]
 gi|72119684|gb|AAZ61947.1| Cyanophycin synthetase [Ralstonia eutropha JMP134]
          Length = 856

 Score = 44.9 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 61/378 (16%), Positives = 124/378 (32%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  +++                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIRGERIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF---SGIEEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +           S +E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLSFISTVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +      L     +  G+   A  + +  +        
Sbjct: 588 IVQNVAPHGMAVLNAADPMVVRMADACPGLVTFFAHDPGQPAMATHRAQGKRVVFVDGDH 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   E+++    + +  +G      +N + ++G    L  D +   + L+ F    
Sbjct: 648 IVASEGDNEMRIPLAEIPLTRNGTIGFQVENAMSSIGAAWALGIDWNVIRRGLATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP +++A  + +  +           L  +   G+ 
Sbjct: 708 QTAPGRFNVFDYRGATLIAD-YGHNPDAIQALCNAVQTMPAKRR------LVVISGAGDR 760

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                    ++L       V L           G  +  L++ L  +      E + G  
Sbjct: 761 RDEDIRKQTQILGGV-FDEVILYQDQCQRGRADGEVLALLREGLQGATRTSAVEEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  S L  GD+ ++
Sbjct: 820 VAIDTGLSHLQPGDLCLI 837


>gi|320193650|gb|EFW68285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli WV_060327]
 gi|323965623|gb|EGB61077.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli M863]
 gi|327250177|gb|EGE61896.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli STEC_7v]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFDVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|253988935|ref|YP_003040291.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780385|emb|CAQ83546.1| Folylpolyglutamate synthase-folc bifunctional protein [Photorhabdus
           asymbiotica]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 33/290 (11%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H+       E    +     G+ +     +  +  
Sbjct: 149 GLGGRLDATNIVDADIAAITSIALDHIDWLGADREHIGYEKA---GIFRKDRFAVVGEPD 205

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   +  LG K                      E+SW           +    +  
Sbjct: 206 MPSSIAEVADELGAKLFRCGTDWCF---------SQREESWYWQSDDILLSNLPLPNVPL 256

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +      V  AI   ++    +      R  + +    LI +  +   
Sbjct: 257 MNAATAMGVICCLLRQDDKVSQAINEQAIHQGLKNAQLPGRFQIVRESPLLILDVAHNPH 316

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      ++ +++         +LG +  +G+       D+A  L+     I   + + 
Sbjct: 317 AAA----YLVQKLTLLPRQPDSRILGVVGMLGD------KDIAGTLACLSQQIDKWYCAP 366

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                G     L   L +         ++  +    +   + D+VVV  S
Sbjct: 367 LTEFRGADAQELAQHLEQP---QVFTDVERAWYQAMADADEQDIVVVCGS 413


>gi|237796618|ref|YP_002864170.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
 gi|229261845|gb|ACQ52878.1| dihydrofolate synthase/tetrahydrofolylpolyglutamate synthase
           [Clostridium botulinum Ba4 str. 657]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 103/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       +    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVKKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKVGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G +   L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGENPKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|24115458|ref|NP_709968.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30065479|ref|NP_839650.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157163707|ref|YP_001461025.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli HS]
 gi|24054776|gb|AAN45675.1| putative ligase [Shigella flexneri 2a str. 301]
 gi|30043743|gb|AAP19462.1| putative ligase [Shigella flexneri 2a str. 2457T]
 gi|157069387|gb|ABV08642.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli HS]
 gi|281603567|gb|ADA76551.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Shigella flexneri 2002017]
 gi|313646431|gb|EFS10893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2a str. 2457T]
 gi|323171673|gb|EFZ57319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli LT-68]
 gi|332763144|gb|EGJ93387.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2930-71]
 gi|333009274|gb|EGK28730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-218]
 gi|333011919|gb|EGK31304.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-304]
 gi|333012112|gb|EGK31494.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-227]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|330981215|gb|EGH79318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 460

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 135/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 57  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 107

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 108 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 159

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 160 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 215

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 216 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 275

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y      G   ++ + Y  +P  + A IS +   
Sbjct: 276 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVDGGNVMLVDDYGHHPREVAAVISAVRGG 335

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 336 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPVPGADSRNL 391

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 392 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 427


>gi|302384555|ref|YP_003820377.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
 gi|302195183|gb|ADL02754.1| UDP-N-acetylmuramate/alanine ligase [Clostridium saccharolyticum
           WM1]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 128/411 (31%), Gaps = 49/411 (11%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              V  +    A      +P+          L ++            IA++G+ GKTTT 
Sbjct: 76  TAAVHPDNPEYAEAKEKGLPIL----SRAELLGQMMKNYENS-----IAVSGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+T  L + +              V   L  +  ++  G   L ++   E         
Sbjct: 127 SMITEILLAAEADPTIS--------VGGILNSIGGNIRVGGPGLFVTEACEYTNSFLSFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + VI  I   HL  F  I++I  +     E L   G++ +N D    E +        
Sbjct: 179 PTMEVILNIEADHLDFFKDIKDIRHSFRLFAEKLPPNGSLVINNDIESREEITEGLPCQV 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I      G    A+         +  ++           V     G H   N L    + 
Sbjct: 239 ITYGKKPGSRYQAEAIRFDE--YARATYDLKLDGNVVDTVTLGVPGEHNVYNSLAAAAVC 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + L  + D   K L  F     R +       +     I + Y  +P  ++A +      
Sbjct: 297 TELGIEFDLIKKGLKRFTGTNRRFE----KKGELSGVTIIDDYAHHPQEIRATLETAKHY 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
                      +         +++F  + A+ LSL     V L+           G    
Sbjct: 353 P-----HNKLWVAFQPHTYTRTKAFLEEFADALSLA--DEVILADIYAARETDDLGISSG 405

Query: 413 ALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
            + + +  R +  HY  + D +  FI  + + GD +++      G   ++ 
Sbjct: 406 DIAERIGKRGVKAHYFSSFDEIETFILENCIHGD-LLIT----MGAGDIVK 451


>gi|300933353|ref|ZP_07148609.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium resistens
           DSM 45100]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 73/455 (16%), Positives = 138/455 (30%), Gaps = 73/455 (16%)

Query: 33  DSRSIAPQEAFFAIK--GPHYD-GHDFILHAVQKGAGL----VVV--------NTDMVAS 77
           DSRSI       A++  G   + GH     A    AG     VVV        +   +++
Sbjct: 41  DSRSI------LALRTAGATVNIGH----SAANLTAGGELPTVVVTSFAAIPQDNPELSA 90

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
               +IPV    DV   L +L V  R         + G+ GKT+T  M   AL +     
Sbjct: 91  ARDNNIPVVRRSDV---LAQLMVDRRA------FLLAGTHGKTSTTSMAVAALQAAGWDP 141

Query: 138 ACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
           +          +            D  + E   S    + +     +P +AV+T + P H
Sbjct: 142 SFAIGGQ----LNRAGTNAHHGTGDVFVAEADESDGSFLSY-----QPEVAVVTNVEPDH 192

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA--KSHALGIKTIYSFGKSK 254
           L  F   E            +   GT+ +  DD+    L           +  Y      
Sbjct: 193 LDYFGTEEAYREVFERFAGCVVTGGTLVVCLDDAGSRALAQSLSRSIPADERDYRILGYG 252

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                    +  +     ++++     EV          + + + +    ++       +
Sbjct: 253 TRAAVEDAPEVEAGAIIEDMRITPAGTEVSVRFFDDEAPRVLRVAIPGSHMVLNATAAVL 312

Query: 315 KAL----------SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
                              +G  +R+    +     + D+  +          +   +I 
Sbjct: 313 GGALLGADIDKLLEGIAEFDGVRRRFEYHGSVNDVHVYDDYAHHPTEVTAVLSAARERIE 372

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVLA 413
             G+GR IAV      +   + +F  + A   +L     V L            G     
Sbjct: 373 AQGKGRVIAVFQP--HLYSRTMTFADEFA--AALSLADEVVLLDIFGARENPVEGVDSRV 428

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + D +  ++   Y+   + +   +      GD+V+
Sbjct: 429 IGDKV--TVPWEYAPEFNAVPRTVSKLTRPGDMVL 461


>gi|170021756|ref|YP_001726710.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
 gi|169756684|gb|ACA79383.1| UDP-N-acetylmuramate [Escherichia coli ATCC 8739]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESNFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|71735898|ref|YP_276229.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|109892721|sp|Q48EF9|MURC_PSE14 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71556451|gb|AAZ35662.1| UDP-N-acetylmuramate--alanine ligase [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322449|gb|EFW78542.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330082|gb|EFW86069.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874984|gb|EGH09133.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 486

 Score = 44.9 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 136/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDYGHHPREVSAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|291559992|emb|CBL38792.1| UDP-N-acetylmuramate--L-alanine ligase [butyrate-producing
           bacterium SSC/2]
          Length = 461

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 110/362 (30%), Gaps = 31/362 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++            IA++G+ GKTTT  ML+  L +                  +   
Sbjct: 104 LGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYILLAGNTDPTISVGGILD---AINGN 155

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 +  + E       E         P I++I  I   H+  F  +++I  +  E  
Sbjct: 156 IRVGHSETFVTEAC-----EYTNSFLEFFPKISIILNIEEDHMDFFKDLDDIRHSFREFA 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G + +N +    + +     A       +FG   ++     K            
Sbjct: 211 HKLPDYGYLIINGEIENIDYIVDGLKAE----YATFGLENDSYDYCAKNIGYDAFGHAHF 266

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               K   + H  +  +   N+   L  ++                    G  +R+    
Sbjct: 267 DYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKG 326

Query: 335 NQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               FT++D+  +           A       +     PH   R IA L D  +   LS 
Sbjct: 327 TCNDFTVVDDYAHHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSL 384

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
             H+ + ++ +        +       + D +    + VHY +  D +  FI  +    D
Sbjct: 385 CDHVIVTDIYAAREKDTGIV---SSKDIVDRMADYDVDVHYIKEFDDIEKFILKNCKKND 441

Query: 446 VV 447
           ++
Sbjct: 442 LL 443


>gi|317133419|ref|YP_004092733.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
 gi|315471398|gb|ADU28002.1| UDP-N-acetylmuramate/alanine ligase [Ethanoligenens harbinense
           YUAN-3]
          Length = 454

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 104/363 (28%), Gaps = 34/363 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L+            A++G+ GKTTT  MLT  L    K    +          + 
Sbjct: 100 ELLGLLSRHYADTF-----AVSGTHGKTTTTSMLTQILMMAGKDPTAVIGGKLPF---IG 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
            +      D  + E               + P ++VI  I   HL  F  +E +    A 
Sbjct: 152 GSSRIGATDLMVCEACEFQ-----DSFLTLHPAVSVILNIDNDHLEYFKSMENLIEHFAR 206

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SW 271
                       L Y+      L+A  +A       +FG     D+            ++
Sbjct: 207 F----AAQTGNALIYNGDDANTLRAVRNA--SIHKITFGLDHANDYSADNIGVVDRHLTF 260

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
             ++ +     +     G H   N L      +          + L+ F     R     
Sbjct: 261 DLLRGEQTMAHITLKVPGRHNILNALAACAAAAYAGVPDAVIEEGLNAFSGAGRRF---E 317

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQI---SPHGEGRRIAVLGDMCEMGELSQSF 388
                   T + + Y  +P  + A +     +   +     +          + + + + 
Sbjct: 318 VLGRTANGTTVADDYAHHPTELSATLRAAKDLGYAAVWAVFQPFTFSRTAMLLDDFADAL 377

Query: 389 HIDLAEVLSLYNI---SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
              +A+ + L  I     V   G     L   +P S+        D +  ++       D
Sbjct: 378 --RIADKVVLSPIMGSREVNTYGIRSEDLAAKVPGSV---CLPDFDAIAAYVSEHAGPHD 432

Query: 446 VVV 448
           +V+
Sbjct: 433 LVL 435


>gi|62182860|ref|YP_219277.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|168232768|ref|ZP_02657826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168234558|ref|ZP_02659616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194468881|ref|ZP_03074865.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194736211|ref|YP_002117356.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927013|ref|ZP_03218215.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|224586259|ref|YP_002640058.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62130493|gb|AAX68196.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194455245|gb|EDX44084.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194711713|gb|ACF90934.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197291950|gb|EDY31300.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204323678|gb|EDZ08873.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205332986|gb|EDZ19750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|224470787|gb|ACN48617.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322717362|gb|EFZ08933.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|15804823|ref|NP_290864.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 EDL933]
 gi|26251138|ref|NP_757178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli CFT073]
 gi|91213786|ref|YP_543772.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UTI89]
 gi|110644594|ref|YP_672324.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 536]
 gi|117626579|ref|YP_859902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli APEC O1]
 gi|157156216|ref|YP_001465741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli E24377A]
 gi|168751077|ref|ZP_02776099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|168754809|ref|ZP_02779816.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|168766518|ref|ZP_02791525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|168774050|ref|ZP_02799057.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|168782754|ref|ZP_02807761.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|168784877|ref|ZP_02809884.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|168797807|ref|ZP_02822814.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|191167263|ref|ZP_03029081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|191170715|ref|ZP_03032267.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|193063713|ref|ZP_03044801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194426549|ref|ZP_03059103.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194437852|ref|ZP_03069947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|195937258|ref|ZP_03082640.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208808759|ref|ZP_03251096.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208812704|ref|ZP_03254033.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208820356|ref|ZP_03260676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209400781|ref|YP_002273775.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|215489578|ref|YP_002332009.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218556783|ref|YP_002389697.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218692621|ref|YP_002400833.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|218702934|ref|YP_002410563.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|227886714|ref|ZP_04004519.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|237703908|ref|ZP_04534389.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|253775142|ref|YP_003037973.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254037252|ref|ZP_04871329.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|254164161|ref|YP_003047271.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|254796252|ref|YP_003081089.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019885|ref|ZP_05433750.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Shigella sp. D9]
 gi|256025171|ref|ZP_05439036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia sp. 4_1_40B]
 gi|260847066|ref|YP_003224844.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|260858385|ref|YP_003232276.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|260870988|ref|YP_003237390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|261225353|ref|ZP_05939634.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255394|ref|ZP_05947927.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. FRIK966]
 gi|291285646|ref|YP_003502464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|293417735|ref|ZP_06660357.1| ligase [Escherichia coli B185]
 gi|293476535|ref|ZP_06664943.1| ligase [Escherichia coli B088]
 gi|297520974|ref|ZP_06939360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli OP50]
 gi|301028065|ref|ZP_07191346.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|306815549|ref|ZP_07449698.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|331650364|ref|ZP_08351436.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331656068|ref|ZP_08357056.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331660813|ref|ZP_08361745.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331665902|ref|ZP_08366796.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331681256|ref|ZP_08381893.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332281024|ref|ZP_08393437.1| conserved hypothetical protein [Shigella sp. D9]
 gi|12519234|gb|AAG59430.1|AE005655_9 putative ligase [Escherichia coli O157:H7 str. EDL933]
 gi|26111570|gb|AAN83752.1|AE016771_263 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli CFT073]
 gi|91075360|gb|ABE10241.1| putative ligase [Escherichia coli UTI89]
 gi|110346186|gb|ABG72423.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 536]
 gi|115515703|gb|ABJ03778.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli APEC O1]
 gi|157078246|gb|ABV17954.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E24377A]
 gi|187770281|gb|EDU34125.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4196]
 gi|188014851|gb|EDU52973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4113]
 gi|188999815|gb|EDU68801.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4076]
 gi|189357847|gb|EDU76266.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4401]
 gi|189364179|gb|EDU82598.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4486]
 gi|189374729|gb|EDU93145.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC869]
 gi|189379452|gb|EDU97868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC508]
 gi|190902716|gb|EDV62447.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B7A]
 gi|190908939|gb|EDV68526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli F11]
 gi|192930700|gb|EDV83306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E22]
 gi|194415288|gb|EDX31556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B171]
 gi|194423348|gb|EDX39340.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 101-1]
 gi|208728560|gb|EDZ78161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4206]
 gi|208733981|gb|EDZ82668.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4045]
 gi|208740479|gb|EDZ88161.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4042]
 gi|209162181|gb|ACI39614.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4115]
 gi|209749718|gb|ACI73166.1| putative ligase [Escherichia coli]
 gi|209749720|gb|ACI73167.1| putative ligase [Escherichia coli]
 gi|209749722|gb|ACI73168.1| putative ligase [Escherichia coli]
 gi|209749724|gb|ACI73169.1| putative ligase [Escherichia coli]
 gi|209749726|gb|ACI73170.1| putative ligase [Escherichia coli]
 gi|215267650|emb|CAS12107.1| UDP-N-acetylmuramate:
           L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218363552|emb|CAR01207.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI1]
 gi|218372920|emb|CAR20802.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IAI39]
 gi|218430185|emb|CAR11043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ED1a]
 gi|222036006|emb|CAP78751.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminop
           [Escherichia coli LF82]
 gi|226840358|gb|EEH72360.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           sp. 1_1_43]
 gi|226901820|gb|EEH88079.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836287|gb|EEJ46753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli 83972]
 gi|242379755|emb|CAQ34582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|253326186|gb|ACT30788.1| UDP-N-acetylmuramate [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976064|gb|ACT41735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli B str. REL606]
 gi|253980220|gb|ACT45890.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli BL21(DE3)]
 gi|254595652|gb|ACT75013.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Escherichia coli O157:H7 str.
           TW14359]
 gi|257757034|dbj|BAI28536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O26:H11
           str. 11368]
 gi|257762213|dbj|BAI33710.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O103:H2
           str. 12009]
 gi|257767344|dbj|BAI38839.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O111:H-
           str. 11128]
 gi|281181332|dbj|BAI57662.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE15]
 gi|290765519|gb|ADD59480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320988|gb|EFE60430.1| ligase [Escherichia coli B088]
 gi|291430453|gb|EFF03451.1| ligase [Escherichia coli B185]
 gi|294492555|gb|ADE91311.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli IHE3034]
 gi|299878838|gb|EFI87049.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 196-1]
 gi|305851211|gb|EFM51666.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli NC101]
 gi|307556405|gb|ADN49180.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli ABU 83972]
 gi|307629309|gb|ADN73613.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli UM146]
 gi|312948886|gb|ADR29713.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O83:H1
           str. NRG 857C]
 gi|320190635|gb|EFW65285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. EC1212]
 gi|320200638|gb|EFW75224.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli EC4100B]
 gi|320638992|gb|EFX08638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. G5101]
 gi|320644361|gb|EFX13426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. 493-89]
 gi|320649679|gb|EFX18203.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H- str. H 2687]
 gi|320655075|gb|EFX23036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660582|gb|EFX28043.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O55:H7 str. USDA 5905]
 gi|320665851|gb|EFX32888.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|323157567|gb|EFZ43676.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli EPECa14]
 gi|323162030|gb|EFZ47902.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E128010]
 gi|323176148|gb|EFZ61740.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1180]
 gi|323181966|gb|EFZ67377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 1357]
 gi|323189886|gb|EFZ75164.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli RN587/1]
 gi|323935358|gb|EGB31706.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1520]
 gi|323940153|gb|EGB36347.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E482]
 gi|323950696|gb|EGB46574.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H252]
 gi|323955522|gb|EGB51286.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H263]
 gi|323960276|gb|EGB55917.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H489]
 gi|323970511|gb|EGB65770.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TA007]
 gi|323975422|gb|EGB70523.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli TW10509]
 gi|326345435|gb|EGD69178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1125]
 gi|330908580|gb|EGH37099.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli AA86]
 gi|331040758|gb|EGI12916.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M605]
 gi|331046422|gb|EGI18512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli M718]
 gi|331051855|gb|EGI23894.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA206]
 gi|331056953|gb|EGI28947.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA143]
 gi|331081477|gb|EGI52638.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H299]
 gi|332103376|gb|EGJ06722.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|114046998|ref|YP_737548.1| FolC bifunctional protein [Shewanella sp. MR-7]
 gi|113888440|gb|ABI42491.1| FolC bifunctional protein [Shewanella sp. MR-7]
          Length = 432

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 51/154 (33%), Gaps = 16/154 (10%)

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
            +       I A  +           R         ++ +  +   A+      ++ Q++
Sbjct: 271 AIVEHGWPHIAADIIAKGISSARLTGRLEQVNEQPLILLDVAHNPHAA----RFLVKQLT 326

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDAL 418
           P   G+R+  L  M +           +  V+S   I   +L       G +   L+  L
Sbjct: 327 PMVTGKRVFALCGMLK-----DKDIAGVLPVVSPL-IDTWYLVSLQGERGANASLLRQTL 380

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +    H  + +   +  +++ +   DVV+V  S
Sbjct: 381 AQDTKAHEFDDIASAWTALKAQIQPDDVVIVFGS 414


>gi|71275121|ref|ZP_00651408.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|170731110|ref|YP_001776543.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M12]
 gi|229620438|sp|B0U4Z6|MURC_XYLFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71163930|gb|EAO13645.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Dixon]
 gi|167965903|gb|ACA12913.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M12]
          Length = 477

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 122/404 (30%), Gaps = 49/404 (12%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV++ +      L       IP+        A+  LA   R R     IA+ G+ GKT
Sbjct: 77  CVVVSSAIREDNPELMEARSQRIPIM----PRAAM--LAELMRFRHG---IAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   LS        +        +            + + E   S          
Sbjct: 128 TTTSLIAAVLSEGGLDPTFVIGGQL---LAAGANAKLGAGQWLVVEADES-----DGSFL 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P +AV+T I   HL N+            E  + L   G   L  DD     L  K 
Sbjct: 180 RLNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELAGK- 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLM 298
                + + ++G    AD +     Q   + +  + L   K + V     G H   N L 
Sbjct: 239 ---ARRHVMTYGIDAAADVRAEDVVQDGARMYFTLCLPEGKVIPVTLALPGRHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357
              +   L    +   +AL  F     R        +  G    + + Y  +        
Sbjct: 296 ASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLIDDYGHH------PR 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
            + +  +    G     L    +    S++     A    L ++  + LS          
Sbjct: 350 ELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALVLSEVYPAGEVPI 409

Query: 408 -GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
            G    AL  A+             +  L   +   L +GD+++
Sbjct: 410 PGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLL 453


>gi|82779294|ref|YP_405643.1| putative ligase [Shigella dysenteriae Sd197]
 gi|309784150|ref|ZP_07678790.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
 gi|81243442|gb|ABB64152.1| putative ligase [Shigella dysenteriae Sd197]
 gi|308928013|gb|EFP73480.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella dysenteriae 1617]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHILWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|16132055|ref|NP_418654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|89110952|ref|AP_004732.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K-12
           substr. W3110]
 gi|170083675|ref|YP_001732995.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238903337|ref|YP_002929133.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|3219995|sp|P37773|MPL_ECOLI RecName: Full=UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase; AltName: Full=Murein peptide
           ligase
 gi|537075|gb|AAA97130.1| ORF_o457 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790680|gb|AAC77190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. MG1655]
 gi|85676983|dbj|BAE78233.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli str. K12
           substr. W3110]
 gi|169891510|gb|ACB05217.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli str. K-12 substr. DH10B]
 gi|238863751|gb|ACR65749.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli BW2952]
 gi|260450944|gb|ACX41366.1| UDP-N-acetylmuramate [Escherichia coli DH1]
 gi|315138786|dbj|BAJ45945.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli DH1]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 117/378 (30%), Gaps = 40/378 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  M T  L         +       GVP          + DF + E 
Sbjct: 105 VLAVAGTHGKTTTAGMATWILEQCGYKPGFVIG-----GVPGNFEVSAHLGESDFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I  
Sbjct: 160 DEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIW 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVV 284
             +D   +              +S  +        +  K  ++ S  EV     K  EV 
Sbjct: 220 PENDINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVK 272

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
              +G H   N LM +     +      A  A           +R      +     + +
Sbjct: 273 WSLVGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYD 328

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNI 401
            +  +P ++   ++ L+ +     G    +   + E    +        DLA  L     
Sbjct: 329 DFAHHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA-- 381

Query: 402 SHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
             V+L           + A       H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 382 DEVFLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFG 439

Query: 459 ----RLINLLLEEFPAIQ 472
               +L++ L ++  A Q
Sbjct: 440 GIHQKLLDGLAKKAEAAQ 457


>gi|323945968|gb|EGB42006.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli H120]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLLLNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|238892710|ref|YP_002917444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545026|dbj|BAH61377.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 65/366 (17%), Positives = 111/366 (30%), Gaps = 30/366 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILDACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D   + + A       + +   G  +       K        W  +    K  EV    
Sbjct: 222 NDINLKQVMAMGCWSEQELVGEQGHWQA------KKLNADASQWEVLLDGEKVGEVKWAL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A +  L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLQALRG-KVGGTARILAVLEPRSNTMKMGVCKDDLAPSLGR------ADEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF  + 
Sbjct: 385 FLLQPQHIPWQVAEVAEACVQPAHWSADVDTLAEMVVKTAHPGDHILV-MSNG-GFGGIH 442

Query: 462 NLLLEE 467
             LL++
Sbjct: 443 QKLLDK 448


>gi|254457808|ref|ZP_05071235.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
 gi|207085201|gb|EDZ62486.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
          Length = 330

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              + L                     ++  +   + FFA      D    I  AV  G
Sbjct: 1  MRLENFLALTHAKLTNEPCVNSFENTVFEANKVKRGDLFFAY--NESD----IDLAVSNG 54

Query: 65 AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          A  +V +      I    I    V+D+  AL +L
Sbjct: 55 AYGIVFDKPT--QIIDNEIAWIKVEDIDDALKRL 86


>gi|188496127|ref|ZP_03003397.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|193069798|ref|ZP_03050748.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|331671140|ref|ZP_08371973.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
 gi|188491326|gb|EDU66429.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 53638]
 gi|192956852|gb|EDV87305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli E110019]
 gi|309704739|emb|CBJ04090.1| murein peptide ligase [Escherichia coli ETEC H10407]
 gi|331061729|gb|EGI33655.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA271]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESNFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|16767662|ref|NP_463277.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551340|ref|ZP_02345095.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|167991193|ref|ZP_02572292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197248271|ref|YP_002149331.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263966|ref|ZP_03164040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|200389114|ref|ZP_03215726.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|238910573|ref|ZP_04654410.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|16422979|gb|AAL23236.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197211974|gb|ACH49371.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242221|gb|EDY24841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|199606212|gb|EDZ04757.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205323947|gb|EDZ11786.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205330336|gb|EDZ17100.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249506|emb|CBG27371.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996754|gb|ACY91639.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160903|emb|CBW20435.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312915513|dbj|BAJ39487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222618|gb|EFX47690.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615578|gb|EFY12498.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618638|gb|EFY15527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322621949|gb|EFY18799.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322627673|gb|EFY24464.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322630980|gb|EFY27744.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322637801|gb|EFY34502.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643966|gb|EFY40514.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650959|gb|EFY47344.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656789|gb|EFY53077.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659787|gb|EFY56030.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322662002|gb|EFY58218.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322666249|gb|EFY62427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322672669|gb|EFY68780.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676099|gb|EFY72170.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322680583|gb|EFY76621.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684523|gb|EFY80527.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323132753|gb|ADX20183.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl- meso-
           diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192838|gb|EFZ78064.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323197286|gb|EFZ82426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323201597|gb|EFZ86661.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323206111|gb|EFZ91073.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213119|gb|EFZ97921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215493|gb|EGA00237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219478|gb|EGA03963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227781|gb|EGA11935.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323228951|gb|EGA13080.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323236437|gb|EGA20513.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241891|gb|EGA25920.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247960|gb|EGA31897.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251402|gb|EGA35273.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258232|gb|EGA41909.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263622|gb|EGA47143.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323265782|gb|EGA49278.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270226|gb|EGA53674.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|332991227|gb|AEF10210.1| UDP-N-acetylmuramate/L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|322807473|emb|CBZ05047.1| dihydrofolate synthase [Clostridium botulinum H04402 065]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 102/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|302529277|ref|ZP_07281619.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
 gi|302438172|gb|EFL09988.1| UDP-N-acetylmuramate-alanine ligase [Streptomyces sp. AA4]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 119/375 (31%), Gaps = 20/375 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA   R R     +A+ G+ GKT+T  ML  ALS    +   +        V      
Sbjct: 112 TALAALMRGRFS---VAVAGTHGKTSTAAMLVSALSGAGMSPDYVIGGR----VGGRSGT 164

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +    + E   S    + +     +P + VIT I   HL  +  ++ +A A A   E
Sbjct: 165 GLGETSTIVVEADESDGSLVAY-----QPDVVVITNIDADHLDQYEDVDTLARAFAGFAE 219

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME-V 274
               TG + +  DD        +        +++FG+   AD  +R   +          
Sbjct: 220 RAGTTGFVVMPEDDPHSR-WVTRYLRAKGIRVFTFGEGSPADLSIRLESELPGSVRFTAR 278

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYR 331
                   V     G HMA+N    L     L A    A+  L+ +     R +     R
Sbjct: 279 FRDDDEAAVEVPVPGSHMARNAGAALLTAVKLGASRSGAVLGLAQYPGVGRRFELKGEPR 338

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                  +     S  A+  +++        I+     R+  +     E+ +        
Sbjct: 339 GIRVYDDYACHHTSIRASLTALRRTAMGGRLIAVAEPCRQYRLAQFQAEIADALAVADRV 398

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +   +   + S    +    L     LP     + + T D     +      GD+VV   
Sbjct: 399 VVLPVFDADRSFDHCAPAEALTSLVNLPGHDK-YLARTPDAAARAVGQFARPGDLVVTLG 457

Query: 452 SNSCG--FYRLINLL 464
           +        +++  L
Sbjct: 458 APGMARTAEQIVETL 472


>gi|203288024|ref|YP_002223039.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
 gi|201085244|gb|ACH94818.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia
           recurrentis A1]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 108/351 (30%), Gaps = 32/351 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L +        G+       PL        +   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLYRVLVASYPNVKLGGNIGIS---PLNFLDELDGISPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        + P I++IT +   H + +S  ++    KA+IF              
Sbjct: 169 S----WQLHDIKSLSPMISIITNVYCDHQNYYSNFDDYIEDKAKIFINQNSG-------- 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                +L  +  A            K   F         E  +     +    +     +
Sbjct: 217 -----ILIVQDQAYYNYFSRFKHNLKIVLFSEIMPVDFKEDIFYFKDGKVYLNDGEIGVL 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  ++  +  V +          +  +    +G   R             +++ + 
Sbjct: 272 NESKIVLLISKMITVFVANYLHLNLNISSEIVSIFDGIEHRLEFVKEFNGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   +I     +  HGE   +   G   E+       +  + + +  +  + + L G
Sbjct: 332 IPDSTVFSIKS---LKVHGESIHLITGGTDKEL-------NFKIFDDILSFVKTWILLQG 381

Query: 409 FHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGF 457
              L + + L  R+++     ++     + +   +  D+V+   +S S   
Sbjct: 382 SATLKIIEFLKSRNVNYFIFSSLKECVCYAKEVAMTNDIVLFSPASASFEL 432


>gi|190570951|ref|YP_001975309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
 gi|190357223|emb|CAQ54641.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus Pel]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 99/337 (29%), Gaps = 42/337 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I ITG+ GK+TT  ++   L S         +   ++G+P+    +  D +  + E
Sbjct: 116 NQKVIGITGTNGKSTTTSLIGHILKS----TGKKVAIGGNLGMPILD--LERDAEIYVIE 169

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L     L + +   I+V+  I P H+     +    + K ++  G +        
Sbjct: 170 FSSFQL----ELMNEINVDISVLLNITPDHIDRHGSMNNYIATKLKLINGSK-------- 217

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     A        T   F K       +      S  S      + ++  +   
Sbjct: 218 ---------IAVIGCDNKITSDVFNKFTGNKIPISASMSPSLSSQCLGTGKLENHSLSVS 268

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +  ++  N+   +   ++       +   ++      G   R            I++S 
Sbjct: 269 DVKINLVSNVENIVAAHAVCKLLGVDSSTIVNEIKSFPGLRHRNEFLGKIHNVLFINDSK 328

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S + AI     I          V G   + G  S S H           I   +L
Sbjct: 329 ATNAESTEKAILSYKNI-------YWIVGGKSKKGGIESLSKHF--------TKIRKAFL 373

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            G       + +   I       ++  F       ++
Sbjct: 374 IGESTEVFANIMENKIDYMKCYNLENAFKLAFEEAIN 410


>gi|34558000|ref|NP_907815.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Wolinella succinogenes DSM 1740]
 gi|46576897|sp|Q7M8F9|MURE_WOLSU RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|34483718|emb|CAE10715.1| UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2, 6-DIAMINOPIMELATELIGASE
           [Wolinella succinogenes]
          Length = 434

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 49/442 (11%), Positives = 114/442 (25%), Gaps = 54/442 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           IS DSR   P+ AF   +        +   A +KG  L +     +       IP+ GV 
Sbjct: 13  ISDDSRECTPKSAFLLTQSSRV----YEAAAREKGCKLFL-EPKDLHRFLKTDIPLIGVT 67

Query: 90  DVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
              G     A    +       +A+ G+ G       +   L   K              
Sbjct: 68  GTNGKTTTSAAIYSILLDLGYKVALLGTRG-----FFMNDELIEPKGLTTPPLLELYER- 121

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       DF + E+  S     +     +   + ++T I   HL     +E    
Sbjct: 122 ---IDRAKRAGCDFFVMEV--SSHAIDQKRIEGLNFALKILTNITSDHLDYHKSLEHYIQ 176

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K             F +                 ++   S+G    + + ++ +     
Sbjct: 177 TKNS-----------FFDDSTPKLINKDESKAKFNLQNALSYGIEHPSSYHVKAYSLHGG 225

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                  L+ ++         +++   +     +  ++  ++         F   EG   
Sbjct: 226 IEARIAFLEKEASLSSSLFGKHNLYNLLAAVSAVHRLIGGELQEICDMAERFGGVEG--- 282

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R         ++ +  +           +            + + G     G      
Sbjct: 283 --RMERVSEEPLVVVDFAHTEDG-------MRQIFESFPHQEIVVLFGA----GGDRDRS 329

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLA-----LKDALPRSIH----VHYSETMDGLFLFIQS 439
                  ++      ++L+  +  +     + + + + IH                    
Sbjct: 330 KRPKMGAVADRYAKRIYLTSDNPRSEDPLLIIEEIEKGIHHCQKCVKEPDRVQAIRRAVK 389

Query: 440 SLVDGDVVVVKSSNSCGFYRLI 461
            L   +V+++         ++I
Sbjct: 390 ELEAQEVLLILG-KGDEAEQII 410


>gi|311898890|dbj|BAJ31298.1| putative UDP-N-acetylmuramate--L-alanine ligase [Kitasatospora
           setae KM-6054]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 83/460 (18%), Positives = 151/460 (32%), Gaps = 58/460 (12%)

Query: 7   FHDLLQAIQGHSIGIV--PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
              +L        G        V  +    R +     F         GH      +  G
Sbjct: 24  LAKILAVRGATVSGSDAKESETVRAL----RELGA-TVFV--------GH--AAEHLPAG 68

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
              VVV++ + A    L       +PV    D L AL               +A+ G+ G
Sbjct: 69  TSSVVVSSAIRADNPELVAARERGVPVVHRSDALAALMG---------GRRALAVAGTHG 119

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML ++L  +    +     +                +  + E   S     ++ 
Sbjct: 120 KTTTTSMLAVSLGELGLEPSYAIGGDLDAPGSNAHHGAG---EIFVAEADESDRSFHKYA 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P +A++  +   H +N++ IEEI  +       ++  GT+ ++ D      L  +
Sbjct: 177 -----PEVAIVLNVELDHHANYASIEEIHQSFETFVGRIQPGGTLVVSADHEGARELTRR 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                   + + G +++AD ++         S + V+L G+ +       G H A N + 
Sbjct: 232 VAGRAGLNVVTVGAAEDADVRVLAVAAHGMTSEVTVELGGERLVFTVSVPGRHYAHNAVA 291

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L     L    +   KAL  +     R +       +   T + +SY  +P  M A + 
Sbjct: 292 ALAAGVALGVPAEGLAKALGAYTGVRRRLQ----LKGEARGTQVIDSYAHHPTEMAADLE 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------GF 409
            + +    G GR + V      +   +Q    ++   L+L + S V            G 
Sbjct: 348 AIRE--AAGAGRVLVVFQP--HLFSRTQQLAEEMGLALALADASVVLDIYPAREDPIPGV 403

Query: 410 HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
               + DA  R    V            + +    GD+V+
Sbjct: 404 TAELIIDAARRAGADVRAEHDFAAAPAVLAALAAPGDLVL 443


>gi|260201273|ref|ZP_05768764.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 256

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 18/101 (17%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------L 414
            H + R   V G     G+        +  + +      V ++  +             L
Sbjct: 129 AHPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREIL 184

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             A          E            +    GDVV++  K 
Sbjct: 185 AGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 225


>gi|218697983|ref|YP_002405650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
 gi|218354715|emb|CAV01756.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli 55989]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPTHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|116750889|ref|YP_847576.1| UDP-N-acetylmuramate--alanine ligase [Syntrophobacter fumaroxidans
           MPOB]
 gi|166224744|sp|A0LNY9|MURC_SYNFM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116699953|gb|ABK19141.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 469

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 80/413 (19%), Positives = 141/413 (34%), Gaps = 38/413 (9%)

Query: 48  GPHYD-GHDFILHAVQKGAGLVVVNTDMVASIGSLSIP--VFGVDDVLGALNKLAVAARL 104
           G     GH    H +  GA +VV+++ +            +  V  +  A   LA   RL
Sbjct: 50  GAAVHLGHR-AEHVL--GADVVVLSSAISDDNPENRAAREMGKVPVIRRA-EMLAELMRL 105

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     + + G+ GKTTT  M++  L+        +     +            + DF +
Sbjct: 106 KYS---VLVAGAHGKTTTTSMVSTVLARGGLDPTVVIGGKLN---AWGTNAKLGNGDFMV 159

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S          L+ P IAV+T I   HL  +  +  I     +    +   G   
Sbjct: 160 AEADES-----DGTFLLLPPTIAVVTNIDLEHLDFYRDLAHIQETFLQFINKIPFYGQAV 214

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEV 283
           L  +D   + +  +          ++G S  ADFQ R  +      S+       +  E+
Sbjct: 215 LCLEDENIQSILPRVEK----RFTTYGFSSQADFQARDVRTSGLFSSYRVHSHGDELGEI 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  + +   L  D       L      + R +       +    L+ 
Sbjct: 271 EIRIPGRHNVLNSLAAVAVARELDLDWANIQDGLRDMTGVQRRFQ----IKGEAANVLVI 326

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS-------FHIDLAEVL 396
           + Y  +P+ ++A +  L+   P  + RRI V          +         +H D+  V 
Sbjct: 327 DDYGHHPSEIRAVLQTLADCYP--DRRRIVVFQPHRYTRTRALMEQFARCFYHSDVLLVT 384

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
            +Y  S   + G     L   +    H  +H+ ET++     +   +  GD V
Sbjct: 385 EIYAASETPIPGVTGERLSQEIASHGHHDLHFCETVESALSRLVKLVKPGDAV 437


>gi|296101254|ref|YP_003611400.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055713|gb|ADF60451.1| UDP-N-acetylmuramate--L-alanine ligase [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 491

 Score = 44.9 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 67/399 (16%), Positives = 129/399 (32%), Gaps = 47/399 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   + 
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +            +        + I E   S    +      ++P +A++T I
Sbjct: 144 AGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
              H+  +    E +          L   G   +  DD     L  +      + I ++G
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITTYG 251

Query: 252 KSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
            S++AD ++ ++KQ   +  +   +   + + V  +  G H A N    + + +    D 
Sbjct: 252 FSEDADVRVEEYKQIGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDD 311

Query: 311 DTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           D  ++AL  F     R              +    ++ + Y  +P  + A I       P
Sbjct: 312 DAILRALESFQGTGRRFDFLGEFPLDAVNGKPGTAMLVDDYGHHPTEVDATIKAARAGWP 371

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH-----VWLSGF------HVLAL 414
                   V+         ++  + D A VLS   +       V+ +G          +L
Sbjct: 372 EKN----LVMIFQPHRFTRTRDLYDDFASVLSQ--VDTLLMLDVYSAGETPIPGADSRSL 425

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +     V          +   +   L   D+++++ 
Sbjct: 426 CRTIRGRGKVDPILVSDPAQVAEILAPVLTGNDLILIQG 464


>gi|282859037|ref|ZP_06268173.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
 gi|282588205|gb|EFB93374.1| UDP-N-acetylmuramate--L-alanine ligase [Prevotella bivia
           JCVIHMP010]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 99/344 (28%), Gaps = 28/344 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +   G+ GKTTT  M    +              +      T   +    D+ + E    
Sbjct: 115 LCFAGTHGKTTTSSMCAHIMHQSSVDCNAFLGGISKN--YGTNYILSDKSDYVVIEAD-- 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E     H +RP + VIT+  P HL  +   E    +     E ++  G + ++ D  
Sbjct: 171 ---EFDRSFHWLRPWMTVITSTDPDHLDIYGTKEAYLESFRHYTELIQPGGALIIHKDLE 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               ++              G     + ++++     +       ++     V       
Sbjct: 228 VQPNVQEGVTIYEYSREE--GDFHAENIRIKEGTIVFDFISPIETIK----NVELGQPIP 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
              +N +  + +  +     +   + +  +   + R             +          
Sbjct: 282 INIENGISAMAMAQLNGVSANEIREGMRTYGGVDRRFDFKVMNSKHVVLSDYAHHPKEIL 341

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            S K+   + +        +          +   ++ F+ + A+ L       V L+   
Sbjct: 342 QSAKSLKELYADRKVTVIFQPH--------LYTRTRDFYKEFADAL--SFFDEVILT-EI 390

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSN 453
             A ++ +         + +       +  +V  +V+  VK S 
Sbjct: 391 YPAREEPIEGVTSALIFDNLKAGIE--KQLIVKDEVLNFVK-SR 431


>gi|168183481|ref|ZP_02618145.1| bifunctional protein FolC [Clostridium botulinum Bf]
 gi|182673315|gb|EDT85276.1| bifunctional protein FolC [Clostridium botulinum Bf]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 103/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       +    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVKKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G +   L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGENPKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|24375706|ref|NP_719749.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
 gi|30316031|sp|Q8E9P6|MURD_SHEON RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|24350640|gb|AAN57193.1|AE015855_4 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella
           oneidensis MR-1]
          Length = 439

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 118/379 (31%), Gaps = 48/379 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           NT  V +   + I V G  DV     ++A       K  +I ITGS GKTT   ++   L
Sbjct: 79  NTPEVRAALDMGIEVIG--DVELFAREIADR-----KPCVIGITGSNGKTTVTTLVGEML 131

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
                      +   +IG+P     +  + D  + EL    L      TH +    +   
Sbjct: 132 REAGIAV----AVGGNIGIPALDL-LKENADIFVLELSSFQL----ETTHSLNCVASTCL 182

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            +   H+  +S ++    AK  ++           +      E +             SF
Sbjct: 183 NVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----------NQNSF 232

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +     +          S +               IG H   N+L  + +V  +  D 
Sbjct: 233 GLAPPEGDEWGICD-----SKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVGVDK 287

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
                    F     R         +G  T +++S   N  +  AA+  LS       G 
Sbjct: 288 QVMANVARTFTGLSHRC---EVVGVKGGVTYVNDSKATNVGATVAALDGLSDHL----GD 340

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
            I + G   +  + S            L  ++H+   G     +      +I V   ++M
Sbjct: 341 IILIAGGDGKGADFSPLEEP-------LTKVTHLITLGRDGNKIAALKEGAIKV---DSM 390

Query: 431 DGLFLFIQSSLVDGDVVVV 449
                        GD+V++
Sbjct: 391 AAAVAKAAQLATSGDIVLL 409


>gi|331680370|ref|ZP_08381029.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
 gi|324118795|gb|EGC12687.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           coli E1167]
 gi|331071833|gb|EGI43169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli H591]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPTHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|237806574|ref|ZP_04593278.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331027687|gb|EGI07742.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 75

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +G+ + + G   +  + S              +     L G     +  AL  ++ + + 
Sbjct: 1   DGKLVLIAGGDGKGADFSG------LRAPVAEHCRAAVLLGRDAQLIAQALGDAVPLVHV 54

Query: 428 ETMDGLFLFIQSSLVDGDVVV 448
            T+             GD V+
Sbjct: 55  NTVQAAVEHSAKLAQRGDAVL 75


>gi|145297483|ref|YP_001140324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850255|gb|ABO88576.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 427

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 121/375 (32%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               ++  +IAITGS GK+T   ++   ++              +IG P     +   +D
Sbjct: 91  FVRETQVPVIAITGSNGKSTVTTLVGEMIAEAGLKV----GVGGNIGTPALEL-LKQPMD 145

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      TH +R   +V+  ++  H+  + G+ +  +AK EI +  +   
Sbjct: 146 LCVLELSSFQL----ETTHSLRAAASVVLNLSEDHMDRYQGMADYRAAKMEIHQHSKH-- 199

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                       +L  +  A     +    +S   D           + W+ +  +    
Sbjct: 200 ------------ILVNRDDAQTQPDVGQVWQSFGLDCNGYGRCLLDGRHWLTLHGEPLLP 247

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  + +   +    +  +  L  F     R    R          
Sbjct: 248 VDEMKIVGAHNQANALAAMALCDAVGIPREPQLAVLRRFEGLPHRA---RFVREVNGVRW 304

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +    ++ ++ +    +GR + + G   +  +          + L  + I
Sbjct: 305 INDSKATNVGAT---LAAVAGVREAVKGRLLLLAGGQGKGQDFGP------VQALLGHQI 355

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
            H++  G     L   L           +D       +    GD V++    +S      
Sbjct: 356 DHMYCFGQDADIL---LALGEQTERVSDLDAAVAKAAADARPGDWVLLAPACASLDQFKS 412

Query: 453 ---NSCGFYRLINLL 464
                  F +++  L
Sbjct: 413 FEARGDHFTKMVLAL 427


>gi|160903250|ref|YP_001568831.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
 gi|226722942|sp|A9BGS7|MURD_PETMO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|160360894|gb|ABX32508.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Petrotoga mobilis
           SJ95]
          Length = 431

 Score = 44.9 bits (104), Expect = 0.031,   Method: Composition-based stats.
 Identities = 62/412 (15%), Positives = 131/412 (31%), Gaps = 58/412 (14%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDD-VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
           L +V+  +  +  +  I      D             +   KA  I ITG+ GK+TT  +
Sbjct: 62  LAIVSPGIPPNSKAAKIIFENNIDYTTELEYSWQNIKKENKKAVFIGITGTDGKSTTTSL 121

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +   L               +IGVPL  A   ++  + + E+    +   +       P 
Sbjct: 122 IGHILKFADPLTFVG----GNIGVPLAKASETLN--YYVVEVSSFQIFWSK----TFTPE 171

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I+V+T +AP HL+    + +    KA++     K+G + +   +     L         +
Sbjct: 172 ISVLTNLAPDHLNWHKDLNDYYQTKAKLLLRTLKSGGVAVV--NEDAVNLLNLKDYQASE 229

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            I +F             K   E ++++ + +   +      +       +   +  +++
Sbjct: 230 RIITFS------------KNMIEGNYIKYKDKKIQVNNKIFELDIFKEDILASAVTTLNL 277

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
             ++        S          R     ++      ++S   N  S   A      +  
Sbjct: 278 GISEKIIEEAINSFK----PLKYRLELIKSKNGVNYYNDSKATNVHSAYNAYKSFRGM-- 331

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLALKDALPRSIH 423
                 IA+L  + +        + DL  ++         V + G  +       P +  
Sbjct: 332 ----HYIAILSGIPK--------NEDLTPLIEELKTYAKAVIVFGE-MEKEVKKYPLNSK 378

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVVK---SS---------NSCGFYRLINL 463
             +   ++ +FL++      GD VV     +S             F  L+  
Sbjct: 379 FIFKNNLEEVFLYLSEICEVGDNVVFSPAGASFDKYKNYEERGEHFNLLVEK 430


>gi|317499409|ref|ZP_07957676.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893281|gb|EFV15496.1| UDP-N-acetylmuramate-alanine ligase [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 110/362 (30%), Gaps = 31/362 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++            IA++G+ GKTTT  ML+  L +                  +   
Sbjct: 106 LGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYILLAGNTDPTISVGGILD---AINGN 157

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 +  + E       E         P I++I  I   H+  F  +++I  +  E  
Sbjct: 158 IRVGHSETFVTEAC-----EYTNSFLEFFPKISIILNIEEDHMDFFKDLDDIRHSFREFA 212

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G + +N +    + +     A       +FG   ++     K            
Sbjct: 213 HKLPDYGYLIINGEIENIDYIVDGLKAE----YATFGLENDSYDYCAKNIGYDAFGHAHF 268

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               K   + H  +  +   N+   L  ++                    G  +R+    
Sbjct: 269 DYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKG 328

Query: 335 NQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               FT++D+  +           A       +     PH   R IA L D  +   LS 
Sbjct: 329 TCNDFTVVDDYAHHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSL 386

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
             H+ + ++ +        +       + D +    + VHY +  D +  FI  +    D
Sbjct: 387 CDHVIVTDIYAAREKDTGIV---SSKDIVDRMADYDVDVHYIKEFDDIEKFILKNCKKND 443

Query: 446 VV 447
           ++
Sbjct: 444 LL 445


>gi|167766034|ref|ZP_02438087.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
 gi|167712114|gb|EDS22693.1| hypothetical protein CLOSS21_00527 [Clostridium sp. SS2/1]
          Length = 463

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 110/362 (30%), Gaps = 31/362 (8%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L ++            IA++G+ GKTTT  ML+  L +                  +   
Sbjct: 106 LGQMMHNY-----QNAIAVSGTHGKTTTTSMLSYILLAGNTDPTISVGGILD---AINGN 157

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
                 +  + E       E         P I++I  I   H+  F  +++I  +  E  
Sbjct: 158 IRVGHSETFVTEAC-----EYTNSFLEFFPKISIILNIEEDHMDFFKDLDDIRHSFREFA 212

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             L   G + +N +    + +     A       +FG   ++     K            
Sbjct: 213 HKLPDYGYLIINGEIENIDYIVDGLKAE----YATFGLENDSYDYCAKNIGYDAFGHAHF 268

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
               K   + H  +  +   N+   L  ++                    G  +R+    
Sbjct: 269 DYYYKGEFIDHIQLNVNGEHNVKNALAAIAAAKRIGIDVDTMKKGLLGFTGAKRRFELKG 328

Query: 335 NQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               FT++D+  +           A       +     PH   R IA L D  +   LS 
Sbjct: 329 TCNDFTVVDDYAHHPTEIRATLESAKNYPHNELWCVFQPHTYSRTIAFLDDFAK--ALSL 386

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGD 445
             H+ + ++ +        +       + D +    + VHY +  D +  FI  +    D
Sbjct: 387 CDHVIVTDIYAAREKDTGIV---SSKDIVDRMADYDVDVHYIKEFDDIEKFILKNCKKND 443

Query: 446 VV 447
           ++
Sbjct: 444 LL 445


>gi|153938318|ref|YP_001392439.1| FolC bifunctional protein [Clostridium botulinum F str. Langeland]
 gi|152934214|gb|ABS39712.1| FolC bifunctional protein [Clostridium botulinum F str. Langeland]
 gi|295320425|gb|ADG00803.1| FolC bifunctional protein [Clostridium botulinum F str. 230613]
          Length = 429

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 102/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCDLIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|213019467|ref|ZP_03335273.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
 gi|212994889|gb|EEB55531.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Wolbachia
           endosymbiont of Culex quinquefasciatus JHB]
          Length = 443

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 99/337 (29%), Gaps = 42/337 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              +I ITG+ GK+TT  ++   L S         +   ++G+P+    +  D +  + E
Sbjct: 108 NQKVIGITGTNGKSTTTSLIGHILKS----TGKKVAIGGNLGMPILD--LERDAEIYVIE 161

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                L     L + +   I+V+  I P H+     +    + K ++  G +        
Sbjct: 162 FSSFQL----ELMNEINVDISVLLNITPDHIDRHGSMNNYIATKLKLINGSK-------- 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                     A        T   F K       +      S  S      + ++  +   
Sbjct: 210 ---------IAVIGCDNKITSDVFNKFTGNKIPISASMSPSLSSQCLGTGKLENHSLSVS 260

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +  ++  N+   +   ++       +   ++      G   R            I++S 
Sbjct: 261 DVKINLVSNVENIVAAHAVCKLLGVDSSTIVNEIKSFPGLRHRNEFLGKIHNVLFINDSK 320

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  S + AI     I          V G   + G  S S H           I   +L
Sbjct: 321 ATNAESTEKAILSYKNI-------YWIVGGKSKKGGIESLSKHF--------TKIRKAFL 365

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            G       + +   I       ++  F       ++
Sbjct: 366 IGESTEVFANIMENKIDYMKCYNLENAFKLAFEEAIN 402


>gi|312114846|ref|YP_004012442.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219975|gb|ADP71343.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 470

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 64/406 (15%), Positives = 128/406 (31%), Gaps = 52/406 (12%)

Query: 84  PVFGVD----DVLGALNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + V     + +  +    +  R R    +   +IAITG+ GK+TT  +    L++  +
Sbjct: 82  PHWTVKLAEANGVEIIGDTEIFFRERRRVGANCPVIAITGTNGKSTTTALSNHLLNAAGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
              C      +IG  +      VD    + EL    L     LT  + P   ++  I P 
Sbjct: 142 ASVCG----GNIGRAVLDLPPFVDGQHYVLELSSFQLD----LTPSLDPDAGILLNITPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           H+     +E  A+ K ++F  +   GT  +  DD+  + + A++ A G++T+        
Sbjct: 194 HIDRHGSLEGYAAVKEKLFANMTGGGTAVIGADDALCDAIAARAEARGVRTLRISSTKPV 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           A     +        +       ++   +        A N       ++   +       
Sbjct: 254 ATGIYGEGS----GLFELADGALQNRASLSGIGSLRGAHNAQNAAAALAATRSLGLPWAT 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +       G   R +     G    +++S   N  + + A+   + I     G+  A  
Sbjct: 310 LVEGLQSFPGLAHRMQEIRRIGHVLFVNDSKATNADAAERALLSFTNIYWIAGGKPKA-- 367

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD---- 431
           G +  +                   I   +L G         +   + V  + T+D    
Sbjct: 368 GGIEPLAPFFPR-------------IKKAYLIGVAAEEFAQTIGGRVPVSMARTLDRAVA 414

Query: 432 -GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                       +  VV++    +S             F   +  L
Sbjct: 415 EAAADAAAQGSGEDAVVLLSPACASYDQYPNFEIRGDAFRAAVEAL 460


>gi|225351424|ref|ZP_03742447.1| hypothetical protein BIFPSEUDO_03019 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157768|gb|EEG71051.1| hypothetical protein BIFPSEUDO_03019 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 292

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 6/124 (4%)

Query: 1   MNPLWTFHDLLQAIQGHS-IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T   L              +  V  I+ D  S+ P   F  +     D    +  
Sbjct: 8   MNRRMTLGLLASRYGFDLDPAFATEVTVTSIADDIDSVRPGALF--MPSMQVD-EQQLRQ 64

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSV 117
               GA   VV   +      + IP+   +     L KLA            + A+ GS 
Sbjct: 65  VQALGAYGAVVPHALRGKTDGVQIPLIYAEPTAQQLGKLASEMAGSPSDSLAVFAVAGSN 124

Query: 118 GKTT 121
            +T 
Sbjct: 125 TQTV 128


>gi|298490184|ref|YP_003720361.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
 gi|298232102|gb|ADI63238.1| UDP-N-acetylmuramate/alanine ligase ['Nostoc azollae' 0708]
          Length = 493

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 67/398 (16%), Positives = 124/398 (31%), Gaps = 37/398 (9%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +        +   L  P+    DVL AL  +A           IA+ G+ GKTT
Sbjct: 96  VICSTAINTNNLEYKAALELGCPILHRSDVLAAL--IADYY-------SIAVAGTHGKTT 146

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L                            +  + + E   S           
Sbjct: 147 TTSIIGYMLLQAGLD---PTILVGGEVNAWEGNARLGESKYLVAEADES-----DGSLVK 198

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I VIT I   H  ++  +EE+     +  +G +          D+  +        
Sbjct: 199 HSPAIGVITNIELDHPDHYENLEEVVDTFQKFAQGCQILVGSI--DCDTVRDCFDRPGQR 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTL 300
           L     YS     NAD+ +      ++ +   V  + K+   +    +  H   N L  +
Sbjct: 257 LKPTISYSLHPETNADYTVTNIDYRADGTTALVWEKAKALGVLNLRLLSRHNLSNGLAAV 316

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-------SYNANPASM 353
            +   L  +     K ++ F     R +    A    F             +  A     
Sbjct: 317 AVGRSLGLEFGEIAKGIATFEGARRRFEFRGEAAGITFIDDYAHHPSEIRATLAAASLQA 376

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +    V++   PH   R +  L      G  + +  + L ++ S        +SG  +  
Sbjct: 377 RPGQRVVAIFQPHRYSRTLTFLDQFA--GSFAHADLVVLTDIYSAGEADLGQISGEQLAD 434

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +   +   V Y  T+  +   + S+L  GD+ +   
Sbjct: 435 --EIAKQHPQVIYQPTLSSIRELLLSTLRPGDLALFLG 470


>gi|198242179|ref|YP_002218299.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197936695|gb|ACH74028.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|326626105|gb|EGE32450.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 457

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 113/364 (31%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVSGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|57237678|ref|YP_178926.1| hypothetical protein CJE0924 [Campylobacter jejuni RM1221]
 gi|57166482|gb|AAW35261.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
          Length = 313

 Score = 44.9 bits (104), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +LL AI    I         G +I+   +    AFF     + D    I  AV+KGA
Sbjct: 5   NLGELLNAI---LIHEGSVLSAEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGA 55

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             ++   D+   I    I  F V+++  AL +     
Sbjct: 56  YAIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|315645748|ref|ZP_07898872.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
 gi|315279226|gb|EFU42536.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus vortex V453]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 132/402 (32%), Gaps = 43/402 (10%)

Query: 63  KGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA LVV +T +            L+IPV         L++  + ARL ++   +A+ G+
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPV---------LHRAQMLARLLNERKGVAVAGA 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + +         I               +  +   G  E  ++   E  
Sbjct: 113 HGKTTTSSMIALVMEECGVDPTFIIGGEI--------MNVGTNAKAGEGEHVVAEADESD 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P + V+  I   HL N+ G      A    F    K     +   D       
Sbjct: 165 GSFLQYHPWLGVVLNIEADHLENYEGDFNRLKAAYVQFLSQIKPDGTAVVCADDHN---I 221

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQN 295
                     + ++G   +A++          Q S+M +    +   V     G H   N
Sbjct: 222 QAILPDLKCNVTTYGIHSDAEYTATNLVLGDRQVSFMMLHNGMELGTVELSVPGKHNVYN 281

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
            + T+          +  ++A+  F+  + R +     L +    L+ + Y  +P  ++A
Sbjct: 282 AMATVICCLKGGISFEAIVEAIVKFNGAKRRFQ----VLGEADGILVIDDYAHHPTEIEA 337

Query: 356 AISV--------LSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVWL 406
            IS         ++   P    R   +L         +      D+        I     
Sbjct: 338 TISAAKATGKRIIAVFQPQRYSRTFFLLDAFSRAFSEADEVIITDIYSPAGEKQIEG-IS 396

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           SG  V  +      +    Y  T + +   ++  + +GD+V+
Sbjct: 397 SGKLVELIVQ--NSNAGARYLPTKEDVLNDLKDRVKEGDLVL 436


>gi|206890895|ref|YP_002249131.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742833|gb|ACI21890.1| UDP-N-acetylmuramate--alanine ligase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 67/392 (17%), Positives = 124/392 (31%), Gaps = 45/392 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +    SL IPV         +  LA   RL+     I + G+ GKTTT   +   L
Sbjct: 76  DNPEIIKARSLGIPVI----PRAEM--LAELCRLKYS---ILVAGAHGKTTTTSFIATIL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S        +               +  +   G  E  ++   E       + P ++VIT
Sbjct: 127 SDAGFDPTIVIGGKLK--------SIGTNAKLGQGEFLVAEADESDGSFLKLSPAVSVIT 178

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   HL  F  ++ I  A  E    +   G   L  +      L         +   ++
Sbjct: 179 NIDREHLDYFKNLKRIKKAFLEFANKVPFYGVSVLCRECRHIRDLIPHL----TRRYVTY 234

Query: 251 GKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G  + +DF  +  +  S +  +                 G H   N L T+ +   L+  
Sbjct: 235 GFDEASDFCAKNIEYSSSKVLFDAFFRNKFLGRFAITVPGNHNVLNALATIAVAKELSIP 294

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
           ++   ++L  F     R +         F+    + Y  +P  +KA I     + P    
Sbjct: 295 IEKVRESLENFTGISRRFEFKGEKNGVKFY----DDYGHHPTEIKAVIKTALWLKPQR-- 348

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS-----------GFHVLALKD 416
               +          ++       +V    L     ++L            G     L +
Sbjct: 349 -LCVIFQPHRY--TRTRDLMEQFIQVFKTTLRKNDVLFLMDIYAASEPPIEGVSAEILYE 405

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
            L    ++V ++   + + + I   L +GD+V
Sbjct: 406 KLKNVGVNVIFNPDKEDIKIDILRELKEGDLV 437


>gi|251798403|ref|YP_003013134.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546029|gb|ACT03048.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. JDR-2]
          Length = 462

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 74/404 (18%), Positives = 144/404 (35%), Gaps = 45/404 (11%)

Query: 63  KGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           KGA LVV +T +            L+IPV         L++  + ARL +    +A+ G+
Sbjct: 62  KGADLVVYSTALSKDNVERMAAEELNIPV---------LHRAQMLARLMNAGKGVAVAGA 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + +       A          V +         ++ + E   S    ++
Sbjct: 113 HGKTTTSSMIALVMEK---CDADPTYIIGGEIVNVGTNAKAGKGEYVVAEADESDGSFLQ 169

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           +      P IA++T I P HL N+     ++ +A  +    +++ G   +  DD     L
Sbjct: 170 YH-----PSIAIVTNIEPDHLENYDGDFGKLKAAYVKFLSQVKENGKAIVCADDETITEL 224

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
             K  A     + ++G   +++++         + S+           +     G H   
Sbjct: 225 LPKLDADTASKLITYGIDSDSEYKAENISLGDRKVSFEMTHRGTTLGTLELSVPGRHNVY 284

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N + T+          D   KA+  F   + R +     L +    L+ + Y  +P  ++
Sbjct: 285 NAMATVITCLEAGLSFDNIAKAIHEFIGAKRRFQ----VLGEVNDILVIDDYAHHPTEIQ 340

Query: 355 AAISV--------LSQISPHGEGRRIAVLGDMCEMGELSQS-FHIDLAEVLSLYNISHVW 405
           A IS         ++   P    R   +L         +      D+        I    
Sbjct: 341 ATISAAKATGKRIIAVFQPQRYTRTFFLLEQFSRAFPEADEVIITDIYSPAGEQQIE--- 397

Query: 406 LSGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVV 447
             G H   L + +  + + +  Y  T + + + + + +  GD+V
Sbjct: 398 --GVHSRKLVEMIKTNSNANTSYIPTKEEVLVHLTAKVAPGDLV 439


>gi|213423828|ref|ZP_03356808.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E01-6750]
          Length = 141

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 15/105 (14%)

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL----- 412
             L     H  G+   V G     G         L   ++      V ++  +       
Sbjct: 13  KALQAARLHCAGKLWCVFG----CGGDRDKGKRPLMGAIAEEFADIVVVTDDNPRTEEPR 68

Query: 413 ----ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                +   +  +  V   E              D DVV++  K 
Sbjct: 69  AIINDILAGMLDAGQVRVMEGRAEAVTNAIMQAKDNDVVLIAGKG 113


>gi|322642363|gb|EFY38968.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
          Length = 453

 Score = 44.9 bits (104), Expect = 0.033,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|330813732|ref|YP_004357971.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327486827|gb|AEA81232.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 109/350 (31%), Gaps = 59/350 (16%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
             +K  IIAITG+ GK+T  ++L  A+    K          + G P          +  
Sbjct: 104 DTNKNKIIAITGTNGKSTFCKLLYHAIKGKDKN----TFLLGNYGKPALSYNSKSIKNIY 159

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           I EL    +      +  ++ H   +  I+P HL          + K +IF+ L   G  
Sbjct: 160 ILELSSYQI----EYSKFLKFHACAVLNISPDHLERHKTFSNYINIKLKIFDHLLPGGKG 215

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
           F+N + S+   ++ K +   +  I +                                  
Sbjct: 216 FVNENFSYNNRIQPKKNVRKVSNIKTSNIQNKF--------------------------- 248

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               +  +   ++ +   ++  L       IK+ + F P   R +  +   N    + I+
Sbjct: 249 ---LLKENFLPSVSIVFAVLKFLKISNKLIIKSFNSFVPLPHRQELIKKIKNI---SFIN 302

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S   ++     I     G           + + +    ID+    +   I  
Sbjct: 303 DSKATNFDSANFSLKHYQNIYWIAGG-----------LAKKNDKAKIDI---ATKKKIVG 348

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV 449
            +L G ++   K  L    +    +T+                    +++
Sbjct: 349 TYLIGKNISLFKQGLNMKENYLVCKTLPVAIHSAFKDAKRNNFKNSTILL 398


>gi|226327918|ref|ZP_03803436.1| hypothetical protein PROPEN_01799 [Proteus penneri ATCC 35198]
 gi|225203622|gb|EEG85976.1| hypothetical protein PROPEN_01799 [Proteus penneri ATCC 35198]
          Length = 432

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 84/288 (29%), Gaps = 29/288 (10%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H        E    +            +       
Sbjct: 149 GLGGRLDATNIVDADIAAITSIALDHTDWLGADREHIGHEKAGIFRANHYAVVGEPDMPH 208

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  + HA   +    +  +   +             W    +  +   +    I  
Sbjct: 209 SIAQVANEKHAKLFRRGTDWSFAIEGEH------------WHWRCVDCEFDALPIPNIPL 256

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +      V  AI   S+           R  +      +I +    NP
Sbjct: 257 ANAATAMGVICCLLRSDDKVSQAITEQSIVEGMSHAQLPGRFQVISQHPLVIFDV-AHNP 315

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            +       LSQ+    + +   V+G    +G+   +  +     L+     H +++   
Sbjct: 316 HAAGYLAEKLSQLPQKSDTQMRIVVGM---LGDKDIAGTLACLTPLA----DHWYVAPLN 368

Query: 408 ---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              G     L   L + +     ++++  +    S     D+VVV  S
Sbjct: 369 EFRGASAEVLAQHLDKPM---VFDSVENAWQQAISDAAPNDIVVVCGS 413


>gi|218551527|ref|YP_002385319.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|218359069|emb|CAQ91730.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia fergusonii ATCC 35469]
 gi|324112144|gb|EGC06122.1| L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Escherichia
           fergusonii B253]
 gi|325499791|gb|EGC97650.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia fergusonii
           ECD227]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 116/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M T      +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMTT--WILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|168821169|ref|ZP_02833169.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205342272|gb|EDZ29036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088843|emb|CBY98601.1| putative ligase [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGLGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|315080330|gb|EFT52306.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL078PA1]
          Length = 471

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 57/397 (14%), Positives = 119/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +  +LA M +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSSLAAMGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|302344213|ref|YP_003808742.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
 gi|301640826|gb|ADK86148.1| UDP-N-acetylmuramate/alanine ligase [Desulfarculus baarsii DSM
           2075]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 63/384 (16%), Positives = 120/384 (31%), Gaps = 32/384 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   VA+   L IPV         +  LA   RL+     +A+ G+ GKTT   ++   L
Sbjct: 77  DNPEVAAAIELQIPVI----PRAEM--LAELMRLKYG---VAVAGAHGKTTCTSLVATLL 127

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           ++       +      +G   T A +    +F + E   S         + + P + V+T
Sbjct: 128 AAGGLDPTVV--VGGKLGALGTNAVLGRG-EFLVAEADES-----DGSFNRLSPVVVVVT 179

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H+ ++   + +  A  E    +   G   +  DD     L  +        + ++
Sbjct: 180 NIDREHMDHYGSDQALDEAFVEFMNKVPFYGAAIICLDDPRVAALIPRVRK----RVITY 235

Query: 251 GKSKNADFQLRKW-KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           G+S  ADF+ R+   Q    S+           V     G H   N L  L +   L   
Sbjct: 236 GQSGQADFEAREVSHQGMRTSFSLFAQGQNLGRVQVPLPGRHNVLNTLAALAVAKELGVA 295

Query: 310 VDTAIKALSVFHPKEGRGKRYRC-------ALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  A+ A + F     R ++            +         +             ++  
Sbjct: 296 MPVAMSACAGFGGVGRRMEQKGQSAAGALVVDDYAHHPTEIRATLQAARDCWPDKRLVVC 355

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
             PH   R   +  +      ++    + L    +         +     A++       
Sbjct: 356 FQPHRYSRTRDLFEEFATAFYVADEL-LLLDIYAASEKKDPAVSAEKLAEAIRAH--GHR 412

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV 446
            V Y    +     ++  L   DV
Sbjct: 413 RVEYVGGQEAARERLEKMLGPDDV 436


>gi|289443663|ref|ZP_06433407.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
 gi|289416582|gb|EFD13822.1| UDP-N-acetylMuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T46]
          Length = 247

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 18/101 (17%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------L 414
            H + R   V G     G+        +  + +      V ++  +             L
Sbjct: 120 AHPDRRLAVVFGA---GGDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREIL 175

Query: 415 KDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVV--KS 451
             A          E            +    GDVV++  K 
Sbjct: 176 AGAAEVGGDAQVVEIADRRDAIRHAVAWARPGDVVLIAGKG 216


>gi|218547548|ref|YP_002381339.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|226711869|sp|B7LWF7|MURC_ESCF3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|218355089|emb|CAQ87696.1| UDP-N-acetylmuramate:L-alanine ligase [Escherichia fergusonii ATCC
           35469]
 gi|325496027|gb|EGC93886.1| UDP-N-acetylmuramate--L-alanine ligase [Escherichia fergusonii
           ECD227]
          Length = 491

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 65/401 (16%), Positives = 131/401 (32%), Gaps = 47/401 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           + D  ++AL  F     R              +    ++ + Y  +P  + A I      
Sbjct: 310 EDDVILRALESFQGTGRRFDFLGEFPLNPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHVL 412
            P        V+         ++  + D A VL+   +  + +            G    
Sbjct: 370 WPEKN----LVMLFQPHRFTRTRDLYDDFANVLTQ--VDTLLMLEVYPAGESPIPGADSR 423

Query: 413 ALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +L   +     +          +   +   L   D+++V+ 
Sbjct: 424 SLCRTIRGRGKIDPILVSDPAKVAEMLAPVLTGNDLILVQG 464


>gi|74314710|ref|YP_313129.1| putative ligase [Shigella sonnei Ss046]
 gi|73858187|gb|AAZ90894.1| putative ligase [Shigella sonnei Ss046]
 gi|323166720|gb|EFZ52478.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella sonnei 53G]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVASADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|315058287|gb|ADT72616.1| hypothetical protein CJS3_0881 [Campylobacter jejuni subsp. jejuni
           S3]
          Length = 313

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGA 65
              +LL AI    I         G +I+   +    AFF     + D    I  AV+KGA
Sbjct: 5   NLGELLNAI---LIHEGSVLSAEGFAINLNELKAGFAFF-----NND-KKEITQAVKKGA 55

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
             ++   D+   I    I  F V+++  AL +     
Sbjct: 56  YAIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|118469061|ref|YP_888503.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium smegmatis
           str. MC2 155]
 gi|166224705|sp|A0R015|MURC_MYCS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|118170348|gb|ABK71244.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium smegmatis str.
           MC2 155]
          Length = 482

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 70/405 (17%), Positives = 123/405 (30%), Gaps = 47/405 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           G   VV     +              IPV     V   L KL          T++     
Sbjct: 73  GPTAVVTTHAAIPKTNPELVEARKRGIPVILRPVV---LAKLMTGY-----TTLMVTGTH 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++     S       +G      G               + E   S    + 
Sbjct: 125 GKTTTTSMLIVALQHSGFDPSFAVGGELGEAGT----NAHHGSGTTFVAEADESDGSLLE 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      P++AV+T I   HL  F   +   +      E +   G + +  DD     L 
Sbjct: 181 YT-----PNVAVVTNIEADHLDFFGSEQAYTAVFDSFVERIAPGGALVVCTDDPGAAALA 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ--LQGKSMEVVHHGIGYHMAQ 294
            ++ ALGI+ +       N    L  W+Q    +   ++   +     V     G HMA 
Sbjct: 236 DRTDALGIRVLRYGSTGDNLAGTLLSWEQQGTGAVAHIRLAGEHNPRAVRLSVPGRHMAL 295

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  L     + A  D+ +  L+ F     R +    A        + + Y  +P  ++
Sbjct: 296 NALAALLAAREIGAPTDSVLDGLAGFEGVRRRFELVGTAAGAR----VFDDYAHHPTEVR 351

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-------- 406
           A +     +     G    V+     +   + +F  +     +L     V +        
Sbjct: 352 ATLEAARTVVDQNGG--RVVVAFQPHLYSRTATFAHEFG--AALSVADQVVVLDVYAARE 407

Query: 407 ---SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +G     + D +  +  V Y      +   + S    GDV++
Sbjct: 408 QPMAGVSGATVADHV--TAPVTYVPDFSAVAAHVASIARSGDVIL 450


>gi|333010253|gb|EGK29686.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri VA-6]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|332083234|gb|EGI88465.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella boydii 5216-82]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVSGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|330877132|gb|EGH11281.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964058|gb|EGH64318.1| UDP-N-acetylmuramate--L-alanine ligase [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 486

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 136/396 (34%), Gaps = 38/396 (9%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +   VA+     IPV         +  LA   R R     IA+ G+ GKTTT  +
Sbjct: 83  SAVNTSNPEVATALERRIPVV----PRAEM--LAELMRYRHG---IAVAGTHGKTTTTSL 133

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +    ++       +     +               + I E   S    +      ++P 
Sbjct: 134 IASVFAAGGLDPTFVIGGRLN---AAGTNAQLGTSRYLIAEADESDASFLH-----LQPL 185

Query: 186 IAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
           +AV+T I   H++ +     ++     E    L   G   +  DD     +      L  
Sbjct: 186 VAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILP----LVK 241

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT-LGIV 303
           +   ++G S++AD +    +Q    ++  V  + +    V   +  +      +  + I 
Sbjct: 242 RPTLTYGFSESADIRAINVRQDGMLTFFTVLRRDREPLDVSVNMPGNHNVLNSLATIAIA 301

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +      +  ++ LS F     R + Y     +G   ++ + Y  +P  + A IS +   
Sbjct: 302 TDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDYGHHPREVAAVISAVRGG 361

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLAL 414
            P        V+         ++  + D  +VL+  N+     V+ +G           L
Sbjct: 362 WPDR----RLVMVYQPHRFSRTRDLYDDFVQVLADANVLLLMEVYPAGEEPIPGADSRNL 417

Query: 415 KDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVV 448
             ++ +   +   Y E    L   ++  L  GD+++
Sbjct: 418 CHSIRQRGQLDPIYIERGVELAPLVKPLLRAGDILL 453


>gi|168262553|ref|ZP_02684526.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205348947|gb|EDZ35578.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 111/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G  +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGAKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|148926539|ref|ZP_01810221.1| hypothetical protein Cj8486_0856c [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845233|gb|EDK22327.1| hypothetical protein Cj8486_0856c [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 240

 Score = 44.5 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
             +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3   ISNLGELLNATLIHEGSVLSVEGFAINLNELKIGFAFF-----NND-KKEIAQAVKKGAY 56

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
            ++   D+   I    I  F V+++  AL +     
Sbjct: 57  TIITENDIT--IEDKDIFYFRVENLEQALVRFLRFF 90


>gi|313893665|ref|ZP_07827233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313441809|gb|EFR60233.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 94/319 (29%), Gaps = 39/319 (12%)

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L          RP  A++  I P HL+    +E   +AK  IFE   K+ 
Sbjct: 159 FLVAELSSYQL----ETIKHFRPIGAIMLNITPDHLARHKTMENYIAAKERIFENQLKSD 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            + LN DD     +             S     +    +      +      V+    + 
Sbjct: 215 YLVLNIDDPIVADM--------EHRAPSHILQISQKQTVENGAYYANGQCYVVKNGVATA 266

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    I    + N+   L ++++  A     ++   +     G   R          T 
Sbjct: 267 VIGDKDIHIPGSHNIENILTVIALTYALGVPVVEIHRIISEFHGVEHRLERVKTIDGITF 326

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S   N  S+  A+    +      G            G    +   +  +++     
Sbjct: 327 YNDSKATNVDSVVKALESFDKPVILLAG------------GHDKMTPLEEFMQLV-KVKT 373

Query: 402 SHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---- 452
             V   G      + A   +    ++ + +M             GD+V++    +S    
Sbjct: 374 KAVIFMGEAAERFEAAAKEAGVEPIYRALSMKDAVEQGYKLAESGDIVLLSPACASFDWY 433

Query: 453 -----NSCGFYRLINLLLE 466
                    F   + +L E
Sbjct: 434 SCFEERGDDFKACVQMLQE 452


>gi|154148328|ref|YP_001405805.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
 gi|153804337|gb|ABS51344.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter hominis ATCC BAA-381]
          Length = 429

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 54/435 (12%), Positives = 127/435 (29%), Gaps = 56/435 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ +S        F        D +  F   A++ GA ++ ++        + +I + G+
Sbjct: 10  ITDNSNECQNGAYF-----MQIDANMKFADSALKNGAKIISIDEAKKMLNINKNIKIVGI 64

Query: 89  DDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
               G     A              ++G+ G           ++  +     + + +   
Sbjct: 65  TGTNGKTTTAAAIYSTLLDLGFKCGLSGTRG---------AFINDCRIDEKGLTTSSVFK 115

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            +         D +F I E+  S     +     +   + + T +   HL     +EE A
Sbjct: 116 TIGYLYEASKEDCEFFIMEV--SSHAIAQNRIQGLNFALKIFTNLTQDHLDYHKTMEEYA 173

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K+  F+  +    I  +     +    A+++AL     YS              K   
Sbjct: 174 RVKSSFFK-DDTPKLINKDAGGITYNETNARTYALKQIATYSVL--------AYSVKGAI 224

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +        + +    +      +        + I  +   D     +AL+ F   EGR 
Sbjct: 225 DALLRTPDGEIQIESPLVGEFNLYNLMAAFAAVKI--LTNYDNKKIAEALANFGGVEGRV 282

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                 +++  + ++D ++  +             ++   +   IAV G     G     
Sbjct: 283 ----QIVSRNPYVVVDFAHTPDGIE--------KVLNALKDHELIAVFGA----GGDRDK 326

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQ 438
                   +  +      ++  +            ++  +     +   E          
Sbjct: 327 TKRPKMGAIVEHFAKTAIITSDNPRSEDPNVIIDEIESGMREKNKIIKIENRAEAIKKAI 386

Query: 439 SSLVDGDVVVV--KS 451
           S   +G++VV+  K 
Sbjct: 387 SLAKNGEMVVILGKG 401


>gi|296394963|ref|YP_003659847.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
 gi|296182110|gb|ADG99016.1| UDP-N-acetylmuramate/alanine ligase [Segniliparus rotundus DSM
           44985]
          Length = 475

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 134/418 (32%), Gaps = 44/418 (10%)

Query: 53  GHDFILHAVQ---KGAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAA 102
           GHD    A+     G   VVV+   +              +PV     VL AL +     
Sbjct: 55  GHD--ARALDFLDGGPTAVVVSQAAIPEDNPELVEARKRGVPVLYRPQVLAALME----- 107

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
                +T + ++G+ GKTTT  +   AL           S+     +             
Sbjct: 108 ----GSTRVLVSGTHGKTTTTSLTVAALQQAGLD----PSFAVGGELGEAGTNAHQGSGN 159

Query: 163 G-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E   S    +R+     +P  AV+T +   HL +F   E   +   +    +   G
Sbjct: 160 AFVAEADESDGSLLRY-----QPDAAVVTNVEADHLDHFGSSEAYVAVFDQFVRQIAPGG 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----QLRKWKQCSEQSW-MEVQL 276
           ++ ++ DD     L +++ A G + +        A      +L  W    E +    V  
Sbjct: 215 SLIVDVDDPGAAALGSRAAAAGTRVLGYGSNQAPAGVLLAARLADWSPHGEGARLTVVFE 274

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G          G HMA+N L  +       A +D AI  +S F     R +        
Sbjct: 275 PGGERVFSIGVPGRHMARNALGAVLAAVFAGASLDGAISGVSAFTGVRRRFQLKGAERGV 334

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEV 395
             F           A++  A ++++       GR + V    M     L  +      E 
Sbjct: 335 RVFDDYAHHPTEVAATLAGARALVTDPDGSCSGRLVVVFQPHMYSRTRLFATEFAAALEA 394

Query: 396 LSLYNISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                +  V+ +      G     + D + R++   +      +     S    GDVV
Sbjct: 395 ADEVLVLDVYGAREKPEAGITGALIADQV-RAVPARFVPMFSSVAQTAASLAKPGDVV 451


>gi|220906241|ref|YP_002481552.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7425]
 gi|254766047|sp|B8HW13|MURD_CYAP4 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|219862852|gb|ACL43191.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7425]
          Length = 453

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 106/350 (30%), Gaps = 35/350 (10%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA     +     + ITG+ GKTTT  ++     +             +IG  +    +
Sbjct: 98  ELAWRHLQQF--PWVGITGTNGKTTTTALVAAMFQTA----GLKAIACGNIGYSVCDLVL 151

Query: 157 PVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D+ I E+    L         + P IAV TT  P HL     +E     KA + +
Sbjct: 152 SEQAIDWVIAEISSYQL----ESLPRLAPKIAVWTTFTPDHLERHGTLECYRETKAVLLQ 207

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
             E          +     L+ +      +  ++    + A     +     E+ W++VQ
Sbjct: 208 QAEYKV------LNGDDPYLRQELSDRWPEVWWTSCNGRAALPHGIERGIYLEEGWVKVQ 261

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            Q           G+H  QN+L+ + +  +    V    +A++ F     R         
Sbjct: 262 EQPIVPVSSWKMPGHHNLQNLLLAVAVAHLGGIPVAAIAEAVNNFGGVPHR---LEPICT 318

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 I++S   N  + +  +  +           I + G   + G+  +         
Sbjct: 319 WSGIQFINDSKATNYDAAETGLVAV-------PAPVILIAGGQAKQGDDRRWL------E 365

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVD 443
           +     + V L G         L           ETM             
Sbjct: 366 MIQTKAAAVLLIGAAANLFAQRLQEVGYDRYEIVETMANAVPRAAELAKK 415


>gi|51599068|ref|YP_073256.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia garinii PBi]
 gi|59798192|sp|Q65ZV7|MURC_BORGA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51573639|gb|AAU07664.1| UDP-N-acetylmuramate--alanine ligase [Borrelia garinii PBi]
          Length = 468

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 61/382 (15%), Positives = 126/382 (32%), Gaps = 33/382 (8%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L+IP+    +V   L +L+           I I GS GKTTT   L I    +   
Sbjct: 92  EAKELNIPILSYSEV---LGELSRKHYS------IGIAGSHGKTTTTAFLGILFDKLGLN 142

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    D  I E        +        P++ ++T +   H
Sbjct: 143 PNVIVGSSVKD--FGDNSAIAGISDIFIVETCEYKKHFL-----YFSPNMLILTNVDYEH 195

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E +  A  +    L+K G + +N DD     +K++        I+SFG    +
Sbjct: 196 VDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSQI-NREDINIFSFGSRDLS 254

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVV-HHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
           +FQ+      +E                       + +  +L     +      +    +
Sbjct: 255 NFQISNIVVKNEYFCFSFLGLYNIELRTVLFHNILNFSAALLALNLFLESNGKSIFDFEE 314

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            +          KR    + +    +  + Y  +P  ++A +  +     +       +L
Sbjct: 315 VVKRVAKNYSGIKRRSELIKEKKGVIYMDDYAHHPREIRATLFGIKNFYKNK----RIIL 370

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR-SIHV 424
             M      ++ F  D  EVL++ ++  +                   L   + + + + 
Sbjct: 371 DFMPHTFTRTKEFFDDFVEVLNIADVLILHNIYLSNRENFNPDELSFKLFLNIKKINKNT 430

Query: 425 HYSETMDGLFLFIQSSLVDGDV 446
           ++ + +     FI+S L+ GD+
Sbjct: 431 YFFKDVKDSINFIKSLLISGDL 452


>gi|312136986|ref|YP_004004323.1| mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
 gi|311224705|gb|ADP77561.1| Mur ligase middle domain protein [Methanothermus fervidus DSM 2088]
          Length = 476

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 52/471 (11%), Positives = 120/471 (25%), Gaps = 31/471 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQEAFFAIKGPHYDGHDFILH---- 59
               +L   + G  IG   +  V GI  ++     P +              +I      
Sbjct: 1   MRLSELASYVSGKLIGEDKEIKV-GI-FNTLGDANPNDIVI---------RHWIDEKGVE 49

Query: 60  -AVQKGAGLVVVNTDM---VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATI--IAI 113
            A  K    ++        +     L +P+  V+ +  A                  + I
Sbjct: 50  IAKNKEVSALITQNPKGNSLEYAKKLKVPIILVNKIELASAFAIKWTIKNFAPNTYRVVI 109

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TG+ GK+TT  M+   L+   K         +     +      +  +    E     + 
Sbjct: 110 TGTNGKSTTTHMIYHILTHAGKKAFTNTDAKSEFNTLIDPMVAKLLAEKAKKENLEYLVI 169

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
           E+  +   +   +     +    ++    +    +          +      +      E
Sbjct: 170 EVSEVQGWLDRLMKDHAYLMTKSINPNVVVVTNVALDHIGLVNSIEEVFEETSGAVKALE 229

Query: 234 L---LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +    +    K      K+    F  +      +   + V       +        
Sbjct: 230 KGFAVLNYDNEFTRKMAKLTNKNVKVFFYGKNCPVTFKSGGIYVNNDLFIKKEELPFKSE 289

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID-ESYNAN 349
           +  QN L  +     L    D   K +  + P + R                + +     
Sbjct: 290 YFIQNTLAAISACLCLNIPPDIIKKGILTYKPLKRRFSILCKKPLIIDDFAHNPDGIKMA 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----- 404
             S K        +     G R  ++  +          +I+  EV+   +   V     
Sbjct: 350 IKSAKKLTKNKLWVVCAIRGSRGKIINKLNAESLSKTLKNIENYEVVITNSDDVVDNLNK 409

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                    LK     +I+  + + +        ++    D +++  +   
Sbjct: 410 VKKEEEKTFLKTLEKYNINYRFHKKLKTALEETLTNCKKDDTILLIGAQGM 460


>gi|15889380|ref|NP_355061.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
 gi|30316074|sp|Q8UDM6|MURD_AGRT5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|15157230|gb|AAK87846.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Agrobacterium
           tumefaciens str. C58]
          Length = 469

 Score = 44.5 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 111/378 (29%), Gaps = 42/378 (11%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L S  +
Sbjct: 82  PHWSVDLAKAAGVEVIGDIELFIRERRVHAPDCPFIAITGTNGKSTTTALIAHILQSSGR 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG  +     P    F + E     +     L   + P   ++  + P 
Sbjct: 142 D----TQLGGNIGTAVLSLDPPKAQRFYVVECSSYQID----LAPTINPTAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G         +   +       ++     +       S+ 
Sbjct: 194 HLDRHGTMQHYADVKERLVAGSGTAIVGVDDSHSTLIADRIERAGVKVERISKRNVVSEG 253

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
              +  +  +    +   +        +       + A  +   L +             
Sbjct: 254 LYAEGSQILRAHGGTSSLLVDLDGIQTLRGSHNAQNAAAAIAACLAVGVSEEEI------ 307

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             +      G   R +    +G  T +++S   N  +   A+S   +I     G   A  
Sbjct: 308 -RAGLKSFPGLKHRMQPVGRRGNVTFVNDSKATNADAAAPALSSFDRIYWIAGGLPKA-- 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           G +  +  L                I+  +L G         L  ++    S T+D    
Sbjct: 365 GGITSLSPLFPR-------------IAKAYLIGEAAAEFAATLGEAVPYEISGTLDKAVQ 411

Query: 436 FIQSSLVD----GDVVVV 449
              +        G+VV++
Sbjct: 412 HAAADAEKDATAGNVVML 429


>gi|325290584|ref|YP_004266765.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324965985|gb|ADY56764.1| FolC bifunctional protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 445

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 92/291 (31%), Gaps = 23/291 (7%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V P IAVIT+I   H+        IA         +++   +  + + +
Sbjct: 152 GLGGEIDSTNVVNPLIAVITSIGLDHMDYLGRT--IAEIARVKAGIIKEGVPVVTSAEKA 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +        +   G+  +   +         +S+     Q +   +    +G 
Sbjct: 210 EALAVLTEKARECQAELIRVGQDVSWQQRGP-------RSFDYQGRQWRIKGLKPALLGR 262

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N    L +  +L       I   +V    +      R  +      ++ +  +   
Sbjct: 263 HQFSNACAALAVCEVLRDRYGFGITKENVVQGLQSAEWPCRLEVFSAEPKIVLDGAHNAD 322

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
                  ++ S++       +  VL     +G L+       AE+L       V ++   
Sbjct: 323 GMTALRDALESELRDTVLAGKRLVLC----LGMLADKEREKAAEILFPLA-DQVIITKPD 377

Query: 411 V------LALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   +L+D   R I    V   E  +         L  GD+++V  S
Sbjct: 378 SPRAGNWRSLQDVAGRMIGPDKVRSIEDPEQAVREGLEMLAPGDMLLVTGS 428


>gi|291536441|emb|CBL09553.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis M50/1]
          Length = 454

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 79/275 (28%), Gaps = 22/275 (8%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P ++ I  I P HL     +E    AK  I +   K  T  LNY+D       
Sbjct: 171 ETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKESITKCQTKEDTCVLNYEDEILRKFA 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      +S  +       L++          E Q      E+   GI  +   N+
Sbjct: 231 E--TLKVNVLFFSSKRPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLGIHNYE--NV 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +   G    + A +D   + L  F   + R        +       ++S   NP +    
Sbjct: 287 MAASGTALCMGAPIDVVQRVLKEFWGVKHRI---EFVRDLQGVLYYNDSKATNPDAAIRG 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  +++ +    G            G           E      +  + L G     +  
Sbjct: 344 IGSMNRKTLLIGG------------GYDKNLEFDAWIESFD-GKVKCLLLIGQTKDKIAV 390

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    ++   +T++            G+ V++
Sbjct: 391 CARKHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|253681282|ref|ZP_04862080.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
 gi|253562520|gb|EES91971.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum D str.
           1873]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 127/346 (36%), Gaps = 29/346 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+    S       +   N  +           + D+ + E    
Sbjct: 114 IAISGTHGKTTTTSMLSHITLSANLDPTILVGGNLDVINGNVRVG---NSDYFVTEACEY 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++F      P+I +I  I   HL  +  I +I +   +  + + K G + +N DD 
Sbjct: 171 KASFLKFY-----PYIGIILNIEADHLDFYKDINDIQNTFLKFAKLIPKDGFLIVNADDE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +     I    + G+ +  + +    +   +      +   K   +  +  G 
Sbjct: 226 RCLDISKEVDCNIITFGINNGEVRAKNIEFNNGRPTFD----VYRNNTKLFSLTLNVPGN 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   + L ++     L  D ++ I+ LS F+    R +       +     + + Y  +P
Sbjct: 282 HNILDALASISASLSLKVDTNSIIEGLSTFYGAHRRFE----IKGKLNGITVVDDYAHHP 337

Query: 351 ASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +KAA++               PH   R I++  D  +    + +  +      +    
Sbjct: 338 TEIKAALNAAKNFPHNKIFCIFQPHTYSRTISLFEDFADSFFNADTLVLADI-YAAREKD 396

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + +  S      +++   + ++     + + +  F++  L +GD++
Sbjct: 397 TGIVNSDILGDKIRE---KGVNCKNLHSFEDITKFLRQELKEGDLL 439


>gi|330446841|ref|ZP_08310492.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491032|dbj|GAA04989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 446

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 112/348 (32%), Gaps = 38/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITGS GK+T   ++              G+          L  +     
Sbjct: 102 FAREVDKPVVAITGSNGKSTVTSLVGEMAKEAGIDVGVGGNIGF-----AALDMLAQQHQ 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    AV   ++  H+  +                 + + 
Sbjct: 157 LYVLELSSFQL----ETTSSLELTAAVYLNLSEDHMDRY------------PGGLAQYSQ 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                +D +   +      A           S   D Q         + W+ V  +    
Sbjct: 201 AKMRIFDHAKLAVFNRDDLATKPTQFSGAMTSFGFDEQAYGIVSVDGKEWLVVNGEAVMA 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +        D + +A+  +     R    + A+N+     
Sbjct: 261 VADIALVGRHNVANCLAALALADAAGVPRDASCRAMQHYTGLAHRC---QLAVNRHGVRW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N AS  AA++ L       EG+   ++G     G+   +   +L  VL+  N+
Sbjct: 318 VNDSKATNLASTLAALNGLQL-----EGKLHLLMG-----GDSKGAEFSELKPVLADLNV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G     L D +  +  V   ETM      +  ++  GD+V++
Sbjct: 368 -QLYSFGRD-RHLFDDVTNN--VISVETMSEAMEQVSRTVQSGDMVLL 411


>gi|148381111|ref|YP_001255652.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 3502]
 gi|153931511|ref|YP_001385485.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 19397]
 gi|153937356|ref|YP_001388891.1| FolC bifunctional protein [Clostridium botulinum A str. Hall]
 gi|148290595|emb|CAL84724.1| putative folylpolyglutamate synthase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927555|gb|ABS33055.1| FolC bifunctional protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933270|gb|ABS38769.1| FolC bifunctional protein [Clostridium botulinum A str. Hall]
          Length = 429

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 101/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLE 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   +         E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVITYPQKKEVEKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVAPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            DGD++++  S   
Sbjct: 407 EDGDMILICGSLYM 420


>gi|15834464|ref|NP_313237.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat
           e ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168760482|ref|ZP_02785489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217324395|ref|ZP_03440479.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|13364687|dbj|BAB38633.1| putative ligase [Escherichia coli O157:H7 str. Sakai]
 gi|189368906|gb|EDU87322.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. EC4501]
 gi|217320616|gb|EEC29040.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli O157:H7 str. TW14588]
 gi|326346707|gb|EGD70441.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli O157:H7
           str. 1044]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|257465567|ref|ZP_05629938.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
 gi|257451227|gb|EEV25270.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus minor 202]
          Length = 454

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 90/321 (28%), Gaps = 31/321 (9%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  +   H   F  ++ I      +   
Sbjct: 153 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNLEFDHADIFDDLKAIQRQFHHLVRT 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    DD   +             + S+ + +        + +         ++
Sbjct: 213 MPSQGCILSAADDQNVQDTLK---------MGSYSELQFIGEGKAWFAKPLSADCSHFEV 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                +          + NM   L  ++           A    +      +R       
Sbjct: 264 YHHGNKAGEVKWNIIGSHNMHNALMAIAAAHHAGVEVAGACQALNRFINANRRLEIKGEV 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AIS          G+   +L  + E    +        ++A
Sbjct: 324 NGITVYDDFAHH-----PTAISATINALRGKVGKDQRILA-VLEPRSNTMKMGVHKEEIA 377

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+      V+      ++V  + +AL +     +S  +D L   I       D ++V 
Sbjct: 378 PSLTDAEAVFVYQPETIPWNVSVITEALSQ--PAKWSANIDELVEMIAEEAKPTDHILV- 434

Query: 451 SSNSCGF----YRLINLLLEE 467
            SN   F     ++I  L  +
Sbjct: 435 MSNG-AFGGIHNKIIAKLQNK 454


>gi|119487890|ref|ZP_01621387.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
 gi|119455466|gb|EAW36604.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lyngbya sp.
           PCC 8106]
          Length = 458

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 137/416 (32%), Gaps = 51/416 (12%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
           LVVV+  +   I  L I        +  + ++ +A R  +    + ITG+ GKTTT  ++
Sbjct: 66  LVVVSPGVPWDIPPLEIARHR---GIEIVGEMELAWRNLNAVPWVGITGTNGKTTTTALI 122

Query: 127 TIALSSI---KKTYACIGSYNNHIGVPLTLAR---MPVDVDFGIFELGMSHLGEIRFLTH 180
                +          IG+    + +     R   +   VD+ I E+    +      + 
Sbjct: 123 AAIFKAAGLNAPACGNIGNAACELALEQQEIRALKIGKSVDWVIAEVSSYQI----ESSS 178

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
            + P I V TT  P HL+    +E   + KA++ +  E          +     L+  + 
Sbjct: 179 TLAPKIGVWTTFTPDHLNRHHTLENYYNIKAKLLKNSEIQV------INGDDPYLRQNAD 232

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  ++  + K+            E  ++    Q          +G H  QN+LM +
Sbjct: 233 QEWKNACWTSVQGKSKLIGNPDLGVYIENDYIIQNQQKIIPLKTLKMVGKHNLQNLLMAV 292

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +   +     +A+S F        R     +      I++S   N  + +  ++ +
Sbjct: 293 ATARLAGIEPPAIEQAISNFPGV---PHRLEAVGSWQDINWINDSKATNYDAAQVGLAAV 349

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
                  E   I + G   + G+ +Q     + E  +      V L G         L +
Sbjct: 350 -------EAPVILIAGGEAKAGDDTQWL-QTIQEKAAA-----VLLIGDAAEQFSQRLKQ 396

Query: 421 SIH--VHYSETMDGLFLFIQSSLV--DGDVVVV---KSS---------NSCGFYRL 460
             +  V   ETM+                VV++    +S             F +L
Sbjct: 397 VNYQTVEIVETMEKAIPKAAELASHFSAKVVLLSPACASFDQYESFEHRGDHFRQL 452


>gi|113969769|ref|YP_733562.1| FolC bifunctional protein [Shewanella sp. MR-4]
 gi|113884453|gb|ABI38505.1| FolC bifunctional protein [Shewanella sp. MR-4]
          Length = 432

 Score = 44.5 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
            AA  ++ Q++P   G+R+  L  M +           +  V+S   I   +L       
Sbjct: 316 HAARFLVKQLTPMVTGKRVFALCGMLK-----DKDIAGVLPVVSPL-IDTWYLVSLQGER 369

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G +   L+  L +    H  + +   +  +++ +   DVV+V  S
Sbjct: 370 GANASLLRQTLAQDTKAHEFDDIASAWTALKAQIQPDDVVIVFGS 414


>gi|324112496|gb|EGC06473.1| UDP-N-acetylmuramate-alanine ligase [Escherichia fergusonii B253]
          Length = 491

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 61/400 (15%), Positives = 125/400 (31%), Gaps = 45/400 (11%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT  M++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAIAGTHGKTTTTAMVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPMVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H+  +    E +          L   G   +  DD     L  +      + I +
Sbjct: 194 NIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRV----GRQITT 249

Query: 250 FGKSKNADFQLRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +G S++AD ++  ++Q   +  +  ++   + + V  +  G H A N    + + +    
Sbjct: 250 YGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPLRVTLNAPGRHNALNAAAAVAVATEEGI 309

Query: 309 DVDTAIKALSVFH---------------PKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           + D  ++AL  F                P   +        + G      ++      + 
Sbjct: 310 EDDVILRALESFQGTGRRFDFLGEFPLNPVNSKSGTAMLVDDYGHHPTEVDATIKAARAG 369

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
               +++    PH   R   +  D   +     +  +          I      G    +
Sbjct: 370 WPEKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGESPI-----PGADSRS 424

Query: 414 LKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           L   +     +          +   +   L   D+++V+ 
Sbjct: 425 LCRTIRGRGKIDPILVSDPAKVAEMLAPVLTGNDLILVQG 464


>gi|260551695|ref|ZP_05825769.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter sp. RUH2624]
 gi|260405438|gb|EEW98932.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter sp. RUH2624]
          Length = 356

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   FRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGD 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            ++  A    AG  +V   +   +         VD+   A   L      +  +  I  T
Sbjct: 48  KYLEQAKASRAGAFIVTATLKEYLPEKD-NFIIVDNPYLAFAILTHVFDKKLTSKGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|196232685|ref|ZP_03131536.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Chthoniobacter flavus Ellin428]
 gi|196223145|gb|EDY17664.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Chthoniobacter flavus Ellin428]
          Length = 349

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 17/123 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEA-FFAIKGPHYDGH-DFILHAV 61
           +T  ++   + G  +     +  V+G++  S    P E  FF        G+  +I    
Sbjct: 3   FTVQEIAALVGGRLVSNSGLETKVHGVASLS-EAEPGEITFF--------GNAKYITQLK 53

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAITGSVGK 119
              A  V+V  D   +I +L+     V++   A  +L              +  T  +GK
Sbjct: 54  TTRATAVLVPADFAETISALA---ICVENPSLAFAQLLQKFAPEPIRFLPGVHPTAVLGK 110

Query: 120 TTT 122
              
Sbjct: 111 NVV 113


>gi|315639117|ref|ZP_07894284.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
 gi|315480821|gb|EFU71458.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Campylobacter upsaliensis JV21]
          Length = 428

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 57/450 (12%), Positives = 122/450 (27%), Gaps = 88/450 (19%)

Query: 30  ISIDSRSIAPQEAFF-AIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           I+ +S        F    +   +        AV+KGA                   +  V
Sbjct: 10  ITDNSSECEKDCFFLSCFQNAKFK-----DEAVKKGAK------------------IIDV 46

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI- 147
           ++    L              II ITG+ GKTTT   +   L  +       G+    I 
Sbjct: 47  EETKKLLGI-------DETIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFIN 99

Query: 148 ----------------GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                            +           +F + E+  S    ++     +     + T 
Sbjct: 100 DEKIDEKSLTTSPILKTLEYLQKATLKGCEFFVMEV--SSHALVQNRIEGLEFAAKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           +   HL      E    AK   F                      A      +K  Y++G
Sbjct: 158 LTQDHLDFHGSFENYKKAKESFFTDESLKFINK-----------DAFHINFNVKNAYTYG 206

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVD 311
               A +Q++ +   +E   + +               +++   +  +  +  ++  ++ 
Sbjct: 207 IENPAFYQVKAYALENEIDALVLAKNQSFHIHSSLLGLFNLYNLLAASACVNELVKPNLA 266

Query: 312 TAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
              +A+S F    GR              ++D ++  +             +        
Sbjct: 267 DLERAISGFGGVCGR------VEKIVEGVIVDFAHTPDGIE--------KVLDSLKNKNL 312

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--------HVLALKDALPRSIH 423
           I V G     G+  +S    + ++++ Y  + +  S           +  +         
Sbjct: 313 IVVFGA---GGDRDKSKRALMGKMVAHYAKNAIITSDNPRSEDARSIMQEILQGFEDKNT 369

Query: 424 VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
               E  +           + D+V++  K 
Sbjct: 370 PLMIENRELAIYKALELKKEDDLVIILGKG 399


>gi|258654049|ref|YP_003203205.1| UDP-N-acetylmuramate--L-alanine ligase [Nakamurella multipartita
           DSM 44233]
 gi|258557274|gb|ACV80216.1| UDP-N-acetylmuramate/alanine ligase [Nakamurella multipartita DSM
           44233]
          Length = 482

 Score = 44.5 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 74/413 (17%), Positives = 125/413 (30%), Gaps = 45/413 (10%)

Query: 53  GHDFIL-HAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLR 105
           GHD      +  G   VVV+T +      +       I V    D L AL          
Sbjct: 67  GHDSANLSLIPGGPTAVVVSTAVRPDNPEVVAARAAGIAVVRRADALAAL---------M 117

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           +    + + G+ GKT+T  MLT+AL       +              L       D  + 
Sbjct: 118 TDRRSVCVAGTHGKTSTTSMLTVALQHAGLDPSFAIGGEL---TGSGLGAHHGQGDVFVA 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S             PH A++T I P HL +    E   +   +  E +E  G + +
Sbjct: 175 EADES-----DGSFLSFSPHGAIVTNIEPDHLDHHGTAEAYTAVFDQFIERIEPGGFLVI 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD     L A+     + T      +             +    +     G ++ +  
Sbjct: 230 CADDPGSAALAARVRLRRLVTYGRAADAVVRLAVDPASDPAT-GEPVVTLADGTAVPLRL 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G HM  N +  L     L  D D     L+ +     R +    A        + + 
Sbjct: 289 TVPGDHMLLNAVAALAAGVELGVDADLLAAGLAGYTGVRRRFELKGVAGG----VTVYDD 344

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A ++    + P        V+     +   + +F  +     +L     V 
Sbjct: 345 YAHHPTEVAAQLAAARGVVPADGR---LVVVFQPHLYSRTATFATEFG--AALGTADLVV 399

Query: 406 LS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +            G     +  A+P    V Y         F+   +  GD+V
Sbjct: 400 VLDIYGAREDPRPGVTGELITAAVPAGPDVRYHPERSTAARFVAEIVRAGDLV 452


>gi|254448639|ref|ZP_05062098.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
 gi|198261828|gb|EDY86114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [gamma proteobacterium HTCC5015]
          Length = 450

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 61/405 (15%), Positives = 119/405 (29%), Gaps = 44/405 (10%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V   + + I   S P +  +++L              +  ++ + G+ GKTTT  ML  
Sbjct: 77  IVEALLNSGIPYTSGPQWLAENLL-------------HQRWVLGVAGTHGKTTTSAMLA- 122

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHI 186
               ++      G     +      +    D DF + E                  RP  
Sbjct: 123 --WVLECAGMAPGFLIGGVPENFGCSARLGDTDFFVIEADEYDTAFFDKRSKFVHYRPRT 180

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           A++  +   H   F  +  I      +   +   G +    +    + +        ++ 
Sbjct: 181 AILNNLEYDHADIFPDLAAIQRQFHHLMRCIPGQGRVISPANSEPLDDVLKMGCWSEVER 240

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
           +      + +      +  C +             E   H     +A    + +      
Sbjct: 241 VGGDWTIEQSAADFSAFDVCFQGQSQGRLEWSLIGEHNAHNAVAAIAAARHVGVLPAQA- 299

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
                  I+AL+ F   + R +          +    + +  +P ++K  +  L   +  
Sbjct: 300 -------IEALAAFKNVKRRMELRGEVAGIKVY----DDFAHHPTAIKTTVEGLR--AQV 346

Query: 367 GEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           G+GR +AVL    E    S     H            +        V    +       V
Sbjct: 347 GDGRIVAVL----EPRSNSMRMGAHKAAVLPALAAADAVWLHLPKEVEWSLE----GEGV 398

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                +D L   I  +L  GD V+V  SN   F  +   LL+   
Sbjct: 399 RVQRDLDILPQQIAETLQSGDTVLV-MSNGS-FGNIHQRLLDCLK 441


>gi|256832307|ref|YP_003161034.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
 gi|256685838|gb|ACV08731.1| UDP-N-acetylmuramate/alanine ligase [Jonesia denitrificans DSM
           20603]
          Length = 492

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 105/375 (28%), Gaps = 33/375 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            AL  L            IA+ G+ GKTTT  M+ +A  ++    +              
Sbjct: 102 QALAMLMNDHDG------IAVAGAHGKTTTSGMIAVAAQALGMDPSFAVGSTMRTPNGAI 155

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                      I E   S    + +     RP I+V+T I P HL ++   +    A  E
Sbjct: 156 PGGHLGHGKILIAEADESDGSFLNY-----RPTISVVTNIEPDHLDHYGSEDAFYRAFDE 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             + +   G +    DD+    L  +    G +   ++G+  +AD ++ +          
Sbjct: 211 FADQVVPHGWLIACADDAGAYALAHRQEQHGRQV-LTYGRHPSADIRVLESHPQHPGISQ 269

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT----------AIKALSVFHP 322
            + +                 +N   TL I   +  + +            +   S    
Sbjct: 270 VMTVTVPRNLPRTGTRNTTNPENATTTLTIQLAVPGEHNALNAAAALATVMVLGASPQEA 329

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC-EM 381
                             ++ +    +  +           +         VL      +
Sbjct: 330 AHALSAFMGTGRRFELRAVVGDVTVVDDYAHHPTEVAAFLSAASNVAGTGRVLALFQPHL 389

Query: 382 GELSQSFHIDLAEVLSLYNISHVW---------LSGFHVLALKDALPRSIHVHYSETMDG 432
              +++F  + A  L   +++ V           +G     + D L       Y      
Sbjct: 390 YSRTRTFANEFATALQGADVAIVTDIYGAREQPAAGVTSQLITDNLAPQ-QGAYIGDRIQ 448

Query: 433 LFLFIQSSLVDGDVV 447
               +      GD++
Sbjct: 449 AAKHLARIAQPGDLI 463


>gi|229139234|ref|ZP_04267809.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
 gi|270000495|ref|YP_003329007.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|217065749|gb|ACJ79999.1| UDP-N-acetylmuramyl-tripeptide synthetase [Bacillus cereus AH187]
 gi|228644293|gb|EEL00550.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Bacillus cereus BDRD-ST26]
          Length = 252

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 68/216 (31%), Gaps = 24/216 (11%)

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           ++G    AD Q +      +     V      +EV  + +G     N L  + +  +   
Sbjct: 21  TYGIHNGADVQAKNITLRPKGIRFLVSSFNGEIEVNLNLVGRFNVYNALAAITVAMVEGI 80

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +     +LS     EGR +      +         + +A         +VLS IS   +
Sbjct: 81  PLTNICDSLSNLKSIEGRMEIIDENQDFLVIVDYAHTPDA-------LENVLSTISEFSK 133

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH---------VLALKDAL- 418
           G+ I V G     G    +    +   ++      V+++  +         +  ++    
Sbjct: 134 GKVITVFG----CGGDRDAKKRSIMGGIAGSYSDFVFITSDNPRSEDPQAIMKDIEKGFL 189

Query: 419 -PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
              +++       +       +     D+V++  K 
Sbjct: 190 QNNNLNYKVEVDRELAINHAINMASSNDIVLIAGKG 225


>gi|84496501|ref|ZP_00995355.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
 gi|84383269|gb|EAP99150.1| cyanophycin synthetase [Janibacter sp. HTCC2649]
          Length = 972

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 64/424 (15%), Positives = 124/424 (29%), Gaps = 58/424 (13%)

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             ++  P F    V+  L      +R      I+A+TG+ GKTTT  M+   +  + +  
Sbjct: 473 HPTVGEPQFIAKPVVDLLFAPGSPSR----VPIVAVTGTNGKTTTSRMIAHIMKGVGRKV 528

Query: 138 ACIGS----------YNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
               +          +      P +   +  +       + ++  G +R      R  +A
Sbjct: 529 GMTSTDGIVVDERLVFKADASGPKSARMVLQNPRVDFAVMEVARGGILREGLGYDRNDVA 588

Query: 188 VITTIAPAHLSNFS--GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           V+T +AP HL       +E++A  KA I E + + G   LN DD     ++ +    G  
Sbjct: 589 VVTNVAPDHLGLRGINTVEQLADVKAVIVEAVPRNGFAVLNADDPLVRKMRKRC--SGSI 646

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
             ++     +A  +            + ++   K   +V       M       L     
Sbjct: 647 VWFTMSPPGSAVREFVDDHCRRGGRAIVLEPSDKGDMIVIRHGRRAMQLAWTHLLPATFG 706

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            TA  + A    +           +        F+      +    +     ++   +  
Sbjct: 707 GTAMFNVANAMAAAGAAFAVGTGLHEIRQGLRTFS-TSYYLSPGRMNQVNVNNIDVIVDY 765

Query: 366 HGEGRRIAVLGDMCEM-----------------------GELSQSFHIDLAEVLSLYNIS 402
                 + VLGD  E                        G+       +L  + + +   
Sbjct: 766 CHNAPGMKVLGDFVERYADAKAGSSELGKISRLAVIATAGDRRDEDMRELGSIAAHHFDV 825

Query: 403 HVW-------------LSGFHVLALKDALPRSIHVHYSETMDG---LFLFIQSSLVDGDV 446
            V               +G      K A+         E +         + +    GD+
Sbjct: 826 MVVREDERLRGRKPGETAGLVAEGAKAAMADGARCRQVEVVTEELSAVRHVMARANPGDI 885

Query: 447 VVVK 450
           VVV 
Sbjct: 886 VVVC 889


>gi|99080524|ref|YP_612678.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
 gi|122984382|sp|Q1GIV0|MURC_SILST RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|99036804|gb|ABF63416.1| UDP-N-acetylmuramate--L-alanine ligase [Ruegeria sp. TM1040]
          Length = 469

 Score = 44.5 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 71/396 (17%), Positives = 130/396 (32%), Gaps = 31/396 (7%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           A +VV+++ +      L         V+     LA   RL+S    IAI G+ GKTTT  
Sbjct: 71  AEVVVISSAIKPGNAELDEARLRGLPVVRRAEMLAELMRLKSN---IAIGGTHGKTTTTT 127

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
           M+   + +           N  I             ++ + E   S         + +  
Sbjct: 128 MMAELMVA---GGFDPTVVNGGIIHAYGSNARMGQGEWMVVEADES-----DGTFNRLPA 179

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            IAV+T I P H+ ++   + +     E    L   G      D +  + L  +      
Sbjct: 180 TIAVVTNIDPEHMEHWGDFDRLRDGFYEFVSNLPFYGLAVCCTDHAEVQALVGRITDR-- 237

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
             + ++G +  AD +          +  ++ LQ +  ++    +      N+   L  V+
Sbjct: 238 -RVVTYGFNAQADVRAVNLTYKGGVAHFDILLQAEGQKIEGCTLPMPGDHNVSNALSAVA 296

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +         +  +      G  +R+         T+ID+  +          +    I 
Sbjct: 297 VCRHLGMKREEIRTALAAFGGVNRRFTKVGEVDGVTIIDDYGHHPVEIAAVLKAARQAIG 356

Query: 365 PHGEGRRIAV-----LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV------LA 413
             GEGR IAV        +  + +   +   D      +  I+ V+ +G           
Sbjct: 357 TEGEGRVIAVHQPHRYSRLSNLFDDFCACFND----ADVVAIAEVFAAGEDPIEGASRDD 412

Query: 414 LKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           L   L R  H H       D L   ++     GD+V
Sbjct: 413 LVAGLIRHGHRHARAILNEDDLLRLVREQTRPGDMV 448


>gi|297161285|gb|ADI10997.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           bingchenggensis BCW-1]
          Length = 479

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 63/388 (16%), Positives = 117/388 (30%), Gaps = 39/388 (10%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           ++ +  +     +PV+G  DV     +LA   R       +A+TG+ GKTTT  ML   L
Sbjct: 86  SSPLFLAAAEAGVPVWG--DV-----ELAWRLRGADAPPWLAVTGTNGKTTTVRMLAAIL 138

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            +         +   +IGV L    +  +  D    EL    L         +R H   +
Sbjct: 139 EAAGLR----TAAVGNIGVSLLDVVLGDEPYDVLAVELSSYQLHWA----PSLRAHSGAV 190

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
             +AP HL     +   A+ K  I+EG +      +    +   +  A          ++
Sbjct: 191 LNLAPDHLDWHGSMAAYAADKGRIYEGNQVACVYNVADPATEDLVRAADVEEGCRAIGFT 250

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
            G    +   + +     +++++  + +          +      N+   L   ++  A 
Sbjct: 251 LGTPGPSQLGVVENILV-DRAFVANRQKQAQELAEVSDVNPPAPHNIANALAAAALARAF 309

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
                              R     +      +D+S   N  + +A++     I     G
Sbjct: 310 GVPPTAVRDGLRAFRPDPHRVEHVADVAGVAYVDDSKATNTHAAQASLDSFEHIVWIAGG 369

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET 429
                       G            V S   +  V L G     + +AL R         
Sbjct: 370 ---------LAKGATFDEL-----VVASAKRLRGVVLIGADRALIGEALARHAADVPVVD 415

Query: 430 MD--------GLFLFIQSSLVDGDVVVV 449
           +D                    GD V++
Sbjct: 416 LDRTDTGAMAAAVREAARLARPGDTVLL 443


>gi|291615173|ref|YP_003525330.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
 gi|291585285|gb|ADE12943.1| UDP-N-acetylmuramate/alanine ligase [Sideroxydans lithotrophicus
           ES-1]
          Length = 486

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 76/440 (17%), Positives = 133/440 (30%), Gaps = 55/440 (12%)

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLR 105
            GHD   + +   A  VVV+T + A    +       IP+         +  LA   RLR
Sbjct: 55  HGHD-ANNLLD--ADAVVVSTAVKADNPEMMAAREQHIPIV----PRAVM--LAELMRLR 105

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
                IA+ G+ GKTTT  ++T  L+        +     +            +   G  
Sbjct: 106 QG---IAVAGTHGKTTTTSLVTSVLAKGGYDPTFVIGGRLN--------SSGANARLGTG 154

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIF 224
           E  ++   E       + P +AV+T I   H+  +            +  E L   G   
Sbjct: 155 EFIVAEADESDASFLYLTPILAVVTNIDADHMETYGHDFGKLKQAFVDFVERLPFYGRAI 214

Query: 225 LNYDDSFFELLKAKSHAL------GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           L  DD     +  +                     ++   ++R   QC        + + 
Sbjct: 215 LCADDENVRDILPRISKPITTYGLSEDVQIRAVDVRHEGGRMRFTAQCRHDEKCLFEGKP 274

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY-RCALNQG 337
             +EV  +  G H   N L  + +   +       + AL+ F     R +RY    L   
Sbjct: 275 IDLEVTLNLAGMHNVLNALAAIAVGLEVGVAPSAIVAALAEFEGVGRRMQRYGEIPLPNP 334

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM-CEMGELSQSFHI------ 390
                + +  A        I          +    AV G    +   L+   H       
Sbjct: 335 LPQAGEGANAAAAGGSFTLIDDYGHHPVEMKATLAAVRGAFPGKRLLLAFQPHRFTRTRD 394

Query: 391 ------DLAEVLSLYNISHVWLSGFHVLALKDA--------LPRSIHVHYSETMDGLFLF 436
                  +   +    ++ V+ +G   +   D         +       + E +  +   
Sbjct: 395 LFEDFVKVLGGVDALALAEVYAAGEQPIVAADGRALMHALRVAGQNEAVFVENIADMPQT 454

Query: 437 IQSSLVDGDVVVVKSSNSCG 456
           I     DGDVV+   + S G
Sbjct: 455 IMQMAQDGDVVLTMGAGSIG 474


>gi|207859563|ref|YP_002246214.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711366|emb|CAR35744.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|161617695|ref|YP_001591660.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161367059|gb|ABX70827.1| hypothetical protein SPAB_05558 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|114777864|ref|ZP_01452795.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551855|gb|EAU54395.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Mariprofundus
           ferrooxydans PV-1]
          Length = 455

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 107/334 (32%), Gaps = 28/334 (8%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV- 160
                   IIA+TG+ GKTTT  +++  L ++            +IG P+       DV 
Sbjct: 100 FGEHFHGDIIAVTGTNGKTTTVSLISTMLDTLPG----GIEAGGNIGKPMLELIADGDVP 155

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +  + EL    L         + P  AV+  + P H      ++   +AK  +F    + 
Sbjct: 156 ERVVLELSSFQLERAE----PIHPRWAVLLNVQPDHADMHVDMQAYRAAKLRLFARQGEG 211

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF-QLRKWKQCSEQSWMEVQLQGK 279
               L  D  + +L             +  G +++ D       +   E  W        
Sbjct: 212 DKATLPGDAEWDDLAAELRGRGAYVRRFGVGSAESLDCGVQMTEQGAWELFWHHFDTVYT 271

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N+ +     +          ++L+ F   + R    +        
Sbjct: 272 IDASQLQTRGRHQHLNLAVAGQAAADFGLSPAVIRQSLTSFRGLQHR---LQSLGEVQGR 328

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
              ++S   NP + +AA+    Q+     G R  +  D+ E+ +                
Sbjct: 329 QWFNDSKATNPDAARAALESFEQVIWVCGGLRKGL--DVSELKD------------AVAA 374

Query: 400 NISHVWLSGFHVLALKDALP-RSIHVHYSETMDG 432
           +++ + ++G    A  +      +      +++ 
Sbjct: 375 HVALMLVTGSDTTAFIELARLAGVKAQTVGSIEQ 408


>gi|119944588|ref|YP_942268.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
 gi|119863192|gb|ABM02669.1| UDP-N-acetylmuramate [Psychromonas ingrahamii 37]
          Length = 452

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 121/416 (29%), Gaps = 46/416 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I +A+ +G     V   +   I  +S P + ++ VL                 ++A+ G+
Sbjct: 67  IGNAMSRGNPC--VEAVLDKQIPYISGPQWLLEHVLK-------------DRWVLAVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKT+T  ML      ++      G     +     L+    +  F + E     S   +
Sbjct: 112 HGKTSTASMLA---WILEYANMKPGFLIGGVPENFGLSARLGETPFFVIEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P   V+  +   H   F  +  I      +   +  TG IF+   D     
Sbjct: 169 KRSKFVHYHPRTLVLNNLEFDHADIFEDLNAIKKQFHHLVRTVPATGRIFIPDQDQALID 228

Query: 235 LKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           ++       ++        K    D  +       ++             V +       
Sbjct: 229 VQRMGCWSEVEYLGKNWSCKKIKEDASIFDVYLNQQKQGQVAWSLMGDHNVNNALAAIAA 288

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A+++ +T  I     A+     + + V             A +         +     A 
Sbjct: 289 ARHVGVTPEIAIEALAEFKNIKRRMEVKGKVNSITVYDDFAHHPT-------AIKTTLAG 341

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-FHV 411
           ++A +     I+          LG            H +      L     V+      +
Sbjct: 342 LRAKVGNEKIIAVLEPRSNTMKLG-----------VHKEALVNA-LAAADSVYCFETEDI 389

Query: 412 LALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
               + L   +   V  S  +D L   + S       +++  SN  GF  + N LL
Sbjct: 390 KWSIEELFAEQGKAVDISHDIDELCTKLVSIAERNAHILI-MSNG-GFGNIHNKLL 443


>gi|331671380|ref|ZP_08372178.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
 gi|331071225|gb|EGI42582.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli TA280]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF---- 457
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPSHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFAGIH 442

Query: 458 YRLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|307250719|ref|ZP_07532654.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857257|gb|EFM89378.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 439

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 91/320 (28%), Gaps = 27/320 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFTKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI+          G+   +L  + E    +        ++A
Sbjct: 310 NGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 363

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+  N   V+      + V  + D L +     +S  +D L   I       D ++V 
Sbjct: 364 PSLADANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV- 420

Query: 451 SSNSCGFYRLINLLLEEFPA 470
            SN   F  +   LL+   A
Sbjct: 421 MSNG-AFGGIHQKLLQALKA 439


>gi|71898202|ref|ZP_00680376.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731941|gb|EAO33998.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Ann-1]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 121/404 (29%), Gaps = 49/404 (12%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV++ +      L       IP+        A+  LA   R R     IA+ G+ GKT
Sbjct: 77  CVVVSSAIREDNPELMEARSQRIPIM----PRAAM--LAELMRFRHG---IAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   LS        +        +            + + E   S          
Sbjct: 128 TTTSLIAAVLSEGGLDPTFVIGGQL---LAAGANAKLGAGQWLVVEADES-----DGSFL 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P +AV+T I   HL N+            E  + L   G   L  DD     L  K 
Sbjct: 180 RLNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELVGK- 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLM 298
                + + ++G    AD +     Q   +    + L   K + V     G H   N L 
Sbjct: 239 ---ARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357
              +   L    +   +AL  F     R        +  G    + + Y  +        
Sbjct: 296 ASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLIDDYGHH------PR 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
            + +  +    G     L    +    S++     A    L ++  + LS          
Sbjct: 350 ELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALVLSEVYPAGEVPI 409

Query: 408 -GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
            G    AL  A+             +  L   +   L +GD+++
Sbjct: 410 PGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLL 453


>gi|15837400|ref|NP_298088.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa 9a5c]
 gi|23821887|sp|Q9PF80|MURC_XYLFA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|9105694|gb|AAF83608.1|AE003919_19 UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa 9a5c]
          Length = 477

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 121/404 (29%), Gaps = 49/404 (12%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV++ +      L       IP+        A+  LA   R R     IA+ G+ GKT
Sbjct: 77  CVVVSSAIREDNPELMEARSQRIPIM----PRAAM--LAELMRFRHG---IAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   LS        +        +            + + E   S          
Sbjct: 128 TTTSLIAAVLSEGGLDPTFVIGGQL---LAAGANAKLGAGQWLVVEADES-----DGSFL 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P +AV+T I   HL N+            E  + L   G   L  DD     L  K 
Sbjct: 180 RLNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELAGK- 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLM 298
                + + ++G    AD +     Q   +    + L   K + V     G H   N L 
Sbjct: 239 ---ARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357
              +   L    +   +AL  F     R        +  G    + + Y  +        
Sbjct: 296 ASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLIDDYGHH------PR 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
            + +  +    G     L    +    S++     A    L ++  + LS          
Sbjct: 350 ELEAVFAAVRGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALVLSEVYPAGEVPI 409

Query: 408 -GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
            G    AL  A+             +  L   +   L +GD+++
Sbjct: 410 PGADAKALARAIRARGRSEPVVVGQVASLIEVLPDVLQEGDLLL 453


>gi|121611477|ref|YP_999284.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
 gi|121556117|gb|ABM60266.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verminephrobacter
           eiseniae EF01-2]
          Length = 638

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 68/381 (17%), Positives = 109/381 (28%), Gaps = 51/381 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            T++AITG+ GKTT   +    L    ++ A  G+    + +      +       ++ L
Sbjct: 229 PTVLAITGTNGKTTVTALTGQLLQRAGRSVALAGNIGPTL-LDTLAGHIDAGTLPAVWVL 287

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S        +    P  A +  I+  HL     +   A+AKA IF           + 
Sbjct: 288 ELSSF--QLERSTGFEPTAAALLNISQDHLDWHGDMAAYAAAKARIFGQTALMVLNRQDA 345

Query: 228 --------------DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-- 271
                                  AK+ A   +   +FG    A       +      W  
Sbjct: 346 AVMQVSAPSAPSAPVTPALRPRAAKAPAPQPRADITFGADMPARAGDFGIELVGGMPWLV 405

Query: 272 -----------------------MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
                                   E+Q+Q           G H A N L  L +      
Sbjct: 406 RASAADETQRARRRPGPPGAVPAQELQIQRLIPADALRIRGRHNAVNALAALALACAAGC 465

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
            +   +  L  +        R             D+S   N  +  AAI  L      G 
Sbjct: 466 PLAPMLYGLRAYRG---EPHRVESVACIDGVEFFDDSKGTNVGATVAAIDGLGAQGGPGA 522

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYS 427
           GRR+ V+      G+        LA          V L G     ++ AL    + +  +
Sbjct: 523 GRRLVVIVGGQGKGQDFAPLAAPLARHARA-----VLLIGCDAPLIRAALQDIGVPLLDA 577

Query: 428 ETMDGLFLFIQSSLVDGDVVV 448
            T+ G           GD V+
Sbjct: 578 PTLPGAVELAAQHAQPGDAVL 598


>gi|119897173|ref|YP_932386.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Azoarcus sp.
           BH72]
 gi|119669586|emb|CAL93499.1| probable UDP-N-acetylmuramoylalanine-D-glutamate ligase [Azoarcus
           sp. BH72]
          Length = 472

 Score = 44.5 bits (103), Expect = 0.041,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHY 426
            GR + + G   +  + S          +   +   V L G     ++ A+    + + +
Sbjct: 363 GGRVVLIAGGDGKGQDFSP------LAPVLTRHARAVVLIGRDAKLIEAAVAGCGVPLEH 416

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
           +  +D   L   +    GD V++
Sbjct: 417 AADLDTAVLRANALARPGDAVML 439


>gi|320457842|dbj|BAJ68463.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 493

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 118/369 (31%), Gaps = 41/369 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 108 RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 167

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 168 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--H 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 222 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEP 281

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGK 328
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P       
Sbjct: 282 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 341

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +  G    +D+S   N  +        + +S       I + G + +        
Sbjct: 342 VAEAVVEGGSVRFVDDSKATNGHA------ARASLSSFPAKSVIWIAGGLAKGSRFEDLV 395

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQS 439
                     + I    + G     + +A       I V   +       MD       +
Sbjct: 396 KDQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGT 449

Query: 440 SLVDGDVVV 448
               GD+V+
Sbjct: 450 YAAAGDIVL 458


>gi|320177642|gb|EFW52632.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella boydii ATCC 9905]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDLFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|241668958|ref|ZP_04756536.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877490|ref|ZP_05250200.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843511|gb|EET21925.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 70/413 (16%), Positives = 128/413 (30%), Gaps = 51/413 (12%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           +   +   +   S P +   ++L                 +IAI G+ GKTTT  M    
Sbjct: 80  IEKILAEKLNYFSGPQWLYQNILKY-------------KKVIAIAGTHGKTTTTTMTIKI 126

Query: 130 LSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT--HLVRPHI 186
           L          +G  ++  GV         D ++ + E            +      P I
Sbjct: 127 LEQAGLNPSFLVGGVSSDFGVSSR----YTDSEYFVIEADEYDTAFFDKRSKLIHYDPSI 182

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            VI  I   H   F  I+ I     ++   +  T  I  N  D   + + +      +  
Sbjct: 183 FVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIYNDKDENVQKIISMGCWSELVR 242

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
             S              K      +    + G ++E+    IG H A N +    +   L
Sbjct: 243 ANSSNGISITKHTADYSK------FELCDINGNTIEISWSLIGEHNALNAMSAYAVAKQL 296

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
               +    AL  F   + R       L+      + + +  +P S+K  +     +   
Sbjct: 297 NISDEVINAALESFKGVKRRL----EVLSHQDNVTLYDDFAHHPTSIKLTLEA---VRNK 349

Query: 367 GEGRRIAVLGDMC----EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPR 420
            +   +  L D        G+   +  + + E         V L    +L    K+ L  
Sbjct: 350 AKDAYVIALIDPRSNTMRQGDNKDNLPMSIIE------ADRVLLYNHSLLKWDAKEVLKN 403

Query: 421 SIHVHYSETMDGLFLFIQSSLVD--GDVV-VVKSSNSC--GF-YRLINLLLEE 467
           S +V +  ++D     +   L       + +V  SN    G   +L+ LL  +
Sbjct: 404 SNNVDFIVSVDDFVDCVDELLTKYRDRNIQLVMMSNGSFDGLREKLVKLLETK 456


>gi|110639121|ref|YP_679330.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
 gi|122966617|sp|Q11RH6|MURC_CYTH3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|110281802|gb|ABG59988.1| UDP-N-acetylmuramate--L-alanine ligase [Cytophaga hutchinsonii ATCC
           33406]
          Length = 466

 Score = 44.5 bits (103), Expect = 0.042,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 128/411 (31%), Gaps = 48/411 (11%)

Query: 57  ILHAV-QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           +  A  +K + LV+    + A    L+   F  ++      +  V   L  +   I I G
Sbjct: 63  VPEAFTKKDSVLVIYTPAIPADHLELN---FFRENGYALYKRSQVLGFLTKELKTIGIAG 119

Query: 116 SVGKTTTKEMLTIALSSIKKTYACI-GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           + GKTTT  M    +       +   G    +    + +        + + E       E
Sbjct: 120 THGKTTTSSMAAHIMHESGMPCSAFLGGITQNYNTNILIGNHGDGAGWVVAEAD-----E 174

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P IAVI  + P HL  +S ++    +  E  + L+  G +    D      
Sbjct: 175 YDRSFLQLSPDIAVINNMDPDHLDIYSDVQSFYDSFNEYLKKLKPGGIVIRRVDVDV--- 231

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMA 293
                         +FG+S  AD++++         ++       +   +     G H  
Sbjct: 232 ----QIPSHASLSVTFGESVEADYRIQNVVVEDGGVTFSIDHDFTRWNNIRIEMPGMHNV 287

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N              +D+   +L  F   + R +            +  + Y  +P  +
Sbjct: 288 MNATAAFLAAHFAGVSIDSIKASLRSFGGVKRRFEYIYKNTK----LVYVDDYAHHPTEL 343

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
           +A +  +  + P  +     V      +   ++ F  + A+ L+L     + L       
Sbjct: 344 EALLKAVRMVFPGKK----VVTVFQPHLFSRTRDFMQEFAQSLALT--DELLLMEIYPAR 397

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS-------LVDGDV 446
                G     L + +P +       + + L   ++            GD+
Sbjct: 398 ELPIEGITSDVLLNLIPSTNKKVV--SKESLLTELEKLNFDVVITAGAGDI 446


>gi|269956082|ref|YP_003325871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269304763|gb|ACZ30313.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 488

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 62/362 (17%), Positives = 104/362 (28%), Gaps = 39/362 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  +A+TG+ GKTTT EML   LS+             ++G PL  A +  D+D    E
Sbjct: 116 PAPWLAVTGTNGKTTTVEMLASILSAAGLR----TRAVGNVGTPLIEAALDPDLDVLAVE 171

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L     +          I  +A  HL     +    + K  I+E  E+       
Sbjct: 172 LSSFQLHFAHTVAVQA----GAILNLAEDHLDWHGTMAAYGADKGRIYERAERACVYNAA 227

Query: 227 YDDSFFELLKAKSHALGIKTIYSFG----------KSKNADFQLRKWKQCSEQSWMEVQL 276
              +  E+ +A          ++ G          +    D          ++     +L
Sbjct: 228 DGATEHEVREADVADGARAVGFTLGAPAPGMLGVVEDVLVDRAFHAPADAVDRLTYAAEL 287

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              +        G      +   L   ++  A    A             G R +     
Sbjct: 288 GTLADLEHLAPGGSLPPHVVANALAAAALARAHGVPAAAVRDGLRAFTPGGHRIQQVAAL 347

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T +++S   N  S        + ++    G  + V G + + G        D A+ L
Sbjct: 348 DGVTYVNDSKATNAHS------AAASLAGFPAGSVVWVAGGLAK-GARFDELVEDRADRL 400

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSET---------MDGLFLFIQSSLVDGDVV 447
                    + G        AL R                  M       +S    GD V
Sbjct: 401 RAA-----VVIGVDPGPFTAALGRHAPDVPVVVVDPGDTGTVMRRAVAAARSLAQPGDTV 455

Query: 448 VV 449
           ++
Sbjct: 456 LL 457


>gi|168244085|ref|ZP_02669017.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194445921|ref|YP_002043673.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194449308|ref|YP_002048459.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194404584|gb|ACF64806.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194407612|gb|ACF67831.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205337012|gb|EDZ23776.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 457

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|45644750|gb|AAS73138.1| predicted UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 311

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 21/152 (13%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISI----DSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           +   +L + I G  IG      V+ +S     +S S+     F      +     +I   
Sbjct: 7   FKLEELAKLINGKVIG-DSNAVVDNLSTIQNANSSSVT----FL----SNA---KYIDLL 54

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
               A  VVV+   +             +D   A  +L+   +  S+  I  I  S   T
Sbjct: 55  NNSKASAVVVD---INFKEDNRFNYIKCNDPYIAYAQLSKIFKHDSEIKIPCIHKSA--T 109

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
            +K+        I        +   H GV + 
Sbjct: 110 VSKDAEVHKDVYIGPNVFIGPNCKVHSGVEIH 141


>gi|282854257|ref|ZP_06263594.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|282583710|gb|EFB89090.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J139]
 gi|314923244|gb|EFS87075.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL001PA1]
 gi|314967011|gb|EFT11110.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA2]
 gi|314980967|gb|EFT25061.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA3]
 gi|315091698|gb|EFT63674.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA4]
 gi|315093068|gb|EFT65044.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL060PA1]
 gi|327327831|gb|EGE69607.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL103PA1]
          Length = 471

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 110/393 (27%), Gaps = 25/393 (6%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYNANPASMKA 355
            S+L       +  ++ F     R +      +           T +  +  A   ++  
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVADVSVFDDYAHHPTELRATLGAARRAVTG 360

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
              V++   PH   R     G   E G         +   +       +   G     + 
Sbjct: 361 QGRVIACFQPHLFSRTRDFAG---EFGSALTLADRVIVSDIYPAREDPI--PGVTGEMVH 415

Query: 416 DA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           DA L       Y      L   +   +  GD+V
Sbjct: 416 DAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|240144189|ref|ZP_04742790.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
 gi|257203793|gb|EEV02078.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Roseburia
           intestinalis L1-82]
          Length = 454

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 79/275 (28%), Gaps = 22/275 (8%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P ++ I  I P HL     +E    AK  I +   K  T  LNY+D       
Sbjct: 171 ETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKEGITKCQTKEDTCVLNYEDEILRKFA 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      +S  +       L++          E Q      E+   GI  +   N+
Sbjct: 231 E--TLKVNVLFFSSKRPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLGIHNYE--NV 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +   G    + A +D   + L  F   + R        +       ++S   NP +    
Sbjct: 287 MAASGTALCMGAPIDVVQRVLKEFWGVKHRI---EFVRDLHGVLYYNDSKATNPDAAIRG 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  +++ +    G            G           E      +  + L G     +  
Sbjct: 344 IGSMNRKTLLIGG------------GYDKNLEFDAWIESFD-GKVKCLLLIGQTKDKIAV 390

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    ++   +T++            G+ V++
Sbjct: 391 CARKHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|168698125|ref|ZP_02730402.1| UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Gemmata obscuriglobus UQM 2246]
          Length = 342

 Score = 44.5 bits (103), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 24/110 (21%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-----A 60
           T   L + ++G  +G  P+  +      S    P +              F+       A
Sbjct: 4   TVRQLAEWVRGEVLG-DPELAITNARTLS-EAEPGDI------------TFVESERNLHA 49

Query: 61  VQK-GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
                A   VV     AS+     PV  V D L A   +    R R   T
Sbjct: 50  WHNSRASAAVV----PASVPVNGRPVIRVADPLMAFADIVRHLRARPDET 95


>gi|213691748|ref|YP_002322334.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|254766039|sp|B7GQ76|MURD_BIFLI RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|213523209|gb|ACJ51956.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 15697]
          Length = 481

 Score = 44.5 bits (103), Expect = 0.044,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 118/369 (31%), Gaps = 41/369 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--H 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEP 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KEGRGK 328
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P       
Sbjct: 270 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +  G    +D+S   N  +        + +S       I + G + +        
Sbjct: 330 VAEAVVEGGSVRFVDDSKATNGHA------ARASLSSFPAKSVIWIAGGLAKGSRFEDLV 383

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQS 439
                     + I    + G     + +A       I V   +       MD       +
Sbjct: 384 KDQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGT 437

Query: 440 SLVDGDVVV 448
               GD+V+
Sbjct: 438 YAAAGDIVL 446


>gi|319782849|ref|YP_004142325.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168737|gb|ADV12275.1| UDP-N-acetylmuramate/alanine ligase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 74/414 (17%), Positives = 127/414 (30%), Gaps = 38/414 (9%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GH     A   G A +VVV+T +  S   L      +  ++     LA   R R     +
Sbjct: 58  GHR----AENLGDAEVVVVSTAIKKSNPELKAAREKLLPIVRRAEMLAELMRFRQA---V 110

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+   L +       I     +            D ++ + E   S 
Sbjct: 111 AIGGTHGKTTTTSMVATLLDAGGLDPTVINGGIIN---AYGTNARMGDGEWMVVEADES- 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   IAV+T I P HL ++   +++  A  +  E +   G   +  D   
Sbjct: 167 ----DGTFLKLPAEIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYGFGVMCTDHPE 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------V 284
            + L ++        + ++G++  AD +    +     S  +V ++ +            
Sbjct: 223 VQALVSRIEDR---RVITYGENAQADVRFTNHRMSGAISEFDVVIRDRKTGGQTVIAGLR 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + +   L    +   K LS F   + R            F     
Sbjct: 280 LPMPGRHNVSNATAAIAVAHELGLSAEAIKKGLSSFAGVKRRFTHTGSWDGVEIFDDYGH 339

Query: 345 -----SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
                S     A       V++   PH   R   +  +       + +  +         
Sbjct: 340 HPVEISAVLKAARSATQGRVIAIAQPHRFTRLHDLFNEFSTCFNDADTVMVAPVYAAGEE 399

Query: 400 NISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            I      G    AL   +    H    Y E    +   ++     GD VV   
Sbjct: 400 PID-----GVSSDALVSRIRAGGHRDARYIEGPAAIAPIVRDLAKPGDFVVFLG 448


>gi|203284490|ref|YP_002222230.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
 gi|201083933|gb|ACH93524.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia duttonii
           Ly]
          Length = 451

 Score = 44.1 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 109/351 (31%), Gaps = 32/351 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L +        G+       PL        +   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLYRVLVASYPNVKLGGNIGIS---PLNFLDELDGISPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        + P I++IT +   H + +S  ++    KA+IF              
Sbjct: 169 S----WQLHDIKSLSPMISIITNVYCDHQNYYSNFDDYIEDKAKIFINQNSG-------- 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                +L  +  A            K   F         E  +     +    +     +
Sbjct: 217 -----ILIVQDQAYCNYFSRFKHNLKIVLFSEIMPVDFKEDIFYFKDGKVYLNDGEIGVL 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  ++  +  V +          +  +    +G   R             +++ + 
Sbjct: 272 NESKIVLLISKMITVFVANYLHLNLNISSEIVSIFDGIEHRLEFVKEFNGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   +I     +  HGE   +   G   E+       + ++ + +  +  + + L G
Sbjct: 332 IPDSTVFSIKS---LKVHGESIHLITGGTDKEL-------NFEIFDDILSFVKTWILLQG 381

Query: 409 FHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVVK-SSNSCGF 457
              + + + L  R+++     ++     + +   +  D+V+   +S S   
Sbjct: 382 SATVKIIEFLKSRNVNYFIFSSLKECVCYAKEVAMINDIVLFSPASASFEL 432


>gi|291538690|emb|CBL11801.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseburia
           intestinalis XB6B4]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 79/275 (28%), Gaps = 22/275 (8%)

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
                  P ++ I  I P HL     +E    AK  I +   K  T  LNY+D       
Sbjct: 171 ETMETFHPSVSAILNITPDHLDRHHTMEAYIRAKEGITKCQTKEDTCVLNYEDEILRKFA 230

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
                      +S  +       L++          E Q      E+   GI  +   N+
Sbjct: 231 E--TLKVNVLFFSSKRPLEEGIYLQENTIWIAGKETERQRLIDVGELKLLGIHNYE--NV 286

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +   G    + A +D   + L  F   + R        +       ++S   NP +    
Sbjct: 287 MAASGTALCMGAPIDVVQRVLKEFWGVKHRI---EFVRDLQGVLYYNDSKATNPDAAIRG 343

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           I  +++ +    G            G           E      +  + L G     +  
Sbjct: 344 IGSMNRKTLLIGG------------GYDKNLEFDAWIESFD-GKVKCLLLIGQTKDKIAV 390

Query: 417 ALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +    ++   +T++            G+ V++
Sbjct: 391 CARKHGFENIVCCDTLNEAVNICYRLAKPGEAVLL 425


>gi|226357454|ref|YP_002787193.1| cyanophycin synthetase [Deinococcus deserti VCD115]
 gi|226319444|gb|ACO47439.1| putative cyanophycin synthetase [Deinococcus deserti VCD115]
          Length = 886

 Score = 44.1 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 118/384 (30%), Gaps = 48/384 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIK----------KTYACIGSYNNHIGVPLTLARMP 157
             II+ITG+ GK+TT  M+   +                             P +   + 
Sbjct: 478 MPIISITGTNGKSTTARMVAHIMRHAGKVTGLTTSNGIYVDGEQILTGDTTGPKSAKVIL 537

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN--FSGIEEIASAKAEIFE 215
            D +  +  L  +  G +R      R  +  +  I P HL       +E++A  K+ I E
Sbjct: 538 SDRNVEVAVLETARGGILREGLGFDRCDVGAVLNIQPDHLGVKGIDTVEDLAWVKSLIVE 597

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLR-------------- 261
            +  +GT  LN DD     ++ ++           G +     +                
Sbjct: 598 VVTDSGTSVLNADDPLTWAMRHQARGRLALFSMQGGPTAPEHLRAHIADGGLALVREGTV 657

Query: 262 --KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                   E       ++ + +     G      QN L    +      ++     ALS 
Sbjct: 658 VGDELVLYEDGQRTPLMRARDIPATLGGFAKVNIQNALAAAAMAVAQHIELPVIRAALSS 717

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F     +        +   F ++ + Y  NP+ ++    +++ + P        V+G + 
Sbjct: 718 FSTSFEQSPGRLNLYDGHPFRVLLD-YAHNPSGLEYLGDLVAHLRPARGR----VIGVLG 772

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKD-ALPRSIHVHYSE 428
             G+   +    + E+ +      + +          +G     + + AL          
Sbjct: 773 VAGDRRDADMRQMGELAARA-FDELIIREDDLRRGRPAGEGARHVAEGALASGFPAERLH 831

Query: 429 TM---DGLFLFIQSSLVDGDVVVV 449
           T+           S    GD+VV+
Sbjct: 832 TILPEPEAVSAALSMARQGDLVVI 855


>gi|160937437|ref|ZP_02084798.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439506|gb|EDP17256.1| hypothetical protein CLOBOL_02328 [Clostridium bolteae ATCC
           BAA-613]
          Length = 472

 Score = 44.1 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 66/382 (17%), Positives = 118/382 (30%), Gaps = 43/382 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L    +       IAI+G+ GKTTT  MLT  L +                    
Sbjct: 114 ELLGELMRNYKEA-----IAISGTHGKTTTTSMLTDILLAGDLDPTISVGGILKD----- 163

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +  ++  G  +L ++   E         P + VI  +   HL  F  IE+I  +   
Sbjct: 164 ---IGGNIRVGGPDLFVTEACEYTNSFLSFYPTMEVILNVEEDHLDFFKDIEDIRHSFRL 220

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ--CSEQS 270
             E L   G + +N      E +           + +FGK  ++ +  R       +  S
Sbjct: 221 FAEKLPAKGLLVVNSGIEKVEEI----TRGLRCRVVTFGKDLSSTYTARNITYDGFARPS 276

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +  V        +     G H   N L  + I   L    D  +  L  F   + R ++ 
Sbjct: 277 YDLVVQGETVTRITLGVTGEHNVYNSLAAIAIALELGVGFDAIMSGLGRFTGTDRRFEKK 336

Query: 331 RCALNQGFFTLIDESYNANPASM---------KAAISVLSQISPHGEGRRIAVLGDMCEM 381
                      + + Y  +P  +              +     PH   R  A L    E 
Sbjct: 337 GEVAG----VTVIDDYAHHPQEIKATLAAARNYPHRKLWCVFQPHTYTRTRAFLDQFAEA 392

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
              +    +         +       G     + D + +     HY  + D +  FI  +
Sbjct: 393 LSAADEVVLADIYAARETD-----TLGVSSRDVADRIEKLGTKAHYIPSFDEIETFILEN 447

Query: 441 LVDGDVVVVKSSNSCGFYRLIN 462
            ++GD +++      G   ++ 
Sbjct: 448 CMNGD-LLIT----MGAGDIVK 464


>gi|206561801|ref|YP_002232566.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           cenocepacia J2315]
 gi|198037843|emb|CAR53787.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           cenocepacia J2315]
          Length = 495

 Score = 44.1 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 72/298 (24%), Gaps = 14/298 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           P  A I  I   HL      +  A AK  IF      
Sbjct: 168 DVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDWHGSFDAYAQAKGRIFGATTTR 223

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQG 278
                +     F  +   + A    T      +++ D+            ++        
Sbjct: 224 VLNRDDAAVMKFAPVAGAADAPRTVTFGLNEPTQDGDYGLSRDNGIAWLVEAVDRDAPDE 283

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +          H        L     L                           L    
Sbjct: 284 ATTTRRRKRDAAHTPDIAQKRLMPADALRIRGLHNAANALAAFALARAIDLPAAPLLHAL 343

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDL 392
                E++     +    +  +        G  +A L  + +       G+        L
Sbjct: 344 REYRGEAHRVEVIATIDDVDYVDDSKGTNVGATVAALDGLAQKIVLIAGGDGKGQDFAPL 403

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ +    V L G    A++D L    + +    T++G           GD V++
Sbjct: 404 VAPVARW-CRAVMLIGRDAPAIRDTLAETGVPLVDHATLEGAVHAAADLAEPGDAVLL 460


>gi|307264124|ref|ZP_07545719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306870540|gb|EFN02289.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 90/320 (28%), Gaps = 27/320 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFTKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI+          G+   +L  + E    +        ++A
Sbjct: 310 KGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 363

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+  N   V+      + V  + D L +     +S  +D L   I       D ++V 
Sbjct: 364 PSLADANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV- 420

Query: 451 SSNSCGFYRLINLLLEEFPA 470
            SN   F  +   LL+   A
Sbjct: 421 MSNG-AFGGIHQKLLQALKA 439


>gi|238757553|ref|ZP_04618738.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
 gi|238704315|gb|EEP96847.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia aldovae ATCC 35236]
          Length = 461

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 62/366 (16%), Positives = 114/366 (31%), Gaps = 34/366 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           ++A+ G+ GKTTT  MLT  L +       +       GVP          +  F + E 
Sbjct: 105 VLAVAGTHGKTTTAGMLTWILEACGYEPGFVIG-----GVPGNFDVSARLGNSPFFVIEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I +
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIV 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             +D+  + + A       + +   G                   +          EV  
Sbjct: 220 PDNDNPLKQVMAMGCWSEQELVGETGSWFAR------KVAVDASVFEVFLDNELVGEVSW 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N LM +     +      A +A           +R      +     + + 
Sbjct: 274 SLVGEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINARRRLELRGEAHGVTVYDD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A ++ L      G  R +AVL    +  ++G         L          
Sbjct: 330 FAHHPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------AD 382

Query: 403 HVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
            V+L          ++ A       H+S  +D L   I  + + GD ++V  SN  GF  
Sbjct: 383 EVFLFQPQHIPWQVVEVAEACIQPAHWSADIDTLVDMITKTALPGDHILV-MSNG-GFGG 440

Query: 460 LINLLL 465
           + + LL
Sbjct: 441 IHDKLL 446


>gi|116512399|ref|YP_809615.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris SK11]
 gi|122940065|sp|Q02XX9|MURD_LACLS RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|116108053|gb|ABJ73193.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 449

 Score = 44.1 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  I       RP IA+IT +  AHL      E   +AK  I E +  
Sbjct: 161 TDTLVMELSSFQLMGID----TFRPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTA 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN++      L  K+ A  +              + +       +  +  + +  
Sbjct: 217 DDFLILNFNQEKCRKLADKTKATVLA----------FSTKEKVSGAYVNEGKIYFKDEFI 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  +    +  A+ +  I+ L+ F   + R    +        
Sbjct: 267 MEASELSLPGDHNLENALAAIVASKLRGAENEAIIEVLTSFAGVKHRL---QYLGEIDGR 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S   N  + + A+S             + +L    + G   +    DL       
Sbjct: 324 KVYNDSKATNILATQKALSGFDNSK-------LWLLAGGLDRGNGFEDLEKDL------E 370

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G     L+    + +I V  S+ +      I      GD +++
Sbjct: 371 DLKGMVVFGQTADKLRLMAEKLNIPVFASQNVATALKEIMPQTQVGDTILL 421


>gi|332673838|gb|AEE70655.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 335

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++   +   S G   +    + D+  +LN L           ++ +  S
Sbjct: 59  GILYAREYPLSDG--DVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|330945257|gb|EGH46915.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 110

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 6/82 (7%)

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
           +G  + + G   +  + S              +     L G     +  AL  ++ +   
Sbjct: 7   DGELVLIAGGDGKGADFSG------LRAPVARHCRAAVLLGRDAELIAQALGDAVPLVRV 60

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           +T+           + GD V++
Sbjct: 61  DTVQAAVEHSAKLALRGDAVLL 82


>gi|261342895|ref|ZP_05970753.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
 gi|288314798|gb|EFC53736.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Enterobacter cancerogenus ATCC 35316]
          Length = 459

 Score = 44.1 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 114/367 (31%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D     LK              G+  +   + R         W  +    K  EV    
Sbjct: 222 NDIN---LKQTMAMGCWSEQELVGEQGHWQAKKRNADASE---WDVLLDGEKVGEVKWGL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A KA           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVVPADAAKA----LGTFINARRRLELRGEAHGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A ++ L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGICKDDLAPSLGR------ADEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L         V  + DA  +    H+S  +D L   +  +   GD ++V  SN  GF  
Sbjct: 385 FLLQPQHIPWQVAEVADACIQ--PAHWSADVDVLADMVVKAAQPGDHILV-MSNG-GFGG 440

Query: 460 LINLLLE 466
           +   LL+
Sbjct: 441 IHQKLLD 447


>gi|94676482|ref|YP_588948.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|166222957|sp|Q1LSW6|MURC_BAUCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|94219632|gb|ABF13791.1| UDP-N-acetylmuramate--alanine ligase [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 490

 Score = 44.1 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 71/416 (17%), Positives = 142/416 (34%), Gaps = 47/416 (11%)

Query: 65  AGLVVVNT------DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A +VVV++        + +   L IP+         +  LA   R R     IAI G+ G
Sbjct: 79  ANVVVVSSAISIANPEIVAAKKLRIPII----TRAEM--LAELMRFRYG---IAIAGTHG 129

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ML             +             AR+     + I E   S L  +   
Sbjct: 130 KTTTTAMLASIYLEAGLDPTIVNGGLIKSI--GQYARLGYGS-YLIAEADESDLSFLH-- 184

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              ++P + +IT I   H+ N+ G           F         +        + +   
Sbjct: 185 ---LQPIVTIITNIEADHMENYQGDFNYLKNTFLKFIHKLPF---YGKGIMCLDDPVIRD 238

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNML 297
                 + I ++G +  A+F+L  + Q     S+   +    ++ +  +  G H A N +
Sbjct: 239 LLPHISRHIITYGFNSKANFRLTNYHQKEAHVSFQLYRQDKPTLRIELNSPGRHNALNAV 298

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLIDESYNANPAS 352
             + + +         ++AL  F     R         +    +    ++ E Y  +P  
Sbjct: 299 AAIAVATEEGIADKNILQALFRFKGINRRFDKLGCFSLKKINGKNGVVMLVEDYGHHPTE 358

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF 409
           ++A I  +    P        V+         ++  +     VLS  ++     ++ +G 
Sbjct: 359 LQATIQSVRIGWPDK----RLVMVFQPHRYTRTRDLYEYFVGVLSKVDVLLMLDIYPAGE 414

Query: 410 HVLALKDALPRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
           + +A  D+      +         +   ++ L + +   L D D+V+++ + S G 
Sbjct: 415 NPIAGIDSKSLCCTIRNTSKLDPIFIHELNKLPVMLAQLLQDNDLVLMQGAGSIGL 470


>gi|329895281|ref|ZP_08270923.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
 gi|328922403|gb|EGG29746.1| UDP-N-acetylmuramate--alanine ligase [gamma proteobacterium
           IMCC3088]
          Length = 479

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 67/393 (17%), Positives = 135/393 (34%), Gaps = 37/393 (9%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
           V  D V    +    +  V     A   LA   R R     IA+ G+ GKTTT  M+   
Sbjct: 85  VAPDNVEYQAARDARIPTVP---RA-QMLAELMRYRHG---IAVAGTHGKTTTTSMIASV 137

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
            ++       +     +               + I E   S    +        P ++V+
Sbjct: 138 FAAAGLDPTYVIGGRVNQSGSNAKLGASH---YLIAEADESDASFLHLT-----PMVSVV 189

Query: 190 TTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           T I   H+  +   ++++     E    L   G+  L  DD   + L  + +      I 
Sbjct: 190 TNIEADHMDTYGGDLQQLRKTFIEFLHNLPFYGSAVLCLDDPEIKALIPQINRS----IL 245

Query: 249 SFGKSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
           ++G+  +AD+ +R  K     S  +        + +  +  G H   N   T  +     
Sbjct: 246 TYGQDPDADYCIRSIKAAGAASDFQLQTPNHGVLALRVNSPGLHNVLNAAATAAVALDEG 305

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
             +      L+ F     R ++     +     ++ + Y  +P  ++A ++  +Q+ P  
Sbjct: 306 LPIAAVQDGLANFAGVGRRFEQLGRLQHARGQAVLVDDYGHHPTEVEATLNSAAQVWPES 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS---HVWLSGF------HVLALKDAL 418
                 V+         ++  + D   VLS  ++     V+ +G          +L  ++
Sbjct: 366 ----RVVMVYQPHRFTRTRDLYDDFVRVLSRCDVLILLDVYAAGEAEIPGADSKSLARSI 421

Query: 419 PRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
            +   V   Y+  +D +   + S L   D V++
Sbjct: 422 RQRGLVDPIYAAGIDEVPELLASILAADD-VLI 453


>gi|296454434|ref|YP_003661577.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
 gi|296183865|gb|ADH00747.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JDM301]
          Length = 481

 Score = 44.1 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 117/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGEP 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 270 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 330 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 385 DQ------AHTIKAAVIIGKDQQPMVEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 438

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 439 AAAGDIVL 446


>gi|255279944|ref|ZP_05344499.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
 gi|255269717|gb|EET62922.1| UDP-N-acetylmuramate--alanine ligase [Bryantella formatexigens DSM
           14469]
          Length = 459

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 125/405 (30%), Gaps = 37/405 (9%)

Query: 66  GLVVV-NTDMVASIGSLSIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGKTTTK 123
              +  +     +     IP+          L +L            IA++G+ GKTTT 
Sbjct: 76  TAAIHPDNPEYKAAADAGIPML----TRAELLGQLMKNY-----PVPIAVSGTHGKTTTT 126

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M++  L +         + +    +P+    + V           +   E         
Sbjct: 127 SMISHLLLADNDD----PTISVGGILPVIHGNIRVGGGDIFL----TEACEYTNSFLDFF 178

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I +I  I   HL  F  I +I  +       L   GT+ +N      E +        
Sbjct: 179 PKIGIILNIDADHLDFFKDINDIRHSFRRFARLLPANGTLIINRAIPQVEEITDGLACRV 238

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           I      G+  +A+        C   S+   +             G H  +N +  L + 
Sbjct: 239 IYYGVQEGRGYSAENISYNELAC--ASFDLKRDGELLGHYELCVPGIHNVENAVAALALA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-----SYNANPASMKAAIS 358
            +L     TA K L  F   + R +                     +     A      +
Sbjct: 297 DLLQIPRQTAQKGLKDFTGTDRRFQYKGKVGGVTIVDDYAHHPTEITATLTAAKNCPHET 356

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +     PH   R  A++ D  +   LS +  + LA++ +     ++   G     L++ +
Sbjct: 357 LWCVFQPHTYTRTKALMDDFAK--ALSLADKVVLADIYAARETDNL---GISSDTLREKI 411

Query: 419 PR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
                  +Y  + D +  F+    V GD +++      G   ++ 
Sbjct: 412 EALGTEAYYFPSFDEIETFLLEKCVHGD-LLIT----MGAGDIVK 451


>gi|165976826|ref|YP_001652419.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876927|gb|ABY69975.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-medo-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 454

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFTKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 325 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 380

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D L   I       D ++V  S
Sbjct: 381 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV-MS 437

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 438 NG-AFGGIHQKLLQALKA 454


>gi|307246327|ref|ZP_07528406.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307253047|ref|ZP_07534932.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255311|ref|ZP_07537124.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259746|ref|ZP_07541467.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306852797|gb|EFM85023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306859505|gb|EFM91533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861760|gb|EFM93741.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866214|gb|EFM98081.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 310 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 365

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D L   I       D ++V  S
Sbjct: 366 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV-MS 422

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 423 NG-AFGGIHQKLLQALKA 439


>gi|224373263|ref|YP_002607635.1| hypothetical protein NAMH_1242 [Nautilia profundicola AmH]
 gi|223589535|gb|ACM93271.1| conserved hypothetical protein [Nautilia profundicola AmH]
          Length = 291

 Score = 44.1 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
                L+  I G  +       V   + +         FF +K    D +D I +AV+ G
Sbjct: 1   MKIETLVNLIGGELLNSPYISEVTSFTNEFEKANRGSCFF-VK----DSND-IEYAVKNG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A  +V       +I    I    VD +  A+  +        K  I 
Sbjct: 55  AYAIVSEK--YENIIDNEIAWIKVDSIKQAVIDVFK--YENLKTKIF 97


>gi|315103158|gb|EFT75134.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA2]
          Length = 471

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 57/393 (14%), Positives = 111/393 (28%), Gaps = 25/393 (6%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E+ +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEVFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYNANPASMKA 355
            S+L       +  ++ F     R +      +           T +  +  A   ++  
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVADVSVFDDYAHHPTELRATLGAARRAVTG 360

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
              V++   PH   R     G   E G         +   +       +   G     + 
Sbjct: 361 QGRVIACFQPHLFSRTRDFAG---EFGSALTLADRVIVSDIYPAREDPI--PGVTGEMVH 415

Query: 416 DA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           DA L       Y      L   +   +  GD+V
Sbjct: 416 DAVLAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|329928513|ref|ZP_08282381.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
 gi|328937772|gb|EGG34180.1| UDP-N-acetylmuramate--L-alanine ligase [Paenibacillus sp. HGF5]
          Length = 458

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 140/403 (34%), Gaps = 45/403 (11%)

Query: 63  KGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA LVV +T +            L+IPV         L++  + ARL ++   +A+ G+
Sbjct: 62  QGADLVVYSTALSKDNVERVEAEKLNIPV---------LHRAQMLARLLNERKGVAVAGA 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+ + +         I               +  +   G  E  ++   E  
Sbjct: 113 HGKTTTSSMIALVMEECGVDPTFIIGGEI--------MNVGTNAKAGEGEHVVAEADESD 164

Query: 177 FLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                  P + V+  I   HL N+      + +A  +    ++  GT  +  DD+  + +
Sbjct: 165 GSFLQYHPWLGVVLNIEADHLENYEGDFNRLKAAYVQFLSQIKADGTAVVCADDNNIQAI 224

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQ 294
                      + ++G   +A++            S+  +    +   V     G H   
Sbjct: 225 LPDL----KCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMELGTVELSVPGKHNVY 280

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N + T+          +  ++A+  F+  + R +     L +    L+ + Y  +P  ++
Sbjct: 281 NAMATVICCLKSGISFEAIVEAIVKFNGAKRRFQ----VLGEAEGILVIDDYAHHPTEIE 336

Query: 355 AAISV--------LSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVW 405
           A IS         ++   P    R   +L       GE  +    D+        I    
Sbjct: 337 ATISAAKATGKRIIAVFQPQRYSRTFFLLDAFSRAFGEADEVIITDIYSPAGEKQIEG-I 395

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            SG  V  +      +    Y  T + +   ++  + +GD+V+
Sbjct: 396 SSGKLVELIVQ--NSNAGARYLPTKEDVLNDLKGRVKEGDLVL 436


>gi|254562107|ref|YP_003069202.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
 gi|254269385|emb|CAX25351.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           DM4]
          Length = 468

 Score = 44.1 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 136/436 (31%), Gaps = 60/436 (13%)

Query: 35  RSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGV 88
           R +A      F         GH      V+  A LVVV+     D    I +    +  V
Sbjct: 46  RRLAENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                A   LA   R +S    +A+ G+ GKTTT  ++   L +       I     +  
Sbjct: 95  ---RRA-EMLAELMRFKS---CVAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIIN-- 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       D+ + E   S           +   +A++T I P HL +F   E I  
Sbjct: 146 -AYGTNARMGAGDWMVVEADES-----DGTFLKLPADVAIVTNIDPEHLDHFGSFEAIKD 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A     + +   G   +  D    + L      +  + I ++G++  AD +L        
Sbjct: 200 AFRRFIDNIPFYGFAVMCIDHPIVQDLV---GHIEDRRIITYGENPQADVRLIDIDLKGG 256

Query: 269 QSWMEVQ-------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           QS   V         + +  ++V    G H A N    L +   L    D   KAL+ F 
Sbjct: 257 QSRFRVMIRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFG 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIA 373
             + R  R          T+ D+  +           A       V++ + PH   R  +
Sbjct: 317 GVKRRFTRT---GEWNGATIFDDYGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQS 373

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMD 431
           +  D C     + +  +          I      G    +L   L    H      E  +
Sbjct: 374 LFEDFCTCFNDADTVIVAPVYAAGEAPIE-----GIDRDSLIAGLKARGHRDAVALERPE 428

Query: 432 GLFLFIQSSLVDGDVV 447
            L   +       D V
Sbjct: 429 DLARLVAGRAGSNDYV 444


>gi|308235556|ref|ZP_07666293.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14018]
 gi|311114356|ref|YP_003985577.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
 gi|310945850|gb|ADP38554.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Gardnerella
           vaginalis ATCC 14019]
          Length = 525

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 28/162 (17%)

Query: 67  LVVVN------TDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSK-----ATIIAIT 114
            VV +      T  +      +IPV   V        +LA   R+ S      A  + IT
Sbjct: 72  AVVTSPVFNPRTPFILEAQKRNIPVISEV--------ELAWLVRVNSDKTNNPAPWVGIT 123

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKT+T EM +  L++       +     +IG  ++ A M  + D    EL    L  
Sbjct: 124 GTNGKTSTTEMTSEMLTACGFDAPAV----GNIGKSVSHAAMESEHDVLCVELSSFQLHF 179

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
                + +R   A IT IA  HL    GIE  A  K+++F G
Sbjct: 180 T----NSMRLDCAAITNIAADHLDWHGGIEAYAKDKSKVFNG 217


>gi|168464693|ref|ZP_02698596.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195632876|gb|EDX51330.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 457

 Score = 44.1 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 63/363 (17%), Positives = 111/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|283458379|ref|YP_003363003.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
 gi|283134418|dbj|BAI65183.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rothia mucilaginosa
           DY-18]
          Length = 528

 Score = 44.1 bits (102), Expect = 0.055,   Method: Composition-based stats.
 Identities = 52/365 (14%), Positives = 106/365 (29%), Gaps = 42/365 (11%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDF 162
            R     + +TG+ GKTTT  M+   L +  K          ++G+P+  A    +  +F
Sbjct: 154 DRPTPKWLCLTGTNGKTTTVGMVDSILKAAGK----KSIQVGNVGMPIVYAIADDEPYEF 209

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L       + + P+ +V+  IA  H+      +   + KA ++E  +    
Sbjct: 210 FAVELSSFQLHWT----YSMSPYASVVLNIAEDHVDWHGSFDGYKADKARVYEHTQVACI 265

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              ++ D+   +  A          +S  +               ++++++ +       
Sbjct: 266 FNTDHVDTLRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFLKNRYNEAYEL 325

Query: 283 VVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V                +   L   ++  A         +     +    R +      
Sbjct: 326 AVLEDLAPAPGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGAHRNQLVGYAN 385

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   NP +  A++S    +     G    V              + +L     
Sbjct: 386 DIMWVNDSKATNPHAANASMSGYPSLVWIAGGLSKGV-------------EYDELIA-AH 431

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS--------------SLVD 443
              +  V + G    ALK AL        +  M                           
Sbjct: 432 AKRLKAVLIIGTDTAALKSALANHAPQVPTYNMTAAVADSSDGVAVMNAAVAKAAELAHP 491

Query: 444 GDVVV 448
           GD V+
Sbjct: 492 GDTVL 496


>gi|307261892|ref|ZP_07543554.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868439|gb|EFN00254.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 439

 Score = 44.1 bits (102), Expect = 0.056,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 310 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 365

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D L   I       D ++V  S
Sbjct: 366 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV-MS 422

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 423 NG-AFGGIHQKLLQALKA 439


>gi|328954378|ref|YP_004371712.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454702|gb|AEB10531.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 344

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 18/104 (17%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M    T  +L Q + G          ++GI +ID     P E  F            F  
Sbjct: 1   MTK--TLKELAQLVGGE-CRGPEDLPLSGINAID--QAGPHEITFVTRP-------KFAR 48

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
              Q  AG  +V+      +G L  P+   DD   A  K+A   
Sbjct: 49  RVEQSRAGAFIVS----PHLGHLGRPLLITDDPYLAYAKIAEVF 88


>gi|297571254|ref|YP_003697028.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931601|gb|ADH92409.1| UDP-N-acetylmuramate/alanine ligase [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 450

 Score = 44.1 bits (102), Expect = 0.057,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 130/397 (32%), Gaps = 38/397 (9%)

Query: 65  AGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A  +VV ++ +       ++ +    D+      LA AA  R     IA+ G+ GKT+T 
Sbjct: 59  ADAIVVRSSAIKPVNPEYAVAIERGQDIWHRSQALAFAAGERD---FIAVAGAHGKTSTS 115

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+++AL ++    +     +   G+P             + E   S    + +     R
Sbjct: 116 GMISVALDTLDADPSRAIGGHLAGGLPGGYLG---SGSMLVAEADESDGSFLNY-----R 167

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IA++T + P HL ++   E    A  +    +   G +    DD     L   +   G
Sbjct: 168 PRIALVTNVEPDHLDHYGSAEAFDQAFVDFAGKIVPGGLLVCCTDDPGAARLAEAAQVHG 227

Query: 244 IKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           ++      K    D  +              V+   +   +     G HM  N +    +
Sbjct: 228 VRIATYGMKPMPGDHTMISGVVSGANGVEAHVRRGDQEAHIRLSVHGTHMLMNAVGAWIV 287

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
              L  D   +  AL+ F     R +             + + Y  +P  ++A +     
Sbjct: 288 CCDLGFDAAESASALASFTGTGRRFELRGEVNGVR----VIDDYAHHPTEVEATLRTA-- 341

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
                 GR   V     +    S++ H   A   +L     + ++           G   
Sbjct: 342 -RSVTTGRVKVVF----QPHLYSRTRHFARAFADALDTADDIIVTSVYAAREVPNDGVEG 396

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            A+   +  S    Y   M      I +    GD+++
Sbjct: 397 DAI---VAHSHKARYIPDMIDAACAIAADSNPGDLIM 430


>gi|313888161|ref|ZP_07821835.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845851|gb|EFR33238.1| bifunctional protein FolC [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 432

 Score = 43.7 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 87/300 (29%), Gaps = 24/300 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD  I E+GM    +   +       I++IT+I+  H+      + I          ++
Sbjct: 133 GVDLAILEVGMGGRADSTNIFTNREKLISLITSISMDHMEYLG--DTIEEIADAKAGIIQ 190

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           + G +     D     +  K          S       D               +V+L  
Sbjct: 191 EGGLVVTTNMDPKILGVIEKEAKEK-----SAELFYTKDLASEILNSDLRGIDFKVKLDD 245

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              E     IG +  +N    +  + +L       I    +    +    + R  +    
Sbjct: 246 VEEEFHLTQIGDYQVENAFGAIYALYLLNKRGILKISLDDIKARIKRSTWKGRMEIVSRD 305

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +    N   +K  +  L           +++L D           H  + E ++ 
Sbjct: 306 PLIILDG-AHNFDGIKRLVESLDNFKFKKLHLIMSILAD---------KEHKKMLEEIAS 355

Query: 399 YNISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           Y    V         G     L              T+D    + + S  +GD++++  S
Sbjct: 356 YT-DEVVFVNLDYKRGTSPDELSSEASEYGLKGQVMTIDEALAYYKKSYQEGDLILITGS 414


>gi|45644633|gb|AAS73021.1| predicted UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 395

 Score = 43.7 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 110/352 (31%), Gaps = 40/352 (11%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           R      + A++G+ GKTTT  ML       +K    +    +      + +        
Sbjct: 59  RELKNRDVFAVSGTHGKTTTSYMLAHIFMDQEKDVGYLIGGISEQ---FSDSAKLGTDKI 115

Query: 163 GIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + E     S   + R       P   +I  I   H   F+ I++I      +       
Sbjct: 116 FVIEADEYDSAFFDKRSKFIHYSPLNLIINNIEFDHADIFNNIDDIKKQFHHLL------ 169

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                         L           +   G   N         +    +   +    K 
Sbjct: 170 ------KIVPKSGNLIYFDDDQNTSDVIKSGLWCNKVVIGSDHIEIDIPNKTLIIDNKKY 223

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
           +       G H  +N +  +   +     ++ +I +L  F   + R       LN   + 
Sbjct: 224 LLKDLPLSGEHNFKNYVCAILAATKGGITIEQSIASLKKFKGVKRRMDLVADILNIKVY- 282

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSFHIDLAEVLSL 398
              + +  +P ++K + + +    P  +     +LG + E+G    S  +H D   ++  
Sbjct: 283 ---DDFAHHPTAIKMSSNSIKDKYPIKK-----ILG-IVELGSNTMSSGYHKD--NLIES 331

Query: 399 YNI-SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             I     L    V    D L         ++ + +   I++ +++ D++++
Sbjct: 332 LKILDKTLLL--DVNNAYDYLNG------FDSEEKMLDCIRTEILEYDIILI 375


>gi|294506930|ref|YP_003570988.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
 gi|294343258|emb|CBH24036.1| UDP-N-acetylmuramate--L-alanine ligase [Salinibacter ruber M8]
          Length = 491

 Score = 43.7 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  A++T++   H   F   ++   A  E    L + G + L  D      L   + 
Sbjct: 202 HYRPQSAIVTSLEFDHADVFVDRDDYRGAFEEFVGRLPRDGQLALCGDAPAVRALADHTR 261

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           A     + ++G + + D +              +++     EV     G H  QN L   
Sbjct: 262 AP----VRTYGLAPSNDIRAEALTPTGSGLSFTLRMGRHREEVRLPLPGRHNVQNALAAA 317

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +         T    L+ F       KR +    +    L+ + +  +P ++ A +  L
Sbjct: 318 LLARREGVSPSTIAAGLASFGG----MKRRQQVRGRPNDVLVVDDFAHHPTAVAATVEAL 373

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------- 413
              + H + R +A+          S+    + A   +      V+L    V         
Sbjct: 374 R--AAHPDRRLVAIF---EPRSNTSRRTRFEAAYGTAFDAADRVFLKAPPVRHNDDPDAM 428

Query: 414 ------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF----YRLINL 463
                       R +     E +D +   +  +L  GDV ++  SN   F     RL + 
Sbjct: 429 LDPTAVAHTIRDRGVPTEVFEDVDAVLPTLTDTLQPGDVALL-MSNG-RFGGLPERLPDA 486

Query: 464 L 464
           L
Sbjct: 487 L 487


>gi|297566092|ref|YP_003685064.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296850541|gb|ADH63556.1| UDP-N-acetylmuramate/alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 463

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 54/356 (15%), Positives = 98/356 (27%), Gaps = 46/356 (12%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGM 169
           + +TGS GKTTT  ML             I        +P            + I E+  
Sbjct: 114 LGVTGSHGKTTTSAMLASIFLEAGTDPTVILGAK----LPSMGGNARYGRGKYRIAEVDE 169

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLS--------NFSGIEEIASAKAEIFEGLEKTG 221
           S               +AV+  + P H+              + +  A            
Sbjct: 170 SDPWFQHLAL-----DVAVVMNLEPDHVGTPTERRPNYHPDFDSLKEAVRRFARN---AQ 221

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +  N +    + L             SFG  +                +  V       
Sbjct: 222 RVVYNAEWPGLDELIQ------HPKRVSFGLEQGDCHTQNLHLLPMSSRFTVVWRGDPLG 275

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            V     G H   + L  + +  +         KAL+ F     R +     L +     
Sbjct: 276 LVELGVPGLHNVVDALAAITVALLEGLPFSAIQKALAAFRGAHRRFE----LLGEIHGAW 331

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSL 398
           + + Y  NP  +++ +      +     R  AV      +   +     + AE   +   
Sbjct: 332 VVDDYAHNPTKVRSVLEA----AKGTGRRVRAVFQPHRYL--RTAQLWAEFAEALGLADE 385

Query: 399 YNISHVWLSGFHV------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +  V+ +G           + D L    H            +++ +L DGD+V+
Sbjct: 386 ALVLEVYAAGEQPIPGVSGRMIADKLIAQGHNAQFLGWSEARDYLEKNLKDGDLVL 441


>gi|213865366|ref|ZP_03387485.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 423

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 71  VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 128

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 129 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 184

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 185 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDTSEWEVWLDGEKVGDV--KW 239

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 240 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 299

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 300 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 351

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 352 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 409

Query: 463 LLLE 466
            LL+
Sbjct: 410 KLLD 413


>gi|163852359|ref|YP_001640402.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218531119|ref|YP_002421935.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240139696|ref|YP_002964173.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
 gi|229620038|sp|A9VWV4|MURC_METEP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766010|sp|B7KSC2|MURC_METC4 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|163663964|gb|ABY31331.1| UDP-N-acetylmuramate--alanine ligase [Methylobacterium extorquens
           PA1]
 gi|218523422|gb|ACK84007.1| UDP-N-acetylmuramate/alanine ligase [Methylobacterium
           chloromethanicum CM4]
 gi|240009670|gb|ACS40896.1| UDP-N-acetylmuramate--L-alanine ligase [Methylobacterium extorquens
           AM1]
          Length = 468

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 84/436 (19%), Positives = 136/436 (31%), Gaps = 60/436 (13%)

Query: 35  RSIAPQEA--FFAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGV 88
           R +A      F         GH      V+  A LVVV+     D    I +    +  V
Sbjct: 46  RRLAENGIRTFV--------GHR--AENVEN-AALVVVSTAIRRDNPELIEARERRLPVV 94

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                A   LA   R +S    +A+ G+ GKTTT  ++   L +       I     +  
Sbjct: 95  ---RRA-EMLAELMRFKS---CVAVAGTHGKTTTTSLVATLLDAGNLDPTVINGGIIN-- 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       D+ + E   S           +   +A++T I P HL +F   E I  
Sbjct: 146 -AYGTNARMGAGDWMVVEADES-----DGTFLKLPADVAIVTNIDPEHLDHFGSFEAIKD 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A     + +   G   +  D    + L      +  + I ++G++  AD +L        
Sbjct: 200 AFRRFIDNIPFYGFAVMCIDHPIVQDLV---GHIEDRRIITYGENPQADVRLIDIDLKGG 256

Query: 269 QSWMEVQ-------LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           QS   V         + +  ++V    G H A N    L +   L    D   KAL+ F 
Sbjct: 257 QSRFRVMIRDRRPGFRMEIEDLVLPMPGRHNALNATAALAVAHELGVPSDAIRKALAGFG 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIA 373
             + R  R          T+ D+  +           A       V++ + PH   R  +
Sbjct: 317 GVKRRFTRT---GEWNGATIFDDYGHHPVEIQAVLRAARASTDGRVIAIVQPHRYTRLQS 373

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMD 431
           +  D C     + +  +          I      G    +L   L    H      E  +
Sbjct: 374 LFEDFCTCFNDADTVIVAPVYAAGEAPIE-----GIDRDSLIAGLKARGHRDAVALERPE 428

Query: 432 GLFLFIQSSLVDGDVV 447
            L   +       D V
Sbjct: 429 DLARLVAGRAGSNDYV 444


>gi|114045894|ref|YP_736444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Shewanella
           sp. MR-7]
 gi|113887336|gb|ABI41387.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Shewanella sp.
           MR-7]
          Length = 439

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 122/382 (31%), Gaps = 48/382 (12%)

Query: 68  VVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLT 127
           + ++T  V +   + I V G  DV     ++A       K  ++ ITGS GK+T   ++ 
Sbjct: 76  IAIDTPEVRAALDMGIEVIG--DVELFAREIADR-----KPCVLGITGSNGKSTVTTLVG 128

Query: 128 IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
             L           +   +IG+P     +  + D  + EL    L      TH +    +
Sbjct: 129 EMLREAGMAV----AVGGNIGIPALDL-LTENADIFVLELSSFQL----ETTHSLNCVAS 179

Query: 188 VITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI 247
               +   H+  +S ++    AK  ++           +      E +            
Sbjct: 180 TCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFNRDDALTIPTEPM----------NQ 229

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            SFG +     +          S +               IG H   N+L  + +V  + 
Sbjct: 230 NSFGLAPPEGDEWGICD-----SKIYHGHSEIMPITEVSLIGSHNHANLLAAMALVYAVG 284

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            D     K    F     R         +   T +++S   N  +  AA+  LS      
Sbjct: 285 VDKQVMAKVARTFTGLSHRC---EVVGVKAGVTYVNDSKATNVGATVAALDGLSDHL--- 338

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G  I + G   +  + S      L E L    ++H+   G     +      +I V   
Sbjct: 339 -GDIILIAGGDGKGADFSP-----LVEPL--TKVTHLITLGRDGNKVAALKEGAIKV--- 387

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ++M             GD+V++
Sbjct: 388 DSMAAAVAKAAELATSGDIVLL 409


>gi|295098380|emb|CBK87470.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 445

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 112/367 (30%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 93  VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 149

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 150 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPE 209

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D     LK              G+  +   +           W  +    K  EV    
Sbjct: 210 NDIN---LKQTMAMGCWSEQELVGEQGHWQAKKLNADASE---WEVLLDGEKVGEVKWGL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVLPADAANA----LGSFINARRRLELRGEAHGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A ++ L      G  R +AVL    +  +MG         L           V
Sbjct: 320 HHPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGICKDDLAPSLGR------ADEV 372

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L         V  + DA  +    H+S  +D L   +  +   GD ++V  SN  GF  
Sbjct: 373 FLLQPQHIPWQVAEVADACIQ--PAHWSADVDVLADMVVKAAQPGDHILV-MSNG-GFGG 428

Query: 460 LINLLLE 466
           +   LL+
Sbjct: 429 IHQKLLD 435


>gi|269956085|ref|YP_003325874.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269304766|gb|ACZ30316.1| UDP-N-acetylmuramate/alanine ligase [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 493

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 125/407 (30%), Gaps = 44/407 (10%)

Query: 68  VVVN---TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VVV+    +    + +       V     AL  L +  R       +A+ G+ GKTTT  
Sbjct: 82  VVVSSAVRETNPELAAARAAGIRVLHRSQALASLMLGQRA------VAVAGAHGKTTTSA 135

Query: 125 MLTIALSSIKKTYACIGSYNNH----IGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLT 179
           M+   L +     +             G    +        D  + E   S    + +  
Sbjct: 136 MIATVLRAAGVDASFAIGGTVRLRAADGTTTAVPGGHRGTSDVLVAEADESDGSFLNYA- 194

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT----IFLNYDDSFFELL 235
               P IAV+T + P HL ++   E   +A       L +       I +   D      
Sbjct: 195 ----PTIAVVTNVEPDHLDHYGTREAFDAAFVAFAGRLRRAADGSVGILVACADDDGAAT 250

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
            A +H     T  ++G S  AD  +      ++ +   V         +   +      N
Sbjct: 251 LAAAHRAHGGTAVTYGTSPGADVVVSDLHSGADGASATVAGGPLGDRPLPLRLAVTGVHN 310

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L     V            A++      G G+R+      G   ++D+  +        
Sbjct: 311 LLNATAAVVTAALLGTPPADAVAGAAAFVGTGRRFEPRGEAGGVRVVDDYAHHPTE---- 366

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH----- 410
             ++L    P     R+ VL     +   ++ F    A  L+L     V ++G +     
Sbjct: 367 IEALLRAARPVAGTGRVLVLFQPH-LYSRTRIFADRFAAALALA--DEVVVTGVYRARED 423

Query: 411 ------VLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                    + D LP       VH  E        I      GD+V+
Sbjct: 424 VDPAVGARTITDLLPTTASGGGVHAVEDRQEAARRIAELARPGDLVL 470


>gi|28199734|ref|NP_780048.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa
           Temecula1]
 gi|182682481|ref|YP_001830641.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa M23]
 gi|32129758|sp|Q87AG0|MURC_XYLFT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229620437|sp|B2I9B2|MURC_XYLF2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|28057855|gb|AAO29697.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa Temecula1]
 gi|182632591|gb|ACB93367.1| UDP-N-acetylmuramate--alanine ligase [Xylella fastidiosa M23]
 gi|307578762|gb|ADN62731.1| UDP-N-acetylmuramate--L-alanine ligase [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 477

 Score = 43.7 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 72/404 (17%), Positives = 121/404 (29%), Gaps = 49/404 (12%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
            VVV++ +      L       IP+        A+  LA   R R     IA+ G+ GKT
Sbjct: 77  CVVVSSAIREDNPELMEARSQRIPIM----PRAAM--LAELMRFRHG---IAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  ++   LS        +        +            + + E   S          
Sbjct: 128 TTTSLIAAVLSEGGLDPTFVIGGQL---LAAGANAKLGAGQWLVVEADES-----DGSFL 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P +AV+T I   HL N+            E  + L   G   L  DD     L  K 
Sbjct: 180 RLNPLVAVVTNIDADHLENYGNDFSRIKDAFTEFLQRLPFYGLALLCLDDPEVAELVGK- 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG-KSMEVVHHGIGYHMAQNMLM 298
                + + ++G    AD +     Q   +    + L   K + V     G H   N L 
Sbjct: 239 ---ARRHVMTYGIDAAADVRAEDVVQDGARMCFTLCLPEGKVIPVTLALPGRHNVLNALA 295

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA-LNQGFFTLIDESYNANPASMKAAI 357
              +   L    +   +AL  F     R        +  G    + + Y  +        
Sbjct: 296 ASAVGWQLGVPPEVIGRALKSFVGIGRRFNDLGDVAIGNGACVRLIDDYGHH------PR 349

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---------- 407
            + +  +    G     L    +    S++     A    L ++  + LS          
Sbjct: 350 ELEAVFAAARGGWPDKRLVVAFQPHRYSRTRDQFDAFAAVLSSVDALVLSEVYPAGEVPI 409

Query: 408 -GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVV 448
            G    AL  A+             +  L   +   L +GD+++
Sbjct: 410 PGADAKALARAIRARGRSEPVVVGQVASLIDVLPDVLQEGDLLL 453


>gi|262037242|ref|ZP_06010724.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
 gi|261748714|gb|EEY36071.1| UDP-N-acetylmuramate--L-alanine ligase [Leptotrichia goodfellowii
           F0264]
          Length = 447

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 51/329 (15%), Positives = 97/329 (29%), Gaps = 24/329 (7%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+++A      T            V   +  +  +   G  E  ++
Sbjct: 110 IAVAGTHGKTTTSSMMSVAFLEKDPTIV----------VGGIIPEIQSNSKIGNSEYFIA 159

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       ++P  +V+T + P HL +    E I  +  +  +  EK     L     
Sbjct: 160 EADESDNSFLFIKPKYSVVTNVEPDHLEHHGTYENIKKSFEKFIDSTEK-----LAILCK 214

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E +   +        YS  K     F      +     +  ++      E      G 
Sbjct: 215 DCEDMSTLNIKNKNIIWYSIKKEDVHIFATNITVKDGCTHYEVIKNGKNLGEFTLCIPGE 274

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE----SY 346
           H   N L  + +      ++DT  + L+ F     R +       +              
Sbjct: 275 HNVSNSLPVIYLADEAGCNMDTVKERLAQFKGANRRYQVIYDKNLRIIDDYAHHPTEIKV 334

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
               A      +V     PH   R      D     + +      +   +      +++ 
Sbjct: 335 TIEAAKATEKGNVTVIFQPHRYSRTKFFFDDFVTSLKKADEL---ILLPIYSAGEDNIY- 390

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFL 435
                  L + +   + V+  E +  L  
Sbjct: 391 -DVSSEKLAEKIGNGVKVYSEEEIQKLVK 418


>gi|78188040|ref|YP_378378.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
 gi|109892699|sp|Q3ANV2|MURC_CHLCH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78170239|gb|ABB27335.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium chlorochromatii
           CaD3]
          Length = 467

 Score = 43.7 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 82/289 (28%), Gaps = 13/289 (4%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P IA++ ++   H+  +  +EE+  A       +   G +    D +
Sbjct: 162 EADEYDRAFLKLTPTIAILNSLESEHMDTYGTLEELKQAFITFANKVPFYGRVICCVDWA 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +         +   +FG  + AD            +   ++  G     V   +  
Sbjct: 222 EIRKIIP----SLNRRYITFGIEEPADVMATDIVLLEGSTTFTIRAFGIEYPNVRIHVPG 277

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                  +      +        + A    +    R  + + + N G   + D +++ + 
Sbjct: 278 KHNVLNALAAFSTGLELGISPERLIAGLGCYSGMRRRFQVKYSGNNGLMVVDDYAHHPSE 337

Query: 351 ASM--------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                           V++   PH   R      +       +   +I            
Sbjct: 338 VKATVKAAKDGWQHSKVVAVFQPHLFSRTRDFADEYGWALSRADEVYIADIYPAREKAAD 397

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
           H  ++G  V            VH+   M+ L+  +Q+ +    +++   
Sbjct: 398 HPGVTGELVANAVRKA-GGKQVHFVNGMEELYTALQTHVAPQTLLLCMG 445


>gi|322515501|ref|ZP_08068487.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
 gi|322118468|gb|EFX90719.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Actinobacillus ureae
           ATCC 25976]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/320 (14%), Positives = 90/320 (28%), Gaps = 29/320 (9%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +            NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGEHNMHNALMTIAAAHHAGVSVAGACEALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAE 394
              T+ D+  +        AI+          G+   +L  + E    +     H +   
Sbjct: 325 NGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 378

Query: 395 VLSLYNISHVWLSGFHV-----LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            LSL + + V++            + D+L +     +S  +D L   +       D ++V
Sbjct: 379 -LSLGDANAVFVYQPDTIPWSVSVITDSLSQ--PAAWSANLDELVALVIKEAKPNDHILV 435

Query: 450 KSSNSCGFYRLINLLLEEFP 469
             SN   F  + N LL    
Sbjct: 436 -MSNG-AFGGIHNKLLNALK 453


>gi|307332564|ref|ZP_07611614.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
 gi|306881785|gb|EFN12921.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces
           violaceusniger Tu 4113]
          Length = 483

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 106/361 (29%), Gaps = 32/361 (8%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R       +A+TG+ GKTTT  ML   L +         +   +IGV L    +
Sbjct: 109 ELAWRLRGEDAPPWLAVTGTNGKTTTVRMLAAILEAAGLR----TAAVGNIGVSLLDIVL 164

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         +R H   +  +AP HL     +   A+ K  I+E
Sbjct: 165 GDEPYDVLAVELSSYQLHWA----PSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE 220

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           G +      +    +   +  A          ++ G    +   + +     +++++  +
Sbjct: 221 GNQVACVYNVADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILV-DRAFVADR 279

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            +          +      N+   L   ++  A                    R     +
Sbjct: 280 QKQAQELAEVSDVNPPAPHNIANALAAAALARAFGVPPKAVRDGLRAFRPDPHRVEHVAD 339

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 ID+S   N  + +A++     I     G       D   +              
Sbjct: 340 VDGVAYIDDSKATNTHAAEASLGAYEHIVWIAGGLAKGATFDELVLT------------- 386

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVV 447
            +   +  V L G     +++AL R         +D                    GD V
Sbjct: 387 -AAERLRGVVLIGADRALIREALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDTV 445

Query: 448 V 448
           +
Sbjct: 446 L 446


>gi|162148962|ref|YP_001603423.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545285|ref|YP_002277514.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|189028992|sp|A9H0J3|MURC_GLUDA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|161787539|emb|CAP57135.1| putative UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532962|gb|ACI52899.1| UDP-N-acetylmuramate/alanine ligase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 480

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 81/426 (19%), Positives = 135/426 (31%), Gaps = 58/426 (13%)

Query: 44  FAIKGPHYDGHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLA 99
            AI      GHD    A   GA  VVV           + +    +  V  V  A   LA
Sbjct: 56  VAI------GHD----AANLGAAQVVVTSTAVRRDNPEVVAARARLIPV--VRRA-EMLA 102

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              RLR     +A+ G+ GKTTT  ++   L + +     I                   
Sbjct: 103 ELMRLRWA---VAVGGTHGKTTTTSLIAAVLEAARLDPTVINGGIIE---AYGTNTRMGS 156

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + E   S           +   I V+T + P HL ++   E + +A  +    +  
Sbjct: 157 GDWMVVEADES-----DGSFLRLPSVITVVTNMDPEHLDHWGTAEAMQAAYDQFVSNIPF 211

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   L  D    + +  +   L    I ++G S  AD +  K       +  EV +  +
Sbjct: 212 YGFAVLCIDHPAVQQMIPR---LSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVTNR 268

Query: 280 SM-------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +              +G+H  QN L  + +   +  D  T   A + F   + R  R   
Sbjct: 269 NRNRTRRAGPFRLPMLGHHNVQNALAAIAVGVEMDIDDATLRSAFAGFRGVKRRFTRTGE 328

Query: 333 ALNQGFFTLIDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGE 383
                    + + Y  +P  + A            V++ + PH   R   + G+ C    
Sbjct: 329 TGG----ITVIDDYGHHPVEIAAVLKAARQAGARDVIAVVQPHRYSRLQTLFGEFCTCMN 384

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSL 441
            + +  +          I      G    AL + L    H         + L   + +  
Sbjct: 385 DAGTVIVADVYAAGEAPI-----PGVDRDALVEGLRERGHRSVVPLPDPEHLAEMVHAIA 439

Query: 442 VDGDVV 447
             GD V
Sbjct: 440 RPGDFV 445


>gi|312795114|ref|YP_004028036.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me
           so-diaminopimelate ligase [Burkholderia rhizoxinica HKI
           454]
 gi|312166889|emb|CBW73892.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (EC 6.3.2.-) [Burkholderia rhizoxinica HKI 454]
          Length = 464

 Score = 43.7 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 28/358 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKT+T  ML   L          G     + +   ++    D  F + E   
Sbjct: 105 VLAVAGTHGKTSTASMLAWLLEDAGMN---PGFLIGGVPLNFGISARLTDSSFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          RP  A++  +   H   F  +  I +    +   + +TG + +N 
Sbjct: 162 YDTAFFDKRSKFVHYRPRTAILNNLEFDHADIFDNLAAIETQFHHLVRTIPRTGRLVVNG 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
            D   + + A+     ++    FG               +++ +       +   V    
Sbjct: 222 TDDALQRVLARGCWSEVER---FGVEGGWQVLPADEASPADERFAVYWRAQRVGVVNWSL 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H   N L  +     +      A  +L  F   + R        +    T+ D+  +
Sbjct: 279 QGEHNRMNALAAIAAAHNVGVPAVQAATSLGGFRNVKRRM---EVRGSIDGVTIYDDFAH 335

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
              A       + ++I      R +AVL    +  ++G +            SL     V
Sbjct: 336 HPSAIGTTIAGLRTRIGDAPHARILAVLEPRSNTMKLGTMKAQL------PASLAGADLV 389

Query: 405 WLSGFHVLA-------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           +  G                 P     H  + +  L   + ++   GD V+V  SN  
Sbjct: 390 FGYGAPSGKDALGWDLGAALAPLGDKAHAFDDLGALVRAVAAAARAGDHVLV-MSNGS 446


>gi|326790202|ref|YP_004308023.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
 gi|326540966|gb|ADZ82825.1| UDP-N-acetylmuramate/alanine ligase [Clostridium lentocellum DSM
           5427]
          Length = 460

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 53/365 (14%), Positives = 99/365 (27%), Gaps = 34/365 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L          T I ++G+ GKTTT  ML   L +                    
Sbjct: 102 KFLGILMKHF-----DTPICVSGTHGKTTTTSMLAHGLMAADLDPTITVGGILKAIHGNI 156

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                        E   S L           P I +I  I   H+  F  I +I  +  +
Sbjct: 157 RIGQSPYFLTEACEYCDSFLDFF--------PQIGIILNIEEDHMDYFKDINQIRHSFQK 208

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               +   G + +N      +       A       +FG   + ++         +++  
Sbjct: 209 FSSKIPSNGFLAINGKVPNLDEF----TAPLSCKTETFGIGSHYNWTAENITFN-DKACA 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              +      + H  +      N+L  L + S+                   G  +R+  
Sbjct: 264 SFDVYYNETFMTHLDLHVPGQHNILNALAVCSVYHFLGLELHLLGKGLEAFTGADQRFEI 323

Query: 333 ALNQGFFTLIDESYNA--------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                  T++D+  +           A       +     PH   R  A L D   +   
Sbjct: 324 KGKINDITIVDDYAHHPTEIAATLEVAKAYPHNHLYVVFQPHTYTRTKAFLDDFAAVLSS 383

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLV 442
           +++  I         N       G       +K    +  +  Y +  + +  ++    V
Sbjct: 384 AENVIITDIYAAREKNP------GDISAEDIIKKINKKGKNALYMKDFEQIANYLNEHTV 437

Query: 443 DGDVV 447
             D+V
Sbjct: 438 PNDLV 442


>gi|325579121|ref|ZP_08149077.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
 gi|325159356|gb|EGC71490.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Haemophilus parainfluenzae ATCC 33392]
          Length = 341

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 21/107 (19%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHA 60
           M   ++  +L   + G   G      VN I+  S    P +              FI +A
Sbjct: 1   MQKSYSLQELATKVGGTLRGNA-DVVVNNIAALS-KAEPNQL------------TFISNA 46

Query: 61  ------VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
                  +  AG++VV+   V      S  +  V D   A   LA  
Sbjct: 47  KFRPLLAESKAGILVVSEADVEFCSPES-NLLIVKDPYVAYALLAQY 92


>gi|297626712|ref|YP_003688475.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922477|emb|CBL57050.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase
           (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase)
           (D-glutamic acid-adding enzyme) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 494

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 85/338 (25%), Gaps = 44/338 (13%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI-----ASA 209
             P   D    EL    L     L+       A    +   HL  +S   +      A  
Sbjct: 171 NDPAGYDVLAVELSSFQLHWSDSLSLYS----AAALNLHADHLEWYSYAGDTDAAMVAYG 226

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SE 268
             +             N  +     +  ++  +       F        ++        +
Sbjct: 227 ADKAKIFHNVRTACVYNVAEPATRTMVEEAEVIEGARAIGFTLGIPKVAEVGVVDDMLVD 286

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           +++++ +            +      N+   L   ++  +                  G 
Sbjct: 287 RAFVQERQTSAMPVAALSDVHPFAPHNVENALAAAALTRSFGVPPRAVAQGLRDLHLGGH 346

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           R          T +D+S   NP +  +++     I     G+           G      
Sbjct: 347 RIETVAQSDGITWVDDSKATNPNAANSSMRAYEHIVWIAGGQTK---------GTSFDEL 397

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRS---IHVHYSET-----MDGLFLFIQSS 440
               A+ L       V L G     + DAL R    + V   +      MD         
Sbjct: 398 LTRHAKRLR-----GVVLLGVDRQVIADALRRHAPRVPVVVLDGKQTGVMDQAVQEASRM 452

Query: 441 LVDGDVVVV------K------SSNSCGFYRLINLLLE 466
              GD V++      K      ++    F R +  LL 
Sbjct: 453 ARPGDTVLLAPGAASKDMWTGYAARGDDFARAVKSLLA 490


>gi|268319719|ref|YP_003293375.1| hypothetical protein FI9785_1248 [Lactobacillus johnsonii FI9785]
 gi|262398094|emb|CAX67108.1| folC [Lactobacillus johnsonii FI9785]
          Length = 421

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               +++A  ++L+ +    +G+   +LG M +  +G +++ F  +    ++L  I +  
Sbjct: 304 DGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLGPVTKLFKDE---KVTLTRIDY-- 358

Query: 406 LSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D    +     Y E  +  +  +++ L   D+++V  S
Sbjct: 359 ---PRAARLEDFPKEAQKEFEYKENFEEAYTSLKNKLQADDMLLVTGS 403


>gi|227889742|ref|ZP_04007547.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
 gi|227849606|gb|EEJ59692.1| possible tetrahydrofolate synthase [Lactobacillus johnsonii ATCC
           33200]
          Length = 421

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               +++A  ++L+ +    +G+   +LG M +  +G +++ F  +    ++L  I +  
Sbjct: 304 DGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLGPVTKLFKDE---KVTLTRIDY-- 358

Query: 406 LSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D    +     Y E  +  +  +++ L   D+++V  S
Sbjct: 359 ---PRAARLEDFPKEAQKEFEYKENFEEAYTSLKNKLQADDMLLVTGS 403


>gi|190150723|ref|YP_001969248.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915854|gb|ACE62106.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 90/320 (28%), Gaps = 27/320 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFTKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI+          G+   +L  + E    +        ++A
Sbjct: 325 KGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 378

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+  N   V+      + V  + D L +     +S  +D L   I       D ++V 
Sbjct: 379 PSLADANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV- 435

Query: 451 SSNSCGFYRLINLLLEEFPA 470
            SN   F  +   LL+   A
Sbjct: 436 MSNG-AFGGIHQKLLQALKA 454


>gi|169629094|ref|YP_001702743.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium abscessus
           ATCC 19977]
 gi|226711870|sp|B1MP38|MURC_MYCA9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|169241061|emb|CAM62089.1| UDP-N-acetylmuramate--L-alanine ligase MurC [Mycobacterium
           abscessus]
          Length = 490

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 78/445 (17%), Positives = 150/445 (33%), Gaps = 56/445 (12%)

Query: 53  GHDFILHAVQK---GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAA 102
           GHD    A+     G  +VV     +              IPV     V   L  L    
Sbjct: 61  GHD--GDALDLLPGGPTVVVTTHAAIPKTNPELVEANRRGIPVLLRPVV---LADLMAGY 115

Query: 103 RLRSKATIIAITGSVGKT-TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
           R       + +TG+ GKT TT  ++             +G   N  G            D
Sbjct: 116 R------TLMVTGTHGKTSTTSMLIVALQHCGYDPSFAVGGELNEAGT----NAHHGSGD 165

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E   S    +++     RP++ ++T I   HL +F  +E  ++   E  E L   G
Sbjct: 166 VFVAEADESDGSLLQY-----RPNLIIVTNIEADHLDHFGSVEAYSAVFDEFAETLGSEG 220

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA--------DFQLRKWKQCSEQSWME 273
            + +  DD     L  ++H  GI+        +            +  ++K     + ++
Sbjct: 221 VLVVCLDDPGAAALARRAHERGIRVRGYGSADQAEAGDVPVAGQLRDWQFKDTGATAQIQ 280

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +  +     +     G HMA N L  +   + + A VD  +  L+ F     R +     
Sbjct: 281 LAGESAPRTMRLSVPGRHMALNALAAVVTAAEIGAAVDDVLDGLAGFEGVRRRFELVGSV 340

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
            +      + + Y  +P  ++  +  +S I       R  V+     +   + +F  + A
Sbjct: 341 ESVR----VFDDYAHHPTEVRTVLQAVSGIVAQQGFGRSVVVFQPH-LYSRTAAFATEFA 395

Query: 394 EVLSLYNISHVW---------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
           + LS+ ++  V          L G     + + +     VHY   +  +   + ++   G
Sbjct: 396 DALSIADLVFVLDVYGAREAPLPGVTGALIVEQIA-GAPVHYLPDLSTVAQQVAAATAPG 454

Query: 445 DVVVVKSSNSCGF--YRLINLLLEE 467
           D+V+   +         ++  L   
Sbjct: 455 DLVITMGAGDVTLQGKEIVRALRAR 479


>gi|119475944|ref|ZP_01616296.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
 gi|119450571|gb|EAW31805.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2143]
          Length = 451

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 106/373 (28%), Gaps = 23/373 (6%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L     +IA+ G+ GKTTT  M       ++      G     +      +    + DF
Sbjct: 87  YLLHDKWVIAVAGTHGKTTTTSMTA---WILEYAGLKPGFLVGGVPANFGYSARLGETDF 143

Query: 163 GIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
            + E                   P  A+   +   H   F  +  I +    +   +   
Sbjct: 144 FVIEADEYDTSYFDRRSKFLHYHPRTAIFNNLEYDHADIFPDLAAIQNQFHLLVRTIPGE 203

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
           G I    +D+    +  K       +      SK +   + +       S          
Sbjct: 204 GLIIHPSNDNNVAEVLLKGCWSKTLSFGPDISSKLSGTAISEDHSHFSVSLNGPDQNKIV 263

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            E+     G H   N L  +     +      A +ALS F   + R             T
Sbjct: 264 GEINWLMTGLHNMNNALAAIAAARHVGISPAIACEALSKFTGVKRR---MEVIYESAEMT 320

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
           + D+  +   A       +  Q+        +       ++G  + +    +       +
Sbjct: 321 VYDDFAHHPTAIETTLEGLRKQVGKDAILAIVEPGSHTMKLGIHADTLADSV------SH 374

Query: 401 ISHVWLSGF-----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV--VVVKSSN 453
              V           +  + DA      +    + D L   I +     ++  VV+  SN
Sbjct: 375 ADEVIWFKPANIKWDIDKIVDASSNGPKMSVINSHDVLLDEIIARAKSKEIQHVVI-MSN 433

Query: 454 SCGFYRLINLLLE 466
           S GF  L   L+E
Sbjct: 434 S-GFGGLHRRLVE 445


>gi|42518884|ref|NP_964814.1| hypothetical protein LJ0959 [Lactobacillus johnsonii NCC 533]
 gi|41583170|gb|AAS08780.1| hypothetical protein LJ_0959 [Lactobacillus johnsonii NCC 533]
 gi|329667570|gb|AEB93518.1| hypothetical protein LJP_1196c [Lactobacillus johnsonii DPC 6026]
          Length = 421

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 47/108 (43%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               +++A  ++L+ +    +G+   +LG M +  +G +++ F  +    ++L  I +  
Sbjct: 304 DGAHNLQAMENLLNLVRKKKKGQIYVLLGMMKDKDLGPVTKLFKDE---KVTLTRIDY-- 358

Query: 406 LSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D    +     Y E  +  +  +++ L   D+++V  S
Sbjct: 359 ---PRAARLEDFPKEAQKEFEYKENFEEAYTSLKNKLQADDMLLVTGS 403


>gi|39936594|ref|NP_948870.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris CGA009]
 gi|62900683|sp|Q6N409|MURD_RHOPA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|39650450|emb|CAE28973.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Rhodopseudomonas
           palustris CGA009]
          Length = 469

 Score = 43.7 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 107/377 (28%), Gaps = 43/377 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L               +IG  +     P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWD----TQLGGNIGTAILSLEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD F      +    G + +    +                          K   +  
Sbjct: 224 GVDDEFGRAAADRIERAGKRVVRMSVQGPVTFGITADLDSIRRVDGGTSTEVAKLGGIGS 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               ++          ++++  +         S         +  R    QG    +++S
Sbjct: 284 LRGLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEQGTTLFVNDS 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A++    I     G+     G +  + E                 I   +
Sbjct: 344 KATNADAAAKALASFGDIFWIAGGKPKT--GGIESLAEYFPR-------------IRKAY 388

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------SLVDGDVVVV---KSS---- 452
           L G         L   +    SET++                    VV++    +S    
Sbjct: 389 LIGQAAQEFAATLEGRVPYEISETLEAAVPAAARDAAASGLAEP--VVLLSPACASFDQF 446

Query: 453 -----NSCGFYRLINLL 464
                    F  L+  L
Sbjct: 447 RNFELRGTRFRELVTAL 463


>gi|46143515|ref|ZP_00135096.2| COG0773: UDP-N-acetylmuramate-alanine ligase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 439

 Score = 43.7 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 90/320 (28%), Gaps = 27/320 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI+          G+   +L  + E    +        ++A
Sbjct: 310 KGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 363

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+  N   V+      + V  + D L +     +S  +D L   I       D ++V 
Sbjct: 364 PSLADANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV- 420

Query: 451 SSNSCGFYRLINLLLEEFPA 470
            SN   F  +   LL+   A
Sbjct: 421 MSNG-AFGGIHQKLLQALKA 439


>gi|322831189|ref|YP_004211216.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
 gi|321166390|gb|ADW72089.1| UDP-N-acetylmuramate [Rahnella sp. Y9602]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 109/355 (30%), Gaps = 31/355 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA--RMPVDVDFGIFEL 167
           +IA+ G+ GKTTT  M+T  L +       +       GVP          +  F + E 
Sbjct: 105 VIAVAGTHGKTTTAGMVTWILEACGYEPGYVIG-----GVPGNFEVSARLGNSPFIVLEA 159

Query: 168 GMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                             P   ++  +   H   F  ++ I      +   +   G I L
Sbjct: 160 DEYDCAFFDKRSKFVHYSPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIL 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              D+       +  A+G  +   F           K       ++          +V  
Sbjct: 220 PEHDTP----LKQVMAMGCWSEQEFVGDAENCVWDAKKLTPDSSTFEVYLHGEAVGQVKW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
           + +G H   N LM +     +    + A KA           +R            + + 
Sbjct: 276 NLVGEHNMHNGLMAIAAARHVGVKPEDACKA----LGDFINARRRLELRGVENDVSVYDD 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++ A +S L      G  R +AVL    +  +MG         L          
Sbjct: 332 FAHHPTAILATLSALRS-KVGGTARILAVLEPRSNTMKMGMSKNELAPSLGR------AD 384

Query: 403 HVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            V+L         + +     I   H+S  +D L   +  +   GD ++V  SN 
Sbjct: 385 EVFLLQPQHIPWQVAEVAEHCIQPAHWSADVDSLVDMVVKASQPGDHILV-MSNG 438


>gi|167740249|ref|ZP_02413023.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Burkholderia pseudomallei 14]
          Length = 177

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 396 LSLYNISHVWLSGFHVL------ALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            SL +   V+  G          +L DAL          + +  L   + +S   GD V+
Sbjct: 87  ASLADADLVFGYGAPSGRDALGWSLPDALAPLGGKARAFDDLHALVKAVTASARPGDHVL 146

Query: 449 VKSSNSCGFYRLINLLLEEFPA 470
           V  SN  GF  +   LL+   A
Sbjct: 147 V-MSNG-GFGGVHQKLLDALSA 166


>gi|16763236|ref|NP_458853.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29144715|ref|NP_808057.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213584532|ref|ZP_03366358.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213649722|ref|ZP_03379775.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|289829256|ref|ZP_06546868.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|25293612|pir||AC1056 murein peptide ligase (EC 6.3.2.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505544|emb|CAD06896.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29140354|gb|AAO71917.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDTSEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 386 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|189082527|sp|Q10XH7|MURC_TRIEI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 539

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 59/439 (13%), Positives = 137/439 (31%), Gaps = 69/439 (15%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T +        +   L  P+F   D+L AL +             IA+ G+ GKTT
Sbjct: 121 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAALIQ---------DYQSIAVAGTHGKTT 171

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         +                     + + E   S           
Sbjct: 172 TSSLIGFMLLEAGLDPTIVIGGEVD---AWGGNARLGRSPYLVAEADES-----DGSLVK 223

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  HI V+T I   H  ++  ++++        E         L        + +     
Sbjct: 224 LSAHIGVVTNIELDHPDHYDSLDQVVEIFQVFKEN-----CQNLVGCIDCSTVREKLQPT 278

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +     +        D    +            +      ++    +G H   N L  + 
Sbjct: 279 ISYSINFESDAHYKVDCVHYQSNVTL---ARVWEKGQILGQLKLRLLGKHNLSNALAAVA 335

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  +  T   A+++F     R +       +    +  + Y  +P+ + A ++  +
Sbjct: 336 VGRLLGLEFSTITSAIALFEGAHRRFEY----RGECNGIVFVDDYAHHPSEINATLAAAN 391

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHID-----------------LAEVLSLYN---- 400
                    +  +      +   + S  I+                 ++E    +N    
Sbjct: 392 LQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAFISEFAQSFNDADM 451

Query: 401 --ISHVWLSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV-VVVK 450
             +++++ +G       +   + +A+ R    V+Y  ++D +  F+   L  GD+ + + 
Sbjct: 452 VIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLKPGDLAIFLS 511

Query: 451 SSNSCGFYRLINLLLEEFP 469
           + N     ++I  L+  + 
Sbjct: 512 AGN---LNQIIPELMARYQ 527


>gi|119511605|ref|ZP_01630712.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
 gi|119463766|gb|EAW44696.1| UDP-N-acetylmuramate--L-alanine ligase [Nodularia spumigena
           CCY9414]
          Length = 495

 Score = 43.7 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 66/402 (16%), Positives = 115/402 (28%), Gaps = 44/402 (10%)

Query: 68  VVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T + A+         L  P+    DVL AL          S    IA+ G+ GKTT
Sbjct: 97  VVCSTAINANNLEYKAALELGCPILHRSDVLAALI---------SDYHSIAVAGTHGKTT 147

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L         I                     + + E   S           
Sbjct: 148 TSSMIGYMLLEAGLDPTIIVGGEVD---AWEGNARLGQSQYLVAEADES-----DGSLVK 199

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT I   H  ++  +EE+ +   +  +  +         D      L   S  
Sbjct: 200 HAPEIGIITNIELDHPDHYETLEEVVNIFQKFADSCKTL---ISCIDCYQVRDLLRNSGG 256

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
              K   ++  +   D                  +  K   +    +      N+   L 
Sbjct: 257 DRFKPTITYSLNPETDADYTATNIDYRADGTTALVWEKGKALGVLKLRLLSRHNLSNALS 316

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            V++  A               EG  +R+      G  T ID+   A+  S        +
Sbjct: 317 AVAVGRALGLEFGTIAKGIATFEGARRRFEFRGEVGGITFIDDY--AHHPSEIRVTLAAA 374

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL--------- 412
           ++    E R +A+          + +F  + AE     +   V L+  +           
Sbjct: 375 RLQARPEQRVVAIFQPHRY--SRTFTFLAEFAESF--THADLVVLTDIYSAGEPNLGQIS 430

Query: 413 ---ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 +       V Y   +  +  F+  +L  GD+ +   
Sbjct: 431 GEQLAAEIAKLHPQVLYQPNLPLMSEFLLQTLRPGDLALFLG 472


>gi|300906078|ref|ZP_07123798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|301302661|ref|ZP_07208791.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|300402086|gb|EFJ85624.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 84-1]
 gi|300842186|gb|EFK69946.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 124-1]
 gi|315255588|gb|EFU35556.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 85-1]
          Length = 445

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 114/374 (30%), Gaps = 34/374 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A+ G+ GKTTT  M        +  Y          G     AR+     F I      
Sbjct: 94  LAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEYD 151

Query: 171 HLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                +        P   ++  +   H   F  ++ I      +   +   G I    +D
Sbjct: 152 CAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEND 211

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGI 288
              +              +S  +        +  K  ++ S  EV     K  EV    +
Sbjct: 212 INLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV 264

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A  A           +R      +     + + +  
Sbjct: 265 GEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFAH 320

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
           +P ++   ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 321 HPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEVF 373

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY---- 458
           L           + A       H+S  +D L   +  +   GD ++V  SN  GF     
Sbjct: 374 LLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 431

Query: 459 RLINLLLEEFPAIQ 472
           +L++ L ++  A Q
Sbjct: 432 KLLDGLAKKAEAAQ 445


>gi|192292416|ref|YP_001993021.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris TIE-1]
 gi|192286165|gb|ACF02546.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris TIE-1]
          Length = 469

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 55/377 (14%), Positives = 111/377 (29%), Gaps = 43/377 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L               +IG  +     P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWD----TQLGGNIGTAILSLEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTSII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD F      +    G + +    +           +        +     K   +  
Sbjct: 224 GVDDEFGRAAADRIERAGKRVVRMSVQGPVQSGITADLETIRRIDGGKSTEVAKLGGIGS 283

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               ++          ++++  +         S         +  R    +G    +++S
Sbjct: 284 LRGLHNAQNAAAAAAAVLALGVSPEVLQQGLRSFPGLAHRMEQVGRQVGEKGTTLFVNDS 343

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A++   +I     G+     G +  + E   S             I   +
Sbjct: 344 KATNADAAAKALASFGEIFWIAGGKPKT--GGIESLAEYFPS-------------IRKAY 388

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------SLVDGDVVVV---KSS---- 452
           L G         L   +    SET++                    VV++    +S    
Sbjct: 389 LIGQAAQEFAATLEGRVPYEISETLEAAVPAAARDAAASGLAEP--VVLLSPACASFDQF 446

Query: 453 -----NSCGFYRLINLL 464
                    F  L+  L
Sbjct: 447 RNFELRGTRFRELVTAL 463


>gi|307564720|ref|ZP_07627250.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
 gi|307346648|gb|EFN91955.1| putative UDP-N-acetylmuramate--alanine ligase [Prevotella amnii
           CRIS 21A-A]
          Length = 459

 Score = 43.7 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 91/340 (26%), Gaps = 40/340 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           L  L    R       +   G+ GKTTT  M    +              +      T  
Sbjct: 105 LGTLTRTHRG------LCFAGTHGKTTTSSMCAHIMHQSSVGCTAFLGGISKN--YGTNY 156

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D+ + E       E     H +RP + VIT+  P HL  +   E    +     
Sbjct: 157 ILSNKSDYVVIEAD-----EFDRSFHWLRPWMTVITSTDPDHLDIYGTKEAYLESFRHYT 211

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E ++  G + ++ D      ++              G     + +++      +      
Sbjct: 212 ELIKAGGALIIHKDLEMKPNVQEGVRVYEYSREE--GDFHADNVRIKDGTIIFDFISPIE 269

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
            ++    +V          +N +  + +  +     +   + +  +   + R        
Sbjct: 270 PIK----DVELGQPIPINIENSIAAMAMAQLNGVIPNEIREGIKTYSGVDRRFDFKVKNA 325

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                +           S K+   + S        +          +   ++ F+ + A 
Sbjct: 326 KHVVLSDYAHHPKEILQSAKSLKELYSNRKITVIFQPH--------LYTRTRDFYKEFAY 377

Query: 395 VLSLYNISHVWLS-----------GFHVLALKDALPRSIH 423
            L       V L+           G     + D L   + 
Sbjct: 378 SL--SFFDEVILTEIYPAREEPIEGVTSKLIYDNLKEGVQ 415


>gi|296537028|ref|ZP_06899021.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
 gi|296262644|gb|EFH09276.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Roseomonas cervicalis ATCC 49957]
          Length = 425

 Score = 43.7 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 71/388 (18%), Positives = 128/388 (32%), Gaps = 34/388 (8%)

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
           P+    D   AL ++A A   +  A  +A+TG+ GKT+T + L    +      A +G+ 
Sbjct: 14  PLLTDPDPRRALARMAAAFHGQQPAIAVAVTGTNGKTSTVDFLRQIWTLAGDRAASLGTL 73

Query: 144 NNHIGVPLTLARMPVDVDFGIFE--------------LGMSHLGEIRFLTHLVRPHIAVI 189
                       +       + E              L  S  G  +     +R   A  
Sbjct: 74  GLRAPGFPETPSLTTPDPVLLHETLAGLARAGVQKVALEASSHGLEQRRLDGLRLTAAGF 133

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA-KSHALGIKTIY 248
           + +   HL    G+   A+AK  +F+ L   G   +   D   E+L+A ++ A       
Sbjct: 134 SNLTRDHLDYHGGMAAYAAAKLRLFDTLLDQGDGAVANADMAPEMLEALRAVARRRHLRL 193

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
           +         +L +     +   +E+ L G+  E++    G   A N+++  G+      
Sbjct: 194 ATVGEAGEAIRLLRHTPRPDGQALELTLYGRRAELLLALPGRFQADNVMLAAGLAVSAGM 253

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             D     L       GR +      N      +D ++  +         +L+ + PH E
Sbjct: 254 PADKVAGLLPRLTGVRGRMELAARLPNGA-AVYVDYAHTPDALE-----RLLTALRPHAE 307

Query: 369 GRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----GFHVLALKDA----LP 419
           GR   V G     G         L   +      H  L+     G    A++ A    + 
Sbjct: 308 GRLHVVFGA----GGDRDGGKRPLMGEVCARLADHAILTDDNPRGEDPAAIRAAVRAGMA 363

Query: 420 RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               +              ++L  GDV+
Sbjct: 364 GGAAITEIGDRAAAIEAGLAALGPGDVL 391


>gi|320175807|gb|EFW50891.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Shigella dysenteriae CDC
           74-1112]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +         A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADTANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTSQPGDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|222086443|ref|YP_002544977.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
 gi|221723891|gb|ACM27047.1| UDP-N-acetylmuramate--alanine ligase protein [Agrobacterium
           radiobacter K84]
          Length = 471

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 71/411 (17%), Positives = 130/411 (31%), Gaps = 35/411 (8%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VVV+T +  S   L+     +  V  V  A   LA   R R   
Sbjct: 58  GHK----AENLGDAEVVVVSTAIKKSNPELAAAREKLLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L +       I     +            + ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGGIIN---AYGTNARMGEGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   +AV+T I P HL ++   + + +A  +  E +   G   L  D
Sbjct: 165 ES-----DGTFLKLPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCID 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               + L  +     I    ++G++  +D +    +    +S  +++++ +    V H  
Sbjct: 220 HPEVQSLVGRIEDRKII---TYGENPQSDVRFSNVRIDGTRSLFDIEIRRRRTGKVIHIK 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              M       +   +   A  +    +              +            + ++ 
Sbjct: 277 DLVMPMPGRHNISNATAAVAVANRLGISNEAIAKGLASFGGVKRRFTLTGEWNGVKVFDD 336

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLS 407
                    +VL       +GR IAV          S                ++ V+ +
Sbjct: 337 YGHHPVEIKAVLKAAREACKGRVIAVHQPHRYTRLASLFEEFAACFNDADSIFLAPVYAA 396

Query: 408 GF------HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
           G           L   +    H    Y  + + L   I      GD VV++
Sbjct: 397 GEEPIEGVDSQELVSRIKAGGHRDARYLSSQEDLAPLIAEIAQPGDFVVLL 447


>gi|254391593|ref|ZP_05006792.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294812134|ref|ZP_06770777.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|326440710|ref|ZP_08215444.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705279|gb|EDY51091.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324733|gb|EFG06376.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 492

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 112/409 (27%), Gaps = 58/409 (14%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY-----------------AC 139
           +LA   R    A  +A+TG+ GKTTT  ML   L +                        
Sbjct: 102 ELAWRLRGPDAAPWLAVTGTNGKTTTVRMLAAILEAAGLRTAAVGNIGVSLLDAVLGENT 161

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
             +     G            D    EL    L         +R H A +  +AP HL  
Sbjct: 162 GENAGQDAGRDGGEGADANAYDVLAVELSSYQLHWA----PSLRAHSAAVLNLAPDHLDW 217

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+ K  I+EG         N  D   E L  ++          F        Q
Sbjct: 218 HGSMEAYAADKGRIYEGNTVAC--VYNAADPATEDLVREADVEEGCRAIGFTLGTPGPSQ 275

Query: 260 LRKWK-QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           L        +++++  + Q          I      N+   L   ++  A    A     
Sbjct: 276 LGVVDGILVDRAFVANRHQQAQELAEVADIDPPAPHNIANALAAAALARAFGVPATAVRE 335

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R     +      +D+S   N  +  A+++    I     G     + D 
Sbjct: 336 GLRSFRPDPHRIEKVADVAGVAYVDDSKATNTHAAAASLAAYEPIVWIAGGLAKGAVFD- 394

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD------- 431
            E+          + +      +  V L G     +++AL R         +D       
Sbjct: 395 -EL----------VGQSADR--LRAVVLMGADRALIREALARHAPEVPVVDLDRTDTGAM 441

Query: 432 -GLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
                        GD V++    +S             F   +  L  E
Sbjct: 442 AAAVREAARLARPGDTVLLAPACASMDMFVNYTKRGEAFADAVRALAAE 490


>gi|303250757|ref|ZP_07336952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650362|gb|EFL80523.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 89/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 325 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 380

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D L   I       D ++V  S
Sbjct: 381 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV-MS 437

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 438 NG-AFGGIHQKLLQALKA 454


>gi|291296381|ref|YP_003507779.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Meiothermus ruber
           DSM 1279]
 gi|290471340|gb|ADD28759.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Meiothermus ruber
           DSM 1279]
          Length = 424

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 94/356 (26%), Gaps = 56/356 (15%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A      S+  +I ITG+ GKT+        L ++       G+ +        LA +  
Sbjct: 87  AELVYRHSQTPLIGITGTAGKTSCTLFTGHFLRALGFKAVEGGNID------PPLASVVD 140

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D +    E+    L          RP +AV+  +   HL     +E   +AK  + + L 
Sbjct: 141 DAEVVAAEMSSFQL----ERVVHFRPRVAVLLLLGVDHLDRHGSLEAYHAAKLNLIKNLT 196

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +  N  D         S A       +    +       +      Q     Q   
Sbjct: 197 AEDALVYNAKDPRILAGIEGSPARRYPFEPANSPRETNLNAALQAALAYAQIVQREQPGR 256

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                                                             RY    + G 
Sbjct: 257 TWAVEPSAQGLAPYRATAPQ---------------------------PEARYEVFAHIGG 289

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              ID+S      S++ A+           G    +LG     G    +   +L EV++ 
Sbjct: 290 LQFIDDSIATRLDSVRMALEAA-------PGPVAWILG-----GVDKGAPSAELLEVVAR 337

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYSETMD------GLFLFIQSSLVDGDVVV 448
             +  +   G     L   L   + V      D         L  +  L  G V++
Sbjct: 338 -KVRLILAVGRDGPHLAAPLRGQVEVVEISEPDGRKALREAVLEARRRLTTGSVLL 392


>gi|215427537|ref|ZP_03425456.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Mycobacterium tuberculosis T92]
          Length = 125

 Score = 43.7 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 15/84 (17%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSE--T 429
           G+        +  + +      V ++  +             L  A          E   
Sbjct: 12  GDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIAD 70

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                    +    GDVV++  K 
Sbjct: 71  RRDAIRHAVAWARPGDVVLIAGKG 94


>gi|297571251|ref|YP_003697025.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931598|gb|ADH92406.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 493

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 55/392 (14%), Positives = 107/392 (27%), Gaps = 33/392 (8%)

Query: 97  KLAVAARLRSK----ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           +LA   R ++     A  + +TG+ GKTTT  M+   + +       +G+        ++
Sbjct: 108 ELAWHLRAQADDGTYAPWLCVTGTNGKTTTVGMVESIVQAAGLRALAVGNVGVPAVTAVS 167

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                        EL    L      T+ + P  A++  +A  HL   S  EE A+AKA 
Sbjct: 168 DTSAN-APQVFACELSSFQL----AATYSMEPTSAIVLNLADDHLEWHSTREEYANAKAT 222

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I+E   +     +        +  A           S G          +     ++++ 
Sbjct: 223 IYERTHRACVYPVGDSVVQGMVDSADVIEGARAIGVSLGIPSLGQLGFVE-DVAVDRAFN 281

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                          + +   +   +   I     A    A              + Y  
Sbjct: 282 ATAHSHAEELFTLADLEHLSPEGYALPAHIAKDALAAAALARSIGIPASAVAQGLRDYTP 341

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
             ++               S               +      +      G    +    +
Sbjct: 342 GAHRIAHVATVNGVAYVDDSKATNAHAAQASLLGHDTATTIWIAGGLAKGACFDALVERV 401

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSET-----MDGLFLFIQSSLVDGDV 446
            + L+      V + G      + AL    + V Y +T     M        +  V G  
Sbjct: 402 RDRLA-----GVVVIGVDQEPWRAALAHLDVPVTYIDTDAQDPMAEAVAQATALAVPGQT 456

Query: 447 VVV---KSS---------NSCGFYRLINLLLE 466
           V++    +S             F + +  L+ 
Sbjct: 457 VLLAPACASQDQFVSYGERGDKFAKAVAELVA 488


>gi|305680833|ref|ZP_07403640.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659038|gb|EFM48538.1| UDP-N-acetylmuramate--L-alanine ligase [Corynebacterium matruchotii
           ATCC 14266]
          Length = 477

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 120/391 (30%), Gaps = 33/391 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +    +IPV    D    L +L       + +T + I G+ GKT+T  M  +A+
Sbjct: 83  DNPELVAAREQNIPVIRRSD---LLGELM------TGSTQVLIAGTHGKTSTTSMAVVAM 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +                 + E   S    +R+      P IAV+T
Sbjct: 134 QAAGMDPSFAIGGQLNK---AGTNAHQGSGHCFVAEADESDASLLRYS-----PDIAVVT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  F   E       +    L  TG + +  DD     L  +         Y  
Sbjct: 186 NIEPDHLDFFHTPEAYFQVFDDFASRLTDTGVLVVCLDDEHAAALGERQKTKVTVRGYGS 245

Query: 251 G-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                     A   +       + S   +++  + +EV     G HM  N    L    +
Sbjct: 246 AAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAGVL 305

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQI 363
              DV    + +S F     R + +      +     + D+  +          +   ++
Sbjct: 306 AGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTAAREKL 365

Query: 364 SPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKD 416
           +  G G+ I V    M    +   +   +   +     +  ++ +      G     + D
Sbjct: 366 AARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIYGAREQPHDGITSQLIID 425

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +     V +      +   +      GD+V
Sbjct: 426 RMTN--KVVHQPNFSLVPQTVAELAHPGDMV 454


>gi|78484929|ref|YP_390854.1| UDP-N-acetylmuramate--alanine ligase [Thiomicrospira crunogena
           XCL-2]
 gi|109892753|sp|Q31I43|MURC_THICR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78363215|gb|ABB41180.1| UDP-N-acetylmuramate--L-alanine ligase [Thiomicrospira crunogena
           XCL-2]
          Length = 461

 Score = 43.7 bits (101), Expect = 0.069,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 114/360 (31%), Gaps = 34/360 (9%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           +VVV+T +      +       IPV        A+  LA   R+R     IAI G+ GKT
Sbjct: 67  VVVVSTAIAKDNPEVCFAKESRIPVI----PRAAM--LAELMRMRFG---IAIAGTHGKT 117

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  + +  L+        +     +               + I E   S    +     
Sbjct: 118 TTTSLASAILTEGGLDPTFVIGGKLNQ---FDSNARLGSSQYLIAEADESDASFLH---- 170

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            + P ++V+T I   H+  +      +     E    L   G   +  DD   + +  K 
Sbjct: 171 -LSPMMSVVTNIDEDHMETYQGDYANLEQTFIEFIHRLPFYGVAIVCIDDQNIQNMLPKL 229

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                   +S      A   L +        +           VV +  G H   N L  
Sbjct: 230 SRKIRTYGFSESADIRATEVLHQGLSMH---FNVKANDLPEFSVVLNQPGKHNVLNALAA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           + +   L   +++  KAL+ F     R + Y           + + Y  +P  ++A +S 
Sbjct: 287 ITVALELDVSIESIQKALAGFGGVGRRFEVYPSRSIGHKNVTLVDDYGHHPTELEATLST 346

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKD 416
                P        VL         ++    +  + L   ++     V+ +G   +A  D
Sbjct: 347 ARMAFPEK----RLVLVFQPHRYSRTRDLFDEFVQALQHADLLVLLDVYPAGEAPIAAFD 402


>gi|290969170|ref|ZP_06560695.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290780676|gb|EFD93279.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 454

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 89/290 (30%), Gaps = 29/290 (10%)

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + EL    L     LT  +    AVI  I P HL     +E  ++AK  IF   E T T
Sbjct: 163 AVAELSSFQL----ELTSSLHAVGAVILNITPDHLDRHHTMEAYSAAKERIFSNQEATDT 218

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
             LNYDD     ++A+     +         +   ++  +     + +   +        
Sbjct: 219 AVLNYDDDRVRNMQARRKGKVVFFSTQGEVPEGTFYKDHQLMLRHDGTDTLICRDSD--- 275

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
                 G H  QN L  + + + +   +      L  F   E R ++ R           
Sbjct: 276 --LQLFGAHNIQNCLAAVLLATAVAIPLPVIRSVLKRFRGVEHRLEKVRVLQGVP---YY 330

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
           ++S   N  +   A+           G  I + G     G    +      ++ +   + 
Sbjct: 331 NDSKGTNVDASIKALEAF-------SGHLILIAG-----GHDKMTPLDAFMKLAAR-KVD 377

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSE---TMDGLFLFIQSSLV-DGDVVV 448
            + L G        A  ++           M+   +  +        VV+
Sbjct: 378 TLILVGESADRFAAAAKKAGVRDIRNVGYNMEKAVMTARKLARPPQQVVL 427


>gi|15602794|ref|NP_245866.1| hypothetical protein PM0929 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721249|gb|AAK03013.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 94/314 (29%), Gaps = 21/314 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + D+ + E                   P   +I  I   H   F  ++ I      +   
Sbjct: 154 ESDYFVIEADEYDTAFFDKRSKFVHYNPKTLIINNIGFDHADIFDDLKAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I    ++   +       A      +S  +    D      +   + +   V  
Sbjct: 214 MPASGRILSVANEPNVK-------ATLDMGCWSQQQFLGQDQDWYAERISHDCTQFGVFY 266

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           QG+ M  V+  +      +    L  ++       +  +A           +R       
Sbjct: 267 QGEKMAEVYWNVVGQHNMH--NALMAIAAAHHVGISIAEACQALATFISPKRRLEVKGQV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +      +   ++ +     G G RI  + +             ++A  L
Sbjct: 325 NGITVYDDFAHH---PTEILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDEIAPAL 381

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                 +V+L     +   + D + + +    ++  +D L   I       D ++V  SN
Sbjct: 382 GRA--DNVFLFQPENIGWDVVDIVSQCVQPAVWNMNLDKLVEMIADEAKPTDHILV-MSN 438

Query: 454 SCGFYRLINLLLEE 467
              F  +   LL++
Sbjct: 439 GS-FGGIHQKLLDK 451


>gi|322383208|ref|ZP_08057019.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152477|gb|EFX45263.1| UDP-N-acetyl muramate-alanine ligase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 122/393 (31%), Gaps = 29/393 (7%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA LVV +T +      +         +L     LA     R     IA+ G+ GKTTT 
Sbjct: 64  GADLVVYSTALPKDNVEIVAAEARNIPILHRSQMLARLMNER---KGIAVAGAHGKTTTS 120

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M+ + +         I               +  +   G  E  ++   E         
Sbjct: 121 SMIALVMEKCGADPTYIIGGEI--------MNIGSNAKAGTGEYVVAEADESDGTFLQYY 172

Query: 184 PHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           P +A++  I   HL N+    E +  A A+    ++  G   +  DD++   +     + 
Sbjct: 173 PTLALVNNIEADHLENYGGNFENLKKAYAQFLSQVKPGGKAIVCKDDAYIREMIPYVESE 232

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
            I    ++G   +AD+Q         + S+  +       ++     G H   N L TL 
Sbjct: 233 VI----TYGIGSDADYQAVDIHLGDRKVSFSVLYKGENLGKIELSVPGKHNVCNALATLI 288

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           I        D    A+  FH  + R +      +               A++ AA +   
Sbjct: 289 ICLEAGLTFDQVAAAIHEFHGAKRRFQVMGEINDILIIDDYAHHPTEISATISAAKATGK 348

Query: 362 QI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           +I                       GE  +    D+        I      G     L D
Sbjct: 349 RIIVVFQPQRYTRTFFLFEQFSRCFGEADEVIITDIYSPAGEKQIE-----GVSSAKLVD 403

Query: 417 ALPRSIHV--HYSETMDGLFLFIQSSLVDGDVV 447
            + ++ H    Y    + +   +   +  GD+V
Sbjct: 404 MIRQNSHANAEYMPKSEDVLAHLIDHVKPGDLV 436


>gi|171913321|ref|ZP_02928791.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 457

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 102/350 (29%), Gaps = 39/350 (11%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++  A R   +   +AITG+ GKTTT E++    +              + G  L+  
Sbjct: 107 MGEIEFAWRPIKEVPTVAITGTNGKTTTTELMERMFN----GCGHRTIACGNYGHALSEV 162

Query: 155 RMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +  +  D    E+    L          RP +AV    AP HL  +   E   +AK  I
Sbjct: 163 AVSGETYDLLTVEVSSFQL----ETITSFRPRVAVWLNFAPDHLDRYPDNEAYFAAKKRI 218

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
           F+ +       +   +   EL             ++      ADF L   +       + 
Sbjct: 219 FDYMTPNDVAIIRAGEPLGEL-------QPRVVTFTTEPDVEADFMLYHDRILFRGEKIA 271

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                            H  +N +  L    ++    +  ++ LS + P      R    
Sbjct: 272 RVSD-------LPLHERHNIENQMAALAAGWVMGLAFEDMLEGLSGYEP---ARHRCEVV 321

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                 + I++S   N  +++  +           G            G+     +    
Sbjct: 322 SVVNGRSYINDSKATNLHALETCLKSQDAPVVLIAG------------GKEKGLDYSPFR 369

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
            +++   ++ +   G     L       +    + ++             
Sbjct: 370 SLITE-KVTALVTIGEIADKLSALFSDLVPCRQAPSVVAAVEIATQLAAP 418


>gi|125623755|ref|YP_001032238.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|158512796|sp|A2RJQ3|MURD_LACLM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|124492563|emb|CAL97506.1| MurD protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070524|gb|ADJ59924.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 449

 Score = 43.7 bits (101), Expect = 0.070,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D  + EL    L  I       RP IA+IT +  AHL      E   +AK  I E +  
Sbjct: 161 TDTLVMELSSFQLMGID----TFRPKIALITNLFSAHLDYHGSQEAYEAAKWRIQENMTA 216

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              + LN++      L  K+ A  +              + +       +  +  + +  
Sbjct: 217 DDFLILNFNQEKCRKLADKTKATVLA----------FSTKEKVSGAYVNEGKIYFKDEFI 266

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H  +N L  +    +  A+ +  ++ L+ F   + R    +        
Sbjct: 267 MEASELSLPGDHNLENALAAIVASKLRGAENEAIVEVLTSFAGVKHRL---QYLGEIDGR 323

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            + ++S   N  + + A+S             + +L    + G   +    DL       
Sbjct: 324 KVYNDSKATNILATQKALSGFDNSK-------LWLLAGGLDRGNGFEDLEKDL------E 370

Query: 400 NISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           ++  + + G     L+    + +I V  S+ +      I      GD +++
Sbjct: 371 DLKGMVVFGQTADKLRLMAEKLNIPVFASQNVATALKEIMPQTQVGDTILL 421


>gi|284041319|ref|YP_003391249.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Spirosoma linguale DSM 74]
 gi|283820612|gb|ADB42450.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Spirosoma linguale DSM 74]
          Length = 342

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 46/174 (26%), Gaps = 22/174 (12%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI---APQEA-FFA-IKGPHYDGHDFILH 59
           +T   +   + G   G      + G++     I    P +  F + +K   +    +   
Sbjct: 3   FTVKQIATLLGGEVAGNDT-LAITGLA----KIEEGKPGDISFLSNLKYEPF---LYTTQ 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
           A       V+V+         LS  +  V++   A  +L      +       +      
Sbjct: 55  A-----SAVIVDRSFQPKKPVLS-SLIFVENSYSAFTQLLEEYYKQLSFAKAGVEQPSYV 108

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
               ++                    ++          V  +  I +  + H G
Sbjct: 109 GEGCQIGDQIYRGAFSYIGQNCRIGRNV---KIHPHAYVGNNVCIGDNTIIHPG 159


>gi|326390736|ref|ZP_08212290.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325993273|gb|EGD51711.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 429

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 8/79 (10%), Positives = 20/79 (25%), Gaps = 6/79 (7%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLF 436
           G L       + +++       +  +         A           V   E ++    +
Sbjct: 335 GMLKDKDTQKMLDIIVPEA-DIIITTTPISERAYKASELAERIEKEKVIAIENIEEAVKY 393

Query: 437 IQSSLVDGDVVVVKSSNSC 455
                 + D+V+   S   
Sbjct: 394 ALDIAKEEDMVLFCGSLYM 412


>gi|237805363|ref|ZP_04592067.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331026470|gb|EGI06525.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate
          ligase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 47

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 15/29 (51%)

Query: 20 GIVPQGFVNGISIDSRSIAPQEAFFAIKG 48
                 +  +++DSR++ P + F A+ G
Sbjct: 19 HTDRDPLIRELTLDSRNVRPGDLFLAVPG 47


>gi|297199066|ref|ZP_06916463.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
 gi|197715981|gb|EDY60015.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces
           sviceus ATCC 29083]
          Length = 472

 Score = 43.7 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 64/389 (16%), Positives = 113/389 (29%), Gaps = 44/389 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +AITG+ GKTTT +ML   L +         +   +IGV L  A +
Sbjct: 105 ELAWRLRGPDAAPWLAITGTNGKTTTTQMLASILKAAGLR----TAAVGNIGVSLLDAVL 160

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
             +  D    EL    L         +R H A +  +AP HL     +E  A+ K  I+E
Sbjct: 161 GDEQYDVLAVELSSYQLHWA----PSLRAHSAAVLNLAPDHLDWHGSMEAYAADKGRIYE 216

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
           G        +    +   + +A          ++ G    +   + +          +  
Sbjct: 217 GNRVACVYNVADKATEDLVREADVEEGCRAIGFTLGTPGPSQLGVVEGILVDRAFVEDRH 276

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              + +  V                         V        +        +      +
Sbjct: 277 KNAQELAEVSDVNPPAPHNIANALAAAALARAFGVPARAVRDGLRDFTPDAHRIS-HVAD 335

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +D+S   N  + +A+++    I     G                 +F   +A+ 
Sbjct: 336 VDGVGYVDDSKATNTHAAEASLAAYESIVWIAGGL------------AKGATFDELVAKS 383

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVV 447
                +  V L G     +++AL R         +D                  V GD V
Sbjct: 384 AKR--LRGVVLIGQDRALIREALARHAPEVPVVDLDRTDTGAMLAAVQEASRLAVAGDTV 441

Query: 448 VV---KSS---------NSCGFYRLINLL 464
           ++    +S             F   +  L
Sbjct: 442 LLAPACASMDMFANYNKRGDAFAEAVREL 470


>gi|332706478|ref|ZP_08426539.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
 gi|332354362|gb|EGJ33841.1| UDP-N-acetylmuramate--L-alanine ligase [Lyngbya majuscula 3L]
          Length = 515

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 68/415 (16%), Positives = 127/415 (30%), Gaps = 60/415 (14%)

Query: 68  VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +            L  P+F   D+L AL +             IA+ G+ GKTT
Sbjct: 116 VICSTAINPLNSEYQAALKLGCPIFHRSDLLAALIE---DYYS------IAVAGTHGKTT 166

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I          +       +    + E   S           
Sbjct: 167 TSSLIGYLLWQAGCDPTMIIGGEVD---AIGGNARLGNGPLLVAEADES-----DGSLVK 218

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   I V+T I   H  ++  +EE+        +  +                       
Sbjct: 219 LSAEIGVVTNIELDHPDHYQKLEEVVEIFQTFAKRCKNLVGCIDCETV---------RSQ 269

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
           L     YS  +   AD+ +      +  +     +       +    +G H   N L  +
Sbjct: 270 LKPNISYSLRRDMGADYSVDDVTYEANGTTARVWEGNQVLGRLELKLLGKHNLSNALAAV 329

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +   L  + +     ++ F   + R             + +D+   A+  S   A    
Sbjct: 330 AVARNLGLEFEAIASGIASFEGAKRRF---ELRGKCNDISFVDDY--AHHPSEIQATLAA 384

Query: 361 SQISPHGEGRRIAVLG------DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF----- 409
           ++I  + + R IA+         +  + E S SF         L  IS ++ +G      
Sbjct: 385 ARIQVNADQRIIAIFQPHRYSRTLRFLPEFSVSF-----SNADLVVISDIYSAGEPDLGE 439

Query: 410 -HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLI 461
                L  A+      VHY  T++ +  F+   L  GD+ +       G   ++I
Sbjct: 440 ISGENLYQAIASNHKDVHYQPTLESVVEFLNQILYPGDLALF---LGAGNLNQII 491


>gi|300935900|ref|ZP_07150856.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
 gi|300458919|gb|EFK22412.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli MS 21-1]
          Length = 445

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 117/375 (31%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 93  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESNFFVIEADEY 150

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 151 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 210

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 211 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 263

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 264 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 319

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 320 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 372

Query: 405 WLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L         + + +   +   H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 373 FLLQPAHIPWQVAEVVEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 430

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 431 QKLLDGLAKKAEAAQ 445


>gi|332749822|gb|EGJ80235.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri 2747-71]
 gi|333011221|gb|EGK30635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Shigella flexneri K-272]
          Length = 381

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 63/375 (16%), Positives = 115/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 29  VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 86

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 87  DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 146

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 147 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 199

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 200 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 255

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 256 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 308

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +   GD ++V  SN  GF    
Sbjct: 309 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIH 366

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 367 QKLLDGLAKKAEAAQ 381


>gi|110680531|ref|YP_683538.1| UDP-N-acetylmuramate--L-alanine ligase [Roseobacter denitrificans
           OCh 114]
 gi|123361696|sp|Q163J1|MURC_ROSDO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|109456647|gb|ABG32852.1| UDP-N-acetylmuramate--alanine ligase [Roseobacter denitrificans OCh
           114]
          Length = 468

 Score = 43.7 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 124/411 (30%), Gaps = 54/411 (13%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           I  A      +V+ +     +    +    G+  V  A   L    RL+S    IA+ G+
Sbjct: 68  IEDAE----VIVISSAIKPGNAELDAARARGLPIVRRA-EMLGELMRLKSN---IAVAGT 119

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L +           N  I           + ++ + E   S      
Sbjct: 120 HGKTTTTTMVATLLDA---GEFDPTVVNGGIIHAYGSNARKGEGEWMVVEADES-----D 171

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
              + +   IA++T I P H+ ++   + +     +    +   G      D    + L 
Sbjct: 172 GTFNRLPATIAIVTNIDPEHMEHWGDFDTLRQGFLDFVSNIPFYGVAVCCTDHPEVQALV 231

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME---VQLQGKSMEVVHHGIGYHMA 293
            K        + ++G +  AD +    +     ++ +                  G H  
Sbjct: 232 GKITDR---RVITYGFNAQADVRAVNLRYAGGVAYFDVALQAEGTVIEGCSLPMPGDHNV 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  + +   L    +    AL+ F     R  R            I + Y  +P  +
Sbjct: 289 SNALSAIAVARHLGMKAEVIKTALAAFGGVNRRFTRVGEIDG----VTIIDDYGHHPVEI 344

Query: 354 KAAISVLSQ---------ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            A +    Q           PH   R  ++  D C     +               I+ V
Sbjct: 345 AAVLKAARQATEGRVIAVHQPHRYSRLSSLFDDFCACFNDADV-----------VGIAEV 393

Query: 405 WLSGFHV------LALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVV 447
           + +G           L   L R  H H    +  D L   ++     GD+V
Sbjct: 394 YAAGEDPIPGAGRDDLVAGLIRHGHRHARAVVGEDDLERLVREQTRPGDMV 444


>gi|313791784|gb|EFS39895.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA1]
 gi|313802129|gb|EFS43361.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL110PA2]
 gi|313838461|gb|EFS76175.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL086PA1]
 gi|314963082|gb|EFT07182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL082PA1]
 gi|315077546|gb|EFT49604.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA2]
 gi|327452866|gb|EGE99520.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL092PA1]
          Length = 471

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 59/403 (14%), Positives = 127/403 (31%), Gaps = 45/403 (11%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL------NKLAVAARLRSKATIIAITGS 116
            GA  VVV++ +      L      V+     L        LA     R     ++I G+
Sbjct: 73  AGARTVVVSSAIRPDNPEL------VEAHRLGLRIWHRSAALAALMLGREG---VSIAGT 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  M+   L       + +   +        ++      +  + E   S    ++
Sbjct: 124 HGKTTTTGMVATMLDCAGADPSYVIGSSLA---ATGMSSHLGGGEAFVVEADESDGSFLQ 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           + + +      V+T +   HL N+   +        +     +   +  N DD     L 
Sbjct: 181 YPSQI-----VVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELA 234

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  + G   + ++G+S+ A+ +L         +   +        +     G +   N 
Sbjct: 235 CRLESTGTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNA 294

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
                + S+L       +  ++ F     R +      +      + + Y  +P  ++A 
Sbjct: 295 AAAYCVGSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRAT 350

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--------- 407
           +    ++     G+   +      +   ++ F  +    L+L     V +S         
Sbjct: 351 LGAARRV---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDP 405

Query: 408 --GFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             G     + DA +       Y      L   +   +  GD+V
Sbjct: 406 IPGVTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|254673378|emb|CBA08656.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 210

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETM 430
             +LG M +  + +                  V+L G     ++  L    +++    T+
Sbjct: 111 FVILGGMGKGQDFTP------LRDALAGKAKGVFLIGVDAPQIRRDLDGCDLNMTDCATL 164

Query: 431 DGLFLFIQSSLVDGDVVVV 449
           +       +    GD+V++
Sbjct: 165 EEAVQKAYAQAEAGDIVLL 183


>gi|119383341|ref|YP_914397.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
 gi|158512585|sp|A1AZK7|MURD_PARDP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|119373108|gb|ABL68701.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Paracoccus
           denitrificans PD1222]
          Length = 466

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 124/426 (29%), Gaps = 48/426 (11%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIA 112
           G   ++ +   +  +     PV            +D+       A A   R      +IA
Sbjct: 66  GISALIAS-PGIPHLYPKPHPVIARAYALGVPVDNDIGLFFRSFATAEWERFDTTPRVIA 124

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           +TGS GK+TT  ++   L               +IG  +       D +  + EL     
Sbjct: 125 VTGSNGKSTTTALIHHILKE----TGRPTQIGGNIGTGVLSLDPAHDGEVVVLELSSYQT 180

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
              R LT    P +AV T ++P HL    G+    +AK  +F        +    +    
Sbjct: 181 DLARALT----PDVAVFTNLSPDHLDRHGGLGGYFAAKRRLFAEGGPDRAVIGVDEVEGR 236

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
            L            +      +  +                 + +  +   +    G   
Sbjct: 237 YLAGQLGMGAADDRVIRVSSGQKLEGFGWSVFARKGYLAEYRKGRQVASIDLRGIQGLPG 296

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N        +   A      +    FH  +G   R +     G    +++S   N  +
Sbjct: 297 AHNHQNACAAYAAARAVGIAPREIERAFHSFQGLPHRSQTVAEIGGVAWVNDSKATNVDA 356

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
              A++   +I          + G M + G + ++    L  V+        +L G    
Sbjct: 357 AAKALAAFPRIR--------WIAGGMGKDGGI-EALAPCLGPVVKA------YLIGHSAR 401

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRL 460
                + +       ETM+       +    G+ V++    +S             F  L
Sbjct: 402 DFALQIGQ-TPYEIVETMEQAVARAAAEAQPGETVLLAPAAASFDQYPNFEKRGEHFTAL 460

Query: 461 INLLLE 466
           +  L  
Sbjct: 461 VKALQA 466


>gi|303231404|ref|ZP_07318138.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514000|gb|EFL56008.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 435

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 92/300 (30%), Gaps = 20/300 (6%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD+ + E     LG +   T++V P ++VIT +   H +            A+   G+
Sbjct: 134 QGVDYAVVEA---GLGGLLDSTNVVTPVVSVITNVTLDHQAYCG---NTVEEIAKHKAGI 187

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K G   +         +  ++       +Y F K    D +         Q      + 
Sbjct: 188 IKEGVPVVTAAQEGPLKVIEETAEEKHAPLYVFNKKFGIDSRSV---VPGGQLITVSAIG 244

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                +     G H + N+   L  V ++    D   +                      
Sbjct: 245 APPAMLFTTMAGIHQSVNLACALQAVRLVMEHDDAISEETMREGFARATWAGRFEIKKTL 304

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHIDLAEV 395
             T I +  +    +    ++         +   +A+L D  EMG + +       +  V
Sbjct: 305 DRTFIFDGAHNAAGAESFGMTYHELFGDTPKTMVMAILSDKDEMGIIREVVKPKDTVIAV 364

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSS 452
            +    + V         L + + + +    +   +++         S  DGD++VV  S
Sbjct: 365 AAPTPRTEV------PEKLVETVRQCVKGVVAQTEDSVSSALDLALQSTQDGDIIVVCGS 418


>gi|225021927|ref|ZP_03711119.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945314|gb|EEG26523.1| hypothetical protein CORMATOL_01959 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 477

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 120/391 (30%), Gaps = 33/391 (8%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +    +IPV    D    L +L       + +T + I G+ GKT+T  M  +A+
Sbjct: 83  DNPELVAAREHNIPVIRRSD---LLGELM------TGSTQVLIAGTHGKTSTTSMAVVAM 133

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            +     +       +                 + E   S    +R+      P IAV+T
Sbjct: 134 QAAGMDPSFAIGGQLNK---AGTNAHQGSGHCFVAEADESDASLLRYS-----PDIAVVT 185

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I P HL  F   E       +    L  TG + +  DD     L  +         Y  
Sbjct: 186 NIEPDHLDFFHTPEAYFQVFDDFAARLTDTGVLVVCLDDEHAAALGERQKTKVTVRGYGS 245

Query: 251 G-----KSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
                     A   +       + S   +++  + +EV     G HM  N    L    +
Sbjct: 246 AAAAERHPDIAYTVVESVAVADQISHAHMRVGEREVEVAMQIPGTHMVLNAAAALTAGVL 305

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCA--LNQGFFTLIDESYNANPASMKAAISVLSQI 363
              DV    + +S F     R + +      +     + D+  +          +   ++
Sbjct: 306 AGGDVAALAQGISEFSGVRRRFEFHGAVAGGDYRGVEVYDDYAHHPTEVRAVLTAAREKL 365

Query: 364 SPHGEGRRIAVL-GDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKD 416
           +  G G+ I V    M    +   +   +   +     +  ++ +      G     + D
Sbjct: 366 AARGSGQVIVVFQPHMYSRTQEFAAEFAEALSLADAAVVLDIYGAREQPHDGITSQLIID 425

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +     V +      +   +      GD+V
Sbjct: 426 RMTN--KVVHQPNFSLVPQTVAELAHPGDMV 454


>gi|113477459|ref|YP_723520.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
 gi|110168507|gb|ABG53047.1| UDP-N-acetylmuramate--L-alanine ligase [Trichodesmium erythraeum
           IMS101]
          Length = 556

 Score = 43.7 bits (101), Expect = 0.074,   Method: Composition-based stats.
 Identities = 59/439 (13%), Positives = 137/439 (31%), Gaps = 69/439 (15%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T +        +   L  P+F   D+L AL +             IA+ G+ GKTT
Sbjct: 138 VVCSTAINTTNSEYKAAVELGCPIFHRSDLLAALIQ---------DYQSIAVAGTHGKTT 188

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         +                     + + E   S           
Sbjct: 189 TSSLIGFMLLEAGLDPTIVIGGEVD---AWGGNARLGRSPYLVAEADES-----DGSLVK 240

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +  HI V+T I   H  ++  ++++        E         L        + +     
Sbjct: 241 LSAHIGVVTNIELDHPDHYDSLDQVVEIFQVFKEN-----CQNLVGCIDCSTVREKLQPT 295

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
           +     +        D    +            +      ++    +G H   N L  + 
Sbjct: 296 ISYSINFESDAHYKVDCVHYQSNVTL---ARVWEKGQILGQLKLRLLGKHNLSNALAAVA 352

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
           +  +L  +  T   A+++F     R +       +    +  + Y  +P+ + A ++  +
Sbjct: 353 VGRLLGLEFSTITSAIALFEGAHRRFEY----RGECNGIVFVDDYAHHPSEINATLAAAN 408

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHID-----------------LAEVLSLYN---- 400
                    +  +      +   + S  I+                 ++E    +N    
Sbjct: 409 LQKNQELSPKPHISTKKLTLKTQNNSLKIERVVAIFQPHRYSRTQAFISEFAQSFNDADM 468

Query: 401 --ISHVWLSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV-VVVK 450
             +++++ +G       +   + +A+ R    V+Y  ++D +  F+   L  GD+ + + 
Sbjct: 469 VIVTNIYSAGESSEGQINSQQVAEAISRYHRQVYYRSSLDSVSKFLYQVLKPGDLAIFLS 528

Query: 451 SSNSCGFYRLINLLLEEFP 469
           + N     ++I  L+  + 
Sbjct: 529 AGN---LNQIIPELMARYQ 544


>gi|294791068|ref|ZP_06756226.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
 gi|294458965|gb|EFG27318.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Scardovia inopinata F0304]
          Length = 540

 Score = 43.3 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 18  SIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVAS 77
                       IS D+R +      F  KG  +    ++  A Q G    V   D    
Sbjct: 48  WPAETAGMTFTRISYDTRQVDDHTLLFC-KG-RFH-SSYLDKADQDGLPCYVAENDYSQV 104

Query: 78  IGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             ++      V D+  A++ L+ A   R  A  I +
Sbjct: 105 TRAIG---IIVTDIKKAMSLLSSAFY-RYPAKEITV 136


>gi|261405378|ref|YP_003241619.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281841|gb|ACX63812.1| UDP-N-acetylmuramate/alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 458

 Score = 43.3 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 72/413 (17%), Positives = 141/413 (34%), Gaps = 48/413 (11%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASI------GSLSIPVFGVDDVLGALNKLAVAARLRS 106
           GH        +GA LVV +T +            L+IPV         L++  + ARL +
Sbjct: 55  GHT-AEQV--QGADLVVYSTALSKDNVERVEAEKLNIPV---------LHRAQMLARLLN 102

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
           +   +A+ G+ GKTTT  M+ + +         I               +  +   G  E
Sbjct: 103 ERKGVAVAGAHGKTTTSSMIALVMEECGVDPTFIIGGEI--------MNVGTNAKAGEGE 154

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFL 225
             ++   E         P + V+  I   HL N+      + +A  +    ++  GT  +
Sbjct: 155 HVVAEADESDGSFLQYHPWLGVVLNIEADHLENYEGDFNRLKAAYVQFLSQIKADGTAVV 214

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-SWMEVQLQGKSMEVV 284
             DD+  + +           + ++G   +A++            S+  +    +   V 
Sbjct: 215 CADDNNIQAILPDL----KCNVTTYGIHADAEYTATNLVLGDRHVSFTMLHNGMELGTVE 270

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N + T+             ++A+  F+  + R +     L +    L+ +
Sbjct: 271 LSVPGKHNVYNAMATVICCLKSGISFGAIVEAIVKFNGAKRRFQ----VLGEAEGILVID 326

Query: 345 SYNANPASMKAAISV--------LSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEV 395
            Y  +P  ++A IS         ++   P    R   +L       GE  +    D+   
Sbjct: 327 DYAHHPTEIEATISAAKATGKRIIAVFQPQRYSRTFFLLDAFSRAFGEADEVIITDIYSP 386

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                I     SG  V  +      +    Y  T + +   ++  + +GD+V+
Sbjct: 387 AGEKQIEG-ISSGKLVELIVQ--NSNAGARYLPTKEDVLSDLKGRVKEGDLVL 436


>gi|153873419|ref|ZP_02002009.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Beggiatoa sp. PS]
 gi|152070116|gb|EDN67992.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Beggiatoa sp. PS]
          Length = 186

 Score = 43.3 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 11/122 (9%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R     N+      ++S   N  +  AAI  L        G+ I + G   +  +    
Sbjct: 47  HRCAWVANKKNIDFFNDSKGTNVGATIAAIQGL-----EKPGQIILIAGGDGKGADFGP- 100

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 + +   +     L G     + + L  ++ V+Y++ M        +    GD V
Sbjct: 101 -----LKDVINQHCRACVLIGRDGPLIANVLADTVPVYYAKDMIDAVQKSATIAQSGDAV 155

Query: 448 VV 449
           ++
Sbjct: 156 LL 157


>gi|254419559|ref|ZP_05033283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
 gi|196185736|gb|EDX80712.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Brevundimonas sp.
           BAL3]
          Length = 467

 Score = 43.3 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 62/371 (16%), Positives = 116/371 (31%), Gaps = 41/371 (11%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKAT------IIAIT 114
           A LV+       +  +   P + VD    A    +  + + AR            +IAIT
Sbjct: 67  AALVLS----PGAPLTHPKPHWTVDKARAAGVPVVGDIELFARALDALPEGRRPWVIAIT 122

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GK+TT  ++   L     T         +IG+ +     P      + E+    L  
Sbjct: 123 GTNGKSTTTALIGWVLQQAGLTVHVG----GNIGIGVLALPEPTPGAVYVIEVSSYQLD- 177

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
              LT    P  A++T I+P HL    G+E   +AK  IF+   +    ++  DD +   
Sbjct: 178 ---LTTGFAPDAAILTNISPDHLDRHGGMEGYVAAKRRIFQ--SRKTAPYVGIDDPYGFA 232

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  +  A G        +    D          +        +   +  +          
Sbjct: 233 IWQELKAEGRAVDPVSVERPMDDD--LGMYLMDDWLTYNAGGRPAPIVDLSKARSLPGRH 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N          +          +       G   R     + G    I++S   N  + +
Sbjct: 291 NAQNAAFAFLAVNDMGIPEETVVKGLLTFPGLAHRMEAVGHIGHVRFINDSKATNADAAR 350

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A++   ++     G+     G + ++ +L                ++  +L G    A 
Sbjct: 351 QALASYPKVFWIAGGKPKD--GGIDDLADLFPR-------------VAKAYLIGEAAEAF 395

Query: 415 KDALPRSIHVH 425
              L  + HV 
Sbjct: 396 AATLGDTPHVI 406


>gi|330815441|ref|YP_004359146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           gladioli BSR3]
 gi|327367834|gb|AEA59190.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           gladioli BSR3]
          Length = 503

 Score = 43.3 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 78/298 (26%), Gaps = 14/298 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           P  A +  I   HL    G E  A+AK  IF      
Sbjct: 176 DVWVLELSSFQLDSAESFA----PDAATVLNITQDHLDWHGGFEAYAAAKGRIFGPRTVR 231

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQG 278
                + +   F    A + A  + T      S+  D+            ++        
Sbjct: 232 VLNRGDAEVMKFVPPAAAADAPRVVTFGLDEPSREGDYGLARDNGINWLVEAVDRDGNDE 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                            +   L     L                     +    AL  G 
Sbjct: 292 PVSPRRRKAEAAAAPNLVSKRLMPADALRIRGLHNAANALAAFALARAIELPPAALLHGL 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDL 392
                E++     +    +  +        G  +A L  + +       G+        L
Sbjct: 352 REYRGEAHRVELIASLDGVDYVDDSKGTNVGATVAALDGLAQRTVLIAGGDGKGQAFAPL 411

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           A  ++ +    V L G     +++AL    + +    T++            GDVV++
Sbjct: 412 AAPVARW-CRTVMLIGRDAPLIREALAETGVPLVDHATLEAAVQAASMMAEPGDVVLL 468


>gi|309388991|gb|ADO76871.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Halanaerobium
           praevalens DSM 2228]
          Length = 449

 Score = 43.3 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 121/352 (34%), Gaps = 33/352 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMPV 158
             A  +S+A IIAITG+ GKTTT EML   L+ ++           +IG+P         
Sbjct: 100 EFAFRQSQAEIIAITGTNGKTTTTEMLAAMLADLEAENI---KAAGNIGIPFISLIDQLK 156

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + +  I EL    L          +  IA+    +P HL      +   +AKA IF+  +
Sbjct: 157 EKERVILELSSFQL----EAVKDFKAKIALYLNYSPDHLDRHQTEKNYQAAKANIFKNQQ 212

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            +    ++ DD +   LK K  A  +          +A  +          ++ + +   
Sbjct: 213 PSDFAIIDLDDPYLSELKNKLEAKVLTI--------SAKNEKADLIIQDNIAYYQKEKLK 264

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                  + +G H  +N         +     +    A   +     +  R     N+  
Sbjct: 265 LLDLSKINLLGKHNQKNAAFAALAAYLAGQKPEKIQLAAQNYKL---KAHRMEVIANKNN 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I++S   NP S   AI+ L       E   I + G      + S      + +    
Sbjct: 322 KLIINDSKATNPDSTLKAINSL-------EKDIILIAGGQDRKADFS------VLKSEIE 368

Query: 399 YNISHVWLSGFHVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  + L G +   L +    S   +   ETM          L    V+++
Sbjct: 369 KKVKTLILLGENKKQLANIFLDSKLKIIEVETMKTAVTEALKHLDSNSVLLL 420


>gi|126208913|ref|YP_001054138.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae L20]
 gi|126097705|gb|ABN74533.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 454

 Score = 43.3 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 90/320 (28%), Gaps = 27/320 (8%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI+          G+   +L  + E    +        ++A
Sbjct: 325 KGITVYDDFAHH-----PTAIAATIDALRGKVGKEQRILA-VLEPRSNTMKMGVHKEEIA 378

Query: 394 EVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
             L+  N   V+      + V  + D L +     +S  +D L   I       D ++V 
Sbjct: 379 PSLADANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDELVKMIVEEAKPTDHILV- 435

Query: 451 SSNSCGFYRLINLLLEEFPA 470
            SN   F  +   LL+   A
Sbjct: 436 MSNG-AFGGIHQKLLQALKA 454


>gi|160871689|ref|ZP_02061821.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
 gi|159120488|gb|EDP45826.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Rickettsiella grylli]
          Length = 452

 Score = 43.3 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 57/372 (15%), Positives = 117/372 (31%), Gaps = 21/372 (5%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A++G+ GKTT   +L+  L++        G     +      + 
Sbjct: 93  QWLAAHVLRNYH--VLAVSGTHGKTTVSSLLSWILAAAGLN---PGFLIGGLAKNFDHSA 147

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                DF + E                   P   ++  +   H   F  ++ I    + +
Sbjct: 148 CLGKGDFFVIEADEYDTAFFDKRSKFIHYHPKTLILNNLEFDHADIFPNLDAIKMQFSYL 207

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G I     D   + + ++ +       Y+  +            +     +  
Sbjct: 208 LRTVPSQGLIICPQRDRNIQQVLSQGYW--TPIEYTGNEKNKEVIWHTALLKADASQFEI 265

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                K  EV    IG H A N +  +     +      AI AL+ F   + R + Y+  
Sbjct: 266 YYKNSKQGEVHWSLIGEHNAANAISAVAAAHHVGIHPQKAIAALNQFQGIKRRLEIYKKI 325

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
                   + + +  +P ++    + LS +      +R+ V+ +       S      L 
Sbjct: 326 NG----ITLYDDFAHHPTAI---AATLSGLRKKIGKKRLLVILECGTHTMRSNRHQKTLG 378

Query: 394 EVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             L       +WL         + L   S+ +   +++D +   +       D +V+  S
Sbjct: 379 PSLQEA--DKLWLLWPKQNRNNNILQNISVPLSLCDSVDEIVQEVIKVTQTSDHIVI-MS 435

Query: 453 NSCGFYRLINLL 464
           N  GF  +   L
Sbjct: 436 NR-GFDNIHKKL 446


>gi|315084589|gb|EFT56565.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA2]
          Length = 471

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 55/397 (13%), Positives = 116/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++  +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRVTLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|78183609|ref|YP_376043.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
 gi|109892750|sp|Q3B0X8|MURC_SYNS9 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|78167903|gb|ABB25000.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CC9902]
          Length = 468

 Score = 43.3 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 128/409 (31%), Gaps = 54/409 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII------AITGSVGKT 120
           +VV++T +  +   L       ++     ++LA+  R    A +I      A+ GS GKT
Sbjct: 77  VVVISTAIPDTNPEL-------ENARA--HQLAIWHRSDLLAALIDQQASIAVAGSHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLT 179
           TT  ++T  L    +    +        VP   +          + E   S         
Sbjct: 128 TTSTLITTLLIEAGEDPTAVIGGV----VPCLGSNGHSGQGRLLVAEADES-----DGSL 178

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
              RP + VIT +   H  ++ G++++ S       G E+    + +          A  
Sbjct: 179 VKFRPSLGVITNLELDHTDHYDGLDDLISTLQRFGGGCERLIANYDDPILQEHFEPTAWW 238

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                + I         D      +     S +         +      G H   N    
Sbjct: 239 SNKQSENIAFAALPLQLDGDRCTARFYENGSAVG--------DFTLPMAGLHNLSNATAA 290

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           L    +     +  ++ L+       R               I + Y  +P+ ++A +++
Sbjct: 291 LAACRMEGIPFEALVEGLAQLQAPGRRFDLRGTWEG----RHIVDDYAHHPSEVRATLTM 346

Query: 360 LSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFH- 410
              +     SP     +  V          +Q F    AE L   +   ++ V+ +G   
Sbjct: 347 AQLMVSSGRSPLPSPPQRLVAVFQPHRFSRTQQFFEAFAEALQNCDALLLAPVYAAGEQT 406

Query: 411 -----VLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                  AL     +L   + +  +E ++ L   ++      D+V+   
Sbjct: 407 IPGVCSNALAQRIRSLRPDLEIEVAENLNQLTDLVKQRSRPDDLVLAMG 455


>gi|86282551|gb|ABC91614.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CFN
           42]
          Length = 452

 Score = 43.3 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 142/442 (32%), Gaps = 60/442 (13%)

Query: 33  DSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI--- 83
           DS ++        E F         GH     A   G A +VVV+T +  S   L     
Sbjct: 22  DSANVQRLREKGIEVFV--------GHR----AENLGDAEVVVVSTAIRKSNPELIAARE 69

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V  V  A   LA   R R     IAI G+ GKTTT  ++   L +       I   
Sbjct: 70  KLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGG 123

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +            + ++ + E   S           +   +AVIT I P HL ++   
Sbjct: 124 IIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPADVAVITNIDPEHLDHYGNF 175

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + +A  +  E +   G   +  D    + L  +     I    ++G++  AD + +  
Sbjct: 176 DAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKII---TYGENPQADVRFKNV 232

Query: 264 KQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +S  +V+++ +                G H   N    + + + L    +   K 
Sbjct: 233 RIDGTRSIFDVEIRRRRTGQRTELKGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKG 292

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS------QISPHGEGR 370
           L+ F   + R               I + Y  +P  +KA +           I+ H   R
Sbjct: 293 LASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIKAVLKAAREACKGRIIAVHQPHR 348

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSE 428
              +     E           L   +       +   G    +L   +    H    +  
Sbjct: 349 YTRLASLFEEFAACFNDADSILLAPVYAAGEDAI--EGVDSTSLVSRIKSGGHRDARFLS 406

Query: 429 TMDGLFLFIQSSLVDGD-VVVV 449
           + + L   +      GD VV++
Sbjct: 407 SAELLPEMVAEVAKPGDFVVLL 428


>gi|229817317|ref|ZP_04447599.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
 gi|229785106|gb|EEP21220.1| hypothetical protein BIFANG_02578 [Bifidobacterium angulatum DSM
           20098]
          Length = 484

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 56/364 (15%), Positives = 108/364 (29%), Gaps = 28/364 (7%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R    A  I ITG+ GKT+T EM +  LS+            + ++ + L+        D
Sbjct: 96  RTGKPAPWIGITGTNGKTSTTEMTSAMLSACGLDAPTAGNIASGNMSMSLSRCVTNPKHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    +         +    A IT IA  HL    G E  A+ KA++F  +++  
Sbjct: 156 ALCVELSSFQMHFTD----SLELDCAAITNIADDHLDWHGGRENYAADKAKVFHRVKRAL 211

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK-------NADFQLRKWKQCSEQSWMEV 274
               +      +  +A++     +  ++ G  +       +            E      
Sbjct: 212 VYNADDAVVTAKANEAETAEGCRRIGFTLGVPQAGQIGVADGWIVDMSGVASGEFGKPNR 271

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                    +    G      +   L  +++       + KAL         G R     
Sbjct: 272 LAPVGEFTHLAEPDGTIYPHLLADALTALALALGLGVDSGKALEALKSFAPGGHRIATVA 331

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   +     + +    A +V + IS   +G  + + G + + G   +      ++
Sbjct: 332 ATAPDEHGNVIRFVDDSKATNAHAVKASISSFAQGSVVWIAGGLAK-GSRFEDLVASQSK 390

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSET------MDGLFLFIQSSLVDG 444
            L         + G     + +A               +      M+            G
Sbjct: 391 ALRGA-----VIIGTDQAPMLEAFASQAPQIPLAVIDPSTPNEQVMERAVQEAGRMAQPG 445

Query: 445 DVVV 448
           DVV+
Sbjct: 446 DVVL 449


>gi|144898242|emb|CAM75106.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 339

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 25/113 (22%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFA---IKGPHY----DGHDFI 57
           +T   L +            G    + ID           A   I G  +    D   +I
Sbjct: 13  FTLAQLAEICGAELSQPQQSGQ---VVID----------VAALEIAGADHISFLDNRKYI 59

Query: 58  LH--AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
               A + GA +V      +A  G    P+    D   A   +A A   +   
Sbjct: 60  NAFTATKAGAVIV---HPDLAERGPAGTPLLLSKDPYRAYAMVAQAFYPQPAP 109


>gi|134280196|ref|ZP_01766907.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 305]
 gi|134248203|gb|EBA48286.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           pseudomallei 305]
          Length = 504

 Score = 43.3 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  ++ +    V L G    AL++AL    + +    T++       + 
Sbjct: 402 GDGKGQDFEPLAAPVARW-CRAVMLIGRDAPALREALADTGVPLAEHATLEAAVRAASTL 460

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 461 AQPGDAVLL 469


>gi|206602131|gb|EDZ38613.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospirillum sp. Group II
           '5-way CG']
          Length = 464

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 65/406 (16%), Positives = 123/406 (30%), Gaps = 59/406 (14%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGK 119
            VV++T +      L       IPV         AL+ +    R       +A+ GS GK
Sbjct: 68  AVVISTAISPENPELLEARRLGIPVVH----RGEALSGIMRGFRG------VAVAGSHGK 117

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF-GIFELGMSHLGEIRFL 178
           TTT  M+   L+       C+        VP       V      + E   S        
Sbjct: 118 TTTTSMIAHVLAHGGLDPTCVVGGR----VPGFGGNARVGKKNIFVAEADES-----DGS 168

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + PH+AV+T I   HL  +   +++ +A       +   G   +  DD     +   
Sbjct: 169 FLKISPHVAVVTNIDQEHLDYYQSFDQLKAAFERFLASVPPEGLAVVCLDDPELSNILPS 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCS-EQSWMEVQLQGKSMEVVHHGIGYHMAQNML 297
            +A      +++G + +AD             S+              +  G H   N L
Sbjct: 229 LNAP----HWTYGFNPSADVVGSDVSAEGLSTSFSVRLRGKDIGSFSLNIPGVHNVLNAL 284

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ-------GFFTLIDESYNANP 350
            T+ +      + +   +AL  F     R  +                 T I  +  A  
Sbjct: 285 ATIAVGHHFGLEAECVREALERFRGVGRRFTQVGEEGGIRIVDDYGHHPTEIGVTLAAAR 344

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--------LGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            +      V++         R  +        L D+  +GE+  +    +A +       
Sbjct: 345 QAYPDRRLVVAFQPHRFSRTRDLLSRFASAFQLADVLVLGEIYGAGESPIAGITGRRLFD 404

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +             +      +++     +   + + L  GD+++
Sbjct: 405 EI------------RVSFENEAYFAADQSEMIARLMTILKPGDLLM 438


>gi|269215879|ref|ZP_06159733.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Slackia exigua
           ATCC 700122]
 gi|269130829|gb|EEZ61905.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Slackia exigua
           ATCC 700122]
          Length = 487

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 113/415 (27%), Gaps = 41/415 (9%)

Query: 56  FILHAVQKGAGLVV----VNTDMVASIGSLSIPVF--GVDDVLGALNKLAVA----ARL- 104
           F    +++GA +V      +      I S  I  F    ++   A +++        R  
Sbjct: 62  FANACMERGARVVFDTFTFDERYDICIASPGISQFSRFYENAQAASSEIVSEVEFAWRES 121

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           RS +  +AITG+ GKTTT  +  + +     +         +IG     A      D  +
Sbjct: 122 RSDSRWVAITGTNGKTTTTTLTKLIVDEAGLS----AVAVGNIGDTCIEAVAADAADVFV 177

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E     L      T L  P  AV+  I P HL      E   +AK  ++  L  T  + 
Sbjct: 178 TEASSFQL----ASTVLFAPDAAVLLNITPDHLYWHMTFEAYVAAKKRVYANLAATAGVL 233

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSF---------GKSKNADFQLRKWKQCSEQSWMEVQ 275
                +       K  A      +S+         G S              +       
Sbjct: 234 AIDAVTDVSRACVKELASDPARGFSYVPLGCAAGLGSSMKDACGSENATFVHDGMLRICL 293

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                  V    +G     N    L       A                    R      
Sbjct: 294 GDEAIDLVSIDELGIKGDHNASNALAASCAALALGIEPETIRRALRAFSPLEHRMEPCGA 353

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +++S   N  +       L   +       + +LG     G    +    L E 
Sbjct: 354 VAGVACVNDSKATNVDA------TLKAFASFRGPSSLFLLG-----GHDKGTDLSPLVE- 401

Query: 396 LSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +      V   G       DA     +     E M+  F       V GD VV+
Sbjct: 402 AAKDGCKAVVCFGAAGRRFYDAFDGSGVRRVLVEHMEDAFDAALGLAVPGDTVVL 456


>gi|150388000|ref|YP_001318049.1| UDP-N-acetylmuramate--L-alanine ligase [Alkaliphilus
           metalliredigens QYMF]
 gi|189028968|sp|A6TJM2|MURC_ALKMQ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|149947862|gb|ABR46390.1| UDP-N-acetylmuramate--alanine ligase [Alkaliphilus metalliredigens
           QYMF]
          Length = 460

 Score = 43.3 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 119/390 (30%), Gaps = 32/390 (8%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             V  +         L IP+    D    L ++            IA+ GS GKTTT  +
Sbjct: 78  AAVKADNPERIRAEELGIPL---ADRAEMLGQIMKKY-----EKAIAVAGSHGKTTTTSL 129

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
           +++ +         +        V   L  +  ++  G  +  ++   E         P 
Sbjct: 130 ISLLMEYSNLDPTIL--------VGGELDEIGGNIKIGQSQHFITEACEYVESFLKFYPF 181

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           I +I  I   HL  F  IE I SA  +  + + K G +  +YDD+    +          
Sbjct: 182 IGIILNIDEDHLDYFKDIEHIKSAFKKFAQRIPKEGFLIASYDDAHVREISRDL----DC 237

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQ--SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            + ++G    + F     +   E   S+              +  G H   N L  +   
Sbjct: 238 HVITYGIKTKSQFMAHNIEFSFEGLPSFDVSFEGKTIGSFSLNIPGLHNVYNSLAAIATT 297

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES-----YNANPASMKAAIS 358
            +L  D     K ++ F     R                             A       
Sbjct: 298 YVLGVDPVAISKHITRFKGIHRRFDLLGEVKGAKVIDDYAHHPVEIRATLEAAKKYPHKK 357

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
           +     PH   R  A+L D  +      + H+ + ++ +        +   +   L + +
Sbjct: 358 IWCVFQPHTYSRTQALLKDFAK--SFYLADHVIITDIYAAREKDEGIV---NSQGLVNLI 412

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +     Y    + +  ++   +  GD+V+
Sbjct: 413 VQEHPAQYIGGFEEISRYLYDHIEAGDIVL 442


>gi|332978085|gb|EGK14823.1| UDP-N-acetylmuramate--L-alanine ligase [Desmospora sp. 8437]
          Length = 466

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 67/377 (17%), Positives = 128/377 (33%), Gaps = 42/377 (11%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IA+ G+ GKTTT  M+   +       A          V L          + + E   S
Sbjct: 110 IAVAGAHGKTTTSSMIAQTMEE---GGADPTYVIGGEVVSLGSNAKAGSSPYVVAEADES 166

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               + +      P IAV+T I P HL N+    E++  A       +++ G   L +DD
Sbjct: 167 DGTFLEYF-----PRIAVVTNIEPDHLENYEGSFEKLKEAYRRFLSQVKEDGVAILGWDD 221

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGI 288
            +   +     A     + ++   + AD+     +Q   ++   V  QG    +V  H  
Sbjct: 222 PYLPEIAGACRA----RVITYALDREADYTATHLQQVLNRTQFTVNYQGTPLGDVTIHVP 277

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L  + +        DT  + LS F   + R +     + +    L+ + Y  
Sbjct: 278 GRHNVANALAAVVVCLEAGLPFDTIAEGLSRFRGAKRRFQ----VIGEADGILVVDDYAH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV---LSLYNISHVW 405
           +P  ++A I+ L  ++    G          +    +     + +          I+ ++
Sbjct: 334 HPTEIRATINGLKALNRRIFGVFQP------QRYSRTHLLMEEFSRAFTEADELVITDIY 387

Query: 406 -------LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKSS---- 452
                  ++G     L   +  + +    Y  T + + L +      GD+V+   +    
Sbjct: 388 SPPGEPPIAGVTSERLAQMVRENSNPNTVYRATKEDVELHLLQHARPGDLVITMGAGDIW 447

Query: 453 NSCGFYRLINLLLEEFP 469
                  L+  L     
Sbjct: 448 RVAH--NLVPALKARQK 462


>gi|159030200|emb|CAO91092.1| murC [Microcystis aeruginosa PCC 7806]
          Length = 478

 Score = 43.3 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 60/409 (14%), Positives = 108/409 (26%), Gaps = 32/409 (7%)

Query: 68  VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +            L  P+F   DVL AL               IA+ G+ GKTT
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIA---------DYDSIAVAGTHGKTT 136

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I                     F + E   S           
Sbjct: 137 TSSLIGYVLLEAGLDPTIIVGGEVD---AWEGNARLGQGRFLVAEADES-----DGSLTK 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELLKAKSH 240
             P I VIT I   H  ++  + E+     E     +        +     F    + S 
Sbjct: 189 HAPKIGVITNIELDHPDHYQNLSEVIDTFHEFAHQCQILVACLDCDTIAEHFRPTISYSL 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  Y+  +       ++           +++++      + + +        L   
Sbjct: 249 DPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYLGLE 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V           K       +           +     L   +        K     +
Sbjct: 309 FAVIADAIATFAGAKRRFEHKGEANGITFIDDYAHHPSELLATLAAAKLKVEGKQYQRSI 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   PH   R  A L +       +    +         NI+HV  +G  V         
Sbjct: 369 AIFQPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAGEVNINHV--TGQQVAE--QVRKH 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCG-FYRLINLLLEEF 468
             + +Y   +  L  F+   L  GD+ +       G   ++I  +L  +
Sbjct: 425 HKNAYYHPELSSLGQFLLEILQPGDLALF---LGAGNLNQVIPEMLSHY 470


>gi|289426296|ref|ZP_06428042.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289426882|ref|ZP_06428608.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|295130334|ref|YP_003580997.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|289153461|gb|EFD02176.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK187]
 gi|289159971|gb|EFD08149.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           J165]
 gi|291375983|gb|ADD99837.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           SK137]
 gi|313764734|gb|EFS36098.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA1]
 gi|313772516|gb|EFS38482.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL074PA1]
 gi|313807246|gb|EFS45733.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA2]
 gi|313809752|gb|EFS47473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA1]
 gi|313815799|gb|EFS53513.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA1]
 gi|313818292|gb|EFS56006.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA2]
 gi|313820054|gb|EFS57768.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA1]
 gi|313823137|gb|EFS60851.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA2]
 gi|313825586|gb|EFS63300.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA1]
 gi|313827825|gb|EFS65539.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL063PA2]
 gi|313830661|gb|EFS68375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL007PA1]
 gi|313833881|gb|EFS71595.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL056PA1]
 gi|314915225|gb|EFS79056.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA4]
 gi|314918546|gb|EFS82377.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA1]
 gi|314919809|gb|EFS83640.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL050PA3]
 gi|314925476|gb|EFS89307.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL036PA3]
 gi|314931824|gb|EFS95655.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL067PA1]
 gi|314955980|gb|EFT00378.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL027PA1]
 gi|314958375|gb|EFT02478.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA1]
 gi|314960273|gb|EFT04375.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA2]
 gi|314968083|gb|EFT12182.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL037PA1]
 gi|314973663|gb|EFT17759.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL053PA1]
 gi|314976256|gb|EFT20351.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL045PA1]
 gi|314983535|gb|EFT27627.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA1]
 gi|314987723|gb|EFT31814.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA2]
 gi|314990202|gb|EFT34293.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL005PA3]
 gi|315085925|gb|EFT57901.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL002PA3]
 gi|315096283|gb|EFT68259.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL038PA1]
 gi|315098266|gb|EFT70242.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL059PA2]
 gi|315101043|gb|EFT73019.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL046PA1]
 gi|315108235|gb|EFT80211.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL030PA2]
 gi|327325919|gb|EGE67709.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA2]
 gi|327332208|gb|EGE73945.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL096PA3]
 gi|327442830|gb|EGE89484.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL013PA2]
 gi|327446201|gb|EGE92855.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA2]
 gi|327447816|gb|EGE94470.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL043PA1]
 gi|327451052|gb|EGE97706.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA3]
 gi|327453593|gb|EGF00248.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL083PA2]
 gi|328753085|gb|EGF66701.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL087PA1]
 gi|328753740|gb|EGF67356.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL020PA1]
 gi|328759170|gb|EGF72786.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA2]
 gi|328760584|gb|EGF74152.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL099PA1]
 gi|332675176|gb|AEE71992.1| UDP-N-acetylmuramate--L-alanine ligase [Propionibacterium acnes
           266]
          Length = 471

 Score = 43.3 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|314978259|gb|EFT22353.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA2]
 gi|315088657|gb|EFT60633.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL072PA1]
          Length = 471

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 118/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  ++
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLESI 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|124026491|ref|YP_001015606.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Prochlorococcus marinus str. NATL1A]
 gi|123961559|gb|ABM76342.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Prochlorococcus
           marinus str. NATL1A]
          Length = 469

 Score = 43.3 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 53/385 (13%), Positives = 114/385 (29%), Gaps = 51/385 (13%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP--LTLARMPVDVDFGI 164
               I ITG+ GKTT   ML   L          G+    +       +     ++++ +
Sbjct: 117 HIPSIGITGTNGKTTVTNMLNHILKLNNLNTDMGGNIGKALSKIALENMKNNNQELNWLV 176

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            EL    +      +  V P I + TT  P HL   + IE     K  + E         
Sbjct: 177 LELSSFQI----EGSPKVAPTIGIWTTFTPDHLERHNDIESYFKIKRSLLEKSSIRIYNS 232

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +   S       K   +G      + + +      + +    ++              +
Sbjct: 233 DDQFLSSKRKELPKGIWVGTNQQSFYSEYQKFWIDQKGYIFEDKKQL--------FHSSI 284

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H  QN+L+ +     +  D  +  K++  F     R             +  ++
Sbjct: 285 LKIPGKHNLQNLLLVIAAAREIGLDDSSIAKSIKSFRSIPHR---LEYLGKINNLSFYND 341

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  S    +  +           I + G + + G+                + + +
Sbjct: 342 SKATNFDSSITGLKSVPH-------PIILLAGGIQKKGDFMPWVKQ------IKQSTNGI 388

Query: 405 WLSGFHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVD-GDV-VVV---KSS---- 452
            L G     LK+ L     +  +   + ++   +   +   +     +++    +S    
Sbjct: 389 VLFGLSANNLKEELLMSSYTGEIIIKKNLEEATIASINIARETNSRSILLSPACASFDQY 448

Query: 453 -----NSCGFYRLINLLLEEFPAIQ 472
                    F  L+    +++  I+
Sbjct: 449 KNYEERGDHFKNLV----KKYKLIK 469


>gi|258654962|ref|YP_003204118.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
 gi|258558187|gb|ACV81129.1| cyanophycin synthetase [Nakamurella multipartita DSM 44233]
          Length = 914

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 60/392 (15%), Positives = 108/392 (27%), Gaps = 49/392 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC------------IGSYNNHIGVPL 151
             ++  I+A+TG+ GKTT   M+     S+ +                +   +       
Sbjct: 500 SNARIPIVAVTGTNGKTTCSRMIGHIFKSMGRKVGMTSTDGVVIDDRLVIRSDASGPRSA 559

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASA 209
            +      VDF +FE+     G +R      R  +AV+  +AP HL       +E++A  
Sbjct: 560 RMVLQNPRVDFAVFEVA--RGGILREGLGYPRNDVAVVLNVAPDHLGLRGIDTVEQLAQV 617

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS-- 267
           K  I E + K+G+  LN DD     ++       +           +D   R  K     
Sbjct: 618 KQVIVEAVPKSGSAVLNADDPLVAGMRRACSGEVVWFSTEPDNRMISDHCRRGGKAVILE 677

Query: 268 -----------EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
                                   +     G      QN +          A +      
Sbjct: 678 RSDLGELIVLVHGRRRMPLAYTHLVPATFGGKAMFNVQNAMAAAAAAYCAGAHLGDIRGG 737

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV-L 375
           L  F P                  +I + Y  N  +M A  + + +             +
Sbjct: 738 LRSFTPSYYSAPGRMNLTEVRGVKVIVD-YCHNAPAMVALGAFVDRFFEDSASWERPQRI 796

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPRS---- 421
           G +   G+      IDL    +  +   + +           G     +      +    
Sbjct: 797 GVIATAGDRRDQDMIDLGLEAAK-HFDRIIVREDERLRGRAPGETAGLIVQGAKEAQAQG 855

Query: 422 ---IHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                +                   GD+V+V 
Sbjct: 856 GRVKQIEVVLDEIEATKVAVEWANPGDLVLVC 887


>gi|119504381|ref|ZP_01626461.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
 gi|119459889|gb|EAW40984.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2080]
          Length = 459

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 63/368 (17%), Positives = 114/368 (30%), Gaps = 23/368 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IA++G+ GKTTT  ML      ++      G     +     L+      DF + E   
Sbjct: 107 VIAVSGTHGKTTTTSMLA---WILEYAGMAPGFLVGGVPADFGLSATLGGSDFFVVEADE 163

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                          +P   VI  +   H   F  +  I       F  L +        
Sbjct: 164 YDTAFFDKRSKFVHYKPRTLVIANLEYDHADIFPDLAAI----ETQFHHLVRCVPSQGLI 219

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                  +             SFG   ++ +++R     + + +  V  +G +  V    
Sbjct: 220 IHGRAPAIDQVFSKGVWSPRQSFGTETDSQWKVRAMSL-AGEQFELVSPEGATEVVTWSL 278

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           IG H   N    +         +  A +AL  F   + R               I + + 
Sbjct: 279 IGQHNLLNACAAVAAAHHAGVPLPVAARALENFSGVKRRL----ELRGTPGGIAIFDDFA 334

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +P ++   +  +      G GR +AV+          +  H  +A   +      V+  
Sbjct: 335 HHPTAIAMTLEAMRDRIGVGSGRLLAVI---EPRSATMKDGHHGVALAAATAAADEVFWY 391

Query: 408 ---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              G           ++    + + +D L   +  +   GD VVV  SN  GF  +   L
Sbjct: 392 EPPGLSWPLAALVAGQTGQSVW-QHIDTLVDAVAVTATAGDAVVV-MSNG-GFGGIHEKL 448

Query: 465 LEEFPAIQ 472
           L+     +
Sbjct: 449 LQCLGKTE 456


>gi|327330618|gb|EGE72364.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL097PA1]
          Length = 471

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYAIGSPLAATGMSSRLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|220935613|ref|YP_002514512.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996923|gb|ACL73525.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 453

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 114/378 (30%), Gaps = 30/378 (7%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             LA          ++A+ G+ GKTTT  ML      ++      G     +     ++ 
Sbjct: 94  QWLAEHVLK--DRWVLAVAGTHGKTTTSSMLA---WILEYAGLRPGFLIGGVPENFGVSA 148

Query: 156 MPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +  F + E                  RP   V+  +   H   F  +  I      +
Sbjct: 149 RLGEAPFFVVEADEYDTAFFDKRSKFVHYRPRTLVLNNLEYDHADIFPDLAAIERQFHHL 208

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              +   G I  N DD     + ++     ++     G            +      +  
Sbjct: 209 VRTVPGEGLIVRNADDENLSRVLSQGCWTPVQGFSVAGHGDWQGR----PQSPDASRFQV 264

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
           +       EV    IG H   N L  L         V   I AL+ F   + R +     
Sbjct: 265 LYRGESQGEVCWEMIGRHNMANALAALAAARHAGVPVPQGIHALAKFQSVKRRLQ----L 320

Query: 334 LNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLA 393
             +     + + +  +P ++   +     +       RI  + D              LA
Sbjct: 321 RGERSGIQVYDDFAHHPTAIATTLEA---LRARVGAARIIAVLDPRSNTMRMGVHRDRLA 377

Query: 394 EVLSLYNISHVWL-----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L+      V+L      G+    + DALP   H       D L   + + +  GD V+
Sbjct: 378 GSLAAA--DRVFLHAPADLGWDSQVVIDALP---HGLACADTDALLAALLAEVRPGDHVL 432

Query: 449 VKSSNSCGFYRLINLLLE 466
           +  SN  GF  L + LL 
Sbjct: 433 I-MSNG-GFGGLHDRLLA 448


>gi|195941036|ref|ZP_03086418.1| putative ligase [Escherichia coli O157:H7 str. EC4024]
          Length = 457

 Score = 43.3 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 69/368 (18%), Positives = 116/368 (31%), Gaps = 36/368 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+  D  F + E   
Sbjct: 105 VVAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLG-DSPFFVIEADE 161

Query: 170 SHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++  +   H   F  ++ I      +   +   G I L  
Sbjct: 162 YDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIILPE 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHH 286
           +D   +   A          +S  +        +  K  ++ S  EV     K  EV   
Sbjct: 222 NDINLKQTLA-------MGCWSEQELVGEQGHWQAKKLNADASEWEVLLDGEKVGEVKWG 274

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +G H   N LM +     +      A  A           +R      +     + + +
Sbjct: 275 LVGEHNMHNGLMAIAAARHVGVLPADAANA----LGTFINARRRLELRGEANGVTVYDDF 330

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISH 403
             +P ++ A ++ L      G  R +AVL    +  +MG         L           
Sbjct: 331 AHHPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGICKDDLAPSLGR------ADE 383

Query: 404 VWLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
           V+L         V  + DA  +    H+S  +D L   +  +   GD ++V  SN  GF 
Sbjct: 384 VFLLQPQHIPWQVAEVADACIQ--PAHWSADVDVLADMVVKAAQPGDHILV-MSNG-GFG 439

Query: 459 RLINLLLE 466
            +   LL+
Sbjct: 440 GIHQKLLD 447


>gi|304316506|ref|YP_003851651.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778008|gb|ADL68567.1| FolC bifunctional protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 425

 Score = 43.3 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 17/203 (8%)

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
             +   K     S  +V        +    IG H   N  + +  V  L        + +
Sbjct: 222 MDINDVKIKESNSNHQVFDYKNYKNLKISIIGKHQIYNASLAVMAVEKLIQYGINISEDV 281

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
                   +       +++    +ID ++N    +      +   ++     R I V+G 
Sbjct: 282 IKRGLINAKWPGRIEVISKLPLIVIDGAHNPQGMAA-----LKEALNLFTYNRLILVIGM 336

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGF--HVLALKDALPRSI---HVHYSETMDG 432
           + +  + + S    +           +  +          + L + I    V + E +D 
Sbjct: 337 LKD--KDTDSMLKLIVPEA-----DLIITTKPISDRAYTAEELSQKIAYDDVLHFENIDD 389

Query: 433 LFLFIQSSLVDGDVVVVKSSNSC 455
                  S    D+++   S   
Sbjct: 390 AINEALKSAGKNDLILFCGSLYM 412


>gi|329890508|ref|ZP_08268851.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
 gi|328845809|gb|EGF95373.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase [Brevundimonas diminuta ATCC 11568]
          Length = 356

 Score = 43.3 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 99/293 (33%), Gaps = 19/293 (6%)

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L  S  G  +     V    A  T +   HL     ++E  +AK  +FE L   G   + 
Sbjct: 47  LEASSHGIDQRRLDGVAIKAAGFTNLTQDHLDYHGTMDEYRAAKMRLFEALLPRGRTAVL 106

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
             DS      A +  +    +   G+    D  L   +   E   + + ++G+  +V+  
Sbjct: 107 NADSDAYSAFASASIMAGLGVMGVGERGR-DLTLLARRATPEGQRLTLDVRGRLHDVLLP 165

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G   A N L+  G+      D D  I AL +    +GR +R      +G    +D ++
Sbjct: 166 LAGAFQASNALVAAGLCIAGGEDPDRVIPALELIQGAQGRLQRI-PGGARGGEVYVDYAH 224

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +         VL+ + PH  GR I V G     G         L   ++        +
Sbjct: 225 TPDGLET-----VLNALRPHATGRLIVVFGA----GGDRDRAKRPLMGEIAGRLADTAIV 275

Query: 407 SG-----FHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +          A++  +                     S + +GDVVV+  K 
Sbjct: 276 TDDNPRSEDPAAIRAQVRAGCPDSLEIGDRREAIRHAVSLMREGDVVVIAGKG 328


>gi|300309737|ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
 gi|300072522|gb|ADJ61921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 460

 Score = 43.3 bits (100), Expect = 0.090,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 100/366 (27%), Gaps = 22/366 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVD--VDFGIFE 166
           ++A+ G+ GKTTT  ML   L          IG    + GV   L          F + E
Sbjct: 105 VLAVAGTHGKTTTSAMLAWVLEHAGYQPGFLIGGVPMNFGVSARLGSDGQGGPAPFFVIE 164

Query: 167 LGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                             R   AV+  +   H   F  +  I +    +   +   G + 
Sbjct: 165 ADEYDTAFFDKRSKFVHYRTRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRLI 224

Query: 225 LNYDDSFFELLKAKSHALGIKTI---YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
           +N  +   + + A+      +                +  ++    +           + 
Sbjct: 225 VNGREPALQRVLARGCWSEREDFGVAQGQSGWSLLTHEDGRFDVFFDGQTQGTVEWQLTG 284

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E         +A    + + +   +      A+ A      +               F  
Sbjct: 285 EHNRMNALAAIAAARHVGVPVAQAI-----AALGAFQSVKRRMELRGSANGVAVYDDFAH 339

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +     A ++  +     ++          LG M +    S +    +    +    
Sbjct: 340 HPTAIATTVAGLRKKVGAARILAVLEPRSNTMKLGTMKQALPGSLADADLVFGFGAHTGR 399

Query: 402 SHV-WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
             + W  G  +  L         +            ++++   GD V+V  SN  GF  +
Sbjct: 400 DALGWDLGEALAPLGAKAAAFDDLAAL------VQAVKAAARPGDHVLV-MSNG-GFGGV 451

Query: 461 INLLLE 466
              LL+
Sbjct: 452 HQKLLD 457


>gi|292669645|ref|ZP_06603071.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas
           noxia ATCC 43541]
 gi|292648442|gb|EFF66414.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas
           noxia ATCC 43541]
          Length = 460

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 97/336 (28%), Gaps = 40/336 (11%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVPL      +  D  I     S+       T    P +A    + P H+     +E 
Sbjct: 148 NIGVPLIDVAQEIPADGAIAAEISSYQM---EATTHFHPAVAAELNVTPDHIVRHGSMEV 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             + K ++F        + LNYDD     +  ++             S+ A  +      
Sbjct: 205 YQAMKEKLFAAQTHEDFLVLNYDDPHTRGMAERAAGHVCFFSRRTELSEGATVRA----- 259

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +   +      + + +    +G     N+   L   ++      T  +A  V    +G
Sbjct: 260 --DGMIVMRWDGAEHVLIPVRELGIPGGHNVENALAASAMALLAGVTPAEARPVLRSFKG 317

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              R             ++S   N  S   A+           G  + + G     G+  
Sbjct: 318 VEHRIEFVRTLDGVNYYNDSKATNTDSAIKALEAFD-------GHIVLIAG-----GDDK 365

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSE-TMDGLFLFIQSS 440
            +   +  E++    +  + L G        A         H+  +   M          
Sbjct: 366 LTDLTEFMELVHAR-VDELILIGDAAARFAAAAEGAGLSKQHIRRAGYNMAAAVQAAHDL 424

Query: 441 LVDGDVVVV---KSS---------NSCGFYRLINLL 464
              G  V++    +S             F R++N L
Sbjct: 425 AAKGQTVLLSPACASFDMYSGYEERGRDFKRIVNEL 460


>gi|226311413|ref|YP_002771307.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
 gi|254765985|sp|C0ZAJ4|MURC_BREBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|226094361|dbj|BAH42803.1| UDP-N-acetylmuramate--L-alanine ligase [Brevibacillus brevis NBRC
           100599]
          Length = 460

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 116/370 (31%), Gaps = 42/370 (11%)

Query: 101 AARLRSKATI------IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
             R +  A I      +A+ G+ GKTTT  M++  L         I        +     
Sbjct: 91  MHRSQMLARILNERTGVAVAGAHGKTTTTSMISHVLEECGVDPTFIIGGEL---MSAGTN 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEI 213
                 D+ I E   S    + +     RP   ++T+I P HL +F      +  A  + 
Sbjct: 148 AKAGTSDYVIAEADESDGSFLEY-----RPMYEIVTSIEPDHLEHFDGDFNNLKQAYVQF 202

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              L+  G   L  DDS    +        +           A F     +     S  +
Sbjct: 203 LSHLKPDGKAILCIDDSHVREVMPSVEKTVVTYAVDPNFVAQAQFSATSIECGDRCSTCQ 262

Query: 274 VQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           V  + +   E+     G H   N L  + +   +    D   +ALS F   + R +    
Sbjct: 263 VYHKDERLGELCLVVPGKHNIANALAAIVVCLDIGLSFDKIAQALSTFSGAKRRFQ---- 318

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            +      L+ + Y  +P  +      ++ +S      R  +     +    +     + 
Sbjct: 319 IIGDARGVLVVDDYAHHPTEI------IATLSGARASGRRVIAVFQPQRYTRTYFLMDEF 372

Query: 393 AEVLSLYNISHVWLS------------GFHVLALKDALPRSIH--VHYSETMDGLFLFIQ 438
           +   +      V ++            G     L   +  + H    Y  T + +   + 
Sbjct: 373 SRAFAEA--DEVIITDIYSPAGEEKIEGVTSEVLVQKIRTNSHPRAQYIPTKEQMQEHVF 430

Query: 439 SSLVDGDVVV 448
             L +GD+V+
Sbjct: 431 KELQEGDLVL 440


>gi|134282690|ref|ZP_01769393.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|226196146|ref|ZP_03791731.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
 gi|134245776|gb|EBA45867.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 305]
 gi|225931732|gb|EEH27734.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pakistan 9]
          Length = 199

 Score = 43.3 bits (100), Expect = 0.091,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 69  ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 121

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 122 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 173


>gi|167626522|ref|YP_001677022.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167596523|gb|ABZ86521.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 456

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 69/374 (18%), Positives = 120/374 (32%), Gaps = 38/374 (10%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
            +IAI G+ GKTTT  M    L          +G  ++  GV         D  + + E 
Sbjct: 106 KVIAIAGTHGKTTTTTMTIKILEQAGLNPSFLVGGVSSDFGVSSR----YTDSGYFVIEA 161

Query: 168 GMSHLGEIRFLT--HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +      P I VI  I   H   F  I+ I     ++   +  T  I  
Sbjct: 162 DEYDTAFFDKRSKLIHYDPSIFVINNIEFDHADIFKDIDAIFWQFHQLLRKMPSTAKIIY 221

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N  D   + + +      +  + S          L   K      +    + G ++EV  
Sbjct: 222 NAKDDNVQKIISMGCWSELVKVNSDLAISITKHTLDYSK------FELCDINGNNVEVSW 275

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             IG H A N +    +   L    +    AL  F   + R       L+      + + 
Sbjct: 276 GLIGEHNALNAMSAYAVAKQLNISDEVIKDALESFKGVKRRL----EVLSHQDNVTLYDD 331

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMC----EMGELSQSFHIDLAEVLSLYNI 401
           +  +P S+K  +     +    +   +  L D        G+   +  + + E       
Sbjct: 332 FAHHPTSIKLTLEA---VRNKAKDAYVIALIDPRSNTMRQGDNKDNLPMSIIE------A 382

Query: 402 SHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVD--GDVV-VVKSSNSC- 455
             V L    +L    K+ L  S +V +  ++D     +   L       + +V  SN   
Sbjct: 383 DRVLLYNHSLLKWDAKEVLKNSNNVDFIVSVDDFVDCVDELLTKYRDRNIQLVMMSNGSF 442

Query: 456 -GF-YRLINLLLEE 467
            G   +L+ LL  +
Sbjct: 443 DGLREKLVKLLETK 456


>gi|89890892|ref|ZP_01202401.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Flavobacteria bacterium BBFL7]
 gi|89517037|gb|EAS19695.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Flavobacteria bacterium BBFL7]
          Length = 329

 Score = 43.3 bits (100), Expect = 0.093,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           MN  +T   + + + G  IG   Q  + GI  I  R     +  F    G       +  
Sbjct: 1   MNS-FTAQQICEVLDGTLIGSTTQ-EITGIEEI--RKATNNDLTFI---GNK----KYAK 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                 A + +V+ ++    G   + +  V +   A+  +  A   
Sbjct: 50  FWSDSKASIAIVSENIELEPGDNRV-LIKVKNADLAMANMLEAFLP 94


>gi|296285056|ref|ZP_06863054.1| hypothetical protein CbatJ_15620 [Citromicrobium bathyomarinum
           JL354]
          Length = 476

 Score = 43.3 bits (100), Expect = 0.094,   Method: Composition-based stats.
 Identities = 63/414 (15%), Positives = 126/414 (30%), Gaps = 33/414 (7%)

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   V +T   V     L +P     D+  AL   A           +A+ G+ GK+T  
Sbjct: 83  ASAAVEDTVPEVVRAKELGLPRLTRADLNAALFNAAETG--------VAVAGTSGKSTVT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML   L    K    +          ++  R       G  +L +S + E        +
Sbjct: 135 GMLGWILHHAGKNPTIMNGAVMKN--FVSDDRPFASAVVGDADLYVSEVDESDGSIAQYK 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++  ++         ++E+     +     E +    +N DD     L A ++A  
Sbjct: 193 PAVGILLNVSLD----HKSMDELRQLFGDFL---EASDRSVVNADDEEAFRLVAHANAPL 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + +   +              + + +  +       +  +  G H   N L  +   
Sbjct: 246 TFGVTNGCAALGIVEGSIAEGPTRQAAMVHDKRDDSQHALTLNLPGRHNLSNALAAIAGA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           +     V  A+ AL+ F     R               + + +  NP    A +  L   
Sbjct: 306 NAAGVSVADAVAALAEFKGLARRFDI---VGTSSSGVTVIDDFGHNPEKAAATLRTLKAH 362

Query: 364 SPH----GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLAL 414
                   +      L  M   GEL+++F  +L           V+  G          +
Sbjct: 363 EGRVLAFFQPHGYGPLKQMG--GELAETFARELGPEDISLLCDPVYFGGTVDRSEGSERI 420

Query: 415 KDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            D + +      +  T +G   ++ ++   GD + +  +           +LE 
Sbjct: 421 VDLIAKHGGKAIHINTREGCGDWLVANARPGDRIAIMGARDDTLSVFAKDVLER 474


>gi|167823655|ref|ZP_02455126.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 9]
          Length = 256

 Score = 43.3 bits (100), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 80  ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 132

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 133 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 184


>gi|319649667|ref|ZP_08003823.1| hypothetical protein HMPREF1013_00427 [Bacillus sp. 2_A_57_CT2]
 gi|317398829|gb|EFV79511.1| hypothetical protein HMPREF1013_00427 [Bacillus sp. 2_A_57_CT2]
          Length = 149

 Score = 43.3 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 22  VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV-NTDMVASIGS 80
             +   + ++  S ++ P+  +    G    G+  +  A++ GA   +        +   
Sbjct: 20  DNELEFHTVASSSSALQPKGIYIPF-GEA--GN--LKEAIENGAVAALWHENAETPAYTP 74

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSK 107
              P+F  +D+   L  +      +  
Sbjct: 75  NHFPIFYTNDLTKGLKDIMKLYIEKLN 101


>gi|162329635|ref|YP_470341.2| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli CFN 42]
 gi|109892728|sp|Q2K6C2|MURC_RHIEC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
          Length = 471

 Score = 43.3 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 142/442 (32%), Gaps = 60/442 (13%)

Query: 33  DSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI--- 83
           DS ++        E F         GH     A   G A +VVV+T +  S   L     
Sbjct: 41  DSANVQRLREKGIEVFV--------GHR----AENLGDAEVVVVSTAIRKSNPELIAARE 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V  V  A   LA   R R     IAI G+ GKTTT  ++   L +       I   
Sbjct: 89  KLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGG 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +            + ++ + E   S           +   +AVIT I P HL ++   
Sbjct: 143 IIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPADVAVITNIDPEHLDHYGNF 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + +A  +  E +   G   +  D    + L  +     I    ++G++  AD + +  
Sbjct: 195 DAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKII---TYGENPQADVRFKNV 251

Query: 264 KQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +S  +V+++ +                G H   N    + + + L    +   K 
Sbjct: 252 RIDGTRSIFDVEIRRRRTGQRTELKGLVMPMPGRHNISNATAAIAVANRLGISSEDIAKG 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS------QISPHGEGR 370
           L+ F   + R               I + Y  +P  +KA +           I+ H   R
Sbjct: 312 LASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIKAVLKAAREACKGRIIAVHQPHR 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSE 428
              +     E           L   +       +   G    +L   +    H    +  
Sbjct: 368 YTRLASLFEEFAACFNDADSILLAPVYAAGEDAI--EGVDSTSLVSRIKSGGHRDARFLS 425

Query: 429 TMDGLFLFIQSSLVDGD-VVVV 449
           + + L   +      GD VV++
Sbjct: 426 SAELLPEMVAEVAKPGDFVVLL 447


>gi|52425669|ref|YP_088806.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307721|gb|AAU38221.1| MurC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 453

 Score = 43.3 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 89/316 (28%), Gaps = 21/316 (6%)

Query: 157 PVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
             D  + + E                   P   +I  I   H   F  ++ I      + 
Sbjct: 150 FTDSPYFVIEADEYDTAFFDKRSKFVHYNPKTLIINNIGFDHADIFDDLKAIQRQFHHMI 209

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
             +  +G I     +   +              +S  +    + +    +  ++ S   V
Sbjct: 210 RTIPASGRILSVATEQSVKETLD-------MGCWSEKQFLGKEQEWNAERITNDCSRFAV 262

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
              G+ +  VH  I      +    L  ++           A           +R     
Sbjct: 263 FHLGEKVAEVHWDIVGQHNMH--NALMAIAAAYHAGVKIEDACRALATFVNAKRRLEVKG 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G  T+ D+  +      +   ++ +     G G RI  + +             ++A 
Sbjct: 321 EVGGVTVYDDFAHH---PAEIQATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDEIAP 377

Query: 395 VLSLYNISHVWLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            L      +V+L          ++ A        ++  +D L  F+       D ++V  
Sbjct: 378 ALVRS--DYVFLLQPDNIPWEVVEIANKCVQPTKWTADLDKLVDFVVQEAQPTDHILV-M 434

Query: 452 SNSCGFYRLINLLLEE 467
           SN   F  +   +L++
Sbjct: 435 SNGS-FGGIHQKILDK 449


>gi|289750755|ref|ZP_06510133.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289758279|ref|ZP_06517657.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
 gi|289691342|gb|EFD58771.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T92]
 gi|289713843|gb|EFD77855.1| UDP-N-acetylmuramyl tripeptide synthase [Mycobacterium tuberculosis
           T85]
          Length = 120

 Score = 43.3 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 15/84 (17%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLA----------LKDALPRSIHVHYSE--T 429
           G+        +  + +      V ++  +             L  A          E   
Sbjct: 7   GDRDPGKRAPMGRIAAQLA-DLVVVTDDNPRDEDPTAIRREILAGAAEVGGDAQVVEIAD 65

Query: 430 MDGLFLFIQSSLVDGDVVVV--KS 451
                    +    GDVV++  K 
Sbjct: 66  RRDAIRHAVAWARPGDVVLIAGKG 89


>gi|146310084|ref|YP_001175158.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
 gi|145316960|gb|ABP59107.1| UDP-N-acetylmuramate [Enterobacter sp. 638]
          Length = 457

 Score = 43.3 bits (100), Expect = 0.096,   Method: Composition-based stats.
 Identities = 64/367 (17%), Positives = 111/367 (30%), Gaps = 34/367 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFDVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIYPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +           K  ++ S  EV     K  +V    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWHAKKLTTDASEWEVLLDGEKVGQVKWAL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVTPADAADA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +P ++ A ++ L      G  R +AVL    +  +MG         L           V
Sbjct: 332 HHPTAILATLAALRG-KVGGTARILAVLEPRSNTMKMGLSKDDLAPSLGR------ADEV 384

Query: 405 WLSGFH-----VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYR 459
           +L         V  + DA  +    H+   +D L   +  +   GD ++V  SN  GF  
Sbjct: 385 FLLQPQHIPWQVAEVADACIQ--PAHWHADVDTLADMVIKTAQPGDHILV-MSNG-GFGG 440

Query: 460 LINLLLE 466
           +   LL+
Sbjct: 441 IHQKLLD 447


>gi|254479547|ref|ZP_05092864.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034515|gb|EEB75272.1| Mur ligase family, glutamate ligase domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 260

 Score = 43.3 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 24/231 (10%)

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
           +   +         + ++G    A    ++ K        +VQ+Q K  E+     G   
Sbjct: 13  DKYSSMMIESSKGKVLTYGIKDFAYVMAKEIKNSLSGVKFKVQIQDKKEEISLKIPGLFS 72

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             N L  + +   L   + +  +ALS       +G+       + F+  ID ++  +   
Sbjct: 73  VYNALAAITVADFLGIPLRSVREALSH---VTVKGRFEPVETGRDFYVFIDYAHTPDG-- 127

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
                +++  +  +  GR+I V G     G         L   ++        L+  +  
Sbjct: 128 ---IRNIMEALKEYEAGRKILVFGA----GGDRDKSKRPLMGEVAGKYADFCILTSDNPR 180

Query: 413 A---------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           +         +++ + + +      E       +  S+    DV+++  K 
Sbjct: 181 SENPKEIIAQIEEGIKKTNCPYVVIEDRREAIRYALSNAQKDDVIILAGKG 231


>gi|163854876|ref|YP_001629174.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii DSM 12804]
 gi|163258604|emb|CAP40903.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bordetella petrii]
          Length = 458

 Score = 43.3 bits (100), Expect = 0.097,   Method: Composition-based stats.
 Identities = 64/375 (17%), Positives = 119/375 (31%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+ G+ GKTTT  ML   L +       +     H       AR    V   + 
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLRPNFLIGGVAHD--LKVSARYDPAVRPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F  +  I +    +   + + G I
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPERGRI 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            L    +  + + A+          + G  +            ++ ++  ++       V
Sbjct: 219 VLPTGSAALDRVMARGCWSETVRFGAGGAWQAGP-------ADADGAFEVLRHGQAIGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
                G H   N L  L        D    + ALS F   + R +    A     +    
Sbjct: 272 RWTLGGEHNRLNALAALAAAEHAGVDPAEGVAALSRFGGVKRRMELRGTAGGVKVY---- 327

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYN 400
           + +  +P +++  +  L      G+ R +AVL    +  ++G ++           +L  
Sbjct: 328 DDFAHHPTAIETTLEGLR--RQVGQARILAVLEPRSNTMKLGAMAARL------PAALQG 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G                 P        + +D L   +  +   GD V+V  SN
Sbjct: 380 ADRVFCFGARSGKHALGWNPDEVLAPLGERASSYDDLDALVAAVAQAAQPGDHVLV-MSN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGVHGKLLDAL 452


>gi|238927325|ref|ZP_04659085.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
 gi|238884607|gb|EEQ48245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas
           flueggei ATCC 43531]
          Length = 469

 Score = 42.9 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 45/308 (14%), Positives = 82/308 (26%), Gaps = 37/308 (12%)

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T     HI     I P H+     +E   + K ++F        + LN DD    
Sbjct: 182 YQMEATTHFHAHIVAELNITPDHIVRHGSMEVYQAMKEKLFAAQTAEDYLVLNADDPHTR 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  +        +  F + +                  +               G H  
Sbjct: 242 GMAER----AAGRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADELGIPGAHNV 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L    +              L  F   E R             +  ++S   N  S 
Sbjct: 298 ENVLAASAMALFAGVTPAEMRPVLRAFKGVEHRI---EFVRALAGVSYYNDSKATNTDSA 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
             A+           G  I + G     G+   +   +  E++    +  + L G     
Sbjct: 355 IKALEAFD-------GHIILIAG-----GDDKLTDLGEFMELVHAR-VDELILVGDAAER 401

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
           F   A    +P +        M+      +    +G +V++    +S             
Sbjct: 402 FAAAARDAGIPEAQIHRVGYHMEKAVQLARELAAEGQIVLLSPACASFDMYGGYEERGRD 461

Query: 457 FYRLINLL 464
           F RL+N L
Sbjct: 462 FKRLVNEL 469


>gi|325122513|gb|ADY82036.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 356

 Score = 42.9 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQK 63
           +   +L   + G  +G     F+N  S+   +  P    F        +G  +I  A   
Sbjct: 6   YRLDELAHLVNGELVGAGSLQFINLASL--ENAEPSHITFV-------NGEKYIDQAKAS 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            AG  +V + +   +         VD+   A   L  A   +   T I I  +
Sbjct: 57  RAGAYIVTSSIKEQLTDKQ-NFIIVDNPYLAFAILTHAFDKK--ITSIGIEST 106


>gi|110803060|ref|YP_699195.1| FolC bifunctional protein [Clostridium perfringens SM101]
 gi|110683561|gb|ABG86931.1| FolC bifunctional protein [Clostridium perfringens SM101]
          Length = 441

 Score = 42.9 bits (99), Expect = 0.100,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 28/313 (8%)

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASA 209
           +        VD+ + E+    LG     T+++ P I V+T+I+  H++     IEEIA  
Sbjct: 128 MFYYFSKKKVDYAVLEV---GLGGRLDATNVILPEIVVLTSISLDHMNILGNTIEEIAKE 184

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  I +G           ++   E++K + + LG      + K    D +     +    
Sbjct: 185 KCGIIKGGVPVI--SYPQEEKALEVIKERCNELGCNLEVVYTK----DIRNIIIDKEKHV 238

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +EV L+ + +++    +G H  +N L+ L  +  L  +             K+ R   
Sbjct: 239 QKIEVSLEDEILKIDLCLLGDHQVKNFLLALKTLIKLRNNGVNISNEAIKEGFKKVRWIG 298

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
               LN+    +ID ++N +                        +LG    +G+      
Sbjct: 299 RMEVLNENPLVVIDGAHNIDGIRSLRNS----IDKYFNFKNITLILGV---LGDKQVD-- 349

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGLFLFIQSSLV 442
            ++ E +    +  V +   H    +D              V   +     +    S   
Sbjct: 350 -EMVEEI-TRGVDRVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEAYNKAYSLTN 407

Query: 443 DGDVVVVKSSNSC 455
           D D++++  S   
Sbjct: 408 DDDLLLICGSLYM 420


>gi|237811778|ref|YP_002896229.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
 gi|237504609|gb|ACQ96927.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei MSHR346]
          Length = 252

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 122 ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 174

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 175 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 226


>gi|46199025|ref|YP_004692.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55981051|ref|YP_144348.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
 gi|62900672|sp|Q5SJD2|MURD_THET8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|62900686|sp|Q72JQ1|MURD_THET2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46196649|gb|AAS81065.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Thermus
           thermophilus HB27]
 gi|55772464|dbj|BAD70905.1| UDP-N-acetylmuramoylalanine--D-glutamiate ligase [Thermus
           thermophilus HB8]
          Length = 417

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 13/174 (7%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
              + A    L  P        GA  L + A  A   S   I+ ITG+ GKT+T      
Sbjct: 56  EEVVAAPGVPLDHPHLKRLAARGAKVLGE-AELAYRLSPTPIVGITGTAGKTSTTLFTAH 114

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L +                V   L  +  + +  + EL    L       H  RP +AV
Sbjct: 115 LLRA------HGLRAREGGNVDPPLVSVVDEAEVAVAELSSFQL----ERVHAFRPRVAV 164

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           +  +   HL     +E   +AK  + + L     +  N  D         S A 
Sbjct: 165 LLNLGVDHLDRHGTVEAYHAAKLNLLKNLTPEDALVYNRLDPKVRRAAEASPAR 218


>gi|84490004|ref|YP_448236.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methanosphaera
           stadtmanae DSM 3091]
 gi|84373323|gb|ABC57593.1| predicted UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Methanosphaera stadtmanae DSM 3091]
          Length = 479

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 52/376 (13%), Positives = 105/376 (27%), Gaps = 37/376 (9%)

Query: 87  GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN-- 144
            V+     ++ +        K   I ITGS GKTTT +MLT    +         S    
Sbjct: 94  KVEVTRKTISDIINRILPMDK---IGITGSFGKTTTTDMLTNIFKAAGYNVYQCSSMKWN 150

Query: 145 --NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG 202
             +   V   +    +  D  I EL          L   +   I V+T + P HL  F G
Sbjct: 151 LVSEAIVDDIVKGEYIGADIAILEL----PHGTLGLMGEIDLKIGVLTNLRPEHLCEFGG 206

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
             E    +            I  +         +  +     +   +    K        
Sbjct: 207 SMEKYVERKACIL-PASQKLIANSQCGDLLTYKREDTVYFNFENDEAVNLDKYTPTYYGF 265

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
           +        +    +    E+    I ++  +N+   + +       ++   K + +F  
Sbjct: 266 YDDGKYNIRIVNNKETTESEIEIDTIAFYTYENLTAAIAVSREYGISLNDIKKGIGMFTG 325

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
             GR +          +        +   ++++       +    +      + D  E G
Sbjct: 326 VGGRMEYLGKFNGVDAYYDASYGDQSVRQALESVKD--ENLIILYDNVDSTTIRDKAESG 383

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSG----------FHVLALKDALPRSIHVHYSE-TMD 431
                    + +  +      V  +G             L L +A+     +  +  T+D
Sbjct: 384 -------RVIGDYAN-----IVIATGYVEITNTLDMDAALDLLNAIENDDVLKIALCTLD 431

Query: 432 GLFLFIQSSLVDGDVV 447
                       GD++
Sbjct: 432 EAAELAMKYAKPGDII 447


>gi|293603271|ref|ZP_06685701.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
 gi|292818332|gb|EFF77383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Achromobacter piechaudii
           ATCC 43553]
          Length = 456

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 55/375 (14%), Positives = 104/375 (27%), Gaps = 39/375 (10%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A ++A+ G+ GKTTT  ML   L +       +             AR        + 
Sbjct: 101 PGAHVLAVAGTHGKTTTSSMLAWILEAAGLAPNFLIGGVAAD--LKVSARYDPARRPFVI 158

Query: 166 ELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E                  RP  A++  +   H   F  +  I +    +   +  +G I
Sbjct: 159 EADEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPASGRI 218

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
                    + + A+         +S   +   D   +      + ++  ++       V
Sbjct: 219 VRPARSDALDRVIARGC-------WSETVTFGPDGAWQASAPDDDGAFTVLRNGADVGTV 271

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFT 340
             +  G H   N L  L             + AL+ F   + R +             F 
Sbjct: 272 RWNLSGEHNRMNALAALAAAEHAGVPAAEGVTALTRFAGVKRRMELRGTVNGIKVYDDFA 331

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
               +       ++  +     ++          LG M                  +L +
Sbjct: 332 HHPTAIATTLEGLRRQVGSARILAVLEPRSNTMKLGTMAARLP------------AALAD 379

Query: 401 ISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
              V+  G H               P        + +  L   + ++   GD V+V  SN
Sbjct: 380 ADLVFCFGAHSGKHALGWNPAEVLAPLGDRASSYDDIGALVAAVSAAARPGDQVLV-MSN 438

Query: 454 SCGF----YRLINLL 464
             GF     +L++ L
Sbjct: 439 G-GFGGIHGKLLDAL 452


>gi|76808881|ref|YP_333018.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121599034|ref|YP_992622.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|217423678|ref|ZP_03455179.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238563619|ref|ZP_00438573.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242315402|ref|ZP_04814418.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|251767842|ref|ZP_02268580.2| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
 gi|254199450|ref|ZP_04905816.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|76578334|gb|ABA47809.1| ribosomal RNA large subunit methyltransferase j [Burkholderia
           pseudomallei 1710b]
 gi|121227844|gb|ABM50362.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei SAVP1]
 gi|147749046|gb|EDK56120.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei FMH]
 gi|217393536|gb|EEC33557.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 576]
 gi|238520335|gb|EEP83796.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei GB8 horse 4]
 gi|242138641|gb|EES25043.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106b]
 gi|243061551|gb|EES43737.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei PRL-20]
          Length = 252

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 122 ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 174

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 175 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 226


>gi|290476455|ref|YP_003469360.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
 gi|289175793|emb|CBJ82596.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Xenorhabdus
           bovienii SS-2004]
          Length = 436

 Score = 42.9 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 71/375 (18%), Positives = 119/375 (31%), Gaps = 50/375 (13%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
               +   I+AITGS GK+T   ++                   +IG+P     +     
Sbjct: 99  FCREATTPIVAITGSNGKSTVTTLVGEMAKEAGWQV----GVGGNIGIPALEL-LKQPCQ 153

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T+ ++   A +  +   H+  +        A         K  
Sbjct: 154 LYVLELSSFQL----ETTYSLKAAAATVLNVTEDHMVRYPDGLSQYRAAKLRIYDQAKVC 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
            +                 A       SFG           ++  S +  + V  Q    
Sbjct: 210 VVNEQDA-------LTLPEAGKDSRCISFGVDSG------AYQLESGRQQLVVNHQSLLE 256

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N L  L +   +    + +I+AL  +   E R    +    +     
Sbjct: 257 TRQIRLTGQHNYTNGLAALALADAVGIPREASIQALQTYPGLEHRF---QVVHMRNGVRW 313

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N  S +AA+S L+      EG    +LG     G+   +    L   +S  NI
Sbjct: 314 VNDSKATNVGSTQAALSGLTL-----EGTLYLLLG-----GDGKAADFTPLQPYVSGNNI 363

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS------ 452
             ++  G     L   L   I V  +ETM+     I   L+ GD+V++    +S      
Sbjct: 364 -RLYCFGCDGNQLAQ-LRPEISV-LTETMEQAMRKIAPKLMTGDMVLLSPACASFDQFNG 420

Query: 453 ---NSCGFYRLINLL 464
                  F RL   L
Sbjct: 421 FEHRGHEFARLAEEL 435


>gi|307718907|ref|YP_003874439.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
 gi|306532632|gb|ADN02166.1| UDP-N-acetylmuramate--L-alanine ligase [Spirochaeta thermophila DSM
           6192]
          Length = 489

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 118/398 (29%), Gaps = 47/398 (11%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
              +A    L IP +       AL   +   R         I G  GKT+T  +    L 
Sbjct: 85  HPQLAEAARLGIPCYSYP---RALGAYSTHFRS------AGIAGVHGKTSTTALAGTLLR 135

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDV---DFGIFELGMSHLGEIRFLTHLVRPHIAV 188
           ++        +      VPL   R  +      + + E        + F      P   V
Sbjct: 136 ALSL----PAATLTGSAVPLWGGRATLTHPAPRYFVAETCEYRRHFLHFS-----PTWIV 186

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK-TI 247
           +T++   HL  +   E+I +A  E    L   G +    D      L     A   + T+
Sbjct: 187 LTSVEEDHLDYYPTYEDIFAAFLEYARLLPPHGALVYCADQPGAARLAHTLAAERPELTL 246

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             +G++    F++    Q        +         V        A   L  + +++   
Sbjct: 247 IPYGRTAPGPFRITAVHQHPGGQTARLAAGLSFTLHVPGTHMLLNAAAALALISLIAQDA 306

Query: 308 ADVDTAIKALSVFHPK-------EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
               +    L+ + P            +R    + +    L  + Y  +P +++A +   
Sbjct: 307 GRAPSPEALLTEYGPTLQDALASYTGTRRRSEVVGEACGILFLDDYGHHPTAIRATLEGY 366

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW------------LSG 408
               P        +L  M      + +   + A      +I  +             ++G
Sbjct: 367 RSFYPGR----RIILDFMSHTYSRTAALLHEFARSFEPADIVILHKIYASAREKAGAVTG 422

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +     A+     VHY   +   F +    L  GD+
Sbjct: 423 EDLYRAAKAV--HPRVHYFHEIMDAFEYCTRLLGPGDL 458


>gi|307248439|ref|ZP_07530460.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306855081|gb|EFM87263.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 439

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 89/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 310 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 365

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D +   I       D ++V  S
Sbjct: 366 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDEVVKMIVEEAKPTDHILV-MS 422

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 423 NG-AFGGIHQKLLQALKA 439


>gi|260905306|ref|ZP_05913628.1| UDP-N-acetylmuramate/alanine ligase [Brevibacterium linens BL2]
          Length = 466

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 73/368 (19%), Positives = 134/368 (36%), Gaps = 38/368 (10%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           AL  L    R       +A+ G+ GKTTT  M T+AL +     + +        +  T 
Sbjct: 104 ALASLMAGKRA------VAVAGTHGKTTTTSMTTVALQACGLDPSFVIGGV----LSTTG 153

Query: 154 ARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
               +   D  + E   S    + +      P I ++T +   HL  +   E++  A  E
Sbjct: 154 TNAHLGTGDVFVAEADESDGSFLLY-----EPTIGILTNVEADHLDYYGTPEKVREAFVE 208

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSW 271
              G+   G   +   D    L  A+       ++  +G S++AD +LR+ +     +  
Sbjct: 209 FCAGIGADGGTVIACADDPGSLDVAQQARAQGTSVILYGTSESADVRLRELQSGLVSEFV 268

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++V  Q + + V     G H A N    + +   L ADV  A   L  +     R +   
Sbjct: 269 LDVPGQAEPLPVALRQPGTHNALNATAAIAVAHSLGADVAKAASGLGGYGGTRRRFE--- 325

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     + + Y  +P  ++A +S    +    EGR  A+      +   +  F  +
Sbjct: 326 -ERGIAAGVRVIDDYAHHPTELRAVLSAARGV-VTDEGRVWAIFQP--HLYSRTMEFRTE 381

Query: 392 LAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
             E L L     V +            G     + D +P   +V + E+      ++ + 
Sbjct: 382 FGEALGLA--DEVVVLDVFPAREDPVPGVTGALIADRVP-HENVTFVESFSEAVPYVAAR 438

Query: 441 LVDGDVVV 448
           +  GD+V+
Sbjct: 439 VRPGDLVL 446


>gi|300774447|ref|ZP_07084310.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
 gi|300506262|gb|EFK37397.1| UDP-N-acetylmuramate--L-alanine ligase [Chryseobacterium gleum ATCC
           35910]
          Length = 452

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 114/354 (32%), Gaps = 44/354 (12%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               IAI G+ GKTTT  ++          ++C     +          +     + + E
Sbjct: 110 NTDCIAIAGTHGKTTTSTLVAHLCKEADLPFSCFLGGISEN---FKSNFLYNGSMYSVVE 166

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                  E       + P  AV+T+    HL  +     I     +              
Sbjct: 167 AD-----EYDRSFLNLSPDWAVVTSTDADHLDIYGDKSHIEEGFRQFA------------ 209

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                 + L  +      +   ++  ++ AD+     +   ++ + +     ++++    
Sbjct: 210 ALVPQDKQLFIRKGLEIGRGHQTYAVNEPADYYSDNLRMDHDKIYFDFHTPTETVKDFVW 269

Query: 287 GIG-YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
            I   H  +N    L I+  L AD DT  KA+S F   + R  ++     +    +  + 
Sbjct: 270 EIPGIHNVENATAALAILHNLGADFDTLKKAISNFKGIKRRYTKHIYQNGK----IYIDD 325

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y  +P  + A +S +    P  +     ++     +   ++ F    AE LS      + 
Sbjct: 326 YAHHPTEINAVMSSIRTFYPDKK----LLVAFQPHLFSRTRDFADGFAESLSKA--DELI 379

Query: 406 LSGFH-VLALKDALPR----------SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           L   +    L++               +      ++   F  I+    D D+++
Sbjct: 380 LLDIYPARELQENFEGITSNWLLEKVKLDKKEVSSLSDAFEKIKE--KDFDILL 431


>gi|205355172|ref|YP_002228973.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274953|emb|CAR40023.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326630330|gb|EGE36673.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 457

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 62/364 (17%), Positives = 111/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 218

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 219 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDV--KW 273

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 274 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 333

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 334 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 385

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN   F  +  
Sbjct: 386 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLAEMVVKTAQPGDHILV-MSNGS-FGGIHQ 443

Query: 463 LLLE 466
            LL+
Sbjct: 444 KLLD 447


>gi|167768724|ref|ZP_02440777.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
 gi|167669122|gb|EDS13252.1| hypothetical protein ANACOL_00041 [Anaerotruncus colihominis DSM
           17241]
          Length = 489

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 60/382 (15%), Positives = 110/382 (28%), Gaps = 48/382 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    I ITGS GKTTT  ++   L    +     G+    +   + + R   D D
Sbjct: 137 FFDLCPCRTIGITGSDGKTTTTTLIAEILKEGGRRAHIGGNIGRPL---MPILRDIRDND 193

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
           F + EL    L     ++    P IAV+T I+P HL     ++E   AK  I        
Sbjct: 194 FAVAELSSFQL-----ISMRESPDIAVVTNISPNHLDVHGNMQEYIDAKRNIVLHQNAFS 248

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              L  D+       A     G    +S  +       L            E        
Sbjct: 249 RTVLGVDNELAASFAA--DVRGRLFEFSVRRPVRTGAFLGGDGFLYASVNGERSKIIHKN 306

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           E+   G+         +     ++    +              G   R      +     
Sbjct: 307 ELRLPGMHNIQNYLAAVCAVWGAVDVEAIRNVAMEF------GGVEHRIEFVREKDGVRW 360

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
            ++S    P    A +           G+++ V+      G   +     +   +    +
Sbjct: 361 YNDSIATTPTRTIAGLDSF--------GQKLIVIAG----GYDKKVPFDPMVPKVVE-KV 407

Query: 402 SHVWLSGFHVLALKDAL-------PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KS 451
             + L G     ++ A+          + +  + +++        +   GD+V +    +
Sbjct: 408 KTLVLIGATADKIETAVRADSGFSASGMTIIRAGSLEEAVEQAAVAAHSGDIVSLSPACA 467

Query: 452 S---------NSCGFYRLINLL 464
           S             F  L+N L
Sbjct: 468 SFDMFPNYETRGRRFKELVNAL 489


>gi|119953370|ref|YP_945579.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
 gi|119862141|gb|AAX17909.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Borrelia turicatae
           91E135]
          Length = 451

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 43/366 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
            IIAITG+ GK+T   +L   L          G+       PL+       V   I EL 
Sbjct: 112 PIIAITGTKGKSTLASLLHKVLVIKYPNSKLGGNIGVS---PLSFLDELDGVSPIILELS 168

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                        + P I++IT I   H + +S  +     K+ IF              
Sbjct: 169 S----WQLHDLRNLCPIISIITNIYSDHQNYYSNFDSYIEDKSRIFINQNSG-------- 216

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                +L ++  A          K K+  F            +   + +      V   +
Sbjct: 217 -----ILISQDQAYYNYFSRFKSKLKSILFSEAVPLNFENDVFYFKKGKIYLNNKVVGTL 271

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                  ++  +  + I +           +    +G   R             +++ + 
Sbjct: 272 SESRIVLLISKMITIFIASYLGLDLSVVSKIVTDFDGIEHRLEFVREFEGVKYYNDTAST 331

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
            P S   ++  L        G    + G     G   +       E+LS+   + + L G
Sbjct: 332 IPDSTILSVKSLRAY----GGLINLITG-----GTDKELDFAIFGEILSIVK-TWILLKG 381

Query: 409 FHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVK-SS-----------NSC 455
              L +   L  + I+     +++    + +   V  D+V+   +S              
Sbjct: 382 SATLKIIKFLEDNNINYFIFSSLEECVCYAKKISVQNDIVLFSPASASFELFKNEFDRGL 441

Query: 456 GFYRLI 461
            F  L+
Sbjct: 442 QFKNLV 447


>gi|50842246|ref|YP_055473.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
 gi|59798222|sp|Q6A9Q1|MURC_PROAC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|50839848|gb|AAT82515.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           KPA171202]
          Length = 471

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 33/397 (8%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L               +L +    RS A    + G  G +  
Sbjct: 73  AGARTVVVSSAIRPDNPELVEAH-----------RLGLRIWHRSAALAALMLGREGVSIA 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
                   + +  T       +    +   LA   +    G  E  +    E        
Sbjct: 122 GTHGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQY 181

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              I V+T +   HL N+   +        +     +   +  N DD     L  +  + 
Sbjct: 182 PSQIVVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRLEST 240

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
           G   + ++G+S+ A+ +L         +   +        +     G +   N      +
Sbjct: 241 GTVRVVTYGESEQAEVRLVDLDLNGTTASATLVYGPTQGRLELQVPGRYNLSNAAAAYCV 300

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
            S+L       +  ++ F     R +      +      + + Y  +P  ++A +    +
Sbjct: 301 GSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGAARR 356

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------GFHV 411
           +     G+   +      +   ++ F  +    L+L     V +S           G   
Sbjct: 357 V---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPGVTG 411

Query: 412 LALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             + DA +       Y      L   +   +  GD+V
Sbjct: 412 ELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|148284827|ref|YP_001248917.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Boryong]
 gi|146740266|emb|CAM80615.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Orientia
           tsutsugamushi str. Boryong]
          Length = 472

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 103/354 (29%), Gaps = 39/354 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    I ITG+ GK+TT  ++   L+     +   G+          +  +  +V+
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHILTFTNGKFDIGGNIGK------AVLSLRDNVE 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L   ++  +AV+  I   H+  +   ++   +K +I     K G
Sbjct: 161 GYVLELSSFQLD----LITDLKLDVAVLLNITADHIDRYYSFDQYILSKQKILSLATKNG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
              +N + S        +         +                K  +++S         
Sbjct: 217 YALINKECSIISNANYNTLYASKFRNTTCSLELIKKAINTDELNKSIADESINCQSQPTL 276

Query: 280 SMEVVHHGIG---------YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                H              H  QN+        IL  +      A++ F P   R    
Sbjct: 277 VKFSSHIPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAINQFQPLPHRM--- 333

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +    +    + ++S   N  +   A+  LS I     G          E G  S     
Sbjct: 334 QYIGKKNNIHIYNDSKATNADAASKALLSLSNIYWIAGGVA-------KEGGVNS----- 381

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +   L    +   +L G    AL + L   +    + TM+  F          
Sbjct: 382 -IVNTLYE--VKKAYLYGQSRYALAETLKGVVAFSINNTMEEAFNQAIIDAESD 432


>gi|319949906|ref|ZP_08023908.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
 gi|319436430|gb|EFV91548.1| UDP-N-acetylmuramate--L-alanine ligase [Dietzia cinnamea P4]
          Length = 487

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 125/427 (29%), Gaps = 58/427 (13%)

Query: 53  GHDFILHAVQK-GA--GLVVVNTDMVASIGS-------LSIPVFGVDDVL-GALNKLAVA 101
           GH     A++  G+   +VVV+   + +            +PV          L  LA A
Sbjct: 66  GHH--ADALEALGSPPQIVVVSKAAIPADNPELVAARAAGVPVV----TRSQVLGHLARA 119

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
            R       I + G+ GKT+T  ML   + S                +            
Sbjct: 120 GRS------IMVCGTHGKTSTTSMLIAGMLSAGSD---PSFAVGGTVLQFGTNARGGADP 170

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E   S    + +      P + ++T   P HL +F   E            +  TG
Sbjct: 171 VFVAEADESDGSLVHY-----EPDVVILTNAEPDHLDHFGTAEAYYEVFDTFLARIPDTG 225

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF----------QLRKWKQCSEQSW 271
            + +  DD        ++ A G++ +                      +      +  + 
Sbjct: 226 ALVVCVDDEGAAERARRAAAAGVRVVGYRTADGPTTDLPVAGELAGITVDSDGTRARLTL 285

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                    +      +  +    +L    +      D D  +  LS F     R +   
Sbjct: 286 DGGSHGDLHVGTPGEHMALNALAALLAAREVAGAGGFDADGFLAGLSGFGGVGRRFEPKG 345

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
            A+       + + Y  +P  + A +    +I     GR +AV      +   ++ F  +
Sbjct: 346 EAVVGEGRARVYDDYAHHPTEVAAVLGAAREIVEADGGRLVAVFQP--HLYSRTRIFAEE 403

Query: 392 LAEVLSLYNISHVWLS-----------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
               LSL     V +            G     +   +  +  VH+   +D     +   
Sbjct: 404 FGRALSLA--DEVVVLDVYGARERPEPGVDGGLIARNVTAA--VHHVPDLDSALTTVTGI 459

Query: 441 LVDGDVV 447
           L  GDVV
Sbjct: 460 LRPGDVV 466


>gi|318059796|ref|ZP_07978519.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Streptomyces
           sp. SA3_actG]
          Length = 451

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 14/125 (11%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                   +      +++   NP S   A++             + + G     G+ ++ 
Sbjct: 312 HVLEFVAERAGIAFYNDAKATNPYSTLHAVNAFEDRPV------VLIAG-----GKDTKD 360

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDG 444
                    ++  + H+ L G    A+  AL  +        +E         ++    G
Sbjct: 361 ADFTALAAPAMRRVRHLILFGETAGAIHRALIDNGLDLPTTVTEDFTDATATARALSRPG 420

Query: 445 DVVVV 449
           D V+ 
Sbjct: 421 DAVLF 425


>gi|238797574|ref|ZP_04641071.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
 gi|238718571|gb|EEQ10390.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia mollaretii ATCC 43969]
          Length = 461

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 102/352 (28%), Gaps = 27/352 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M+          Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGMVA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +   G I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGKGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWLAR------KVSTDASVYEVFLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A              +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADAC----RVLGDFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGLCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L          ++ A       H+S  +D L   I  +   GD ++V  SN 
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAHWSADIDTLVDMIVKTAQPGDHILV-MSNG 436


>gi|289806271|ref|ZP_06536900.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           AG3]
          Length = 136

 Score = 42.9 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D++YNAN  SM AA+ VLS++     G R+ V+GDM E+G  S++ H+ + E   
Sbjct: 78  NQLVLDDAYNANVGSMTAAVQVLSEMP----GYRVLVVGDMAELGAESEACHLQVGEAAK 133

Query: 398 LYN 400
              
Sbjct: 134 AAG 136


>gi|299769708|ref|YP_003731734.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter sp. DR1]
 gi|298699796|gb|ADI90361.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter sp. DR1]
          Length = 356

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 17/115 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   +L   + G  +G     F+N  S++   +  IA    F        +G  +I  A 
Sbjct: 6   YRLDELAHLVNGELVGTGSLQFINLASLENAETHQIA----FV-------NGEKYIDQAK 54

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AG  +V + +   +         VD+   A   L      +   T + I  +
Sbjct: 55  ASRAGAYIVTSLIKEQLPDKQ-NFIIVDNPYLAFAILTHVFDKK--ITSVGIEST 106


>gi|332290159|ref|YP_004421011.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
 gi|330433055|gb|AEC18114.1| UDP-N-acetylmuramate--L-alanine ligase [Gallibacterium anatis
           UMN179]
          Length = 458

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E                   P   +I  I   H   F  ++ I      +   
Sbjct: 154 KSPFFVIEADEYDTAFFDKRSKFIHYNPKTLIINNIGFDHADIFDDLKAIQRQFHHMIRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I    D++  +   A          +S  +    D +    +  ++ +  EV  
Sbjct: 214 IPSKGRILSFADETSVKETLA-------MGCWSEQQFIGEDKEWFAKRLRNDCTKFEVYH 266

Query: 277 QGKSM-EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           Q + + EV  + +G H   N LM +         ++ + KAL+ F       +R      
Sbjct: 267 QQQKVAEVEWNIVGQHNMFNALMAIAAAYHAGVSIEQSCKALATFV---NANRRLEVKGE 323

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T+ D+  +     ++ + ++ +     G G RI  + +             +LA  
Sbjct: 324 VNGITVYDDFAHH---PVEISATLTALRDKVGGGVRILAVLEPRSNTMKMGVHTKELAPA 380

Query: 396 LSLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L      +V+L     L   + D   + I    ++  +D L   I       D ++V  S
Sbjct: 381 LVRA--DYVFLLQPENLPWQVVDIANQCIQPAVWTADIDLLVDKIVEEAQPTDHILV-MS 437

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   +L++  A
Sbjct: 438 NGS-FGGIHQKILQKLRA 454


>gi|317048967|ref|YP_004116615.1| FolC bifunctional protein [Pantoea sp. At-9b]
 gi|316950584|gb|ADU70059.1| FolC bifunctional protein [Pantoea sp. At-9b]
          Length = 422

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLSLYN--ISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  +          T+D  +   +      
Sbjct: 336 KDIAGTLAALAPQVDSWYCAPLDGPRGATAEQLIAHLASGEAFTTVDSAWQAARQQAKPE 395

Query: 445 DVVVVKSS 452
           DV++V  S
Sbjct: 396 DVILVCGS 403


>gi|166363698|ref|YP_001655971.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Microcystis
           aeruginosa NIES-843]
 gi|189082911|sp|B0JRM9|MURD_MICAN RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|166086071|dbj|BAG00779.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Microcystis
           aeruginosa NIES-843]
          Length = 449

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 62/382 (16%), Positives = 120/382 (31%), Gaps = 47/382 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L +A R    +  + ITG+ GKTTT  +                    +IG       
Sbjct: 94  GELELAWRYLQSSPWLGITGTNGKTTTTALCAAIFQKAGLNAP----SCGNIGYAACELA 149

Query: 156 MPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +  D  D+ I E+    +      +  + P I + TT  P HLS    +E     KA + 
Sbjct: 150 LKADKYDWIIAEISSYQI----ESSRDLSPKIGIWTTFTPDHLSRHQTLENYYQIKASLL 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +  +          +     L+    +   +  ++  + K A           + +W+  
Sbjct: 206 QRSD------RQILNGDDPYLRQIGVSQWQQAYWTSVQGKAALLGDPSRGVYLQDNWIVA 259

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +  +   +   +G H  QN+LM +    +   +     +A++ F        R     
Sbjct: 260 FGELIAPVNLLKMVGSHNQQNLLMAVAAARLAGIEKKAITEAIATFPGV---AHRLEYVC 316

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   N  +    +  +           I + G   + G+        +AE
Sbjct: 317 TYKGLDFINDSKATNYDAAAVGLQSV-------PSPAILIAGGEAKAGDDRAW----IAE 365

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSS--LVDGDVVVV- 449
           +     ++ V L G         L  + +      ETMD             +  VV++ 
Sbjct: 366 I--KAKVATVLLIGDAAADFARRLQSAGYQDYECVETMDRAVQRAAELGPAKEAKVVLLS 423

Query: 450 --KSS---------NSCGFYRL 460
              +S             F +L
Sbjct: 424 PACASFDQYPSFEHRGTHFRQL 445


>gi|67923621|ref|ZP_00517092.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Crocosphaera
           watsonii WH 8501]
 gi|67854545|gb|EAM49833.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Crocosphaera
           watsonii WH 8501]
          Length = 458

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 63/420 (15%), Positives = 115/420 (27%), Gaps = 46/420 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKE 124
            L+VV+  +   I  L        D +G L +LA      S    I    G    T    
Sbjct: 67  KLIVVSPGVPWDIPFLIEAREKNIDTIGEL-ELAWRYLNSSPWVGITGTNGKTTTTALVA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +         +   IG     + +         + D+ I E+           +  + P
Sbjct: 126 AIFQGAKLNAPSCGNIGYAACELALSQLQKDSTSNYDWIIAEVSSYQ----SESSQALSP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I + TT    HL+    +E   + KA +    E                L         
Sbjct: 182 KIGLWTTFTADHLNRHKTLENYYAIKASLLYRSEYQVFNS------DDPYLHQTGLHQWA 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++  K K             + +W+    +      +    G H  QN+LM +    
Sbjct: 236 DAYWTTVKGKENLLCDSSKGVYIQDNWVVAFGELILPLNLFKMPGSHNQQNLLMAIAAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   +      A++ F     R            +    +  +    S            
Sbjct: 296 LAGIEKGAIASAIATFKGVPHR----------LEYITTIDGIDFINDSKATNYDAAEVGL 345

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
              +   I + G   + G+ ++     +A++      + V L G         L  + + 
Sbjct: 346 LSVKSPAILIAGGEGKEGDDNKW----IAQI--KSKAAKVLLIGEAAENFAKRLHDADYH 399

Query: 424 -VHYSETMDGLFLF---IQSSLVDGDVVVV---KSS---------NSCGFYRLINLLLEE 467
                ETMD        I   +    VV++    +S             F  L   L E+
Sbjct: 400 SYEILETMDKAVERSLTIGREVKAK-VVLLSPACASFDQYRSFEHRGDDFKELCQKLKED 458


>gi|319944697|ref|ZP_08018961.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
 gi|319741946|gb|EFV94369.1| UDP-N-acetylmuramate--L-alanine ligase [Lautropia mirabilis ATCC
           51599]
          Length = 489

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 69/431 (16%), Positives = 131/431 (30%), Gaps = 54/431 (12%)

Query: 48  GPHYD-GH--DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           G     GH  + +  A       VVV+T + A    +         V+     LA   +L
Sbjct: 50  GAKVHVGHQAEHVEDA-----DCVVVSTAVRADNPEVRRARARRVPVVPRALMLAELMKL 104

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           +     +AI G+ GKTTT  ++   L+        +     +      +       D+ +
Sbjct: 105 KQG---VAIAGTHGKTTTTSLVASILAKAGLDPTFVIGGRLNS---AGVNARLGSGDYIV 158

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
            E   S    +  L     P IA +T I   H+  +             F          
Sbjct: 159 VEADESDASFLNLL-----PMIAAVTNIDADHMDTYGHDMARLKQAFVDFLNRLPFYGSA 213

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEV 283
           +   D        +      K   ++G  ++A  +    +   ++   +V +     +EV
Sbjct: 214 VLCLDDP---HVREIVPFVSKPTITYGLGEDAQVRAVDVRAEGDRMHFQVLRENEPPLEV 270

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL--------- 334
                G H  +N L  + I + L    +  + AL+ F     R +RY             
Sbjct: 271 SLALSGEHNVRNALAAIAIATELGVKAEAIVAALAEFRGVGRRFERYGEVPVPVREGREG 330

Query: 335 -------NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                         + + Y  +P  ++A +  +    P     R  VL         ++ 
Sbjct: 331 AQAGQTAAASGTFTLIDDYGHHPVEIEATLRAVRGAFP----TRRLVLAFQPHRYSRTRD 386

Query: 388 FHID---LAEVLSLYNISHVWLSGFHVLALKDA--------LPRSIHVHYSETMDGLFLF 436
              D   +  +     ++ V+ +G   +   D         L       +   +  L   
Sbjct: 387 LFEDFVRVLGMADQLILTEVYAAGEPPIVAADGRALVRAVRLASQRDPLFVADVAELPTT 446

Query: 437 IQSSLVDGDVV 447
           +   +  GDVV
Sbjct: 447 VLGLVQPGDVV 457


>gi|302546148|ref|ZP_07298490.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302463766|gb|EFL26859.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Streptomyces
           himastatinicus ATCC 53653]
          Length = 486

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 104/363 (28%), Gaps = 34/363 (9%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R       +A+TG+ GKTTT  ML   L +         +   +IGV L    +
Sbjct: 112 ELAWRLRGPDSPPWLAVTGTNGKTTTVRMLASILEAAGLR----TAAVGNIGVSLLDIVL 167

Query: 157 PVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                D    EL    L         +R H   +  +AP HL     +   A+ K  I+E
Sbjct: 168 GETPYDVLAVELSSYQLHWA----PSLRAHSGAVLNLAPDHLDWHGSMAAYAADKGRIYE 223

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQSWMEV 274
           G         N  D   E L   +          F        QL   +    +++++  
Sbjct: 224 G--NQVACVYNAADPATEDLVRAADVEEGCRAIGFTLGTPGPSQLGVVENILVDRAFVTN 281

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + +          +      N+   L   ++  A                    R     
Sbjct: 282 RQKSAQELAEVADVNPPAPHNIANALAAAALARAYGVPPQAVRDGLRAFRPDPHRVEHVA 341

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           +    + +D+S   N  + +A++     I     G       D   +             
Sbjct: 342 DVEGVSYVDDSKATNTHAAEASLGAYEHIVWVAGGLAKGATFDELVL------------- 388

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDV 446
             +   +    L G     +++AL R         +D                    GD 
Sbjct: 389 -AAAPRLRGAVLIGADRALIREALARHAADVPVVDLDRTDTGAMAAAVREAARLARPGDT 447

Query: 447 VVV 449
           V++
Sbjct: 448 VLL 450


>gi|303229434|ref|ZP_07316224.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515970|gb|EFL57922.1| putative tetrahydrofolate synthase [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 435

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 105/357 (29%), Gaps = 23/357 (6%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
              R +   + I+           +   +  I        +    +     L      VD
Sbjct: 79  YTERIEINDVQISKDAFGNLIDC-VRQGVDKIIADGVEPPTQFEILTAAAFLFFKEQGVD 137

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKT 220
           + + E     LG +   T++V P ++VIT +   H +     +EEIA  KA I +     
Sbjct: 138 YAVVEA---GLGGLLDSTNVVTPVVSVITNVTLDHQAYCGNTVEEIAKHKAGIIKEGVPV 194

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
            T          E    + HA        FG    +            Q      +    
Sbjct: 195 VTAAQEGPLKVIEETAEEQHAPLYVFNKKFGIDSRS-------VVPGGQLITVSAIGAPP 247

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G H + N+   L  V ++    DT  +                        T
Sbjct: 248 AMLFTTMAGIHQSVNLACALQAVRLVMEHDDTISEETMREGFARATWAGRFEIKKTLDRT 307

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ--SFHIDLAEVLSL 398
            I +  +    +    ++         +   +A+L D  EMG + +       +  V + 
Sbjct: 308 FIFDGAHNAAGAESFGMTYHELFGDTPKTMVMAILSDKDEMGIIHEVVKPKDTVIAVAAP 367

Query: 399 YNISHVWLSGFHVLALKDALPRSIHVHYS---ETMDGLFLFIQSSLVDGDVVVVKSS 452
              + V         L + + + +    +   +++         S  DGD++VV  S
Sbjct: 368 TPRTEV------PEKLVETVRQCVKGVVAQTEDSVSSALDLALQSTQDGDIIVVCGS 418


>gi|288940819|ref|YP_003443059.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
 gi|288896191|gb|ADC62027.1| UDP-N-acetylmuramate [Allochromatium vinosum DSM 180]
          Length = 455

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 118/365 (32%), Gaps = 30/365 (8%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A++G+ GKTTT  ML   L          G     + +   ++       F + E   
Sbjct: 105 VLAVSGTHGKTTTASMLAWVLEDAGLD---PGFLIGGVPLDFGVSARLGSAPFFVVEADE 161

Query: 170 SHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                    +  V   P   ++  +   H   F  + +I      +   +  +G I    
Sbjct: 162 YDTAFFDKRSKFVHYGPRTLILNNLEFDHADIFDDLGQIQRQFHHLIRTVPGSGLIVHPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                + +         +T  + G  +       +  +     +       ++  V    
Sbjct: 222 RVPAVDTVIGLGCWTPRETFGAEGDWRA------ELIEPDGSRFRVWLHGAEAGVVDWGQ 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G H  +N L  L         V  A++AL  F   + R +             + + + 
Sbjct: 276 SGLHNVENALAVLAAARHAGVPVGAAVEALGRFQGVKRRLEVRGEVAGIR----VFDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWL 406
            +P ++   +  L        G    +L  + E    +       AE+  SL     V++
Sbjct: 332 HHPTAIATTLDGL----RRRVGAEQRILA-VLEPRSNTMRLGTHNAELAGSLTAADRVYV 386

Query: 407 -----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLI 461
                 G+   A+   L   + VH  + ++ +   + +    GD ++V  SN  GF  + 
Sbjct: 387 HAPSDLGWDAAAVLAGLGERLAVH--DAIEPIVTQVIADSRPGDQILV-MSNG-GFGGIH 442

Query: 462 NLLLE 466
             LL+
Sbjct: 443 QRLLD 447


>gi|237751045|ref|ZP_04581525.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
 gi|229373490|gb|EEO23881.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter bilis ATCC
           43879]
          Length = 451

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/458 (11%), Positives = 116/458 (25%), Gaps = 72/458 (15%)

Query: 29  GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
            I+ D+R +     F  +K P  + H FI    Q    + ++  D +    + +I + G+
Sbjct: 4   HITDDTRKLREDSIF--LKTPQ-NAH-FIESLPQN---IRILERDELKEYFNTNIKLIGI 56

Query: 89  DDVLGALNKLAVAARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
               G     A    +       +A+ G+ G      M         K          + 
Sbjct: 57  TGTNGKTTTAAAIYSVLLDMGYKVALLGTRG------MFINDTRKKPKGLTTPSLLELYE 110

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                     +  DF + E+  S     +   + +   + ++T I   HL      E+ A
Sbjct: 111 D---IDMAANMGCDFFVMEV--SSHAIKQERIYGLEFCLKILTNITSDHLDYHKTWEDYA 165

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
             K +  +  E    I L+                G++           +    +    +
Sbjct: 166 KTKMQFLQSGECIKIINLDDKSGASMRFYPHVLTYGVE----SKGHLFVNAYGLQDGIFA 221

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + S    +   +   +     G     N++     +  +T     +I A          G
Sbjct: 222 QMSLRLQKDSMQECVIESSLFGLFNLYNLMAATLAIHAITKQDIQSICACVKNFG----G 277

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R  +      +I +  +           +              V G     G     
Sbjct: 278 VSGRMEIVSKTPLVIIDFAHTTDG-------MKQVFESFKTKNISVVFGA----GGDRDK 326

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVL-----ALKDALPRSIHVHYSE-------------- 428
              +     + +    ++++  +       ++   + + +                    
Sbjct: 327 SKREKMGACARFYAKKIYITNDNPRSENPLSIAQEIAKGVFAKSLNETDIEIKENTSYEI 386

Query: 429 -------------TMDGLFLFIQSSLVDGDVVVV--KS 451
                                    L    V++V  K 
Sbjct: 387 KSSNAAITMQIILDRKEAIKLALRELQKDWVLLVLGKG 424


>gi|166365245|ref|YP_001657518.1| UDP-N-acetylmuramate--L-alanine ligase [Microcystis aeruginosa
           NIES-843]
 gi|189029000|sp|B0JHH4|MURC_MICAN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166087618|dbj|BAG02326.1| UDP-N-acetylmuramate-alanine ligase [Microcystis aeruginosa
           NIES-843]
          Length = 478

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 57/391 (14%), Positives = 101/391 (25%), Gaps = 28/391 (7%)

Query: 68  VVVNTDMVASIG------SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           V+ +T +            L  P+F   DVL AL               IA+ G+ GKTT
Sbjct: 86  VICSTAINDHNKEYQAARDLGYPIFHRSDVLAALIA---------DYDSIAVAGTHGKTT 136

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I                     F + E   S           
Sbjct: 137 TSSLIGYVLLEAGLDPTIIVGGEVD---AWEGNARLGQGRFLVAEADES-----DGSLTK 188

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF-LNYDDSFFELLKAKSH 240
             P I VIT I   H  ++  + E+     E     +        +     F    + S 
Sbjct: 189 HAPKIGVITNIELDHPDHYQNLSEVIDTFHEFAHQCQILVACLDCDTIAEHFRPTISYSL 248

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  Y+  +       ++           +++++      + + +        L   
Sbjct: 249 DPEKGADYTVSEIIYEQGMMKASVWEKGSYLGQMEVKIPGQHNISNALAVVAIGRYLGLE 308

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             V           K       +           +     L   +        K     +
Sbjct: 309 FAVIADAIATFAGAKRRFEHKGEANGITFIDDYAHHPSELLATLAAAKLKVEGKQYQRSI 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR 420
           +   PH   R  A L +       +    +         NI+HV  +G  V         
Sbjct: 369 AIFQPHRYSRTTAFLEEFGSAFSSADVVVLTDIYSAGEVNINHV--TGQQVAE--QVRKH 424

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             + +Y   +  L  F+   L  GD+ +   
Sbjct: 425 HKNAYYHPELSSLGQFLLEILQPGDLALFLG 455


>gi|157412360|ref|YP_001483226.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9215]
 gi|157386935|gb|ABV49640.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9215]
          Length = 468

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 106/367 (28%), Gaps = 34/367 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L          T  A+ GS GKT+T   L+  L       + I         P+ 
Sbjct: 107 EILAMLMETY------TAFAVAGSHGKTSTSTFLSTILELCTHDSSSITGGII----PIY 156

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +     +  + + E+  S         +  +  I +I  I   H  +FS + E+ S+  
Sbjct: 157 NSNCHLENTKYLVAEVDES-----DGTINQYKSDIGIINNIDFDHCDHFSDLNEVISSFR 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              +  +K    F            +K      K +         + +    K     ++
Sbjct: 212 SFAKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYYEHGNF 271

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +                      N+   +    ++  D     + +      + R +   
Sbjct: 272 VSNLNIPIPGLHNLS--------NITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFEFRG 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +  +       N    ++K     + Q + +   +   +           + F  +
Sbjct: 324 QINERLLYDDYAHHPNEIKETIKLGKLFIKQKNNNEFQKSRLIAIFQPHRYSRVKQFTRE 383

Query: 392 LAEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441
            AE LS  ++ +V   + +G           + D +  ++ +V Y      +        
Sbjct: 384 FAEELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFYELT 443

Query: 442 VDGDVVV 448
             GD+++
Sbjct: 444 QKGDLIL 450


>gi|328462937|gb|EGF34759.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Lactobacillus
           rhamnosus MTCC 5462]
          Length = 389

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 91/317 (28%), Gaps = 30/317 (9%)

Query: 132 SIKKTYACIGSYNNHIGVPLTLA-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            + + +        +IG+P++   +     D  + EL    L         + PHIAV+T
Sbjct: 46  MLNQQWPHHAFDAGNIGIPVSQVAQKAGKDDTIVAELSSFQL----CGIKTLHPHIAVLT 101

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I  AHL          +AK  I           +N+D      L  +S A         
Sbjct: 102 NIYEAHLDWHGNRANYVAAKMRITMNQTPDDYFIMNWDLPEMHQLAKQSQAQ-------- 153

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                +  Q    +      W+                G H  +N L  +    +     
Sbjct: 154 -IVPFSRKQAAGARASLIDGWLTFDGDKIMPASDMQIPGLHNIENALAAIAAAKLKGVSD 212

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   + L  F   + R +       +    + ++S   N  +   A++   Q      G 
Sbjct: 213 DAIREVLRTFSGVKHRIQYLETINGR---RVYNDSKATNVEAATVALNAFQQPIVWLAGG 269

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
               L  M  +              L   ++  + + G     +   L   +    +E +
Sbjct: 270 LDRGLP-MDAL------------TPLVKKHVKSMVVFGQTAPLMAKLLKMPVSRFKTENV 316

Query: 431 DGLFLFIQSSLVDGDVV 447
                    +   GDV+
Sbjct: 317 MTAVPLAYEASRPGDVI 333


>gi|289805212|ref|ZP_06535841.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 391

 Score = 42.9 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 112/364 (30%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 39  VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 96

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 97  DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 152

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 153 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDTSEWEVWLDGEKVGDV--KW 207

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 208 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 267

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 268 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 319

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN  GF  +  
Sbjct: 320 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG-GFGGIHQ 377

Query: 463 LLLE 466
            LL+
Sbjct: 378 KLLD 381


>gi|301155656|emb|CBW15124.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Haemophilus parainfluenzae T3T1]
          Length = 341

 Score = 42.9 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 25/109 (22%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHD--FIL 58
           M   ++  +L   + G   G      VN I+             A+     D +   FI 
Sbjct: 1   MQKSYSLQELATKVGGTPRGNA-DVVVNSIA-------------AL--SKADANQLTFIS 44

Query: 59  HA------VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           +A       +  AG++VV+   V      S  +  V D   A   LA  
Sbjct: 45  NAKFRPLLAESKAGILVVSEADVEFCSPES-NLLIVKDPYVAYAVLAQY 92


>gi|23465882|ref|NP_696485.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
 gi|30316056|sp|Q8G4Q6|MURD_BIFLO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|23326585|gb|AAN25121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum NCC2705]
          Length = 481

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 118/368 (32%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  ++L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 270 VRLAAITDFTHLAEPDGSLYPHLVADVLTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 330 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 385 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 438

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 439 AAAGDIVL 446


>gi|118475066|ref|YP_891273.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
 gi|118414292|gb|ABK82712.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase
           [Campylobacter fetus subsp. fetus 82-40]
          Length = 429

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 51/433 (11%), Positives = 112/433 (25%), Gaps = 52/433 (12%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVD 89
           I+ +S++      F  +K  + +   F   A++ GA ++              I + G+ 
Sbjct: 11  ITDNSKTCESGCFF--LK-SNSNA-KFENDAIKSGAIIITPKRAKTILNLDDGIRLIGIT 66

Query: 90  DVL-GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
                     A+A  LRS    + I+G+ G           +   +     + +      
Sbjct: 67  GTNGKTTTAFAIAFGLRSLGYKVGISGTRG---------AFICDKQIADKGLTTSQILET 117

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           +            + + E+  S     +     +   + V T ++  HL       E A 
Sbjct: 118 LSYIKQAKESGCRYFVMEV--SSHAIAQNRIEGLNFALKVFTNLSQDHLDYHKSFSEYAR 175

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K+            F + D         +S     K    +    +      +      
Sbjct: 176 VKSS-----------FFDDDSPKLINGDDESIKFNHKNTMIYWLKNSDASFFVENYDFKG 224

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                ++ + ++  +  H  G     N+L  +G +  L+                     
Sbjct: 225 GIKANIKSKNETANLQSHLQGKFNLYNLLAAIGSIKFLSRVSLQEA-----ADSVRKFES 279

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                       L+   +   P  ++  +  LS          + V G     G      
Sbjct: 280 VAGRVEIVSKNPLVIVDFAHTPDGIEKVLDALSH------DELVVVFGA----GGDRDKT 329

Query: 389 HIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQS 439
              +   +     S   ++  +            +   +  +  V   E           
Sbjct: 330 KRPIMGKIVQKYASISIVTSDNPRTEDPNSIIDDILAGMQINNSVFSIENRKDAIKKAIE 389

Query: 440 SLVDGDVVVV-KS 451
                 VVV+ K 
Sbjct: 390 LAAGKTVVVLGKG 402


>gi|86606524|ref|YP_475287.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. JA-3-3Ab]
 gi|109892748|sp|Q2JTH3|MURC_SYNJA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|86555066|gb|ABD00024.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. JA-3-3Ab]
          Length = 510

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 111/383 (28%), Gaps = 43/383 (11%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             +A+     + V+   D+L AL       R       I + G+ GKTTT  M+   L +
Sbjct: 107 PELAAALDKGLKVWHRADLLAAL----FNHR-----PSIGVAGTHGKTTTSSMIGYMLLA 157

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  I                    ++ + E+  S           + P I VIT I
Sbjct: 158 AGWDPTLIIGGEMD---AWDGNARLGQGEYLVAEVDES-----DGSLVRLYPQIGVITNI 209

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H  +++ +E++  A  +  +   ++ T+    D               +        
Sbjct: 210 ELDHPDHYANLEQVIRAFQQYGQ---QSQTLVACLDCPNVATHLKVDIGYSLAGHPQAQY 266

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                            S    +      ++    +G H   N L  + +   L  +   
Sbjct: 267 QARQILYTADCT-----SAEIWERGSLLGQLRLQVLGSHNLSNALAAVAVGRQLGLEFAV 321

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK--------AAISVLSQIS 364
              AL+ F   + R +               + Y  +P+ ++            V++   
Sbjct: 322 IASALAEFRGVQRRFEVKGEVGG----VTFIDDYAHHPSEIRATLRAARLQQRRVVAVFQ 377

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-DALPRSIH 423
           PH   R   +  D       +      +  ++  Y        G   L L         H
Sbjct: 378 PHRHSRLAKLFQDFACCFADA-----QVVVIVPTYGAGEAAPEGSDSLRLAVSVAEHHPH 432

Query: 424 VHYSETMDGLFLFIQSSLVDGDV 446
           V Y  ++  L   + S L  GD+
Sbjct: 433 VRYVSSLPQLPQVLPSILQPGDL 455


>gi|168215544|ref|ZP_02641169.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
 gi|182382177|gb|EDT79656.1| FolC bifunctional protein [Clostridium perfringens NCTC 8239]
          Length = 440

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E ++   +  V +   H    +D              V   +     
Sbjct: 339 LGVLGDKQVDEMVEEITK-GVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEA 397

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   + D++++  S   
Sbjct: 398 YNKAYSLTNEDDLLLICGSLYM 419


>gi|299131924|ref|ZP_07025119.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
 gi|298592061|gb|EFI52261.1| UDP-N-acetylmuramate/alanine ligase [Afipia sp. 1NLS2]
          Length = 468

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 136/401 (33%), Gaps = 39/401 (9%)

Query: 64  GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA ++VV+T +      L +     +  V  A   LA   RL+S    IAI G+ GKTTT
Sbjct: 66  GADVLVVSTAIKRDNPELMAARAQRIPVVRRA-EMLAELMRLKS---CIAIAGTHGKTTT 121

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             M+   L +       I     +              D+ + E   S           +
Sbjct: 122 TSMVATLLDAGALDPTVINGGIIN---AYGTNARLGAGDWMVVEADES-----DGTFLKL 173

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
              +A++T + P HL +F   E +  A     EG+   G   +  D +  + L  K    
Sbjct: 174 PVDVAIVTNVDPEHLDHFKTFEAVQEAFRHFVEGVPFYGFAVMCIDHAVVQALVGKIEDR 233

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-------SMEVVHHGIGYHMAQN 295
               I ++G++  AD +L   +  +  S  +V+++ +         ++V    G H A N
Sbjct: 234 ---RIITYGENPQADARLVDLQPFTGGSKFKVEIRHRKAGAAHVISDLVLPMPGRHNALN 290

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               + +   +    +   KAL+ F   + R  R            + + Y  +P  + A
Sbjct: 291 ATAAIAVAYEVGMSDEAIRKALAGFGGVKRRFTRTGEWNG----VTVIDDYGHHPVEIAA 346

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYNISHVWLSGF----- 409
            +          +GR IAV+         S                ++ V+ +G      
Sbjct: 347 VLKAA---RDSTKGRVIAVVQPHRYTRLQSLFEEFCTCFNDADTVVVADVYPAGEAPIPG 403

Query: 410 -HVLALKDALPRSIHVHYS--ETMDGLFLFIQSSLVDGDVV 447
               +    L    H      E    L   ++     GD V
Sbjct: 404 IDRDSFVLGLRAHGHREVIPLEGASQLASIVRRIAQPGDFV 444


>gi|307720218|ref|YP_003891358.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978311|gb|ADN08346.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 431

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 52/415 (12%), Positives = 111/415 (26%), Gaps = 64/415 (15%)

Query: 66  GLVVVNTDMVASIGSLSIP---VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             V+ + +      +       +  ++D+              +K  II ITG+ GKTTT
Sbjct: 25  AFVLTHQNRAYLEDAKQHNAHSIIKIEDIAELFGV--------NKIKIIGITGTNGKTTT 76

Query: 123 KEMLT------------IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE---L 167
              +                  +                 L   +          E   +
Sbjct: 77  ASAIYSFLLDLGYKAALQGTRGLFMNDEVCEGKTLTTPSVLNTYKHIYQAVCAGCEYFIM 136

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
            +S    ++     ++  + ++T I   HL     IEE  + K             F   
Sbjct: 137 EVSSHALVQRRIEGLKFELKILTNITQDHLDYHKTIEEYIAVKNG-----------FFQD 185

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +            A   K  Y++G    A ++L  +      S +    Q          
Sbjct: 186 ESKKLINKDEPKAAFNFKNAYTYGIENPATYRLMAYSLNEGSSGIIQHFQEIVPFTASLH 245

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
             +++   M        I    ++     +  F    GR ++   A N     ++D ++ 
Sbjct: 246 GFFNLYNLMAAIAATHLITDKTLEEIADVVDNFAGVSGRMEQVCAAPN----VIVDFAHT 301

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            +         +   ++   E   I V G     G         +   ++      V ++
Sbjct: 302 PDG--------MQQVLNALKEKELIVVFGA----GGDRDRLKRPIMGRVAASLAKKVIVT 349

Query: 408 GFHVLA---------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +            + + +    ++                  D +VVV+  K 
Sbjct: 350 SDNPRHEDPEIIIDDILEGIQDKTNIIVELNRKKAIQMALDMQEDEEVVVILGKG 404


>gi|170023773|ref|YP_001720278.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis YPIII]
 gi|169750307|gb|ACA67825.1| FolC bifunctional protein [Yersinia pseudotuberculosis YPIII]
          Length = 434

 Score = 42.5 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 148 GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKA---GVFRGGKPAVVGEPD 204

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   +  LG +        K +  +    ++  +Q       Q    ++    +  
Sbjct: 205 MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCDERQLTGLPVPN 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L ++      +       ++    +      R  +      LI +  +   
Sbjct: 265 VPLANAATALAVLHYSELPLSD----EAIRQGLQAASLPGRFQVVSEQPLLILDVAHNPH 320

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +   I+P    ++  V   +  + +       D+A  L+     +   + + 
Sbjct: 321 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSD------KDIAGTLACLSERVDEWYCAP 374

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +        +       ++  +          DVV+V  S
Sbjct: 375 LEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGS 421


>gi|291544049|emb|CBL17158.1| UDP-N-acetylmuramate--L-alanine ligase [Ruminococcus sp. 18P13]
          Length = 471

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 54/402 (13%), Positives = 115/402 (28%), Gaps = 48/402 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             ++ +   + +  +  +PV         L  +  +    +    I I G+ GKTTT  M
Sbjct: 76  AAIMADNPELIAAKASGVPVLE----RSELLGIVTSKYDNA----ICICGTHGKTTTTSM 127

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPH 185
               L +     +            +  +      D  + E       E       + P 
Sbjct: 128 AAQILFTAGVDLSAFIGGKLPC---IGGSGRAGKSDIMVCESC-----EFVDTFLKLYPD 179

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           +AVI  +   HL  F  +E +  +  +  E   +T     N  ++     +     +  K
Sbjct: 180 VAVILNVDADHLDYFGTLENVIKSFHKFAEKASRTVIYNGNDSNT-----RKAVEGISGK 234

Query: 246 TIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSI 305
            + +FG + + D+   + +  S      + +               +   +     I + 
Sbjct: 235 EMITFGNTPDCDYYAAQVQHVSGMETHFIAMHHDKPMGEIVLHVAGIHNVLNAMAAIAAA 294

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM-------KAAIS 358
             A V        +   +    +  + A   G   + D +++    ++            
Sbjct: 295 DHAGVPFDAIQKGLCEFRGAGRRFEKVAQVGGITVVDDYAHHPAELTVTLNAAKEMGYRH 354

Query: 359 VLSQISPHGEGRRIAVLGDMCE-------------MGELSQSFHIDLAEVLSLYNISHVW 405
           V +   P    R   +L D  +             MG   ++ +      L+      VW
Sbjct: 355 VWAVFQPFTFSRTAMLLDDFAKALSIADTAVLTDIMGSREKNTYHIFTRNLAEKIPGCVW 414

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                    +D              D +  +I      GD+V
Sbjct: 415 FP-------QDETEEPNDTRKYHNFDQVCDYICKHAQPGDLV 449


>gi|160900370|ref|YP_001565952.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Delftia
           acidovorans SPH-1]
 gi|226740721|sp|A9BMM2|LPXD_DELAS RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|160365954|gb|ABX37567.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase [Delftia
           acidovorans SPH-1]
          Length = 335

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 14/107 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M+ L     +L A+ G  +G   +  ++ I+ +DS      +  F +          +  
Sbjct: 1   MSVL--LGQILDALGGELVGGDREMPISRIAPLDS--AGAGDLSFLSNP-------RYRQ 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLR 105
                 A  V+V    +  +         V D      +     +  
Sbjct: 50  QLAASEAACVIV-APAMRELAQQRGACIVVPDPYAYFARATQWWKRN 95


>gi|317483069|ref|ZP_07942070.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
 gi|291516664|emb|CBK70280.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum F8]
 gi|316915475|gb|EFV36896.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 481

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 116/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A +          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAAAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 270 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 330 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 385 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 438

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 439 AAAGDIVL 446


>gi|282897613|ref|ZP_06305613.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Raphidiopsis
           brookii D9]
 gi|281197536|gb|EFA72432.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Raphidiopsis
           brookii D9]
          Length = 466

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 107/384 (27%), Gaps = 37/384 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + ++ +A R       + ITG+ GKTTT  +      +        G+    +     
Sbjct: 91  ETMGEMELAWRQMQDIPWVGITGTNGKTTTTALTAAIFQAAGLYAPACGNIGYAVAEVAL 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +       +     S+  E  +    + P+I + TT  P HL+    +E     KA+
Sbjct: 151 EVALGAKPPDWVIGELSSYQIESSWS---LSPYIGIWTTFTPDHLARHKTLENYYDIKAK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +            +   S               ++   G          +     E+   
Sbjct: 208 LLTNSRLQIINGDDAYLSKVG--LQHWSHAYWTSVKGLGHLIGGKGFYIESGWVMEKLSA 265

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + + Q          +G H  QN+LM++G   +    +      +  F     R    + 
Sbjct: 266 DSKPQPIVAVTDLKMVGEHNQQNLLMSVGAARLAGISIPAINYGVQQFPGVPHR---LQH 322

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  + +  ++ +       +   I + G   + G+ +       
Sbjct: 323 VCTWEGIEFINDSKATNYDAAEVGLTSV-------KSPTILIAGGEAKAGDDTGWLKR-- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLFLFIQSSLVDG--DVVV 448
                    + V L G         L      +    ETM+                 ++
Sbjct: 374 ----IQEKTAAVLLIGSAAETFSKRLENLGYGNFEIVETMEKAIPRAAQLAKQHQATTIL 429

Query: 449 V---KSS---------NSCGFYRL 460
           +    +S             F  L
Sbjct: 430 LSPACASFDQYANFEVRGDHFQEL 453


>gi|50084558|ref|YP_046068.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter sp. ADP1]
 gi|60389981|sp|Q6FCG5|LPXD_ACIAD RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|49530534|emb|CAG68246.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter sp. ADP1]
          Length = 356

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 17/118 (14%)

Query: 2   NPLWTFHDLLQAIQGHSIGIVPQGFVNGISI----DSRSIAPQEAFFAIKGPHYDGHDFI 57
            P ++   L   +QG   G      ++G++      S  I+    F        +G  ++
Sbjct: 3   IPHYSLETLAHLVQGELFG-DEHFNLSGLASLEQAQSHHIS----FV-------NGEKYV 50

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
             A Q  AG ++V +     + +       V +   A  +L      +     I  T 
Sbjct: 51  EAAKQSKAGALIVTSAFKDQLPASQ-NYIVVKNPYLAFAQLTHVFEKKMTQRGIESTA 107


>gi|262279355|ref|ZP_06057140.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter calcoaceticus RUH2202]
 gi|262259706|gb|EEY78439.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter calcoaceticus RUH2202]
          Length = 356

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID---SRSIAPQEAFFAIKGPHYDGHDFILHAV 61
           +   +L   + G  +G     F+N  S++   +  IA    F        +G  +I  A 
Sbjct: 6   YRLDELAHLVNGELVGTGSLQFINLASLENAETHQIA----FV-------NGEKYIDQAK 54

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AG  +V + +   +         VD+   A   L      +   T++ I  +
Sbjct: 55  ASRAGAYIVTSLIKEQLTDKQ-NFIIVDNPYLAFAILTHVFDKK--MTLVGIEST 106


>gi|226940889|ref|YP_002795963.1| cyanophycin synthetase [Laribacter hongkongensis HLHK9]
 gi|226715816|gb|ACO74954.1| ATP-grasp enzyme-like D-alanine-D-alanine ligase [Laribacter
           hongkongensis HLHK9]
          Length = 856

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 121/383 (31%), Gaps = 47/383 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTL 153
              +  ++A++G+ GKTTT  +    ++   K                  +     P + 
Sbjct: 467 DNGRIPVVAVSGTNGKTTTVRLSAHLIAQTGKRMGMTVTDGVYVNGRQIDSGDCSGPRSA 526

Query: 154 AR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIAS 208
               M  DVD  +FE      G +R      R  +AV+T +        +    ++E+A 
Sbjct: 527 RNVLMHPDVDAAVFETA--RGGMLREGLGFDRCDVAVVTNVGEGDHLGLNYIYTLDELAV 584

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK---- 264
            K+ + + +  +G   LN  D     + A          +          + +  +    
Sbjct: 585 LKSIVVQNVSPSGMAVLNAADPMVARMAASCPGSVTFFAHDGHHPVINAHRAQGRRVIYV 644

Query: 265 -----QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                 C+E   + +      + +   G      +N +  +G    L    +     L+ 
Sbjct: 645 EDGQIVCAEGGDVRMTFDLAQVPLTAGGRIAFQIENSMGAVGAAWALGIAQEQIAAGLAS 704

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F              +    TLI + Y  NP +M+A +  +  +   G+ R + + G   
Sbjct: 705 FVSDAATAPGRFNLFDYRGATLIAD-YGHNPDAMQALVQAVETLP--GQRRIVVISGA-- 759

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSET 429
             G+           +L       V L           G  V  L++ L  +      + 
Sbjct: 760 --GDRRDEDIRRQTRIL-GTAFDEVVLYQDACQRGRADGEVVALLREGLEGAPRTRQIDE 816

Query: 430 MDG---LFLFIQSSLVDGDVVVV 449
           + G         + L  GD+ ++
Sbjct: 817 IQGEFLAIDTALARLTPGDLCLI 839


>gi|303252423|ref|ZP_07338588.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648696|gb|EFL78887.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-
           medo-diaminopimelate ligase [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 454

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 89/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 154 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 213

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G I     D   +             + S+ + +      + + +         ++
Sbjct: 214 MPSSGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFAKPISADCSHFEV 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 265 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 324

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 325 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 380

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D +   I       D ++V  S
Sbjct: 381 LVDANAVFVYQPDTIPWAVSVITDNLTQ--PAKWSADLDEVVKMIVEEAKPTDHILV-MS 437

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 438 NG-AFGGIHQKLLQALKA 454


>gi|85716987|ref|ZP_01047950.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Nitrobacter sp. Nb-311A]
 gi|85696189|gb|EAQ34084.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Nitrobacter sp. Nb-311A]
          Length = 372

 Score = 42.5 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 11/100 (11%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++  +     +        + G+ S+D           A     +D H +       
Sbjct: 24  TLAEIAASTGAQLVDASRGSLRITGLASLD----QAGPMHLAF----FDNHKYAEQLAAT 75

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
            AG  +V+     +     + V        A   +A    
Sbjct: 76  KAGACLVS-PRFEADVPGHVAVLRSKAPFRAFVSIARDFH 114


>gi|168214161|ref|ZP_02639786.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
 gi|170714382|gb|EDT26564.1| FolC bifunctional protein [Clostridium perfringens CPE str. F4969]
          Length = 440

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 339 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEA 397

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   + D++++  S   
Sbjct: 398 YNKAYSLTNEDDLLLICGSLYM 419


>gi|168208619|ref|ZP_02634244.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712998|gb|EDT25180.1| FolC bifunctional protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 440

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 339 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEA 397

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   + D++++  S   
Sbjct: 398 YNKAYSLTNEDDLLLICGSLYM 419


>gi|110800658|ref|YP_696598.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
 gi|110675305|gb|ABG84292.1| FolC bifunctional protein [Clostridium perfringens ATCC 13124]
          Length = 441

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 340 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEA 398

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   + D++++  S   
Sbjct: 399 YNKAYSLTNEDDLLLICGSLYM 420


>gi|22125497|ref|NP_668920.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis KIM 10]
 gi|45442184|ref|NP_993723.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis biovar Microtus str. 91001]
 gi|21958393|gb|AAM85171.1|AE013763_5 dihydrofolate:folylpolyglutamate synthetase [Yersinia pestis KIM
           10]
 gi|45437048|gb|AAS62600.1| putative FolC bifunctional protein [Yersinia pestis biovar Microtus
           str. 91001]
          Length = 460

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 174 GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKA---GVFRGGKPAVVGEPD 230

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   +  LG +        K +  +    ++  +Q       Q    ++    +  
Sbjct: 231 MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN 290

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L ++      +       ++    +      R  +      LI +  +   
Sbjct: 291 VPLANAATALAVLHYSELPLSD----EAIRQGLQAASLPGRFQVVSEQPLLILDVAHNPH 346

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +   I+P    ++  V   +  + +       D+A  L+     +   + + 
Sbjct: 347 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSD------KDIAGTLACLSERVDEWYCAP 400

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +        +       ++  +          DVV+V  S
Sbjct: 401 LEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGS 447


>gi|309812672|ref|ZP_07706416.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
 gi|308433367|gb|EFP57255.1| UDP-N-acetylmuramate--L-alanine ligase [Dermacoccus sp. Ellin185]
          Length = 479

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 64/395 (16%), Positives = 125/395 (31%), Gaps = 34/395 (8%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           GA +++ +    A+   + +   G+  VL     LA+  R       +A+ G+ GKTTT 
Sbjct: 80  GAVVLISSAINEANPELVEVRRRGLP-VLHRSQGLAMLMRA---GRGLAVAGANGKTTTS 135

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            M T AL +  +               L +   P + +  + E   S          +  
Sbjct: 136 GMATAALVAAGEK---PSFAIGANVAGLGVNAAPGEGEIFVVEADES-----DGSFVVYH 187

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P +A++T I   HL  +     +A A       +   G +    DD       A+     
Sbjct: 188 PQVAIVTNIKDDHLDFYGTSANLARAYETFAATIAPQGLLVACADDEGSLA-LAQRRRAA 246

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              + ++G+  +AD ++           M ++      +V  H  G H   N       +
Sbjct: 247 GARVLTYGRDTDADVRIVAESGEGFDWRMSLRDGDAVHDVALHVPGAHNLLNAAGVYTAL 306

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                     +   +          R      +     + + Y  NP  + A +   + +
Sbjct: 307 VHGFGLAPADV---ARGLGAFRGTSRRFEPRGEAGGVRVVDDYAHNPGKLDALVRTAAGL 363

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-----------SGFHVL 412
              GE      L  + +    S++ H       +L    H ++           +G    
Sbjct: 364 KDDGE------LIVIFQPHLYSRTQHAATGLAAALDGADHAFVLDVYGAREQPVAGVSGA 417

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            + D +       ++ T D     +      GD+V
Sbjct: 418 LITDRMTSG-RGEFTPTADDALARVLDVARPGDLV 451


>gi|262340960|ref|YP_003283815.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272297|gb|ACY40205.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 415

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/94 (10%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLALKDAL 418
            Q+      +   VLG + E        +  +          I   +      + +    
Sbjct: 310 HQLKKESYNKLHLVLGFVKEKEVEKLLKYFPIESFYYFCQPKIDRKFPIDDLKILVHKMF 369

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                + +  +++  FL  +      D++++  S
Sbjct: 370 KNRSKISFYSSVEKAFLSAKERADKNDLILISGS 403


>gi|261338915|ref|ZP_05966773.1| hypothetical protein ENTCAN_05113 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318740|gb|EFC57678.1| UDP-N-acetylmuramate--alanine ligase [Enterobacter cancerogenus
           ATCC 35316]
          Length = 491

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 46/394 (11%), Positives = 97/394 (24%), Gaps = 37/394 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
             + +     IPV        A   LA   R R     IA+ G+ GKTTT  M++   + 
Sbjct: 93  PEIVAAHEARIPVI-----RRA-EMLAELMRFRHG---IAVAGTHGKTTTTAMVSSIYAE 143

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
                  +            +        + I E   S    +      ++P +A++T I
Sbjct: 144 AGLDPTFVNGGLVK---AAGVHARLGHSRYLIAEADESDASFLH-----LQPMVAIVTNI 195

Query: 193 APAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-- 249
              H+  +    E +          L   G   +  DD     L  +         +S  
Sbjct: 196 EADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQITTYGFSED 255

Query: 250 ----------FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                      G   +     +  +          +    +              +  + 
Sbjct: 256 ADVRVEEYKQSGAQGHFTLARQDKELLHVTLNAPGRHNALNAAAAVAVATEEGIDDEAIL 315

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S                    G+        + G      ++      +     ++
Sbjct: 316 RALESFQGTGRRFDFLGEFPLDAVNGKSGSAMLVDDYGHHPTEVDATIKAARAGWPDKNL 375

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +    PH   R   +  D   +     +  +          I      G    +L   + 
Sbjct: 376 VMIFQPHRFTRTRDLYDDFANVLSQVDTLLMLDVYSAGETPI-----PGADSRSLCRTIR 430

Query: 420 RSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
               V          +   +   L   D+++++ 
Sbjct: 431 GRGKVDPILVPEPAQVAEILAPVLTGNDLILIQG 464


>gi|17231604|ref|NP_488152.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Nostoc sp.
           PCC 7120]
 gi|30316088|sp|Q8YPS9|MURD_ANASP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|17133247|dbj|BAB75811.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Nostoc sp. PCC
           7120]
          Length = 462

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 137/417 (32%), Gaps = 49/417 (11%)

Query: 63  KGAG--LVVVNTDMVASIGSLSIPVFGVDDV-LGALNKLAVAARLRSKATIIAITGSVGK 119
            GA   L++V+  +   I  L        D+ +  + ++ +A R       + ITG+ GK
Sbjct: 61  AGALPDLIIVSPGVPWDIPDL----VKARDLGIETIGEMELAWRHLKSLPWVGITGTNGK 116

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  ++     +        G+          +A   +  D+ I E+    +      +
Sbjct: 117 TTTTALIAAIFQAAGFDAPACGNIGY---AACEVALAEIPPDWIIGEMSSYQI----ESS 169

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             + PHI++ TT  P HL+    +E     KA++     ++     N DD++   + A  
Sbjct: 170 VTLAPHISIWTTFTPDHLARHKTLENYYDIKAKLL---RQSHLQVFNGDDAYLSKIGASH 226

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                 T     +S   +           +       Q          +G H  QN+LM 
Sbjct: 227 WPDAYWTSVQGKESLLGEKGFYIEDGWVVEQLPNSPPQRIVEASALRMVGAHNLQNLLMA 286

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +     +   KA+  F        R            I++S   N  + +  ++ 
Sbjct: 287 VAAARLADISPNAIDKAVREFPGV---AHRLEHICTWEGIDFINDSKATNYDAAEVGLAS 343

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP 419
           +       +   + + G   + G+ +      LA++ +  +   V L G    A    L 
Sbjct: 344 V-------KSPVVLIAGGEAKPGDDTAW----LAKIQAQTS--AVLLIGSAAPAFAQRLK 390

Query: 420 RSIHVHY--SETMDGLFLFIQSSLVDGD--VVVV---KSS---------NSCGFYRL 460
              + HY   ETM+                VV++    +S             F  L
Sbjct: 391 EVGYTHYEIVETMEKAVRRSLELAKHHQAPVVLLSPACASFDQYPNFEARGDHFREL 447


>gi|257456337|ref|ZP_05621534.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
 gi|257446423|gb|EEV21469.1| UDP-N-acetylmuramyl-tripeptide synthetase [Treponema vincentii ATCC
           35580]
          Length = 202

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 18/120 (15%)

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P+S +  +  + +      GR IAV G     G    +        ++      + 
Sbjct: 51  YAHTPSSFQLIMPPVRERIKAKGGRVIAVFGS----GGERDTVKRPEQGRIAAEYCDTII 106

Query: 406 LSGFHVLA---------LKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+               + +  P                      S     D V++  K 
Sbjct: 107 LTDEDPRGEDPVELLEMIAEGCPDKKRGEELFIIPDRPTAIRKAFSLAQANDAVLLLGKG 166


>gi|182624400|ref|ZP_02952184.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
 gi|177910403|gb|EDT72780.1| FolC bifunctional protein [Clostridium perfringens D str. JGS1721]
          Length = 441

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 340 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEDLYIKVKKYVKEVFKFKDYKEA 398

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   + D++++  S   
Sbjct: 399 YNKAYSLTNEDDLLLICGSLYM 420


>gi|167582305|ref|ZP_02375179.1| FtsJ-like methyltransferase [Burkholderia thailandensis TXDOH]
          Length = 220

 Score = 42.5 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+  ++  V         L   A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----EAVLH-QLEEVLAGRSVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 194


>gi|254298037|ref|ZP_04965490.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
 gi|157807431|gb|EDO84601.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 406e]
          Length = 210

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 80  ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 132

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 133 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 184


>gi|299856869|pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
 gi|302148870|pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
           Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
           YERSINIA PESTIS C092
 gi|319443819|pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
           MN ION FROM Yersinia Pestis C092
 gi|321160049|pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
           SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
           L-Glutamate Bound
          Length = 437

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 151 GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKA---GVFRGGKPAVVGEPD 207

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   +  LG +        K +  +    ++  +Q       Q    ++    +  
Sbjct: 208 MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN 267

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L ++      +       ++    +      R  +      LI +  +   
Sbjct: 268 VPLANAATALAVLHYSELPLSD----EAIRQGLQAASLPGRFQVVSEQPLLILDVAHNPH 323

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +   I+P    ++  V   +  + +       D+A  L+     +   + + 
Sbjct: 324 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSD------KDIAGTLACLSERVDEWYCAP 377

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +        +       ++  +          DVV+V  S
Sbjct: 378 LEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGS 424


>gi|148657887|ref|YP_001278092.1| UDP-N-acetylmuramate--alanine ligase [Roseiflexus sp. RS-1]
 gi|189029029|sp|A5UZT9|MURC_ROSS1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|148569997|gb|ABQ92142.1| UDP-N-acetylmuramate--L-alanine ligase [Roseiflexus sp. RS-1]
          Length = 468

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 64/429 (14%), Positives = 127/429 (29%), Gaps = 62/429 (14%)

Query: 51  YDGHDFILHAVQKGAGLVVV------NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           +DGHD    A   GA  +V       +   +++  +  IPV    D+           R 
Sbjct: 49  HDGHD---PAWIAGADALVATSAVRDDHVELSAARARGIPVLRRADL----------WRE 95

Query: 105 -RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
              +  ++A+ G+ GKTTT  ++ + L+                      AR        
Sbjct: 96  WSQQRRVVAVAGTHGKTTTTALIALMLTQAGGNP--GFLIGGETPDLGIHARWGDPAAPL 153

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E       E       + P +AV+T +   H+  +   +   +A       + +   +
Sbjct: 154 VVEAD-----EYDRTFLALTPDVAVMTNVEWDHVDIYPSPDNYEAAFRLFTRRVAQPQRL 208

Query: 224 FLNYDDSFFELLKAKSHALG------IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +  DD     +     A        I    +  +    D+     +     +  ++   
Sbjct: 209 IVCGDDPGALRVANHPDAQQYGIEEAIARNPASCRLAPMDWMAANVRYDGAMTNFDLWRY 268

Query: 278 GKSM-------EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +               +G H  +N L  + + ++L  + D    AL+ +     R    
Sbjct: 269 DRRTFGARLDGTYTMRLVGDHNVRNALAAIAVATLLGVERDAIADALAAYRGARRRFD-- 326

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +     I + Y  +P   +A ++      P        V+         +Q+   
Sbjct: 327 --IKGEANGITIIDDYAHHPTEARATLAAARARFPQR----RLVVYLQPHTFSRTQALRD 380

Query: 391 DLAEVLSLYNISHVWLSGF--------HVLALKDALPRSIH---VHYSETMDGLFLFIQS 439
             A+     +   V   G             +  AL   I    V     +      I  
Sbjct: 381 AWADAFDHAD---VVRIGDVYPARETGDPRTVAHALAGCIRHNDVQAVGNVVEAAATIGG 437

Query: 440 SLVDGDVVV 448
            L  GDV++
Sbjct: 438 LLRPGDVLL 446


>gi|300741263|ref|ZP_07071284.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|311113338|ref|YP_003984560.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
 gi|300380448|gb|EFJ77010.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           dentocariosa M567]
 gi|310944832|gb|ADP41126.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Rothia
           dentocariosa ATCC 17931]
          Length = 533

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 53/367 (14%), Positives = 113/367 (30%), Gaps = 46/367 (12%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDF 162
            R     + +TG+ GKTTT  M+   L +  K          ++G+P   A    +  +F
Sbjct: 159 GRVTPKWLCLTGTNGKTTTVGMVDSILKAAGK----KSLQVGNVGMPAVYAVADDEPYEF 214

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
              EL    L         + P+ +V+  +A  H+      E   + KA ++E  +    
Sbjct: 215 FAVELSSFQLHWTS----SLSPYASVVLNVAEDHVDWHGSFEAYKADKARVYENTQAACI 270

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
              ++ D+   + +A           S  +  +            ++++++ +       
Sbjct: 271 FNTDHADTLRMVEEADVIEGARAIGISSTEIPSVSMLGLAENIIVDRAFLKNRYSEALEL 330

Query: 283 VVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            V                +   L   ++  A               +    R +  L + 
Sbjct: 331 GVLEDLAPVPGQAPAQHTVENALAAAALCRAANIAPEAVRDGLRSYKPGAHRNQTVLYRD 390

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   NP +  A++S    +     G    V             +   +A+  S
Sbjct: 391 GIQWVNDSKATNPHAANASMSAYPSLIWIAGGLSKGV------------EYDDLIAQHAS 438

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSET----------------MDGLFLFIQSSL 441
                 V + G     LK +L +  +  +  T                M+   +  +   
Sbjct: 439 RLK--AVLIIGTDTAGLKTSLAK--YASHVPTYNMTASANDPSDGVTVMEAAVVKAEELA 494

Query: 442 VDGDVVV 448
            +GD V+
Sbjct: 495 AEGDTVL 501


>gi|51596934|ref|YP_071125.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis IP 32953]
 gi|108808070|ref|YP_651986.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Antiqua]
 gi|108812340|ref|YP_648107.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|145599270|ref|YP_001163346.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Pestoides F]
 gi|149365243|ref|ZP_01887278.1| putative FolC bifunctional protein [Yersinia pestis CA88-4125]
 gi|153946898|ref|YP_001400402.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis IP 31758]
 gi|162420180|ref|YP_001604966.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis Angola]
 gi|165925178|ref|ZP_02221010.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937105|ref|ZP_02225670.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008332|ref|ZP_02229230.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214243|ref|ZP_02240278.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167421185|ref|ZP_02312938.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424419|ref|ZP_02316172.1| FolC bifunctional protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469036|ref|ZP_02333740.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis FV-1]
 gi|186896015|ref|YP_001873127.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pseudotuberculosis PB1/+]
 gi|218929841|ref|YP_002347716.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia pestis CO92]
 gi|229838339|ref|ZP_04458498.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895369|ref|ZP_04510542.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Pestoides A]
 gi|229898905|ref|ZP_04514050.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902695|ref|ZP_04517812.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|270490130|ref|ZP_06207204.1| bifunctional protein FolC [Yersinia pestis KIM D27]
 gi|294504646|ref|YP_003568708.1| putative FolC bifunctional protein [Yersinia pestis Z176003]
 gi|51590216|emb|CAH21853.1| dihydrofolate synthase / folylpolyglutamate synthase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775988|gb|ABG18507.1| FolC bifunctional protein [Yersinia pestis Nepal516]
 gi|108779983|gb|ABG14041.1| putative FolC bifunctional protein [Yersinia pestis Antiqua]
 gi|115348452|emb|CAL21388.1| putative FolC bifunctional protein [Yersinia pestis CO92]
 gi|145210966|gb|ABP40373.1| FolC bifunctional protein [Yersinia pestis Pestoides F]
 gi|149291656|gb|EDM41730.1| putative FolC bifunctional protein [Yersinia pestis CA88-4125]
 gi|152958393|gb|ABS45854.1| FolC bifunctional protein [Yersinia pseudotuberculosis IP 31758]
 gi|162352995|gb|ABX86943.1| FolC bifunctional protein [Yersinia pestis Angola]
 gi|165914968|gb|EDR33580.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165922785|gb|EDR39936.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992714|gb|EDR45015.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204599|gb|EDR49079.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960674|gb|EDR56695.1| FolC bifunctional protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167056301|gb|EDR66070.1| FolC bifunctional protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|186699041|gb|ACC89670.1| FolC bifunctional protein [Yersinia pseudotuberculosis PB1/+]
 gi|229680142|gb|EEO76241.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Nepal516]
 gi|229688453|gb|EEO80524.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694705|gb|EEO84752.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701677|gb|EEO89703.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis Pestoides A]
 gi|262362707|gb|ACY59428.1| putative FolC bifunctional protein [Yersinia pestis D106004]
 gi|262366634|gb|ACY63191.1| putative FolC bifunctional protein [Yersinia pestis D182038]
 gi|270338634|gb|EFA49411.1| bifunctional protein FolC [Yersinia pestis KIM D27]
 gi|294355105|gb|ADE65446.1| putative FolC bifunctional protein [Yersinia pestis Z176003]
 gi|320014569|gb|ADV98140.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 434

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 148 GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKA---GVFRGGKPAVVGEPD 204

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   +  LG +        K +  +    ++  +Q       Q    ++    +  
Sbjct: 205 MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L ++      +       ++    +      R  +      LI +  +   
Sbjct: 265 VPLANAATALAVLHYSELPLSD----EAIRQGLQAASLPGRFQVVSEQPLLILDVAHNPH 320

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +   I+P    ++  V   +  + +       D+A  L+     +   + + 
Sbjct: 321 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSD------KDIAGTLACLSERVDEWYCAP 374

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +        +       ++  +          DVV+V  S
Sbjct: 375 LEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGS 421


>gi|293611410|ref|ZP_06693706.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826282|gb|EFF84651.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 457

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 121/419 (28%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIVAAQHVGVTLEQACEALSNFGGVKRRMELLGTVNGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAASN--HAQVSRSLDEIIKRIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|282899451|ref|ZP_06307418.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195715|gb|EFA70645.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 466

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 102/352 (28%), Gaps = 23/352 (6%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + ++ +A R       + ITG+ GKTTT  +      +        G+    +     
Sbjct: 91  ETMGEMELAWRQLQNIPWVGITGTNGKTTTTALTAAIFQAAGFHAPACGNIGYAVAEVAL 150

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
              +       +     S+  E  +    + PHI + TT  P HL+    +E+    KA+
Sbjct: 151 QVALGAKPPDWVIGELSSYQIESSWS---LSPHIGIWTTFTPDHLARHKTLEDYYDIKAK 207

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +            +   S               ++   G          +    +E+   
Sbjct: 208 LLRNSRLQIINGDDAYLSKVG--LQHWPHAYWTSVKGLGHLIGGKGFYIENGWVTEKLSA 265

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           + + Q          +G H  QN+LM++G   +   ++      +  F     R    + 
Sbjct: 266 DSEPQPIVAVTDLKMVGEHNQQNLLMSVGAARLAGIEIAAINHGVQQFPGVPHR---LQH 322

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  + +  +  +       +   I + G   + G+ +       
Sbjct: 323 VCTWEGIQFINDSKATNYDAAEVGLKSV-------KSPTILIAGGEAKAGDDTGWLKR-- 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP--RSIHVHYSETMDGLFLFIQSSLV 442
                    + V L G         L      +    ETM+           
Sbjct: 374 ----IQEKTAAVLLIGSAAETFSKRLETVGYGNFEIVETMEKAIPRAAQLAK 421


>gi|331268329|ref|YP_004394821.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
 gi|329124879|gb|AEB74824.1| UDP-N-acetylmuramate--alanine ligase [Clostridium botulinum
           BKT015925]
          Length = 458

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 125/346 (36%), Gaps = 29/346 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  ML+    S       +   N  +           + D+ + E    
Sbjct: 114 IAISGTHGKTTTTSMLSHITLSANLDPTILVGGNLDVINGNVRVG---NSDYFVTEACEY 170

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
               ++F      P+I +I  I   HL  +  I +I +   +  + + K G + +N DD 
Sbjct: 171 KASFLKFY-----PYIGIILNIEADHLDFYKDINDIQNTFLKFAKLIPKDGFLIVNADDE 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +        + +FG +                ++   +   K   +  +  G 
Sbjct: 226 RCLAVSKEV----DCNVMTFGINNGEVRAKNIEFNNGRPTFDVYRNDTKLFSLTLNVPGN 281

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   + L ++     L  D D+ I+ LS F+    R +       +     + + Y  +P
Sbjct: 282 HNILDSLASISASLSLNVDTDSIIEGLSTFYGAHRRFE----IKGELNGITVVDDYAHHP 337

Query: 351 ASMKAAISVLSQIS---------PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
             +KAA++               PH   R I++  D  +    + +  +      +    
Sbjct: 338 TEIKAALNAAKNFPHNRIICIFQPHTYSRTISLFDDFADSFFNADTLILADI-YAAREKD 396

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           + +  S      +++   + ++     + + +  F++  L +GD++
Sbjct: 397 TGIVSSDMLGNKIRE---KGVNCKNLHSFEAITEFLRQELKEGDLL 439


>gi|307265320|ref|ZP_07546877.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919604|gb|EFN49821.1| FolC bifunctional protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 427

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-------NSCGFYRLI 461
              L + + +   V   E ++    +      + D+V+   S        S    ++I
Sbjct: 369 ASELAERIEKEK-VIAIENIEEAVKYALDIAKEEDMVLFCGSLYMIGYVRSM-LKKVI 424


>gi|222474750|ref|YP_002563165.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
 gi|222418886|gb|ACM48909.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Florida]
          Length = 482

 Score = 42.5 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 83/359 (23%), Gaps = 47/359 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              I ++GS GKT+T  M+   +                              ++ + E 
Sbjct: 118 GRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFH---YGNNYKMGAGEWAVVEG 174

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G            IAV+T +   H   +S +E +    ++    ++  G   +  
Sbjct: 175 DESDAGFTELPC-----EIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASVMPS 229

Query: 228 DDSFFELLKAKSHA---------LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             SF     AK            L        G +   D      ++      + V  + 
Sbjct: 230 RLSFTLGNGAKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRLPVPGRH 289

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +               +         V    + ++                    
Sbjct: 290 NVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIANVGGVTFVDDYAHHPTEIEA 349

Query: 339 FTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSF 388
                +    +        P             +         +L D+   GE   S   
Sbjct: 350 SRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGEEVISGCE 409

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +D+   +       V                     ++ T D +   + S    GDVV
Sbjct: 410 SLDIVREIKSRGFDQVV--------------------HASTPDAITDIVASVAQPGDVV 448


>gi|271964376|ref|YP_003338572.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
 gi|270507551|gb|ACZ85829.1| UDP-N-acetylmuramate--alanine ligase [Streptosporangium roseum DSM
           43021]
          Length = 468

 Score = 42.5 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 75/395 (18%), Positives = 137/395 (34%), Gaps = 39/395 (9%)

Query: 68  VVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           VVV+T +  S   L   +     V     A   LA     R+    +A+ G+ GKTTT  
Sbjct: 78  VVVSTAIRDSNPELGEALRQGLRVI-PRAA--ALASVMAGRTG---VALAGTHGKTTTTS 131

Query: 125 MLT-IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           MLT            C+G      G+           D G  E+ ++   E      ++ 
Sbjct: 132 MLTVALQKCGADPSYCVGGQLVTTGL---------GADEGAGEVFVAEADESDGSFLMLA 182

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P IAV+T + P HL N+   +  A   +          ++ +  DD     L   + A G
Sbjct: 183 PEIAVVTNVEPDHLDNYG--DPRAVYDSFARFVERVGKSMVICADDPGSAALVPIARARG 240

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           +  + ++G+++ ADF++             V+ +G   EV     G H A N    + + 
Sbjct: 241 L-KVVTYGEAEGADFRVSGILPDGLGISFAVEGRG---EVRLAVPGRHNALNATAVIAVA 296

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L    D     L+ F   + R +    A        + +SY  +P  + A +     +
Sbjct: 297 MELGVSFDEIRDGLAAFTGAKRRFEAKGEAGG----VAVFDSYAHHPTELAADLRAARDV 352

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLA---EVLSLYNISHVWLS------GFHVLAL 414
                G    +      +   ++ F  +      +     +  V+ +      G     +
Sbjct: 353 VASFSGSGRVIAVFQPHLYSRTRFFADEFGVALGLADEAIVLDVYGAREDPEPGVSGALV 412

Query: 415 KDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              +P     V Y+   + +   +      GD+V+
Sbjct: 413 AGKVPLPPERVTYAPQREAVPALVAGRARPGDIVL 447


>gi|167836218|ref|ZP_02463101.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           thailandensis MSMB43]
          Length = 220

 Score = 42.5 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+  ++  V         L   A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----ESVLH-QLEEVLAGRSVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 194


>gi|282897750|ref|ZP_06305749.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
 gi|281197429|gb|EFA72326.1| UDP-N-acetylmuramate--alanine ligase [Raphidiopsis brookii D9]
          Length = 489

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 61/393 (15%), Positives = 120/393 (30%), Gaps = 44/393 (11%)

Query: 68  VVVNTDM------VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VV +T +        +   L  P+    DVL AL  +A           IA+ G+ GKTT
Sbjct: 99  VVCSTAINNNNLEYKAALELGCPILHRSDVLAAL--IADYH-------SIAVAGTHGKTT 149

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L         +     +            +  + + E   S           
Sbjct: 150 TSSMIGYMLLQAGLDPTIVVGGEVN---AWEGNARLGESKYLVAEADES-----DGSLVK 201

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P I +IT I   H  +++ +E++         G +                       
Sbjct: 202 HTPAIGIITNIELDHPDHYATLEQVVETFQTFARGCQVVVGSIDCDIV---------RDR 252

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTL 300
           L     YS    + AD+ +      ++ +   V  +GKS   +    +G H   N L  +
Sbjct: 253 LKPGISYSLDPDQGADYTVTNIDYRADGTTALVWEKGKSLGVLSLQLLGRHNLSNALAAV 312

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
            +  +L  +     K L+ F     R +               + Y  +P+ ++A ++  
Sbjct: 313 AVGRVLNLEFGEIAKGLATFEGARRRFEFRGEVDG----ITFIDDYAHHPSEIRATLAAA 368

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV-------LA 413
              +  G+                      +      L  ++ ++ +G            
Sbjct: 369 RLQAKAGQRVVGIFQPHRYSRVRTFFDEFANCFTHADLVVLTDIYSAGEPSCEQITGEKL 428

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
             +   +   V Y  ++  +   + S+L  GD+
Sbjct: 429 AAEIAKQHPQVIYQPSLALIPRVLLSTLRPGDL 461


>gi|255326226|ref|ZP_05367312.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296680|gb|EET76011.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Rothia
           mucilaginosa ATCC 25296]
          Length = 528

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 110/375 (29%), Gaps = 45/375 (12%)

Query: 97  KLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +LA     RS       + +TG+ GKTTT  M+   L +  K          ++G+P+  
Sbjct: 144 ELAWRLNERSGLPTPKWLCLTGTNGKTTTVGMVDSVLKAAGK----KSIQVGNVGMPIVY 199

Query: 154 ARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A    +  +F   EL    L         + P+ +V+  IA  H+      E   + KA 
Sbjct: 200 AIADDEPYEFFAVELSSFQLHWTH----SMSPYASVVLNIAEDHVDWHGSFERYKADKAR 255

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           ++E  +       ++ D+   +  A          +S  +               +++++
Sbjct: 256 VYEHTQVACIFNTDHVDTLRMVENADVIEGARAIGFSSTEMPAVSMLGLAEDIMVDRAFL 315

Query: 273 EVQLQGKSMEVVHH-----GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           + +        V                +   L   ++  A         +     +   
Sbjct: 316 KNRYNEAYELAVLEDLAPAPGKMPAKHTVENALAAAALCRAADIDPKAVGAGLRSFKTGA 375

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R +          +++S   NP +  A++S    +     G    V             
Sbjct: 376 HRNQLVGYANDIMWVNDSKATNPHAANASMSGYPSLVWIAGGLSKGV------------- 422

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS-------- 439
            + +L  V     +  V + G    ALK AL        +  M                 
Sbjct: 423 EYDELI-VAHAQRLKAVLIIGTDTAALKSALANHAPQVPTYNMTAAVADSSDGVAVMNAA 481

Query: 440 ------SLVDGDVVV 448
                     GD V+
Sbjct: 482 VAKAAELAHPGDTVL 496


>gi|302874833|ref|YP_003843466.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
 gi|307690547|ref|ZP_07632993.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
 gi|302577690|gb|ADL51702.1| FolC bifunctional protein [Clostridium cellulovorans 743B]
          Length = 430

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 9/84 (10%), Positives = 26/84 (30%), Gaps = 12/84 (14%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS---------GFHVLALKDALPRSIHVHYSETMD 431
           +G L+     ++  V++  +   +            G  +L +   +  +    Y E   
Sbjct: 341 LGILADKQVDNMVNVIAK-DAKKIITVTPNSERAELGEDLLKIVKKVNDNCQ--YEENYQ 397

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSC 455
                 +      D++++  S   
Sbjct: 398 EALRKAREYAEAEDIILISGSLYM 421


>gi|1841788|gb|AAB47522.1| UDP-N-acetylmuramate-alanine ligase [Synechococcus elongatus PCC
           7942]
          Length = 280

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 11/76 (14%)

Query: 401 ISHVWLSGF------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
           IS ++ +G           L DA+ +   +VHY+  ++ +   +   L  GD+ +     
Sbjct: 201 ISDIYAAGERNPGQLSGQTLADAIAQYQANVHYAPDLEAVEQRLHQLLQPGDLALF---L 257

Query: 454 SCG-FYRLINLLLEEF 468
             G   ++I  LL+ +
Sbjct: 258 GAGNLNQVIPRLLDHY 273


>gi|238026130|ref|YP_002910361.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           glumae BGR1]
 gi|237875324|gb|ACR27657.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           glumae BGR1]
          Length = 503

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  ++ +    V L G     ++ AL    + +    T++         
Sbjct: 401 GDGKGQDFSPLAAPVARW-CRAVMLIGRDAPRIRAALADSGVPLVEHATLEAAVRAASEL 459

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 460 AEPGDAVLL 468


>gi|171060647|ref|YP_001792996.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
 gi|170778092|gb|ACB36231.1| UDP-N-acetylmuramate [Leptothrix cholodnii SP-6]
          Length = 480

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/296 (10%), Positives = 76/296 (25%), Gaps = 34/296 (11%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             RP  A++  +   H   F+ +  I +    +   +   G + +N  +     +  +  
Sbjct: 203 HYRPRTAILNNLEYDHADIFADLAAIETQFHHLVRTVPAKGRLVVNQREDSLRRVLERGC 262

Query: 241 ALGIKTI----------YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +              S G+    D      K    +  +  +    +         +
Sbjct: 263 WSEVHYFGARKETPGALRSRGEPHAFDVLRGSLKVARVEWGLLGEHNQLNALAAIAAAEH 322

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                      +           ++  +           +              + +   
Sbjct: 323 VGVSPADAGAALGRFENVRRRLELRGEASGVKVYDDFAHHPT------------AIHTTV 370

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
             ++  + V   ++          LG M             L   L   ++S     G  
Sbjct: 371 NGLRRKVGVARILAVFEPRSNTMKLGTMA----------SQLPWALEEADLSFCHSGGLG 420

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             A    +P        ++++ L   +  +   GD ++   SN  GF  +   LLE
Sbjct: 421 WDAAAALVPLGEQAQVHDSIERLVAAVVRAARPGDHIL-CMSNG-GFGGVHAKLLE 474


>gi|254458836|ref|ZP_05072260.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
 gi|207084602|gb|EDZ61890.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacterales bacterium GD 1]
          Length = 431

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 59/459 (12%), Positives = 129/459 (28%), Gaps = 86/459 (18%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +P      +S +S       AF  +   +     ++  A   GA               
Sbjct: 4   ELPNQEYKYVSENSSECGADTAFV-LSAQNK---KYLQDAKDNGA--------------- 44

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               +  + D+               K  I+ ITG+ GKTTT   +   L  +    A  
Sbjct: 45  --HSIINIKDIAELFGI--------DKIKIVGITGTNGKTTTASAIYSFLLDLGYKTAMQ 94

Query: 141 GSY-----------------NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
           G+                  +           +    +F I E+  S     +     ++
Sbjct: 95  GTRGFFMNDEVIEGKSLTTPSVLNTYKHIYQAVESGCEFFIMEV--SSHAIAQERIEGLK 152

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
             + ++T I   HL     I E  + K             F   +            A  
Sbjct: 153 FELKILTNITQDHLDYHKTIGEYIAVKNS-----------FFQDEGKKLINKDEPRSAFN 201

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
           IK  +++G    A ++L  +   +  S +    +            +++   M     + 
Sbjct: 202 IKNTFTYGIENPASYKLMAYSLNNASSGIIQHFKEVVPFTSSLHGFFNLYNLMAAIGAVD 261

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            ++   ++  ++ +  F    GR ++     N     ++D ++  +         +   +
Sbjct: 262 LLVDEKLEKIVEVVDNFAGVSGRMEQVCELPN----VIVDFAHTPDG--------MQQVL 309

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------AL 414
           +   E   + V G     G         L   ++      V+++  +            +
Sbjct: 310 NALKEKELLVVFGA----GGDRDKQKRPLMGRVAASLAKKVYITSDNPRNEDPQAIVDDI 365

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
            + +     V                  +G+VVV+  K 
Sbjct: 366 LEGIEDRSIVSVELNRKKAIEMALDDQGEGEVVVILGKG 404


>gi|326561546|gb|EGE11889.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis 7169]
          Length = 486

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 126/408 (30%), Gaps = 50/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIP---VFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
           A +VVV++ +      +         V  V  A  L +L            IA+ G+ GK
Sbjct: 83  ADVVVVSSAIDRQNPEIQAALKAHIPV--VRRADMLGELMRYRHG------IAVAGAHGK 134

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  +LT+ L+        +     +               + + E   S         
Sbjct: 135 TTTTSLLTMMLTEAGLDPTYVIGGKLN---ASGKNAALGASRYLVAEADES-----DASF 186

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +RP   V+T I   H+  +    +++  A  +    +   G   L  DD     +   
Sbjct: 187 LSLRPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAVLCGDDKELYAMIDD 246

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                I    ++G  K+ D Q         ++   V  + K    +  +  G H   N L
Sbjct: 247 IARPVI----TYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVYNAL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKA 355
             + + +          +A+  F     R +        +     ++ + Y  +P  +  
Sbjct: 303 GAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLIDDYGHHPTEIAM 362

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQS-----FHIDLAEVLSLYNISHVWLSGFH 410
            I    Q  P         L  M +    S++       +++   +    +  V+ +G  
Sbjct: 363 TIKAARQSYPDRR------LVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLDVYSAGEE 416

Query: 411 ------VLALKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVV 448
                    L  +L     V          + +   ++ +L   D+++
Sbjct: 417 LIKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLM 464


>gi|167399293|ref|ZP_02304817.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167051797|gb|EDR63205.1| FolC bifunctional protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 85/287 (29%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 136 GLGGRLDATNIVDSDVAAITSIALDHTDWLGYDRESIGREKA---GVFRGGKPAVVGEPD 192

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   +  LG +        K +  +    ++  +Q       Q    ++    +  
Sbjct: 193 MPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN 252

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N    L ++      +       ++    +      R  +      LI +  +   
Sbjct: 253 VPLANAATALAVLHYSELPLSD----EAIRQGLQAASLPGRFQVVSEQPLLILDVAHNPH 308

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +   I+P    ++  V   +  + +       D+A  L+     +   + + 
Sbjct: 309 AARYLVNRLAQVINPVNASKQGKVRAVVGMLSD------KDIAGTLACLSERVDEWYCAP 362

Query: 408 --GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G    +        +       ++  +          DVV+V  S
Sbjct: 363 LEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGS 409


>gi|30250149|ref|NP_842219.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino
           pimelate ligase transmembrane protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30139256|emb|CAD86129.1| mpl; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase transmembrane protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 454

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 123/384 (32%), Gaps = 39/384 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLA 154
             LA          ++A+ G+ GKTTT  ML   L     +    IG    + G+   L 
Sbjct: 93  QWLAQHLL--HNRWVLAVAGTHGKTTTSSMLAWILEYAGLSPGFLIGGVPENFGLSARLG 150

Query: 155 RMPVD---VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
            +  +     F + E                  +P   V+  +   H   F  +  I   
Sbjct: 151 IIEAEQTPSPFFVIEADEYDTAFFDKRSKFVHYQPRTVVLNNLEYDHADIFPDLAAIERQ 210

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
              +   + + G + +N  D+  + +  +     ++        +    Q        + 
Sbjct: 211 FHHLIRIVPRNGLLVVNGQDTALQRVLNQGCWTPVEQFDVDDGWQITMEQNESLSVRFQG 270

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +       E         +A      +             I+ALS F   + R + 
Sbjct: 271 VSQGILHWELLGEHNCMNALAALAAARHAGVPAQL--------GIEALSRFKNVKRRME- 321

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQ 386
                       + + +  +P +++  ++ L   +  G+ R IAVL    +  ++G    
Sbjct: 322 ---LRGVINDIHVYDDFAHHPTAIRTTLAGLR--AKIGQARIIAVLEPRSNTMKLGVWQN 376

Query: 387 SFHIDLAEVLSLYNISHVWL----SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV 442
                     SL     ++      G+++ +   +L     +H+   +  +   I ++  
Sbjct: 377 DL------AASLDQADQIFCYAHQIGWNIDSALASLDDKTEIHH--DLTTMISAIAATAH 428

Query: 443 DGDVVVVKSSNSCGFYRLINLLLE 466
            GD +++  SN   F  L + LL+
Sbjct: 429 PGDHILI-MSNGS-FSGLHDKLLD 450


>gi|289577961|ref|YP_003476588.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
 gi|289527674|gb|ADD02026.1| FolC bifunctional protein [Thermoanaerobacter italicus Ab9]
          Length = 427

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 13/73 (17%)

Query: 401 ISHVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS--- 452
              +  +         A           V   E ++    +      + D+V+   S   
Sbjct: 353 ADIIITTTPLSERAYKASELAERIEKEKVIAIENIEKAVKYALDIAKEEDMVLFCGSLYM 412

Query: 453 ----NSCGFYRLI 461
                S    ++I
Sbjct: 413 IGYVRSM-LKKVI 424


>gi|217034349|ref|ZP_03439765.1| hypothetical protein HP9810_491g42 [Helicobacter pylori 98-10]
 gi|216943234|gb|EEC22701.1| hypothetical protein HP9810_491g42 [Helicobacter pylori 98-10]
          Length = 335

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGI--SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
            ++ ++   G         + N I  S+D   +     F A      D H  I  A++ G
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLD--KVQKGSLFVA-----KD-HTLIPKALELG 56

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
           A  ++        +    +    + D+  +LN L   
Sbjct: 57  AYGILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|83718666|ref|YP_443289.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|167621275|ref|ZP_02389906.1| FtsJ-like methyltransferase [Burkholderia thailandensis Bt4]
 gi|257139525|ref|ZP_05587787.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
 gi|123536418|sp|Q2SUW0|RLME_BURTA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|83652491|gb|ABC36554.1| FtsJ-like methyltransferase [Burkholderia thailandensis E264]
          Length = 220

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+  ++  V         L   A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----ETVLH-QLEEVLAGRSVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 194


>gi|53718994|ref|YP_107980.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|53725546|ref|YP_102539.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124383467|ref|YP_001026576.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126438553|ref|YP_001058524.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126450179|ref|YP_001080139.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|126453006|ref|YP_001065784.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|167719064|ref|ZP_02402300.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei DM98]
 gi|167738062|ref|ZP_02410836.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 14]
 gi|167815246|ref|ZP_02446926.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 91]
 gi|167845199|ref|ZP_02470707.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei B7210]
 gi|167893751|ref|ZP_02481153.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 7894]
 gi|167902199|ref|ZP_02489404.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910441|ref|ZP_02497532.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 112]
 gi|167918467|ref|ZP_02505558.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei BCC215]
 gi|254178317|ref|ZP_04884972.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|254180203|ref|ZP_04886802.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254188378|ref|ZP_04894889.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254198319|ref|ZP_04904741.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|254205763|ref|ZP_04912115.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|254261558|ref|ZP_04952612.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
 gi|254358836|ref|ZP_04975109.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|81379953|sp|Q63V86|RLME_BURPS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81605295|sp|Q62L80|RLME_BURMA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459671|sp|Q3JTT5|RLME_BURP1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|158513524|sp|A3NTW3|RLME_BURP0 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040695|sp|A3N853|RLME_BURP6 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189040700|sp|A1V319|RLME_BURMS RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044089|sp|A3MIQ3|RLME_BURM7 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|189044090|sp|A2S3Q7|RLME_BURM9 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|52209408|emb|CAH35353.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia pseudomallei K96243]
 gi|52428969|gb|AAU49562.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 23344]
 gi|124291487|gb|ABN00756.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10229]
 gi|126218046|gb|ABN81552.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 668]
 gi|126226648|gb|ABN90188.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1106a]
 gi|126243049|gb|ABO06142.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei NCTC 10247]
 gi|147753206|gb|EDK60271.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei JHU]
 gi|148027963|gb|EDK85984.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei 2002721280]
 gi|157936057|gb|EDO91727.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699356|gb|EDP89326.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           mallei ATCC 10399]
 gi|169655060|gb|EDS87753.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei S13]
 gi|184210743|gb|EDU07786.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1655]
 gi|254220247|gb|EET09631.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           pseudomallei 1710a]
          Length = 220

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E        H  L EVL+   +  V         L   A
Sbjct: 90  ALDMLPMEPVADVHFIQGDFRE----ESVLH-QLEEVLAGRAVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 194


>gi|254479394|ref|ZP_05092727.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
 gi|214034663|gb|EEB75404.1| cyanophycin synthetase [Carboxydibrachium pacificum DSM 12653]
          Length = 857

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 78/502 (15%), Positives = 161/502 (32%), Gaps = 78/502 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISID-SRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
            T  D+ +  +   +         GI+ID +  I P     A++            A+  
Sbjct: 343 LTLDDVPRKGRKVFLRESANLSTGGIAIDRTDEIHPHNIEIAVR---------AAKAIGL 393

Query: 64  GAGLV-VVNTDMVASIGSLSIPVFGVD-----------------DVLGALNKLAVAARLR 105
               + +   D+   + + +  +  ++                 +V  A+  +      +
Sbjct: 394 DIAGIDITMEDIRKPLSATNGAIIEINASPGIRMHHYPSKGKPRNVAKAIVDMLFPKGSK 453

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTL 153
           +   I++ITG+ GKTT   M+   L +                  CI   +N        
Sbjct: 454 ATIPIVSITGTNGKTTVTRMVAHILKTYGYTVGMTTTDGIYIDDKCIYKGDNTGPKSART 513

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKA 211
                ++D  + E      G +R         + VIT I+  H  +   + +E++A  KA
Sbjct: 514 CLADKNIDAAVLETA--RGGILREGLGYDLADVGVITNISEDHLGIDGINTLEDLAFVKA 571

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAK--------SHALGIKTIYSFGKSKNADFQLRKW 263
            + E ++  G   LN DD     L  K        S      T+    ++      +++ 
Sbjct: 572 LVVEAVKDDGYSVLNADDPMTPYLAKKAKGKIIYFSMYDNNLTVKRHIENGGIAVYVKEG 631

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   +   ++ + +     G   H  +N L  +     +   ++   K +  F+P 
Sbjct: 632 VIVIANGQIVPVVRIEEIPATLGGKVLHNIENSLAAIAASYGVKVPINIIAKGIKTFYPD 691

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                      N G F ++ + Y  N   +K  I    ++  +       ++G +   G+
Sbjct: 692 TTHNPGRFNLFNIGSFRVLVD-YGHNVEGIKKVIEAARKLDANR------LIGVIGVPGD 744

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDAL------PRSIHVHYS 427
              S    + EV        +++           G     L++         ++I +   
Sbjct: 745 RMDSSIFKVGEVCGK-GFDFIYIKEDEDLRGRKQGEVAKILEEGAIKGGMDKKNIKIILK 803

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           ET          S   GD++VV
Sbjct: 804 ET--EALKAAMHSAEAGDLIVV 823


>gi|218296768|ref|ZP_03497474.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermus aquaticus
           Y51MC23]
 gi|218242857|gb|EED09391.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Thermus aquaticus
           Y51MC23]
          Length = 418

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 10/147 (6%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A  A   S   II ITG+ GKT+T       L          G+      V   L  +  
Sbjct: 85  AELAYRLSPTPIIGITGTAGKTSTTLFTAHLLRGQGLRALEGGN------VDPPLVSVVD 138

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + +  + EL    L  I       RP +AV+  +   HL     +E   +AK  + + L 
Sbjct: 139 EAEVAVAELSSFQLERIHR----FRPRVAVLLNLGVDHLDRHGSLEAYHAAKLNLLKNLT 194

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIK 245
               +  N  D       +++ A    
Sbjct: 195 PEDALVYNEADPKVREAASRTPARPYP 221


>gi|206602502|gb|EDZ38983.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 350

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 27/112 (24%)

Query: 7   FHDLLQAIQGHSIGIVP--QGFVNGISIDSR---SIAPQEA-FFA---IKGPHYDGHDFI 57
             ++   + GH  G        + G+    R      PQ+  F A    +G        +
Sbjct: 3   LSEIASLVGGHLTGPESAFDKQILGV----RSMLEAGPQDLTFLANPKYRGE-------L 51

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
              +Q GA L      +      LSIP   V D   AL ++           
Sbjct: 52  SK-IQAGAIL------LSEPSPGLSIPQIVVPDPYLALARVMQVFYPLPSPR 96


>gi|330874999|gb|EGH09148.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 196

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           + PH +GR + + G     G         L   +       VW++  +            
Sbjct: 69  LRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDD 124

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     +  V + E        + +S    DVVV+  K 
Sbjct: 125 IRPGFAAADKVRFIEGRGQAIAELIASANADDVVVLAGKG 164


>gi|218248504|ref|YP_002373875.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8801]
 gi|257061569|ref|YP_003139457.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 8802]
 gi|226711906|sp|B7K318|MURD_CYAP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218168982|gb|ACK67719.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8801]
 gi|256591735|gb|ACV02622.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           8802]
          Length = 456

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 69/388 (17%), Positives = 123/388 (31%), Gaps = 42/388 (10%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLA 154
            +L +A R    +  + ITG+ GKTTT  ++     +      +C         + L+  
Sbjct: 94  GELELAWRSLQSSPWVGITGTNGKTTTTALVAAIFQASGLNAPSCGNIGYAACELALSQT 153

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +        I     S+  E         P I + TT  P HLS    ++   + KA + 
Sbjct: 154 KTKASSFDWIIAEVSSYQIESSRELA---PKIGIWTTFTPDHLSRHKTLDNYYAIKASLL 210

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
              E       N DD +   +     A    T     +    D          + +W+  
Sbjct: 211 RRCE---LQIFNGDDPYLHQVGLHQWADAYWTTVKGKEHLLCDAAKG---VYLQDNWIVA 264

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +  +   +   +G H  QN+LM +G   +   +     +A++ F        R     
Sbjct: 265 FGELIAPLNLFKMVGVHNQQNLLMAVGAARLAGIEKGAIAQAIATFKGV---PHRLELIT 321

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           N      I++S   N  + +  +  ++          I + G   + G+          E
Sbjct: 322 NIDGIDFINDSKATNYDAAEVGLVSVNA-------SVILIAGGEAKEGDD-----RRWIE 369

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD--VVVV- 449
            +    ++ V L G    A    L +S +      ETMD                VV++ 
Sbjct: 370 QI-KAKVATVLLIGEAATAFAQRLQQSNYEAYEIVETMDNAVKRGLELAKKQQAKVVLLS 428

Query: 450 --KSS---------NSCGFYRLINLLLE 466
              +S             F +L   L E
Sbjct: 429 PACASFDQYQSFEHRGDHFRQLCQALKE 456


>gi|162449933|ref|YP_001612300.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
 gi|161160515|emb|CAN91820.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sorangium
           cellulosum 'So ce 56']
          Length = 456

 Score = 42.2 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 127/427 (29%), Gaps = 57/427 (13%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKATI 110
           GHD    A+  GA LVVV+  + +     ++           + +L  A        A +
Sbjct: 61  GHD---PALFDGADLVVVSPGVPSFPALDAVA----RSGREVIGELELASRF---VSAPV 110

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GK+TT  +    L               + G PL    +    D  + E+   
Sbjct: 111 VLVGGTNGKSTTTALTGAMLERAGLRTFVG----GNFGTPLAEV-VDQTWDVLVLEISSF 165

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                      +      +  I   HL  ++     A AK   FE +             
Sbjct: 166 Q----AERVPTLHARAHALLNITDDHLDRYASFAAYADAKGNPFERMTPDDV----AVVP 217

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
           F + L A+  A G   + +F          R  +     +   +  +          +  
Sbjct: 218 FGDELVARQAARGRARVVTFS--------ARDARADVSAAGGAIVDRVTGARYPLDRVRL 269

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A N+       ++  A    A          EG   R     +       D+S   N 
Sbjct: 270 AGAHNLANACASAALAAALGAPAAAIGDALSSFEGLAHRTALVADVDGVRYYDDSKGTNV 329

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
            +       ++ +S   E + + + G   ++G+     +  L   L       + + G  
Sbjct: 330 GA------SVAALSGLLEAKAVLIAGGRDKLGD-----YAPLVSALRERG-RALVVLGEA 377

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFY 458
              +  A    + +  + +M    L  +S    GD V++    SS             F 
Sbjct: 378 ADRIAAAAAGVLPIARAGSMAEAVLAARSLARPGDAVLLSPACSSFDMFRDYKDRGDAFV 437

Query: 459 RLINLLL 465
           R +  L 
Sbjct: 438 RAVRELQ 444


>gi|322617111|gb|EFY14017.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322617584|gb|EFY14483.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322624787|gb|EFY21616.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322630337|gb|EFY27107.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322634517|gb|EFY31250.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322639228|gb|EFY35920.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322640091|gb|EFY36758.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322645690|gb|EFY42214.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322652054|gb|EFY48417.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322656226|gb|EFY52523.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322659378|gb|EFY55625.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665838|gb|EFY62021.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669924|gb|EFY66065.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673909|gb|EFY70006.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322678668|gb|EFY74724.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322683538|gb|EFY79552.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687613|gb|EFY83583.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193553|gb|EFZ78758.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198460|gb|EFZ83562.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323204572|gb|EFZ89575.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
 gi|323208490|gb|EFZ93429.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323213628|gb|EFZ98417.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323218337|gb|EGA03047.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323220109|gb|EGA04575.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323224517|gb|EGA08799.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323232332|gb|EGA16435.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323235635|gb|EGA19719.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323241206|gb|EGA25242.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323244948|gb|EGA28950.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323250067|gb|EGA33961.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2009159199]
 gi|323253851|gb|EGA37676.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008282]
 gi|323254988|gb|EGA38779.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008283]
 gi|323259826|gb|EGA43458.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323264154|gb|EGA47661.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008285]
 gi|323270852|gb|EGA54290.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008287]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|291276864|ref|YP_003516636.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
 gi|290964058|emb|CBG39898.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase
           [Helicobacter mustelae 12198]
          Length = 434

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 43/374 (11%), Positives = 97/374 (25%), Gaps = 60/374 (16%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR---------- 155
             A II ITG+ GKTTT  ++   L    K  A +G+     G      +          
Sbjct: 64  FPAQIIGITGTNGKTTTANLIYHVLLKNGKKCAMLGTQGLFFGGKQIKPKGLTTPGILEL 123

Query: 156 -------MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                    +  +  + E+  SH          +     ++T I   HL     +    +
Sbjct: 124 YEDLALLHELGCEVLVMEV-SSHAISQDR-IFGLDFAAKILTNITSDHLDYHKTLASYIA 181

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            K                        +  K       +  +       +    + K   +
Sbjct: 182 TKNAFLS--------------DGGLKIINKDEENANFSPKNTKSYGVKNPCDLQAKNFDK 227

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                     + M  +     +++   M   L +  +   +++  + +L  F    GR +
Sbjct: 228 NHATLQYQGREYMLKMPLYGLHNLYNIMACVLCVRELFGLEMEQILSSLQDFGGVSGRME 287

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                + Q    ++D ++  +             +          V G     G      
Sbjct: 288 ----VVCQNPMVIVDFAHTHDGIE--------KILQGFLGQSLSVVFGA----GGDRDRS 331

Query: 389 HIDLAEVLSLYNISHVWLSGFH---------VLALKDALPRSIHVHYSETMDGLFLFIQS 439
              L   +       ++++  +         +  + + +     V               
Sbjct: 332 KRPLMGGVVRKYAKKIYVTSDNPRSEDPMSIIRDILEGIEDREGVVVLPDRYEAIKKALD 391

Query: 440 SLVDGDVVVV--KS 451
               G+++ V  K 
Sbjct: 392 HQEPGEILFVLGKG 405


>gi|168817897|ref|ZP_02829897.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205345122|gb|EDZ31886.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086800|emb|CBY96572.1| dihydrofolate:folylpolyglutamate synthetase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|200387300|ref|ZP_03213912.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604398|gb|EDZ02943.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|168465923|ref|ZP_02699793.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195631249|gb|EDX49809.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|194445868|ref|YP_002041629.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194404531|gb|ACF64753.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|161502490|ref|YP_001569602.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863837|gb|ABX20460.1| hypothetical protein SARI_00534 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|111018278|ref|YP_701250.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
 gi|110817808|gb|ABG93092.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Rhodococcus jostii RHA1]
          Length = 502

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 86/310 (27%), Gaps = 27/310 (8%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
              +   G   + +S  G            + V T +A  HL     ++   +AKA +FE
Sbjct: 179 AFAEHRIGAVAMEVSSHGLALHRIDGTSFRVGVFTNLARDHLDFHPDMDAYFAAKARLFE 238

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
              +     +  DD F   L A    + +  +    ++  ADF           +   + 
Sbjct: 239 -PGRCAAAAVGVDDEFGRRLAA---TVTVPRVTFSSRTTAADFHASAVHADEGGTSFTLH 294

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
             G    V            +   L  ++ +         A++     +    R      
Sbjct: 295 GAGARKPVRLR---LLGVHQVDNALAAIAAIAVRGVDLDSAVAGIESPDTVPGRLEAVDA 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
              F    +  +           +   +     GR IAV+G     GE      + L   
Sbjct: 352 GQPFLAFVDYMHNPAG----QRRLFPYLRSLTRGRVIAVVGA---TGERDPGKRVPLGAT 404

Query: 396 LSLYNISHVWLSGF-----HVLALKDALPRSIH------VHYSETMDGLFLFIQSSLVDG 444
            + +    V ++           L++ + R         V          +   +    G
Sbjct: 405 AARFA-DTVIVTDESPCSDDAQRLREDVARGARSGGDAEVLVVPDRAEAIVAAVTLAAPG 463

Query: 445 DVVVVKSSNS 454
           DVVVV     
Sbjct: 464 DVVVVAG-RG 472


>gi|315125883|ref|YP_004067886.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
 gi|315014397|gb|ADT67735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase (murein peptide ligase)
           [Pseudoalteromonas sp. SM9913]
          Length = 451

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 130/374 (34%), Gaps = 39/374 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIF 165
           K+ ++A+ G+ GKTTT  ML   L          IG    + G+   + +      F + 
Sbjct: 102 KSWVLAVAGTHGKTTTASMLAWILEYAGLKPGFLIGGIVQNFGLSARVGQ----TPFFVI 157

Query: 166 ELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           E            +  +   P   ++  +   H   F  +  I      +   L ++G +
Sbjct: 158 EADEYDTAFFDKRSKFIHYLPRTLILNNLEFDHADIFEDLNAIKKQFHHLIRTLPQSGKV 217

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
               DD     + AK      +T+         D    +  +     +  +        V
Sbjct: 218 LWPKDDEALSDVIAKGLWSESETLG--------DDWDYQLLKADGSQFNVLLNTQLQGVV 269

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
               IG H  +N +M +     +   ++ +I AL  F   + R +      N   +    
Sbjct: 270 NWQAIGEHNVKNAMMAIAAARHVGIAIEHSIAALGEFISPKRRMELKADINNIKVY---- 325

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYN 400
           + +  +P +++  ++ L   +  G  + IA+L    +  +MG    +    L       +
Sbjct: 326 DDFAHHPTAIQTTLAGLR--AKVGNDKIIAILEPRSNTMKMGVHQFTLLDSL------RD 377

Query: 401 ISHVWLSGFHVLA--LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY 458
              V L     L+  LK+   ++  +   ++   +   +  S+     V++  SN  GF 
Sbjct: 378 ADEVLLFEPENLSWSLKEQAEKAG-MQCFDSTIAIIETVLESIEPNQHVLI-MSNG-GFN 434

Query: 459 ----RLINLLLEEF 468
               + ++ L  ++
Sbjct: 435 GLHQQFVDGLANKY 448


>gi|168182555|ref|ZP_02617219.1| putative D-proline reductase, PrdA proprotein [Clostridium
           botulinum Bf]
 gi|237795916|ref|YP_002863468.1| D-proline reductase, PrdA proprotein [Clostridium botulinum Ba4
           str. 657]
 gi|182674120|gb|EDT86081.1| putative D-proline reductase, PrdA proprotein [Clostridium
           botulinum Bf]
 gi|229263478|gb|ACQ54511.1| D-proline reductase, PrdA proprotein [Clostridium botulinum Ba4
           str. 657]
          Length = 703

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 374 VLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMD 431
           +  DM + G L+   + + + EV+    +  V         + +   +         T +
Sbjct: 38  IFPDMVDSGLLTIPDNCLKVGEVIGAKLLKTVDSLTPLTSDIVEGAKKIGKEDKEDSTTE 97

Query: 432 GLF-------LFIQSSLVDGDVVVVKSS---NSCGFYRLINLLL 465
                       ++ +L  GD++  K+S   N   F +L++ LL
Sbjct: 98  EALLTEGNEKAVLKYNLKAGDII--KASDLENPMHFEKLVDSLL 139


>gi|329115578|ref|ZP_08244300.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
 gi|326695006|gb|EGE46725.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pomorum DM001]
          Length = 498

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 134/423 (31%), Gaps = 64/423 (15%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VV++T +      +      +  V  V  A   LA   RLR   
Sbjct: 80  GHK----AENLGDAQVVVISTAVKRDNPEVVAARAKLIPV--VRRA-EMLAELMRLRWS- 131

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  ++   L + K     I                    D+ + E  
Sbjct: 132 --VAVGGTHGKTTTTSLVAAVLEAAKLDPTVINGGIIE---AYGTNTRMGKGDWMVVEAD 186

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I+V+T + P HL ++   E + +A  +    +   G   L  D
Sbjct: 187 ES-----DGSFLRLPSVISVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCID 241

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSM 281
               + +  +   L    I ++G S  AD +  K              +    +   K+ 
Sbjct: 242 HPAVQQMIPR---LSDHRIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRHTRKAG 298

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  QN L  + + + +    D     L+ F   + R  R   A        
Sbjct: 299 PFRLPMLGSHNVQNALAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTGEAGG----IT 354

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A            V++ + PH   R   +  D C             
Sbjct: 355 VIDDYGHHPVEIAAVLKAARQAGANHVIAVMQPHRYSRLKILFSDFCAC----------- 403

Query: 393 AEVLSLYNISHVWLSGFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDG 444
                   +S V+ +G           L + L    H       + D L   I +    G
Sbjct: 404 MNDADTVIVSDVYAAGEDPLPDASRDKLIEGLRERGHRSVVPLSSPDHLAEMINAIAKPG 463

Query: 445 DVV 447
           D V
Sbjct: 464 DYV 466


>gi|288870137|ref|ZP_06113069.2| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
 gi|288868258|gb|EFD00557.1| UDP-N-acetylmuramate--alanine ligase [Clostridium hathewayi DSM
           13479]
          Length = 463

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 127/378 (33%), Gaps = 35/378 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L ++            +A++G+ GKTTT  M+T  L +                V   
Sbjct: 105 ELLGQMMKNY-----ENAVAVSGTHGKTTTTSMITEILLAADADPTIS--------VGGI 151

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           L  +  ++  G  EL ++   E         P I VI  +   HL  F  +++I  +   
Sbjct: 152 LNSIGGNIRVGGPELFVTEACEYTNSFLSFFPTIEVILNVEADHLDFFKDLDDIRRSFRL 211

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS--EQS 270
             E L K G + +N D + +E +           + +FGK +++ ++  + +        
Sbjct: 212 FAEKLPKDGILVINSDITDYEKITE----GLPCRVITFGKEESSKYRAEQIRFDELARPV 267

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +           V     G H   N L  + +   L   ++   K L  F     R ++ 
Sbjct: 268 FDLSVDGETVDTVALGVPGEHNVYNSLAAIAVCMELGISLEMIKKGLWKFTGTNRRFEKK 327

Query: 331 RCALNQGFFTLIDESYNANPASM-----KAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                               AS+          +     PH   R  A L +  E   ++
Sbjct: 328 GELGGITIIDDYAHHPQEISASLATALNYPHRKLWVVFQPHTYTRTKAFLDEFAEALSMA 387

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDG 444
                 LA++ +     ++   G     + D +  + +  HY  + D +  FI  + + G
Sbjct: 388 DEV--ILADIYAARETDNL---GISSKDIVDRIEAKGVKAHYIPSFDEIETFILENCIHG 442

Query: 445 DVVVVKSSNSCGFYRLIN 462
           D +++      G   ++ 
Sbjct: 443 D-LLIT----MGAGDIVK 455


>gi|167040832|ref|YP_001663817.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300914867|ref|ZP_07132183.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307723899|ref|YP_003903650.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
 gi|166855072|gb|ABY93481.1| FolC bifunctional protein [Thermoanaerobacter sp. X514]
 gi|300889802|gb|EFK84948.1| FolC bifunctional protein [Thermoanaerobacter sp. X561]
 gi|307580960|gb|ADN54359.1| FolC bifunctional protein [Thermoanaerobacter sp. X513]
          Length = 429

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS-------NSCGFYRLI 461
              L + + +   V   E ++    +      + D+V+   S        S    ++I
Sbjct: 369 ASELAERIEKEK-VIAIENIEEAVKYALDIAKEEDMVLFCGSLYMIGYVRSM-LKKVI 424


>gi|312114849|ref|YP_004012445.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219978|gb|ADP71346.1| UDP-N-acetylmuramyl-tripeptide synthetase [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 455

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 57/398 (14%), Positives = 113/398 (28%), Gaps = 33/398 (8%)

Query: 76  ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           A+   LS+P+    +   AL  LA          I A+TG+ GKT+    L    ++   
Sbjct: 34  ANAEGLSLPILRAAEPRRALALLAARFYRAQPDIIAAVTGTNGKTSVAAFLRQIWATAGH 93

Query: 136 T-------------YACIGSYNNHIGVPLTLARMPVDVDFGIF-ELGMSHLGEIRFLTHL 181
                              S+     V L  A   +  +      L  S  G  +     
Sbjct: 94  DAASLGTIGIITNAGERPLSHTTPDPVALHKALADLANEGVTHLALEASSHGLDQHRLDG 153

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           VR      T I   HL      E+  +AK  +F  L  +G   +   D         +  
Sbjct: 154 VRFSAGAFTNITRDHLDYHPTFEDYFNAKMRLFRDLLPSGAPAIIDADGDHADDVVGTAR 213

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
                + + G+   A       +    Q    +        ++     + ++  ++    
Sbjct: 214 AKKLDVMTVGERGAALCLKGVERDGFRQRLSIIYRGRLFTVLLPLAGAFQVSNALVSAGL 273

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
            + + ++         ++   K         +     F     + +A        +  L 
Sbjct: 274 ALGLGSSAGGVFEALETLRGAKGRLDYVGETSAGAPIFVDYAHTPDA-------LVKALE 326

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA------LK 415
            + P+  GR   VLG     G              +  N   V+++  +  +        
Sbjct: 327 ALRPYVTGRLHVVLG----CGGDRDRGKRPEMGRAATANADIVYVTDDNPRSEEPAAIRA 382

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
             +  +      +           +L  GD+++V  K 
Sbjct: 383 AIMAAAPGATEIDGRADAIAIAIGNLERGDLLLVAGKG 420


>gi|51894054|ref|YP_076745.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
 gi|59798212|sp|Q67K97|MURC_SYMTH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|51857743|dbj|BAD41901.1| UDP-N-acetylmuramate-alanine ligase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 482

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 123/405 (30%), Gaps = 48/405 (11%)

Query: 64  GAGLVVVNTDMVASIGSLSIPV---FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           GA +VV +T +      L+        V      L +             IA+ G+ GKT
Sbjct: 64  GADVVVYSTQVPEDNPELAAARARGLRVLHRSELLAEF-------LNGRSIAVAGTHGKT 116

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  M+   L         +   +  +   +         D+ + E   S          
Sbjct: 117 TTSSMVACLLEKAGLDPTILLGGDLEV---IGGTGKAGRGDWVVAEADES-----DRSFL 168

Query: 181 LVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL-KAK 238
              P +AV+T + P HL  +      I     +    ++  G   L  DD     + +  
Sbjct: 169 RYHPRVAVVTNVEPEHLEFWEGSFARIQEGFRQFLRQVQPGGLAALCADDPTLRSIGQEL 228

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNML 297
            +  G+  +  +G    A+++    +   +    +    G+   EV     G H A N L
Sbjct: 229 RNQPGVVHVVFYGTHPEAEWRAENIRPWEKGIVYDCVRDGRLLGEVRLPIPGRHNALNSL 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L              + L  F     R + +           + + Y  +P  ++A +
Sbjct: 289 GALVAGDYAGLSFRQMQETLLSFGNARRRFEVWADVDGIR----VVDDYAHHPTEIRATL 344

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL-SLYNISHVWLS--------- 407
           +           R +AV        +     H  + E   +  +   + L+         
Sbjct: 345 AAA---REQAGRRVVAVF-----QPQRYSRTHWLMDEFATAFQDADVLVLTRIYSPPGER 396

Query: 408 ---GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVV 447
              G    AL   +  +    V      + +  F+ + +  GD V
Sbjct: 397 PIPGVSAEALARRIQANTGRPVAVISDQEEILRFLLAEVRPGDTV 441


>gi|189183580|ref|YP_001937365.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Orientia
           tsutsugamushi str. Ikeda]
 gi|189180351|dbj|BAG40131.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Orientia
           tsutsugamushi str. Ikeda]
          Length = 472

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 103/354 (29%), Gaps = 39/354 (11%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                    I ITG+ GK+TT  ++   L+     +   G+          +  +  +V+
Sbjct: 107 YNEYPNRKYIGITGTNGKSTTSTLIHHILTLTNGKFDLGGNIGK------AVLSLRNNVE 160

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L     L   ++  IAV+  I   H+  +   ++   +K +I     K G
Sbjct: 161 GYVLELSSFQLD----LITDLKLDIAVLLNITADHIDRYYSFDQYILSKQKILSLATKNG 216

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGK 279
              ++ + S        +         +                K  +++S         
Sbjct: 217 YALISKECSIISNANYNTLYASKFRNTTCSLELIKKAINTDELNKSIADESINCQSQPTL 276

Query: 280 SMEVVHHGIG---------YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                H              H  QN+        IL  +      A++ F P   R    
Sbjct: 277 VKFSSHLPQHINFTSLLLGKHNNQNIAAAFYACKILGRNEYDITSAINQFQPLPHRM--- 333

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           +    +    + ++S   N  +   A+  LS I     G          E G  S     
Sbjct: 334 QYIGKKNNIHIYNDSKATNADAASKALLSLSNIYWIAGGVA-------KEGGVNS----- 381

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            +   L    +   +L G    AL + L   +    + TM+  F          
Sbjct: 382 -IVNTLYE--VKKAYLYGQSRYALAETLKGVVAFSINNTMEEAFNQAIIDAESD 432


>gi|33862300|ref|NP_893860.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9313]
 gi|44888177|sp|Q7V9C3|MURC_PROMM RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|33640413|emb|CAE20202.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9313]
          Length = 488

 Score = 42.2 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 68/405 (16%), Positives = 136/405 (33%), Gaps = 46/405 (11%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           LVV++T +  S   L       + +    D+L AL +             IA+ GS GKT
Sbjct: 84  LVVISTAIPKSNPELKAAKLSQLKILHRSDLLAALIQ---------AQPSIAVAGSHGKT 134

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +LT  L++  +    +                       + E   S          
Sbjct: 135 TTSTLLTTLLATTDQDPTAVIGGVVPY---YDSNGHVGKGRLLVAEADES-----DGSLV 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  + VIT +   H  +++ ++E+ +      +G  +    F         +LK    
Sbjct: 187 KFQATLGVITNLELDHTDHYANLDELINTMKRFGQGCRRLLANF------DCPILKEHFD 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
           A      +S   S   DF         +Q+  ++  QGK M ++     G H   N +  
Sbjct: 241 ATA---WWSVKTSAGVDFAALPICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +     +   + L+   P   R         +          +   A++  A  +
Sbjct: 298 IAACRLEGLSFEDVQQGLADLQPPGRRFDFRGTWEGRQIVDDYAHHPSEVSATLTMARLI 357

Query: 360 LSQISPHGEGRRIAVLGDMC-EMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVL--A 413
           ++            +L          +  F  D A  L   +   ++ V+ +G + +  A
Sbjct: 358 VTSGRSQLPNPPKRILAVFQPHRYSRTNKFLYDFARALGEADAVLLAPVYSAGENPIQGA 417

Query: 414 LKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVVKS 451
             ++L ++I + +       +E  + L L +Q   + GD+V+   
Sbjct: 418 TSESLAKAIRIQHPNLPVAVAENFNQLTLLVQKHSLKGDLVLAMG 462


>gi|159900031|ref|YP_001546278.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893070|gb|ABX06150.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 432

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 14/75 (18%)

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK---SS-------- 452
           + L G    AL  AL         ++ +       +    GD V++    +S        
Sbjct: 359 IILDGTGSPALSAAL--GTEQERYQSFEQAIRAAFAEAEAGDTVLLSPGAASFGMFRNEF 416

Query: 453 -NSCGFYRLINLLLE 466
                F R++ LL E
Sbjct: 417 HRGEEFRRIVGLLTE 431


>gi|198245520|ref|YP_002216438.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207857783|ref|YP_002244434.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224583145|ref|YP_002636943.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|197940036|gb|ACH77369.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|206709586|emb|CAR33931.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467672|gb|ACN45502.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|56412738|ref|YP_149813.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|168237391|ref|ZP_02662449.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734517|ref|YP_002115436.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197361672|ref|YP_002141308.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56126995|gb|AAV76501.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194710019|gb|ACF89240.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197093148|emb|CAR58592.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197289700|gb|EDY29063.1| bifunctional protein FolC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|255320436|ref|ZP_05361617.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262378332|ref|ZP_06071489.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter radioresistens SH164]
 gi|255302408|gb|EET81644.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter radioresistens SK82]
 gi|262299617|gb|EEY87529.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter radioresistens SH164]
          Length = 356

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 15/132 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQEA-FFAIKGPHYDGHDFILHAVQ 62
           +   +L   +QG  +G  PQ  + G++  S  +    +  F        +GH ++  A  
Sbjct: 6   YRLEELAHLVQGQLVGQ-PQFELQGLA--SLENAQNNQIAFV-------NGHKYLEQARS 55

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
             AG+++   ++ A +         V +   A   L  A     K   + I  +    ++
Sbjct: 56  SKAGVLITTAELQAQLPEHQ-NFLIVPNPYLAFAILTHAF--ERKTKAVGIENTAQIHSS 112

Query: 123 KEMLTIALSSIK 134
             +   A     
Sbjct: 113 AIISDTAYIGHY 124


>gi|168242491|ref|ZP_02667423.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194450439|ref|YP_002046421.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194408743|gb|ACF68962.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205338617|gb|EDZ25381.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|116071782|ref|ZP_01469050.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
 gi|116065405|gb|EAU71163.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. BL107]
          Length = 448

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 115/379 (30%), Gaps = 45/379 (11%)

Query: 97  KLAVAARLRSKATII------AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +LA+  R    A +I      A+ GS GKTTT  ++T  L    +    +        VP
Sbjct: 78  QLAIWHRSDLLAALIDQQASIAVAGSHGKTTTSTLITTLLIEAGEDPTAVIGGV----VP 133

Query: 151 LTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +          + E   S             P + VIT +   H  ++ G++++ S 
Sbjct: 134 CLGSNGHSGQGRLLVAEADES-----DGSLVKFSPSLGVITNLELDHTDHYKGLDDLIST 188

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                 G E+    + +          A       + I         D      +     
Sbjct: 189 LQRFGRGCERLIANYDDPILQEHFEPTAWWSNQQSENIAFAALPLQLDGDRCTARFYENG 248

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S +         +      G H   N    L    +     +  +K L+       R   
Sbjct: 249 SAVG--------DFTLPMAGLHNLSNATAALAACRMEGVPFEALVKGLAQLQAPGRRFDL 300

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGEL 384
                       I + Y  +P+ ++A +++   +     SP     +  V          
Sbjct: 301 RGTWEG----RHIVDDYAHHPSEVRATLTMAQLMVSSGRSPLPSSPQRLVAVFQPHRFSR 356

Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFH------VLALKD---ALPRSIHVHYSETMDG 432
           +Q F    AE L   +   ++ V+ +G          AL     +L   + +  ++ +D 
Sbjct: 357 TQQFFEAFAEALQNCDALLLAPVYAAGEQTIPGVCSNALAQRIRSLRPDLEIAVADDLDQ 416

Query: 433 LFLFIQSSLVDGDVVVVKS 451
           L   ++      D+V+   
Sbjct: 417 LTDLVKQRSRPDDLVLAMG 435


>gi|62180937|ref|YP_217354.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128570|gb|AAX66273.1| multifunctional folylpolyglutamate synthase; dihydrofolate
           synthase, also has formylTHF polyglutamate synthase
           activity [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715417|gb|EFZ06988.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIASTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|94501144|ref|ZP_01307667.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
 gi|94426720|gb|EAT11705.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Oceanobacter sp. RED65]
          Length = 456

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 52/364 (14%), Positives = 107/364 (29%), Gaps = 23/364 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML      ++      G     +     ++    + DF + E   
Sbjct: 105 VMAVAGTHGKTTTTSMLA---WVLEDCGFQPGFLIGGVPKNFGVSARLGESDFFVVEADE 161

Query: 170 --SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S   + R           ++  +   H   F  ++ I +    +   +   G I    
Sbjct: 162 YDSAFFDKRSKFVHYHGRTVILNNMEFDHADIFKDLDAIKTQFHHLVRTIPSEGQIIFPA 221

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D     +K+           + G    A+ +           +   Q +    EV    
Sbjct: 222 ND---ANIKSTLDMGCWTPTVTLGGDWRAELKHVS-----GSVFEVYQGEQLVGEVRWKQ 273

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG---KRYRCALNQGFFTLIDE 344
            G H   N L  +     +      +I AL+ F   + R       +       F     
Sbjct: 274 TGQHNVNNALACIAAAHHVGILPKDSIAALNRFVGVKRRMELICDAKEVKIYDDFAHHPT 333

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLG-DMCEMGELSQSFHIDLAEVLSLYNISH 403
           +  +  A M  +       +          +G    E+ +  +     +       N   
Sbjct: 334 AIESTLAGMANSGEFKRIRAVIEPRSNTMRMGVHKAELPKAVEQADEIIWFQPKGLNWDM 393

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VVVVKSSNSCGFYRLIN 462
             +       + + +         + +D +   +  +   GD +V+   SN  GF  +  
Sbjct: 394 ENVV--EQCNIPNRVNDEPKSVLFDDIDAIIAHLVQTSEPGDGIVL--MSNG-GFGGIHK 448

Query: 463 LLLE 466
            L E
Sbjct: 449 KLAE 452


>gi|16765692|ref|NP_461307.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|161612899|ref|YP_001586864.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Paratyphi B
           str. SPB7]
 gi|167993054|ref|ZP_02574149.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168229741|ref|ZP_02654799.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468860|ref|ZP_03074844.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204928958|ref|ZP_03220101.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|16420908|gb|AAL21266.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|161362263|gb|ABX66031.1| hypothetical protein SPAB_00605 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455224|gb|EDX44063.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|204321502|gb|EDZ06701.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205328778|gb|EDZ15542.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205335862|gb|EDZ22626.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|261247571|emb|CBG25398.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994467|gb|ACY89352.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. 14028S]
 gi|301158923|emb|CBW18436.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913356|dbj|BAJ37330.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321222933|gb|EFX48004.1| Dihydrofolate synthase / Folylpolyglutamate synthase [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323130698|gb|ADX18128.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332989298|gb|AEF08281.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. UK-1]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|16761290|ref|NP_456907.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18]
 gi|29141014|ref|NP_804356.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|197249666|ref|YP_002147326.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|213021481|ref|ZP_03335928.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           404ty]
 gi|213161331|ref|ZP_03347041.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E00-7866]
 gi|213426980|ref|ZP_03359730.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E02-1180]
 gi|213585062|ref|ZP_03366888.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-0664]
 gi|213646798|ref|ZP_03376851.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           J185]
 gi|213852686|ref|ZP_03382218.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           M223]
 gi|289827484|ref|ZP_06546096.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-3139]
 gi|25293645|pir||AC0802 dihydrofolate synthase (EC 6.3.2.12) - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16503589|emb|CAD07597.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136639|gb|AAO68205.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|197213369|gb|ACH50766.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|87303830|ref|ZP_01086543.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87281659|gb|EAQ73653.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 401

 Score = 42.2 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 115/379 (30%), Gaps = 45/379 (11%)

Query: 97  KLAVAARLRSKATII------AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           +LA+  R    A +I      A+ GS GKTTT  ++T  L    +    +        VP
Sbjct: 31  QLAIWHRSDLLAALIDQQASIAVAGSHGKTTTSTLITTLLIEAGEDPTAVIGGV----VP 86

Query: 151 LTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
              +          + E   S             P + VIT +   H  ++ G++++ S 
Sbjct: 87  CLGSNGHSGQGRLLVAEADES-----DGSLVKFSPSLGVITNLELDHTDHYKGLDDLIST 141

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
                 G E+    + +          A       + I         D      +     
Sbjct: 142 LQRFGRGCERLIANYDDPILQEHFEPTAWWSNQQSENIAFAALPLQLDGDRCTARFYENG 201

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           S +         +      G H   N    L    +     +  +K L+       R   
Sbjct: 202 SAVG--------DFTLPMAGLHNLSNATAALAACRMEGVPFEALVKGLAQLQAPGRRFDL 253

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQI-----SPHGEGRRIAVLGDMCEMGEL 384
                       I + Y  +P+ ++A +++   +     SP     +  V          
Sbjct: 254 RGTWEG----RHIVDDYAHHPSEVRATLTMAQLMVSSGRSPLPSSPQRLVAVFQPHRFSR 309

Query: 385 SQSFHIDLAEVLSLYN---ISHVWLSGFH------VLALKD---ALPRSIHVHYSETMDG 432
           +Q F    AE L   +   ++ V+ +G          AL     +L   + +  ++ +D 
Sbjct: 310 TQQFFEAFAEALQNCDALLLAPVYAAGEQTIPGVCSNALAQRIRSLRPDLEIAVADDLDQ 369

Query: 433 LFLFIQSSLVDGDVVVVKS 451
           L   ++      D+V+   
Sbjct: 370 LTDLVKQRSRPDDLVLAMG 388


>gi|309792359|ref|ZP_07686827.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
 gi|308225580|gb|EFO79340.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 42.2 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 18/102 (17%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHY--SETMDGLFL 435
           G   +    DL   ++    + V L G     ++ A+ ++     H  +           
Sbjct: 356 GADKELAFADLGAAIARRVKALVLLDGTATPHVQAAVAQAGLLDPHAIHGPYAEFAQAID 415

Query: 436 FIQSSLVDGDVVVV---KSS---------NSCGFYRLINLLL 465
             +     G+ V++    +S             F R++  L 
Sbjct: 416 VARGLAEPGETVLLSPGCASFGMFRNEFHRGEEFRRIVQALE 457


>gi|118602562|ref|YP_903777.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
 gi|166199103|sp|A1AWJ9|LPXD_RUTMC RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|118567501|gb|ABL02306.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 332

 Score = 42.2 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 55/152 (36%), Gaps = 18/152 (11%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           ++T  ++ + I    +G      + GI+  S S    +        + +G+ +    +  
Sbjct: 1   MYTLGEIAKTINAKLVG-DANIEITGIAT-SLSANQTQL------TYINGNKYKQMLINS 52

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
            AG+V++N +++ +  + +     VD+V  A  K     + +            G  ++ 
Sbjct: 53  KAGVVILNNNLLKNCPTNA---LVVDNVYLAFAKATHLFKKQ-------TVHCQGTHSSA 102

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           ++    ++        +   N+    P  +  
Sbjct: 103 KINYAKIAPNCIIGKNVVIGNHCTIAPNVVIE 134


>gi|218674669|ref|ZP_03524338.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium etli GR56]
          Length = 471

 Score = 42.2 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 144/420 (34%), Gaps = 53/420 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VVV+T +  S   L      +  V  V  A   LA   R R   
Sbjct: 58  GHR----AENLGDAEVVVVSTAIKKSNPELIAAREKLLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L +       I     +            + ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGGIIN---AYGTNARMGEGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   +AVIT I P HL ++   + + +A  +  E +   G   +  D
Sbjct: 165 ES-----DGTFLKLPADVAVITNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVMCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---- 284
               + L  +     I    ++G++  AD + +  +    +S  +V+++ +    V    
Sbjct: 220 HPEVQSLVGRIEDRKII---TYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELK 276

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N    + + + L        K L+ F   + R               
Sbjct: 277 GLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTGEWNG----VQ 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           I + Y  +P  +KA +          +GR IAV            S   + A   +  + 
Sbjct: 333 IFDDYGHHPVEIKAVLRAA---REACKGRIIAV--HQPHRYSRLASLFEEFAACFNDADS 387

Query: 401 --ISHVWLSGFHVLALKDA------LPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
             ++ V+ +G   +   D+      +    H    +  + + L   +      GD VV++
Sbjct: 388 IFLAPVYAAGEDAIEGADSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLL 447


>gi|300021776|ref|YP_003754387.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523597|gb|ADJ22066.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 471

 Score = 42.2 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 110/390 (28%), Gaps = 48/390 (12%)

Query: 96  NKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
             + + AR R      A  I ITG+ GK+TT  ++   L    +          +IG  +
Sbjct: 98  GDIEIFARERAAQAPDAPFIGITGTNGKSTTTALIAHILRHAGRDVQLG----GNIGRAV 153

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                P      + EL    +     LT  ++P + V+  + P HL     IE  A+ K 
Sbjct: 154 LTLEDPAPERCHVIELSSFQID----LTPTLKPTVGVMLNVTPDHLDRHGTIENYAAVKE 209

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            + +G E         D+    +L+ +          +          L     CS +  
Sbjct: 210 RLVDGAEVAAVGL--DDEFGLAMLQRRIQKAPAIAFSAEKSIAPGYSLLDDTIICSNREA 267

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           + V+L          G          +      +      + +          G   R  
Sbjct: 268 LAVKLASLGGIATLRGKHNAQNALAAVAAVRECLNWIGQSSDLDWQGALASFPGLPHRME 327

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                G    +++S   N  S + A+                + G   + G +S      
Sbjct: 328 EIGRIGNVLFVNDSKATNADSTEKALLSF-------PRDVFWIAGGKPKAGGISALEKY- 379

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS------LVDGD 445
                    ++ V+L G         L   +    S T+D                    
Sbjct: 380 ------FGGVAKVYLIGESSEDFAQTLEGKVTFERSGTLDAAVAAAARDAKASTGAEP-- 431

Query: 446 VVVV---KSS---------NSCGFYRLINL 463
           VV++    +S             F +L+  
Sbjct: 432 VVLLSPACASYDQFRNFEVRGDAFRKLVEA 461


>gi|330892872|gb|EGH25533.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 172

 Score = 42.2 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           + PH +GR + + G     G         L   +       VW++  +            
Sbjct: 45  LRPHAKGRLLCLFG----CGGDRDRGKRPLMAEVVERLADGVWVTDDNPRSESPASIFDD 100

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     +  V + E        + +S    DVVV+  K 
Sbjct: 101 IRPGFAAADKVRFIEGRGQAIAQLIASANADDVVVLAGKG 140


>gi|302335880|ref|YP_003801087.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
 gi|301319720|gb|ADK68207.1| UDP-N-acetylmuramate--L-alanine ligase [Olsenella uli DSM 7084]
          Length = 473

 Score = 42.2 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 97/350 (27%), Gaps = 16/350 (4%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            L S AT IA+ G+ GKTTT  M+   +  +             I              +
Sbjct: 106 YLSSDATTIAVAGTHGKTTTSSMVATMIDHLGMD---PSFLIGGIVEEYGTNGRNGRGGY 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
            + E   S           + P + V+T I   HL ++  ++ I     +  + +   GT
Sbjct: 163 FVCEADES-----DGSFLYLNPDVVVVTNIEEDHLDHYGTLKNIERTFCQFMDLVGDAGT 217

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
           I +N D   +  L  +S    + +    G             + +    +E         
Sbjct: 218 IVINGDVPHYVELA-RSTGRRVVSYGFDGACDYVCIPEDSHHRLASSFSVETPSGDSVRV 276

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           V+    G H   N    + +   L  D+  A  ALS F     R                
Sbjct: 277 VIKSNPGRHNMANATAAIAVADALGCDLPRAADALSAFQGAHRRFTHVGDVDGVTVVDDY 336

Query: 343 DES-----YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
                        A       ++    PH   R  ++        + +    +       
Sbjct: 337 GHHPTEIRATLAAARDLDFKRIVCVFQPHRYSRTQSLQDQFAHAFDNADVLVVTEIFPAG 396

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
              I  V  +G  V            V +      L   +      GD++
Sbjct: 397 ETPIPGV--TGKTVSGGVAQAGGVDDVSFIANRKDLVRHLCDVCRPGDLL 444


>gi|238912356|ref|ZP_04656193.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Tennessee
           str. CDC07-0191]
          Length = 422

 Score = 42.2 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|222112122|ref|YP_002554386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
 gi|221731566|gb|ACM34386.1| UDP-N-acetylmuramate [Acidovorax ebreus TPSY]
          Length = 474

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 108/387 (27%), Gaps = 32/387 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI----------KKTYACIGSYNN 145
             LA          ++A+ G+ GKTTT  ML   L                   + +   
Sbjct: 101 QWLAEHVLQ--GRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARLG 158

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGI 203
               PL            + E                  RP  AV+  +   H   F  +
Sbjct: 159 APVRPLAGPGPLATAPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDL 218

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +I      +   +  +G + +N  +     +       G+    +      A  +   +
Sbjct: 219 GQIERQFHHLVRTVPPSGRVVVNGLEESLARVLHAGCWSGVANFGTAVSDFGAQGEPHDF 278

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +       +       +           +A    + +              +AL+ F   
Sbjct: 279 EVLQRGRTVARVQWTLTGVHNQLNALAAIAAAEHVGVTPAQA--------AEALARFENV 330

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +          +    + +  +P +++  +  L +        R  +L  + E   
Sbjct: 331 KRRMELRGMVRGIAVY----DDFAHHPTALRTTLDGLRRRVGPKGEGRGRILA-VFEPRS 385

Query: 384 LSQSF---HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            +         L   L   +++    +G    A     P       +  +  L   I+++
Sbjct: 386 NTMKLGTMKAQLPWALEPADLAFCHTAGLDWDAAAALAPMGARAQTAGDLPTLVGQIRAA 445

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  GD + V  SN   F  +   LL E
Sbjct: 446 VQPGDHI-VCMSNGS-FGGVHAQLLAE 470


>gi|116670132|ref|YP_831065.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
 gi|189028971|sp|A0JV95|MURC_ARTS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116610241|gb|ABK02965.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter sp. FB24]
          Length = 467

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 130/402 (32%), Gaps = 44/402 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
              AV  G   +  +   + +  +  +PV        AL   A  A  R    ++ + G+
Sbjct: 75  AAEAVVAG-SAIRADNPELQAARAAGLPVLHRS---EALA--AAMAGDR----VVTVAGT 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEI 175
            GK+TT  M+T+ L             N    VP           D  + E   S    +
Sbjct: 125 HGKSTTTSMVTVLLQGAGLDPTFAIGAN----VPSLGVNAASGTSDIFVAEADESDGSFL 180

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            +     RPHIAV+T + P HL  +   E +  +     E L   G +    DD     L
Sbjct: 181 NY-----RPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACADDPGARAL 235

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
             ++   G   + ++G +++A  +L           + V        +     G H A N
Sbjct: 236 AERTRTRGNTRVVTYGTAEDAQLRLHDG----GPGDVWVSTGAGRFALDLQVPGRHNALN 291

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                 +   L    D A  AL+ F     R              + D+  +        
Sbjct: 292 AAAAFAVALELGVAPDAASGALAHFSGASRRF---EFKGEGRGVRVYDDYAHHPTE---- 344

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-------- 407
             + L+         ++ VL     +   ++ F  D AE L+  + + V           
Sbjct: 345 VRAALAAARSVAGDHKVHVLFQPH-LFSRTREFAADFAEALNAADTALVLDIYPAREDPI 403

Query: 408 -GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            G     + D L     +  +E        + ++   GD+V+
Sbjct: 404 PGVSSKLIGDRLSAGGRLVAAEDA---VRAVVANAAAGDIVL 442


>gi|227824226|ref|ZP_03989058.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904725|gb|EEH90643.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 429

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 89/299 (29%), Gaps = 26/299 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD+ + E+GM  L +   +     P ++VIT +   H            A AE   G+ 
Sbjct: 135 KVDYAVIEVGMGGLWDSTNVIV---PELSVITNVTLEHTDRLGK---TIEAIAEQKAGII 188

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K     +   D     +   +       +Y +G+    DF         ++         
Sbjct: 189 KDHVPVVTAADGSALEVIRVTSEEKSAPLYVYGE----DFSATLLAGSMQEQLFLYPFHS 244

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
              EV  H  G H   N  + L    +L        +   +              +++  
Sbjct: 245 GEREVTIHLAGAHQIVNAAVALKAAEVLAKKDPAITEKKILKGMDLTTWPGRMELIHERP 304

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++N +   +      L    PH  G R  + G M            ++A++L  
Sbjct: 305 DVILDGAHNPS--GVTVLRRALDTYYPH--GHRYFIFGMMG------DKDVSEVAQILFR 354

Query: 399 YNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +   ++          +     A          + +   F          DVV+V  S
Sbjct: 355 -DTDTIYTVLADNGTRAEKPDVLARRLHKKAIPMDDLKTAFETAVHEAGPDDVVLVCGS 412


>gi|117924035|ref|YP_864652.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
 gi|117607791|gb|ABK43246.1| UDP-N-acetylmuramate [Magnetococcus sp. MC-1]
          Length = 466

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 56/378 (14%), Positives = 105/378 (27%), Gaps = 38/378 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I  TG+ GKTTT  ML              G     I              + + E    
Sbjct: 107 IVATGTHGKTTTSSMLARLWEEAGWE---PGFLIGGIPADFGRGSRFPKGPWVVVEGDEY 163

Query: 171 HLGEIRFLTH--LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                         RP   ++  +   H   ++ +E I      +   + ++G + +N D
Sbjct: 164 DTAFYDKRPKFLHYRPRTLILNNLEFDHADIYADLEAIRVQFRLLLRTVPRSGVVLINGD 223

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     L   + +  +     +           +  Q     W  ++ + +  +V    +
Sbjct: 224 DEEVTKLAEYACSPVL-----YYGIHGDYHYRARLNQKDGSHWTLIKEEQELFDVAWGQV 278

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N L                   L  F     R +             + + +  
Sbjct: 279 GMHNIYNGLAAASAALEHGMPAHVVKAGLEGFSGVARRLQVRAQLGG----VTLYDDFAH 334

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P ++    + L  +       RI  + +        +     LA VL       V    
Sbjct: 335 HPTAI---KTTLEGLRAKVGQARIWAIIEPRSNTMRRKVHQSRLAGVLGRA--DRVIFVR 389

Query: 409 FHVLALKDALPRSIHV-------------HYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                L      ++ V               +E ++ +   +   L  GD ++V  SN  
Sbjct: 390 PEDKRLHSDELLNVDVVVGEINRAGLNWARVAENVENIVQMVGEDLRPGDHLLV-MSNG- 447

Query: 456 GFYRLINLL----LEEFP 469
           GF  L   L     ++F 
Sbjct: 448 GFDGLHGKLEMLMQQKFE 465


>gi|313813206|gb|EFS50920.1| UDP-N-acetylmuramate--alanine ligase [Propionibacterium acnes
           HL025PA1]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 57/400 (14%), Positives = 121/400 (30%), Gaps = 39/400 (9%)

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
            GA  VVV++ +      L      V+     L    +  R  + A ++   G V    T
Sbjct: 73  AGARTVVVSSAIRPDNPEL------VEAHRLGLR---IWHRSAALAALMLGRGGVSIAGT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD---VDFGIFELGMSHLGEIRFLT 179
               T                +  IG PL    M       +  + E   S    +++ +
Sbjct: 124 HGKTTTTGMVATMLDCAGADPSYVIGSPLAATGMSSHLGGGEAFVVEADESDGSFLQYPS 183

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            +      V+T +   HL N+   +        +     +   +  N DD     L  + 
Sbjct: 184 QI-----VVVTNVEADHLDNWGTPQAYFDGFVSMATR-PEVRYVVTNADDPGAAELACRL 237

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
            +     + ++G+S+ A+ +L         +   +        +     G +   N    
Sbjct: 238 ESTDTVRVVTYGESEQAEVRLVDLDLNGTTASATLVHGPTQGRLELQVPGRYNLSNAAAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
             + S+L       +  ++ F     R +      +      + + Y  +P  ++A +  
Sbjct: 298 YCVGSLLGISHQDLLTGIASFTGTLRRFQLVGRVAD----VSVFDDYAHHPTELRATLGA 353

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-----------G 408
             ++     G+   +      +   ++ F  +    L+L     V +S           G
Sbjct: 354 ARRV---VTGQGRVIACFQPHLFSRTRDFAGEFGSALTLA--DRVIVSDIYPAREDPIPG 408

Query: 409 FHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                + DA +       Y      L   +   +  GD+V
Sbjct: 409 VTGELVHDAVIAAGGDSRYVPDKQDLPEALAEEVRPGDLV 448


>gi|254993143|ref|ZP_05275333.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Listeria
           monocytogenes FSL J2-064]
          Length = 416

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 116/375 (30%), Gaps = 45/375 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           N  M+     L IPV         L          S+A I+ ITG+ GKTTT  ++   L
Sbjct: 85  NNPMIEKALKLKIPVI----TEVELA------YQISEAPIVGITGTNGKTTTTTIIHHML 134

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI-FELGMSHLGEIRFLTHLVRPHIAVI 189
           ++             +IG P +        D  I  EL    L  +       +PHI+VI
Sbjct: 135 NA---HKENSSLLAGNIGFPASAVAENATSDQYISMELSSFQLMGVE----TFKPHISVI 187

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
           T I  AHL   +   E   AK  I +       + +N+D    + L  ++ A  I    +
Sbjct: 188 TNIYEAHLDYHTDRSEYVQAKWHIQKNQTADDFLVINWDQEELKNLTKQTKAQVIPFSTT 247

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
                    Q        +   +    +           G H  +N+L ++ +   L   
Sbjct: 248 ---------QRLGQGSYVQNGNIMFNDEVIGARDNILLPGEHNLENVLASVAVAKTLGVT 298

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEG 369
            +  +  L  F        R +  +        ++S   N  + ++A+           G
Sbjct: 299 NEEIMHVLETFKGV---EHRTQFVVEWQGRKFYNDSKATNILATQSALKGFKNPVVLLAG 355

Query: 370 RRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSE 428
                       G    +   +L       N+  + + G     +        I VHY +
Sbjct: 356 ------------GLDRGNSFDELLPFFK--NVKALIVFGETADKIGRVGKIAGIDVHYVD 401

Query: 429 TMDGLFLFIQSSLVD 443
            ++            
Sbjct: 402 NVEAAVPVAYRESAP 416


>gi|237752986|ref|ZP_04583466.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375253|gb|EEO25344.1| udp-n-acetylmuramoylalanyl-d-glutamate-2 [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 446

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 62/472 (13%), Positives = 125/472 (26%), Gaps = 96/472 (20%)

Query: 18  SIGIVPQGFVNGISIDSRSI------APQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVN 71
                    +  IS DSR +      A   AF   K        ++ +A + G  + +  
Sbjct: 5   LDSNFSNSHIRFISDDSREVLSNECNAKNCAFLITKSNKC----YLKNAKENGFEIFITP 60

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            D+   +                               IIAITG+ GKTTT  M+   L 
Sbjct: 61  QDLKQFLD--------------------------LNLKIIAITGTNGKTTTAAMIYSILL 94

Query: 132 SIKKTYA-CIGSYNNHIGVPLTLARMPV----------------DVDFGIFELGMSHLGE 174
            +    A          GV      +                  +  + + E+  S    
Sbjct: 95  DLGYKVALLGTRGFFINGVKKREKGLTTPSLLEIYSAITEARKENCTYFVMEV--SSHAI 152

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           ++     +   + ++T I   HL     +E   + K   F          +N D+     
Sbjct: 153 VQERIEGLEFTLKILTNITSDHLDYHKTLENYIATKNSFFLSPL--DLKLINKDEPNARY 210

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
              K+   GI++  +F                 +    ++    +   +     G H   
Sbjct: 211 ALQKAITYGIESPATFQVRAY---------SLKDGITAQIAYGKEESSLQCSLFGKHNLY 261

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L  +  V +L  +    I            G   R  +      +I +  +       
Sbjct: 262 NALAAISAVKLLENEPLQEICEKLENFG----GVLGRMQVVSQNPLIIVDFAHTEDG--- 314

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
               +          +   V G     G            + +      ++++  +  + 
Sbjct: 315 ----MEKIFQSFPHRKIAVVFGA----GGDRDKTKRPKMGLCAAKYAQKIYITSDNPRSE 366

Query: 414 ------------LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
                       +   L   + ++  E          S+L   +V+++  K 
Sbjct: 367 IPSAIIQEIFNGIPQTLREKLEIYLEENRAKAINMAISALKSDEVLLILGKG 418


>gi|113866800|ref|YP_725289.1| cyanophycin synthetase [Ralstonia eutropha H16]
 gi|113525576|emb|CAJ91921.1| cyanophycin synthetase [Ralstonia eutropha H16]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  +++                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +        S I   E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYINSVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +            +   +   A  + +  +        
Sbjct: 588 IVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPNQPAMATHRAQGKRVVFVDGAD 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   EV++    + +  +G       N + ++     L  D  T  + L+ F    
Sbjct: 648 IVASEGDTEVRIAVAEVPLTRNGTIGFQVDNAMSSIAAAWALGIDWPTIRRGLATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP ++ A  + +  I      R + + G      + 
Sbjct: 708 QTAPGRFNVFDYRGATLIAD-YGHNPDAILALCNAVETIPAK--RRMVVISGAGDRRDDD 764

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            +     L  V        V L           G  +  L++ L  +      E + G  
Sbjct: 765 IRRQTQILGGV-----FDEVILYQDQCQRGRADGEVLALLREGLQGAQRAGQVEEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  S L  GD+ +V
Sbjct: 820 LAIDTALSHLQPGDLCLV 837


>gi|295111742|emb|CBL28492.1| UDP-N-acetylmuramate--alanine ligase [Synergistetes bacterium SGP1]
          Length = 497

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 116/349 (33%), Gaps = 31/349 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  ML++ LS           Y       +    +  +    + EL  S
Sbjct: 113 VGVAGTHGKTTTSSMLSLVLSRAGLA---PTLYVGARMRDMGTNALLGEGRLFLAELDES 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                     L RP ++++T +   H+ +F   E++  A A    G ++   + +  +D 
Sbjct: 170 -----DGSFELFRPAVSIVTNVDWDHVDHFPSFEDVILAFARFASGRKEGAPLIVCAEDE 224

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +       G    Y +G+S +        +     S    +       +     G 
Sbjct: 225 GAQRMLE--GLRGPLLRYGWGRSWDWGAFDLVPRATGGISCSVCRKGKVLGPLELSVSGE 282

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N L  L    +L    + A   L  FH    R +             + + Y  +P
Sbjct: 283 HNVLNALAALAAADVLGVPFEKAAATLKDFHGAARRLQTKGTLGG----VTVIDDYAHHP 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL---- 406
             + A +S L  I P+       +L         + +    L    +L     + L    
Sbjct: 339 TEIAATLSALRGIYPNR----RILLLYQPHRYTRTAALVEPL--TAALSGADEILLLPIY 392

Query: 407 -SGF-----HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +G         A+ + L R    + +    D     +++   DGD+++
Sbjct: 393 SAGEPPQQVSAEAIVERLRRAGKRIAFCRDEDDALRAVRALSQDGDLLL 441


>gi|254526648|ref|ZP_05138700.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538072|gb|EEE40525.1| UDP-N-acetylmuramate--alanine ligase [Prochlorococcus marinus str.
           MIT 9202]
          Length = 468

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 47/366 (12%), Positives = 103/366 (28%), Gaps = 32/366 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L          T  A+ GS GKT+T   L+  L       + I      I     
Sbjct: 107 EILAMLMETY------TAFAVAGSHGKTSTSTFLSTILELCTHDSSSITGGIIPI---YN 157

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 +  + + E+  S         +  +  I +I  I   H  +FS + E+ S+   
Sbjct: 158 SNCHLENTKYLVAEVDES-----DGTINQYKSDIGIINNIDFDHCDHFSDLNEVISSFRS 212

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             +  +K    F            +K      K +         + +    K     +++
Sbjct: 213 FAKNSKKLLLNFDCETSRNNFFSNSKWSNTTTKNVAYAIIPTQINSKYTIGKYYEHGNFV 272

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                                 N+   +    ++  D     + +      + R +    
Sbjct: 273 SNLNIPIPGLHNLS--------NITAAIAASRMIGVDFIEIKRNIKYLKLPKKRFEFRGQ 324

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +  +       N    ++K     + Q   +   +   +           + F  + 
Sbjct: 325 INERLLYDDYAHHPNEIKETIKLGKLFIKQKHNNECQKSRLIAIFQPHRYSRVKQFTKEF 384

Query: 393 AEVLSLYNISHV---WLSGFH------VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLV 442
           AE LS  ++ +V   + +G           + D +  ++ +V Y      +         
Sbjct: 385 AEELSKADVIYVTSIYGAGEENEDRITSKIITDLIYKKNKNVCYINNYHKITENFYELTQ 444

Query: 443 DGDVVV 448
            GD+++
Sbjct: 445 KGDLIL 450


>gi|205353478|ref|YP_002227279.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|205273259|emb|CAR38224.1| folylpolyglutamate synthase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628571|gb|EGE34914.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 9]
          Length = 422

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|213622847|ref|ZP_03375630.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           E98-2068]
          Length = 385

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 299 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAAQPE 358

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 359 DTVLVCGS 366


>gi|257868678|ref|ZP_05648331.1| FolC family protein [Enterococcus gallinarum EG2]
 gi|257802842|gb|EEV31664.1| FolC family protein [Enterococcus gallinarum EG2]
          Length = 446

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 88/311 (28%), Gaps = 19/311 (6%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE--I 206
             +  +      D  IFE G+    +   +     P +  ITTI   H       EE   
Sbjct: 127 TAMAFSYFQKHADIAIFEAGIGGKWDSTNVFI---PILTAITTIGLDHTDILGETEEEIA 183

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK--NADFQLRKWK 264
                 I + +               E + +K +A   K   S+       +        
Sbjct: 184 LQKAGIIKKNIPIVTGNISQNAVKIIEEVASKKNAPLSKKNTSYQVHYVKQSPESHSPKD 243

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             S + +       + + +     G +  +N    L +  +     + AI+  S+    E
Sbjct: 244 SISGEMFHFENEDFQFLNLRIPLCGKYQVENAATALQLFLLYCQQQNKAIQKESIQKALE 303

Query: 325 GRGKRYRCALNQGFFTLIDE-SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                 R        T+I + ++N +                       A+        +
Sbjct: 304 KARWPGRMEKISSQPTIIIDGAHNPHAIKEFVDTVTEKFQQGKKYILFSALTT------K 357

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALK--DALPRSIHVHYSETMDGLFLFIQSSL 441
            S+     + ++ +      +  +  +  ALK  D +  +    Y +        I + +
Sbjct: 358 NSRKMIRQMQQIPNNC---LIITTFDYPKALKKEDLVRENSQFKYYQEWQQGIKEIVAKM 414

Query: 442 VDGDVVVVKSS 452
              D + +  S
Sbjct: 415 GSKDTLFITGS 425


>gi|94498175|ref|ZP_01304736.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
 gi|94422305|gb|EAT07345.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sphingomonas sp.
           SKA58]
          Length = 443

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 99/354 (27%), Gaps = 36/354 (10%)

Query: 97  KLAVAARLRSKA-TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
           +L   AR       ++ ITG+ GK+TT  ++   +          G+    I     L  
Sbjct: 97  ELFALARPTLPPHKVVGITGTNGKSTTTALIHHIIEQAGYPTVMGGNIGLPILSQPPLEP 156

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE 215
                   + EL    +         +   +AV+  I P HL  + G E   ++K     
Sbjct: 157 NLKGAGVYVLELSSYQIDLTH----SLDCDVAVLLNITPDHLDRYDGFEGYVASK----- 207

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                              L A   A     I +  +   +        + S +  +EV 
Sbjct: 208 -----------------ARLFAMQSAGHKAVIATEDEPSRSVSTQICDTKGSGEDVVEVA 250

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                              N       +          +   +          R +    
Sbjct: 251 STQVDTTEQLAWPALQGPHNAQNVAVAMVTAAVLDIDPVTTKAALASYASLPHRMQTVRT 310

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 +++S   N A    A ++ +  +  G+ R   +LG     G        + A  
Sbjct: 311 LNGVLYVNDSKATNAA--STAPALAAWPAKDGKPRIHWILG-----GVAKSENLDECAPH 363

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
               N++H +  G       D L   + V  SE +             GDVV++
Sbjct: 364 F--GNVAHAYTIGEAGHMFADLLRPHMAVDDSEMLSAAVRRAARIAQPGDVVLL 415


>gi|308063821|gb|ADO05708.1| hypothetical protein HPSAT_04940 [Helicobacter pylori Sat464]
          Length = 335

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++        +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|298735964|ref|YP_003728489.1| ferrochelatase [Helicobacter pylori B8]
 gi|298355153|emb|CBI66025.1| ferrochelatase [Helicobacter pylori B8]
          Length = 343

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++        +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|315586929|gb|ADU41310.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 335

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++        +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|288919051|ref|ZP_06413392.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EUN1f]
 gi|288349591|gb|EFC83827.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Frankia sp. EUN1f]
          Length = 554

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 401 ISHVWLSGFHVLALKDALPRS---IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +  V L G     +  AL R    + V  +  MD            GD V++
Sbjct: 474 LRAVVLMGRCADEIAAALARHAPDVPVERAGGMDDAVEAAMKLAAPGDTVLL 525


>gi|283786393|ref|YP_003366258.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Citrobacter rodentium ICC168]
 gi|282949847|emb|CBG89470.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Citrobacter rodentium ICC168]
          Length = 422

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L         +++   +   ++     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGQGGVYDSVAQAWRAARADAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|217032294|ref|ZP_03437791.1| hypothetical protein HPB128_142g42 [Helicobacter pylori B128]
 gi|216946060|gb|EEC24673.1| hypothetical protein HPB128_142g42 [Helicobacter pylori B128]
          Length = 346

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++        +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|296134046|ref|YP_003641293.1| FolC bifunctional protein [Thermincola sp. JR]
 gi|296032624|gb|ADG83392.1| FolC bifunctional protein [Thermincola potens JR]
          Length = 430

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 68/278 (24%), Gaps = 21/278 (7%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++VIT +A  H+             AE+  G+ K   + +                  
Sbjct: 157 PLVSVITNVAMDHMDYLGH---SIREIAEVKAGIIKLNGLAVTAVQDPEA--LEVISRTA 211

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +      +                Q++           V    +G H   N +  +  V
Sbjct: 212 RERNARLIEVYKEARWEITDSSVWGQTFNLNTSNRTYKNVRISLLGQHQIVNAVTAIVTV 271

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
             L       I   +V +         R  + Q    +I +  +    +     ++    
Sbjct: 272 EALETLGVQ-IGQDAVENGMASVKWPARLEIMQRQPMVIIDGAHNVHGAKSLRNALQEVF 330

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SGFHVLALKDA 417
           S         +LGD              +   L+      V        +G      ++ 
Sbjct: 331 SYDKLILVFGMLGD---------KEREKVVAELAPLAAKVVITRPNSPRAGQWDKVAEEV 381

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
                 V   E +             GD+V +  S   
Sbjct: 382 KKYVNDVRVIEDIHQAVDTAVKIAEPGDLVCITGSLYM 419


>gi|261749523|ref|YP_003257209.1| putative folylpolyglutamate synthase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497616|gb|ACX84066.1| putative folylpolyglutamate synthase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 433

 Score = 41.8 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 13/94 (13%), Positives = 29/94 (30%), Gaps = 2/94 (2%)

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE--VLSLYNISHVWLSGFHVLALKDAL 418
            Q+          VLG + E        +  L         NI   +      + +K   
Sbjct: 329 KQLKKESYKNLHLVLGFVKEKKVEKLLRYFPLEAFYYFCQPNIERKFSIENLKILVKKMF 388

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  + +  ++    L  +S     D++++  S
Sbjct: 389 KNNRKICFFPSVKKALLSAKSQAKKKDLILISGS 422


>gi|327194621|gb|EGE61471.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli
           CNPAF512]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 66/445 (14%)

Query: 33  DSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI--- 83
           DS ++        E F         GH     A   G A +VVV+T +  S   L     
Sbjct: 41  DSANVQRLRNKGIEVFV--------GHR----AENLGDAEVVVVSTAIKKSNPELIAARE 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V  V  A   LA   R R     IAI G+ GKTTT  ++   L +       I   
Sbjct: 89  KLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGG 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +            + ++ + E   S           +   +AVIT I P HL ++   
Sbjct: 143 IIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPADVAVITNIDPEHLDHYGNF 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + +A  +  E +   G   +  D    + L  +     I    ++G++  AD + +  
Sbjct: 195 DAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKII---TYGENPQADVRFKNV 251

Query: 264 KQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +S  +V+++ +    V           G H   N    + + + L        K 
Sbjct: 252 RIDGTRSIFDVEIRRRRTGQVTELKGLVMPMPGRHNISNATAAIAVANRLGISSVDIAKG 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHG 367
           L+ F   + R               I + Y  +P  +KA +           ++   PH 
Sbjct: 312 LASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIKAVLRAAREACKGRIIAVHQPHR 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VH 425
             R  ++  +       + S  +          I      G    +L   +    H    
Sbjct: 368 YSRLASLFEEFAACFNDADSIFLAPVYAAGEDAIE-----GVDSTSLVSRIKSGGHRDAR 422

Query: 426 YSETMDGLFLFIQSSLVDGD-VVVV 449
           +  + + L   +      GD VV++
Sbjct: 423 FLSSAELLPQMVAEVAKPGDFVVLL 447


>gi|330893967|gb|EGH26628.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
           [Pseudomonas syringae pv. mori str. 301020]
          Length = 45

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 84  PVFGVDDVLGALNKLAVAARLRS-KATIIAITGSVGKTTTKEM 125
           P   V D   AL +L    R       + A+TGS GKTT KEM
Sbjct: 2   PQLVVIDTRKALAQLGAMNRNAFIDKPVAAMTGSSGKTTVKEM 44


>gi|182420535|ref|ZP_02643564.2| Mur ligase family protein [Clostridium perfringens NCTC 8239]
 gi|182380050|gb|EDT77529.1| Mur ligase family protein [Clostridium perfringens NCTC 8239]
          Length = 560

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 118/372 (31%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 163 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 222

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G ++         +A+IT++A  H+       I ++   K     
Sbjct: 223 TNPQVEVGALETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H G       N+L+++  +  +  ++   + +L            
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + + I  +       ++  +   G+    + 
Sbjct: 403 RQNIIELENFKIILD-YGHNPEAFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 455

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L   ++  N   + +       G   L + + +   I+      V        +    
Sbjct: 456 KELGR-IAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIK 514

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 515 KAISMAKEGDII 526


>gi|227494649|ref|ZP_03924965.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831831|gb|EEH64214.1| UDP-N-acetylmuramate--L-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 455

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 126/399 (31%), Gaps = 50/399 (12%)

Query: 68  VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           VVV+T +  +   L      ++PV        AL   A           +A+ G+ GKTT
Sbjct: 65  VVVSTAVRETNPELAFAREHNLPVIHRS---QALAIAAQ------GLDFVAVAGAHGKTT 115

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ML  ALS+              +              F + E   S    + +    
Sbjct: 116 TSGMLAAALSAAGMD---PSFAVGGVVAGFGTGAHLGQGRFFVAEADESDGSFLNYT--- 169

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P +A++T + P HL ++   E   +   E    +   G + +  DD     L  +  A
Sbjct: 170 --PRVALVTNVEPDHLDHYGSREAFEAVFDEFVTRITADGALVVCADDPGASALGQRVLA 227

Query: 242 LGIKTIYS---FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
            G +                Q+ + +  +  S   V    +++ V  +  G H   N   
Sbjct: 228 TGRRVWSYGLDSSVEGAQHLQISEVELHASGSSFLVSYGDETVAVHLNVSGLHNVLNATG 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            L +   L   +    +AL  F     R +       +  F       +   A++K A  
Sbjct: 288 ALAVALDLGISLSVMAEALKAFTGTGRRFEFKGEVAGKRLFDDYAHHPSEVAAALKQARV 347

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------- 407
           V+ +       +          +   +++F  + A  L+L     V L+           
Sbjct: 348 VVGEGKVVVLFQPH--------LYSRTRNFAAEFAASLALA--DQVVLADIYGAREDPMP 397

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           G     + D L   + V +   ++            GD+
Sbjct: 398 GITSALIGDKL---VEVAFVGPLETAAEVAAELTEAGDI 433


>gi|116873037|ref|YP_849818.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123461107|sp|A0AJ57|MURC_LISW6 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|116741915|emb|CAK21039.1| UDP-N-acetylmuramate-alanine ligase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 447

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 115/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 +  +   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------NAQYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   +  G +    +F   DD     L           I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETL--GKQVKKAVFALGDDEELRKL------SLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +                G H   N L  + +       V
Sbjct: 223 FDEENEFQAKNVIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   K L  F   + R             +         +             V++   P
Sbjct: 283 EAVKKELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +       G V++   
Sbjct: 396 IKEEHTEELLKY------PGAVILFMG 416


>gi|55163150|emb|CAH57483.1| putative UDP-MurNac-tripeptide synthetase [Actinoplanes
           teichomyceticus]
          Length = 298

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 53/283 (18%), Positives = 89/283 (31%), Gaps = 28/283 (9%)

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
           R      T     HL      EE  +AKA +F+G  + G   LN+DD     L A     
Sbjct: 2   RFAAGGYTNFGQDHLDFHPTTEEYFAAKARLFDGRTEVG--VLNHDDPAVMSLLAPGMVT 59

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
              +  +      +D +   +     Q ++     G ++E      G H   N L+ L +
Sbjct: 60  YSASGNTEATWWASDVRPSDF----GQRFVAHGPGGITVETGVALPGLHNVANALLALAL 115

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
           +  +  D   A   +       GR ++                Y   P ++ AA++ L +
Sbjct: 116 LVAVGIDPQVAGTGVRECRGVPGRLEQVAAPGEILGVVD----YAHKPNAIVAALAALRE 171

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDA 417
           ++    GR + VLG     G         L    +      V ++          A++ A
Sbjct: 172 LASARGGRLVCVLGA----GGDRDRGKRPLMGEAAARGADLVIITDDNPRTEDPAAVRAA 227

Query: 418 LPRSI-------HVHYSETMDGLFLFIQSSLVDGDV--VVVKS 451
           + R          V                   GDV  V+ K 
Sbjct: 228 VRRGAEEAHTAAKVLEVAGRRAAIDEAVRLAAAGDVIAVLGKG 270


>gi|229916984|ref|YP_002885630.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
          [Exiguobacterium sp. AT1b]
 gi|229468413|gb|ACQ70185.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
          [Exiguobacterium sp. AT1b]
          Length = 112

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 6  TFHDLLQAIQGHS----IGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAV 61
          T  D+L  +        +    +  + GI      I     +   +  +  G D +  A+
Sbjct: 5  TLRDVLATLDSVLSWSYLDHPEEMTIRGIGTTPEKINKMFLYICKRPINERGVDLVRAAI 64

Query: 62 QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
          + GA  +V +  + A      +PV    DV  A  +L
Sbjct: 65 RNGAVAIVTDRPIDA-----RVPVIYCRDVERAREQL 96


>gi|126695359|ref|YP_001090245.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9301]
 gi|126542402|gb|ABO16644.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9301]
          Length = 448

 Score = 41.8 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 109/367 (29%), Gaps = 34/367 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L          T +A+ GS GKT+T   L+  L    +  + I         P+ 
Sbjct: 87  EILAMLMRTY------TALAVAGSHGKTSTSTFLSTILELCTRNSSSITGGII----PIY 136

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +   +D   + + E+  S         +  +  I +I  I   H  +FS + E+ S   
Sbjct: 137 NSNCHLDNTKYLVAEVDES-----DGTINKYKSDIGIINNIDFDHCDHFSNLNEVISTFK 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              +  +K    F             K      K +         + +    K     ++
Sbjct: 192 SFAKNSKKLLLNFDCETSRNNFYSNWKWSNSTAKNVTYAIIPIEINSKYTIGKYYENGNF 251

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +          +     G H   N+   +    ++  D     K +      + R +   
Sbjct: 252 IS--------SLNIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKRFEFRG 303

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +  +       N    ++K    ++ Q       +   +           + F  +
Sbjct: 304 QLDERSLYDDYAHHPNEIKETIKLGRLLIQQNHNKECQKSRLIAIFQPHRYSRVKQFTKE 363

Query: 392 LAEVLSLYNISHV---WLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441
            AE LS  ++ +V   + +G           + D +  ++ +V Y      +        
Sbjct: 364 FAEELSKADVIYVTSIYGAGEGNEDRITSKIITDLIYKKNKNVSYINNYYEVTKNFYELT 423

Query: 442 VDGDVVV 448
             GD+++
Sbjct: 424 QKGDLIL 430


>gi|322435116|ref|YP_004217328.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX9]
 gi|321162843|gb|ADW68548.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX9]
          Length = 335

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 49/215 (22%), Gaps = 38/215 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQ 62
               +L  ++     G   +  + GI+ I        +  F A +        +   A  
Sbjct: 1   MKLSELAASLGATLQGGDGETEITGIAGI--EQAGAGQITFVANQ-------RYAGLART 51

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS-------KATIIAITG 115
             A  ++V          +S     + D   A  K                   +IA T 
Sbjct: 52  TKASAILVE----PGFPEVSAATLRLKDPYLAFAKAIELFYQAPIYAASIHPTAVIAATA 107

Query: 116 SVG-----------KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
           ++G           +          L      Y  +   +        + R    V   +
Sbjct: 108 TIGARAHIGAYVVVEDGVVIGEDAVLHPHVVVYPHVIIGDRFTAHAHAIIREHCRVGDDV 167

Query: 165 FEL-----GMSHLGEIRFLTHLVRPHIAVITTIAP 194
                   G    G  R       P    I    P
Sbjct: 168 ILQNGVVIGADGFGFARKPKEAGEPGWYKIVQSGP 202


>gi|254994608|ref|ZP_05276798.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Mississippi]
          Length = 474

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 82/359 (22%), Gaps = 47/359 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              I ++GS GKT+T  M+   +                              ++ + E 
Sbjct: 110 GRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFH---YGNNYKMGAGEWAVVEG 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G            IAV+T +   H   +S +E +    ++    ++  G   +  
Sbjct: 167 DESDAGFTELPC-----EIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASVMPS 221

Query: 228 DDSFFELLKAKSHA---------LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             SF      K            L        G +   D      ++      + V  + 
Sbjct: 222 RLSFTLGNGTKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRLPVPGRH 281

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +               +         V    + ++                    
Sbjct: 282 NVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIANVGGVTFVDDYAHHPTEIEA 341

Query: 339 FTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSF 388
                +    +        P             +         +L D+   GE   S   
Sbjct: 342 SRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGEEVISGCE 401

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +D+   +       V                     ++ T D +   + S    GDVV
Sbjct: 402 SLDIVREIKSRGFDQVV--------------------HASTPDAITDIVASVAQPGDVV 440


>gi|77164536|ref|YP_343061.1| folylpolyglutamate synthetase [Nitrosococcus oceani ATCC 19707]
 gi|254433304|ref|ZP_05046812.1| FolC bifunctional protein [Nitrosococcus oceani AFC27]
 gi|76882850|gb|ABA57531.1| Folylpolyglutamate synthetase [Nitrosococcus oceani ATCC 19707]
 gi|207089637|gb|EDZ66908.1| FolC bifunctional protein [Nitrosococcus oceani AFC27]
          Length = 432

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 56/197 (28%), Gaps = 13/197 (6%)

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +   ++   E           +        G    QN    L  + ++ A +  +  A+ 
Sbjct: 219 RDFHYQMAGEGWSWWSNGSHYADLPHPALQGACQYQNGAAALMALKLMAARLPVSETAIR 278

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R++C   +            N    +     L+       GR  AVLG +
Sbjct: 279 DGLSAVRLPGRFQCLPGEMERIFD---VAHNLQGARWLARSLTDRP--CGGRTYAVLGML 333

Query: 379 CE---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +    G +S   +      +    +      G    AL + +       Y +++   + 
Sbjct: 334 ADKDVAGVVSVLENAIHGWFVGGLAVDR----GLSGQALAERMGHLTPAIY-QSVAEAYR 388

Query: 436 FIQSSLVDGDVVVVKSS 452
               +   GD V+   S
Sbjct: 389 AALEAAQPGDRVLAFGS 405


>gi|297569886|ref|YP_003691230.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
 gi|296925801|gb|ADH86611.1| UDP-N-acetylmuramate [Desulfurivibrio alkaliphilus AHT2]
          Length = 502

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 115/389 (29%), Gaps = 30/389 (7%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
           A+     +    + + G+ GKTTT  +L   L          G     I      +    
Sbjct: 124 ALRHYFLAGRRSLVVAGTHGKTTTSSLLATMLDHAGLD---PGFMIGGIVQAFGRSSRTG 180

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVR--PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E               +   P + ++T +   H   ++ +  + +A A +   
Sbjct: 181 GGPFFVSEGDEYDTAFFDKGPKFLHYAPEVCILTGVEFDHADIYADLAAVKTAFARLVAL 240

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G +    DD     L A   A      Y  G  + AD++L K       +   V  
Sbjct: 241 MPPQGRLVAFVDDPVVRELVA--VAPCPVLGYGEGAGEGADWRLDKLTVSPGGTGFTVLR 298

Query: 277 QGK-SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
           QG+   E      G H A N L  + ++  L          L+ F     R    +    
Sbjct: 299 QGELFGEFFSPMPGRHNALNALAVIAVLDHLGVPPAEIAAGLAAFTGVRRR----QEVRG 354

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS--QSFHIDLA 393
           +     + + +  +P +++  ++ L   + +   R +AV             Q  ++ + 
Sbjct: 355 EVGGVTVIDDFAHHPTAVRETLAALK--AAYPGRRLVAVFEPRTNSSRRRVFQEAYVSVF 412

Query: 394 EVLSLYNISH-----VWLSGFHV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD 445
                  I                      D     +       +  +   +      GD
Sbjct: 413 AAADRVLIREPEGLEAIPVDERFSVQRLAADLTAAGLPARAFAEVQEIIDQLAVDSRPGD 472

Query: 446 VV--VVKSSNSCGFYRLINLLLEEFPAIQ 472
           VV  +   SN  GF  +   LL      +
Sbjct: 473 VVAIL---SNG-GFDNIHQRLLARLGGTE 497


>gi|145588855|ref|YP_001155452.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047261|gb|ABP33888.1| cyanophycin synthetase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 856

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 64/379 (16%), Positives = 124/379 (32%), Gaps = 47/379 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLAR 155
             ++A+TG+ GKTTT  +++  L+                 +  I + +           
Sbjct: 470 IPVVAVTGTNGKTTTVRLISHLLTETGLRVGMTGTDGVYINHRAIDTGDCSGPKSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           M  DVD  + E      G +R      R  +AV+T I        + I   E++A  K  
Sbjct: 530 MHPDVDAAVLETA--RGGLLREGLGFDRCEVAVVTNIGEGDHLGLNYITSVEDLAILKRV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE---- 268
           I + +  TG   LN  D     +  K     I    +         + +  K        
Sbjct: 588 IVQNVAPTGAAVLNAADPMVAKMGDKCSGRVIFFAQNQHHPVITAHRAKNKKVIYNDGTY 647

Query: 269 -----QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                 S +  +     + +  +G+     +N +  +G    L  D +   + L+ F   
Sbjct: 648 IVASKGSRVMYRFPVSEIPLTQNGVLGFQVENAMAAIGAAWALGLDAEKIARGLNSFEST 707

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                           T+I + Y  NP +M+A  S ++ + P      + + G     G+
Sbjct: 708 ANSVPGRFNQFQHNGATVIAD-YGHNPDAMRALASAITAMKPKQS--HVVISGA----GD 760

Query: 384 LSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG- 432
                  DL  +L      ++ L           G  +  L++ L  +      + + G 
Sbjct: 761 RRDEDIRDLTRILGNS-FDNIILYQDACQRGREDGEVLKLLQEGLVGATKAKQVKEIHGE 819

Query: 433 --LFLFIQSSLVDGDVVVV 449
                   + +  GD+ ++
Sbjct: 820 FLAIDTALNDISAGDICLI 838


>gi|283456398|ref|YP_003360962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           dentium Bd1]
 gi|283103032|gb|ADB10138.1| murD UDP-N-acetylmuramoylalanine--D-glutamate ligase
           [Bifidobacterium dentium Bd1]
          Length = 480

 Score = 41.8 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 110/374 (29%), Gaps = 38/374 (10%)

Query: 97  KLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+        A  I ITG+ GKT+T EM +  L++   T   +     +IG  +
Sbjct: 88  ELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEMLTACGLTAPAV----GNIGKAV 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L     L        A IT IA  HL    GI+  A+ KA
Sbjct: 144 SHAAVDPANDVLCVELSSFQLHFTDSLAL----DGAAITNIADDHLDWHGGIDNYAADKA 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F    K      N DD     L  ++          F   K    Q+           
Sbjct: 200 KVFHRASKAL--VYNADDIRVTELAERAETAEGCRRIGFTLHKPEAGQIGIVDGWIVDMS 257

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +      V     +        T+    +  A    A+                R
Sbjct: 258 GVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQR 317

Query: 332 CALNQGFFTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +  ++ ++         +    A +  + ++   +   + + G + + G 
Sbjct: 318 FTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAK-GS 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---------VHYSETMDGLF 434
             +    D       + I    + G     + DA   S              S  M    
Sbjct: 377 RFERLVAD-----QAHTIKAAVIIGEDQQPMLDAFKASAPQIPLTVIDPADKSTVMARAV 431

Query: 435 LFIQSSLVDGDVVV 448
               +    GDVV+
Sbjct: 432 NAAGAYAESGDVVL 445


>gi|297171249|gb|ADI22256.1| hypothetical protein [uncultured Gemmatimonadales bacterium
           HF0200_36I24]
 gi|297171368|gb|ADI22372.1| hypothetical protein [uncultured nuHF2 cluster bacterium
           HF0500_02A10]
          Length = 352

 Score = 41.8 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 15/105 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSI---APQEAFFAIKGPHYDGHDFILHAVQ 62
           T   L   + G  +G      + GI+     +    P E      G   D   ++     
Sbjct: 9   TLEKLASLVDGRVVGNA-DLHIKGIAT----LAHAKPDEL-----GLLSD-RKYLKGLSN 57

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK 107
             AG ++V+ D+             VDD   AL  L         
Sbjct: 58  SNAGALLVSRDIDPEAIGSPNR-LVVDDPRNALAVLIEHFHPEPD 101


>gi|116253047|ref|YP_768885.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|189029026|sp|Q1ME34|MURC_RHIL3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|115257695|emb|CAK08793.1| putative UDP-N-acetylmuramate--L-alanine ligase [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 81/445 (18%), Positives = 145/445 (32%), Gaps = 66/445 (14%)

Query: 33  DSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI--- 83
           DS ++        E F         GH     A   G A +VVV+T +  S   L     
Sbjct: 41  DSANVQRLRDKGIEVFV--------GHR----AENLGEAEVVVVSTAIKKSNPELIAARE 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V  V  A   LA   R R     IAI G+ GKTTT  ++   L +       I   
Sbjct: 89  KLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGG 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +            + ++ + E   S           +   +AVIT I P HL ++   
Sbjct: 143 IIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPADVAVITNIDPEHLDHYGNF 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + +A  +  E +   G   +  D    + L  +     I    ++G++  AD + +  
Sbjct: 195 DAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKII---TYGENPQADVRFKNV 251

Query: 264 KQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +S  +V+++ +    V           G H   N    + + + L        K 
Sbjct: 252 RIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKG 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK---------AAISVLSQISPHG 367
           L+ F   + R               I + Y  +P  +K             V++   PH 
Sbjct: 312 LASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIKAVLRAARESCKGRVIAVHQPHR 367

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VH 425
             R  ++  +       + S  +          I      G   ++L   +    H    
Sbjct: 368 FSRLASLFEEFAACFNDADSIFLAPVYAAGEDPIE-----GIDSVSLVSRIKSGGHRDAR 422

Query: 426 YSETMDGLFLFIQSSLVDGD-VVVV 449
           +  + + L   +      GD VV++
Sbjct: 423 FLTSAEFLPQMVAEVAKPGDFVVLL 447


>gi|171318232|ref|ZP_02907395.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
 gi|171096576|gb|EDT41470.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MEX-5]
          Length = 199

 Score = 41.8 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E           L ++L    +  V      +      +
Sbjct: 69  ALDLLPMEPIADVHFIQGDFRE-----DDVLRQLEDLLEGRAVDLVI---SDMAPNLSGV 120

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 121 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 173


>gi|218442054|ref|YP_002380383.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. PCC 7424]
 gi|226711905|sp|B7KH28|MURD_CYAP7 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218174782|gb|ACK73515.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cyanothece sp. PCC
           7424]
          Length = 449

 Score = 41.8 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 67/382 (17%), Positives = 124/382 (32%), Gaps = 47/382 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
            +L +A R  +  + + ITG+ GKTTT  ++     +             +IG       
Sbjct: 94  GELELAWRYLNGCSWVGITGTNGKTTTTALIAAIFKAAGLNAP----ACGNIGYAACELA 149

Query: 156 M-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           +     D+ I E+    +         + P I + TT  P HL     ++     KA + 
Sbjct: 150 LTQQSYDWIIAEISSYQIESSA----TLSPKIGIWTTFTPDHLERHKTLDNYYQIKASLL 205

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                         +     L     +    + ++  K K A           + +W+  
Sbjct: 206 SR------CRRQIFNGDDPYLHNIGLSQWKDSYWTSVKGKEALLCDPSKGIYLQDNWIVA 259

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
             +  +   +   +G H  QN+LM +G   +   + D   +A++ F     R +  R   
Sbjct: 260 FGELIAPINLFKMVGEHNQQNLLMAVGAARLADINKDAIAEAMATFSGVPHRLELIRTIA 319

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  I++S   N  + +  +S +       E   I + G   + G+ ++        
Sbjct: 320 GVD---YINDSKATNYDAAQVGLSSV-------EAPVILIAGGQAKKGDDTEWI------ 363

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDV--VVV- 449
            L    ++ V L G         L  S +  Y   ETM+       S   D  V  V++ 
Sbjct: 364 KLIKAKVATVLLIGEAASTFAQRLQESDYYAYEIVETMENAVERSASLATDKGVKIVLLS 423

Query: 450 --KSS---------NSCGFYRL 460
              +S             F  L
Sbjct: 424 PACASFDQYQSFEHRGDHFREL 445


>gi|296104001|ref|YP_003614147.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058460|gb|ADF63198.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 422

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+   L+     +   + +   G      +  L          ++   +    +     
Sbjct: 336 KDIGGTLACMESVVDSWYCAPLEGPRGATAEQLLEHLGKGAIYNSVAQAWQAAMADAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|254470506|ref|ZP_05083910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
 gi|211960817|gb|EEA96013.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Pseudovibrio sp.
           JE062]
          Length = 466

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 55/331 (16%), Positives = 98/331 (29%), Gaps = 32/331 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  +++  L               +IG P+       +    + 
Sbjct: 112 PEAPFVAITGTNGKSTTTALISHVLKECGMDVQMG----GNIGRPVLDLEGFSEDRVYVV 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     L   + P I V+  ++P HL     +E  AS K  +    +      +
Sbjct: 168 EVSSYQID----LAPSLAPDIGVMMNLSPDHLDRHGNMENYASIKERLV---KAARLAVV 220

Query: 226 NYDDSFFELLKAKSHALGIKTI-YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
             DD F   +  +    G      S  +           K        +V +   S    
Sbjct: 221 GVDDEFSAAIAQRRAESGEPIELISCHEPVEFGVYAADGKVIEVFDEEQVVVADLSSSNT 280

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
             G       +  + +     L  D      A            R +     G    +++
Sbjct: 281 LRGSHNGQNASAAVAVCAALGLELDEIAGALATFPGLA-----HRLKLVAEAGKVLFVND 335

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   N  +   A++   +I     GR  A        G  S   +           I   
Sbjct: 336 SKATNAEAAAHALAAFDRIYWIAGGRPKA-------GGISSLKAYFP--------KIVKA 380

Query: 405 WLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
           +L G      +  L  S+  H   ++D    
Sbjct: 381 YLIGEAAEEFEQELSGSVEAHKFGSLDMAVE 411


>gi|313896106|ref|ZP_07829660.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975531|gb|EFR40992.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 459

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 96/336 (28%), Gaps = 41/336 (12%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVPL    + +  +  I     S+  E     H+   HIA    + P H+     +E 
Sbjct: 148 NIGVPLIDEALRIPAEGAIAAEISSYQMEATQYFHV---HIAAELNVTPDHIVRHGSMEV 204

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             + K ++F        + LN DD     + A++             ++ A         
Sbjct: 205 YQAMKEKLFAWQTPDDFLVLNDDDPHTRGMAARAKGRVCLFSRRHALAEGAYIDGGMIVI 264

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    E+              G H  +N L       +     +     L  F   E 
Sbjct: 265 VWDGVRHELVP-----IAELGIRGGHNVENALAAAASAFLAGVTPEEMRPVLRSFRGVEH 319

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R           ++S   N  +   A+           G  + + G     G+  
Sbjct: 320 RIEPVREIGGVP---YYNDSKATNTDAAIKALEAFD-------GHIVLIAG-----GDDK 364

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSE-TMDGLFLFIQSS 440
            +   D   ++       + L G        A   +     H+H     M+       + 
Sbjct: 365 MTDLTDFMRLVRERT-DELILVGAAAERFAAAAADAGIAPAHIHRVGYDMEAAVHLAHTL 423

Query: 441 LVDGDVVVV---KSS---------NSCGFYRLINLL 464
                 V++    +S             F R++N L
Sbjct: 424 ARPPQTVLLSPACASFDMYGGYEERGRDFKRIVNGL 459


>gi|297544236|ref|YP_003676538.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842011|gb|ADH60527.1| FolC bifunctional protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 427

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 14/92 (15%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLF 436
           G L       + +++       +  +         A          +V   E ++    +
Sbjct: 335 GMLKDKDTQKMLDIIVPEA-DIIITTTPISERAYKASELAQKIDKKNVIPIENIEKAVKY 393

Query: 437 IQSSLVDGDVVVVKSS-------NSCGFYRLI 461
                 + D+V+   S        S    ++I
Sbjct: 394 ALDIAKEEDMVLFCGSLYMIGYVRSM-LKKVI 424


>gi|190892582|ref|YP_001979124.1| UDP-N-acetylmuramate--alanine ligase [Rhizobium etli CIAT 652]
 gi|190697861|gb|ACE91946.1| UDP-N-acetylmuramate--alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 471

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 77/420 (18%), Positives = 139/420 (33%), Gaps = 53/420 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VVV+T +  S   L      +  V  V  A   LA   R R   
Sbjct: 58  GHR----AENLGDAEVVVVSTAIKKSNPELIAAREKLLPV--VRRA-EMLAELMRFR--- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L +       I     +            + ++ + E  
Sbjct: 108 NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGGIIN---AYGTNARMGEGEWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   +AVIT I P HL ++   + + +A  +  E +   G   +  D
Sbjct: 165 ES-----DGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV---- 284
               + L  +     I    ++G++  AD + +  +    +S  +V+++ +    V    
Sbjct: 220 HPEVQSLVGRIEDRKII---TYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVTELK 276

Query: 285 ---HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G H   N    + + + L        K L+ F   + R               
Sbjct: 277 GLVMPMPGRHNISNATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTGEWNG----VQ 332

Query: 342 IDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           I + Y  +P  +KA +           ++   PH   R  ++  +       + S  +  
Sbjct: 333 IFDDYGHHPVEIKAVLRAAREACKGRIIAVHQPHRYSRLASLFEEFAACFNDADSIFLAP 392

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
                   I      G    +L   +    H    +  + + L   +      GD VV++
Sbjct: 393 VYAAGEDAIE-----GVDSTSLVSRIKSGGHRDARFLSSAELLPQMVAEVAKPGDFVVLL 447


>gi|254363249|ref|ZP_04979297.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
 gi|153095146|gb|EDN75693.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           PHL213]
          Length = 454

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 93/319 (29%), Gaps = 31/319 (9%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  F + E     S   + R       P   +I  +   H   F  ++ I      +   
Sbjct: 153 NSPFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRT 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + ++G I     D   +             + S+ + +    Q   + +       + ++
Sbjct: 213 MPQSGCILSAIADQNVQDTLK---------MGSYSQLQFIGEQNEWFAKPLNADCSQFEV 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               ++            NM   L  ++           A           +R       
Sbjct: 264 FHLGVKQGEVHWSIIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEV 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI           G+   +L  + E    +        ++A
Sbjct: 324 NGITVYDDFAHH-----PTAIEATIDALRGKVGKNQRILA-VLEPRSNTMKMGVHKDEIA 377

Query: 394 EVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L  ++   V++    ++A     + + L +    ++S  +D L   +       D ++
Sbjct: 378 PSL--HDAEAVFVYQPDIIAWSVSEITNVLSQ--PAYWSANIDDLVDLVVKEAKPTDHIL 433

Query: 449 VKSSNSCGFYRLINLLLEE 467
           V  SN   F  +   LL +
Sbjct: 434 V-MSNG-AFGGIHQKLLAK 450


>gi|254673379|emb|CBA08659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Neisseria
           meningitidis alpha275]
          Length = 260

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 58/176 (32%), Gaps = 16/176 (9%)

Query: 48  GPHYDGHDF----ILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALN--KLAV 100
           G  +DG  F    +  A+  G   L +            +       +    L   +L  
Sbjct: 47  GKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIEAFKQ----NGGRVLGDIELLA 102

Query: 101 AARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
               R    +IAITGS GKTT   ++   L         I        +     R     
Sbjct: 103 DIVNRRGDKVIAITGSNGKTTVTSLVG-YLCIKCGLDTVIAGNIGTPVLEAEWQREGKKA 161

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + EL    L         +RP  A +  I+  HL  +  + + A  KA+IF G
Sbjct: 162 DVWVLELSSFQLENTE----SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFRG 213


>gi|114319765|ref|YP_741448.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226159|gb|ABI55958.1| UDP-N-acetylmuramate [Alkalilimnicola ehrlichii MLHE-1]
          Length = 453

 Score = 41.8 bits (96), Expect = 0.28,   Method: Composition-based stats.
 Identities = 71/366 (19%), Positives = 116/366 (31%), Gaps = 35/366 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFEL 167
           ++A++G+ GKTTT  +L   L                 GVP    R     D  F + E 
Sbjct: 105 VLAVSGTHGKTTTASLLAWILEYAGLNP-----GFLVGGVPTNFGRSARLGDGPFFVIEA 159

Query: 168 GM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
               S   + R      RP   VI  I   H   F  +  I      +   +   G I  
Sbjct: 160 DEYDSAFFDKRSKFIHFRPRTLVIHNIEYDHADIFPDLAAIQRQFHHLVRTVPGNGLIIA 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
           N D      +               G   + D++        +   +        +    
Sbjct: 220 NGDQ---ANVAETLGQGCWTPTLRLGTGPDCDWRY---DLNGQGEMVLRGGDATPLTARP 273

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
              G H A N    L     +   + T + AL+ F   + R +    A     +    + 
Sbjct: 274 PLPGLHNAANCAAALLAARHVGVPLSTGLDALAGFRGVKRRLELRGEAGGVRVY----DD 329

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISH 403
           +  +P +++A +  +      G GR +AVL    E    +     H +          + 
Sbjct: 330 FAHHPTAIRATLEAMRP----GPGRLLAVL----EPRSNTMRMGIHRERLAAALAPADAV 381

Query: 404 VWLSGFHVLA-LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GF-Y 458
             L G  +   + DAL   +     ++ +  L   I+     GD VVV  SN    G   
Sbjct: 382 FALQGKGLEWSVADALAGLTPPAEVAQDVPALVQRIRQQARPGDRVVV-MSNGAFDGLHG 440

Query: 459 RLINLL 464
           RL+  L
Sbjct: 441 RLLAAL 446


>gi|218561393|ref|YP_002394306.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
 gi|218368162|emb|CAR05971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Escherichia coli S88]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +    D ++V  SN  GF    
Sbjct: 385 FLLQPAHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|114777351|ref|ZP_01452348.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
 gi|114552133|gb|EAU54635.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Mariprofundus ferrooxydans
           PV-1]
          Length = 462

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 96/365 (26%), Gaps = 24/365 (6%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           + + G+ GKTTT  +L   L     +    G     I                + E    
Sbjct: 107 VVVAGTHGKTTTSSLLAWVLDRADLS---PGFMIGGIPEDFGTGARTGGGPHFVLEGDEY 163

Query: 171 HLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                              ++  +   H   F  +E I +    +   +   G+I +N D
Sbjct: 164 DTAFFDKRSKFLHYHARTLILNNLEYDHADIFPDLEAIQAQFHHLIRTVPAAGSIVVNGD 223

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D   + + A+     +     +G     D +        + S   +   G  +  V  G+
Sbjct: 224 DDNLDYVLARGCWTPLVRFARYG---GRDAEWHWQPLSDDGSRFRLYQHGDEVMEVSWGM 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKA--------LSVFHPKEGRGKRYRCALNQGFFT 340
                      +   +         I A                  G            T
Sbjct: 281 IGLHQVANACAVAATASRLGVSSADIAAAFASFGGIRRRMTLVGEVGGIRIFDDFAHHPT 340

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I     A  A+MK    +   + P     R  +          +    + +       N
Sbjct: 341 AISGVVAAARAAMKGRGRLWVVVEPRSNTMRSRIHQQALPACFAAADQVVFVPASDRNLN 400

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRL 460
            S V        A+        H       + +   I+S   +GD V++  SN  GF  +
Sbjct: 401 ASDVLDVAEVCRAI------GPHAVVLADAEAIIAHIRSHASEGDDVLIL-SNG-GFDGI 452

Query: 461 INLLL 465
              LL
Sbjct: 453 HQRLL 457


>gi|238018914|ref|ZP_04599340.1| hypothetical protein VEIDISOL_00774 [Veillonella dispar ATCC 17748]
 gi|237864398|gb|EEP65688.1| hypothetical protein VEIDISOL_00774 [Veillonella dispar ATCC 17748]
          Length = 435

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 89/292 (30%), Gaps = 10/292 (3%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D+ + E+    LG +   T++V P ++VIT +   H +      +     A    G+ K+
Sbjct: 137 DYAVVEV---GLGGLLDSTNIVTPKVSVITNVTIDHQAYCG---DTVEEIARHKAGIIKS 190

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               +         +           +Y+F K    D +         Q           
Sbjct: 191 KVPVVTAAQDAPLRIIEDVAKEKHAKVYAFNKDFGIDSRS---AVTGGQMITVSTNDAAP 247

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
             +     G H + N+   L  V +L  +  +  +                        T
Sbjct: 248 AMLFTTMAGIHQSVNLACALMAVRLLMKEDKSISEETMREGFARTTWAGRFEVKRGLDRT 307

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            I +  +    +   +++         +   +A+L D  +   + +        ++    
Sbjct: 308 FIFDGAHNAAGAESFSMTYAELFKDAPKTIVMAILKDKNQDAIIREVVKAGDTVLVVPAP 367

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                +    V  ++  +P+++    ++++            +GD++ V  S
Sbjct: 368 TDRTEVPEVLVEKIRHIVPKAV-AQTADSVKDALALAYKHTKNGDIIAVCGS 418


>gi|282854260|ref|ZP_06263597.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J139]
 gi|282583713|gb|EFB89093.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J139]
 gi|314923247|gb|EFS87078.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL001PA1]
 gi|314980970|gb|EFT25064.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA3]
 gi|315091701|gb|EFT63677.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA4]
 gi|315103161|gb|EFT75137.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA2]
          Length = 498

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 78/301 (25%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDDLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 ASGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|254469848|ref|ZP_05083253.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Pseudovibrio sp. JE062]
 gi|211961683|gb|EEA96878.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Pseudovibrio sp. JE062]
          Length = 345

 Score = 41.4 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 20/114 (17%)

Query: 1   MNPLW-------TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHY 51
           M+P++       T   + +      +    +  ++G++ +D     P    F        
Sbjct: 1   MSPVFFPEAQTITVKQVAEWAGAEIVRGDRELTISGVAPLD--EGVPGTLVFI------- 51

Query: 52  DGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK-LAVAARL 104
           D   ++       A   +V+   +  +    +P+    +   +L K LA     
Sbjct: 52  DNPKYLDQLEDTKATACLVSKKHLDKVPEGVVPLLS-KEPYRSLAKVLAELYPD 104


>gi|325108984|ref|YP_004270052.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
 gi|324969252|gb|ADY60030.1| FolC bifunctional protein [Planctomyces brasiliensis DSM 5305]
          Length = 454

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 101/374 (27%), Gaps = 37/374 (9%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
           S+A ++A+T +V       +        +        +     +         +VD  + 
Sbjct: 102 SEADVVALTQTV-------LDAADRLQAEDASLAPTFFECINAMAWMHF-CNQNVDLAVL 153

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    LG     T+L +P +  IT+I+  H           + +              +
Sbjct: 154 EV---GLGGRLDSTNLCKPLVTAITSISFDHTRILGSTLAAIAGEKAGIIKPGVPVICGV 210

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
              ++   +      A               D       +  + S        K      
Sbjct: 211 LNPEAQAVVHAKAEEAKAPLKQLERDVLVQTDAAWSLAHREQQVSLNCDGETWKLRLPFP 270

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +    A   +  +  ++     V  +  A +            R  +      LI +S
Sbjct: 271 GSVYADNAAIAVACVHELASRGFPVPNSTIAAAARDIVLPL----RFEILDESPVLIADS 326

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
            +   +      +V   +        +AV          S   H  +   L    +  V 
Sbjct: 327 AHNAASIRALIKAVREHLPSQPVTVMLAV---------SSDKDHAAICRELK--GVERVI 375

Query: 406 L---SGFHVLALKDALPRSIHVHY------SETMDGLFLFIQSSLVDGDVVVVKSSNSCG 456
           +    G       + L  +   H+      +E         +S + +GDV++   S    
Sbjct: 376 VTRYVGTARAVAPEQLAETAREHFGGQVLLAENPAAALEMARSMVGNGDVLLATGSLFFA 435

Query: 457 FYRLINLLLEEFPA 470
               I  ++ E PA
Sbjct: 436 AE--IRKIVSESPA 447


>gi|296112510|ref|YP_003626448.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|295920204|gb|ADG60555.1| UDP-N-acetylmuramate-alanine ligase MurC [Moraxella catarrhalis
           RH4]
 gi|326564127|gb|EGE14365.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           46P47B1]
 gi|326564829|gb|EGE15037.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           12P80B1]
 gi|326566496|gb|EGE16643.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           103P14B1]
 gi|326568016|gb|EGE18108.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC7]
 gi|326570680|gb|EGE20714.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC1]
 gi|326571236|gb|EGE21259.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis BC8]
 gi|326573081|gb|EGE23054.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577221|gb|EGE27114.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis
           101P30B1]
 gi|326577784|gb|EGE27656.1| UDP-N-acetylmuramate--L-alanine ligase [Moraxella catarrhalis O35E]
          Length = 486

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 62/408 (15%), Positives = 126/408 (30%), Gaps = 50/408 (12%)

Query: 65  AGLVVVNTDMVASIGSLSIP---VFGVDDVLGA--LNKLAVAARLRSKATIIAITGSVGK 119
           A +VVV++ +      +         V  V  A  L +L            IA+ G+ GK
Sbjct: 83  ADVVVVSSAIDRQNPEIRAALKAHIPV--VRRADMLGELMRYRHG------IAVAGAHGK 134

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  +LT+ L+        +     +               + + E   S         
Sbjct: 135 TTTTSLLTMMLTEAGLDPTYVIGGKLN---ASGKNAALGASRYLVAEADES-----DASF 186

Query: 180 HLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
             +RP   V+T I   H+  +    +++  A  +    +   G   L  DD     +   
Sbjct: 187 LSLRPMACVVTNIDEDHMETYEGSFDKLKQAYVQFLHNMPFYGLAVLCGDDKELYAMIDD 246

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
                I    ++G  K+ D Q         ++   V  + K    +  +  G H   N L
Sbjct: 247 IARPVI----TYGLEKHNDVQAVDVIADGTKTHFTVLRKDKKPLPITLNIPGIHNVYNAL 302

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRY--RCALNQGFFTLIDESYNANPASMKA 355
             + + +          +A+  F     R +        +     ++ + Y  +P  +  
Sbjct: 303 GAITMATDEGVSDKAICQAVEKFAGVGRRFENNGSYPLTDGSGDVVLIDDYGHHPTEIAM 362

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQS-----FHIDLAEVLSLYNISHVWLSGFH 410
            I    Q  P         L  M +    S++       +++   +    +  V+ +G  
Sbjct: 363 TIKAARQSYPDRR------LVMMFQPHRYSRTRDCFSEFVNVLSQVDKLILLDVYSAGEE 416

Query: 411 ------VLALKDALPRSIHVH----YSETMDGLFLFIQSSLVDGDVVV 448
                    L  +L     V          + +   ++ +L   D+++
Sbjct: 417 LIKGATSNDLARSLRERGQVEPIVLNVNDKEQITQVLKITLNANDLLM 464


>gi|333027607|ref|ZP_08455671.1| putative UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Streptomyces sp. Tu6071]
 gi|332747459|gb|EGJ77900.1| putative UDP-N-acetylmuramoylalanine/D-glutamate ligase
           [Streptomyces sp. Tu6071]
          Length = 451

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 14/125 (11%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
                   +      +++   NP S   A+S             + + G     G+ ++ 
Sbjct: 312 HVLEFVAERSGIAFYNDAKATNPYSTLHAVSAFEDRP------LVLIAG-----GKDTKD 360

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDG 444
                    ++  + H+ L G    A+  AL           +E         ++    G
Sbjct: 361 ADFTALAAPTMRRVRHLVLFGETAGAIHRALTDGGLDLPTTVTEDFTDATATARTLARPG 420

Query: 445 DVVVV 449
           D V+ 
Sbjct: 421 DAVLF 425


>gi|314967014|gb|EFT11113.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL082PA2]
 gi|315093065|gb|EFT65041.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL060PA1]
 gi|327327834|gb|EGE69610.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL103PA1]
          Length = 498

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 78/301 (25%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDDLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAIGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
               T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 ASGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|291457563|ref|ZP_06596953.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
 gi|291380616|gb|EFE88134.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           breve DSM 20213]
          Length = 481

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 73/373 (19%), Positives = 115/373 (30%), Gaps = 41/373 (10%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMP 157
           A  AR    A  I ITG+ GKT+T EM +  L++            +  + + L+     
Sbjct: 92  ADNARTGKPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATN 151

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D    EL    L         +    A IT IA  HL    G E  A+ K+++F   
Sbjct: 152 PKHDVLCVELSSFQLHFTD----SLELDCAAITNIADDHLDWHGGRENYAADKSKVFR-- 205

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQS 270
                I  N  D+    L   +          F       G+   AD  +      +   
Sbjct: 206 AARRVIAYNAQDAKVSELAQAAPVAAGCRKVGFTLNEPEAGQIGIADGWIVDRSGVAGGK 265

Query: 271 WMEVQLQGKSMEVVHHGI-----GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP-KE 324
             E        +  H          H+  + L  L +V  L AD +TA++AL  F P   
Sbjct: 266 VGEPIKLAAIADFTHLMEPDGSLYPHLVADALTALVLVLGLGADRETALEALQTFKPGGH 325

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    +N G    +D+S   N  +        + +S       + + G + +    
Sbjct: 326 RIETVAEARVNGGVIRFVDDSKATNGHAAN------ASLSSFSAKSVVWIAGGLAKGSRF 379

Query: 385 SQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFL 435
                         + I    + G     + +A       I V   +       MD    
Sbjct: 380 EDLVSNQ------AHTIKAAVIIGKDQQPMIEAFRSQAPDIPVTVIDPQDNDTVMDRAVA 433

Query: 436 FIQSSLVDGDVVV 448
                   GDVV+
Sbjct: 434 ACGDYAAAGDVVL 446


>gi|306820085|ref|ZP_07453733.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551863|gb|EFM39806.1| tetrahydrofolate synthase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 449

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 111/314 (35%), Gaps = 28/314 (8%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                  +VDF + E+    LG +   T+++ P ++VIT+++  H++     E    A+ 
Sbjct: 136 YYYFYKQNVDFAVIEV---GLGGLTDSTNVITPILSVITSVSYDHMAVLGN-EISLIARQ 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE--- 268
           +     +    I  N       ++K          I +  + +    +  K    ++   
Sbjct: 192 KAGIIKKDVPVILYNQRAEVMNVIKKVCVEKNSPLIIANSEIREYTDEEVKEIFNTDLVK 251

Query: 269 ---QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
              + +  ++ +  S ++  + +G H  +N  + + I   L +      K+  +   +  
Sbjct: 252 NSPRQYFNIRTKNDSYDIALNLLGVHQMKNTDVVINIAETLQSQGIEIKKSSILSALENV 311

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                   +      ++D ++N +      AI  L+Q        +  +L      G L 
Sbjct: 312 TWIGRMEIVKANPIVMLDGAHNID------AIKQLAQSIKKYFSYKKLILIT----GILK 361

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHV------LALKDALPR-SIHVHYSETMDGLFLFIQ 438
                +++E+L+  +   +              AL ++L + +  V  S+          
Sbjct: 362 DKQVDEMSEILAKLS-DKIIAVEVDSVRRTSKDALIESLKKYNKDVEGSDDYKEALDKAL 420

Query: 439 SSLVDGDVVVVKSS 452
           S     D++++  S
Sbjct: 421 SYADKDDMILICGS 434


>gi|119775284|ref|YP_928024.1| FolC bifunctional protein [Shewanella amazonensis SB2B]
 gi|119767784|gb|ABM00355.1| FolC bifunctional protein [Shewanella amazonensis SB2B]
          Length = 421

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS-HVWLS----GFHVLALKDALPR 420
              G+R+  L  M +        + ++  ++       ++       G     L  ALP 
Sbjct: 324 RWPGKRVLALCGMLK-----DKDYREVLNIMHPAVADWYLVTLEGERGTRASELAAALPA 378

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               H  +T++     I     +GDVV+V  S
Sbjct: 379 GAKAHTFDTIEQAREAILKDAGEGDVVIVFGS 410


>gi|238060043|ref|ZP_04604752.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
 gi|237881854|gb|EEP70682.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Micromonospora sp.
           ATCC 39149]
          Length = 452

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 67/375 (17%), Positives = 122/375 (32%), Gaps = 49/375 (13%)

Query: 88  VDDVLGALNKL----------AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
           V +    L +L          +           + +TGS GK+TT  +++  L++     
Sbjct: 81  VPNTHPWLVELRGRGVTVTQGSALWMADHARRTVGVTGSKGKSTTSSLISHLLTA----V 136

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
                +  +IGVPL       D D  + EL                P +AV+T + P HL
Sbjct: 137 DRPNVFGGNIGVPLLDL---PDADLYVLELSSYQ-----CADLTDSPRVAVVTALFPEHL 188

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
               G  E    K  +     +T    +N  D           A+   +  +   +   D
Sbjct: 189 DAHGGEREYYRDKLNLLAHGPQTI--VVNGADPRLAAELGDRPAVRAGSPDTTHVAPGPD 246

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                           +  +      V   +G H   N+ + L +++ L  DV     AL
Sbjct: 247 GTPW----------FHLGDRPLFPRAVLPLVGRHNEGNLCVALAVLAALGVDVVARADAL 296

Query: 318 SVFH-PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           +V     +G   R     +    T +D++   +P +   AI                ++G
Sbjct: 297 AVAVAGFQGLAHRLTEIADPSGLTFVDDTLATSPYAAMHAIDAYE------GRPVTVIVG 350

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKDALPRSIHVHYSETMDGLF 434
                G      +  L E L+   I+ + +  SG  ++A    LPR +     + +    
Sbjct: 351 -----GADRGLDYAPLREHLAEREITVLGIPDSGQRIVATLAGLPR-VRAEVVDDLVAAV 404

Query: 435 LFIQSSLVDGDVVVV 449
              +       VV++
Sbjct: 405 RRARELTPADGVVLL 419


>gi|83720203|ref|YP_441664.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis E264]
 gi|167618579|ref|ZP_02387210.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis Bt4]
 gi|257137833|ref|ZP_05586095.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           thailandensis E264]
 gi|122063238|sp|Q2SZI5|MURD_BURTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|83654028|gb|ABC38091.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           thailandensis E264]
          Length = 504

 Score = 41.4 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  ++ +    V L G    AL++AL    + +    T++       + 
Sbjct: 402 GDGKGQDFEPLAAPVARW-CRAVMLIGRDAPALREALADTGVPLADHATLESAVRAAGAL 460

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 461 AQPGDAVLL 469


>gi|258542971|ref|YP_003188404.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256634049|dbj|BAI00025.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256637109|dbj|BAI03078.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256640161|dbj|BAI06123.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256643218|dbj|BAI09173.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256646273|dbj|BAI12221.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256649326|dbj|BAI15267.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256652312|dbj|BAI18246.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256655370|dbj|BAI21297.1| UDP-N-acetylmuramate--L-alanine ligase [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 477

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 80/423 (18%), Positives = 134/423 (31%), Gaps = 64/423 (15%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A +VV++T +      +      +  V  V  A   LA   RLR   
Sbjct: 59  GHK----AENLGDAQVVVISTAVKRDNPEVVAARAKLIPV--VRRA-EMLAELMRLRWS- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  ++   L + K     I                    D+ + E  
Sbjct: 111 --VAVGGTHGKTTTTSLVAAVLEAAKLDPTVINGGIIE---AYGTNTRMGKGDWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I+V+T + P HL ++   E + +A  +    +   G   L  D
Sbjct: 166 ES-----DGSFLRLPSVISVVTNMDPEHLDHWGSPEAMEAAYDQFVSNVPFYGFAVLCID 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSM 281
               + +  +   L    I ++G S  AD +  K              +    +   K+ 
Sbjct: 221 HPAVQQMIPR---LSDHRIVTYGFSPQADVRAEKLITDKLGATFEVTLTDRVSRRTRKAG 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H  QN L  + + + +    D     L+ F   + R  R   A        
Sbjct: 278 PFRLPMLGSHNVQNALAAIAVATEMDISDDVIRSGLASFRGVKRRFTRTGEAGG----IT 333

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A            V++ + PH   R   +  D C             
Sbjct: 334 VIDDYGHHPVEIAAVLKAARQAGANHVIAVMQPHRYSRLKILFSDFCAC----------- 382

Query: 393 AEVLSLYNISHVWLSGFHV------LALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDG 444
                   +S V+ +G           L + L    H       + D L   I +    G
Sbjct: 383 MNDADTVIVSDVYAAGEDPLPDASRDKLIEGLRERGHRSVVPLSSPDHLAEMINAIAKPG 442

Query: 445 DVV 447
           D V
Sbjct: 443 DYV 445


>gi|307294498|ref|ZP_07574340.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
 gi|306878972|gb|EFN10190.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Sphingobium
           chlorophenolicum L-1]
          Length = 440

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 61/404 (15%), Positives = 117/404 (28%), Gaps = 72/404 (17%)

Query: 63  KGAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
           KG   VVV+  +  +   +        +P+ G  D+   L  LA  A  +    ++ ITG
Sbjct: 64  KGLEGVVVSPGVPLNKHPIAMHARLAGVPIIG--DIE--LFALARPALPKH--RVVGITG 117

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GK+TT  ++   + +             +IG+P+       +    + EL    +   
Sbjct: 118 TNGKSTTTALVHHIIETAGI----PTRMGGNIGLPILGQEPLPEGGVYVLELSSYQID-- 171

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             LT  +   +AV+  I P HL  ++G E   ++KA +FE         +  +D     +
Sbjct: 172 --LTQSLDCDVAVLLNITPDHLDRYNGFEGYVASKARLFEMQSVDHVAVIATEDEPSRSI 229

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                                        +      +EV+                   N
Sbjct: 230 FENLR----------------------HSREGGNDVVEVKSSDIDPAAQARWPALQGPHN 267

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                  +++  A                    R +          +++S   N AS   
Sbjct: 268 AQNAAVAIAVAQALGIDEAIIEQGLQSYASLPHRMQRVRELNGVLYVNDSKATNAASTAP 327

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV----------W 405
           A++    +                   +  +  H  +  +    N+             +
Sbjct: 328 ALAAYPPM-------------------DGRKRLHWIVGGLAKTDNLDECAPWFGNVAQAY 368

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             G       D L   + V  SE +             GDVV++
Sbjct: 369 TIGEAGHMFADLLRPHMAVDDSEMLSAAVRRAARVAQPGDVVLL 412


>gi|284045224|ref|YP_003395564.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Conexibacter woesei
           DSM 14684]
 gi|283949445|gb|ADB52189.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Conexibacter woesei
           DSM 14684]
          Length = 442

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 19/114 (16%)

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL-PRS 421
           +  +  G    + G     G         LA +++    + V+L G     +  AL    
Sbjct: 334 LRSYAPGTVHLIAG-----GVPKAQDFAPLAPLVAER-CAAVYLIGEGAGEIGAALASSG 387

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCGFYRLINL 463
             +H    M+       ++   G+VV++    +S             F RL+  
Sbjct: 388 TPLHDVGDMERAVAAASAAARPGEVVLLSPACASFDQYPNFEARGDHFRRLVEE 441


>gi|92114311|ref|YP_574239.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
 gi|122419689|sp|Q1QVG8|MURC_CHRSD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|91797401|gb|ABE59540.1| UDP-N-acetylmuramate--L-alanine ligase [Chromohalobacter salexigens
           DSM 3043]
          Length = 488

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 134/412 (32%), Gaps = 52/412 (12%)

Query: 62  QKGAGLVVVNTDMVASIGSLS------IPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
             GA ++VV+T +      +       IPV     V  A   LA   R R     IA+ G
Sbjct: 79  AHGADVLVVSTAVDLENPEIRWAREHRIPV-----VRRA-EMLAELMRFRHG---IAVAG 129

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           + GKTTT  + +  L+        +                  + D+ + E   S    +
Sbjct: 130 THGKTTTTSLTSTLLAEGGLDPTFVIGGKL---TSAGTNARLGEGDYLVAEADESDASFL 186

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                 ++P ++++T I   H++ +      +     E    L   G   L  DD     
Sbjct: 187 H-----LQPMVSIVTNIDADHMATYAGDFARLKDTFLEFLHNLPFYGLAVLCLDDDNVRG 241

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM--EVVHHGIGYHM 292
           L  +          ++G +++AD++LR + Q   +     +        E+     G H 
Sbjct: 242 LLPRVQRQ----FVTYGFAEDADYRLRDFVQRGGEVQFTAERPPGMAPLEIRLGMPGRHN 297

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPK--EGRGKRYRCALNQGFFTLIDESYNANP 350
           A N L  + + S    D     + L  F       +   +  A       ++ + Y  +P
Sbjct: 298 ALNALAAIAVASDAGVDDAAIQQGLLHFAGVGRRFQVHGHYPAPGGEGDVMLVDDYGHHP 357

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
             ++  I  +    P        V+         ++  + D   VL    +  + L    
Sbjct: 358 REVEMVIDAVRAGWPER----RLVMLYQPHRYSRTRDLYEDFVRVL--SGVDTLLLLDVY 411

Query: 408 --------GFHVLALKDALPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVV 449
                   G     L  ++ +   V   + E+   L   +   L   D +++
Sbjct: 412 SAGESSIPGAEGRTLAGSIRQRGQVDPIFVESKQELPALLSRVLRPDD-ILI 462


>gi|209921729|ref|YP_002295813.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
 gi|209914988|dbj|BAG80062.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Escherichia coli SE11]
          Length = 457

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 62/375 (16%), Positives = 114/375 (30%), Gaps = 34/375 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M        +  Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGM--ATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I    +
Sbjct: 163 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRIIWPEN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHG 287
           D   +              +S  +        +  K  ++ S  EV     K  EV    
Sbjct: 223 DINLK-------QTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSL 275

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
           +G H   N LM +     +      A  A           +R      +     + + + 
Sbjct: 276 VGEHNMHNGLMAIAAARHVGVAPADAANA----LGSFINARRRLELRGEANGVTVYDDFA 331

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHV 404
            +P ++   ++ L+ +     G    +   + E    +        DLA  L       V
Sbjct: 332 HHPTAI---LATLAALRGKVGGTARII--AVLEPRSNTMKMGICKDDLAPSLGRA--DEV 384

Query: 405 WLSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY--- 458
           +L           + A       H+S  +D L   +  +    D ++V  SN  GF    
Sbjct: 385 FLLQPTHIPWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPSDHILV-MSNG-GFGGIH 442

Query: 459 -RLINLLLEEFPAIQ 472
            +L++ L ++  A Q
Sbjct: 443 QKLLDGLAKKAEAAQ 457


>gi|168334047|ref|ZP_02692266.1| UDP-N-acetylmuramate--L-alanine ligase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 438

 Score = 41.4 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 129/387 (33%), Gaps = 40/387 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L            I I G+ GKTTT  ML      +  T          I   + 
Sbjct: 79  EFLGDLMATY--EFP---ICIAGTHGKTTTTSMLANI---LLHTNNNPTITVGGIVDSIG 130

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 D  + + E    H   + F      P + VI  I   H+  F  +++I  +  E
Sbjct: 131 GNIHIGDTKYFLTEACEYHNSFLDFN-----PMVGVILNIEEDHMDFFKDLDDIKHSFTE 185

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ--S 270
               + K G + +               A     I +FG SK AD+  +     +    S
Sbjct: 186 FASLIPKQGLLVIEETALQNTPAIKNIAAP----IETFGLSKTADWSAQNISFDANACPS 241

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +           +     G H   N L  + +   L   V    K L  F   + R +  
Sbjct: 242 FDVYYKNEFVFHIAIALAGTHNVLNTLSAIAVCRFLDIPVAEISKDLIHFSGAKRRFEM- 300

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                +    L+ + Y  +P+ +KA ++ +++           V          +++F  
Sbjct: 301 ---RGKIHDILLIDDYAHHPSEIKATLNTVAKYPHKN---LYVVFQPHTY--SRTKTFLN 352

Query: 391 DLAEVLSLYN---ISHVWLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSS 440
              + LS Y    ++ ++ +        H   L   L  +  +  Y E+ D +  ++ ++
Sbjct: 353 GFVDALSTYGQIIVTDIYAARETNPGDIHSRDLVKLLQNKGTNSIYIESFDEISDYLLTT 412

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
              GD+++     +    ++I+ LL +
Sbjct: 413 TEPGDIIMTMG--AGNVNQIIDTLLGK 437


>gi|332527089|ref|ZP_08403169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rubrivivax
           benzoatilyticus JA2]
 gi|332111520|gb|EGJ11502.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rubrivivax
           benzoatilyticus JA2]
          Length = 499

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 92/316 (29%), Gaps = 37/316 (11%)

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           R+    +  + EL    L  +        P  A +  +   HL     +E  A+AKA +F
Sbjct: 166 RLDELPEVWVLELSSFQLDGVS----GFEPAAAAVLNVTQDHLDWHGSMEAYAAAKARVF 221

Query: 215 EGLEKTGTIF--------------LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
                                       +        +      +    +G         
Sbjct: 222 GRDAVMVINRDDPLVEAMVPPPPPAKGRNKPVGRSVQRFGLDAPRRPGDWGLVVENGMAW 281

Query: 261 RKWKQCSEQS-------WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
                 ++++         E+ LQ           G H A N L  L + + +   + + 
Sbjct: 282 LVRALPADETVKLRRDEDHEIHLQRLMPADALRIRGRHNAANALAALALATAIGCPLSSL 341

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
           +  L  +        R +   N G     D+S   N  +  AA+  L   +     R + 
Sbjct: 342 LHGLRDYAG---EPHRVQWIGNVGEVEAFDDSKGTNVGATVAALDGLG--ADKAPARLVV 396

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LG   + G+        LA          V   G    A++  +   +   ++ T++  
Sbjct: 397 ILGGDGK-GQDFAPLAAPLARWARA-----VATIGRDAPAIEPHVRGPVLARHA-TLEAA 449

Query: 434 FLFIQSSLVDGDVVVV 449
             +       GD V++
Sbjct: 450 VAWCFEQAQPGDAVLL 465


>gi|313893085|ref|ZP_07826662.1| bifunctional protein FolC [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442438|gb|EFR60853.1| bifunctional protein FolC [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 435

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 28/304 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD+ + E+    LG +   T++V P+++VIT ++  H +      +     A    G+
Sbjct: 134 QGVDYAVVEV---GLGGLLDSTNIVTPNVSVITNVSIDHQAYCG---DTVEEIARHKAGI 187

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K+    +         +           +Y+F K    D +         Q        
Sbjct: 188 IKSKVPVVTAAQGTPLSIIEDVAKEKNAKLYAFNKDFGIDSRS---AVTGGQMITVSTND 244

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                +     G H + N+   L  V +L  D  +  +                      
Sbjct: 245 AAPAMLFTTMAGIHQSVNLACALMAVRLLMQDDKSISEETMREGFARTTWAGRFEVKRGL 304

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
             T I +  +    +    ++         +   +A+L D  +           +   + 
Sbjct: 305 DRTFIFDGAHNAAGAESFGMTYAELFKDTPKTIVMAILKDKNQ---------EAIIREVV 355

Query: 398 LYNISHVWLSG------FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVV 448
                 V +            AL + + R++       +++++            GD++ 
Sbjct: 356 KAG-DTVLVVPAPTDRTEVPEALVEVIRRTVPKATAQTADSVEDALALAYKHTKTGDIIA 414

Query: 449 VKSS 452
           V  S
Sbjct: 415 VCGS 418


>gi|239832308|ref|ZP_04680637.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
 gi|239824575|gb|EEQ96143.1| UDP-N-acetylmuramate--alanine ligase [Ochrobactrum intermedium LMG
           3301]
          Length = 468

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 82/462 (17%), Positives = 147/462 (31%), Gaps = 64/462 (13%)

Query: 8   HDLLQAIQGHSIGIVPQGFVNGISIDSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQ 62
            ++L  +     G            DS ++        E F         GH     A  
Sbjct: 24  AEVLHNLGYKVQGSDQS--------DSANVQRLREKGIEVFV--------GHK----AEN 63

Query: 63  KG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
            G A +VVV+T +  +   L      +  ++     LA   R R     +AI G+ GKTT
Sbjct: 64  IGDAEVVVVSTAIKKNNPELIAAREKLLPIVRRAEMLAELMRFRHA---VAIGGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  M+   L +       I     +            D D+ + E   S           
Sbjct: 121 TTSMVAALLDAGHLDPTVINGGIIN---AYGTNARMGDGDWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IAV+T I P HL ++   + + +A  +  E +   G   +  D    + L ++   
Sbjct: 173 LPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV------HHGIGYHMAQN 295
                I ++G++  A+ +    +     S  +V ++ +  E            G H   N
Sbjct: 233 R---RIITYGQNPQAEVRFVNHRMDGAASLFDVVIRSRKGEATEIKDLRLPMPGQHNVSN 289

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               + +   L    D   + L  F   + R               I + Y  +P  ++A
Sbjct: 290 ATAAIAVAHELGISADDIRRGLGSFGGVKRRFTHTGTWNG----VEIFDDYGHHPVEIRA 345

Query: 356 AISVLSQISPHGEGRRIAVLGD--MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH--- 410
            +          +GR IA++       +  L   F            ++ V+ +G     
Sbjct: 346 VLKAA---REAAKGRVIAIVQPHRFTRLASLFDEF-AACFNDADTVIVAPVYTAGEDPIE 401

Query: 411 ---VLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                 L   +  + H    Y+   + L   + S    GD V
Sbjct: 402 GVNSETLVSRIKTAGHRDARYANGPEALAPLVASIAEPGDFV 443


>gi|238750103|ref|ZP_04611606.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
 gi|238711647|gb|EEQ03862.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Yersinia rohdei ATCC 43380]
          Length = 461

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 108/364 (29%), Gaps = 28/364 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M+          Y          G     AR+     F I     
Sbjct: 105 VLAVAGTHGKTTTAGMVA--WILEACGYEPGFVIGGVPGNFNVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I      +   +   G I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLIMNNLEFDHADIFDDLKAIQKQFHHLVRIVPGKGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +  +       EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWLAR------KVSTDASVFEVLLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A              +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADAC----RVLGDFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGMCKNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       H+S  +D L   +  +    D ++V  SN  GF  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAHWSADIDTLVDMVVKTAQPSDHILV-MSNG-GFGGIHD 443

Query: 463 LLLE 466
            LL 
Sbjct: 444 KLLA 447


>gi|171742515|ref|ZP_02918322.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
 gi|171278129|gb|EDT45790.1| hypothetical protein BIFDEN_01627 [Bifidobacterium dentium ATCC
           27678]
          Length = 489

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 65/374 (17%), Positives = 110/374 (29%), Gaps = 38/374 (10%)

Query: 97  KLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+        A  I ITG+ GKT+T EM +  L++   T   +     +IG  +
Sbjct: 97  ELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEMLTACGLTAPAV----GNIGKAV 152

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L     L        A IT IA  HL    GI+  A+ KA
Sbjct: 153 SHAAVDPANDVLCVELSSFQLHFTDSLAL----DGAAITNIADDHLDWHGGIDNYAADKA 208

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F    K      N DD     L  ++          F   K    Q+           
Sbjct: 209 KVFHRASKAL--VYNADDIRVTELAERAETAEGCRRIGFTLHKPEAGQIGIVDGWIVDMS 266

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +      V     +        T+    +  A    A+                R
Sbjct: 267 GVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQR 326

Query: 332 CALNQGFFTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +  ++ ++         +    A +  + ++   +   + + G + + G 
Sbjct: 327 FTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAK-GS 385

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH---------VHYSETMDGLF 434
             +    D       + I    + G     + DA   S              S  M    
Sbjct: 386 RFERLVAD-----QAHTIKAAVIIGEDQQPMLDAFKASAPQIPLTVIDPADKSTVMARAV 440

Query: 435 LFIQSSLVDGDVVV 448
               +    GDVV+
Sbjct: 441 NAAGAYAESGDVVL 454


>gi|209550173|ref|YP_002282090.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535929|gb|ACI55864.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 471

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 143/442 (32%), Gaps = 60/442 (13%)

Query: 33  DSRSIA----PQ-EAFFAIKGPHYDGHDFILHAVQKG-AGLVVVNTDMVASIGSLSI--- 83
           DS ++        E F         GH     A   G A +VVV+T +  S   L     
Sbjct: 41  DSANVQRLRDKGIEVFV--------GHR----AENLGDAEVVVVSTAIKKSNPELIAARE 88

Query: 84  PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
            +  V  V  A   LA   R R     IAI G+ GKTTT  ++   L +       I   
Sbjct: 89  KLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTTTTSLVATLLEAGGLDPTVINGG 142

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
             +            + ++ + E   S           +   +AVIT I P HL ++   
Sbjct: 143 IIN---AYGTNARMGEGEWMVVEADES-----DGTFLKLPADVAVITNIDPEHLDHYGNF 194

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
           + + +A  +  E +   G   +  D    + L  +     I    ++G++  AD + +  
Sbjct: 195 DAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKII---TYGENPQADVRFKNV 251

Query: 264 KQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           +    +S  +V+++ +    V           G H   N    + + + L        K 
Sbjct: 252 RIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNISNATAAIAVANRLGISSADIAKG 311

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS------QISPHGEGR 370
           L+ F   + R               I + Y  +P  +KA +           I+ H   R
Sbjct: 312 LASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIKAVLRAAREACKGRIIAVHQPHR 367

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSE 428
              +     E               +       +  +G   ++L   +    H    +  
Sbjct: 368 HSRLASLFEEFAACFNDADSIFLAPVYAAGEDPI--AGIDSVSLVSRIKSGGHRDARFLN 425

Query: 429 TMDGLFLFIQSSLVDGD-VVVV 449
           + + L   +      GD VV++
Sbjct: 426 SAELLPQMVAEVAKPGDFVVLL 447


>gi|189439042|ref|YP_001954123.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227547554|ref|ZP_03977603.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|322689508|ref|YP_004209242.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
 gi|322691463|ref|YP_004221033.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|226711885|sp|B3DQM9|MURD_BIFLD RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|189427477|gb|ACD97625.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum DJO10A]
 gi|227211964|gb|EEI79860.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|320456319|dbj|BAJ66941.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. longum JCM 1217]
 gi|320460844|dbj|BAJ71464.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bifidobacterium
           longum subsp. infantis 157F]
          Length = 481

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 117/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 270 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 330 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 385 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 438

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 439 TAAGDIVL 446


>gi|159027413|emb|CAO86897.1| murD [Microcystis aeruginosa PCC 7806]
          Length = 449

 Score = 41.4 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 130/413 (31%), Gaps = 54/413 (13%)

Query: 67  LVVVNTDMVASIGSLSIPVFGV--DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKE 124
           L+VV+            P+     +  +  + +L +A R    +  + ITG+ GKTTT  
Sbjct: 68  LIVVS-----PGVPWDAPILITAREKGIETIGELELAWRYLQSSPWLGITGTNGKTTTTA 122

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHLVR 183
           +                    +IG       +  D  D+ I E+    +      +  + 
Sbjct: 123 LCAAIFQKAGLNAP----SCGNIGYAACELALKADKYDWIIAEISSYQI----ESSRDLA 174

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P I + TT  P HLS    +E     KA + +  +          +     L+    +  
Sbjct: 175 PKIGIWTTFTPDHLSRHQTLENYYQIKASLLQRSD------RQILNGDDPYLRQIGVSQW 228

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
            +  ++  + K A           + +W+    +  +   +   +G H  QN+LM +   
Sbjct: 229 QQAYWTSVQGKEALLGDPSRGVYLQDNWIVAFGELIAPVNLLKMVGSHNQQNLLMAVAAA 288

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
            +   +     +A++ F        R            I++S   N  +    +  +   
Sbjct: 289 RLAGIEKKAITEAIATFPGV---AHRLEYICTYKGLDFINDSKATNYDAAAVGLQSV--- 342

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   I + G   + G+        +AE+     ++ V L G         L  + +
Sbjct: 343 ----PSPAILIAGGEAKAGDDRAW----IAEI--KAKVATVLLIGDAAADFARRLQSAGY 392

Query: 424 --VHYSETMDGLFLFIQS--SLVDGDVVVV---KSS---------NSCGFYRL 460
                 ETMD             +  VV++    +S             F +L
Sbjct: 393 QDYECVETMDRAVQRAAELGLAKEAKVVLLSPACASFDQYQSFEHRGDHFRQL 445


>gi|258645847|ref|ZP_05733316.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
 gi|260403220|gb|EEW96767.1| tetrahydrofolate synthase [Dialister invisus DSM 15470]
          Length = 440

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 83/310 (26%), Gaps = 24/310 (7%)

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                    D+ + E+GM   G     T++V P ++VIT +A  H+             A
Sbjct: 128 FWYFRENKADYAVMEVGM---GGRFDATNVVMPVVSVITNVAMDHMQYLG---NTLQEIA 181

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
               G+ K G   +            K        IY +G+    D + +  +       
Sbjct: 182 REKAGIIKEGIPVVTAAQHVALKELKKDAHNKKARIYFYGRDFEIDTRNKWEQGQVVVVK 241

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
            +   +     ++                 +   +    D  I    +         + R
Sbjct: 242 RKGMPKELEKSMLFVPFIGAHQAVNAAVAAMALTILMKEDGRINENDLREGLARARWQGR 301

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
             ++      +      N A  +A    L +  P      +           L       
Sbjct: 302 FEIHHAGGKTVVLDGAHNEAGAEALQEALREQYPDKRRIFVF--------SSLQDKTTET 353

Query: 392 LAEVLSLYNISHVWLSGF------HVLALKDAL-PRSIHVHY--SETMDGLFLFIQSSLV 442
           + ++L       V+              + + +  + I   +  + ++            
Sbjct: 354 IIQMLVRKG-DKVYACAAPTPRTRTPEEICEMIDRQKIRAEHKIAGSVADALEKAVKEAD 412

Query: 443 DGDVVVVKSS 452
           + D+V+V  S
Sbjct: 413 ENDIVLVCGS 422


>gi|291301480|ref|YP_003512758.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
 gi|290570700|gb|ADD43665.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Stackebrandtia
           nassauensis DSM 44728]
          Length = 454

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 110/353 (31%), Gaps = 26/353 (7%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +LA   R    A  +AITG+ GKTT   ML   L++         +   +IG P  +  +
Sbjct: 93  ELAWRLRPADAAPWLAITGTNGKTTAVTMLASILTAAGL----KTAALGNIGTP-LVDAV 147

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
             D D    EL    L   +     + P +  +  +A  HLS     +  + AK  I+ G
Sbjct: 148 TADYDVLAVELSSQQLHWSK----QLSPRVGALLNLADDHLSWHGDFDAYSHAKTAIWRG 203

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                    N DD     L  K         ++ G+     F +R  K         V L
Sbjct: 204 DVH----IGNADDPRVSALL-KDAPGDTPITFTLGEPSPGQFGVRDGKLVDNTGTAPVAL 258

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                       G H   N L    +        +      + + P+  R          
Sbjct: 259 ---CDVAAIRPTGIHNVANALAATAVARAFGVPAEAVAAGFASYVPEPHRNVEIATVGGV 315

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +D+S   NP +  AAI     I     G+   V  D+  + E +           
Sbjct: 316 ---RYVDDSKGTNPHATAAAIEAYDPIVWIAGGQLKGV--DVETLVERAAPRLRG----A 366

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            L  +    L+G       D    +I     E M        +    GD V++
Sbjct: 367 VLLGVDRAILAGLLAKHAPDVPVVTIDRTDPEAMTDAVTAAAAMARPGDTVLL 419


>gi|227356149|ref|ZP_03840538.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis ATCC 29906]
 gi|227163613|gb|EEI48529.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis ATCC 29906]
          Length = 445

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 33/290 (11%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H        E    +            +       
Sbjct: 162 GLGGRLDATNIVDADIAAITSIALDHTDWLGADREHIGHEKAGIFRKNHYAVVGEPDMPL 221

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +  A   +    +  S + D             W       +  ++    I  
Sbjct: 222 SIAQVAQQKQAKLFRRGVDWSFSIDGDH------------WHWRSADKQFEKLPIPNIPL 269

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +      V   I   S+           R  +      +I +    NP
Sbjct: 270 ANAGTAMAVIRCLLKSDDKVSQGITHQSIVEGMSKAQLPGRFQIISQHPLVIFDV-AHNP 328

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLS- 407
            +       L+Q+  + + +   V+G    +G+       D+A  L+  +      +++ 
Sbjct: 329 HAAGYLAEKLAQLPRYSDTKVRIVVGM---LGD------KDIAGTLACLSPQADQWYVAP 379

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                G     L   L         ++++  +    S     D+VVV  S
Sbjct: 380 LNEFRGASAQVLAQHLDYPA---VFDSVEQAWQQAISEAQKNDIVVVCGS 426


>gi|212715553|ref|ZP_03323681.1| hypothetical protein BIFCAT_00451 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660920|gb|EEB21495.1| hypothetical protein BIFCAT_00451 [Bifidobacterium catenulatum DSM
           16992]
          Length = 292

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 12/127 (9%)

Query: 1   MNPLWTFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           MN   T   L              +  +  I+ D  S+ P   F  +     D    +  
Sbjct: 8   MNRRMTLGLLASRYGFDLDPTFATEVTITSIADDIDSVRPGSLF--MPSAPVD----VQQ 61

Query: 60  ---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS--KATIIAIT 114
              A   GA   VV   +      + IPV   +     L +LA            + A+ 
Sbjct: 62  LRQAQTLGAYGAVVPHALRGKTEGIQIPVIYAEPTAPQLGRLASEMAGSPSDSLAVFAVA 121

Query: 115 GSVGKTT 121
           G+  +  
Sbjct: 122 GNDAQAV 128


>gi|219849719|ref|YP_002464152.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
 gi|254765990|sp|B8G5Y3|MURC_CHLAD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219543978|gb|ACL25716.1| UDP-N-acetylmuramate/alanine ligase [Chloroflexus aggregans DSM
           9485]
          Length = 474

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 65/442 (14%), Positives = 124/442 (28%), Gaps = 54/442 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALN----KLAVAARL-RSK 107
           GHD    A  +GA  V+    +      L+           AL       A   R   ++
Sbjct: 52  GHD---PAYVRGADAVLATAAIRGEHPELTAA--------AALGIPRLSRADLWREWSAQ 100

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD--VDFGIF 165
             +IA+ G+ GKTTT  M         +       +     VP               + 
Sbjct: 101 RPVIAVAGTHGKTTTSAMTA----LALRGGGVACGFLIGADVPALGGSAQWGDPTAPLVI 156

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E       E   +   + P +A++T +   H   +    + A+A AE    +     + L
Sbjct: 157 EAD-----EYDRVFLALTPAMAIVTNVEWDHPDIYPTATDYAAAFAEFAAQVRDRRRLLL 211

Query: 226 NYDDSFFELL------KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW---MEVQL 276
             DD     L      +       I       +    D+   +    +E           
Sbjct: 212 CADDPGTAALDVDGQARWYGIDEQIACDPVSCRLAPLDWTASRVTVTAEGQQFDLWYYDR 271

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           +  +              + +          A     ++A            R      +
Sbjct: 272 RTFARRFALMVTLAVPGIHNVRNATAALAAAALWGADLQAAGAALATYRGSSRRFEVYGE 331

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI--DLAE 394
                + + Y  +P  ++A I+   Q  P   GRR+ V             +    +   
Sbjct: 332 VAGVTVIDDYAHHPTEVQATIAAAQQRYP---GRRVVVYVQPHTFSRTRSLWERWPEACR 388

Query: 395 VLSLYNISHVWLSGFHVLALKDA-------LPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             ++ +I  V+ +      +  A       +   +  HY   +      + + +  GDVV
Sbjct: 389 AAAIVSIGDVYPAREQGDPVALATELVAYLVAYGVVAHYGGGIATAAERLVALIQPGDVV 448

Query: 448 VVKSS----NSCGFYRLINLLL 465
           +V  +           +I  L 
Sbjct: 449 LVLGAGDSNRVAAM--VIAQLQ 468


>gi|187925444|ref|YP_001897086.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           phytofirmans PsJN]
 gi|226711891|sp|B2SYX8|MURD_BURPP RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|187716638|gb|ACD17862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia
           phytofirmans PsJN]
          Length = 504

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 73/301 (24%), Gaps = 22/301 (7%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA----SAKAEIFEG 216
           D  + EL    L       H   P  AV+  I   HL    G++  A             
Sbjct: 179 DVWVLELSSFQL----ETAHTFTPDAAVVLNITQDHLDWHGGLDAYAAAKGRIFGAQTVR 234

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +       +       +           +           D  +    Q  ++   +  +
Sbjct: 235 VLNRDDSRVMKLAPAEDSEAEMVTFGVTEPKNDGDYGLLRDNGMIWLVQAHDRDATDEPV 294

Query: 277 QGKSMEVVHHGIGYHMAQNMLMT-------LGIVSILTADVDTAIKALSVFHPKEGRGKR 329
             +  +           + ++         L   +   A             P     + 
Sbjct: 295 PKRRRKNEVVTPPNIALKRLMPADALRIRGLHNAANALAAYALTRAIGLPGAPLLHGLRE 354

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
           YR   ++       +  +    S    +            R + + G   + G+  +   
Sbjct: 355 YRGEPHRVELIASIDGIDYVDDSKGTNVGATVAALDGLAQRIVLIAGGDGK-GQDFEPLA 413

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             +           V L G     ++ AL    I +    T++       +    GD V+
Sbjct: 414 APVMRWCRA-----VMLIGRDAPLIRAALEDTGIAMTDHATLEEATRAATALAEPGDAVL 468

Query: 449 V 449
           +
Sbjct: 469 L 469


>gi|308177861|ref|YP_003917267.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
 gi|307745324|emb|CBT76296.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Arthrobacter
           arilaitensis Re117]
          Length = 509

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 58/374 (15%), Positives = 112/374 (29%), Gaps = 44/374 (11%)

Query: 97  KLAVAARLRSK---ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL-T 152
           +LA   + R+       + ITG+ GKTTT  M    L +             ++G P+  
Sbjct: 122 ELAWRVQNRAGHTAPQWLVITGTNGKTTTVGMTESILRA----DGLKAIAVGNVGTPILD 177

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             R PVD D    EL    L         + P  +V+  +A  H+    G E   +AKA+
Sbjct: 178 AVREPVDYDVFAVELSSFQLHYTH----TISPVASVVLNLAEDHVDWHDGFENYKAAKAK 233

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           I+E  +         + +   +  A          ++      +   + +          
Sbjct: 234 IYERTQIAAIFNAADEATIKMVEDADVVEGCRAIGFTTDTPAVSMVGVVEGLLVDRAFLE 293

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           E +     +  +                   ++  A         +     +    R + 
Sbjct: 294 ERKTSAVELIALKEIGEIVPRHTAANAAAAAALTRAYGVHPEAVAAGLKNFDSGDHRIQA 353

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
              +     +++S   NP +  A+++  +++     G    V     E G+L       L
Sbjct: 354 VARKDDILWVNDSKATNPHAADASLAAFTRVVWIAGGLSKGV-----EYGDLVAKHAQRL 408

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH----VHYSETMDG--------------LF 434
           A+         V L G     L++AL         +  +++                   
Sbjct: 409 AK---------VLLIGTDTAGLREALAAHAPEVEVIDITDSAQDSEGAAPSGAQVMTRAV 459

Query: 435 LFIQSSLVDGDVVV 448
                    GD V+
Sbjct: 460 SKAAEIAQAGDTVL 473


>gi|306822428|ref|ZP_07455806.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|309802475|ref|ZP_07696581.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553973|gb|EFM41882.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Bifidobacterium
           dentium ATCC 27679]
 gi|308220875|gb|EFO77181.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           dentium JCVIHMP022]
          Length = 480

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 110/374 (29%), Gaps = 38/374 (10%)

Query: 97  KLAVAARLR-----SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPL 151
           +LA   R+        A  I ITG+ GKT+T EM +  L++   T   +     +IG  +
Sbjct: 88  ELAWQLRVNADSTGEPARWIGITGTNGKTSTTEMTSEMLTACGLTAPAV----GNIGKAV 143

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           + A +    D    EL    L     L        A IT IA  HL    GI+  A+ KA
Sbjct: 144 SHAAVDPANDVLCVELSSFQLHFTDSLAL----DGAAITNIADDHLDWHGGIDNYAADKA 199

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++F    K      N DD     L  ++          F   +    Q+           
Sbjct: 200 KVFHRASKAL--VYNADDIRVTELAERAETAEGCRRIGFTLHEPEAGQIGIVDGWIVDMS 257

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                +      V     +        T+    +  A    A+                R
Sbjct: 258 GVAGGEPDQPVKVAKIADFTHLTEPDGTVYPHLLADALTALALALGLGVDKGTAIAALQR 317

Query: 332 CALNQGFFTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                     +  ++ ++         +    A +  + ++   +   + + G + + G 
Sbjct: 318 FTPGGHRIQTVATAHESDGGIIRFVDDSKATNAHAAKASLNSFADKSVVWIAGGLAK-GS 376

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH-----VHYSET----MDGLF 434
             +    D       + I    + G     + DA   S       V         M    
Sbjct: 377 RFERLVAD-----QAHTIKAAVIIGEDQQPMLDAFKASAPQIPLTVIDPADKSTIMARAV 431

Query: 435 LFIQSSLVDGDVVV 448
               +    GDVV+
Sbjct: 432 NAAGAYAESGDVVL 445


>gi|237732348|ref|ZP_04562829.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Citrobacter sp. 30_2]
 gi|226907887|gb|EEH93805.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Citrobacter sp. 30_2]
          Length = 422

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNAYDSVAQAWTAALAEAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|197285644|ref|YP_002151516.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Proteus mirabilis HI4320]
 gi|194683131|emb|CAR43714.1| FolC bifunctional protein [includes: folylpolyglutamate synthase
           and dihydrofolate synthase] [Proteus mirabilis HI4320]
          Length = 432

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 83/290 (28%), Gaps = 33/290 (11%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H        E    +            +       
Sbjct: 149 GLGGRLDATNIVDADIAAITSIALDHTDWLGADREHIGHEKAGIFRKNHYAVVGEPDMPL 208

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +  +  A   +    +  S + D             W       +  ++    I  
Sbjct: 209 SIAQVAQQKQAKLFRRGVDWSFSIDGDH------------WHWRSADKQFEKLPIPNIPL 256

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +      V   I   S+           R  +      +I +    NP
Sbjct: 257 ANAGTAMAVIRCLLKSDDKVSQGITHQSIVEGMSKAQLPGRFQIISQHPLVIFDV-AHNP 315

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLS- 407
            +       L+Q+  + + +   V+G    +G+       D+A  L+  +      +++ 
Sbjct: 316 HAAGYLAEKLAQLPRYSDTKVRIVVGM---LGD------KDIAGTLACLSPQADQWYVAP 366

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                G     L   L         ++++  +    S     D+VVV  S
Sbjct: 367 LNEFRGASAQVLAQHLDYPA---VFDSVEQAWQQAISEAQKNDIVVVCGS 413


>gi|46191054|ref|ZP_00120691.2| COG0771: UDP-N-acetylmuramoylalanine-D-glutamate ligase
           [Bifidobacterium longum DJO10A]
          Length = 474

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 117/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 89  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 148

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 149 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 203 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 262

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 263 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 322

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 323 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 378 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 431

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 432 TAAGDIVL 439


>gi|239621165|ref|ZP_04664196.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
 gi|239515626|gb|EEQ55493.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bifidobacterium
           longum subsp. infantis CCUG 52486]
          Length = 474

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 117/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 89  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 148

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 149 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 202

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 203 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 262

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 263 VRLAAITDFTHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 322

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 323 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 377

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 378 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 431

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 432 TAAGDIVL 439


>gi|148358257|ref|YP_001249464.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase
           [Legionella pneumophila str. Corby]
 gi|148280030|gb|ABQ54118.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase
           [Legionella pneumophila str. Corby]
          Length = 351

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   +QG  IG      V+ +S ID  +I P    FA       G D I  A    
Sbjct: 4   SLRDIANLVQGMVIGNDA-ITVSTLSPID--NILPGSLVFA---E---GEDNIKLAENSE 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  +++    + S      P+  V +   A   L      
Sbjct: 55  AAAILIGQGTIDSPK----PLIQVKNPFKAFIALLNHFYP 90


>gi|54293063|ref|YP_125478.1| hypothetical protein lpl0100 [Legionella pneumophila str. Lens]
 gi|81601586|sp|Q5X0C0|LPXD1_LEGPL RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase 1
 gi|53752895|emb|CAH14330.1| hypothetical protein lpl0100 [Legionella pneumophila str. Lens]
          Length = 351

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   +QG  IG      V+ +S ID  +I P    FA       G D I  A    
Sbjct: 4   SLRDIANLVQGMVIGNDA-ITVSTLSPID--NILPGSLVFA---E---GEDNIKLAENSE 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  +++    + S      P+  V +   A   L      
Sbjct: 55  AAAILIGQGTIDSPK----PLIQVKNPFKAFIALLNHFYP 90


>gi|326387156|ref|ZP_08208766.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208337|gb|EGD59144.1| UDP-N-acetylmuramate--L-alanine ligase [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 481

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 411 VLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              + D +        +  T       I++    GD +V+  +           LL   P
Sbjct: 422 SERIVDLITADGGKARHIPTRAQAADAIRALARPGDRIVIMGARDDTLSTFARELLASLP 481


>gi|196247734|ref|ZP_03146436.1| cytoplasmic peptidoglycan synthetase domain protein [Geobacillus
           sp. G11MC16]
 gi|196212518|gb|EDY07275.1| cytoplasmic peptidoglycan synthetase domain protein [Geobacillus
           sp. G11MC16]
          Length = 207

 Score = 41.4 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQS 439
           G    +    L   L    +  + L G     +      +    V Y + ++        
Sbjct: 112 GLDRGNEFDALLPYLQQ--VKAMVLFGQTAAKIGRVAREAGIETVEYVDNVEKAVPVAFR 169

Query: 440 SLVDGDVVVV 449
               GDV+++
Sbjct: 170 LSEPGDVILL 179


>gi|260773496|ref|ZP_05882412.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           metschnikovii CIP 69.14]
 gi|260612635|gb|EEX37838.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio
           metschnikovii CIP 69.14]
          Length = 443

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 116/353 (32%), Gaps = 41/353 (11%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           +L      +    +IAITGS GK+T  ++  +   +         +   +IGVP     +
Sbjct: 100 ELFAWHVDK---PVIAITGSNGKSTVTDLTGVMAKAAGVK----AAVGGNIGVPALDL-L 151

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
               D  + EL    L     L+       A    ++  H+  +SG+ E   AK  IF  
Sbjct: 152 AEAADLYVLELSSFQLETTDHLSI----AAAAFLNLSEDHMDRYSGMAEYRQAKLRIFNH 207

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
            +                       L                     +    + ++ V+ 
Sbjct: 208 AKTAVIN------------ADDRQTLPDDFSGPILSVGLNGAADYSLEIHQGEEYLSVKG 255

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                      +G H   N L  L ++  L  +   A++AL  +     R    +  +  
Sbjct: 256 TPVLAVSQLSLVGRHNIANALTALALLDALNIEYTHALEALKSYTGLTHRC---QLVVEY 312

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N AS  AA+S L+      +G    ++G + +  + +      L  VL
Sbjct: 313 DGIRWVNDSKATNLASTLAALSGLAV-----DGDLYLLVGGVGKGADFTP-----LKPVL 362

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           +   +  +   G         +P      Y  ++  +   I   L  GD+V++
Sbjct: 363 ATLPV-KLCCFGVDGQQF---MPLHPSARYYPSLSAILEEIHPQLKAGDMVLL 411


>gi|254470266|ref|ZP_05083670.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
 gi|211960577|gb|EEA95773.1| UDP-N-acetylmuramate--alanine ligase [Pseudovibrio sp. JE062]
          Length = 473

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 77/408 (18%), Positives = 129/408 (31%), Gaps = 37/408 (9%)

Query: 57  ILHAVQK--GA-GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           + HA     GA   V+ +    +++   +     +  V  A   LA   R +     IAI
Sbjct: 57  VGHAADNLEGADVCVISSAIKGSNVELKAARENNMPVVRRA-EMLAELMRFKQA---IAI 112

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  M+   L +       I     +            + D+ + E   S   
Sbjct: 113 GGTHGKTTTTSMVAALLDAGHMDPTVINGGIIN---AYGTNARMGEGDWMVVEADES--- 166

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                   +   IAV+T I P HL ++   + + +A A+  E +   G   +  D    +
Sbjct: 167 --DGTFVKLPADIAVVTNIDPEHLDHYGDFDGVRAAFAQFVENVPFYGFAVMCLDHPEVQ 224

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------MEVVHH 286
            L  +        I ++G +  AD +         +S   V +  +         ++V  
Sbjct: 225 SLVGQIEDR---RIITYGTNPQADVRFTDVSTKGGKSIFSVSIHDRRGDKVTELQDLVLP 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES- 345
             G H   N    + +   L    +   K L+ F   + R           FF       
Sbjct: 282 MPGLHNVSNATAAIALAHSLGISGENIRKGLASFGGVKRRFTHTGSWNGVEFFDDYAHHP 341

Query: 346 --YNANPASMKAAIS--VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
               +   + + A    V++ + PH   R  ++  D C     +    I          I
Sbjct: 342 VEIKSVLHAAREAAEGKVIAVMQPHRFTRLQSLFEDFCACFNDADKVVIAPVFAAGEQPI 401

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                 G     L   L    H  VH     D L   I      GD+V
Sbjct: 402 E-----GADQPDLISGLRAGGHRSVHSIAGPDELAGKIAELAEPGDLV 444


>gi|46580910|ref|YP_011718.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120601789|ref|YP_966189.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|62900546|sp|Q728U6|MURD_DESVH RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158513900|sp|A1VBE6|MURD_DESVV RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|46450330|gb|AAS96978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562018|gb|ABM27762.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Desulfovibrio
           vulgaris DP4]
 gi|311234601|gb|ADP87455.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris RCH1]
          Length = 433

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 9/125 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           + ++ +A R  S   +IA+TG+ GKTTT  +    L +   +         +IG PL   
Sbjct: 105 MAEMELAWRELSGEPVIAVTGTSGKTTTVSLCAHMLRTQGLSVFLG----GNIGTPLCEY 160

Query: 155 RMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
            +     D  + E+    L          RP +A++  I   HL   + ++E   AK  +
Sbjct: 161 VLEGKRADVLVIEISSFQL----QTCSTFRPRVAMLLNITANHLDYHADMQEYIDAKFRL 216

Query: 214 FEGLE 218
           F   +
Sbjct: 217 FRCQD 221


>gi|296105610|ref|YP_003617310.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
 gi|295647511|gb|ADG23358.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 351

 Score = 41.4 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   +QG  IG      V+ +S ID  +I P    FA       G D I  A    
Sbjct: 4   SLRDIANLVQGMVIGNDA-ITVSTLSPID--NILPGSLVFA---E---GEDNIKLAENSE 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  +++    + S      P+  V +   A   L      
Sbjct: 55  AAAILIGQGTIDSPK----PLIQVKNPFKAFIALLNHFYP 90


>gi|308184776|ref|YP_003928909.1| hypothetical protein HPSJM_05105 [Helicobacter pylori SJM180]
 gi|308060696|gb|ADO02592.1| hypothetical protein HPSJM_05105 [Helicobacter pylori SJM180]
          Length = 335

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDKDVAWIKLKDIEHSLNHLFKF 91


>gi|227494646|ref|ZP_03924962.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
 gi|226831828|gb|EEH64211.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces
           coleocanis DSM 15436]
          Length = 494

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 110/353 (31%), Gaps = 29/353 (8%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
               +AITG+ GKTTT  ++   L +         +   ++G P+    +  DV+    E
Sbjct: 120 DIKWLAITGTNGKTTTVGLVGSILEAA----GAKYAVVGNVGEPIVTTVLKADVEVLAVE 175

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L      TH + P  AV   +   HL     +E    AKA I+E  +      + 
Sbjct: 176 LSSFQL----ETTHTLSPLAAVCLNVDADHLDWHGSVENYRDAKARIYENTQVGCVYDVT 231

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK---SMEV 283
                  +  A+         Y+ G    +   L +              Q +    +  
Sbjct: 232 DRTVENMVAGAEVIEGARAIGYTLGSPAPSQIGLVEKLLVDRAFVENRHHQAEAVAEISD 291

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +      H +  ++        LT     + +A++         K  R  + +    +  
Sbjct: 292 IFGFASEHPSIALVKDTLAAIALTRAYGVSGEAVAAGLRNFKSAKHRRAVIGKTADVVWI 351

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +   A            + ++       + + G         Q  H  +A++     +  
Sbjct: 352 DDSKATNTHA-----AKASLAGFPPQSVVWIAGGD----TKGQELHSLVADI--KDCLRG 400

Query: 404 VWLSGFHVLALKDALPRS---IHVHYSETMDGL----FLFIQSSLVDGDVVVV 449
           V + G     + +AL  +   I     +  + +         +  + G+ VV+
Sbjct: 401 VVVIGADPTPVVEALQTNAAEIPYVVVDGHEDMMFSVVNEAVALSLPGNTVVL 453


>gi|54296095|ref|YP_122464.1| hypothetical protein lpp0114 [Legionella pneumophila str. Paris]
 gi|81602068|sp|Q5X8X9|LPXD1_LEGPA RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase 1
 gi|119371427|sp|Q5ZZB1|LPXD1_LEGPH RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase 1
 gi|53749880|emb|CAH11262.1| hypothetical protein lpp0114 [Legionella pneumophila str. Paris]
 gi|307608845|emb|CBW98240.1| hypothetical protein LPW_01001 [Legionella pneumophila 130b]
          Length = 351

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   +QG  IG      V+ +S ID  +I P    FA       G D I  A    
Sbjct: 4   SLRDIANLVQGMVIGNDA-ITVSTLSPID--NILPGSLVFA---E---GEDNIKLAENSE 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  +++    + S      P+  V +   A   L      
Sbjct: 55  AAAILIGQGTIDSPK----PLIQVKNPFKAFIALLNHFYP 90


>gi|291532185|emb|CBL05298.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD
           [Megamonas hypermegale ART12/1]
          Length = 85

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 27/103 (26%)

Query: 6   TFHDLLQAIQGHSIGI-VPQGFVNGISIDSRSIAPQEAFFAIKGPH-----YDGHDFILH 59
           T  ++   I G   G       + G +             A+ GP       D H  +  
Sbjct: 4   TLAEIANLINGKLCGDYDENLVITGAT--------G---IALAGPSEITFAVDPH--LEE 50

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           A+   A  V++  D+       S     V      L KL++  
Sbjct: 51  AIACNAAAVIIQEDVDG----FSKTCIKV----KILEKLSIFY 85


>gi|254502723|ref|ZP_05114874.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
 gi|222438794|gb|EEE45473.1| UDP-N-acetylmuramate--alanine ligase [Labrenzia alexandrii DFL-11]
          Length = 469

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 129/417 (30%), Gaps = 52/417 (12%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A ++VV++ +      L      +  V  V  A   LA   R +   
Sbjct: 56  GH----AAENLGEAEVLVVSSAIKKDNPELVAAREKLIPV--VRRA-EMLAELMRFKQA- 107

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  M+   L +       I     +            D D+ + E  
Sbjct: 108 --IAVGGTHGKTTTTSMVAALLDAGHLDPTVINGGIIN---AYGTNARMGDGDWMVVEAD 162

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   +A++T I P HL ++     +  A  +  + +   G   +  D
Sbjct: 163 ES-----DGTFVKLPADVAIVTNIDPEHLDHYGDFSGVQKAFRQFIDNVPFYGFAVMCLD 217

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM------- 281
               + +           I ++G +  AD +         +S   V ++ +         
Sbjct: 218 HPEVQTMIGNIEDR---RIVTYGTNPQADVRFTDVSMDGGKSMFSVTIRDRRSGEETELS 274

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +V    G H   N    + + S L        K +S F   + R      A        
Sbjct: 275 NLVLPMPGLHNVSNATAAIAVASQLGVSPQDIEKGISSFGGVKRRFTFTGEAGG----VQ 330

Query: 342 IDESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  +KA +           ++ + PH   R  ++  D       + +  I  
Sbjct: 331 VFDDYGHHPVEIKAVLHAARESTDGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVVITP 390

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                   I      G     L   L    H  V      + L   ++     GD V
Sbjct: 391 VYEAGEQPIE-----GARHTDLVSGLKTRGHRQVQAINGPEELASVVKELAGPGDFV 442


>gi|148273039|ref|YP_001222600.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|189028983|sp|A5CS50|MURC_CLAM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|147830969|emb|CAN01914.1| putative UDP-N-acetylmuramate--alanine ligase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 476

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 66/401 (16%), Positives = 125/401 (31%), Gaps = 31/401 (7%)

Query: 53  GHD--FILHAVQKGAGLVVV-NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD   +  A        +  +           +P+        AL  L    R      
Sbjct: 65  GHDAAHVGDADALVVTGALWQDNPEYVLAKERGLPILHRS---QALAWLISGQR------ 115

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTT+  M+  AL    +  + +          L ++  P   +  + E   
Sbjct: 116 LVAVAGAHGKTTSTGMIVTALLEAGRDPSFVNGGVIGG---LGVSSAPGSEELFVVEADE 172

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    + + T      +A+IT +   HL ++   E    A         +   I  +   
Sbjct: 173 SDGSFLLYDT-----SVALITNVDADHLDHYGSHEAFDDAFVRFASAASELVVISSDDPG 227

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                   +  A     + +FG+   AD ++             +   G S        G
Sbjct: 228 ------ARRVTARIEGRVVTFGEDPAADIRITD-IVTDGPVAFTLTHDGVSRRAALRVPG 280

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N      ++  L  D D AI  L+ F     R + +        +          
Sbjct: 281 RHNAINAAGAYAVLVGLGVDPDDAIAGLAGFSGTGRRFELHAEVRGVSVYDDYAHHPTEV 340

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLYNISHVWL 406
            A+++AA +V+ +       +           G+ +   + +LA+   VL ++      +
Sbjct: 341 RAALEAARTVVGEGRIIAVHQPHLYSRTRMMAGDFA-RVYEELADHTIVLDVFGAREDPI 399

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            G     + +    + HV Y                DGD +
Sbjct: 400 PGVTGALVSECFEDAGHVDYLPDWQEAADRAAEIARDGDFI 440


>gi|221066095|ref|ZP_03542200.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Comamonas testosteroni KF-1]
 gi|220711118|gb|EED66486.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Comamonas testosteroni KF-1]
          Length = 333

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 18/176 (10%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M+ L     +L A+ G  IG   +  ++ I+ +DS      +  F +          +  
Sbjct: 1   MSVL--LGQILDALGGELIGGEREMTISRIAPLDS--AGHGDLSFLSNP-------RYRQ 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSV 117
                 A  V+V   +               D      +     +  +       I  S 
Sbjct: 50  QLAASQAACVIVAPALRDEAAQRGA-CIVTADPYAYFARATQWWKAHQQGGRPSGIHASA 108

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
               T ++   A    +              +    +R+ +     + E  + H G
Sbjct: 109 VVDATAQVHASACVGPQCVVEAGAVIGADTVL---KSRVTIGQGCVVGERCIVHPG 161


>gi|52840355|ref|YP_094154.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52627466|gb|AAU26207.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 356

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           +  D+   +QG  IG      V+ +S ID  +I P    FA       G D I  A    
Sbjct: 9   SLRDIANLVQGMVIGNDA-ITVSTLSPID--NILPGSLVFA---E---GEDNIKLAENSE 59

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           A  +++    + S      P+  V +   A   L      
Sbjct: 60  AAAILIGQGTIDSPK----PLIQVKNPFKAFIALLNHFYP 95


>gi|121998872|ref|YP_001003659.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
 gi|121590277|gb|ABM62857.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 41.4 bits (95), Expect = 0.35,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 106/348 (30%), Gaps = 35/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   + A+TGS GK+T   +L     +         +   ++G P          D
Sbjct: 104 FAEAVAGPVCAVTGSNGKSTVVSLLGEMARAAGWDV----AVGGNLGTPALELLEQAPAD 159

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + E+    L          R  +A +  ++  H+  +  +++ A+AKA + +G     
Sbjct: 160 GYLIEVSSFQL----EACPGFRADVAALLNVSADHMDRYDSLDDYAAAKARVLDGARVA- 214

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
              LN +D     L  ++ A+    +         +           ++W+    Q +  
Sbjct: 215 --VLNAEDPQIAGLGQRADAVRHFNLDGPADYHLLEQ--------GGRAWLAAAGQPRQA 264

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                  G     N L  + +   L        +AL  F     R               
Sbjct: 265 IDELPVPGRAHCANALAAMALADALGIAEVAQCRALQAFSGLPHRM---ESVGEWRGVRW 321

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           I++S   N  +                G    V+      G+ +      LA+  +    
Sbjct: 322 INDSKATNVGAAV----------AAIGGLHRPVVLIAGGQGKGAD--FRPLAQACAESA- 368

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             V L G    A++ A+   +    +++M G           GD V++
Sbjct: 369 RAVVLIGEDAAAIEAAIAGRVPTERADSMVGAVAAAARWAEPGDAVLL 416


>gi|315303393|ref|ZP_07874000.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313628236|gb|EFR96762.1| UDP-N-acetylmuramate--alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 447

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERAMELDLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDVPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             ++ +FQ +   + +  +  +                G H   N L  + +       V
Sbjct: 223 FGEDNEFQAKNVIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +     L  F   + R             +         +             V++   P
Sbjct: 283 EAVKAELKTFEGVKRRFSITEKSNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +       G V++   
Sbjct: 396 IKEEHTEELLKY------PGAVILFMG 416


>gi|293609248|ref|ZP_06691550.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827700|gb|EFF86063.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 356

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQK 63
           +   +L   + G  +G     F+N  S+   +  P    F        +G  +I  A   
Sbjct: 6   YRLDELAHLVNGELVGAGSLQFINLASL--ENAEPSHITFV-------NGEKYIDQAKTS 56

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            AG  +V + +   +         VD+   A   L  A   +   T I I  +
Sbjct: 57  RAGAYIVTSSIKEQLTDKQ-NFIIVDNPYLAFAILTHAFDKK--ITSIGIEST 106


>gi|289522905|ref|ZP_06439759.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503929|gb|EFD25093.1| UDP-N-acetylmuramate--alanine ligase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 485

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 61/395 (15%), Positives = 126/395 (31%), Gaps = 40/395 (10%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEM 125
             +  + D +       + V    D+L        +   R K   I + G+ GKTTT  M
Sbjct: 86  SAIAWDNDELVYARKAGVNVARRGDIL-------SSIFNRLKG--IGVAGAHGKTTTSSM 136

Query: 126 LTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGMSHLGEIRFLTHLVRP 184
           +   L +                V        +   D+ + EL  S      F  ++   
Sbjct: 137 IATVLDAAGLDPTIAIGGE----VSDIGGNARLGHGDYMVSELDESDGSFELFSCYIP-- 190

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
              V+T I   H++ +   + +  A        +  G I +  +D+  + +  K      
Sbjct: 191 ---VVTNIDWDHVNFYPTFQSVQDAFVRFLSKRKDDGKIIICGEDTGCQSVAGKF--APQ 245

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              Y +G   +              S+  V+   +  E+     G H   N L    +  
Sbjct: 246 CITYGWGMQWDWGAVGVNHSVGGGVSFTVVKRGAEIGEINLRVSGEHNVLNALAACAVCD 305

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +L    +T   AL  F   + R +     L         + Y  +P  ++A +  L  I 
Sbjct: 306 LLGISFNTIRHALHKFKGTKRRLQC----LGVCDDIYFYDDYGHHPREVQATLDTLRNIF 361

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           P        V+         +++ +   AE L   ++ ++         L+ ++   + V
Sbjct: 362 PSR----RLVVIFQPHRYSRTKAMYRKFAEALMKADLVYILPVYPADEKLELSISSDLIV 417

Query: 425 HYSETM-----------DGLFLFIQSSLVDGDVVV 448
               +            D +   +  +++ GD+++
Sbjct: 418 DSLTSECGHKNCLSLSDDEVVSKVAENILPGDILL 452


>gi|301336324|ref|ZP_07224526.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           muridarum MopnTet14]
          Length = 416

 Score = 41.4 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 13/93 (13%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
           +G  ++ +               V   G     +   L     V     +    L  +  
Sbjct: 318 LGGRNKGYTFSALLPALRRAAKRVIAMGESAPEIARDL-EGFPVTVVRDLQEALLCAEEQ 376

Query: 441 LVDGDVVVV---KSS---------NSCGFYRLI 461
            V GD+VV+    +S             F +L+
Sbjct: 377 AVPGDIVVLSPACASFDQFRSYEERGAIFKQLV 409


>gi|314918543|gb|EFS82374.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA1]
          Length = 498

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKVTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|170767490|ref|ZP_02901943.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia
           albertii TW07627]
 gi|170123824|gb|EDS92755.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia
           albertii TW07627]
          Length = 422

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKRFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|170761741|ref|YP_001787794.1| putative D-proline reductase, PrdA proprotein [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169408730|gb|ACA57141.1| D-proline reductase, PrdA proprotein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 703

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 14/104 (13%)

Query: 374 VLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMD 431
           +  DM + G L+   + + + EV+    +  V         + +   +         T +
Sbjct: 38  IFPDMIDSGLLTIPGNCLKVGEVIGAKLLKTVDSLTPLTSDIVEGAKKIGEEDKEDSTTE 97

Query: 432 GLF-------LFIQSSLVDGDVVVVKSS---NSCGFYRLINLLL 465
                       ++ +L  GD++  K+S   N   F +L++ LL
Sbjct: 98  EALLTEGNEKAVLKYNLKAGDII--KASDLENPMHFEKLVDSLL 139


>gi|167773014|ref|ZP_02445067.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
 gi|167664947|gb|EDS09077.1| hypothetical protein ANACOL_04402 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 114/348 (32%), Gaps = 37/348 (10%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           I + G+ GKTTT  MLT  L         +          +       +    + E    
Sbjct: 114 ICVCGTHGKTTTTAMLTQMLLGAGLDPTAVIGGKLP---AIGGNGRAGESSLMVCEAC-- 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E +     + P ++VI  +   HL  F  IE I  +  +  +   +T  +  +  +S
Sbjct: 169 ---EFKDHFLQLHPDLSVILNVDADHLEYFGTIENIIKSFHKFADMTTRTIIVNGSDPNS 225

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +       +  K I +FG  ++ D+     ++   Q+  ++   G+++  +   +  
Sbjct: 226 MRAV-----EGINGKEIITFGWDEHFDYYPANIRRKGAQAEFDLCCGGRALTHLTLHVPG 280

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                        +I +      + AL     +     R    L +     I + Y  +P
Sbjct: 281 LHNILNATAACAAAIKSG---VPVTALGEHLAQFRGAGRRFEILGEVHGVTIADDYAHHP 337

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW----- 405
           A +   +    ++      R  AV          ++    D A+ LSL     V      
Sbjct: 338 AEIAVTLRAAREM---DFRRVWAVFQPFTY--SRTKLLMDDFAKALSLA--DRVVMSEIM 390

Query: 406 ------LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                   G +   L + +P S+   +    + +  ++      GD+V
Sbjct: 391 GSREKNTEGVYTSQLAEKIPGSV---WFAGFEEIADYVMKHAESGDLV 435


>gi|307257474|ref|ZP_07539241.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864054|gb|EFM95970.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 439

 Score = 41.4 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 88/318 (27%), Gaps = 23/318 (7%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
              F + E     S   + R       P   +I  I   H   F  ++ I      +   
Sbjct: 139 SSKFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNIEFDHADIFDDLKAIQRQFHHLVRT 198

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   G I     D   +             + S+ + +      + + +         ++
Sbjct: 199 MPSGGCILSAAADENVQ---------NTLKMGSYSELQFIGEDKQWFTKPISADCSHFEV 249

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  +          A NM   L  ++       +   A           +R       
Sbjct: 250 FHKGEKAGEVKWNIIGAHNMHNALMAIAAAHHAGVSVAGACDALGSFINANRRLEVKGEV 309

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEV 395
              T+ D+  +   A      + ++ +       +  +         +    H + +A  
Sbjct: 310 NGITVYDDFAHHPTA----IAATINALRGKVGKEQRILAVLEPRSNTMKMGLHKEEIAPS 365

Query: 396 LSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L   N   V+      + V  + D L +     +S  +D L   I       D ++V  S
Sbjct: 366 LVDANAVFVYQPDTIPWAVSVITDNLTQL--AKWSADLDELVKMIVEEAKPTDHILV-MS 422

Query: 453 NSCGFYRLINLLLEEFPA 470
           N   F  +   LL+   A
Sbjct: 423 NG-AFGGIYQKLLQALKA 439


>gi|304437326|ref|ZP_07397285.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369582|gb|EFM23248.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 469

 Score = 41.0 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 82/308 (26%), Gaps = 37/308 (12%)

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                T     HI     I P H+     +E   + K ++F        + LN DD    
Sbjct: 182 YQMEATTHFHAHIVAELNITPDHIVRHGSMEVYQAMKEKLFAAQTAEDYLVLNADDPHTR 241

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            +  +        +  F + +                  +               G H  
Sbjct: 242 GMAER----AAGRVCLFSRREELAEGACVRADGMIVIRWDGAEHVLIPADELGIPGAHNV 297

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
           +N+L    +              L  F   E R             +  ++S   N  S 
Sbjct: 298 ENVLAASAMALFAGVTPAEMRPVLRAFKGVEHRI---EFVRALAGVSYYNDSKATNTDSA 354

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----- 408
             A+           G  I + G     G+   +   +  E++    +  + L G     
Sbjct: 355 IKALEAFD-------GHIILIAG-----GDDKLTDLGEFMELVHAR-VDELILVGDAAER 401

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS---------NSCG 456
           F   A    +P          M+      +   V+G +V++    +S             
Sbjct: 402 FAAAARDAGIPEEQIHRVGYHMEKAVHLARELAVEGQIVLLSPACASFDMYGGYEERGRD 461

Query: 457 FYRLINLL 464
           F RL+N L
Sbjct: 462 FKRLVNEL 469


>gi|317484861|ref|ZP_07943753.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
 gi|316923907|gb|EFV45101.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bilophila
           wadsworthia 3_1_6]
          Length = 445

 Score = 41.0 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 61/422 (14%), Positives = 119/422 (28%), Gaps = 86/422 (20%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           G    V++  +        +          A  +LA   R  S   ++ +TG+ GKTTT 
Sbjct: 91  GVAAAVISKFLPDGTPPEIM----------AETELA--WRQLSGEPVLGVTGTSGKTTTT 138

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGMSHLGEIRFLTHLV 182
            +    L     T         +IG PL+   +     D  + EL    L         +
Sbjct: 139 SLCAAMLKEQGLTVFTG----GNIGTPLSEYILSGEKADVVVLELSSFQL----QTCSTL 190

Query: 183 RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHAL 242
            P + ++  I+  HL     ++E  SAK  +F    +T    L                 
Sbjct: 191 HPRVGILLNISENHLDFHKDMDEYISAKMRLFANQTETDLAVLQDGMDELA--------- 241

Query: 243 GIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                                     +  ++ +    +       +      N       
Sbjct: 242 -------------------------GKYGIKARKIHYTESDRFPDMQLMGPHNRCNAEAA 276

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
                    T   A       +    R            +++S      +++ A+S    
Sbjct: 277 WLACREFGVTEEAAARAVAAFQPLEHRLEKVAEINGVLYVNDSKCTTVEALRVALSSF-- 334

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI 422
                +   + + G   + G+L           L   +   V L G      + A   ++
Sbjct: 335 -----DRPVVLLAGGKFKGGDLPGLC------PLLKEHARCVALFGASRERFEPAWRDTL 383

Query: 423 HVHYSETMDGLFLFIQ------SSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
            V +  T++     +       +   +GDVV++    SS             F R+++ +
Sbjct: 384 PVTWDRTLEQALRRVAGKDGQPALAHEGDVVLLAPACSSYDQYPNYLRRGEDFKRVVHEV 443

Query: 465 LE 466
           L 
Sbjct: 444 LA 445


>gi|300813254|ref|ZP_07093616.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512635|gb|EFK39773.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 86

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 20/86 (23%)

Query: 390 IDLAEVLSLYNISHVWLSG------FHVLALKDALPRSIHVHYSET-MDGLFLFIQSSLV 442
            ++ E+        + L          +  L+     S+ +  S++ +     +I     
Sbjct: 3   EEIGELA-----DLLILVDLENKSNEDIEILEKEAQASVKIVMSKSSLKEALNYIVPMAR 57

Query: 443 DGDVVVVKSSNSCGFYRLINLLLEEF 468
             D+++V  S        + L+ E +
Sbjct: 58  PDDLILVSGS--------LQLIKEFY 75


>gi|119358484|ref|YP_913128.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
 gi|166222971|sp|A1BJX7|MURC_CHLPD RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|119355833|gb|ABL66704.1| UDP-N-acetylmuramate--L-alanine ligase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 466

 Score = 41.0 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 55/390 (14%), Positives = 112/390 (28%), Gaps = 30/390 (7%)

Query: 70  VNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIA 129
                + +     IPV   D     L +L            + ++G+ GKTTT  M+   
Sbjct: 78  AENVEIVAAEQAGIPVIKRD---EMLGELMRYNYG------VCVSGTHGKTTTTAMIATM 128

Query: 130 LSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVI 189
           L    ++   +    +     L  + +     + + E       E       + P IAVI
Sbjct: 129 LIEAGESPTVMIGGVSDY---LKGSTVVGSGKYLVIEAD-----EFDRAFLKLTPTIAVI 180

Query: 190 TTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            ++   H+  +  IEE+  A       +   G +    D      L    +        +
Sbjct: 181 NSLESEHMDTYGTIEELRKAFIAFANKVPFYGRVICCVDWPEIRKLIPHLNR----RYTT 236

Query: 250 FGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
           FG  + AD           +S   V+  GK    V   +         +      +    
Sbjct: 237 FGIDEPADVMASDMVMDKNRSRFTVRASGKEYPGVSLNVPGRHNVMNALAAFASGLELGI 296

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM--------KAAISVLS 361
               I A    +    R  + +   + G   + D +++ +                 +++
Sbjct: 297 APERIIAGLTRYSGMRRRFQIKYDNSAGVLVVDDYAHHPSEVKAAVKAARDGWPNAEIVA 356

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRS 421
              PH   R      +       +   ++            +  +SG  V A        
Sbjct: 357 VFQPHLFSRTREFADEYGWALLRADKIYVADIYPSREKAADYPGVSGSLVAAAVHKA-GG 415

Query: 422 IHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            H  +    + L+  +++      VV+   
Sbjct: 416 KHAEFIADRELLYQTVETCPQKSTVVLFMG 445


>gi|116333861|ref|YP_795388.1| folylpolyglutamate synthase [Lactobacillus brevis ATCC 367]
 gi|116099208|gb|ABJ64357.1| Folylpolyglutamate synthase [Lactobacillus brevis ATCC 367]
          Length = 440

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 41/311 (13%), Positives = 93/311 (29%), Gaps = 26/311 (8%)

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           +        VD  I E+    LG +   T+++ P ++VITTI   H+      + I    
Sbjct: 130 MFCYFAQHPVDMVIVEV---GLGGLYDSTNIITPAVSVITTIGLDHMKILG--DTIPEIA 184

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A+    ++    +           +  ++ A     I + G+      Q         + 
Sbjct: 185 AQKAGIIKPQVPVICGRLTPEALAVMDQTAAAKSAMIVALGRDFQVTNQPHDQ---WGER 241

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
           +       +   +    +G +   N    L    +        +   ++           
Sbjct: 242 FGFAFKTNRWQHLQIDLLGQYQIDNAATALTAFLVYHQQRQLPVSVTTIRQGLSHTAWPG 301

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R         ++ +  +  PA ++ A  +            +A+L D           + 
Sbjct: 302 RFERVNEQPLMVIDGAHNEPAMVEMAQLLRQHFGDREVYVILAILAD---------KQYQ 352

Query: 391 DLAEVLSLYNISHVWLS---GFHVL------ALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            + + L      HV ++   G          AL+ A      +  +         + +++
Sbjct: 353 QMVKTLLQVPNVHVVVTQFQGPGKRQAASPDALEQAATTHERLSSAPDWPSALKQVLATM 412

Query: 442 VDGDVVVVKSS 452
              DVV++  S
Sbjct: 413 SAEDVVLLTGS 423


>gi|327330615|gb|EGE72361.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL097PA1]
          Length = 498

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNLLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|313683411|ref|YP_004061149.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156271|gb|ADR34949.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 431

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 52/426 (12%), Positives = 116/426 (27%), Gaps = 84/426 (19%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            +   AV +GA  ++   +                                 +  +I IT
Sbjct: 34  KYKEDAVSRGAHSIISPDE-------------------------CWKVFGLDRIRVIGIT 68

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSY-----------------NNHIGVPLTLARMP 157
           G+ GKTTT   +   L  +    A  G+                              + 
Sbjct: 69  GTNGKTTTASAIYSLLLDLGHKAAMQGTRGFFMNDAPVEGKTLTTPTVLNTYRHMAQAIA 128

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              ++ + E+  SH  E   +  +    + ++T I   HL     IEE    K   F+  
Sbjct: 129 SGCEYFVMEV-SSHAIEQERIAGIT-FALKILTNITQDHLDYHESIEEYTRIKNLFFQDE 186

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            K           F             K  +++G    A +++  +   +  S +    +
Sbjct: 187 SKKLINKDEGKAEF-----------NFKNAFTYGVENPATYKIIAYSLNNGVSGVLKYFE 235

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                V      +++         +  +    ++     +  F    GR +     +++ 
Sbjct: 236 DHVPFVSSLHGFFNLYNITAAMAAVHLVTDESLEKIADVVENFGGVSGRME----VVSES 291

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++  +             ++   E   + V G     G         L   ++
Sbjct: 292 PLVIVDFAHTPDGME--------QVLNALKEKEVLVVFGA----GGDRDRKKRPLMGKVA 339

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD-VV 447
           +     V+++  +            +   +    +V                   GD VV
Sbjct: 340 VAYAKKVYVTSDNPRFEDPDAIIEDILAGIEDKSNVVVDVNRRSAIAQALKE-RSGDEVV 398

Query: 448 VV--KS 451
           ++  K 
Sbjct: 399 LILGKG 404


>gi|312132482|ref|YP_003999821.1| murd [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773410|gb|ADQ02898.1| MurD [Bifidobacterium longum subsp. longum BBMN68]
          Length = 481

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 72/368 (19%), Positives = 117/368 (31%), Gaps = 39/368 (10%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVD 161
           R  + A  I ITG+ GKT+T EM +  L++            +  + + L+        D
Sbjct: 96  RTGTPAPWIGITGTNGKTSTTEMTSEMLTACGLDAPTAGNIASGDMSMSLSRCATNPQHD 155

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
               EL    L     L        A IT IA  HL    G E  A+ K+++F   +   
Sbjct: 156 VLCVELSSFQLHFTDSLAL----DCAAITNIADDHLDWHGGRENYAADKSKVFHNAK--R 209

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRKWKQCSEQSWMEV 274
            I  N  D+    L A++          F       G+    D  +      +  +  E 
Sbjct: 210 AIVYNAQDAKVSELAAEAQTAEGCRKVGFTLEAPQAGQIGIEDGWIVDRSGVAGGAVGES 269

Query: 275 -----QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
                      +      +  H+  + L  L +V  L AD DTA+KAL+ F P   R + 
Sbjct: 270 VRLAAITDFAHLAEPDGSLYPHLVADALTALALVLGLGADRDTALKALTSFKPGGHRIET 329

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
              A  +G      +   A            + +S       I + G + +         
Sbjct: 330 VAEAAVEGGSVRFVDDSKATNGHA-----ARASLSSFPAKSVIWIAGGLAKGSRFEDLVK 384

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDAL---PRSIHVHYSE------TMDGLFLFIQSS 440
                    + I    + G     + +A       I V   +       MD       + 
Sbjct: 385 DQ------AHTIKAAVIIGKDQQPMIEAFASQAPDIPVTIIDPEDNDTVMDRAVEACGTY 438

Query: 441 LVDGDVVV 448
              GD+V+
Sbjct: 439 TAAGDIVL 446


>gi|167037933|ref|YP_001665511.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116348|ref|YP_004186507.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856767|gb|ABY95175.1| FolC bifunctional protein [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929439|gb|ADV80124.1| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 427

 Score = 41.0 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 14/92 (15%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLF 436
           G L       + +++       +  +         A          +V   E ++    +
Sbjct: 335 GMLKDKDTQKMLDIIVPEA-DMIITTTPISERAYKASELAQKIDKENVIPIENIEKAVKY 393

Query: 437 IQSSLVDGDVVVVKSS-------NSCGFYRLI 461
                 + D+V+   S        S    ++I
Sbjct: 394 ALDIAKEEDMVLFCGSLYMIGYVRSM-LKKVI 424


>gi|301168123|emb|CBW27709.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Bacteriovorax marinus SJ]
          Length = 497

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/379 (10%), Positives = 108/379 (28%), Gaps = 39/379 (10%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++ I G+ GKTTT  ++T     +                    +    D  +   E
Sbjct: 138 DVNVVGIAGTHGKTTTTYLMTQVFEKLGHNPGYFIGGVVDG----RKSSTLGDGKYFFIE 193

Query: 167 LGMSHLGEIRFLTHLVRP--HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                      ++          ++T++   H   F+ IE+I +    + +     G + 
Sbjct: 194 SDEYDSAYFEKISKFRSYSIDHLILTSLEFDHADIFNDIEDIKNEFRAMLD--SFKGKLI 251

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            +        L ++      +           +   +      + +   +  +G  ++  
Sbjct: 252 YDNSYKATNELVSEYGKDFKENF----LIAYGEENPKIKSVAKDGTSFSLIWKGGELDFK 307

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
            + +G H   N+   +        + +    +++       R    +    +    ++ +
Sbjct: 308 TNLVGKHNILNLSSVILFALGEGIEYENIKSSITNLKLVRRR----QEVRGKYQEAIVID 363

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +  +P +++     +  + P  +   + V+ +       S  F  + A  L      +V
Sbjct: 364 DFAHHPRAVELTTEGIKNLYPEKK---VKVVIEPNSATARSDIFQSEFATALK--CADYV 418

Query: 405 WLSGFHVLALKDALPR-------------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +                           +       ++ L   I        V++V  
Sbjct: 419 VFAKPQRHTSVKGAKDLDGHKILSELEKIGVKGTIQTNLEDLVKEINKIADKDTVLLVL- 477

Query: 452 SNSC--GFYR--LINLLLE 466
           SN    G ++   +  L+ 
Sbjct: 478 SNGTCLGLWQSDFVEKLIN 496


>gi|289426292|ref|ZP_06428038.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK187]
 gi|289153457|gb|EFD02172.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK187]
 gi|313791787|gb|EFS39898.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA1]
 gi|313802126|gb|EFS43358.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL110PA2]
 gi|313838458|gb|EFS76172.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL086PA1]
 gi|314963085|gb|EFT07185.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL082PA1]
 gi|315077549|gb|EFT49607.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL053PA2]
 gi|327452863|gb|EGE99517.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL092PA1]
          Length = 498

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|228469551|ref|ZP_04054544.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Porphyromonas uenonis 60-3]
 gi|228308901|gb|EEK17576.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Porphyromonas uenonis 60-3]
          Length = 342

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 29/123 (23%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGF--VNGISIDSRSIAPQEA-FFA-------IKGPHYDG 53
           ++T  D+ + I G   G          GI          +  F A       +   H   
Sbjct: 1   MYTVADIAKLIGGTLEGDGTAQLQGFAGIE----QAKAGDLSFLANMKYEPFLYTTH--- 53

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
                      A  V+V+     +       +  V +    L++L      + +     +
Sbjct: 54  -----------ASAVLVDEKFTPTQ-PCPTTLIRVANPYETLSQLMRLYVSQQEPRWTGV 101

Query: 114 TGS 116
             +
Sbjct: 102 HPT 104


>gi|269797594|ref|YP_003311494.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Veillonella parvula DSM 2008]
 gi|269094223|gb|ACZ24214.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Veillonella parvula DSM 2008]
          Length = 343

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 28/155 (18%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SIAPQEAFFAIKGPHYDGHDFILH-AV 61
           T  +L   + G  IG      +      +R       Q   FAI G       ++ H A+
Sbjct: 4   TLQELANLVGGQLIG-DESIVITE----TRSFEQAVKQSITFAI-GE------YVEHIAL 51

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-------RLRSKATIIAIT 114
            + AG V+V +++     +  +    VD+   A  ++           R      II   
Sbjct: 52  CQ-AGAVIVESEV----KNAPMAQIVVDNAKAAFAQVLEVFHPPVVVPREVHSTAIIGKN 106

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            ++GK        +   +             +IG 
Sbjct: 107 VTLGKNVAIGAYCVINDNAVIGDNVTIRPYVYIGH 141


>gi|289426865|ref|ZP_06428591.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J165]
 gi|295130331|ref|YP_003580994.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK137]
 gi|289159954|gb|EFD08132.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes J165]
 gi|291376296|gb|ADE00151.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes SK137]
 gi|313764737|gb|EFS36101.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL013PA1]
 gi|313772513|gb|EFS38479.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL074PA1]
 gi|313807243|gb|EFS45730.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA2]
 gi|313809749|gb|EFS47470.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL083PA1]
 gi|313815802|gb|EFS53516.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL059PA1]
 gi|313818289|gb|EFS56003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL046PA2]
 gi|313820051|gb|EFS57765.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA1]
 gi|313823140|gb|EFS60854.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA2]
 gi|313825583|gb|EFS63297.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL063PA1]
 gi|313827822|gb|EFS65536.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL063PA2]
 gi|313830658|gb|EFS68372.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL007PA1]
 gi|313833878|gb|EFS71592.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL056PA1]
 gi|314915228|gb|EFS79059.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA4]
 gi|314919806|gb|EFS83637.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL050PA3]
 gi|314925473|gb|EFS89304.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL036PA3]
 gi|314931821|gb|EFS95652.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL067PA1]
 gi|314955977|gb|EFT00375.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL027PA1]
 gi|314958372|gb|EFT02475.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA1]
 gi|314960276|gb|EFT04378.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA2]
 gi|314968080|gb|EFT12179.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL037PA1]
 gi|314973660|gb|EFT17756.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL053PA1]
 gi|314976253|gb|EFT20348.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL045PA1]
 gi|314978262|gb|EFT22356.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL072PA2]
 gi|314983538|gb|EFT27630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA1]
 gi|314987726|gb|EFT31817.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA2]
 gi|314990205|gb|EFT34296.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL005PA3]
 gi|315080333|gb|EFT52309.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL078PA1]
 gi|315084592|gb|EFT56568.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL027PA2]
 gi|315085928|gb|EFT57904.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL002PA3]
 gi|315088654|gb|EFT60630.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL072PA1]
 gi|315096280|gb|EFT68256.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL038PA1]
 gi|315098263|gb|EFT70239.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL059PA2]
 gi|315101046|gb|EFT73022.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL046PA1]
 gi|327325916|gb|EGE67706.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL096PA2]
 gi|327332211|gb|EGE73948.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL096PA3]
 gi|327442833|gb|EGE89487.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL013PA2]
 gi|327446204|gb|EGE92858.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL043PA2]
 gi|327447813|gb|EGE94467.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL043PA1]
 gi|327451055|gb|EGE97709.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA3]
 gi|327453590|gb|EGF00245.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL083PA2]
 gi|328753088|gb|EGF66704.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL087PA1]
 gi|328753743|gb|EGF67359.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL020PA1]
 gi|328759167|gb|EGF72783.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL025PA2]
 gi|328760587|gb|EGF74155.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
           [Propionibacterium acnes HL099PA1]
          Length = 498

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|172058258|ref|YP_001814718.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sibiricum
           255-15]
 gi|229620035|sp|B1YKE8|MURC_EXIS2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|171990779|gb|ACB61701.1| UDP-N-acetylmuramate--alanine ligase [Exiguobacterium sibiricum
           255-15]
          Length = 431

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 90/260 (34%), Gaps = 36/260 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +A    L + ++   D    L  LA   R       +AITGS GKT+T  +L+  L
Sbjct: 73  DHPEIARAKELDLTIYHYYD---FLGHLADEYRS------VAITGSHGKTSTTGLLSHVL 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH--LVRPHIAV 188
                            G+  T   +      G+ E          +  H    +P  A+
Sbjct: 124 ----------------SGITPTAFLIGDGTGAGVAEAKAFVFEACEYKRHFLYYKPDYAI 167

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +T I   H   F+GI+++ SA  E+    +    I    DD   + L+A    L      
Sbjct: 168 MTNIDFDHSDYFTGIDDVVSAFQEMAM--QVKQAIVACGDDEHLQNLQANVPIL------ 219

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQ-LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
            +G  +N DF+        + +  +V          +  G G H   N L  + I     
Sbjct: 220 YYGFGENNDFRAENATSTPDGTSFDVYLRDDFYGTFLIPGFGRHHVLNALSVIAICQYEG 279

Query: 308 ADVDTAIKALSVFHPKEGRG 327
            + +     LS F   + R 
Sbjct: 280 LNKEEVAARLSTFGGVKRRF 299


>gi|313813209|gb|EFS50923.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL025PA1]
 gi|315107076|gb|EFT79052.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL030PA1]
          Length = 498

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|152992718|ref|YP_001358439.1| hypothetical protein SUN_1127 [Sulfurovum sp. NBC37-1]
 gi|151424579|dbj|BAF72082.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 326

 Score = 41.0 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               D++   +G          +   ++    +   + FF       +  + I  AV+ G
Sbjct: 1   MKIEDIVNLTEGTLTNTPKVQAIEAATVYPSKVEHGDLFF-----SSNQEE-INKAVENG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           A  ++ + D +       I    V D+  A  KL     ++ +A 
Sbjct: 55  AYAIIYDDDSIERKDDE-IAWIKVSDIQLAAFKLIRYVIIKKEAK 98


>gi|325496645|gb|EGC94504.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia fergusonii ECD227]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|324112852|gb|EGC06828.1| FolC protein [Escherichia fergusonii B253]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|323977484|gb|EGB72570.1| FolC protein [Escherichia coli TW10509]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|318075198|ref|ZP_07982530.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Streptomyces sp.
           SA3_actF]
          Length = 81

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 399 YNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLFLFIQSSLVDGDVVVV 449
             + H+ L G    A+  AL  +        +E         ++    GD V+ 
Sbjct: 2   RRVRHLILFGETAGAIHRALIDNGLDLPTTVTEDFTDATATARALSRPGDAVLF 55


>gi|315608271|ref|ZP_07883261.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella buccae ATCC 33574]
 gi|315250052|gb|EFU30051.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella buccae ATCC 33574]
          Length = 350

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 39/119 (32%), Gaps = 21/119 (17%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA---PQEA-FFAIKGPHYDGHD 55
           M  + +T   +   ++G  I       V+  +     I    P    F A    +     
Sbjct: 1   MIKMEFTAKQIAAFVEGR-IEGDENATVSTFT----KIEEGAPGAISFLANP-KYTH--- 51

Query: 56  FI-LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           FI   A    A +V+V+ D V     +   +  V D    + +L       SK   I I
Sbjct: 52  FIYETA----ASIVLVSED-VEIDKPVKATLIRVKDARDCVARLLQMY-EASKTKKIGI 104


>gi|315108238|gb|EFT80214.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes HL030PA2]
          Length = 498

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 181 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 236

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 237 HQATNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 296

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 297 ATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 356

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 357 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 402

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 403 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 462

Query: 448 V 448
           +
Sbjct: 463 L 463


>gi|218548230|ref|YP_002382021.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia fergusonii ATCC 35469]
 gi|218355771|emb|CAQ88384.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia fergusonii ATCC 35469]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|15612031|ref|NP_223683.1| hypothetical protein jhp0966 [Helicobacter pylori J99]
 gi|4155548|gb|AAD06544.1| putative [Helicobacter pylori J99]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HALIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|312278230|gb|ADQ62887.1| Cation transporting ATPase, copper transport [Streptococcus
           thermophilus ND03]
          Length = 720

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 70/254 (27%), Gaps = 14/254 (5%)

Query: 203 IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK 262
           +              E      +         +    +   +  + +     N D     
Sbjct: 1   MSNKTHLSNYEEMMSEHHHNHEMVDMKHENHEMHNMHNMDNMHDMDNMHNMHNMDNMHDM 60

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
                +       +        H      M++ + + + ++  L      A   +  F  
Sbjct: 61  HD--MDNMHDMDNMHDMMNHGGHMMHMGDMSKKLKVAIILMIPLLLISPIAGFTILKFPG 118

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
            E         +     T           S K A+ +L  +              M   G
Sbjct: 119 SEILQLILGTIIFFYSGTPFFRGAKGELKSRKPAMMMLITMGISVAYAYSVYATIMSLYG 178

Query: 383 ELSQSFHIDLAEVLSLYNISHVW------LSGFHVLALKDALPRSIHVHYSETMDGLFLF 436
            +  +F  +LA ++ +  I H+        +G  +  L   +P+  H+   + ++     
Sbjct: 179 HMGMNFWFELATLIVIMLIGHLIEMKAIMGAGDALKDLASLVPKKAHLKSGKDVE----- 233

Query: 437 IQSSLVDGDVVVVK 450
             S L  GD+++VK
Sbjct: 234 -LSELKVGDLLLVK 246


>gi|323140918|ref|ZP_08075831.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414656|gb|EFY05462.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Phascolarctobacterium sp. YIT 12067]
          Length = 340

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQ--EAFFAIKGPHYDGHDFILHAVQK 63
           +  +L + ++G      P+  + G++     +     +  FA+       H      + K
Sbjct: 4   SVQELAEFLKGTVEHDNPELRITGVNG---LVEAGPKDISFAVPPHVEHCH------LSK 54

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
              +V+ + D          PV  V +   A   L    R + +   +
Sbjct: 55  AGVMVLSSEDPELD----GRPVIRVANPRAAFAALLELFRPQEEVERV 98


>gi|294506461|ref|YP_003570519.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
 gi|294342789|emb|CBH23567.1| UDP-N-acetylmuramate--alanine ligase [Salinibacter ruber M8]
          Length = 879

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 123/365 (33%), Gaps = 39/365 (10%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
           L    R++     + + G+ GKTTT  M  + ++                        + 
Sbjct: 511 LGELIRMKFG---VGVAGTHGKTTTTSMAGLVVAE---GGFDPTVIVGGKVTAFGSNAIT 564

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + D  + E       E       + P +AVIT+I   HL  +  +  I +A  +    +
Sbjct: 565 GEGDVLVIEAD-----EYDRTFLRLTPSLAVITSIEEDHLDVYEDLAAIQAAFTQYANSV 619

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
              G   L  DD   + +         + + ++G ++ A+ +    ++    +  +V ++
Sbjct: 620 PFFGAAILCLDDPNVQAIV----GDVERRVVTYGTTRQAEVRGENVRREGMTTRFDVVVR 675

Query: 278 GKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
           G+    +  H  G H  +N L  + +   L    +     L  F     R ++       
Sbjct: 676 GERLGTIELHVPGMHNVRNALAAVAVGQELEISFERVRDGLGTFTGVRRRFEKKGEVGG- 734

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                + + Y  +P  ++A +    Q  P        V      M   +Q+F  + A   
Sbjct: 735 ---ITVLDDYAHHPTEIEATLDAAHQGFPDR----RVVAVFQPHMYSRTQNFMDEFARSF 787

Query: 397 SLYNISHVWLS-----------GFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVD 443
             +N   + L+           G     L +   +  H  VHY      L   +Q  +  
Sbjct: 788 --FNADMLVLTDVYGAREAPIEGVTGGRLAERAEQFGHRAVHYVPEKTDLPGRLQELVGP 845

Query: 444 GDVVV 448
           GDVV+
Sbjct: 846 GDVVL 850


>gi|195952962|ref|YP_002121252.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|254766006|sp|B4U813|MURC_HYDS0 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|195932574|gb|ACG57274.1| UDP-N-acetylmuramate/alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 449

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 131/426 (30%), Gaps = 49/426 (11%)

Query: 54  HDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNK--------------LA 99
           +D I    +KGA + + +         + +    + +V   L K              LA
Sbjct: 41  NDVIKELKEKGATIYIGHDAKNVIGKEVVVYSSAISNVNEELLKAKELGLQVISRGDMLA 100

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
              R++     IAI+GS GKTTT  M++            +                  +
Sbjct: 101 DLFRMKEG---IAISGSHGKTTTTSMISHISHIAGLDPTVLIGGILQT--------FGSN 149

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
              G  EL +S   E       +   I V+T I   H+  +   E+I  A  +    +  
Sbjct: 150 AVLGKSELLISEADESDGSFLKLNSVINVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPF 209

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
            G   +N DD+    + +K H   I      G  +  +          +          K
Sbjct: 210 YGASVVNIDDTGVRSILSKIHKKIITYGIESGDFQAKNIVFNSDNTRFD----VFYKGIK 265

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +     G H   N L ++ + +++  +      AL  F       +R      +   
Sbjct: 266 LNTIELQIPGIHNVYNALASIAVSTLMEIEQPVIRDALKSFK---NAKRRIEFVGEKNTN 322

Query: 340 TLIDESYNA---------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            + D+  +             S     +++    PH   R   ++ D  ++ +      +
Sbjct: 323 LIYDDYGHHPTEIKSVYEALKSKYKDKNIVVVFQPHRYSRTYYLIDDFVDLFKSLDKVFL 382

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 S  N       G   L + + + +     Y  + + LF  +        V+V  
Sbjct: 383 LDIYGASEEN-----TFGISSLDMINKVSK-EECVYIPSKEELFDRLDEL--KDSVIVFM 434

Query: 451 SSNSCG 456
            + S G
Sbjct: 435 GAGSIG 440


>gi|89074172|ref|ZP_01160671.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
 gi|89050108|gb|EAR55634.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Photobacterium sp. SKA34]
          Length = 446

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 113/348 (32%), Gaps = 38/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITGS GK+T   ++              G+          L  +     
Sbjct: 102 FAREVDKPVVAITGSNGKSTVTSLVGEMAKEAGVNVGVGGNIGF-----AALDMLAQQHA 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    AV   ++  H+  +                 + + 
Sbjct: 157 LYVLELSSFQL----ETTTSLELTAAVYLNLSEDHMDRY------------PGGLAQYSQ 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                +D +   +      A           S   D Q         + W+ V  +    
Sbjct: 201 AKMRIFDHAKLAVFNRDDLATKPTQFSGAMTSFGFDDQDYGIVLVDGKEWLAVNGEAVMA 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +        D A +A+  +     R    + A+N+     
Sbjct: 261 VTDIALVGRHNVANCLAALALADAAGIPRDAAYRAMQRYTGLAHRC---QLAVNRHGVRW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N AS  AA++ L       EG+   ++G     G+   +   +L  +L+  N+
Sbjct: 318 VNDSKATNLASTLAALNGLQL-----EGKLHLLMG-----GDSKGAEFSELKPILADLNV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G       D +  +I V   ETM    + I  ++  GD+V++
Sbjct: 368 -QLYSFGRDRHLFNDVVDNAISV---ETMKDAMVCISRTVQSGDMVLL 411


>gi|260062949|ref|YP_003196029.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Robiginitalea biformata HTCC2501]
 gi|88784517|gb|EAR15687.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Robiginitalea biformata HTCC2501]
          Length = 340

 Score = 41.0 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 17/102 (16%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHA 60
           +T   +   ++G  I   P+  V+ +S     I   EA    F A          +  + 
Sbjct: 3   FTASQIAGILEGE-IEGNPEIAVHKLS----KIEEGEAGSLTFLANP-------KYTPYV 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
               A +++VN D      SLS  +  V+D   + +KL    
Sbjct: 51  YSTEASIIIVNKDFTPEQ-SLSTTLIKVEDAYKSFSKLLAYY 91


>gi|256751766|ref|ZP_05492639.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749294|gb|EEU62325.1| FolC bifunctional protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 427

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 14/92 (15%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-----RSIHVHYSETMDGLFLF 436
           G L       + +++       +  +         A          +V   E ++    +
Sbjct: 335 GMLKDKDTQKMLDIIVPEA-DMIITTTPISERAYKASELAQKIDKENVIPIENIEKAVKY 393

Query: 437 IQSSLVDGDVVVVKSS-------NSCGFYRLI 461
                 + D+V+   S        S    ++I
Sbjct: 394 ALDIAKEEDMVLFCGSLYMIGYVRSM-LKKVI 424


>gi|18310900|ref|NP_562834.1| FolC bifunctional protein [Clostridium perfringens str. 13]
 gi|18145582|dbj|BAB81624.1| folyl-polyglutamate synthetase [Clostridium perfringens str. 13]
          Length = 440

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFH---VLALKDALPRS----IHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H      ++D   +       V   +     
Sbjct: 339 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEDLYIKVEKYVKEVFKFKDYKEA 397

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S   D D++++  S   
Sbjct: 398 YNKAYSFTNDDDLLLICGSLYM 419


>gi|120555449|ref|YP_959800.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Marinobacter aquaeolei VT8]
 gi|120325298|gb|ABM19613.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Marinobacter aquaeolei VT8]
          Length = 341

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 13/102 (12%), Positives = 33/102 (32%), Gaps = 19/102 (18%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA---PQEA-FFAIKGPHYDGHDFILHA 60
           +   ++ +A+     G  P   + G++     +    P +  F A          +  + 
Sbjct: 6   YRLQEIAEALGASLRG-DPDIRITGLAT----LQAAVPGQISFLANP-------SYAKYL 53

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
               A  V+V++     + +    V  +D+       L+   
Sbjct: 54  KDTRASAVIVSSAAADDVPTN---VLLLDNPYLGYAHLSHWF 92


>gi|332675173|gb|AEE71989.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes 266]
          Length = 493

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 176 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 232 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 292 ATSAMKLARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 352 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 397

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 398 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 457

Query: 448 V 448
           +
Sbjct: 458 L 458


>gi|168179188|ref|ZP_02613852.1| FolC bifunctional protein [Clostridium botulinum NCTC 2916]
 gi|182669920|gb|EDT81896.1| FolC bifunctional protein [Clostridium botulinum NCTC 2916]
          Length = 429

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 25/314 (7%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           V +       +VDF + E+    LG     T+++ P +++IT+I+  H++      E   
Sbjct: 125 VAMFYYFCLKEVDFAVIEV---GLGGRLDSTNVLEPILSIITSISYDHMNILG---ETLK 178

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
                  G+ K   + +       E    K        +    +    + ++   ++   
Sbjct: 179 EITYEKAGIIKKAPVIMYPQKKEVEKNIEKVCKEKNCELIKV-EDNLINIEIEIIEKNMG 237

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
           Q   +++ +  +  +    +G H  +N +  +  +  L        K   +   K+ +  
Sbjct: 238 QQSFKLKTKEDTYNICLSLLGEHQIKNCITVILALEKLMKLGIKIEKIHIISALKKVKWP 297

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
                +N+   T+ID ++N +       I  L             +L     +G L    
Sbjct: 298 ARLEIVNKNPLTVIDGAHNID------GIESLKNNVSKYFKYNKLILI----LGILKDKQ 347

Query: 389 HIDLAEVLSLYNISHVWLS------GFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
             D+ + L       V         G     L    L  +    + E     +   +   
Sbjct: 348 VEDMIKTLVPLA-DRVLTVVPHNDRGESSKELMHIVLKHNESCEHLEDYKECYDKAKFYC 406

Query: 442 VDGDVVVVKSSNSC 455
            D D++++  S   
Sbjct: 407 EDRDMILICGSLYM 420


>gi|50842243|ref|YP_055470.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Propionibacterium acnes KPA171202]
 gi|62900680|sp|Q6A9Q4|MURD_PROAC RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|50839845|gb|AAT82512.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Propionibacterium
           acnes KPA171202]
          Length = 493

 Score = 41.0 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 79/301 (26%), Gaps = 29/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE---IASAKAEIFE 215
           + D    EL    L     L+       A +  +   HL  ++   +     +A      
Sbjct: 176 NYDVFAVELSSFQLHWSNSLSLHS----AAVLNLHQDHLEWYAHESDPLGSYAADKARIY 231

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ 275
                  ++   D +   +++      G + I     +              +++++E +
Sbjct: 232 HQVTNSCVYNVADPATEHMVEDADVVEGARAIGFTTGTPGPSMIGIVDGLIVDRAFVEQR 291

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                       +      N+   L   ++  +    A             G R      
Sbjct: 292 ATSAMELARLEDVHPFAPHNVENALAAAALTRSFGVPAPAVGQGLRDLHLGGHRIETVHQ 351

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            G  T +D+S   NP +  +++     I     G+              ++  H D    
Sbjct: 352 AGGITWVDDSKATNPHAANSSMRAFEHIVWIAGGQ--------------AKGTHFDNLVT 397

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSETM-----DGLFLFIQSSLVDGDVV 447
                +  V + G     +  +L      + V   + M                  GD V
Sbjct: 398 THAGKLRGVVVLGTDRGIIARSLAEHAPQVPVVVIDDMSREAMARAVHEAAKMARPGDTV 457

Query: 448 V 448
           +
Sbjct: 458 L 458


>gi|323967756|gb|EGB63168.1| FolC protein [Escherichia coli M863]
 gi|327252586|gb|EGE64245.1| bifunctional protein folC [Escherichia coli STEC_7v]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|323187960|gb|EFZ73255.1| bifunctional protein folC [Escherichia coli RN587/1]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|331647971|ref|ZP_08349063.1| bifunctional protein FolC [Escherichia coli M605]
 gi|281179402|dbj|BAI55732.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli SE15]
 gi|330912138|gb|EGH40648.1| dihydrofolate synthase / Folylpolyglutamate synthase [Escherichia
           coli AA86]
 gi|331043695|gb|EGI15833.1| bifunctional protein FolC [Escherichia coli M605]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|225874901|ref|YP_002756360.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225793781|gb|ACO33871.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 495

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 51/375 (13%), Positives = 98/375 (26%), Gaps = 33/375 (8%)

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR--MPVDVDFGIFELGMS 170
           ++G+ GKTTT  ML        + +A         GV                I E    
Sbjct: 112 VSGTHGKTTTTSMLAWIYEVASRRHAGFTPSFLIGGVAENFGTSFQYKPGKAFIIEGDEY 171

Query: 171 HLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                          P   ++T +   H   +  ++ + +A   +   + + G I     
Sbjct: 172 DTAFFDKGPKFMHYFPDALILTHVEFDHADIYLDLDAVKTAFRRLVNLVPRRGRIVAFDA 231

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                    K+                 D   +      +   M+ ++           +
Sbjct: 232 SPHLRDCVQKALCPVEFYGAR------PDSAWQVVDLVQQGGIMQWKVLRYGAPWAEFRM 285

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
                 N        + L       + A++         KR      Q     I + +  
Sbjct: 286 QLAGEHNAFNATA-AAALAVGQGVPLAAITEALASFRSVKRRLEVRAQVHGVTIIDDFAH 344

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           +P +++  +  L     +   R  AVL         +   H  +  +     I    +  
Sbjct: 345 HPTAIRETLRALRG--AYPGARLWAVLEPRSNTLRRNVFEHELVESLALADQIVMAQVFK 402

Query: 409 FHV----------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV--VVKSSNSCG 456
                          +     +    H    + G+   I +    GDVV  +   SN  G
Sbjct: 403 SEAVPEAERLQPERVIAALEQQGKPAHLIPGVAGIVARIAAEARPGDVVAIL---SNG-G 458

Query: 457 F----YRLINLLLEE 467
           F     +L + L E 
Sbjct: 459 FDGIYEKLPHALQER 473


>gi|218532974|ref|YP_002423790.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium chloromethanicum CM4]
 gi|218525277|gb|ACK85862.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Methylobacterium
           chloromethanicum CM4]
          Length = 455

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 123/402 (30%), Gaps = 57/402 (14%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+ G  D+     + A  A     A  +AITG+ GK+TT  +    L    +    
Sbjct: 91  QAGIPIIG--DIEIFCRERAALA---PDAPFVAITGTNGKSTTTALTAHLLRHAGRDVQM 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                 +IG  +     P      + EL    +     LT  ++P + ++  + P HL  
Sbjct: 146 G----GNIGTAILSLEPPAATRVHVVELSSFQID----LTPSLKPGVGILLNLTPDHLDR 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+ K  +  G +         DD +   +  +     I+           D+ 
Sbjct: 198 HGTMENYAAIKERLVAGADLAVIGV---DDPYCAAIAERRTGERIRLHIEGHGDAAGDYV 254

Query: 260 LRKWKQC-SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                    + + +      +++   H+      A    + LG+ S   A    +   L+
Sbjct: 255 GANGTVRGPDGAVIAEVSGIQALLGDHNLQNAAAAVAAAIRLGLSSAEIAAGLKSFPGLA 314

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                             G    +++S   N  S + A+     I          V G  
Sbjct: 315 HR---------MEPLRRIGPTLFVNDSKATNADSTEKALLAFRDI-------HWIVGGKA 358

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGLFLFI 437
            E G         LA +     ++H +L G    A    L   +      T+        
Sbjct: 359 KEGGI------EPLAPLFDR--VAHAYLIGASSEAFAATLEGRVAFTRCGTLEAATEAAA 410

Query: 438 QSSLVDGD---VVVV---KSS---------NSCGFYRLINLL 464
           +++   G    VV++    +S             F  L+  L
Sbjct: 411 RAARASGTEAPVVLLSPACASYDQFPNFEVRGDRFRTLVAAL 452


>gi|82777726|ref|YP_404075.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella dysenteriae Sd197]
 gi|81241874|gb|ABB62584.1| dihydrofolate:folylpolyglutamate synthetase [Shigella dysenteriae
           Sd197]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|317178660|dbj|BAJ56448.1| hypothetical protein HPF30_0351 [Helicobacter pylori F30]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|317177787|dbj|BAJ55576.1| hypothetical protein HPF16_0979 [Helicobacter pylori F16]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|309702627|emb|CBJ01956.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Escherichia coli ETEC H10407]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|308062315|gb|ADO04203.1| hypothetical protein HPCU_05270 [Helicobacter pylori Cuz20]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|331653759|ref|ZP_08354760.1| bifunctional protein FolC [Escherichia coli M718]
 gi|331048608|gb|EGI20684.1| bifunctional protein FolC [Escherichia coli M718]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|294491600|gb|ADE90356.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           IHE3034]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|284922303|emb|CBG35388.1| bifunctional FolC protein [includes: folylpolyglutamate synthase;
           dihydrofolate synthase] [Escherichia coli 042]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|261839773|gb|ACX99538.1| hypothetical protein HPKB_0964 [Helicobacter pylori 52]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|261838372|gb|ACX98138.1| hypothetical protein KHP_0941 [Helicobacter pylori 51]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|210135199|ref|YP_002301638.1| hypothetical protein HPP12_1006 [Helicobacter pylori P12]
 gi|210133167|gb|ACJ08158.1| hypothetical protein HPP12_1006 [Helicobacter pylori P12]
          Length = 339

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|26248704|ref|NP_754744.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli CFT073]
 gi|227887375|ref|ZP_04005180.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 83972]
 gi|300983539|ref|ZP_07176633.1| protein FolC [Escherichia coli MS 45-1]
 gi|301049074|ref|ZP_07196058.1| protein FolC [Escherichia coli MS 185-1]
 gi|306814573|ref|ZP_07448735.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli NC101]
 gi|26109109|gb|AAN81312.1|AE016763_271 FolC bifunctional protein [Escherichia coli CFT073]
 gi|222034071|emb|CAP76812.1| FolC bifunctional protein [Escherichia coli LF82]
 gi|227835725|gb|EEJ46191.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 83972]
 gi|300299121|gb|EFJ55506.1| protein FolC [Escherichia coli MS 185-1]
 gi|300408501|gb|EFJ92039.1| protein FolC [Escherichia coli MS 45-1]
 gi|305851967|gb|EFM52419.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli NC101]
 gi|307554377|gb|ADN47152.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli ABU 83972]
 gi|312946934|gb|ADR27761.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292278|gb|EFU51630.1| protein FolC [Escherichia coli MS 153-1]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|61680167|pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
 gi|61680173|pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
          Length = 422

 Score = 41.0 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|300928486|ref|ZP_07144012.1| protein FolC [Escherichia coli MS 187-1]
 gi|300463481|gb|EFK26974.1| protein FolC [Escherichia coli MS 187-1]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|269795576|ref|YP_003315031.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
 gi|269097761|gb|ACZ22197.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Sanguibacter
           keddieii DSM 10542]
          Length = 487

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 61/363 (16%), Positives = 110/363 (30%), Gaps = 34/363 (9%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
            A  +A+TG+ GKTTT EML   L +         +   ++G PL  A +  +++    E
Sbjct: 101 PAPWLALTGTNGKTTTVEMLLSVLEA----DGRRAAAVGNVGRPLVEAVVDPEIEVLAIE 156

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L    L         + P +  +  +A  HL      EE A+AK ++F   +      + 
Sbjct: 157 LSSFQLHFTS----SMSPLVGAVLNVAADHLDWHGTFEEYAAAKGKVFHQAQVACVYNVA 212

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
              +   +  A           + G    ++  L +   C     +      +       
Sbjct: 213 DPVTERLVQDADVVDGARAVGVTVGAPGRSELGLVEGVLCDRAFHLPADDPRRHQSAAEL 272

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF----HPKEGRGKRYRCALNQGFFTLI 342
           G    +         + S +  D   A      F           + +R   ++      
Sbjct: 273 GTLDDLGHLAGPDGSVPSHVVFDALAAAAMARAFGVEARAVREGLRAFRPGAHRIVTVAQ 332

Query: 343 DESYNA-------NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
             +          + +    A +  + +     G  + V G + + G        D A+ 
Sbjct: 333 VPAVEGEGTVAFVDDSKATNAHAAAASLGGFAPGTVVWVAGGLAK-GATFDDLVRDRADR 391

Query: 396 LSLYNISHVWLSGFHVLALKDALPRS---IHVHYSE------TMDGLFLFIQSSLVDGDV 446
           L       V L G     L DAL R    + V   +       M             GD 
Sbjct: 392 LRA-----VVLIGTDHRGLADALARHAGEVPVVEVDPGDTGTVMQRAVQTAHQMARPGDT 446

Query: 447 VVV 449
           V++
Sbjct: 447 VLL 449


>gi|150016657|ref|YP_001308911.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903122|gb|ABR33955.1| FolC bifunctional protein [Clostridium beijerinckii NCIMB 8052]
          Length = 437

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-------DALPRSIHVHYSETMDGL 433
           +G L+     ++ + ++      V+    H    +       + L  + +    E+ +  
Sbjct: 342 LGILADKQVKEMVQEITPLA-EKVYALTPHSERAELSENLKEEILNYNSNTIALESYEEA 400

Query: 434 FLFIQSSLVDGDVVVVKSSNSC--GFYRLINLLLEEFP 469
           F        + D++VV  S        ++   +  +FP
Sbjct: 401 FSLALKEAKEEDLIVVSGSLYMIGDMRKI---IRNKFP 435


>gi|332992507|gb|AEF02562.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Alteromonas sp. SN2]
          Length = 439

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 38/328 (11%), Positives = 86/328 (26%), Gaps = 12/328 (3%)

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
                    K       +Y     +          VD  + E+    LG      +++ P
Sbjct: 107 FCRAFELIEKARGDITLTYFEFGTLAAMKMMQDWGVDVAVLEV---GLGGRLDAANILDP 163

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            +A+ITTI   H        +   A A    G+ +     +  +      L+     L +
Sbjct: 164 DLAIITTIDLDHQDWLG---DTREAIAREKAGIMRKNGKAVIGELLPPSSLRDVVSELDV 220

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++       +         +  S         +                     +  
Sbjct: 221 DARWAQQDFFIVENTAPNNSLSASTSRTWQWKGKHTEFTQLPYPHIPQQNVSTALAALEL 280

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +     + AIK +       GR +              +                     
Sbjct: 281 LNLLPDEAAIKHIIANTRLPGRQQEISQNPLVVVDVAHNPQATKAMREWLKRYPANKIRV 340

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G  +  +++  +  +  L+  ++  LA            L+G    AL DA     ++
Sbjct: 341 VAGMLKDKSIVETLAPLSSLNAQWY--LASTSGPRGCDADVLAG----ALLDAQLDKSYI 394

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                +   +   ++   +G++++V  S
Sbjct: 395 KTFSDVTNAYKAARNDYQEGELILVFGS 422


>gi|295397238|ref|ZP_06807336.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
 gi|294974519|gb|EFG50248.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus viridans ATCC
           11563]
          Length = 447

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 101/363 (27%), Gaps = 44/363 (12%)

Query: 94  ALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
            L +L          T +AITGS GKT+T  ++   +  +  T   IG            
Sbjct: 96  FLGELIKDY------TSVAITGSHGKTSTTGLMAHVMRGLHPTNFLIGDGTGAG------ 143

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
                D ++ + E        + +      P  A+ T I   H   +  I+++ +A    
Sbjct: 144 ---QEDAEYFVLEADEYRKHFLAYH-----PDYAIFTNIDFDHPDYYENIDQVFAANTTF 195

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWME 273
              ++K    +          L+  +    I   Y   +  +           ++ S  +
Sbjct: 196 AHQVKKKVIAYGGD-----AYLRQFADQSDIDVWYYGLEGGDNHIVASNVDLATDGSHFD 250

Query: 274 -VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
              +            G H   N L  +G   +     D   + L  F   + R    + 
Sbjct: 251 VHVMGEFYGHFDIPTFGEHNVMNALSVIGFCYLENFPADRVAEELRTFGGVKRRFSEKKI 310

Query: 333 ALNQGFFTLIDE--SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE----MGELSQ 386
                            A   + +        +S          +  M E    +     
Sbjct: 311 GDMTLIDDYAHHPSEIKATINAARQKYPNKKIVSVFQPHTFSRTIALMDEFAGALDLSDD 370

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
            +  ++       +   V      V  L + + + + V   E +  L  +        D 
Sbjct: 371 VYLCEIFASAREKDNKQV-----SVSDLANKVTKPVQVLPLENVSPLLDY-------DDA 418

Query: 447 VVV 449
           V++
Sbjct: 419 VMI 421


>gi|293410672|ref|ZP_06654248.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli B354]
 gi|331663832|ref|ZP_08364742.1| bifunctional protein FolC [Escherichia coli TA143]
 gi|291471140|gb|EFF13624.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli B354]
 gi|331059631|gb|EGI31608.1| bifunctional protein FolC [Escherichia coli TA143]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|167564201|ref|ZP_02357117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           oklahomensis EO147]
          Length = 511

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  +       V L G   LA++ AL    + +    T++       + 
Sbjct: 409 GDGKGQDFEPLAAPV-ERWCRAVMLIGRDALAIRAALADTGVPLADHATLEAAVRAASTL 467

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 468 AQSGDAVLL 476


>gi|160896938|ref|YP_001562520.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
 gi|160362522|gb|ABX34135.1| UDP-N-acetylmuramate [Delftia acidovorans SPH-1]
          Length = 479

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 53/394 (13%), Positives = 102/394 (25%), Gaps = 50/394 (12%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGV---------PL 151
                   ++A+ G+ GKTTT  ML   L          +G      GV         P 
Sbjct: 109 HHPSCPRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPLDFGVSARLGASSRPT 168

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                       + E                  RP  AV+  +   H   F  +  I   
Sbjct: 169 PGQGPAGAEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLGAIERQ 228

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF-------GKSKNADFQLRK 262
              +   +  +G + +N  +     +  +     + +  S        G     D   R 
Sbjct: 229 FHHLVRTVPASGRLVVNGIEESITRVLHQGCWSEVSSFGSVVSDFSAQGDPGAFDVLHRG 288

Query: 263 WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHP 322
            K    +  +  +    +         +           +           ++ ++    
Sbjct: 289 HKVARLEWALTGEHNQLNALAAIAAAEHVGVTPAQACEALARFQNVKRRMELRGMAGGVS 348

Query: 323 KEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMG 382
                  +         T I  + +     + +   +L+   P     +   LG M    
Sbjct: 349 VYDDFAHH--------PTAIRTTLDGLRRKLGSQARILAVFEPRSNTMK---LGTMKSQL 397

Query: 383 ELSQSFHIDLAEVLSLYNISHVWL--SGFHVLALKD----ALPRSIHVHYSETMDGLFLF 436
             +              +   V+   +G    A +      +        +  +D L   
Sbjct: 398 PWALE------------SADLVFCHTAGLDWDAAEALRPLGVGAGHKAQVAADIDTLIGQ 445

Query: 437 IQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           I+++   GD V V  SN  GF  +   LL    A
Sbjct: 446 IRAAARTGDHV-VCMSNG-GFGGIHPKLLAALQA 477


>gi|121595934|ref|YP_987830.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
 gi|120608014|gb|ABM43754.1| UDP-N-acetylmuramate [Acidovorax sp. JS42]
          Length = 474

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 52/387 (13%), Positives = 107/387 (27%), Gaps = 32/387 (8%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI----------KKTYACIGSYNN 145
             LA          ++A+ G+ GKTTT  ML   L                   + +   
Sbjct: 101 QWLAEHVLQ--GRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPMNFGVSARLG 158

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGI 203
               PL            + E                  RP  AV+  +   H   F  +
Sbjct: 159 APVRPLAGPGPLATAPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFDDL 218

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            +I      +   +  +G + +N  +     +       G+    +      A  +   +
Sbjct: 219 GQIERQFHHLVRTVPPSGRVVVNGLEESLARVLHAGCWSGVANFGTAVSDFGAQGEPHDF 278

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
           +       +       +           +A    + +              +AL+ F   
Sbjct: 279 EVLQRGRTVARVQWALTGVHNQLNALAAIAAAEHVGVTPAQA--------AEALARFENV 330

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
           + R +          +    + +  +P +++  +  L +        R  +L  + E   
Sbjct: 331 KRRMELRGTVRGIAVY----DDFAHHPTALRTTLDGLRRRVGPKGEGRGRILA-VFEPRS 385

Query: 384 LSQSF---HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSS 440
            +         L   L   +++    +G    A     P       +  +  L   I++ 
Sbjct: 386 NTMKLGTMKAQLPWALEPADLAFCHTAGLDWDAAAALAPMGARAQTAGDLPTLVGQIRAV 445

Query: 441 LVDGDVVVVKSSNSCGFYRLINLLLEE 467
           +  GD + V  SN   F  +   LL E
Sbjct: 446 VQPGDHI-VCMSNGS-FGGVHAQLLAE 470


>gi|91211612|ref|YP_541598.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UTI89]
 gi|117624505|ref|YP_853418.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli APEC O1]
 gi|215487528|ref|YP_002329959.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218559228|ref|YP_002392141.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli S88]
 gi|218690475|ref|YP_002398687.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli ED1a]
 gi|218700791|ref|YP_002408420.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli IAI39]
 gi|237704794|ref|ZP_04535275.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia sp. 3_2_53FAA]
 gi|256017527|ref|ZP_05431392.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella sp. D9]
 gi|300918513|ref|ZP_07135106.1| protein FolC [Escherichia coli MS 115-1]
 gi|300924585|ref|ZP_07140547.1| protein FolC [Escherichia coli MS 182-1]
 gi|300936894|ref|ZP_07151781.1| protein FolC [Escherichia coli MS 21-1]
 gi|312967615|ref|ZP_07781830.1| bifunctional protein folC [Escherichia coli 2362-75]
 gi|331658398|ref|ZP_08359360.1| bifunctional protein FolC [Escherichia coli TA206]
 gi|332278534|ref|ZP_08390947.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Shigella sp. D9]
 gi|91073186|gb|ABE08067.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli UTI89]
 gi|115513629|gb|ABJ01704.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli APEC O1]
 gi|215265600|emb|CAS10003.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O127:H6 str. E2348/69]
 gi|218365997|emb|CAR03741.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli S88]
 gi|218370777|emb|CAR18590.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli IAI39]
 gi|218428039|emb|CAR08958.2| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli ED1a]
 gi|226901160|gb|EEH87419.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia sp. 3_2_53FAA]
 gi|300414327|gb|EFJ97637.1| protein FolC [Escherichia coli MS 115-1]
 gi|300419216|gb|EFK02527.1| protein FolC [Escherichia coli MS 182-1]
 gi|300458005|gb|EFK21498.1| protein FolC [Escherichia coli MS 21-1]
 gi|307626148|gb|ADN70452.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UM146]
 gi|312287812|gb|EFR15717.1| bifunctional protein folC [Escherichia coli 2362-75]
 gi|315288289|gb|EFU47688.1| protein FolC [Escherichia coli MS 110-3]
 gi|315298150|gb|EFU57414.1| protein FolC [Escherichia coli MS 16-3]
 gi|320196183|gb|EFW70807.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli WV_060327]
 gi|320199906|gb|EFW74495.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli EC4100B]
 gi|323952108|gb|EGB47982.1| FolC protein [Escherichia coli H252]
 gi|323955886|gb|EGB51640.1| FolC protein [Escherichia coli H263]
 gi|324009235|gb|EGB78454.1| protein FolC [Escherichia coli MS 57-2]
 gi|331056646|gb|EGI28655.1| bifunctional protein FolC [Escherichia coli TA206]
 gi|332100886|gb|EGJ04232.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Shigella sp. D9]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|291283556|ref|YP_003500374.1| Tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O55:H7 str. CB9615]
 gi|209764818|gb|ACI80721.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764824|gb|ACI80724.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|290763429|gb|ADD57390.1| Tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O55:H7 str. CB9615]
 gi|320641143|gb|EFX10622.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. G5101]
 gi|320646358|gb|EFX15281.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H- str. 493-89]
 gi|320651628|gb|EFX20008.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H- str. H 2687]
 gi|320657380|gb|EFX25182.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662915|gb|EFX30239.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667659|gb|EFX34570.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|316933184|ref|YP_004108166.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
 gi|315600898|gb|ADU43433.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhodopseudomonas
           palustris DX-1]
          Length = 465

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 56/377 (14%), Positives = 108/377 (28%), Gaps = 47/377 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
            +A  +AITG+ GK+TT  ++   L               +IG  +     P D    + 
Sbjct: 112 PRAPFVAITGTNGKSTTTALIAHLLREAGWD----TQLGGNIGTAILSLEPPKDGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPTVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAIV 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD F      +    G + +    +               +      +     +  + 
Sbjct: 224 GVDDEFGRAAADRIERAGNRVV----RMSVQGPVTSGITADLDAIRRVEEGASAEVAKLG 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N        + + A   +  +         G   R      QG    +++S
Sbjct: 280 GIGSLRGLHNAQNAAAAAAAVLALGVSPEQLQQGLRSFPGLAHRMEQVGRQGTTLFVNDS 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A++   +I     G+     G +  + E                 I   +
Sbjct: 340 KATNADAAAKALASFGEIFWIAGGKPKT--GGIESLAEYFPR-------------IRKAY 384

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQS------SLVDGDVVVV---KSS---- 452
           L G         L   +    SET++                    VV++    +S    
Sbjct: 385 LIGQAAQEFAATLKGRVPYEISETLEAAVPAAARDAAASGLTEP--VVLLSPACASFDQF 442

Query: 453 -----NSCGFYRLINLL 464
                    F  L+  L
Sbjct: 443 RNFEIRGTRFRELVTAL 459


>gi|194288895|ref|YP_002004802.1| cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
 gi|193222730|emb|CAQ68733.1| Cyanophycin synthetase [Cupriavidus taiwanensis LMG 19424]
          Length = 856

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  +++                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHIMATSGLRMGMTGTDGVYIQGERIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +        S I   E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLSYINSVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +            +   +   A  + +  +        
Sbjct: 588 IVQNVAPHGMAVLNAADPMVVRMADACPGSVTFFAHDPDQPAMATHRAQGKRVVFVDGAE 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   EV++    + +  +G      +N + ++     L  D     + L+ F    
Sbjct: 648 IVAGEGDAEVRIALAEIPLTRNGTIGFQVENAMSSIAAAWALGIDWSVIRRGLATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP ++ A  + +  I      R + + G      + 
Sbjct: 708 QTAPGRFNVFDYRGATLIAD-YGHNPDAILALCNAIESIPAK--RRVVVISGAGDRRDDD 764

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            +     L  V        V L           G  +  L++ L  +      E + G  
Sbjct: 765 IRRQTQILGGV-----FDEVVLYQDQCQRGRADGEVLALLREGLQGAQRASQVEEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  S L  GD+ ++
Sbjct: 820 LAIDTALSHLQPGDLCLI 837


>gi|16130250|ref|NP_416818.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89109135|ref|AP_002915.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. W3110]
 gi|157161803|ref|YP_001459121.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli HS]
 gi|170081931|ref|YP_001731251.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188496304|ref|ZP_03003574.1| FolC bifunctional protein [Escherichia coli 53638]
 gi|194436095|ref|ZP_03068197.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           101-1]
 gi|238901490|ref|YP_002927286.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BW2952]
 gi|253772761|ref|YP_003035592.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162324|ref|YP_003045432.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli B str. REL606]
 gi|256022000|ref|ZP_05435865.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia sp. 4_1_40B]
 gi|300948536|ref|ZP_07162630.1| protein FolC [Escherichia coli MS 116-1]
 gi|300956417|ref|ZP_07168708.1| protein FolC [Escherichia coli MS 175-1]
 gi|301023562|ref|ZP_07187326.1| protein FolC [Escherichia coli MS 196-1]
 gi|301647582|ref|ZP_07247379.1| protein FolC [Escherichia coli MS 146-1]
 gi|307138980|ref|ZP_07498336.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli H736]
 gi|312973425|ref|ZP_07787597.1| bifunctional protein folC [Escherichia coli 1827-70]
 gi|331642955|ref|ZP_08344090.1| bifunctional protein FolC [Escherichia coli H736]
 gi|2506433|sp|P08192|FOLC_ECOLI RecName: Full=Bifunctional protein folC; Includes: RecName:
           Full=Folylpolyglutamate synthase; AltName:
           Full=Folylpoly-gamma-glutamate synthetase; Short=FPGS;
           AltName: Full=Tetrahydrofolylpolyglutamate synthase;
           Short=Tetrahydrofolate synthase; Includes: RecName:
           Full=Dihydrofolate synthase
 gi|1788654|gb|AAC75375.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1799699|dbj|BAA16164.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K12 substr. W3110]
 gi|157067483|gb|ABV06738.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           HS]
 gi|169889766|gb|ACB03473.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli str. K-12 substr. DH10B]
 gi|188491503|gb|EDU66606.1| FolC bifunctional protein [Escherichia coli 53638]
 gi|194424823|gb|EDX40808.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           101-1]
 gi|238860078|gb|ACR62076.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BW2952]
 gi|242377948|emb|CAQ32717.1| bifunctional folypolyglutamate synthetase / dihydrofolate
           synthetase [Escherichia coli BL21(DE3)]
 gi|253323805|gb|ACT28407.1| FolC bifunctional protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253974225|gb|ACT39896.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli B str. REL606]
 gi|253978392|gb|ACT44062.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli BL21(DE3)]
 gi|260448591|gb|ACX39013.1| FolC bifunctional protein [Escherichia coli DH1]
 gi|299880797|gb|EFI89008.1| protein FolC [Escherichia coli MS 196-1]
 gi|300316766|gb|EFJ66550.1| protein FolC [Escherichia coli MS 175-1]
 gi|300451946|gb|EFK15566.1| protein FolC [Escherichia coli MS 116-1]
 gi|301074272|gb|EFK89078.1| protein FolC [Escherichia coli MS 146-1]
 gi|310332020|gb|EFP99255.1| bifunctional protein folC [Escherichia coli 1827-70]
 gi|315136950|dbj|BAJ44109.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli DH1]
 gi|315615584|gb|EFU96216.1| bifunctional protein folC [Escherichia coli 3431]
 gi|323936605|gb|EGB32892.1| FolC protein [Escherichia coli E1520]
 gi|323940988|gb|EGB37175.1| FolC protein [Escherichia coli E482]
 gi|323961388|gb|EGB56999.1| FolC protein [Escherichia coli H489]
 gi|323973101|gb|EGB68294.1| FolC protein [Escherichia coli TA007]
 gi|331039753|gb|EGI11973.1| bifunctional protein FolC [Escherichia coli H736]
 gi|332344097|gb|AEE57431.1| bifunctional protein FolC [Escherichia coli UMNK88]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.46,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|301024147|ref|ZP_07187857.1| protein FolC [Escherichia coli MS 69-1]
 gi|331673817|ref|ZP_08374580.1| bifunctional protein FolC [Escherichia coli TA280]
 gi|331683987|ref|ZP_08384583.1| bifunctional protein FolC [Escherichia coli H299]
 gi|300396691|gb|EFJ80229.1| protein FolC [Escherichia coli MS 69-1]
 gi|331069090|gb|EGI40482.1| bifunctional protein FolC [Escherichia coli TA280]
 gi|331078939|gb|EGI50141.1| bifunctional protein FolC [Escherichia coli H299]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|154252861|ref|YP_001413685.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156811|gb|ABS64028.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Parvibaculum
           lavamentivorans DS-1]
          Length = 467

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 59/399 (14%), Positives = 105/399 (26%), Gaps = 52/399 (13%)

Query: 58  LHAVQKG-----AG-------LVVVNTDMVASIGSLSIPVFGVDDVLGALN-------KL 98
             A + G     A          +V +  +        P         A         +L
Sbjct: 46  AEAAKAGFTLSDASGWDWKTFAALVLSPGIPLTHPEPHPAVL---TAKAAGVEVIGDIEL 102

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV 158
              A   + A ++AITG+ GK+TT  ++   +             +  +G  +  A + +
Sbjct: 103 FQRAVTGTGAKVVAITGTNGKSTTTALIGHMVRR--------CGGDAQVGGNIGKAVLEL 154

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +         +        L   + PHIAV+  I P H+     +E  A  KA IF    
Sbjct: 155 EAPSASSVYVVEVSSYQIDLAPSLAPHIAVLLNITPDHIDRHGTVEHYADVKARIFARQT 214

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKT--IYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
              T  +  D+     +  +  A  ++     S GK+ +                   + 
Sbjct: 215 AADTAVIGIDERRSSDICTRESARRVEKVVPVSVGKALSRGVYALDGVLYDSTGTQTAKA 274

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                     G             G             +  + F    G   R       
Sbjct: 275 GDLRTIKTLAGAHNWQNAAAAYAAGRAL-----GYQRERIFAAFESFPGLAHRMEIVAEA 329

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +++S   N  +   A+     I     G+         E G  S           
Sbjct: 330 EGVRFVNDSKATNADAASKALGTYDNIYWIAGGKA-------KEGGIESLEPWFP----- 377

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
               I   +L G    +  + L   +      T+D    
Sbjct: 378 ---RIRRAYLIGDAAKSFGETLKGKVEAVQCGTLDRAVE 413


>gi|24113687|ref|NP_708197.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 2a str. 301]
 gi|30063741|ref|NP_837912.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 2a str. 2457T]
 gi|24052755|gb|AAN43904.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2a str. 301]
 gi|30041996|gb|AAP17722.1| dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2a str. 2457T]
 gi|281601756|gb|ADA74740.1| Dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Shigella flexneri 2002017]
 gi|313651139|gb|EFS15538.1| bifunctional protein folC [Shigella flexneri 2a str. 2457T]
 gi|332755365|gb|EGJ85729.1| bifunctional protein folC [Shigella flexneri K-671]
 gi|332756315|gb|EGJ86666.1| bifunctional protein folC [Shigella flexneri 2747-71]
 gi|332766135|gb|EGJ96345.1| folC bifunctional protein [Shigella flexneri 2930-71]
 gi|333016277|gb|EGK35608.1| bifunctional protein folC [Shigella flexneri K-304]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|333001460|gb|EGK21028.1| bifunctional protein folC [Shigella flexneri VA-6]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|296116438|ref|ZP_06835052.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977031|gb|EFG83795.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 483

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 79/417 (18%), Positives = 131/417 (31%), Gaps = 52/417 (12%)

Query: 53  GHDFILHAVQKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD    A   GA  VVV           + +    +  V  V  A   LA   RLR   
Sbjct: 59  GHD----AANLGAAQVVVTSTAVQRDNPEVLAARARLIPV--VRRA-EMLAELMRLRWS- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  ++   L + K     I                    D+ + E  
Sbjct: 111 --VAVGGTHGKTTTTSLVAAVLEAAKLDPTVINGGIIE---AYGTNTRMGSGDWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I V+T + P HL ++   E + +A  +    +   G   L  D
Sbjct: 166 ES-----DGSFLRLPSVITVVTNMDPEHLDHWGTEEAMQAAYDQFVSNIPFYGFAVLCID 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSM 281
               + +  +   L    I ++G S  AD +  K              +        ++ 
Sbjct: 221 HPAVQQMIPR---LSDHRIVTYGFSPQADIRAEKVITDKLGATFEVVVTSRNRNRSRRAG 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G+H  QN L  + +   +  D  T   A + F   + R  R            
Sbjct: 278 PFRLPMLGHHNVQNALAAIAVGVEMEIDDATIRSAFAAFKGVKRRFTRTGETGG----IT 333

Query: 342 IDESYNANPASMKAA---------ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           + + Y  +P  + A           +V++ + PH   R  ++  + C     + +  I  
Sbjct: 334 VIDDYGHHPVEIAAVLKAARQAGANNVIAVMQPHRYSRLQSLFNEFCTCMNDAGTVIIAD 393

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
                   I      G    AL + L    H         + L   I +    GD V
Sbjct: 394 VYAAGEQPIE-----GMDRDALVEGLRERGHRSVVPLPGPEHLAEMINAIARPGDFV 445


>gi|218705845|ref|YP_002413364.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli UMN026]
 gi|293405781|ref|ZP_06649773.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli FVEC1412]
 gi|298381464|ref|ZP_06991063.1| folC [Escherichia coli FVEC1302]
 gi|300896997|ref|ZP_07115476.1| protein FolC [Escherichia coli MS 198-1]
 gi|218432942|emb|CAR13836.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli UMN026]
 gi|291427989|gb|EFF01016.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli FVEC1412]
 gi|298278906|gb|EFI20420.1| folC [Escherichia coli FVEC1302]
 gi|300359178|gb|EFJ75048.1| protein FolC [Escherichia coli MS 198-1]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|167571351|ref|ZP_02364225.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           oklahomensis C6786]
          Length = 503

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  +       V L G   LA++ AL    + +    T++       + 
Sbjct: 401 GDGKGQDFEPLAAPV-ERWCRAVMLIGRDALAIRAALADTGVPLADHATLEAAVRAASTL 459

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 460 AQSGDAVLL 468


>gi|124021741|ref|YP_001016048.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9303]
 gi|166224716|sp|A2C5M3|MURC_PROM3 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|123962027|gb|ABM76783.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9303]
          Length = 488

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 67/405 (16%), Positives = 134/405 (33%), Gaps = 46/405 (11%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKT 120
           LVV++T +  S   L       + +    D+L AL +             IA+ GS GKT
Sbjct: 84  LVVISTAIPKSNPELKAAKLSQLKILHRSDLLAALIQ---------AQPSIAVAGSHGKT 134

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  +LT  L++  +    +                       + E   S          
Sbjct: 135 TTSTLLTTLLATTDQDPTAVIGGVVPY---YDSNGHAGKGRLLVAEADES-----DGSLV 186

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
             +  + VIT +   H  +++ ++E+ +       G  +    F         +LK    
Sbjct: 187 KFQATLGVITNLELDHTDHYADLDELINTMKRFGRGCRRLLANF------DCPILKEHFD 240

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNMLMT 299
           A      +S   S   DF         +Q+  ++  QGK M ++     G H   N +  
Sbjct: 241 ATA---WWSVKTSAGVDFAALPICLNGDQTIADIYEQGKRMGQITLPMPGLHNLSNAMAA 297

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +    +     +   + L+   P   R         +          +   A++  A  +
Sbjct: 298 IAACRLAGLSFEDLQQGLADLQPPGRRFDFRGTWEGRQIVDDYAHHPSEVSATLAMARLI 357

Query: 360 LSQISPHGEGRRIAVLGDMC-EMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHVL--A 413
           ++            +L          +  F  + A  L   +   ++ V+ +G + +  A
Sbjct: 358 VTSGRSQLPSPPKRILAVFQPHRYSRTNEFLYEFARALGEADAVLLAPVYSAGENPIQGA 417

Query: 414 LKDALPRSIHVHY-------SETMDGLFLFIQSSLVDGDVVVVKS 451
             ++L  +I + +       +E  + L L +Q   + GD+V+   
Sbjct: 418 TSESLANAIRIQHPNLPVAVAENFNQLTLLVQKHSLKGDLVLAMG 462


>gi|110806280|ref|YP_689800.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri 5 str. 8401]
 gi|193062465|ref|ZP_03043560.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E22]
 gi|194429447|ref|ZP_03061970.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B171]
 gi|260844902|ref|YP_003222680.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O103:H2 str. 12009]
 gi|260856359|ref|YP_003230250.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O26:H11 str. 11368]
 gi|260869037|ref|YP_003235439.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O111:H- str. 11128]
 gi|293446652|ref|ZP_06663074.1| folC [Escherichia coli B088]
 gi|300818081|ref|ZP_07098293.1| protein FolC [Escherichia coli MS 107-1]
 gi|300822190|ref|ZP_07102332.1| protein FolC [Escherichia coli MS 119-7]
 gi|307311124|ref|ZP_07590768.1| FolC bifunctional protein [Escherichia coli W]
 gi|309793198|ref|ZP_07687626.1| protein FolC [Escherichia coli MS 145-7]
 gi|331678261|ref|ZP_08378936.1| bifunctional protein FolC [Escherichia coli H591]
 gi|110615828|gb|ABF04495.1| dihydrofolate synthetase [Shigella flexneri 5 str. 8401]
 gi|192932131|gb|EDV84730.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E22]
 gi|194412508|gb|EDX28807.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B171]
 gi|195183054|dbj|BAG66614.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O111:H-]
 gi|257755008|dbj|BAI26510.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O26:H11 str. 11368]
 gi|257760049|dbj|BAI31546.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O103:H2 str. 12009]
 gi|257765393|dbj|BAI36888.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli O111:H- str. 11128]
 gi|291323482|gb|EFE62910.1| folC [Escherichia coli B088]
 gi|300525320|gb|EFK46389.1| protein FolC [Escherichia coli MS 119-7]
 gi|300529225|gb|EFK50287.1| protein FolC [Escherichia coli MS 107-1]
 gi|306908630|gb|EFN39127.1| FolC bifunctional protein [Escherichia coli W]
 gi|308123484|gb|EFO60746.1| protein FolC [Escherichia coli MS 145-7]
 gi|315061608|gb|ADT75935.1| bifunctional folylpolyglutamate synthase/dihydrofolate synthase
           [Escherichia coli W]
 gi|323156466|gb|EFZ42621.1| bifunctional protein folC [Escherichia coli EPECa14]
 gi|323161581|gb|EFZ47467.1| bifunctional protein folC [Escherichia coli E128010]
 gi|323171998|gb|EFZ57642.1| bifunctional protein folC [Escherichia coli LT-68]
 gi|323176759|gb|EFZ62349.1| bifunctional protein folC [Escherichia coli 1180]
 gi|323184365|gb|EFZ69741.1| bifunctional protein folC [Escherichia coli 1357]
 gi|323377811|gb|ADX50079.1| FolC bifunctional protein [Escherichia coli KO11]
 gi|331074721|gb|EGI46041.1| bifunctional protein FolC [Escherichia coli H591]
 gi|332754965|gb|EGJ85330.1| bifunctional protein folC [Shigella flexneri 4343-70]
 gi|333001980|gb|EGK21546.1| bifunctional protein folC [Shigella flexneri K-218]
 gi|333002684|gb|EGK22244.1| bifunctional protein folC [Shigella flexneri K-272]
 gi|333016568|gb|EGK35898.1| bifunctional protein folC [Shigella flexneri K-227]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  L    +    +++   +    +     D V+V  S
Sbjct: 364 TAEQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|254779594|ref|YP_003057700.1| hypothetical protein HELPY_1010 [Helicobacter pylori B38]
 gi|254001506|emb|CAX29524.1| Conserved hypothetical protein [Helicobacter pylori B38]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDKDVAWIKLKDIEHSLNHLFKF 91


>gi|254430681|ref|ZP_05044384.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
 gi|197625134|gb|EDY37693.1| UDP-N-acetylmuramate--alanine ligase [Cyanobium sp. PCC 7001]
          Length = 478

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 63/412 (15%), Positives = 126/412 (30%), Gaps = 56/412 (13%)

Query: 65  AGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           A LVV+++ +  +   L       + +    DVL AL +             IA+ GS G
Sbjct: 75  APLVVISSAVPETNPELKEARRVGLKICHRSDVLAALIQ---------NQASIAVAGSHG 125

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KTTT  ++   L++   T     +    I                + E   S        
Sbjct: 126 KTTTSSLIATLLAA---TGHDPTAVIGGIVPAFGSNGRSGKGRLLVAEADES-----DGS 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +P + V+T +   H  ++  +E +            +              +L+  
Sbjct: 178 LVKFKPGLGVLTNVELDHTDHYPDLEALIGTLRRFAGRSGRLLAN------HDCAILREH 231

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-EVVHHGIGYHMAQNML 297
             A   +  +S   ++  DF     ++  + +  E   QG+ +  +     G H   N +
Sbjct: 232 FDA---QHWWSITTTEGIDFAAVALEERGDGTTAEFYEQGQPVGRICLPLPGRHNLSNAV 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA-- 355
             L    +         +A++   P   R         +          +   A++    
Sbjct: 289 AALAACRLEGVAFAELQRAVAGLKPPGRRFDFRGIWNGRLVVDDYAHHPSEVAATLGMAQ 348

Query: 356 -------------AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
                           +++   PH   R    L    E    + +  I          I 
Sbjct: 349 LMVGSGRSPLPQVPRRLVAVFQPHRYSRTAQFLPGFAEALRNAHTVLIAPLYAAGEAPID 408

Query: 403 HVWLSGFHVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                G    AL +A+     ++ V  + ++D L + +    V+GD+V+   
Sbjct: 409 -----GVSSQALAEAIRALDPTLPVMVASSLDELAVQVAGCSVEGDLVLAMG 455


>gi|188527819|ref|YP_001910506.1| hypothetical protein HPSH_05320 [Helicobacter pylori Shi470]
 gi|188144059|gb|ACD48476.1| hypothetical protein HPSH_05320 [Helicobacter pylori Shi470]
          Length = 335

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|187477730|ref|YP_785754.1| cyanophycin synthetase [Bordetella avium 197N]
 gi|115422316|emb|CAJ48840.1| cyanophycin synthetase [Bordetella avium 197N]
          Length = 857

 Score = 41.0 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 73/377 (19%), Positives = 125/377 (33%), Gaps = 46/377 (12%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV----------PLTLAR--M 156
            IIA+ G+ GKTTT  +    L+   K      S   +IG           P +  R  +
Sbjct: 471 PIIAVAGTNGKTTTVRLSAHILAVSGKRVGMTNSDGVYIGTRRIDTGDCSGPRSARRILL 530

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAEI 213
             DVD  +FE      G +R      R  +A++T I          I   EE+A+ K  I
Sbjct: 531 HPDVDAAVFETA--RGGILREGLAFDRCDVAIVTNIGMGDHLGLGYITTVEELAAVKRVI 588

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQLRKWKQ 265
            + +   G   LN  D+    + +                 I +                
Sbjct: 589 VQYVRNKGMAVLNAADTHVAAMASVCPGDVTFFAPDRNHPIIATHRAQGRRVVYREDDDI 648

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
            + +   EV++    + +   G      +N +  +G    L  D  T  +AL+ F     
Sbjct: 649 VAAEGGEEVRIPLAQIPLTRDGAITFQVENAMACIGAAWGLGIDWATIRQALASFVNDAQ 708

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
                    + G  TLI + Y  NP +++A ++ +  +        I+  GD  +  E  
Sbjct: 709 TAPGRFNVFDYGGATLIAD-YGHNPDAIEALVAAIEALPAKRRSVVISGAGDRRD--EDL 765

Query: 386 QSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG--- 432
           +     L +         V L           G  +  L+  L ++      E + G   
Sbjct: 766 RRQTEILGDY-----FDDVLLYEDQCQRGREDGEVIALLRQGLTQAKRASRIEEIRGEFI 820

Query: 433 LFLFIQSSLVDGDVVVV 449
                  SL  GD+ ++
Sbjct: 821 AIDRALESLSPGDLCLI 837


>gi|259047061|ref|ZP_05737462.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
 gi|259036111|gb|EEW37366.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella adiacens ATCC
           49175]
          Length = 443

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 58/372 (15%), Positives = 118/372 (31%), Gaps = 49/372 (13%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           + + + +     I V         L +L            +AITGS GKT+T  +L   L
Sbjct: 76  SHEELVAAREKGIEVIR---YHKFLGELLKNY------KSVAITGSHGKTSTTGLLAHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           S ++ T   IG                   +  + E        + +     RP  A++T
Sbjct: 127 SGMEPTSYLIGDGTGKG---------VESSEHFVLEACEYKRHFMAY-----RPDYAIMT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   ++ I+++ SA      G +    I    DD     L+A         +  +
Sbjct: 173 NIDFDHPDYYTDIDDVQSAFEAF--GKQVKKGIIACGDDERLRTLEAI------VPVTYY 224

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G  ++ D   +  ++    S+ +  + G+     +            + +     L    
Sbjct: 225 GVGEHNDVIAKNIRKEKAGSYFDAYIHGELYGHFYIPTYGDHNILNALAIIAFYYLNQLD 284

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
              +            G + R +        + + Y  +P+ ++A +    Q  P  E  
Sbjct: 285 PNELAQQFR----TFSGVKRRFSEKVINGVTVIDDYAHHPSEIRATLDAARQKYPDKE-- 338

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM 430
              V          + +   + A VLSL    HV+L      ++++            ++
Sbjct: 339 --VVAVFQPHTFTRTIALLEEFASVLSLA--DHVYLC-EIFASVREEAGDV-------SI 386

Query: 431 DGLFLFIQSSLV 442
           + L   ++    
Sbjct: 387 EDLAKLVKGGAK 398


>gi|240141485|ref|YP_002965965.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
 gi|240011462|gb|ACS42688.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens AM1]
          Length = 455

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 118/401 (29%), Gaps = 55/401 (13%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV G  D+     + A  A     A  +AITG+ GK+TT  +    L    +    
Sbjct: 91  QAGIPVIG--DIEIFCRERAALA---PNAPFVAITGTNGKSTTTALTAHLLRHAGRDVQM 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                 +IG  +     P      + EL    +     LT  ++P + ++  + P HL  
Sbjct: 146 G----GNIGTAILSLEPPAATCVHVVELSSFQID----LTPSLKPGVGILLNLTPDHLDR 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+ K  +  G +         DD +   +  +     I+           D+ 
Sbjct: 198 HGTMENYAAIKERLVAGADLAVIGV---DDPYCAAIAERRTGERIRLHVEGHGDAAGDYV 254

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                             G  +  V          N+      V+       T+ +  + 
Sbjct: 255 GANGTVRG--------PDGAVIAEVTGIQALLGDHNLQNAAAAVAAAIRLGLTSAEIAAG 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G   R       G    +++S   N  S + A+     I          V G   
Sbjct: 307 LKSFPGLAHRMEPLRRIGPTLFVNDSKATNADSTEKALLAFRDI-------HWIVGGKAK 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGLFLFIQ 438
           E G         LA +     ++H +L G    A    L   +      T+        +
Sbjct: 360 EGGI------EPLAPLFDR--VAHAYLIGASSEAFAATLEGRVAFTRCGTLEAATEAAAR 411

Query: 439 SSLVDGD---VVVV---KSS---------NSCGFYRLINLL 464
           ++   G    VV++    +S             F  L+  L
Sbjct: 412 AARASGTEAPVVLLSPACASYDQFPNFEVRGDRFRTLVAAL 452


>gi|15802862|ref|NP_288889.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 EDL933]
 gi|15832453|ref|NP_311226.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. Sakai]
 gi|168748169|ref|ZP_02773191.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755072|ref|ZP_02780079.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168761242|ref|ZP_02786249.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767946|ref|ZP_02792953.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168772954|ref|ZP_02797961.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780175|ref|ZP_02805182.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787227|ref|ZP_02812234.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC869]
 gi|168798490|ref|ZP_02823497.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC508]
 gi|195935694|ref|ZP_03081076.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC4024]
 gi|208806589|ref|ZP_03248926.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813635|ref|ZP_03254964.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208821737|ref|ZP_03262057.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209398810|ref|YP_002271724.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327399|ref|ZP_03443482.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254794208|ref|YP_003079045.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. TW14359]
 gi|261223230|ref|ZP_05937511.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259220|ref|ZP_05951753.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516674|gb|AAG57444.1|AE005463_7 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate
           synthetase [Escherichia coli O157:H7 str. EDL933]
 gi|13362669|dbj|BAB36622.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771040|gb|EDU34884.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017290|gb|EDU55412.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002048|gb|EDU71034.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357609|gb|EDU76028.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362861|gb|EDU81280.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368347|gb|EDU86763.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189372902|gb|EDU91318.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC869]
 gi|189378959|gb|EDU97375.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC508]
 gi|208726390|gb|EDZ75991.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734912|gb|EDZ83599.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208741860|gb|EDZ89542.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209160210|gb|ACI37643.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209764820|gb|ACI80722.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764822|gb|ACI80723.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|209764826|gb|ACI80725.1| dihydrofolate:folylpolyglutamate synthetase [Escherichia coli]
 gi|217319766|gb|EEC28191.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254593608|gb|ACT72969.1| bifunctional folylpolyglutamate synthase [Escherichia coli O157:H7
           str. TW14359]
 gi|320192061|gb|EFW66706.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC1212]
 gi|326339668|gb|EGD63479.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. 1125]
 gi|326344130|gb|EGD67891.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. 1044]
          Length = 422

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|284009294|emb|CBA76432.1| FolC bifunctional protein [includes [Arsenophonus nasoniae]
          Length = 455

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 23/285 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V  +IA IT+IA  H+                  G+ ++G   +  +  
Sbjct: 171 GLGGRLDATNIVDANIAAITSIALDHIDWLG---NDREQIGYQKAGIFRSGRYAVVGEPD 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +   + ALG K              +    +     W     +    ++    +  
Sbjct: 228 MPKSINEVAQALGAKLFR---------CGVDWQFEPQNDHWHWQSHEHDFKQLPLPNVPL 278

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   L  +  +      +  AI   ++           R  +      +I +  +   
Sbjct: 279 ANAATALAIIDCLIKEGDAISRAISLQAIQQGLIKAKLPGRFQIICQQPCVILDVAHNPH 338

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
           A+   A  +              V       G L+          L+   +   +L+   
Sbjct: 339 AAAYLADRLSCLPRQKNTKVYAVV-------GMLADKDIKSTLSYLAPQ-VDKWYLASLS 390

Query: 411 VLALKDALPRSIHV---HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            +   DA   + +V   +  +T+   +L   +   + D+VVV  S
Sbjct: 391 EIRGADAAQLAQYVDSPYQFDTVKDAWLQAMNEANEQDIVVVCGS 435


>gi|147677148|ref|YP_001211363.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
 gi|146273245|dbj|BAF58994.1| folylpolyglutamate synthase [Pelotomaculum thermopropionicum SI]
          Length = 430

 Score = 41.0 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 92/301 (30%), Gaps = 28/301 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD+ + E+    LG     T++VRP ++VIT ++  H              A    G+ 
Sbjct: 138 KVDYLVLEV---GLGGRCDATNVVRPLLSVITNVSVDHQEYLG---NSIREIAGEKAGII 191

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           K G   +         +   +       +   G+    D +        E     +    
Sbjct: 192 KRGVPTVTAAAGEALEVIEDTCRKRNSPLTVVGR----DVRWEHVSLSEEGQCFTICGLK 247

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +  E +   +     Q    T      +  D+   I A +V      R       + +  
Sbjct: 248 RKYEDIGISLLGRHQQVNAATAVAAVEVLMDLGVDISAGAVRAGLAARWPGRLEVMRRKP 307

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +ID ++N      + A S+   ++ H  GR + ++  M       +     +AE+   
Sbjct: 308 LVIIDGAHN-----YEGARSLRRALADHFPGREMVLVIGML----DDKERFKVVAELAPA 358

Query: 399 YNISHVWLSGFHVLALKD------ALPRSIHVHYSET-MDGLFLFIQSSLVDGDVVVVKS 451
                V ++               A  R +   Y E  ++       S     D+V    
Sbjct: 359 A--RAVVVTRPDSPRAAKWQQLAVAARRHVREVYLEELIEEAVEKALSLAGPEDLVCFTG 416

Query: 452 S 452
           S
Sbjct: 417 S 417


>gi|320174672|gb|EFW49805.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella dysenteriae CDC 74-1112]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|47847291|dbj|BAD21353.1| Nest forming protein 1 [Hydropsyche sp. T20]
          Length = 348

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 18/262 (6%), Positives = 48/262 (18%), Gaps = 7/262 (2%)

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLV 182
             +    L    K  A       +  V             G+      +        H  
Sbjct: 56  CGIFGNHLWDYVKYSASWSHSVENYDVGYHGFYWDDSWVHGVPHGNYYYPLWNYCCQHPR 115

Query: 183 RPHIAVITTIAPAHLS----NFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                +       ++       + +E      +      + +    + + + ++ L    
Sbjct: 116 CNRCGIFGHHLQDYVKYSASWSTSVENYGYDVSYPGFYWDNSWVHGVPHGNHYYPLWNYC 175

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
                      FG       +       S +++                 G     +   
Sbjct: 176 CQHPRCNRCGIFGHHLQDYIKYSASWSTSVENYGYDVGYPGFYWDDSWVHGVPHGNHYYP 235

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKR---YRCALNQGFFTLIDESYNANPASMKA 355
                          I    +    +                +    D+S+         
Sbjct: 236 LWNYCCHHPRCNRCGIFGHHLQDYVKYSASWSTSVEDYGGYDYDFYWDDSWVHGVPHGNC 295

Query: 356 AISVLSQISPHGEGRRIAVLGD 377
              + +    H    R  + G 
Sbjct: 296 YYPLWNYCCSHPRCNRCGIFGQ 317


>gi|110642519|ref|YP_670249.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 536]
 gi|191170204|ref|ZP_03031758.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           F11]
 gi|300986855|ref|ZP_07177837.1| protein FolC [Escherichia coli MS 200-1]
 gi|110344111|gb|ABG70348.1| FolC [Escherichia coli 536]
 gi|190909720|gb|EDV69305.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           F11]
 gi|300306344|gb|EFJ60864.1| protein FolC [Escherichia coli MS 200-1]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|74312832|ref|YP_311251.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella sonnei Ss046]
 gi|82544796|ref|YP_408743.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii Sb227]
 gi|170019376|ref|YP_001724330.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli ATCC 8739]
 gi|187730129|ref|YP_001881137.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii CDC 3083-94]
 gi|191169677|ref|ZP_03031370.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B7A]
 gi|209919815|ref|YP_002293899.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli SE11]
 gi|218554870|ref|YP_002387783.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli IAI1]
 gi|300903706|ref|ZP_07121621.1| protein FolC [Escherichia coli MS 84-1]
 gi|301303223|ref|ZP_07209348.1| protein FolC [Escherichia coli MS 124-1]
 gi|331669014|ref|ZP_08369862.1| bifunctional protein FolC [Escherichia coli TA271]
 gi|73856309|gb|AAZ89016.1| dihydrofolate:folylpolyglutamate synthetase [Shigella sonnei Ss046]
 gi|81246207|gb|ABB66915.1| dihydrofolate:folylpolyglutamate synthetase [Shigella boydii Sb227]
 gi|169754304|gb|ACA77003.1| FolC bifunctional protein [Escherichia coli ATCC 8739]
 gi|187427121|gb|ACD06395.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella boydii
           CDC 3083-94]
 gi|190900281|gb|EDV60137.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           B7A]
 gi|209913074|dbj|BAG78148.1| dihydrofolate:folylpolyglutamate synthase [Escherichia coli SE11]
 gi|218361638|emb|CAQ99234.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli IAI1]
 gi|300404288|gb|EFJ87826.1| protein FolC [Escherichia coli MS 84-1]
 gi|300841397|gb|EFK69157.1| protein FolC [Escherichia coli MS 124-1]
 gi|315255252|gb|EFU35220.1| protein FolC [Escherichia coli MS 85-1]
 gi|320183771|gb|EFW58605.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella flexneri CDC 796-83]
 gi|323168512|gb|EFZ54192.1| bifunctional protein folC [Shigella sonnei 53G]
 gi|323944828|gb|EGB40894.1| FolC protein [Escherichia coli H120]
 gi|324020837|gb|EGB90056.1| protein FolC [Escherichia coli MS 117-3]
 gi|324117807|gb|EGC11706.1| FolC protein [Escherichia coli E1167]
 gi|331064208|gb|EGI36119.1| bifunctional protein FolC [Escherichia coli TA271]
 gi|332093668|gb|EGI98726.1| bifunctional protein folC [Shigella boydii 3594-74]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|309784975|ref|ZP_07679608.1| bifunctional protein folC [Shigella dysenteriae 1617]
 gi|308927345|gb|EFP72819.1| bifunctional protein folC [Shigella dysenteriae 1617]
          Length = 403

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 317 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 376

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 377 DTVLVCGS 384


>gi|261346176|ref|ZP_05973820.1| FolC protein [Providencia rustigianii DSM 4541]
 gi|282565832|gb|EFB71367.1| FolC protein [Providencia rustigianii DSM 4541]
          Length = 429

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 80/284 (28%), Gaps = 21/284 (7%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H        E    +     G+ +     +  +  
Sbjct: 149 GLGGRLDATNVVDADIAAITSIALDHTDWLGSDREHIGYEKA---GIFRQDHYGVVGEPD 205

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   +  +G +           +             W     Q    ++    +  
Sbjct: 206 MPASIGEYADKIGTRLFRRGKDWNYQEH---------GNHWSWESEQRSWQDLPLPNVPL 256

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +  +  ++   I   +++H  +      R  +       I +  +   
Sbjct: 257 ANAATAMGVISCLMEIAPELTLKITDQAIYHGLQTAQLPGRFQVIGENPLKILDVAHNPH 316

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A+      +       G   R  V  LGD    G L           L+          G
Sbjct: 317 AAGYLVTKLAQLPIVDGRRIRAVVGMLGDKDIQGTLQCLSKQVTDWYLAPLKE----FRG 372

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V  L   L  +      ++++  +    +     DV+VV  S
Sbjct: 373 ADVAQLSQHLDDANE---FDSVEAAWQQACNDAQPQDVIVVCGS 413


>gi|172035156|ref|YP_001801657.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. ATCC 51142]
 gi|254766046|sp|B1X090|MURD_CYAA5 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|171696610|gb|ACB49591.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cyanothece sp. ATCC
           51142]
          Length = 456

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 120/390 (30%), Gaps = 47/390 (12%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK---KTYACIGSYNNHIGVPLT 152
            +L +A R    +  + ITG+ GKTTT  ++       K    +   IG     + +   
Sbjct: 94  GELELAWRYLQSSPWVGITGTNGKTTTTALVAAIFQGAKLNAPSCGNIGYAACELALSKL 153

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 + D+ I E+           +  + P I + TT    HLS    ++   + KA 
Sbjct: 154 KKDNTSNYDWIIAEISSYQ----CESSQELSPKIGLWTTFTADHLSRHKTLDNYYAIKAS 209

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +    E          +     L            ++  K K+            + +W+
Sbjct: 210 LLYRSEYQI------FNGDDPYLHQTGLHQWADAYWTTVKGKDNLLCDPSQGVYIQDNWV 263

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
               +      +    G+H  QN+LM +    +   +      A++ F     R +  R 
Sbjct: 264 VAFGELILPLNLFKMPGFHNQQNLLMAIAAARLAGIEKGAIASAIATFTGVPHRLEYIRT 323

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  + +  +  +           I + G   + G+  +     +
Sbjct: 324 VDGID---FINDSKATNYDAAEVGLLSVQ-------SPTILIAGGEEKEGDDKKW----I 369

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLF---IQSSLVDGDVV 447
           A++     +  V L G         L    +      ETMD        +   L    V+
Sbjct: 370 AQI--KSKVIKVLLIGEAAENFAKRLHDCDYHDYEIVETMDKAIERSLILGQELKAK-VI 426

Query: 448 VV---KSS---------NSCGFYRLINLLL 465
           ++    +S             F  L   L+
Sbjct: 427 LLSPACASFDQYQSFEHRGEHFRELCQKLI 456


>gi|170682976|ref|YP_001744515.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli SMS-3-5]
 gi|170520694|gb|ACB18872.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           SMS-3-5]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|34499800|ref|NP_904015.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Chromobacterium violaceum ATCC 12472]
 gi|62900566|sp|Q7NPZ7|MURD_CHRVO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|34105650|gb|AAQ62004.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chromobacterium
           violaceum ATCC 12472]
          Length = 453

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 62/398 (15%), Positives = 124/398 (31%), Gaps = 43/398 (10%)

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPV----FGVDDVLGALNKLAVAARLRSKATIIAI 113
             A   GA L+VV+  +  +  +++         V D+     ++   A     + +IAI
Sbjct: 61  DDATFAGAELLVVSPGVPLANPAIAAFRRAGGEVVGDI-----EILARAIQGDGSKVIAI 115

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
           TGS GK+T   ++             +        +   LAR        ++ L +S   
Sbjct: 116 TGSNGKSTVTSLVGHL-CEAAGLDTVVAGNIGLAVLEALLAREQSGKRPDVWVLELSSFQ 174

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
                +       A +  I+  HL  ++ + + A AK  +F G                +
Sbjct: 175 LESTFSLAAD--AATVLNISEDHLDRYADLLDYAHAKTRVFNG-------------KGVQ 219

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHHGIGYHM 292
           +L      +             +      +       +       K  +       G H 
Sbjct: 220 VLNKDDALVRAMVRPGHPVKWFSLNGAADYALARNGGYWLKVDGEKVFDCADMQLQGLHN 279

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
           A N L  LG+   +   ++  +  L  F     R               ID+S   N  +
Sbjct: 280 AANALAALGLCQGIGLPLEKLLDGLKTFRGLAHRV---ELVDEFDGIAFIDDSKGTNVGA 336

Query: 353 MKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL 412
            +AA++ ++        + + + G   +  + +        +         V L G    
Sbjct: 337 TEAALNGMT-------RQVVLIAGGDGKGQDFAP------LKPACQRIARAVLLIGRDAG 383

Query: 413 ALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ AL  S       +T++       +    GDVV++
Sbjct: 384 RIEAALEDSGLALERCDTLEEATRRAAALARPGDVVLL 421


>gi|218695914|ref|YP_002403581.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli 55989]
 gi|218352646|emb|CAU98427.1| bifunctional folylpolyglutamate synthase and dihydrofolate synthase
           [Escherichia coli 55989]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|213965210|ref|ZP_03393407.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
 gi|213952062|gb|EEB63447.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Corynebacterium
           amycolatum SK46]
          Length = 492

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 51/405 (12%), Positives = 108/405 (26%), Gaps = 50/405 (12%)

Query: 66  GLVVVN------TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
             +V +      + +  +     +PVFG D  L      A     +    ++  T     
Sbjct: 85  VAIVTSPGWRPTSPLFGAAAEAGVPVFG-DVALAFAGDCAQLWGPKRTWLVVTGTNGKTT 143

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TT+     +           +  Y+     P          +    EL    L       
Sbjct: 144 TTSMLAAMLGEQGAAVGNIGVALYDALTAEPRI--------EVLAAELSSFQLHWA---- 191

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
             +RP   V+  +A  H+      E     K     G                E ++   
Sbjct: 192 PNIRPDAGVLLNLAEDHIDWHGSYENYGMDKTRALRGAVAIYGADDADVVEHVEKMRKND 251

Query: 240 HALGIKTIYSFGKSKNADFQLRK----WKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
                   ++ G  +     +R      +            +   +     GI       
Sbjct: 252 ELGNSVVGFTDGPPEAHQVGVRDGMIVDRAFGGGDAAADDSEPGIVIASIAGISPPGRAG 311

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
           +L  +   ++  +   +  +  +     E R  R +          ID+S   NP +   
Sbjct: 312 VLDAVAATAMARSIGTSPEQIAAALEIFEVRAHRGQIVHKANDVVWIDDSKATNPHAAD- 370

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN--ISHVWLSGFHVLA 413
                        G    V     ++         +++ +++ +   +    + G     
Sbjct: 371 ---------AALSGHERVVWIVGGQLKG------AEISPLVAKHAHRLQAAVVLGVDRQL 415

Query: 414 LKDALPR---SIHVHYSETMDGLFLFIQ------SSLVDGDVVVV 449
           + DAL R   ++ V   +  D +    +           GDVV++
Sbjct: 416 VSDALSRIAPAVPVVVIDDTDKVDAMAKVCMAASEYANPGDVVLL 460


>gi|146009|gb|AAA23802.1| folylpolyglutamate-dihydrofolate synthetase [Escherichia coli]
 gi|146020|gb|AAA23808.1| folypolyglutamate synthetase-dihydrofolate synthetase [Escherichia
           coli]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|206890404|ref|YP_002247944.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742342|gb|ACI21399.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 342

 Score = 40.6 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 27/131 (20%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SIAPQEA-FFAIKGPHYDGHDFILHA 60
               ++        I    +  ++GI    +        +  + A          +   A
Sbjct: 1   MKLSEIAHFFNAK-IEGDSEIEISGI----KGFEDAQEGDITYIA-------SSKYAELA 48

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-------TIIAI 113
               A   +V       I +L+ P    ++      KL     ++ +        +I+A 
Sbjct: 49  KNSKASAFIV----KEKIPNLNKPQLITENPQFVFAKLLEMFYVKPQPCKGISEKSIVAS 104

Query: 114 TGSVGKTTTKE 124
           T  +GK  T  
Sbjct: 105 TAQIGKNVTVY 115


>gi|170697951|ref|ZP_02889034.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
 gi|170137117|gb|EDT05362.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           IOP40-10]
          Length = 220

 Score = 40.6 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E           L EVL    +  V      +      +
Sbjct: 90  ALDLLPMEPIADVHFIQGDFRE-----DDVLRQLEEVLEGRAVDLVI---SDMAPNLSGV 141

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 142 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|317180164|dbj|BAJ57950.1| hypothetical protein HPF32_0368 [Helicobacter pylori F32]
          Length = 339

 Score = 40.6 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|326803163|ref|YP_004320981.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650206|gb|AEA00389.1| UDP-N-acetylmuramate--L-alanine ligase [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 452

 Score = 40.6 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 104/298 (34%), Gaps = 36/298 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   V     L + V         L +L          T +AITGS GKT+T  +++  L
Sbjct: 76  DHPEVVRAKELGLTVIR---YHYFLGELIKKY------TSVAITGSHGKTSTTGLMSHVL 126

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
            S+K T   IG                 D ++ + E        + +      P  A+ T
Sbjct: 127 GSLKTTSYLIGDGTGKG---------VEDGEYFVLEADEYREHFLAY-----EPDYAIFT 172

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   +  IEE+ +A  +     +    +    DD + + LK +     +   Y  
Sbjct: 173 NIDFDHPDFYHNIEEVFAANRKFAH--QVKNKVIAYGDDPYLQKLKDE-----VDVWYYG 225

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQ-GKSMEVVHHGIGYHMAQNMLMTLGIVSILTAD 309
             + + D   +   + ++ S  +V +Q         H  G H   N L  +G   +   D
Sbjct: 226 IDNDDFDIVAKDIVRNTKGSHFDVWVQGKHYGNFSIHTFGQHSILNSLAVIGFCYLEGFD 285

Query: 310 VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
            +   +AL+ F   +      R         +I + Y  +P+ +KA I    Q  P  
Sbjct: 286 PEDVQEALTSFKGVKR-----RFNERFVEDMVIVDDYAHHPSEIKATIDAARQQYPDK 338


>gi|324015396|gb|EGB84615.1| protein FolC [Escherichia coli MS 60-1]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|157155272|ref|YP_001463659.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli E24377A]
 gi|157077302|gb|ABV17010.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E24377A]
          Length = 422

 Score = 40.6 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|260814894|ref|XP_002602148.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
 gi|229287455|gb|EEN58160.1| hypothetical protein BRAFLDRAFT_234265 [Branchiostoma floridae]
          Length = 215

 Score = 40.6 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 5/166 (3%), Positives = 19/166 (11%)

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS 267
                 +          +     ++  +    H                      W   +
Sbjct: 4   CIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFT 63

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
              W                  +              I T           +        
Sbjct: 64  CIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFT 123

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             +                     ++     + + +          
Sbjct: 124 CIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCI 169



 Score = 39.8 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 8/193 (4%), Positives = 28/193 (14%), Gaps = 4/193 (2%)

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
               ++   +     + T I       +     +                    +     
Sbjct: 26  HWWWWIFTCLHWCWGIFTCIHW----WWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 81

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM 292
                    +     + +G      +    +        +   +                
Sbjct: 82  FTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCSRG 141

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPAS 352
             +ML+ +     +   V       +  H                               
Sbjct: 142 DLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHWCWGIFTCVHWCWGIFTCIHW 201

Query: 353 MKAAISVLSQISP 365
                + L     
Sbjct: 202 WWWIFTCLHWCWG 214



 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/169 (4%), Positives = 23/169 (13%)

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
                          T    +   F  L         I   +      +  + +      
Sbjct: 8   WWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHW 67

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
               +  +         +H         +    +         + T +            
Sbjct: 68  WWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHW 127

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
                  L+      +    N                          + 
Sbjct: 128 WWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIF 176



 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 9/208 (4%), Positives = 24/208 (11%)

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
              +     I    H        I                        +          +
Sbjct: 2   FTCIYWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 61

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
                ++  +    H                      W   +   W              
Sbjct: 62  FTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGIFTCIHWWWWIFTCLHWCWGI 121

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
               +                   +        +F         + C     +       
Sbjct: 122 FTCIHWWWWIFTCLHWCSRGDLHMLLNIYWCWGIFTCVHWCWGIFTCIHWWWWIFTCLHW 181

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIA 373
                  +     + + I          
Sbjct: 182 CWGIFTCVHWCWGIFTCIHWWWWIFTCL 209


>gi|315924805|ref|ZP_07921022.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621704|gb|EFV01668.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 101/323 (31%), Gaps = 36/323 (11%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
             R     D  + EL    L  I        P  A I  +AP HL+    +E   +AKA 
Sbjct: 155 HVRTSTAADLFVSELSSFQLETIDTFA----PKAAAILNLAPDHLNRHGTLENYYAAKAR 210

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           IFE       + +N DD+       K  A   K  +S          L+       +   
Sbjct: 211 IFENQSAEDILVVNADDADVVRCVRK--APSRKIWFSLKGRPEKGIYLKGQTLMIAEGTD 268

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
             Q      E      G H   N +  +G+   +   +    K L  F   E R +    
Sbjct: 269 ADQDTAVITEEALGIKGPHNVMNAMAAIGLAYFMGVPLVIIQKTLRAFKGVEHRQEFVAT 328

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    I++S   N  +   A++ +++ +    G            G   Q  +  +
Sbjct: 329 IGGVD---YINDSKGTNTDAAITALNAMTKPTILIAG------------GYDKQEDYTRM 373

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFLFIQSSLVDGDVVVV- 449
            +++    +  + L G    A+ +A   +    Y             +++   GD V++ 
Sbjct: 374 MQLV-TVKVKKLLLIGDTAKAMAEAAEAAGFKDYSLVADYPEAVAKAKAAAAPGDAVLLS 432

Query: 450 --KSS---------NSCGFYRLI 461
              +S             F +L+
Sbjct: 433 PACASWDMFANYEDRGNLFKQLV 455


>gi|215411869|ref|ZP_03420653.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           94_M4241A]
 gi|298525647|ref|ZP_07013056.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
 gi|298495441|gb|EFI30735.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 94_M4241A]
          Length = 494

 Score = 40.6 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 69/409 (16%), Positives = 122/409 (29%), Gaps = 47/409 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGA-LNKLAVAARLRSKATIIAITG 115
           GA  VV     +              IPV        A L KL        + T++    
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVL----RSAVLAKLMAG-----RTTLMVTGT 123

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
               TTT  ++             +G      G            D  + E   S    +
Sbjct: 124 HGKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLL 179

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
           ++      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L
Sbjct: 180 QYT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAAL 234

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHG 287
             ++  LGI  +  +G                +       ++             +    
Sbjct: 235 AQRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSV 293

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            G HMA N L  L     + A  D  +  L+ F     R +             + + Y 
Sbjct: 294 PGRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYA 353

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL- 406
            +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++ 
Sbjct: 354 HHPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVL 410

Query: 407 --SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
              G     L        + HV     Y      +   + ++   GDV+
Sbjct: 411 DVYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 459


>gi|207092049|ref|ZP_03239836.1| hypothetical protein HpylHP_03228 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 327

 Score = 40.6 bits (93), Expect = 0.52,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPVSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|317182289|dbj|BAJ60073.1| hypothetical protein HPF57_0999 [Helicobacter pylori F57]
          Length = 335

 Score = 40.6 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIRLKDIEHSLNHLFKF 91


>gi|254497330|ref|ZP_05110135.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Legionella drancourtii LLAP12]
 gi|254353442|gb|EET12172.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Legionella drancourtii LLAP12]
          Length = 349

 Score = 40.6 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILH 59
           M+   +  D+   + G  IG      ++ +S ID  +I P    FA      D  + +  
Sbjct: 1   MSA--SLCDIANLVDGVVIGDD-STKISALSPID--NIVPGTLVFA------DSKENLKL 49

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           A    A  ++V      S      P+  V   L A   L        + T
Sbjct: 50  AEASPAAAILVTPKTTLSEK----PLIQVPHPLKAFITLLHYFHPSPQIT 95


>gi|154245789|ref|YP_001416747.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Xanthobacter
           autotrophicus Py2]
 gi|154159874|gb|ABS67090.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Xanthobacter
           autotrophicus Py2]
          Length = 537

 Score = 40.6 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 111/378 (29%), Gaps = 43/378 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLRSKA----TIIAITGSV 117
              +V +  V        P + V     A    +  + +  R R         IAITG+ 
Sbjct: 79  VAALVLSPGVPLTHPE--PHWSVKLARDAGAEVIGDIELFCRERHAIARRSPFIAITGTN 136

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRF 177
           GK+TT  ++T  L    +          +IG  +     P      + E     +     
Sbjct: 137 GKSTTTALITHILRVAGRDVQMG----GNIGTAILSLAPPKPGRVHVVECSSYQVD---- 188

Query: 178 LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKA 237
           L   + P + V+  I P HL     IE  A+ K  +  G+E  GT  +  DD F   +  
Sbjct: 189 LAPSLDPSVGVMLNITPDHLDRHGTIEHYAAVKERLVAGVEGGGTAVVGVDDDFSAAMAD 248

Query: 238 KSHALGIKTIYSFGKSKNADFQLRKWK---QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           ++   G   +    K    D      +        +            +       + A 
Sbjct: 249 RAVEAGKHVVRISVKRALPDGIWLDGETLVVSEGGAERFRLPLAGIGSLRGTHNAQNAAA 308

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                 G+            +         G   R     N+G    +++S   N  + +
Sbjct: 309 AFAACRGVGVAPEIITIAMKRF-------PGLAHRMEEVGNKGAVLFVNDSKATNADAAE 361

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLAL 414
            A++  + I     G+     G +  +                   ++  +L G      
Sbjct: 362 RALASFTSIFWIAGGKPKT--GGIAPLAPFFDR-------------VAKAYLIGEAAEEF 406

Query: 415 KDALPRSIHVHYSETMDG 432
              L  ++    + T+D 
Sbjct: 407 ATTLGSTVAHEIAGTLDK 424


>gi|163783992|ref|ZP_02178956.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880739|gb|EDP74279.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 328

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 19/109 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGIS--IDSRSIAPQEA-FFAIKGPHYDGHDFILHAV 61
                + +   G          + G+S   +       +  F  +          +   +
Sbjct: 1   MKLSKIAEIFNGQLYNFKEDKEITGVSSLFN---ATENDISF--LSDKK------LSDLL 49

Query: 62  QK-GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           +K  A  V V          + +    V++   A  KL        K  
Sbjct: 50  KKTKAAAVFV----KEPFEDVDVVQIVVNNPQVAFYKLIDILYPDEKFK 94


>gi|85374297|ref|YP_458359.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
 gi|84787380|gb|ABC63562.1| hypothetical protein ELI_07350 [Erythrobacter litoralis HTCC2594]
          Length = 476

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 69/412 (16%), Positives = 131/412 (31%), Gaps = 29/412 (7%)

Query: 65  AGLVVVNT-DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTK 123
           A   V ++   V     L +P     D+  AL   A           +AI G+ GK+T  
Sbjct: 83  ASAAVEDSVPEVVRAKELGLPRLTRADLNAALFNSAETG--------VAIAGTSGKSTVT 134

Query: 124 EMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVR 183
            ML   L    +    +          ++  R       G  +L +S + E      L +
Sbjct: 135 GMLGWILHHAGREPTIMNGAVMKN--FVSEGRPFASAVIGGVDLYVSEVDESDGSIALYQ 192

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P + ++  ++         +EE+ +   +     E +    +N DD     L+ ++    
Sbjct: 193 PKVGLLLNVSLD----HKSMEELRTLFGDYV---EASDIAVINADDDEAIQLEGRADDAI 245

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
              IY  G S       R      + + +  +       +V H  G H   N L  +   
Sbjct: 246 TFAIYDKGASIGVVDGSRADGPVRQAATVIDRRDDSEHALVLHMPGRHNLSNALAAIAGA 305

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
           S     V  A+ AL+ F     R               + + +  NP   +A +  L   
Sbjct: 306 SAAGVQVADAVAALAEFKGLARRFDI---IGTSASGITVIDDFGHNPEKCRATLRTLKAH 362

Query: 364 SPHGEGRRI-AVLGDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKD 416
                        G + +MG   +++F  +L           V+  G          + D
Sbjct: 363 PGRVLAFFQPHGYGPLRQMGAELAETFAYELDADDITLLCDPVYFGGTVDRSQGSERIVD 422

Query: 417 ALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            + +      +  T +G   ++ ++   GD +VV  +         + +L  
Sbjct: 423 LIAQAGGQAIHINTREGCGDWLVANAQPGDRIVVMGARDDTLTEFASSILAR 474


>gi|315623028|gb|ADU53143.1| P1B-ATPase heavy-metal transporter [Oryza sativa Japonica Group]
          Length = 1067

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 59/290 (20%), Gaps = 17/290 (5%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V+ +   + KLA+     +   +I  A+   VG      M ++ L   K +       
Sbjct: 649 IIVNIIFSVITKLAIVGLAFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKKCA 708

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +H G P                 G+SH         +V    + +   A     +    
Sbjct: 709 ASHHGSPKKCCSSSHHGSHAKKNHGVSHHCSDGPCKSMVSCKESSVAKNACHDHHHEHNH 768

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E  + K    +      +   +        L    HA      +    S   D +    
Sbjct: 769 HEEPAHKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHDTKKHDC 828

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---------------IVSILTA 308
                 +  E                 H      + L                       
Sbjct: 829 HGHEHSTCKEELNALPPTNDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIG 888

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  A                             ++ +   ++    
Sbjct: 889 SHCADKHACHDHEQVHEHHCCDEQQTPHTADLHPCHDHDHDNLEVEEVKD 938


>gi|319791816|ref|YP_004153456.1| cyanophycin synthetase [Variovorax paradoxus EPS]
 gi|315594279|gb|ADU35345.1| cyanophycin synthetase [Variovorax paradoxus EPS]
          Length = 855

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 122/380 (32%), Gaps = 48/380 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTI----------ALSSIKKTYACIGSYNNHIGVPLTLAR-- 155
             ++A+TG+ GKTTT  ++              ++         + +     P +     
Sbjct: 469 IPVVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQTDSGDCSGPKSARNVL 528

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           M  DVD  +FE+     G +R      R  +AV+T I        + I   E++A  K  
Sbjct: 529 MHPDVDAAVFEVA--RGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVEDLAVLKRV 586

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQLRKWK 264
           I   +   G   LN  D     + A                 + +          + +  
Sbjct: 587 IVRNVAADGYAVLNAADVNVAAMAAGCPGHVIFFTADRMHPVMATHRAQGKRTVYVDQDT 646

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + +     ++  + + +  +G       N++ ++     +  D DT    L+ F    
Sbjct: 647 LVAAEGSWRERIPLRDVPITRNGTIGFQVDNVMASVAAAWAVGLDWDTIRSGLASFMNDA 706

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    ++    T+I + Y  N  +M+A +S +  +  +     I+  GD  +    
Sbjct: 707 AGVPGRFNVMDYRGATVIAD-YGHNTDAMRALVSAVDTMPANKRSVVISGAGDRRDSDIR 765

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            Q+        +       V L           G  +  L+  L  +      + + G  
Sbjct: 766 DQT-------AILGEAFDDVILYQDAAQRGRADGEVMALLRQGLQGAGRTRQIDEIRGEF 818

Query: 433 -LFLFIQSSLVDGD--VVVV 449
                  + L  GD  +++V
Sbjct: 819 VAIDTALARLQPGDLSLILV 838


>gi|301155957|emb|CBW15427.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus parainfluenzae T3T1]
          Length = 451

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 99/317 (31%), Gaps = 23/317 (7%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + +F + E                   P   +I  I+  H   F  +  I      +   
Sbjct: 152 ESEFFVIEADEYDTAFFDKRSKFVHYNPKTLIINNISFDHADIFDDLHAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM-EVQ 275
           +  TG +    D+   +              +S  +    D +    +  ++ S      
Sbjct: 212 IPSTGRVLSFADEQSVKETLN-------MGCWSEQQFIGKDKEWFAERITNDCSEFAVFH 264

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
              K  EV  + +G H   N LM +         ++ A +A           KR      
Sbjct: 265 HGKKVAEVKWNIVGQHNMHNALMAIVAAYHAGIKIEDACQA----LGSFINAKRRLEVKG 320

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +     + + +  +P ++ A ++ L      G G RI  + +             ++A  
Sbjct: 321 EVNGITVYDDFAHHPEAILATLTALRD--KVGGGVRILAVLEPRSNTMKMGVHKDEIAPA 378

Query: 396 LSLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L       V++     +   + +   + +   HY+ ++D L   I +     D ++V  S
Sbjct: 379 LGRA--DAVFMLQPDNIPWDVAEIAGQCVQPAHYTGSVDKLVDMIVAEAKPRDQILV-MS 435

Query: 453 NSCGFYRLINLLLEEFP 469
           N   F  +   +L+   
Sbjct: 436 NGS-FGGIHQKILDRLK 451


>gi|241205556|ref|YP_002976652.1| UDP-N-acetylmuramate--L-alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859446|gb|ACS57113.1| UDP-N-acetylmuramate/alanine ligase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 471

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 135/407 (33%), Gaps = 48/407 (11%)

Query: 65  AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A +VVV+T +  S   L      +  V  V  A   LA   R R     IAI G+ GKTT
Sbjct: 67  AEVVVVSTAIKKSNPELIAAREKLLPV--VRRA-EMLAELMRFR---NAIAIGGTHGKTT 120

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L +       I     +            + ++ + E   S           
Sbjct: 121 TTSLVATLLEAGGLDPTVINGGIIN---AYGTNARMGEGEWMVVEADES-----DGTFLK 172

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   +AVIT I P HL ++   + + +A  +  E +   G   +  D    + L  +   
Sbjct: 173 LPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIED 232

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV-------HHGIGYHMAQ 294
             I    ++G++  AD + +  +    +S  +V+++ +    V           G H   
Sbjct: 233 RKII---TYGENPQADVRFKNVRIDGTRSIFDVEIRRRRTGQVIELKGLVMPMPGRHNIS 289

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N    + + + L        K L+ F   + R               I + Y  +P  +K
Sbjct: 290 NATAAIAVANRLGISSADIAKGLASFGGVKRRFTLTGEWNG----VQIFDDYGHHPVEIK 345

Query: 355 ---------AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
                        V++   PH   R  ++  +       + S  +          I    
Sbjct: 346 AVLRAARESCKGRVIAVHQPHRFSRLASLFEEFAACFNDADSIFLAPVYAAGEDPIE--- 402

Query: 406 LSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGD-VVVV 449
             G   ++L   +    H    +  + + L   +      GD VV++
Sbjct: 403 --GIDSVSLVSRIKSGGHRDARFINSAELLPQMVAEVAKPGDFVVLL 447


>gi|154252864|ref|YP_001413688.1| UDP-N-acetylmuramate--L-alanine ligase [Parvibaculum
           lavamentivorans DS-1]
 gi|171769613|sp|A7HVU8|MURC_PARL1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|154156814|gb|ABS64031.1| UDP-N-acetylmuramate--alanine ligase [Parvibaculum lavamentivorans
           DS-1]
          Length = 491

 Score = 40.6 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 69/400 (17%), Positives = 124/400 (31%), Gaps = 39/400 (9%)

Query: 65  AGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTT 121
           A ++VV++ + A    L         V  V  A   LA   RL+S    +AI G+ GKTT
Sbjct: 68  AQVIVVSSAIRADNPELMEARARFLPV--VRRA-EMLAELMRLKS---CVAIGGTHGKTT 121

Query: 122 TKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHL 181
           T  ++   L         I     +              ++ + E   S           
Sbjct: 122 TTSLVAAILDKAGLDPTVINGGIIN---AYGTNARLGGGEWMVVEADES-----DGTFVK 173

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
           +   IA++T I P HL  +   +    A     E +   G   +  D    + L  +   
Sbjct: 174 LPATIAIVTNIDPEHLDYYGSFDAAKDAFLAFVENVPFYGAAVMCIDHPEVQALIGR--- 230

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  + I ++G +  AD +    +            +  +     +   V     G H   
Sbjct: 231 VRDRRIVTYGTNPQADIRATNARVEDGFNVFDVAITDRKTGTAREMTGVRLAMHGTHNML 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRG-----KRYRCALNQGFFTLIDESYNAN 349
           N L  +G+ + +    D    AL  F   + R             +      ++ +    
Sbjct: 291 NSLAAIGVATQMGIADDKIRAALEGFGGVKRRFTFVGSWNDVNIYDDYGHHPVEIAAVLQ 350

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
            A        ++ + PH   R   +  + C     + +  +          I      G 
Sbjct: 351 AARSATKGRTIAVVQPHRYTRLHNLFDEFCACFNDADAVIVADVYEAGEKPIE-----GA 405

Query: 410 HVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
              AL + L    H  V   +  + L   I  +   GD+V
Sbjct: 406 SRDALVEGLRDRGHRNVMALDGPEALPRLIAETARPGDLV 445


>gi|294792175|ref|ZP_06757323.1| tetrahydrofolate synthase [Veillonella sp. 6_1_27]
 gi|294457405|gb|EFG25767.1| tetrahydrofolate synthase [Veillonella sp. 6_1_27]
          Length = 435

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 90/305 (29%), Gaps = 30/305 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
             VD+ + E+    LG +   T++V P ++VIT +   H +     +EEIA  KA I + 
Sbjct: 134 QGVDYAVVEV---GLGGLLDSTNIVTPKVSVITNVTIDHQAYCGDTVEEIARHKAGIIKS 190

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T   +   +  E +  K HA        FG    +            Q       
Sbjct: 191 KVPVVTAAQDTPLNVIEDVAKKQHAKLYVFNKDFGIDSRS-------AVTGGQMITISSN 243

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G H + N+   L  V +L  +     +                     
Sbjct: 244 DAAPAMLFTTMAGIHQSVNLACALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRG 303

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I +  +    +   A++         +   +A+L D              +   +
Sbjct: 304 LDRTFIFDGAHNAAGAESFAMTYNELFKDTPKTVVMAILKD---------KDQEAIIREV 354

Query: 397 SLYNISHVWLSG------FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
                  V +             L + + R++       +E+++            GD++
Sbjct: 355 VKSG-DTVLVVPAPTDRTEVPENLVEVIRRTVPKVTAQTAESVEAALALAYKHTKTGDII 413

Query: 448 VVKSS 452
            V  S
Sbjct: 414 AVCGS 418


>gi|134096475|ref|YP_001101550.1| cyanophycin synthetase [Herminiimonas arsenicoxydans]
 gi|133740378|emb|CAL63429.1| putative Cyanophycin synthetase [Herminiimonas arsenicoxydans]
          Length = 856

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLAR-- 155
             ++A+ G+ GKTTT  ++   L + K                         P +     
Sbjct: 472 IPVVAVAGTNGKTTTVRLIAHILQANKHRVGMTTTDGVYIENQRIDTGDCSGPRSARNVL 531

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIASAKAE 212
           M  DVD  +FE      G +R      R ++AV+T I        +  S +E++A  K  
Sbjct: 532 MHPDVDAAVFETA--RGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRV 589

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   GT  LN  D     + A               +  A  + +  +        
Sbjct: 590 IVQNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGTS 649

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   E ++    + + H+G+     +N +  +G    L    D  +  L  F    
Sbjct: 650 IVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFENSA 709

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                          T+I + Y  NP +++A    +  +       R+ V+    +  + 
Sbjct: 710 ATTPGRFNLFTHHGATVIAD-YGHNPDAIEALTHAVEAMPAKR---RMVVISGAGDRRDD 765

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                 ++           V L           G  +  L+  L ++      + + G  
Sbjct: 766 DLRRQTEILGDA----FDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSIKEIHGEF 821

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  +SL  GD+ ++
Sbjct: 822 LAIDTALASLQAGDLCLI 839


>gi|125598398|gb|EAZ38178.1| hypothetical protein OsJ_22530 [Oryza sativa Japonica Group]
          Length = 1067

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 59/290 (20%), Gaps = 17/290 (5%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V+ +   + KLA+     +   +I  A+   VG      M ++ L   K +       
Sbjct: 649 IIVNIIFSVITKLAIVGLAFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKKCA 708

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +H G P                 G+SH         +V    + +   A     +    
Sbjct: 709 ASHHGSPKKCCSSSHHGSHAKKNHGVSHHCSDGPCKSMVSCKESSVAKNACHDHHHEHNH 768

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E  + K    +      +   +        L    HA      +    S   D +    
Sbjct: 769 HEEPAHKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHDTKKHDC 828

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---------------IVSILTA 308
                 +  E                 H      + L                       
Sbjct: 829 HGHEHSTCKEELNALPPTNDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIG 888

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  A                             ++ +   ++    
Sbjct: 889 SHCADKHACHDHEQVHEHHCCDEQQTPHTADLHPCHDHDHDNLEVEEVKD 938


>gi|294794040|ref|ZP_06759177.1| tetrahydrofolate synthase [Veillonella sp. 3_1_44]
 gi|294455610|gb|EFG23982.1| tetrahydrofolate synthase [Veillonella sp. 3_1_44]
          Length = 435

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 22/301 (7%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
             VD+ + E+    LG +   T++V P ++VIT +   H +     +EEIA  KA I + 
Sbjct: 134 QGVDYAVVEV---GLGGLLDSTNIVTPKVSVITNVTIDHQAYCGDTVEEIARHKAGIIKP 190

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T   +   +  E +  K HA        FG    +            Q       
Sbjct: 191 KVPVVTAAQDTPLNIIEDVAKKRHAKLYVFNKDFGIDSRS-------AVTGGQMITISSN 243

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G H + N+   L  V +L  +     +                     
Sbjct: 244 DAAPAMLFTTMAGIHQSVNLACALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRG 303

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
              T I +  +    +   A++         +   +A+L D     +  ++   ++ +  
Sbjct: 304 LDRTFIFDGAHNAAGAESFAMTYNELFKDTPKTVVMAILKD-----KDQEAIIREVIKSG 358

Query: 395 ---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              +          +    V  ++  +P+ +    +E+++            GD++ V  
Sbjct: 359 DTVLAVPAPTDRTEVPENLVEVIRRTVPK-VTAQTAESVEAALALAYKHTKTGDIIAVCG 417

Query: 452 S 452
           S
Sbjct: 418 S 418


>gi|90580226|ref|ZP_01236033.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
 gi|90438528|gb|EAS63712.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Vibrio
           angustum S14]
          Length = 446

 Score = 40.6 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 38/348 (10%)

Query: 102 ARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVD 161
                   ++AITGS GK+T   ++              G+          L  +     
Sbjct: 102 FAREVDKPVVAITGSNGKSTVTSLVGEMAKEAGINVGVGGNIGF-----AALDMLAQQHS 156

Query: 162 FGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTG 221
             + EL    L      T  +    AV   ++  H+  +                 + + 
Sbjct: 157 LYVLELSSFQL----ETTTSLELTAAVYLNLSEDHMDRY------------PGGLAQYSQ 200

Query: 222 TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM 281
                +D +   +      A           S   D Q       + + W+ V  +    
Sbjct: 201 AKMRIFDHAKLAVFNRDDLATKPTQFSGAMTSFGFDDQDYGIVLVNGKEWLAVNGEAVMA 260

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G H   N L  L +        D A +A+  +     R    + A+N+     
Sbjct: 261 VADIALVGRHNVANCLAALALADAAGIPRDAACRAMQRYTGLAHRC---QLAVNRHGVRW 317

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           +++S   N AS  AA++ L       EG+   ++G     G+   +   +L  VL+  N+
Sbjct: 318 VNDSKATNLASTLAALNGLQL-----EGKLHLLMG-----GDSKGAEFSELKPVLADLNV 367

Query: 402 SHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             ++  G       D +  +I V   ETM    + I  ++  GD+V++
Sbjct: 368 -QLYSFGRDRHLFNDVVDNAISV---ETMSDAMVCISRTVQSGDMVLL 411


>gi|24374589|ref|NP_718632.1| FolC bifunctional protein [Shewanella oneidensis MR-1]
 gi|24349199|gb|AAN56076.1|AE015743_4 FolC bifunctional protein [Shewanella oneidensis MR-1]
          Length = 431

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 401 ISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           I   +L       G H   L+  L +       E +   +  +++ +   DVV+V  S
Sbjct: 356 IDTWYLVSLQGERGAHASLLRQTLTQETKACEFEDIATAWTALKAQIQPDDVVIVFGS 413


>gi|332885570|gb|EGK05816.1| hypothetical protein HMPREF9456_02080 [Dysgonomonas mossii DSM
           22836]
          Length = 430

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           A+ + +  +   T+       +      D + +  SN      + + L+E
Sbjct: 381 AVKKGLTGYSYPTVKEAIRAAKDWATPSDFIFIGGSNFV----VADALIE 426


>gi|116072545|ref|ZP_01469812.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase
          [Synechococcus sp. BL107]
 gi|116065067|gb|EAU70826.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase
          [Synechococcus sp. BL107]
          Length = 46

 Score = 40.6 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 6  TFHDLLQAIQGHSIGI--VPQGFVNGISIDSRSIAPQEAFFAI 46
          T   L+ A  G  +G    P   +  I  DSRS+ P + F  +
Sbjct: 4  TVRQLI-ACWGAPLGPIPDPDMALGRICTDSRSLQPGDFFVPL 45


>gi|308183142|ref|YP_003927269.1| hypothetical protein HPPC_05030 [Helicobacter pylori PeCan4]
 gi|308065327|gb|ADO07219.1| hypothetical protein HPPC_05030 [Helicobacter pylori PeCan4]
          Length = 335

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++        +    +    + D+  +LN L   
Sbjct: 59  GILY--AGEYPLSDRDVAWIRLKDIEHSLNHLFKF 91


>gi|227833493|ref|YP_002835200.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184481|ref|ZP_06043902.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227454509|gb|ACP33262.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 463

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 105/351 (29%), Gaps = 39/351 (11%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV-PLTLARMPVDVDFGIFEL 167
             +AITG+ GKTTT  ML   +++ ++          +IGV           VD  + EL
Sbjct: 113 RWLAITGTNGKTTTTGMLAAIMAADEQRSGQRAQAVGNIGVSSFDALAAEPRVDILVAEL 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
               L         +RP +  +  +A  HL      E  A+ KA+I  G           
Sbjct: 173 SSFQLHWSSH----LRPEVGALLNLADDHLDWHGSFEAYAADKAKILRG----QHAVYGK 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
           +D    +L A             G +  +  +    +       + V         V   
Sbjct: 225 EDEHVRVLAASLP----------GATAFSHAEPAAGEVGVSTGSLLVNEVAGMKSAVVDD 274

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK---EGRGKRYRCALNQGFFTLIDE 344
           +       +   L   +          +  S+          G R          T ID 
Sbjct: 275 VTTIQPAGLAGVLDAAAASAVAALAGAQPESIAEGLSAYVVAGHRGEIVHRHAGVTYIDN 334

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
           S   NP + + A+  L  +     G+      D+ E+       H    +   L  +   
Sbjct: 335 SKATNPHAAEVAMRGLDSVVWVAGGQLKG--ADVSEL----LRTHAARLKTAVLVGVDKH 388

Query: 405 WLSGFHVLALKDALPRSIHVHYSET------MDGLFLFIQSSLVDGDVVVV 449
            L      AL  A P  + V   ++      M+            GD V++
Sbjct: 389 VL----AQALVKAAP-HVPVVIVDSHDPEAAMEQAVSAAVQHADAGDTVLL 434


>gi|219558131|ref|ZP_03537207.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T17]
 gi|289570268|ref|ZP_06450495.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
 gi|289544022|gb|EFD47670.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T17]
          Length = 482

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA  VV     +              IPV         L KL        + T++     
Sbjct: 61  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP---AVLAKLMAG-----RTTLMVTGTH 112

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++             +G      G            D  + E   S    ++
Sbjct: 113 GKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLLQ 168

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L 
Sbjct: 169 YT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALA 223

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGI 288
            ++  LGI  +  +G                +       ++             +     
Sbjct: 224 QRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVP 282

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HMA N L  L     + A  D  +  L+ F     R +             + + Y  
Sbjct: 283 GRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAH 342

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++  
Sbjct: 343 HPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVLD 399

Query: 407 -SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
             G     L        + HV     Y      +   + ++   GDV+
Sbjct: 400 VYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 447


>gi|118137669|pdb|2F00|A Chain A, Escherichia Coli Murc
 gi|118137670|pdb|2F00|B Chain B, Escherichia Coli Murc
          Length = 491

 Score = 40.6 bits (93), Expect = 0.57,   Method: Composition-based stats.
 Identities = 47/396 (11%), Positives = 97/396 (24%), Gaps = 37/396 (9%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   + +     IPV        A   LA   R R     IAI G+ GKTTT   ++   
Sbjct: 91  DNPEIVAAHEARIPVI-----RRA-EXLAELXRFRHG---IAIAGTHGKTTTTAXVSSIY 141

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
           +        +             AR+     + I E   S    +      ++P +A++T
Sbjct: 142 AEAGLDPTFVNGGLVKA--AGVHARLGHG-RYLIAEADESDASFLH-----LQPXVAIVT 193

Query: 191 TIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS 249
            I   H   +    E +          L   G      DD     L  +         +S
Sbjct: 194 NIEADHXDTYQGDFENLKQTFINFLHNLPFYGRAVXCVDDPVIRELLPRVGRQTTTYGFS 253

Query: 250 FGKSKNADFQLR----------KWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMT 299
                  +   +          +  +   +  +    +  ++                  
Sbjct: 254 EDADVRVEDYQQIGPQGHFTLLRQDKEPXRVTLNAPGRHNALNAAAAVAVATEEGIDDEA 313

Query: 300 LGIVSILTADVDTAIK--ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
           +                       P  G+        + G      ++      +     
Sbjct: 314 ILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAXLVDDYGHHPTEVDATIKAARAGWPDK 373

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA 417
           +++    PH   R   +  D   +     +             I      G    +L   
Sbjct: 374 NLVXLFQPHRFTRTRDLYDDFANVLTQVDTLLXLEVYPAGEAPI-----PGADSRSLCRT 428

Query: 418 LPRSIHV--HYSETMDGLFLFIQSSLVDGDVVVVKS 451
           +     +          +   +   L   D+++V+ 
Sbjct: 429 IRGRGKIDPILVPDPARVAEXLAPVLTGNDLILVQG 464


>gi|169343556|ref|ZP_02864555.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
 gi|169298116|gb|EDS80206.1| FolC bifunctional protein [Clostridium perfringens C str. JGS1495]
          Length = 441

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 340 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEELYIKVKKYVKEVFKFKDYKDA 398

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S     D++++  S   
Sbjct: 399 YNKAYSLTNRDDLLLICGSLYM 420


>gi|326335820|ref|ZP_08201999.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691964|gb|EGD33924.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 321

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 22/126 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEA-FFAIKGPHYDGH-DFILH 59
           +T   +   I    IG      V G   I +    +   +  F        D H  +   
Sbjct: 23  YTLEQIATIIGSRYIG-DKDFPVLGMNEIHV----VREGDIVFV-------D-HPKYYDK 69

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           A+Q  A +V++N ++    G     +   +D     NKL    R   KA T++A T  +G
Sbjct: 70  ALQSKATVVLINKEVPCPEGKA---LLISEDPFRDFNKLTRFFRPFEKATTLVATTAKIG 126

Query: 119 KTTTKE 124
           + T  +
Sbjct: 127 ENTIIQ 132


>gi|167562362|ref|ZP_02355278.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis EO147]
 gi|167574341|ref|ZP_02367215.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           oklahomensis C6786]
          Length = 220

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E           L E+L+   +  V         L   A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE-----DDVLGQLEELLAGRPVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKMV 194


>gi|186477423|ref|YP_001858893.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           phymatum STM815]
 gi|226711890|sp|B2JHG2|MURD_BURP8 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|184193882|gb|ACC71847.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           phymatum STM815]
          Length = 504

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 74/296 (25%), Gaps = 12/296 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L       H   P  AVI  I   HL    G++  A+AK +IF      
Sbjct: 179 DVWVLELSSFQL----ETAHTFEPDAAVILNITQDHLDWHGGLDAYAAAKGKIFGKNTVR 234

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +         +     L    +    +  +             Q+         +
Sbjct: 235 VLNRDDARVMTLASSEQSGAQLVTFGVNEPVRDGDYGLLRDNGMIWLVQAQDRDATDEPA 294

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                           L  L     L                           L  G   
Sbjct: 295 PTRRRKSESTAPPDIGLKRLMPADALRIRGLHNATNALAAFALARAIGLPGAPLLHGLRE 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDLAE 394
              E +     +    +  +        G  +A L  + +       G+        LAE
Sbjct: 355 YRGEPHRVELIASIEGVDYVDDSKGTNVGATVAALDGLAQRVVLIAGGDGKGQAFDPLAE 414

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ +    V L G     ++ AL    I +    T++       +    GD V++
Sbjct: 415 PVTRW-CRCVMLIGRDAPQIRAALEHTGIAITDHATLEEATRAASAVAQPGDAVLL 469


>gi|222823731|ref|YP_002575305.1| hypothetical protein Cla_0725 [Campylobacter lari RM2100]
 gi|222538953|gb|ACM64054.1| conserved hypothetical protein [Campylobacter lari RM2100]
          Length = 313

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               + ++ I    +       V   SID   I     FFA    +   ++    A++ G
Sbjct: 1   MNISNFIELINAKVLNYGATSSVYDFSIDLNKIKQASVFFA---KN---NEQASFAIKLG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A  V+V+ ++  ++    +    VDD+  A+ +L            I
Sbjct: 55  A-YVIVS-EVKLNLEDKDVFYLQVDDLEEAIFRLFRFLCEEKSYEFI 99


>gi|289554061|ref|ZP_06443271.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
 gi|289438693|gb|EFD21186.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 605]
          Length = 438

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA  VV     +              IPV         L KL        + T++     
Sbjct: 17  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP---AVLAKLMAG-----RTTLMVTGTH 68

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++             +G      G            D  + E   S    ++
Sbjct: 69  GKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLLQ 124

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L 
Sbjct: 125 YT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALA 179

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGI 288
            ++  LGI  +  +G                +       ++             +     
Sbjct: 180 QRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVP 238

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HMA N L  L     + A  D  +  L+ F     R +             + + Y  
Sbjct: 239 GRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAH 298

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++  
Sbjct: 299 HPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVLD 355

Query: 407 -SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
             G     L        + HV     Y      +   + ++   GDV+
Sbjct: 356 VYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 403


>gi|194289782|ref|YP_002005689.1| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase
           [Cupriavidus taiwanensis LMG 19424]
 gi|226740718|sp|B3R2A7|LPXD_CUPTR RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|193223617|emb|CAQ69624.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Cupriavidus taiwanensis LMG 19424]
          Length = 363

 Score = 40.6 bits (93), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 20/105 (19%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FF--AIKGPHYDGHDFILHAV 61
           T   L        +G  P   + G++ +D     P E  F    +         ++  A+
Sbjct: 5   TLGQLATENGAQVVG-DPDLAITGLAPLD--QAGPGELSFLSNPL---------YLQQAL 52

Query: 62  QKGAGLVVVN----TDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
              AG V+V+      + A   +         +      ++A   
Sbjct: 53  DAKAGAVIVSAADLERVRAEGKADGRNWLVARNPYVCFARVAQRF 97


>gi|282850042|ref|ZP_06259424.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella parvula ATCC 17745]
 gi|294795182|ref|ZP_06760316.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella sp. 3_1_44]
 gi|282580231|gb|EFB85632.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella parvula ATCC 17745]
 gi|294453974|gb|EFG22349.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella sp. 3_1_44]
          Length = 343

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 28/155 (18%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SIAPQEAFFAIKGPHYDGHDFILH-AV 61
           T  +L   + G  IG      +      +R       Q   FAI G       ++ H A+
Sbjct: 4   TLQELANLVGGQLIG-DESIVITE----TRSFEQAVKQSITFAI-GE------YVEHIAL 51

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA-------RLRSKATIIAIT 114
            + AG V+V +++     +  +    VD+   A  ++           R      II   
Sbjct: 52  CQ-AGAVIVESEV----KNAPMAQIVVDNAKSAFAQVLEVFHPPVVVPREVHSTAIIGKN 106

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGV 149
            ++GK        +   +             +IG 
Sbjct: 107 VTLGKNVAIGAYCVINDNAVIGDNVTIRPYVYIGH 141


>gi|254490663|ref|ZP_05103848.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxidans DMS010]
 gi|224464119|gb|EEF80383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Methylophaga thiooxydans DMS010]
          Length = 449

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 68/372 (18%), Positives = 126/372 (33%), Gaps = 41/372 (11%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFEL 167
           ++A++G+ GKTTT  +L   L     +           GVP             F + E 
Sbjct: 105 VLAVSGTHGKTTTSSLLAWILEHAGMSP-----GFLIGGVPDNFGETARLGKTPFFVIEA 159

Query: 168 GMSHLGEIRFLTHLVRP--HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
                      +  V       VI  +   H   F  +  I      +   +   G I  
Sbjct: 160 DEYDTAFFDKRSKFVHYLARTLVINNLEFDHADIFDDLAAIQKQFHHLIRTVPSEGLIIS 219

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             + +  ++L            ++  +S   +   +     ++ S  EV   GK+  V  
Sbjct: 220 PQEKAIEQVLA--------MGCWTPRQSLGNESDWQATLLKNDGSEFEVSFAGKTGTVNW 271

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +G H   N L  +     +   V  A +ALS F   + R +      N   +    + 
Sbjct: 272 SMLGQHNVNNALAAIAAAHHVGVTVAHACEALSAFAGVKRRLELRGEVDNIRVY----DD 327

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNIS 402
           +  +P ++   I+ L   +  G  + +AVL    +  +MG    +    L +        
Sbjct: 328 FAHHPTAIATTIAGLR--AKIGNKKLVAVLEPRSNTMKMGVHQDALAQSLIQ------AD 379

Query: 403 HVWLS-GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY- 458
            V L     +      +      HV   +++D +   +Q+    GD +VV  SN  GF  
Sbjct: 380 RVLLLQDSDLKWSLKQVTDELGDHVSVFDSIDTIVKTLQTEAQQGDEIVV-MSNG-GFGG 437

Query: 459 ---RLINLLLEE 467
              R+++ L + 
Sbjct: 438 IHQRILDALEQR 449


>gi|167624560|ref|YP_001674854.1| FolC bifunctional protein [Shewanella halifaxensis HAW-EB4]
 gi|167354582|gb|ABZ77195.1| FolC bifunctional protein [Shewanella halifaxensis HAW-EB4]
          Length = 421

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 61/194 (31%), Gaps = 9/194 (4%)

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
                +     S  +   QG+  ++ +    Y    N    + ++  L   +   I A +
Sbjct: 220 YRVNSEFSYRCSDKDWHYQGQHFDLDNLPFPYLPQPNAATVIAVLEHLCPTISEDIIAKA 279

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
           V      +       LN     ++D ++N + A    +             RR+  L  M
Sbjct: 280 VGE---TQLAGRLECLNDSPRVIVDVAHNPHAARYLKSRLAAM------PKRRLIALCGM 330

Query: 379 CEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQ 438
            +  ++        A+V   Y        G     LK  +P          M   +  ++
Sbjct: 331 LKDKDVRSVLQELSADVDQWYLCDLSVPRGATAADLKAFMPAQTQASTYTDMSAAWHALR 390

Query: 439 SSLVDGDVVVVKSS 452
           + L   DVV+V  S
Sbjct: 391 AQLQPDDVVIVFGS 404


>gi|119953594|ref|YP_945804.1| UDP-N-acetylmuramate--L-alanine ligase [Borrelia turicatae 91E135]
 gi|119862365|gb|AAX18133.1| UDP-N-acetylmuramate--alanine ligase [Borrelia turicatae 91E135]
          Length = 486

 Score = 40.6 bits (93), Expect = 0.59,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 122/384 (31%), Gaps = 37/384 (9%)

Query: 77  SIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT 136
               L IP+         + K++           I + GS GKTTT   L +  +S+   
Sbjct: 110 EARELGIPILSYP---EFIGKISKKYYS------IGVAGSHGKTTTAAFLGLLFNSLGLQ 160

Query: 137 YACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
              I   +         + +    +  I E       E R       P++ V+T I   H
Sbjct: 161 PNVILGASVKD--FGDKSSLVGQSNIFIAETC-----EYRNHFLHFSPNMIVLTNIDYEH 213

Query: 197 LSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNA 256
           +  F   E + +   +    L+K G + +N D+     +K +        ++S G +  A
Sbjct: 214 VDFFENYEAVENVFLQYINNLKKNGILIINADEVNLLKIKNRIL-RKDIKVFSVGFNSLA 272

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           DF++ +++   E    +                       L+ + +       +  +   
Sbjct: 273 DFKIERFELIDEFLKFDFLGGIDIRLRSPLMHNVLNFALSLLAVKLFFEEHKKLVWSFDD 332

Query: 317 LSVFHPKEGRGKRYRCALNQGFF-TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
                 KE  G + R          +  + Y  +P  +++ +  L             +L
Sbjct: 333 RIKMMAKEYMGIKRRMEFIMEKDGVIYLDDYAHHPKEIESTLLGLKTFYKGR----RIIL 388

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------------FHVLALKDALPR-SI 422
             M      ++    +  +VL   N+  + L                   L  AL   + 
Sbjct: 389 DFMPHTFTRTKVLFGEFVKVL--SNVDVLILHNIYLSVREDFNPNKLSKELFLALKDLNQ 446

Query: 423 HVHYSETMDGLFLFIQSSLVDGDV 446
           +V++ + +     FI+  L   D+
Sbjct: 447 NVYFFKEVVDAVDFIKGLLKRNDL 470


>gi|15609289|ref|NP_216668.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Rv]
 gi|15841644|ref|NP_336681.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31793332|ref|NP_855825.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis
           AF2122/97]
 gi|121638034|ref|YP_978258.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148661968|ref|YP_001283491.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|148823361|ref|YP_001288115.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           F11]
 gi|167967845|ref|ZP_02550122.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           H37Ra]
 gi|215403539|ref|ZP_03415720.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           02_1987]
 gi|215431082|ref|ZP_03429001.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           EAS054]
 gi|215446382|ref|ZP_03433134.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T85]
 gi|224990528|ref|YP_002645215.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253798783|ref|YP_003031784.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|254232311|ref|ZP_04925638.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|254364957|ref|ZP_04981003.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254551190|ref|ZP_05141637.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289745425|ref|ZP_06504803.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289754262|ref|ZP_06513640.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289758272|ref|ZP_06517650.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|294993538|ref|ZP_06799229.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           210]
 gi|297634741|ref|ZP_06952521.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN 4207]
 gi|297731730|ref|ZP_06960848.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN R506]
 gi|306776402|ref|ZP_07414739.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|306780180|ref|ZP_07418517.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|306784925|ref|ZP_07423247.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|306789292|ref|ZP_07427614.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|306793620|ref|ZP_07431922.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|306803890|ref|ZP_07440558.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|306808462|ref|ZP_07445130.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|306968286|ref|ZP_07480947.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|306972515|ref|ZP_07485176.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|307080223|ref|ZP_07489393.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|307084805|ref|ZP_07493918.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|313659065|ref|ZP_07815945.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037857|sp|P65473|MURC_MYCBO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|54041507|sp|P65472|MURC_MYCTU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224704|sp|A1KKJ5|MURC_MYCBP RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|166224708|sp|A5U4H9|MURC_MYCTA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254766013|sp|C1AQ68|MURC_MYCBT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|2104326|emb|CAB08641.1| Probable UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Rv]
 gi|13881896|gb|AAK46495.1| UDP-N-acetylmuramate--alanine ligase [Mycobacterium tuberculosis
           CDC1551]
 gi|31618924|emb|CAD97029.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis
           AF2122/97]
 gi|121493682|emb|CAL72157.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124601370|gb|EAY60380.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis C]
 gi|134150471|gb|EBA42516.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148506120|gb|ABQ73929.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis H37Ra]
 gi|148721888|gb|ABR06513.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis F11]
 gi|224773641|dbj|BAH26447.1| UDP-N-acetylmuramate-L-alanine ligase [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|253320286|gb|ACT24889.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 1435]
 gi|289685953|gb|EFD53441.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis 02_1987]
 gi|289694849|gb|EFD62278.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis EAS054]
 gi|289713836|gb|EFD77848.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis T85]
 gi|308215190|gb|EFO74589.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu001]
 gi|308326949|gb|EFP15800.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu002]
 gi|308330384|gb|EFP19235.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu003]
 gi|308334218|gb|EFP23069.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu004]
 gi|308338014|gb|EFP26865.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu005]
 gi|308345192|gb|EFP34043.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu007]
 gi|308349498|gb|EFP38349.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu008]
 gi|308354127|gb|EFP42978.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu009]
 gi|308358069|gb|EFP46920.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu010]
 gi|308362006|gb|EFP50857.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu011]
 gi|308365639|gb|EFP54490.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis SUMu012]
 gi|323719307|gb|EGB28449.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis CDC1551A]
 gi|326903769|gb|EGE50702.1| UDP-N-acetylmuramate-alanine ligase murC [Mycobacterium
           tuberculosis W-148]
 gi|328458546|gb|AEB03969.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis KZN 4207]
          Length = 494

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA  VV     +              IPV         L KL        + T++     
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP---AVLAKLMAG-----RTTLMVTGTH 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++             +G      G            D  + E   S    ++
Sbjct: 125 GKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLLQ 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L 
Sbjct: 181 YT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALA 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGI 288
            ++  LGI  +  +G                +       ++             +     
Sbjct: 236 QRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HMA N L  L     + A  D  +  L+ F     R +             + + Y  
Sbjct: 295 GRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++  
Sbjct: 355 HPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVLD 411

Query: 407 -SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
             G     L        + HV     Y      +   + ++   GDV+
Sbjct: 412 VYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 459


>gi|317012811|gb|ADU83419.1| hypothetical protein HPLT_05135 [Helicobacter pylori Lithuania75]
          Length = 339

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|170764283|ref|ZP_02640360.2| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
 gi|170713818|gb|EDT26000.1| Mur ligase family protein [Clostridium perfringens CPE str. F4969]
          Length = 560

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 45/372 (12%), Positives = 117/372 (31%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 163 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 222

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G ++         +A+IT++A  H+       I ++   K     
Sbjct: 223 TNPQVEVGVLETARGGILKKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H G       N+L+++  +  +  ++   + +L            
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + + I  +       ++  +   G+    + 
Sbjct: 403 RQNIIELENFKIILD-YGHNPEAFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 455

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L  +    +   + +       G   L + + +   I+      V        +    
Sbjct: 456 KELGRIAGENS-DTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIK 514

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 515 KAISMAKEGDII 526


>gi|108563401|ref|YP_627717.1| hypothetical protein HPAG1_0976 [Helicobacter pylori HPAG1]
 gi|107837174|gb|ABF85043.1| hypothetical protein HPAG1_0976 [Helicobacter pylori HPAG1]
          Length = 339

 Score = 40.6 bits (93), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|262281543|ref|ZP_06059322.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257002|gb|EEY75741.1| hypothetical protein HMPREF0012_03490 [Acinetobacter calcoaceticus
           RUH2202]
          Length = 457

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 53/422 (12%), Positives = 112/422 (26%), Gaps = 42/422 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKN------ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           +        +         K              +K     + +       + +      
Sbjct: 229 VLEMGCWTPVIRTSLEANEKAALTAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVANA 288

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
              +A      +G+      +  +    +       G         +        ++   
Sbjct: 289 LATIAAAQH--VGVALEQACEALSNFGGVKRRMELLGTVNGIEVYDDFAHHPTAIDTTLD 346

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
                     + + I P     R+   G   +    S     D+        +       
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRM---GSHKDGLAHSARLADDVIWY-QPEGLDW----- 397

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
             +  + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+   
Sbjct: 398 -DLQPVIEAASN--HAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMNAL 452

Query: 469 PA 470
            A
Sbjct: 453 KA 454


>gi|168204898|ref|ZP_02630903.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
 gi|170663533|gb|EDT16216.1| FolC bifunctional protein [Clostridium perfringens E str. JGS1987]
          Length = 441

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-------ALPRSIHVHYSETMDGL 433
           +G L      ++ E +    +  V +   H    +D              V   +     
Sbjct: 340 LGVLGDKQVDEMVEEI-TRGVDKVVIVEPHSDRAEDIEELYIKVKKYVKEVFKFKDYKDA 398

Query: 434 FLFIQSSLVDGDVVVVKSSNSC 455
           +    S     D++++  S   
Sbjct: 399 YNKAYSLTNRDDLLLICGSLYM 420


>gi|145535379|ref|XP_001453428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421139|emb|CAK86031.1| unnamed protein product [Paramecium tetraurelia]
          Length = 2433

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 18/241 (7%), Positives = 46/241 (19%), Gaps = 23/241 (9%)

Query: 170  SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
            S +   +  +H    +  + +     H +     EE    K +                 
Sbjct: 1813 SDVHLCQRESHKCDQNCRICSDQKCDHKAGHYEKEEHLCNKQDHRCYDICQIKNCKRKCM 1872

Query: 230  S---FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                  E  K ++    ++      K    D      +   +          +  +    
Sbjct: 1873 KSFNHDEQHKCENDHPCMEKCQYCDKKCKKDLSDPHDRTNHDCLDNYCIHNCQLCQRRCC 1932

Query: 287  GIGYH-------MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                H         +N+                     + +  K    +  +        
Sbjct: 1933 QPHKHSQQKDKHFCENVHYCQQQCQEDGICKIDYEVVQAKWKTKSSEFQYTKYIQKDIGK 1992

Query: 340  TLI----------DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
             +            +  +      +      +Q  P          G    +G      H
Sbjct: 1993 QICQKQIPAGCDKHDGKHLCKEKTEKQFHQCNQQCPECNTYCDLQYGH---LGSHQSDRH 2049

Query: 390  I 390
             
Sbjct: 2050 R 2050


>gi|298293101|ref|YP_003695040.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
 gi|296929612|gb|ADH90421.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Starkeya novella
           DSM 506]
          Length = 460

 Score = 40.6 bits (93), Expect = 0.61,   Method: Composition-based stats.
 Identities = 57/374 (15%), Positives = 106/374 (28%), Gaps = 43/374 (11%)

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
                AITG+ GK+TT  +L      + K          + G  +     P      + E
Sbjct: 113 HPPFAAITGTNGKSTTTALLAH----LMKVGGRDAQIGGNFGPAILGLEPPKPGRVYVIE 168

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
                +     L   + P + ++  ++P HL     +E  A+ K  +   +E  GT  + 
Sbjct: 169 CSSYQID----LAPSLDPAVGILLNLSPDHLDRHGTMEHYAAVKERLVAQVEAGGTAVIG 224

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD +   +  +  A G   +    + + A             +         S+  +  
Sbjct: 225 VDDEWSRAIADRVEAAGRNVVRISVRERLAGGIWLDGD-TLNVTKNATTEFTLSLAGIGS 283

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H AQN          L    +     +  F     R +  R          +++S 
Sbjct: 284 LRGAHNAQNAAAAFAAARALGLAPEVIATGMRSFPGLAHRMEEVRTIGKV---LFVNDSK 340

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             N  + + A++    I     G+         E G      +           +   +L
Sbjct: 341 ATNADAAERALTSFEDIFWIAGGKP-------KEGGIAPLKPYFP--------RVRKAYL 385

Query: 407 SGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGD----VVVV---KSS------- 452
            G         L   +    S T++                  VV++    +S       
Sbjct: 386 IGVAAEDFAGTLGADVPHEISGTLEVAVESAARDAAASGLASPVVLLSPACASFDQFRNF 445

Query: 453 --NSCGFYRLINLL 464
                 F  L+  L
Sbjct: 446 EVRGDAFRTLVKAL 459


>gi|225873998|ref|YP_002755457.1| molybdopterin oxidoreductase [Acidobacterium capsulatum ATCC 51196]
 gi|225791390|gb|ACO31480.1| molybdopterin oxidoreductase [Acidobacterium capsulatum ATCC 51196]
          Length = 714

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 48  GPHYDGHD-----FILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           G +  G++     FI  A + GA LVV++      A++    IP+    D   AL  + V
Sbjct: 180 GANVHGNNIHLWPFIEEARRNGAKLVVIDPYQTRTAALADWHIPIHPGTDAALALGMMHV 239

Query: 101 AARL 104
             R 
Sbjct: 240 LVRD 243


>gi|208434909|ref|YP_002266575.1| hypothetical protein HPG27_955 [Helicobacter pylori G27]
 gi|208432838|gb|ACI27709.1| hypothetical protein HPG27_955 [Helicobacter pylori G27]
          Length = 335

 Score = 40.6 bits (93), Expect = 0.62,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|323703625|ref|ZP_08115268.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531397|gb|EGB21293.1| FolC bifunctional protein [Desulfotomaculum nigrificans DSM 574]
          Length = 437

 Score = 40.6 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 90/309 (29%), Gaps = 24/309 (7%)

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 + DF + E+    LG     T++V P ++VIT +   H+             A 
Sbjct: 131 YYFAQAETDFVVLEV---GLGGAIDSTNVVTPLVSVITNVTLDHMDYLGP---RVEDIAR 184

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +  G+ K G   +   D     +  +        +   G+         + ++  ++  +
Sbjct: 185 VKAGIIKKGVPVVTAADGVALEIIKQVAGENNSKLIQVGQDITWTPLSSESEKGYQEFLV 244

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +       + +   G    +  +  +       +       I A +V           R 
Sbjct: 245 KGLQNHYHVRLPLLGPHQQINASTAIA---AVEMLFRWGHHIPAQAVLAGLSKVRWPGRM 301

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
            + +   T+I +  + +  ++    ++           R  +L     +G L+      +
Sbjct: 302 EIVRQHPTVIIDGAHNHAGAVALRQALQQHFP-----HRDIILV----LGMLADKERAKV 352

Query: 393 AEVLSLYNISHVWLSGFHVLA-----LKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDV 446
              L+    + +     +  A     L D +      V   E +        S      +
Sbjct: 353 VAELAPLARTVIVTRSNNPRAGDWTRLADYVKVYLDDVMIEENVTEAVKKAVSLAHQDQL 412

Query: 447 VVVKSSNSC 455
           V +  S   
Sbjct: 413 VCITGSLYM 421


>gi|323488418|ref|ZP_08093665.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
 gi|323397925|gb|EGA90724.1| UDP-N-acetylmuramate--L-alanine ligase [Planococcus donghaensis
           MPA1U2]
          Length = 437

 Score = 40.6 bits (93), Expect = 0.63,   Method: Composition-based stats.
 Identities = 60/374 (16%), Positives = 112/374 (29%), Gaps = 48/374 (12%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
           +   +     L   +         L  L            +AITG+ GKT+T  ++   L
Sbjct: 73  DHPELVEARELGATIIR---YHEFLGDLMRQYVS------VAITGAHGKTSTTGLMAHVL 123

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVIT 190
              K     IG                 D  F + E        + +      P  A++T
Sbjct: 124 GGYKPVSYLIGDGTGVG---------QEDSHFFVAEACEYRRHFLAYH-----PDYAIMT 169

Query: 191 TIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            I   H   F+GI+++  A  E+ + ++K      + +         +  A      Y F
Sbjct: 170 NIDFDHPDYFTGIDDVFKAFEEMAQQVKKCIIACGDDEY------LQQIQAPTPVVYYGF 223

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G+  +   +    K     ++  V              G H   N L  + +    +   
Sbjct: 224 GEENDFQARNI-VKSVDGTTFDVVIRNEFFHTFKLPMFGDHAILNALAVISLCHYESIPA 282

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D   +    F   +      R         ++ + Y  +P  ++A +    Q  P  E  
Sbjct: 283 DIIQQQFEDFEGVKR-----RFTQTAIADRILIDDYAHHPTEIRATLQSARQKYPERE-- 335

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDA-------LPRSIH 423
              +          +Q+F  + A+ L+     HV+L      A + A       L   I 
Sbjct: 336 --LIAIFQPHTFTRTQTFLQEFADCLTEA--DHVYLCDIFGSAREKAGTLKIQDLAEKIE 391

Query: 424 VHYSETMDGLFLFI 437
             +   +D +    
Sbjct: 392 GSHILQLDEVASLA 405


>gi|194477145|ref|YP_002049324.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
 gi|171192152|gb|ACB43114.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase [Paulinella
           chromatophora]
          Length = 457

 Score = 40.2 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 120/387 (31%), Gaps = 50/387 (12%)

Query: 98  LAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSI---KKTYACIGSYNNHIGVPLTLA 154
           LA     +     IAITG+ GKTT   ++   LS           IG     + + L+  
Sbjct: 101 LAWEVLGK--IPWIAITGTNGKTTVTHLVNHLLSYAGLEAPMCGNIGFSATDLALSLSKK 158

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
           ++ +  D+ I EL    +        ++RP+I + TT+ P HL   + +    S K+ + 
Sbjct: 159 KINI-PDWLIVELSSYQI----ESAPVIRPNIVLWTTLTPDHLERHNTLFNYRSIKSSLV 213

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           E                 +L  + S        +     + A  +  K        ++  
Sbjct: 214 ENSNYQILNA-------DDLDLSSSAGSWPNANWVSTDLQFALSKNIKPVLWIADGYVTN 266

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           Q          + +G H  QN+LM   +   ++       +A   F     R    R   
Sbjct: 267 QDGPIFSADGFNLVGVHNQQNLLMAAAVGLKISLSPKIISEAFRCFPGVPHRLDLIRSYK 326

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                   ++S   N  + + AI  +       EG  I + G   + GE +         
Sbjct: 327 GIH---FYNDSKATNYDAAEVAIKAV-------EGPIIVLAGGQTKKGEANGWISQ---- 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDV--VVV 449
                    V L G     LK  L  S +   +H   ++           +      V+ 
Sbjct: 373 --LKAKAKAVVLFGQDKEQLKSLLQSSNYIGGIHCCSSLKEAVPLSLQLAIKHSCCSVLF 430

Query: 450 ---KSS---------NSCGFYRLINLL 464
               +S             F + +  L
Sbjct: 431 SPACASFDQYSDFVARGNHFCQEVETL 457


>gi|94969647|ref|YP_591695.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551697|gb|ABF41621.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 468

 Score = 40.2 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 104/354 (29%), Gaps = 32/354 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +IAI G+ GKTTT  ML+       +  + +             +    D    I E   
Sbjct: 108 VIAIAGTHGKTTTTSMLSWIFHHAGRNPSFLIGGIAEN---FGSSFAVADGAEFIIEGDE 164

Query: 170 SHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
                           P   ++T +   H   +  ++E+ +A   +   + ++G I    
Sbjct: 165 YDTAFFDKGPKFLHYFPKSLILTAVEFDHADIYKDLDEVKTAFKRLVNLVPRSGCILAWD 224

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-VHH 286
                     +        +  +G +  AD+++   +   E++   V   G+        
Sbjct: 225 GHPNV----DECVTKAFCKVERYGFTARADWRIVDVEHAPEKTSWRVLRNGEPWAHFEFP 280

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G +   N      + +    D D   +AL  F   + R +             I + +
Sbjct: 281 IAGDYNVLNATAAAAMAAHYAIDTDAIAEALHHFKSVKRRLEVKAEVKG----ITIIDDF 336

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P ++   +  L   S +   R  AVL         +   H  +  +        V L
Sbjct: 337 AHHPTAIAETLKALR--SRYAGRRLWAVLEPRSNTLRRNVFQHELVQSL---RIADRVVL 391

Query: 407 SG-------------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           +                   + +            + D +   I   L  GDVV
Sbjct: 392 AATFKSEAIPEKERLDPANVVAELNQLGTPAELHASADKIVAAIAPQLAAGDVV 445


>gi|78065119|ref|YP_367888.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           sp. 383]
 gi|122063237|sp|Q39JX2|MURD_BURS3 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|77965864|gb|ABB07244.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia sp.
           383]
          Length = 503

 Score = 40.2 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 70/298 (23%), Gaps = 14/298 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           P  A I  I   HL      +  A AK  IF      
Sbjct: 176 DVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDWHGSFDAYAQAKGRIFGATTTR 231

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQG 278
                +     F      + A    T       ++ D+            ++        
Sbjct: 232 VLNRDDAAVMKFAPAAGAADAPRTVTFGLNEPVQDGDYGLSRDNGIAWLVEAVDRDAPDE 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +          H        L     L                           L    
Sbjct: 292 AATTTRRRKRDAHTPDIAQKRLMPADALRIRGLHNAANALAAFALARAIDLPAAPLLHAL 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDL 392
                E++     +    +  +        G  +A L  + +       G+        L
Sbjct: 352 REYRGEAHRVEVIATIDDVDYVDDSKGTNVGATVAALDGLAQKIVLIAGGDGKGQDFAPL 411

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ +    V L G    A++D L    + +    T++G           GD V++
Sbjct: 412 VAPVARW-CRAVMLIGRDAPAIRDTLAETGVPLADHVTLEGAVHAAADLAEPGDAVLL 468


>gi|310779642|ref|YP_003967975.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ilyobacter
           polytropus DSM 2926]
 gi|309748965|gb|ADO83627.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Ilyobacter
           polytropus DSM 2926]
          Length = 439

 Score = 40.2 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 91/326 (27%), Gaps = 54/326 (16%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           D+D+ + EL    L          RP IA++  +AP HL  +   E+    K +I    +
Sbjct: 139 DLDYIVLELSSYQL----ENVKEFRPDIAMVINLAPDHLDRYEKSEDYYDTKFKIAAKQK 194

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                  N +         K          S    +  D          +          
Sbjct: 195 ANDYFIANMNCHESSKRLEKV--KSAIWKISLEGKEGCDLYPEDGWVVYKN--------- 243

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +      N+   L I ++         K     +  +    R    L  G 
Sbjct: 244 -RNIISVEKLSLKGRHNLENVLFIGAVAEIIGLKEEKLRDFLYNTKTLEHRMERFLEVGN 302

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S K AI                  G +   G + +   +        
Sbjct: 303 SLFINDSKGTNIESSKMAIEAYH--------------GCILICGGVDKKLDLKPLVSAIK 348

Query: 399 YNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVDGDV-----VVV 449
            ++S V+L G     L+  L +       +  S  ++     IQ ++   DV     +++
Sbjct: 349 SHVSRVYLIGELSDKLEQELIQGGYPESKIIKSNNLENSVRLIQKTI---DVNEKNNILL 405

Query: 450 K---SS---------NSCGFYRLINL 463
               +S             F  L+  
Sbjct: 406 SPATASFDQFKNFEVRGKTFKELVKK 431


>gi|163746127|ref|ZP_02153486.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
 gi|161380872|gb|EDQ05282.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Oceanibulbus
           indolifex HEL-45]
          Length = 466

 Score = 40.2 bits (92), Expect = 0.64,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 102/355 (28%), Gaps = 26/355 (7%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
              LA          ++A+TGS GK+TT  ++   L               +IG  +   
Sbjct: 108 FATLAWDHYD-VAPRVVAVTGSNGKSTTSALIHHILE----HVGRPCQLAGNIGRGVLDL 162

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
              VD +  + EL          L   + P +AV T ++P HL   +G+    +AK  +F
Sbjct: 163 DPAVDGEVVVLELSSYQ----TELARALTPDVAVFTNLSPDHLDRHAGMGGYYAAKRRLF 218

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
                   +    +     L    S       +              +            
Sbjct: 219 AEGGPDRAVIGVDEAEGRFLAGQLSEGPSDDRVIRISAETKLSGPGWQVFARKGFLSEYR 278

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
           + +      +    G   A N        +   A         + FH   G   R +   
Sbjct: 279 RGKQVGSIDLRSIQGLPGAHNHQNACAAYAACRALGLAPRVIEAAFHSFGGLPHRSQTVA 338

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   N  S   A++    I     G      G +  + E           
Sbjct: 339 EANGVRYVNDSKATNVDSAAKALAAFRNIRWICGGLEKE--GGLKGLAE----------- 385

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             +  ++   ++ G        A+  +       TM+       +   +GDVV++
Sbjct: 386 --AQGSVRKAYVIGREAAHF--AMQLTTEAEVCGTMEKAVARAAAEAEEGDVVLL 436


>gi|282850550|ref|ZP_06259929.1| bifunctional protein FolC [Veillonella parvula ATCC 17745]
 gi|282580043|gb|EFB85447.1| bifunctional protein FolC [Veillonella parvula ATCC 17745]
          Length = 435

 Score = 40.2 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 90/305 (29%), Gaps = 30/305 (9%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
             VD+ + E+    LG +   T++V P ++VIT +   H +     +EEIA  KA I + 
Sbjct: 134 QGVDYAVVEV---GLGGLLDSTNIVTPKVSVITNVTIDHQAYCGDTVEEIARHKAGIIKS 190

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T   +   +  E +  K HA        FG    +            Q       
Sbjct: 191 KVPVVTAAQDTPLNVIEDVAKKQHAKLYVFNKDFGIDSRS-------AVTGGQMITVSSN 243

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G H + N+   L  V +L  +     +                     
Sbjct: 244 DAAPAMLFTTMAGIHQSVNLACALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRG 303

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T I +  +    +   A++         +   +A+L D              +   +
Sbjct: 304 LDRTFIFDGAHNAAGAESFAMTYNELFKDTPKTVVMAILKD---------KDQEAIIREV 354

Query: 397 SLYNISHVWLSG------FHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVV 447
                  V +             L + + R++       +E+++            GD++
Sbjct: 355 VKSG-DTVLVVPAPTDRTEVPENLVEVIRRTVPKVTAQTAESVEAALALAYKHTKTGDII 413

Query: 448 VVKSS 452
            V  S
Sbjct: 414 AVCGS 418


>gi|115351226|ref|YP_773065.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           AMMD]
 gi|122323529|sp|Q0BGJ2|RLME_BURCM RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115281214|gb|ABI86731.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia ambifaria
           AMMD]
          Length = 220

 Score = 40.2 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E           L +VL    +  V      +      +
Sbjct: 90  ALDLLPMEPIADVHFIQGDFRE-----DDVLRQLEDVLEGRAVDLVI---SDMAPNLSGV 141

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 142 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|168206840|ref|ZP_02632845.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
 gi|170661728|gb|EDT14411.1| Mur ligase family protein [Clostridium perfringens E str. JGS1987]
          Length = 553

 Score = 40.2 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 121/372 (32%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     +++                           +  ++ 
Sbjct: 156 IPIVSITGTNGKTSTSRLIYKGFENLEYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 215

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G +R         +A+IT++A  H+       I ++   K     
Sbjct: 216 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 335

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H+G       N+L+++  +  +  ++   + +L            
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVNSLKNIECDVYNNIG 395

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + ++I  +       ++  +   G+    + 
Sbjct: 396 RQNIIELENFKIILD-YGHNPEAFEELFYLANKIKRNK------IISIVSSPGDRLDEYI 448

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L   ++  N   + +       G   L + + +   I+      V        +    
Sbjct: 449 KELGR-IAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIK 507

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 508 KAISMAKEGDII 519


>gi|193068240|ref|ZP_03049204.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E110019]
 gi|192958519|gb|EDV88958.1| tetrahydrofolate synthase/dihydrofolate synthase [Escherichia coli
           E110019]
          Length = 422

 Score = 40.2 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +  + +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAVMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|332088446|gb|EGI93564.1| bifunctional protein folC [Shigella boydii 5216-82]
          Length = 422

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                L    +    +++   +    +     D V+V  S
Sbjct: 364 TAGQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|317009648|gb|ADU80228.1| hypothetical protein HPIN_05105 [Helicobacter pylori India7]
          Length = 335

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 10/110 (9%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLSKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            ++   +    +    +    + D+  +LN L           ++ +  S
Sbjct: 59  GILYTGEY--PLSDKDVAWIRLKDIEHSLNHLFKFCL--LNERVVGVLLS 104


>gi|261492969|ref|ZP_05989512.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261311370|gb|EEY12530.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 454

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 93/319 (29%), Gaps = 31/319 (9%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  F + E     S   + R       P   +I  +   H   F  ++ I      +   
Sbjct: 153 NSPFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRT 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + ++G I     D   +             + ++ + +    Q   + +       + ++
Sbjct: 213 MPQSGCILSAIADQNVQDTLK---------MGNYSQLQFIGEQNEWFAKPLNADCSQFEV 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               ++            NM   L  ++           A           +R       
Sbjct: 264 FHLGVKQGEVHWSIIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEV 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI           G+   +L  + E    +        ++A
Sbjct: 324 NGITVYDDFAHH-----PTAIEATIDALRGKVGKNQRILA-VLEPRSNTMKMGVHKDEIA 377

Query: 394 EVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L  ++   V++    ++A     + + L +    ++S  +D L   +       D ++
Sbjct: 378 PSL--HDAEAVFVYQPDIIAWSVSEITNVLSQ--PAYWSANIDDLVDLVVKEAKPTDHIL 433

Query: 449 VKSSNSCGFYRLINLLLEE 467
           V  SN   F  +   LL +
Sbjct: 434 V-MSNG-AFGGIHQKLLAK 450


>gi|49474455|ref|YP_032497.1| UDP-N-acetylmuramate--L-alanine ligase [Bartonella quintana str.
           Toulouse]
 gi|59798260|sp|Q6G125|MURC_BARQU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|49239959|emb|CAF26364.1| UDP-N-acetylmuramate--alanine ligase [Bartonella quintana str.
           Toulouse]
          Length = 475

 Score = 40.2 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 124/381 (32%), Gaps = 46/381 (12%)

Query: 91  VLGA--LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIG 148
           V  A  L +L    R       IA+ G+ GKTTT  M+   L + +     I     +  
Sbjct: 94  VRRAEMLAELMRFRRA------IAVGGTHGKTTTTSMIAALLDAGRFDPMVINGGIIN-- 145

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
                       D+ + E   S           +   IAV+T I   HL ++     +  
Sbjct: 146 -AYGTNARMGSGDWMVVEADES-----DGTFLKLPADIAVVTNIDREHLDHYGSFCAVRE 199

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A  +  E +   G   L  D    + L ++        + ++G +  AD +        +
Sbjct: 200 AFRQFVENVPFYGFAVLCLDHPEVQSLASRIDDR---WVITYGTNPQADIRFLNLSMDGQ 256

Query: 269 QSWMEVQLQGKS-------MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFH 321
           ++  +V ++ +          +V    G H   N    + I   L    ++  K L+ F 
Sbjct: 257 KTHFDVFIRSRKTGKETELKNLVLPMSGQHNVSNATAAIAIAHELGISNESIKKGLAEFG 316

Query: 322 PKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV---------LSQISPHGEGRRI 372
             + R  +            I + Y  +P  +KA +           ++ + PH   R  
Sbjct: 317 GVKRRFTQTGSWRGIE----IFDDYGHHPVEIKAVLYAARESAKGRVIAIVQPHRYSRLY 372

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETM 430
            +  D       + +  I          I     +GF    L + +  + H  V     +
Sbjct: 373 HLFDDFAACFNDADTVLIAPIYGAGEAPI-----AGFGARELVEHIKMAGHRDVRLIHCL 427

Query: 431 DGLFLFIQSSLVDGDVVVVKS 451
           + + L + +    GD VV   
Sbjct: 428 EDVVLIVSTFAKPGDYVVFLG 448


>gi|332854694|ref|ZP_08435481.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332865574|ref|ZP_08436414.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
 gi|332727851|gb|EGJ59253.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013150]
 gi|332735226|gb|EGJ66303.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6013113]
          Length = 445

 Score = 40.2 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 55  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 100 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 156

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 157 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 217 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 274

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 275 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGMINGIEVYDDFAHHPTAIDTTLD 334

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 335 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 387

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 388 QPVIEAATN--HAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 442


>gi|110800740|ref|YP_697134.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
 gi|110675387|gb|ABG84374.1| Mur ligase family protein [Clostridium perfringens ATCC 13124]
          Length = 560

 Score = 40.2 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 120/372 (32%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 163 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 222

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G +R         +A+IT++A  H+       I ++   K     
Sbjct: 223 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H+G       N+L+++  +  +  ++   + +L            
Sbjct: 343 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLREVVDSLKNIECDVYNNIG 402

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + + I  +       ++  +   G+    + 
Sbjct: 403 RQNIIELENFKIILD-YGHNPEAFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 455

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L + ++  N   + +       G   L + + +   I+      V        +    
Sbjct: 456 KELGK-IAGKNSDTIIIKETFDRRGREELEITNLIKSGINEVENKSVEVLSIIDEEEAIK 514

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 515 KAISMAKEGDII 526


>gi|197105784|ref|YP_002131161.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
 gi|254766016|sp|B4RFG2|MURC_PHEZH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|196479204|gb|ACG78732.1| UDP-N-acetylmuramate--alanine ligase [Phenylobacterium zucineum
           HLK1]
          Length = 477

 Score = 40.2 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 76/419 (18%), Positives = 139/419 (33%), Gaps = 49/419 (11%)

Query: 53  GHDFILHAVQK--GAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKLAVAARLRSKAT 109
           GHD      +   GA  +V +T +       +      +  V  A   LA   RL+    
Sbjct: 61  GHD-----AKNVEGAYAIVYSTAVKPDNPEMVEGRARRLPLVRRA-EMLAELMRLQFS-- 112

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            IA+ G+ GKTTT  M+   L +       +     +              D+ + E   
Sbjct: 113 -IAVGGTHGKTTTTSMVAAILDAGGLDPTVVNGGIIN---AYGTNAKVGAGDWIVVEADE 168

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S           ++  +AV+T I P HL ++   E +  A  +  E +   G   +  D 
Sbjct: 169 S-----DGTFLKLKSTVAVVTNIDPEHLDHYGDFEAVKKAFQDFVENIPFYGFAAVCLDH 223

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK------SMEV 283
              + + A+        + ++G +  A+ +    +   E +   V +Q +        ++
Sbjct: 224 PEVQAMTARVENR---RLVTYGVNPQAEVRAHNIRMGPEGARFSVVIQPRDGGFISFDDL 280

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H  QN L  + +   L    D   K L+ F   + R      A        + 
Sbjct: 281 LLPMAGQHNVQNALAAIAVARELGVSPDAIRKGLAAFGGVKRRFTTTGVAGGVR----VV 336

Query: 344 ESYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
           + Y  +P  + + +           ++ + PH   R   +  D C     + +  +    
Sbjct: 337 DDYGHHPVEIASVLKAARAVSEGKVIAVVQPHRYTRLRDLFEDFCACFNDADTVIVADVY 396

Query: 395 VLSLYNISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 I  V   G     L + L R     V       GL   ++     GD+VV+  
Sbjct: 397 AAGEAPIEGV---GKES--LVEGLRRYGHRRVLPLPAPAGLAALVREEAHPGDLVVLLG 450


>gi|325104645|ref|YP_004274299.1| FolC bifunctional protein [Pedobacter saltans DSM 12145]
 gi|324973493|gb|ADY52477.1| FolC bifunctional protein [Pedobacter saltans DSM 12145]
          Length = 426

 Score = 40.2 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 5/42 (11%), Positives = 16/42 (38%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                +A    +  ++ +++       +++    D+V V  S
Sbjct: 377 SELAAEAAIYGLEGNHYDSIQKALETAKNNAKPDDLVFVGGS 418


>gi|78776533|ref|YP_392848.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497073|gb|ABB43613.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Sulfurimonas denitrificans DSM 1251]
          Length = 433

 Score = 40.2 bits (92), Expect = 0.69,   Method: Composition-based stats.
 Identities = 55/460 (11%), Positives = 125/460 (27%), Gaps = 88/460 (19%)

Query: 21  IVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
            +P      I+ +S+      AF  +   +     ++ +A   GA               
Sbjct: 4   EIPDEAFRYITENSQECDADTAFV-LTPQN---EKYLQNAKDNGA--------------- 44

Query: 81  LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
               +  + DV               K  I+ ITG+ GKTTT   +   L  +    A  
Sbjct: 45  --HSIINIKDVAKLFGI--------EKIKIVGITGTNGKTTTASAIYSFLLDLGYRVAMQ 94

Query: 141 GSYNNHIG---------VPLTLARMPVDVDFGIFE------LGMSHLGEIRFLTHLVRPH 185
           G+    +             +L      +   + E      + +S    ++     +   
Sbjct: 95  GTRGFFMNDRVIEEKTLTTPSLLNTYKHIYQAVSEKCDFFIMEVSSHAIVQKRVEGLNFE 154

Query: 186 IAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIK 245
           + ++T I   HL     + E  + K                        L  K       
Sbjct: 155 LKILTNITQDHLDFHKTLGEYIAVKNSF--------------FQDDGRKLINKDETKSSF 200

Query: 246 TI---YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGI 302
                +++G   +A ++L  +   +  S +                 +++   M      
Sbjct: 201 NFKNTFTYGIENSATYRLIAYSLNNASSGIIQHFSEVVPFTSSLHGFFNLYNLMAAIAAT 260

Query: 303 VSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQ 362
             +    ++     +  F    GR ++   + N     ++D ++  +             
Sbjct: 261 HLLSGKKLEEVTAVVDNFAGVSGRMEQVSESPN----VIVDFAHTPDGI--------QQV 308

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           ++   E   + V G     G         L   ++      ++++  +            
Sbjct: 309 LNALKEKELLVVFGA----GGDRDRTKRPLMGRVAASLAKKLYITSDNPRTEDPQDIVND 364

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           + + +     V              S   + +VVV+  K 
Sbjct: 365 ILEGIQDKSIVQVELNRRKAIENALSEQKENEVVVILGKG 404


>gi|299822723|ref|ZP_07054609.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
 gi|299816252|gb|EFI83490.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria grayi DSM 20601]
          Length = 440

 Score = 40.2 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 105/387 (27%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L + V         L +           T IAITGS GKT+T  +L+  L 
Sbjct: 74  HEEIVKAKELGLTVIR---YHKFLGQFIENY------TSIAITGSHGKTSTTGLLSHVLE 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
            IK T   IG                   ++   E        + +      P  A++T 
Sbjct: 125 GIKPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAYS-----PTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++    A    G +    +    DD     L           I  FG
Sbjct: 171 IDWDHPDYFKSVDDVF--DAFQTMGSQVKKAVIALGDDEQLRRL------DLDIPIVYFG 222

Query: 252 KSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +N +F  +   + +  + +       K         G H   N L  + +       +
Sbjct: 223 FGENNEFIAKNVIKKTTGTVFDAYHFDQKLGTFEIPTYGDHNVMNALSVIALTDYEGLPM 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
            + I+ L  F   + R             +         +             V++   P
Sbjct: 283 KSVIEGLKTFEGVKRRFSISEKGNQVLVDDYAHHPSEIRATINAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    E   L+   ++ D+               G           +  H+
Sbjct: 343 HTFTRTQTFLQGFAESLNLADEVYLCDIFGSAREKTGK--LTIGDLAAKT-----KGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
                 + L  +         V++   
Sbjct: 396 IKEAHTEELLRY------PEAVILFMG 416


>gi|2463563|dbj|BAA22556.1| MURD [Staphylococcus aureus]
          Length = 269

 Score = 40.2 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 8/145 (5%)

Query: 88  VDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI 147
           V   L  L ++ ++  + S+A IIA+TG+ GKTT   ++       + T    G+     
Sbjct: 92  VKRGLKILTEVELSYLI-SEAPIIAVTGTNGKTTVTSLIGDMFKKSRLTGRLSGNIGY-- 148

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
            V   +A+     D+ + EL    L  I       +PHIA+IT I  AHL     +E   
Sbjct: 149 -VASKVAQEVKPTDYLVTELSSFQLLGIEKY----KPHIAIITNIYSAHLDYHENLENYQ 203

Query: 208 SAKAEIFEGLEKTGTIFLNYDDSFF 232
           +AK +I++   +   +  NY     
Sbjct: 204 NAKKQIYKNQTEEDYLICNYHQRQV 228


>gi|123967558|ref|YP_001008416.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           AS9601]
 gi|123197668|gb|ABM69309.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 40.2 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 109/367 (29%), Gaps = 34/367 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L  L          T  A+ GS GKT+T   L+  L    +  + I         P+ 
Sbjct: 87  EILAMLMRTY------TSFAVAGSHGKTSTSTFLSTILELCTRNSSSITGGII----PIY 136

Query: 153 LARMP-VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
            +     +  + + E+  S         +  +  I +I  I   H  +FS + E+  +  
Sbjct: 137 NSNCHLENTKYLVAEVDES-----DGTINKYKSDIGIINNIDFDHCDHFSNLSEVICSFN 191

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
              +  +K    F     S       K      K +         + +    K     + 
Sbjct: 192 SFAKNSKKLLLNFDCETSSNNFYSNFKWSNTTAKNVTYAIIPTEINARYTIGKYYENGNL 251

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +          +     G H   N+   +    ++  D     K +      + R +   
Sbjct: 252 IG--------SLKIPIPGLHNLSNITAAIAASRMIGVDFIEIKKNIKYLKLPKKRFEFRG 303

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +  +       N    ++K    ++ Q   +   +R  +           + F  +
Sbjct: 304 QIDERSLYDDYAHHPNEIKETIKLGRLLIQQKHNNECQQRRLIAIFQPHRYSRVKQFTKE 363

Query: 392 LAEVLSLYNISHV---WLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSL 441
            AE LS  ++ +V   + +G           + D +  ++ +V Y      +        
Sbjct: 364 FAEELSKADVIYVTSIYGAGEGNEEKITSKMITDLIYKKNENVSYINNYYEVTKNFYELT 423

Query: 442 VDGDVVV 448
             GD+++
Sbjct: 424 QKGDLIL 430


>gi|260187151|ref|ZP_05764625.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           CPHL_A]
 gi|289447780|ref|ZP_06437524.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
 gi|289420738|gb|EFD17939.1| UDP-N-acetylmuramate-alanine ligase MurC [Mycobacterium
           tuberculosis CPHL_A]
          Length = 494

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA  VV     +              IPV         L KL        + T++     
Sbjct: 73  GATAVVTTHAAIPKTNPELVEARRRGIPVVLRP---AVLAKLMAG-----RTTLMVTGTH 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++             +G      G            D  + E   S    ++
Sbjct: 125 GKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLLQ 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L 
Sbjct: 181 YT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVSGGALVVCTDDPGGAALA 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGI 288
            ++  LGI  +  +G                +       ++             +     
Sbjct: 236 QRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HMA N L  L     + A  D  +  L+ F     R +             + + Y  
Sbjct: 295 GRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++  
Sbjct: 355 HPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVLD 411

Query: 407 -SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
             G     L        + HV     Y      +   + ++   GDV+
Sbjct: 412 VYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 459


>gi|194432829|ref|ZP_03065113.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella
           dysenteriae 1012]
 gi|194418817|gb|EDX34902.1| tetrahydrofolate synthase/dihydrofolate synthase [Shigella
           dysenteriae 1012]
 gi|320178710|gb|EFW53673.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Shigella boydii ATCC 9905]
 gi|332090176|gb|EGI95275.1| bifunctional protein folC [Shigella dysenteriae 155-74]
          Length = 422

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 12/100 (12%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQ------SFH-IDLAEVLS--LYNISHVWLS---GFHVL 412
            H       + G M  + +  +        H  D+A  L+     +   + +   G    
Sbjct: 304 AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGA 363

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                L    +    +++   +    +     D V+V  S
Sbjct: 364 TAGQLLEHLGNGKSFDSVAQAWDAAMADAKAEDTVLVCGS 403


>gi|253682183|ref|ZP_04862980.1| bifunctional protein FolC [Clostridium botulinum D str. 1873]
 gi|253561895|gb|EES91347.1| bifunctional protein FolC [Clostridium botulinum D str. 1873]
          Length = 436

 Score = 40.2 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 33/315 (10%), Positives = 90/315 (28%), Gaps = 28/315 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD+ + E+    LG     T++++P ++VI +I+  H++      ++     E    ++
Sbjct: 135 SVDYAVIEV---GLGGRLDSTNVIKPILSVIASISYDHMNILGN--DLREIAYEKAGIIK 189

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ---SWMEVQ 275
                 L         +           +                    E+     + + 
Sbjct: 190 YKVPTVLYPQQENVGKVIEDVCKDKKAELIKVPGDCVEFLSCSDKILNEEERRVQNIIIH 249

Query: 276 LQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
            + +   +    +G H   N    +  +  L            +    + +       LN
Sbjct: 250 TKSQRYYINLSLLGKHQLLNCATAIYAIEKLKELGVLVKDKSIIEGLLKVKWMGRFEILN 309

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
           +    +ID ++N +                +           +  +G L+     ++ E 
Sbjct: 310 KKPLIVIDGAHNIDGIKKLKESINTYLEYKNI----------ILILGILADKQVENMVEA 359

Query: 396 LSLYNISHVWLS------GFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           ++      V         G     L   + + + +    E+    +        + D+++
Sbjct: 360 ITPMA-QKVICVTPNSERGEIATELMKVVKKYNKNCEVVESYKDAYRTALKYCEEDDLLL 418

Query: 449 VKSSNSC--GFYRLI 461
           +  S        ++I
Sbjct: 419 ISGSLYMIGDMRKVI 433


>gi|291618220|ref|YP_003520962.1| FolC [Pantoea ananatis LMG 20103]
 gi|291153250|gb|ADD77834.1| FolC [Pantoea ananatis LMG 20103]
 gi|327394614|dbj|BAK12036.1| FolC bifunctional protein [Pantoea ananatis AJ13355]
          Length = 422

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 5/47 (10%), Positives = 16/47 (34%)

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           L+G    + +  +           ++  +   +      D+++V  S
Sbjct: 357 LAGPRGASAEQLMAHVTSAQAFADVEQAWHQARQQAEAQDIILVCGS 403


>gi|254482444|ref|ZP_05095683.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2148]
 gi|214037135|gb|EEB77803.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [marine gamma proteobacterium HTCC2148]
          Length = 455

 Score = 40.2 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 66/414 (15%), Positives = 124/414 (29%), Gaps = 37/414 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G     V   + A +   S P +  ++VL                 ++A +G+
Sbjct: 69  VGNALARGNPA--VEYMLNAGLNYTSGPQWLAENVLA-------------GKWVLAASGT 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ML      ++      G     +     L+      DF + E          
Sbjct: 114 HGKTTTSSMLA---WILEYAGMAPGFLIGGVPADFGLSARTGSTDFFVVEADEYDTAFFD 170

Query: 177 FL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP   VI  +   H   F  I  I      +   +   G I      +  + 
Sbjct: 171 KRSKFVHYRPRTLVINNLEFDHADIFPDIAAIQRQFHHLVRTVPSDGKIVYPRATASIDE 230

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
             A+     +      G        +       E S                    +   
Sbjct: 231 TLAQGCWSEMCATSIAGAGHWNAELIENDGSVFEVSVGGGDPVLVRWTHCGLHNVENALA 290

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            M     +  +       + +AL+ F   + R +             + + +  +P ++ 
Sbjct: 291 AMAAAHHVGVLPR----VSAEALAEFRGVKRRLELLGKVAG----VAVYDDFAHHPTAI- 341

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA- 413
              + L  +   G G R+  L +              LAE  S  +   V+      +  
Sbjct: 342 --ATTLQGLRARGGGGRLIALIEPRSNTMRMGEHRARLAE--STRDADRVYWFQPEGMDW 397

Query: 414 -LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
            L+D + +S     +  +D L   + S +  GD VV+  SN   F  + + +L 
Sbjct: 398 SLQDVVDKSSVATLASDIDELVAEVISEVQTGDQVVI-MSNGS-FGGIHDKILA 449


>gi|260201272|ref|ZP_05768763.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
          6-diaminopimelate-D-alanyl-D-alanyl ligase MurF
          [Mycobacterium tuberculosis T46]
          Length = 65

 Score = 40.2 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQ----GFVNG-ISIDSRSIAPQ 40
          M  L T   + + + G    I PQ      V G +  DSR+I P 
Sbjct: 1  MIEL-TVAQIAEIVGGAVADISPQDAAHRRVTGTVEFDSRAIGPG 44


>gi|57167837|ref|ZP_00366977.1| conserved hypothetical protein [Campylobacter coli RM2228]
 gi|57020959|gb|EAL57623.1| conserved hypothetical protein [Campylobacter coli RM2228]
          Length = 315

 Score = 40.2 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + I  + +       V G ++    +    AFF     +      I+ AVQKG
Sbjct: 1   MNISNLSELIHANMLNEGSVLSVTGFALSLHELKNGFAFF----SNN--KKEIIQAVQKG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++   ++   I    I    VD++  AL KL        +   IA+
Sbjct: 55  AFAIISEHELC--IDDKEIYYLQVDNLESALIKLLRFLCEEKECEFIAL 101


>gi|296532819|ref|ZP_06895494.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
 gi|296266856|gb|EFH12806.1| UDP-N-acetylmuramate--L-alanine ligase [Roseomonas cervicalis ATCC
           49957]
          Length = 478

 Score = 40.2 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 80/417 (19%), Positives = 132/417 (31%), Gaps = 53/417 (12%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSI----PVFGVDDVLGALNKLAVAARLRSKA 108
           GHD    A   GA  VVV +  V       +     +  V  V  A   LA   RL+   
Sbjct: 59  GHD----AGNLGAAQVVVTSTAVKRDNPEVVAARQRLIPV--VRRA-EMLAELMRLKWG- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IAI G+ GKTTT  ++   L + K     I     +            + D+ + E  
Sbjct: 111 --IAIGGTHGKTTTTSLVATVLEAAKLDPTVINGGIIN---AYGTNTRLGEGDWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +    AV+T +   HL ++   E +    A+    +   G   L  D
Sbjct: 166 ES-----DGSFLRLPAVAAVVTNMDAEHLDHWGTEEAMKQGYAQFVGNIPFYGFAVLCAD 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------M 281
               + +         + + ++G S  AD +  +       +  EV +Q +         
Sbjct: 221 HPNVQAMIPHL----DRRLITYGFSPQADVRAERLITDRMGATFEVTVQDRLTGRSRSLK 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +    +G H  QN L  + +   +  D  T   AL  F   + R  R            
Sbjct: 277 PMRLPMLGQHNVQNALAAIAVGIEMDIDEGTIRSALLGFKGVKRRFTRVGEVNG----VQ 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN- 400
           I + Y  +P  + A +           G R  +           +    +  + ++    
Sbjct: 333 IIDDYGHHPVEIAAVLKA-----ARQAGARDVIAVVQPHRYSRLKQLFEEFCQCMNDAGT 387

Query: 401 --ISHVWLSGF------HVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
             ++ V+ +G          AL D L    H         D L   I +    GD V
Sbjct: 388 VIVADVYAAGEQPIPGADRDALIDGLRAHGHRSVVPLPGPDSLPEMINAIAKPGDYV 444


>gi|262166568|ref|ZP_06034305.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
 gi|262026284|gb|EEY44952.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Vibrio mimicus VM223]
          Length = 269

 Score = 40.2 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 94/289 (32%), Gaps = 30/289 (10%)

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIY 248
           +  +   H   F  +E I      +   +   G I     D     +  +      +   
Sbjct: 1   MNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVFKRGCWSETEFSG 60

Query: 249 SFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTA 308
             G+ +       +        +  +    +  +V    +G H   N LM +     +  
Sbjct: 61  EQGEWQA------EKITADGSQFHVLLHGERVGQVNWSLVGDHNVSNALMAIAAARHVGV 114

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGE 368
             + A +A           KR      +     + + +  +P +++  +++    +  G+
Sbjct: 115 APELACEA----LGLFVNTKRRLELKGEINGVAVYDDFAHHPTAIE--LTLGGLRNKVGD 168

Query: 369 GRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-HVLALKDALPRSI-- 422
            + IAVL       ++G   ++         SL++   V+L    ++    + + +    
Sbjct: 169 KKIIAVLEPRSATMKLGVHKETL------AASLHSADSVYLYQPSNIPWSVEEVAKQCAQ 222

Query: 423 HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
               S  MD     I      GD ++V  SN  GF     +L+  L ++
Sbjct: 223 PAQVSANMDEFVAMIAKEAKAGDQILV-MSNG-GFEGIHGKLMAALQQK 269


>gi|298491728|ref|YP_003721905.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase ['Nostoc azollae'
           0708]
 gi|298233646|gb|ADI64782.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase ['Nostoc azollae'
           0708]
          Length = 456

 Score = 40.2 bits (92), Expect = 0.75,   Method: Composition-based stats.
 Identities = 56/362 (15%), Positives = 108/362 (29%), Gaps = 31/362 (8%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + ++ +A R       +AITG+ GKTTT  +      +             +IG+   
Sbjct: 91  ETIGEIELAWRHLQNIPWVAITGTNGKTTTTSLTAAIFQAAGLNAP----ACGNIGMAAC 146

Query: 153 LARM-PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +     D+ I EL    +      +  + P I + TT  P HL+    +E   + KA
Sbjct: 147 EVALSVQKPDWIIGELSSYQI----ESSVTLSPPIGIWTTFTPDHLARHKTLENYYNIKA 202

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
           ++            +   +         H     T+              +     E+  
Sbjct: 203 KLLNNSHLQIFNGDDIYLNKVG--LNHWHNAYWTTVKGPEFLIGEKGFYMENGWVIEKLS 260

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                Q          +G H  QN+LM++    +   +++    A+  F     R     
Sbjct: 261 ATSTSQPIVEVSALRMVGEHNQQNLLMSVAAARLGGINIEAISHAVHEFPGVTHR---LE 317

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     I++S   N  + +  ++ +       +   I + G   + G+ +   +  
Sbjct: 318 HICTWEGIDFINDSKATNYDAAEVGLASV-------KSPVILIAGGEAKAGDDTGWLNKI 370

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLV--DGDVV 447
            A+         V L G         L      +    ETM                 VV
Sbjct: 371 QAKAA------TVLLIGNAAPTFAQRLEEVGYTNFEIIETMAKAVPKSAELAKQYQASVV 424

Query: 448 VV 449
           ++
Sbjct: 425 LL 426


>gi|18311428|ref|NP_563362.1| hypothetical protein CPE2446 [Clostridium perfringens str. 13]
 gi|18146112|dbj|BAB82152.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 553

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 119/372 (31%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 156 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 215

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G +R         +A+IT++A  H+       I ++   K     
Sbjct: 216 TNPQVEVEVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 335

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H+G       N+L+++  +  +  ++   + +L            
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 395

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + + I  +       ++  +   G+    + 
Sbjct: 396 RQNIIELENFKIILD-YGHNPEAFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 448

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L   ++  N   + +       G   L + + +   I+      V        +    
Sbjct: 449 KELGR-IAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIKNKSVEVLSIIDEEEAIK 507

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 508 KAISMAKEGDII 519


>gi|260553791|ref|ZP_05826061.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
 gi|260405095|gb|EEW98595.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl [Acinetobacter sp.
           RUH2624]
          Length = 457

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 121/420 (28%), Gaps = 40/420 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGHAIGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPA 351
           N L T+     +   ++ A  ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACDALSNFGGVKRRMELLGTVNGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     D+        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADDVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFY----RLINLLLEE 467
             + +A         S ++D +   I +   +GD VV+  SN  GF     +LIN L  +
Sbjct: 400 QPVIEAASN--RAQVSRSLDEIINRIVNEAGEGDAVVI-MSNG-GFGGLHQKLINALKAK 455


>gi|224437747|ref|ZP_03658694.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 455

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 49/428 (11%), Positives = 115/428 (26%), Gaps = 58/428 (13%)

Query: 60  AVQKGAG---LVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAIT 114
           A++ G      ++V +    +      P    ++++ +  L K+ + +       I+ IT
Sbjct: 24  ALENGVVKEEALLVRSKQNMAFIPSDFPQ---ENLIESCDLGKVLLDSIPGENPRIVGIT 80

Query: 115 GSVGKTTTKEMLTIALSSIKKTY----ACIGSYNNHIGVP-------------LTLARMP 157
           G+ GKTTT  ++   L  +              N     P                    
Sbjct: 81  GTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFAKA 140

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D+ I E+  S    I+     +   + ++T I   HL     +EE    K   FE  
Sbjct: 141 KGCDYFIMEV--SSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 198

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                                 +       Y   K  +        +   +        +
Sbjct: 199 GLKLINADEKYAQC-----QDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNK 253

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S E        +   N+   L  ++ +    +  +  ++      G        ++  
Sbjct: 254 ECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHK 313

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++  +         +          +   V G     G              +
Sbjct: 314 PLVIVDFAHTHDG--------MKQIFESFRHQKIAVVFGA----GGDRDKSKRPKMGACA 361

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSI--HVHYSE-TMDGLFLFIQSSLVDGD 445
                 ++++  +            +   LP+     +   E       +   + L + +
Sbjct: 362 FEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENE 421

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 422 VLLILGKG 429


>gi|188995369|ref|YP_001929621.1| putative folylpolyglutamate synthase [Porphyromonas gingivalis ATCC
           33277]
 gi|188595049|dbj|BAG34024.1| putative folylpolyglutamate synthase [Porphyromonas gingivalis ATCC
           33277]
          Length = 428

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           + A    +  +   ++       +      D + V  SN      ++  LLEEF 
Sbjct: 379 QQAAAFGLVGNTYSSIREALEAARREAHADDFIFVGGSNF-----IVADLLEEFK 428


>gi|172060240|ref|YP_001807892.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
 gi|226703284|sp|B1YMW2|RLME_BURA4 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|171992757|gb|ACB63676.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia ambifaria
           MC40-6]
          Length = 220

 Score = 40.2 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E           L +VL    +  V      +      +
Sbjct: 90  ALDLLPMEPIADVHFIQGDFRE-----DDVLRQLEDVLEGRAVDLVI---SDMAPNLSGV 141

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 142 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|319776146|ref|YP_004138634.1| folylpolyglutamate synthase [Haemophilus influenzae F3047]
 gi|317450737|emb|CBY86957.1| folylpolyglutamate synthase [Haemophilus influenzae F3047]
          Length = 434

 Score = 40.2 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 94/298 (31%), Gaps = 12/298 (4%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V  H+AVIT+I   H        +     A    G+       +  + +
Sbjct: 143 GLGGRLDATNIVDSHLAVITSIDIDHTDFLG---DTREDIAFEKAGIFCENCPVVIGEPN 199

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + +  ++  L  +                   Q  +     +      +      +  
Sbjct: 200 VPQTMLDQAEKLHCQVARRDVDWLFEQNAENWQWQNKKVRLENLPFCQIPLANAATALAA 259

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                  ++   +     +V+   +  ++   K  +   Y     +   T+I +    NP
Sbjct: 260 VQCLPFDISEQTLRKSLQEVELVGRFQAIKTDKREKLADYLGVPVETLPTIIVDV-GHNP 318

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-GF 409
            + K     L+ +  + EG+ IAV G + +        H  L  ++  ++   +    G 
Sbjct: 319 HAAKYLSEKLTALKCNIEGKMIAVCGMLKDKDANGVFEH--LTPIIDEWHCVTLGGYRGQ 376

Query: 410 HVLALKDALP---RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSN--SCGFYRLIN 462
               L D L     +I      ++         S V  DVV+V  S      F+ ++ 
Sbjct: 377 SGDELADKLKSHFPNIQATSDNSVMDGVRTALKSAVKNDVVLVFGSFHTVAEFWAVVE 434


>gi|119383948|ref|YP_915004.1| hypothetical protein Pden_1203 [Paracoccus denitrificans PD1222]
 gi|119373715|gb|ABL69308.1| hypothetical protein Pden_1203 [Paracoccus denitrificans PD1222]
          Length = 126

 Score = 40.2 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHY 426
           E+G+ +  +H  LA  +       V L G  +  L D L +S     
Sbjct: 32  ELGKDALRYHRGLAAQILKIRPDEVLLCGPLMQELWDELSKSGAGRV 78


>gi|187477433|ref|YP_785457.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
 gi|123513953|sp|Q2KVR5|RLME_BORA1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|115422019|emb|CAJ48541.1| ribosomal RNA large subunit methyltransferase j [Bordetella avium
           197N]
          Length = 219

 Score = 40.2 bits (92), Expect = 0.77,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 383 ELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMDGLFLFIQSSL 441
              +  H +L   +  + +  V         L    +  S  + +   +     F  + L
Sbjct: 103 RDDEVLH-ELERRVGNHAVDLVIS--DMAPNLSGVGVADSARIQHVCDL--ALEFSCAHL 157

Query: 442 VDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               V++VK+ +  GF +++    + F 
Sbjct: 158 KPNGVLIVKAFHGSGFSQIVQSFKQRFK 185


>gi|312898383|ref|ZP_07757773.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Megasphaera micronuciformis F0359]
 gi|310620302|gb|EFQ03872.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Megasphaera micronuciformis F0359]
          Length = 340

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 26/132 (19%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVN---GISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
           T  +L Q + G  IG      ++   G++         +  FA++       +++     
Sbjct: 4   TVKELAQFLGGTVIG-DENREISDFKGLA----EAGSDDISFAVEPYT----EYLPQVH- 53

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT-------IIAITG 115
             AG V+   +  A        +  V++   A +KL      R           ++  + 
Sbjct: 54  --AGAVITEKEYPAGDN----TLVLVENPRLAFSKLLELFHPRQSVKQGIHPTAVVDESA 107

Query: 116 SVGKTTTKEMLT 127
           ++G+ T      
Sbjct: 108 TIGENTAVMAYA 119


>gi|182626009|ref|ZP_02953772.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
 gi|177908716|gb|EDT71227.1| Mur ligase family protein [Clostridium perfringens D str. JGS1721]
          Length = 560

 Score = 40.2 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 46/372 (12%), Positives = 116/372 (31%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 163 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 222

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G +R         +A+IT++A  H+       I ++   K     
Sbjct: 223 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 282

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 283 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDENVIFFDG 342

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H G       N+L+++  +  +  ++   + +L            
Sbjct: 343 KDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 402

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP + +    + + I  +       ++  +   G+    + 
Sbjct: 403 RQNIIELENFKIILD-YGHNPEAFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 455

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L  +    +   + +       G   L + + +   I       V        +    
Sbjct: 456 KELGRIAGENS-DTIIIKETFDRRGREKLEITNLIKSGIKEVENKSVEVLSIIDEEEAIK 514

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 515 KAISMAEEGDII 526


>gi|325578748|ref|ZP_08148795.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159572|gb|EGC71704.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 451

 Score = 40.2 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 93/316 (29%), Gaps = 21/316 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           + +F + E                   P   +I  I+  H   F  +  I      +   
Sbjct: 152 ESEFFVIEADEYDTAFFDKRSKFVHYNPKTLIINNISFDHADIFDDLHAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  TG +    D+   +           + I    +           +            
Sbjct: 212 IPSTGRVLSFADEQSVKETLNMGCWSEQQLIGKGKEWFAERITNDCSEFAV------FHH 265

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
             K  EV  + +G H   N LM +         ++ A +A           KR      +
Sbjct: 266 GEKVAEVKWNIVGQHNMHNALMAIAAAYHAGVKIEDACQA----LGSFINAKRRLEVKGE 321

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                + + +  +P ++ A ++ L      G G RI  + +             ++A  L
Sbjct: 322 VNGITVYDDFAHHPEAILATLTALRD--KVGGGVRILAVLEPRSNTMKMGVHKDEIAPAL 379

Query: 397 SLYNISHVWLSGFHVL--ALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                  V++     +   + +   + +   HY+  +D L   I +     D ++V  SN
Sbjct: 380 GRA--DAVFMLQPDNIPWDVAEIAGQCVQPAHYTGNVDKLVDMIVAEAKPTDHILV-MSN 436

Query: 454 SCGFYRLINLLLEEFP 469
              F  +   +L+   
Sbjct: 437 GS-FGGIHQKILDRLK 451


>gi|169633337|ref|YP_001707073.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii SDF]
 gi|226740983|sp|B0VMV2|LPXD_ACIBS RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|169152129|emb|CAP01028.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii]
          Length = 356

 Score = 40.2 bits (92), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   YRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGE 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             +  A    AG  +V   +   +         VD+   A   L      +  +T I  T
Sbjct: 48  KHLDQAKVSRAGAYIVTAALKEHLPEKD-NFIIVDNPYLAFAILTHVFDKKISSTGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|34540282|ref|NP_904761.1| folylpolyglutamate synthase [Porphyromonas gingivalis W83]
 gi|34396594|gb|AAQ65660.1| folylpolyglutamate synthase [Porphyromonas gingivalis W83]
          Length = 429

 Score = 40.2 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           + A    +  +   ++       +      D + V  SN      ++  LLEEF 
Sbjct: 380 QQAAAFGLVGNTYSSVREALEAARREAHADDFIFVGGSNF-----IVADLLEEFK 429


>gi|315926740|gb|EFV06116.1| Hypothetical protein CSQ_1735 [Campylobacter jejuni subsp. jejuni
          DFVF1099]
          Length = 72

 Score = 40.2 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 7  FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            +L + +    I       V G +I+   +    AFF     + D    I  AV+KGA 
Sbjct: 3  ISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFF-----NND-KKEIAQAVKKGAY 56

Query: 67 LVVVNTDMVASIGSL 81
           ++   D+      +
Sbjct: 57 AIITENDITIEDKEI 71


>gi|312875831|ref|ZP_07735821.1| FolC bifunctional protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797312|gb|EFR13651.1| FolC bifunctional protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 445

 Score = 40.2 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 92/299 (30%), Gaps = 24/299 (8%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VDF + E+GM   G +     +  P + +IT+I   H+       E  + +        
Sbjct: 135 KVDFAVVEVGMG--GRLDATNVIKSPELCIITSIGFDHMDFLGDSIEKIAFEKAGIIKPG 192

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
            T  + +    + +++++  S   G K I            + +        +     + 
Sbjct: 193 STVVVGIQKYKNVYDIIQNVSEEKGAKLIKVESDYNIISNTIDRVI------FDCYTSEC 246

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H  +N L  +     L    + +I+AL             R  +    
Sbjct: 247 IYKNLEIRLLGTHQVENALNCVYTFEYLQKRYNVSIEAL--VKGLMNTRWHGRFEIVSKQ 304

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             +I +S   N   M       ++     +   +        +G L    +  +  ++S 
Sbjct: 305 PLIILDS-AHNADGMDILRKSCNEYLREKDVWIV--------LGILKDKEYEKMLYIVSE 355

Query: 399 YNISHVWLSGFHVLALKDA-----LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              + ++    H      A     + +  ++ + E          S L     +++  S
Sbjct: 356 ITNNIIFTLVPHSKRAFSAEEAREIAKRFNLEFVEDYKNAIEKGLSKLNKNSALLISGS 414


>gi|87301576|ref|ZP_01084416.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
 gi|87283793|gb|EAQ75747.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 5701]
          Length = 487

 Score = 40.2 bits (92), Expect = 0.82,   Method: Composition-based stats.
 Identities = 67/407 (16%), Positives = 118/407 (28%), Gaps = 48/407 (11%)

Query: 66  GLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGK 119
            LVV++T + A    L       + +    DVL AL               IA+ GS GK
Sbjct: 76  ALVVISTAVPAENPELMAAREAGLTICHRSDVLAALIN---------AQPSIAVAGSHGK 126

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFL 178
           TTT  ++   L++  +    +        VP   +          + E   S        
Sbjct: 127 TTTSTLIATLLAATDQDPTAVIGGI----VPAFQSNARSGRGRVLVAEADES-----DGS 177

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               R  + +IT +   H  ++  +E +         G         N D          
Sbjct: 178 LVKFRSSLGLITNLELDHTDHYPDLEALIQTLQRFAAGCGSL---LANADCPVLRQHFQ- 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK-SMEVVHHGIGYHMAQNML 297
                    +S  +S+  +F     ++  E +  +    G+          G H   N  
Sbjct: 234 -----PGAWWSIERSEGVEFAALAVEEHGEGTMADFYENGELVGRFSLPLPGRHNLSNAT 288

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             L    +          A+        R         +          +   A++  A 
Sbjct: 289 AALAACRLEGVPFGALATAMRTLRSPGRRFDFRGRWAGRQVVDDYAHHPSEVEATLHMAR 348

Query: 358 -SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGF---- 409
             V S  SP  E  +  V          +  F    A  L+L +      ++ +G     
Sbjct: 349 LMVTSGRSPLPEVPQRLVAVFQPHRFSRTAEFMDAFAAALALADTVLLAPLYAAGEAPIP 408

Query: 410 --HVLALK---DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             +  AL      L   + +  S T++ L   +      GD+V+V  
Sbjct: 409 GVNSQALANRLQQLRPDLPLRVSATLEQLAEQVVRRSQPGDLVLVMG 455


>gi|163854031|ref|YP_001642074.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium extorquens PA1]
 gi|163665636|gb|ABY33003.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score = 39.8 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 68/401 (16%), Positives = 117/401 (29%), Gaps = 55/401 (13%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IPV G  D+     + A  A     A  +AITG+ GK+TT  +    L    +    
Sbjct: 91  QAGIPVIG--DIEIFCRERAALA---PDAPFVAITGTNGKSTTTALTAHLLRHAGRDVQM 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                 +IG  +     P      + EL    +     LT  ++P + ++  + P HL  
Sbjct: 146 G----GNIGTAILSLEPPAATRVHVVELSSFQID----LTPSLKPGVGILLNLTPDHLDR 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A  K  +  G +         DD +   +  +     I+           D+ 
Sbjct: 198 HGTMENYAVIKERLVAGADLAVIGV---DDPYCAAIAERRTGERIRLHIEGHGDAAGDYV 254

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                             G  +  V          N+      V+       T+ +  + 
Sbjct: 255 GANGTVRG--------PDGAVIAEVSGIQALLGDHNLQNAAAAVAAAIRLGLTSTEIAAG 306

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                G   R       G    +++S   N  S + A+     I          V G   
Sbjct: 307 LKSFPGLAHRMEPLRRIGPTLFVNDSKATNADSTEKALLAFRDI-------HWIVGGKAK 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM-DGLFLFIQ 438
           E G         LA +     ++H +L G    A    L   +      T+        +
Sbjct: 360 EGGI------EPLAPLFDR--VAHAYLIGASSEAFAATLEGRVAFTRCGTLEAATEAAAR 411

Query: 439 SSLVDGD---VVVV---KSS---------NSCGFYRLINLL 464
           ++   G    VV++    +S             F  L+  L
Sbjct: 412 AARASGTEAPVVLLSPACASYDQFPNFEVRGDRFRTLVAAL 452


>gi|50086604|ref|YP_048114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter sp. ADP1]
 gi|49532578|emb|CAG70292.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. ADP1]
          Length = 453

 Score = 39.8 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 127/420 (30%), Gaps = 39/420 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +    D  +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGDGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGCIITPVTETNIDD 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
           + A      +         K  D Q+   + CS+ S  +V +      EV  +  G H  
Sbjct: 229 VLAMGCWTPVVRTS----LKANDAQISAEQLCSDGSHFKVLEHGVVQGEVKWNMTGQHSV 284

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG---KRYRCALNQGFFTLIDESYNANP 350
            N L T+     +   ++ A +ALS F   + R       R       F     +     
Sbjct: 285 ANALATIAAAQHVGVTIEQACEALSNFGGVKRRMELLDTVRGVEVYDDFAHHPTAIETTL 344

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
              +  +      +          +G   E    S     ++        +         
Sbjct: 345 EGARKRLGERRLWAIIEPRSNTMRMGSHKEGLAHSARLADEVIWY-QPEGLDW------D 397

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
           +  + DA     H   S +++ +   I     DGD VV+  SN  GF  L   LL    A
Sbjct: 398 LQPVIDAATN--HAQVSRSLEDIIHRITQEAADGDAVVI-MSNG-GFGGLHQKLLTALQA 453


>gi|320530967|ref|ZP_08032000.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Selenomonas
           artemidis F0399]
 gi|320136832|gb|EFW28781.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Selenomonas
           artemidis F0399]
          Length = 467

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 96/336 (28%), Gaps = 41/336 (12%)

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
           +IGVPL    + +  +  I     S+  E     H+   HIA    + P H+     +E 
Sbjct: 156 NIGVPLIDEALRIPAEGAIAAEISSYQMEATQYFHV---HIAAELNVTPDHIVRHGSMEV 212

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
             + K ++F        + LN DD     + A++             ++ A         
Sbjct: 213 YQAMKEKLFAWQTPDDFLVLNDDDPHTRGMAARAKGRVCLFSRRHALAEGAYIDGGMIVI 272

Query: 266 CSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEG 325
             +    E+              G H  +N L       +     +     L  F   E 
Sbjct: 273 VWDGVRHELVP-----VAELGIRGGHNVENTLAAAASAFLAGVTPEEMRPVLRSFRGVEH 327

Query: 326 RGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELS 385
           R +  R           ++S   N  +   A+           G  + + G     G+  
Sbjct: 328 RIEPVREIGGVP---YYNDSKATNTDAAIKALEAFD-------GHIVLIAG-----GDDK 372

Query: 386 QSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI----HVHYSE-TMDGLFLFIQSS 440
            +   D   ++       + L G        A   +     H+H     M+       + 
Sbjct: 373 MTDLTDFMRLVQERT-DELILVGAAAERFAAAAVDAGIAPAHIHRVGYDMEAAVHLAHTL 431

Query: 441 LVDGDVVVV---KSS---------NSCGFYRLINLL 464
                 V++    +S             F R++N L
Sbjct: 432 ARSPQTVLLSPACASFDMYGGYEERGRDFKRIVNGL 467


>gi|318042994|ref|ZP_07974950.1| UDP-N-acetylmuramate--L-alanine ligase [Synechococcus sp. CB0101]
          Length = 480

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 60/422 (14%), Positives = 124/422 (29%), Gaps = 61/422 (14%)

Query: 59  HAVQKGAG---LVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKAT 109
            A++ G     LVVV++ + A+   L       + +    DVL A+  +A         +
Sbjct: 66  AAIRSGTSTQPLVVVSSAVPATNPELQEARRAGLEIAHRSDVLAAM--IAAQ-------S 116

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
            +A+ GS GKTTT  ++   L +   T     +    +                + E   
Sbjct: 117 SVAVAGSHGKTTTSTLIASLLHA---TDHDPTAVIGGVVPAFGSNGRNGKGALLVAEADE 173

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S            +  + VIT +   H  +++ +  + +       G E+          
Sbjct: 174 S-----DGTLVKFQAWLGVITNLELDHTDHYADLVALIATLQRFGRGCEQLLANR----- 223

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS-WMEVQLQGKSMEVVHHGI 288
               +L  +         +S    +  DF     +   + +     +             
Sbjct: 224 -DCPILSEQF---NASHWWSTTNPEGVDFAAIPVELSGDSTLAEFYEQGQCVGRFTLPLP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    +    +          A+        R               + + Y  
Sbjct: 280 GLHNLSNATAAMAACRLHGVSFAELRLAVESLQAPGRRFDYRGTWAE----RQVVDDYAH 335

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-----SH 403
           +P+ + A ++    +   G      V      +       +   AE L  + +       
Sbjct: 336 HPSEVGATLATAQLMVSSGRSPLPEV--PQRVLAVFQPHRYSRTAEFLEPFAVALGQADE 393

Query: 404 VWLS-----------GFHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           V L+           G    AL  A+ R    + V  +++++ L   +    + GD+V+ 
Sbjct: 394 VLLAPLYAAGEAPIAGISSHALAAAIQRLQPDLTVTVTDSLEELADAVAQRSLPGDLVLA 453

Query: 450 KS 451
             
Sbjct: 454 MG 455


>gi|305432138|ref|ZP_07401304.1| conserved hypothetical protein [Campylobacter coli JV20]
 gi|304444803|gb|EFM37450.1| conserved hypothetical protein [Campylobacter coli JV20]
          Length = 315

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + I  + +       V G ++    +    AFF     +      I+ AVQKG
Sbjct: 1   MNISNLSELIHANMLNEGSVLSVTGFALSLHELKNGFAFF----SNN--KKEIIQAVQKG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A  ++   ++   I    I    VD++  AL KL        +   IA+
Sbjct: 55  AFAIISEHELC--IDDKEIYYLQVDNLESALIKLLRFLCEEKECEFIAL 101


>gi|303258238|ref|ZP_07344245.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
 gi|302858991|gb|EFL82075.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Burkholderiales
           bacterium 1_1_47]
          Length = 477

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 21/290 (7%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           DF + EL    L     L        A +  I   H+     +E+ A+AK +IF      
Sbjct: 173 DFWVLELSSFQLETTESLHCDS----AALLNITEDHIDWHGSMEKYAAAKRKIF---SAD 225

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
               LN +D    L      +  + T  S    K  DF +                   +
Sbjct: 226 TVRVLNREDPGSMLSAEGVPSDLVHTFGSDAPKKIGDFGISDV----GALVWLSGCIASA 281

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              +   +     + +   +  ++     +   I   S+                    +
Sbjct: 282 SPELLIPMNALRIRGLHNAMNALAATALTLAVGIPLDSILRTLREYKGEPHRVQLILRAS 341

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            ID   ++   ++ A  + L+   P      + +LG   +  + +        +     +
Sbjct: 342 DIDYVDDSKGTNVGAVAAALAGFGPKK---VVLILGGDGKGQDFAP------LKAPIETH 392

Query: 401 ISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                  G     ++  +    +   +++TM       ++    GD +++
Sbjct: 393 AKGAVFIGRDAPLIEKEVDYPGLLKAHAKTMAEAVREARAMAKPGDTILL 442


>gi|300114588|ref|YP_003761163.1| FolC bifunctional protein [Nitrosococcus watsonii C-113]
 gi|299540525|gb|ADJ28842.1| FolC bifunctional protein [Nitrosococcus watsonii C-113]
          Length = 423

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 17/214 (7%)

Query: 259 QLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS 318
           +   ++   E           +        G    QN    L  + +++  +  +  A+ 
Sbjct: 219 RDFHYRITGEGWSWWSDGSHYADLPHPALTGACQHQNGATALMALKLMSERLPVSETAIR 278

Query: 319 VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDM 378
                     R++C   +        ++N + A         S      EG+  AVLG +
Sbjct: 279 GGLSAVRLPGRFQCFSGKVERIFDV-AHNPHGARWL----ARSLTDRPCEGQTYAVLGML 333

Query: 379 CE---MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +    G +     I     +    +      G    AL   +   ++     ++   + 
Sbjct: 334 ADKDVTGVVGALERIIQGWFVGGLAMDR----GLSGKALAGKMGYHLNPAIYPSVVEAYQ 389

Query: 436 FIQSSLVDGDVVVVKSS-----NSCGFYRLINLL 464
               +   GD V+V  S            L + +
Sbjct: 390 AALETAQTGDRVLVFGSFHTVEAVMRLEGLASSI 423


>gi|254828161|ref|ZP_05232848.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
 gi|258600547|gb|EEW13872.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N3-165]
          Length = 447

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 115/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTG---------NGTKDAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  + +          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +     L  F   + R             +         +             V++   P
Sbjct: 283 EDVKNELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|299136796|ref|ZP_07029979.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX8]
 gi|298601311|gb|EFI57466.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium sp. MP5ACTX8]
          Length = 340

 Score = 39.8 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 20/107 (18%)

Query: 5   WTFHDLLQAIQGHSIGIV-----PQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFI 57
               DL + +    +         +  + GI+ I      P    F A          + 
Sbjct: 1   MKLKDLAERLGAELVVGDGQEAPGEVEITGIAGI--EEAGPGHVTFVANP-------KYA 51

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
             A    A  V+V         S+ +P   + +   A  K       
Sbjct: 52  GLARSTRAAAVIVE----PEFASIGVPTLRIKNPYLAFAKAIEVFYK 94


>gi|326333492|ref|ZP_08199733.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325948692|gb|EGD40791.1| UDP-N-acetylmuramate--alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 472

 Score = 39.8 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 74/407 (18%), Positives = 135/407 (33%), Gaps = 34/407 (8%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           GHD        G   ++V+T +          V  V+  L    + A  A +     ++A
Sbjct: 66  GHD-ASQV--DGVDTLIVSTAIREDNPEY---VAAVEKGLRIYPRSAGLASVMEGRRVLA 119

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  +LT++L +                            D  + E   S  
Sbjct: 120 VAGTHGKTTTTSLLTVSLQAAGAAPTYTVGGELA---ASGTNAAEGSSDLFVAEADES-- 174

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                   + +P+ AV+T +   HL  +   E      A+    L   G +    DD   
Sbjct: 175 ---DGAFLVYKPYAAVVTNVEADHLDQWGTEEAYREGFAQFVGRLAPDGFLVAVIDDPGA 231

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYH 291
             L+  +H+LG +     G+S+ AD +          S   V         +     G H
Sbjct: 232 ADLRHVAHSLG-RRFIGVGESELADVRAVDIVLEGTTSSFTVVDGLDELGRITLQIPGRH 290

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
              + L  L +   L    D     L  F     R +R   A     +    +SY  +P+
Sbjct: 291 YVADALAALTVGLRLGHSFDLLKAGLESFTGTRRRMERKGEAAGVRVY----DSYAHHPS 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSG 408
            +   +     ++    G    ++     M   ++ F  ++  VL   +   +  V+L+ 
Sbjct: 347 EIAGDLVSGRSVA----GEGRLIVAFQPHMVSRTRIFGEEMGRVLGAADEVVVLDVYLAR 402

Query: 409 FH------VLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                      + DA+P     V     ++   + +      GD+V+
Sbjct: 403 EDYDPEVTGKLVADAVPLPPDRVVSVAGLEEAAVELARRARPGDLVL 449


>gi|13471548|ref|NP_103114.1| UDP-N-acetylmuramate--L-alanine ligase [Mesorhizobium loti
           MAFF303099]
 gi|23821883|sp|Q98KB4|MURC_RHILO RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|14022290|dbj|BAB48900.1| UDP-N-acetylmuramate-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 466

 Score = 39.8 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 129/418 (30%), Gaps = 46/418 (11%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           GH     A   G A +VVV+T +  +   L      +  ++     LA   R R     +
Sbjct: 58  GHK----AENLGDAEVVVVSTAIKKTNPELKAAREKLLPIVRRAEMLAELMRFRQA---V 110

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  M+   L +       I     +            D ++ + E   S 
Sbjct: 111 AIGGTHGKTTTTSMVATLLEAGGLDPTVINGGIIN---AYGTNARMGDGEWMVVEADES- 166

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   IAV+T I P HL ++   +++  A  +  E +   G   +  D   
Sbjct: 167 ----DGTFLKLPADIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYGFGVMCTDHPE 222

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV-------V 284
            + L  +        + ++G++  AD +    +     S  +V ++ +            
Sbjct: 223 VQALVGRIEDR---RVITYGENAQADVRFTNHRMAGATSEFDVVIRDRKTGSQSTISGLR 279

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + +   L    +   K LS F   + R               + +
Sbjct: 280 LPMPGRHNVSNATAAIAVAHELGLSGEAIKKGLSSFAGVKRRFTHTGSWNG----VDVFD 335

Query: 345 SYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  + A +           ++   PH   R   +  +       + +  +     
Sbjct: 336 DYGHHPVEISAVLKAARSATKGRVIAIAQPHRFTRLHDLFNEFSACFNDADTVIVAPVYA 395

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                I      G     L   +    H    Y E    +   I+     GD VV   
Sbjct: 396 AGEDPID-----GVSSDELVSRIRAGGHRDARYIEGPTAIAPIIRGLAKPGDFVVFLG 448


>gi|89093246|ref|ZP_01166196.1| folylpolyglutamate synthase [Oceanospirillum sp. MED92]
 gi|89082542|gb|EAR61764.1| folylpolyglutamate synthase [Oceanospirillum sp. MED92]
          Length = 419

 Score = 39.8 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 11/92 (11%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLF 434
           +G L+      + ++++   +  ++L+      G    AL   LP  +H   ++T+    
Sbjct: 328 LGMLADKDCQQVIDLITPV-VDSIYLTDLNVPRGQKASALAALLPSGVHALQADTVKSAI 386

Query: 435 LFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             I+      + V++  S    F+ + + L E
Sbjct: 387 EQIKKHTNAEENVIIAGS----FFTVSDALSE 414


>gi|291085087|ref|ZP_06351995.2| FolC protein [Citrobacter youngae ATCC 29220]
 gi|291071895|gb|EFE10004.1| FolC protein [Citrobacter youngae ATCC 29220]
          Length = 461

 Score = 39.8 bits (91), Expect = 0.87,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L          ++   +    +     
Sbjct: 375 KDIAGTLAWLKSVVDVWYCAPLEGPRGATAEQLLEHLGKGEAYGSVAQAWSAALAEAKPE 434

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 435 DTVLVCGS 442


>gi|331001074|ref|ZP_08324705.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
 gi|329569379|gb|EGG51157.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Parasutterella
           excrementihominis YIT 11859]
          Length = 477

 Score = 39.8 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 6/70 (8%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALP-RSIHVHYSETMDGLFLFIQS 439
           +G   +       +     +       G     ++  +    +   +++TM       ++
Sbjct: 373 LGGDGKGQDFAPLKAPIETHAKGAVFIGRDAPLIEKEVDYPGLLKAHAKTMAEAVREARA 432

Query: 440 SLVDGDVVVV 449
               GD +++
Sbjct: 433 MAKPGDTILL 442


>gi|260434852|ref|ZP_05788822.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
 gi|260412726|gb|EEX06022.1| UDP-N-acetylmuramate--alanine ligase [Synechococcus sp. WH 8109]
          Length = 469

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 128/417 (30%), Gaps = 50/417 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATI 110
           +  A   G+ +VV++T +  S   L       + ++   D+L AL +         +   
Sbjct: 68  VTEATAAGSPVVVISTAIPESNPELQRARQQGLEIWHRSDLLAALIE---------QQPS 118

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV-DFGIFELGM 169
           IA+ GS GKTTT  ++T  L    +    +        VP   +          + E   
Sbjct: 119 IAVAGSHGKTTTSTLITTLLLEADQDPTAVIGGI----VPSLGSNGHAGQGKLLVAEADE 174

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S             P + VIT +   H  ++S ++++ S       G ++      N+D 
Sbjct: 175 S-----DGSLVKFSPSLGVITNLELDHTDHYSNLDDLISTLQRFAGGCDRV---LANHDC 226

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGI 288
              +              +S   +++ DF         ++             +      
Sbjct: 227 PILQAHFQ------PTAWWSNQSAESVDFAALPLSLEGDRCVTRFYEAGHPVGDFTLPMA 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N    L    +     D  ++ L+       R         +          + 
Sbjct: 281 GLHNLSNATGALAACRMEGLPFDQLVEGLAGLKTPGRRFDLRGTWKGRHIVDDYAHHPSE 340

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
             A+++ A  ++             +L  + +    S++         +L N   + L+ 
Sbjct: 341 VQATLEMARLMVRSGRSPLPTAPQRLLA-VFQPHRYSRTRQFLDGFAKALQNCDLLLLAP 399

Query: 408 ----------GFHVLALKD---ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                     G    AL D    L   + +  ++ +D L   +     + D+V+   
Sbjct: 400 VYPAGEQPLQGISSNALADRVRKLKPDLKIVVADNLDQLTELVIQQSRENDLVLAMG 456


>gi|198437632|ref|XP_002124369.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
          Length = 2841

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 15/221 (6%), Positives = 43/221 (19%), Gaps = 4/221 (1%)

Query: 128  IALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIA 187
                 I        +   + G PL    +  D D        SH   +  + +    +  
Sbjct: 2393 QLWFPITPDKQFCFNLQWNSGCPLGSPLLDCDEDLCSQSHCASHPHAMCRVMNCGSCYPE 2452

Query: 188  VITTIAPAHLSNFSG----IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
                 +      +      ++     +A  +E      T          ++    S +  
Sbjct: 2453 FYDGSSGEVFQCYGRCCIDMQNNVHMEASTWENDCNVCTCQSGMISCNVKMCPHTSCSHP 2512

Query: 244  IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                 S            +  +  +Q           +               +  +  V
Sbjct: 2513 SAPTSSCCPVCQDCEYEGEVYRNGQQFEPNDCENCVCVSGSVTCRSVATNCPQVTCINPV 2572

Query: 304  SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                    +  ++      ++                +   
Sbjct: 2573 MKPGDCCLSCPRSCEGHRERDEWSMGRCHNCKCKRGLMQCN 2613


>gi|124005514|ref|ZP_01690354.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Microscilla marina ATCC 23134]
 gi|123988948|gb|EAY28541.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Microscilla marina ATCC 23134]
          Length = 374

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG-ISIDSRSIAPQEAFFA-IKGPHYDGHDFILHAVQ 62
           +T   +   + G  +       ++  I ID     P   F + +    Y   +FI     
Sbjct: 3   FTIKQIAIVVGGE-VQGNESLEIHDVIEID--KQPPGSGFISFLANEKY--ENFI---YT 54

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
             A  V+VN D       +   +  V D   A   L        K     +
Sbjct: 55  TSADAVIVNEDFSPK-KEIDTTLIKVKDPYSAFTALLEQYDKMVKLNKRGV 104


>gi|213163170|ref|ZP_03348880.1| murein peptide ligase [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 517

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 106/352 (30%), Gaps = 27/352 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  M           Y          G     AR+     F I     
Sbjct: 112 VLAVAGTHGKTTTAGM--ATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEADEY 169

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   ++  +   H   F  ++ I          L +         
Sbjct: 170 DCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQF----HHLVRIVPGQGRII 225

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
               ++   ++ ALG    +S  +        +  K  ++ S  EV L G+ +  V    
Sbjct: 226 WPENDINLKQTMALG---CWSEQELVGEQGHWQAKKLTTDTSEWEVWLDGEKVGDV--KW 280

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G     NM   L  ++          +A S         +R          T+ D+  + 
Sbjct: 281 GLVGEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHH 340

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLAEVLSLYNISHVW 405
             A     ++ L+ +     G    +   + E    +        DLA  L       V+
Sbjct: 341 PTA----ILATLAALRGKVGGTARII--AVLEPRSNTMKMGLCKDDLAPSLGRA--DEVF 392

Query: 406 LS-GFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
           L    H+      +  +     H+S  +D L   +  +   GD ++V  SN 
Sbjct: 393 LLQPPHIPWQVSEVADACVQPAHWSGDVDTLADMVVKTAQPGDHILV-MSNG 443


>gi|186475643|ref|YP_001857113.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
 gi|226703288|sp|B2JFN9|RLME_BURP8 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|184192102|gb|ACC70067.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia phymatum
           STM815]
          Length = 220

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E      +    L EV+   ++  V         L   A
Sbjct: 90  ALDLLPMEPIADVHFIQGDFRE-----DNVLAQLEEVVGDRDVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 VADAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFKTV 194


>gi|56476229|ref|YP_157818.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Aromatoleum
           aromaticum EbN1]
 gi|62900474|sp|Q5P6Z4|MURD_AZOSE RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|56312272|emb|CAI06917.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase (EC 6.3.2.9), gene:
           MURD OR NE0989 [Aromatoleum aromaticum EbN1]
          Length = 466

 Score = 39.8 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 406 LSGFHVLALKDALPRSIHV-HYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     ++ AL  S     ++  +D   +        GD V++
Sbjct: 389 LIGRDAPRIESALQGSAVALEHAPDLDAAVVRASEQAQPGDAVLL 433


>gi|260583459|ref|ZP_05851207.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
 gi|260158085|gb|EEW93153.1| UDP-N-acetylmuramate--alanine ligase [Granulicatella elegans ATCC
           700633]
          Length = 443

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 59/374 (15%), Positives = 117/374 (31%), Gaps = 59/374 (15%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +L            +AITGS GKT+T  +L   LS+++ T   IG    H      
Sbjct: 95  KFLGELLKGY------KSVAITGSHGKTSTTGLLAHVLSAMEPTSYLIGDGTGHG----- 143

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                   ++ + E        + +     +P  A++T I   H   ++ I+++ SA   
Sbjct: 144 ----VEGSEYFVLEACEYKRHFMAY-----KPDYAIMTNIDFDHPDYYTDIDDVQSAFES 194

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
               ++K      +                    I  +G +K+ D      ++ +E S  
Sbjct: 195 FGRQVKKGIIACGDD--------ARLHELDVTTPITYYGIAKSNDVVAENIEKDTEGSHF 246

Query: 273 E-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           +         +      G H   N L  +    +   + +     L  F   + R    +
Sbjct: 247 DVYIYGKFYGKFDIPTFGTHNILNALAIITFYYLNNFNPEELASNLKTFGGVKRRFSEKK 306

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     + + Y  +P+ ++A +    Q  P  +     V          + +   +
Sbjct: 307 IKE-----ITVIDDYAHHPSEIRATLDAARQKYPTKK----IVAVFQPHTFTRTIALLDE 357

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            A+ LSL     V+L             +S +V            + + +  G  V+   
Sbjct: 358 FAKALSLA--DDVYLC----DIFASVREKSGNVS--------IEDLAALVEGGATVL--- 400

Query: 452 SNSCGFYRLINLLL 465
                   +  LL+
Sbjct: 401 ----KLENVSPLLV 410


>gi|78065909|ref|YP_368678.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. 383]
 gi|123568833|sp|Q39HN2|RLME_BURS3 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|77966654|gb|ABB08034.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia sp. 383]
          Length = 220

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E     +  H  L EVL   ++  V      +      +
Sbjct: 90  ALDILPMEPIADVHFLQGDFRE----DEVLH-QLEEVLEGRDVDLVI---SDMAPNLSGV 141

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 142 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKTV 194


>gi|32267364|ref|NP_861396.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Helicobacter hepaticus ATCC 51449]
 gi|46576947|sp|Q7VF14|MURE_HELHP RecName: Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase; AltName: Full=Meso-A2pm-adding
           enzyme; AltName: Full=Meso-diaminopimelate-adding
           enzyme; AltName:
           Full=UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase;
           AltName: Full=UDP-MurNAc-tripeptide synthetase; AltName:
           Full=UDP-N-acetylmuramyl-tripeptide synthetase
 gi|32263417|gb|AAP78462.1| UDP-N-acetylmuramyl tripeptide synthase [Helicobacter hepaticus
           ATCC 51449]
          Length = 463

 Score = 39.8 bits (91), Expect = 0.90,   Method: Composition-based stats.
 Identities = 49/383 (12%), Positives = 102/383 (26%), Gaps = 47/383 (12%)

Query: 95  LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT--------YACIGSYNNH 146
           LN + +A    +   I+ ITG+ GKTTT  ++   L  +           +         
Sbjct: 74  LNDILMANFSHNSPNIVGITGTNGKTTTAAIIYSILLDLGFNVALLGTRGFFINEHRIKP 133

Query: 147 IGVPLTLARMPVDVDFGIFE-------LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
            G+         +      E       + +S     +     +   + ++T I   HL  
Sbjct: 134 KGLTTPSMLELYENLCIAMEQKCNFFIMEVSSHAIEQERIAGLDFALKILTNITSDHLDY 193

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +EE    K   FEG        LN D+ +       ++  GI+   +      A   
Sbjct: 194 HKSVEEYRRIKNSFFEGEG---RKLLNADEPYIYCTDKAAYFYGIEKKGNLSVDVYALEN 250

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                    +   +   Q      ++     +     +  + I  +    ++   +AL  
Sbjct: 251 GIDGYISWRERDYKTNEQSAIQAHLYGKHNLYNTLAAIGAVKI--LTQEPLERIAEALEH 308

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
           F    G     R  +      +I + +      M                    V G   
Sbjct: 309 FGGVSG-----RMEVVHNMPLVIVD-FAHTYDGMYQIFESFRHCK------IAVVFGA-- 354

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSETM 430
             G              +      ++++  +            +   +    +V      
Sbjct: 355 --GGDRDKSKRPKMGACAQQFAHKIYITSDNPRTESPKSIIEDILSGMQDGEYVFVEADR 412

Query: 431 DGLFLFIQSSLVDGDVVVV--KS 451
                    SL   +V+++  K 
Sbjct: 413 KKAIYMALESLESDEVLLILGKG 435


>gi|169797792|ref|YP_001715585.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213155410|ref|YP_002317455.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|215485142|ref|YP_002327383.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
 gi|301345508|ref|ZP_07226249.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB056]
 gi|301512897|ref|ZP_07238134.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB058]
 gi|169150719|emb|CAM88629.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AYE]
 gi|213054570|gb|ACJ39472.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB0057]
 gi|213988815|gb|ACJ59114.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB307-0294]
          Length = 457

 Score = 39.8 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGMINGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAATN--HAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|254252702|ref|ZP_04946020.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
 gi|124895311|gb|EAY69191.1| 23S rRNA methylase [Burkholderia dolosa AUO158]
          Length = 220

 Score = 39.8 bits (91), Expect = 0.91,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-SGFHVLALKDA 417
            L  +          + GD  E        H  L +VL    +  V      ++  +  A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----DDVLH-QLEDVLEGRPVDLVISDMAPNLSGVASA 144

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              +  + +   +     F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 145 --DAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|121608457|ref|YP_996264.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
 gi|121553097|gb|ABM57246.1| UDP-N-acetylmuramate [Verminephrobacter eiseniae EF01-2]
          Length = 491

 Score = 39.8 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 55/383 (14%), Positives = 110/383 (28%), Gaps = 29/383 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGV---------PLTLARMPVD 159
           ++A+ G+ GKT T  ML   L    +     IG    + G+         PL        
Sbjct: 113 VLAVAGTHGKTGTSSMLAWILECAGQQPGFLIGGVPLNFGLSARLGAPQRPLPAPAPLGA 172

Query: 160 VDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
               + E                  RP  AV+  +   H   F+ +  I      +   +
Sbjct: 173 TPLFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLAAIERQFHHLVRTM 232

Query: 218 EKTGTIFLNYDDSFFELLKAKSHAL-----GIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
             +G + +N  D+    +            G+ T+ +FG    + F          +   
Sbjct: 233 PASGRVVVNGLDASLARVLQMGCWSQVTRFGVDTMSAFGAEGTSAFGAETISAFGAEGPP 292

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
           +        + +          +  +           V       +         KR   
Sbjct: 293 QSFDVTHQGQKLARVEWALTGVHNQLNALAAIAAAQHVGVDPGQAAAALATFRNVKRRME 352

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                    + + +  +P++++  +  L      G G RI  + +         +    L
Sbjct: 353 LRGIVGGVAVYDDFAHHPSALRTTLDGLR--RSLGAGARILAVFEPRSNTMKLGTMKSRL 410

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALP----RSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
              L   +++    +G    A +   P      +    +     L   +  +   GD V 
Sbjct: 411 PWALEPADLAFCLTAGLDWDAAQALAPLGVGPGLRAQTAPDSATLLAQVTQAARPGDHV- 469

Query: 449 VKSSNSCGFY----RLINLLLEE 467
           V  SN  GF     +L+  L ++
Sbjct: 470 VCMSNG-GFDAMPAKLLQALQKQ 491


>gi|313891722|ref|ZP_07825327.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Dialister microaerophilus UPII 345-E]
 gi|313119716|gb|EFR42903.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Dialister microaerophilus UPII 345-E]
          Length = 344

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++ + + G   G  P   +N + S +S    P+ A FA KG +    ++I    + G
Sbjct: 4   TIGEIAKLLGGTLYGN-PDIIINDVKSAES--AGPEHATFA-KGVYV---EYINQ-FKAG 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTT 121
             +++V++     I +    +  V D  GA  KL       ++ A  I  T  +GK  
Sbjct: 56  --VILVDSP----IENCDKNLIVVRDCRGAFGKLIEIFHPEKTFAPQIHPTAVIGKNV 107


>gi|312622287|ref|YP_004023900.1| folc bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202754|gb|ADQ46081.1| FolC bifunctional protein [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 437

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 89/296 (30%), Gaps = 18/296 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +VDF + E+G+   G       +  P I VIT+I   H+       E  + +        
Sbjct: 140 NVDFVVLEVGLG--GRFDATNVVENPEICVITSIGFDHMDILGSTIEKIAFEKAGIIKQN 197

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + L   +   E++         +        +                +  V  +G
Sbjct: 198 TKVILALQRYEKVKEVISKVCKEQNAQ------LIEVERNYHVLKNTLEGIVFDCVTPKG 251

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H  +N L  + +      +         +      R       L    
Sbjct: 252 IYKNLEIKLLGTHQVENALNCVYV-YECLKEKYDIKTEALIKGLLNARWNGRFEVLIDTP 310

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++N +   +     V +      + + +AV+G    + +      I L + ++ 
Sbjct: 311 LVVLDGAHNVDGMKVL----VENCKIYLNDKKIVAVVGI---LKDKEYEKMISLIKSVAQ 363

Query: 399 YNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             I  +  S     + K+AL       V +         +      + D V++  S
Sbjct: 364 RVIFTLVPSQKRAFSEKEALEISHKCGVEFVPDFREAIKYALGLCNEDDAVIICGS 419


>gi|284172781|ref|YP_003406163.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
 gi|284017541|gb|ADB63490.1| dihydropteroate synthase [Haloterrigena turkmenica DSM 5511]
          Length = 810

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------FHVLALKDALP-RSIHV 424
             V G M E        H  +A   +L +   ++L         +  AL  A   R   +
Sbjct: 327 HLVFGAMRE------KDHRGMA--AALPSPDALYLCEPDVPRAENTDALAAAFDDRPATI 378

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             + ++        S+  +GD V+V  S
Sbjct: 379 DCAGSVLEATERALSAADEGDCVLVTGS 406


>gi|269798311|ref|YP_003312211.1| FolC bifunctional protein [Veillonella parvula DSM 2008]
 gi|269094940|gb|ACZ24931.1| FolC bifunctional protein [Veillonella parvula DSM 2008]
          Length = 435

 Score = 39.8 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 22/301 (7%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEG 216
             VD+ + E+    LG +   T++V P ++VIT +   H +     +EEIA  KA I + 
Sbjct: 134 QGVDYAVVEV---GLGGLLDSTNIVTPKVSVITNVTIDHQAYCGDTVEEIARHKAGIIKP 190

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
                T   +   +  E +  K HA        FG    +            Q       
Sbjct: 191 KVPVVTAAQDTPLNIIEDVAKKQHAKLYVFNKDFGIDSRS-------AVTGGQMITVSTN 243

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                 +     G H + N+   L  V +L  +     +                     
Sbjct: 244 DAAPAMLFTTMAGIHQSVNLACALMAVRLLMKEDTNISEETMREGFARTTWAGRFEVKRG 303

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE-- 394
              T I +  +    +   A++         +   +A+L D     +  ++   ++ +  
Sbjct: 304 LDRTFIFDGAHNAAGAESFAMTYDELFKDSPKTIVMAILKD-----KDQEAIIREVVKVG 358

Query: 395 ---VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
              ++         +    V  ++  +P++     +++++            GD++ V  
Sbjct: 359 DTVLVVPAPTDRTEVPETLVEMIRRTVPKAT-AQTADSIEAALALAYKHTKTGDIIAVCG 417

Query: 452 S 452
           S
Sbjct: 418 S 418


>gi|328675368|gb|AEB28043.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella cf. novicida 3523]
          Length = 347

 Score = 39.8 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 41/112 (36%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK- 63
          +T   ++Q +    I       +  IS                     G ++   A +  
Sbjct: 3  YTLKQIVQHLDAKVINQPNDEVI--IS---------------------GLNYAEQAKEND 39

Query: 64 ----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                           A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 40 LTLIDKQEHIKLWQNSKAAAAIVSKKISDQLAQINDKPLIVVNNADLAMAKI 91


>gi|329119065|ref|ZP_08247757.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464804|gb|EGF11097.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Neisseria bacilliformis ATCC BAA-1200]
          Length = 346

 Score = 39.8 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 15/104 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M+  +T   +   + G   G      V+ +  +D       +  F A          +  
Sbjct: 1   MSKTYTLSQITARLGGQVRG--ADTAVSAVQPLD--KAEAADISFLANP-------KYKH 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                GAG V+V+    A     S+      D      K+A   
Sbjct: 50  EVHASGAGAVIVSEKAAAEFEGRSL--IVAADPYLYFAKVARLF 91


>gi|15645046|ref|NP_207216.1| hypothetical protein HP0418 [Helicobacter pylori 26695]
 gi|2313527|gb|AAD07489.1| predicted coding region HP0418 [Helicobacter pylori 26695]
          Length = 335

 Score = 39.8 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFVA-----KD-HTLIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PVSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|169795689|ref|YP_001713482.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AYE]
 gi|215483175|ref|YP_002325382.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|260554751|ref|ZP_05826972.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii ATCC 19606]
 gi|301512098|ref|ZP_07237335.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AB058]
 gi|226740703|sp|B0V6F7|LPXD_ACIBY RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|226740980|sp|B7H1U9|LPXD_ACIB3 RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|226740984|sp|A3M650|LPXD_ACIBT RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|169148616|emb|CAM86482.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AYE]
 gi|193077560|gb|ABO12394.2| hypothetical protein A1S_1967 [Acinetobacter baumannii ATCC 17978]
 gi|213986499|gb|ACJ56798.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AB307-0294]
 gi|260411293|gb|EEX04590.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii ATCC 19606]
          Length = 356

 Score = 39.8 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   YRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGE 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             +  A    AG  +V   +   +         VD+   A   L      +  +T I  T
Sbjct: 48  KHLDQAKVSRAGAYIVTAALKEHLPEKD-NFIIVDNPYLAFAILTHVFDKKISSTGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|212213338|ref|YP_002304274.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuG_Q212]
 gi|226706320|sp|B6J2Q2|MURC_COXB2 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|212011748|gb|ACJ19129.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 465

 Score = 39.8 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 122/371 (32%), Gaps = 30/371 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ML+ A           +G   N+   P  +          I E   
Sbjct: 111 IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNNSQTPARVGNGHY----FIAEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S           + P IAV+T I   HLS +      +     +  E   + G + L  D
Sbjct: 167 S-----DASFLFMHPDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLD 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +        I   +S           ++  Q      +    +   + V     
Sbjct: 222 DPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSL--FQIHSPQRKAPLTVKLSMP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N      I  ++  +    +K+L+ F   + R       +      LI E Y  
Sbjct: 280 GQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  +KA ++      P        VL         ++    +   VL+  +   +  V+
Sbjct: 340 HPNEIKATLAAARAAWPER----RMVLVFQPHRYSRTRDLMTEFVSVLAETDWLVLLEVY 395

Query: 406 LSGFHVLALKDALPR--------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +   D +          +    +   +  L   +Q      D+++++ + + G 
Sbjct: 396 SAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG- 454

Query: 458 YRLINLLLEEF 468
             ++  L++ +
Sbjct: 455 -SIVTALVQTY 464


>gi|158334692|ref|YP_001515864.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Acaryochloris
           marina MBIC11017]
 gi|189082870|sp|B0C915|MURD_ACAM1 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|158304933|gb|ABW26550.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase, putative
           [Acaryochloris marina MBIC11017]
          Length = 461

 Score = 39.8 bits (91), Expect = 0.96,   Method: Composition-based stats.
 Identities = 61/389 (15%), Positives = 118/389 (30%), Gaps = 42/389 (10%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               +L +A R   +   + ITG+ GKTTT  ++     +             +IG    
Sbjct: 96  ETFGELELAWRSLKQYPWVGITGTNGKTTTTAIVEAIFKAAGLRAP----ACGNIGYSAC 151

Query: 153 LARMPVDV-DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +  D  D+ I E+    +      +  + P I V TT +P HL     +E     KA
Sbjct: 152 ELALAGDPLDWVIAEVSSYQI----ESSPTLAPTIGVWTTFSPDHLERHGTVECYREIKA 207

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
            +    ++      +         +            S         +        E+ W
Sbjct: 208 LLLNQSKQKILNGDDQGLIKGLPWRWADAYWTSSHGPSL-PDACNGQRCPVPNIFIEEGW 266

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
           ++V+ +          +G H  QN+L+ + +  +     D    A+S F        R  
Sbjct: 267 VKVEGEPIVQVSSMRMLGVHNQQNLLLAVAVAHLAGIGKDAIATAVSTFPGV---AHRLE 323

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     I++S   N  + +  ++ ++  +       I + G   ++G+        
Sbjct: 324 HICTWQGVDFINDSKATNYEAAQTGLAAVNSPA-------ILIAGGEAKVGDDQAWL-QT 375

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSS---LVDGDV 446
           +    +      V L G    A    L    +      +TM+            L    V
Sbjct: 376 IQAQAA-----KVLLIGSAAGAFSQRLKAIGYDDYEIVDTMNKAVTRAAELAPSLQAKSV 430

Query: 447 VV--VKSS---------NSCGFYRLINLL 464
           ++    +S             F +L   L
Sbjct: 431 LLSPACASFDQYQNFERRGDHFRQLCQDL 459


>gi|328542964|ref|YP_004303073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412710|gb|ADZ69773.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 466

 Score = 39.8 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 114/378 (30%), Gaps = 40/378 (10%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVG 118
             +V    VA       P + V+    A    +  + +  R R      A +IAITG+ G
Sbjct: 67  AALVLAPGVALTHPK--PHWSVELARTAGVEVIGDIELFCRERRRICPDAPLIAITGTNG 124

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           K+TT  ++   L ++            +IG P+            + E     +     L
Sbjct: 125 KSTTTALIAHLLKTLGLDVQMG----GNIGTPVLDLAPLQPGRHYVVECSSYQID----L 176

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
              + P + ++  ++P HL     +E  A+ K  +  G           DD F E +  +
Sbjct: 177 APSIEPTVGILMNLSPDHLDRHGTMENYAAIKERLVAGSRTAVVGV---DDRFSEAIADR 233

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
               G++     G    AD    +  +  E       L                  N   
Sbjct: 234 IARAGVRVRRISGHLPQADGVFAEGSRLVEADSGAQTLGADLA----GIGALRGRHNAQN 289

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                + L A   +A +         G   R +     G    I++S   N  +   A++
Sbjct: 290 AAAAFAALRALGLSAARIAGALVSFPGLAHRMQIVARSGRILFINDSKATNADAAAWALA 349

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              +I     G+  +  G +  + +                 I+  +L G    A    L
Sbjct: 350 SYDRIYWIAGGKPKS--GGIEPLADYFPR-------------IARAYLIGEAAEAFAKTL 394

Query: 419 PRSIHVHYSETMDGLFLF 436
              +      T+D     
Sbjct: 395 DGRVAHEICGTLDVAVSR 412


>gi|221201968|ref|ZP_03575004.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
 gi|221204902|ref|ZP_03577919.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221213879|ref|ZP_03586852.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221166056|gb|EED98529.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD1]
 gi|221175759|gb|EEE08189.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2]
 gi|221178051|gb|EEE10462.1| ribosomal RNA large subunit methyltransferase J [Burkholderia
           multivorans CGD2M]
          Length = 220

 Score = 39.8 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-SGFHVLALKDA 417
            L  +          + GD  E     +  H  L  VL    +  V      ++  +  A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----DEVLHR-LEAVLEGRTVDLVISDMAPNLSGVASA 144

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              +  + +   +     F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 145 --DAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|149184749|ref|ZP_01863067.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
 gi|148832069|gb|EDL50502.1| hypothetical protein ED21_28563 [Erythrobacter sp. SD-21]
          Length = 475

 Score = 39.8 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 376 GDMCEMGEL-SQSFHIDLAEVLSLYNISHVWLSG-----FHVLALKDALPR-SIHVHYSE 428
           G + +MG+  +Q F  +LAE   +     V+  G          +   + +      Y  
Sbjct: 375 GPLRQMGDELAQVFVDELAEDDRVLMCDPVYFGGTVDRSEGSERIVRLVEQAGGRAEYIP 434

Query: 429 TMDGLFLFIQSSLVDGDVVVVKSSN 453
           T   +   + +    GD +VV  + 
Sbjct: 435 TRKAIEDRLVNLASPGDRIVVMGAR 459


>gi|256422087|ref|YP_003122740.1| FolC bifunctional protein [Chitinophaga pinensis DSM 2588]
 gi|256036995|gb|ACU60539.1| FolC bifunctional protein [Chitinophaga pinensis DSM 2588]
          Length = 428

 Score = 39.8 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 410 HVLALKDALPRSI-HVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               L +   +     H  ET+   F   +      D+V+V  S
Sbjct: 377 DQQELAELAQQHGLRGHAYETVQQAFQTAKQQAHKDDIVLVCGS 420


>gi|184158410|ref|YP_001846749.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii ACICU]
 gi|332873901|ref|ZP_08441841.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6014059]
 gi|226740982|sp|B2I321|LPXD_ACIBC RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|183210004|gb|ACC57402.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii ACICU]
 gi|322508734|gb|ADX04188.1| lpxD [Acinetobacter baumannii 1656-2]
 gi|323518339|gb|ADX92720.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332737887|gb|EGJ68774.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6014059]
          Length = 356

 Score = 39.8 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   YRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGE 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             +  A    AG  +V   +   +         VD+   A   L      +  +T I  T
Sbjct: 48  KHLDQAKVSRAGAYIVTAALKEHLPEKD-NFIIVDNPYLAFAILTHVFDKKISSTGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|170763998|ref|ZP_02636857.2| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170710779|gb|EDT22961.1| Mur ligase family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 560

 Score = 39.8 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 118/374 (31%), Gaps = 44/374 (11%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSS-------IKKTYACIGSYNNHIGVPLTLARM---- 156
             I++ITG+ GKT+T  ++     +              I +     G            
Sbjct: 163 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 222

Query: 157 -PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEI 213
               V+ G+ E      G +R         +A+IT++A  H+       I ++   K   
Sbjct: 223 TNPQVEIGVLETA--RGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLIT 280

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCS 267
              +   G + +  +   +E+L+ K +                   K A F   K     
Sbjct: 281 TREVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNEYIEKHMKNGKEAWFVEDKNVIFF 340

Query: 268 EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRG 327
           +     +    K  +  H G       N+L+++  +  +  ++   + +L          
Sbjct: 341 DGKDKNIISNIKDFKFTHDGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNN 400

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              +  +    F +I + Y  NP + +    + ++I  +       ++  +   G+    
Sbjct: 401 IGRQNIIELENFKIILD-YGHNPEAFEELFYLANKIKRNK------IISIVSSPGDRLDE 453

Query: 388 FHIDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGL 433
           +  +L  +    +   + +       G   L + + +   I+      V        +  
Sbjct: 454 YIKELGRIAGENS-DTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEA 512

Query: 434 FLFIQSSLVDGDVV 447
                S   +GD++
Sbjct: 513 IKKAISMAKEGDII 526


>gi|33592218|ref|NP_879862.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|81578758|sp|Q7VZ56|RLME_BORPE RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33571863|emb|CAE41377.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis Tohama I]
 gi|332381635|gb|AEE66482.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           pertussis CS]
          Length = 210

 Score = 39.8 bits (91), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 374 VLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMD 431
           V G     G+  +      LA ++    +  V         L    +  S  + +    +
Sbjct: 92  VAGVEFIQGDFREEEVLEQLARMVDGQPVDLVIS--DMAPNLSGVGVADSARIQHV--CE 147

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               F  + L     ++VK+ +  GF +++    + F 
Sbjct: 148 LALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFK 185


>gi|301328816|ref|ZP_07221861.1| protein FolC [Escherichia coli MS 78-1]
 gi|300844816|gb|EFK72576.1| protein FolC [Escherichia coli MS 78-1]
          Length = 281

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 195 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 254

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 255 DTVLVCGS 262


>gi|222529479|ref|YP_002573361.1| FolC bifunctional protein [Caldicellulosiruptor bescii DSM 6725]
 gi|222456326|gb|ACM60588.1| FolC bifunctional protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 432

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 89/296 (30%), Gaps = 18/296 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +VDF + E+G+   G       +  P I VIT+I   H+       E  + +        
Sbjct: 135 NVDFVVLEVGLG--GRFDATNVVENPEICVITSIGFDHMDILGSTIEKIAFEKAGIIKQN 192

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               + L   +   E++         +        +                +  V  +G
Sbjct: 193 TKVILALQRYEEVKEVISKVCKEQNAQ------LIEVERNYHVLKSTLEGIVFDCVTPKG 246

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +G H  +N L  + +      +         +      R       L    
Sbjct: 247 IYKNLEIKLLGTHQVENALNCVYV-YECLKEKYDIKTEALIKGLLNARWNGRFEVLIDTP 305

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++N +   +     V +      + + +AV+G    + +      I L + ++ 
Sbjct: 306 LVVLDGAHNVDGMKVL----VENCKIYLNDKKIVAVVGI---LKDKEYEKMISLIKSVAQ 358

Query: 399 YNISHVWLSGFHVLALKDAL--PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             I  +  S     + K+AL       V +         +      + D V++  S
Sbjct: 359 RVIFTLVPSQKRAFSEKEALEISHKCGVEFVPDFREAIKYALGLCNEDDAVIICGS 414


>gi|241205559|ref|YP_002976655.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240859449|gb|ACS57116.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 470

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 107/356 (30%), Gaps = 38/356 (10%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L S   
Sbjct: 82  PHWTVDLARAAGVDIVGDVELFVRERRAHAPDCPFIAITGTNGKSTTTALIAHILKSAGY 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG  +     P    + + E     +     L   + P   ++  + P 
Sbjct: 142 D----TQLGGNIGTAVLTLDPPKAERYYVVECSSYQID----LAPTLDPSAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G +      +   D     L A         +    +   
Sbjct: 194 HLDRHGTMQHYADVKERLVAGSDV----AIVGIDDSHSALIADRVERAGVKVVRISRRNV 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               +        ++     L    ++ +    G H AQN    +     +    D    
Sbjct: 250 VADGIYAEGTRLIKAAGGAMLPFVDLDGIQTLRGSHNAQNAAAAVAACLAVGVSADDIRA 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
             + F   + R    +    +G    +++S   N  +   A+S   +I     G   A  
Sbjct: 310 GFASFPGLKHRM---QPVGQRGRVVFVNDSKATNADAAAPALSSYDRIYWIAGGLPKA-- 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           G +  +                   I+  +L G         L  ++    S+T++
Sbjct: 365 GGITTLAPYFPR-------------IAKAYLIGEAAAEFAATLGEAVPYEISDTLE 407


>gi|332873288|ref|ZP_08441243.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
 gi|332738494|gb|EGJ69366.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii 6014059]
          Length = 445

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 55  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 99

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 100 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 156

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 157 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 216

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 217 VLEMGCWTPVIR--TSLEANEKATLSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 274

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 275 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTINGIEVYDDFAHHPTAIDTTLD 334

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 335 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 387

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 388 QPVIEAATN--HAQVSRSLDEIIDRIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 442


>gi|92113390|ref|YP_573318.1| FolC bifunctional protein [Chromohalobacter salexigens DSM 3043]
 gi|91796480|gb|ABE58619.1| FolC bifunctional protein [Chromohalobacter salexigens DSM 3043]
          Length = 437

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDAL-----PRSIHVHYSETMDG 432
           +G L+      +   L+   I         G                 +  +H   + + 
Sbjct: 336 LGMLADKDADGVIAALAPQ-IDAWVTVSLSGDRARDAAQLATFVEGRGAKVLHQGASPED 394

Query: 433 LFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
              ++ +++ +GD ++V  S    F+ +   L
Sbjct: 395 GVRWLHANMDNGDDILVCGS----FWTVAEAL 422


>gi|15616833|ref|NP_240045.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681586|ref|YP_002467972.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471272|ref|ZP_05635271.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11133466|sp|P57310|MURC_BUCAI RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|254765987|sp|B8D913|MURC_BUCA5 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|25293621|pir||C84955 UDP-N-acetylmuramate-alanine ligase (EC 6.3.2.8) [imported] -
           Buchnera sp. (strain APS)
 gi|10038896|dbj|BAB12931.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219624429|gb|ACL30584.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 39.8 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 57/413 (13%), Positives = 128/413 (30%), Gaps = 44/413 (10%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI   ++     +  N   + +    +IP+         + ++ ++         IA++
Sbjct: 79  DFI---IKS--SAISSNNKEILAAKKRNIPILL----RAEMIEILMSF-----KKGIAVS 124

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+                 N  +   +          + I E   S    
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLD---PTVINGGLIKSINSYAKLGSSSYFITEADES---- 177

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFE-----GLEKTGTIFLNYDD 229
                  + P+I ++T I P H+ ++    +       IF             I  N   
Sbjct: 178 -DASFLYLNPNIIIVTNIEPDHIDHYDNSFKKLKQTFLIFLKKITLYGTAIVCIDNNAIC 236

Query: 230 SFFELLKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                LK K    G         + + ++          K   + + +       +    
Sbjct: 237 DILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNIPGKHNALNA 296

Query: 285 HHGIGYHMAQNMLMTLGIVSILT----ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
              I   + + +   L I S+            +  LS+    + R             T
Sbjct: 297 AAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGHHPT 356

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + E+      S     +++    PH   R   +  D  +         +D+  +L +Y+
Sbjct: 357 ELSETIKTIRISWP-NKNLIMIFQPHRYTRTYNLYHDFVQTLSQ-----VDVLLILHVYS 410

Query: 401 ISHVWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
            +  ++ G   L+L + + +    +V      + +   +  +L   D+++++ 
Sbjct: 411 ANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQG 463


>gi|148244841|ref|YP_001219535.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166224747|sp|A5CW53|MURC_VESOH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|146326668|dbj|BAF61811.1| UDP-N-acetylmuramate--alanine ligase [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 469

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 141/407 (34%), Gaps = 47/407 (11%)

Query: 63  KGAGLVVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           K A  VV+++ +  +   +      +IP+         +  LA   R R     IAI G+
Sbjct: 70  KNAQAVVISSAIKDNNPEVIKAHQLNIPIV----PRAEM--LAELMRFRFG---IAIAGT 120

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++T  L+  +     I     +      +     + D+ I E   S    + 
Sbjct: 121 HGKTTTTSIITHILNMAELDPTYIIGGILNS---SGINAKLGESDYLIAEADESDASFLH 177

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA-KAEIFEGLEKTGTIFLNYDDSFFELL 235
                ++  ++VIT I   H++ ++   +            L   GT  +  DD     +
Sbjct: 178 -----LQSMLSVITNIDHEHMATYNNDYQKLKDAFVSFSANLPFYGTCIICIDDKGVNEI 232

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK--SMEVVHHGIGYHMA 293
            +  H      I ++G +  AD Q    KQ   Q   ++          +  + IG H  
Sbjct: 233 LSDIHRP----IITYGFNNGADIQAINIKQVDMQMHFDIIYDKYTKPFPIKLNLIGKHNI 288

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N L  +GI   L   V+   KAL+ F     R   +           + + Y  +P  +
Sbjct: 289 LNTLAAIGICCELNIKVNIIQKALANFSGVARRLDYHGKLNINNLQISLFDDYGHHPKEI 348

Query: 354 ----------KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
                          ++    PH   R   +  +   +   + +  +          I+H
Sbjct: 349 SAVFESLKDTYQNKRLVVIFQPHRYSRTHDLFDNFTRILSTADALILLDIYPAQEKPIAH 408

Query: 404 VWLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +     +   L DA+ +  S++    +    +   + + + + DV++
Sbjct: 409 I-----NSSTLADAIRKYSSLNPVVIKNQKKILDILPNIVHNNDVLL 450


>gi|86749115|ref|YP_485611.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Rhodopseudomonas palustris HaA2]
 gi|118595683|sp|Q2IYL0|MURD_RHOP2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|86572143|gb|ABD06700.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhodopseudomonas
           palustris HaA2]
          Length = 466

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 104/375 (27%), Gaps = 43/375 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             A  +AITG+ GK+TT  ++   +               +IG  +     P      + 
Sbjct: 112 PNAPFVAITGTNGKSTTTALIAHLMRQAGYDTQMG----GNIGTAILSLEPPRAGRVHVI 167

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E+    +     LT  + P + ++  +   H+     IE  A+ K  +  G++  GT  +
Sbjct: 168 EMSSYQID----LTPSLDPSVGILLNVTEDHIDRHGTIEHYAAVKERLVAGVQDGGTAII 223

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DD F      +    G + +    K   A       +   +            +  + 
Sbjct: 224 GVDDGFGRDAADRLERAGKRVVRISVKQPLASGITADRETIVQADGGASHE----VAKLD 279

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
                    N        +   A         +      G   R      QG    +++S
Sbjct: 280 GIGSLRGLHNAQNAAAAAAAALALGVGPDVLQNGLRSFPGLAHRMEQVGRQGTTLFVNDS 339

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
              N  +   A+S   +I     G+           G  S + +           I   +
Sbjct: 340 KGTNADATAKALSSFGEIFWIAGGKPKT-------GGIDSLAEYFP--------RIRKAY 384

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLV----DGDVVVV---KSS------ 452
           L G         L   +    S T+D                  VV++    +S      
Sbjct: 385 LIGEAAQEFAATLEGRVPYEISVTLDNAVPAAARDAASSGLPEPVVLLSPACASFDQFRN 444

Query: 453 ---NSCGFYRLINLL 464
                  F  L+  L
Sbjct: 445 FEIRGTKFRDLVTAL 459


>gi|325473282|gb|EGC76477.1| hypothetical protein HMPREF9353_02272 [Treponema denticola F0402]
          Length = 268

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 18/120 (15%)

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           Y   P+S       + +      G+ I++ G     GE       +   + +LY+   V 
Sbjct: 123 YAHTPSSFMTIFPSIKERIKKSGGKVISLFGS---GGERDVKKRPEQGRIAALYS-DIVI 178

Query: 406 LSGFHVLA---------LKDALPRSIHVH---YSETMDGLFLFIQSSLVDGDVVVV--KS 451
           L+               +    P                      S     D V++  K 
Sbjct: 179 LADEDPRGEDSVELLEMIAAGCPEKKRGEELFIIPDRPSAIKKAFSLAGKNDAVLLLGKG 238


>gi|282851635|ref|ZP_06261000.1| bifunctional protein FolC [Lactobacillus gasseri 224-1]
 gi|282557603|gb|EFB63200.1| bifunctional protein FolC [Lactobacillus gasseri 224-1]
          Length = 262

 Score = 39.8 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 43/108 (39%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               + +A  ++L  I    +G+   +LG M +  +G ++  F  +    ++L  I +  
Sbjct: 147 DGAHNFQAMTNLLHLIRKENQGQIYILLGMMKDKDLGLVTNLFKDE---KVTLTRIDY-- 201

Query: 406 LSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D         +Y E     +  +++ L   D+++V  S
Sbjct: 202 ---PRAARLEDFPAEAQKKYNYEENFKIAYTNLKNKLKPHDILLVTGS 246


>gi|326624190|gb|EGE30535.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVVQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|256830373|ref|YP_003159101.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579549|gb|ACU90685.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 430

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 112/389 (28%), Gaps = 64/389 (16%)

Query: 64  GAGLVVVNTDMVASIGSLSIPV-FGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA L+V++  +  S  +  +P    V   L    +LA          IIA+TG+ GKTTT
Sbjct: 71  GADLIVLSPGIARSKVASLLPAGVQVVSEL----ELASWF---VSEPIIAVTGTNGKTTT 123

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD-VDFGIFELGMSHLGEIRFLTHL 181
             +++  L +  K          +IG PL    +  +  D  + E+    L      +  
Sbjct: 124 TTLISRILEANGKKVFTG----GNIGTPLCEYLLGAEQADILVLEVSSFQL----QNSPS 175

Query: 182 VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHA 241
             P + V+   +  HL     +EE  SAK  +F  +       +          +  + +
Sbjct: 176 FHPRVGVLLNFSANHLDYHETMEEYLSAKLSMFTHMGAEDLAVVPLSMKDELEKRDFTRS 235

Query: 242 LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG 301
             +  + S   +          +                                     
Sbjct: 236 RRVYFVASPRFTCPGLPGEHNRENME---------------------------------A 262

Query: 302 IVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLS 361
                     +                R            ID+S +    SM AA+    
Sbjct: 263 AYLACRYFGLSPEDVQRGIDGFSTLAHRIEAVAEHNGIVFIDDSKSTTIDSMIAALKSQD 322

Query: 362 QISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR- 420
                       + G + + G+L           +    +  V+L G      ++A    
Sbjct: 323 -------RPVRLLAGGVFKGGDLGAVL------PVLREKVRAVYLFGQSREIFEEAWSDC 369

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              + +  T++       +    G+ V++
Sbjct: 370 GKEISWDATLEEAVFRAAADARSGECVLL 398


>gi|297521613|ref|ZP_06939999.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli OP50]
          Length = 294

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 208 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADAKAE 267

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 268 DTVLVCGS 275


>gi|227825148|ref|ZP_03989980.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidaminococcus sp. D21]
 gi|226905647|gb|EEH91565.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidaminococcus sp. D21]
          Length = 347

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 18/108 (16%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGF---VNGISIDSRSIAPQEAFFAIKGPHYDGHDF 56
           M  +  T  +L   +QG  I   P      VNG+        P E  FA+         +
Sbjct: 1   MLAMEKTLQELADLLQGSIIQGDPSLKLTGVNGLE----EAGPTEISFAVPP-------Y 49

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
           +  A +  AG +++  +           +  V +   A  KL +  R 
Sbjct: 50  LELAGKSRAGAIMIPEEGELKGPQA---LIRVKNPRAAFAKLLMLFRP 94


>gi|157144744|ref|YP_001452063.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Citrobacter koseri ATCC BAA-895]
 gi|157081949|gb|ABV11627.1| hypothetical protein CKO_00471 [Citrobacter koseri ATCC BAA-895]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L         +++   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGTVYDSVALAWHAALAEAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|116074302|ref|ZP_01471564.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
 gi|116069607|gb|EAU75359.1| Probable UDP-N-acetylmuramate-alanine ligase [Synechococcus sp.
           RS9916]
          Length = 483

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 126/415 (30%), Gaps = 60/415 (14%)

Query: 65  AGL--VVVNTDMVASIGSL------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           A    VVV++ +      L       + V    DVL AL           +   IA+ GS
Sbjct: 73  AAAPQVVVSSAIPEHNPELKAAREQGLTVLHRSDVLAALID---------EQPAIAVAGS 123

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++T  L++  +    +                  +    + E   S    ++
Sbjct: 124 HGKTTTSTVITTLLAAAGEDPTAVIGGVVPC---YGSNGHAGEGRLLVAEADESDGSLVK 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           F  H     + VIT +   H  +++ + ++         G         N+DD       
Sbjct: 181 FAAH-----LGVITNLELDHTDHYADLNDLIGTLKRFGNGCTHL---LANHDDPILREHF 232

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW-MEVQLQGKSMEVVHHGIGYHMAQN 295
                      +S   ++  DF         + +     +       +     G H   N
Sbjct: 233 QAQA------WWSVSSAEGVDFAALPVTLEGDHTEADFYERGRLIGRISLPMPGLHNLSN 286

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
               L    +           LS   P   R              LI + Y  +P+ ++A
Sbjct: 287 ATAALAACRMEGIPFAHLQDGLSQLSPPGRRFDFRGDWEG----RLIVDDYAHHPSEVRA 342

Query: 356 AISVLSQI-----SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS--- 407
            + +   +     SP  +     ++         +Q F  D A  LS      V L+   
Sbjct: 343 TLDMAQLMLSSGRSPLPQPPERLLVVFQPHRYSRTQEFLDDFARALSSA--DSVILAPIY 400

Query: 408 --------GFHVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                   G +   L DAL R I    V  + +MD L   +Q      D+V+   
Sbjct: 401 AAGEAPIDGVNSHTLGDALQRLIPDRSVLVANSMDQLTALVQEHSRPQDLVLAMG 455


>gi|291569849|dbj|BAI92121.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrospira
           platensis NIES-39]
          Length = 454

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 121/364 (33%), Gaps = 35/364 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSYNNHIGV 149
             + ++ +A R       + ITG+ GKTTT  ++        S       IG+    + +
Sbjct: 89  ETIGEMELAWRNLQDIPWVGITGTNGKTTTTALIAKIFEVAGSAAPACGNIGNAACELAL 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                     +D+ I E+    +      +  + P I + TT  P HL+    ++     
Sbjct: 149 -QQQQNSSTPLDWVIAEISSFQI----ESSSTLAPKIGIWTTFTPDHLNRHYTLDNYFRI 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K  +           +   +     L+  +  L  + +++           R      ++
Sbjct: 204 KGRL------MERSQVQVFNGDDAYLRRAAPELWPQAVWTSVNGAEELLGDRVMGVYIQE 257

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +W+    +  +       +G H  QN+LM +    I   D +    A+S+F        R
Sbjct: 258 NWVYQNGEAIAPVDSLKMVGDHNRQNLLMAVAAARIAGIDKEAIAHAISIFPGV---PHR 314

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  + +  ++ +           I + G   + G+ +   +
Sbjct: 315 LEEVSAWMGIRWINDSKATNYDAAQVGLAAVEP-------PVILIAGGEAKAGDDTDWIN 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRS--IHVHYSETMDGLF---LFIQSSLVDG 444
               +  +      V L G    A  + L  +   +V   ET++        + S L   
Sbjct: 368 TIHQKAAA------VLLIGSAASAFAERLQETHYQNVEIVETLENAIPRAAQLASVLQAK 421

Query: 445 DVVV 448
            V++
Sbjct: 422 AVLL 425


>gi|84495983|ref|ZP_00994837.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
 gi|84382751|gb|EAP98632.1| UDP-N-acetylmuramate--alanine ligase [Janibacter sp. HTCC2649]
          Length = 488

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 111/355 (31%), Gaps = 23/355 (6%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIF 165
             +  +A+ G+ GKTTT  MLT+AL +     +                      D  + 
Sbjct: 118 HDSRPVAVAGANGKTTTTSMLTVALQAADLDPSFASGGEL---TGQGTNAAWTGGDVFVV 174

Query: 166 ELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFL 225
           E   S    + +      P +A++T + P HL  +   + +  A A   + +   G +  
Sbjct: 175 EADESDGSFLVYG-----PEVAIVTNVQPDHLDFYGTFDNVQRAYASFADSIRSDGLLVA 229

Query: 226 NYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVH 285
             DDS    L + + A+G   + ++G    AD  L   +   E       L+        
Sbjct: 230 CADDSGSLFLASNA-AIGGTRVLTYGFDDTADLTLADHRADDEGIGTTTTLRLPDGSTAT 288

Query: 286 HGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES 345
             +    A N L         T         +          +R            + + 
Sbjct: 289 MRLATPGAHNALNAAAAYLAATEGFGADAALVLEGLAGFDGARRRFEVRGDVAGVTVVDD 348

Query: 346 YNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN-ISHV 404
           Y  N   + A +   ++I+    GR          +   ++ F    A  L+  + +  +
Sbjct: 349 YAHNAGKVAAVVRTAAEIAARRGGRLHVAFQP--HLYSRTRDFAQGFATGLAPAHTVVLL 406

Query: 405 WLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            + G             + A    LP    V    T   +   +     +GD+V+
Sbjct: 407 DVYGAREQPMEGITSELIAAPLRDLPGERSVSVGGTFASVAAHLAEIASEGDIVL 461


>gi|332879978|ref|ZP_08447662.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681974|gb|EGJ54887.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 305

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNG---ISIDSRSIAPQEA-FFAIKGPHYDGH-DFILH 59
           +T   +   I    IG      V G   I +    + P +  F        D H  +   
Sbjct: 7   YTLKQIATIINAKYIGDD-DFSVLGMNEIHV----VQPGDIVFV-------D-HPKYYDK 53

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA-TIIAITGSVG 118
           A+Q  A +V++N ++    G     +   DD     NKL    +   KA +++A T  +G
Sbjct: 54  ALQSKATIVLINKEVECPEGKA---LLISDDPFRDFNKLTDFFKPFVKAFSLVAPTAVIG 110

Query: 119 KTTTKE 124
           K T  +
Sbjct: 111 KNTIIQ 116


>gi|228987709|ref|ZP_04147820.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771983|gb|EEM20438.1| Folyl-polyglutamate synthetase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 433

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 72/290 (24%), Gaps = 26/290 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T+++ P + +IT I   H+          + +           +        
Sbjct: 147 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKA-----GIIKSGVPVITGV 201

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E        +  +   +  +  N    L K      + +          +V     G 
Sbjct: 202 QDEEALQVIQKVAKENHANLYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGS 261

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  + L  V  +   +   I+   +    +      R    Q    +I +  +   
Sbjct: 262 HQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAYWVGRFEKLQSNPDIIIDGAHNPE 321

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------LSLYNIS 402
                  +V S             LGD        +  H  + ++         + +   
Sbjct: 322 GIESLVKTVESHYKDKNVIVLFTALGD--------KQLHNMVGQLETIADEIIFTTFAFD 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              L+G           +       E            L + DV ++  S
Sbjct: 374 RAILAGELASY-----SKKESKLVFENWKEAIDTKVEMLGENDVFIITGS 418


>gi|212712253|ref|ZP_03320381.1| hypothetical protein PROVALCAL_03339 [Providencia alcalifaciens DSM
           30120]
 gi|212684999|gb|EEB44527.1| hypothetical protein PROVALCAL_03339 [Providencia alcalifaciens DSM
           30120]
          Length = 442

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 21/284 (7%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H        E    +     G+ + G   +  +  
Sbjct: 162 GLGGRLDATNVVDADIAAITSIALDHTDWLGSDREHIGHEKA---GIFRQGHYGVVGEPD 218

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             + + A +  +G             ++            W     Q    ++    +  
Sbjct: 219 MPDAIGAYADKIGTMLFRRGKDWHYQEYADH---------WSWESPQRSWEDLPLPNVPL 269

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +  +   +   I   ++           R  +      +I +  +   
Sbjct: 270 ANAATAMGVISCLMEIDPVLAQKITNKAIHQGLSTAQLPGRFQIIGENPLMILDVAHNPH 329

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           A+      +       G   R  V  LGD    G L+          L+          G
Sbjct: 330 AAGYLVSKLAQLPRREGRRIRAVVGMLGDKDIQGTLTCLSQQVTDWYLAPLRE----FRG 385

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             V  L   +      H  ++++  +          DV+VV  S
Sbjct: 386 ADVTELSKHIDG---AHEFDSVEAAWRQACVDAKPQDVIVVCGS 426


>gi|325524578|gb|EGD02605.1| ribosomal RNA large subunit methyltransferase E [Burkholderia sp.
           TJI49]
          Length = 220

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-SGFHVLALKDA 417
            L  +          + GD  E     +  H  L +VL    +  V      ++  +  A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----DEVLH-QLEDVLEGRPVDLVISDMAPNLSGVASA 144

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              +  + +   +     F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 145 --DAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|260598735|ref|YP_003211306.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Cronobacter turicensis z3032]
 gi|260217912|emb|CBA32494.1| Bifunctional protein folC [Cronobacter turicensis z3032]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G     L + L  S      +++   +    +     D V+V  S
Sbjct: 362 GARAEELAEHLQASA---VFDSVAQAWHAALADAQPADTVLVCGS 403


>gi|167549628|ref|ZP_02343387.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325340|gb|EDZ13179.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVVQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|168261611|ref|ZP_02683584.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|197265857|ref|ZP_03165931.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244112|gb|EDY26732.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205349472|gb|EDZ36103.1| tetrahydrofolate synthase/dihydrofolate synthase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L      +  +++   +     +    
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVVQAWQAAIDAAQPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|327283211|ref|XP_003226335.1| PREDICTED: ankyrin repeat and LEM domain-containing protein 2-like
           [Anolis carolinensis]
          Length = 991

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLEEFP 469
           D L R+  VH  E        ++         ++K S    F       +    + + FP
Sbjct: 213 DILARNERVHVYEDKKEALQAVK---------MIKGSRFKAFSTREEAEKFAKGICDYFP 263


>gi|189501740|ref|YP_001957457.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Amoebophilus asiaticus 5a2]
 gi|226740704|sp|B3ER76|LPXD_AMOA5 RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|189497181|gb|ACE05728.1| hypothetical protein Aasi_0290 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 338

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILH-AVQK 63
           +T  ++ Q I GH +G      ++ +      I       AI G       F+ + + +K
Sbjct: 3   FTIKEIAQLIGGHVVG-DASINIHKLC----KIQE-----AIPGSIT----FLANPSYEK 48

Query: 64  -----GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
                 A  V++N +      S+S  +  V+D   +  KL      
Sbjct: 49  YLYTTQASAVIIN-NSFQPERSVSPSLILVEDPYASFTKLLAHYYQ 93


>gi|301058489|ref|ZP_07199502.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
 gi|300447411|gb|EFK11163.1| putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [delta proteobacterium NaphS2]
          Length = 399

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 123/376 (32%), Gaps = 36/376 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPV--DVDFGIFE 166
             I ++G+ GKTTT  ++   L                 G+P          +  + + E
Sbjct: 40  KAIVVSGTHGKTTTASLVAWILEQAGMDP-----GFMIGGIPRNFESNFKLGEGAYFVIE 94

Query: 167 LGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S   +         P + ++T+I   H   +  ++ +  +  ++   +   G + 
Sbjct: 95  GDEYDSAFFDKGPKFLHYNPSLVILTSIEFDHADIYRNLDHVVDSFRKLIHLIPGDGYLI 154

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N D    + +  +     +  + ++G  K  D++L       + +   V   G+  +  
Sbjct: 155 ANGD----DKIICRETKGALCKLETYGFDKANDWRLGDVGDSEDLTAFSVIRNGQEEDNK 210

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                     N+   L  V  L   +  +  ALS+        KR +  + +     + +
Sbjct: 211 TFKTPLFGRHNVSNCLSAV-ALAHALGVSKGALSMALESFKGVKRRQEIIGKKRGITVMD 269

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
            +  +P +++  +  +    PH        L  + E    S   +I  A+    ++   +
Sbjct: 270 DFAHHPTAVRETVRAVKGKYPHRR------LVVVFEPRSNSSRRNIFQAQYAESFDAGDL 323

Query: 405 WLSGF-------------HVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
            +                    L   L    +  +     D L   + SS+   DVV++ 
Sbjct: 324 MMIREPAMVEKIPIHERFSARKLVSQLSEMGLEAYSFGETDELLEELLSSVKKDDVVLI- 382

Query: 451 SSNSCGFYRLINLLLE 466
            SN  GF  L    LE
Sbjct: 383 MSNG-GFDNLHQRFLE 397


>gi|315638475|ref|ZP_07893652.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
 gi|315481466|gb|EFU72093.1| conserved hypothetical protein [Campylobacter upsaliensis JV21]
          Length = 314

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
               +L + +    +       V G +++ +++ P  AFF       D  + +  AV++G
Sbjct: 1   MKISNLSELLNAKVLNEGSMLSVGGFALNLQALKPTYAFF-----SNDEEE-LKEAVKRG 54

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           A +VV   +++  +    +     +D+  AL +L            I
Sbjct: 55  AFVVVSEKEII--VEDKDVFYLLCEDLTKALLRLLRFLSEEKNLQFI 99


>gi|217970570|ref|YP_002355804.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Thauera
           sp. MZ1T]
 gi|217507897|gb|ACK54908.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase [Thauera
           sp. MZ1T]
          Length = 344

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 14/101 (13%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEA-FFAIKGPHYDGHDFILHAV 61
           ++  H+L+  + G  I       V+ + ++D       +  F A          ++    
Sbjct: 1   MFRLHELVDRLGGE-IAGDGDVAVSRVGTLD--KAGEGDLAFLA---NR----KYLSQVG 50

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
           +  A  ++V  D+  ++   ++      D      ++A   
Sbjct: 51  ECAASALIVTPDLREALAGRNL--ILTADPYLYFARVAQLF 89


>gi|255027929|ref|ZP_05299915.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-003]
          Length = 240

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 68  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 118

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D ++   E        + +     +P  A++T 
Sbjct: 119 AIRPTSYLIGDGTG---------NGTKDAEYFALEACEYQRHFLAY-----KPTYAIMTN 164

Query: 192 IAPAHLSNFSGIEEIASAK 210
           I   H   F  ++++ +A 
Sbjct: 165 IDWDHPDYFKSVDDVFNAF 183


>gi|116326999|ref|YP_796719.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116332335|ref|YP_802053.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116119743|gb|ABJ77786.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116126024|gb|ABJ77295.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 465

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 48/414 (11%), Positives = 104/414 (25%), Gaps = 45/414 (10%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+ +G          V    +  +    +         +           +I + G+
Sbjct: 66  VGNAISRG-------NPEVEETLNSGLNYLSMP------AAIGEFFLK--GKKVIVVAGT 110

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  ++   L                 G P        +  + + E          
Sbjct: 111 HGKTTTTFLIHHILKENGIEPGLFVGGIRKDGFPGFELG---NGSYFVIEGDEYDTAFFD 167

Query: 177 F--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                   RP  AV+  +   H   F  I  I +    +   +   G +F        + 
Sbjct: 168 KSSKFLHYRPTYAVLNALDFDHADIFPDISAIETMFKRLINLVPGNGKVFYWSGSGSLKK 227

Query: 235 LKA-----KSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
           +       K          SF   K  +  L   K              +    V   I 
Sbjct: 228 MIQNVKFTKVEGFEWNRKDSFLTWKKHELFLGDQKLNPVLFGDHNYRNIEVAIRVCSEIL 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI---DESY 346
                +        +I +       + +    P     + +         T+        
Sbjct: 288 KTQNPSDYKQGIAKAIDSFPGVKRRQDILFQSPTAIVMEDFAHHPVAVHETIHAVKKRFQ 347

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
                S+    S  S  +   +    + +G    +     +    +++ + L        
Sbjct: 348 GHKIISLFEPRSATSHRNVFQKEYSYSFIGSDLTILTEIHNL-KKVSKDIRL-------- 398

Query: 407 SGFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVD--GDVVVVKS-SNSC 455
               V  L   L ++      Y++    L   ++  +    G  +++ + SN  
Sbjct: 399 ---DVKKLVQKLLKNSKTIPVYAKDPAELLAKLEKMIPQFTGQKILILAMSNGS 449


>gi|39997364|ref|NP_953315.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Geobacter sulfurreducens PCA]
 gi|60390055|sp|Q74AT5|LPXD_GEOSL RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|39984255|gb|AAR35642.1| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Geobacter
           sulfurreducens PCA]
 gi|298506301|gb|ADI85024.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Geobacter sulfurreducens KN400]
          Length = 347

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 22/108 (20%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-----SIDSRSIAPQEAFFAIKGPHYDGHD 55
           M    T  +L   + G  +G   +  V G+     + DS  I     F A          
Sbjct: 1   MAVSKTLQELADYLGGTLVGDGSRQIV-GVASLDDATDS-QIT----FLANP-------R 47

Query: 56  FILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR 103
           +        AG V+    +       +     V +   A  +L     
Sbjct: 48  YAPKVASTRAGAVI----LPPGAERHNHNAIMVPNPYLAFARLLTLFY 91


>gi|91202857|emb|CAJ72496.1| similar to multifunctional folylpolyglutamate
           synthase/dihydrofolate synthase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 464

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 85/300 (28%), Gaps = 20/300 (6%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            +  + E+GM   G     T++V P ++VIT I   H++         + +       + 
Sbjct: 159 AEMAVLEVGM---GGRLDATNVVLPLVSVITNIGLDHVNILGNTIPRIAYEKA-GIIKKG 214

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
              I          ++K      G          +  D Q    K            QG 
Sbjct: 215 IPVISAAEKPEALSVIKEVCMEKGAPLYLLGKDIRIDDAQPYTNKNSRGLLCNIKTWQGV 274

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +    +G H A+N  M LG + +L      +I   ++           R  +     
Sbjct: 275 YGNLFIPLMGIHQAKNCAMALGALDVLREHGKISIDNETIREAFTHVRCPGRIEVLGETP 334

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            ++ +  +   +      ++   +  H    ++ V+     +G        ++   +   
Sbjct: 335 LIVLDFAHTVES----MAALRETLFEHFTFNKLVVI-----LGFSQDKDIDNILREIVPC 385

Query: 400 NISHVWLSGFHVLA-----LKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                     +  A     L   +            +     +  Q +    D++ +  S
Sbjct: 386 ANDIFVTKSTNSRAVPPEELAKKIKAVYGKRAEICNSARDAVIAAQHAASPDDLLCITGS 445


>gi|251779958|ref|ZP_04822878.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084273|gb|EES50163.1| tetrahydrofolate synthase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 437

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 108/320 (33%), Gaps = 26/320 (8%)

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L      VD+ + E+    LG     T+++ P ++VIT+I+  H++           +
Sbjct: 129 MYLYYYNEKVDYAVIEV---GLGGELDSTNVITPIVSVITSISFDHMNILGNS----LYE 181

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
             + +       I +       E ++A      I        + N+   +    +     
Sbjct: 182 IAMQKAGIIKEEIPVVVYPQTNEAMRAIIEKAKITNSKVCEINSNSGTFIEVKHEEKFYQ 241

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +++    +   V    +G H   N+ + L  + IL       +    + +  E    R 
Sbjct: 242 KVKIDTGKELYNVNLPLMGEHQILNLSVALTTIEILCEREGLILNKELIENSIESVKWRG 301

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  +      ++ +  +     +     + S +  + +   + +L     +G L+     
Sbjct: 302 RLEVLNKEPLIVMDGAHN----IDGIKMLKSNVKKYFKYNNVFLL-----LGILADKQVE 352

Query: 391 DLAEVLSLYNISHVWLSGFHVL------ALKDA-LPRSIHVHYSETMDGLFLFIQSSLVD 443
           ++ + ++      V+    H         LKD  L  + +    ++ +     + S    
Sbjct: 353 EMIKEITPMAY-KVYALTPHSDRAELNTELKDHILKYNKNTIALDSYEEAMKTVLSEATS 411

Query: 444 GDVVVVKSSNSC--GFYRLI 461
            D++++  S        ++I
Sbjct: 412 EDLILISGSLYMIGDMRKII 431


>gi|238060247|ref|ZP_04604956.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237882058|gb|EEP70886.1| UDP-N-acetylmuramate-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 488

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 132/351 (37%), Gaps = 34/351 (9%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +AI G+ GKTTT  M+T+ L                    +         +  + E   S
Sbjct: 123 VAIAGTHGKTTTTSMVTMVLQQAGAD---PSFVIGGEISEVGSGAHHGTGEHFVVEADES 179

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
                     + RP++++IT I   HL+ +  +  + +A AE     ++ G I    DD 
Sbjct: 180 -----DRSFLIYRPYLSLITNIEADHLNTYGDLATLEAAFAEFARLTDRRGFIVTCADDP 234

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIG 289
               L     A G + ++++G++ +AD +L +    ++      ++ G+S  E      G
Sbjct: 235 GGRRLAQTLRAEG-RRVHTYGEAADADLRLSEIVSSAQGVRYLAEIDGRSLGEFRLPVPG 293

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            HM  N    +    +L   V+ A  AL+ F     R +            L+ + Y  +
Sbjct: 294 RHMGLNSASAVLTAYLLGLPVEAAEAALAAFPGVRRRFE----RKGVADGVLVYDEYAYH 349

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI-SHVWLS- 407
           P SM  A+  L +++  G+GR I V                  AE+ +   I   + L  
Sbjct: 350 PTSMTLALQTLREVA--GDGRLIVVFQPYRLYRTRDLQ-----AEIAAALGIADELVLLE 402

Query: 408 ----------GFHVLALKDALP-RSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                     G    AL +A+P  +    +  + D + + +      GDVV
Sbjct: 403 VFGPGEVRQPGEGSAALVEAVPLPADRKVFVGSWDDVPVEVARRARPGDVV 453


>gi|217963816|ref|YP_002349494.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
 gi|217333086|gb|ACK38880.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Listeria monocytogenes HCC23]
          Length = 196

 Score = 39.5 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVH 425
           V   +   G+  +     +A++   Y+ + ++ S           +  +   +P S    
Sbjct: 78  VFVVVGCGGDRDKGKRPQMAKIAVDYSSNPIFTSDNPRSENPHAIIEDMIQGVPDSDSYV 137

Query: 426 YSETMDGLFLFIQSSLVDGDVVVV--KS 451
             E       F  +    GDV+++  K 
Sbjct: 138 VHENRRDAIRFAVNEAEAGDVILIAGKG 165


>gi|313144193|ref|ZP_07806386.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
 gi|313129224|gb|EFR46841.1| UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase
           [Helicobacter cinaedi CCUG 18818]
          Length = 464

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 49/428 (11%), Positives = 115/428 (26%), Gaps = 58/428 (13%)

Query: 60  AVQKGAG---LVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATIIAIT 114
           A++ G      ++V +    +      P    ++++ +  L K+ + +       I+ IT
Sbjct: 33  ALENGVVKEEALLVRSKQNMAFIPSDFPQ---ENLIESCDLGKVLLDSIPGENPRIVGIT 89

Query: 115 GSVGKTTTKEMLTIALSSIKKTY----ACIGSYNNHIGVP-------------LTLARMP 157
           G+ GKTTT  ++   L  +              N     P                    
Sbjct: 90  GTNGKTTTAAIIYSLLLDLGYKVALLGTRGFFINESTIKPKGLTTPSVLELYENLSFAKA 149

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D+ I E+  S    I+     +   + ++T I   HL     +EE    K   FE  
Sbjct: 150 KGCDYFIMEV--SSHAIIQERIAGLNFELKILTNITSDHLDYHKSVEEYRRVKNSFFEER 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                                 +       Y   K  +        +   +        +
Sbjct: 208 GLKLINADEKYAQC-----QDQYGDIGVFYYGVEKKGHLSVGAYALESGIDAHIAWRDNK 262

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             S E        +   N+   L  ++ +    +  +  ++      G        ++  
Sbjct: 263 ECSQESCALQTYLYGKHNLYNALAGIAAVKILTNKPLCKIAQAMENFGGVSGRMEVVHHK 322

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              ++D ++  +         +          +   V G     G              +
Sbjct: 323 PLVIVDFAHTHDG--------MKQIFESFRHQKIAVVFGA----GGDRDKSKRPKMGACA 370

Query: 398 LYNISHVWLSGFHVL---------ALKDALPRSI--HVHYSE-TMDGLFLFIQSSLVDGD 445
                 ++++  +            +   LP+     +   E       +   + L + +
Sbjct: 371 FEYADKLYITSDNPRSEDPSEILQDIASGLPKECGRKLVVMEVDRKKAIIQALNELQENE 430

Query: 446 VVVV--KS 451
           V+++  K 
Sbjct: 431 VLLILGKG 438


>gi|319426836|gb|ADV54910.1| FolC bifunctional protein [Shewanella putrefaciens 200]
          Length = 423

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 401 ISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +L       G     L+  L    +    E +D  +  +++ +   DVV+V  S
Sbjct: 348 VDTWYLVSLHSERGASASQLRKTLAAEANAFEFEGIDAAWSALKAQISPDDVVIVFGS 405


>gi|120598386|ref|YP_962960.1| FolC bifunctional protein [Shewanella sp. W3-18-1]
 gi|146293536|ref|YP_001183960.1| FolC bifunctional protein [Shewanella putrefaciens CN-32]
 gi|120558479|gb|ABM24406.1| FolC bifunctional protein [Shewanella sp. W3-18-1]
 gi|145565226|gb|ABP76161.1| FolC bifunctional protein [Shewanella putrefaciens CN-32]
          Length = 423

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 6/58 (10%)

Query: 401 ISHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   +L       G     L+  L    +    E +D  +  +++ +   DVV+V  S
Sbjct: 348 VDTWYLVSLHGERGASASQLRKTLAAEANAFEFEGIDAAWSALKAQISPDDVVIVFGS 405


>gi|212635889|ref|YP_002312414.1| folylpolyglutamate synthetase [Shewanella piezotolerans WP3]
 gi|212557373|gb|ACJ29827.1| Folylpolyglutamate synthetase [Shewanella piezotolerans WP3]
          Length = 426

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 390 IDLAEVLSLYNISHVWLS--------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSL 441
            D A VL   +I              G +  +LK  LP          ++  +   Q   
Sbjct: 339 KDAAAVLVELSIDVTHWYLTDLDVPRGTNAESLKALLPPQSGASCFNNIESAWNAAQQQA 398

Query: 442 VDGDVVVVKSS 452
              DV++V  S
Sbjct: 399 NADDVIIVFGS 409


>gi|184156343|ref|YP_001844682.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|183207937|gb|ACC55335.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078397|gb|ABO13369.2| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
 gi|323516088|gb|ADX90469.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 457

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTINGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAATN--HAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|313144541|ref|ZP_07806734.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129572|gb|EFR47189.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 336

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
            I   + F A      D    I  A++ GA  ++ +   +  I S  I    V++V  +L
Sbjct: 19  QIQRGDVFIA-----NDSTQ-IPKAIESGAYGIIYDNPQMEMIDSE-IAWILVENVADSL 71

Query: 96  NKLAVAARLRSKATIIAI 113
            +L     L      I++
Sbjct: 72  IRLIRYKLLAKNIATISL 89


>gi|311086530|gb|ADP66611.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 59/414 (14%), Positives = 140/414 (33%), Gaps = 46/414 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI   ++     +  N   + +    +IP+         + ++ ++         IAI+
Sbjct: 48  DFI---IKS--SAISSNNKEILAAKKRNIPILL----RAEMIEILMSF-----KKGIAIS 93

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+                 N  +   +          + I E   S    
Sbjct: 94  GTHGKTTTTSMIADIFIDSGLD---PTVINGGLIKSINSYAKLGSSSYFITEADES---- 146

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P+I ++T I   H+ ++   +       + F    K  T++          
Sbjct: 147 -DASFLYLNPNIIIVTNIESDHIDHY---DNSFKKLKQTFLIFLKKITLYGTAIVCIDNN 202

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMA 293
                       I ++G +KNAD ++  +KQ +    +  +    K + ++ +  G H A
Sbjct: 203 AICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNIPGKHNA 262

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNA 348
            N    + +      + D  I +L  F     R +           ++    ++ + Y  
Sbjct: 263 LNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGH 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---- 404
           +P  +   I  +    P+       ++         + + + D  + LS  ++  +    
Sbjct: 323 HPTELSETIKTIRISWPNKN----LIMIFQPHRYTRTYNLYHDFVQTLSQVDVLLILHVY 378

Query: 405 -----WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                ++ G   L+L + + +    +V      + +   +  +L   D+++++ 
Sbjct: 379 SANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQG 432


>gi|134294645|ref|YP_001118380.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Burkholderia
           vietnamiensis G4]
 gi|166224755|sp|A4JB92|MURD_BURVG RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|134137802|gb|ABO53545.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           vietnamiensis G4]
          Length = 503

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 73/298 (24%), Gaps = 14/298 (4%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L           P  A I  I   HL      +  A+AK  IF      
Sbjct: 176 DVWVLELSSFQL----ETARTFAPDAAAILNITQDHLDWHGSFDAYAAAKGRIFGATTTR 231

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF--QLRKWKQCSEQSWMEVQLQG 278
                +     F      + A    T      +++ D+            ++        
Sbjct: 232 VLNRDDAAVMKFAPAAGAADAARTVTFGLGEPTRDGDYGLSRDNGIAWLVEAIDRDAPDE 291

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
            +        G H        L  V  L                           L    
Sbjct: 292 TTTTRRRKRDGAHTPDIAHKRLMPVDALRIRGLHNAANALAAFALARAIDLPAAPLLHAL 351

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEM------GELSQSFHIDL 392
                E++     +    +  +        G  +A L  + +       G+        L
Sbjct: 352 REYRGEAHRVEVIATIDDVDYVDDSKGTNVGATVAALDGLAQKIVLIAGGDGKGQDFAPL 411

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              ++ +    V L G    AL+  L    + +    T++G           GD V++
Sbjct: 412 VAPVARW-CRAVMLIGRDAPALRATLADTGVPLADHATLEGAVRAAAELAEPGDAVLL 468


>gi|229916435|ref|YP_002885081.1| UDP-N-acetylmuramate--L-alanine ligase [Exiguobacterium sp. AT1b]
 gi|259509772|sp|C4L4P1|MURC_EXISA RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|229467864|gb|ACQ69636.1| UDP-N-acetylmuramate/alanine ligase [Exiguobacterium sp. AT1b]
          Length = 435

 Score = 39.5 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             L +LA         T +AITGS GKT+T  +L   +  I+ T   IG           
Sbjct: 92  EFLGELANHY------TSVAITGSHGKTSTTGLLAHVMRGIEPTSFLIGDGTGEG----- 140

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
                 D    +FE        + +     RP  A++T I   H   FSG++++  A  E
Sbjct: 141 ----VADSKNFVFEACEYKRHFLYY-----RPDYAIMTNIDFDHSDYFSGLDDVIDAFQE 191

Query: 213 I 213
           +
Sbjct: 192 M 192


>gi|308187623|ref|YP_003931754.1| Folylpolyglutamate synthase [Pantoea vagans C9-1]
 gi|308058133|gb|ADO10305.1| Folylpolyglutamate synthase [Pantoea vagans C9-1]
          Length = 422

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLSLYN--ISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G    + +  L          +++  +   +      
Sbjct: 336 KDIAGTLAALAPMVDAWYCAPLDGPRGASAEQLLDVLPQGEAFNSVELAWQQARERAAPQ 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|229158075|ref|ZP_04286145.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
 gi|228625394|gb|EEK82151.1| Folyl-polyglutamate synthetase [Bacillus cereus ATCC 4342]
          Length = 433

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 73/290 (25%), Gaps = 26/290 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T+++ P + +IT I   H+          + +           +        
Sbjct: 147 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKA-----GIIKSGVPVITGV 201

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E        +  +   +  +  N    L K      + +          +V     G 
Sbjct: 202 QDEEALQVIQKVAKENHANLYEMGNHFTALHKQSSEDGEQFDFTCPFASFEDVRITMKGS 261

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  + L  V  +   +   I+   + +  +      R    Q    +I +  +   
Sbjct: 262 HQVGNAALALMAVMYVKTYLSFLIEEEEIRNGLQEAYWVGRFEKLQSNPDIIIDGAHNPE 321

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------LSLYNIS 402
                  +V S             LGD        +  H  + ++         + +   
Sbjct: 322 GIESLVKTVESHYKDKNVIVLFTALGD--------KQLHNMVGQLETIADEIIFTTFAFD 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              L+G           +       E            L + DV ++  S
Sbjct: 374 RAILAGELASY-----SKKESKLVFENWKEAIDTKVEMLGENDVFIITGS 418


>gi|300856627|ref|YP_003781611.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
 gi|300436742|gb|ADK16509.1| folylpolyglutamate synthase [Clostridium ljungdahlii DSM 13528]
          Length = 448

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 83/284 (29%), Gaps = 20/284 (7%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
           ++I +I+  H+          + +            ++    ++   + K  S       
Sbjct: 169 SIIASISYDHMQILGNTLAEIAHEKAGIVKSGIPVILYPEEKEAEEAIEKVCSERGSTLI 228

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSIL 306
                  +  D +            ++V  + +   +    +G H   N    L  +  L
Sbjct: 229 KVPCDCVEPEDQEKVDNNSKEYVQKIKVHTKKEDYHIKLSLLGRHQLTNCACALFAIEEL 288

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
           +       K   +      +       +++    +ID ++N    SM       +  +  
Sbjct: 289 SRYGFDIDKQTILKALSNVKWIGRLEVMHRKPLVVIDGAHNREGISMLR----KNLCTYF 344

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPR 420
              + I +LG + +  +  +     +  +        V           +   LK  + +
Sbjct: 345 NYNKMILILGILAD--KEVEVMVKTIVPLA-----ERVIAVTPNNTRAENSKELKGVIEK 397

Query: 421 -SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLI 461
            +      +T +  +    S   + D++++  S        ++I
Sbjct: 398 YNSKCEALDTYEEAYEKALSYCSEDDILLISGSLYMIGDMRKII 441


>gi|159028776|emb|CAO89947.1| cphA [Microcystis aeruginosa PCC 7806]
          Length = 877

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 116/378 (30%), Gaps = 43/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLAR 155
           S+  I+AITG+ GKTTT  +++       K                        P + + 
Sbjct: 486 SRVPILAITGTNGKTTTSRLISHICRQTGKVVGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEI 213
           +  D    I  L  +  G +R      +  + V+  +A  H  + +   IE++A  K+ +
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF---------QLRKWK 264
            E +   G   LN DD     +  K          S       D              + 
Sbjct: 606 AEVVSAEGYAVLNADDPLTASMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E  W     +  ++ V   G+   M  N L       +   D++   + +  F P  
Sbjct: 666 SILEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPSV 725

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            +        + G    + +  +       A    +     +  G ++ V+G     G+ 
Sbjct: 726 AQTPGRMNLFDLGHHHALIDYAHN-----PAGYEAVGGFVGNWSGEKVGVVGGP---GDR 777

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR---SIHVHYSETMD 431
                I L ++ +      + +           G     +   + +   S+         
Sbjct: 778 RDDDLILLGKLSAQM-FDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDET 836

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  S++ +G +VV+
Sbjct: 837 EALEKALSTVSEGGLVVI 854


>gi|156933091|ref|YP_001437007.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Cronobacter sakazakii ATCC BAA-894]
 gi|156531345|gb|ABU76171.1| hypothetical protein ESA_00901 [Cronobacter sakazakii ATCC BAA-894]
          Length = 431

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G     L + L  S      +++   +    +     D V+V  S
Sbjct: 371 GARAEELAEHLQASA---VFDSVAQAWHAALADAQPADTVLVCGS 412


>gi|331701261|ref|YP_004398220.1| FolC bifunctional protein [Lactobacillus buchneri NRRL B-30929]
 gi|329128604|gb|AEB73157.1| FolC bifunctional protein [Lactobacillus buchneri NRRL B-30929]
          Length = 443

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 77/276 (27%), Gaps = 18/276 (6%)

Query: 184 PHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALG 243
           P ++VIT+I   H+          + +            +     +   +++  ++    
Sbjct: 160 PKVSVITSIGWDHMHILGDTLSKIAFQKAGIIKPGVPVVVGGVDPEP-LKVIVNQAEHKQ 218

Query: 244 IKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIV 303
                     K  D     W Q  + S        +  ++    IG +   N  + +   
Sbjct: 219 SPIQILGQNFKVNDRGEHNWNQEFDFSSA----DFQLHDLKTALIGDYQTHNAALAIQAY 274

Query: 304 SILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQI 363
                    A+   ++           R        T++ +    N +++   +  L   
Sbjct: 275 IDYHQLTKRAVDVRNIQKGIAATRWAGRFEKISTKPTIVLDG-AHNISAVNLIVDTLQND 333

Query: 364 SPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-------D 416
            P G    I +L  M  + +      +D    +   +I     +G               
Sbjct: 334 FPQG---HIYIL--MGILADKQADKMVDKMATVQNASIILTRFAGPGKRLAANPEKLESQ 388

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              +  +V   +        ++  L   D++++  S
Sbjct: 389 LKTQPENVSAIDDWQDAIRELRRKLTPDDMLLITGS 424


>gi|255002719|ref|ZP_05277683.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Puerto Rico]
 gi|255003848|ref|ZP_05278649.1| UDP-N-acetylmuramate-alanine ligase (murC) [Anaplasma marginale
           str. Virginia]
          Length = 474

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 83/359 (23%), Gaps = 47/359 (13%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFEL 167
              I ++GS GKT+T  M+   +                              ++ + E 
Sbjct: 110 GRTIVVSGSHGKTSTTGMIASIMEHAGMDPTVFIGGIAFH---YGNNYKMGAGEWAVVEG 166

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S  G            IAV+T +   H   +S +E +    ++    ++  G   +  
Sbjct: 167 DESDAGFTELPC-----EIAVVTNLEWEHPDKYSCLEALERVFSDFLRNVKAGGASVMPS 221

Query: 228 DDSFFELLKAKSHA---------LGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
             SF     AK            L        G +   D      ++      + V  + 
Sbjct: 222 RLSFTLGNGAKCSKITYGLEGGDLRASNTTYMGDATVFDIVGLNGEEICCGVRLPVPGRH 281

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
                +               +         V    + ++                    
Sbjct: 282 NVENALAAAAVAKHIGVGCNYIKAGLEGFMGVGRRFEIIANVGGVTFVDDYAHHPTEIEA 341

Query: 339 FTLIDESYNAN--------PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL--SQSF 388
                +    +        P             +         +L D+   GE   S   
Sbjct: 342 SRNAAKLSTTSGRVIGILQPHRFTRVQHFFKDFTSAISKFDYLILTDVYPAGEEVISGCE 401

Query: 389 HIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
            +D+   +       V                     ++ T D +   + S    GDVV
Sbjct: 402 SLDIVREMKSRGFDQVV--------------------HASTPDTITDIVASVAQPGDVV 440


>gi|209517186|ref|ZP_03266031.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
 gi|209502322|gb|EEA02333.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp. H160]
          Length = 220

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E      S  + L E++    +  V         L   A
Sbjct: 90  ALDILPMEPVADVHFIQGDFRE-----DSVLVQLEELVGARQVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 IADAARIEHLCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKRQFKVV 194


>gi|72161512|ref|YP_289169.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Thermobifida
           fusca YX]
 gi|122063271|sp|Q47QX1|MURD_THEFY RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|71915244|gb|AAZ55146.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Thermobifida fusca
           YX]
          Length = 465

 Score = 39.5 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 106/360 (29%), Gaps = 37/360 (10%)

Query: 102 ARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD- 159
            RLR    + +A+TG+ GKTTT  ML   L +             ++G P+  A +    
Sbjct: 102 WRLRPAGQVWLAVTGTNGKTTTVRMLEAMLRA----DGRRALAVGNVGTPVIDAALADGP 157

Query: 160 --VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
              D    EL    L         V+PH A I  +AP HL    G+E  A+AKA+++   
Sbjct: 158 DRWDILAVELSSFQLHWSA----TVQPHAAAIINLAPDHLDWHGGMEPYAAAKAKVY--- 210

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +N  D     L           +        A           +++++     
Sbjct: 211 GAGTIRIVNAADPALRELAETHGDPAAPLVGFSLDVPRAGELGLVEDLLVDRAFVANPRT 270

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
             +       +      N+   L   ++  +         +     +    R        
Sbjct: 271 EATELATLADVTPRAPHNVANALAAAALARSIGVAPEAVRTGLRNFQPEPHRIAHVATID 330

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +D+S   N  +  A+++    +     G            G              +
Sbjct: 331 GVDYVDDSKATNAHAAAASLAAYPSVVWIAGGLLK---------GADVTGLVRQ-----A 376

Query: 398 LYNISHVWLSGFHVLALKDAL---PRSIHVHYSETMDG-----LFLFIQSSLVDGDVVVV 449
              +  V L G     L++AL      + V      D      +          GD V++
Sbjct: 377 ASRLRGVVLLGADRHQLREALDTHAPHVPVVDVARTDEGAMAEVVAAAARLAQKGDTVLL 436


>gi|260893411|ref|YP_003239508.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
 gi|260865552|gb|ACX52658.1| UDP-N-acetylmuramate/alanine ligase [Ammonifex degensii KC4]
          Length = 461

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 135/402 (33%), Gaps = 52/402 (12%)

Query: 67  LVVVNTDMVASIGSL------SIPVFGVDDVL-GALNKLAVAARLRSKATIIAITGSVGK 119
           LVVV++ +      L       IPV          L  +    R       IA+ G+ GK
Sbjct: 70  LVVVSSAIKPDNPELLAAREREIPVIR----RGELLAWVMRDYRG------IAVAGAHGK 119

Query: 120 TTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLT 179
           TTT  M+   L +             +  +     R+     + + E   S         
Sbjct: 120 TTTTAMVANVLLAGGLDPTV--LVGGYWPLIEGNCRLGKGS-YFVTEADES-----DASF 171

Query: 180 HLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKS 239
            L+ P +AV+T I   HL  +  +E +  A       +E  GT  +  D      L    
Sbjct: 172 LLLTPMLAVVTNIENDHLDYYGNLEALLGAFRTFLARIEPPGTAVVCLDSPLVRQLI--- 228

Query: 240 HALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLM 298
             +    + ++G  + AD+ L+K +     S   +  +G+   ++  +  G H   N   
Sbjct: 229 -GVLNIPVITYGMEEGADYILKKVELSGSSSSALLYYRGRLLGQLKLNLPGKHNLLNAAA 287

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            + + + L      A +AL+ F     R +    A       ++ + Y  +P  ++A I 
Sbjct: 288 AVAVGAYLGVPFAVASQALAEFRSVRRRFEFLGEAGG----VMVVDDYAHHPTEVQATIE 343

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGF------ 409
              QI     GR + V          +   + +        ++     ++ +G       
Sbjct: 344 AARQIHR---GRLVVVFQPHRY--TRTALLYPEFGRSFFGADVLVLDEIYPAGEPPLPGV 398

Query: 410 HVLALKDALPRSIH---VHYSETMDGLFLFIQSSLVDGDVVV 448
               +  A         ++   +      F++  +  GD+V+
Sbjct: 399 TAELIAKACQDHCPDLPLYRLPSTGKA-AFLKEIVSPGDLVL 439


>gi|218710308|ref|YP_002417929.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           splendidus LGP32]
 gi|218323327|emb|CAV19504.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           splendidus LGP32]
          Length = 343

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 35/123 (28%), Gaps = 17/123 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M  L T  +L     G   G      V+ ++ +D          F      +     +  
Sbjct: 1   MKNL-TLAELATITGGELHGDGT-VTVSAVAPMD--KAQEGNITFL----SNV---KYSK 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           H     A  ++V         +    V  V D   A  K+A  A   + A    I  S  
Sbjct: 50  HLGDCKASAIMVKESERELCKTN---VIVVSDPYVAFAKVA-QALDSTPAPATGIADSAS 105

Query: 119 KTT 121
            + 
Sbjct: 106 ISG 108


>gi|332160056|ref|YP_004296633.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607383|emb|CBY28881.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325664286|gb|ADZ40930.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-m
           eso-diaminopimelate ligase [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862055|emb|CBX72221.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Yersinia enterocolitica W22703]
          Length = 461

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 110/363 (30%), Gaps = 28/363 (7%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++AI G+ GKTTT  M+          Y          G     AR+     F I     
Sbjct: 105 VLAIAGTHGKTTTAGMVA--WILEACGYEPGFVIGGVPGNFDVSARLGNSPFFVIEADEY 162

Query: 170 SHLGEIRFLTH-LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
                 +        P   V+  +   H   F  ++ I      +   +  TG I +  +
Sbjct: 163 DCAFFDKRSKFVHYSPRTLVMNNLEFDHADIFDDLKAIQKQFHHLVRLVPGTGKIIVPDN 222

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D+  + + A       + +   G                   +          EV    +
Sbjct: 223 DNHLKQVMAMGCWSEQELVGETGSWFAR------KVAGDASVFEVFLDNELVGEVSWSLV 276

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H   N LM +     +      A +A           +R      +     + + +  
Sbjct: 277 GEHNMHNGLMAIAAARHVGVLPADACRA----LGDFINARRRLELRGEAHGVTVYDDFAH 332

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVL---GDMCEMGELSQSFHIDLAEVLSLYNISHVW 405
           +P ++ A ++ L      G  R +AVL    +  ++G         L           V+
Sbjct: 333 HPTAILATLAALRS-KVGGTARILAVLEPRSNTMKLGMCRNELAPSLGR------ADEVF 385

Query: 406 LSGFH---VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLIN 462
           L          ++ A       ++S  +D L   +  +   G+ ++V  SN   F  + +
Sbjct: 386 LFQPQHIPWQVVEVAEACIQPAYWSADIDTLVDMVVKTAQPGNHILV-MSNGD-FGGIHD 443

Query: 463 LLL 465
            LL
Sbjct: 444 KLL 446


>gi|291232873|ref|XP_002736378.1| PREDICTED: fibrillin 1-like [Saccoglossus kowalevskii]
          Length = 2722

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/210 (8%), Positives = 46/210 (21%), Gaps = 6/210 (2%)

Query: 182  VRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-----FELLK 236
              P  A      P +               +              Y              
Sbjct: 2151 CNPDSAHGHCCGPDNHCGHGPNSCHCETCIDYRGPWRHDKHCGPLYPMPNGDPAECSPHS 2210

Query: 237  AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            + +H  G       G +         +++   +   + +  G           +    ++
Sbjct: 2211 SHNHCCGPDGHCGHGPAYCECPSCIDYRRHEHEYECDNENGGCEHICNDRYHSHDCECHI 2270

Query: 297  LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY-NANPASMKA 355
              TL   +    D++   +       +          + +  F L ++ +   +      
Sbjct: 2271 GYTLNADNHTCDDINECDEENGGCEYECVNTIGSYYCVCEDGFILGEDHHSCVDENECLD 2330

Query: 356  AISVLSQISPHGEGRRIAVLGDMCEMGELS 385
              +    +  +  G       D  E+ E  
Sbjct: 2331 DNAGCEHLCNNTYGSYNCGCNDGYELSEDD 2360


>gi|300361443|ref|ZP_07057620.1| possible tetrahydrofolate synthase [Lactobacillus gasseri JV-V03]
 gi|300354062|gb|EFJ69933.1| possible tetrahydrofolate synthase [Lactobacillus gasseri JV-V03]
          Length = 419

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 46/108 (42%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               +++A  ++L  I    +G+   +LG M +  +G ++  F  +    ++L  I +  
Sbjct: 304 DGAHNLQAMTNLLHLIRKENQGQIYILLGMMKDKDLGPVTDLFEDE---KVTLTRIDY-- 358

Query: 406 LSGFHVLALKDALPRSIHVH-YSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D    +   + Y E  +  +  +++ L   D+++V  S
Sbjct: 359 ---PRAARLEDFPKEAQQKYNYEENFEVAYTNLKNKLKPHDILLVTGS 403


>gi|194868030|ref|XP_001972200.1| laminin B2 [Drosophila erecta]
 gi|190653983|gb|EDV51226.1| laminin B2 [Drosophila erecta]
          Length = 1639

 Score = 39.1 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/334 (8%), Positives = 56/334 (16%), Gaps = 15/334 (4%)

Query: 94  ALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147
           A++ +AV AR +        +  TG  G+ T                      +      
Sbjct: 289 AISDIAVGARCKCNGHASKCVPSTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS 348

Query: 148 --GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                        +          S         H +                NF   ++
Sbjct: 349 TSTEVNECKACNCNGLADKCFFDASLFNRTGHGGHCLDCRENRDGPNCERCKENFYMRDD 408

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                        ++     +        +            Y FG              
Sbjct: 409 GYCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDSGGS 468

Query: 266 CSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  +        +                                           
Sbjct: 469 HENTPACDTDTGICFCKENVEGRRCNECKPGFFNLDKTNRFGCTPCFCYGHTSECMTAPG 528

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     N+          N     +K      S  +       +        +G+ 
Sbjct: 529 YSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGDQ 588

Query: 385 SQSFHIDL------AEVLSLYNISHVWLSGFHVL 412
             S++ DL         ++   +S V L G    
Sbjct: 589 RASYNRDLKFKLQLVGQVANTGVSDVILEGAGSR 622


>gi|206900799|ref|YP_002250477.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
 gi|206739902|gb|ACI18960.1| folylpolyglutamate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 442

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 3/44 (6%), Positives = 14/44 (31%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  +      +  ++  +       F+       D++++  S
Sbjct: 383 EELANIVKVFRPNAEINIYDNFSSAISFVNKKASPADLILITGS 426


>gi|116629853|ref|YP_815025.1| folylpolyglutamate synthase [Lactobacillus gasseri ATCC 33323]
 gi|238853955|ref|ZP_04644312.1| tetrahydrofolate synthase [Lactobacillus gasseri 202-4]
 gi|311110509|ref|ZP_07711906.1| tetrahydrofolate synthase [Lactobacillus gasseri MV-22]
 gi|116095435|gb|ABJ60587.1| Folylpolyglutamate synthase [Lactobacillus gasseri ATCC 33323]
 gi|238833400|gb|EEQ25680.1| tetrahydrofolate synthase [Lactobacillus gasseri 202-4]
 gi|311065663|gb|EFQ46003.1| tetrahydrofolate synthase [Lactobacillus gasseri MV-22]
          Length = 419

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE--MGELSQSFHIDLAEVLSLYNISHVW 405
               +++A  ++L  I    +G+   +LG M +  +G ++  F  +    ++L  I +  
Sbjct: 304 DGAHNLQAMTNLLHLIRKENQGQIYILLGMMKDKDLGLVTNLFKDE---KVTLTRIDY-- 358

Query: 406 LSGFHVLALKDA-LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                   L+D         +Y E     +  +++ L   D+++V  S
Sbjct: 359 ---PRAARLEDFPAEAQKKYNYEENFKIAYTNLKNKLKPHDILLVTGS 403


>gi|116670129|ref|YP_831062.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
 gi|116610238|gb|ABK02962.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Arthrobacter sp.
           FB24]
          Length = 528

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 107/332 (32%), Gaps = 28/332 (8%)

Query: 97  KLAVAARLRSKATI---IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL 153
           +LA   R R        + ITG+ GKTTT  +    L +             ++G P+  
Sbjct: 128 ELAWRVRERKGRKTADWLTITGTNGKTTTVGLTESMLQAAGL----KAIAVGNVGTPILD 183

Query: 154 A-RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           A R PV+ D    EL    L         V P  +V   +A  H+          + KA+
Sbjct: 184 ALRDPVEYDVLAVELSSFQLHWSH----SVSPVASVCLNVAEDHVDWHGSYASYLADKAK 239

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           ++E   +   I+         +++      G + +     +              +++++
Sbjct: 240 VYEH-TQKACIYNAEQIETERMVENADVVEGCRAVGFTTLTPAISMLGVVEGLLVDRAFI 298

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-GKRYR 331
             +    +       +G    ++M+      + L        +A+            R +
Sbjct: 299 PERKDSAAELAAMADLGPVAPRHMVANALAAAALVRAYGAEPQAVRQGLKTYIPGEHRIQ 358

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
                     I++S   NP +  A++S  + +     G    V              + +
Sbjct: 359 LVARHNDVLWINDSKATNPHAAAASLSAFTNVIWIAGGLSKGV-------------SYDE 405

Query: 392 LAEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
           L +  +   +  V L G    AL DAL R   
Sbjct: 406 LVQEQAPR-LKAVVLIGADTTALSDALKRHAP 436


>gi|332852507|ref|ZP_08434246.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6013150]
 gi|332871289|ref|ZP_08439838.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6013113]
 gi|332729209|gb|EGJ60552.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6013150]
 gi|332731573|gb|EGJ62859.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii 6013113]
          Length = 356

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   YRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGE 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             +  A    AG  +V   +   +         VD+   A   L      +  +T I  T
Sbjct: 48  KHLDQAKVSRAGAYIVTAALKEHLPEKG-NFIIVDNPYLAFAILTHVFDKKISSTGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|239503928|ref|ZP_04663238.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii AB900]
          Length = 457

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKATLSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTINGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAATN--HAQVSRSLDEIIDRIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|222446083|ref|ZP_03608598.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435648|gb|EEE42813.1| hypothetical protein METSMIALI_01732 [Methanobrevibacter smithii
           DSM 2375]
          Length = 478

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 123/417 (29%), Gaps = 39/417 (9%)

Query: 66  GLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKT 120
             ++  T           L+ P+  VD +  A          +       + ITG+ GK+
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFELGMSH 171
           TT  ++   L +            +            +     +    +D+ + E+    
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLVIEVSEVQ 180

Query: 172 LGEIRFLTHLV-------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                 + H         +P + VIT IA  H+   + I+E+     ++   +    T+ 
Sbjct: 181 GWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAIGDGVTVL 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD   +L         +  + S   +   D              +  + +       
Sbjct: 241 NYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDN------------GIFYEGKRILENKD 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFT 340
                +H  QN+L  +     L  D++  ++ +  + P   R     +      +     
Sbjct: 289 LPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHENPLIVDDFAHNP 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              ++  A    + A    L  +      R + +     E    S   +  L    S   
Sbjct: 349 DGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTKLVLSSSNDV 408

Query: 401 ISHV-WLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + H+ ++         + L ++ I  +Y + +              D++++  +   
Sbjct: 409 VDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIGAQGM 465


>gi|255320724|ref|ZP_05361901.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262380645|ref|ZP_06073798.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
 gi|255302340|gb|EET81580.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SK82]
 gi|262297593|gb|EEY85509.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter radioresistens SH164]
          Length = 454

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 123/416 (29%), Gaps = 38/416 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +         +    +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAI-------EYMLDAGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSQSARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +  TG I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSTGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGIGYHMA 293
           +        +      G   +   +L      ++ S  +V +      EV     G H  
Sbjct: 229 VLEMGCWTPVIRT---GLDTDTQAELYAELIQADGSHFKVLEQGKVIAEVQWSMTGQHSV 285

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANP 350
            N L T+     +   +  A +ALS F   + R +     R       F     +     
Sbjct: 286 ANALATIAAAQHVGVSIVQACEALSSFGGVKRRMELLGTLRGIEVYDDFAHHPTAIETTL 345

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFH 410
              +  +      +          +G   +    S     ++        +         
Sbjct: 346 DGARKRLGERRLWAVIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------D 398

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  + +A P    V    ++D +   I     +GD VV+  SN  GF  L + LL 
Sbjct: 399 LQPVVEAAPNKSQVSR--SLDEIIQRIVQEAGEGDAVVI-MSNG-GFGGLHHKLLA 450


>gi|241140857|gb|ACS66819.1| integrin beta 1 [Plutella xylostella]
          Length = 828

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 46/269 (17%), Gaps = 15/269 (5%)

Query: 86  FGVDDVLGALNKLA--------VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTY 137
             V DV+    ++            R + +   + I+ S+                   Y
Sbjct: 431 LKVGDVVQFTAEITLKECPADPREWRQQFQIHPVGISESLLVELDMLCDCPCEHKGHHAY 490

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFG-IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH 196
               S  N  G+      +     FG   E      G         RP  +    +    
Sbjct: 491 DDSPSACNGFGISACGVCLCDPGRFGKACECSAQGGGASAEQERGCRPLNSTTGPLCSNR 550

Query: 197 LSNFSGIEEIASAKA------EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSF 250
            + F G  E              +   +                    +      T    
Sbjct: 551 GTCFCGQCECNKMDDPSMVISGPYCECDNFTCDMNKGLMCSGPDHGLCACGKCECTDEYS 610

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
           G +          +            +    + V +                        
Sbjct: 611 GPACQCLKSQEPCRSPENGKICNGNGKCVCGKCVCNVNDDQKYSGTFCEKCPACTGKCKE 670

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                   V              L  G  
Sbjct: 671 YKDCVLCEVHKRGPMFDMEAPPGLECGNC 699


>gi|56807398|ref|ZP_00365373.1| COG0769: UDP-N-acetylmuramyl tripeptide synthase [Streptococcus
          pyogenes M49 591]
          Length = 86

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 27 VNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMV 75
             +S DSR +  +  FFA KG  +   D++  A+  G  L +   D  
Sbjct: 31 FERLSYDSRQVDGKTLFFA-KGATFKA-DYLKEAITNGLQLYISEGDYE 77


>gi|329121151|ref|ZP_08249782.1| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Dialister
           micraerophilus DSM 19965]
 gi|327471313|gb|EGF16767.1| UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase [Dialister
           micraerophilus DSM 19965]
          Length = 344

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKG 64
           T  ++   + G   G  P   +  + S +S    P+ A FA KG +    ++I    + G
Sbjct: 4   TIGEIANLLGGTLYGN-PDIIIKDVKSAES--AGPEHATFA-KGVYV---EYINQ-FKAG 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAAR-LRSKATIIAITGSVGKTT 121
             +++V++     I +    +  V D  GA  KL       ++ A  I  T  +GK  
Sbjct: 56  --VILVDSP----IENCDKNLIVVRDCRGAFGKLIEIFYPEKTFAPQIHPTAVIGKNV 107


>gi|78223558|ref|YP_385305.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Geobacter metallireducens GS-15]
 gi|119371935|sp|Q39T44|LPXD_GEOMG RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
          N-acyltransferase
 gi|78194813|gb|ABB32580.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Geobacter metallireducens GS-15]
          Length = 345

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 16/100 (16%)

Query: 1  MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
          M    T  +L + + G  +       ++G+ S+D    A  +  F A          +  
Sbjct: 1  MAVSRTLRELAEYLGGT-VAGDESKTISGVASLD--DAADHQITFLANP-------RYAP 50

Query: 59 HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL 98
               GAG VV    +             V +   A  KL
Sbjct: 51 KVATTGAGAVV----LPPGGERHGRNAIHVANPYLAFAKL 86


>gi|332670125|ref|YP_004453133.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
 gi|332339163|gb|AEE45746.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Cellulomonas fimi
           ATCC 484]
          Length = 476

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 18/331 (5%)

Query: 97  KLAVAAR----LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
           +LA   R        A  +A+TG+ GKTTT  ML   L +  +          ++G P+ 
Sbjct: 90  ELAWRVRVPTASGEPAPWLAVTGTNGKTTTVGMLESVLRAAGRD----AVAVGNVGTPVV 145

Query: 153 LARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAE 212
           LA      D    EL    L     ++       A +  +AP HL     +E  A+AK  
Sbjct: 146 LAATDPARDVLAVELSSFQLHHTSSMSAQA----AAVLNVAPDHLDWHGSMEAYAAAKGR 201

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           +FE  +           +   + +A      +   ++ G        L +          
Sbjct: 202 VFEHAQVACVYNAADPMTEHLVREADVVDGCVAVGFTTGTPSVGQVGLVEDVLVDRGFAR 261

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
                   +  +            +    +   L A        +     ++G       
Sbjct: 262 LRHTHAAELGTLADLHRLAGPDGAVPPHVVADALAAAALALAHGVEPEAVRDGLRAYAPG 321

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
           +       ++D     + +    A +  + ++  G G  + V G + + G          
Sbjct: 322 SHRIAPVAVLDGVAYVDDSKATNAHAAAASLASFGPGSVVWVAGGLAK-GATFDELVAS- 379

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH 423
                   +  V L G     L++AL R   
Sbjct: 380 ----RRDRLRAVVLIGVDRAPLREALARHAP 406


>gi|313894629|ref|ZP_07828192.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440819|gb|EFR59248.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Veillonella sp. oral taxon 158 str. F0412]
          Length = 343

 Score = 39.1 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 25/110 (22%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSR---SIAPQEAFFAIKGPHYDGHDFILH-AV 61
           T  +L   + G  +G      +      +R       Q   FAI G       ++ H A+
Sbjct: 4   TLQELATLVGGRVVG-DESIVITE----TRGFEQAVKQSITFAI-GE------YVEHIAL 51

Query: 62  QKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
            + AG V+V +++        +    VD+   A  +            ++
Sbjct: 52  CQ-AGAVIVESEV----KDAPMAQIVVDNAKAAFAQ----VLELFHPPVV 92


>gi|188584358|ref|YP_001927803.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Methylobacterium populi BJ001]
 gi|179347856|gb|ACB83268.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Methylobacterium
           populi BJ001]
          Length = 455

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 109/353 (30%), Gaps = 39/353 (11%)

Query: 80  SLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC 139
              IP+ G  D+     + A  A    +A  +AITG+ GK+TT  +    L    +    
Sbjct: 91  QAGIPIIG--DIEIFCRERAALA---PEAPFVAITGTNGKSTTTALTAHLLRHAGRDVQM 145

Query: 140 IGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN 199
                 +IG  +     P +    + EL    +     LT  + P + ++  + P HL  
Sbjct: 146 G----GNIGTAVLSLAPPAENRVHVVELSSFQID----LTPSLDPSVGILLNLTPDHLDR 197

Query: 200 FSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ 259
              +E  A+ K  +  G +       +   +       +        +   G +      
Sbjct: 198 HGTMENYAAIKERLVAGSDLAVIGVDDAYCAAIAG--RRRGERIRLHVEGHGDAAGDYVC 255

Query: 260 LRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSV 319
                +  + + +      +S+   H+      A    + LG+     A    +   L+ 
Sbjct: 256 RAGAVRGPDGAVIAEISGIQSLLGEHNLQNAAAAVAAALRLGLTGAEIAAGLKSFPGLAH 315

Query: 320 FHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMC 379
                            G    +++S   N  S + A+     I          V G   
Sbjct: 316 R---------MEPLRRIGPTLFVNDSKATNADSTEKALLAFRDI-------HWIVGGKAK 359

Query: 380 EMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDG 432
           E G         LA +     ++H +L G    A    L   +     +T++ 
Sbjct: 360 EGGI------EPLAPLFDR--VAHAYLIGASSDAFAATLDGRLPFTRCDTLEA 404


>gi|126642987|ref|YP_001085971.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
           meso-diaminopimelate ligase [Acinetobacter baumannii
           ATCC 17978]
          Length = 420

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 30  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 74

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 75  HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 131

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 132 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 191

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 192 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 249

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 250 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTINGIEVYDDFAHHPTAIDTTLD 309

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 310 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 362

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 363 QPVIEAATN--HAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 417


>gi|330973393|gb|EGH73459.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 170

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 15/100 (15%)

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------A 413
           + PH +GR + + G     G         L   +       VW++  +            
Sbjct: 43  LRPHAKGRLLCLFG----CGGDRDRGKRPLMAGVVERLADGVWVTDDNPRSESPVSIFDD 98

Query: 414 LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV--KS 451
           ++     +  V + E        + +S    DVVV+  K 
Sbjct: 99  IRPGFVAADKVRFIEGRGQAIAELIASASADDVVVLAGKG 138


>gi|159900026|ref|YP_001546273.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893065|gb|ABX06145.1| UDP-N-acetylmuramate--alanine ligase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 443

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 87/325 (26%), Gaps = 26/325 (8%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
           VP   A         + E       E       + P I +IT +   H+  +    E  +
Sbjct: 137 VPALGASAAWGQGPLVLEAD-----EYARTFLALSPAIGIITNLDWDHVDIYPSQAEYDA 191

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
           A  E          +    D     +L          T ++  ++               
Sbjct: 192 AFREFAIKPSLQHLVLCGDDLGTQRVLADVPAIRCGLTEHNDWRATAVQATPDGMLFELI 251

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
               E      ++   H+     +A     + GI   +        +  +     +G+  
Sbjct: 252 SPAAEPMTVQLAVSGEHNVRNALLALAAAHSYGIDLAVAVAAIAHYQGAARRFEPKGQVG 311

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
             R   +     +   +  A       A  +++   PH   R  A L D           
Sbjct: 312 AVRVFDDYAHHPVEIRATLAAARKRFPAQRIVAYFQPHTFSRLEAFLADF---------- 361

Query: 389 HIDLAEVLSLYNISHVWLS-----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                E   L  I  V+ +     G     +   + +  +      +D  F  +   +  
Sbjct: 362 -QTAFEQADLVRIGAVYGARETSKGDPTAQIVAGM-QHPNALAVGDLDQAFEQLLRDVQA 419

Query: 444 GDVVVVKSSNSCGF---YRLINLLL 465
           GDVV+   +   G     RL+  L 
Sbjct: 420 GDVVLTLGA-GDGVVVGERLVAALR 443


>gi|329849874|ref|ZP_08264720.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
 gi|328841785|gb|EGF91355.1| UDP-N-acetylmuramate--alanine ligase [Asticcacaulis biprosthecum
           C19]
          Length = 475

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 123/408 (30%), Gaps = 35/408 (8%)

Query: 56  FILHA---VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           FI HA   V  G   +V +T +      +         ++     LA   RL+     IA
Sbjct: 63  FIGHATEHVSDGVCALVYSTAVKHDNPEMMEARRRRIPLVRRAEMLAELMRLQFS---IA 119

Query: 113 ITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHL 172
           + G+ GKTTT  M+   L +       +     +            D D+ + E   S  
Sbjct: 120 VGGTHGKTTTTSMVACLLDAGGMDPTVVNGGIINN---YGTNAKVGDGDWIVVEADES-- 174

Query: 173 GEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFF 232
                    ++  +A++T I   HL ++   E +     +  E +   G   +  D    
Sbjct: 175 ---DGSFLRLKSTLAIVTNIDAEHLDHWGDFEAVKKGFVDFVENIPFYGFAAVCIDHPEV 231

Query: 233 ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL------QGKSMEVVHH 286
           + L AK     +     +G S  A+ +        E +  +VQ            ++   
Sbjct: 232 QALAAKVENRRLIP---YGVSPQAEVRCLNISFGPEGALFDVQFSPTGVEPFTWEKIRLP 288

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE-- 344
             G H   N    + I   L    D     L+ F   + R                    
Sbjct: 289 MTGNHNVSNATAAIAIARELGVTEDAVRTGLAGFGGVKRRFTTTGVVDGIRIIDDYGHHP 348

Query: 345 ---SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
              +     A   +   V++ + PH   R   ++ +       + +  +          I
Sbjct: 349 VEIAAVLTAARQVSQGKVIAVVQPHRYTRLRDLMTEFSSCFHDADAVIVADVYSAGETPI 408

Query: 402 SHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                 G    AL + L R  H      +    L   + +    GD+V
Sbjct: 409 D-----GVSKTALVEGLHRFGHRNAVALDGPAALAGLVAAEARPGDLV 451


>gi|188589067|ref|YP_001921653.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499348|gb|ACD52484.1| folylpolyglutamate synthase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 437

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 109/322 (33%), Gaps = 26/322 (8%)

Query: 149 VPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS 208
             + L      VD+ + E+    LG     T+++ P ++VIT+I+  H++          
Sbjct: 127 TAMYLYYYNEKVDYAVIEV---GLGGELDSTNVITPIVSVITSISFDHMNILGNS----L 179

Query: 209 AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
            +  + +       I +       E ++A      I        + N+   +    +   
Sbjct: 180 YEIAMQKAGIIKEEIPVVVYPQTNEAMRAIIEKAKITNSKVCEINSNSGTFIEVKHEEKF 239

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
              +++    +        +G H   N+ + L  + IL       +    + +  E    
Sbjct: 240 YQKVKIDTGKELYNANLPLMGEHQILNLSVALTTIEILCEREGLILNKKLIENSIESVKW 299

Query: 329 RYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF 388
           + R  +      ++ +  +     ++    + S +  + +   + +L     +G L+   
Sbjct: 300 KGRLEVLNKEPLIVMDGAHN----IEGIKMLKSNVKKYFKYNNVFLL-----LGILADKQ 350

Query: 389 HIDLAEVLSLYNISHVWLSGFHVL------ALKDA-LPRSIHVHYSETMDGLFLFIQSSL 441
             ++ + ++      V++   H         LKD  L  + +    ++ +     + S  
Sbjct: 351 VEEMIKEITPMAY-KVYVLTPHSDRAELNTELKDHILKYNKNTIALDSYEDAMKTVLSEA 409

Query: 442 VDGDVVVVKSSNSC--GFYRLI 461
              D++++  S        ++I
Sbjct: 410 TSEDLILISGSLYMIGDMRKII 431


>gi|37527056|ref|NP_930400.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Photorhabdus luminescens subsp. laumondii TTO1]
 gi|36786489|emb|CAE15544.1| FolC bifunctional protein [Includes: Folylpolyglutamate synthase
           (Folylpoly-gamma-glutamate synthetase) (FPGS);
           Dihydrofolate synthase] [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 432

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 33/290 (11%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   IA IT+IA  H+       E    +     G+ +     +  +  
Sbjct: 149 GLGGRLDATNIVDADIAAITSIAIDHIDWLGADREHIGREKA---GIFRKDRFAVVGEPD 205

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               +   +  LG K        +              ++W           +    +  
Sbjct: 206 MPSSIAEVAGELGAKLFRCGIDWRF---------SQQNKNWHWQSDDRLFSNLPLPNVPL 256

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   +  +  +      V  AI   ++    +      R  + +    LI +  +   
Sbjct: 257 MNAATAMGVICCLLRQDDKVSRAINESAIHQGLQNAQLPGRFQIVREKPLLILDVAHNPH 316

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS- 407
           A+      +       G      +LG +  +G+       D+A  L+     I+  + + 
Sbjct: 317 AAAYLVQKLAQLPRQPGSR----ILGVVGMLGD------KDIAGTLTCLSQQINEWYCAP 366

Query: 408 -----GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                G     L   L +         ++  +        + D+VVV  S
Sbjct: 367 LTEQRGADAQTLAQHLGQP---RIFTDVESAWHQAMVDADEQDIVVVCGS 413


>gi|193213214|ref|YP_001999167.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
 gi|193086691|gb|ACF11967.1| UDP-N-acetylmuramate [Chlorobaculum parvum NCIB 8327]
          Length = 474

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 123/381 (32%), Gaps = 35/381 (9%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           T I + G+ GKTTT  +    L +       +                  +  F + E  
Sbjct: 106 TSIVVAGTHGKTTTTSLAAWLLEAGGFLPGFLIGGIPENFGDGCRPSGLSEPGFFVTEGD 165

Query: 169 M--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
              S   + R      RP IA+I  +   H   F  +++I  +   +   +  +G + +N
Sbjct: 166 EYDSAFFDKRSKFLHYRPDIAIINNVEFDHADIFDSLDDIKKSFCLLVNLVPSSGLLIVN 225

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
            DD     + AK+       + +FG +  AD+        +E +   V   G++M  V  
Sbjct: 226 GDDPNSMEVAAKAF----CRVETFGMNGTADWTATDITTDAESTVFTVVHNGEAMGRVSV 281

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
                   N++  L   +       +           +   +R            + E +
Sbjct: 282 P--LFGNYNVMNALAATAAAIRAGVSFESITKGLAKFKRPKRRMELVGEYAGGVTLIEDF 339

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             +P +++  +     I+ H  GRRI    +          F  +L E     +   V +
Sbjct: 340 AHHPTAVRLTLGA---IAEHYPGRRIVACFEPRSNTTTRNIFQHELTECFDDAS---VVV 393

Query: 407 SG--------------FHVLALKDALPRSIHVHYSET---MDGLFLFIQSSLVDGD-VVV 448
            G                     +   +   V  +      + +  FI++    GD VV+
Sbjct: 394 LGRVNRPDRYAPEKRLDAAQLCHELEAKGKRVFAAGDDDYPNDIVQFIKAEQQPGDVVVL 453

Query: 449 VKSSNSCGFYRLINLLLEEFP 469
           +  SN   F  L  LL E F 
Sbjct: 454 L--SNGS-FNGLKTLLAESFE 471


>gi|16800714|ref|NP_470982.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria innocua Clip11262]
 gi|24212046|sp|Q92BA4|MURC_LISIN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|16414133|emb|CAC96877.1| murC [Listeria innocua Clip11262]
 gi|313623565|gb|EFR93744.1| UDP-N-acetylmuramate--alanine ligase [Listeria innocua FSL J1-023]
          Length = 447

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 23/139 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L++PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERANELNLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D  +   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------DAKYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAK 210
           I   H   F  ++++ +A 
Sbjct: 171 IDWDHPDYFKSVDDVFNAF 189


>gi|260772232|ref|ZP_05881148.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           metschnikovii CIP 69.14]
 gi|260611371|gb|EEX36574.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           metschnikovii CIP 69.14]
          Length = 346

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 16/119 (13%)

Query: 1   MNPL-WTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFI 57
           M  +  T  DL     G   G      V+ ++ +D       +  F      +     + 
Sbjct: 1   MTMMTLTLADLATITGGTLYG-DANVKVSAVAPMD--RAKEGDVTFL----SNT---KYA 50

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            H     A +V+V         S    V  V D   A  K+A A     K  ++ I  S
Sbjct: 51  KHLKLCQASVVMVKESERELCPSN---VLVVADPYIAFAKVAQALDKTPKPALVGIAPS 106


>gi|167032169|ref|YP_001667400.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Pseudomonas putida GB-1]
 gi|189028519|sp|B0KSA9|LPXD_PSEPG RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|166858657|gb|ABY97064.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Pseudomonas putida GB-1]
          Length = 351

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILH 59
           M+   T   L +A+            + G++   +   P +  F A          ++ +
Sbjct: 1   MSVTMTLGQLAEALGATL-KGPEALQITGLAT-LQEAGPGQLSFLANPQYR----KYLDN 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             Q GA L+       A   S +     V D   A  +++     + KA
Sbjct: 55  C-QAGAVLL-----KAADAESFAGNALIVADPYQAYARISHLFDPKPKA 97


>gi|325123476|gb|ADY82999.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-
           diaminopimelate ligase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 457

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 121/421 (28%), Gaps = 40/421 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENSNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+     +   ++ A +ALS F   + R +          +    + +  +P ++ 
Sbjct: 287 NALATIAAAQHVGVTLEQACEALSNFGGVKRRMELLGTVNGIEVY----DDFAHHPTAID 342

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS---GF 409
             +    +               + E    +     H D     +      V      G 
Sbjct: 343 TTLDGARKRLGERRLW------AIIEPRSNTMRMGSHKDGLAHSARLA-DEVIWYQPEGL 395

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
                      S     S ++D +   I +   +GD VV+  SN  GF  L   L+    
Sbjct: 396 DWDLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALK 453

Query: 470 A 470
           A
Sbjct: 454 A 454


>gi|237654100|ref|YP_002890414.1| UDP-N-acetylmuramate [Thauera sp. MZ1T]
 gi|237625347|gb|ACR02037.1| UDP-N-acetylmuramate [Thauera sp. MZ1T]
          Length = 448

 Score = 39.1 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 102/384 (26%), Gaps = 37/384 (9%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-- 153
             LA          ++A+ G+ GKTTT  +L   L     +           GVP     
Sbjct: 93  QWLAEHVLA--GRWVLAVAGTHGKTTTTSLLAWMLEDAGLSP-----SFLVGGVPQNFGV 145

Query: 154 ARMPVDVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           +    +  F + E                  RP  A++  +   H   F+ +  I +   
Sbjct: 146 SARLTESPFFVIEADEYDTAFCDKRSKFVHYRPRTAILNNLEFDHADIFADLGAIETQFH 205

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTI-----YSFGKSKNADFQLRKWKQC 266
            +   +  +G I  N  +   + +  +     ++       ++ G   +    + +    
Sbjct: 206 HLVRTIPASGRIVANAHEDSLKRVIERGCWSELEWFGGDGRWTVGTGADEAEAVFRLDGV 265

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR 326
            +           + +     I       +     I S+                     
Sbjct: 266 EQGRVRMALAGSHNRDNALAAIAAARHVGVTPAQAIASLGRFAGIKRR---------LEL 316

Query: 327 GKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               R       F     +       ++        ++          LG M        
Sbjct: 317 RGTVRGVSVYDDFAHHPTAIALTVGGLRRREPQGRILAVLEPRSNTMKLGIMK------- 369

Query: 387 SFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                L   L+  ++      G    A     P        + +D L   + ++   GD 
Sbjct: 370 ---AQLPASLAEADLVFCHAHGLDWDAAAALAPLGARARTYDRLDALVAAVVAAAQPGDH 426

Query: 447 VVVKSSNSCGFYRLINLLLEEFPA 470
           V+V  SN  GF  +   LL+   A
Sbjct: 427 VLV-MSNG-GFGGVHQKLLDALGA 448


>gi|224071816|ref|XP_002195197.1| PREDICTED: similar to Ankyrin repeat and LEM domain-containing
           protein 2 [Taeniopygia guttata]
          Length = 890

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLEEFP 469
           D L R+  +H  E        ++         ++K S    F       +    + + FP
Sbjct: 135 DILARNERIHVYEDRKEALQAVK---------MIKGSRFKAFTNREDAEKFAKGICDYFP 185


>gi|154174185|ref|YP_001409125.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
 gi|153793058|gb|EAT99621.2| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Campylobacter curvus 525.92]
          Length = 432

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 50/203 (24%)

Query: 30  ISIDSRSIAPQEAFFAIKGPHYDGH-DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGV 88
           ++ +S        F          +  F   AV+KGA L+ +           +I     
Sbjct: 10  VTDNSNECERGCFFV-----QTHANSKFSQDAVKKGAKLIGLEECKKILNIDENI----- 59

Query: 89  DDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH-- 146
                                I+ ITG+ GKTTT   +   L  +    A  G+      
Sbjct: 60  --------------------KIVGITGTNGKTTTAAAIYETLRELGHKCALSGTRGAFIE 99

Query: 147 ---------------IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
                            +    A       + I E+  S     +     ++  + + T 
Sbjct: 100 GERIDEKALTTSAILQTLGYLKAASQRGCKYFIMEV--SSHAIDQKRIESLKFALKIFTN 157

Query: 192 IAPAHLSNFSGIEEIASAKAEIF 214
           +   HL     ++E A  K+  F
Sbjct: 158 LTQDHLDYHKSMQEYARVKSSFF 180


>gi|118098401|ref|XP_415084.2| PREDICTED: similar to KIAA0692 protein [Gallus gallus]
          Length = 889

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLEEFP 469
           D L R+  +H  E        ++         ++K S    F       +    + + FP
Sbjct: 181 DILARNERIHVYEDRKEALQAVK---------MIKGSRFKAFSNREDAEKFAKGICDYFP 231


>gi|251811444|ref|ZP_04825917.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251805034|gb|EES57691.1| conserved hypothetical protein [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 132

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 53  GHDFILHAVQ-KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATII 111
           G+++I    +  G  L++  T           P   ++D    L KLA   RL+ K  ++
Sbjct: 64  GNEYIKKDKEDLG--LIITET--YVPDMKFKTPQLVINDSANTLTKLAEEMRLQYKHPVV 119

Query: 112 AITGSVGKTTTKE 124
           AITGS+GK   + 
Sbjct: 120 AITGSMGKVQLEC 132


>gi|218886060|ref|YP_002435381.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|226711908|sp|B8DP81|MURD_DESVM RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|218757014|gb|ACL07913.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 21/164 (12%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVF-GVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTT 122
           GA  VV          S   P+     D    + ++ +A R      ++A+TG+ GKTTT
Sbjct: 77  GARAVV---PSPGMAVSKLRPLLAQGPDAPEIMAEMELAWRQLDGEPVLAVTGTSGKTTT 133

Query: 123 KEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV---------DFGIFELGMSHLG 173
             +    L +   +         +IG PL+   + V           D  + E+    L 
Sbjct: 134 VSLCAAMLRAQGLSVFLG----GNIGTPLSEYVLSVAHGGADGQGRADVLVIEISSFQL- 188

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
                    RP +A++  I+  HL   + + E   AK  +F  +
Sbjct: 189 ---QACTTFRPRVAMLLNISENHLDYHADMAEYIDAKFRLFRCM 229


>gi|169634924|ref|YP_001708660.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii SDF]
 gi|169153716|emb|CAP02917.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii]
          Length = 457

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVIGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTVNGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAATN--HAQVSRSLDEIIDRIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|148642419|ref|YP_001272932.1| peptide ligase [Methanobrevibacter smithii ATCC 35061]
 gi|148551436|gb|ABQ86564.1| cell wall biosynthesis protein, MurD-like peptide ligase family
           [Methanobrevibacter smithii ATCC 35061]
          Length = 478

 Score = 39.1 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 54/417 (12%), Positives = 124/417 (29%), Gaps = 39/417 (9%)

Query: 66  GLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKT 120
             ++  T           L+ P+  VD +  A          +       + ITG+ GK+
Sbjct: 61  ACLITQTPQDGACDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFELGMSH 171
           TT  ++   L +            +            +     +    +D+ + E+    
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLVIEVSEVQ 180

Query: 172 LGEIRFLTHLV-------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                 + H         +P + VIT IA  H+   + I+E+     ++   +    T+ 
Sbjct: 181 GWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAIGDGVTVL 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD   +L         +  + S   +   D              +  + +       
Sbjct: 241 NYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDN------------GIFYEGKRILENKD 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFT 340
                +H  QN+L  +     L  D++  ++ +  + P   R     +      +     
Sbjct: 289 LPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHENPLIVDDFAHNP 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              ++  A    + A    L  +      R + +     E    S   +I L    S   
Sbjct: 349 DGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNIKLVLSSSNDV 408

Query: 401 ISHV-WLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + H+ ++         + L ++ I  +Y + +              D++++  +   
Sbjct: 409 VDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIGAQGM 465


>gi|330994422|ref|ZP_08318347.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
 gi|329758422|gb|EGG74941.1| UDP-N-acetylmuramate--L-alanine ligase [Gluconacetobacter sp.
           SXCC-1]
          Length = 482

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 81/415 (19%), Positives = 132/415 (31%), Gaps = 48/415 (11%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSL---SIPVFGVDDVLGALNKLAVAARLRSKA 108
           GHD    A   G A +VV +T +      +      +  V  V  A   LA   RLR   
Sbjct: 59  GHD----AANLGNAQVVVTSTAVQRDNPEVVAARARLIPV--VRRA-EMLAELMRLRWS- 110

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             +A+ G+ GKTTT  ++   L + K     I                    D+ + E  
Sbjct: 111 --VAVGGTHGKTTTTSLVAAVLEAAKLDPTVINGGIIE---AYGTNTRMGSGDWMVVEAD 165

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   I V+T + P HL ++   E + +A  +    +   G   L  D
Sbjct: 166 ES-----DGSFLRLPSVITVVTNMDPEHLDHWGTEEAMQAAYDQFVSNIPFYGFAVLCID 220

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ-------SWMEVQLQGKSM 281
               + +  +   L    I ++G S  AD +  K              +        ++ 
Sbjct: 221 HPAVQQMIPR---LSDHRIITYGFSPQADVRAEKVITDKLGATFEVVITNRNRNRSRRAG 277

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
                 +G+H  QN L  + + + +  D  T   A + F   + R  R            
Sbjct: 278 PFRLPMLGHHNVQNALAAIAVGTEMEIDDATIRSAFAAFRGVKRRFTRTGETGG----IT 333

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYN 400
           I + Y  +P  + A +         G G  IAV+         S  +             
Sbjct: 334 IIDDYGHHPVEIAAVLKAA---RQAGAGNVIAVMQPHRYSRLKSLFNEFCTCMNDAGTVI 390

Query: 401 ISHVWLSGF------HVLALKDALPRSIHVHYSE--TMDGLFLFIQSSLVDGDVV 447
           I+ V+ +G          AL + L    H         + L   I +    GD V
Sbjct: 391 IADVYAAGESPIEGIDRDALVEGLRERGHRSVVPLPGPEHLAEMINAIARPGDFV 445


>gi|320527506|ref|ZP_08028686.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solobacterium
           moorei F0204]
 gi|320132063|gb|EFW24613.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Solobacterium
           moorei F0204]
          Length = 436

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 108/350 (30%), Gaps = 49/350 (14%)

Query: 99  AVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTL-ARMP 157
           A       +  I+ ITG+ GK+TT  ++   L    +          +IG+P        
Sbjct: 98  AELFIKHYRDHIVGITGTKGKSTTTSLVAALLKEKYQVC-----LVGNIGIPCFEAIDEM 152

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            D  +   EL    L   R+      P  AV   +   HL ++  +E+   AK+ IF   
Sbjct: 153 EDGAYAALELSCHQLEICRYS-----PKYAVFLNLYEEHLDHYGTMEKYGLAKSHIFTNQ 207

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
            +  TI ++ +   F  L   +  L  K I + G +                        
Sbjct: 208 IQGDTIIMHEEMKDFIKLSINTPYLIGKDITAHGTTLYIPRHELDVSSAR---------- 257

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                     IG H  +N+ +   I + L     + +KA++ F P   R           
Sbjct: 258 ---------LIGEHNYRNLAVAYFIANKLGVSDKSVMKAIASFRPLAHRL---EDLGEHK 305

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               I++S +    S   A+  +       E     ++G M          + ++ +   
Sbjct: 306 EIRFINDSISTIGQSCIQALESI-------ENVDTVLVGGM-----DRGIEYDEVEDYFH 353

Query: 398 LYNISHVWLSGFHVLALKDALPRSI----HVHYSETMDGLFLFIQSSLVD 443
                HV         +   + +       +H  E ++      +     
Sbjct: 354 ARKDVHVIFMYATGKRIYSEMEQKGLLRPGLHQVEDLEEAVRLAKKLTRP 403


>gi|261349377|ref|ZP_05974794.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
 gi|288861741|gb|EFC94039.1| UDP-N-acetylmuramyl tripeptide synthase [Methanobrevibacter smithii
           DSM 2374]
          Length = 478

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 53/417 (12%), Positives = 123/417 (29%), Gaps = 39/417 (9%)

Query: 66  GLVVVNTDMV---ASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA--TIIAITGSVGKT 120
             ++  T           L+ P+  VD +  A          +       + ITG+ GK+
Sbjct: 61  ACLITQTPQDGAWDKAKELNFPLIVVDKIELATAYALKWTVEKFSPDSKNVIITGTNGKS 120

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIG---------VPLTLARMPVDVDFGIFELGMSH 171
           TT  ++   L +            +            +     +    +D+ + E+    
Sbjct: 121 TTSHLIYHILKNTGVHVLTNTDSESEFNTLIDPMVSKLISDEVKNNGKLDYLVIEVSEVQ 180

Query: 172 LGEIRFLTHLV-------RPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                 + H         +P + VIT IA  H+   + I+E+     ++   +    T+ 
Sbjct: 181 GWLGNLMKHHAYLMASAVKPSVGVITNIAMDHIGLVNSIDEVFDEINQVPNAIGDGVTVL 240

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
              DD   +L         +  + S   +   D              +  + +       
Sbjct: 241 NYDDDLVMKLTPKHPFLCSMNNMDSKNPNVYYDN------------GIFYEGKRILENKD 288

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR----GKRYRCALNQGFFT 340
                +H  QN+L  +     L  D++  ++ +  + P   R     +      +     
Sbjct: 289 LPFTSHHFIQNILSAVAACISLNMDIEDIVEGVKSYRPLNRRFSKLHENPLIVDDFAHNP 348

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
              ++  A    + A    L  +      R + +     E    S   +  L    S   
Sbjct: 349 DGIKATIAETRKLLAENQTLYVVCSIRGSRGVEINKLNVEALAESMDDNTKLVLSSSNDV 408

Query: 401 ISHV-WLSGFHVLALKDALPRS-IHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
           + H+ ++         + L ++ I  +Y + +              D++++  +   
Sbjct: 409 VDHLNFVEDEEREIFFEVLNQNNIDYNYFDNLCDCLKDTYKCADANDIILLIGAQGM 465


>gi|163782594|ref|ZP_02177591.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase
           [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882167|gb|EDP75674.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase
           [Hydrogenivirga sp. 128-5-R1-1]
          Length = 324

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 16/105 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDS-RSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
               D+   I G   G      + GIS  S R+       F  +       + I  A+  
Sbjct: 1   MKLGDVTHVIGGELHGDAEVELI-GIS--SPRNPRQGSIVFC-QSE-----EDIGRALAG 51

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           G   +VVN ++             VDDV  AL             
Sbjct: 52  GVSALVVNREVDFPN------YIKVDDVRYALALFLDRFYPEEHP 90


>gi|309779050|ref|ZP_07673817.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
 gi|308922115|gb|EFP67745.1| cyanophycin synthase (L-aspartate-adding) [Ralstonia sp. 5_7_47FAA]
          Length = 855

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  L+S                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHLLASSGLRMGMTGTDGVYIQGQRIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +        + I   E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYISTVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +            +       A  + +  +        
Sbjct: 588 IVQNVAPRGMAVLNAADPMVARMADGCPGSVTFFAHDPSLPTMARHRAQGKRVVFVDGPE 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   E ++    + +  +G      +N + ++     L  D     + L+ F    
Sbjct: 648 IVVAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWALGIDWTVIRRGLATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP +++A  + ++ +      R + + G     G+ 
Sbjct: 708 ATAPGRFNLFDYKGATLIAD-YGHNPDAIQALCNAVATMPAQ--RRMVVISGA----GDR 760

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                    ++L       V L           G  +  L++ L  +      E + G  
Sbjct: 761 RDEDIRKQTQILGGV-FDDVVLYEDQCQRGRADGEVLALLREGLQGASRTSRVEEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                    L  GD+ ++
Sbjct: 820 LAIDTALGRLQPGDLCLI 837


>gi|126660928|ref|ZP_01732018.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. CCY0110]
 gi|126617785|gb|EAZ88564.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Cyanothece
           sp. CCY0110]
          Length = 458

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 114/417 (27%), Gaps = 46/417 (11%)

Query: 66  GLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSK-ATIIAITGSVGKTTTKE 124
            L+VV+  +   I  L        D +G L +LA      S    I    G    T    
Sbjct: 67  KLIVVSPGVPWDIPFLIKARNQKIDTIGEL-ELAWRYLQSSPWVGITGTNGKTTTTALVA 125

Query: 125 MLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRP 184
            +         +   IG     + +         + D+ I E+           +  + P
Sbjct: 126 AIFQGAKLNAPSCGNIGYAACELALSQFNKDNTGNYDWIIAEISSYQ----CESSQELSP 181

Query: 185 HIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGI 244
            I + TT    HL+    +E   + KA +    E          +     L         
Sbjct: 182 KIGLWTTFTTDHLNRHKTLENYYAIKASLLYRSEYQI------FNGDDPYLHQAGLHQWA 235

Query: 245 KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVS 304
              ++  K K             + +W+    +      +    G+H  QN+LM +    
Sbjct: 236 DAYWTTIKGKENLLCDSSKGVYIQDNWVVAFDELILPLNLFKMPGFHNQQNLLMAIAAAR 295

Query: 305 ILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQIS 364
           +   +       ++ F        R            I++S   N  + +  +  +    
Sbjct: 296 LAGIEKGAIASVIATFTGV---PHRLEYITTIDGIDFINDSKATNYDAAEVGLLSVQY-- 350

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIH- 423
                  I + G   + G+ ++         +    +  V L G         L    + 
Sbjct: 351 -----PTILIAGGEEKEGDDNKW-----ITQIKSKAV-KVLLIGEAAENFAKRLHDCDYH 399

Query: 424 -VHYSETMDGLFLF---IQSSLVDGDVVVV---KSS---------NSCGFYRLINLL 464
                ETMD        +   L    VV++    +S             F  L   L
Sbjct: 400 DYEIIETMDKAIERSLILGRELKAK-VVLLSPACASFDQYQSFEHRGDHFRELCQQL 455


>gi|161525194|ref|YP_001580206.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189350067|ref|YP_001945695.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
 gi|226703287|sp|A9ACL8|RLME_BURM1 RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|160342623|gb|ABX15709.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia multivorans
           ATCC 17616]
 gi|189334089|dbj|BAG43159.1| cell division protein methyltransferase [Burkholderia multivorans
           ATCC 17616]
          Length = 220

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-SGFHVLALKDA 417
            L  +          + GD  E     +  H  L  VL    +  V      ++  +  A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE----DEVLH-QLEAVLEGRTVDLVISDMAPNLSGVASA 144

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              +  + +   +     F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 145 --DAARIEHVCDL--ALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|319941790|ref|ZP_08016112.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
 gi|319804723|gb|EFW01590.1| UDP-N-acetylmuramate-L-alanine ligase [Sutterella wadsworthensis
           3_1_45B]
          Length = 465

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 77/410 (18%), Positives = 132/410 (32%), Gaps = 51/410 (12%)

Query: 63  KGAGLVVVNTDMVASIGS------LSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           +GA  V+V++ + A          L IPV         +  LA   RLR     IAI G+
Sbjct: 63  RGADAVIVSSAVKADNPEVTAARELDIPVV----PRAVM--LAELMRLRRG---IAIAGA 113

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
            GKTTT  +    L++       +     +            +   G  E  ++   E  
Sbjct: 114 HGKTTTTSLTASLLAAGGLDPTFVIGGKLN--------SAGANARLGTGEFLVAEADESD 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
                + P IA +T I   H+  +    E++ SA  +    L   G   L  DD     +
Sbjct: 166 ASFLNLTPVIAAVTNIDEDHMDTYGHDFEKLKSAFVDFLGRLPFYGVAVLCMDDDNVRSI 225

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV---QLQGKSMEVVHHGIGYHM 292
           + +     I      G   + D  +R     ++ + M     +     + VV +  G H 
Sbjct: 226 RPRVTKPVI------GYGLSHDATVRAIDVTADGTRMRFTVLRPDHPPLPVVLNLPGVHN 279

Query: 293 AQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG---FFTLIDESYNAN 349
            +N L  + I ++     +   + L+ F     R  ++     Q      T      +  
Sbjct: 280 VRNALAAVAIATLAGVKDEDIKRGLAEFKGVGRRFAQWGDIPIQDADGRITGTFTLIDDY 339

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS-- 407
                   + L+ +     GRRI V             F+  +     L ++  V L+  
Sbjct: 340 GHHPHEMAATLAAVRGAWPGRRIVVAFQPHRYTRTRDCFNDFVK---VLEDVDGVVLANV 396

Query: 408 ---------GFHVLALKDALPRSIHVHYSETMDGLFLFI-QSSLVDGDVV 447
                    G     L +A+  S                 +S +  GDVV
Sbjct: 397 YPAGEAPIPGADSHHLAEAIKASGRSEPVVVDVDQVPDAVRSLVEPGDVV 446


>gi|300788099|ref|YP_003768390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
 gi|299797613|gb|ADJ47988.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Amycolatopsis
           mediterranei U32]
          Length = 469

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 104/363 (28%), Gaps = 36/363 (9%)

Query: 97  KLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +LA           + + +TG+ GKTTT  ML   L++        G+          L 
Sbjct: 94  ELAWRVGRLREHPPSWLVVTGTNGKTTTVGMLESILNAAGSNAVACGNIGY-----AALD 148

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +    D    EL    L     L     P  A +  +A  H+     ++E A+AK  ++
Sbjct: 149 AVRAGYDVLAVELSSFQLHWSSTLA----PDAAAVLNLAEDHIDWHGSMDEYAAAKGRVY 204

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
               +      N DD +   + A+    G   +     +  A           +++++  
Sbjct: 205 ---TRAKVAVHNADDDWSTRIAAEHAPEGTPRVGFQLDTPRAGELGVVEDLLVDRAFVAD 261

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                        +      N+   L   ++  A   +           +    R     
Sbjct: 262 PENSAEALATLADVRPAGPHNVANALAAAALARAHGVSPDAVAKGLREYQPAPHRAVEVA 321

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
                  +++S   NP +   ++   + I     G+           G         +A 
Sbjct: 322 EVAGVRYVNDSKATNPHAAAGSLRAHASIVWIAGGQLK---------GASVDELVSSIAG 372

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDV 446
            L       V L G     +  A+ R        ++                +    GDV
Sbjct: 373 RLR-----GVVLLGVDSPVIAAAVARHAPDVPVNSLRPGDDEPMTAAVSAASAMARPGDV 427

Query: 447 VVV 449
           V++
Sbjct: 428 VLL 430


>gi|297725235|ref|NP_001174981.1| Os06g0700650 [Oryza sativa Japonica Group]
 gi|255677368|dbj|BAH93709.1| Os06g0700650 [Oryza sativa Japonica Group]
          Length = 614

 Score = 39.1 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 59/290 (20%), Gaps = 17/290 (5%)

Query: 86  FGVDDVLGALNKLAVAARLRSKATII--AITGSVGKTTTKEMLTIALSSIKKTYACIGSY 143
             V+ +   + KLA+     +   +I  A+   VG      M ++ L   K +       
Sbjct: 196 IIVNIIFSVITKLAIVGLAFAGHPLIWAAVLADVGTCLLVIMYSMLLLREKDSRKAKKCA 255

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
            +H G P                 G+SH         +V    + +   A     +    
Sbjct: 256 ASHHGSPKKCCSSSHHGSHAKKNHGVSHHCSDGPCKSMVSCKESSVAKNACHDHHHEHNH 315

Query: 204 EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKW 263
            E  + K    +      +   +        L    HA      +    S   D +    
Sbjct: 316 HEEPAHKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHDTKKHDC 375

Query: 264 KQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLG---------------IVSILTA 308
                 +  E                 H      + L                       
Sbjct: 376 HGHEHSTCKEELNALPPTNDHACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHCDEPIG 435

Query: 309 DVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                  A                             ++ +   ++    
Sbjct: 436 SHCADKHACHDHEQVHEHHCCDEQQTPHTADLHPCHDHDHDNLEVEEVKD 485


>gi|317014422|gb|ADU81858.1| hypothetical protein HPGAM_05335 [Helicobacter pylori Gambia94/24]
          Length = 339

 Score = 38.7 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFAA-----KD-HALIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDKDVAWIKLKDIEHSLNHLFKF 91


>gi|311108149|ref|YP_003981002.1| methyltransferase [Achromobacter xylosoxidans A8]
 gi|310762838|gb|ADP18287.1| FtsJ-like methyltransferase family protein [Achromobacter
           xylosoxidans A8]
          Length = 210

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 374 VLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMD 431
           V G     G+         L +++    +  V         L    +  S  + +    +
Sbjct: 92  VAGVEFIQGDFRDDEVLKQLEDMVGSRAVDLVIS--DMAPNLSGVGIADSARIQHV--CE 147

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               F  + L    V++VK+ +  GF +++    + F 
Sbjct: 148 LAMEFSCAHLKPNGVLIVKAFHGSGFSQIVESFKQRFK 185


>gi|284928909|ref|YP_003421431.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [cyanobacterium
           UCYN-A]
 gi|284809368|gb|ADB95073.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [cyanobacterium
           UCYN-A]
          Length = 418

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 78/280 (27%), Gaps = 28/280 (10%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            + D+ I E+           +  +RP I + T+  P HLS    +    S KA + +  
Sbjct: 159 PNYDWIITEVSSYQ----CESSQTIRPTIGIWTSFTPDHLSRHKTLHNYYSIKASLLKNC 214

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
           +                L   S        ++  K K             +  W+    +
Sbjct: 215 KYQILNN------DDNYLHTISSHSWPNAYWTTIKGKEDLPCDPIKGVYVQDGWIVAFGE 268

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                 +    G H  QN+LM +    I   D      A+  F     R           
Sbjct: 269 LMFPINLFKVAGLHNQQNLLMAVAAAKIAGIDKKDISLAVENFDGVPHR----------L 318

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
            + +  +       S        +      E   I + G   + G  S+         L 
Sbjct: 319 EYVVSIDDIQFINDSKATNYDAAAMGLISVESPAILIAGGQSKEGNDSEWI------KLI 372

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHY--SETMDGLFL 435
              +S V L G     + + L    + +Y   E MD    
Sbjct: 373 KSQVSKVLLIGESASFIAERLESFSYYNYEIVEEMDVAVR 412


>gi|195589099|ref|XP_002084293.1| LanB2 [Drosophila simulans]
 gi|194196302|gb|EDX09878.1| LanB2 [Drosophila simulans]
          Length = 1575

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/334 (8%), Positives = 57/334 (17%), Gaps = 15/334 (4%)

Query: 94  ALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147
           A++ +AV AR +        +  TG  G+ T                      +      
Sbjct: 289 AISDIAVGARCKCNGHASKCVPSTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS 348

Query: 148 --GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                        +          +         H +                NF   ++
Sbjct: 349 TSTEVNECKACNCNGLADKCFFDANLFNRTGHGGHCLDCRENRDGPNCERCKENFYMRDD 408

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                        ++     +        +            Y FG              
Sbjct: 409 GYCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDTGGS 468

Query: 266 CSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  + +      +                                           
Sbjct: 469 HQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKTNRFGCTPCFCYGHTSECMTAPG 528

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     N+          N     +K      S  +       +        +G+ 
Sbjct: 529 YSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGDQ 588

Query: 385 SQSFHIDL------AEVLSLYNISHVWLSGFHVL 412
             S++ DL         ++   +S V L G    
Sbjct: 589 RASYNRDLKFKLQLVGQVANTGVSDVILEGAGSR 622


>gi|329901110|ref|ZP_08272726.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549209|gb|EGF33797.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 501

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 60/375 (16%), Positives = 108/375 (28%), Gaps = 36/375 (9%)

Query: 94  ALNKLAVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
               LA     R     +IAITG+ GKTT   +    L         +    +   + + 
Sbjct: 108 FAQALAALREERGYAPKLIAITGTNGKTTVTSLTG-LLCERAGLSVQVAGNISPSALDVL 166

Query: 153 LARMPVDV--DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
              +  D      + EL    L         ++  +A +  I   HL     +    + K
Sbjct: 167 RQCLDSDSLPQAWVLELSSFQLHTTH----SLQADVATVLNITQDHLDWHGDMACYVADK 222

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS---FGKSKNADFQLRKWKQCS 267
           A IF           +                G     S   FG       Q       +
Sbjct: 223 ARIFGTDTIRVLNRDDAAVMQLASTGTAPVTFGSDEALSPDCFGLLNENGMQWLAVAIEA 282

Query: 268 EQSWMEVQL----------QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           E      +           +           G H A N L  L +   +   +   +  L
Sbjct: 283 EAEKKPTKRGPAEVRAVSSKRLMPADALKIRGQHNALNALAALALCRAIGLPLAPLLHGL 342

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
             +H       R          T  D+S   N  +    ++ L+ +    +G+ + + G 
Sbjct: 343 RDYHG---EPHRVELVTTLAGVTYFDDSKGTNVGAT---VAALTGLGLQQQGKLVLIAG- 395

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSI---HVHYSETMDGLF 434
               G+        LA  ++  ++  V L G    A++ AL   I    +    +++   
Sbjct: 396 ----GDGKGQDFTPLAAPVAR-HVRAVLLIGKDADAIRAALAGHIGQVELLDCASLEQAV 450

Query: 435 LFIQSSLVDGDVVVV 449
               +    GD V++
Sbjct: 451 ERAAALAQAGDAVLL 465


>gi|295677139|ref|YP_003605663.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
 gi|295436982|gb|ADG16152.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia sp.
           CCGE1002]
          Length = 220

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E      S  + L E++    +  V         L   A
Sbjct: 90  ALDILPMEPVADVHFIQGDFRE-----DSVLVQLEELVGARQVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           +  +  + +   +     F QS L     ++VK  +  G+ +++     +F  +
Sbjct: 143 IADAARIEHLCDL--ALEFAQSHLKPDGALLVKCFHGSGYSQIVEKFKRQFKVV 194


>gi|254832007|ref|ZP_05236662.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           10403S]
          Length = 447

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 114/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D  +   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------DAKYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  + +          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +     L  F   + R             +         +             V++   P
Sbjct: 283 EDVKNELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|260558074|ref|ZP_05830285.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|260408428|gb|EEX01735.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter baumannii ATCC 19606]
 gi|322506212|gb|ADX01666.1| L-alanyl-gamma-D- glutamyl-meso- diaminopimelate ligase
           (UDP-N-acetylmuramate) [Acinetobacter baumannii 1656-2]
          Length = 457

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 58/419 (13%), Positives = 122/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       + + E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFVVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++      EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNVVGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK---RYRCALNQGFFTLIDESYNANPA 351
           N L T+     +   ++ A +ALS F   + R +             F     + +    
Sbjct: 287 NALATIAAAQHVGVSLEKACEALSNFGGVKRRMELLGTINGIEVYDDFAHHPTAIDTTLD 346

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHV 411
             +  +      +          +G   +    S     ++        +         +
Sbjct: 347 GARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLADEVIWY-QPEGLDW------DL 399

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
             + +A     H   S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 400 QPVIEAATN--HAQVSRSLDEIIDRIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|222097903|ref|YP_002531960.1| folylpolyglutamate synthase [Bacillus cereus Q1]
 gi|221241961|gb|ACM14671.1| folylpolyglutamate synthase [Bacillus cereus Q1]
          Length = 407

 Score = 38.7 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 72/290 (24%), Gaps = 26/290 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T+++ P + +IT I   H+          + +           +        
Sbjct: 121 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKA-----GIIKSGVPVITGV 175

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E        +  +   +  +  N    L K      + +          +V     G 
Sbjct: 176 QDEEALQVIQKVAKENQANLYEMGNHFTSLHKQSSEDGEQFDFTCPFASFEDVRITMKGS 235

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  + L  V  +   +   I+   +    +      R    Q    +I +  +   
Sbjct: 236 HQVGNAALALMAVMYVKIYLSFLIEEEEIRTGLQEAYWVGRFEKLQSNPDIIIDGAHNPE 295

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------LSLYNIS 402
                  +V S             LGD        +  H  + ++         + +   
Sbjct: 296 GIESLVKTVESHYKDKNVIVLFTALGD--------KQLHNMVGQLESIADEIIFTTFAFD 347

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               +G      K+           +            L + DV ++  S
Sbjct: 348 RAISAGELASYAKEESK-----LVFDNWKEAIDTKVEMLGENDVFIITGS 392


>gi|330816267|ref|YP_004359972.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
 gi|327368660|gb|AEA60016.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia gladioli
           BSR3]
          Length = 220

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 10/114 (8%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD-A 417
            L  +          + GD  E           L +VL    +  V         L   A
Sbjct: 90  ALDMLPMEPIADVHFIQGDFRE-----DEVLRQLEDVLEGRAVDLVIS--DMAPNLSGVA 142

Query: 418 LPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           L  +  + +   +     F Q+ L     ++VK  +  G+ +++     +F  +
Sbjct: 143 LADAARIEHVCDL--ALEFSQNHLKPDGALLVKCFHGSGYSQIVEKFKHQFRTV 194


>gi|219682144|ref|YP_002468528.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|254765988|sp|B8D7B8|MURC_BUCAT RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|219621877|gb|ACL30033.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 140/414 (33%), Gaps = 46/414 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI   ++     +  N   + +    +IP+         + ++ ++         IA++
Sbjct: 79  DFI---IKS--SAISSNNKEILAAKKRNIPILL----RAEMIEILMSF-----KKGIAVS 124

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+                 N  +   +          + I E   S    
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLD---PTVINGGLIKSINSYAKLGSSSYFITEADES---- 177

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P+I ++T I   H+ ++   +       + F    K  T++          
Sbjct: 178 -DASFLYLNPNIIIVTNIESDHIDHY---DNSFKKLKQTFLTFLKKITLYGTAIVCIDNN 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMA 293
                       I ++G +KNAD ++  +KQ +    +  +    K + ++ +  G H A
Sbjct: 234 AICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNIPGKHNA 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNA 348
            N    + +      + D  I +L  F     R +           ++    ++ + Y  
Sbjct: 294 LNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---- 404
           +P  +   I  +    P+       ++         + + + D  + LS  ++  +    
Sbjct: 354 HPTELSETIKTIRISWPNKN----LIMIFQPHRYTRTYNLYHDFVQTLSQVDVLLILHVY 409

Query: 405 -----WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                ++ G   L+L + + +    +V      + +   +  +L   D+++++ 
Sbjct: 410 SANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQG 463


>gi|187926156|ref|YP_001892501.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|241665644|ref|YP_002984003.1| cyanophycin synthetase [Ralstonia pickettii 12D]
 gi|187727910|gb|ACD29074.1| cyanophycin synthetase [Ralstonia pickettii 12J]
 gi|240867671|gb|ACS65331.1| cyanophycin synthetase [Ralstonia pickettii 12D]
          Length = 855

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 121/378 (32%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKTYAC----------IGSYNNHIGVPLTLAR-- 155
             ++A++G+ GKTTT  ++T  L+S                           P +     
Sbjct: 470 IPVVAVSGTNGKTTTVRLITHLLASSGLRMGMTGTDGVYIQGQRIDTGDCSGPRSARNVL 529

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           +  DVD  +FE      G +R      R  +AV+T +        + I   E++A  K+ 
Sbjct: 530 LHPDVDAAVFETA--RGGLLREGLAFDRCDVAVVTNVGEGDHLGLNYISTVEDLAVLKSV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     +            +  G    A  + +  +        
Sbjct: 588 IVQNVAPRGMAVLNAADPMVARMAEGCPGSVTFFAHDPGLPTLALHRAQGKRVVFVDGPE 647

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   E ++    + +  +G      +N + ++     L  D     + L+ F    
Sbjct: 648 IVAAEGANETRIALADIPLTRNGTIGFQVENAMSSIAAAWALGIDWTVIRRGLATFVNDA 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     +    TLI + Y  NP +++A  + ++ +      R + + G     G+ 
Sbjct: 708 ATAPGRFNLFDYKGATLIAD-YGHNPDAIQALCNAVATMPAQ--RRMVVISGA----GDR 760

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                    ++L       V L           G  +  L++ L  +      + + G  
Sbjct: 761 RDEDIRKQTQILGGV-FDDVVLYEDQCQRGRADGEVLALLREGLQGASRTSRVDEIRGEF 819

Query: 433 -LFLFIQSSLVDGDVVVV 449
                    L  GD+ ++
Sbjct: 820 LAIDTALGRLQPGDLCLI 837


>gi|47097065|ref|ZP_00234636.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|254898227|ref|ZP_05258151.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           J0161]
 gi|254912280|ref|ZP_05262292.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
 gi|254936607|ref|ZP_05268304.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|47014552|gb|EAL05514.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609204|gb|EEW21812.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes F6900]
 gi|293590260|gb|EFF98594.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes J2818]
          Length = 447

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 114/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D  +   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------DAKYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  + +          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +     L  F   + R             +         +             V++   P
Sbjct: 283 EDVKNELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|107022371|ref|YP_620698.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           AU 1054]
 gi|116689318|ref|YP_834941.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           HI2424]
 gi|170732617|ref|YP_001764564.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|206559643|ref|YP_002230404.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
 gi|254245761|ref|ZP_04939082.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|123371703|sp|Q1BXD0|RLME_BURCA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|143459622|sp|A0K6C1|RLME_BURCH RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703285|sp|B1JZE9|RLME_BURCC RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|226703286|sp|B4E5F3|RLME_BURCJ RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|105892560|gb|ABF75725.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           AU 1054]
 gi|116647407|gb|ABK08048.1| 23S rRNA Um-2552 2'-O-methyltransferase [Burkholderia cenocepacia
           HI2424]
 gi|124870537|gb|EAY62253.1| Ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           PC184]
 gi|169815859|gb|ACA90442.1| ribosomal RNA methyltransferase RrmJ/FtsJ [Burkholderia cenocepacia
           MC0-3]
 gi|198035681|emb|CAR51568.1| putative ribosomal RNA large subunit methyltransferase
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 8/113 (7%)

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
            L  +          + GD  E        H  L EVL    +  V      +      +
Sbjct: 90  ALDILPMEPIADVHFLQGDFRE----DDVLH-QLEEVLEGRAVDLVI---SDMAPNLSGV 141

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
             +         D    F Q+ L     ++VK  +  G+ +++    ++F  +
Sbjct: 142 ASADAARIEHLCDLALEFAQNHLKPDGALLVKCFHGSGYSQIVEKFKQQFKVV 194


>gi|295677766|ref|YP_003606290.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           CCGE1002]
 gi|295437609|gb|ADG16779.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Burkholderia sp.
           CCGE1002]
          Length = 512

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSS 440
           G+        LA  +  +    V L G     ++ AL    + +    T++       + 
Sbjct: 410 GDGKGQEFEPLAAPVMRW-CRAVMLIGRDAPQIRAALEHCGVAMTDHATLEEATRAATAI 468

Query: 441 LVDGDVVVV 449
              GD V++
Sbjct: 469 AQPGDAVLL 477


>gi|159902563|ref|YP_001549907.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9211]
 gi|159887739|gb|ABX07953.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9211]
          Length = 476

 Score = 38.7 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 91/300 (30%), Gaps = 28/300 (9%)

Query: 187 AVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT 246
            +IT I   H   +  +E +      + +  +    +  N+D    +     + +     
Sbjct: 179 GIITNIELDHTDYYKDLESLKET---MEKFSKSCKKVLANHDCPNLQ-----NKSNKNIN 230

Query: 247 IYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSI 305
            +S    K  DF          ++  +   +     E+     G H   N +  +    +
Sbjct: 231 WWSTQTIKGVDFSGIPTSINGNETTADFYEKETFLGEITVPLPGLHNLSNAVGAIAACRL 290

Query: 306 LTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDES---YNANPASMKAAISVLSQ 362
                     +L    P   R         +             NA   + +  I+  + 
Sbjct: 291 AGLSFSELKNSLKDIKPPNRRFDFKGQWQGRQIVDDYAHHPSEINATIETARLMINTKTN 350

Query: 363 ISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHVWLSGFHVLA------ 413
             P    R + V          ++    D A+ L   +I   + ++ +G  +++      
Sbjct: 351 WLPKISKRLVVVFQPHRY--TRTKHLIKDFAKSLGKADIVFLAPIYSAGEEMISDVSINS 408

Query: 414 ---LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
              L      +I ++ S  M  L   I+ + +  D+++   + +     L   LLE+   
Sbjct: 409 LFSLIKKEHPNISIYTSTNMKELESIIKKNTIKDDLILFMGAGNINM--LSKKLLEKSKT 466


>gi|313608536|gb|EFR84427.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes FSL
           F2-208]
          Length = 380

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 7   HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 57

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 58  AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 103

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 104 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLSLDIPIIYFG 155

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  +G+          G H   N L  + +       V
Sbjct: 156 FGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLPV 215

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   K L  F   + R             +         +             V++   P
Sbjct: 216 EDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 275

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 276 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 328

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 329 IKEEHTEELLKY------PEAVILFMG 349


>gi|320109140|ref|YP_004184730.1| molybdopterin oxidoreductase [Terriglobus saanensis SP1PR4]
 gi|319927661|gb|ADV84736.1| molybdopterin oxidoreductase [Terriglobus saanensis SP1PR4]
          Length = 758

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 48  GPHYDGHD-----FILHAVQKGAGLVVVN--TDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           G +  G++     FI  A + GA L+V++      A +    IP+    DV  AL  + V
Sbjct: 194 GANIHGNNIHLWPFIEEARRNGARLIVIDPYATRTAKLADWHIPIRPGTDVALALGMMHV 253

Query: 101 AARLRSKATIIAITGSVG 118
             R   + T      + G
Sbjct: 254 ILRGSLENTAYLEACTHG 271


>gi|254455275|ref|ZP_05068704.1| FolC bifunctional protein [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082277|gb|EDZ59703.1| FolC bifunctional protein [Candidatus Pelagibacter sp. HTCC7211]
          Length = 366

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 73/288 (25%), Gaps = 23/288 (7%)

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                    L     +++T+I   HL      E+                 I +    S 
Sbjct: 84  FHRFDATNILKDNLASIVTSIGLDHLDWLPENEQTVEKIIYEKTSTLLNSNIIIAKQSSK 143

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYH 291
                 +       +   F     +           E     ++L   +++         
Sbjct: 144 EITDSIRKTISNNISKKFFHNENYSFTMKENDFFYYEDQLGGIKLPMPNVKG------QF 197

Query: 292 MAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPA 351
             +N+   +  +  +                 +   +       +      +     + +
Sbjct: 198 QLENISTAIATLRAIKDFDIKDEHIKKGITKIKSIARLQEIKSGRLKELTKEHQLFVDGS 257

Query: 352 SMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF-- 409
                  VL++        +  +LG M      +   H +        ++  +       
Sbjct: 258 HNPLGAKVLNEYLESLNCNKHIILGMM------ANKDHNEYMSYFK--DVKTLTTIDIPN 309

Query: 410 -----HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                    LKD L    +++Y E+++     I   + + D++++  S
Sbjct: 310 QPNSIKGKELKDKLNSFKNINYKESIESAIRSIP--VKENDIILITGS 355


>gi|311087110|gb|ADP67190.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087656|gb|ADP67735.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 453

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 140/414 (33%), Gaps = 46/414 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI   ++     +  N   + +    +IP+         + ++ ++         IA++
Sbjct: 48  DFI---IKS--SAISSNNKEILAAKKRNIPILL----RAEMIEILMSF-----KKGIAVS 93

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+                 N  +   +          + I E   S    
Sbjct: 94  GTHGKTTTTSMIADIFIDSGLD---PTVINGGLIKSINSYAKLGSSSYFITEADES---- 146

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P+I ++T I   H+ ++   +       + F    K  T++          
Sbjct: 147 -DASFLYLNPNIIIVTNIESDHIDHY---DNSFKKLKQTFLIFLKKITLYGTAIVCIDNN 202

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMA 293
                       I ++G +KNAD ++  +KQ +    +  +    K + ++ +  G H A
Sbjct: 203 AICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNIPGKHNA 262

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNA 348
            N    + +      + D  I +L  F     R +           ++    ++ + Y  
Sbjct: 263 LNAAAAIALAIHEGINNDLMIASLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGH 322

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---- 404
           +P  +   I  +    P+       ++         + + + D  + LS  ++  +    
Sbjct: 323 HPTELSETIKTIRISWPNKN----LIMIFQPHRYTRTYNLYHDFVQTLSQVDVLLILHVY 378

Query: 405 -----WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                ++ G   L+L + + +    +V      + +   +  +L   D+++++ 
Sbjct: 379 SANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQG 432


>gi|221632549|ref|YP_002521770.1| folylpolyglutamate synthase [Thermomicrobium roseum DSM 5159]
 gi|221157143|gb|ACM06270.1| folylpolyglutamate synthase [Thermomicrobium roseum DSM 5159]
          Length = 484

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 9/76 (11%), Positives = 18/76 (23%), Gaps = 10/76 (13%)

Query: 387 SFHIDL-AEVLSLYNISHVWLSGFHV---------LALKDALPRSIHVHYSETMDGLFLF 436
             H  L    +   ++  V L+                     +  H    +        
Sbjct: 363 EGHDALTMATMLAKSVDMVVLTTPRAFLRTAADPVELAAACQAQGTHAVTVDDPAEALAL 422

Query: 437 IQSSLVDGDVVVVKSS 452
           +       D++VV  S
Sbjct: 423 VLEMAQPNDLIVVTGS 438


>gi|297380214|gb|ADI35101.1| Hypothetical protein HPV225_1049 [Helicobacter pylori v225d]
          Length = 306

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 36  SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGAL 95
            +     F A      D H  I  A++ GA  ++        +    +    + D+  +L
Sbjct: 5   KVQKGSLFVA-----KD-HALIPKALELGAYGILY--AGEYPLSDRDVAWIKLKDIEHSL 56

Query: 96  NKLAVA 101
           N L   
Sbjct: 57  NHLFKF 62


>gi|283458376|ref|YP_003363000.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
 gi|283134415|dbj|BAI65180.1| UDP-N-acetylmuramate-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 499

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 123/356 (34%), Gaps = 34/356 (9%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GK+TT  M+++    +    +                         + E   
Sbjct: 130 VVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTVIAGRGMNAHLGAQGPGSIFVAEADE 189

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    +R+     RP IAV+T + P HL  +   E +  A       L   G +    DD
Sbjct: 190 SDGSFVRY-----RPAIAVVTNVEPDHLDFYETDERVFEAFNRFVGSLAPNGVVVTCADD 244

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------- 281
           +    L A+S A G+  + ++G+S +AD ++ +       S   +    +          
Sbjct: 245 AGAADLAARSRAAGVPVV-TYGESADADLRISEITSAGSSSSSHLSWSFECHGVRYEGEQ 303

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
           ++     G H   N         I   +     +AL+ F   + R               
Sbjct: 304 DLALKVPGIHNQLNASAAFASALISGYEAADIARALAEFVGADRRFTLRGEVAG----VK 359

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI 401
           + + Y  +P  +  A+     ++   +G  + V+     +   ++ F  + A+ LS+ + 
Sbjct: 360 VFDDYAHHPTEVFRALETGRTVA---DGHNLYVIFQPH-LFSRTREFAKEFAQALSMADR 415

Query: 402 SHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           +HV            G     +  A    +      T +     I +   DGD+V+
Sbjct: 416 AHVLDIYPARELPIEGVTSELITGAGFSEVR---YATAEDAIEDIVTCAQDGDIVM 468


>gi|313633042|gb|EFR99962.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria seeligeri FSL
           N1-067]
          Length = 407

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 63/391 (16%), Positives = 125/391 (31%), Gaps = 59/391 (15%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L IPV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 34  HEEIERAMELGIPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 84

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 85  AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 130

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 131 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------VELRKLTLDIPIIYFG 182

Query: 252 KSKNADFQLRKWKQCSEQSWME-VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +                G H   N L  + +       V
Sbjct: 183 FGEENEFQAKNVIKETTGTRFDVYHRDEFLASFEIPAYGDHNVLNALSVIALCDYEGLPV 242

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           D     L  F   +      R ++      ++ + Y  +P+ ++A ++   Q  P  +  
Sbjct: 243 DAVKAELKTFEGVKR-----RFSITDKGNQVLVDDYAHHPSEIRATVNAARQKYPDKK-- 295

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL----------SGFHVLALKDALPR 420
              V          +++F    A+ L+L     V+L          +G   +A      +
Sbjct: 296 --IVAVFQPHTFTRTRTFLQGFADSLNLA--DEVYLCDIFGSAREKTGNLTIADLAHKTK 351

Query: 421 SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             H+   E  + L  +         V++   
Sbjct: 352 GNHIIKEEHTEELLKY------PDAVILFMG 376


>gi|75907016|ref|YP_321312.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Anabaena
           variabilis ATCC 29413]
 gi|122063235|sp|Q3MF19|MURD_ANAVT RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|75700741|gb|ABA20417.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Anabaena
           variabilis ATCC 29413]
          Length = 455

 Score = 38.7 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 65/386 (16%), Positives = 117/386 (30%), Gaps = 45/386 (11%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLT 152
             + ++ +A R       + ITG+ GKTTT  ++     +             +IG    
Sbjct: 90  ETIGEMELAWRHLKSLPWVGITGTNGKTTTTALIAAIFQAAGFDAP----ACGNIGYAAC 145

Query: 153 LARMPVD-VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
              +     D+ I E+    +      +  + PHI++ TT  P HL+    +E     KA
Sbjct: 146 EVALAATPPDWIIGEMSSYQI----ESSLTLAPHISIWTTFTPDHLARHKTLENYYDIKA 201

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC-SEQS 270
           ++     ++     N DD++   + A        T          D           EQ 
Sbjct: 202 KLL---RQSHLQVFNGDDAYLSKIGASHWPDAYWTSVKGKDYLIGDKGFYIEDGWVVEQL 258

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                 Q          +G H  QN+LM +    +     +   KA+  F        R 
Sbjct: 259 QPNSSPQRIVAAEALRMVGAHNLQNLLMAVAAARLADIPPNAIDKAVREFPGV---AHRL 315

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
                      I++S   N  + +  ++ +       +   I + G   + G+ +     
Sbjct: 316 EHICTWQGIDFINDSKATNYDAAEVGLASV-------KSPVILIAGGEAKPGDDAAWLAK 368

Query: 391 DLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGD--V 446
              +       S V L G    A    L      +    ETM+                V
Sbjct: 369 IQGQT------SAVLLIGNAAPAFAQRLQEIGYSNYEIVETMEQAVRRSLDLAKHHQAPV 422

Query: 447 VVV---KSS---------NSCGFYRL 460
           V++    +S             F +L
Sbjct: 423 VLLSPACASFDQYPNFEARGDHFRQL 448


>gi|78044616|ref|YP_360887.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|109892698|sp|Q3AAE7|MURC_CARHZ RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|77996731|gb|ABB15630.1| UDP-N-acetylmuramate--alanine ligase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 464

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 113/350 (32%), Gaps = 34/350 (9%)

Query: 103 RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
           RL  +   IA+ G+ GKTTT  M+   L                  V   +  +  +   
Sbjct: 111 RLMQEKKGIAVAGTHGKTTTSSMIAYVLEKEGFDPVIA--------VGGEIVDLGYNAKA 162

Query: 163 GIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGT 222
           G  E  ++   E       + P+ AVIT I   HL  +   EEI  A  +  + +   G 
Sbjct: 163 GQGEYMVAEADESDGSFLKLLPYAAVITNIEADHLDYYQSFEEIKKAFKKFADNIRPEGF 222

Query: 223 IFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSME 282
               +D+     +            +S G            ++ ++             E
Sbjct: 223 GVFCWDNLQVREMLKGYKKRKFTYGFSPGSDFMLRDYR---EEQNQLVANIYYKNTLEGE 279

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
           +     G H   N      ++  +        + L  F+  + R +     L +    LI
Sbjct: 280 LRLKVPGKHNILNAAAATAVLRNIGLSFKAISERLLEFNGAKRRFQ----ILGERNGALI 335

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNIS 402
            + Y  +P  ++A +          +   + V          +  F+ + A VL      
Sbjct: 336 VDDYAHHPTEVEATLRAAKLYK---DRDVLVVFQPHRY--TRTHFFYKEFARVLVDA--E 388

Query: 403 HVWLSGFHVLA-----------LKDALPR-SIHVHYSETMDGLFLFIQSS 440
            V L+G +              + + + +   +  Y E++D ++ +++ +
Sbjct: 389 KVVLTGIYSAGEKPIPGVSGEMIAEEMKKLGKNPLYLESLDEVYNYLEQN 438


>gi|319955885|ref|YP_004167148.1| UDP-N-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418289|gb|ADV45399.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           [Nitratifractor salsuginis DSM 16511]
          Length = 434

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/304 (9%), Positives = 80/304 (26%), Gaps = 39/304 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
             ++ + E+  SH  +       +   + V T +   HL     +EE    K+       
Sbjct: 128 GAEYFVMEV-SSHAIDQDR-IEGLDFALKVHTNVTRDHLDYHGTLEEYRRVKSLF----- 180

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
                F +         + KS     K  Y++G  + A F++  +   +  S +    Q 
Sbjct: 181 -----FSDDSLKLLNKDEIKSITFNPKNAYTYGVEEPATFKVLAYSLQNGISAVVQFRQE 235

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
           +     +    +++   +     +  +    +      +  F    GR +          
Sbjct: 236 QEAFFSNMMGLFNLYNLLAAIASVKLLTDRPLAEICDVVENFGGVSGRMEVVSAKPTIIV 295

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
                +              +   +    +   + V G     G             ++ 
Sbjct: 296 DFAHTDD------------GMYRVLDSLKDKDLVVVFGA----GGDRDRGKRPRMGAVAG 339

Query: 399 YNISHVWLSGFHVL---------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                ++++  +            +   L     V                L + +++++
Sbjct: 340 RFAKKIYVTSDNPRSEDPEAIIAEILQGLKGKEGVRAIVDRREAIERAIDELQEDEILLI 399

Query: 450 --KS 451
             K 
Sbjct: 400 LGKG 403


>gi|229198586|ref|ZP_04325288.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
 gi|228584868|gb|EEK42984.1| Folyl-polyglutamate synthetase [Bacillus cereus m1293]
          Length = 434

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 72/290 (24%), Gaps = 26/290 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T+++ P + +IT I   H+          + +           +        
Sbjct: 147 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKA-----GIIKSGVPVITGV 201

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E        +  +   +  +  N    L K      + +          +V     G 
Sbjct: 202 QDEEALQVIQKVAKENHANVYEMGNHFTSLHKQSSEDGEHFDFTCPFASFEDVRISMKGS 261

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  + L  V  +   +   I+   +    +      R    Q    +I +  +   
Sbjct: 262 HQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAYWVGRFEKLQSNPDIIIDGAHNPE 321

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------LSLYNIS 402
                  +V S             LGD        +  H  + ++         + +   
Sbjct: 322 GIESLVKTVESHYKDKNVIVLFTALGD--------KQLHNMVGQLESIADEIIFTTFAFD 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               +G      K+           E            L + DV ++  S
Sbjct: 374 RAISAGELASYAKEESK-----LVFENWKEAIDTKVEMLGENDVFIITGS 418


>gi|195490762|ref|XP_002093277.1| laminin B2 [Drosophila yakuba]
 gi|194179378|gb|EDW92989.1| laminin B2 [Drosophila yakuba]
          Length = 1639

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/335 (7%), Positives = 52/335 (15%), Gaps = 17/335 (5%)

Query: 94  ALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
           A++ +AV AR +        +A TG  G+ T                      +      
Sbjct: 289 AISDIAVGARCKCNGHASKCVASTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS 348

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
            +                     +             +         +     E      
Sbjct: 349 TSTEVNECKACNCNGLAD-KCFFDAALFNRTGHGGHCLDCRENRDGPNCERCKENFYMRD 407

Query: 211 AEIFEGLEKTG------TIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWK 264
                                +        +            Y FG             
Sbjct: 408 DGYCINCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDIGG 467

Query: 265 QCSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPK 323
                   +        +                                          
Sbjct: 468 SQQNTPACDTDTGICFCKDNVEGRRCNECKPGFFNLDKTNRFGCTPCFCYGHTSECMTAP 527

Query: 324 EGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGE 383
                      N+          N     +K      S  +       +        +G+
Sbjct: 528 GYSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGD 587

Query: 384 LSQSFHIDL------AEVLSLYNISHVWLSGFHVL 412
              S++ DL         ++   +S V L G    
Sbjct: 588 QRASYNRDLKFKLQLVGQVANTGVSDVILEGAGSR 622


>gi|4204102|gb|AAD10535.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Streptomyces
           coelicolor A3(2)]
          Length = 221

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 20/88 (22%)

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD--------GLFLFIQSSLVDGDVVV 448
           +   +    L G     +++AL R         +D              +     GD V+
Sbjct: 132 AAKRLRGAVLIGADRALIREALARHAPEVPVVDLDRTDTGAMLQAVQEARRLARPGDTVL 191

Query: 449 V---KSS---------NSCGFYRLINLL 464
           +    +S             F + +  L
Sbjct: 192 LAPACASMDMFTNYNQRGDAFAQAVREL 219


>gi|227875257|ref|ZP_03993399.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
 gi|227844162|gb|EEJ54329.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35243]
          Length = 458

 Score = 38.7 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 106/364 (29%), Gaps = 38/364 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML+    ++    A        + +              + E   
Sbjct: 90  LLAVAGAHGKTTTSAMLS---KALWDVGADPSFAIGGVILEYGTGARLGRGRAFVIEADE 146

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    + +      P + V+T I P HL ++   E    A  +    +   G I    DD
Sbjct: 147 SDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAIVACGDD 201

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA--------DFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    L  + H+      Y FG             + +L       +   M    +    
Sbjct: 202 AGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAGHAEVDLRVMRCHPEQLLF 261

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGF 338
             V           +     + +    +         A            R    L +  
Sbjct: 262 HDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQSLSSFTGTGRRMQFLGEIG 321

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  +P  + A +     ++    G    ++     +   +++F  + A VLS 
Sbjct: 322 GVRIYDDYGHHPTEVAATLGAARDLA----GNGRLLVCFQPHLYSRTKTFASEFATVLSA 377

Query: 399 YNISHVWLSGFHVL-----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                V + G +             A+ D +       +   M      + +    GD++
Sbjct: 378 A--DEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDMYAAGDAVYNLAKPGDLL 433

Query: 448 VVKS 451
           +   
Sbjct: 434 LFLG 437


>gi|297559871|ref|YP_003678845.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296844319|gb|ADH66339.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 483

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 61/360 (16%), Positives = 111/360 (30%), Gaps = 33/360 (9%)

Query: 102 ARLRSKATI-IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDV 160
            RL+    + +A+TG+ GKTTT  ML   L +  +    +G+    +   +         
Sbjct: 117 WRLKPADQVWLAVTGTNGKTTTVRMLEAMLRADGRDALAVGNVGTPVVEAVQPDAGGRFR 176

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           +    EL    L         +RPH A +  IAP HL    G++  A AK  I+      
Sbjct: 177 EVLAVELSSFQLHWSS----SLRPHAATVLNIAPDHLDWHGGLDPYARAKGRIYAPGTLR 232

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                +        L  +        +     +  A           +++++E       
Sbjct: 233 VVNTADAW---SVRLAEEDGDPHTPLVGFRLDTPRAGEVGVVEDLLVDRAFVEDPHSSAE 289

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
                  +      N+   L   ++  +         +     +    R       G   
Sbjct: 290 ELATLSDVRPAAPHNVANALAAAALARSVGVYPGSVRAGLAAFDPEPHRIAFVATAGGVD 349

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            +D+S   NP +  A++     +                  G L  +   DLA + +   
Sbjct: 350 YVDDSKATNPHAAAASLGSYPSVVWIAG-------------GLLKGAEVDDLAAMAADR- 395

Query: 401 ISHVWLSGFHVLALKDALPR---SIHVHYSET--------MDGLFLFIQSSLVDGDVVVV 449
           +    L G     L++AL      + V   E         MD +     S   +GD V++
Sbjct: 396 LRAAVLIGADRARLREALAEHAPGVPVVEVEGPADGDGTVMDAVVAAAASLAEEGDTVLL 455


>gi|284801997|ref|YP_003413862.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284995139|ref|YP_003416907.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
 gi|284057559|gb|ADB68500.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5578]
 gi|284060606|gb|ADB71545.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           08-5923]
          Length = 447

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 115/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                 D  +   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------DAKYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  + +          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           D   K L  F   + R             +         +             V++   P
Sbjct: 283 DDVKKELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|153001274|ref|YP_001366955.1| FolC bifunctional protein [Shewanella baltica OS185]
 gi|151365892|gb|ABS08892.1| FolC bifunctional protein [Shewanella baltica OS185]
          Length = 423

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 17/164 (10%)

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
            +     +++++         A+        R       +++    L+D ++N + A   
Sbjct: 253 PLPNAATVLAVIEQGWPDIAPAIIAEGISTARLTGRLERVSEQPLVLLDVAHNPHAARF- 311

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------G 408
               ++ Q++P   G+R+  L  M +           +  V+    +   +L       G
Sbjct: 312 ----LVQQLAPMVVGKRVFALCGMLK-----DKDIAGVLPVIHPL-VDTWYLVSLHGERG 361

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                L+  L         E +   +  +++ +   DVV+V  S
Sbjct: 362 ASSAMLRKTLAPEASAFEFEGIAEAWSALKAQINPDDVVIVFGS 405


>gi|262341149|ref|YP_003284004.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272486|gb|ACY40394.1| UDP-N-acetylmuramate-L-alanine ligase [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 456

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 113/343 (32%), Gaps = 28/343 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI G+ GKTTT  +L   L S   +        +          +       + E    
Sbjct: 114 IAIGGTHGKTTTCTLLGHILYSAGISVTAFLGGISEN---YKSNIILNGTKIFLVEAD-- 168

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P+IA +T+    H+  +   E +  A       ++K           
Sbjct: 169 ---EFDRSFLYLSPNIACVTSFDQDHVDTYPKKETLKKAYIAFLNRIKKPYKKI------ 219

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
               L  +        IY     K + +      + +E  +           +     G 
Sbjct: 220 ---FLCKEESFPLKNAIYYSVIKKESYYSNHLSIKGNEWYFDFHTPTETWKSLPLPIPGI 276

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H  +N+   L I   L  + +   KAL +F   + R   +  +  +    +  + Y  +P
Sbjct: 277 HNLKNVTAALSISDYLKINQEKVRKALFLFQGIKRRYSIHYLSKKK----IYIDDYAHHP 332

Query: 351 ASMKAAISVLSQISPHGE--GRRIAVLGDMCEMGELSQS---FHIDLAEVLSLYNISHVW 405
             + A I  + +  P+ +  G     L    +  E S +    H+D+  +L +Y    + 
Sbjct: 333 TEINALIHTVKECFPNKKILGIFQPHLFSRTKFFEESFAKSLEHLDILILLDIYPARELP 392

Query: 406 LSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + G +   L + +  S       T+  +   I+      D+++
Sbjct: 393 MKGINSNNLLEKIKMSSKNKEISTLSKVLEKIKE--KHFDIIL 433


>gi|289582210|ref|YP_003480676.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
 gi|289531763|gb|ADD06114.1| dihydropteroate synthase [Natrialba magadii ATCC 43099]
          Length = 840

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/108 (12%), Positives = 24/108 (22%), Gaps = 16/108 (14%)

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG------F 409
              + + +  +       V G M          H ++  V +L     V  +        
Sbjct: 325 CEQLAATLGTYEFDDLHLVFGAMH------DKDHREM--VAALPTPDAVITAEPGLDRAE 376

Query: 410 HVLALKDALPRSIHVHYSETMD--GLFLFIQSSLVDGDVVVVKSSNSC 455
               L      +       T           +     D V+V  S   
Sbjct: 377 DRDVLATVFDDAGTAQVKTTRSVPDALSQALADAGPDDCVLVTGSLFA 424


>gi|157804|gb|AAA28664.1| laminin B2 chain [Drosophila melanogaster]
          Length = 1639

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/334 (8%), Positives = 57/334 (17%), Gaps = 15/334 (4%)

Query: 94  ALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147
           A++ +AV AR +        +  TG  G+ T                      +      
Sbjct: 289 AISDIAVGARCKCNGHASKCVPSTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS 348

Query: 148 --GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                        +          +         H +                NF   ++
Sbjct: 349 TSTEVNECKACNCNGLADKCFFDANLFNRTGHGGHCLDCRENRDGPNCERCKENFYMRDD 408

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                        ++     +        +            Y FG              
Sbjct: 409 GYCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDSGGS 468

Query: 266 CSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  + +      +                                           
Sbjct: 469 HQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKNNRFGCTPCFCYGHTSECMTAPG 528

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     N+          N     +K      S  +       +        +G+ 
Sbjct: 529 YSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGDQ 588

Query: 385 SQSFHIDL------AEVLSLYNISHVWLSGFHVL 412
             S++ DL         ++   +S V L G    
Sbjct: 589 RASYNRDLKFKLQLVGQVANTGVSDVILEGAGSR 622


>gi|17737557|ref|NP_524006.1| laminin B2 [Drosophila melanogaster]
 gi|2506807|sp|P15215|LAMC1_DROME RecName: Full=Laminin subunit gamma-1; AltName: Full=Laminin B2
           chain; Flags: Precursor
 gi|157806|gb|AAA28665.1| laminin B2 chain [Drosophila melanogaster]
 gi|7294908|gb|AAF50238.1| laminin B2 [Drosophila melanogaster]
 gi|60678071|gb|AAX33542.1| LD15803p [Drosophila melanogaster]
          Length = 1639

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 27/334 (8%), Positives = 57/334 (17%), Gaps = 15/334 (4%)

Query: 94  ALNKLAVAARLRSKA---TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHI--- 147
           A++ +AV AR +        +  TG  G+ T                      +      
Sbjct: 289 AISDIAVGARCKCNGHASKCVPSTGMHGERTLVCECRHNTDGPDCDRCLPLYNDLKWKRS 348

Query: 148 --GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
                        +          +         H +                NF   ++
Sbjct: 349 TSTEVNECKACNCNGLADKCFFDANLFNRTGHGGHCLDCRENRDGPNCERCKENFYMRDD 408

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                        ++     +        +            Y FG              
Sbjct: 409 GYCVNCACDPVGSRSLQCNSHGKCQCKPGVTGDKCDRCDNNYYQFGPHGCQQCGCDSGGS 468

Query: 266 CSEQSWMEVQLQGKSMEVVHH-GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
                  + +      +                                           
Sbjct: 469 HQNTPACDTETGICFCKENVEGRRCNECKPGFFNLDKNNRFGCTPCFCYGHTSECMTAPG 528

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                     N+          N     +K      S  +       +        +G+ 
Sbjct: 529 YSIVSVTSNFNKFKERWTAADLNQREVDIKYNQYSRSIGTTAQGNEHVYFQAPDRFLGDQ 588

Query: 385 SQSFHIDL------AEVLSLYNISHVWLSGFHVL 412
             S++ DL         ++   +S V L G    
Sbjct: 589 RASYNRDLKFKLQLVGQVANTGVSDVILEGAGSR 622


>gi|47094075|ref|ZP_00231802.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|47017551|gb|EAL08357.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes str.
           4b H7858]
 gi|328464970|gb|EGF36249.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           1816]
          Length = 447

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  +G+          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPTYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   K L  F   + R             +         +             V++   P
Sbjct: 283 EDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|154686827|ref|YP_001421988.1| GTP-binding protein YqeH [Bacillus amyloliquefaciens FZB42]
 gi|154352678|gb|ABS74757.1| YqeH [Bacillus amyloliquefaciens FZB42]
          Length = 366

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + L G     L  ++ R   V +         +    L   DV ++ +S   G   +I+ 
Sbjct: 98  IILVGNKADILPKSVKRERLVQWM--KREAKEY---GLKPLDVFLISASRGQGMKEVIDA 152

Query: 464 LL 465
           + 
Sbjct: 153 IE 154


>gi|208965720|dbj|BAG72874.1| zinc finger protein 142 [synthetic construct]
          Length = 1687

 Score = 38.7 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 62/305 (20%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 285 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 344

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P           H+      E+I    
Sbjct: 345 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNPVAYQDHVGKMHAHEKIHQCP 404

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
              F    K   I      +  +  K +      + +    K        + +       
Sbjct: 405 ECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYMCTECGY 464

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             + +   +     H G   +              L++          +          +
Sbjct: 465 VTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCE-----VCAF 519

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            C         +   ++    S        S  S H    + AVL          + FH 
Sbjct: 520 ACKRKYELQKHMASQHHPGTPSPLYPCHYCSYQSRH----KQAVLSHENCKHTRLREFHC 575

Query: 391 DLAEV 395
            L + 
Sbjct: 576 ALCDY 580


>gi|326316583|ref|YP_004234255.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373419|gb|ADX45688.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 333

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 13/108 (12%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQKG 64
              +++A+ G   G      +  I+ +DS    P +  F +          +        
Sbjct: 5   LRQIVEALGGTIEGGDGDAEILRIAPLDS--AEPGDLAFLSNP-------RYRQQLAASR 55

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIA 112
           A  V+V   M     +        +D      + A     R      A
Sbjct: 56  AACVIVAPAMREEALARGA-CIVAEDPYAYFAR-ATQLWKRLHGRTPA 101


>gi|239501629|ref|ZP_04660939.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Acinetobacter baumannii AB900]
          Length = 356

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 29/121 (23%)

Query: 5   WTFHDLLQAIQGHSIGIV----------PQGFVNGISIDSRSIAPQEAFFAIKGPHYDGH 54
           +   +L   ++G  IG                VN ++                    +G 
Sbjct: 6   YRLDELAHLVKGELIGEGSLQFSNLASLENAEVNHLTF------------------VNGE 47

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
             +  A    AG  ++   +   +         VD+   A   L      +  +T I  T
Sbjct: 48  KHLDQAKVSRAGAYIITAALKEHLPEKD-NFIIVDNPYLAFAILTHVFDKKISSTGIEST 106

Query: 115 G 115
            
Sbjct: 107 A 107


>gi|206976041|ref|ZP_03236951.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217961946|ref|YP_002340516.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|229141195|ref|ZP_04269734.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
 gi|206745793|gb|EDZ57190.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus H3081.97]
 gi|217067672|gb|ACJ81922.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Bacillus cereus AH187]
 gi|228642236|gb|EEK98528.1| Folyl-polyglutamate synthetase [Bacillus cereus BDRD-ST26]
          Length = 433

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 72/290 (24%), Gaps = 26/290 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T+++ P + +IT I   H+          + +           +        
Sbjct: 147 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLGEIAYEKA-----GIIKSGVPVITGV 201

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
             E        +  +   +  +  N    L K      + +          +V     G 
Sbjct: 202 QDEEALQVIQKVAKENQANLYEMGNHFTSLHKQSSEDGEQFDFTCPFASFEDVRITMKGS 261

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
           H   N  + L  V  +   +   I+   +    +      R    Q    +I +  +   
Sbjct: 262 HQVGNAALALMAVMYVKIYLSFLIEEEEIRTGLQEAYWVGRFEKLQSNPDIIIDGAHNPE 321

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV--------LSLYNIS 402
                  +V S             LGD        +  H  + ++         + +   
Sbjct: 322 GIESLVKTVESHYKDKNVIVLFTALGD--------KQLHNMVGQLESIADEIIFTTFAFD 373

Query: 403 HVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               +G      K+           +            L + DV ++  S
Sbjct: 374 RAISAGELASYAKEESK-----LVFDNWKEAIDTKVEMLGENDVFIITGS 418


>gi|118590891|ref|ZP_01548291.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
 gi|118436413|gb|EAV43054.1| UDP-N-acetylmuramate--L-alanine ligase [Stappia aggregata IAM
           12614]
          Length = 466

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 72/415 (17%), Positives = 132/415 (31%), Gaps = 48/415 (11%)

Query: 53  GHDFILHAVQKG-AGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKA 108
           GH     A   G A ++VV++ +      L      +  V  V  A   LA   R +   
Sbjct: 58  GH----AAENLGDAEVLVVSSAIKKDNPELVAAREKLIPV--VRRA-EMLAELMRFKQA- 109

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELG 168
             IA+ G+ GKTTT  M+   L +       I     +            + D+ + E  
Sbjct: 110 --IAVGGTHGKTTTTSMVAALLDAGGLDPTVINGGIIN---AYGTNARMGEGDWMVVEAD 164

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S           +   +A++T I P HL ++     + +A  +  E +   G   +  D
Sbjct: 165 ES-----DGTFVKLPADVAIVTNIDPEHLDHYGDFAGVRAAFRQFVENVPFYGFAVMCLD 219

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------M 281
               + +      +  + + ++G +  AD +         +S   V L+ +         
Sbjct: 220 HPEVQTMI---GTIEDRRVVTYGANPQADVRYTDVSMDGGKSMFSVTLRDRRSGQVIELN 276

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTL 341
            +     G H   N    + + S L    D   K ++ F   + R               
Sbjct: 277 NLTLPMPGLHNVSNATAAIAVASQLGVGADELRKGIAAFGGVKRRFTHTGTVGG----VQ 332

Query: 342 IDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ-SFHIDLAEVLSLYN 400
           + + Y  +P  +KA +          +G+ IAV+         S      +         
Sbjct: 333 VFDDYGHHPVEIKAVLHAA---RESTKGKVIAVMQPHRYTRLHSLFDDFSNCFNDADAVI 389

Query: 401 ISHVWLSGFHVLALKD--------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
           I+ V+ +G   +                  +V   E  + L   I+     GD V
Sbjct: 390 IAPVYAAGEQPIEGAAHTDLVSGMKTRGHRNVQAIEGPEDLPALIKDLAEPGDFV 444


>gi|322420913|ref|YP_004200136.1| FolC bifunctional protein [Geobacter sp. M18]
 gi|320127300|gb|ADW14860.1| FolC bifunctional protein [Geobacter sp. M18]
          Length = 424

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 13/65 (20%)

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYS-----ETMD-----GLFLFIQSSLVDGDVVVVK 450
              V+       AL+ ALP      +      ETM+           ++   D D+++V 
Sbjct: 345 ADRVFAV---APALERALPAGELAIHCFAAGVETMEAGSVAEGIELAKNLAQDDDLILVC 401

Query: 451 SSNSC 455
            S   
Sbjct: 402 GSLFT 406


>gi|218778063|ref|YP_002429381.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759447|gb|ACL01913.1| FolC bifunctional protein [Desulfatibacillum alkenivorans AK-01]
          Length = 444

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 94/300 (31%), Gaps = 28/300 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
            VD+ + E GM   G     T++++P + +IT I+  H         IA    E    ++
Sbjct: 134 GVDYAVMETGM---GGRLDATNVLKPELCIITNISVEHEMYLGNT--IAQIAYEKAGIIK 188

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
               +              K+ A     +Y  GK         K ++     +       
Sbjct: 189 PGVPVVTGVRQPDAIKAVEKAAAESKAPLYRMGKDF-------KTRRLQGGGFNFYGQDH 241

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +     G +   N  + L     LT       +  +    ++ +       + +  
Sbjct: 242 AWKGLQCRLKGEYQIPNASLALAGCQALTKRGAKITEEQAKAGLEQVKWPGRLETIQESP 301

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++D ++N     +     +   ++     R + V+      G L    +  +  +L  
Sbjct: 302 MVILDGAHNLAAMKV-----LTKYLAETFADRDVTVIT-----GFLDDKPYKKMLPMLEA 351

Query: 399 YNISHVWLSGFHVLALKDA----LPRSIHVHYSE--TMDGLFLFIQSSLVDGDVVVVKSS 452
                +        A++      L R+    + E  +++    +   +  D DV+VV  S
Sbjct: 352 LAAKIIITRPKIGRAVETKELTPLIRNKKDRFVEKPSVEEAVKYALENARDTDVIVVAGS 411


>gi|89255630|ref|YP_512991.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica LVS]
 gi|115314134|ref|YP_762857.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica OSU18]
 gi|167009928|ref|ZP_02274859.1| UDP-3- [Francisella tularensis subsp. holarctica FSC200]
 gi|254367024|ref|ZP_04983060.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica 257]
 gi|119371425|sp|Q2A5L0|LPXD1_FRATH RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
          N-acyltransferase 1
 gi|119371426|sp|Q0BNW4|LPXD1_FRATO RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
          N-acyltransferase 1
 gi|89143461|emb|CAJ78637.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica LVS]
 gi|115129033|gb|ABI82220.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica OSU18]
 gi|134252850|gb|EBA51944.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica 257]
          Length = 347

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  + G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIITGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKAAAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|33596681|ref|NP_884324.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis 12822]
 gi|33600444|ref|NP_888004.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|81427145|sp|Q7W8R6|RLME_BORPA RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|81431686|sp|Q7WMD3|RLME_BORBR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|33568043|emb|CAE31956.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           bronchiseptica RB50]
 gi|33573382|emb|CAE37366.1| ribosomal RNA large subunit methyltransferase j [Bordetella
           parapertussis]
          Length = 210

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 374 VLGDMCEMGELSQSFH-IDLAEVLSLYNISHVWLSGFHVLALKD-ALPRSIHVHYSETMD 431
           V G     G+  +      LA ++    +  V         L    +  S  + +    +
Sbjct: 92  VAGVEFIQGDFREEAVLEQLARMVEGQPVDLVIS--DMAPNLSGVGVADSARIQHV--CE 147

Query: 432 GLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
               F  + L     ++VK+ +  GF +++    + F 
Sbjct: 148 LALEFACAHLKPNGALIVKAFHGSGFSQIVQSYKQRFK 185


>gi|306818519|ref|ZP_07452242.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
 gi|304648692|gb|EFM45994.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris ATCC
           35239]
          Length = 490

 Score = 38.7 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 106/364 (29%), Gaps = 38/364 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML+    ++    A        + +              + E   
Sbjct: 122 LLAVAGAHGKTTTSAMLS---KALWDVGADPSFAIGGVILEYGTGARLGRGREFVIEADE 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    + +      P + V+T I P HL ++   E    A  +    +   G I    DD
Sbjct: 179 SDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAIVACGDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA--------DFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    L  + H+      Y FG             + +L       +   M    +    
Sbjct: 234 AGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAGHAEVDLRVMRCHPEQLLF 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGF 338
             V           +     + +    +         A            R    L +  
Sbjct: 294 HDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQSLSSFTGTGRRMQFLGEIG 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  +P  + A +     ++    G    ++     +   +++F  + A VLS 
Sbjct: 354 GVRIYDDYGHHPTEVAATLGAARDLA----GNGRLLVCFQPHLYSRTKTFASEFATVLSA 409

Query: 399 YNISHVWLSGFHVL-----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                V + G +             A+ D +       +   M      + +    GD++
Sbjct: 410 A--DEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDMYAAGDAVYNLAKPGDLL 465

Query: 448 VVKS 451
           +   
Sbjct: 466 LFLG 469


>gi|311085956|gb|ADP66038.1| UDP-N-acetylmuramate-alanine ligase [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 484

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 58/414 (14%), Positives = 140/414 (33%), Gaps = 46/414 (11%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
           DFI   ++     +  N   + +    +IP+         + ++ ++         IA++
Sbjct: 79  DFI---IKS--SAISSNNKEILAAKKRNIPILL----RAEMIEILMSF-----KKGIAVS 124

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
           G+ GKTTT  M+                 N  +   +          + I E   S    
Sbjct: 125 GTHGKTTTTSMIADIFIDSGLD---PTVINGGLIKSINSYAKLGSSSYFITEADES---- 177

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
                  + P+I ++T I   H+ ++   +       + F    K  T++          
Sbjct: 178 -DASFLYLNPNIIIVTNIESDHIDHY---DNSFKKLKQTFLIFLKKITLYGTAIVCIDNN 233

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSE-QSWMEVQLQGKSMEVVHHGIGYHMA 293
                       I ++G +KNAD ++  +KQ +    +  +    K + ++ +  G H A
Sbjct: 234 AICDILTNLKCKIITYGFNKNADVRIFLYKQNNFIGHFYIILKNNKKLNIILNIPGKHNA 293

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR-----YRCALNQGFFTLIDESYNA 348
            N    + +      + D  I +L  F     R +           ++    ++ + Y  
Sbjct: 294 LNAAAAIALAIHEGINNDLMITSLKNFQGTCRRFEFLGFLSIDQGFDKRANCMLIDDYGH 353

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV---- 404
           +P  +   I  +    P+       ++         + + + D  + LS  ++  +    
Sbjct: 354 HPTELSETIKTIRISWPNKN----LIMIFQPHRYTRTYNLYHDFVQTLSQVDVLLILHVY 409

Query: 405 -----WLSGFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
                ++ G   L+L + + +    +V      + +   +  +L   D+++++ 
Sbjct: 410 SANEKFIVGADSLSLFNDIKKLGKNYVTLISNHNMILDTLIQTLQGNDIILIQG 463


>gi|251792489|ref|YP_003007215.1| FolC bifunctional protein [Aggregatibacter aphrophilus NJ8700]
 gi|247533882|gb|ACS97128.1| FolC bifunctional protein [Aggregatibacter aphrophilus NJ8700]
          Length = 448

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 86/294 (29%), Gaps = 15/294 (5%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK----AEIFEGLEKTGTIFLN 226
            LG     T++V  H+AVIT+I   H        E    +        + +     +   
Sbjct: 145 GLGGRLDATNIVDNHMAVITSIDIDHTDFLGSTREQIGFEKAGIFRANKPVIIGEPMIPQ 204

Query: 227 YDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
                   L ++     +   +S           +  ++       ++ L    +     
Sbjct: 205 AMLDRANQLGSQHFCRHLDWTFSQQGQSWTWQTTQSDEKVRWNFLTDLPLCQIPLANAAT 264

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
            +         ++L +V   +      I       P+       +   +      +    
Sbjct: 265 ALAAVQKLPFEISLDVVK-KSLAEVELIGRFQTLKPECLAHLAQKLNRHVSQLPQMIIDV 323

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL 406
             NP + +     L+ +     G+ IAV G + +  + ++     L  ++  +    +  
Sbjct: 324 GHNPHAARYLAEKLTALKAQSNGKFIAVCGMLKD--KDAEGVLEPLLPLIDEWRCVTLGG 381

Query: 407 S-GFHVLALKDALPRSIHVH-------YSETMDGLFLFIQSSLVDGDVVVVKSS 452
             G     L   L ++  +H       YS ++            + D ++V  S
Sbjct: 382 YRGQTGEQLFVTLQQTARLHQKVVKGSYSNSVAEGVKSAVEISNENDTLLVFGS 435


>gi|213026852|ref|ZP_03341299.1| hypothetical protein Salmonelentericaenterica_32180 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 24

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 448 VVKSSNSCGFYRLINLLLEE 467
           +VK S S     +++ L E+
Sbjct: 2   LVKGSRSAAMEDVVHALQEK 21


>gi|75676041|ref|YP_318462.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Nitrobacter winogradskyi Nb-255]
 gi|119371428|sp|Q3SRI1|LPXD1_NITWN RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase 1
 gi|74420911|gb|ABA05110.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Nitrobacter winogradskyi Nb-255]
          Length = 362

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 11/101 (10%)

Query: 6   TFHDLLQAIQGHSIGIV-PQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
           T  ++  +     +        + G+ S+D           A     +D H +       
Sbjct: 14  TLAEIAASTGAQLVDASRGGIRIIGLASLD----QAGPMHLAF----FDNHKYAGQLAAT 65

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
            AG  +V+     +     + V        A   +A     
Sbjct: 66  KAGACLVS-PRFEADVPAHVAVLRSKAPFRAFVSIARDFHG 105


>gi|40788922|dbj|BAA13242.2| KIAA0236 [Homo sapiens]
          Length = 1696

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/305 (10%), Positives = 62/305 (20%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 294 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 353

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P           H+      E+I    
Sbjct: 354 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNPVAYQDHVGKMHAHEKIHQCP 413

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
              F    K   I      +  +  K +      + +    K        + +       
Sbjct: 414 ECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYMCTECGY 473

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
             + +   +     H G   +              L++          +          +
Sbjct: 474 VTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCE-----VCAF 528

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
            C         +   ++    S        S  S H    + AVL          + FH 
Sbjct: 529 ACKRKYELQKHMASQHHPGTPSPLYPCHYCSYQSRH----KQAVLSHENCKHTRLREFHC 584

Query: 391 DLAEV 395
            L + 
Sbjct: 585 ALCDY 589


>gi|304389582|ref|ZP_07371544.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327135|gb|EFL94371.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 499

 Score = 38.3 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 130/416 (31%), Gaps = 58/416 (13%)

Query: 65  AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS------KATIIAITGSVG 118
           A  +VV T  +      +           AL  L +  R ++         ++A+ G+ G
Sbjct: 82  ANAIVVVTSAIHEDNPEAARA-------KALG-LEIWHRSQALDFCTRSHELVAVAGAHG 133

Query: 119 KTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL 178
           KT+T  M+  +L       A        I   L            + E   S    + + 
Sbjct: 134 KTSTSSMMAHSLLD---IGADPSFAIGGIIADLGTGARLGSGSAFVIEADESDGSFLNYS 190

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
                P + VIT I P HL ++        A       L K G + L  DD+  + L  +
Sbjct: 191 -----PAVEVITNIEPDHLDHWGSAAAFEQAFVNFTGRLRKGGALVLCADDAGVKRLAEQ 245

Query: 239 SHALGI-----KTIYSFGKSKNADFQLRKWKQCSEQSWMEVQ-------LQGKSMEVVHH 286
             A G         Y FG     D  ++  +        + Q        Q    ++   
Sbjct: 246 VSARGDADGPRVISYGFGVPLAGDVVVQLHEPELGPGRGQCQVTITDAGQQVFHGQLNLR 305

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G HM  N    LG   +L AD+   I AL  F   + R +          +    + Y
Sbjct: 306 IGGKHMLLNAGGALGAAYVLGADLSQFIAALRTFSGADRRMQPVGERDGVRIY----DDY 361

Query: 347 NANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-----IDLAEVLSLYNI 401
             +P  + A +     ++  G       L    +    S+++H       +   +    +
Sbjct: 362 GHHPTEIAATLQAARDLAGKGR------LLVCFQPHLYSRTYHNVDAFARVFATVDDLTV 415

Query: 402 SHVWLS------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKS 451
             V+ +      G +   + + L +     Y   M    L    +   GD ++   
Sbjct: 416 CAVYAAREAPIPGVNGNIITEHLGKG---TYVADMYAAGLHAFRAARPGDFLLFLG 468


>gi|326318672|ref|YP_004236344.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323375508|gb|ADX47777.1| cyanophycin synthetase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 861

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 34/318 (10%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIASAKAE 212
              + D  + E      G +R      R  +AV+T +        +    ++++A  K  
Sbjct: 530 AHPETDAAVLECA--RGGLLREGLGFDRCQVAVVTNVGEGDHLGMNFIHTVQDVAILKRV 587

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWM 272
           + + +   G   LN  D     +   S    I           A  + R  +        
Sbjct: 588 VVQNVAADGYAVLNAADPHVAAMAPSSPGKVIFFALDRHHPVMATHRARGQRVVYVDGDH 647

Query: 273 EVQLQGKSMEVVHHGIGY--------HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            V  +    E +                 +N + ++     +    DT  + L+ F    
Sbjct: 648 IVAAEDSWREQIALRDIPLTRNGAIGFQVENAMASIAAAWGIGLPWDTIRRGLAGFVNDS 707

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    ++    T+I + Y  NP +M+A +S +  +      RR  V+    +  + 
Sbjct: 708 DNAPGRFNVMDFRGATVIAD-YGHNPDAMRALVSAVDALP---GNRRSVVISGAGDRRDE 763

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMD--- 431
                 ++           V L           G  +  L++ L  +    Y + +    
Sbjct: 764 DIRGQTEILGAA----FDDVILYQDAAQRGRADGEVMALLREGLANASRTKYIDEIRGEF 819

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  + L  GD+ +V
Sbjct: 820 AAIDAALARLQPGDLCLV 837


>gi|213964010|ref|ZP_03392254.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sputigena Capno]
 gi|213953342|gb|EEB64680.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga sputigena Capno]
          Length = 339

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 18/115 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE----AFFAIKGPHYDGHDFILHA 60
           +T   +   + G   G  PQ  V  +S     I        +F A     +    FI   
Sbjct: 3   FTALQIANVLGGEVEGN-PQIEVYKLS----KIEEGTEGGISFLANPKYKH----FI--- 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
               A +V+VN D  A   ++S  +  VDD   A +KL +    + K   + I  
Sbjct: 51  YTTKASIVIVNKDFEAE-DTISATLVRVDDAYAAFSKL-LEFYNQVKMNKVGIEQ 103


>gi|322514417|ref|ZP_08067460.1| dihydrofolate:folylpolyglutamate synthetase [Actinobacillus ureae
           ATCC 25976]
 gi|322119665|gb|EFX91723.1| dihydrofolate:folylpolyglutamate synthetase [Actinobacillus ureae
           ATCC 25976]
          Length = 433

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 74/287 (25%), Gaps = 18/287 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V PH+A+IT+I   H+                    E  G         
Sbjct: 147 GLGGRLDATNIVDPHLAIITSIDIDHVDFLGD-------------NREDIGREKAGIFRE 193

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++  +          +   +     +   WK   E      Q +    + +      
Sbjct: 194 NIPVIIGEPDCPRSILQQAKALNCQVIRRNVNWKFSVENDRFHWQSEFIDWQDLPMPQIP 253

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
                  +          +   A  AL                             + + 
Sbjct: 254 IPNAGTALAALAQLPFEINEQVARTALQEAQMTGRFQTLNEQDFANFSGKRPFAQVSIDV 313

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID-LAEVLSLYNISHVWLS-G 408
                A   L+      +     +      + +   S  ++ LA V+  ++ + +    G
Sbjct: 314 GHNPHAAKYLAGRLNSLKQPNQKIFAVFSALVDKDLSGIVEPLANVIDEWHCTGLAGYRG 373

Query: 409 FHVLALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                +   L +   +    Y +T+      + +     D++++  S
Sbjct: 374 QSGEVVYQKLAKVLPNSTACYYQTVPEAAESLFAKASKTDIILIFGS 420


>gi|304398236|ref|ZP_07380110.1| FolC bifunctional protein [Pantoea sp. aB]
 gi|304354102|gb|EFM18475.1| FolC bifunctional protein [Pantoea sp. aB]
          Length = 422

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 401 ISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   + +   G    + +  L          +++  +   +      D V+V  S
Sbjct: 349 VDAWYCAPLDGPRGASAEQLLDCLSQGEAFSSVELAWQQARQRAAPQDTVLVCGS 403


>gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase [Herbaspirillum seropedicae SmR1]
 gi|300073499|gb|ADJ62898.1| 23S rRNA methyltransferase (Cell division protein FtsJ) protein
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 384 LSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVD 443
                   L  VL       + LS         A+  +  V Y   +     F Q  +  
Sbjct: 104 REDEPVRQLEAVLDGRKAD-LVLSDMAPNLSGVAIADAARVEYLIDL--AIDFAQLHMKP 160

Query: 444 GDVVVVKSSNSCGFYRLINLLLEEFPAI 471
           G  ++VK  N  G+  L++    EF  +
Sbjct: 161 GGSLLVKCFNGTGYNELVHKFRAEFKTV 188


>gi|78778407|ref|YP_396519.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
 gi|78711906|gb|ABB49083.1| UDP-N-acetylmuramate--L-alanine ligase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 469

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 101/351 (28%), Gaps = 28/351 (7%)

Query: 109 TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFEL 167
           T +A+ GS GKT+T   L+  L       + I         P+  +     +  F + E+
Sbjct: 117 TTLAVAGSHGKTSTSTFLSTLLELCTHNSSSITGGII----PIYNSNCHLANTKFLVAEV 172

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY 227
             S         +  +  I +I  I   H  +FS + E+ S+  +     +K    F   
Sbjct: 173 DES-----DGTINKYKSDIGLINNIDFDHCDHFSDLGEVISSFKDFAANSKKLLLNFDCV 227

Query: 228 DDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHG 287
                   +     +              +      K     +++               
Sbjct: 228 TTRSNFYSENNWSNITANKAAYAIIPTEINESHTIGKYYENGNFISSLDIPIPGLHNLS- 286

Query: 288 IGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
                  N+   +    ++  D     K +      + R +       +  +       N
Sbjct: 287 -------NITAAIAASRMIGVDFLEIKKNIKYLKLPKKRFEFRGQVDERNLYDDYAHHPN 339

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNI---SHV 404
              A++K     ++    +       +           + F  + A  LS  +I   + +
Sbjct: 340 EIKATIKLGRLFINHKRNNESHNGRLIAIFQPHRYSRVKQFAKEFALELSKADIIYITSI 399

Query: 405 WLSGF------HVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           + +G       +   + D +  ++ +V Y      +          GD+++
Sbjct: 400 YAAGEGNEDNINSTIITDLIYKQNKNVSYINNYHEITKKFYELTQKGDLIL 450


>gi|254450302|ref|ZP_05063739.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
 gi|198264708|gb|EDY88978.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Octadecabacter
           antarcticus 238]
          Length = 465

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 54/394 (13%), Positives = 112/394 (28%), Gaps = 36/394 (9%)

Query: 67  LVVVNTDMVASIGSLSIPVF---------GVDDVLGALNKLAVAARLRSK--ATIIAITG 115
             ++ +  +  +     PV            +D+       A +          +IA+TG
Sbjct: 68  ATLITSPGIPHLYPEPHPVIARALAEGCPVDNDIGLFFRSFATSEWDEFDSIPKVIAVTG 127

Query: 116 SVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEI 175
           S GK+TT  ++   L    +          +IG  +       D +  + EL        
Sbjct: 128 SNGKSTTSALIHHILEHAGR----PAQLAGNIGRGVLDLDEAHDGEVIVLELSSYQTD-- 181

Query: 176 RFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
             L   + P +AV T ++P HL   +G+    +AK  +F        +    +     + 
Sbjct: 182 --LARALTPDVAVFTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAVIGVDEMEGRYIA 239

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQN 295
              S       +      +  D                 + +      +    G     N
Sbjct: 240 NQLSEGPSDDRVIRVSAGQKIDGIGWSVFARKGFLSEYRKWRQVGSIDLRAISGLPGVHN 299

Query: 296 MLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKA 355
                   +   A         +     +G   R +    +     +++S   N  +   
Sbjct: 300 HQNACAAYAACRALGIGPRVIEAALISFKGLPHRSQLIAEKVGVRYVNDSKATNVDAAAK 359

Query: 356 AISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK 415
           A++  S++     G          E G  +         +L    +   ++ G    A  
Sbjct: 360 ALAAFSKVRWICGGLE-------KEGGLDA---------LLPAPTVVKAYVIGREAAAFA 403

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
             L + ++V     M        +    GD V++
Sbjct: 404 MKL-KGLNVEVCGDMATAVAKAGAEAEAGDTVLL 436


>gi|311278724|ref|YP_003940955.1| FolC bifunctional protein [Enterobacter cloacae SCF1]
 gi|308747919|gb|ADO47671.1| FolC bifunctional protein [Enterobacter cloacae SCF1]
          Length = 422

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 401 ISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           +   + +   G      +  +          T+   +    +     D V+V  S
Sbjct: 349 VDRWYCAPLEGPRGATAEQLVEHLRDGEVYATVAQAWHTAMADARPEDTVLVCGS 403


>gi|296437236|gb|ADH19406.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/11222]
          Length = 416

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 13/78 (16%)

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
                   V   G     +   L     V   + +    L  +   V GDV+V+    +S
Sbjct: 333 ALRKAAKSVVAMGECAQEIARDLEE-FPVTVVKNLSEALLCAEEQAVPGDVIVLSPACAS 391

Query: 453 ---------NSCGFYRLI 461
                        F +L+
Sbjct: 392 FDQFRSYEERGAMFKQLV 409


>gi|254368559|ref|ZP_04984575.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica FSC022]
 gi|157121462|gb|EDO65653.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. holarctica FSC022]
          Length = 335

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  + G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIITGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKAAAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|146365|gb|AAA23966.1| dedC protein [Escherichia coli]
          Length = 423

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    +++   +    +     
Sbjct: 337 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMAEPKAE 396

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 397 DTVLVCGS 404


>gi|15605491|ref|NP_220277.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789500|ref|YP_328586.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis A/HAR-13]
 gi|237803188|ref|YP_002888382.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805109|ref|YP_002889263.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|255311592|ref|ZP_05354162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 6276]
 gi|255317893|ref|ZP_05359139.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 6276s]
 gi|30315980|sp|O84763|MURD_CHLTR RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|122063242|sp|Q3KKT4|MURD_CHLTA RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|3329220|gb|AAC68353.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76168030|gb|AAX51038.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis A/HAR-13]
 gi|231273409|emb|CAX10324.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231274422|emb|CAX11217.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|296436307|gb|ADH18481.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/9768]
 gi|296438166|gb|ADH20327.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/11074]
 gi|297140667|gb|ADH97425.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis G/9301]
 gi|297748888|gb|ADI51434.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis D-EC]
 gi|297749768|gb|ADI52446.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis D-LC]
          Length = 416

 Score = 38.3 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 13/78 (16%)

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
                   V   G     +   L     V   + +    L  +   V GDV+V+    +S
Sbjct: 333 ALRKAAKSVVAMGECAQEIARDLEE-FPVTVVKNLSEALLCAEEQAVPGDVIVLSPACAS 391

Query: 453 ---------NSCGFYRLI 461
                        F +L+
Sbjct: 392 FDQFRSYEERGAMFKQLV 409


>gi|332815514|ref|XP_003309529.1| PREDICTED: zinc finger protein 142 [Pan troglodytes]
          Length = 1645

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 51/305 (16%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 352 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 411

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P          A+  +   +       
Sbjct: 412 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNP---VAYQDHVGKMHAHEKIH 468

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                         L          K     L   T                 K      
Sbjct: 469 QCPECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYM--- 525

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                      +          A ++       S      D           K    +  
Sbjct: 526 -CTECGYVTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCEVC 584

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A  + +      +   +P +             +    + AVL          + FH 
Sbjct: 585 AFACKRKYELQKHMASQHHPGTPAPLYP--CHYCSYQSRHKQAVLSHENCKHTRLREFHC 642

Query: 391 DLAEV 395
            L + 
Sbjct: 643 ALCDY 647


>gi|328554303|gb|AEB24795.1| GTPase YqeH [Bacillus amyloliquefaciens TA208]
 gi|328912699|gb|AEB64295.1| GTPase involved in ribosome 30S assembly [Bacillus
           amyloliquefaciens LL3]
          Length = 366

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + L G     L  ++ R   V +         +    L   DV ++ +S   G   +I+ 
Sbjct: 98  IILVGNKADILPKSVKRERLVQWM--KREAKEY---GLKPLDVFLISASRGQGMKEVIDA 152

Query: 464 LL 465
           + 
Sbjct: 153 IE 154


>gi|325288637|ref|YP_004264818.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324964038|gb|ADY54817.1| UDP-N-acetylmuramate--L-alanine ligase [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 453

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 107/347 (30%), Gaps = 28/347 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP-VDVDFGIFELGM 169
           I I+G+ GKTTT  M+   L       + +   +    VP           ++ + E   
Sbjct: 108 ICISGTHGKTTTTAMIGKILVDSGIDPSIVVGSS----VPSIGGNARAGKGNYFVAESCE 163

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                + +      P   V+T I   H   +  I ++ +A   +   L   G + +  +D
Sbjct: 164 YRRHFLNYS-----PQHLVVTNIEFDHPDYYKDIHDVIAAFQSLTGKLPANGNLIIWQED 218

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ-------GKSME 282
                ++ K+       I ++G S++AD +       +  S   V +           + 
Sbjct: 219 PNRTQIQTKA------PITTYGFSEDADIKAENIVYSNGGSIFSVVINKESIGTLMLPVA 272

Query: 283 VVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
             H+ +    A  +   LGI         +          + G         +       
Sbjct: 273 GKHNILDALAAIALAFRLGIAPSEIIRSLSGFDGTKRRFERLGTKNGAVIFDDYAHHPTE 332

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH-IDLAEVLSLYN- 400
            ++             + +   PH   R   +L +  E   L+      D+         
Sbjct: 333 IQTTLDGVRLCFPDRRIRAVFQPHTFSRTEKLLYEFSEAFSLADEVVLADIFSSARENKT 392

Query: 401 ISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                 S      +     + I   Y  T+D +  ++  +L +GD+V
Sbjct: 393 CDSTVSSSNLATLINQ---KGIDTKYFPTLDEISSYLGQTLQEGDLV 436


>gi|308174356|ref|YP_003921061.1| GTPase [Bacillus amyloliquefaciens DSM 7]
 gi|307607220|emb|CBI43591.1| GTPase involved in ribosome 30S assembly [Bacillus
           amyloliquefaciens DSM 7]
          Length = 366

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINL 463
           + L G     L  ++ R   V +         +    L   DV ++ +S   G   +I+ 
Sbjct: 98  IILVGNKADILPKSVKRERLVQWM--KREAKEY---GLKPLDVFLISASRGQGMKEVIDA 152

Query: 464 LL 465
           + 
Sbjct: 153 IE 154


>gi|304411874|ref|ZP_07393485.1| FolC bifunctional protein [Shewanella baltica OS183]
 gi|307303358|ref|ZP_07583113.1| FolC bifunctional protein [Shewanella baltica BA175]
 gi|304349734|gb|EFM14141.1| FolC bifunctional protein [Shewanella baltica OS183]
 gi|306913718|gb|EFN44140.1| FolC bifunctional protein [Shewanella baltica BA175]
          Length = 423

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------ 407
            AA  ++ Q++P   G+R+  L  M +           +  V+    +   +L       
Sbjct: 307 HAARFLVQQLAPMVVGKRVFALCGMLK-----DKDIAGVLPVIHPL-VDTWYLVSLHGER 360

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G     L+  L         E +   +  +++ +   DVV+V  S
Sbjct: 361 GASSAMLRKTLAPEASAFEFEGIAEAWSALKAQINPDDVVIVFGS 405


>gi|148668517|gb|EDL00836.1| zinc finger protein 366 [Mus musculus]
          Length = 727

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/259 (8%), Positives = 57/259 (22%), Gaps = 10/259 (3%)

Query: 104 LRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN--HIGVPLTLARMPVDVD 161
            R +      + +        +L  +         C   +    H+   +   +      
Sbjct: 248 KRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHK 307

Query: 162 FGIFE---LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIAS--AKAEIFEG 216
             +        SHL         V+PH   + +   A+ S     E   +   +    EG
Sbjct: 308 CQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCSRGFAYPSELKAHEAKHASGRENICVEG 367

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC---SEQSWME 273
             +      +    +   L+           Y   +      Q    KQ     +     
Sbjct: 368 PIQYNCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEH 427

Query: 274 VQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCA 333
                     +   +  H+  +  +      +            +               
Sbjct: 428 KCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKL 487

Query: 334 LNQGFFTLIDESYNANPAS 352
             + F  + +   + +  S
Sbjct: 488 CGKEFNRMHNLMGHLHLHS 506


>gi|24216850|ref|NP_714331.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198225|gb|AAN51349.1| UDP-N-acetylmuramate--L-alanine ligase [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 465

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 86/347 (24%), Gaps = 24/347 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             +           +I + G+ GKTTT  ++   L                 G+P     
Sbjct: 92  AAIGKFFLK--GKKVIVVAGTHGKTTTTFLIHHILKENGVEPGLFVGGIRKDGLPGFELG 149

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +    + E                  +P   V+  +   H   F  I  I +    +
Sbjct: 150 ---NGSIFVIEGDEYDTAFFDKSSKFLHYKPTYTVLNALDFDHADIFPDITAIETMFKRL 206

Query: 214 FEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
              +   G IF        + L       K          S    K  +      K    
Sbjct: 207 INLVPGNGKIFYWNGSGSLKKLVQHVSFTKVEGFEWNRKDSCLTWKKHELFWADQKLNPS 266

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                     +    V   I      +        +I +       + +    P     +
Sbjct: 267 LFGDHNYRNIEVAIRVCSEILKIQNPSGYKEGIAKAIDSFPGVKRRQDILFQSPNAIVME 326

Query: 329 RYRCALNQGFFTLI---DESYNANPASMKAAISVLSQISPHGE-------GRRIAVLGDM 378
            +         T+       +     S+    S  S  +   +       G  + +L ++
Sbjct: 327 DFAHHPVAVHETIHAVKKRFHGYKIISLFEPRSATSHRNVFQKEYSYSFIGSDLTILTEI 386

Query: 379 CEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDALPRSIH 423
             + ++S+   +D+ ++      N   + +       L   L + I 
Sbjct: 387 HNLKKVSKDIRLDVKKLAQKLLKNSKTIPVYAKDPKELLVKLEKMIP 433


>gi|149634332|ref|XP_001510952.1| PREDICTED: similar to ANK repeat and LEM domain-containing protein
           KIAA0692 [Ornithorhynchus anatinus]
          Length = 1025

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLEEFP 469
           D + R+  VH  E        ++         ++K S    F       +    + + FP
Sbjct: 216 DVMARNDRVHVYEDKKEALQAVK---------MIKGSRFKAFSSREAAEKFAKGICDYFP 266


>gi|187935191|ref|YP_001886692.1| folylpolyglutamate synthase [Clostridium botulinum B str. Eklund
           17B]
 gi|187723344|gb|ACD24565.1| tetrahydrofolate synthase [Clostridium botulinum B str. Eklund 17B]
          Length = 437

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 106/320 (33%), Gaps = 26/320 (8%)

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
           + L      VD+ I E+    LG     T+++ P ++VIT+I+  H++            
Sbjct: 129 MYLYYYNEKVDYAIIEV---GLGGELDSTNVITPIVSVITSISFDHMNILG---NCLYEI 182

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
           A    G+ K     +       E ++A      I     +    N+   +    +     
Sbjct: 183 AMQKAGIIKEEIPVVV-YPQTNEAMRAIVEKAKITKSTVYEIDGNSGTFIEVKHEEKFYQ 241

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
            +++    +   +    +G H   N+ + L  + IL            + +  E    + 
Sbjct: 242 KVKIYTGKELYNINLPLMGEHQILNLSVALTTIEILCEREGLIFNKELIENSIESVKWKG 301

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
           R  +      ++ +  +     ++    + + +  + +   + +L     +G L+     
Sbjct: 302 RLEVLNKKPLIVMDGAHN----IEGIKMLKNNVKKYFKYNNVFLL-----LGILADKQVE 352

Query: 391 DLAEVLSLYNISHVWLSGFHVLALK-------DALPRSIHVHYSETMDGLFLFIQSSLVD 443
           ++ + ++      V+    H    +         L  + +    ++ +     + S    
Sbjct: 353 EMIKEITPMAY-KVYALTPHSDRAELNTELKDHILKYNKNTIALDSYEDAMKTVLSEATS 411

Query: 444 GDVVVVKSSNSC--GFYRLI 461
            D++++  S        ++I
Sbjct: 412 EDLILISGSLYMIGDMRKII 431


>gi|308799037|ref|XP_003074299.1| unnamed protein product [Ostreococcus tauri]
 gi|116000470|emb|CAL50150.1| unnamed protein product [Ostreococcus tauri]
          Length = 622

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 23/287 (8%), Positives = 75/287 (26%), Gaps = 9/287 (3%)

Query: 82  SIPVFG----VDDVLGALNKLAVAARLRSKATIIAI---TGSVGKTTTKEMLTIALSSIK 134
           ++P+      V D +G L +LA          I +    T         +++        
Sbjct: 325 NVPIIIRIKAVIDSVGFLGQLASPFSHPFPFAIYSQSLRTSMECGGWDVDIIPEDWHHYL 384

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
           K +         + + + +    ++       +   ++   R     +     V+  +  
Sbjct: 385 KCWFKKDGDFRVVPIFMVMGNDAIEERNWNEAIKARYIQAKRHAWGAIDLSYIVMNYLEK 444

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNY--DDSFFELLKAKSHALGIKTIYSFGK 252
           +   +F    ++    AE            +      ++   +           + +   
Sbjct: 445 SDRVSFWRTTKLYMHAAEHHISWTLFWFTCMLGGLCSTWANPVLETYPFGIGLRMMTVIV 504

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
                F       C     + +    +  E     + + +       L  ++ +      
Sbjct: 505 FIPMSFACWFIVICEFYIRLFIIHDREHFECNTAPMWWQLMSQCQWFLMPLADMMFGSFA 564

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
            ++A      K          + +    +++++   +  SM    + 
Sbjct: 565 GLEAQFHMAIKPSMKYEVSAKVAKKKALIVEDASVPDSPSMYDRGTN 611


>gi|238795099|ref|ZP_04638691.1| Folylpolyglutamate synthase [Yersinia intermedia ATCC 29909]
 gi|238725594|gb|EEQ17156.1| Folylpolyglutamate synthase [Yersinia intermedia ATCC 29909]
          Length = 422

 Score = 38.3 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 58/205 (28%), Gaps = 21/205 (10%)

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
            +  D      +   +Q       Q  + +  +  +      N    L ++      +  
Sbjct: 221 YRRDDAWWFSQQAPFDQQRNSWDWQCGNHQWANLPLPNVPLANAATALAVLHYSGLPLSD 280

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
            +    +           R  +      LI +    NP + +     L+++  H  G+  
Sbjct: 281 EV----IRQGLLAASLPGRFQVVSEQPLLILDV-AHNPHAARYLTDRLARLPKH--GKVR 333

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYS 427
           AV+G + +          D+   L+     +   + +   G      +      +     
Sbjct: 334 AVVGMLSD---------KDIGGTLACLSEQVDEWYCAPLEGPRGATAEQLAEHLVLSRQF 384

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSS 452
             ++  +          DVV+V  S
Sbjct: 385 SDVETAWRQAMQDAEPQDVVIVCGS 409


>gi|134094399|ref|YP_001099474.1| ribosomal RNA large subunit methyltransferase J [Herminiimonas
           arsenicoxydans]
 gi|158513564|sp|A4G4B0|RLME_HERAR RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|133738302|emb|CAL61347.1| Ribosomal RNA large subunit methyltransferase J (rRNA
           (uridine-2'-O-)-methyltransferase) (23S rRNA
           methyltransferase) [Herminiimonas arsenicoxydans]
          Length = 214

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISH---VWLSGFHVLALKDALPRSIHVHYSET---- 429
           DM EM  ++   +  +       N+     V L+G  V  +   +  ++           
Sbjct: 86  DMLEMEPIADVHY--IQGDFREQNVLEQLEVVLAGRKVDLVLSDMAPNLSGIAVADAARM 143

Query: 430 ---MDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPAI 471
              ++    F Q  +     ++VK  N  GF  ++     EF  +
Sbjct: 144 MDIIELAIDFAQHHMKPSGSLLVKCFNGSGFNDIVEKFRHEFKTV 188


>gi|157676340|ref|NP_001099007.1| zinc finger protein 142 [Homo sapiens]
 gi|313104298|sp|P52746|ZN142_HUMAN RecName: Full=Zinc finger protein 142; AltName: Full=HA4654
          Length = 1687

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 51/305 (16%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 285 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 344

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P          A+  +   +       
Sbjct: 345 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNP---VAYQDHVGKMHAHEKIH 401

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                         L          K     L   T                 K      
Sbjct: 402 QCPECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYM--- 458

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                      +          A ++       S      D           K    +  
Sbjct: 459 -CTECGYVTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCEVC 517

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A  + +      +   +P +             +    + AVL          + FH 
Sbjct: 518 AFACKRKYELQKHMASQHHPGTPAPLYP--CHYCSYQSRHKQAVLSHENCKHTRLREFHC 575

Query: 391 DLAEV 395
            L + 
Sbjct: 576 ALCDY 580


>gi|119591036|gb|EAW70630.1| zinc finger protein 142 (clone pHZ-49), isoform CRA_a [Homo
           sapiens]
 gi|119591038|gb|EAW70632.1| zinc finger protein 142 (clone pHZ-49), isoform CRA_a [Homo
           sapiens]
          Length = 1687

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 51/305 (16%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 285 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 344

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P          A+  +   +       
Sbjct: 345 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNP---VAYQDHVGKMHAHEKIH 401

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                         L          K     L   T                 K      
Sbjct: 402 QCPECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYM--- 458

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                      +          A ++       S      D           K    +  
Sbjct: 459 -CTECGYVTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCEVC 517

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A  + +      +   +P +             +    + AVL          + FH 
Sbjct: 518 AFACKRKYELQKHMASQHHPGTPAPLYP--CHYCSYQSRHKQAVLSHENCKHTRLREFHC 575

Query: 391 DLAEV 395
            L + 
Sbjct: 576 ALCDY 580


>gi|71083191|ref|YP_265910.1| FolC bifunctional protein (folylpolyglutamate
           synthase/dihydrofolate synthase) [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062304|gb|AAZ21307.1| FolC bifunctional protein (Folylpolyglutamate
           synthase/Dihydrofolate synthase) [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 422

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 7/77 (9%)

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALK-----DALPRSIHVHYSETMDGLFL 435
           +G ++   H +                     A+K     + +    +++Y  +++    
Sbjct: 337 LGMMANKDHNEYMSYFKDIKSLTTIDIPNQPNAIKGSELKEKIKNFENINYKNSIEEAIS 396

Query: 436 FIQSSLVDGDVVVVKSS 452
            I   L + D++++  S
Sbjct: 397 SI--DLQENDIILITGS 411


>gi|224538306|ref|ZP_03678845.1| hypothetical protein BACCELL_03197 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520091|gb|EEF89196.1| hypothetical protein BACCELL_03197 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 346

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGP-------HYDGHDFI 57
           ++   +   IQG  +G      V+  +     I        I G         Y    +I
Sbjct: 3   FSAKQIATFIQGEIVG-DENATVHTFA----KIEEG-----IPGAISFLSNPKY--TSYI 50

Query: 58  LHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
               +  A +V+VN D V     +   +  VD+   +L KL      +SK   + I
Sbjct: 51  ---YETKASIVLVNKDFVPEQ-EIKATLIKVDNAYESLAKLLNLY-EQSKPKRVGI 101


>gi|71892063|ref|YP_277793.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
 gi|119371917|sp|Q493C2|LPXD_BLOPB RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|71796169|gb|AAZ40920.1| UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase
           [Candidatus Blochmannia pennsylvanicus str. BPEN]
          Length = 343

 Score = 38.3 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 28/108 (25%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGI-SIDSRSIAPQEAFFAIKGPHYDGH----- 54
           M  +    DL Q +     G      + G+ SI++  +               GH     
Sbjct: 1   MIEM-RLSDLAQQLNAKLHG-DENIIITGVASINNAQV---------------GHITFLK 43

Query: 55  --DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
              F+       A  V+++ + +       I    V+D   A  K+A 
Sbjct: 44  DQRFLSQLSSCRASAVILSKNNLIFCK---IAALVVEDPYIAYVKIAR 88


>gi|261495549|ref|ZP_05991995.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308656|gb|EEY09913.1| UDP-N-acetylmuramate--L-alanine ligase [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 454

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 93/319 (29%), Gaps = 31/319 (9%)

Query: 159 DVDFGIFELGM--SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           +  F + E     S   + R       P   +I  +   H   F  ++ I      +   
Sbjct: 153 NSPFFVIEADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRT 212

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           + ++G I     D   +             + S+ + +    Q   + +       + ++
Sbjct: 213 MPQSGCILSAIADQNVQDTLK---------MGSYSQLQFIGEQNEWFAKPLNADCSQFEV 263

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
               ++            NM   L  ++           A           +R       
Sbjct: 264 FHLGVKQGEVHWSIIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEV 323

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF---HIDLA 393
              T+ D+  +        AI           G+   +L  + E    +        ++A
Sbjct: 324 NGITVYDDFAHH-----PTAIEATIDALRGKVGKNQRILA-VLEPRSNTMKMGVHKDEIA 377

Query: 394 EVLSLYNISHVWLSGFHVLA-----LKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
             L  ++   V++    ++A     + + L +    ++S  +D L   +       + ++
Sbjct: 378 PSL--HDAEAVFVYQPDIIAWSVSEITNVLSQ--PAYWSANIDDLVDLVVKEAKPTEHIL 433

Query: 449 VKSSNSCGFYRLINLLLEE 467
           V  SN   F  +   LL +
Sbjct: 434 V-MSNG-AFGGIHQKLLAK 450


>gi|315283078|ref|ZP_07871348.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
 gi|313613276|gb|EFR87150.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria marthii FSL S4-120]
          Length = 123

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGL 433
           G+  +     +A++   Y  + ++ S           +  +   +P S      E     
Sbjct: 13  GDRDKGKRPQMAKIAVDYATNPIFTSDNPRSENPHAIIEDMIQGVPESDSYVVHENRRDA 72

Query: 434 FLFIQSSLVDGDVVVV--KS 451
             F  +    GDV+++  K 
Sbjct: 73  IRFAINEAKTGDVILIAGKG 92


>gi|298241643|ref|ZP_06965450.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
 gi|297554697|gb|EFH88561.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Ktedonobacter
           racemifer DSM 44963]
          Length = 644

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 89/308 (28%), Gaps = 42/308 (13%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
            H + P +AV+T I P HL+ ++G+E+ A AKA IF    + G    NYD+ +      +
Sbjct: 360 PHSISPLVAVMTNIYPDHLNTYNGMEDYAEAKANIFRFQTEHGIAVFNYDNPWTRHFGLE 419

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLM 298
           +           G++     +       S                     G H  +N+L+
Sbjct: 420 AP----------GETWFTSVEHGGSFPRSALVDGTPTQVEPLAFAETPLKGRHNLENILL 469

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
                 +L        + +  F     R              ++++S + +P + + A+ 
Sbjct: 470 ATTTARLLGVSESVIAETVRRFKGVSHRL---EEVCVWHGVRIVNDSTSTSPIAGQVALE 526

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDAL 418
              Q      G            G           E +       + L G     L  AL
Sbjct: 527 AFEQPIVLVAG------------GNTKHLPLEQWPETIIKRCRDVILLPGSGTDELLPAL 574

Query: 419 PRSIHVH--------YSETMDGLFLFIQSSLVDGDVVVVK-S--SNSCGFY------RLI 461
            + I                        +    GDV++      S            + +
Sbjct: 575 RQEIERQGVIDPVRGTFADFHQAIDAALALTRPGDVLLFSPGFTSFGMFLNEFDRGDKFV 634

Query: 462 NLLLEEFP 469
             + E+  
Sbjct: 635 AYIREKTK 642


>gi|260201266|ref|ZP_05768757.1| UDP-N-acetylmuramate--L-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289443657|ref|ZP_06433401.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
 gi|289416576|gb|EFD13816.1| UDP-N-acetylMuramate-alanine ligase [Mycobacterium tuberculosis
           T46]
          Length = 494

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 68/408 (16%), Positives = 121/408 (29%), Gaps = 45/408 (11%)

Query: 64  GAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           GA  VV     +              IPV         L KL        + T++     
Sbjct: 73  GATAVVTTYAAIPKTNPELVEARRRGIPVVLRP---AVLAKLMAG-----RTTLMVTGTH 124

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
              TTT  ++             +G      G            D  + E   S    ++
Sbjct: 125 GKTTTTSMLIVALQHCGLDPSFAVGGELGEAGT----NAHHGSGDCFVAEADESDGSLLQ 180

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
           +      PH+AVIT I   HL  +  +E   +      E +   G + +  DD     L 
Sbjct: 181 YT-----PHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTDDPGGAALA 235

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ--------GKSMEVVHHGI 288
            ++  LGI  +  +G                +       ++             +     
Sbjct: 236 QRATELGI-RVLRYGSVPGETMAATLVSWQQQGVGAVAHIRLASELATAQGPRVMRLSVP 294

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G HMA N L  L     + A  D  +  L+ F     R +             + + Y  
Sbjct: 295 GRHMALNALGALLAAVQIGAPADEVLDGLAGFEGVRRRFELVGTCGVGKASVRVFDDYAH 354

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL-- 406
           +P  + A ++    +   G+G R  V+     +   +++F  +    L+      V++  
Sbjct: 355 HPTEISATLAAARMVLEQGDGGRCMVVFQPH-LYSRTKAFAAEFGRALNAA--DEVFVLD 411

Query: 407 -SGFHVLALK--DALPRSIHV----HYSETMDGLFLFIQSSLVDGDVV 447
             G     L        + HV     Y      +   + ++   GDV+
Sbjct: 412 VYGAREQPLAGVSGASVAEHVTVPMRYVPDFSAVAQQVAAAASPGDVI 459


>gi|315282543|ref|ZP_07870931.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
 gi|313613809|gb|EFR87565.1| UDP-N-acetylmuramate--alanine ligase [Listeria marthii FSL S4-120]
          Length = 447

 Score = 38.3 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 58/387 (14%), Positives = 115/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  +G+          G H   N L  + +       V
Sbjct: 223 FDEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +     L  F   + R             +         +             V++   P
Sbjct: 283 EAVKNELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|313607760|gb|EFR83977.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate
           ligase [Listeria monocytogenes FSL F2-208]
          Length = 115

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 382 GELSQSFHIDLAEVLSLYNISHVWLSG--------FHVLALKDALPRSIHVHYSETMDGL 433
           G+  +     +A++   Y  + ++ S           +  +   +P S      E     
Sbjct: 5   GDRDKGKRPQMAKIAVDYASNPIFTSDNPRSENPHAIIEDMIQGVPNSDSYVVHENRRDA 64

Query: 434 FLFIQSSLVDGDVVVV--KS 451
             F  +    GDV+++  K 
Sbjct: 65  IRFAVNEAEAGDVILIAGKG 84


>gi|288925779|ref|ZP_06419710.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella buccae D17]
 gi|288337434|gb|EFC75789.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella buccae D17]
          Length = 347

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 20/114 (17%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA---PQEA-FFAIKGPHYDGHDFI-LH 59
           +T   +   ++G  I       V+  +     I    P    F A    +     FI   
Sbjct: 3   FTAKQIAAFVEGR-IEGDENATVSTFT----KIEEGAPGAISFLANP-KYTH---FIYET 53

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
           A    A +V+V+ D V     +   +  V D    + +L       SK   I I
Sbjct: 54  A----ASIVLVSED-VEIDKPVKATLIRVKDARDCVARLLQMY-EASKTKRIGI 101


>gi|209550176|ref|YP_002282093.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535932|gb|ACI55867.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 470

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 107/359 (29%), Gaps = 38/359 (10%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L S   
Sbjct: 82  PHWTVDLARAAGVDIVGDVELFVRERRAHAPDCPFIAITGTNGKSTTTALIAHILKSAGY 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG  +     P    + + E     +     L   + P   ++  + P 
Sbjct: 142 D----TQLGGNIGTAVLTLDPPKAGRYYVVECSSYQID----LAPTLNPSAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G +      +   D     L A         +    +   
Sbjct: 194 HLDRHGTMQHYADVKERLVAGSDV----AIVGVDDSHSALIADRVERADVKVVRISRRSV 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               +        Q+     L    ++ +    G H AQN    +     +    D    
Sbjct: 250 VASGIYAEGSRLIQAAGGAMLPFADLDGIQTLRGSHNAQNAAAAVAACLAVGVSADDIRA 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+ F   + R    +    +G    +++S   N  +   A+S   +I     G   A  
Sbjct: 310 GLASFPGLKHRM---QPVGQRGRVVFVNDSKATNADAAAPALSSYDRIYWIAGGLPKA-- 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLF 434
           G +  +                   I+  +L G         L  ++    S T++   
Sbjct: 365 GGITTLAPYFPR-------------IAKAYLIGEAAAEFAATLGEAVPYEISGTLERAV 410


>gi|301617975|ref|XP_002938407.1| PREDICTED: multiple epidermal growth factor-like domains protein
           11-like [Xenopus (Silurana) tropicalis]
          Length = 1082

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/282 (8%), Positives = 51/282 (18%), Gaps = 7/282 (2%)

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
             TG        +    +  S+       GS +   G           +   I   G   
Sbjct: 591 GWTGIHCDNLCNQGYWGSNCSMTCHCENGGSCSPEDGSCECAPGYRGALCQRICAAGFYG 650

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               +     V                   F  +           +G  +  +   N   
Sbjct: 651 HQCSQTCPQCVHFSGPCHHVTGHCDCLPGFFGPLCNQVCPSGRFGKGCAEICSCSNNATC 710

Query: 230 SFFE---LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHH 286
           +  +           +       FG               +E S  + + +        +
Sbjct: 711 NPVDGSCQCYPGWIGIDCSDECPFGLWGPDCSHTCNCHNEAECSAYDGECKCTPGWTGLY 770

Query: 287 GIGYHMAQNMLM-TLGIVSILTADVDTAIKA-LSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                 +         +           I    +      G     +C      +     
Sbjct: 771 CTQRCPSAFYGKDCANVCQCHNGADCDHITGQCTCRTGFTGNHCEQKCPPGTFGYGCRQL 830

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQ 386
               N A+                 R       M E+   ++
Sbjct: 831 CECLNNATCDHVTGTCYCNPGFKGIRCDQAALMMEELNPYTK 872


>gi|269978146|ref|ZP_06185096.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307701109|ref|ZP_07638134.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
 gi|269933655|gb|EEZ90239.1| UDP-N-acetylmuramate--alanine ligase [Mobiluncus mulieris 28-1]
 gi|307614104|gb|EFN93348.1| UDP-N-acetylmuramate--L-alanine ligase [Mobiluncus mulieris
           FB024-16]
          Length = 490

 Score = 38.3 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 106/364 (29%), Gaps = 38/364 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           ++A+ G+ GKTTT  ML+    ++    A        + +              + E   
Sbjct: 122 LLAVAGAHGKTTTSAMLS---KALWDVGADPSFAIGGVILEYGTGARLGRGRAFVIEADE 178

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
           S    + +      P + V+T I P HL ++   E    A  +    +   G I    DD
Sbjct: 179 SDGSFLNYA-----PLVEVLTNIEPDHLDHWGSREAFDQAFVDFTARIRPGGAIVACGDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNA--------DFQLRKWKQCSEQSWMEVQLQGKSM 281
           +    L  + H+      Y FG             + +L       +   M    +    
Sbjct: 234 AGIRRLAPRFHSGAALVSYGFGAPLPGAALVVALGEPRLGAGHAEVDLRVMRCHPEQLLF 293

Query: 282 EVVHHGIGYHMAQNMLMTLGIVSILTADVDT---AIKALSVFHPKEGRGKRYRCALNQGF 338
             V           +     + +    +         A            R    L +  
Sbjct: 294 HDVLRLSQGGKHYLLDAAAALGAAAALNECVGGIDFGAFCQSLSSFTGTGRRMQFLGEIG 353

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I + Y  +P  + A +     ++    G    ++     +   +++F  + A VLS 
Sbjct: 354 GVRIYDDYGHHPTEVAATLGAARDLA----GNGRLLVCFQPHLYSRTKTFASEFATVLSA 409

Query: 399 YNISHVWLSGFHVL-----------ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
                V + G +             A+ D +       +   M      + +    GD++
Sbjct: 410 A--DEVVVCGVYAARENPTDGADGDAIADLM--GEKGQFISDMYAAGDAVYNLAKPGDLL 465

Query: 448 VVKS 451
           +   
Sbjct: 466 LFLG 469


>gi|257462515|ref|ZP_05626927.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|317060170|ref|ZP_07924655.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
 gi|313685846|gb|EFS22681.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium sp.
           D12]
          Length = 433

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 96/296 (32%), Gaps = 37/296 (12%)

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
            D+ + EL    L       +   P+I+++T + P HL+ ++ +E+  + K  I +  EK
Sbjct: 140 YDYAVLELSSYQL----ENVYEFTPYISMVTNLTPDHLTRYANLEDYYNTKFHICQNQEK 195

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             + FL   D        K   L      S  + + AD  ++      +           
Sbjct: 196 ENSFFLFNIDHEE---VRKRETLMKGRKISLSRKQEADTCVKDGNILFQG---------- 242

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +    +    + N+  +L IV+        +          E    R       G  
Sbjct: 243 EKVMSVSELSLKGSHNLENSLFIVTAGKLLGLDSKIIRDFLRNTEPLEHRMERCFQYGKL 302

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             I++S   N  S K A+           G    V                 LA+V+   
Sbjct: 303 QFINDSKGTNIDSAKFALEAYPGCILICGGFDKKV-------------DLTPLADVIVKQ 349

Query: 400 NISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
            +  V+L G     +K  L      +  +H  +T++     ++      D  V+++
Sbjct: 350 -VKEVYLIGVIADKIKALLVDRNYQAERIHSLDTIENSLRDMKQRFTKEDQEVILL 404


>gi|325278082|ref|ZP_08143601.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Pseudomonas sp. TJI-51]
 gi|324096789|gb|EGB95116.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Pseudomonas sp. TJI-51]
          Length = 351

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA-FFAIKGPHYDGHDFILH 59
           M+   T   L +A+            + G++   +   P +  F A          ++ +
Sbjct: 1   MSVTMTLGQLAEALGATL-KGPEALQITGLAT-LQEAGPGQLTFLANPQYR----KYLDN 54

Query: 60  AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
             Q GA L+       A   S +     V D   A  +++     + KA
Sbjct: 55  C-QAGAVLL-----KAADAESFAGNALVVADPYLAYARISHLFDPKPKA 97


>gi|302528471|ref|ZP_07280813.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
 gi|302437366|gb|EFL09182.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Streptomyces sp.
           AA4]
          Length = 468

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 101/384 (26%), Gaps = 48/384 (12%)

Query: 97  KLAVAA--RLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLA 154
           +LA             + ITG+ GKTTT  ML   L +             ++G P  L 
Sbjct: 93  ELAWRIGQLREHPPAWLVITGTNGKTTTVGMLESILRAAGAD----AVACGNVGYP-VLD 147

Query: 155 RMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIF 214
            +         EL    L     +     P  +V+  +A  HL     +EE A+AK  + 
Sbjct: 148 AVRGGHQVLAVELSSFQLHWSSTIA----PDASVVLNLAEDHLDWHGSMEEYAAAKGRVH 203

Query: 215 EGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV 274
           +            DD +   +  +    G + I     +  A           ++++   
Sbjct: 204 QRSRAVVHNV---DDPWSTRIAEEHAPDGARRIGFVLDTPRAGELGLVEDLLVDRAFGAD 260

Query: 275 QLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCAL 334
                        +      N+   L   ++  A   +           E    R     
Sbjct: 261 PETSAEELAEIADVRPAGPHNLANALAAAALARAHGVSPAAVRKGLRAYEPAPHRAVEVA 320

Query: 335 NQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE 394
             G    +++S   NP +   ++     +     G+           G         +  
Sbjct: 321 EIGGVRYVNDSKATNPHAALGSLLAHESVVWIAGGQLK---------GASVDDLVAAVGG 371

Query: 395 VLSLYNISHVWLSGFHVLALKDALPRSIHVHYSET--------MDGLFLFIQSSLVDGDV 446
            L         L G     ++ AL R                 M        +    GDV
Sbjct: 372 RLRAA-----VLLGVDSPVIEAALARHAPDVPCNRLLPGDDEPMTAAVNAASALARPGDV 426

Query: 447 VVVK------------SSNSCGFY 458
           V++              +    F 
Sbjct: 427 VLLAPAAASLDMFRGYGARGDAFE 450


>gi|203288244|ref|YP_002223259.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
 gi|201085464|gb|ACH95038.1| UDP-N-acetylmuramate--alanine ligase [Borrelia recurrentis A1]
          Length = 486

 Score = 38.3 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 123/388 (31%), Gaps = 37/388 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            ++     L IPV    +V+    +++           I + GS GKTTT   L I   S
Sbjct: 106 PILLEAYELGIPVLSYPEVI---GEISKKYYS------IGVAGSHGKTTTAAFLGILFHS 156

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +      I   +         + +  + +  I E        + F      P I V+T I
Sbjct: 157 LGLQPNLILGSSVKN--LEDKSSLVGESNVFIAETCEYKGHFLSFS-----PDIIVLTNI 209

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  F   EE+     +    L+K G + +N D+     +K K        ++S G 
Sbjct: 210 DYEHVDFFKNYEEVEDIFLQYVNNLKKNGILIINADEINLFNIKNKII-RKDIRVFSVGF 268

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +  +DF++  ++               S+++       H   N  + L  + +   +   
Sbjct: 269 NSLSDFKIEHFEI---GDGFLKFDFLGSIDIRLKTPLIHNVLNFSIALLALKLFLEEHKK 325

Query: 313 AIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            +            +    +  +            +      K   S L  +    +GR 
Sbjct: 326 LVWNFDERIKIVARKYMGIKRRMEFIMEKDGVIYLDDYAHHPKEIESTLLGLKKFYDGR- 384

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SGFH------VLALKDALP 419
             VL  M      ++    +   VL   N+  + L                   L  +L 
Sbjct: 385 RIVLDFMPHTFTRTKVLFDEFVRVL--SNVDVLILHNIYLSVREDFDPKRLSRDLFLSLR 442

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             + +V++ E +     FI+  L   D+
Sbjct: 443 DLNQNVYFFEEVGDSVDFIKGLLKRNDL 470


>gi|217964242|ref|YP_002349920.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290893199|ref|ZP_06556186.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|254766008|sp|B8DHD7|MURC_LISMH RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|217333512|gb|ACK39306.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes HCC23]
 gi|290557181|gb|EFD90708.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J2-071]
 gi|307571190|emb|CAR84369.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes L99]
          Length = 447

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLSLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  +G+          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   K L  F   + R             +         +             V++   P
Sbjct: 283 EDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|42525886|ref|NP_970984.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
 gi|41815936|gb|AAS10865.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Treponema
           denticola ATCC 35405]
          Length = 476

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 SKA I+A+TGS GK++T   L   L  +       G+       PL+       
Sbjct: 105 SVFLSLSKAPILAVTGSKGKSSTVSALYYGLKKLGYNAFLGGNITVS---PLSFFEETSC 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL  S          L++P IA+IT I P HL+ +  +E+  + K  I+E +++
Sbjct: 162 DTPVVLEL-SSWQLADLKNKKLLKPKIAIITPIMPDHLNWYGTMEKYVADKKIIYENMDE 220

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIK 245
              +  N+DD + ++   ++ A    
Sbjct: 221 ADYLICNFDDGWGKIFAEETRANVFW 246


>gi|118496814|ref|YP_897864.1| UDP-3-O-[3-fatty acid] glucosamine N-acyltransferase [Francisella
          tularensis subsp. novicida U112]
 gi|194324505|ref|ZP_03058277.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella tularensis subsp. novicida FTE]
 gi|208780571|ref|ZP_03247910.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella novicida FTG]
 gi|254372178|ref|ZP_04987670.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. novicida GA99-3549]
 gi|118422720|gb|ABK89110.1| UDP-3-O-[3-fatty acid] glucosamine N-acyltransferase [Francisella
          novicida U112]
 gi|151569908|gb|EDN35562.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella novicida GA99-3549]
 gi|194321340|gb|EDX18826.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella tularensis subsp. novicida FTE]
 gi|208743546|gb|EDZ89851.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella novicida FTG]
          Length = 347

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 31/113 (27%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  ++G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIISGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKAAAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|307637699|gb|ADN80149.1| hypothetical protein hp908_1026 [Helicobacter pylori 908]
 gi|325996301|gb|ADZ51706.1| hypothetical protein hp2018_0993 [Helicobacter pylori 2018]
 gi|325997890|gb|ADZ50098.1| hypothetical protein hp2017_0989 [Helicobacter pylori 2017]
          Length = 339

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAG 66
            ++ ++   G         + N I +    +     F A      D H  I  A++ GA 
Sbjct: 5   VNEAVELSLGELQNTPSISYFNSIVLSLNKVQKGSLFAA-----KD-HALIPKALELGAY 58

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVA 101
            ++   +    +    +    + D+  +LN L   
Sbjct: 59  GILYTGEY--PLSDRDVAWIKLKDIEHSLNHLFKF 91


>gi|295098049|emb|CBK87139.1| folylpolyglutamate synthase/dihydrofolate synthase [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 422

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+   L+     +   + +   G      +  +          ++   +    +     
Sbjct: 336 KDIGGTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKGEIYSSVVSAWRAAMAEAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|46907836|ref|YP_014225.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|226224206|ref|YP_002758313.1| UDP-N-acetyl muramate-alanine ligase [Listeria monocytogenes
           Clip81459]
 gi|254824335|ref|ZP_05229336.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|254852227|ref|ZP_05241575.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|254931544|ref|ZP_05264903.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|254994071|ref|ZP_05276261.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes FSL
           J2-064]
 gi|300766118|ref|ZP_07076085.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|59798317|sp|Q71Z62|MURC_LISMF RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|259509776|sp|C1KVQ2|MURC_LISMC RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|46881105|gb|AAT04402.1| UDP-N-acetylmuramate--alanine ligase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876668|emb|CAS05377.1| Putative UDP-N-acetyl muramate-alanine ligase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605535|gb|EEW18143.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           R2-503]
 gi|293583099|gb|EFF95131.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes
           HPB2262]
 gi|293593569|gb|EFG01330.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           J1-194]
 gi|300513199|gb|EFK40279.1| UDP-N-acetylmuramate-alanine ligase [Listeria monocytogenes FSL
           N1-017]
 gi|332312046|gb|EGJ25141.1| UDP-N-acetylmuramate--L-alanine ligase [Listeria monocytogenes str.
           Scott A]
          Length = 447

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 51/387 (13%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L +PV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERALELGLPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   ++   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GAEYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFG 251
           I   H   F  ++++ +A   + + ++K      +                    I  FG
Sbjct: 171 IDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDD--------AELRKLTLDIPIIYFG 222

Query: 252 KSKNADFQLRKWKQCSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
             +  +FQ +   + +  +  +V  +G+          G H   N L  + +       V
Sbjct: 223 FGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPAYGDHNVLNALSVIALCDYEGLPV 282

Query: 311 DTAIKALSVFHPKEGRGKRYRC-----ALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
           +   K L  F   + R             +         +             V++   P
Sbjct: 283 EDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQP 342

Query: 366 HGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
           H   R    L    +   L+   ++ D+              +G   +A      +  H+
Sbjct: 343 HTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREK-------TGNLTIADLAHKTKGNHI 395

Query: 425 HYSETMDGLFLFIQSSLVDGDVVVVKS 451
              E  + L  +         V++   
Sbjct: 396 IKEEHTEELLKY------PEAVILFMG 416


>gi|167753943|ref|ZP_02426070.1| hypothetical protein ALIPUT_02228 [Alistipes putredinis DSM 17216]
 gi|167658568|gb|EDS02698.1| hypothetical protein ALIPUT_02228 [Alistipes putredinis DSM 17216]
          Length = 430

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 58/210 (27%), Gaps = 9/210 (4%)

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
                 +   ++  ++     K   +     G +   N+L  + ++ +L  +    I   
Sbjct: 228 CINHSTEGDFQKFSIQRHRDNKVFNLELDLTGNYQVHNILTAIAVIDLLHQETPLTISLR 287

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG- 376
           ++                         +      +      V  Q++         VLG 
Sbjct: 288 ALTEGMRTVASGTALQGRWQKLGDKPLTICDTGHNAHGIRYVAEQLAATPHRDLYCVLGF 347

Query: 377 -DMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFL 435
            +  ++  +   F  +   + +         +G        A    +    ++T+ G   
Sbjct: 348 VNDKDLSSVLPLFPKEARYIFTQPGNERALPAGKLAE---KAAAYGLRGEVADTVSGALA 404

Query: 436 FIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
             +    + D++ +  SN      +  +L 
Sbjct: 405 RAREMASEEDMIFIGGSNFV----VAEVLE 430


>gi|86137685|ref|ZP_01056262.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
 gi|85826020|gb|EAQ46218.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Roseobacter sp.
           MED193]
          Length = 465

 Score = 38.3 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 123/406 (30%), Gaps = 47/406 (11%)

Query: 62  QKGA---GLVVVNTDMVASIGSLSIPVFG--------VD-DVLGALNKL---AVAARLRS 106
           ++GA      +V +  +  +     PV          VD D+      L         + 
Sbjct: 60  RQGAFDDIAALVTSPGIPHLYPQPNPVIRAALEVGVPVDNDIGLFFASLPAQGWDMLDQ- 118

Query: 107 KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFE 166
              ++AITGS GK+TT  +L   L S+ +          +IG  +     P +    + E
Sbjct: 119 PPKVVAITGSNGKSTTVALLHHILESVGRD----SQMAGNIGRGVLDIDPPGEAGVVVLE 174

Query: 167 LGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLN 226
           L          L   + P +A++T ++P HL   +G+    +AK  +F        I   
Sbjct: 175 LSSYQ----TELARALTPDVAILTNLSPDHLDRHAGLGGYFAAKRRLFAEGGPDRAIIGV 230

Query: 227 YDDSFF---ELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
            +D        +   +    +  + S  K     +Q+   K    +     Q+    +  
Sbjct: 231 DEDEGLFLAGQMSQAASDDRVIRVASGRKLTGPGWQVFARKGFLSEMRKGRQVASIDLRQ 290

Query: 284 VHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLID 343
           +    G H  QN         +L         AL+ +     R    +          ++
Sbjct: 291 MTGLPGAHNHQNACAAYAAARVLGLAPRVIEAALATYPGLPHRS---QTVAEVAGVRYVN 347

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           +S   N  S   A+S    I     G                               +  
Sbjct: 348 DSKATNLDSAIKALSAFKNIRWICGGLEKEGGLGALTG---------------QTGAVRK 392

Query: 404 VWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++ G        A+   +      TM+       +    GDVV++
Sbjct: 393 AYVIGREAAGF--AMQLDVEAEVCTTMERAVACAVAEAEPGDVVLL 436


>gi|297300812|ref|XP_001096478.2| PREDICTED: zinc finger protein 33B [Macaca mulatta]
          Length = 808

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/298 (7%), Positives = 69/298 (23%), Gaps = 7/298 (2%)

Query: 97  KLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARM 156
           K     R+ S   +   T +  K         +            ++             
Sbjct: 442 KCGKFFRVTSHLKVHQRTHTGEKPFECLECGKSFCEKSNLTQHQRTHIGDKSYECNACGK 501

Query: 157 PVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSN-----FSGIEE--IASA 209
                  +    + H G   +  +       + + +      +     F+  E     S 
Sbjct: 502 TFYHKSLLTRHQIVHTGWKPYECYECGKTFCLKSDLTVHQRMHTGEKPFACPECGKFFSH 561

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           K+ + +                 ++   KS+       ++  K    +   + + Q S+ 
Sbjct: 562 KSTLSQHYRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTGEKPYECNECGKTFYQKSQL 621

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +  ++   G+     +        ++ L+                   S           
Sbjct: 622 TQHQIIHIGEKPYKCNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLIFHE 681

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            +    + +         ++ +S+       +            +     E+ +  +S
Sbjct: 682 RKHTGEKPYECSECGKSFSHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSELAKHQRS 739


>gi|226939683|ref|YP_002794756.1| Mpl [Laribacter hongkongensis HLHK9]
 gi|226714609|gb|ACO73747.1| Mpl [Laribacter hongkongensis HLHK9]
          Length = 459

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 68/460 (14%), Positives = 130/460 (28%), Gaps = 72/460 (15%)

Query: 11  LQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVV 70
           L+A+    I     G +         + P + F             I + V++G    ++
Sbjct: 42  LEALGIELIEGFEAGQLE-------RVQP-DIFV------------IGNVVKRGMP--LM 79

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              +   +   S P +  ++V      LA          ++A+ G+ GKTTT  ML   L
Sbjct: 80  EAILDRGLPYTSGPQWLAENV------LAGRW-------VLAVAGTHGKTTTSSMLAWIL 126

Query: 131 SSIK--------KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFL--TH 180
            +                       G P        +  F + E                
Sbjct: 127 EANGLAPGFLIGGIPENFAVSARLPGEP--AQEPGGESPFFVIEADEYDTAFFDKRSKFV 184

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P  A++  +   H   F+ +  I +    +   +  TG + +N  ++    +  +  
Sbjct: 185 HYHPRTAILNNLEFDHADIFADLPAIETQFHHLVRTVPGTGRLVVNGREASLARVLERGC 244

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
              ++T         A    +  K   +  +  +        V  + +G H   N +  +
Sbjct: 245 WTPVETFA-----APAGSGWQAGKADDDGHFDVLLDGNTVGRVRWNLMGEHNRLNAVAAV 299

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN---QGFFTLIDESYNANPASMKAAI 357
                       A  AL++F   + R +             F     +     A ++A +
Sbjct: 300 AAARHAGVRPQDACAALAMFANVKRRMEVKGSVNGVTVYDDFAHHPTAIATTVAGLRARV 359

Query: 358 SVLSQISPHGEGRRIAVLGDM-CEMGELSQSFHIDLAEVLSLYNISHVWLS--GFHVLAL 414
                ++          LG M  E+               SL     V+    G      
Sbjct: 360 GAARILAVLEPRSNTMKLGTMKAEL-------------PASLAQADRVFGYQGGLGWDLA 406

Query: 415 KDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
               P          +D L   + +    GD V+V  SN 
Sbjct: 407 AALAPLGSKAQSFGDLDALVAAVAAEAQPGDQVLV-MSNG 445


>gi|187735187|ref|YP_001877299.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
 gi|187425239|gb|ACD04518.1| UDP-N-acetylmuramate [Akkermansia muciniphila ATCC BAA-835]
          Length = 460

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 431 DGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
             +   +      GDV++V  SN  GF  +   LLE
Sbjct: 423 QEIVSAVCKKAQPGDVILV-MSNG-GFEGIHAKLLE 456


>gi|227485084|ref|ZP_03915400.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236917|gb|EEI86932.1| possible tetrahydrofolate synthase [Anaerococcus lactolyticus ATCC
           51172]
          Length = 424

 Score = 37.9 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 386 QSFHIDLAEVLSLYNISHVWL-SGFHVLAL------KDALPRSIHVHYSETMDGLFLFIQ 438
              H D+   ++      +      +  AL      ++A   +  +H  E     F F  
Sbjct: 338 DKDHKDIIRKIAGLADELIITHIDDNPRALDTQIIDEEAKAYASDIHVIENNKQAFEFSL 397

Query: 439 SSLVDGDVVVVKSS 452
               D D+V+   S
Sbjct: 398 KEAKDKDLVLWCGS 411


>gi|294648722|ref|ZP_06726182.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292825397|gb|EFF84140.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 453

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 60/416 (14%), Positives = 126/416 (30%), Gaps = 40/416 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +     +   +  +S P F  D VL                 ++ + G+
Sbjct: 67  VGNAMKRGIDAI--EYMLNEGLPYISGPQFLTDHVLQ-------------GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETNIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  +     +    +  +  +      +        +  ++      EV     G H   
Sbjct: 229 VLEQGCWTPVVR--TSLEPNDQAALSAELISADGSHFKVLENGKVIGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+     +   ++ A +ALS F   + R +          +    + +  +P +++
Sbjct: 287 NALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLGKVRGIEVY----DDFAHHPTAIE 342

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS---GF 409
             +    +     +         + E    +     H D     +      V      G 
Sbjct: 343 TTLDGARKRLGERKLW------AIIEPRSNTMRMGSHKDGLAHSARLA-DEVIWYQPEGL 395

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      S     S ++D +   + +   +GD VV+  SN  GF  L   L+
Sbjct: 396 DWDLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVI-MSNG-GFGGLHQKLI 449


>gi|104783185|ref|YP_609683.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Pseudomonas entomophila L48]
 gi|122402179|sp|Q1I636|LPXD_PSEE4 RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase
 gi|95112172|emb|CAK16899.1| UDP-3-O-[3-hydroxylauroyl] glucosamine N-acyltransferase
           [Pseudomonas entomophila L48]
          Length = 351

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 19/112 (16%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAP---QEA-FFAIKGPHYDGHDF 56
           M    T   L +A+            + G++     +      +  F A K        F
Sbjct: 1   MTVTMTLGQLAEALGATL-KGPEALQITGLAT----LQEAGSGQLSFLANKQYR----KF 51

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
           +  +    A  V++  +        +     V D   A  +++     + KA
Sbjct: 52  LESSQ---ASAVLLKAEDAEGFAGNA---LIVADPYLAYARISHLFDPKPKA 97


>gi|29653494|ref|NP_819186.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 493]
 gi|154707034|ref|YP_001425281.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161830659|ref|YP_001596104.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii RSA 331]
 gi|44888196|sp|Q83F17|MURC_COXBU RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029010|sp|A9KER2|MURC_COXBN RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|189029011|sp|A9NA45|MURC_COXBR RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|29540756|gb|AAO89700.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 493]
 gi|154356320|gb|ABS77782.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii Dugway
           5J108-111]
 gi|161762526|gb|ABX78168.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 331]
          Length = 465

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 121/369 (32%), Gaps = 30/369 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ML+ A           +G   N+   P  +          I E   
Sbjct: 111 IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNNSQTPARVGNGHY----FIAEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S           + P IAV+T I   HLS +      +     +  E   + G + L  D
Sbjct: 167 S-----DASFLFMHPDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLD 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +        I   +S           ++  Q      +    +   + V     
Sbjct: 222 DPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSL--FQIHSPQRKAPLTVKLSMP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N      I  ++  +    +K+L+ F   + R       +      LI E Y  
Sbjct: 280 GQHNALNATAVTAIADVVQMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  +KA ++      P        VL         ++    +   VL+  +   +  V+
Sbjct: 340 HPNEIKATLAAARAAWPER----RMVLVFQPHRYSRTRDLMTEFVSVLAETDWLVLLEVY 395

Query: 406 LSGFHVLALKDALP--------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +   D +          +    +   +  L   +Q      D+++++ + + G 
Sbjct: 396 SAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG- 454

Query: 458 YRLINLLLE 466
             ++  L++
Sbjct: 455 -SIVTALVQ 462


>gi|225872194|ref|YP_002753649.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium capsulatum ATCC 51196]
 gi|225792693|gb|ACO32783.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
           [Acidobacterium capsulatum ATCC 51196]
          Length = 347

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFILHAVQ 62
                L   + G   G      ++G++ I      P    F A          +     +
Sbjct: 1   MKLSVLAHQLGGVCTGED-DPEISGVAGI--EEAQPGHLTFVANP-------KYTAEVKK 50

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARL 104
             A  VVV+ D       +++P   V +   A  +       
Sbjct: 51  TRASAVVVSPDFPE----IALPALRVKNPDLAFARAIEVFYR 88


>gi|255573159|ref|XP_002527509.1| zinc finger protein, putative [Ricinus communis]
 gi|223533149|gb|EEF34907.1| zinc finger protein, putative [Ricinus communis]
          Length = 633

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 17/64 (26%)

Query: 29  GISIDSR--------SIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGS 80
           G+S  SR         +   + FFA+K         + +A + GA  V+V+ D+   + +
Sbjct: 87  GVSFKSRPGALPTFVLLDRGDCFFALK---------VWNAQKAGASAVLVSDDIEEPLIT 137

Query: 81  LSIP 84
           +  P
Sbjct: 138 MDTP 141


>gi|28211898|ref|NP_782842.1| dihydrofolate synthase [Clostridium tetani E88]
 gi|28204341|gb|AAO36779.1| folylpolyglutamate synthase [Clostridium tetani E88]
          Length = 431

 Score = 37.9 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 107/336 (31%), Gaps = 29/336 (8%)

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                 +    I   + L     ++D+ I E+    LG     T++++P +++IT+I+  
Sbjct: 112 MGWGYPTEFEIITCIMFLYYSKKEIDYAIIEV---GLGGKSDSTNVIKPLVSIITSISYD 168

Query: 196 HLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
           H+S     IEEIAS KA I    ++   + L   +     +  K+       +    ++ 
Sbjct: 169 HVSILGNTIEEIASEKAGII---KENVPVILYPQEEGAYKVIEKTCMEKDSKLIYIDENS 225

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
                           +++++      +V    +G H   N  + +  +  L        
Sbjct: 226 IYHI--PNEDFNKSYQFLQIKTNKDEYKVQLSLLGSHQRMNCAVAIYAIEQLMQIGIKIK 283

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
           K   +      +       L      +ID ++N +       I+ L +           +
Sbjct: 284 KEDILRGLSNVQWPGRLEILKTNPLVVIDGAHNLD------GITKLKESIKQYFRYNKLI 337

Query: 375 LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS------GFHVLALKDALPR-SIHVHYS 427
           L       +  Q     +  + +      V         G     L   +   + +    
Sbjct: 338 LIIGILTDKDIQKMVRTITPIAN-----KVIAVTPNSYRGKTSQELIKTIENYNKNCEAL 392

Query: 428 ETMDGLFLFIQSSLVDGDVVVVKSSNSC--GFYRLI 461
           E     ++   +   + D++++  S        ++I
Sbjct: 393 EDYKEAYVKALAYCDEDDMILICGSLYMIGDMRKII 428


>gi|47779260|gb|AAT38528.1| MurD [Bartonella bacilliformis]
          Length = 430

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 103/371 (27%), Gaps = 35/371 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+     ++  +      V      L +             IAITG+ GK+TT  +L  
Sbjct: 47  VVDKARQENVEVIGDIELFVRARNHFLQQYDFC---DWDVPFIAITGTNGKSTTTTLLVH 103

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  +            ++G  +   +  V     + E     +     L   ++P I +
Sbjct: 104 LLEQMGYDVQMG----GNVGTAILTLKPFVKKRIYVIECSSFQID----LAPSLQPTIGI 155

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
           +  + P H+         A  K  +            +      ++ L  + H +   + 
Sbjct: 156 LLNLTPDHIDRHGTFAHYAQGKGLLVSRASHALISVDDAACKTLYQQLVDEKHQVEAISK 215

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F ++       + +             Q   +  +        + N    L +++ L 
Sbjct: 216 KHFVENGFYVEGTQLFSVRHG--------QRHMLVDLAAVTSLRGSHNAQNALMVLATLQ 267

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A   T            G   R +     G    I++S   N  +   A++    I    
Sbjct: 268 ALKITDPHLEKHLVSYAGLAHRMQQVRKIGSVLFINDSKATNADASAVALATFDDIFWIL 327

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G+     G +  + +                 I   +L G         +  S  +  S
Sbjct: 328 GGKAKE--GGIGALRKFFP-------------KIRKAYLIGEAAEDFVRVIGSSFPISMS 372

Query: 428 ETMDGLFLFIQ 438
            T++       
Sbjct: 373 LTLENAVREAA 383


>gi|289434885|ref|YP_003464757.1| hypothetical protein lse_1520 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171129|emb|CBH27671.1| murC [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 447

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 23/139 (16%)

Query: 72  TDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS 131
            + +     L IPV         L +L          T IAITGS GKT+T  +L+  + 
Sbjct: 74  HEEIERAMELGIPVIR---YHKFLGQLIDGY------TSIAITGSHGKTSTTGLLSHVVG 124

Query: 132 SIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITT 191
           +I+ T   IG                   D+   E        + +     +P  A++T 
Sbjct: 125 AIRPTSYLIGDGTGSGTK---------GADYFALEACEYQRHFLAY-----KPTYAIMTN 170

Query: 192 IAPAHLSNFSGIEEIASAK 210
           I   H   F  ++++ +A 
Sbjct: 171 IDWDHPDYFKSVDDVFNAF 189


>gi|169344117|ref|ZP_02865100.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
 gi|169297728|gb|EDS79827.1| Mur ligase family protein [Clostridium perfringens C str. JGS1495]
          Length = 553

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 119/372 (31%), Gaps = 40/372 (10%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKKT----------YACIGSYNNHIGVPLTLARMP 157
             I++ITG+ GKT+T  ++     ++                            +  ++ 
Sbjct: 156 IPIVSITGTNGKTSTSRLIYKGFENLGYFSGLAMTGGIIINNEFVKKGDTTGFYSAKKVL 215

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL--SNFSGIEEIASAKAEIFE 215
            +    +  L  +  G +R         +A+IT++A  H+       I ++   K     
Sbjct: 216 TNPQVEVGVLETARGGILRKGLGFKNSKVAIITSLAEDHIGVDGIKDINDLLDIKLITTR 275

Query: 216 GLEKTGTIFLNYDDSFFELLKAKSH------ALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
            +   G + +  +   +E+L+ K +                   K A F   +     + 
Sbjct: 276 EVLPEGKVIIKAEPKLYEVLQTKENLVLFNSKKNKYIEKHMKNDKEAWFVEDENVIFFDG 335

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
               +    K  +  H+G       N+L+++  +  +  ++   + +L            
Sbjct: 336 KDKNIISNIKDFKFTHNGNSKTNINNILVSIAAIYEVHKNLKEVVDSLKNIECDVYNNIG 395

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
            +  +    F +I + Y  NP   +    + + I  +       ++  +   G+    + 
Sbjct: 396 RQNIIELENFKIILD-YGHNPEVFEELFYLANNIKRNK------IISIVSSPGDRLDEYI 448

Query: 390 IDLAEVLSLYNISHVWLS------GFHVLALKDALPRSIH------VHYSE--TMDGLFL 435
            +L + ++  N   + +       G   L + + +   I+      V        +    
Sbjct: 449 KELGK-IAGKNSDTIIIKETFDRRGREELEITNLIKSGINEIENKSVEVLSIIDEEEAIK 507

Query: 436 FIQSSLVDGDVV 447
              S   +GD++
Sbjct: 508 KAISMAKEGDII 519


>gi|332162416|ref|YP_004298993.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|318606501|emb|CBY27999.1| dihydrofolate synthase; Folylpolyglutamate synthase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325666646|gb|ADZ43290.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. palearctica 105.5R(r)]
 gi|330863728|emb|CBX73829.1| bifunctional protein folC [Yersinia enterocolitica W22703]
          Length = 422

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 57/203 (28%), Gaps = 17/203 (8%)

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +   +   W+     S+ + Q     +          +    L        +      ++
Sbjct: 219 HLYQRDIAWQFSQHGSFDQPQNGWNWLCGDRQLNDLPLPNVPLANAATALAVLHYSGLSL 278

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
               +    +      R  +      LI +    NP + +     L+Q+    +G+  AV
Sbjct: 279 SEDVIRQGLQAASLPGRFQIISEQPLLILDV-AHNPHAARYLTDKLAQLP--KQGKVRAV 335

Query: 375 LGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSET 429
           +G + +          D+   L+     +   + +   G    + +              
Sbjct: 336 VGMLSD---------KDIGGTLACLSEQVDKWYCAPLEGPRGASAEQLAEHLAQSRQFSD 386

Query: 430 MDGLFLFIQSSLVDGDVVVVKSS 452
           ++  +          DVV+V  S
Sbjct: 387 VETAWRQAMQDAEPQDVVIVCGS 409


>gi|315223691|ref|ZP_07865541.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga ochracea F0287]
 gi|314946266|gb|EFS98265.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga ochracea F0287]
          Length = 339

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 22/117 (18%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE----AFFAIKGPHYDGHDFI--L 58
           +T   +   + G   G  PQ  V  +S     I        +F A     +    FI   
Sbjct: 3   FTALQIANVLGGEVEGN-PQIEVYKLS----KIEEGSEGSISFLANPKYKH----FIYTT 53

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            A      +V+VN D  A    +S  +  VDD   A  KL +    + K   + I  
Sbjct: 54  QA-----SIVIVNKDFEAE-DKISATLVRVDDAYAAFTKL-LEFYNQVKMNKVGIEQ 103


>gi|90407935|ref|ZP_01216109.1| hypothetical sensor protein [Psychromonas sp. CNPT3]
 gi|90310949|gb|EAS39060.1| hypothetical sensor protein [Psychromonas sp. CNPT3]
          Length = 545

 Score = 37.9 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 71  NTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIAL 130
              +   I + ++P F   +   AL  +    R  ++A ++AIT ++G      +     
Sbjct: 199 QAKLALDIANKTLPYFR-KNTREALTSVCNIIRQETQADVVAITDTLGVLAYTGVGAEHY 257

Query: 131 SSIKKTYACIGSYNNHIGVPLTLARMPVDVDF 162
            + ++    +       G  +    +      
Sbjct: 258 FNSERKIGKMTQQAVDSGKQIISNNLKTQAFH 289


>gi|257459539|ref|ZP_05624648.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268]
 gi|257442964|gb|EEV18098.1| Mur ligase middle domain protein [Campylobacter gracilis RM3268]
          Length = 592

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/110 (12%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
            +ID+S+N N + M  +  ++        G ++ +   + E    ++  +  LA  +   
Sbjct: 483 IIIDDSFNGNLSGMLQSYELMRSY----GGHKVIITPGIVE---STREDNETLAAKIDKI 535

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                 ++G     +  +          +    L   +  +   GD+++ 
Sbjct: 536 -FDLAIITGELNSEVLQSRIDPKKTIVLKDKRDLQRVLSENTHSGDLILF 584


>gi|126323909|ref|XP_001377857.1| PREDICTED: similar to KIAA0692 protein [Monodelphis domestica]
          Length = 983

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 15/60 (25%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLEEFP 469
           D L R+  +H  E        ++         ++K S    F       +    + + FP
Sbjct: 189 DILTRNERIHVYEDKKEALQAVK---------MIKGSRFKAFSNREDAEKFAKGICDYFP 239


>gi|86146879|ref|ZP_01065198.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           sp. MED222]
 gi|85835331|gb|EAQ53470.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           sp. MED222]
          Length = 343

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 17/120 (14%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M  L T  +L     G   G      V+ ++ +D          F      +     +  
Sbjct: 1   MKNL-TLAELATITGGELHGDGA-VTVSAVAPMD--KAQEGNITFL----SNV---KYSK 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVG 118
           H     A  ++V         +    V  V D   A  K+A  A   + A    I  S  
Sbjct: 50  HLGDCKASAIMVKESERELCKTN---VIVVSDPYVAFAKVA-QALDTTPAPAAGIADSAS 105


>gi|299772109|ref|YP_003734135.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
 gi|298702197|gb|ADI92762.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Acinetobacter sp. DR1]
          Length = 457

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 123/419 (29%), Gaps = 36/419 (8%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   V         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAV-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETHIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +        +    +  ++        +        +  ++    + EV     G H   
Sbjct: 229 VLEMGCWTPVIR--TSLEANEKAALSAELISIDGSHFKVLENGNAAGEVKWTMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+     +   ++TA +ALS F   + R +          +    + +  +P ++ 
Sbjct: 287 NALATIAAAQHVGVTLETACEALSNFGGVKRRMELLGTVNGIEVY----DDFAHHPTAID 342

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS---GFHV 411
             +      +    G R            +    H D     +      V      G   
Sbjct: 343 TTLDG----ARKRLGERRLWAIIEPRSNTMRMGSHKDGLAHSARLA-DDVIWYQPEGLDW 397

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFPA 470
                    S     S ++D +   I +   +GD VV+  SN  GF  L   L+    A
Sbjct: 398 DLQPVIAAASNRAQVSRSLDEIIERIVNEAGEGDAVVI-MSNG-GFGGLHQKLMSALKA 454


>gi|256820582|ref|YP_003141861.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Capnocytophaga ochracea DSM 7271]
 gi|256582165|gb|ACU93300.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase
           [Capnocytophaga ochracea DSM 7271]
          Length = 339

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 22/117 (18%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQE----AFFAIKGPHYDGHDFI--L 58
           +T   +   + G   G  PQ  V  +S     I        +F A     +    FI   
Sbjct: 3   FTALQIANVLGGEVEGN-PQIEVYKLS----KIEEGSEGSISFLANPKYKH----FIYTT 53

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITG 115
            A      +V+VN D  A    +S  +  VDD   A  KL +    + K   + I  
Sbjct: 54  QA-----SIVIVNKDFEAE-DKISATLVRVDDAYAAFTKL-LEFYNQVKMNKVGIEQ 103


>gi|56707440|ref|YP_169336.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110669911|ref|YP_666468.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis FSC198]
 gi|224456520|ref|ZP_03664993.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis MA00-2987]
 gi|254370867|ref|ZP_04986872.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis FSC033]
 gi|254874277|ref|ZP_05246987.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis MA00-2987]
 gi|81597951|sp|Q5NI06|LPXD1_FRATT RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
          N-acyltransferase 1
 gi|119371424|sp|Q14JF8|LPXD1_FRAT1 RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine
          N-acyltransferase 1
 gi|56603932|emb|CAG44919.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis SCHU S4]
 gi|110320244|emb|CAL08302.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis FSC198]
 gi|151569110|gb|EDN34764.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis FSC033]
 gi|254840276|gb|EET18712.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158582|gb|ADA77973.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis NE061598]
          Length = 347

 Score = 37.9 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  + G++                        +   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIITGLT------------------------YAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKATAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|319944700|ref|ZP_08018964.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
 gi|319741949|gb|EFV94372.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Lautropia mirabilis
           ATCC 51599]
          Length = 552

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G     L+ AL    + +  +  MD            GDVV++
Sbjct: 473 LIGRDAPILRAALADTGVALEDAADMDAAVRACARLAQAGDVVLL 517


>gi|294054896|ref|YP_003548554.1| doubled CXXCH domain protein [Coraliomargarita akajimensis DSM
           45221]
 gi|293614229|gb|ADE54384.1| doubled CXXCH domain protein [Coraliomargarita akajimensis DSM
           45221]
          Length = 457

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 65/348 (18%), Gaps = 31/348 (8%)

Query: 39  PQEAFFAIKGPHYDGHDFILHA----------VQKGAGLVVVN-TDMVASIGSLSIPVFG 87
           P+E F  + G    GH  I  A          V++ A               + S PV  
Sbjct: 30  PEEIF--MPGETTHGHHQIEMACSVCHTTGEGVKQDAC---TQCHAEELERVNDSHPVIK 84

Query: 88  VDDVLGA-------LNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACI 140
             D   A         K     R      +    G +G T   +           +    
Sbjct: 85  FKDPRNASRLEQIEATKCITCHREHQPELV----GEMGVTLPTDYCYHC-HQEIASERPS 139

Query: 141 GSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNF 200
                             D           HL E  F    +         +        
Sbjct: 140 HEGMGFDTCATAGCHNFHDNTALYERFLADHLDEPNFKDLALTRARDFYDDLESVKGEPL 199

Query: 201 SGIEEIASAKAEIFEGLEKTGTIFLNY---DDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
              +       E    +    +   +     +         S    +  +   G      
Sbjct: 200 GKEDADMPDSVEFTHRILHDWSTTAHAAVGVNCTDCHQVEDSETKLLSWMDQPGYVNCQK 259

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
               + K   E        QG S             +   + L   S  ++      KA 
Sbjct: 260 CHEHETKGFLEGRHGMRLAQGMSPMTPGMARIPMRPEAAHLELDCASCHSSHRFNTRKAE 319

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP 365
                     +      N   F       N               +  
Sbjct: 320 VDACLNCHNDEHSVSYKNSLHFQTFRSELNGTAPENSGVSCATCHMPR 367


>gi|153207176|ref|ZP_01945955.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165918361|ref|ZP_02218447.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212219386|ref|YP_002306173.1| UDP-N-acetylmuramate--L-alanine ligase [Coxiella burnetii
           CbuK_Q154]
 gi|226706319|sp|B6J5K2|MURC_COXB1 RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|120576837|gb|EAX33461.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165917867|gb|EDR36471.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii RSA 334]
 gi|212013648|gb|ACJ21028.1| UDP-N-acetylmuramate--alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 465

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 64/369 (17%), Positives = 121/369 (32%), Gaps = 30/369 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIK-KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           IA+ G+ GKTTT  ML+ A           +G   N+   P  +          I E   
Sbjct: 111 IAVAGAHGKTTTSGMLSHAFVEANLDPTFMVGGVLNNSQTPARVGNGHY----FIAEADE 166

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYD 228
           S           + P IAV+T I   HLS +      +     +  E   + G + L  D
Sbjct: 167 S-----DASFLFMHPDIAVVTNIDADHLSTYDGDFNRLKQTYIQFLEQTAQDGVVVLCLD 221

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
           D     +        I   +S           ++  Q      +    +   + V     
Sbjct: 222 DPILREIAPLLSRRVITYGFSSDAQYRVVDYCQQGIQSL--FQIHSPQRKAPLTVKLSMP 279

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNA 348
           G H A N      I  ++  +    +K+L+ F   + R       +      LI E Y  
Sbjct: 280 GQHNALNATAVTAIADVVRMNEPALLKSLADFPGVDRRFTIRGEMILPKGNALIIEDYGH 339

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVW 405
           +P  +KA ++      P        VL         ++    +   VL+  +   +  V+
Sbjct: 340 HPNEIKATLAAARAAWPER----RMVLVFQPHRYSRTRDLMTEFVSVLAETDWLVLLEVY 395

Query: 406 LSGFHVLALKDALP--------RSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF 457
            +G   +   D +          +    +   +  L   +Q      D+++++ + + G 
Sbjct: 396 SAGEMPIPGADGMALIKMMSNGMAQKTTFVPLLQNLPETLQKLSQPNDIIILQGAGNIG- 454

Query: 458 YRLINLLLE 466
             ++  L++
Sbjct: 455 -SIVTALVQ 462


>gi|300776442|ref|ZP_07086300.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Chryseobacterium gleum ATCC 35910]
 gi|300501952|gb|EFK33092.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Chryseobacterium gleum ATCC 35910]
          Length = 346

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 25/106 (23%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEAFFAIK-GPHYDGH-DFILH--- 59
           +T   +   I G  IG      + G+S              I+ G    GH  FI     
Sbjct: 6   FTASQIASFIDGKIIG-DENALITGVS-------------PIENGES--GHLSFIAQDRF 49

Query: 60  ---AVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                     +++V+  ++      +  +  V D   +   L    
Sbjct: 50  SHFLDSSKCSVIIVSEKLLEK-NHYNPTLIVVKDAYLSFQILMNLY 94


>gi|15227765|ref|NP_179876.1| serine carboxypeptidase S10 family protein [Arabidopsis thaliana]
 gi|75100032|sp|O81009|SCP12_ARATH RecName: Full=Serine carboxypeptidase-like 12; Flags: Precursor
 gi|3445209|gb|AAC32439.1| putative serine carboxypeptidase I [Arabidopsis thaliana]
 gi|330252279|gb|AEC07373.1| serine carboxypeptidase-like 12 [Arabidopsis thaliana]
          Length = 435

 Score = 37.9 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 30/324 (9%), Positives = 64/324 (19%), Gaps = 26/324 (8%)

Query: 65  AGLVVVNTDMVASIGSLSIPVF-------GVDDVLGALNKLAVAARLRSKATIIAITGSV 117
           A ++ ++  + A      IP+         V ++   L K        S     A   S 
Sbjct: 118 ANIIFLDQPIGAGFSYSRIPLIDTPSDTGEVKNIHEFLQKWLSKHPQFSSNPFYASGDSY 177

Query: 118 GKTTTKEMLTIALSSIKKTYACIGSYNNHI-GVPLTLARMPVDVDF--------GIFELG 168
                  ++               +   +I G P+T   +  +              EL 
Sbjct: 178 SGMIVPALVQEISKGNYICCKPPINLQGYILGNPITYFEVDQNYRIPFSHGMALISDELY 237

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S   + +     V P       +           +E+        +    +   FL   
Sbjct: 238 ESIRRDCKGNYFNVDPRNTKCLKLVE---EYHKCTDELNEFNILSPDCDTTSPDCFLYPY 294

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRK--WKQCSEQSWMEVQLQGKSMEVVHH 286
                 +  +S    +    S            +  + +    S         S      
Sbjct: 295 YLLGYWINDESVRDALHVNKSSIGKWERCTYQNRIPYNKDINNSIPYHMNNSISGYRSLI 354

Query: 287 GIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY 346
             G H      +                     + P   + +                  
Sbjct: 355 YSGDHDLVVPFLATQAWIKSLNYSIIHE-----WRPWMIKDQIAGYTRTYSNKMTFATVK 409

Query: 347 NANPASMKAAISVLSQISPHGEGR 370
            +   +                G 
Sbjct: 410 GSGHTAEYKPNETFIMFQRWISGH 433


>gi|257092210|ref|YP_003165851.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257044734|gb|ACV33922.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 455

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 406 LSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
           L G   LA+   L    + + +   M     +  +    GD V++
Sbjct: 379 LIGRDALAMAAILEGCQVPLQHCVDMAEAVRWCAAQARAGDAVLL 423


>gi|195941037|ref|ZP_03086419.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Escherichia coli O157:H7 str. EC4024]
          Length = 390

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+   L+     +   + +   G      +  +          ++   +    +     
Sbjct: 304 KDIGGTLACMESVVDSWYCAPLEGPRGATAEQLMEHLGKGEIYSSVVSAWRAAMAEAKPE 363

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 364 DTVLVCGS 371


>gi|328947389|ref|YP_004364726.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
 gi|328447713|gb|AEB13429.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Treponema
           succinifaciens DSM 2489]
          Length = 531

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 55/149 (36%), Gaps = 6/149 (4%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                 +KA IIA+TGS GK++T   L+  L+         G+       PL+       
Sbjct: 119 SIFLRFTKAPIIAVTGSKGKSSTVSALSYGLNQAGFKCFLGGNITVS---PLSFLEKTDG 175

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL  S          L++P I++IT I P H + +  ++     K  IF   +K
Sbjct: 176 TTPVVLEL-SSWQLADLRGRKLLKPKISIITKIVPDHQNWYGDMDSYVEDKKLIFADQDK 234

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIY 248
                L  D      LK  +        +
Sbjct: 235 NDFTIL--DFDEDNYLKETASPKRGCRCW 261


>gi|309750460|gb|ADO80444.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae R2866]
          Length = 453

 Score = 37.9 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 90/314 (28%), Gaps = 17/314 (5%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFAVFH 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A      ++ +     G G RI  L +             D+A  L
Sbjct: 323 NGITVYDDFAHHPEA---ILATLTALRDKVGGGVRILALLEPRSNTMKMGVHKDDIAPAL 379

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +   +         + D   + +   +++  +D L   I +     D ++V  SN  
Sbjct: 380 GRADAVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSNGS 438

Query: 456 GFYRLINLLLEEFP 469
            F  +   +L++  
Sbjct: 439 -FGGIHQKILDKLK 451


>gi|148981143|ref|ZP_01816305.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Vibrionales bacterium SWAT-3]
 gi|145960970|gb|EDK26295.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Vibrionales bacterium SWAT-3]
          Length = 343

 Score = 37.9 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M  L T  +L     G   G      V+ ++ +D          F      +     +  
Sbjct: 1   MKTL-TLAELATITGGELHGDGT-VTVSAVAPMD--KAQEGNITFL----SNV---KYSK 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           H     A  V+V         +    V  V D   A  K+A 
Sbjct: 50  HLGDCKASAVMVKESERELCKTN---VIVVSDPYVAFAKVAQ 88


>gi|332525742|ref|ZP_08401889.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
 gi|332109299|gb|EGJ10222.1| cyanophycin synthetase [Rubrivivax benzoatilyticus JA2]
          Length = 861

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 53/378 (14%), Positives = 103/378 (27%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSI------------KKTYACIGSYNNHIGVPLTLAR 155
             ++A+TG+ GKTT   ++    ++                   I S +           
Sbjct: 469 IPVVAVTGTNGKTTVSRLIAHLFNAAGYKVGMTNTDGVWVDGHQIDSGDCSGPKSARNVL 528

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
              D +  + E      G +R      R  +AV+T +        + I   E++A  K  
Sbjct: 529 AHPDTEAAVLETA--RGGMLREGLGFDRCQVAVVTNVGAGDHLGLNYITTVEDLAVLKRV 586

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQ-LRKWKQCSEQSW 271
           I + + ++G   LN  D     +        I              +         +   
Sbjct: 587 IVQNVAESGYAVLNAADPITLQMAQHCPGGVILFAVDGHLPAMVAHRAQGGRTVFVDGDA 646

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA-------IKALSVFHPKE 324
           +          V    +       +   +       A               L+ F    
Sbjct: 647 IVAVNGSARARVPLREVPLTRNGTIGFQVENALAAVAAAWGCGLSFDAVSAGLASFVNDA 706

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    ++    T+I + Y  N  +M+A +  +  +        I+  GD  +    
Sbjct: 707 HNAPGRFNVMDYRGATVIAD-YGHNADAMRALVGAVEAMPAQRRSVVISAAGDRRDEDIR 765

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            Q+        +       V L           G  +  L++ L  +      E + G  
Sbjct: 766 EQT-------QILGAAFDEVLLYQDAAQRGRADGEVIALLREGLRGAPRTRRVEEIHGEF 818

Query: 433 -LFLFIQSSLVDGDVVVV 449
                   SL  GD+ +V
Sbjct: 819 VAIDQALESLQPGDLCLV 836


>gi|297623832|ref|YP_003705266.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
 gi|297165012|gb|ADI14723.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Truepera
           radiovictrix DSM 17093]
          Length = 450

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 89/332 (26%), Gaps = 35/332 (10%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                   A I+ ITG+ GKTT    L+  L+         G+      V   LA +   
Sbjct: 86  EWVYRTVDAPILGITGTAGKTTVTRWLSHTLTLAGLDAPAGGN------VDPALAAVAAP 139

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + EL    L         + P +AV+  +   HL     +    +AK  +   L  
Sbjct: 140 GRVLVTELSSFQL----ERCPSLHPRVAVVLNLGRDHLDRHGSLAAYHAAKKRLIAHLTP 195

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
             T   N+DD         S A              +               + +  +  
Sbjct: 196 EDTFVYNHDDPLVRAWAEASPAR---------TWGFSAAPTPGSAAHLADGMLTLHGRPL 246

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
                    G H   N L      +      +     L  F    GR             
Sbjct: 247 VAVRALQLTGQHHRLNALAVALAAAAWGLGDEAIRAGLESFSGVPGRYSV---VGEVAGV 303

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S      +++AA++             + +LG     G+   +   +L E L   
Sbjct: 304 RFVEDSIATRTLAVQAALAA-------TPAPVVWLLG-----GQDKGASFAEL-EALVRD 350

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
            +      G    A    L      H     D
Sbjct: 351 RVVLALCFGEAGPAFAAQLSAWTETHVIPDRD 382


>gi|153951744|ref|YP_001398557.1| lysyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
 gi|166229803|sp|A7H4X7|SYK_CAMJD RecName: Full=Lysyl-tRNA synthetase; AltName: Full=Lysine--tRNA
           ligase; Short=LysRS
 gi|152939190|gb|ABS43931.1| lysyl-tRNA synthetase [Campylobacter jejuni subsp. doylei 269.97]
          Length = 501

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/64 (15%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETM--DGLFLFIQSSLVDGDVV 447
            +    +    +  + ++G  + A  +    ++ +++S+    + L+  ++ +L  GD+V
Sbjct: 53  DESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTILKKNLEAGDIV 112

Query: 448 VVKS 451
           +VK 
Sbjct: 113 LVKG 116


>gi|226952812|ref|ZP_03823276.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|226836433|gb|EEH68816.1| UDP-N-acetylmuramate-alanine ligase [Acinetobacter sp. ATCC 27244]
          Length = 453

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 57/416 (13%), Positives = 123/416 (29%), Gaps = 40/416 (9%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
           + +A+++G   +         + +  +P             LA          ++ + G+
Sbjct: 67  VGNAMKRGIDAI-------EYMLNEGLPYISGP------QFLADHVLQ--GKHVLGVAGT 111

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM--SHLGE 174
            GKTTT  ML   L          G     + +  + +       +   E     S   +
Sbjct: 112 HGKTTTTTMLAWVLDQAGLN---PGFLIGGVPLGFSESARLGGGKYFCVEADEYDSAFFD 168

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            R       P  A++  +   H   F  +  I      +   +   G I     ++  + 
Sbjct: 169 KRSKFVHYHPKTAILNNLEFDHADIFDDLAAIQKQFHHLVRTIPSEGRIIAPITETNIDE 228

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
           +  +     +    +  +  +      +        +  ++      EV     G H   
Sbjct: 229 VLEQGCWTPVVR--TSLEPNDQAALSAELISADGSHFKVLENGKVIGEVKWSMTGQHSVA 286

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
           N L T+     +   ++ A +ALS F   + R +          +    + +  +P +++
Sbjct: 287 NALATIAAAQHVGVSIEQACEALSNFGGVKRRMELLGTVRGIEVY----DDFAHHPTAIE 342

Query: 355 AAISVLSQISPHGEGRRIAVLGDMCEMGELSQSF--HIDLAEVLSLYNISHVWLS---GF 409
             +    +     +         + E    +     H D     +      V      G 
Sbjct: 343 TTLDGARKRLGERKLW------AIIEPRSNTMRMGSHKDGLAHSARLA-DEVIWYQPEGL 395

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
                      S     S ++D +   + +   +GD VV+  SN  GF  L   L+
Sbjct: 396 DWDLQPVIAASSNKAEVSRSLDEIIARVVNEAGEGDAVVI-MSNG-GFGGLHQKLI 449


>gi|68248734|ref|YP_247846.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
 gi|68056933|gb|AAX87186.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Haemophilus influenzae 86-028NP]
          Length = 452

 Score = 37.9 bits (86), Expect = 3.9,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 91/314 (28%), Gaps = 18/314 (5%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFAVFH 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A     ++ L+ +     G RI  + +             D+A  L
Sbjct: 323 NGITVYDDFAHHPEA----ILATLTALRDKVGGVRILAVLEPRSNTMKMGVHKDDIAPAL 378

Query: 397 SLYNISHVWLSGFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              +   +         + D   + +   +++  +D L   I +     D ++V  SN  
Sbjct: 379 GRADAVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSNGS 437

Query: 456 GFYRLINLLLEEFP 469
            F  +   +L++  
Sbjct: 438 -FGGIHQKILDKLK 450


>gi|166365487|ref|YP_001657760.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
 gi|166087860|dbj|BAG02568.1| cyanophycin synthetase [Microcystis aeruginosa NIES-843]
          Length = 877

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 60/378 (15%), Positives = 116/378 (30%), Gaps = 43/378 (11%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLAR 155
           S+  I+AITG+ GKTTT  +++       K                        P + + 
Sbjct: 486 SRVPILAITGTNGKTTTSRLISHICRQTGKVVGFTTTDGVYIDDYLVEKGDNTGPYSASM 545

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAH--LSNFSGIEEIASAKAEI 213
           +  D    I  L  +  G +R      +  + V+  +A  H  + +   IE++A  K+ +
Sbjct: 546 ILKDPTVEIAVLETARGGILRSGLAFNQCDVGVVLNVAADHLGIGDIDTIEQMAKVKSVV 605

Query: 214 FEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADF---------QLRKWK 264
            E +   G   LN DD     +  K          S       D              + 
Sbjct: 606 AEVVSAEGYAVLNADDPLTVGMAEKVKGRVAYFSMSPDNPIIHDHIRRGGMAAIYENGYL 665

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
              E  W     +  ++ V   G+   M  N L       +   D++   + +  F P  
Sbjct: 666 SILEGEWTLRIEEAVNIPVTMQGMAPFMIANALAACLATFVQGIDIELIRQGVRTFKPSV 725

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            +        + G    + +  +       A    +     +  G ++ V+G     G+ 
Sbjct: 726 AQTPGRMNLFDLGHHHALIDYAHN-----PAGYEAVGGFVGNWSGEKVGVVGGP---GDR 777

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR---SIHVHYSETMD 431
                I L + LS      + +           G     +   + +   S+         
Sbjct: 778 RDDDLILLGK-LSALMFDRIIVKEDNDTRGRRRGEVADLILRGISQENASLRPEVILDET 836

Query: 432 GLFLFIQSSLVDGDVVVV 449
                  S++ +G +VV+
Sbjct: 837 EALEKALSTVSEGGLVVI 854


>gi|229495248|ref|ZP_04388983.1| folylpolyglutamate synthase [Porphyromonas endodontalis ATCC 35406]
 gi|229317691|gb|EEN83589.1| folylpolyglutamate synthase [Porphyromonas endodontalis ATCC 35406]
          Length = 441

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 4/58 (6%)

Query: 412 LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
              ++A    +      +++   L  Q   +  D++ +  SN      +   L + +P
Sbjct: 377 ELAQEARSIGLEGSVFPSIEEGCLAAQKEALPQDLIYIGGSNYV----VAEALKKCYP 430


>gi|92111280|gb|ABE73464.1| putative UDP-N-acetylmuramoylalanyl-D glutamate ligase [Bacillus
           fastidiosus]
          Length = 236

 Score = 37.9 bits (86), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 50/179 (27%), Gaps = 19/179 (10%)

Query: 273 EVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRC 332
            +  +           G H  +N+L  +  V I   +       L+ F   + R    + 
Sbjct: 47  FMDEEKIINIDEIVLPGKHNLENILAAIAAVKIYGVNNTAIRHVLTTFSGVKHRL---QF 103

Query: 333 ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDL 392
                     ++S   N  +   A+   ++           +L    + G         L
Sbjct: 104 VGEVEGRKFYNDSKATNILATTKALQAFTK--------PTILLAGGLDRGNEFDELKPSL 155

Query: 393 AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVVVV 449
                  N+  +   G     L+     S    +   + ++        +  + DV+++
Sbjct: 156 ------KNVKTLITFGETAPKLERIAKESGIEVIKRVDNVEQAVYAAFDASNEEDVILL 208


>gi|187932179|ref|YP_001892164.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. mediasiatica FSC147]
 gi|187713088|gb|ACD31385.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella tularensis subsp. mediasiatica FSC147]
          Length = 347

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  + G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIITGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKATAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|253580842|ref|ZP_04858105.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847912|gb|EES75879.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 427

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 8/153 (5%)

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
           A              R  +       + +  +   A+   A S+            + V 
Sbjct: 279 AEQKKEGLRTVNWNGRFTVICKKPLFVVDGAHNPAAADMMAASIEHYFKGKRIIYIMGVF 338

Query: 376 GDMCEMGELSQSFH--IDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
            D      + ++ H    +  + +  NI  +  +G     + +    + +V   +T+   
Sbjct: 339 ADKDYRSVIQKTAHFADRILTIQTPDNIRAL-PAGELAKTVSEY---NPNVQAMDTIKDA 394

Query: 434 FLFIQSSLVDGDVVVVKSSNSC--GFYRLINLL 464
                S   + DV++   S S       ++  L
Sbjct: 395 VEEAFSLAGEQDVIIAFGSLSFIGEMTDIVENL 427


>gi|134302620|ref|YP_001122591.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134050397|gb|ABO47468.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
          [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 347

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 30/113 (26%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  + G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIITGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKATAAIVSKKISKELAQVNDKPLIVVNNADLAMAKI 91


>gi|146312506|ref|YP_001177580.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Enterobacter sp. 638]
 gi|145319382|gb|ABP61529.1| FolC bifunctional protein [Enterobacter sp. 638]
          Length = 422

 Score = 37.9 bits (86), Expect = 4.1,   Method: Composition-based stats.
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+   L+     +   + +   G      +  +         E++   +    +     
Sbjct: 336 KDIGGTLACMESVVDCWYCAPLEGPRGATAEQLMEHISAGTAYESVAQAWHAAMADAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|52141049|ref|YP_085780.1| folylpolyglutamate synthase [Bacillus cereus E33L]
 gi|51974518|gb|AAU16068.1| folylpolyglutamate synthase [Bacillus cereus E33L]
          Length = 433

 Score = 37.5 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 82/285 (28%), Gaps = 16/285 (5%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLNYDD 229
            LG     T+++ P + +IT I   H+      +EEIA  KA I +      T   + + 
Sbjct: 147 GLGGRFDSTNVIHPVLTIITNIGHDHMHILGNTLEEIAYEKAGIIKSGVPVITGVQDEEA 206

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                  AK +   +       +  N    L K      + +          +V     G
Sbjct: 207 LQVIQKIAKENQANLY------EMGNHFTSLHKQSSEDGEQFDFTCPFASFEDVRITMKG 260

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   N  + L  V  +   +   I+   +    +      R    Q    +I +  +  
Sbjct: 261 SHQVGNAALALMAVMYVKTYLSFLIEEEEIRTGLQEAYWVGRFEKLQSNPDIIIDGAHNP 320

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL--SLYNISHVWLS 407
                   +V S             LGD  ++  +       +A+ +  + +       +
Sbjct: 321 EGIESLVKTVESHYKDKNVIVLFTALGD-KQLHNMVDQL-ETIADEIIFTTFAFDRAISA 378

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G      K            E            + + DV ++  S
Sbjct: 379 GELASYAKKESK-----LVFENWKEAIDTKVEMIGENDVFIITGS 418


>gi|300871198|ref|YP_003786071.1| myristoyl-acyl carrier protein (ACP)-dependent acyltransferase
          [Brachyspira pilosicoli 95/1000]
 gi|300688899|gb|ADK31570.1| myristoyl-acyl carrier protein (ACP)-dependent acyltransferase
          [Brachyspira pilosicoli 95/1000]
          Length = 346

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 5  WTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
              D+ + +    I       +  +S I+   I+             D + +I  A+  
Sbjct: 1  MNIKDISKFLNAIKILGDDNINITTLSPIN--DISECSI-VC-----VDNNKYIETALNS 52

Query: 64 GAGLVVVNTDMVASIGS-LSIPVFGVDDVLGALNKL 98
           A  +++  D+  +I            +   A  KL
Sbjct: 53 KASAIILREDLANTIEDFKKKTAIIHANPKEAFIKL 88


>gi|300741266|ref|ZP_07071287.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
 gi|300380451|gb|EFJ77013.1| UDP-N-acetylmuramate--alanine ligase [Rothia dentocariosa M567]
          Length = 486

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 148/444 (33%), Gaps = 50/444 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVF---GVDDVLGALNKLAVAARLRS------- 106
           I    + GA   V      A+I  +   V      +D    +   A   R+         
Sbjct: 58  IQALREAGAR--VYTPQDAANIHDIDTVVISTAIHEDNPELIAARAQNLRVLHRSEALAA 115

Query: 107 ---KATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
               + ++A+ G+ GK+TT  M+ + L  +    +                    +  + 
Sbjct: 116 AMGSSQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGEGSWF 175

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    +R+     +P IAV+T + P HL  +   E +  A       +   G +
Sbjct: 176 VAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFNRFVASMAPGGVL 230

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
              +DD     L  ++   GI+ + ++G+S  AD ++ +      +S   ++   +    
Sbjct: 231 VTCWDDEGARALAERARDAGIEVV-TYGQSTEADLRVSRITSHGSESSATLRWSFECASK 289

Query: 284 V--------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N         +  A  + A  AL  F   + R         
Sbjct: 290 HYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRGDVAG 349

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + + Y  +P  +  A+     ++   +G  + V+     +   +Q F  D A+ 
Sbjct: 350 IK----VFDDYAHHPTEVFRALETGRTVA---DGHNLYVVFQPH-LFSRTQEFAADFAQA 401

Query: 396 LSLYNISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           LS  + S+V            G     +  A      VHY+         I    V GD+
Sbjct: 402 LSKADRSYVLDIYPARELPIEGVTSELITGA--GFSEVHYASDAAAAIEDIAMCAVPGDI 459

Query: 447 VV-VKSSNSCGF-YRLINLLLEEF 468
           ++ + + +      R+++ L   +
Sbjct: 460 IMTIGAGDVTALGERILHELHARY 483


>gi|55977152|gb|AAV68370.1| unknown [Herminiimonas arsenicoxydans]
          Length = 414

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 120/378 (31%), Gaps = 46/378 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTIALSSIKK----------TYACIGSYNNHIGVPLTLAR-- 155
             ++A+ G+ GKTTT  ++   L + K                         P +     
Sbjct: 30  IPVVAVAGTNGKTTTVRLIAHILQANKHRVGMTTTDGVYIENQRIDTGDCSGPRSARNVL 89

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL---SNFSGIEEIASAKAE 212
           M  DVD  +FE      G +R      R ++AV+T I        +  S +E++A  K  
Sbjct: 90  MHPDVDAAVFETA--RGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRV 147

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   GT  LN  D     + A               +  A  + +  +        
Sbjct: 148 IVQNVAPNGTAVLNAADPMVANMAASCPGSVTFFAKDGNHAVLATHRAKGHRVVFLDGTS 207

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +   E ++    + + H+G+     +N +  +G    L    D  +  L  F    
Sbjct: 208 IVASEGAFEHRIALADIAITHNGLIGFQIENAMAAIGAAWSLNLSWDIVLNGLRTFENSA 267

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                          T+I + Y  NP +++A    +  +       R+ V+    +  + 
Sbjct: 268 ATTPGRFNLFTHHGATVIAD-YGHNPDAIEALTHAVEAMPAKR---RMVVISGAGDRRDD 323

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
                 ++           V L           G  +  L+  L ++      + + G  
Sbjct: 324 DLRRQTEILGDA----FDDVILYEDQCQRGRADGEVLALLRQGLTKAKRAKSIKEIHGEF 379

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  +SL  GD+ ++
Sbjct: 380 LAIDTALASLQAGDLCLI 397


>gi|45659130|ref|YP_003216.1| UDP-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
           diaminopimelate ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45602376|gb|AAS71853.1| UDP-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
           diaminopimelate ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 465

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 41/347 (11%), Positives = 87/347 (25%), Gaps = 24/347 (6%)

Query: 96  NKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLAR 155
             +           +I + G+ GKTTT  ++   L                 G+P     
Sbjct: 92  AAIGKFFLK--GKKVIVVAGTHGKTTTTFLIHHILKENGVEPGLFVGGIRKDGLPGFELG 149

Query: 156 MPVDVDFGIFELGMSHLGEIRF--LTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEI 213
              +    + E                  +P   V+  +   H   F  I  I +    +
Sbjct: 150 ---NGSIFVIEGDEYDTAFFDKSSKFLHYKPTYTVLNALDFDHADIFPDITAIETMFKRL 206

Query: 214 FEGLEKTGTIFLNYDDSFFELLKA-----KSHALGIKTIYSFGKSKNADFQLRKWKQCSE 268
              +   G IF        + L       K          S    K  +      K    
Sbjct: 207 INLVPGNGKIFYWNGSGSLKKLVQHVSFTKVEGFEWNRKDSCLTWKKHELFWADQKLNPS 266

Query: 269 QSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGK 328
                     +    V   I      +        +I +       + +    P     +
Sbjct: 267 LFGDHNYRNIEVAIRVCSEILKIQNPSGYKEGIAKAIDSFPGVKRRQDILFQSPNAIVME 326

Query: 329 RYRCALNQGFFTLI---DESYNANPASMKAAISVLSQISPHGE-------GRRIAVLGDM 378
            +         T+       +     S+    S  S  +   +       G  + +L ++
Sbjct: 327 DFAHHPVAVHETIHAVKKRFHGYKIISLFEPRSATSHRNVFQKEYSYSFIGSDLTILTEI 386

Query: 379 CEMGELSQSFHIDLAEVLSL--YNISHVWLSGFHVLALKDALPRSIH 423
             + ++S+   +D+ +++     N   + +       L   L + I 
Sbjct: 387 HNLKKVSKDIRLDVKKLVQKLLKNSKTIPVYAKDPKELLVKLEKMIP 433


>gi|331269099|ref|YP_004395591.1| folylpolyglutamate synthase [Clostridium botulinum BKT015925]
 gi|329125649|gb|AEB75594.1| folylpolyglutamate synthase [Clostridium botulinum BKT015925]
          Length = 439

 Score = 37.5 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 97/313 (30%), Gaps = 24/313 (7%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS-GIEEIASAKAEIFEGL 217
           +VD+ + E+    LG     T++++P ++VI++I+  H+      +E+IA  KA I +  
Sbjct: 138 NVDYAVMEV---GLGGRLDSTNVIKPILSVISSISYDHMKILGSTLEKIAYEKAGIIKDE 194

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                     +         K     +  + S              K       + +  +
Sbjct: 195 VPVVLYPQQENVENVIKDVCKDKRSELIKVPSDCAEFLICTDKILNKGERRVQNIIINTK 254

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
            +   +    +G H   N    +  +  L                 + +       L + 
Sbjct: 255 NQRYNINLSLLGKHQLLNCATVIYAIEKLRNLGVLISDTSITQGLLKVKWMGRFEILKKN 314

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
              +ID ++N +          L     +           +  +G L+     ++ EV++
Sbjct: 315 PLVVIDGAHNIDGIKKLKESINLYLEYKNV----------ILILGILTDKQVENMVEVIT 364

Query: 398 LYNISHVWLSGFHV--LALKDALPR-----SIHVHYSETMDGLFLFIQSSLVDGDVVVVK 450
                 V     H     +   L +     +      E+ +  ++       + D+++V 
Sbjct: 365 PMA-DKVICVTPHSDRAEIATELMKIVKKYNEDCEAVESYEDAYMNALKYCEEDDLLLVS 423

Query: 451 SSNSC--GFYRLI 461
            S        ++I
Sbjct: 424 GSLYMIGDMRKII 436


>gi|332307080|ref|YP_004434931.1| FolC bifunctional protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174409|gb|AEE23663.1| FolC bifunctional protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 426

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 26/283 (9%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG      ++V P IAVIT+I   H       +E+ +A+                    
Sbjct: 152 GLGGRLDAVNVVSPDIAVITSIDLDHQDWLGDTKELVAAEKA-------------GIMRP 198

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              ++  +S             + +A +Q + ++   E   M       S   +      
Sbjct: 199 NIPVVIGESVKYHALIDAVASNNASAWWQRQDFEYQVENDVMTWTNHDVSYLHLPLPHIP 258

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               +  + +  +  L    +     +                L+Q    ++D ++N + 
Sbjct: 259 MQNVSTGLQVLQILELGLTEEQIAHVIKGTRVPGR-----CQILSQSPKVMVDVAHNPHA 313

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMG-ELSQSFHIDLAEVLSLYNISHVWLSGF 409
                   +LSQI+         V+G + +   + S +    L     L  +      G 
Sbjct: 314 TG-----YLLSQIAKCDYNNLFLVVGMLKDKDIKASLADFSQLGAQWMLGGLD--VPRGA 366

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               +K  L     V    T+   F    +   + D++VV  S
Sbjct: 367 TAGEIKSVLDEQQKVLEFSTVAQAFEKANALAHEQDLIVVFGS 409


>gi|255326230|ref|ZP_05367316.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
 gi|255296684|gb|EET76015.1| UDP-N-acetylmuramate--alanine ligase [Rothia mucilaginosa ATCC
           25296]
          Length = 495

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 63/357 (17%), Positives = 128/357 (35%), Gaps = 36/357 (10%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPLTLARMPVDVDFGIFELG 168
           ++A+ G+ GK+TT  M+++    +    +  +G+     G    L     +    + E  
Sbjct: 126 VVAVAGTHGKSTTSSMISVMFDQLGAQPSFAVGTVIAGRGTNAHLGAQGPET-IFVAEAD 184

Query: 169 MSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYD 228
            S    +R+      P IAV+T + P HL  +   E +  A       L   G +    D
Sbjct: 185 ESDGSFVRYC-----PAIAVVTNVEPDHLDFYETDERVFEAFNRFVGSLAPNGVVVTCAD 239

Query: 229 DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS-------- 280
           D+    L A+S A G+  + ++G++ +AD ++ +       S   +    +         
Sbjct: 240 DAGAADLAARSRAAGVPVV-TYGEAADADLRISEITSAGSSSSSHLSWSFECRGVRYEGE 298

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFT 340
            ++     G H   N         I   +     +AL+ F   + R              
Sbjct: 299 QDLALKVPGIHNQLNASAAFASALISGYEAADIARALADFVGADRRFTLRGEVAG----V 354

Query: 341 LIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN 400
            + + Y  +P  +  A+     ++   +G  + V+     +   ++ F  + A+ LS+ +
Sbjct: 355 KVFDDYAHHPTEVFRALQTGRTVA---DGHNLYVIFQPH-LFSRTREFAKEFAQALSMSD 410

Query: 401 ISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            +HV            G     +  A    +      T +     I +   DGD+V+
Sbjct: 411 RAHVLDIYPARELPIEGVTSELITGAGFSEVR---YATAESAIEDIVACAQDGDIVM 464


>gi|328542967|ref|YP_004303076.1| UDP-N-acetylmuramate-L-alanine ligase [polymorphum gilvum
           SL003B-26A1]
 gi|326412713|gb|ADZ69776.1| UDP-N-acetylmuramate-L-alanine ligase [Polymorphum gilvum
           SL003B-26A1]
          Length = 468

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 130/414 (31%), Gaps = 49/414 (11%)

Query: 57  ILHAVQK--GAGLVVVNTDMVASIGSLSI---PVFGVDDVLGALNKLAVAARLRSKATII 111
           I HA +   GA ++VV++ +      L      +  V  V  A   LA   R +     I
Sbjct: 55  IGHAAENLGGAEVLVVSSAIRRDNPELVAAREKLIPV--VRRA-EMLAELMRFKQA---I 108

Query: 112 AITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSH 171
           AI G+ GKTTT  ++   L +       I     +              D+ + E   S 
Sbjct: 109 AIGGTHGKTTTTSLIAALLDAGGLDPTVINGGIIN---AYGTNARMGAGDWMVVEADES- 164

Query: 172 LGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF 231
                     +   +AV+T I P HL ++     + +A     E +   G   +  D   
Sbjct: 165 ----DGTFVKLPADVAVVTNIDPEHLDHYGDFAGVRAAFRHFVENVPFYGFAVMCLDHPE 220

Query: 232 FELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSM-------EVV 284
            + L  +        I ++G +  AD +         +S   V+ Q +          +V
Sbjct: 221 VQSLVGQIEDK---RIVTYGANPQADVRFTDVAMVGGRSTFSVRFQDRRTGETGTLSNLV 277

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
               G H   N    + +   L  D +   K L+ F   + R               I +
Sbjct: 278 LPMPGLHNVANAAAAIAVAHELGVDSEAIRKGLAGFGGVKRRFTYTGSWNG----VEIFD 333

Query: 345 SYNANPASMKAAISV---------LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
            Y  +P  ++A +           ++ + PH   R  ++  D       + +  +     
Sbjct: 334 DYGHHPVEIRAVLHAARETAKGRVIAVVQPHRYSRLASLFDDFSTCFNDADTVIVAPVYA 393

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQSSLVDGDVV 447
                I      G     L   L    H  V   E  + L   +      GD V
Sbjct: 394 AGEQPIE-----GAGRDDLVTGLKTRGHRSVFALEGPEALAALVAEHARPGDYV 442


>gi|254373659|ref|ZP_04989143.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella novicida GA99-3548]
 gi|151571381|gb|EDN37035.1| UDP-3-[O-3-hydroxymyristoyl] glucosamine N-acyltransferase
          [Francisella novicida GA99-3548]
          Length = 347

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/113 (8%), Positives = 31/113 (27%), Gaps = 43/113 (38%)

Query: 5  WTFHDLLQAIQGHSIGIVP-QGFVNGISIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQK 63
          +T   + + +    I     +  ++G+                        ++   A + 
Sbjct: 3  YTLKQISEHLNAKVINEPSGEVIISGL------------------------NYAEQAKEN 38

Query: 64 -----------------GAGLVVVNTDMVASIGSL-SIPVFGVDDVLGALNKL 98
                            A   +V+  +   +  +   P+  V++   A+ K+
Sbjct: 39 DLTLIDKQEHIKLWQNSKAAAAIVSKKISNELAQVNDKPLIVVNNADLAMAKI 91


>gi|315634200|ref|ZP_07889489.1| dihydrofolate:folylpolyglutamate synthetase [Aggregatibacter segnis
           ATCC 33393]
 gi|315477450|gb|EFU68193.1| dihydrofolate:folylpolyglutamate synthetase [Aggregatibacter segnis
           ATCC 33393]
          Length = 448

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 74/293 (25%), Gaps = 13/293 (4%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +AVIT+I   H        E    +        K   I       
Sbjct: 145 GLGGRLDATNIVDNDMAVITSIDIDHTDFLGSTREEIGFEKAGIFRANKPAIIGEPNIPQ 204

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
              +      +        +   +       +  +  E+    +        +       
Sbjct: 205 TMLMHAEILGSQLFCRHLDWNFCQQEQSWTWQTTREDEKVRWNLLADLPLCHIPLANAAT 264

Query: 291 HMAQNMLMTLGIVSILTAD---VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYN 347
            +A    +   I                      P+                  +     
Sbjct: 265 ALAAVQKLPFEISLETVKKSLLEVELTGRFQTMKPESLTHLAKMVEREVEALPRMIVDVG 324

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS 407
            NP + +     L+ +    +G+ IAV G + +  + +      L  ++  +    +   
Sbjct: 325 HNPHAARYLAEKLTALKAQSQGKLIAVCGILKD--KDAAGVLTPLLPLVDEWRCVTLGGY 382

Query: 408 -GFHVLALKDALPR-------SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            G     L   L +       +    Y++++            + D V+V  S
Sbjct: 383 RGQQGKDLFVTLQQIATQQHLNAQGSYADSVAEGVKSAVEMANENDTVLVFGS 435


>gi|121601920|ref|YP_989230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bartonella
           bacilliformis KC583]
 gi|120614097|gb|ABM44698.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Bartonella
           bacilliformis KC583]
          Length = 468

 Score = 37.5 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 50/371 (13%), Positives = 103/371 (27%), Gaps = 35/371 (9%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           VV+     ++  +      V      L +             IAITG+ GK+TT  +L  
Sbjct: 85  VVDKARQENVEVIGDIELFVRARNHFLQQYDFC---DWDVPFIAITGTNGKSTTTTLLVH 141

Query: 129 ALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAV 188
            L  +            ++G  +   +  V     + E     +     L   ++P I +
Sbjct: 142 LLEQMGYDVQMG----GNVGTAILTLKPFVKKRIYVIECSSFQID----LAPSLQPTIGI 193

Query: 189 ITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSF-FELLKAKSHALGIKTI 247
           +  + P H+         A  K  +            +      ++ L  + H +   + 
Sbjct: 194 LLNLTPDHIDRHGTFAHYAQVKGLLVSRASHALISVDDAACKTLYQQLVDEKHQVEAISK 253

Query: 248 YSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILT 307
             F ++       + +             Q   +  +        + N    L +++ L 
Sbjct: 254 KHFVENGFYVEGTQLFSVRHG--------QRHMLVDLAAVTSLRGSHNAQNALMVLATLQ 305

Query: 308 ADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHG 367
           A   T            G   R +     G    I++S   N  +   A++    I    
Sbjct: 306 ALKITDPHLEKHLVSYAGLAHRMQQVRKIGSVLFINDSKATNADASAVALATFDDIFWIL 365

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
            G+     G +  + +                 I   +L G         +  S  +  S
Sbjct: 366 GGKAKE--GGIGALRKFFP-------------KIRKAYLIGEAAEDFVRVIGSSFPISMS 410

Query: 428 ETMDGLFLFIQ 438
            T++       
Sbjct: 411 LTLENAVREAA 421


>gi|227502956|ref|ZP_03933005.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
 gi|227076307|gb|EEI14270.1| conserved hypothetical protein [Corynebacterium accolens ATCC
           49725]
          Length = 80

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 39/65 (60%)

Query: 144 NNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI 203
           NN IGVP+TL R+  + D+ + ELG +H GEI +   L RP  A++  +A AHL  F  +
Sbjct: 13  NNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSL 72

Query: 204 EEIAS 208
             +A 
Sbjct: 73  AGVAK 77


>gi|293415608|ref|ZP_06658251.1| folC bifunctional folylpolyglutamate synthase/dihydrofolate
           synthase [Escherichia coli B185]
 gi|291433256|gb|EFF06235.1| folC bifunctional folylpolyglutamate synthase/dihydrofolate
           synthase [Escherichia coli B185]
          Length = 422

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+A  L+     +   + +   G      +  L    +    + +   +    +     
Sbjct: 336 KDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDIVAQAWDAAMADAKAE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|116749106|ref|YP_845793.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698170|gb|ABK17358.1| FolC bifunctional protein [Syntrophobacter fumaroxidans MPOB]
          Length = 431

 Score = 37.5 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 90/300 (30%), Gaps = 27/300 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           +V++ + E GM   G     T+++ P ++VIT +   H         ++S   E    ++
Sbjct: 136 NVEWAVIETGM---GGRLDATNVIHPRVSVITNVTFDHQEYLGST--LSSIAREKAGIIK 190

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +   +           +   +       +Y  GK         K ++    +     L+ 
Sbjct: 191 EEVPVVTGVTQPLVHGVLTATCQRKRAVLYRLGKEF-------KARRRPGGAARYQGLKW 243

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +     G H  +N  + + ++ +L    D  I + +V           R  +    
Sbjct: 244 DWPSLEISLPGVHQVRNAALAIAVLEVLEEKGDFYIDSGAVELGLSAVRWPARLEVLGRR 303

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
             ++ +  +    +     ++ +  +         V+G M             +   L  
Sbjct: 304 PLIVLDGAHNPQGAESLRDALRNCFTYQK---LHLVMGIM------EDKDIAGIFRRLLP 354

Query: 399 YNISHVWLSGFHVLALKD------ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
              + ++    +  A K       A P + +      +              D++ +  S
Sbjct: 355 LAETAIFTQPRYSRAAKADRLRQLARPYAGNHCVIPDVAEAIQQAGRFAGPDDLICITGS 414


>gi|261340708|ref|ZP_05968566.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
 gi|288317124|gb|EFC56062.1| FolC protein [Enterobacter cancerogenus ATCC 35316]
          Length = 422

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 5/68 (7%)

Query: 390 IDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDG 444
            D+   L+     +   + +   G      +  +          ++   +    +     
Sbjct: 336 KDIGGTLACMESVVDSWYCAPLEGPRGATAEQLMAHLGEGKAYASVVEAWHAAMADAKPE 395

Query: 445 DVVVVKSS 452
           D V+V  S
Sbjct: 396 DTVLVCGS 403


>gi|124266216|ref|YP_001020220.1| cyanophycin synthetase [Methylibium petroleiphilum PM1]
 gi|124258991|gb|ABM93985.1| cyanphycin synthetase [Methylibium petroleiphilum PM1]
          Length = 855

 Score = 37.5 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 64/396 (16%), Positives = 124/396 (31%), Gaps = 46/396 (11%)

Query: 90  DVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI----------ALSSIKKTYAC 139
           +V  A+ +         +  ++A+TG+ GKTTT  ++              ++       
Sbjct: 451 NVGEAMIQHLFGHGDDGRIPVVAVTGTNGKTTTARLIAHLFATSGLRVGMTNTDGVYVEG 510

Query: 140 IGSYNNHIGVPLTLAR--MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
               +     P +     M  DVD  +FE      G +R      R  +AV+T I     
Sbjct: 511 RQIDSGDCSGPKSARNVLMHPDVDAAVFETA--RGGVLREGLGFDRCQVAVVTNIGSGDH 568

Query: 198 SNFSGI---EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSK 254
              + I   E++A  K  I + + ++G   LN  D     +        I          
Sbjct: 569 LGLNYITTVEDLAVLKRVIVQNVAQSGYAVLNATDVNVAAMAGTCPGDVIFFAADRHHPV 628

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY--------HMAQNMLMTLGIVSIL 306
            A  + +  +    +    V  QG   E +                 +N +  +     +
Sbjct: 629 MATHRAQGKRTVYVEGDALVAAQGAWREKLLLRDIPLTRGGTIGFQVENAMAAVAAAWGV 688

Query: 307 TADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPH 366
             D DT  + L+ F             ++    T+I + Y  NP +M+A ++ +  +   
Sbjct: 689 GLDWDTVRRGLASFVNDADNAPGRFNVMDFKGATVIAD-YGHNPDAMRALVAAVDAMPAT 747

Query: 367 GEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKD 416
               R  V+    +  +        +           V L           G  +  L++
Sbjct: 748 R---RAVVISGAGDRRDDDIREQTQILGAA----FDDVLLYQDAAQRGRADGEVIALLRE 800

Query: 417 ALPRSIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
            L  +    + E + G           L  G++ +V
Sbjct: 801 GLRGATRTRHVEEIHGEFIAIDTALDRLKPGELCLV 836


>gi|257457291|ref|ZP_05622462.1| UDP-N-acetylmuramate--alanine ligase [Treponema vincentii ATCC
           35580]
 gi|257445213|gb|EEV20285.1| UDP-N-acetylmuramate--alanine ligase [Treponema vincentii ATCC
           35580]
          Length = 483

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 116/370 (31%), Gaps = 34/370 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYAC-IGSYNNHIGVPL 151
            AL   +  +          I G  GKTTT  +    L  +  + +   GS  ++ G   
Sbjct: 106 EALGAFSAHSYS------AGIAGVHGKTTTTGIAGTLLKDLNLSVSVLAGSAVSNFGGGC 159

Query: 152 TLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
           T+        + + E       E +       P   V+T++   H   +   E+I +A  
Sbjct: 160 TVIN---GSKYFVAETC-----EYKRNFLFFHPQKIVLTSVESDHQDYYPQYEDILTAFL 211

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYS-FGKSKNADFQLRKWKQCSEQS 270
           +  + L +   +    DD+        + +     + + +GK+   D+ ++       QS
Sbjct: 212 QYIDRLPQFNELIYCSDDAGAREAAKLTFSSRPDLVLTPYGKTAYGDYGIKTLGIKDGQS 271

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
              +        +   G    +     + L I  I     +     L+         K  
Sbjct: 272 VFSLHGFDGEFRIGIPGEHSVLNAAAAVALVIGLIKQERKEVTAADLASIRNSLASFKGA 331

Query: 331 RC---ALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
           +     L +    L  + Y  +P ++   +  + +  P+       +   M      + +
Sbjct: 332 KRRSEILGEVNGILFMDDYGHHPTAIYKTLKGIHEFYPNR----RIIADFMSHTYSRTAA 387

Query: 388 FHIDLAE---VLSLYNISHVWLSGFH-------VLALKDALPR-SIHVHYSETMDGLFLF 436
              + A+         +  ++ S             L + + +    VHY E +     F
Sbjct: 388 LLPEFADAFSYADTVILHKIYASAREKYNGSINGKTLYEQMKKRHKKVHYFEEIMDAKDF 447

Query: 437 IQSSLVDGDV 446
           ++  L   D+
Sbjct: 448 VEKELRPNDL 457


>gi|119591037|gb|EAW70631.1| zinc finger protein 142 (clone pHZ-49), isoform CRA_b [Homo
           sapiens]
 gi|119591039|gb|EAW70633.1| zinc finger protein 142 (clone pHZ-49), isoform CRA_b [Homo
           sapiens]
          Length = 1524

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/305 (9%), Positives = 51/305 (16%), Gaps = 9/305 (2%)

Query: 91  VLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVP 150
            L    +    A    KA I  +  + G    +              A    + +H    
Sbjct: 122 PLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFH 181

Query: 151 LTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAK 210
                          +           L     P          A+  +   +       
Sbjct: 182 CPHCDFACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNP---VAYQDHVGKMHAHEKIH 238

Query: 211 AEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQS 270
                         L          K     L   T                 K      
Sbjct: 239 QCPECNFATAHKRVLIRHMLLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYM--- 295

Query: 271 WMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRY 330
                      +          A ++       S      D           K    +  
Sbjct: 296 -CTECGYVTKWKHYLRVHMRKHAGDLRYQCNQCSYRCHRADQLSSHKLRHQGKSLMCEVC 354

Query: 331 RCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHI 390
             A  + +      +   +P +             +    + AVL          + FH 
Sbjct: 355 AFACKRKYELQKHMASQHHPGTPAPLYP--CHYCSYQSRHKQAVLSHENCKHTRLREFHC 412

Query: 391 DLAEV 395
            L + 
Sbjct: 413 ALCDY 417


>gi|239814065|ref|YP_002942975.1| cyanophycin synthetase [Variovorax paradoxus S110]
 gi|239800642|gb|ACS17709.1| cyanophycin synthetase [Variovorax paradoxus S110]
          Length = 855

 Score = 37.5 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 121/380 (31%), Gaps = 48/380 (12%)

Query: 108 ATIIAITGSVGKTTTKEMLTI----------ALSSIKKTYACIGSYNNHIGVPLTLAR-- 155
             ++A+TG+ GKTTT  ++              ++         + +     P +     
Sbjct: 469 IPVVAVTGTNGKTTTARLINHLLASSGLRTGMTNTDGVYVDGRQTDSGDCSGPKSARNVL 528

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
           M  DVD  +FE+     G +R      R  +AV+T I        + I   E++A  K  
Sbjct: 529 MHPDVDAAVFEVA--RGGVLREGLGFDRCQVAVVTNIGSGDHLGLNYITTVEDLAVLKRV 586

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSFGKSKNADFQLRKWK 264
           I   +   G   LN  D     + A                 + +          + +  
Sbjct: 587 IVRNVAPDGYAVLNAADVNVAAMAAGCPGHVIFFTADRQHPVMATHRAQGKRTVYVDQDT 646

Query: 265 QCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
             + +     ++  + + +   G       N++  +     +  D DT    L+ F    
Sbjct: 647 LVAAEGSWRERIALRDVPITRGGTIGFQVDNVMAAVAAAWAVGLDWDTIRSGLASFLNDA 706

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    ++    T+I + Y  N  +M+A +S +  +  +     I+  GD  +    
Sbjct: 707 AGVPGRFNVMDYRGATVIAD-YGHNTDAMRALVSAVDTMPANKRSVVISGAGDRRDSDIR 765

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            Q+        +       V L           G  +  L+  L  +    Y + + G  
Sbjct: 766 DQT-------AILGQAFDDVILYQDAAQRGRADGEVMALLRQGLQGAARTRYIDEIRGEF 818

Query: 433 -LFLFIQSSLVDGD--VVVV 449
                  + L  GD  +++V
Sbjct: 819 VAIDTALARLQPGDLSLILV 838


>gi|71891930|ref|YP_277660.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|109892692|sp|Q493Q0|MURC_BLOPB RecName: Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase
 gi|71796036|gb|AAZ40787.1| UDP-N-acetyl-muramate:alanine ligase [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 480

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 69/390 (17%), Positives = 127/390 (32%), Gaps = 42/390 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATI 110
           GH +    +     +VV +     +   L+     +  +  A  L++L            
Sbjct: 70  GHKYSN--INNANVIVVSSAIHPNNPEILAAKQARIPVIKRAEMLSELMRFRHG------ 121

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           IAI+G+ GKTTT  M+    ++       I                     + I E   S
Sbjct: 122 IAISGTHGKTTTTTMIVNIYTAAGLDPTFINGGIVKSEGVHARLGY---SRYLIVEADES 178

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNF-SGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
                      + P + VIT I   H+  +    E +  A  +    L   G   +  DD
Sbjct: 179 -----DNSFLHLHPMVEVITNIDTDHIHEYQGNFEYLKKAFIDFLHNLPFYGYAIVCIDD 233

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEV-QLQGKSMEVVHHGI 288
                +  K      + I ++G +KNA+  +  ++Q  E+S   V +     ++V  +  
Sbjct: 234 PVICEILPKI----KRKIITYGFNKNANLHIFNYRQHIEKSSFTVSRFNQTKLQVTLNAP 289

Query: 289 GYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGR-----GKRYRCALNQGFFTLID 343
           G H A N    + + +         +K +  F     R             +Q    L+ 
Sbjct: 290 GCHNALNATAAIAVATEEGISDKIILKTMLDFQGTHRRFENLGYYSLNKINDQTGEILLI 349

Query: 344 ESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           + Y  +PA + A I  +    P        V+          +  + D  +VLS  +I  
Sbjct: 350 DDYGHHPAELHATIVAIRTGWPDR----RLVMVFQPHRYTRIKELYYDFIDVLSNVDILL 405

Query: 404 VW---------LSGFHVLALKDALPRSIHV 424
           +          + G    +L  A+     +
Sbjct: 406 ILHVYSAGEPPILGADSQSLCHAIREFGKI 435


>gi|189499399|ref|YP_001958869.1| FolC bifunctional protein [Chlorobium phaeobacteroides BS1]
 gi|189494840|gb|ACE03388.1| FolC bifunctional protein [Chlorobium phaeobacteroides BS1]
          Length = 436

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 419 PRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
               H   +ET       ++ +    D+V+V  S
Sbjct: 390 NEGFHAIVAETAAEALDIVKRTADKDDLVLVTGS 423


>gi|261337521|ref|ZP_05965405.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
 gi|270277921|gb|EFA23775.1| UDP-N-acetylmuramate--alanine ligase [Bifidobacterium gallicum DSM
           20093]
          Length = 521

 Score = 37.5 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 57/394 (14%), Positives = 108/394 (27%), Gaps = 47/394 (11%)

Query: 93  GALNKLAVAARL------RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNH 146
            A   LA+  R             + + G+ GK+TT  +L   L +  +      SY   
Sbjct: 111 AARQGLAIVHRSDILAWLMDGKRAVTVAGAHGKSTTSALLAHILVTAGQGDLADPSYAIG 170

Query: 147 IGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEI 206
             +             G  ++ ++   E         P IA+IT   P HL ++   +  
Sbjct: 171 ASIQGPDGTTRDGGHTGTGDVLVAEADESDGSFAKYHPTIAIITNAEPDHLDHYGTADRY 230

Query: 207 ASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQC 266
            +A            ++ L  DD     +     AL      ++G +   +         
Sbjct: 231 HAAFVNHASHAT--QSVILCVDDPGARSVLQGMDALTASRTITYGTTAREELGDLNGATF 288

Query: 267 SEQSWMEVQLQGKSMEVVHHGIGYHMA--------------QNMLMTLGIVSILTADVDT 312
              S  +      S   V                        N       +   T     
Sbjct: 289 VSISDEQETAGDGSERFVIDMPARVAHAATVVPVTLSIPGIHNARNATAAIIAATLLGMD 348

Query: 313 AIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRI 372
              A        G  +R+         T++D+  +          ++L+         R+
Sbjct: 349 PFVAAQAATSFHGAARRFDIKGTVNGVTVVDDYAHHPTE----IAALLTAARRRYPKARL 404

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS----- 427
            VL     +   +Q F  + A+ L+L     V ++G      +     ++  H       
Sbjct: 405 HVLFQPH-LFSRTQFFAQEFAQALALA--DDVIVTGIFPARERQEDFANVTAHTIVEQAE 461

Query: 428 -------------ETMDGLFLFIQSSLVDGDVVV 448
                        + M      +   +  GDVV+
Sbjct: 462 GITDHAQPWISDMDDMQEAAAAVVERVQPGDVVL 495


>gi|254520318|ref|ZP_05132374.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
 gi|226914067|gb|EEH99268.1| cyanophycin synthetase [Clostridium sp. 7_2_43FAA]
          Length = 874

 Score = 37.5 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 20/164 (12%)

Query: 299 TLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAIS 358
            +    +        IK     +         R          +   Y  N     + +S
Sbjct: 687 AICGALVGMGIDYCMIKNGITTYLLNSHKNSGRFNCYDINGINVILDYGHNIDGYNSVLS 746

Query: 359 VLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------G 408
            + +I     G    V+G     G+ +     ++ + +S   + ++ +           G
Sbjct: 747 AVKEI---NSGMLYGVIGIP---GDRTNGTAKEIGK-ISSKYLDYIIVKEDKDLRGRKQG 799

Query: 409 FHVLALKDAL---PRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
                + D +             + +  F    +    GD V+V
Sbjct: 800 EVAELIVDGITEDSDGKKYEVILSEEDAFEKALNMAKRGDTVIV 843


>gi|261337518|ref|ZP_05965402.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
 gi|270277918|gb|EFA23772.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Bifidobacterium
           gallicum DSM 20093]
          Length = 474

 Score = 37.5 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 64/384 (16%), Positives = 112/384 (29%), Gaps = 53/384 (13%)

Query: 85  VFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYN 144
              V +                 A  I ITG+ GKT+T EM++  L++   T   +    
Sbjct: 89  QLRVPNTRTG-----------KPAPWIGITGTNGKTSTTEMVSTMLTACGYTAPAV---- 133

Query: 145 NHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIE 204
            +IG  L+LA +  + D    EL    L     +        A IT I   HL    GIE
Sbjct: 134 GNIGNALSLAAVDPNNDVLCVELSSFQLHFTDSMAL----DCAAITNIGADHLDWHGGIE 189

Query: 205 EIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKT--------IYSFGKSKNA 256
             A+ K++++   ++                 A +    I          +         
Sbjct: 190 RYAADKSKVYAHAQQAIVYNAQDARVRDLAFAADASCARIGFTLDVPQDGMIGVADGWIV 249

Query: 257 DFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKA 316
           D         +    +        +      +  H+  + +  L  V    AD   A++A
Sbjct: 250 DRAGLMGSDPATPVMVAPVADFTHLREPDGTVYPHLLADAMTALAWVLSFGADAAPALEA 309

Query: 317 LSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLG 376
           L  F P   R +      +        +      +    A +  + +   G      + G
Sbjct: 310 LKTFKPGGHRIECVAQYTSDEGAIRFID-----DSKATNAGAAAASLGSFGAHTVSWIAG 364

Query: 377 DMCEMGELSQSFHIDLAEVLSLYNISHVW---LSGFHVLALKDALPRSIHVHYSETMDG- 432
            + + G           E L   N   +    + G     +  AL +S        +D  
Sbjct: 365 GLAKGGTF---------EQLVADNRDRLVGVTVIGVDQEPMLKALLQSAPDVPVSVIDAE 415

Query: 433 --------LFLFIQSSLVDGDVVV 448
                         +    GDVV+
Sbjct: 416 PNDTVMARAVDAAAAYAKPGDVVL 439


>gi|255349155|ref|ZP_05381162.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 70]
 gi|255503692|ref|ZP_05382082.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 70s]
 gi|255507372|ref|ZP_05383011.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis D(s)2923]
 gi|289525802|emb|CBJ15283.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis Sweden2]
 gi|296435380|gb|ADH17558.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis E/150]
 gi|296439097|gb|ADH21250.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis E/11023]
          Length = 416

 Score = 37.5 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 19/84 (22%)

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
                   V   G     +   L     V   + +    L  +   V GDV+V+    +S
Sbjct: 333 ALRKAAKSVVAMGECAQEIARDLEE-FPVTVVKNLSEALLCAEEQAVPGDVIVLSPACAS 391

Query: 453 ---------NSC------GFYRLI 461
                             G   ++
Sbjct: 392 FDQFRSYEERGAMFKHLVGMEEVL 415


>gi|255658885|ref|ZP_05404294.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Mitsuokella multacida DSM 20544]
 gi|260848834|gb|EEX68841.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Mitsuokella multacida DSM 20544]
          Length = 339

 Score = 37.5 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 19/107 (17%)

Query: 6   TFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIA---PQEAFFAIKGPHYDGHDFILHAVQ 62
           T  ++ + + G   G      ++G+  D  +I      +  FA      D H  I  A  
Sbjct: 4   TLQEIAEYVGGRVEG-DASIVISGL--D--NIEGAGEHDLTFA-----VDPH--IEEAKA 51

Query: 63  KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKAT 109
             A  V+    +   +         V++   A  +L      + +  
Sbjct: 52  CRAAAVM----LPEGVADFPKTALYVEEPRAAFARLLELFTPKLQFP 94


>gi|223038509|ref|ZP_03608803.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
 gi|222880366|gb|EEF15453.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase) [Campylobacter rectus
           RM3267]
          Length = 430

 Score = 37.5 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 44/385 (11%), Positives = 106/385 (27%), Gaps = 59/385 (15%)

Query: 98  LAVAARLR---SKATIIAITGSVGKT-----------------TTKEMLTIALSSIKKTY 137
           LA   RL        II ITG+ GKT                          +++ +   
Sbjct: 46  LAECKRLLDIDESIKIIGITGTNGKTTTAAAICATLLNLGYGCGLCGTRGAFVNNERIDD 105

Query: 138 ACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHL 197
             + +      +    A      ++ + E+  S     +     +   + + T +   HL
Sbjct: 106 KALTTSEILRTLSYLKAASERGCEYFVMEV--SSHAIAQKRIESLDFAMKIFTNLTQDHL 163

Query: 198 SNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNAD 257
                 EE A  K+E F           +                      ++    NAD
Sbjct: 164 DYHGTFEEYARVKSEFFADDAPKLINIDDRG----------GIKFNPANALTYALHANAD 213

Query: 258 FQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKAL 317
           F   ++             + +     +    +++   +     + ++    ++   +A 
Sbjct: 214 FAPGEYSLEGGIRATLKTPRRQMALSSNLHGEFNLYNLIAAASCVATLTDRPLEQIARAA 273

Query: 318 SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGD 377
           + F   EGR       +++    ++D ++  +             ++     + +AV G 
Sbjct: 274 AKFDGVEGRM----EVVSREPLVIVDFAHTPDGIE--------KVLNALRHRKIVAVFGA 321

Query: 378 MCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVL---------ALKDALPRSIHVHYSE 428
               G             ++      + ++  +            +   L  +  V    
Sbjct: 322 ----GGDRDRTKRPKMGAIAQKYAHRLVVTSDNPRSEEPESIIAEICGGLEMNECVKCIA 377

Query: 429 TMDGLFLFIQSSLVDGDVVVV--KS 451
                  +   SL   +++V+  K 
Sbjct: 378 NRKEAIKYALESLTQDEILVILGKG 402


>gi|166154100|ref|YP_001654218.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis 434/Bu]
 gi|301335338|ref|ZP_07223582.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis L2tet1]
 gi|226711895|sp|B0B8Y4|MURD_CHLT2 RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|165930088|emb|CAP03571.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis 434/Bu]
          Length = 416

 Score = 37.5 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 19/84 (22%)

Query: 396 LSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV---KSS 452
                   V   G     +   L     V   + +    L  +   V GDV+V+    +S
Sbjct: 333 ALRKAAKSVVAMGECAQEIARDLEE-FPVTVVKNLSEALLCAEEQAVPGDVIVLSPACAS 391

Query: 453 ---------NSC------GFYRLI 461
                             G   ++
Sbjct: 392 FDQFRSYEERGAMFKHLVGMEEVL 415


>gi|254426827|ref|ZP_05040534.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
 gi|196192996|gb|EDX87955.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Alcanivorax sp.
           DG881]
          Length = 441

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 134/393 (34%), Gaps = 44/393 (11%)

Query: 61  VQKG----AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGS 116
            +KG    A  ++V+  +  S  +++     V D    +  + + AR  S+  ++AITGS
Sbjct: 59  FKKGWMGKARRLIVSPGVAVSTPAIAE---QVVDGKEVIGDIELFARAASE-PLVAITGS 114

Query: 117 VGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIR 176
             K+T   +L     +             ++GV      +       + EL    L    
Sbjct: 115 NAKSTVTTLLGQVADACGMN----PGIGGNLGVAALEL-LDDQARLYVLELSSFQL---- 165

Query: 177 FLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLK 236
             T+ +   +A I  ++  HL  ++   +  +AK  +++G +              + L 
Sbjct: 166 ETTYSLSAEVATILNVSQDHLDRYASFADYLAAKQRVYDGCQVAVWNR--------DDLA 217

Query: 237 AKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNM 296
            +  A  +    SFG    AD++L         S     L      +    +      N 
Sbjct: 218 TRPPAT-VARQISFGAHPEADYRL--------DSENGQLLCRGEPLLSLSELALTGHHNA 268

Query: 297 LMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAA 356
           +  L +++I  A      KAL+      G   R +     G     ++S   N  +    
Sbjct: 269 MNILSVLAISDALSLNRDKALATVKAFTGLPHRCQLVAEAGGVRWFNDSKATNVGAT--- 325

Query: 357 ISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKD 416
           ++ L+ I    EG+ I V G   +  + S      LAE    Y +    L G     +  
Sbjct: 326 LAALTGIGESIEGKVILVAGGQGKGQDFSP-----LAEPARQY-LRAALLMGEDRNTVAQ 379

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVV 449
            +  +        M        +    GD V++
Sbjct: 380 GMSAA-PCELVADMAAAVARAHALAQPGDAVLL 411


>gi|145588353|ref|YP_001154950.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046759|gb|ABP33386.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 540

 Score = 37.5 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 48/382 (12%), Positives = 108/382 (28%), Gaps = 35/382 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKT-----YACIGSYNNHI 147
            AL+++A        A ++A+TG+ GKTTT  +         K           + +  +
Sbjct: 133 AALSRMAQTNESSYAAKVLAVTGTNGKTTTTALTGQLCERAGKRVAVAGNISPAALDKLM 192

Query: 148 GVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIA 207
                  ++    D  + EL    L      T  + P  A +  I   HL     +    
Sbjct: 193 SCLEAADQLEDMPDVWVLELSSFQL----VYTSSLNPTAAAVLNITQDHLDWHGEMSAYV 248

Query: 208 S-------AKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
                   +        + +  + L  ++   E       +       +FG   +     
Sbjct: 249 EAKSKIFGSDTICVLNRDDSLVMGLFSEEQKAEKFTVTFGSNRPDEQGAFGIEHDLRAGG 308

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALS-- 318
             W   +E          +  +         +    L+    + I          A    
Sbjct: 309 IDWLVWAEVDEDLEPKPKRRRKSAVIEEDEPLRLKRLIPADALRIRGRHNALNALAALAL 368

Query: 319 -------VFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISP----HG 367
                  +     G    +          ++++    + +      + ++ I+       
Sbjct: 369 ARAANLPMNVLLHGLRDYHGEPHRVQSIAIVNDVEYVDDSKGTNVGATVAAINGLGSNES 428

Query: 368 EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYS 427
             R   + G   +  + S           +L  +  V++ G     + +A+   I    S
Sbjct: 429 GKRIWLIAGGEGKGQDFSP------LREPALRFVKGVFVIGKDGDKIVEAMGSDIPCTNS 482

Query: 428 ETMDGLFLFIQSSLVDGDVVVV 449
           +T+        +  V GD+V++
Sbjct: 483 KTLQMAVQAAAAQAVSGDLVLL 504


>gi|194214447|ref|XP_001493517.2| PREDICTED: ankyrin repeat and LEM domain containing 2 [Equus
           caballus]
          Length = 879

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 15/63 (23%)

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGF------YRLINLLLE 466
           A +DA PR+  +H  E        ++         ++K S    F       +    + +
Sbjct: 148 AYEDAPPRNERIHVYEDKKEALQAVR---------MIKGSRFKAFSSREDAEKFARGICD 198

Query: 467 EFP 469
            FP
Sbjct: 199 YFP 201


>gi|295104114|emb|CBL01658.1| UDP-N-acetylmuramate--L-alanine ligase [Faecalibacterium
           prausnitzii SL3/3]
          Length = 461

 Score = 37.5 bits (85), Expect = 5.2,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 91/283 (32%), Gaps = 18/283 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P+++V+  I   HL  +  + E+  A        +       +  ++
Sbjct: 171 EACEFAETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRFALMTQFMIFANADDKNT 230

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                         + + +F    + D++     +     +     +  + +     +  
Sbjct: 231 M------DVMYTLDRRVRTFAIDNHGDYRAVNINEYKPGFFEFDLKEWNTTDTTRIRLSV 284

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+   L + ++      +A +        +G G+R+          +ID+ Y  +P
Sbjct: 285 PGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYGECNGALVIDD-YAHHP 343

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSG- 408
             ++A ++   ++     G +  +          ++    D  +VL + +I+ +  + G 
Sbjct: 344 TELRATLNTAKEM-----GYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDITVLTPIMGS 398

Query: 409 ---FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVV 447
                       L   I       ++     +++ +   GD+V
Sbjct: 399 REPNDPTITSAKLAAQIPGSVLVNSLQEAADWVKQNAQPGDLV 441


>gi|254513896|ref|ZP_05125957.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
 gi|219676139|gb|EED32504.1| cyanophycin synthetase [gamma proteobacterium NOR5-3]
          Length = 928

 Score = 37.5 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 108/383 (28%), Gaps = 46/383 (12%)

Query: 106 SKATIIAITGSVGKTTTKEMLTIALSSIK----------KTYACIGSYNNHIGVPLTLAR 155
           S   I AITG+ GKTTT  ML   L                     +    +  P     
Sbjct: 489 SSIPIAAITGTNGKTTTSRMLAHILKMSGLTVGQTSTDGVYIDGRLTVAGDMTGPTAAQI 548

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS--GIEEIASAKAEI 213
           +  D       +  +  G +R      R +++    IA  HL       +E++A  K  +
Sbjct: 549 VLRDPSVNAAVMETARGGILRSGLGYQRSNVSACLNIAADHLGLKGVNSLEDLAEVKRVV 608

Query: 214 FE-------------GLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQL 260
            E                +           +  + ++                       
Sbjct: 609 VEVARDAAVLNADDVHCLQMADHCTAEKLCYVTMNRSHPLVREHIKAGGTALVLEQGING 668

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
                  EQ      L    +     G   H  QN +    +   +  D++   + L  F
Sbjct: 669 GMITLYDEQGHNIPLLWTHLIPATLEGRAMHNVQNAMFAAALAYHMHIDLENIRQGLRTF 728

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                +        ++  F +I + Y  NPA++K    V+ +      GR+I VL     
Sbjct: 729 DSTFFQSPGRLNVYDKHPFKVILD-YAHNPAAVKMVCDVVDRY--EIGGRKIVVLTMP-- 783

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLSGFH----------VLALKDALPRSI----HVHY 426
            G+      +++A  ++  +  H                    LK  L         +  
Sbjct: 784 -GDRRDEDIVEVAG-IAAGHFDHYICRRDDNLRGREPSEVPALLKQGLLAGGVPEDRIQI 841

Query: 427 SETMDGLFLFIQSSLVDGDVVVV 449
            E  +            GD++++
Sbjct: 842 IEREEEANQAALDMARGGDLLLI 864


>gi|270012994|gb|EFA09442.1| hypothetical protein TcasGA2_TC010657 [Tribolium castaneum]
          Length = 1436

 Score = 37.1 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/193 (6%), Positives = 37/193 (19%), Gaps = 1/193 (0%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                ++A T  +      +   +  S +              G+P        +    +
Sbjct: 374 SLNYLLLAFTHGMDYCLKNKPTALFDSPVCGNGFVEPGEQCDCGLPEHCDNTCCNATTCM 433

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S            +P  A     +  +  +         ++    +  +    + 
Sbjct: 434 LHTNASCATGECCDLTTCKPKSAGTLCRSADYECDLPEYC-TGHSEYCPADIYKMDAEMC 492

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                  +                  GKS +        K     +    +      +  
Sbjct: 493 DGGKAFCYHGFCRTRTDQCKLLWGETGKSSDDQCYKMNIKGNRHGNCGYDKFNKSFFKCN 552

Query: 285 HHGIGYHMAQNML 297
              +   M     
Sbjct: 553 DENVLCGMLHCKH 565


>gi|91093697|ref|XP_966486.1| PREDICTED: similar to ADAM metalloprotease, partial [Tribolium
           castaneum]
          Length = 1457

 Score = 37.1 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/193 (6%), Positives = 37/193 (19%), Gaps = 1/193 (0%)

Query: 105 RSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGI 164
                ++A T  +      +   +  S +              G+P        +    +
Sbjct: 395 SLNYLLLAFTHGMDYCLKNKPTALFDSPVCGNGFVEPGEQCDCGLPEHCDNTCCNATTCM 454

Query: 165 FELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIF 224
                S            +P  A     +  +  +         ++    +  +    + 
Sbjct: 455 LHTNASCATGECCDLTTCKPKSAGTLCRSADYECDLPEYC-TGHSEYCPADIYKMDAEMC 513

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
                  +                  GKS +        K     +    +      +  
Sbjct: 514 DGGKAFCYHGFCRTRTDQCKLLWGETGKSSDDQCYKMNIKGNRHGNCGYDKFNKSFFKCN 573

Query: 285 HHGIGYHMAQNML 297
              +   M     
Sbjct: 574 DENVLCGMLHCKH 586


>gi|294012781|ref|YP_003546241.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
 gi|292676111|dbj|BAI97629.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Sphingobium
           japonicum UT26S]
          Length = 444

 Score = 37.1 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 64/422 (15%), Positives = 124/422 (29%), Gaps = 89/422 (21%)

Query: 46  IKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSL-------SIPVFGVDDVLGALNKL 98
           +KG  +DG              VVV+  +  +   +        +PV G  D+     +L
Sbjct: 66  LKG--FDG--------------VVVSPGVPLNKHPIAMHAKLAGVPVIG--DI-----EL 102

Query: 99  AVAARLR-SKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP 157
              AR    K  ++ ITG+ GK+TT  ++   + +             +IG+P+      
Sbjct: 103 FALARPSLPKHRVVGITGTNGKSTTTALVHHIIETAGI----PTRMGGNIGLPILGQTPL 158

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
            +    + EL    +     LT  +   +AV+  I P HL  ++G E   ++KA +F   
Sbjct: 159 PEGGVYVLELSSYQID----LTQSLDCDVAVLLNITPDHLDRYNGFEGYVASKARLFAMQ 214

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                  +  +D     +                      + +R  ++      +EVQ  
Sbjct: 215 SAGHVAVIATEDEPSRGI---------------------FYSVRHSREGGNDGVVEVQSS 253

Query: 278 GKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQG 337
                            N       +++  A                    R +      
Sbjct: 254 DIEPSAQAGWPALQGPHNAQNAAVAIAVARALGIDEATIEQGLQSYASLPHRMQRVRELN 313

Query: 338 FFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLS 397
               +++S   N AS   A++    +                   +  +  H  +  +  
Sbjct: 314 GVLYVNDSKATNAASTAPALAAYPPV-------------------DGRKRLHWIVGGLAK 354

Query: 398 LYNISHV----------WLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
             N+             +  G       + L   + V  SE +             GDVV
Sbjct: 355 TDNLDECAPWFGHVAQAYTIGEAGPMFAELLRPHMAVDDSEMLSAAVRRAARVAQPGDVV 414

Query: 448 VV 449
           ++
Sbjct: 415 LL 416


>gi|153814139|ref|ZP_01966807.1| hypothetical protein RUMTOR_00348 [Ruminococcus torques ATCC 27756]
 gi|145848535|gb|EDK25453.1| hypothetical protein RUMTOR_00348 [Ruminococcus torques ATCC 27756]
          Length = 445

 Score = 37.1 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 45/178 (25%), Gaps = 17/178 (9%)

Query: 300 LGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISV 359
           +  V+   A     +         E               +           +  AA  +
Sbjct: 268 INAVTAWEAVHVPGLLKKEEKRAVETGFFDTEWFGRFTCISEWPVFLVDGAHNEDAAKRL 327

Query: 360 LSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG----------F 409
              I  +  GR++  +     MG      +  +  +   Y    V+              
Sbjct: 328 RESIEAYFPGRKLIYI-----MGVFQDKEYEKIIRLTIPYA-KCVYTVDLPNKERTLSAQ 381

Query: 410 HVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
            +    +A    +  +    +         +  + DV++   S S    ++   + +E
Sbjct: 382 KLKEAVEAQSEYVPAYAVGEIKQAVKEALENADEDDVILAFGSLSY-LGKVKEAVEKE 438


>gi|183599659|ref|ZP_02961152.1| hypothetical protein PROSTU_03148 [Providencia stuartii ATCC 25827]
 gi|188021913|gb|EDU59953.1| hypothetical protein PROSTU_03148 [Providencia stuartii ATCC 25827]
          Length = 430

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 23/285 (8%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V   +A +T+IA  H        E    +        +   +       
Sbjct: 150 GLGGRLDATNIVDADVAAVTSIALDHTDWLGSDREHIGFEKAGIFRGGRYAVVGEPDMPQ 209

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                     AL  +    +   +  D             W     Q + + +    +  
Sbjct: 210 SIGQHAENIGALLFRRDKDWSFEQQQDC------------WAWQSRQCQWLNLPLPNVPL 257

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
             A   L  +  +  + + + T I   ++           R  +      +I +  +   
Sbjct: 258 ANAATALGVICCLKEIDSQLATKITDQAIHDGLRSAQLPGRFQIIGEKPLMILDVAHNPH 317

Query: 351 ASMKAAISVLSQISPHGEGRRIAV--LGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS- 407
           A+      +    +  G   R  V  LGD    G L+      L+E ++ + ++ +    
Sbjct: 318 AAGYLINRLAQLPAVEGRRVRAVVGMLGDKDIQGTLTC-----LSEQVTDWYVAPLTEFR 372

Query: 408 GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
           G     L   L         +++D  +        D D++VV  S
Sbjct: 373 GAPASQLSQYLDSP---QVFDSVDDAWQKACLDATDNDIIVVCGS 414


>gi|166154975|ref|YP_001653230.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|226711897|sp|B0BAL3|MURD_CHLTB RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|165930963|emb|CAP06525.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
          Length = 416

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 53/226 (23%), Gaps = 37/226 (16%)

Query: 254 KNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTA 313
              D +        E       L  +S     +    H      +   I   ++      
Sbjct: 209 WVGDERFYGHLYLEEVQKYMRLLDKESALKPLYLHDKHNYCCAYLLAKIEFPISETSFIE 268

Query: 314 IKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIA 373
             A     P      R      +     I++S     ++ + A+            + I 
Sbjct: 269 AVATFNKPP-----HRMEYLGQKQGIHYINDSKATTVSATETAL-------LGVGNQAIV 316

Query: 374 VLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGL 433
           +LG   +    S                  V   G     +   L     V   + +   
Sbjct: 317 ILGGRNKGCTFSSLL------PALRKAAKSVVAMGECAQEIARDLEE-FPVTVVKNLSEA 369

Query: 434 FLFIQSSLVDGDVVVV---KSS---------NSC------GFYRLI 461
            L  +   V GDV+V+    +S                  G   ++
Sbjct: 370 LLCAEEQAVPGDVIVLSPACASFDQFRSYEERGAMFKHLVGMEEVL 415


>gi|123965256|ref|YP_001010337.1| UDP-N-acetylmuramate-alanine ligase [Prochlorococcus marinus str.
           MIT 9515]
 gi|123199622|gb|ABM71230.1| Probable UDP-N-acetylmuramate-alanine ligase [Prochlorococcus
           marinus str. MIT 9515]
          Length = 469

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 92/345 (26%), Gaps = 20/345 (5%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           ++I GS GKT+T   L+  L       + I      I           +  + + E+  S
Sbjct: 119 LSIAGSHGKTSTSTFLSTLLELCTHDSSSITGGIIPI---YKSNAHIENTKYLVTEIDES 175

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG------LEKTGTIF 224
                 + +     +I +I  I   H  ++S I+EI S+  +                  
Sbjct: 176 DGTINNYTS-----NIGIINNIDFDHCDHYSNIDEILSSFKQFASNSKKLLINYDCKITR 230

Query: 225 LNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVV 284
            N+       +K K++        +  K                 +     L   S    
Sbjct: 231 ENFTSHNQWSIKEKNNITYSIIPNTINKDITIGKYYEHGDFVDSINIPIPGLHNLSNITA 290

Query: 285 HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDE 344
                  +  +       +  L            +          +     +    L   
Sbjct: 291 AIAACRMIGVSFKEIKKNIKSLELPKKRFEFRGELNQRVFYDDYAHHPNEIKATIDLARL 350

Query: 345 SYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV 404
               N  +      +++   PH   R    + +  +    +   ++         NI ++
Sbjct: 351 FIIDNNINKNQKGRLIAIFQPHRFTRVKQFIHEFVQELSKADVIYLTNIFGAGEENIDNI 410

Query: 405 WLSGFHVLALKDAL-PRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
                +   + + +  ++ +V   +    +         + D ++
Sbjct: 411 -----NSQVIANLIYKKNKNVTCLKNNYEIKDKFFKLTKENDFIL 450


>gi|311113341|ref|YP_003984563.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
 gi|310944835|gb|ADP41129.1| UDP-N-acetylmuramate--L-alanine ligase [Rothia dentocariosa ATCC
           17931]
          Length = 494

 Score = 37.1 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 75/444 (16%), Positives = 149/444 (33%), Gaps = 50/444 (11%)

Query: 57  ILHAVQKGAGLVVVNTDMVASIGSLSIPVF---GVDDVLGALNKLAVAARLRSKA----- 108
           I    + GA   V      A+I  +   V      +D    +   A   R+  ++     
Sbjct: 66  IQALREAGAR--VYTPQDAANIHDIDTVVISTAIHEDNPELIAARAQNLRVLHRSEALAA 123

Query: 109 -----TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFG 163
                 ++A+ G+ GK+TT  M+ + L  +    +                    +  + 
Sbjct: 124 AMGASQVVAVAGTHGKSTTSSMIAVMLDKLGFHPSFAVGTVIAGYGSNARLGATGEGSWF 183

Query: 164 IFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTI 223
           + E   S    +R+     +P IAV+T + P HL  +   E +  A       +   G +
Sbjct: 184 VAEADESDGSFVRY-----QPAIAVVTNVEPDHLDFYETPERVYEAFNRFVASMVPGGVL 238

Query: 224 FLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEV 283
              +DD     L  ++   GI+ + ++G+S  AD ++ +      +S   ++   +    
Sbjct: 239 VTCWDDEGARALAERARDAGIEVV-TYGQSTEADLRVSRITSHGSESSATLRWSFECASK 297

Query: 284 V--------HHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALN 335
                        G H   N         +  A  + A  AL  F   + R         
Sbjct: 298 HYEGEQDAQLRVPGIHNQLNAAAAFITALLAGAQPEDAAAALYGFGGADRRFTLRGDVAG 357

Query: 336 QGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEV 395
                 + + Y  +P  +  A+     ++   +G  + V+     +   +Q F  D A+ 
Sbjct: 358 IK----VFDDYAHHPTEVFRALETGRTVA---DGHNLYVVFQPH-LFSRTQEFAADFAQA 409

Query: 396 LSLYNISHVWLS---------GFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
           LS  + S+V            G     +  A      VHY+         I    V GD+
Sbjct: 410 LSKADRSYVLDIYPARELPIEGVTSELITGA--GFSEVHYASDAAAAIEDIAMCAVPGDI 467

Query: 447 VV-VKSSNSCGF-YRLINLLLEEF 468
           ++ + + +      R+++ L   +
Sbjct: 468 IMTIGAGDVTALGERILHELHARY 491


>gi|13471551|ref|NP_103117.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Mesorhizobium
           loti MAFF303099]
 gi|30316110|sp|Q98KB1|MURD_RHILO RecName: Full=UDP-N-acetylmuramoylalanine--D-glutamate ligase;
           AltName: Full=D-glutamic acid-adding enzyme; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase
 gi|14022293|dbj|BAB48903.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Mesorhizobium loti
           MAFF303099]
          Length = 466

 Score = 37.1 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 88/331 (26%), Gaps = 30/331 (9%)

Query: 100 VAARLRSKATIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVD 159
                   A  IAITG+ GK+TT  +    L S  +          +IG  +     P  
Sbjct: 106 ERILQAPTAPFIAITGTNGKSTTTALTAHILKSAGRDTQMG----GNIGRAVMTLDPPKP 161

Query: 160 VDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEK 219
               + E     +     L   + P   ++  + P HL     ++  AS K  +  G E 
Sbjct: 162 DRHFVVECSSYQID----LAPSINPTAGILLNLTPDHLDRHGTMQHYASIKERLVAGSET 217

Query: 220 TGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGK 279
                 +   +       ++    I+       +           +     + +V     
Sbjct: 218 AIIGIDDSWCAQIAERLERAGQQVIRISKRLPLTDGYFADGTNLMEAVHGRYSKVAFLEG 277

Query: 280 SMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFF 339
              +       +    +   L +            +  S      G   R      +   
Sbjct: 278 IGSLRGQHNAQNALAAVAACLKVGL-------DLGEIQSGLESFPGLAHRMEQVGRKDHV 330

Query: 340 TLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLY 399
             +++S   N  +   A+S   +I     G          E G             ++  
Sbjct: 331 LFVNDSKATNADAAAPALSSFPRIYWIAGGLP-------KEGG---IEPLRGFFPRIAKA 380

Query: 400 NISHVWLSGFHVLALKDALPRSIHVHYSETM 430
                +L G    A    L  ++    S T+
Sbjct: 381 -----YLIGEAAPAFSATLGEAVPYEISGTL 406


>gi|322510145|gb|ADX05459.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Bacillus mycoides]
          Length = 91

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 399 YNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSLVDGDVVVV 449
            ++  +   G     L  A  ++    +   +T+D   +   +   DGDV+++
Sbjct: 11  KHVKAIVTFGQTAPKLVRAAEKAGLDVIESVDTLDDAVVKAYAHSTDGDVILL 63


>gi|238785195|ref|ZP_04629187.1| Folylpolyglutamate synthase [Yersinia bercovieri ATCC 43970]
 gi|238713873|gb|EEQ05893.1| Folylpolyglutamate synthase [Yersinia bercovieri ATCC 43970]
          Length = 404

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 51/195 (26%), Gaps = 15/195 (7%)

Query: 261 RKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVF 320
            +  +  + S    +   +  +     +             +  +    +  +   +   
Sbjct: 209 YQRDKAWQFSQQANRWSWQCDDQQWRDLPLPNVPLANAATALAVLHYCGLPLSESVIRQG 268

Query: 321 HPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCE 380
                   R++    Q    L       NP + +     L+Q+    +G+  AV+G M  
Sbjct: 269 LQAARLPGRFQIVSEQPLLILD---VAHNPHAARYLTDRLAQLP--KQGKVRAVVG-MLS 322

Query: 381 MGELSQSFHIDLAEVLSLYNISHVWLS---GFHVLALKDALPRSIHVHYSETMDGLFLFI 437
             +++ +             +   + +   G                     ++  +   
Sbjct: 323 DKDIAGTL------ACLSEQVDEWYCALLEGPRGATAAQLAEHLTLSRQFSDVETAWRQA 376

Query: 438 QSSLVDGDVVVVKSS 452
                  DVV+V  S
Sbjct: 377 MQDAQPQDVVIVCGS 391


>gi|160942737|ref|ZP_02089979.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446011|gb|EDP23014.1| hypothetical protein FAEPRAM212_00213 [Faecalibacterium prausnitzii
           M21/2]
          Length = 461

 Score = 37.1 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 92/283 (32%), Gaps = 18/283 (6%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E       + P+++V+  I   HL  +  + E+  A        +       +  ++
Sbjct: 171 EACEFAETFLKLTPYLSVVLNIDNDHLDYYGSMGELKFAFKRFALMTQFMIFANADDKNT 230

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                         + + +F    +AD++     +     +     +  + +     +  
Sbjct: 231 M------DVMYTLDRRVRTFAIDNHADYRAVNVNEYKPGFFEFDLKEWNTTDTTRIRLSV 284

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANP 350
               N+   L + ++      +A +        +G G+R+          +ID+ Y  +P
Sbjct: 285 PGRHNIYNALAMCAVCRFVGLSAEQCAEAALNFKGAGRRFEVYGECNGALVIDD-YAHHP 343

Query: 351 ASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVW-LSG- 408
             ++A ++   ++     G +  +          ++    D  +VL + +I+ +  + G 
Sbjct: 344 TELRATLNTAKEM-----GYKRLIAVHQPFTYSRTKMLFNDFVDVLKIPDITVLTPIMGS 398

Query: 409 ---FHVLALKDALPRSIHVHY-SETMDGLFLFIQSSLVDGDVV 447
                       L   I       ++     +++ +   GD+V
Sbjct: 399 REPNDPTITSAKLAAQIPGSVLVNSLQEAADWVKQNAKPGDLV 441


>gi|225009953|ref|ZP_03700425.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
 gi|225005432|gb|EEG43382.1| Mur ligase middle domain protein [Flavobacteria bacterium MS024-3C]
          Length = 318

 Score = 37.1 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 59/143 (41%), Gaps = 7/143 (4%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMP--VDVDFGIFEL 167
           +I ITGS GKTTT  +    L S  K  A  G+        +  A +P    +D+ + EL
Sbjct: 104 LIGITGSNGKTTTTMLTHHILKSDGKAVAMGGNIGVSFAKLVYEAHLPEAEKIDYYVLEL 163

Query: 168 GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGLEKTGTIFLN 226
               L  I       RPHIA+IT I+P HL  +   ++   +AK  I      T  +  +
Sbjct: 164 SSFQLDNIE----NFRPHIAIITNISPDHLDRYGYEMDRYTAAKFRISMNQLPTDYLIYD 219

Query: 227 YDDSFFELLKAKSHALGIKTIYS 249
            D         +    G +  +S
Sbjct: 220 ADCEVIGAALDQFPETGKRIAFS 242


>gi|301168779|emb|CBW28370.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glut
           amyl-meso-diaminopimelate ligase [Haemophilus influenzae
           10810]
          Length = 453

 Score = 37.1 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 91/316 (28%), Gaps = 21/316 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFAVFY 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A      ++ +     G G RI  + +             ++A  L
Sbjct: 323 NSITVYDDFAHHPEA---ILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDEIAPAL 379

Query: 397 SLYNISHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                  V++         + D   + +   +++  +D L   I +     D ++V  SN
Sbjct: 380 GRA--DEVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSN 436

Query: 454 SCGFYRLINLLLEEFP 469
              F  +   +L++  
Sbjct: 437 GS-FGGIHQKILDKLK 451


>gi|297559874|ref|YP_003678848.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844322|gb|ADH66342.1| UDP-N-acetylmuramate/alanine ligase [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 486

 Score = 37.1 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 65/376 (17%), Positives = 131/376 (34%), Gaps = 32/376 (8%)

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A++G+ GKTTT  M+ + L  +      +                 +  D GI E+   
Sbjct: 118 VAVSGTHGKTTTTSMVAVVLQHVGADPGYVIGGKLVTT--------GLGADAGIGEVIAV 169

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
              E      ++ P IAV+T +   HL N+SGIEEI    A     +++     +   D 
Sbjct: 170 EADESDGSFLMLSPKIAVVTNVEADHLDNYSGIEEI---HANFASFVDRVERTLVVGVDD 226

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL-QGKSMEVVHHGIG 289
                 A+      K + ++G++++AD+++ + +     +   ++   G+ ++      G
Sbjct: 227 PGARRVAELARERGKRVLTYGEAEDADYRVTRVRARGFTTEFTIRTANGEPVDGQLAVPG 286

Query: 290 YHMAQNMLMTLGIVSILTAD-------VDTAIKALSVFHPKEGRGKRYRCALNQGFFTLI 342
            H   N    + +   L  D       +     A   F PK   G            T I
Sbjct: 287 RHNVLNAAAAVAVADELGHDLEVAVEGIADFAGAARRFEPKGEAGGVAVYDSYAHHPTEI 346

Query: 343 DESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAE---VLSLY 399
           +    A  A++++      +      G R+  L     +   ++ F  + A    +    
Sbjct: 347 EADLRATRAALESLAEEAREDGREHAGGRVVALFQPH-LYSRTRIFAEEFAAALGLADEV 405

Query: 400 NISHVWLSGFHVL--ALKDALPR---SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNS 454
            ++ V+ +          + +        V Y    D   L +      GD+V+   +  
Sbjct: 406 VVTEVYAAREDPEPGVTAELITSRVAHDRVWYVPGRDDAVLRVAELAGPGDIVLTMGA-G 464

Query: 455 --CGFY-RLINLLLEE 467
                  R++  L + 
Sbjct: 465 DVTELGPRIVEALAQR 480


>gi|281423137|ref|ZP_06254050.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella oris F0302]
 gi|281402473|gb|EFB33304.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella oris F0302]
          Length = 347

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 16/113 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHA 60
           ++   + Q IQG  I       VN  +     I    A    F A          +I + 
Sbjct: 3   FSAKQIAQFIQGR-IEGDENAMVNTFA----KIEEGVAGAISFLANP-------KYIHYL 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
               + +V+V+  +       +  +  V +    + KL        +     I
Sbjct: 51  YDTKSTIVLVDDQIKTDKPVHNTTIIRVANARDCVAKLLQMYDASMRQKKTGI 103


>gi|241765420|ref|ZP_04763390.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           delafieldii 2AN]
 gi|241364825|gb|EER59798.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Acidovorax
           delafieldii 2AN]
          Length = 176

 Score = 37.1 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 373 AVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMD 431
            +LG   +  + S      +A          V L G     ++ AL    + +  ++T+ 
Sbjct: 66  VILGGEGKGQDFSP-LAGPVARYAR-----VVVLMGRDAPLIRAALQDAGVPLVDAQTLP 119

Query: 432 GLFLFIQSSLVDGDVVVV 449
                       GD V++
Sbjct: 120 QAVQLAAQRAHAGDAVLL 137


>gi|299140607|ref|ZP_07033745.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella oris C735]
 gi|298577573|gb|EFI49441.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Prevotella oris C735]
          Length = 347

 Score = 37.1 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 16/113 (14%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA----FFAIKGPHYDGHDFILHA 60
           ++   + Q IQG  I       VN  +     I    A    F A          +I + 
Sbjct: 3   FSAKQIAQFIQGR-IEGDENAMVNTFA----KIEEGVAGAISFLANP-------KYIHYL 50

Query: 61  VQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAI 113
               + +V+V+  +       +  +  V +    + KL        +     I
Sbjct: 51  YDTKSTIVLVDDQIKTDKPVHNTTIIRVANARDCVAKLLQMYDASMRQKKTGI 103


>gi|203284712|ref|YP_002222452.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|203284717|ref|YP_002222457.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084155|gb|ACH93746.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
 gi|201084160|gb|ACH93751.1| UDP-N-acetylmuramate-alanine ligase (MurC) [Borrelia duttonii Ly]
          Length = 486

 Score = 37.1 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 64/388 (16%), Positives = 122/388 (31%), Gaps = 37/388 (9%)

Query: 73  DMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSS 132
            ++     L IPV    +V+    +++           I + GS GKTTT   L I   S
Sbjct: 106 PILLEAYELGIPVLSYPEVI---GEISKKYYS------IGVAGSHGKTTTAAFLGILFHS 156

Query: 133 IKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTI 192
           +      I   +         + +  + +  I E        + F      P I V+T I
Sbjct: 157 LGLQPNLILGSSVKN--LEDKSSLVGESNVFIAETCEYKGHFLSFS-----PDIIVLTNI 209

Query: 193 APAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGK 252
              H+  F   EE+     +    L+K G + +N D+S    +K K        ++S G 
Sbjct: 210 DYEHVDFFKNYEEVEDIFLQYVNNLKKNGILIINADESNLFNIKNKII-RKDIRVFSVGF 268

Query: 253 SKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDT 312
           +  +DF++  ++               S+++       H   N  + L  + +   +   
Sbjct: 269 NSLSDFKIEHFEI---GDGFLKFDFLGSIDIRLKTPLIHNVLNFSVALLALKLFLEEHKK 325

Query: 313 AIKAL-SVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRR 371
            +                 +  +            +      K   S L  +    +GR 
Sbjct: 326 LVWNFDERIKIVAREYMGIKRRMEFIMEKDGVIYLDDYAHHPKEIESTLLGLKKFYDGR- 384

Query: 372 IAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWL------SGFH------VLALKDALP 419
             VL  M      ++    +   VL   N+  + L                   L  +L 
Sbjct: 385 RIVLDFMPHTFTRTKVLFDEFVRVL--SNVDVLILHNIYLSVREDFDPKRLSRDLFLSLR 442

Query: 420 R-SIHVHYSETMDGLFLFIQSSLVDGDV 446
             + +V++   +     FI+  L   D+
Sbjct: 443 DLNQNVYFFAEIGDSVDFIKGLLKRNDL 470


>gi|6723456|emb|CAB66322.1| MurD protein [Corynebacterium glutamicum]
          Length = 110

 Score = 37.1 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 390 IDLAEVLS--LYNISHVWLSGFHVLALKDALPRSI---------HVHYSETMDGLFLFIQ 438
            D+A ++      I    + G     +  AL                  E M+ +     
Sbjct: 4   ADIAPLVKKHEQRIKAALVLGADRAEIVAALKEHAPQASVFVTDKTEPFEAMEEIVTEAF 63

Query: 439 SSLVDGDVVVV 449
           S    GD V++
Sbjct: 64  SISEPGDTVLL 74


>gi|163857845|ref|YP_001632143.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii
           DSM 12804]
 gi|226703282|sp|A9HYV0|RLME_BORPD RecName: Full=Ribosomal RNA large subunit methyltransferase E;
           AltName: Full=23S rRNA Um2552 methyltransferase;
           AltName: Full=rRNA (uridine-2'-O-)-methyltransferase
 gi|163261573|emb|CAP43875.1| ribosomal RNA large subunit methyltransferase j [Bordetella petrii]
          Length = 211

 Score = 37.1 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
            +  S  + +    +    F  + L     ++VK+ +  GF +++    + F 
Sbjct: 135 GVADSARIQHV--CELALDFACNHLKPDGALIVKAFHGSGFSQIVQSFKQRFK 185


>gi|91762379|ref|ZP_01264344.1| FolC bifunctional protein (Folylpolyglutamatesynthase/Dihydrofolate
           synthase) [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718181|gb|EAS84831.1| FolC bifunctional protein (Folylpolyglutamatesynthase/Dihydrofolate
           synthase) [Candidatus Pelagibacter ubique HTCC1002]
          Length = 422

 Score = 37.1 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 44/426 (10%), Positives = 100/426 (23%), Gaps = 62/426 (14%)

Query: 69  VVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTI 128
           +V          + + +    ++L  L         + + + I+I G+ GK +T + L  
Sbjct: 6   IVERLQKLHPKEIDLSLDRTKNLLEKLGN------PQDQISCISIVGTNGKFSTIQALYA 59

Query: 129 ALSSIKKTYAC------------------IGSYNNHIGVPLTLARMPVDVDFGIFEL--- 167
            L                             + +    +   +           FE+   
Sbjct: 60  ILKEADYKCNIYTSPHIQKINERFVFNNKPLTDDELANLFSEVEEANNQTQITFFEILTV 119

Query: 168 ----------------GMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKA 211
                                        L +   +++T I   HL      E+      
Sbjct: 120 AYFHYAKKYPENINLIESGLFHRFDATNILKKNLASIVTAIGLDHLDWLPKEEQTIEKII 179

Query: 212 EIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSW 271
                      I +            +       TI      K    +   +       +
Sbjct: 180 FEKTSTLLNSKIVVAKQS------SNEISKSIENTIKDNTSKKIIFNKNYNFTLKENDFF 233

Query: 272 MEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYR 331
                 G       +  G    +N+   +     LT    T     S     E   +   
Sbjct: 234 YFEDEFGALKLPKPNLPGEFQLENVSTAIATARQLTEYKITDEHIKSGITKIESIARLQE 293

Query: 332 CALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHID 391
               +      +     + +       VL++        +  +LG M      +   H +
Sbjct: 294 LKSGKLKDLTSNNLLFVDGSHNPLGAKVLNEYLQSLNCNKHIILGMM------ANKDHNE 347

Query: 392 LAEVLSLYNISHVWLSGFHVLALKD-----ALPRSIHVHYSETMDGLFLFIQSSLVDGDV 446
                                A+K       +    +++Y  +++     I   L + D+
Sbjct: 348 YMSYFKDIKSLTTIDIPNQPNAIKGSELKGKIKNFENINYKNSIEEAISSI--DLQENDI 405

Query: 447 VVVKSS 452
           +++  S
Sbjct: 406 ILITGS 411


>gi|312795059|ref|YP_004027981.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Burkholderia
           rhizoxinica HKI 454]
 gi|312166834|emb|CBW73837.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
           [Burkholderia rhizoxinica HKI 454]
          Length = 505

 Score = 37.1 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 86/303 (28%), Gaps = 26/303 (8%)

Query: 161 DFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKT 220
           D  + EL    L      +H   P  AVI  I   HL    G++  A+AK     G    
Sbjct: 180 DVWVLELSSFQL----ETSHTFEPDAAVILNITQDHLDWHGGLDAYAAAK-----GRIFG 230

Query: 221 GTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKS 280
                  +     ++        I   ++FG +   +      ++    +W+    +   
Sbjct: 231 LRTLRVLNRDDARVMACVPAGDAIAPYWTFGLNVPQNDGDYGIQRDGGIAWLLQAHERND 290

Query: 281 MEVVHHGIGYHMAQNMLMTLGIVSILT-------------ADVDTAIKALSVFHPKEGRG 327
                       +  +   + +  ++                +     A S+  P     
Sbjct: 291 ASEQRAMHRRRKSGGLAPDIALKRLMPVDALRIRGLHNATNAMAALALAQSIGLPLAALL 350

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
              R    +        S +       +  + +       +G    ++  +   G+    
Sbjct: 351 HGLREYRGEPHRVEWIGSIDGVDYIDDSKGTNVGATVAALDGLAQRIV--LIAGGDGKGQ 408

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDV 446
               LA  ++ +    V L G    AL+ AL    + +    ++        +    GD 
Sbjct: 409 DFAPLAAPVARW-CRAVMLIGRDAPALRAALADTGVELALHPSLQAATRAAAAVAQPGDA 467

Query: 447 VVV 449
           V++
Sbjct: 468 VLL 470


>gi|302383885|ref|YP_003819708.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302194513|gb|ADL02085.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 492

 Score = 37.1 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 11/160 (6%)

Query: 75  VASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALSSIK 134
           V    +  +PV G  D+      LA      ++  ++AITG+ GK+TT  ++   L    
Sbjct: 86  VDKARAADVPVIG--DIELFARALAA-IPADARPKVVAITGTNGKSTTTALIGWVLKQAG 142

Query: 135 KTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAP 194
            T         +IG+ +     P      + E+    L     LT    P +A++T I+P
Sbjct: 143 LTVHIG----GNIGIGVLALSAPTPDAVYVVEVSSYQLD----LTTSFAPDVAILTNISP 194

Query: 195 AHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
            HL    G+E   +AKA +F+ +       +  DD +   
Sbjct: 195 DHLDRHGGMEGYVAAKARLFQVMSPEKVALIGVDDDWGWK 234


>gi|298375356|ref|ZP_06985313.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_19]
 gi|301310629|ref|ZP_07216568.1| tetrahydrofolate synthase [Bacteroides sp. 20_3]
 gi|298267856|gb|EFI09512.1| tetrahydrofolate synthase [Bacteroides sp. 3_1_19]
 gi|300832203|gb|EFK62834.1| tetrahydrofolate synthase [Bacteroides sp. 20_3]
          Length = 438

 Score = 37.1 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 416 DALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
            A+ + +     ET++        S    D++ +  S
Sbjct: 384 KAMRKGLPGVLCETVEEAVEKALKSADKDDLIFIGGS 420


>gi|209525298|ref|ZP_03273840.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
 gi|209494313|gb|EDZ94626.1| UDP-N-acetylmuramoylalanine/D-glutamate ligase [Arthrospira maxima
           CS-328]
          Length = 454

 Score = 37.1 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 113/354 (31%), Gaps = 32/354 (9%)

Query: 93  GALNKLAVAARLRSKATIIAITGSVGKTTTKEMLTIALS---SIKKTYACIGSYNNHIGV 149
             + ++ +A R       + ITG+ GKTTT  ++        S       IG+    + +
Sbjct: 89  ETIGEMELAWRNLQDIPWVGITGTNGKTTTTALIAKIFEVAGSAAPACGNIGNAVCELAL 148

Query: 150 PLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASA 209
                     +D+ I E+    +      +  + P I + TT  P HL+    ++     
Sbjct: 149 -QQQQNSSTPLDWVIAEISSFQI----ESSSTLAPQIGIWTTFTPDHLNRHYTLDNYFRI 203

Query: 210 KAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQ 269
           KA +           +   +     L+  +  L  + +++           R+     ++
Sbjct: 204 KARL------MERSQVQVFNGDDAYLRRAAPELWPQAVWTSVNGAEELLGDRQRGVYIQE 257

Query: 270 SWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKR 329
           +W+       +       +G H  QN+LM +    I   D +    A+S F     R   
Sbjct: 258 NWVYQNGCAIAPVDSLKMVGDHNRQNLLMAVAAARIAGIDKEAIAHAISTFPGVPHR--- 314

Query: 330 YRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFH 389
                       I++S   N  + +  ++ +           I + G   + G+ +   +
Sbjct: 315 LEEVNTWMGIRWINDSKATNYDAAQVGLAAVEP-------PVILIAGGEAKAGDDTHWIN 367

Query: 390 IDLAEVLSLYNISHVWLSGFHVLALKDALPRSI--HVHYSETMDGLFLFIQSSL 441
               +  +      V L G         L  +   +V   ET++          
Sbjct: 368 TIHQKAAA------VLLIGTAAPTFAQRLQETDYHNVEIVETLENAIPRAAELA 415


>gi|319896772|ref|YP_004134966.1| udp-n-acetylmuramate:l-alanyl-gamma-d-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
 gi|317432275|emb|CBY80627.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3031]
          Length = 453

 Score = 37.1 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 88/316 (27%), Gaps = 21/316 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFVVFH 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A     ++ L+ +     G    +         +    H D     
Sbjct: 323 NSITVYDDFAHHPEA----ILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDDIAPA 378

Query: 397 SLYNISHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                  V++         + D   + +   +++  +D L   I +     D ++V  SN
Sbjct: 379 LGRA-DEVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSN 436

Query: 454 SCGFYRLINLLLEEFP 469
              F  +   +L++  
Sbjct: 437 GS-FGGIHQKILDKLK 451


>gi|254478616|ref|ZP_05091989.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035470|gb|EEB76171.1| FolC bifunctional protein [Carboxydibrachium pacificum DSM 12653]
          Length = 428

 Score = 37.1 bits (84), Expect = 6.4,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              L   + R+  V   + +D           + D+V+   S   
Sbjct: 370 AKDLASKISRN-SVFAVDQIDKAVNEALKMAGEEDMVLFCGSLYM 413


>gi|293392231|ref|ZP_06636565.1| FolC bifunctional protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952765|gb|EFE02884.1| FolC bifunctional protein [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 448

 Score = 37.1 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 77/295 (26%), Gaps = 17/295 (5%)

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
            LG     T++V  H+AVIT+I   H        E    +        K   I       
Sbjct: 145 GLGGRLDATNIVDNHMAVITSIDIDHTDFLGSTREQIGFEKAGIFRAHKPVIIGEPNIPQ 204

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGY 290
                     +        +  ++       +  Q  ++   +        ++       
Sbjct: 205 TMLNHANAIGSQLFCRHLDWMFNQQEQHWTWQTVQLEQKVRWDFLADLPLCQIPLANAAT 264

Query: 291 HMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESY---N 347
            +A    +   I           ++    F   +     +     Q   T +        
Sbjct: 265 AIAAVQKLPFDISLETVKKSLAEVELTGRFQTIKPAQLTHLAQKLQREVTTLPRIIIDVG 324

Query: 348 ANPASMKAAISVLSQISPHGEGRRIAVLGDMCE----------MGELSQSFHIDLAEVLS 397
            NP + +     L+ +     G+ IAV G + +          +  + +   + L     
Sbjct: 325 HNPHAARYLAEKLTALKAQSHGKLIAVCGILKDKDAVGVLTPLLSLIDEWRCVTLGGYRG 384

Query: 398 LYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
                           +      ++  +Y++++            + D V+V  S
Sbjct: 385 QRGADLFVTL----QQIAAQHHFNVQGNYADSVVEGIKSAVEISDENDTVLVFGS 435


>gi|310820716|ref|YP_003953074.1| tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309393788|gb|ADO71247.1| Tetrahydrofolylpolyglutamate synthase/dihydrofolate synthase
           [Stigmatella aurantiaca DW4/3-1]
          Length = 437

 Score = 37.1 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               AL  A      V+   ++D      +S    GDV++   S       LI  +   F
Sbjct: 378 PEAQALCAA------VYAYASLDDALAGARSQARPGDVILCTGSLF-----LIGAIRSRF 426


>gi|115375946|ref|ZP_01463194.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
 gi|115367029|gb|EAU66016.1| folylpolyglutamate synthase [Stigmatella aurantiaca DW4/3-1]
          Length = 409

 Score = 37.1 bits (84), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 11/60 (18%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEF 468
               AL  A      V+   ++D      +S    GDV++   S       LI  +   F
Sbjct: 350 PEAQALCAA------VYAYASLDDALAGARSQARPGDVILCTGSLF-----LIGAIRSRF 398


>gi|261344726|ref|ZP_05972370.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Providencia rustigianii DSM 4541]
 gi|282567168|gb|EFB72703.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Providencia rustigianii DSM 4541]
          Length = 345

 Score = 37.1 bits (84), Expect = 6.6,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 21/99 (21%)

Query: 7   FHDLLQAIQGHSIGIVPQGFVNGI----SIDSRSIAPQEAFFAIKGPHYDGHDFILHAVQ 62
             DL Q +     G      + GI    S +S+ I     F        D   +    V 
Sbjct: 6   LADLAQQLNAQLHG-DGDIVITGIAPMYSANSQQIT----FL------SD-SRYSDKLVD 53

Query: 63  -KGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
            + A +V+   D+ A      +    VD+   A  ++A 
Sbjct: 54  CQAAAVVLTEKDLSACK----VAALVVDNPYLAYARMAQ 88


>gi|306831679|ref|ZP_07464836.1| glycogen/starch/alpha-glucan phosphorylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978618|ref|YP_004288334.1| maltodextrin phosphorylase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|304426104|gb|EFM29219.1| glycogen/starch/alpha-glucan phosphorylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178546|emb|CBZ48590.1| maltodextrin phosphorylase [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 754

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 9/105 (8%)

Query: 365 PHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHV 424
             G G    +L     +G +  + ++++AE+     + +++  G     + D      +V
Sbjct: 597 ASGTGNMKFMLNGALTLGTMDGA-NVEIAELA---GMDNIYTFGKDSDTIIDLYATEGYV 652

Query: 425 H--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEE 467
              Y E  D +       +V  +  +VK  N+    RL N L+ +
Sbjct: 653 STDYYEN-DSVIKEAVDFIVSDE--LVKHGNAERLERLYNELINK 694


>gi|302142421|emb|CBI19624.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 49/233 (21%), Gaps = 20/233 (8%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V            + V   DD       L+++         I +        T    
Sbjct: 89  AVLVEKGKEQLYADAGVTVVEHDD-------LSLSKFSSPLTCNICVDDVSTNEMTIMDC 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                +   T   I     + G    +  M    +    E  +  L   R      R   
Sbjct: 142 GHYFCNNCWTGYFI--VKINDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDR 199

Query: 187 AVITTIAPA-----------HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++ +               H  N   +E     + E   GL+                +
Sbjct: 200 FLLESYIEDNRRVKWCPSVPHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRM 259

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                        +            K ++  E++     +     +      
Sbjct: 260 WELWGKKSQDGSETVNWITVHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLC 312


>gi|262371719|ref|ZP_06064998.1| folylpolyglutamate synthase [Acinetobacter junii SH205]
 gi|262311744|gb|EEY92829.1| folylpolyglutamate synthase [Acinetobacter junii SH205]
          Length = 428

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLE 466
           +  L +AL     VH   ++   F  +     +  +++V  S       +   L E
Sbjct: 373 MQQLNEALA-GQQVHEFSSIQQAFEIVLKQCNNNQLILVCGS-FHTLEAVWEYLEE 426


>gi|162455913|ref|YP_001618280.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
 gi|161166495|emb|CAN97800.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase [Sorangium cellulosum 'So ce 56']
          Length = 495

 Score = 37.1 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 31/290 (10%), Positives = 79/290 (27%), Gaps = 19/290 (6%)

Query: 179 THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAK 238
               +P + V+T++   H+  +       +A     E + +T  +     D     L ++
Sbjct: 195 FWHYQPEVGVVTSMEHDHIDIYPDAASYEAAFRGFVERIPETELVVAAAHDPRVVELVSR 254

Query: 239 SHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHM-AQNML 297
           S    +      G   +                 +         +            N+ 
Sbjct: 255 SARAEVAWFALEGDDTHGRPPHWLAAPAEAGESGQSFDLYAGGVLAGRFALQMPGHHNVR 314

Query: 298 MTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAI 357
             +  ++         +   +         +R +  L +     + + +  +P ++   +
Sbjct: 315 NAIAAIAAAAQGFGVPLSTATTALAGFAGVRRRQDLLFEARGVRVYDDFAHHPTAVDETL 374

Query: 358 SVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHV--------WLSGF 409
             L   S H  G   AV           ++ H +            V          +G 
Sbjct: 375 RALR--SRHPAGALWAVF--EPRSATACRALHQEPYARAFEAADRVVLAPLGRPDIAAGE 430

Query: 410 HV---LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV-VVKSSNSC 455
            +     ++D          + ++D +   I     +GD + ++  SN  
Sbjct: 431 RLDLDRLVRDIERGGKRAEAAASVDAIVTAIARDAREGDTIALL--SNGA 478


>gi|226356422|ref|YP_002786162.1| UDP-N-acetylmuramate--L-alanine ligase [Deinococcus deserti VCD115]
 gi|226318412|gb|ACO46408.1| putative UDP-N-acetylmuramate--L-alanine ligase (UDP-N-
           acetylmuramoyl-L-alanine synthetase) [Deinococcus
           deserti VCD115]
          Length = 476

 Score = 37.1 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 127/429 (29%), Gaps = 52/429 (12%)

Query: 34  SRSIAPQEAFFAIKGPHYDGHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLG 93
           +R +  +    A+      GHD    A      ++V +  +  S              L 
Sbjct: 65  TRQLEREGISVAL------GHD---AAHMADVDVLVASEAVPKSHPE-----------LV 104

Query: 94  ALNKLAVAARLRSKA--------TIIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNN 145
           A  +  V  R R             + + G+ GKTTT  M+ +AL           S   
Sbjct: 105 AAREAGVQVRPRMGLLDELLRAGPSVGVIGTHGKTTTTSMIAVALQGAGLD----PSAFV 160

Query: 146 HIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEE 205
              VP   +   +     + E+  S                A    +     + +  +EE
Sbjct: 161 GGIVPEFASNARIGSGPFVAEVDESDRAFAELGCETAVFTNAEDDHVGGNQATYWETVEE 220

Query: 206 IASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQ 265
                A     + ++  +    D    E L       G     ++G+++ AD++      
Sbjct: 221 ---QHAGFARFVSQSDRVLFCADWPGLETL-----CEGAAERLTYGQAEGADYRAVNLHP 272

Query: 266 CSEQSWMEVQLQGKS-MEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
            +E +   V  +G+   +      G H   N L  L +  +   +   A  AL+ F    
Sbjct: 273 DAEGTSFTVHWRGEELGQARVGLPGVHNVLNALAALAVAHLYGGNFTQAAGALASFGGPG 332

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
            R +R               +     A+++AA     ++    +  R             
Sbjct: 333 RRWQRIGELNGALIIDDYAHNATKVAAAVQAARQTGRRVRVVFQPHRYLRTQQSWPRLAD 392

Query: 385 SQSFHIDL----AEVLSLYNISHVWLSGFHVLALKDALPRSIH--VHYSETMDGLFLFIQ 438
           +     ++        S   I      G H   +   +    H  VHY      +   ++
Sbjct: 393 ALMDADEVLLLDIAAASEAPIE-----GIHATLISTRMTEQGHTGVHYLPDRADVLQLLR 447

Query: 439 SSLVDGDVV 447
            +   GD++
Sbjct: 448 DTAAPGDII 456


>gi|332667280|ref|YP_004450068.1| FolC bifunctional protein [Haliscomenobacter hydrossis DSM 1100]
 gi|332336094|gb|AEE53195.1| FolC bifunctional protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 427

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 83/304 (27%), Gaps = 30/304 (9%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG--IEEIASAKAEIFEG 216
            V+  + E+    LG     T+++RP ++VIT I+  H+        E  +     I   
Sbjct: 136 KVEAAVIEV---GLGGRLDSTNVIRPELSVITNISFDHMQFLGETLPEIASEKAGIIKTN 192

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +              F     + HA        +      +          +   +    
Sbjct: 193 VPVVIGETHPESAPVFLAKAQEEHAPIQFADQHYRAKLIGEDLYHTEFDVYQNEQLRYPA 252

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++   +           +  L         +D  +    +   K       R  L  
Sbjct: 253 LRCNLHGDYQVFNLQTVLQAVDCLPAA----WGIDEKVIRTGLLDLKHLTRFMGRWQLLA 308

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              ++I +S +            ++Q+      +   V+G + +          DL +++
Sbjct: 309 QHPSIIADSAHNEAG----LALAMNQLQKIPHRQLHLVIGVVKD---------KDLQKMI 355

Query: 397 SLYNISHVWLS-------GFHVLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVV 448
            L  I  ++         G     L+ A            ++       +      DV+ 
Sbjct: 356 PLLPIDGIYYFAKPDIPRGLEATILQKAAAEQGRKGKAYTSVKNALKAARRKAQPEDVIY 415

Query: 449 VKSS 452
           V  S
Sbjct: 416 VGGS 419


>gi|297621140|ref|YP_003709277.1| hypothetical protein wcw_0909 [Waddlia chondrophila WSU 86-1044]
 gi|297376441|gb|ADI38271.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 538

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/261 (6%), Positives = 49/261 (18%), Gaps = 1/261 (0%)

Query: 115 GSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGE 174
            S+ +   K++   A            + +    V     R P    +            
Sbjct: 65  QSINERIPKQLDIQAEWISGYWQWDFNANDFVW-VSGVWRRPPPGHQWVSGLWKKYGSEW 123

Query: 175 IRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFEL 234
           +R   +  +        I+               +    +          L         
Sbjct: 124 VRVPGYWSKVPEQSADFISVPPPDPLDENTASPPSSNVFWVNGHWYFMFNLQEFHWVPGH 183

Query: 235 LKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQ 294
                    +   +   +     +    W    E+            +  +H +    + 
Sbjct: 184 WDEFDPQWVLVPAHYVWRPGGYVYVPAYWDWPIEERGTAYTSVKIDPDYRYHVVFEPTSI 243

Query: 295 NMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMK 354
                +     L              +  +            G+ T    +++ + A   
Sbjct: 244 LKSEIIVKQLFLHYPDYLCFFHHHYHYHLDFWKAFCCYPPWWGWDTWWGFTWHDHWALWW 303

Query: 355 AAISVLSQISPHGEGRRIAVL 375
                             ++L
Sbjct: 304 WYTHPGYPQPLWMTKEISSIL 324


>gi|256839659|ref|ZP_05545168.1| folylpolyglutamate synthase [Parabacteroides sp. D13]
 gi|256738589|gb|EEU51914.1| folylpolyglutamate synthase [Parabacteroides sp. D13]
          Length = 439

 Score = 37.1 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 86/304 (28%), Gaps = 26/304 (8%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD+ + E+    LG     T+++ P +++IT I+  H       EE  +A+       
Sbjct: 135 QQVDYAVIEV---GLGGRLDSTNIITPILSIITNISLDHTQFLGDTEEKIAAEKAGIIKK 191

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                +      S +++ K K+  +G      F  ++  D    + +      W    ++
Sbjct: 192 GVPALLGEAEKQSVYDVFKNKAEEVGAP----FYYAQRMDMVKDECRLTVGGKWFFPSVE 247

Query: 278 GKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++    G         +L  + I+                F                
Sbjct: 248 YGEIQGELGGEVQVRNAVTVLSAIHILRTELGIDIIPEAVHEGFAHVTKLTGLMGRWQTL 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +      N    +     L  +  +  G+   ++G + +          D+  VL
Sbjct: 308 QSKPTVICDTGHNVGGWEHLAEHLKVLRQYC-GQIYMIVGMVND---------KDIDGVL 357

Query: 397 SLYNISHVWLSGFHV--------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           SL      +                   A+   +     +T+            + D++ 
Sbjct: 358 SLMPQDAFYFFTQASVERAMPVEDFAVKAMRHGLSGTLCDTVQDAVEKALRRARENDLIF 417

Query: 449 VKSS 452
           +  S
Sbjct: 418 IGGS 421


>gi|269219534|ref|ZP_06163388.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 848 str. F0332]
 gi|269211113|gb|EEZ77453.1| UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Actinomyces sp.
           oral taxon 848 str. F0332]
          Length = 163

 Score = 36.8 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 349 NPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSG 408
           + +    A +  + +    +G  + ++G + + G        D++  L       V + G
Sbjct: 32  DDSKATNAHAARASLGAQADGTTVWIVGGLAKGGRFED-LVADVSGKLRA-----VVVIG 85

Query: 409 FHVLALKDALPR-SIHVHYSET-----MDGLFLFIQSSLVDGDVVVV 449
                 K AL    + V Y +      MD      +S    GDVV++
Sbjct: 86  VDQEPWKSALASIDVPVTYIDPASPAPMDDAVAAARSHARRGDVVLL 132


>gi|78046614|ref|YP_362789.1| folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035044|emb|CAJ22689.1| folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 432

 Score = 36.8 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 408 GFHVLALKDALPRSIHVH--YSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G    AL   L  S   H      +      +      GD V+V  S    F+ + + L
Sbjct: 371 GQSAQALHARLQGSAAAHAPCHRDVASAVRAVLDRASPGDRVLVFGS----FHTVADAL 425


>gi|225458418|ref|XP_002283665.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 564

 Score = 36.8 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 49/233 (21%), Gaps = 20/233 (8%)

Query: 67  LVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAITGSVGKTTTKEML 126
            V+V            + V   DD       L+++         I +        T    
Sbjct: 89  AVLVEKGKEQLYADAGVTVVEHDD-------LSLSKFSSPLTCNICVDDVSTNEMTIMDC 141

Query: 127 TIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHI 186
                +   T   I     + G    +  M    +    E  +  L   R      R   
Sbjct: 142 GHYFCNNCWTGYFI--VKINDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDR 199

Query: 187 AVITTIAPA-----------HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELL 235
            ++ +               H  N   +E     + E   GL+                +
Sbjct: 200 FLLESYIEDNRRVKWCPSVPHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRM 259

Query: 236 KAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGI 288
                        +            K ++  E++     +     +      
Sbjct: 260 WELWGKKSQDGSETVNWITVHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLC 312


>gi|264679357|ref|YP_003279264.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine [Comamonas testosteroni
           CNB-2]
 gi|262209870|gb|ACY33968.1| UDP-3-O-(3-hydroxymyristoyl) glucosamine [Comamonas testosteroni
           CNB-2]
          Length = 333

 Score = 36.8 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 14/104 (13%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M+ L     +L A+ G  +G   +  ++ I+ +DS      +  F +          +  
Sbjct: 1   MSVL--LGQILDALGGELVGGEREMPISRIAPLDS--AGHGDLSFLSNP-------RYRQ 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAA 102
                 A  V+V   M               D      +     
Sbjct: 50  QLAASQAACVIVAPTMRDEAAQRGA-CIVTADPYAYFARATQWW 92


>gi|188992797|ref|YP_001904807.1| Folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734557|emb|CAP52767.1| Folylpolyglutamate synthase/dihydrofolate synthase bifunctional
           protein [Xanthomonas campestris pv. campestris]
          Length = 433

 Score = 36.8 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G    AL+  L    +        + G    + +    GD V+V  S    F+ + + L 
Sbjct: 372 GQSAEALRARLQGTAAAQAACHGDVAGALHAVLAEAQPGDRVLVFGS----FHTVADALQ 427

Query: 466 E 466
            
Sbjct: 428 A 428


>gi|323139874|ref|ZP_08074902.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
 gi|322394870|gb|EFX97443.1| amino acid adenylation domain protein [Methylocystis sp. ATCC
           49242]
          Length = 1270

 Score = 36.8 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 107/345 (31%), Gaps = 21/345 (6%)

Query: 110 IIAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGM 169
           +I + GS GKTTT  ML   L      ++   +          +     +    + E   
Sbjct: 90  VIGVAGSHGKTTTAAMLAAILEHA--GFSPGFTIGAAAPALGDVNARWSEGSLFVAESC- 146

Query: 170 SHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDD 229
               E       VRP   ++T +   H  ++ G + + +A A + E     G I L  DD
Sbjct: 147 ----EAFRALDHVRPAHCLVTNVDDEHSEHYGGRDRLEAAFAAMIERTRSDGHIVLCGDD 202

Query: 230 SFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIG 289
            F   +  K  +  +   +    S  AD   R        ++  +        +     G
Sbjct: 203 PFLAAMAEKPGSRAVTYGFGDKSSWRADRIERGRDAV---AFDAIAWGRPLGRIRLKAPG 259

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H A N L  L + + L A  D A  AL  F P   R       + +     I + +  +
Sbjct: 260 AHNAANALGALALANALGAPFDAAALALERFIPVGRRW----ERVGEADGVRIFDDFAHH 315

Query: 350 PASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGF 409
           P  + A ++     +  G      V            + +     +     +  V  +G 
Sbjct: 316 PTEIAATLAAARDSAEAGGKVVAIVEPLSHARICRLATHYARALSMADYTIVLPVDGAGE 375

Query: 410 HVLA------LKDALPR-SIHVHYSETMDGLFLFIQSSLVDGDVV 447
              A      L D   R  +              + +    GDVV
Sbjct: 376 PTPADSSDALLHDVFRRSGLRFACCNGPTDAASTVAALAGPGDVV 420


>gi|20807265|ref|NP_622436.1| folylpolyglutamate synthase [Thermoanaerobacter tengcongensis MB4]
 gi|20515773|gb|AAM24040.1| Folylpolyglutamate synthase [Thermoanaerobacter tengcongensis MB4]
          Length = 431

 Score = 36.8 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)

Query: 411 VLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
              L   + R+  V   + +D           + D+V+   S   
Sbjct: 373 AKDLASKISRN-SVFAVDQIDKAVNEALKMAGEEDMVLFCGSLYM 416


>gi|311742797|ref|ZP_07716606.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
 gi|311314425|gb|EFQ84333.1| UDP-N-acetylmuramate--L-alanine ligase [Aeromicrobium marinum DSM
           15272]
          Length = 467

 Score = 36.8 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 68/396 (17%), Positives = 132/396 (33%), Gaps = 35/396 (8%)

Query: 64  GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKL--AVAARLRSKA-TIIAITGSVGKT 120
           G   V+ +T +             V+ +   L     +   R      T +A+ G+ GKT
Sbjct: 74  GVSTVIASTAVRDDNPE------IVEALRRGLRLWPRSAGLRSVMDGHTTVAVAGTHGKT 127

Query: 121 TTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTH 180
           TT  MLT AL       +               A +  +   G  E+ ++   E      
Sbjct: 128 TTTAMLTCALVGAGVDPSFAIGAEV--------ASLGANARRGTGEVLVAEADESDGAFL 179

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
           +  P  AV+T +   HL  +   E  A+A  E          + L+ DD     L A + 
Sbjct: 180 VYHPAAAVVTNVDADHLDTWGTEEAYAAAFTEFIG--TVAEFVVLSADDPGARALAAPAA 237

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
             G++ + +                 +  ++   + + +   V     G H  Q+ LM L
Sbjct: 238 ERGLEVLLAGFADDAEVRGTDVVVDGTRSTFTAWRGRERLGPVELAVPGDHYVQDALMAL 297

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
                L AD    +  L+ +     R +          +    +SY  +P  ++A ++  
Sbjct: 298 AAGLRLGADPHGLVAGLATYTGAHRRMQPLGEVAGVRVY----DSYAHHPTEIRADLAAA 353

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYN---ISHVWLSGFHV-----L 412
            Q++    G    V+     +   ++ F   +   LS  +   ++ ++L+          
Sbjct: 354 RQVA----GDDRLVVAFQPHLVSRTRIFGAAMGAELSAADLVVVADLYLAREDPDPQVGA 409

Query: 413 ALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
            L       + V     +  L   +   L  GD+++
Sbjct: 410 ELVADAVVGVPVLLGGAVADLPALLLDHLRPGDLLL 445


>gi|282890068|ref|ZP_06298601.1| hypothetical protein pah_c010o061 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500074|gb|EFB42360.1| hypothetical protein pah_c010o061 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 357

 Score = 36.8 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 20/111 (18%)

Query: 5   WTFHDLLQAIQGHSIGIVPQGFVNGISIDSRSIAPQEA---FFAIK---GPHYDGHDFIL 58
           +T  +L +  Q   +G  PQ  + G++     +   E    F +        YD      
Sbjct: 6   FTLAELAEMTQAKLVGN-PQHLITGVAD---LVTAGENDASFLSKPKYTTARYD------ 55

Query: 59  HAVQK-GAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKA 108
            A++K  AG+V ++ D   S    +  V  V+D   A  K   A    SK 
Sbjct: 56  EAMRKSKAGVVFISDD---SAYDENRNVLIVEDPSRAFQKTVEAFFEESKG 103


>gi|257466675|ref|ZP_05630986.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917828|ref|ZP_07914068.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691703|gb|EFS28538.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 433

 Score = 36.8 bits (83), Expect = 7.5,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 37/297 (12%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLE 218
           + ++ + EL    L       +   P+I+++T + P HL+ +  +++    K  I +  +
Sbjct: 139 NYEYAVLELSSYQL----ENVYEFTPYISLVTNLTPDHLTRYETLKDYYDTKFRICQNQK 194

Query: 219 KTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQG 278
           +  + FL   D   E L+ + + +  K I    +               E+         
Sbjct: 195 EENSFFLYNIDH--EELRKRENLMKGKKISLSKEQDADTCVRNGKIIFQEE--------- 243

Query: 279 KSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGF 338
               +    +      N+  +L I++                   E    R       G 
Sbjct: 244 --EIMQVSELSLKGNHNLENSLFIITAGKLLGLDTKVIREFLMNTEPLEHRMERCFQYGK 301

Query: 339 FTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSL 398
              I++S   N  S K A+           G    V  D+  + +            + +
Sbjct: 302 VQFINDSKGTNIDSAKFALEAYPGCILICGGFDKKV--DLNPLAD------------III 347

Query: 399 YNISHVWLSGFHVLALKDALPR----SIHVHYSETMDGLFLFIQSSLVDGD--VVVV 449
             +  V+L G     +K  L      + H++  ET++   L ++      D  ++++
Sbjct: 348 KQVKEVYLIGVIADKIKALLLERNYPADHIYSLETIENSLLDMKKRFTKEDEELILL 404


>gi|255014001|ref|ZP_05286127.1| folylpolyglutamate synthase [Bacteroides sp. 2_1_7]
          Length = 439

 Score = 36.8 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 86/304 (28%), Gaps = 26/304 (8%)

Query: 158 VDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGL 217
             VD+ + E+    LG     T+++ P +++IT I+  H       EE  +A+       
Sbjct: 135 QQVDYAVIEV---GLGGRLDSTNIITPILSIITNISLDHTQFLGDTEEKIAAEKAGIIKK 191

Query: 218 EKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQ 277
                +      S +++ K K+  +G      F  ++  D    + +      W    ++
Sbjct: 192 GVPALLGEAEKQSVYDVFKNKAEEVGAP----FYYAQRMDMVKDECRLTVGGKWFFPSVE 247

Query: 278 GKSMEVVHHGIGYHMA-QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
              ++    G         +L  + I+                F                
Sbjct: 248 YGEIQGELGGEVQVRNAVTVLSAIHILRTELGVDIIPEAVHEGFAHVTKLTGLMGRWQTL 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
                +      N    +     L  +  +  G+   ++G + +          D+  VL
Sbjct: 308 RSKPTVICDTGHNVGGWEHLAEHLKVLRQYC-GQIYMIIGMVND---------KDIDGVL 357

Query: 397 SLYNISHVWLSGFHV--------LALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           SL      +                   A+   +     +T+            + D++ 
Sbjct: 358 SLMPQDAFYFFTQASVERAMPVEDFAVKAMRHGLSGTLCDTVQDAVEKALRRARENDLIF 417

Query: 449 VKSS 452
           +  S
Sbjct: 418 IGGS 421


>gi|123441648|ref|YP_001005633.1| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
           [Yersinia enterocolitica subsp. enterocolitica 8081]
 gi|122088609|emb|CAL11404.1| putative FolC bifunctional protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 422

 Score = 36.8 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 57/203 (28%), Gaps = 17/203 (8%)

Query: 255 NADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAI 314
           +   +   W+     S+ + +     +          +    L        +      ++
Sbjct: 219 HLYQRDIAWQFSQHGSFDQPKNGWNWLCGDRQLNDLPLPNVPLANAATALAVLHYSGLSL 278

Query: 315 KALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAV 374
               +    +      R  +      LI +    NP + +     L+Q+    +G+  AV
Sbjct: 279 SEDVILQGLQAASLPGRFQIISEQPLLILDV-AHNPHAARYLTDKLAQLP--KQGKVRAV 335

Query: 375 LGDMCEMGELSQSFHIDLAEVLS--LYNISHVWLS---GFHVLALKDALPRSIHVHYSET 429
           +G + +          D+   L+     +   + +   G    + +              
Sbjct: 336 VGMLSD---------KDIGGTLACLSEQVDEWYCAPLEGPRGASAEQLAEHLAQSRQFSD 386

Query: 430 MDGLFLFIQSSLVDGDVVVVKSS 452
           ++  +          DVV+V  S
Sbjct: 387 VETAWRQAMQDAEPQDVVIVCGS 409


>gi|221635661|ref|YP_002523537.1| folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)
           [Thermomicrobium roseum DSM 5159]
 gi|221157604|gb|ACM06722.1| folylpolyglutamate synthase (folylpoly-gamma-glutamatesynthetase)
           [Thermomicrobium roseum DSM 5159]
          Length = 454

 Score = 36.8 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 14/47 (29%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSC 455
             +LA   A           +++             D+V+V  S S 
Sbjct: 385 ERLLAAWAASTVGKPAASYRSVEDALRAALEQADPADLVLVTGSLSM 431


>gi|238060680|ref|ZP_04605389.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
 gi|237882491|gb|EEP71319.1| UDP-N-acetylmuramoyl-L-alanine ligase [Micromonospora sp. ATCC
           39149]
          Length = 484

 Score = 36.8 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 126/416 (30%), Gaps = 44/416 (10%)

Query: 53  GHDFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGA--LNKLAVAARLRSKATI 110
           GHD    A  +GA  VV  T    +    +    G+  V  A  L+KLA   R      +
Sbjct: 65  GHD---AAYVEGASCVVHTTGARHAPEVRAARAAGIPVVRRAQVLDKLADGRR------L 115

Query: 111 IAITGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMS 170
           +A++GS GK+TT  ML   L ++ +           +  P + A +       + E   S
Sbjct: 116 VAVSGSHGKSTTAGMLVHILRTLGQDPTY--LIGADLTGPGSGAHLGRS-RLLVAEADES 172

Query: 171 HLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDS 230
           +        HL+ P +AV+T +   H S  S  + + +              I       
Sbjct: 173 Y-----RSFHLLSPSLAVVTNVTDDHPSFVSRADVLRAYVEFGCRVAPDGFLIVNADCVG 227

Query: 231 FFELLKAKSHALGIKTIYSFGKSKNADFQLRK-WKQCSEQSWMEVQLQGKSMEVVHHGIG 289
                +  +       +   G+ + AD +L     +    S       G    +      
Sbjct: 228 ATVAAQVIADERPDLMVLRCGRDRAADVRLLDVHAEGWSVSATVRMPNGTETRLTLPTPA 287

Query: 290 YHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNAN 349
            H   +    +     L  D      A+  F     R +             + +SY ++
Sbjct: 288 THHLHDAAAAVACAVALGLDPADVTAAVGTFAGVRRRFEHIDTRAG----VTVIDSYASH 343

Query: 350 PASMKAAISVLSQISPHG------EGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISH 403
           P  + A +     ++               VL  + E      +    +  VL+  N  +
Sbjct: 344 PNEIAADLQAARTLARGRVFVVFQPSGHARVLA-LGERIGRVLALDERIGRVLAD-NADY 401

Query: 404 VWLSG-----------FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVV 448
           V L                 A+   L    +       D     I      GDVV+
Sbjct: 402 VLLLDVPDNLSDGRPLADTDAIAARLRDGAYCLPLG-PDHAARVIARMAGRGDVVL 456


>gi|145628987|ref|ZP_01784786.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148827263|ref|YP_001292016.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
 gi|144978490|gb|EDJ88213.1| UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein
           [Haemophilus influenzae 22.1-21]
 gi|148718505|gb|ABQ99632.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittGG]
          Length = 453

 Score = 36.8 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 88/316 (27%), Gaps = 21/316 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFAVFH 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A     ++ L+ +     G    +         +    H D     
Sbjct: 323 NGITVYDDFAHHPEA----ILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDDIAPA 378

Query: 397 SLYNISHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                  V++         + D   + +   +++  +D L   I +     D ++V  SN
Sbjct: 379 LGRA-DEVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSN 436

Query: 454 SCGFYRLINLLLEEFP 469
              F  +   +L++  
Sbjct: 437 GS-FGGIHQKILDKLK 451


>gi|332826755|gb|EGJ99572.1| hypothetical protein HMPREF9455_04068 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 430

 Score = 36.8 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 4/48 (8%)

Query: 417 ALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           A  + +  +   T+       +      D V +  SN      + + L
Sbjct: 381 AQKKGLMGYSYPTVAEAVRAAKDWAASNDFVFIGGSNFV----VADAL 424


>gi|84389782|ref|ZP_00991334.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           splendidus 12B01]
 gi|84376883|gb|EAP93757.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Vibrio
           splendidus 12B01]
          Length = 343

 Score = 36.8 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 1   MNPLWTFHDLLQAIQGHSIGIVPQGFVNGIS-IDSRSIAPQEA-FFAIKGPHYDGHDFIL 58
           M  L T  +L     G   G      V+ ++ +D          F      +     +  
Sbjct: 1   MKNL-TLAELATITGGELHGDGT-VTVSAVAPMD--KAQEGNITFL----SNV---KYSK 49

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV 100
           H     A  ++V         +    V  V D   A  K+A 
Sbjct: 50  HLGDCKASAIMVKESERELCKTN---VIVVSDPYVAFAKVAQ 88


>gi|145296122|ref|YP_001138943.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum R]
 gi|140846042|dbj|BAF55041.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 472

 Score = 36.8 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 390 IDLAEVLS--LYNISHVWLSGFHVLALKDALPRSI---------HVHYSETMDGLFLFIQ 438
            D+A ++      I    + G     +  AL                  E M+ +     
Sbjct: 366 ADIAPLVKKHEQRIKAALVLGADRAEIVAALKEHAPQASVFVTDKTEPFEAMEEIVTEAF 425

Query: 439 SSLVDGDVVVV 449
           S    GD V++
Sbjct: 426 SISEPGDTVLL 436


>gi|19553360|ref|NP_601362.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|62390999|ref|YP_226401.1| UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326338|emb|CAF20500.1| UDP-N-ACETYLMURAMOYLALANINE D-GLUTAMATE LIGASE [Corynebacterium
           glutamicum ATCC 13032]
          Length = 472

 Score = 36.8 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 390 IDLAEVLS--LYNISHVWLSGFHVLALKDALPRSI---------HVHYSETMDGLFLFIQ 438
            D+A ++      I    + G     +  AL                  E M+ +     
Sbjct: 366 ADIAPLVKKHEQRIKAALVLGADRAEIVAALKEHASQASVFVTDKTEPFEAMEEIVTEAF 425

Query: 439 SSLVDGDVVVV 449
           S    GD V++
Sbjct: 426 SISEPGDTVLL 436


>gi|308273170|emb|CBX29773.1| hypothetical protein N47_F14680 [uncultured Desulfobacterium sp.]
          Length = 437

 Score = 36.8 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 107/303 (35%), Gaps = 35/303 (11%)

Query: 159 DVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSG-IEEIASAKAEIFEGL 217
            VD+ + E GM   G     T++++P I ++T I+  H       IE+IA  K  I +  
Sbjct: 142 KVDWAVIETGM---GGRLDATNVIQPEITIVTNISLEHKKYLGTTIEQIAGEKGGIIKRG 198

Query: 218 EKTGTIFLNYD-DSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +   T     +  +    + AK  A       +F           K K+  + ++    +
Sbjct: 199 KPVITGAKQKNAINTLNNIAAKKRAPIYLLGNNF-----------KIKKKKDGTFSYFGI 247

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
                ++  +  G H  +N  + L    IL    + + K +     +     R     + 
Sbjct: 248 NNVWPDMQINLHGDHQIENAALVLAACEILEKKTNLSEKHIRAGLKQTNWPGRLEIVSSS 307

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
               L          ++ A+ ++ + +S   +GR+I V+  M +        +  + + +
Sbjct: 308 PCVIL------DGAHNLNASQALHNFLSKEYKGRKITVVTGMLD-----DKPYKSMLKNI 356

Query: 397 SLYNISHVWLSGFHVLALKD-----ALPRS--IHVHYSETMDGLFLFIQSSLVDGDVVVV 449
              +     L+   +    +     A+ ++    +     +D    +   + +  +V+ +
Sbjct: 357 LSVS-DRAILTKPQIDRALEPEKLYAVSKNLVKDIKIIPKVDEAVKYALETALPDEVICI 415

Query: 450 KSS 452
             S
Sbjct: 416 TGS 418


>gi|145640000|ref|ZP_01795598.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
 gi|145270887|gb|EDK10806.1| high-affinity zinc transporter periplasmic component [Haemophilus
           influenzae PittII]
          Length = 453

 Score = 36.8 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 88/316 (27%), Gaps = 21/316 (6%)

Query: 159 DVDFGIFELGMSHLGEIRFL--THLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEG 216
           D  + + E                   P   ++  I+  H   F  ++ I      +   
Sbjct: 152 DSPYFVIEADEYDTAFFDKRSKFVHYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRT 211

Query: 217 LEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQL 276
           +  +G +  +  +   +   A          +S  +    D +    +  ++ S   V  
Sbjct: 212 IPASGLVLSSASEQSAKETLALGC-------WSQQQFLGKDNEWFAERITNDASHFAVFH 264

Query: 277 QGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQ 336
            G+ +  V   +      +    L  ++           A           +R       
Sbjct: 265 HGEKVAEVKWNVVGQHNMH--NALMAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEV 322

Query: 337 GFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVL 396
              T+ D+  +   A     ++ L+ +     G    +         +    H D     
Sbjct: 323 NGITVYDDFAHHPEA----ILATLTALRDKVGGGVRILAVLEPRSNTMKMGVHKDDIAPA 378

Query: 397 SLYNISHVWLSGFH--VLALKDALPRSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSN 453
                  V++         + D   + +   +++  +D L   I +     D ++V  SN
Sbjct: 379 LGRA-DAVFMLQPEQLSWEVADIANQCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSN 436

Query: 454 SCGFYRLINLLLEEFP 469
              F  +   +L++  
Sbjct: 437 GS-FGGIHQKILDKLK 451


>gi|190892585|ref|YP_001979127.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Rhizobium etli
           CIAT 652]
 gi|190697864|gb|ACE91949.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase protein [Rhizobium
           etli CIAT 652]
          Length = 470

 Score = 36.8 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 107/356 (30%), Gaps = 38/356 (10%)

Query: 84  PVFGVDDVLGA----LNKLAVAARLR----SKATIIAITGSVGKTTTKEMLTIALSSIKK 135
           P + VD    A    +  + +  R R         IAITG+ GK+TT  ++   L S   
Sbjct: 82  PHWTVDLARAAGVDIVGDVELFVRERRAHAPDCPFIAITGTNGKSTTTALIAHILRSAGY 141

Query: 136 TYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPA 195
                     +IG  +     P    + + E     +     L   + P   ++  + P 
Sbjct: 142 D----TQLGGNIGTAVLTLDPPKAERYYVVECSSYQID----LAPTLNPSAGILLNLTPD 193

Query: 196 HLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKN 255
           HL     ++  A  K  +  G +      +   D     L A         +    +   
Sbjct: 194 HLDRHGTMQHYADVKERLVAGSDV----AVVGIDDSHSALIADRVQRAGVKMVRISRRNV 249

Query: 256 ADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIK 315
               +        Q+     L    ++ +    G H AQN    +     +    D    
Sbjct: 250 VADGIYAEGTKLVQAAGGAMLPFADLDGIQTLRGSHNAQNAAAAVAACLAVGVSADDIRA 309

Query: 316 ALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVL 375
            L+ F   + R    +    +G    +++S   N  +   A+S   +I     G   +  
Sbjct: 310 GLASFPGLKHRM---QPVGRRGRVVFVNDSKATNADAAAPALSSYDRIYWIAGGLPKS-- 364

Query: 376 GDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMD 431
           G +  +                   I+  +L G         L  ++    S T++
Sbjct: 365 GGITTLAPYFPR-------------IAKAYLIGEAAAEFAATLGEAVPYEISGTLE 407


>gi|269468219|gb|EEZ79909.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [uncultured SUP05 cluster bacterium]
          Length = 332

 Score = 36.8 bits (83), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 21/108 (19%)

Query: 4   LWTFHDLLQAIQGHSIGIVPQGFVNGIS----IDSRSIAPQEAFFAIKGPHYDG-HDFIL 58
           + T  ++ + I    +G      +NGI+     +S  ++    +        +G H    
Sbjct: 1   MHTLGEIAEFINAKLVG-DASVKINGIASLQRSNSNQLS----YI------VNGKHK--R 47

Query: 59  HAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRS 106
             +   AG+V+++  ++    + +     VDDV  +  K++   + + 
Sbjct: 48  DLISSQAGVVILDKSLLDDCPTNA---LIVDDVYLSFAKISHYFKKQI 92


>gi|293604150|ref|ZP_06686558.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
 gi|292817375|gb|EFF76448.1| cyanophycin synthase [Achromobacter piechaudii ATCC 43553]
          Length = 856

 Score = 36.8 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 118/392 (30%), Gaps = 48/392 (12%)

Query: 96  NKLAVAARLRSK--ATIIAITGSVGKTTTKEMLTIALSSI------------KKTYACIG 141
             +A            ++A+ G+ GKTTT  +    L +                   I 
Sbjct: 456 AIIANMYADGDDGRIPVVAVAGTNGKTTTVRLTAHLLGAAGNRVGMTNSDGVYIDNLRID 515

Query: 142 SYNNHIGVPLTLARMPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFS 201
           + +           M  DVD  +FE      G +R      R ++A++T I         
Sbjct: 516 TGDCSGPRSARSVLMHPDVDAAVFETA--RGGILREGLAFDRCNVAIVTNIGMGDHLGLG 573

Query: 202 GI---EEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH--------ALGIKTIYSF 250
            I   E++A  K  I + +  +GT  LN  D     + A                 + + 
Sbjct: 574 YISTVEDLAVVKRVIVQHVHPSGTAVLNAADPIVAEMAASCPGSITYFAEDRNHPVLATH 633

Query: 251 GKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADV 310
                           + Q   E++     + +  +G      +N + ++     L  D 
Sbjct: 634 RAQGLRSVYRDGDAIVAAQGAEEIRFPLADIPLTRNGTITFQVENAMASIAAAWALNLDW 693

Query: 311 DTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGR 370
           +   + L+ F              +    T+I + Y  NP ++ A +  +  +       
Sbjct: 694 EVVRRGLATFVNDAQTAPGRFNVFDYRGATVIAD-YGHNPDAILALVRAVDAMPAKR--- 749

Query: 371 RIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPR 420
           R  V+    +  +       ++           V L           G  +  L++ L  
Sbjct: 750 RSVVISGAGDRRDEDIRMQTEILGAA----FDDVLLYQDQCQRGRADGEVLALLQEGLVG 805

Query: 421 SIHVHYSETMDG---LFLFIQSSLVDGDVVVV 449
           +    + E + G         + L  GD+ ++
Sbjct: 806 APRTQHIEEIHGEFLAIDTALARLQAGDLCLI 837


>gi|21230419|ref|NP_636336.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66769587|ref|YP_244349.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21111979|gb|AAM40260.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66574919|gb|AAY50329.1| folylpolyglutamate synthase/dihydrofolate synthase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 422

 Score = 36.8 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLL 465
           G    AL+  L    +        + G    + +    GD V+V  S    F+ + + L 
Sbjct: 361 GQSAEALRARLQGTAAAQAACHGDVAGALHAVLAEAQPGDRVLVFGS----FHTVADALQ 416

Query: 466 E 466
            
Sbjct: 417 A 417


>gi|153822243|ref|ZP_01974910.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
 gi|126520253|gb|EAZ77476.1| UDP-N-acetylmuramoylalanine--D-glutamate ligase [Vibrio cholerae
           B33]
          Length = 282

 Score = 36.8 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 328 KRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGELSQS 387
            R +   +      +++S   N AS  AA+S L       EG+   ++G + +  + +  
Sbjct: 147 HRCQVVADNHGIKWVNDSKATNVASTLAALSGL-----KIEGQLYLLVGGVGKGADFTP- 200

Query: 388 FHIDLAEVLSLYNISHVWLSGFHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVV 447
               LA VL+   +  +   G         +P      + ++M+ +   I+  L  GD+V
Sbjct: 201 ----LAPVLATLPV-QLCCFGVDG---HQFMPLHPSARFYDSMESIIRSIRPQLKSGDMV 252

Query: 448 VV 449
           ++
Sbjct: 253 LL 254


>gi|160901141|ref|YP_001566723.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
 gi|160366725|gb|ABX38338.1| cyanophycin synthetase [Delftia acidovorans SPH-1]
          Length = 875

 Score = 36.8 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 97/318 (30%), Gaps = 34/318 (10%)

Query: 156 MPVDVDFGIFELGMSHLGEIRFLTHLVRPHIAVITTIAPAHLSNFSGI---EEIASAKAE 212
              + D  + E      G +R      R  +AV+T +        + I   E++A  K  
Sbjct: 546 AHPETDAAVLECA--RGGILREGLGFDRCQVAVVTNVGAGDHLGLNYITTVEDVAVLKRV 603

Query: 213 IFEGLEKTGTIFLNYDDSFFELLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCS----- 267
           I + +   G   LN  D     + + S    I           A  + +  +        
Sbjct: 604 IVQNVATDGYAVLNAADPLVAAMASTSPGKVIYFAADRHHPVMATHRAQGNRVVYVDGDS 663

Query: 268 ---EQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTLGIVSILTADVDTAIKALSVFHPKE 324
               +S     +  + + +  +G      +N++  +     +     T  + L+ F    
Sbjct: 664 IVAAESSWRETIALREIPITRNGTISFQVENVMAAIAAAWGVGMPWQTIRRGLAGFVNDS 723

Query: 325 GRGKRYRCALNQGFFTLIDESYNANPASMKAAISVLSQISPHGEGRRIAVLGDMCEMGEL 384
                    ++    TLI + Y  NP +++A +  +  +        I+  GD  +    
Sbjct: 724 DNAPGRFNVMDYRGATLIAD-YGHNPDAIRALVQAVDAMPAQRRSVVISGAGDRRDQDIT 782

Query: 385 SQSFHIDLAEVLSLYNISHVWLS----------GFHVLALKDALPRSIHVHYSETMDG-- 432
            Q+        +       V L           G  +  L+  L  +    Y   + G  
Sbjct: 783 EQT-------QILGKAFDDVILYQDACQRGRADGEVLALLQQGLQGAPRTDYVTQIQGEF 835

Query: 433 -LFLFIQSSLVDGDVVVV 449
                  + L  GD+ +V
Sbjct: 836 NAIDHALARLTPGDLCLV 853


>gi|58583302|ref|YP_202318.1| folylpolyglutamate synthase; dihydrofolate synthase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|58427896|gb|AAW76933.1| folylpolyglutamate synthase; dihydrofolate synthase [Xanthomonas
           oryzae pv. oryzae KACC10331]
          Length = 471

 Score = 36.8 bits (83), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G    AL   L    +        +      + ++   GD V+V  S    F+ + + L
Sbjct: 410 GQSAQALHARLQGTAAAQALCHRDVASAVEAVLATASPGDRVLVFGS----FHTVADAL 464


>gi|89893632|ref|YP_517119.1| putative anaerobic dehydrogenase [Desulfitobacterium hafniense Y51]
 gi|89333080|dbj|BAE82675.1| putative anaerobic dehydrogenase [Desulfitobacterium hafniense Y51]
          Length = 977

 Score = 36.4 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 20/61 (32%)

Query: 55  DFILHAVQKGAGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAVAARLRSKATIIAIT 114
            ++  A++ GA  V V+ +        ++ V        AL    +      K T  A  
Sbjct: 386 KYVADAIENGAKFVAVDPNFNTQASKANLHVKVRPGTDAALAMAMIKYLDDQKMTADAYL 445

Query: 115 G 115
            
Sbjct: 446 Q 446


>gi|84625132|ref|YP_452504.1| folylpolyglutamate synthase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369072|dbj|BAE70230.1| folylpolyglutamate synthase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 432

 Score = 36.4 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G    AL   L    +        +      + ++   GD V+V  S    F+ + + L
Sbjct: 371 GQSAQALHARLQGTAAAQALCHRDVASAVEAVLATASPGDRVLVFGS----FHTVADAL 425


>gi|319776001|ref|YP_004138489.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|329123871|ref|ZP_08252426.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
 gi|317450592|emb|CBY86809.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-gluta
           myl-meso-diaminopimelate ligase [Haemophilus influenzae
           F3047]
 gi|327468712|gb|EGF14190.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate
           ligase (murein peptide ligase) [Haemophilus aegyptius
           ATCC 11116]
          Length = 453

 Score = 36.4 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 17/291 (5%)

Query: 181 LVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFELLKAKSH 240
              P   ++  I+  H   F  ++ I      +   +  +G +  +  +   +   A   
Sbjct: 176 HYNPRTLIVNNISFDHADIFDDLKAIQRQFHHMIRTIPASGLVLSSASEQSAKETLALGC 235

Query: 241 ALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMAQNMLMTL 300
                  +S  +    D +    +  ++ S   V   G+ +  V   +      +    L
Sbjct: 236 -------WSQQQFLGKDNEWFAERITNDASHFAVFHHGEKVAEVKWNVVGQHNMH--NAL 286

Query: 301 GIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASMKAAISVL 360
             ++           A           +R          T+ D+  +   A      + L
Sbjct: 287 MAIAAAHHTGVAIEDACKALGSFVNAKRRLEVKGEVNSITVYDDFAHHPEA----IFATL 342

Query: 361 SQISPHGEGRRIAVLGDMCEMGELSQSFHI-DLAEVLSLYNISHVWLSGFHVLALKDALP 419
           + +     G    +         +    H  ++A VL   +   +         + D   
Sbjct: 343 TALRDKVGGGVRILAVLEPRSNTMKIGVHKDEIAPVLGRADAVFMLQPEQLSWEVADIAN 402

Query: 420 RSIH-VHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLLLEEFP 469
           + +   +++  +D L   I +     D ++V  SN   F  +   +L++  
Sbjct: 403 QCVQPAYWNANLDRLVDMIVAEAQPTDHILV-MSNGS-FGGIHQKILDKLK 451


>gi|188578400|ref|YP_001915329.1| folylpolyglutamate synthase; dihydrofolate synthase [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188522852|gb|ACD60797.1| folylpolyglutamate synthase; dihydrofolate synthase [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 432

 Score = 36.4 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 408 GFHVLALKDALPR--SIHVHYSETMDGLFLFIQSSLVDGDVVVVKSSNSCGFYRLINLL 464
           G    AL   L    +        +      + ++   GD V+V  S    F+ + + L
Sbjct: 371 GQSAQALHARLQGTAAAQALCHRDVASAVEAVLATASPGDRVLVFGS----FHTVADAL 425


>gi|308177858|ref|YP_003917264.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
 gi|307745321|emb|CBT76293.1| UDP-N-acetylmuramate--L-alanine ligase [Arthrobacter arilaitensis
           Re117]
          Length = 465

 Score = 36.4 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 61/405 (15%), Positives = 124/405 (30%), Gaps = 38/405 (9%)

Query: 59  HAVQKG-AGLVVVNTDMVASIGSLSIPVFGVDDVLGALNKLAV----AARLRSKATIIAI 113
            A   G A  VV+++ +              + V   L  L       A +R    I+AI
Sbjct: 65  DAANLGDADTVVISSIIKPGNPEYD------EAVRRGLRILHRSEGLEATMRGHEKIVAI 118

Query: 114 TGSVGKTTTKEMLTIALSSIKKTYACIGSYNNHIGVPLTLARMPVDVDFGIFELGMSHLG 173
            G+ GKTTT  +       +K                L          + + E   S   
Sbjct: 119 AGTHGKTTTTSLTAHM---LKTIGTRPSFAVGANIPSLGTNAELGSGSYFVAEADESDAS 175

Query: 174 EIRFLTHLVRPHIAVITTIAPAHLSNFSGIEEIASAKAEIFEGLEKTGTIFLNYDDSFFE 233
            + +     RP + ++T +   HL ++   + +  A  +  + L + G +    DD    
Sbjct: 176 FLNY-----RPDVIIVTNVEADHLDHYGTADAVHQAFVDFAQLLPEDGLLICCADDEGAN 230

Query: 234 LLKAKSHALGIKTIYSFGKSKNADFQLRKWKQCSEQSWMEVQLQGKSMEVVHHGIGYHMA 293
            L  K  A             +   +     Q +E       ++  S E     +     
Sbjct: 231 NLARKMRAARSDIRVQTYGFSDHADRRLSQAQATEDGRFTATIEWGSGESRILDLAVPGQ 290

Query: 294 QNMLMTLGIVSILTADVDTAIKALSVFHPKEGRGKRYRCALNQGFFTLIDESYNANPASM 353
            N+L     +++         +AL       G  +R+      G   + D+  +      
Sbjct: 291 HNLLNAAAALAVGIDAGLEVQEALDALSSFSGAARRFEFKGEAGAVRVYDDYAHH---PT 347

Query: 354 KAAISVLSQISPHGEGRRIAVLGDMCEMGELSQSFHIDLAEVLSLYNISHVWLSGFHVLA 413
           +   ++ +  +  G GR   V      +   +Q F+   A+ LSL +   V      +  
Sbjct: 348 EVQAALTAGRTVAGNGRLHVVFQP--HLFSRTQEFYRQFAQALSLADSVAVL----DIYP 401

Query: 414 LKDALPRSIHVHYSETMDGL----------FLFIQSSLVDGDVVV 448
            ++     ++     +   +             +      GD+++
Sbjct: 402 AREEPIEGVNSELIASRIEVPAQVLAPAAAVAHVVEKAEPGDIIM 446


>gi|225619468|ref|YP_002720725.1| molybdenum cofactor synthesis domain-containing protein
           [Brachyspira hyodysenteriae WA1]
 gi|225214287|gb|ACN83021.1| molybdenum cofactor synthesis domain protein [Brachyspira
           hyodysenteriae WA1]
          Length = 406

 Score = 36.4 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 28/87 (32%), Gaps = 23/87 (26%)

Query: 403 HVWLSGFHVLALKDALPRSI----------------------HVHYSETMDGLFLFIQSS 440
            V  +G  +  + ++L                          +   ++    +   +  +
Sbjct: 184 AVISTGNEIANIGESLKEGQIYDANAPMLVARTSALSCSSKFYGKVNDDEKEIKEILSKA 243

Query: 441 LVDGDVVVVKSSNSCG-FYRLINLLLE 466
           L + D+V++    S G F  +   LLE
Sbjct: 244 LEENDIVLISGGVSMGDFDYVHKELLE 270


>gi|217967148|ref|YP_002352654.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
 gi|217336247|gb|ACK42040.1| FolC bifunctional protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 36.4 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 3/44 (6%), Positives = 15/44 (34%)

Query: 409 FHVLALKDALPRSIHVHYSETMDGLFLFIQSSLVDGDVVVVKSS 452
             +  +  +     +++          F++      D++++  S
Sbjct: 384 EELGNIVKSFNADANINLHTNFYEAINFVKKEASPEDLILITGS 427


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.118    0.311 

Lambda     K      H
   0.267   0.0361    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,017,154,460
Number of Sequences: 14124377
Number of extensions: 182051658
Number of successful extensions: 526985
Number of sequences better than 10.0: 9537
Number of HSP's better than 10.0 without gapping: 5032
Number of HSP's successfully gapped in prelim test: 4505
Number of HSP's that attempted gapping in prelim test: 506249
Number of HSP's gapped (non-prelim): 10500
length of query: 472
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 329
effective length of database: 2,823,007,719
effective search space: 928769539551
effective search space used: 928769539551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.8 bits)